Genbank ID Gene name Gene category Sub-category1 Sub-category2 Organism Lineage H42_TN H40_TN H39_TN H44_T H43_T H41_T H38_T H37_T H36_T L44_T L43_T L42_T L41_T L40_T L39_T L38_T L37_T L36_T H33 L32 L29 H32 H34 H29 H31 L28 L34 H28 L31 L27 L33 H27 L30 L26 H26 H30 76666836 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 42884.6146 10095.5968 27347.7983 40196.8848 26670.7777 5706.7047 13513.5913 16079.6417 6837.7037 22775.3982 20981.5829 355232.6129 23145.3635 30106.4493 27959.5039 27959.5039 16091.8679 52263.1093 35011.6685 35718.2941 72301.9240 24217.8828 51336.2336 19113.7225 49333.9038 19583.9640 37731.8266 74099.5583 26289.3982 17510.4812 39787.7251 22061.8682 85408.6853 239806525 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5128.7156 5538.0992 7804.3171 7590.7472 5279.5618 110302.3446 2923.1128 9098.0955 6105.3032 4314.2299 143229.3680 8478.9667 9318.9592 6973.6436 4802.7119 4802.7119 10894.0123 11820.3617 44737.6887 7554.7103 6229.1476 8838.4053 4887.9554 5088.4105 19325.9488 5649.3901 20246.7482 83285.1902 15972.5012 5469.3962 6955.6275 6547.5733 6623.7534 7163.4711 408781979 badh Organic Remediation Aromatics Other aromatics Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 9960.3929 5292.0699 7589.7629 10309.6673 6857.7853 5478.1590 2506.1428 3573.9640 11906.0976 5209.4754 185444.4542 7451.9207 8518.3543 10384.1501 5472.1221 5472.1221 5418.8051 12699.2803 6987.8306 8455.3519 7624.0114 17684.1363 3211.4039 5595.6073 11481.0968 10707.0071 73557.3880 10286.3349 14210.9523 5867.9968 10212.0136 6641.1333 3853.0327 6675.2080 171685296 phenol_oxidase Carbon Cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 4773.3464 2572.7743 2572.7743 9025.4052 3282.4973 226312559 nbac Organic Remediation Aromatics Nitoaromatics Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 41923.0147 29256.7945 32727.8456 20127.2435 7630.7058 33236.4330 33909.8883 22688.4907 22718.7269 29282.3530 13242.4796 810344.0676 33382.5663 42186.8138 32332.8357 20501.7563 20501.7563 20957.4151 27240.4426 25207.8473 38418.0839 34166.1283 49602.6435 11836.9514 19544.5244 49632.3804 16808.9560 46305.9866 46495.6578 40152.3087 13133.6448 14138.6866 24436.2699 15133.5263 32220.0069 99030482 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 60018.3764 198672.2734 64666.5811 37445.4482 12792.9733 99387.9506 177006.0437 7816.1056 12657.6005 31188.7877 13105.5261 395769.1175 31465.9922 14926.7354 51279.8749 65409.5485 65409.5485 14963.9213 21230.6064 39445.5345 14913.1128 18667.6179 18696.7295 61003.2687 16323.8726 30684.6935 20015.5085 52218.5403 24708.9064 33695.8938 13828.5097 17422.9182 12919.5906 10547.7620 13251.9654 226325333 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 5124.1215 4841.3480 3985.3043 3478.2148 9689.7939 6023.1618 5993.6588 3789.3552 5809.3896 1855.1636 3821.3760 4976.9585 333740153 nifh Nitrogen Nitrogen fixation NA Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 12285.7257 335436959 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 7813.5285 12094.1979 15437.2557 25254.3607 16084.1265 3426.6290 22602.6923 27747.5822 8361.5213 7167.8515 20279.4300 167292.9135 13218.8778 11856.5065 23101.2647 14408.0130 14408.0130 24634.8123 28955.0445 12953.8130 13101.2907 15159.5484 219127.2150 7748.9090 7983.8076 8250.2782 6836.4999 27647.2981 11649.5590 11450.8418 6561.2876 11417.0787 11970.7159 5839.1076 19367.5835 209401770 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 259060.2997 31115.6704 152895.8600 261613.3398 255700.3112 313319.7807 491938.5665 420969.6884 97490.2348 142289.8237 141244.3051 104524.3227 3115955.6698 167335.0500 155968.2487 379742.7940 150834.6879 150834.6879 156300.1004 169459.5806 109201.4289 128450.1859 771695.3022 87370.5019 145453.2931 101957.9478 204323.2324 116908.2469 268761.0646 128504.2143 198821.5900 91776.7844 112116.3227 136336.9319 63795.4727 160202.1745 242775024 nitrate_reductase Nitrogen N Assimilation NA Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 75137.2569 5559.8084 10873.1854 11314.6461 4707.9041 5597.6787 3175.3683 7087.2839 7018.9726 43467.2446 116143.0821 10020.2422 5928.7602 6480.6754 4421.5944 4421.5944 20791.7485 12467.5075 7353.2802 4465.8386 10652.9880 14675.7060 4441.3301 9716.4563 10048.6958 5648.6480 28899.3034 5223.8743 9481.4780 12627.4084 6411.4256 5278.3667 2690.2524 6105.4040 48527126 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 7915.3766 54446.1419 4291.8411 10662.0236 15521.0317 14490.2051 2560.6444 5769.1371 14621.4559 4237.1114 123429.5890 9209.6953 6718.4969 3546.6027 3546.6027 3678.2299 18977.0112 7251.7383 7546.3072 9560.0098 13064.3796 2897.8662 6606.8069 14579.6422 3920.5575 15417.1290 8954.0280 8255.8766 4527.0679 7426.5069 5581.6067 4587.7273 8432.9242 118758093 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 48528.1560 12575.9017 29066.2943 73085.4789 42933.9783 95791.8061 15560.7636 13977.6305 14935.4400 66393.8116 38110.3074 823356.5175 34901.2827 535441.6027 136036.6051 26706.6271 26706.6271 21516.5974 23353.9723 22090.0787 36153.8470 58754.0529 9824.2460 22520.2486 35138.8304 52926.0255 53689.8943 59146.9716 36009.3010 70708.4560 17212.2112 23213.2603 25901.9388 14988.3534 17911.2954 321146120 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 8218.7008 8629.4799 11520.7340 9363.5863 10057.5017 5244.9337 6481.8263 8344.6559 4974.8040 198934.5019 45457.5786 9716.9814 10989.7795 8925.3486 8925.3486 4331.1860 14678.3437 10746.3982 7868.8723 7313.1905 8265.3595 5625.8028 5369.9725 11260.8261 6414.0201 30122.9682 8074.2168 11392.7672 5948.3398 8081.1088 9962.6518 4638.5977 12266.9325 327548246 cysI Sulfur Other NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 4914.7341 8806.0193 6868.7113 4831.3050 4769.5928 4514.3680 4269.5933 6068.1050 13751.8968 173959.0890 6014.3976 6625.2066 3361.1425 3361.1425 3807.7226 8396.1622 22891.8221 8155.3253 5082.0396 10116.5614 2917.0080 7500.0726 10446.0495 3945.7722 11504.3159 14844.6880 10017.2374 4651.9887 4742.3169 4197.6323 3649.8472 13953.0147 89512742 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5120.6970 13896.5950 2160.3830 3649.1380 3719.2021 4161.3029 5414.7114 3520.4158 115305.9878 6261.7056 6934.3315 3952.7363 2680.1613 2680.1613 3765.0068 10875.0410 6330.7345 5118.0951 6600.5385 6925.3548 5157.4138 3646.8200 8944.1420 4196.7510 14044.2313 5203.5074 13200.4123 4189.0396 7082.5150 16391.9505 11349.9734 7246.1630 374606499 fosb Virulence Antibiotic resistance Degradation Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 16683.4986 317868.1582 13385.8335 34717.9147 7297.0397 16378.2531 10164.2274 20189.1048 13114.9354 28859.7182 11454.8479 318898.6941 14809.3876 9737.2894 13408.2776 12325.2387 12325.2387 10368.8165 19656.1245 15509.2044 13832.6923 13298.6352 20912.8673 12685.8234 8536.0598 22091.1228 21444.7235 32610.0836 26099.5649 18016.9248 9665.3099 14062.7616 11689.7097 9321.2290 26570.2947 144899536 cellobiase Carbon Cycling Carbon degradation Cellulose Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 6671.5932 3640.5829 1897.0499 1897.0499 30014.1080 8300.2895 146306483 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 4946.2793 134190.9768 7080.0836 6050.9174 4133.8372 7375.2483 3179.9269 123727.2901 5145.3827 3789.5797 1975.2818 1975.2818 6463.9427 7644.5521 5411.7764 4253.3168 6643.9074 11881.1535 3715.0238 7370.7398 3551.2961 12388.4214 32559.3867 3443.4481 3631.9870 4809.3643 3196.8869 8386.5860 334137810 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 12801.1577 33221.1295 19526.1649 5553.1927 9537.4577 17097.5372 7101.7080 11391.7999 15348.3069 6957.9134 261782.8131 17801.1106 17240.1742 10050.8713 7213.3541 7213.3541 7775.9846 23936.4882 13507.1872 12769.0049 31352.4807 14999.5720 16633.2479 11878.3112 14282.8171 10588.3766 39735.5185 29944.5418 20467.3778 11379.1598 11121.0603 18262.7961 12657.1683 7247.4389 116200744 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 60200.3736 47253.5789 50418.9314 98678.3619 12948.8208 21879.4883 73584.1317 13299.3267 41264.6872 64285.0435 31687.9005 2097852.2710 45384.1348 45851.3489 42969.6233 31366.0759 31366.0759 21799.2277 62983.3125 64019.7303 44655.8101 44218.2728 72755.9300 17796.2077 22968.5913 51978.9385 23401.5265 74227.2001 47278.6009 54764.8979 25006.8672 28171.8897 29848.9242 41190.8720 56761.5186 319801233 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10077.5445 7318.7511 10077.4660 5081.0184 6401.4360 3689.3365 7121.7453 9167.0911 7334.7544 117218.9610 12125.2838 7911.2007 4578.3055 3472.3108 3472.3108 7952.2835 11158.0537 10845.2472 8182.7069 9124.4856 9656.7028 4871.0629 3742.6404 9197.9063 3713.5025 24133.5417 11137.6963 12455.7970 5149.0864 8615.4018 6270.0900 4763.4330 17492.2587 365423798 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 23887.8834 21530.5295 30495.9270 49183.4488 16209.6222 20959.9536 37146.6823 150393.2275 33814.6622 35044.6150 37173.2545 846369.7953 150590.8924 61115.5772 33289.2452 26381.4551 26381.4551 20864.7783 48089.0685 34136.4118 52893.6542 37397.9782 33978.5250 14588.1076 34589.2604 104069.3123 44849.2668 83685.7319 68583.3270 74294.0301 27084.3055 29403.0667 30578.7336 17287.9648 23302.2786 195941115 ppx Phosphorus Polyphosphate degradation NA Escherichia coli O157:H7 str. EC4024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 1334656.4763 322824.5206 1012038.1596 1667415.3245 3525842.1449 1103286.1696 708729.9508 792280.6369 833157.1078 756169.8164 795283.3783 457919.1243 18279246.5025 940588.6756 888555.7028 2293898.9804 817620.6981 817620.6981 527318.8254 744033.1239 672250.9862 921848.6668 1084517.3754 2584150.8776 507819.0700 447190.0874 1198001.6300 340057.3158 1272445.6127 826199.3325 841092.9528 436171.8133 427090.1656 436606.1677 435269.2564 1743968.9264 73534229 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25822.8029 23539.7687 10657.0289 115179.2868 5175.0648 37451.7856 70741.2077 8341.4571 10986.4150 28316.3254 19820.5585 690405.7069 17492.5224 23768.2688 23211.2112 25812.7611 25812.7611 8819.8543 45418.1050 13232.1519 12586.9553 107309.1343 12586.8696 233736.5287 27058.3389 18710.7935 25374.0666 48416.0891 24207.9608 20477.0986 37346.4142 21154.0573 23916.0688 7635.5262 27629.2127 256359007 xylanase Carbon Cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 112334.6534 20696.8870 126724.6542 65528.5567 50911.7353 36699.9716 33426.6900 71212.4940 72532.4702 100034.3678 64096.7262 67448.5160 1567772.4061 40061.8539 53398.7935 85852.1019 63238.0110 63238.0110 53645.0831 153490.5222 47936.9439 73512.0036 136107.4263 103602.8356 29590.0428 44274.9199 79462.7024 42746.3700 114963.3590 85701.4258 84469.6929 32766.9875 42344.9625 69364.1283 25008.6204 75226.4846 393775302 tfda Organic Remediation Aromatics Chlorinated aromatics Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 15665.5796 9831.9658 6933.4457 11016.4771 3927.2631 12166.7902 5599.6018 6709.4573 77785.0798 11200.1637 32511.8039 10469.1583 19072.6594 19072.6594 3042.1151 17257.4328 6736.3231 8626.0616 25578.2216 7279.6333 4887.3518 45849.1469 8112.6544 5911.3115 6662.6525 14727.6786 6710.9165 3242.0747 6741.8696 14390.9859 3911.0917 5826.7999 47933806 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 22328.8125 84642.7218 8060.1590 15173.2312 16413.5064 7325.6239 8871.4078 12926.3089 47261.5233 27180.1550 407977.3750 11603.1410 14959.8904 14853.4355 6881.9526 6881.9526 9308.4169 22009.3670 16088.9067 12245.0820 28324.4531 13595.6359 8298.2702 11615.2278 15051.7873 6000.1732 21473.2309 9227.2859 17844.2873 6101.3379 10211.8297 13069.2243 6796.9149 20949.3937 157845482 Sir Sulfur sulfite reduction NA Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 8920.6715 118242.5518 6941.9875 7858.2460 6383.8431 44135.1969 2121.4704 4087.6287 8103.7113 5182.0130 83368.4884 6327.4344 6904.3804 7216.4330 7216.4330 3335.7815 13538.9328 4626.8958 5559.2538 12670.2629 7915.9377 2191.9373 7005.6933 14440.4973 6948.0905 14080.7490 6738.3608 5461.5949 81182.4943 4376.1283 6189.1746 4017.1546 12588.8968 225043355 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 22680.3803 27372.6608 1093182.8114 311783.9805 19293.5941 44131.7558 35512.0141 178763.5629 76963.0814 46042.1748 145081.0342 1787701.4913 61475.7177 210570.7058 195665.4696 49616.1525 49616.1525 24621.9528 74959.8121 25956.4112 19199.2825 172596.4141 26359.6232 28794.5173 42371.1281 73151.3665 47546.5402 147060.6381 34539.6502 91239.7561 35172.3652 39641.2032 49781.3294 24823.6816 98002.1678 302524096 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 32737.2308 27222.6760 10316.2212 22082.2953 16470.6758 26802.7788 8432.6643 16728.5527 41887.3909 31285.4594 7816458.3883 25581.4385 48008.8104 545419.5408 15109.0711 15109.0711 32312.7717 60499.5781 31685.0465 49983.4965 27436.7888 26673.3675 13742.8806 15602.4091 25767.1961 22430.1728 61647.5843 43098.0860 42338.5588 13934.2267 38159.7007 59202.0342 19463.3867 52580.3897 37900180 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. OH2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12537.7214 10180.3283 4036.4121 5740.6228 4401.1021 5797.6631 5570.7963 6691.8511 6612.9821 103590.3766 8583.0833 7147.7502 6737.2955 9515.8361 9515.8361 3943.8376 24717.6411 9555.8705 8814.3566 8700.3560 5734.6135 6766.2448 7540.7897 12446.7609 8535.6163 28218.5021 15795.3422 15166.3190 5965.8148 9515.5992 8343.8334 15001.7418 5467.5611 291565753 FBPase Carbon Cycling Carbon fixation Calvin cycle Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 16027.5092 14308.8316 7048.8978 11952.7064 14863.3173 18280.4561 8000.7347 11955.1537 8872.1137 11499.6680 7032.6255 298084.1608 14778.6482 10434.2444 9012.2615 4592.7044 4592.7044 9632.5610 30565.3751 17319.9278 18480.9801 17677.0318 40319.3915 10366.1937 9260.7699 15925.9349 10679.4270 31299.5731 5028.1379 19658.8283 9123.8859 11975.8477 10238.2609 8148.7215 20838.2256 124295071 protease_serine_fungi Carbon Cycling Carbon degradation protein Hypocrea koningii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 14410.4728 8947.8933 10665.3477 12769.9705 5656.4674 26990.7624 6233.7177 7749.2276 10816.4954 13228.8623 221129.3439 29456.4484 13323.5320 9622.4961 7962.8966 7962.8966 12426.2933 268195.3506 17092.7580 11353.4202 20502.2581 19634.9345 6201.8312 15461.4336 19139.8210 9784.3315 50059.3029 21477.1924 29877.1627 20592.5294 13988.2511 12855.8099 31634.7738 16475.4715 14025121 mer Metal Homeostasis Mercury Detoxification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 27285.0932 49217.9244 25400.8259 10024.9781 14069.1909 52403.7300 10730.3960 9585.9685 28096.9450 18585.5059 630324.0272 39232.3437 68270.3834 174303.8517 14501.7251 14501.7251 12139.7571 27343.6687 38661.2602 195212.1091 31574.9302 29569.2121 12717.7100 30360.0883 19311.8726 63075.4140 70225.3779 35355.9523 22768.5039 19919.2397 25527.8623 18793.8255 23786.1898 23819.7333 148240402 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7244.1544 37040.1078 7494.8717 8133.8698 6905.9602 470177.7158 59785.5104 6443.2735 9976.7285 18823.8399 7579.8163 112093.2731 52463.9731 23039.9485 5251.8516 5750.5619 5750.5619 4588.4501 42723.1185 11880.1535 15442.2404 14874.7407 15534.2496 5488.2217 7432.0750 10101.7402 7799.4025 21630.9556 10543.7173 7548.3843 7620.5376 9165.0553 14151.3499 4072.0499 9983.4554 378747720 aps_apra Sulfur adenylylsulfate reductase NA uncultured Nitrospirae bacterium superkingdom:Bacteria;phylum:Nitrospirae; 10495.8832 4053.4139 8366.3846 3668.1796 19886.0787 2368.9856 25630.9305 14389.3702 69354.3880 7228.4916 7397.7705 138525.9723 2425.4966 2425.4966 3483.0117 11062.7485 7113.8471 10080.2469 4391.5533 6279.5996 7968.4862 22390.8116 11499.8064 6169.0923 3739.4770 5063.0207 4196.5990 3279.1089 227843437 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 73754.2141 49324.3376 10581.5935 18644.6924 38833.7874 24841.8159 37017.0451 75625.1957 175495.9286 30821.3606 439307.3490 30077.4942 63863.4156 42594.7185 30402.5762 30402.5762 19417.6539 69678.4839 39605.1760 78469.7949 84564.5554 30202.6590 26177.9857 30538.7882 48114.4141 53693.5489 84505.0935 49242.7125 52963.4287 42453.9291 38825.0794 42337.0317 36731.4270 36346.2944 72160988 amyA Carbon Cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 23599.7103 11315.7769 7808.5035 5228.5669 6953.7805 5965.9705 4298.4530 112359.1801 23324.4530 21822.1565 194238.6034 10074.0640 11260.2000 13372.6769 10554.4232 10554.4232 12091.0477 14437.1478 9100.5180 6914.5711 15068.6029 12334.3492 30232.6818 9986.0435 15522.4830 4895.7318 17283.4373 15785.0488 44694.5408 56021.5960 9257.7890 10095.2484 4550.1342 6457.0064 311285518 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 85108.7095 22583.7231 8037.6790 20224.0874 66351.3516 173450.8700 17266.1528 19414.6980 46986.9183 47143.2946 359586.3222 14917.4971 50761.3338 65498.4390 61908.9745 61908.9745 26481.2649 60923.4699 59631.9053 28549.0809 45783.9715 46284.2411 60125.8293 21068.8457 40609.5121 53696.6320 98592.5431 44645.3965 61145.9355 27008.0054 72932.6452 48036.4204 31335.3988 29506.6749 330937084 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. pisi str. 1704B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 49672.2565 14397.6999 11646.3437 17614.1070 7298.5794 22093.1976 13398.0990 16055.2080 30623.0100 77214.4038 17751.1148 464994.9848 21418.5372 89491.2162 10424.7805 46731.3879 46731.3879 28961.3420 29050.8541 21002.9862 45694.6859 17501.2784 2512433.2630 7344.1527 26822.8262 23768.4572 33190.8009 129790.9123 12710.0305 26941.9974 14748.5393 14087.7922 112824.2998 80228.0090 30669.3008 145964802 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6784.1712 5575.1480 8270.6815 88749.9922 2627.5769 2627.5769 8733.0991 6105.0337 4623.0953 11170.8434 4615.2220 12068.2408 6357.7500 3456.1377 3303.7348 300390275 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9497.1373 4456.4579 367466577 catechol_b Organic Remediation Aromatics Other aromatics Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 11807.3969 5943.5122 6712.3579 40106.3306 4492.2855 531408.0225 3070.2149 7358.2659 7151.6516 12172.9344 107528.1327 7292.4173 17332.9689 4472.7217 4472.7217 3519.7052 9839.3017 7866.4763 8452.5180 2871.1389 4483.8361 8947.1900 2744.4916 18775.2034 7478.9053 5286.8063 2067.9374 7889.7519 208343513 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 126250.2049 43204.3996 74154.9395 50286.1865 49435.0566 14758.2275 125329.6956 97005.6765 153469.8480 76236.5972 103070.9996 83464.4843 1639089.3975 107708.0482 103939.2877 188385.3343 124360.9068 124360.9068 52362.2239 135079.1014 142623.0522 133710.4223 117603.7806 140058.2423 50621.7299 61049.3309 78982.3703 45710.1718 230505.0143 237834.0728 98545.9250 55033.5175 75538.1465 76888.4013 55234.7395 290157.1595 302562176 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 87100.5452 419558.5798 63085.0543 35898.7491 125606.1556 14534.9416 138985.6156 96735.7005 40672.9744 62933.7818 74694.3417 102322.1898 1096128.8761 67843.3576 163439.9732 126028.5683 71439.5635 71439.5635 48712.6707 118853.5728 52185.1158 125572.3498 119993.3344 85472.2203 79732.2073 101835.1282 92926.8127 86169.4062 452296.2984 80112.3813 131684.6303 41311.8354 130403.7701 78562.1918 40865.9190 111446.2052 332377156 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 194397.5797 36596.2592 157669.9118 75129.9580 111580.4010 46049.5474 110197.8629 62091.4795 60803.1054 95233.5840 93088.9997 88961.2850 1612237.0798 86737.5503 177063.3275 445162.5848 125925.7422 125925.7422 59679.4529 115890.6195 108415.1794 164833.4367 111339.5952 118555.4468 69853.0331 80626.8330 76264.5714 81700.4267 165810.1060 163491.4402 115365.6592 46003.6610 100463.1389 72239.4289 64107.0844 197304.3008 118169063 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6364.7153 10522.9066 1995.1706 24582.5018 7191.3679 3545.5172 88648.9206 5148.8553 6622.9167 7083.0309 4907.6945 4907.6945 5048.3870 18653.8329 4102.7204 14736.0464 5336.9455 8372.9055 4533.0784 6829.4745 8300.6233 5241.1202 18700.6726 6405.9424 9359.6512 3807.6964 10376.9300 3935.7948 4099.9367 9963.2759 40787186 dsrB Sulfur sulfite reduction NA Desulfatibacillum alkenivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum; 8571.8616 20616.4572 5100.1244 2847.6831 15873.6883 2991.9495 2991.9495 5534.1520 8096.4697 4585.5401 4961.0364 152988445 nosz Nitrogen Denitrification NA Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 15737.7790 13242.5314 13308.3196 21377.9205 5937.1880 18257.3456 11293.3749 9249.4955 19701.6728 8588.6469 6073.4236 190231.3077 12518.9194 15134.6029 10336.8987 6289.0353 6289.0353 10632.4019 15951.6562 11894.0398 12235.8236 14793.0933 17634.8648 7930.9465 6351.1498 14030.0211 7079.1167 30475.8477 8704.3667 14031.1353 11767.3127 9992.3583 9919.3749 7209.2253 18308.6409 317970497 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6508.1959 5642.4170 15883.1993 12029.7705 3920.9813 58324.3836 3729.4870 79233.9444 4092.6185 4129.7745 29899.0458 64285.8533 64285.8533 21340.3130 8080.5886 6234.3879 4267.3392 16579.7447 7173.0419 4749.5624 3634.8666 6430.6949 9484.5137 13361.8769 5681.6141 7183.9897 6616.4220 9382.8550 4330.4627 4180.4357 16598.2066 89069893 FBPase Carbon Cycling Carbon fixation Calvin cycle Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 292211.1384 143976.8332 219515.5585 794429.7448 215010.0423 123040.7270 144356.4437 182805.6484 100660.5866 84253.7648 109129.3040 165945.7058 1997459.4594 146601.3953 267336.6865 322823.4410 234308.4621 234308.4621 165564.3078 391667.8401 245755.4407 132703.7737 194780.8828 202049.6532 439835.6903 100026.1321 165521.2242 104941.1611 256496.0718 150615.3740 173269.3875 113500.2805 105479.5106 132397.6104 79457.9108 135658.0501 342135214 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 22677.6606 120413.3902 12293.4866 2511.2452 4627.2232 16674.8459 11435.1115 6295.5057 4015.4024 160159.5124 8811.4246 7367.8397 16691.1244 5423.0131 5423.0131 4193.4892 12462.3185 6363.2049 5438.7621 7415.0724 5762.2485 8455.5707 4566.4374 7674.2713 6453.4744 14503.8016 9967.9991 7346.6834 5471.6318 8850.3803 11315.0390 7136.7457 9700.3948 219860575 mannanase Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 4538.8557 2876.9356 3825.4750 31281.0831 9254.1980 7690.7758 8810.1485 4592.4595 5201.2570 8192.9882 64307.1967 14708.6696 27259.8424 3929.6503 3321.6634 17886.5708 5036.7225 386924892 ppx Phosphorus Polyphosphate degradation NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 7010.8981 7802.9435 5886.2999 4137.3065 4107.1087 2569.3224 14923.5393 7691.9636 312883.4962 5706.3101 4717.8510 3736.7624 10389.7220 6183.1273 6188.5220 9844.0028 7861.3681 6132.8098 4050.6654 7785.1601 4204.9297 15702.8563 4498.0788 9709.0719 5171.1964 4755.8827 4173.8374 6639.3858 11084.4680 110162116 bphb Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 39582.0212 21021.3981 57827.7207 5843.6129 20456.1626 649260.7627 56091.0607 159293.9042 18463.8059 55380.3189 61387.9067 44552.7546 538621.3125 91682.4208 52560.0601 62179.6170 38906.2826 38906.2826 109320.1733 55646.6342 21939.6016 55991.7216 38163.7858 26827.9341 15846.7184 26140.0573 174504.4514 69474.7395 85211.3478 94842.2020 38132.6635 65202.4780 41011.1980 29737.7899 33109.4716 30713.6599 111065500 protease_serine_fungi Carbon Cycling Carbon degradation protein Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 12127.7245 14456.0318 8929.2064 8123.2035 2600.0894 9048.6428 9167.8325 6478.3493 66703.2885 8818.3632 351483.6709 13748.8223 10972.3321 14440.2250 22866.4896 22866.4896 6641.3227 21027.7945 15474.9842 11579.3638 40420.4849 10164.1628 16148.3353 32651.8870 23942.8693 9949.6732 37213.9504 11225.4061 13059.8906 5440.2637 11381.5129 18264.2937 4144.2112 11353.4884 116626210 amyA Carbon Cycling Carbon degradation Starch Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 10443.0795 4409.7541 5857.0184 7353.5577 3169.6226 7410.4184 4396.5773 9956.1791 132122.3537 3701.6116 10584.4235 5767.8889 4376.1456 4376.1456 3668.1630 19243.9185 9857.4257 10518.6726 5906.8682 4990.7860 4702.4762 6772.2469 3832.9951 15252.4561 4826.4042 8929.3780 5429.2831 10467.0497 7424.8353 4870.1560 6656.2125 315924069 amyA Carbon Cycling Carbon degradation Starch Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 4162.1317 5251.5340 186951.6134 3452.6727 9488.5136 3334.7166 357009928 cysJ Sulfur Reduction NA Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 6308.8487 5778.3176 7452.9080 21763.3367 10264.0229 4511.4735 4657.4948 3588.1722 312366.1553 5561.0707 4713.1760 7828.0285 7828.0285 4352.2087 11313.4340 5145.3993 4305.7980 10225.6812 5276.7671 4052.8876 3410.9274 27569.3366 4182.6422 16076.1771 7279.5082 9749.8001 4958.1588 13280.9862 4677.3581 3174.9349 11857.9891 66267662 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. K-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6913.9949 5167.3213 5085.5379 11165.4943 4315.4879 5695.5748 3351.8473 4145.4589 6191.0573 5606.5104 87895.6084 4715.4170 4278.0041 11884.3480 2542.7027 2542.7027 6231.8099 9259.4832 5601.8103 5016.3704 7038.8969 9873.3871 3350.5089 3917.9141 9728.7575 2900.9053 14425.6332 7637.3174 7129.5413 3026.7281 4673.4869 8328.3468 8359.3531 9101.1117 190688698 cda Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 19428.6175 11952.4997 28655.7229 4861.3128 11890.9331 11732.9666 14236.1880 7050.7224 145828.4543 10765.0738 28566.8338 32887.2272 14318.9193 14318.9193 4118.1093 13209.7855 18690.5464 9551.6306 8418.1196 3960.3105 64268.0932 10638.7633 10564.9063 6091.3383 19961.2856 9873.7912 15960.0184 26620.4217 16218.0582 9608.2622 4469.3535 15906.8733 158523904 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 274588.1139 78333.8464 233810.1845 341812.7445 46350.4411 33740.0802 195703.8175 255218.4633 161014.3098 178465.1251 232520.2962 213687.0798 4747880.0926 173319.0584 348582.5805 496661.6562 344300.7035 344300.7035 230534.0792 327134.8972 177689.2508 385140.1048 343588.4989 313354.1056 206622.5814 184552.4475 336615.7056 184460.6114 790694.2474 418853.5419 266045.1792 182583.8612 176294.7172 209836.8141 140862.2158 408134.4905 228572122 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 316912.8542 12828.8575 56470.0325 34532.2733 8614.0276 9775.6321 14593.8925 18563.7676 70324.5126 5867.8081 6445.1143 15538.4746 4804.3015 4804.3015 4381.6020 13434.7320 19074.6686 982153.4559 83428.7822 4145.3393 212401.9815 5869.4287 6096.4530 163047.0355 25904.9241 13983.7501 12899.0755 262840.5143 7306.8692 6675.2178 9019.2341 9789.4314 151302322 APS_AprB Sulfur adenylylsulfate reductase NA Desulfarculus baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 7849.9400 4489.2170 4666.7345 2636.8042 3310.0036 5316.6646 1138932.2778 2867.2519 118671.0679 4888.5950 3140.7475 3140.7475 5992.4152 8033.3019 5453.0992 4611.5248 4916.5549 6663.3411 2421.7344 3685.4116 10337.9725 4097.5920 9984.0763 7420.9187 10470.6539 3465.3842 4210.5360 9297.8617 2727.0549 8873.8041 139478507 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 19767.0203 10084.4913 20778.2682 7248.2323 8387.0320 13256.4745 6705.8131 13648.7411 27238.6974 8692.9185 350659.1491 140535.3206 21352.2375 31251.9864 8301.7376 8301.7376 9500.2026 25440.2193 21981.2265 58616.2535 37334.3023 25505.6184 12938.5280 12209.7546 34782.9414 16609.2649 26805.7018 25566.0041 23274.2356 9261.3446 11257.0053 14114.7333 16263.1928 54658.2613 325964095 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 22596.4477 8385.7482 4008.3633 4945.4030 4963.0977 4682.2820 9252.4411 9252.4411 6492.7828 6393.5119 5501.4308 3698.7179 4135.5415 3738.8432 5701.0748 7129.7644 1905.7073 3562.5793 9018.5762 183981987 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 213242.4745 42324.2267 40009.6736 244504.6898 51549.2150 27083.2531 95307.0502 193241.2869 98346.6321 87003.0036 163500.8174 142679.0520 1877573.5070 101527.4693 109304.3218 272654.8767 106273.3079 106273.3079 58989.3428 189980.2734 95411.1581 82840.2301 252769.8073 100396.4657 86296.7400 128169.0464 97528.1694 98188.5431 327925.5164 85541.4997 268410.0280 70997.4718 115353.0746 101386.4624 92823.9718 286955.1814 375308802 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6781.8178 3024.8382 3336.1090 2913.9825 4991.5270 5232.4082 2626.7802 63050.0029 6711.6851 7016.2754 4672.0775 4376.3178 4376.3178 3288.7886 8198.5386 4601.4744 5274.3855 7709.8480 4829.3945 3361.3067 3560.4187 7707.5523 2825.6410 15821.1710 5571.0807 7944.7072 2868.6520 4519.6767 5172.6897 2356.6207 5823.9004 310763393 nbac Organic Remediation Aromatics Nitoaromatics Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 5038.0712 5535.1922 5486.3792 2847.9987 4844.3514 9334.8898 3394.6225 111382.4697 21114.8430 4834.6289 3101.6719 3101.6719 4732.0703 9762.2342 6600.3641 8240.3018 4344.2878 7404.5380 3671.7381 14286.9498 3383.1470 17345.2850 8316.5414 8199.4191 3202.6196 5514.3149 6427.0527 2840.6657 5671.2278 91807154 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 3892.7713 2883.3276 2381.1471 4713.8039 21712.9541 4425.2048 73767.0905 6668.1152 5473.5478 17912.2408 3307.6530 3307.6530 2858.1510 11195.6440 9066.2775 6481.0633 9366.2643 6849.1051 4118.9790 4793.4981 6430.7152 2827.3056 15566.4327 7039.9005 11011.3576 4960.8634 14927.6145 5694.7483 7163.8619 7336.2450 150028866 TIM Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 53041.5375 13602.2017 53866.4535 134935.9408 123749.6419 74534.1871 24152.1243 53229.6846 18749.2670 123481.1469 61348.5428 65467.0518 1755444.7785 153285.7385 97770.0698 135198.6708 95568.0354 95568.0354 30494.8313 76066.2531 46727.2048 42185.7329 41220.8077 27749.0340 18908.0392 60221.3466 63341.7240 141947.1705 102914.6368 60546.0939 57069.7110 28947.8410 52621.7531 47140.1896 30507.8255 37699.7103 299767072 axe Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 23675.7875 23213.6422 26864.0625 19420.8865 40418.1358 9692.2601 22200.9558 16500.6529 10054.8030 18742.4257 53405.1801 22049.3246 426320.5255 25151.8286 19740.4568 19786.3028 15639.0301 15639.0301 21062.3038 29539.8029 23223.6005 22633.6337 21596.3249 25107.0202 11094.0258 10699.2910 26822.0544 11223.9615 60389.7629 28754.3510 64064.3443 18931.3850 16065.3867 17467.8056 11432.9096 21971.5969 261868897 mannanase Carbon Cycling Carbon degradation Hemicellulose Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; 4129.8980 5964.0466 2210.6641 2153.7554 2921.5958 3445.1689 61289.2741 4727.4174 5130.8451 5110.3522 4927.2500 5745.9083 2306.5555 2736.7450 3220.6506 5062.4501 2532.6039 3337.7408 365425162 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 34623.1240 50711.5527 9224.1554 5285.7996 20187.4717 10977.5329 14482.7378 30358.7404 10631.9557 39566.5382 28301.3096 1160014.4784 13086.2892 75550.3090 25041.1869 107190.5983 107190.5983 14496.5501 21672.0688 21354.7891 11975.9450 17313.5298 33253.5980 10071.2863 51637.8228 36412.5303 18640.6278 49845.8329 48870.8432 32185.3314 11027.0929 24115.8400 23522.9867 13385.5669 10727.7082 167584857 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7953.1905 4081.2082 4368.9952 5730.1884 4268.6728 7186.1134 127576.7342 29985.3601 4004.4086 3879.5380 3879.5380 10471.0499 2249.1312 5114.5129 14139.3791 5223.2946 2936.6910 3682.9829 328921162 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13641.3495 8738.6642 8446.6473 9326.2068 7174.4243 6545.2717 6629.1571 10591.6429 9422.1522 6641.9067 228176.1012 22306.0297 140007.6198 9927.4363 5442.6123 5442.6123 8301.2137 12315.3385 10566.3850 33415.1076 66745.9812 16816.1927 11786.2891 6531.7946 12935.3851 37779.1254 19403.0163 8848.6282 13136.4593 16509.3825 152468.2471 8380.3520 12036.6445 20409.2441 54013570 cutinase Carbon Cycling Carbon degradation Cutin Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 17382.6444 190366.6533 43252.7472 12496.1051 9264.4857 14892.6412 8154.6677 22721.8737 18591.4937 10395.1867 158508.2224 10740.0809 9339.9949 11502.6643 9771.6887 9771.6887 9896.6757 19919.0330 12993.6787 11097.5753 15582.0848 44979.0139 10390.0360 15212.0347 17671.0686 14222.3926 48347.1295 56817.3303 17140.9752 7130.5432 21648.5393 18306.5028 10123.0924 52769.7358 113877828 ppx Phosphorus Polyphosphate degradation NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 10644.3285 16962.1682 7496.1457 4562.5217 9534.8765 8006.2607 13439.6625 11098.9052 9097.7863 162827.1784 19267.4891 10812.3817 10495.2715 5688.8107 5688.8107 3443.1602 47904.7249 6925.0543 5495.5044 13136.6865 4909.3105 5379.8864 15107.9624 12035.8224 25627.0649 8914.1989 16661.1124 5794.4920 10776.9007 7434.9512 14752.7085 148499003 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 70971.3197 32146.9250 66925.1332 57766.2779 54492.5189 14275.8466 51876.3988 25297.8068 62216.0714 47955.4278 2169331.8188 47912.4401 57940.8142 78583.4312 73825.9636 73825.9636 51967.4205 73952.7054 30500.4270 44103.9068 103067.1657 105289.6088 20577.3039 41807.5275 94267.6136 57764.0543 127910.0881 197705.4161 67433.2638 26835.5914 50746.5486 48182.4974 16479.6799 21807.1688 239988535 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 53168.5060 30623.8972 69167.1782 288046.9161 99642.6509 52475.7698 34628.1216 28871.0926 27037.2226 25962.8651 35795.4810 18126.2206 645371.0764 39114.0392 50079.4173 40043.5288 61659.5694 61659.5694 20092.2794 43816.9624 22456.7002 60603.1936 46401.0837 41596.0122 16336.4267 18682.5866 54383.2853 18040.7644 46564.5936 30205.5889 46727.6239 30210.4378 28432.6486 26195.2001 24587.5031 38124.0568 307596044 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 29694.3751 2159444.3370 29839.7481 548749.7908 3336.8631 10606.8647 5018.3114 14680.8672 24424.1082 42892.6054 229557.7507 19411.7057 24964.7333 26061.6002 31600.6799 31600.6799 171106.1575 214894.1736 25781.5335 43057.9118 42968.2772 8975.7623 29674.6418 27284.9445 47440.3960 130593.7490 127198.9434 128520.4425 77540.7780 37810.5700 37261.3861 87342.3629 10872.6873 79406.3725 60593148 dsra Sulfur sulfite reduction NA uncultured prokaryote 13830.8655 9579.6414 9556.5426 15856.9027 12672.4895 8605.0013 7387.8349 12763.6475 44806.2717 6398.5518 178242.7395 12411.1570 10640.4293 7120.0496 10607.4166 10607.4166 6308.1925 11023.5720 11342.4713 5538.8545 13784.0296 10911.0246 3759.2144 5289.1922 12901.7000 9422.9441 16125.9845 12778.7346 13400.2910 14670.6409 10549.6038 15526.9060 5026.7882 11196.9851 260060837 xyla Carbon Cycling Carbon degradation Hemicellulose Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 12501.5111 6099.6344 2484.2950 17126.3142 12305.7061 4178.9697 26416.4190 24560.2567 37444.9748 3942.8298 7873.3361 5737.6683 5737.6683 3895.1527 12323.1535 5507.5879 8137.5978 5344.1228 85409.9894 10272.8516 8370.9000 11374.7559 32525.6311 25427.4768 7967.1398 3642.3251 5069.8301 5228.6346 4103.5315 14550.9204 283440837 amyA Carbon Cycling Carbon degradation Starch Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 10003.7655 74705.5696 6014.1485 4619.5143 6549.1311 4641.7049 4786.7028 3429.0731 5973.1940 300310640 cbea Organic Remediation Aromatics Chlorinated aromatics Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 29319.3221 25345.0331 19003.8804 17073.3350 10284.4538 11284.3683 40453.9113 9222.4375 22372.3092 21819.4962 32420.2964 435021.9369 20966.9940 223400.6773 24800.4398 33376.0514 33376.0514 13281.2262 80390.6602 26144.4795 27633.4376 31591.1643 31767.6835 19535.4964 22089.3000 42428.1817 39973.0071 61318.2296 50206.6218 27896.6101 20031.7477 46645.8896 35007.1539 32788.7809 82362.2704 334282980 amyA Carbon Cycling Carbon degradation Starch Streptococcus pasteurianus ATCC 43144 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pasteurianus; 4939.1245 1928.1801 3377.6208 4006.0713 64424.2483 4599.8515 3341.8004 5911.0812 5591.2113 3464.5223 4447.8437 5366.7530 9441.6267 4698.9999 5086.5301 2315.1684 3300.2703 3161.3544 2342.2252 6008.9053 315313945 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 250663.7017 48745.6783 198050.8927 55690.6008 16513.7974 60310.5181 208286.2115 78474.7982 50022.2737 105307.7679 158789.8663 1074980.3590 93479.8290 92324.2453 107305.0981 55787.5260 55787.5260 83164.7887 186202.3679 52347.5353 88789.3165 108394.3387 105667.3971 80196.8478 81350.6987 69974.7667 140984.3830 191938.6971 91302.8712 311269.1899 41564.8921 76500.4135 95802.8240 58336.2574 84547.6117 371493857 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri SR5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 4833.8335 120056.8407 3562.1041 9474.1641 19947.1847 5249.6393 2624.0114 73864.8852 4569.1068 6512.4056 2154.4700 2154.4700 5551.2859 6086.8294 4999.3751 11279.1023 8903.1678 19459.3714 3289.8850 55636.9870 27590.3998 5475.3985 6279.8214 25247.6505 3707.9204 5190.9948 327312513 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 25638.8824 23241.3159 30909.0544 9902.2341 8945.6121 10145.9229 10552.7332 11848.7909 11445.4399 23677.7755 18662.3354 253001.6029 17366.3432 14659.5219 15115.2987 10684.1372 10684.1372 9910.5504 29285.5062 17870.6351 17084.1257 20813.2601 16031.3091 9013.5813 7779.3632 18344.0567 10907.6991 44628.5808 21036.3779 23319.2455 7418.7811 14165.9496 26993.4244 23351.6579 29183.2246 134055736 nitrilase Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 12193.5221 12203.2481 22622.9362 7526.6174 5648.0847 7242.5265 11552.4924 7709.9866 146927.6792 12697.4647 10394.1133 8180.7388 6969.1295 6969.1295 6414.2703 18225.1005 10694.0205 12809.0804 13410.8563 14530.3384 5154.0406 8373.6616 13272.9031 14765.3289 25221.8775 21222.6989 24485.3645 8603.7941 10278.0095 7982.0801 13912.9040 16130.1030 262082332 pcpe Organic Remediation Herbicides related compound NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 49592.8895 205804.9611 28241.5080 11224.8821 28007.3929 7167.6002 7348.6848 4281.4656 11657.5350 18240.4692 4842.7348 240965.3174 13507.4640 12958.3927 7146.1157 7320.7459 7320.7459 54429.2774 22706.2906 12671.0374 14508.9604 31284.0928 15507.8057 6916.6047 8521.2899 14692.8559 9830.1045 22697.6106 20383.1169 19513.8613 12407.2304 9000.6047 11219.0393 7662.7858 18705.0455 328451842 mer Metal Homeostasis Mercury Detoxification Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 20310.7771 8927.0695 13768.4294 47104.1543 12283.4229 3608.9536 16315.1215 7814.2079 10409.9528 14032.5698 21513.8781 208777.7935 15940.1915 15685.1445 11517.4860 17306.6668 17306.6668 58545.4312 17764.7478 10381.4329 9418.0957 70896.7616 15686.2487 5904.8203 22750.4947 14856.2382 6382.1024 29581.5851 13886.9907 20445.0740 4494.6373 152693.1368 13920.4078 38145.3992 27590.5759 312602516 chne Organic Remediation Other Hydrocarbons NA Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 5859.6198 2085.0195 6054.0482 2494.7409 3313.7624 4313.0177 3282.0516 5226.2328 10908.7072 4092.2613 12871.1864 5694.2624 4232.2389 8187.3631 3794.8388 4891.0907 4447.2511 6633.9864 3953.4421 13404.1794 13895.7700 7598.8950 4611.7692 7288.2432 18942.0383 3853.0882 6916.6600 322419743 dsra Sulfur sulfite reduction NA Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 51574.0920 7722.4674 2687.0319 7194.0364 5602.2480 7616.8540 55889.0445 4743.4416 6342.0244 8240.8674 5292.9541 5292.9541 6198.1202 5107.1632 5521.4015 30297.4293 3403.4478 6767.3321 9745.4093 8691.0883 5788.0869 2351.5035 6068.0301 4688.1175 4028.0088 12028.2285 239832814 tktA Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 10097.2990 23666.8712 16289.2641 10503.0380 11645.4330 11703.3214 7448.6472 9307.7739 14871.4340 17049.3967 234530.0491 17356.1914 9131.3662 14977.9842 9176.6766 9176.6766 13839.8549 17878.6174 42537.2211 16430.3730 12115.0714 14171.6333 8826.8110 6563.8878 16506.6197 39575.1140 39823.8464 14398.8086 40933.0036 20038.3795 8198.2597 13856.8362 7075.7372 17374.6556 320105585 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 5012.4396 12142.0673 3323.4444 4455.4632 6309.7251 3052.2254 176663.7374 8584.8358 12099.9083 10079.1159 4109.5297 4109.5297 2908.3419 12652.5124 6618.1366 4172.7903 5670.3761 2688.3481 9170.3204 2735.6824 11244.2541 6428.8132 10123.4060 3343.9284 4067.6374 2808.5910 7350.9780 269811707 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5030.0353 294908.8699 11065.9799 5800.4906 3139.0919 8477.1167 2841.1590 66985.7681 4575.9973 8499.5701 8249.1028 8249.1028 4646.5360 5267.5018 7646.9059 11742.9269 4677.5609 3216.1639 6712.4063 16499.3132 60944.8422 6673.4490 7158.7337 6144.0923 3036.6969 6363.5347 3507.4097 8899.8976 332706841 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya majuscula 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 6831.7669 7057.0131 6603.8810 6770.8299 4434.4478 5909.9709 3284.7424 6038.4165 5641.5815 4057.5942 177188.1298 8047.4539 5137.2991 3589.6199 3589.6199 6245.6241 9542.7373 6982.2559 9350.3325 7253.9693 10923.4843 3044.0055 2933.9676 10383.0892 3674.6672 14724.0532 6004.5896 10500.3934 4484.2560 4859.2309 4347.8924 4424.3612 13448.2719 149128052 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 4930.8221 6027.3880 13734.6712 4896.3327 2974.4425 7416772 ppx Phosphorus Polyphosphate degradation NA Rubrivivax gelatinosus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax; 136612.3448 213910.0928 52591.2815 24900.3863 10114.9030 91996.0975 80699.7591 54958.1680 63405.2290 40446.8709 76044.3208 1471586.0010 50235.8413 51743.5488 77417.7915 96995.0097 96995.0097 35851.2695 94699.2460 37478.5978 43778.7983 84940.1727 99200.6222 37801.5015 46874.4991 63686.3616 27436.2303 107767.4157 69802.7576 84999.7798 25294.7268 37451.4221 80196.1538 97758.2384 57110.3278 257171267 chitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 6431.0189 11845.0629 3008.9211 25513.4292 4502.7942 9713.6190 3474.2130 63380.4212 4728.8007 5228.8102 4338.0794 11905.8724 7849.2960 7547.0387 7436.3042 13602.0648 3075.4226 3986.2319 11905.3625 3353.3918 12778.9520 9377.1699 8591.1305 2009.4860 4400.0727 4784.1196 2999.9028 7634.1244 161366395 ppx Phosphorus Polyphosphate degradation NA Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 21408.7547 6023.1971 10168.7031 16735.5676 79225.1271 6165.5767 63772.3590 15038.5039 23439.8934 12447.6423 16994.3119 247333.8841 19467.3336 24487.1256 15124.6387 32525.4109 32525.4109 16715.2533 85747.4595 19244.3599 9095.0576 13258.2144 61077.4180 177555.8987 19171.5792 31068.0172 19775.3805 43520.4568 24290.2239 20834.3231 17600.5790 13805.8712 32892.1785 10650.1404 12218.1301 147886204 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6014.5952 59455.7678 8443.3314 2815.5846 4193.3929 2524.8072 4115.3437 64195.3001 9080.6200 126135.5028 38818.4221 18689.4546 11757.1630 12938.8790 12938.8790 8819.3320 17971.3717 8100.6343 4326.0919 9548.2497 4141.2922 2254.3872 6674.2751 9783.3201 6109.1607 15054.7307 12354.0443 9702.3656 2786.8155 150509.0312 5380.2273 3016.7694 5886.9416 63081982 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 45544.3570 13083.9356 5169.9860 7287.6354 11318.1518 12376.7003 12737.1190 13638.5723 277241.4788 11584.6575 17531.3012 14174.7851 6962.1060 6962.1060 23332.7079 19720.8307 12937.5671 28478.5438 18971.6210 11475.9098 5477.7862 11167.4927 6938.6018 9414.9251 26213.7203 17168.7801 17166.8863 39573.3060 12093.9721 16900.8824 7241.0381 10637.8069 37726828 dsra Sulfur sulfite reduction NA uncultured prokaryote 4460.1341 7510.7836 6474.0178 2256.5234 2338.2753 3124.7108 3949.3042 6347.1159 2975.7355 141511.6980 5379.2958 4026.7070 2033.3943 2033.3943 3454.6633 10437.1787 6938.4948 3803.4338 5482.7048 9712.4245 2389.8530 3154.3033 6713.5497 3341.6289 5734.0701 2010.8657 3334.6530 3326.6556 2295.3444 7380.0486 125974460 tehb Metal Homeostasis Tellurium Detoxification Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7839.4202 2721.4822 2224.8856 3661.3601 3631.4159 102977.8340 4819.3858 3650.4569 6836.5689 3793.2572 6050.6131 2248.2718 2703.6415 5646.8523 8253.5823 10325.4350 5106.5203 2825.3499 4125.0631 3731.4686 7198.0173 302404391 oxdb Organic Remediation Aromatics Nitoaromatics Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 6718.2349 10248.3412 8845.7686 8858.6754 4023.7877 13775.1543 43294.3186 21025.3171 234540.6299 7865.5475 11987.2139 15386.1563 3131.2893 3131.2893 6446.1786 12984.2918 9680.4910 6016.4513 14139.2094 6060.8560 4860.7000 11202.3555 10008.0441 11647.4945 661100.3692 13848.8674 13600.9276 5895.7019 48728.2036 8910.1483 8343.6757 20227.3534 291618386 ppx Phosphorus Polyphosphate degradation NA Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 31416.9709 2685.6365 2387.2821 104496.3427 2961.7943 4857.1341 4465.2409 6700.4022 3041.0010 6304.0113 2480.4454 9872.0648 6243.9217 2203.9362 119693872 catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6885.0716 6186.6296 22666.4968 7184.7041 3430.9285 152473.1909 9162.1930 4462.2384 2816.2184 2816.2184 3626.7463 7841.1104 7153.9267 8596.9752 17494.2424 4971.4531 3705.2676 6934.4953 6692.4907 3593.3593 11261.8158 7445.4757 11920.1776 2934.0445 12698.9907 9603.2506 2773.4692 325281074 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Odoribacter splanchnicus DSM 20712 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter splanchnicus; 8919.9966 5965.0197 11273.3131 5921.3617 24099.0028 6446.9865 9659.9486 3451.2312 153098.9941 10339.7710 6173.5331 6768.8125 5545.0332 5545.0332 5725.9233 14013.6694 7994.7668 7259.6599 6780.8008 8533.1709 10151.6154 4231.3402 7976.1943 3409.8443 12535.9766 4304.0586 11530.6191 3808.0633 9855.4836 8202.7751 5022.7917 10164.0060 4755082 nasa Nitrogen Assimilatory N reduction NA Klebsiella oxytoca superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 12264.5688 8751.0772 6297.1407 13207.4803 11113.3990 13654.4643 7430.7755 13167.5527 16337.4146 8396.7068 199958.8564 16890.1389 11874.9610 8664.4049 8171.4125 8171.4125 7531.0433 16503.2412 16285.8403 8533.5268 7277.1767 19527.5496 6743.7285 8604.4497 30102.6893 10991.7304 8571.2042 14347.3318 27728.5857 10901.6134 10591.4722 10420.5255 11589.5466 11805.9693 160917512 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 65066.2018 32255.1544 27128.6023 69289.9566 23539.6063 37602.8630 47030.9062 14785.7215 55686.8687 153198.5038 57692.8433 1443011.8424 49526.0024 38727.1883 75542.9386 99451.0383 99451.0383 70120.0005 100271.6027 71884.8289 115926.8196 79245.3771 73888.7673 173063.2866 71199.3865 75342.9032 46783.6736 128093.2608 60250.6703 57113.4091 52682.9241 59946.6286 33888.2404 383341.9913 108637.2772 334123694 amyA Carbon Cycling Carbon degradation Starch Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 5212.9746 18496.8113 9797.2901 6625.6712 5826.8236 8305.9091 7820.1873 3183.2988 111009.3285 6735.0906 3822.9751 9270.8377 3564.3497 3564.3497 3104.9167 9492.3643 4712.0427 4035.8313 7011.7815 10469.1784 6078.6309 8525.1359 3081.9822 10602.4315 4323.2603 26864.2814 1792.5802 4423.1528 8084.7636 2917.5653 4166.0922 393771257 terc Metal Homeostasis Tellurium Detoxification Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 35682.7150 55134.0765 40282.1807 174905.9359 74695.4036 184790.2440 85040.9625 39034.2954 37837.5899 59120.2642 40031.5491 1428208.8395 69642.8442 56059.8474 49894.6493 20406.2607 20406.2607 20359.9418 57842.1367 42683.0965 51116.3937 89483.7381 69236.0065 25771.9003 30897.3652 45747.5957 30349.4691 95625.3925 54261.6461 65531.2211 40798.0684 29646.8896 30414.4474 21156.2961 52672.0048 308058261 tehb Metal Homeostasis Tellurium Detoxification Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 8840.4229 3240.8212 4817.8684 70845.0713 3965.4366 4846.3307 4008.8833 44338.8016 58355.3441 8246.4452 14062.9878 11674.4522 15782.9374 67537380 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 3997.3278 4873.1394 2562.7625 5741.8607 4432.9586 2195.6898 103914.5365 3728.3119 1896.3977 1896.3977 4435.8028 6685.4959 5172.3860 3890.8405 54723.7041 2125.4989 2228.6083 6751.3254 2539.4583 25238.0821 5789.8938 6167.4312 3712.9276 3844.6195 3106.8674 2824.6766 4830.6632 384071524 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 103737.3905 56007.3203 299247.8209 114116.9585 37142.5093 90369.7723 167636.5074 55338.3495 42812.5464 237461.4938 61204.7314 873255.9483 73730.4719 115704.7008 106162.1611 112663.2912 112663.2912 126724.3973 164678.2112 71485.8742 130076.7963 101419.3835 73976.4922 54634.4470 93450.5313 83287.7793 110871.9753 146098.5049 113412.3652 87714.8598 62400.8390 104189.5792 147794.9881 73767.7117 68157.8407 149927838 dehh109 Organic Remediation Chlorinated solvents NA Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 49232.1274 107024.7711 50719.8984 10032.5987 14124.0493 7799.4825 12342.7457 23400.3425 10048.0976 213622.4015 11098.4938 10968.4687 8945.0835 9386.5268 9386.5268 8853.3134 25023.7129 11559.3093 7105.4215 14917.8433 15266.6446 8072.9097 8962.6243 17350.4900 26313.0899 34720.7840 15401.9680 15635.8333 7201.2099 10128.3955 9114.6676 9100.7643 11665.3416 306487951 nirs Nitrogen Denitrification NA uncultured organism 10483.0345 13789.7624 5639.9046 7810.1912 4063.1396 6876.9358 10040.5564 4604.1613 148035.9950 11533.1059 5727.0128 12626.5151 4488.2129 4488.2129 7130.1587 13433.7328 11290.7230 10154.5531 8055.0290 4936.9039 6133.2278 5769.4100 15301.2385 5167.4139 6338.3972 10472.8835 18092.0597 4894.3039 7107.9997 8155.9434 5762.3776 12023.3836 299755823 cellobiase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7754.6001 2123.9344 3886.2164 3373.9066 5102.7868 15274.2170 4849.6553 134898.9123 7744.7501 4957.2955 15820.8626 4705.3966 4705.3966 3020.5874 21243.8576 6069.7607 8729.9660 24933.8684 10080.4931 3116.8352 4549.5300 19796.1349 3555.7776 31312.0594 10110.4419 20285.1174 2958.7431 8843.8204 5923.8630 2561.5978 6361.3644 197714046 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 47605.4494 11173.0179 9635.4534 12683.7326 5141.3422 15752.7250 9015.3871 3766.3112 8433.3018 7483.7955 14663.8631 292128.7230 13248.9812 17100.4431 19814.1885 24931.4378 24931.4378 8124.9419 30720.5278 20085.2111 21885.1089 31899.2355 33849.3889 10931.9232 10713.5210 20450.0474 15219.2146 37888.2185 22012.1500 30813.9362 54065.6726 10217.8839 21754.4577 9423.5614 25192.1996 164455740 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6157.1959 450783.6149 13779.2019 7079.0536 13636.9923 5417.5902 3317.1557 5264.5514 31560.6458 77175.7538 8696.2849 6791.5467 41019.2577 3178.2950 3178.2950 3610.4023 9462.8871 9616.9557 5839.2251 6120.3618 3150.3254 9047.8775 11884.7917 4133.8549 15390.1241 7723.5929 10999.3244 4871.9827 7293.3719 5007.0291 4699.3001 13946.4088 148838733 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 4855.4333 5384.4622 4189.5646 92597.1665 6580.4712 10407.0192 3672.8025 11054.0873 5640.0823 5766.5977 6273.2925 10132.6804 4277.9859 3200.6474 6835.3814 2690.6682 12732.9666 9706.9234 2516.3651 4255.1372 4503.3662 2558.1188 6316.8936 261857106 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 100916.9675 31259.9319 61947.4150 18058.6597 58623.0018 13477.0968 20226.3028 92849.9736 26027.8627 54637.4425 42332.0625 79712.6375 373161.4595 18227.0861 48670.8284 72730.2296 70280.9987 70280.9987 118093.9668 75596.6396 40985.3520 55156.6178 74920.9455 33735.2019 31465.3838 35794.9417 40933.8279 69287.2075 233623.2558 72758.5825 71402.7751 38240.3373 35432.2114 47938.8846 43874.4262 54382.7664 145221195 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 18205.6925 5371.3940 5371.3940 4558.8209 6997.7454 2637.3535 83415007 phenol_oxidase Carbon Cycling Carbon degradation Lignin Termitomyces sp. NS/Mg superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 8290.4039 6066.6070 23479.0812 20020.5694 6806.5212 2658.0446 12840.2244 8384.0142 6724.7542 174861.9133 12318.4989 11424.6521 16470.0113 3476.8774 3476.8774 7019.7925 20957.2283 9925.9730 13777.7864 20240.5550 11686.2487 7957.2878 17191.8040 10509.7170 7742.8110 24408.4993 9354.0523 14804.4901 7072.8115 6966.7377 9854.2692 10108.0893 12216.8089 359820071 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 33535.3005 6144.9861 12058.8081 5698.4533 56279.8675 4458.7410 47463.7196 16829.5635 10705.0567 21287.0106 312125.3195 28577.3948 28803.6664 50763.5757 11457.1520 11457.1520 6026.3646 36171.3254 7257.3279 21781.9739 101304.1170 16068.4704 9447.1128 32331.4649 22809.9724 29095.4028 41817.7460 17895.7210 84013.5854 28361.3204 19373.7453 24308.2471 12307.2477 10146.1900 358237744 amyA Carbon Cycling Carbon degradation Starch Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 5388.2336 13531.6602 126478.2375 12573.1495 5233.5798 2696.1846 17234.4620 208262.0534 4530.7849 4217.3831 7164.8558 3839.3387 3839.3387 58368.4496 7776.3243 6733.2002 5108.3694 6869.7833 23592.2547 10103.0646 11045.2584 9701.4345 3062.6649 5464.3334 3378.3226 3694.1654 148518215 poba Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 135437.4895 26591.7195 80897.2091 65425.5429 27601.6731 11834.4744 60742.0375 138914.5759 41852.7321 200591.7462 121028.5663 87225.3476 8779356.4988 52483.0328 247981.8969 119416.4374 61856.1656 61856.1656 74757.8534 93323.6883 67896.4737 105996.5884 140730.9932 68736.5175 52005.3185 81054.0575 159096.7149 86294.6716 207953.5360 146784.1704 184255.0345 52209.6918 75031.4551 201363.8753 81237.6758 84869.7261 214039575 arsc Metal Homeostasis Arsenic Detoxification marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8197.9364 3926.0735 6892.6071 2191.2189 7354.8202 2403.5913 58670.5693 6758.2008 3439.3838 3439.3838 3388.6603 7156.3166 4963.4266 5189.4623 4820.5347 7730.1896 3601.6502 2568.8515 10990.1562 5471.0521 6049.1325 3999.8988 5250.1496 4864.6110 4310.1576 10949.9394 89275961 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 12996.6894 586741.5695 14406.2373 8367.3570 10685.1158 10004.0095 6276.9370 6502.9688 167673.4359 10049.5467 30626.7537 11224.8305 17397.6774 17397.6774 6047.5681 17014.9390 9566.3881 8871.3325 21370.1707 11543.4445 16500.4867 22377.5393 85241.5122 35456.5115 36360.9437 16969.5368 19678.4999 9424.5067 21416.7529 17312.5724 9727.8247 5799.0560 62149186 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8888.8712 18456.4778 4903.1941 4425.2735 3247.4583 4688.0784 7095.0338 3388.8955 126924.8860 7004.6420 13125.9196 8259.0336 8259.0336 4131.5142 9418.2763 4000.8156 4265.9094 4590.4913 3187.1556 4619.9485 6301.2910 4224.1272 9186.6255 11209.6494 9912.4248 2702.5574 5032.6690 4170.5131 19907.1658 4872.5266 217991638 ppk Phosphorus Polyphosphate synthesis NA Bacteroides pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides pectinophilus; 16832.6652 10511.5361 2303.0822 1998.7402 2950.7537 5517.9254 5547.6963 2633.1490 84025.2385 4252.3548 4793.8140 2486.3336 2486.3336 2795.3520 7056.1534 5467.6607 5952.0106 6174.6915 2145.6132 67659.8359 7762.1048 4275.5449 13358.8586 6061.6843 9155.8466 2819.4217 4538.3249 9737.1906 6918.8816 11223.9823 195970039 mer Metal Homeostasis Mercury Detoxification Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 36893.4069 6135.2179 32209.5611 8973.2663 5269.7906 128582.6495 27321.2428 11746.4932 9752.5432 18120.8830 39167.1573 1016273.9576 37024.8502 41637.4455 24661.4985 22572.1487 22572.1487 151172.8422 62606.5471 20110.8598 14029.5018 29587.3503 8571.6382 16321.4007 26709.7758 32269.0769 68517.8469 130486.0345 166064.0513 24945.2991 14314.4637 28869.0267 98789.4795 14174.7761 255529.9646 360038705 pcpe Organic Remediation Herbicides related compound NA Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 15248.2839 38928.2570 6156.6012 30433.5130 15939.0630 16321.4092 16188.4681 14061.7112 12029.2425 35960.5427 86931.4114 116234.4841 15668.4482 16639.6658 15765.0133 16764.7693 16764.7693 9992.9734 58892.8973 21726.0102 18588.2304 61298.9218 12435.1145 6771.8363 21973.1730 21386.5408 40860.1502 55650.3906 17534.7779 46989.2547 9475.0369 27104.1689 25201.8465 19016.4941 51669.3202 198284920 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8149.8093 10159.5185 26096.6108 36340.7217 5189.6389 8046.2838 4491.5570 5022.9979 63858.2709 9788.1356 6718.0167 7181.3463 3198.8295 3198.8295 18811.6035 4166.0156 11339.8240 6040.1898 26252.3858 2331.8459 5507.8872 3436.8384 6151.9846 7837.5772 5003.7680 4966.8250 17804.8717 3898.1017 19642.0978 83025964 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4855.4219 12293.6182 4894.6719 4478.5313 3828.9850 3344.6757 5213.5345 2574.1354 6068.2497 2566.7519 2747.3406 3344.4666 3533.0988 3511.8847 11205.7981 300705081 terc Metal Homeostasis Tellurium Detoxification Ralstonia solanacearum CFBP2957 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4196.7828 9323.7537 2787.2435 4273.0856 4473.4408 2260.3941 89548.7070 6302.0786 5336.9042 5111.9429 2610.1730 2610.1730 4235.2216 11024.6499 6554.8797 5129.5315 10665.4932 5040.6349 3228.3683 3376.5010 9304.9845 2305.5741 12928.5414 5917.4219 2670.9105 2520.6270 5192.7858 3717.4012 5322.9990 386385908 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 244323.1257 235669.3857 182104.2910 163801.2009 235208.5037 90552.5028 268503.5178 124814.5388 120240.2905 171836.4286 626498.7149 285857.3978 4283548.9306 186195.5291 354142.8615 672195.6064 282151.8811 282151.8811 224757.0197 160870.5329 94966.4302 277461.4376 438374.6044 881894.8573 232722.3531 138157.1243 466003.3601 124056.5279 758138.7870 583851.2636 189798.4009 129347.3444 252957.9344 146124.6694 140230.3908 251799.2813 323366408 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 12051.6385 8097.0317 16706.7167 12068.6557 11582.9426 11431.9502 5032.1015 12105.3696 9228.8724 9432.3192 293848.8749 14060.0526 13342.5778 6832.1067 7140.8550 7140.8550 13364.7509 19447.2084 13254.7948 14983.2531 13725.0712 18857.5432 8157.6195 9538.4969 21935.9796 8147.0076 28832.6604 27912.4035 19353.7180 6313.3411 8498.4069 9238.4753 6883.0005 18179.4212 145352813 Sir Sulfur sulfite reduction NA Ostreococcus lucimarinus CCE9901 NA 27719.4866 10765.4109 24400.2534 16107.6428 6902.5751 40719.9837 14809.1814 9907.7853 20846.1343 16141.1539 8714.2844 433793.0100 20476.4084 20803.8278 12796.0664 9250.5100 9250.5100 12877.5466 25822.8608 21126.3845 22663.0754 18895.7058 31201.1176 10514.2587 8674.6090 22044.8488 11398.8979 34722.6493 12076.2861 20893.5991 10948.6737 10417.6852 15320.2620 12580.5617 30075.9515 302416491 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 154851.2906 421143.7744 189848.0954 1075788.2284 54193.6484 51044.4079 214905.9206 155081.1003 49616.6634 114439.4042 364434.0544 146090.6775 4370807.9449 197533.4942 199648.6828 432115.6541 185375.6966 185375.6966 136699.0272 161039.9241 83177.8810 227662.8510 127112.1424 308616.8023 188360.9051 181639.5003 154487.9531 129527.1407 277524.1380 166666.8106 174331.5494 207496.1768 147955.8077 126751.4678 194255.0728 385384.2706 398131786 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7034.6545 5661.0203 10996.4603 13823.8967 5135.0487 6315.9468 5499.1919 94356.6147 6942.7397 7604.8620 11616.1344 4520.4174 4520.4174 3940.7093 11536.2358 9946.2933 3934.8674 4991.2578 9440.8949 4851.1079 7431.1546 7409.7915 10426.0749 15207.7347 11945.7342 2404.0463 8831.1486 4290.3218 3296.0526 9315.6306 209498510 urec Nitrogen Ammonification NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3950.5064 3529.7322 6089.4942 15600.2989 15040.9689 15450.2318 3436.4885 88624.3219 8831.3119 9332.4857 4951.6872 5893.4194 5893.4194 5133.2706 15410.5030 9721.4062 6695.9443 69048.1511 9591.7841 3249.7424 5696.3601 8016.9515 40942.0474 36553.4443 15942.0240 10260.0075 33195.2425 8707.3395 50592.6175 6733.6466 14216.0473 414593072 nfsb_2 Organic Remediation Aromatics Nitoaromatics Escherichia blattae NBRC 105725 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 4887.1256 188931.9980 68607.8453 7329.7834 2007.4458 2801.0897 6690.7569 3495.3267 4197.6579 68272.4344 6558.3936 10825.4516 10825.4516 5086.7983 11061.3099 5698.1456 6971.8854 11094.0735 334562.6649 5201.3220 6678.0216 7368.1107 15554.5879 7579.4058 7055.4449 3046.9383 10615.2478 12535.5349 3519.0655 7407.3049 221636204 arsc Metal Homeostasis Arsenic Detoxification Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 6793.7523 5198.9246 3707.4932 4814.1773 3859.7473 4410.5515 4271.9745 201908.2469 5438.5460 5240.5270 10322.2711 17003.6585 17003.6585 8677.0487 5394.9948 8781.3161 4912.7720 5136.0367 11944.6594 5313.3227 12642.0127 7483.9129 10321.5736 4422.5395 27693.1170 7584.9778 6877.1695 296164441 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 4409.2812 13296.0661 41846.7919 3238.1175 7243.4652 4299.3343 4379.4273 16829.0052 7988.4503 2596.0428 2596.0428 3709.8283 8888.0678 4535.2869 4858.4815 11477.0098 2794.6747 7476.1820 7531.1466 24714.0010 8126.6932 10076.3200 9855.3479 4271.5695 3434.3569 8125.1838 3611.6305 6560.0814 257064655 ppx Phosphorus Polyphosphate degradation NA Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 4337.0641 8839.6792 7218.2044 2533.4661 7280.3810 2446.3824 9216.4466 5288.1184 2732.3236 2272.0529 7044.5631 5729.0871 3750.4629 3195.3455 5829.9231 95025963 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 18506.4320 9859.9081 9351.3829 17074.1832 15987.1920 12978.8746 11418.8046 6985.1607 17846.6196 24660.4847 9333.3001 252252.0076 27268.4842 16783.8058 14217.9521 17333.3464 17333.3464 9495.9803 24998.6771 16782.2657 17594.4443 49994.5355 19399.6839 13051.9709 22936.1825 19603.8536 12324.5777 53558.3402 31200.9750 32098.7797 11470.4527 32736.5929 11801.5151 12553.8840 19087.5866 290745582 nirk Nitrogen Denitrification NA Afipia sp. 4AS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 9795.0416 67774.6063 7368.9558 2989.4886 2989.4886 5416.8650 4668.0451 373464240 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 32185.3487 69665.3348 18613.3965 17239.0696 27999.7637 16513.4025 14423.6380 20795.0529 35680.0450 13390.5231 479151.6428 22414.4562 26386.7818 16312.4436 15216.6654 15216.6654 21251.3987 32112.4663 26627.8133 1322216.0819 31741.0734 44682.6370 11828.5824 13639.8719 37699.6162 18909.0970 54244.2284 25847.4350 28042.5530 102646.6322 23584.0268 18069.3637 13592.1472 337784.6119 365275064 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 17691.1073 8265.1542 2395.0062 4835.0698 3326.0244 8401.6975 11719.3972 7553.4821 6783.5342 10159.9693 43111.3555 43111.3555 9650.0428 8022.4693 13719.0274 5937.6565 2850.0957 6407.7418 5650.0360 9004.8666 28003.3930 10149.5345 6607.7152 4397.7405 11281.6567 34183.7804 3617.5547 6707.5162 385789118 gdh Nitrogen Ammonification NA Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 154297.1813 37366.7296 15667.4890 32574.1473 9607.6461 8299.5205 71219.2597 7373.9003 17401.2975 15727.7201 14557.3613 450692.4883 75649.4734 32812.6035 13474.7124 11166.4065 11166.4065 15839.8772 23842.2107 19626.2087 15251.7439 18080.6041 56135.6188 15011.6188 11095.1033 29934.7649 16372.0767 264201.3228 25103.1570 23357.2651 12425.8857 10210.7554 12195.2345 6356.2541 21733.9244 157679123 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 12103.3556 40283.1408 18095.1554 11397.7568 3722.6973 11211.2145 11236.1014 3616.8780 139021.0242 4484.7513 6520.7123 14160.8228 4148.3351 4148.3351 3823.6775 12147.4992 5718.9080 5793.4860 5895.2179 5326.0267 2547.9618 8634.5465 3032.7493 12156.6653 5472.7263 33577.6920 3420.1096 4117.4166 4613.2352 3286.7124 9862.5501 256393366 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 109288.7027 3997.6330 2759.3905 2627.2595 6555.8535 4076.9183 19109.6620 95590.9034 5144.8867 3654.4220 2617.4929 12196.7000 8952.0956 3780.5154 4862.2940 4052.8800 2853.9102 2505.0653 7389.3842 4299.3259 14977.5068 4207.5974 7313.7025 3343.0414 5622.4768 3446.3911 2977.7879 4350.0001 148628249 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 13059.0643 26409.5245 6862.0453 6630.3219 7323.0193 24453.3870 4928.4487 2023.0664 5436.9389 7831.3681 4261.0068 105084.4366 9800.8216 16512.1485 6346.5340 10214.6591 10214.6591 7182.1829 13210.2353 8420.5274 5118.3967 10453.0911 30708.8642 64985.2769 5963.8684 11626.8916 3627.7512 11073.2785 8163.7355 10318.4116 4344.8215 4819.9425 8085.5197 11079.7989 250987.6566 16754883 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6679.6627 10472.9226 5006.7425 10721.9534 8654.4422 3569.1196 6649.7045 97825.5922 5797.6861 5128.5166 5129.1139 3802.5092 3802.5092 3021.6783 10500.5133 6959.0580 7071.0112 6562.5741 27086.5619 3595.3362 8584.6972 2482.1355 30329.5777 9638.5915 32400.5031 4749.4299 3575.2918 5671.5082 3160.6881 6891.3281 357428230 alkk Organic Remediation Others NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 195227.6909 13478.9877 5768.2370 40519.8971 17291.4798 12471.6782 17342.5981 15627.4161 36375.7900 32821.4856 55449.1092 422554.7450 80556.9295 73655.2382 46194.1646 152201.4569 152201.4569 38637.0091 47862.8022 28019.3225 48921.1918 129130.8891 97430.0928 23052.6893 40553.1351 33945.7873 60627.3181 62731.2284 39874.6714 44864.1280 78486.3249 31021.5877 42638.8444 32498.0784 132779.5306 260464249 glucoamylase Carbon Cycling Carbon degradation Starch Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7159.1487 20795.5804 7127.1163 28460.5752 8987.4132 20326.2398 5218.7226 26492.3721 7712.5948 9465.4449 15501.4256 5012.5767 5012.5767 28720.2004 21488.7518 13836.7272 75753.7826 8487.8677 3162.2222 33077.8916 3951.4240 25213.2313 6803.4311 10337.6519 5473.8409 7091.1644 5174.2511 3144.2045 8623.8354 209530632 endoglucanase Carbon Cycling Carbon degradation Cellulose Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 163897.3347 30365.8593 81717.0170 104443.9331 99713.0195 14077.5267 35145.9832 89332.3277 35835.1992 78179.6871 124969.6501 72478.9812 1114315.6359 95890.5324 110865.0203 151209.2870 196593.8419 196593.8419 45718.5298 90177.2671 49870.1977 271107.1704 162884.0158 152316.8286 46171.5158 48752.5899 119559.5132 27470.9087 136723.3541 84664.2262 114046.5969 68630.3210 56257.5924 61588.8364 51337.7475 93895.2933 381381493 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 15990.7895 1121122.7065 9148.3311 9691.2962 5051.7154 10304.5865 9011.5706 7006.8821 12414.3809 11690.3104 127071.0226 8840.8104 8103.1660 65365.4812 11822.2397 11822.2397 9314.9134 21191.4155 11899.3855 14213.5997 8267.1042 18508.2237 14793.9791 15282.8270 16818.5119 6668.7703 21026.4555 6343.4556 21513.6592 7188.9087 5899.0243 12281.3247 8563.5418 9130.5598 91693851 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 4378.8627 7394.9652 2326.3631 2127.8255 5136.5619 2784.6809 175771.6052 5323.0939 6916.6295 4740.7417 3477.2767 3477.2767 9729.2148 6681.9078 6337.6005 9006.3742 6481.0966 2716.3370 3878.2162 6265.5865 10087.6569 8381.6631 6768.3541 2043.6120 7310.1340 6688.7507 10459.3014 251789624 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 88615.4527 82095.4325 22163.3440 17545.1206 10247.7066 37448.1416 143467.4732 23485.4087 55899.5991 1140006.5020 32393.5331 574360.1449 33657.6729 37490.3737 127157.6749 27302.0872 27302.0872 20306.6364 53597.2683 36089.0354 45742.0918 40914.3353 56974.1652 18612.6910 30724.1757 46746.0032 22374.7153 62271.7074 42377.1794 37773.1845 17048.1971 30049.1054 36187.7927 22125.2810 65700.6597 78169675 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 129115.9655 11360.4774 10138.9218 9293.2581 6322.1658 6191.7942 13690.6018 11472.4308 6703.8300 191760.2156 9820.0115 12830.3574 7483.1739 7911.6368 7911.6368 9693.3929 22838.7432 18571.9745 48321.4289 15764.1837 15444.6250 7099.8182 8615.0133 16477.7174 5624.4343 25111.0160 11599.6559 16105.3602 5566.7079 8586.0066 7942.8142 6185.2300 18898.6500 227483359 tktA Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6021.0334 6807.4078 2214.8063 5637.2224 3982.4819 3756.8635 97577.0517 2165.7253 2165.7253 3152.9659 7649.9110 4305.3663 4289.7271 7289.8852 6317.2747 3055.6300 6239.7108 3020.9418 9311.7736 7111.6117 8433.5174 4018.7363 4255.3838 5098.7710 388530040 b_lactamase Virulence Antibiotic resistance Degradation Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 4183.3555 4061.2834 17198.2329 9146.0010 3089.2747 3176.1345 3150.3139 5331.9186 8761.9879 3266.6453 143127.9362 9112.1740 5951.9813 8049.7395 3811.4865 3811.4865 3346.2532 10620.4475 7596.4748 5699.7337 4242.6475 4866.5179 3898.8418 5721.6854 9034.3079 4429.4305 17792.1776 7328.6541 9378.2413 12893.6826 4642.4101 6013.0189 2151.3213 4974.7420 199593971 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 61845.3143 8473.1739 6284.2068 11238.0384 7922.2706 9842.0906 5124.9101 8431.9012 80520.1110 21561.0828 315152.4485 37871.9227 16080.9319 23133.0030 6098.3541 6098.3541 26313.7065 28508.8415 26026.4160 18852.7009 65320.1569 25239.4003 22049.5255 14135.5876 34994.0209 16075.0909 38816.2953 33554.0038 18834.6112 9509.0300 18057.2575 31591.7729 11604.8237 77393.0762 241871971 amyA Carbon Cycling Carbon degradation Starch Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 77861.0308 6191.3083 18164.6086 3315.6088 10272.3941 148474676 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4418.5400 20537.9000 5586.7395 12737.2075 2397.6735 4450.5352 320008773 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 26311.6969 14196.2145 9257.2757 52245.3720 10153.7712 15266.1565 45223.5027 13463.8717 25611.2815 21584.2292 11802.0165 345389.4059 27936.3126 19349.9644 12001.9293 8629.7269 8629.7269 16684.4320 26512.9660 24027.4493 18915.7296 43846.6873 28854.3625 15691.6775 12117.5721 24030.5628 13897.3149 42917.3110 27512.2543 36998.3450 21297.0707 15396.9369 19363.2615 14002.1441 25528.8424 315593297 amie Organic Remediation Aromatics Other aromatics Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 10810.4675 5616.7639 172289.7237 6659.3629 4461.0257 5542.6674 2426.0141 2621.4118 2623.5484 5901.7639 94471035 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11428.2683 5909.2459 17028.3279 9368.0970 7419.0370 5701.0100 6918.5223 10728.9097 5428.6813 136352.6890 11216.7397 6216.2644 5093.7984 5093.7984 4617.9684 14563.6243 8521.5895 9049.6652 9148.2606 14928.4694 4016.4659 5770.9050 10932.6284 3943.0983 33272.6532 7847.6644 14772.1855 3661.6577 6664.1450 6778.0518 4874.9579 12461.0439 119670394 ppx Phosphorus Polyphosphate degradation NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 612999.4370 3119.4662 12330.1990 4389.4307 6360.0774 6360.0774 13341.6460 115558.2493 3063.7249 3557.6907 39843.7874 157168013 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 8417.3097 6955.3827 5074.5414 5811.5064 4300.5861 5683.8058 11988.0972 84284.5237 108410.2756 9853.0583 8147.2584 7567.4317 4423.9650 4423.9650 9670.4399 15232.1216 6937.8897 10389.6393 9962.5282 9990.0451 5717.1715 8283.3974 12955.6419 4993.0700 13406.5561 6458.3678 24176.0979 5540.0570 15787.8481 7621.6433 5765.7919 63665.4754 352081390 Sir Sulfur sulfite reduction NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 5984.1571 5332.2706 4944.0797 5904.5778 3495.4521 9007.9847 34458.2007 9262.0988 99190.2750 43036.5145 15468.9585 15468.9585 9214.0971 3467.7449 20274.9877 33496.9746 72499.6515 7404.6117 4830.7469 6348.9359 4886.7820 19206.8672 4952.3933 15175.2293 9271.1544 10007.9155 22766.3926 5659.7317 13642.2451 396584069 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. ICM47 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 67750.8945 30154.6190 547582.1480 50062.9708 271880.7707 37446.3075 122387.1322 53281.3056 46235.9884 73578.3422 111235.4617 80966.8710 2203667.8072 46304.3760 78466.6006 183415.3638 135890.6959 135890.6959 42932.2126 62690.4365 50174.4207 194186.8816 184361.9657 137589.0195 32189.2166 50476.1654 62118.6576 60475.8566 198639.3785 294548.0691 72009.0318 23615.6725 44777.2567 39175.7630 50011.1559 105017.8107 328839602 amyA Carbon Cycling Carbon degradation Starch Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 22884.1578 7373.4363 4568.0566 9274.7545 5522.0129 5178.7036 5730.8735 8089.9357 5739.2622 14704.3113 118586.6999 8480.8888 5702.6445 5876.1176 15447.3157 15447.3157 4375.5334 18344.9520 3610.6631 9850.1433 8730.3754 6509.2786 5408.1608 6324.8258 9750.9286 12285.7992 15363.1912 6182.9811 11442.7544 2514.5786 5908.5601 5849.6127 3345.9736 40743169 pcpe Organic Remediation Herbicides related compound NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 11412.1711 7357.9160 2668.3504 4308.8476 3703.2954 10851.2335 8823.3064 7954.7430 93409.5912 11372.6367 33046.9140 6837.2795 6837.2795 39601.8897 18634.6542 9475.6928 6160.8028 17619.5526 7181.3385 11053.2696 5711.4927 16937.8743 7559.0426 16409.0900 14876.5802 14642.5205 4174.0269 8959.9815 15700.3808 5893.3440 153844.4172 405106231 ben_bcla virulence NA NA Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 5652.6211 373103261 qorl Organic Remediation Aromatics Polycyclic aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 11220.3356 7031.0157 8042.8398 9095.1620 6164.4455 5300.8149 3559.8663 7046.6499 8883.6294 5357.0138 157519.3392 7778.9117 9335.5809 7126.1918 4096.9685 4096.9685 6803.6186 13194.3306 9326.8198 66902.8532 11583.5779 21063.9430 5018.7578 4903.2233 11864.1877 7451.9736 16176.2516 6858.5136 12269.4489 5001.1932 6566.1668 5888.5099 6313.6943 15135.6061 398043222 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11438.8744 7564.5796 7103.0444 5204.2667 4679.8091 4385.6455 9545.8869 11868.4513 6689.1737 178800.2246 13677.0559 8458.6106 6567.9959 4199.6162 4199.6162 6098.8517 22040.0327 15545.1442 8082.9833 11095.7531 12273.2528 6071.7829 6796.8612 9541.3782 4055.6359 15460.9662 4240.4090 11190.8971 4046.4552 7062.7224 10243.2326 4308.3363 13168.1759 139478567 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 5428.0689 16591.7088 13778.5300 3252.6848 2360.5306 5339.0181 3678.2205 4934.3760 4154.1133 4154.1133 4273.6561 512999.7377 9998.9101 11622.7367 2510.1513 9109.1590 2479.9566 9509.1338 6708.4733 7279.4102 5062.8544 3645.6024 6723.0845 2501.7544 339513588 ppx Phosphorus Polyphosphate degradation NA Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 5020.1554 4590.0447 5132.3346 4491.2984 4226.9978 63917.2240 3491.6017 2402.1575 2402.1575 10662.5906 4255.4153 322770.1408 4722.7795 5656.4995 7724.5273 3924.0059 5777.6883 5514.9891 3327.7557 4212.2756 3444.4972 2284.4736 6085.1461 383829058 vgb Virulence Antibiotic resistance Degradation Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 4993.1869 4601.4390 2769.6104 40788.6326 4008.6194 272693.9714 4269.0355 6309.2307 9573.4859 9573.4859 6679.0099 6966.9406 18582.2259 5394.6404 65215.9996 5021.5892 3741.9593 3178.5062 13786.2290 5117.7695 3543.1843 6037.6029 3062.3715 161387290 pcag Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 34432.6377 22422.2099 36926.4572 49613.2736 22890.8553 7611.5630 20197.0949 31247.9054 20446.8382 28107.9539 204385.8937 73485.6565 792741.5300 22028.1270 50555.5957 95117.2258 22948.0496 22948.0496 44651.6966 43734.1179 34379.1642 44655.5210 128746.0302 25680.1128 39825.2963 16420.5784 41074.8462 22278.1313 175351.7054 63312.0437 50395.3565 23571.5075 28755.0548 71715.4336 18817.6133 39148.8096 15788869 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5402.8787 4784.6705 4908.9570 4127.6973 4416.6393 4448.9004 9570714.1999 6125.2563 6174.6538 14656.3361 14656.3361 4026.4872 9364.4466 6306.9920 4571.1375 32074.5612 8675.3303 2985.1789 8231.0994 10762.6339 8796.7117 30352.7307 25375.5737 17478.4919 5186.7482 7906.8895 4224.6184 3089.2288 11131.7068 332667792 cysI Sulfur Other NA Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 135206.9285 10612.9061 16699.0521 33568.7384 17773.6075 22174.4336 45485.3623 33705.0017 17821.7900 22483.1659 76931.3845 68327.6075 611673.1339 42754.9642 28794.8426 40741.9914 71455.4963 71455.4963 20835.6889 56255.5697 22784.7849 34322.4823 50943.0712 34086.5776 18129.9344 17835.9502 42921.0406 19074.8838 57436.8275 35623.6097 75107.0454 11652.4303 20954.9986 26852.1133 65475.6899 58228.9338 312897384 nifh Nitrogen Nitrogen fixation NA Megasphaera micronuciformis F0359 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera micronuciformis; 4699.1816 8014.3261 3841.1352 4694.6948 5178.3609 4625.4854 8232.9910 5117.4608 5142.8157 3572.0317 6277.0307 2269.1532 4301.1503 2371.5578 6236.0689 322711361 ara Carbon Cycling Carbon degradation Hemicellulose Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 19228.0843 9676.5317 29754.4252 10415.1498 5895.9197 14988.2005 12666.3368 7484.4754 13877.5440 11710.9197 9788.7970 403783.0256 21048.2440 11169.8397 9222.0552 8049.9803 8049.9803 11979.7407 36165.4194 19303.8964 14173.4347 26788.5440 19386.3381 11971.5914 9307.0718 20181.5111 10914.5360 43581.5696 12284.2601 22022.3130 11232.5843 16920.8800 11435.0408 7747.7777 20673.2929 359419966 gdh Nitrogen Ammonification NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 9860.2940 8687.7694 8743.1111 10950.6165 9238.4473 5642.7126 3264.1204 11873.8849 9588.9049 6253.6806 155884.0164 8335.7638 10410.8878 17364.4454 3874.9089 3874.9089 7556.5417 14409.8455 11963.3560 10773.6793 10060.5494 19759.9583 8108.4525 4589.6238 12942.7606 5327.3791 19197.0446 7037.4978 13048.8350 5037.3325 8052.6184 12212.0198 5618.9862 15371.7106 147886172 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4886.3401 11555.8447 3779.3629 2272.2678 2996.7713 6698.0683 6911.5619 5481.3093 141682.3489 8367.5711 5195.1068 2932.4936 2932.4936 5293.0214 11375.5878 5672.1893 12307.8759 9114.2540 9125.7954 3730.1185 7088.7195 11594.5218 3652.1902 17710.9254 11118.7461 11933.6496 2419.8039 5462.5666 6146.7003 3313.8109 11183.8312 197715961 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 115373.7629 32416.5545 24478.4974 33193.1390 11661.7875 74056.3843 33173.0107 62248.2664 76029.5363 48261.8714 46395.9956 1605497.8446 76981.5347 201907.9668 88952.9860 58733.0553 58733.0553 16833.4221 129389.2521 31486.0342 98112.8578 108732.6910 42826.7863 37271.3898 27752.7412 38971.2791 48149.0539 78772.5137 37746.5031 41636.0884 39239.2874 45020.0298 49005.2274 71606.2559 36474.4031 323501686 amyA Carbon Cycling Carbon degradation Starch Clostridium symbiosum WAL-14673 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 8115.0888 8366.5837 6309.6802 14306.5363 3360.2242 4447.4417 5896.8249 5270.0478 5260.6356 337761.3096 7022.5475 19125.2322 6414.8940 6861.8546 6861.8546 4063.9700 15053.4352 10221.2096 15605.9414 10683.6785 8226.0477 5120.6749 6888.3932 10851.0320 10247.6881 21835.9169 6640.1818 12873.2070 4005.9809 7597.4786 7374.0117 4129.9335 7350.4554 380766219 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 1083379.0728 1197845.2693 676976.6776 1641963.3862 2297140.1729 896697.8515 645599.8967 699474.6976 680018.1891 647461.5790 540446.7443 364336.4010 16194086.0812 700146.6598 893472.0439 1990740.0952 649227.9761 649227.9761 461904.7313 727725.1518 431979.9712 1035878.4934 770863.3130 1226450.7457 363149.5889 395947.4529 760967.3301 310451.2851 1213573.7592 802643.9568 777918.4281 422776.5298 364459.3143 415549.0098 403106.2364 1331130.1461 226363706 pcpe Organic Remediation Herbicides related compound NA Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 7782.0542 10185.8618 21124.6795 14345.8587 2434.1971 2560.5960 3669.4281 7817.9432 2514.2207 86667.7298 6358.4253 6351.1627 4695.8504 3034.9497 3034.9497 3435.0334 11753.5379 8461.8526 3792.3579 5833.5830 2095.2511 3053.7437 12781.0109 2924.1012 27428.0731 11100.4602 9410.2601 3163.7507 8195.8355 6890.6203 4770.6521 341591649 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Veillonella sp. oral taxon 780 str. F0422 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 780; 9136.0178 5943.7986 18382.1596 3650.8770 4806.0025 8203.6803 2737.9058 2737.9058 6490.2309 5136.9816 24426.4797 18629.9326 12672.7451 6995.1123 3048.3172 3691.5242 11838.5609 3248.2338 5835.0280 167594239 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 12016.5987 31328.6977 8404.0669 6710.8253 8414.6421 10172.3146 5006.6099 7289.1932 11916.6585 5748.9582 137435.9897 12610.4909 13459.7071 18346.6739 4080.5026 4080.5026 6486.5116 16997.8414 27198.3735 19899.4069 11838.5736 12288.7304 5868.5948 5223.4943 14940.5579 5090.6347 23782.6231 14776.3600 14388.5311 6834.5391 7987.6473 9337.4338 6650.5525 14291.6521 338820232 b_lactamase Virulence Antibiotic resistance Degradation Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7264.8315 12743.0328 5578.9118 5082.4397 5789.0996 7349.4657 5557.4645 8320.7440 7099.3981 5312.8984 172823.6092 8931.7329 6756.8030 4547.2175 3390.2187 3390.2187 4981.7014 13823.8984 8557.0037 7151.8927 12752.4862 10721.3261 4949.5806 4997.2641 12175.1875 4606.5827 18543.0429 8295.3535 12284.7272 5406.2612 7145.1039 7808.5740 5013.6959 15774.9681 315312982 narg Nitrogen Denitrification NA Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 26012.1779 28609.6266 19213.6479 7603.5977 12473.4753 9822.8424 17051.1564 7656.3923 14454.6121 19367.5679 42112.6174 400583.3826 12758.5492 27330.0458 25312.1563 22705.0977 22705.0977 15327.2973 28594.2749 22288.2006 28206.7372 31487.9361 24153.2528 12046.9882 20823.8983 33023.5235 17259.6636 40344.1062 24923.5384 38222.6081 19001.1888 14718.6726 25447.6583 11315.7867 33451.4961 241110574 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 50308.1029 7198.2105 10278.1322 4780.2494 4495.1249 39148.9043 22633.4862 22436.6847 47861.6458 14872.6255 183601.0565 8038.7511 11166.3166 14787.6723 28659.0273 28659.0273 8721.4995 33566.0375 10266.1993 11813.0177 21989.1935 720870.7855 15091.5341 47532.7313 10983.4530 41614.0798 38011.6923 104867.7613 18572.7663 60650.7231 12521.9867 15384.1825 15596.7956 34648.9564 385277748 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8127.5994 25217.9217 6980.2457 12399.2103 9133.6433 8107.7843 186159.6686 5905.1100 12294.2248 9456.5182 7758.4286 285420.8990 11156.1759 8554.4199 19919.5687 4768.4287 4768.4287 7789.3543 37515.9477 14391.6280 9547.8350 10163.9733 29250.0992 6772.2763 5913.6007 40054.9055 177683.8136 22601.8662 16636.2919 18674.5642 7471.8833 8724.9224 9193.7942 6503.8682 11279.2111 256362530 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 40384.2168 9314.2863 14622.7750 9204.0395 7160.4005 22755.6809 75753.7818 11977.9339 29111.7287 29894.4802 135128.1457 11887.5731 18593.7287 17688.3350 15102.5491 15102.5491 7894.9153 35539.8022 12405.0286 51925.5853 17142.0760 102842.5527 9765.2248 14331.6516 20463.6626 10968.8727 52414.7960 19796.8186 21404.7261 13630.9274 20831.4173 19412.8713 11477.2937 21948.2156 356690697 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 348003.7492 83076.2250 111362.7507 1347192.7990 135681.5627 495336.5834 326688.9007 378664.6487 139186.8782 207688.1587 143380.3301 111936.7646 2796699.4108 147871.2361 234373.2236 227961.9791 167698.1378 167698.1378 64458.1837 203759.5138 102080.5041 114450.8628 121620.5718 126695.6296 66399.3558 121377.4093 143428.9195 83893.6886 360891.9263 164031.2917 179397.9726 103524.1449 104924.5704 129152.0986 70284.9517 148536.2179 291455614 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium breve DSM 20213 = JCM 1192 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 86437.7017 4983.3607 24068.5392 6698.5187 4262.3186 9596.8230 13580.6996 7926.4450 16502.7086 9789.8486 219237.0898 8254.5440 106657.4887 42293.8521 7406.7731 7406.7731 10042.1819 13570.9916 10356.4073 14486.5867 8211.3812 7019.2103 7983.4250 30398.7070 7001.0177 19875.4319 16833.8528 24896.5769 6975.2699 9004.8753 25303.5117 61364.3526 6607.2017 359775684 urec Nitrogen Ammonification NA Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 3905.4687 9296.5945 1982.8344 1982.8344 3224.2137 3879.9751 4305.7894 11931.0074 2875.9496 7219.4768 6517.1421 27511.2964 2677.1852 2821.7736 167574798 endoglucanase Carbon Cycling Carbon degradation Cellulose Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 5072.1768 22400.3299 7079.0450 17209.0595 7941.7731 3091.4887 174399.1315 6939.1789 7167.7357 19592.8093 6930.9382 113511.9612 7786.4812 7074.0671 16975.0872 10942.9016 10942.9016 13785.9567 12483.5315 12375.0510 7682.7705 5803.9618 4518.9544 3904.3933 104644.7957 171813.1051 17355.9273 9946.9886 12697.1655 3562.3309 4514.5787 4104.5602 6955.9146 5516.1825 206679577 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 53556.6131 9310.7218 28417.6930 29734.6594 9297.2933 64047.9975 11735.5447 266179.1696 15289.4014 148331.1273 29979.9364 279650.2478 19578.4791 19241.6056 18112.2398 29500.7418 29500.7418 16819.2292 32365.4356 18467.4441 36312.2390 36350.7334 232674.5310 13566.8854 15063.4074 51464.7803 15334.0635 55130.3326 32225.6760 34661.4748 14197.4704 17851.2851 85518.3361 35765.6278 35256.9600 302658226 glucoamylase Carbon Cycling Carbon degradation Starch Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 7338.4540 35502.4407 68039.7173 17995.5833 9870.9466 3537.7231 2844.0079 2822.6747 6627.6361 65899.6946 11326.1717 184117.7616 5697.8345 7010.9840 7615.1250 6395.4024 6395.4024 6477.7625 11963.8078 19970.0317 16913.9691 4171.4439 9739.0607 10416.6773 17828.4189 8288.1874 8958.3228 11355.5501 90104691 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 188984.9878 11953.7309 27938.1449 45040.9935 20241.5857 29553.6166 37090.0234 21221.0989 46399.9433 35343.5905 65913.0826 464090.9360 30364.6415 87607.7540 41378.7442 24113.1261 24113.1261 17468.5252 67766.6397 50182.4544 39337.5574 505242.6383 37209.0986 33876.9067 26209.0276 44172.1103 18968.6795 108348.6966 56340.6430 56482.3130 23196.7430 29752.8875 140774.2426 22970.0990 40852.1221 158322196 TIM Carbon Cycling Carbon fixation Calvin cycle Agrobacterium rhizogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 14156.4246 178662.8345 43663.7721 77238.8526 9265.1088 3772.2712 15966.5609 4253.1314 401801.4535 20200.7813 26963.8917 22179.0732 16747.7359 16747.7359 9298.6589 35222.9642 32569.1363 35665.8324 12374.0713 19960.1467 8382.8065 21402.6765 31301.6150 8451.7082 8799.3579 260223621 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14418.8237 161909.0401 7430.7780 17745.3891 41211.5520 4028.7962 4135.7470 7581.5872 12474.9815 23933.0722 104119.3639 7308.6533 11012.6403 6237.8552 4056.8761 4056.8761 4240.5473 13208.3706 33970.2140 12825.0670 9641.3838 8148.5765 4229.0401 7874.3369 4472.8649 17369.9849 10127.0255 14381.8668 4457.4586 6781.7317 14009.9877 6775.8213 6160.8956 375259768 pme Carbon Cycling Carbon degradation Pectin Klebsiella oxytoca KCTC 1686 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 43847.4673 10022.2718 41397.9211 63922.9934 36438.5094 35268.1780 30844.2090 6777.5578 30251.6298 246332.6120 29690.8360 905164.5074 37319.9614 43219.8267 71105.2452 37420.0843 37420.0843 18081.2084 67302.8275 41097.0722 28425.6009 141508.1512 1207686.7980 19359.9331 35775.1596 61074.4704 23628.2910 263701.5883 63180.3726 61343.8012 47829.6814 35139.4283 22561.6165 14965.1590 19796.0282 39936617 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 66498.9530 90426.0502 32340.1852 50104.9854 41539.1704 11207.7019 50750.5462 103552.4387 64962.8330 161390.0809 231124.2063 68089.7912 4618873.2128 63014.3901 98172.0232 82509.2946 50422.5603 50422.5603 44339.8914 105560.6692 56286.9463 58428.6672 71485.6240 627264.0744 34815.4284 67207.4641 58738.4059 42803.9309 285313.0931 98056.9667 98845.5941 35289.6981 72595.7043 62986.1703 71628.6824 168316.9563 220971138 actin_Stramenopiles Other Phylogenetic NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 24889.1217 12330.3528 2259688.1933 19375.2590 23432.5764 9523.8141 26746.3894 16051.2406 9414.1295 17694.8186 20080.6013 20993.9939 370198.7609 21481.6550 27552.6253 26253.1383 18064.0236 18064.0236 15425.1364 43804.1415 43606.8913 147259.8075 24953.1232 33438.6000 20223.0713 12518.9170 24204.6230 10408.9940 47042.8953 45876.4283 35578.9352 34748.7834 20300.2071 18258.4123 12888.1808 39834.0017 283781056 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 207305.9210 110933.9608 73602.7534 23827.6521 18409.7002 65580.8126 278778.7499 92338.8511 58035.6647 118763.1401 70750.8216 979598.8206 134485.5697 74636.4727 69811.4589 123011.2194 123011.2194 44895.8890 162858.0803 125982.8253 92321.1657 169498.0450 100923.5183 59400.8393 43385.5326 75943.1802 61298.7479 345669.4881 83015.5929 69452.1127 91123.2424 86242.5629 84460.4988 77673.3677 118054.7256 86357581 cysI Sulfur Other NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 53270.0668 27674.7641 38126.6029 10756.1391 6602.9408 12428.7671 54511.7857 9073.7793 118329.2505 104148.6317 68623.5549 9495966.9538 25787.2908 46473.7946 18583.1172 22478.9401 22478.9401 146178.2460 84502.4402 26700.2853 31565.9229 119971.7034 29284.7666 22341.3115 26651.4985 30018.0928 15917.9907 72526.0058 31984.1585 41267.4859 13654.3209 24983.3963 30913.6512 132602.1607 83890.6376 332708469 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya majuscula 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 145630.3613 153823.9474 159756.6357 66791.8897 24089.5896 373040.8444 210713.6331 51159.2298 90631.0050 188511.9389 132129.6585 85002.1874 95070.9388 97329.4800 196473.4138 200257.8169 200257.8169 162455.4824 195793.9255 60278.8952 191363.4187 257250.4754 96822.2344 61261.4089 98930.9855 79457.3374 135524.9635 380209.1144 151871.0578 247682.1530 200011.3953 137056.1244 140792.2587 82373.7967 255016.2935 255293246 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 109321.8276 5363.3869 15941.0398 12183.8747 3349.1124 4718.7069 11789.2816 32309.7404 12268.8840 172013.8874 12089.9585 27969.1314 19888.8441 2687.5016 2687.5016 18715.1854 12029.1994 7489.8624 16751.9534 12488.3489 5405.3660 3653.5159 4821.3295 11959.7893 5106.2018 14196.1873 9931.1411 8880.2184 5866.5766 23206.5395 7383.7091 4631.6888 10786.2384 193223383 arylest Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 16812.1663 10702.1094 8994.9546 19075.9290 9715.0089 9940.7771 32191.6221 19341.3997 17955.7376 19076.3041 18116.7739 873736.3144 23120.0452 28507.6755 20976.0966 12136.7932 12136.7932 11665.7165 30758.0792 23219.7274 20785.8538 19195.2216 18571.0542 13935.5001 10442.0241 26540.8665 14343.5474 57996.2279 17665.7936 24878.4355 14113.4971 13463.0749 29737.1784 11927.6085 31996.5212 295978699 B_lactamase_A Virulence Antibiotic resistance Degradation Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 7119.1928 48572.8585 44818.6532 2046.7056 2046.7056 7507.3668 5123.5954 22555.8763 3423.9412 2891.6582 6824.0680 329935878 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 53002.9967 8367.5962 16709.1838 57625.1736 5092.5263 5577.7621 23016.8359 9973.6492 180242.2827 12075.3748 10103.3412 16350.6387 13555.5199 13555.5199 127294.7616 16450.1080 11781.9721 61777.2902 17817.7711 10432.4655 9232.0133 5804.0088 13009.9182 6793.3987 26016.5648 62550.7552 13843.7731 4334.4039 18573.2554 16548.9798 35420.0143 12738.6792 125656332 cutinase Carbon Cycling Carbon degradation Cutin Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 10017.5570 9456.3015 5399.1141 10362.8012 5003.3275 10720.5921 7078.0994 3324.3657 9295.9270 14271.0817 3501.6409 251518.7216 10999.5944 11265.8563 4619.7774 5484.0808 5484.0808 6505.3579 18130.6247 8447.9411 12315.5763 10080.6557 13538.2358 5022.9296 5365.4749 12818.7145 6044.1139 15821.2379 4345.9717 11516.8594 7113.6198 7549.4650 6029.7509 6383.8482 12547.4629 261419946 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5545.9485 529863.9561 16312.6581 14766.6612 5139.5856 2030.7206 4836.3103 1944.5727 1944.5727 4661.6145 20739.8377 4485.6152 5093.3428 3291.8270 8573.1274 11451.0278 4751.8099 8299.6994 4338.1068 4881.0919 5927.5648 3112.8742 115607457 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 40507.5863 19882.9093 16627.9504 24020.4730 8757.5254 18909.0905 45431.0780 10560.5335 27867.0174 24941.2361 10568.6069 462329.0058 21512.1354 33268.5573 11250.1074 16019.7950 16019.7950 15395.6379 26225.9381 24386.0566 18603.8710 96021.2074 41613.4693 11720.1777 18456.2528 25806.3897 14216.8641 40185.9260 25610.3189 86435.8242 14560.8118 23724.5035 9752.6367 12579.7328 33954.6511 332710461 FBPase Carbon Cycling Carbon fixation Calvin cycle Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 13691.7948 145182.7443 42746.5526 29512.6896 9810.4388 15315.1759 43488.0139 21856.4095 23835.1361 17332.8501 10474.7603 416559.7940 26112.4513 23974.5975 15930.7042 14075.3340 14075.3340 12280.7119 33973.5410 32567.6043 789837.3495 43205.6479 24308.2653 192697.0242 11869.7153 21376.8719 163047.3990 98751.9282 9970.9583 22905.5028 98337.5748 17928.3534 21184.4738 11635.3509 140968.0481 336293620 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium acetobutylicum DSM 1731 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 8548.0470 6867.8560 5016.5981 8906.5586 7362.0236 9234.4342 3945.9718 3638.8473 17352.6679 11162.7337 9252.0555 161523.9938 31325.1588 22621.4022 50880.6460 21347.4370 21347.4370 7078.0961 14120.6054 10496.9353 10473.4337 10401.2745 12309.7500 5062.1550 6225.4821 12680.0234 4794.2812 25445.6164 8473.8875 16855.9023 5228.7903 7596.6052 7036.7381 6443.7589 14441.2837 296092765 terc Metal Homeostasis Tellurium Detoxification Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 8588.7554 5317.5182 9911.2271 9536.7025 4267.1401 4242.3298 5741.2331 25416.6113 3330.3613 6110.6492 6384.7198 114431.6466 10206.9743 4824.2198 5457.3999 4556.6212 4556.6212 2792.0760 7017.5936 6043.4474 12503.9431 4260.7108 3222.6182 3863.0373 6232.4188 3794.2881 47977.5356 6078.0505 6092.7033 4476.8817 4249.7649 7365.0197 10787.0403 7418.1447 306517127 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 158214.7908 36053.6049 16861.2578 69389.5838 5301.5160 2141.0247 2141.0247 6806.8111 4048.0913 3579.7306 7198.8538 5914.9840 7497.6051 2620.8839 3811.0116 3609.7532 347365009 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5510.2009 3958.5318 6446.1228 4635.0530 6032.2158 7122.5666 40909.2178 2749.5849 2724.3760 71082703 phta Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus coprophilus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 66730.2886 44516.3057 267633.8471 313837.8499 8194.6413 15490.5928 10329.7632 6569.1387 25749.2808 23329.2135 36879.1850 1010299.9853 28883.7250 31763.6215 33982.9663 40134.1353 40134.1353 34143.2811 65014.8871 20403.4178 23342.4101 49605.4504 51967.6607 131397.5428 18991.2099 23846.5534 15866.7101 46004.3843 27162.2763 33830.1394 15263.1844 28396.8943 22942.1144 16413.3396 37997.5381 157371755 arsc Metal Homeostasis Arsenic Detoxification Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7096.9856 10267.0030 3156.8664 6658.2393 8217.0642 18378.8278 3371.3460 84522.7714 16070.0028 6827.5476 4930.4280 2963.2570 2963.2570 7925.8228 5863.0209 6716.9791 5659.5746 4198.4034 7314.8512 8135.9050 8039.7887 3535.3747 9960.8188 6687.9892 10961.7111 5123.9726 8848.4200 4549.3788 3373.3575 6059.3392 150397851 pgk Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 9739.6935 9215.9734 5971.4997 90186.0273 4270.3311 4244.4610 7194.1137 3807.6799 3807.6799 3319.3467 11697.3118 5924.5027 5275.9390 5059.8784 3628.1005 5915.9384 6245.0748 2578.7093 3153.3507 4817.3626 2320.4516 7630.5983 377574926 amyA Carbon Cycling Carbon degradation Starch Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 27275.5041 18859.7220 20137.0522 23071.9274 11152.7322 18519.8189 18794.1306 16299.7188 28650.4335 19733.5776 24222.0160 366673.1548 26547.5190 19672.7279 20273.3596 39571.2232 39571.2232 10566.9847 47355.4665 16099.8177 57983.3746 29872.5235 19314.3828 16072.8412 23565.1107 32437.3981 19413.0803 60564.2015 15585.9495 32469.4145 28766.0991 38157.5739 34348.2373 17118.4358 40174.9969 166367532 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 19981.6833 6158.0086 12949.4126 11433.9694 36246.6978 1977.5156 9879.0997 7720.6382 5557.1476 96508.6425 9791.4798 7540.1906 4596.9710 9633.0162 9633.0162 5310.2149 14416.2211 9403.9221 5647.0822 9861.9222 8333.5628 7274.8716 8093.1914 9890.4314 4702.2399 12916.9897 5249.1671 8884.9850 16293.5741 5354.5405 11092.7290 10057.3916 15653.3138 385883012 vgb Virulence Antibiotic resistance Degradation Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 13072.6228 8380.6254 7463.3954 14644.8050 9833.8284 5294.2591 10229.0483 10929.2490 15070.1087 573611.2863 8567.0488 10839.0364 36245.4420 12356.3091 12356.3091 5588.2129 21815.7995 14548.9812 9593.7493 9296.3991 15244.4944 15621.3972 11803.4225 18035.9781 9212.5141 26284.1128 10555.0185 17622.4054 7483.1209 33792.8915 11763.3325 6926.6573 15370.7618 374104822 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 100528.9222 15848.8396 42049.1427 18032.8729 28132.3693 8235.3319 19282.6653 25123.3878 11774.8366 21853.0098 36018.2584 21426.0392 597200.6377 41106.5950 25912.6258 20237.2229 29124.9544 29124.9544 16708.1033 46918.7849 18222.2143 74873.5561 76170.0183 60047.3922 30383.7498 29656.0085 34233.1374 19880.7400 78018.9751 33586.7779 54661.4622 13986.4018 26762.6744 86678.6073 17592.5846 26566.5210 78358305 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 4012.0328 4020.6934 2657.5458 3755.8834 3989.2396 4025.8759 16751.5796 3345.7473 118951.4684 10153.6700 3886.7879 3886.7879 5199.0598 6645.9416 3422.8689 20532.9014 2302.3228 2559.3324 5727.3540 2303.1921 12376.1138 9091.5583 2229.9507 4652.4554 3311.9034 2868.7684 5120.4675 290568549 dmdA Sulfur DMSP degradation NA Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 99532.3650 8529.5673 11828.5927 12215.9497 17492.8933 5443.8298 44937.6770 88701.9476 18123.3526 17474.8456 11756.9193 3058.0583 11180.1134 10148.2153 9624.1921 22840.0291 22840.0291 6408.7696 28003.4439 9344.1990 31011.1256 28042.8918 21467.9943 13331.7939 19195.0307 50734.6779 7097.8054 41548.8806 59100.9212 36657.8197 9270.4743 11853.7245 16015.2947 16543.1247 12030.5836 383462070 linb Organic Remediation Pesticides related compound NA Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 43614.9624 10220.5017 15590.1150 13922.2367 6538.0654 63207.0216 16007.6967 9679.3552 12876.1077 15249.0504 16387.9518 288283.1846 18950.7893 24401.0292 11464.9028 9224.0218 9224.0218 8779.2359 20914.6313 20178.5238 37114.3853 20586.1023 134481.6199 10469.2309 9715.7153 20958.1357 14230.6702 54438.8174 13586.6906 112296.0557 18438.1389 23363.0900 15614.7440 12677.7720 23988.3488 159466070 mg_chelatase Secondary metabolism Pigments Chlorophyll Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 500187.5506 660154.4069 284341.4275 65936.5319 792606.3348 51106.2202 348015.9080 497924.4483 188462.1199 293857.8924 271190.0704 243481.8025 4633694.2082 207588.4796 276179.4070 619449.1468 482228.4267 482228.4267 239122.0980 677807.2270 227843.9072 241167.9762 370078.7638 296910.3209 424780.4389 347744.6397 445016.4090 314985.8097 1151057.5891 398471.6910 304468.1120 344811.9981 221552.7712 315372.8787 289199.2328 453951.8337 328937901 pcpb Organic Remediation Herbicides related compound NA Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5041.8589 3152.6095 2185.4057 3876.1860 4360.0446 136522.8742 4885.3509 4818.2295 4043.1927 2504.9312 2504.9312 3418.8100 9033.5600 6492.5147 3999.3125 5206.7291 10237.9681 2990.5350 2761.5047 6749.5275 2282.3650 4115.6973 4365.3745 6862.6512 2686.9227 2823.7063 5265.4698 2357.7877 14097.3425 289208524 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 26927.6435 12643.1513 22364.7135 30580.2973 9326.8559 11598.8811 9504.9179 13818.5496 34315.2589 26016.1076 438600.2911 22405.5938 21626.1520 18098.2617 24030.1983 24030.1983 14921.2011 55260.9946 18569.1109 37244.1515 80102.7736 17199.6370 57382.0049 11206.4690 39169.9226 13731.2696 38678.4059 44572.5530 22281.6793 11125.5759 19624.9268 19002.0298 14136.8468 32460.1687 342832578 amyA Carbon Cycling Carbon degradation Starch Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 10443.6307 9173.9908 19205.1190 4818.7736 6128.5718 2536.2607 7126.6758 8016.2860 2429.9182 151616.6623 6011.4331 7800.6666 5948.5548 2856.3282 2856.3282 6022.8416 13797.9768 10884.1873 10110.7687 11138.3040 9609.7761 4806.3747 5610.8089 16462.8942 3738.2874 17024.1253 13471.2695 13604.9936 5666.3040 5493.9752 5525.6174 4624.5535 9946.3453 27355563 atzd Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9404.3814 8419.2887 11252.5376 90468.9648 34496.7426 9940.5393 5121.7660 7532.6382 6435.4013 24392.8395 6899.3995 6899.3995 32199.8410 85257.8588 9926.3721 5603.9236 3614.1569 8001.4642 14673.6297 8010.2291 9784.0661 3352.4208 4906.9466 7146.3763 5287.9456 297549429 amyA Carbon Cycling Carbon degradation Starch Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 7270.6451 6816.8617 20531.9775 4526.2572 5332.0815 3082.7800 106795.5079 4853.5652 4375.7061 6462.4574 8098.8059 4130.4817 4778.0997 5906.5034 3620.3966 3730.5796 2411.9467 8142.7967 7859.4193 9137.3331 2747.0516 5237.9072 7291.9755 3270.0273 11234.8294 338232923 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 5012.3723 6957.8461 10987.4805 105534.0236 2340.2177 14900.7045 12825.6497 5472.9167 7924.8166 267562.7359 15222.8710 15710.3649 30762.3128 19874.7161 19874.7161 3356.3375 16729.7064 9035.2894 13104.2507 6346.6561 8752.1109 3902.7114 7105.2855 11738.3276 12601.8013 10460.0382 7316.4326 19851.6811 5625.4508 7159.1955 6116.0392 2113.0593 8625.8954 170740324 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 19078.6948 13070.1392 33367.4424 10720.9510 13749.3644 32207.4021 26757.1947 8688.3802 8393.0313 23108.5922 306163.6241 17637.0044 17815.9957 46695.8707 18160.2067 18160.2067 7168.8678 37164.5864 12338.9965 12833.2935 32363.6193 13672.2699 53916.6038 15062.4979 23179.2131 24847.4348 48646.8339 37885.8169 79368.9735 12123.1943 19194.1764 38245.9422 14143.6256 25876.7535 1685019 cumc Organic Remediation Aromatics Other aromatics Pseudomonas sp. JR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 35920.6585 20756.0896 34097.0968 47490.8930 8208.6664 35221.8965 38324.9005 19030.4252 37080.6511 37122.6348 11473.5515 591169.3991 31885.4725 33915.9318 23821.3102 16686.1342 16686.1342 21511.2598 67655.4138 40061.3653 84620.9271 55669.1466 64045.1346 18488.4428 28295.6622 83773.0809 22430.3577 91158.2473 34427.1600 46542.0979 24161.4812 25063.5636 22180.3843 22298.1649 53065.4986 26278888 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 102242.0446 43106.6983 14690.6917 7763.9946 18227.9441 7715.2439 10728.9080 10683.6303 10022.9312 10733.0250 227692.7599 17869.0849 11802.5160 11507.7169 9360.0663 9360.0663 9539.9272 15773.1431 6499.6326 10681.7044 17609.0212 9511.7029 24151.4622 7990.7680 15653.6263 6084.0935 27706.4638 6324.2633 18584.1165 7641.6965 13116.8180 10641.9547 5770.1014 10554.8026 224027838 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 13680.8080 7429.5446 6354.0690 44344.4055 126142.5467 7530.6863 83127.5662 13296.9424 20858.0765 15989.7817 96630.8974 236228.9997 14266.2385 31431.6762 13324.5021 6983.5103 6983.5103 10276.4024 40266.1573 16529.0948 17515.6636 26144.4207 20381.6371 5712.7066 15655.9820 15391.7380 12033.6200 266383.3158 14678.7404 21073.3253 10396.2557 11664.8240 19142.6036 8888.5399 26015.0873 2773302 xylanase Carbon Cycling Carbon degradation Hemicellulose Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 6350.0289 9649.6104 8302.2027 10285.1506 13784.4456 6421.2434 9402.9037 6718.1912 17651.6013 10989.2604 9057.8426 110200.4768 7419.7016 8679.7005 21963.0517 7655.1760 7655.1760 3010.1722 18350.2943 8106.3512 7216.8092 5898.4888 5250.0363 2624.6758 8480.5462 13126.1486 11001.4899 12899.4899 15272.3445 36493.8524 5841.9420 5533.6164 9504.0776 7627.0400 7944.0300 296426465 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6385.4842 9185.8958 3989.5010 6013.1477 12087.9005 8461.5214 17348.6266 20879.5674 61112.4534 4505.5222 7660.4512 18051.3148 15105.9533 15105.9533 5768.1375 10962.1711 52457.6977 7302.2619 16087.8823 14684.6241 12453.1787 17058.4362 6787.8704 13380.2929 33955.0263 10812.8546 13262.7774 10649.7538 17243.8700 8822.4928 5262.5977 16904.1949 296023164 ara Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 42752.5859 6428.6261 4476.0063 7873.5470 3647.2167 4348.4307 24325.3808 24325.3808 3522.3705 5684.1542 380471.7405 12584.5687 5254.0435 4196.5189 24666.2260 2126.2397 6316.3263 5654.9150 170748962 mer Metal Homeostasis Mercury Detoxification Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 433872.2109 15343.9219 20686.2031 36788.5053 11385.4031 27819.5591 22319.8835 43759.0438 57025.1559 42792.3957 41068.6180 820973.8783 39346.2468 35482.1162 52206.0048 42624.8887 42624.8887 30860.4216 238902.1922 58698.4464 182172.4654 194468.4979 18793.2200 14610.7646 36432.3491 57306.7378 45937.2194 209599.8688 112264.8840 67044.4165 23701.8821 37414.2223 41717.6356 36824.2918 47184.6043 169793646 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 18144.2806 53751.1428 6717.5493 4964.3785 7934.3175 6603.4140 10985.1692 6548.0194 191219.4499 12978.0998 7812.4841 4997.3345 4692.0355 4692.0355 4692.5928 15374.3746 7828.7623 13083.8082 9787.5648 6166.4138 7414.6448 4921.7916 10543.6124 5630.1812 21721.5122 8203.8032 10295.4525 11019.5985 9309.0430 21363.4234 5872.6360 9486.5250 115370210 endochitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 21524.7640 15875.8825 14557.6906 32813.7735 19258.5728 7723.0711 18372.3476 7206.8371 18394.6423 13089.2398 15742.0973 445922.5246 26248.1003 14816.6323 22822.4893 27701.1565 27701.1565 16942.9534 41687.8682 22900.5802 25704.2386 66367.5103 12972.2382 10746.0504 13967.2844 25397.2733 7538.9586 69055.9535 22009.1595 24050.9101 8193.5596 14041.1749 26212.3047 13276.7141 18024.8123 383778859 glucoamylase Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 9062.6839 4925.8965 42191.2647 3446.3035 3446.3035 3224.1839 39654.0968 4176.0423 5588.9129 11396.0898 34061.7260 9708.8843 13114.9945 15957.6134 4593.3861 5114.4846 2719.7070 4528.9063 3846.5145 13207.3343 9270.3223 194308688 b_lactamase Virulence Antibiotic resistance Degradation Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 5042.4622 18350.8744 3954.3566 3368.2910 4169.1688 6181.5816 6572.3161 56204.3758 4382.3995 2663.1841 2663.1841 8594.6912 4503.1071 4577.4531 4744.7691 2354.8714 3542.4477 24794.7419 2417.0670 6122.8307 1638.8205 4209.6908 31610.4945 2026.5930 4682.5952 256359684 ara Carbon Cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 136711.1372 51018.9880 27396.1689 54227.1544 4517.3011 41543.7467 56491.2937 31933.9422 33583.4144 88261.4758 57512.9926 2095141.9964 39545.3680 72575.3207 48291.3326 45251.8987 45251.8987 52716.4027 69517.3783 61730.3082 60988.7609 121475.2780 70064.5078 33290.5189 57618.3803 58320.6565 105657.4377 105897.0831 76510.7801 85012.3240 36147.7775 47297.7695 42997.9330 39508.6880 60595.2895 323095080 amyA Carbon Cycling Carbon degradation Starch Prevotella oralis ATCC 33269 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oralis; 223616.5346 139586.4502 233180.6417 424396.3299 221578.1663 179339.7434 487648.9366 208707.8895 205707.8370 215896.4573 180648.0465 4689219.5924 288998.8997 267950.3322 503002.9222 305610.9345 305610.9345 145985.9889 250709.2246 219595.1582 364557.6373 271119.5260 322099.6847 140456.6144 134432.1354 214772.6074 99606.3568 355112.8439 249319.0618 271336.6530 185246.5516 162185.6147 178695.7709 129049.7105 303722.8798 63256204 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 255688.5085 327652.7599 148615.2110 71604.0911 19346.5809 28951.7462 59516.1258 27812.9655 55348.0729 59821.3339 60843.7018 617589.0080 130980.4484 54986.5096 59954.6014 60906.5707 60906.5707 72282.6818 94117.7603 84801.0074 162927.7554 82345.9486 34031.1217 75728.7078 51084.7367 62767.3679 50533.0250 104212.9309 67534.6458 198991.0885 32387.8047 47991.4455 113569.2993 33330.8185 93256.7184 374334566 Sir Sulfur sulfite reduction NA Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 7317.7496 43774.6162 4092.3323 3452.8682 5019.2743 8608.1382 4357.3714 101579.6966 5688.9504 5221.7617 5951.2969 2719.8064 2719.8064 3887.2142 14982.0044 14343.7499 6512.4037 10441.0176 6591.4290 7750.7608 4752.4099 13879.5292 7927.7911 23800.0531 13264.3529 12527.9182 4961.6320 3668.8750 5776.3902 4727.0301 6160.4229 112462995 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7613.1264 3485.3417 15883.5586 10134.1073 4484.1935 103624.6916 9246.5592 5148.5592 4088.6381 7059.8127 5780.4469 6394.1383 8821.3102 2433.0771 7205.7178 4454.6219 2629.2755 3311.7450 4022.6367 2846.0590 160361072 chrr Metal Homeostasis Chromium Detoxification Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 271905.7061 52857.1203 193352.6754 283249.0427 109857.9494 212067.0853 577905.8406 219931.6021 214173.8552 232545.3267 227953.7755 179764.5082 5077940.0327 163549.9283 216660.2397 665793.2111 199148.6095 199148.6095 140676.8032 195499.1142 112019.9763 181335.0875 189867.4229 162752.0047 95690.5213 133878.4144 219013.1760 124321.1710 335287.8774 163503.8501 268997.8760 98778.9628 124592.4637 142490.5281 143123.8609 176085.6935 74421747 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 6108.2314 164886.8508 30016.7526 3004.0923 5254.4408 11110.4021 3594.7437 7643.7764 3733.4283 2864.3388 2864.3388 3719.7384 10285.8927 4964.1933 4017.2713 9582.7853 4391.2843 3132.5960 8506.9237 6981.2187 9116.9563 7218.6675 17607.7799 3761.7145 5600.3378 3543.6972 187481862 pula Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 5747.5065 5640.9576 5479.9291 4065.5958 5581.3762 4671.2947 5773.7550 3756.4345 157596.9434 6243.7933 8420.7961 5377.9862 3383.5912 3383.5912 5635.4195 9040.5604 6900.8820 8311.6045 7519.7051 9236.8451 3995.6574 4097.0101 7777.9504 4045.2160 13219.9091 5077.2079 9859.4102 2604.9943 5158.9855 6105.9157 3488.1279 10434.6684 226424960 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9976.3175 6178.8553 5257.8723 9524.7025 4256.4092 6875.5934 2697.8803 46901.9548 11137.2830 4939.5248 139828.3883 18004.1027 8307.9911 13423.9989 6853.1455 6853.1455 4582.5789 16857.4795 6688.5702 8200.7705 13977.5773 6342.4188 8998.9297 4540.8884 9850.1298 4981.4683 21398.1868 8081.2711 13232.0882 4543.9028 6588.3617 7256.0026 3274.2382 8423.4008 347361278 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7008.2896 5931.6329 8120.9381 6652.4003 6059.2233 2490.6173 5567.9901 4418.4754 3860.1143 674016.7212 7602.8367 7907.1948 4327.9250 2241.9462 2241.9462 5793.7314 12386.0226 11117.5710 4462.3575 10158.3521 23449.5154 3746.8326 2750.4938 12692.4731 4259.3705 19469.6922 5754.2661 9330.2919 6000.9164 4983.8313 7942.8855 23977.1813 13233.0196 124485383 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 9944.0089 7758.4445 44516.9880 2288.1488 4648.7512 5331.3238 6701.5987 9817.9219 16888.9932 125466.4584 9526.8094 15214.6829 14984.4731 19505.3569 19505.3569 3787.6789 23771.8901 11105.2830 19152.1035 96013.1620 6598.5010 4038.1105 8468.9823 12880.8481 10019.4954 37614.1394 25055.6342 18906.2588 13660.5943 10631.3853 39351.4915 5371.2576 8483.4279 384929017 merb Metal Homeostasis Mercury Detoxification Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6060.8167 13212.8308 14176.8209 4320.1825 5267.8908 5556.4093 21779.4028 5653.0738 9491.5298 133218.2325 180138.1680 8079.5310 13028.4660 11282.8102 35667.3619 35667.3619 4932.6861 25229.8043 11356.9134 14477.2219 13682.7040 5542.4616 4892.4307 10420.1312 34136.4663 5194.2862 581227.3550 14818.9504 20295.1483 13719.5295 10027.9068 11581.5546 3817.9389 7827.4076 297565417 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 6035.8729 1744975.4101 217540.7687 19822.4310 4012.3565 3494.6005 6069.1427 26390.2967 107855.8134 4258.9525 3701.5044 3701.5044 4510.7570 8853.6073 6439.5683 5832.2943 5620.5248 3375.1291 3687.7999 8113.8193 11114.4052 4249.2538 11469.7422 3265.9895 2943.1581 6267.8890 2640.2289 6280.5261 61968001 endochitinase Carbon Cycling Carbon degradation Chitin Lecanicillium lecanii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 8726.9882 12568.3950 6797.7498 8182.0600 4764.3827 5700.9471 12689.4643 14785.2232 202978.9012 7315.9969 13406.9733 13560.2265 13560.2265 4997.9716 26987.2026 8295.6783 7217.8116 12779.9513 6516.6555 6525.9761 7676.9510 8744.2374 9732.2148 24223.2486 11805.0462 15523.2428 7127.4720 10000.6079 28019.6580 7046.5807 8151.1393 358754255 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 58699.4709 26557.5774 47042.9718 84171.9945 691333.4974 32303.3425 64698.4391 70941.0783 54344.0885 224580.6538 55868.7006 47648.9445 4632602.3754 524562.6252 115831.6804 74990.2471 41263.9320 41263.9320 41198.1638 79393.8354 48571.6421 59426.1654 81431.8734 293813.6070 47747.3172 42114.0948 77148.0488 73588.0050 182446.5442 105578.4374 82870.0793 25143.8829 44602.1588 46353.2892 41664.9050 86794.5387 291295582 ppx Phosphorus Polyphosphate degradation NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 17786.7114 14089.6119 13483.3006 21982.1093 20786.1709 21183.2060 12529.3271 17838.0769 11573.5721 25396.0693 24332.1720 13884.0292 593966.4681 31512.1517 29434.2348 27967.5944 19023.9319 19023.9319 18064.5954 32815.1093 33320.4662 20028.5120 25728.8015 22319.2095 10759.4057 10033.1154 23780.4693 11243.0931 37090.7095 22952.4331 25204.7925 7716.2087 30046.2846 14163.6731 8616.9123 28112.3382 374659403 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 5065.6615 6141.1699 8467.4681 4681.9543 6752.5494 5695.4674 12339.9296 80573.1931 5282.0394 10513.4509 4698.8786 4698.8786 5508.5277 10758.0393 23432.5830 7141.3579 12462.1770 2265.5743 6900.1616 3602.3121 20501991 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14470.1195 9632.5531 11055.8327 4968.7456 9729.5821 7677.1787 4532.6194 19337.5470 8324.2051 5087.8897 219348.6418 15208.8347 9716.6483 7528.6802 9374.7130 9374.7130 7454.7520 18442.1135 13133.2698 11393.4077 13806.1626 19098.6687 7641.5008 6915.8055 17217.0956 4925.3378 17080.6255 7175.3078 15163.9222 7574.1247 7309.3861 8356.4346 5751.8551 19651.4969 91693341 bphc Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 78064.6036 11542.0362 10046.9948 21524.6081 9053.0750 9653.4661 19142.3065 8189.3131 8977.5823 16953.4434 25884.1434 1554444.2384 19116.2453 22410.8712 39790.0293 8296.1866 8296.1866 7567.6115 51823.1463 9938.9436 10066.4964 9864.6450 40272.6809 3974.3974 16538.4655 23688.1752 77891.4988 113108.9417 27826.3079 19631.8746 55969.2748 16612.4583 22920.6063 8235.2029 14047.7416 373098742 alkk Organic Remediation Others NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 4955.6765 1851.8940 3970.5895 4600.6999 1709.5523 299070991 cysI Sulfur Other NA Ralstonia solanacearum CFBP2957 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 15206.9744 9446.6894 15078.2232 52024.5117 12163.1727 8805.6664 25420.6156 14827.1568 13955.5009 19481.0993 37159.2452 792962.7235 40065.7489 14760.0571 18571.4253 18406.3202 18406.3202 17822.7366 37324.7387 27575.1584 18936.9908 14142.1691 29458.2936 19925.4617 12647.0163 30387.0206 21519.2650 57232.5960 31266.1915 34115.8672 12437.1902 19068.4082 18143.0110 12260.4038 16442.3092 356477538 glucoamylase Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 22439.0973 10803.1612 8079.3482 4651.4892 3249.7670 16052.1119 5571.4500 6908.4556 6573.8646 109596.0985 7471.5120 15757.1662 5800.4365 3991.0807 3991.0807 4183.0470 14894.1446 6002.0832 6451.1224 9869.8957 10942.4283 5459.5375 4901.2556 11166.6469 6770.5107 12484.9262 5168.6857 8997.7476 2811.0489 16218.9562 6662.7638 20753.1928 8248.2092 329568872 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 7854.0864 10711.2194 10514.1723 5296.3869 7204.5928 67946.7014 3203.9674 6913.3699 8845.5295 20485.8841 131350.4994 21873.7478 6979.4245 10111.8447 7084.9531 7084.9531 5120.2702 16336.3307 10418.0196 8492.3375 10879.7672 8369.7699 26631.9834 5616.3578 11961.8561 4180.0666 41655.7634 9117.3545 10604.0456 4386.4681 8891.0794 6450.0055 6825.5230 12694.5883 161163768 endoglucanase Carbon Cycling Carbon degradation Cellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8242.5835 22260.6851 5881.2876 10569.3217 7106.3092 7502.7281 6083.5964 8299.2475 4781.6154 192403.0415 7009.5482 7153.8290 10188.3061 5118.5456 5118.5456 10625.5644 14994.2648 9734.5060 234274.5894 18102.9864 5968.0641 5112.5822 4726.5398 13157.1491 4868.2823 14794.8573 12165.7344 19148.4877 6023.6881 7401.9152 4977.4520 5675.8459 11456.5563 39964010 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 63879.1517 15408.3227 52592.5377 14593.9771 47316.3918 21110.5654 27770.2288 45313.4977 26280.0769 22490.3439 28444.8039 41054.0537 25692.7359 19386.8475 223470331 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5549.3978 14137.5996 7112.0829 4615.4783 9432.6156 4986.6042 6123.3574 3034.6786 89664.6300 4275.8580 8954.4543 5087.4650 6230.3619 6230.3619 11031.3473 14849.2758 9607.1611 6976.2970 8898.7824 7959.6579 3922.4959 5627.2805 12136.9271 4023.1970 11738.8580 12773.5717 11653.5137 3709.7866 6809.6712 8048.5247 15465.4017 8555.7093 296170919 pcag Organic Remediation Aromatics Other aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 12635.2164 10912.0579 5431.0804 10074.7064 16429.2004 19660.3331 10344.8405 9363.8051 20023.7288 18017.5568 146419.3651 13711.3002 14416.2426 199021.9890 5654.0828 5654.0828 8138.2354 26091.2317 13664.5607 12681.3265 11575.3900 9052.0688 8775.3739 10022.6192 9319.9495 15267.6477 25067.9433 10307.3733 37565.9730 10157.6723 17409.7504 17677.5702 9635.5063 18805.4262 353199143 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 5734.9061 3433.8886 5652.2838 237878758 xylc Organic Remediation Aromatics BTEX and related aromatics Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 64604.6854 65298.2197 53164.8650 69663.8585 18910.8156 212274.9194 80984.4611 83162.6592 209994.2511 73138.2810 53160.6677 2992560.0472 158909.9485 90586.4656 108096.8822 106551.1516 106551.1516 36775.7114 137676.9019 101348.5939 74637.5450 54799.4268 111355.3709 29352.8696 55218.0113 75507.6748 86309.7336 176997.1413 98473.0836 267417.6341 63144.0933 63359.5601 81333.1403 46628.2683 77570.5305 390412458 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 10892.5833 5706.1943 12434.4428 18972.6546 6129.9785 15745.5248 7675.8990 7519.2652 10934.3158 10290.2527 200027.0349 14584.1085 17458.4114 8228.9153 120079.5310 120079.5310 10034.8095 21788.2735 11153.0236 12593.9935 17779.6811 10527.5640 6177.9422 8497.5970 24250.5234 8208.3389 26525.6480 16856.3050 31372.3201 10232.1973 8556.5414 13242.2725 18522.9357 12255.7018 225568768 b_lactamase Virulence Antibiotic resistance Degradation Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 3772.8343 6360.8498 3468.9623 86004.4823 4318.3253 6295.7981 4913.6970 3873.6571 5015.2670 6564.5339 2350.7336 10097.8065 2965.1790 3875.5218 11852.0104 169793518 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 54205.4337 43973.2936 4688.1045 18490.7269 5294.6273 5107.5198 5142.8814 10086.2618 9954.9419 7832.9357 773002.9321 13600.0368 7405.3045 21088.4285 8608.8137 8608.8137 5096.3118 8810.6409 8010.7720 9942.7656 35299.6928 7363.0747 3169.4598 5886.5415 9949.3837 4470.1858 28843.4762 6746.1382 10400.2753 2754.7115 117699.5273 7012.2444 4506.5820 45468.4911 407776331 poba Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor pacificus pht-3B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 93309.4126 24808.1007 57656.8811 44328.8489 16062.3838 14449.7198 172473.7923 83731.2652 208502.0336 65566.7675 136208.6994 58030.1713 2133737.4513 94159.0692 123362.7594 91656.7369 78903.1763 78903.1763 42311.2257 107846.7711 50661.9113 151169.2680 154457.1334 156753.8112 65107.4448 66746.2168 75281.3480 99368.0581 173827.8562 41738.8218 88442.3750 94809.8679 58381.9435 65013.4842 35171.3419 153077.4654 218288588 dehh109 Organic Remediation Chlorinated solvents NA Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 7906.8413 11349.8502 4763.7850 8505.5339 8887.3002 3557.4183 4761.9477 6058.6461 13311.1181 3739.7483 77771.4531 7486.2817 9135.5757 9104.7410 7674.7076 7674.7076 5304.3485 15568.4804 8611.4394 8478.2062 13197.1271 17070.2238 3765.3031 6836.8506 9223.2623 12354.1905 28229.9077 10583.2962 13857.2877 13499.1134 8283.6292 10322.6846 6195.2018 8984.0128 359818447 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 47422.0473 35953.9602 60223.1343 79773.3220 33723.3963 22374.7546 22466.4238 13307.6135 22276.2926 30258.9858 52715.6222 1106744.9478 40984.9084 48272.7646 32611.5509 42713.0085 42713.0085 26338.8334 76711.8467 33621.6747 79916.9673 51659.1450 40152.5207 16247.7381 34545.1303 83944.7481 32793.2688 143987.4164 44127.9858 76383.2735 16089.4485 27872.1982 27996.3679 26999.0474 38137.7592 389691235 cmci Organic Remediation Aromatics Other aromatics Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 4882.4498 1943.4475 1943.4475 13766.7651 311094750 ppx Phosphorus Polyphosphate degradation NA Lactobacillus oris PB013-T2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 11023.6585 13436.6775 14034.3761 107570.4868 14022.5201 123066.4643 16175.1215 15697.0250 18657.0264 4619412.6813 16496.0702 19208.9618 14958.2168 19346.9348 19346.9348 17175.7048 21127.6083 10416.2961 12506.3325 14288.1346 188111.0022 6443.7141 12823.7759 15955.1698 8580.7977 33729.5281 12746.8303 21569.8087 42957.0776 15583.5876 16229.7018 12034.2777 20963.8457 219965775 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 187685.4074 12111.0240 20646.8558 33152.9782 83378.2621 57528.6101 17719.0011 75416.0383 9360.6168 37290.2724 21408.4075 34124.8719 407250.6403 33237.6652 42620.8027 52217.2524 33850.3161 33850.3161 13261.3935 43736.3687 59720.2545 22835.8659 60011.5027 25331.2688 19985.9777 26725.3431 40239.5113 99368.1905 55699.2342 68120.5211 35023.6542 22733.1037 19199.8776 41487.8559 41782.7690 31651.8209 116249158 nahf Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6999.0804 21992.1980 3848.6560 8048.5641 18849.8412 14968.9902 4924.5745 5299.5818 6774.7823 6551.0167 176221.4966 9084.5244 10645.3774 7408.3046 4561.9557 4561.9557 7696.8357 10612.7525 9017.8097 6846.3250 8473.7382 8930.6660 3039.2589 8337.3253 12801.7169 16573.2381 15161.9499 11848.1183 11121.7712 5990.8937 10790.1383 12454.8390 5808.3001 4613.5565 351592988 terc Metal Homeostasis Tellurium Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 7559.9327 2786.3957 3646.5107 5105.0096 5039.8014 15177.6042 10042.2363 69259.0314 8288.4216 8358.1026 4726.1037 8640.7329 12292.5482 5010.8611 8398.3881 10525.3361 12029.5908 5668.5356 10845.8097 5222.7885 11350.8907 12805.1683 12568.5461 2635.3100 5897.3828 8172.5137 5858.9769 7263.7421 164659143 glx Carbon Cycling Carbon degradation Lignin Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 33491.0041 29325.5645 209444.5910 19180.5442 23319.3261 47214.8705 38331.2690 11595.2333 41492.9983 70911.8189 45179.7286 438418.4517 28902.3068 46266.0073 43250.7888 20955.5878 20955.5878 20676.1073 94693.3214 25919.0356 29970.7030 41390.7508 39733.0787 22969.5717 23439.7082 114717.7369 23961.0011 78029.5134 31000.8853 44248.4993 32653.6456 33552.8886 34177.7879 28112.8216 58970.0308 29828649 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 23097.7187 24818.0067 29603.5713 46064.5414 52498.3430 10212.5479 669846.7224 10119.0413 33945.7882 59295.0232 65849.5536 418109.7532 32850.2442 34507.1692 29718.8211 17593.2328 17593.2328 19107.4446 23929.5694 23462.8612 25550.8610 32946.8180 26211.9808 41718.7247 19997.3045 34030.7759 23765.1221 38007.9279 23248.5131 36900.5524 12579.8665 17167.9984 30526.7838 23308.2011 26096.2331 374584729 arsm Metal Homeostasis Arsenic Detoxification Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 27278.7097 35656.4428 8202.5944 14468.6083 11606.8968 16091.8639 36380.4650 44490.4072 68870.9301 471562.8288 87707.7908 27734.2225 71313.0753 28714.5533 28714.5533 20121.0906 28852.5219 22294.7224 21061.6862 127146.7357 22827.7480 58108.1399 30080.5260 38175.8031 20929.6102 69864.5038 216167.6002 33896.7963 18925.1375 51040.0989 23156.0770 27828.6237 19045.6885 118169201 dehh Organic Remediation Chlorinated solvents NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9669.2981 10695.1415 3349.9135 13648.1325 5624.3847 2982.4369 26976.6606 3517.5003 185899.4488 18367.3238 8737.9739 10803.0489 5376.1066 5376.1066 5635.9571 18246.1509 12563.2210 10538.2759 3365.5296 11931.8225 8815.3913 9026.1950 19427.3416 8850.4907 29579.1363 2400.4142 8984.9878 14993.6778 2264.8898 8248.9437 169624381 ara Carbon Cycling Carbon degradation Hemicellulose Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 4190.0059 52300.7442 6798.6818 2516.5496 3457.3602 4890.1375 77460.1343 5084.0756 4546.8711 2280.7034 2280.7034 4349.4390 9478.8113 5932.8498 5459.6819 4659.9680 6535.6039 10555.8642 6644.6630 7866.6635 2636.6030 4464.5051 3405.5331 3161.6884 5886.4640 34017174 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4229.8953 1764.9754 1928.9843 4003.3436 4112.0647 3679.6172 2609.6700 6000.4385 4112.3328 5545.5722 4560.9299 2300.3607 2232.6939 6618.7213 2520.9105 10018.2500 3741.1632 6234.2269 2477.7715 2892.9537 2874.4963 6104.3724 302423926 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 9291.5019 44848.9464 42697.6817 4260.0475 4203.4238 61772.2310 3337.3408 6646.1179 10046.3052 3525.1459 182342.2491 5785.4598 8994.6539 10034.0639 39100.7753 39100.7753 4496.2657 15426.1141 5777.4437 10227.0599 21738.0000 6318.2407 19897.1299 4142.2965 8405.2803 3829.5430 15974.4490 5575.9798 9011.8301 4853.8516 6540.7601 11640.8023 3109.5120 5603.3480 38427032 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22051.4143 10052.2913 2767.0113 4027.5379 13377.5339 10978.7680 18403.9162 71888.8744 6958.7337 15831.1726 5753.4300 5536.5014 5536.5014 5837.3916 41979.7796 5991.5001 11009.8939 10554.2777 10148.7821 8092.0254 10877.4992 6289.9217 9032.6269 18360.8271 13083.9934 11801.9477 4547.6838 15028.5394 7905.8974 6452.5160 7845.2137 374848027 alkb Organic Remediation Other Hydrocarbons NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 55831.1886 32326.2035 12174.5167 15275.2132 4602.8270 15249.6942 37457.1800 23683.5911 24409.3161 43952.6895 46331.6768 482363.7738 27071.7774 66950.4409 49253.2406 44979.9387 44979.9387 19678.7311 61318.5399 47240.1735 54531.9957 28743.7694 29644.0362 53400.1275 29900.0653 43278.5212 56344.9956 70681.5808 39546.7029 41479.1331 27205.0502 61583.6566 39439.4047 25765.1623 59736.2381 116693468 limeh Carbon Cycling Carbon degradation Terpenes Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 137532.9544 10451.8151 9602.3282 15002.6087 75307.8293 12314.1035 20025.2005 5607.3811 12129.4364 25518.8301 12681.4511 264739.7374 28124.4873 22084.5304 70754.0093 46651.8246 46651.8246 12104.4344 28160.5878 12436.4081 29966.4236 17647.8230 23980.7779 32342.4044 13328.2981 70343.9129 18389.9347 60013.6151 14918.4541 29269.7454 41111.7741 19930.9169 18723.8976 9624.0664 29579.4472 84713304 pcpe Organic Remediation Herbicides related compound NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 62365.2384 54324.3243 36497.0440 16913.2400 44540.5020 90686.5067 12492.1779 30279.7237 18484.0071 15059.9170 164477.8570 20825.9295 1281690.2448 38175.8428 79277.5921 65776.5202 154446.0412 154446.0412 35942.4469 32874.7832 58391.2230 19199.5986 324600.0413 55641.0855 15729.5190 24854.9117 44627.5117 48174.7752 114634.6752 67552.6567 43878.1521 23742.6057 26972.3682 25073.9318 18483.4485 23802.7313 302896818 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 11131.1141 34402.5087 6635.1957 8287.9175 5276.5204 5276.5204 15207.3245 19693.4153 17632.9895 8248.5956 2540.4406 2463.1652 18974.8549 14287.1257 9636.3806 5244.3767 3620.7951 3059.9631 3004.1264 73534331 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 53665.0205 13075.4815 10927.4465 20012.7715 8044.5498 11582.8094 13150.0335 11439.7728 20362.5934 32668.2374 13999.9265 404910.1934 25831.0736 28297.4637 17335.3988 13995.5794 13995.5794 12909.4779 31150.2288 17843.5982 18537.1978 22583.3517 27229.5277 10579.1042 13095.5747 18475.9664 11731.0022 36664.0555 12441.8137 32131.3556 9428.8024 17280.9168 13039.6258 8106.1584 23249.4619 339478367 cellobiase Carbon Cycling Carbon degradation Cellulose Bifidobacterium breve UCC2003 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 18576.3662 25133.1144 7153.9209 13863.9386 11294.2751 9460.5569 16314.7987 64661.0520 20226.7951 9933.3088 203299.6051 18370.3496 12092.7418 15868.7651 5849.6363 5849.6363 9738.0620 25745.3091 16387.2662 13595.8089 22935.8978 27858.8369 8948.6905 8420.2866 24960.2909 8540.5881 38986.8293 12655.8143 22463.4690 8689.5502 10697.9259 18442.9613 7651.3881 18941.6514 389879536 bphd Organic Remediation Aromatics Polycyclic aromatics Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 4227.3184 7717.0848 9211.6225 2704.8668 5232.3337 193175.5439 4106.3574 4613.7293 3945.3461 71173.4540 3720.5206 5970.5065 15581.2258 2767.9026 2767.9026 3089.1122 7162.6001 7049.8514 12459.4913 7452.0396 5670.8361 2879.5228 9821.4897 17760.5966 8774.8064 12894.3752 18444.7080 4346.8749 3912.2810 4889.0454 15030.1353 10046.2466 390444241 amyA Carbon Cycling Carbon degradation Starch Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 6082.6186 8782.4687 9079.4546 2563.8706 335339490 amyA Carbon Cycling Carbon degradation Starch Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 8980.7278 7470.4522 21196.5605 9801.6429 25095.9232 6594.4602 9339.3062 8920.6433 5928.2335 216877.6260 9654.2910 7115.3991 8595.6606 4314.3940 4314.3940 3964.1675 19239.8119 8022.3154 8944.2459 13450.0176 8907.3955 4162.6950 8693.8528 6826.8731 6535.1786 37027.3192 14947.6208 10520.9039 8214.6457 10905.2336 11428.5577 4999.0466 10266.4500 34391462 norb Nitrogen Denitrification NA Nitrosomonas sp. TA-921i-NH4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 4234.2941 6220.5601 4184.0560 3089.1368 4380.7315 4415.0904 2632.0603 69303.1749 3818.7189 6379.0400 1952.9648 1952.9648 3396.3811 8230.2776 5779.9832 8484.2161 7145.5195 11701.1841 3006.0587 3515.3758 7654.8923 3386.4524 11536.6723 4833.6565 7350.8821 3982.0678 3790.5584 4275.4185 3815.3856 7987.3527 91200182 hao Nitrogen Nitrification NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 7611.8843 8890.0946 7333.8102 9168.9673 3776.5352 6274.2011 6884.7368 9204.6831 114164.6064 7102.1112 6435.7076 5304.6800 3421.1899 3421.1899 6014.3552 12245.5276 8347.5211 6229.7628 7917.7720 5525.3671 2884.9059 2438.0324 8741.5281 3166.7730 9955.9988 4274.2139 7659.3116 6002.3087 5493.8180 4203.6005 3445.3121 11943.9738 404259653 catb Organic Remediation Aromatics BTEX and related aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 8003.9246 5846.1649 8570.3118 12970.9363 15425.6894 4071.9496 2782.0855 70646.6083 4639.6046 4227.7823 6358.7941 12717.8625 12717.8625 3538.5645 9204.2584 4658.9243 4584.5537 8818.3381 4873.8044 3128.4359 3200.6591 12515.6972 10754.9258 13427.2148 8115.9056 2219.8091 3525.6181 3285.2511 3092.6290 8451.0197 309368354 pgk Carbon Cycling Carbon fixation Calvin cycle Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 12659.2970 30930.1410 8249.5515 11791.3422 91782.2166 14471.5564 10910.4760 5950.1349 7570.7039 21868.4991 35111.7279 196546.8156 44866.2191 8539.4516 20616.6124 7386.8115 7386.8115 20324.3473 18210.9471 10249.1242 17087.0133 19101.6524 26071.2223 21615.9464 17328.8786 13526.3052 18167.5056 28334.1323 40049.1523 17443.2455 7641.1780 14284.7013 14486.2659 6135.4733 23324.8450 121701041 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 63504.9341 30587.7644 685176.7741 26850.0928 5109.4122 5697.9039 279950.4664 8441.1536 28768.3360 16286.1163 14659.9804 328335.2776 13636.1508 19508.8740 20224.1253 16320.6790 16320.6790 6958.7429 22501.3220 24063.5224 117162.1957 25100.7580 45970.8782 65797.8331 11738.6272 257667.2641 163941.0534 138557.6866 177293.7844 19691.5921 10800.3890 13559.4126 12809.7554 133348.0612 71996.7309 289185423 amyA Carbon Cycling Carbon degradation Starch Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 8822.5209 6113.8183 6290.1238 7789.9820 6951.0806 2343.2797 11600.4121 2971.4935 3703.8106 6042.8091 3933.2061 4457.5636 5625.8428 8280.8682 6799.3703 5442.0005 5442.0005 4372.0099 7904.3231 5847.9186 5252.3960 6392.1245 9829.1762 4694.9517 4575.0917 9568.3983 3125.0979 12039.4196 9736.3688 7000.1258 3427.3313 4683.4214 5198.7335 3002.7704 4902.0171 28809300 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 8527.8037 13244.9705 3839.0445 3843.3869 3162.6593 10203.9313 28162.5140 4378.0713 74038.9526 7578.0675 4860.9641 8529.8471 8529.8471 3781.0912 10771.9216 8313.0136 8049.9377 7061.5252 2636.4889 5151.6221 9505.9021 3756.7396 14175.9014 7446.2096 6907.4727 2843.6386 3153.5271 5551.5031 3166.7332 7449.5213 83016464 actin_Cryptophyta Other Phylogenetic NA Rhodomonas chrysoidea superkingdom:Eukaryota;class:Cryptophyta;order:Pyrenomonadales;family:Pyrenomonadaceae;genus:Rhodomonas; 7501.8930 14635.2392 5125.0538 9881.9565 5904.8625 7850.3686 10013.2979 6488.1615 6890.2452 12103.4078 340534.1209 5375.6858 11966.4024 11966.4024 15061.5131 5451.4050 8078.9155 10338.7599 4698.9841 7605.6834 9979.9650 15931.5161 15062.9873 9769.6621 9679.2761 7202.8799 19444.1347 29329.3794 8405.6746 82791415 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9650.5912 2863.8757 3849.6690 4644.0046 8830.1634 12847.2956 5540.4587 458166.6513 9870.8612 6389.2170 9110.7813 6548.8672 6548.8672 7080.7728 13937.5422 7983.3920 6224.9872 12920.6598 7259.5715 6784.7155 11190.9086 12195.2132 5640.6696 24785.4638 5874.5459 17217.5552 6416.1567 7722.4676 9527.7788 5994.6728 10871.8346 111073745 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11097.9386 66646.5588 10537.3532 20275.4097 8381.6838 15382.8796 17565.3429 15542.6072 60212.6531 36023.0698 712913.3179 26152.8826 22130.7191 15814.7046 26494.0013 26494.0013 40285.2131 81222.7155 50800.5423 34731.2993 12142.6120 28809.5304 26912.4632 21545.5558 60503.4512 30481.3149 26795.2857 20881.8144 12237.4549 197711271 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 30579.6051 42009.8184 24303.5399 21280.9936 31666.3585 19451.3796 43398.4200 23920.2891 22807.0706 32466.5162 54622.0376 37444.1606 572528.8537 36748.0814 30607.2671 49622.0697 39619.0846 39619.0846 22412.3119 77526.6475 22646.9210 21822.3514 27398.1143 38756.2574 71336.7255 31047.4752 122349.5748 28326.5441 209382.8851 69336.0051 42828.6815 40557.8623 30125.2871 54302.9913 17212.1870 27839.6154 379990469 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 36657.4809 6076.1678 18996.4778 16795.2077 204364.2392 12933.8459 19208.3945 5658.0993 6228.0925 6853.6650 24329.1688 237158.8870 9862.5312 20675.0470 13199.7982 17573.7768 17573.7768 6237.0430 37805.7993 10443.7273 14265.3289 28294.1214 11421.1571 23891.4859 13171.4679 11206.0484 38339.3383 47113.8368 27107.2226 19539.9837 15883.8047 11718.1578 20976.2100 12968.5714 11392.8177 226313697 terc Metal Homeostasis Tellurium Detoxification Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 9837.1853 5543.2173 5491.0479 6119.0849 5651.1148 4671.2491 2870.6406 6069.2641 10300.6632 4169.5912 156531.3081 8428.0062 4885.0321 5255.3055 5255.3055 3344.7108 12540.7635 7180.6873 5546.9582 8387.3012 11721.7184 4220.7052 5316.3575 11819.6809 4192.4227 16150.8787 10062.3556 10983.7683 4059.8177 9430.4544 6742.4635 4263.3922 11179.0517 84386987 alginase Carbon Cycling Carbon degradation Alginate Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 482373.4371 9323.8762 2812.7789 3146.9989 3979.8906 4539.4123 94191.1309 6167.4165 3946.6395 3587.6565 3587.6565 2783.3761 5712.9178 4337.8883 4305.5004 3111.3273 2998.4103 5674.0150 2748.4763 4389.2752 25264.2418 3076.3949 4407.7970 4930.4804 9598.9659 150959230 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 902151.4942 28601.8846 140616.4489 143769.2355 133849.0291 25519.3953 108198.6011 63089.5102 42364.9360 52541.9580 138689.3491 67399.0989 1350669.4885 445340.6048 245370.4935 99351.1328 546190.5896 546190.5896 47772.3888 134279.9610 64325.0656 526083.6026 219799.1956 727359.3607 66988.4148 45015.1463 88808.9270 49185.3842 311550.3804 138008.1555 208722.5569 44670.5635 76864.6554 65994.8256 52978.3430 122329.7058 255955931 nitrate_reductase Nitrogen N Assimilation NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 160786.5463 12986.0155 111190.1191 57372.2470 51214.3740 51666.5885 81770.2247 515695.1290 157261.7147 101935.2468 146337.6072 158167.1886 2210932.1829 126171.0289 222229.7952 222531.0596 135978.1729 135978.1729 55060.1396 160034.3966 114388.0087 137500.5382 168919.8070 75355.3620 59824.5807 275989.4199 61696.2815 227681.5633 84958.8422 80103.6230 124224.0022 95675.2864 165612.1522 213013106 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25299.1961 17912.3049 54781.4855 15978.3217 13742.8584 33213.7429 14270.2330 13632.7012 27038.0878 15452.7062 327299.0856 16099.4692 14250.2343 25736.1273 11066.8897 11066.8897 18690.9652 23577.9363 16832.8318 36936.9122 20387.4562 28159.8393 13722.9061 11615.5312 19356.0509 15151.2359 53163.1158 26746.2202 18381.0658 19438.3904 24850.9446 27176.7468 24365.4409 30790.4646 398837233 catb Organic Remediation Aromatics BTEX and related aromatics Herbaspirillum sp. YR522 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 28759.5325 17026.1998 14124.7620 18058.4239 14896.0344 22261.8835 34500.2679 292142.8560 24001.0474 26582.5041 40613.2599 66926.7214 353517.0073 30141.5225 57418.6760 42077.7628 42285.0689 42285.0689 20739.6462 56659.4246 95382.7363 43396.5919 52325.0429 63620.9012 44141.7175 21414.8012 45952.0390 60371.1277 96117.6630 68340.8194 34246.5588 36392.6333 40764.1050 41610.0977 35090.8888 27974.2415 164455360 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5412.0312 8105.3726 2775.3951 5221.7274 5776.8848 8945.3886 3330.3919 142911.5657 9454.3068 5040.1724 4875.0783 9031.7079 6743.4888 5137.7035 7204.2794 6309.2012 2230.3417 3817.9209 10622.2825 3464.2616 12682.3762 5971.2034 8500.0717 3843.3840 4418.4824 4435.6506 4288.6791 10272.9906 91786533 pcag Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7241.7386 5342.7464 161006.5400 7979.3162 4337.1404 5138.6533 9144.5436 221215639 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 4289.0729 2463.3958 4341.0179 4452.3895 3595.2266 342316482 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12055.9823 30140.6224 15458.8353 31668.5678 12179.1523 19849.0924 10170.3439 45465.3055 7068.8972 94350.5561 228704.6069 28232.9586 10862.9096 13305.4495 9476.1073 9476.1073 3106.7031 17868.0671 5570.2250 50244.2956 23789.6487 4476.4016 9386.8233 14547.7064 12989.0976 15240.4347 25497.4474 13200.2214 30207.2523 4017.3885 14916.1919 8689.2251 6478.6626 11337.6463 144577478 actin_Viridiplantae Other Phylogenetic NA Ostreococcus lucimarinus CCE9901 NA 17680.9799 4356.7717 9411.7754 4475.7545 31381.2622 7123.3369 3089.2508 6700.9836 11407.5682 6633.7163 135101.0370 6507.9379 6696.8149 6386.3762 7389.2436 7389.2436 12708.7909 5824.0293 21988.4664 12953.0099 4807.2212 3146.0919 22619.8031 30787.8206 13179.9552 4005.1031 14115.5074 7697.5125 5029.2926 7913.6270 19549.7248 6275.2071 255724796 phospholipase_B_fungi virulence degradation NA Candida tropicalis MYA-3404 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida tropicalis; 63715.5859 7458.8323 12976.1539 9115.1378 15895.6018 9550.5889 12379.8390 6859.3944 13096.4986 8509.3266 224627.3631 20611.3331 11888.7374 7292.9117 8545.2034 8545.2034 43180.0787 29230.1915 8896.1213 290262.1454 38706.8890 429312.9115 23457.6761 9026.3543 15886.3648 5826.1025 31324.4784 14330.4414 14678.0947 32022.9649 24536.5715 7211.7753 20165.3071 79008.0550 89096476 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5822.2283 2621.0328 3274.5564 3802.5600 12292.7686 3255.5046 4249.1202 6618.6784 8516.6741 40510.1851 6723.7500 2159.3751 4225.8478 2751.7688 326199480 chnb Organic Remediation Other Hydrocarbons NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 62087.8305 13197.9771 55418.3097 25459.3021 23006.8518 82248.4717 40867.9023 12139.0653 25460.6455 32251.0346 29083.6950 404478.9971 22582.7102 41897.9384 36067.2697 20333.2688 20333.2688 28524.0012 51065.2133 25492.6331 32240.6971 221932.1172 45135.5634 16551.2380 28048.1033 29893.5768 29702.3807 68613.0343 42487.8910 43626.3900 15390.0582 34570.5871 40265.4176 21228.8604 35896.9017 294894860 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 6305.1315 2925.1425 4792.5390 4867.6656 7197.3326 6991.1960 4533.6134 2570.6047 2570.6047 3591.2241 9913.9614 7022.8266 6157.7812 5673.0153 6262.4882 2444.2130 4019.0293 7541.2505 2601.6626 10346.8213 7884.0555 8948.8345 3365.8110 4274.8609 3803.1768 3614.7387 12370.0145 163261779 one_ring_23diox Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 4794.5966 11679.3723 5472.9900 5067.9117 3874.1636 5231.5500 2967.7430 4294.1888 5432.7708 6282.3850 3851.5989 3698.8753 7401.2184 5100.5920 7468.9075 4636.0542 7247.9747 2981.5994 2895.6904 7373.5283 2788.5798 10966.9037 3227.4002 3968.8046 9289.6808 157917860 endochitinase Carbon Cycling Carbon degradation Chitin Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 24936.4966 24528.3231 9645.4281 8416.7569 13401.9976 10056.8273 23281.5099 7212.8800 9192.7552 20575.2042 24364.0971 1079436.6899 29130.9970 24716.3455 72360.4929 10355.7033 10355.7033 9295.1039 23159.6540 16937.3341 12353.7957 22169.3767 225178.7436 8615.6120 8631.7607 17854.6697 30761.6794 35608.2990 23974.0998 16837.3134 9023.0008 14660.2009 27092.9585 12494.4554 24225.8862 354585487 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4449.2515 24447.3477 8947.6166 31884.1082 2824.4836 2824.4836 5753.2372 7061.9564 4249.0761 23786.4703 6464.2419 2255.1594 3402.9450 16673.2955 84381355 alkb Organic Remediation Other Hydrocarbons NA Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 10023.3776 13985.1797 6663.1941 10409.0934 4057.4199 4768.7871 2015.2134 7398.6711 7550.6703 4709.3039 152404.2898 13546.2169 11307.1471 7079.3323 5889.7476 5889.7476 6945.2635 15143.0298 7626.3462 7749.2550 10635.1039 13002.4474 6525.4135 4720.2631 12935.0611 4159.0080 19458.3333 4787.0063 12550.2477 5883.7594 6519.2949 5414.5089 5033.3076 15159.2048 189204386 RgaE Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 23158.0181 27486.6925 20432.1994 9638.5634 37347.8661 14037.3844 16326.7150 19133.5286 26214.2369 11047.0343 463026.8321 25332.2544 23715.2218 22849.2661 10297.3485 10297.3485 16036.4126 30330.8627 30762.5800 17648.2457 37449.1659 15642.8861 104362.8533 23898.5165 24180.0809 16340.9355 43451.4909 22535.5162 28986.4888 70992.5053 17989.5091 37864.5856 9890.5792 32664.7457 339018107 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 12510.9307 13710.6742 3552.0518 4210.3306 169522.5349 23522.7746 12845.4343 118752.5938 12101.6908 14621.4290 6733.7648 6867.5079 6867.5079 3221.8126 13848.8276 4905.4972 10420.9188 23753.3506 8581.6959 7023.8609 7171.5921 10980.7269 8490.4236 15602.6791 4945.5795 6242.0413 232749.9933 4982.1521 13829.9803 315588568 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 15276.8120 10905.3351 11365.1973 7893.4242 16023.0789 25452.0298 4924.7793 12877.7597 17059.0388 291436.5123 27624.4901 75798.3886 14143.8802 14839.5365 14839.5365 21464.0270 21809.5999 11570.7994 383731.8178 38580.0115 12247.8890 25594.8254 7932.8182 9558.6406 14993.1595 34122.2080 13036.2776 15411.7613 8710.4956 15535.3176 37098.7040 7860.8373 18394.6805 210069567 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 19323.0046 11222.0547 2265.5935 5329.5799 25431.6571 20124.5968 75121.3824 5512.8285 30857.7375 2558.7823 2558.7823 3649.3444 13876.4242 3218.6198 5438.4426 4958.3276 4916.0320 2824.9663 7571.2125 5585.4398 9851.9673 8914.5235 11730.1262 6837.4822 4214.3378 12470.7125 4660.6118 5534.6353 4809.5896 338536551 amyA Carbon Cycling Carbon degradation Starch Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 34234.7499 12524.0754 9716.3540 8487.2434 21414.9033 11160.5113 218207.5503 13326.5283 11175.1425 11371.3834 15149.6710 5039.5355 15080.4004 332361977 pula Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK49 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 11036.6596 10637.4992 8430.1438 10607.1040 6471.6286 10409.5854 8443.0879 5707.4790 10796.6855 14443.2631 5797.7167 221570.4411 12764.2249 10559.3849 7983.1331 5722.5044 5722.5044 9834.4815 14218.7806 15876.5561 15584.1941 12139.2526 21284.7006 7136.2702 6687.4813 17452.1341 5718.7567 23351.0537 12090.7365 15393.4519 5976.2710 8126.4474 7825.0006 7604.3054 22107.8101 20803910 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium loti R7A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 42927.5969 34832.8089 18834.1397 98340.3210 38579.2092 9380.8455 44110.6805 19619.5133 24243.4757 22603.8209 19951.1038 39498.6969 333998.1174 31522.1913 40933.9955 114351.4426 21091.0561 21091.0561 19177.1033 38846.7606 20741.6981 23762.5085 48271.7170 72742.0090 24067.3668 17895.5449 60231.0569 25390.9232 77117.5549 27787.8129 43983.6751 19785.2058 27661.3284 27433.0803 12072.3693 44220.1165 148555200 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 11175.6749 18220.0724 8945.5809 7258.3490 12260.7019 9359.6283 4477.3811 11125.6833 48914.1123 16959.8437 258518.7849 8122.3237 12298.5084 23056.1109 12615.3591 12615.3591 7929.1968 29975.6459 11997.6236 18201.9628 16918.6312 11286.7093 7653.1099 18722.7374 19261.2156 9467.8774 34299.4791 6299.4277 17535.4723 8869.9163 11627.3811 19849.4990 12909.8936 11079.7094 138896772 cellobiase Carbon Cycling Carbon degradation Cellulose Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 7510.8746 2152.1423 17208.6432 4192.1308 3345.9046 7789.3253 12699.2763 134367.7244 5732.4243 13813.6437 7556.3805 4885.0478 4885.0478 2771.5271 10840.8972 4652.2380 6805.3834 4067.8754 2842.3336 5399.6248 7196.9203 7769.3729 16631.0016 14653.6993 9214.3556 17757.0004 8140.2580 8902.4410 7051.8070 214045433 hbh Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6663.7857 6630.0330 9911.8757 34939.6676 2555.1957 6495.9929 4211.3574 5005.7533 3831.5753 5260.0480 63929.3465 5083.7287 3764.6774 4812.2534 4031.3212 4031.3212 4347.1093 18673.0323 7079.4070 4572.3245 17133.7203 7527.1874 4608.5025 6170.1629 7820.1311 3390.2868 15375.0687 7132.1746 10573.2706 9842.5854 5354.1935 5130.4206 3992.1450 52650.5327 116624210 dehh109 Organic Remediation Chlorinated solvents NA Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 38448.6491 48976.2808 37352.1894 50488.5932 12510.4957 113689.9987 25358.4833 20573.6523 45242.1278 31768.1596 30108.7101 959231.2589 46846.3710 40959.4950 41167.1168 24487.1791 24487.1791 32150.8860 53250.0343 34970.7634 78865.4554 40907.6950 71175.4923 25461.8571 22297.0480 43496.0267 18455.2636 79774.7605 21931.8212 45604.0103 16791.8489 23898.4357 35182.2740 21198.7130 54521.1936 338175665 amyA Carbon Cycling Carbon degradation Starch Parachlamydia acanthamoebae UV-7 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Parachlamydiaceae;genus:Parachlamydia;species:Parachlamydia acanthamoebae; 4984.4518 115378016 ppx Phosphorus Polyphosphate degradation NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10795.7548 4704.4988 14094.8469 2646.3094 4476.7098 4691.5467 6365.1242 5628.6202 5628.6202 2520.9971 3415.8679 8787.4869 326758.5538 4043.4105 11771.7947 18005.4682 3525.3473 9087.6879 13971.6478 2121.8413 2640.1543 297563119 endoglucanase Carbon Cycling Carbon degradation Cellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 6131.9687 22818.0058 5423.7535 2941.8523 10648.7886 8662.3445 4492.7007 153754.6222 5218.0017 9079.2340 17798.8552 8401.5736 8401.5736 8240.2072 8859.6394 3896.7607 18150.8322 5572.5376 9553.2382 5620.0029 8465.0372 13803.2542 14489.0159 5154.8077 22091.8800 10089.6559 12199.7530 3260.4464 126236465 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 17267.6531 8922.7822 11666.7012 18109.2454 5934.2119 6805.9079 4089.5317 11245.4776 10158.4485 7890.7618 192904.7141 12520.0747 13535.2652 15296.0651 5700.2570 5700.2570 7485.4696 17278.8148 21832.2529 9026.0417 16991.7477 13271.7016 7631.6539 8160.7720 16969.0109 10118.6884 58978.8098 14286.4991 16820.7085 8525.9937 14918.4366 11313.6906 6219.8388 17722.0890 190012449 alginase Carbon Cycling Carbon degradation Alginate Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 16497.5017 1863726.1228 6242.5626 114507.1632 11257.3724 11455.6604 21284.8717 2014.9424 8874.5212 14784.0704 20198.9812 130921.7588 8781.9975 30774.7155 54361.1975 9946.3339 9946.3339 42523.0872 98413.0846 15628.4372 19125.0989 73226.6754 10376.6274 23289.3611 14222.8879 14144.3786 83928.7538 43456.3839 34137.2658 21303.7882 12336.8766 16360.2335 74582.7384 9450.4479 16344.8833 126729719 tktA Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 6998.5649 20989.3969 3790.6724 124753.1523 5395.7651 2397.4174 2397.4174 16071.0198 7341.6184 4824.5166 76778.1103 6804.8450 2663.7125 6430.9704 5895.5360 8275.0431 1951.8676 11967.9055 7797.2629 4648.4996 5405.5665 121714469 rgl Carbon Cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 37533.0602 9712.9353 5837.2420 4008.2360 5564.9154 5827.2240 74606.4672 3967.4726 5785.8813 2822.1232 2822.1232 9873.0100 4791.6866 4517.8193 9791.7820 3210.1225 3747.8898 5867.2347 2694.4832 11954.4366 6497.0010 8788.4613 3830.2899 9210.6799 12999.7285 16183.6840 60491383 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 10245.2997 8408.8424 7019.0044 6277.4257 4129.6716 8555.5961 9008.2480 4842.3232 142532.7896 14786.4595 7968.6444 6908.4708 3636.6904 3636.6904 8022.0996 20089.8276 9643.3884 10255.0446 15256.7595 90336.0090 4487.9122 5122.0551 11073.4801 5754.1855 26035.1561 10553.9892 23690.2187 4407.3560 6042.9033 7771.9834 5175.3958 12315.3254 298243310 mer Metal Homeostasis Mercury Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 6098.9046 3421.3787 16244.5907 3736.6924 380512208 amyA Carbon Cycling Carbon degradation Starch Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 6232.6441 5291.4037 5038.4712 4846.9168 3947.7371 3925.5865 4893.4796 5511.9447 4407.5132 132733.0645 5681.2257 9726.2030 6327.1377 2988.0595 2988.0595 4507.3760 8424.0323 5247.1866 9392.5796 6433.2098 15597.0368 3646.0971 3384.0375 9422.3722 8650.9065 16978.4371 4748.8398 6219.8563 4519.6467 3809.2842 9574.1299 3635.0703 10695.0968 367474495 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11493.2297 5138.7005 11991.7416 6858.8516 93914.1411 2596.6025 5983.0337 23683.5516 28669.6384 79933.0617 6190.0116 13879.9280 12460.3955 9715.5628 9715.5628 15358.9679 26344.0930 13297.4793 8371.1448 15537.6202 4328.6823 33590.6247 8165.9892 11243.0259 10950.6973 19056.0147 17419.5811 20808.2718 8666.2897 12781.5697 15047.0050 124104.8770 325545828 xyla Carbon Cycling Carbon degradation Hemicellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 4148.4774 4864.1229 22849.2384 2138.2062 5550.4275 9415.0010 5213.9484 83802.0164 4761.8153 4470.9978 6635.0936 6635.0936 4388.3009 8977.4991 5907.6361 5414.0074 6759.9449 3983.5388 3879.8899 6477.9707 4229.3775 9196.0254 25395.9333 15669.5301 2329.7331 10514.6020 7253.0408 3295.6641 4564.0942 323365554 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 6275.6622 4578.0034 3815.2447 2638.8972 5395.2494 6014.6775 4111.2010 164642.9551 6499.7950 7683.8819 4896.5413 2543.8555 2543.8555 4616.3210 12402.4737 8473.8704 10735.9085 10988.8981 6433.1763 2812.7604 5189.7674 10144.2247 3326.1567 16356.8007 13900.0527 10775.7777 4120.4127 5976.1859 6672.6112 3217.2177 11471.9398 93354571 catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 30967.5773 9234.0128 3767.5203 9552.9443 18860.8805 31228.8597 5151.5931 7850.6081 4791.9740 11825.2995 9074.4771 11332.2052 8754.8849 8754.8849 3758.1472 5979.1101 23282.6392 22684.8468 18084.2420 15941.6012 9147.8795 4041.9719 17211.3489 22750.5461 9375.2630 4565.3927 3379.2131 3382.2610 352106609 arsm Metal Homeostasis Arsenic Detoxification Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 37335.5920 12708.1938 32000.9045 32687.2673 40894.3876 19454.5235 30998.1448 8370.8335 43143.4653 22600.3920 15260.4461 528044.0731 21970.7675 36120.2326 49713.0335 27935.9407 27935.9407 19805.9573 27353.9624 22989.9922 107372.7380 38285.7594 45038.3404 15011.1861 15051.5481 27675.7100 13920.6984 74702.4733 26122.8712 35901.6889 10067.3491 34946.8976 65265.9940 14753.4088 29770.4606 213925440 nirb Nitrogen Assimilatory N reduction NA Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 44553.0531 454907.6830 43579.8752 38743.9965 14445.1697 61245.8240 69377.2352 44071.5298 41986.0785 49196.0731 38749.0316 2427007.2692 100555.1199 42639.7255 57277.9163 35024.2141 35024.2141 36321.5182 64074.8397 56832.2769 36777.9611 123316.8319 75641.6703 20632.1389 36816.9208 85680.0253 79519.9952 145375.6834 58588.3166 79472.0484 45167.2259 40662.5955 41637.4250 27472.9517 222792.5018 359369643 ppx Phosphorus Polyphosphate degradation NA Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 34326.6149 22500.4844 34341.8691 16555.6242 8167.4708 10172.6800 86550.0950 8915.9803 14164.0495 17399.3132 41868.2682 352334.3062 16648.4746 26291.2931 45318.3678 58515.8620 58515.8620 43898.3546 39717.5984 23886.6790 55267.7228 52591.9568 32373.5570 27703.4157 39658.4456 30033.9035 42667.8875 56159.0670 57540.3863 30970.6647 9996.1125 45169.2603 47167.8149 41818.0982 25146.9992 11344617 nosz Nitrogen Denitrification NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9104.0037 44288.2432 8798.5033 25881.9389 6732.1211 7655.5661 14073.1366 21255.5327 21176.7098 6911.4627 9704.7521 70156.2593 11714.5461 11714.5461 5932.3837 18444.4312 13423.7406 27853.5688 12370.1051 9681.7297 10404.1473 13774.2562 5761.1904 35703.5467 22191.3555 16005.1624 4940.4296 6817.1374 12773.1540 10185.5926 33043.2755 226244453 ppk Phosphorus Polyphosphate synthesis NA Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 14429.1264 13530.3285 31678.8606 44903.3951 12933.5838 18355.7513 9188.1110 209257.7056 31692.1958 869884.2566 12650.8094 20995.8756 35036.6869 14122.8736 14122.8736 12651.3076 40162.7023 41376.6494 14158.1248 116761.2607 11777.1072 25286.3961 26534.8811 25018.5617 56054.5585 50124.4993 42708.4130 39263.2315 19236.3175 50345.5938 49586.1109 25168.6649 50623.9106 118570036 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 64225.8007 417160.0127 152281.8568 7377.2363 341389.8510 10862.2051 22487.3934 10607.3668 5920.6097 73565.2655 7419.2182 11504.6630 29095.4859 9104.5643 9104.5643 4604.5269 21587.9193 11480.3108 4562.1329 82937.6033 17864.4796 28011.2495 6536.5532 11248.3261 11343.0433 25554.7939 20194.1332 17093.2549 9587.5917 13379.5662 24152.1143 11478.8777 16813.3425 149278793 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 31222.4404 157300.7496 14904.0887 25125.9487 45671.4763 25856.8450 9170.7854 22315.9287 22278.8746 128057.2972 18753.1231 272898.0833 31644.3256 23072.0505 31430.6186 12730.0763 12730.0763 18097.5814 48441.7558 21305.6199 41716.8412 31917.1766 29383.8815 9722.2865 14417.5943 48260.7745 13069.9531 118202.8057 30119.0220 29879.9043 9935.9718 18144.9073 27164.0433 12310.0846 33686.0938 359763373 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 15948.2217 4776.4787 3291.5570 6897.3060 123139.6034 85890.6443 22807.9785 8452.1365 11265.1362 7070.6881 93101.8506 23885.0073 24649.8569 11071.3203 256724239 lactase_fungi Carbon Cycling Carbon degradation Lactose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 12784.4076 4498.0707 2765.1846 4278.6657 3285.7502 6914.7490 3277.7141 11181.8368 9423.2296 3876.7819 3779.2425 6097.1416 156523583 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5845.9299 5215.7678 5903.7867 6456.9379 4486.6688 13422.1602 3857.7345 97119.9988 6821.1844 4655.4102 5379.0034 3775.5824 3775.5824 5518.3177 10617.2871 10082.0016 11081.4365 3665.1808 3558.2169 10878.1458 4517.7215 14703.6554 9744.1173 16027.7139 5101.0239 5607.3325 13214.1015 7897.2499 9812.9910 294675331 cda Carbon Cycling Carbon degradation Starch Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 6363.2872 6658.3398 11222.2863 12940.3611 4076.1195 3944.7091 5515.5585 2543.3260 97908.4296 5648.7163 2484.2624 2484.2624 3086.2283 8258.8186 4582.1414 7499.6835 4965.3202 2529.4094 2519.0938 6251.1732 2795.7418 11912.1288 5395.8547 6503.5685 3873.8888 4410.2623 6778.6482 2826.1763 9437.0072 316918965 Sir Sulfur sulfite reduction NA Enterobacteriaceae bacterium 9_2_54FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 8081.7185 4649.6945 4578.6801 2603.0481 7223.4572 9006.2472 16535.3311 177241.7092 9415.9610 11679.7345 7969.3869 7391.3151 7391.3151 6119.8748 16006.4194 10479.0039 6539.8042 9394.9286 8199.3101 5474.7739 5872.0964 8854.8776 8691.3332 18060.1024 7858.1302 10308.7238 3095.6579 4793.8470 9431.2207 4187.9446 8909.6115 112875704 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Terrabacter sp. HH4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 21939.7656 15193.0986 12966.0966 7127.2210 65112.8975 5967.2451 8729.0906 8157.3263 9391.1473 343192.7609 23411.9340 8702.7867 21402.7051 11093.7055 11093.7055 7291.3392 7274.6868 7091.2325 8074.7914 8020.4752 7024.3450 9687.6330 58547.4243 28937.9541 20275.0380 9310.5761 3041.9857 7889.5000 9377.5290 30446.4650 221739443 glucoamylase Carbon Cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 9385.1183 6134.7494 5254.2099 15311.1742 8316.1282 3263.5366 12466.9546 9686.9615 5040.5609 278119.2362 10275.4296 10532.5768 7652.7074 8706.8789 8706.8789 6324.7955 37593.0332 13525.3835 8883.0662 20173.6338 10479.2638 7145.3057 7883.5155 17466.0873 20066.3706 24222.3037 14777.4718 18656.1280 8771.6593 8593.4902 9500.0531 21557.5869 15229.1967 301341858 cutinase Carbon Cycling Carbon degradation Cutin Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7813.0887 5839.6458 9816.9856 14216.7957 5164.7142 4920.8899 10507.0713 7270.1578 10851.3493 225345.9571 11226.2007 16975.9251 10328.1835 6930.2213 6930.2213 8018.5805 22881.2590 7772.6847 6797.2855 11237.8048 9354.7391 6460.0896 7467.9467 11433.4241 5872.6774 17403.8978 10341.3230 12953.5590 4653.9642 4375.5561 8433.4623 5045.5994 11351.6349 371909455 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5204.9546 4761.0134 3819.2700 2172.3438 4875.4116 316342.2004 3606.6667 15520.4537 4197.6751 4197.6751 7824.1311 4894.6760 5301.9296 7308.1096 2031.4497 10211.1763 6761.6047 3237.2257 2957.5502 2849.2571 2995.4851 10271.9322 85671349 cmci Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 767142.3589 49518.4149 650128.9694 900027.7734 234131.8072 83004.9195 207643.0064 332608.5167 210521.0924 151210.3353 352033.9806 207419.0605 2214918.3023 234654.2263 149096.3634 191056.2579 258596.9904 258596.9904 140020.2537 164294.8259 77943.1976 67855.2062 303074.1702 65977.0203 147839.1762 164418.6627 194404.6575 125353.7966 276021.7143 136428.7540 157863.9294 112516.7420 104683.9861 305456.7027 189132.0588 594994.2918 327547804 tktA Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 19146.1011 136920.2708 6024.9383 6529.8834 19081.2705 15544.6065 251867.3778 10034.8461 16901.3609 8806.4322 189619.9935 11622.5648 13249.6976 9508.3444 12712.3871 12712.3871 7423.5549 14883.5061 10269.8629 12565.6580 19347.1280 13940.2080 8755.9383 12655.2770 10896.4571 7511.4761 7655.5089 9540.4392 11268.0093 6582.8823 9652.8279 16515.0184 22718.6122 11145.4192 325917689 amyA Carbon Cycling Carbon degradation Starch Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 12652.0983 6939.1023 7126.7216 7237.4722 4954.8795 4931.5358 4895.5830 8589.3821 18960.5617 4583.6354 5470.8693 9109.2650 10366.8977 4101.9418 4101.9418 7954.8611 15747.6218 12255.3678 8711.3811 14128.6479 9920.2154 4973.6913 6022.5043 13913.0421 6693.8693 22590.6080 10919.3353 16883.5495 7977.3799 8272.1074 17421.1644 4539.3451 18295.8934 219883278 merb Metal Homeostasis Mercury Detoxification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 12424.0374 8953.9763 21123.4330 9955.0894 3851.6900 7634.8414 2322.0042 7268.6898 8584.7180 4998.9210 131651.0011 10858.0042 11295.9233 5938.2082 7874.7510 7874.7510 5122.8102 14626.3190 8853.6251 4569.1406 9317.5012 9622.5663 3785.2187 8619.5587 16826.3667 4661.3089 21016.0799 13769.0971 14157.9420 7784.4210 6791.4084 7614.9723 5123.3824 14944.4044 357414790 urec Nitrogen Ammonification NA Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 4728.5597 6356.9573 24598.9414 18032.3966 7884.4385 1969.7895 4700.2575 3875.9077 2708.1561 148172.3167 5190.0339 8978.7284 15405.8701 10087.1478 10087.1478 4056.0977 6019.9695 5748.4460 3906.7767 5588.9480 16521.2038 3138.3726 9534.8099 10957.7972 21744.4369 3526.8608 4785.2874 5894.5663 3592.6203 40286838 scnabc Organic Remediation Others NA Methylobacterium thiocyanatum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 9008.5247 11755.8953 5426.5753 29610.4521 11942.2027 10806.0715 4097.0053 5180.2234 4644.3510 224779.0999 13259.8491 10960.8714 19239.4799 13961.4440 13961.4440 28755.0297 17603.3531 33518.3412 8131.1024 5996.1954 17259.5655 4386.2034 7415.3372 22003.3136 3200.9246 12547.7907 8352.2795 14048.2515 4737.4364 6278.3916 11092.8859 2412.4235 4359.9781 357938541 phn Organic Remediation Herbicides related compound NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5847.5326 6089.8820 2609.4940 3278.6056 2960.4266 5037.4722 2661.6842 69880.7878 3852.5852 20067.8966 2517.6679 12475.5052 4776.6494 4296.1010 6752.0993 2221.9863 4151.3254 7223.5979 2469.7528 24050.2529 18315.4449 9145.3048 2810.8592 6260.2302 3157.2201 3177.3275 6029.9726 375056388 mer Metal Homeostasis Mercury Detoxification Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 20832.7104 10341.9920 60492.6866 75674.9201 8220.0908 8824.4272 10844.1776 8569.8566 9580.3560 22741.7216 12785.5333 347790.5308 18928.9818 17766.7719 17543.0341 13402.3084 13402.3084 15430.7662 25155.5042 15462.9090 11385.9361 11981.0040 30870.8232 8466.5149 10331.9407 22040.7380 14243.5307 80142.9489 21085.9644 22354.9776 9723.1722 14315.4748 9681.4802 8127.2790 16007.2229 303294303 urec Nitrogen Ammonification NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 13405.2392 7684.7366 5342.4471 11207.9500 4297.6676 14400.4669 18308.8182 3498.4013 69294.7920 9145.7647 8500.8080 4412.7797 4566.7460 4566.7460 4352.6428 12481.5734 7561.2489 9694.3354 6887.1750 4647.7166 4864.2153 7159.0573 7862.9020 9582.8476 18891.5233 4431.0723 38706.2059 5721.4918 5946.7502 9630.0159 6451.5645 7262.1521 317052136 amyA Carbon Cycling Carbon degradation Starch Desulfurispirillum indicum S5 superkingdom:Bacteria;phylum:Chrysiogenetes;class:Chrysiogenetes;order:Chrysiogenales;family:Chrysiogenaceae;genus:Desulfurispirillum;species:Desulfurispirillum indicum; 27457.9784 8476.5637 4270.4244 9746.3959 5315.5541 7930.1338 6951.8388 15615.5899 12911.2047 9532.4740 228178.2544 8552.1411 10290.5422 21714.3997 7688.4209 7688.4209 7588.6511 19123.4250 13312.5647 16553.6295 72668.0172 10992.9314 9410.0083 11139.9808 15604.1412 10232.9129 41314.5221 5471.9496 18433.6703 5689.4107 12404.8872 31210.2928 8944.7706 14375.6513 67517499 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 17323.2638 3024.4247 2960.8834 6984.0810 3792.0444 4162.5315 5693.0494 2534.3187 5230.3407 3674.9819 3574.5671 2655.0849 10320.2585 77378703 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20181.5059 13005.9209 9092.6356 17115.5455 18186.1403 20049.6431 12367.7680 8480.8389 16794.8549 18981.3082 7416.7951 298513.7145 21015.5499 16688.1427 12383.5083 8034.3813 8034.3813 13451.6594 30114.0762 15422.0975 28789.9525 283822.0247 13871.7752 8323.9198 10076.4114 20440.2311 11274.4882 41167.3042 15513.3417 21883.8202 13860.3170 11879.4272 13271.8114 10731.5750 25786.9142 146328182 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured marine microorganism 5095.3633 6369.7081 11177.9527 2950.6127 3141.5051 5491.7013 5328.9091 2592.3390 96126.9359 18698.1704 4399.1858 7020.6015 7020.6015 4402.0767 16559.6558 6143.0133 7344.9709 4559.6070 5515.2863 3955.1435 3306.4610 9377.8320 3387.9068 14191.6612 5201.1225 9095.8652 3735.9717 4284.0404 6397.8095 3452.5366 8557.4527 379063770 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 5788.6377 15618.2750 30860.0559 7336.3327 4110.8355 10017.5887 9028.6665 3600.5580 101960.9840 6622.9620 4759.5571 3110.3651 3110.3651 7053.0052 9154.0066 7496.3462 8377.4934 8328.4165 8347.2736 3757.9684 5940.4032 9426.3560 4314.0570 10762.2972 16472.2217 12627.8952 4529.5796 5426.9459 8936.9255 4631.3887 8986.0860 197625436 ppk Phosphorus Polyphosphate synthesis NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 9774.2538 4332.9378 27530.0293 11872.2682 4337.6023 14509.3706 2047.2208 6184.6735 9619.6332 10503.2434 196400.2647 10713.5305 11077.8834 95319.4606 10497.5751 10497.5751 9281.4128 12046.4800 7462.8206 6275.9950 5348.4392 4559.0344 4691.0156 13088.0588 8159.3966 13313.7046 7487.6200 13928.7848 4772.8676 7478.2907 6698.3737 3042.3479 11483.4642 112463999 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7378.1691 2291.0889 128722.6636 3422.0975 7861.0130 9497.2012 14675.7782 112107.4535 10597.5285 8211.8323 94756.3897 7686.8750 7686.8750 5036.9456 9865.5369 6090.4372 4082.8414 28414.0893 4589.9860 3139.9905 6411.5124 9974.0814 3145.5488 25834.2319 7410.1868 10712.4708 5454.4473 13119.9954 9794.3311 45077.2828 9089.3571 237808451 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 5985.8897 8252.9096 12306.4582 2847.2826 7298.2999 7298.2999 4638.2655 189336264 mer Metal Homeostasis Mercury Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 11023.3892 4290.2925 19407.5240 2248.6101 3404.2911 29284.6475 8043.6399 71474.9539 12292.0292 4270.6273 4150.1078 3291.2464 3291.2464 2723.5370 19294.7420 5516.9081 7522.4162 11946.3660 4362.2513 5298.3154 12495.7427 8272.5229 10391.3512 7912.3912 12598.7830 4463.3853 6872.6928 12549.7320 15928.1016 11278.1141 350548278 rgl Carbon Cycling Carbon degradation Pectin Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 160408.8999 20913.6787 54193.4953 59566.5915 7607.2499 16645.5171 98114.0410 23724.9474 51314.3149 51494.0700 47144.3603 1912491.7693 54716.5144 194072.1220 78386.3903 99300.1394 99300.1394 22816.1012 162537.5132 35530.8795 162855.3351 125882.9752 34402.7675 69210.6756 43490.5714 58103.7061 43934.9204 167744.3801 69457.3036 53746.5681 27745.2563 59824.9646 49987.7803 33235.0283 119510.6076 17130233 PRI Carbon Cycling Carbon fixation Calvin cycle Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6873.7841 3835.5221 6591.4730 2939.3642 116784.0303 9481.0778 3952.1564 2579.4384 2579.4384 10782.0808 6422.3076 3821.8871 9142.1128 9732.1521 2435.9149 4371.8854 5831.8363 2430.5230 17313.8196 6294.9193 7681.7235 2258.7757 3294.6424 5093.7365 2222.7657 6751.6121 83845876 ppx Phosphorus Polyphosphate degradation NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 57725.4213 12296.5793 92265.4710 104461.0006 23672.7657 5737.2699 31521.9881 29570.0137 22480.4811 34264.4788 50958.0510 43372.2444 767691.5353 37416.0369 69917.2217 42943.7664 24778.6968 24778.6968 34864.3337 58663.5213 42238.6828 64979.1242 50440.8199 51162.3905 29005.6237 24854.1486 38551.2197 39603.2492 95831.4674 46313.2578 50320.6869 27284.1067 35260.1030 40410.8165 32592.2513 44717.8880 332701077 chitinase Carbon Cycling Carbon degradation Chitin Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 8217.2716 211905653 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15292.7612 5913.3729 596574.0655 6104.7819 6397.5071 3068.5824 10913.2118 10856.6321 7424.1731 335062.3490 11157.3350 14368.4291 6573.5826 24336.8930 24336.8930 7550.1358 12004.6230 9804.7348 22595.8292 19865.4191 14608.6717 6100.2025 8257.8554 14688.9538 8524.1377 32110.5167 16845.1746 15403.2601 7947.8395 14360.5017 8209.6843 27117.6645 23188.8563 322434098 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 4610.6672 5060.6684 3123.8304 2439.5116 3156.8770 7433.0834 7537.7534 6562.4617 23979.7129 7875.2255 4924.3420 7878.1538 2890.6300 2421.8172 4776.8453 108765660 pcag Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 5621.5014 5681.4029 19215.1473 11034.0847 4632.8864 3347.8289 4292.7821 3881.7909 121623.2208 49846.8445 10873.0252 35999.7890 10546.9278 10546.9278 9037.0684 4784.1561 4266.6682 8694.0942 2209.7372 3423.4928 9127.7507 2559.2252 26569.3981 9346.1765 9471.6540 3139.2467 5005.8745 4704.2470 3064.2054 118766644 EF1a_Oxymonads Other Phylogenetic NA Oxymonadida environmental sample superkingdom:Eukaryota;order:Oxymonadida; 5139.9464 8991.1033 3027.2784 6044.9795 7292.3027 163976.5857 5632.6824 2288.1697 2288.1697 5179.1722 10599.2963 9107.6213 5999.0317 7667.7166 6926.5329 6340.1981 3566.6303 6455.9351 3373.5561 9384.7349 5490.2593 10004.5398 2594.3732 4288.6545 4887.3448 3325.6799 11024.7795 389663957 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 11864.1468 5702.7894 5343.8111 15006.4798 12913.0929 4262.5557 3167.7395 11638.3831 10339.6075 10339.6075 10005.1161 6871.5990 4154.3065 2312.8379 3033.8522 10156.0597 4489.7785 3286.6574 4440.8383 341935573 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. raphani 756C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 14768.3334 11482.0189 15787.0175 17719.4049 9554.9910 76367.7409 12087.2328 17798.2540 13147.6135 79694.5337 7845.6868 174433.7716 21584.8105 31446.7395 16134.6696 14428.0933 14428.0933 12230.2486 76210.8090 14425.2817 27185.7922 18366.6450 15963.5833 9106.4845 8669.5695 17750.0613 14125.3627 51300.5020 11454.3742 20506.1683 15198.3488 12413.3474 27310.8911 17782.1606 20761.2107 2624008 xylanase Carbon Cycling Carbon degradation Hemicellulose Cryptococcus adeliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Filobasidiales;genus:Cryptococcus; 26954.6485 2498.9743 3116.6279 89651.4278 1856.2642 1856.2642 3406.5898 356659249 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 10750.0762 7362.7503 27136.1193 5749.7661 2077.6485 6021.2646 14479.5924 7697.0865 16744.3733 19376.0844 251160.9594 18793.8340 10846.1659 38603.0748 8010.3345 8010.3345 7878.1897 29746.8848 11690.3864 9996.5171 15859.8881 18072.5847 7087.9543 8528.9791 17136.6252 7427.7141 23891.6840 9784.0197 23762.6204 5791.5372 15143.3453 11825.3159 4457.2672 15099.8210 377567236 one_ring_12diox Organic Remediation Aromatics Other aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 38510.1892 12073.0359 34512.6961 31677.0318 9177.9758 399095.0756 109263.1156 15803.1654 20164.8573 24422.6466 14347.4790 2004281.1567 73205.5407 32187.6920 17621.1039 19504.5336 19504.5336 44587.8899 32162.6904 21371.2955 26995.9810 92839.9726 216899.2619 16969.7484 24844.7473 26529.1805 16250.0753 43916.4688 23478.6960 28751.9228 17129.6663 20087.7014 21342.4743 15763.7769 37545.6310 260218054 ppx Phosphorus Polyphosphate degradation NA Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 5574.1147 56383.2815 17045.0571 1935.7321 2963.5688 3021.2821 2657.9722 4550.1487 5216.9200 2189.9375 2189.9375 3232.5867 5841.6012 4257.3346 5952.5811 5382.8408 3266.0523 12440.8590 2401.1244 11409.4453 5932.7190 11371.4642 2509.0352 2668.6078 7861.3089 2975.0028 8981.1775 358636900 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 39944.9858 136806.9709 113327.0447 101021.3378 11951.8326 78738.3683 29402.7156 16127.1230 20618.7423 83142.9288 26250.5900 898608.7871 36260.8489 59996.1838 51196.5448 40236.8245 40236.8245 99235.9922 27646.5137 20150.4104 14682.3502 42168.8303 126457.7393 12242.5170 40547.6518 30592.4690 15985.9333 123443.0230 16350.1996 28392.9833 14322.8926 28387.6545 44030.6767 24494.3813 37741.1567 363422826 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 5082.3841 5238.2575 4133.9823 3014.0898 3898.0976 4823.2437 6476.8092 2903.7171 20215.2634 6118.9306 3216.3281 3216.3281 4405.1108 13029.4669 7287.3536 8500.6020 8219.6510 9397.7261 5445.3706 31635.3668 40051.5127 3802.4096 15598.6925 8337.9994 8306.9082 2849.6741 8238.8442 7608.4051 3843.2215 9077.9405 261407242 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6145.1199 10767.8508 7008.5534 6125.5238 4181.0966 3167.0722 7156.2172 6685.3171 7949.3841 117718.7405 10764.5688 4396.7506 6670.6893 4290.0624 4290.0624 6128.3373 10435.4189 5747.8710 8887.8130 8864.6640 9251.2428 4066.6043 6928.6927 18269.0884 5848.5132 15710.5030 5255.2036 9565.1817 4792.1298 5769.0893 6572.4763 7583.4289 8484.6104 167762605 amyA Carbon Cycling Carbon degradation Starch Bacteroides stercoris ATCC 43183 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 9088.6848 5291.5371 10769.7427 4586.1093 4893.5599 8607.5653 6304.4851 3579.8121 160161.2625 5964.9026 7768.8139 6240.2657 3491.0174 3491.0174 6197.6095 11256.3328 8489.4588 12641.6091 7100.0230 6587.3045 6046.2695 7369.2504 10687.4375 5061.7443 14662.2442 6938.5503 10361.3038 6032.9507 5127.8152 7441.0069 4204.3109 8640.4717 383318091 Sir Sulfur sulfite reduction NA Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 12039.9663 15329.6376 29764.9329 9178.5361 9178.5361 33128.3682 13739.8299 24381.5504 5553.1771 16333.6013 4782.8041 8964.9613 13557.3975 325921453 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 13563.7576 6845.5650 9343.9031 12917.8362 10919.9647 5701.7681 4811.3104 8914.2472 13424.5854 6901.0420 178036.0725 10122.5428 10448.8399 7814.0846 6688.9171 6688.9171 7878.4721 22213.3748 12123.4677 17480.5206 15925.2249 10975.8390 5569.9423 5141.9632 16485.8494 10103.9355 25898.6163 15631.4241 20441.5787 8053.2720 10023.1804 9178.5550 7608.1636 15893.6617 121556293 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 28733.4274 48143.5492 23598.2820 34668.0762 7691.6024 24147.5977 45745.3386 12037.8007 32689.8529 47098.3913 29754.0843 289392.6410 28247.9486 116598.8949 37577.2631 18509.5863 18509.5863 8214.2054 27843.2630 31557.4610 25307.7247 61364.5441 25936.6522 21268.1568 15813.0263 26459.8687 17085.2648 87246.6996 34703.8194 92731.9704 22079.4807 24665.9892 43770.4910 15168.7617 33852.7039 393162211 bphd Organic Remediation Aromatics Polycyclic aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 7897.5158 5579.9102 3335.6254 2877.1066 5301.7423 5675.8601 2724.0442 63274.0747 4838.2146 5775.1052 7404.5890 5568.4594 8075.0938 5797.3473 7757.5463 3324.5817 4844.8188 5455.6352 3126.3250 13417.1272 6887.2002 8782.9099 2686.7118 2899.2830 3884.7751 3374.5564 7291.1867 338208226 exaa(moxf) Organic Remediation Chlorinated solvents NA Acidiphilium sp. PM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 7493.6760 6895.5825 10693.0169 4456.7944 7994.9925 3022.0446 7464.2475 5927.6093 3697.5913 78198.8896 20236.5517 7147.1589 7637.7791 4654.4023 4654.4023 3307.5595 8145.8413 7523.2575 4060.5455 7754.6468 6995.9922 12598.6337 4762.9889 5583.8965 3376.8304 12278.8781 6938.5750 12002.8047 3418.6344 5516.4855 5951.9268 10094.7782 8022.2186 75704121 glucoamylase Carbon Cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 5010.7832 5548.9822 17883.7610 3574.3627 33098.6880 4542.6261 5018.2973 3484.9825 64825.5997 5066.4402 4315.5282 2435.2916 2435.2916 3829.8137 10600.7939 5762.9401 11177.7800 4163.4944 3279.0978 7262.8385 5364.2492 10176.5549 7014.7625 3193.9851 7090.3034 4168.8177 1855.1099 13806.8372 225192951 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Athelia rolfsii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 9716.7279 7326.4237 7043.8155 7540.1620 6372.9954 16218.6758 7978.3606 10729.2413 4912.9794 152575.7348 5722.8493 7568.4466 24993.6874 3831.2738 3831.2738 5655.6612 14859.4528 8860.5897 6504.6165 11060.4216 8500.3449 4979.9534 10395.5567 17534.6514 4472.5440 233526.0722 10252.4636 12997.4255 5591.3112 12079.5434 8413.9385 6159.0349 12119.1499 323358552 chitinase Carbon Cycling Carbon degradation Chitin Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 24504.4945 6613.9272 31379.5511 65001.5361 21686.6742 12822.4335 17850.8991 5551.3054 41409.3256 16447.0950 32910.2435 350972.1174 47305.9238 212009.2316 27478.7007 49095.6668 49095.6668 20004.1648 42024.3503 23375.2382 37853.7250 24270.4985 28089.8580 17911.1016 10369.6997 133753.5562 19648.2017 76262.3528 106654.8539 49897.9215 13079.1101 17097.1235 34595.3508 13236.7029 34678.4127 139003446 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 20344.3082 9021.3318 13858.7677 9444.4741 3885.0685 2089.8597 5385.9122 16422.6284 4355.6977 6138433.7030 4039.9280 6932.9500 6137.8994 6074.4273 6074.4273 3683.4044 13091.7097 7929.3656 3669.7145 7855.8861 5537.2263 9450.0323 3988.3934 8806.7019 131635.2066 16655.3723 4236.2523 6703.3515 2331.8349 7889.5530 7398.5483 3189.4888 6849.1265 261854727 metc Metal Homeostasis Mercury Detoxification Halothiobacillus neapolitanus c2 132235.6856 14671.5675 25316.6269 29165.1621 53525.1019 7020.2333 17001.4610 41806.9838 29999.5641 33203.7599 117594.2095 41313.5760 547536.2054 43469.5767 32290.0177 37939.6159 44652.2797 44652.2797 29984.4506 60729.4394 28586.1701 42062.1473 46242.7116 33660.0616 15917.7533 28178.2031 141598.1370 18066.6133 70057.8149 37752.2550 41652.2197 27198.4314 41991.0565 33909.0534 31050.1182 52714.2597 384080525 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10332.9352 9054.6866 5262.4247 3280.7589 4039.2618 4116.0295 8107.3923 10000.0906 5382.4710 11153.7702 10207.5799 4510.7671 4510.7671 5249.6134 15259.1345 5779.7643 12873.2488 11892.0141 10759.1849 38264.3198 14926.7697 4225.4121 14364.3831 14095.5891 8247.2222 3954.2500 3810.4191 5621.1513 4947.5806 6182.7201 123967446 xylj Organic Remediation Aromatics BTEX and related aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 17057.3078 9448.3545 7729.7033 11111.8235 10958.1266 20336.2021 4236.2738 6661.5101 14330.6127 9059.5385 214918.1021 15939.3400 9393.7810 16215.5324 7416.4240 7416.4240 32108.3878 24821.3691 19700.1739 104507.1035 44099.0572 16014.4031 17526.3029 16952.1834 14970.5729 7232.2732 305125.8805 16505.4928 17723.2840 6941.5284 10001.1472 12899.1424 6054.3085 21280.1005 78102047 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7758.4021 110082.2940 39533.9988 6871.9548 22450.9406 7883.3899 4835.0320 30326.2399 3194.0664 4253.0173 7502.2287 108096.8578 5977.8705 7256.6352 4239.7964 6605.5788 6605.5788 7363.6912 11159.5787 6356.1169 5997.2434 8793.1877 5907.8401 12083.9161 3658.2598 7123.4140 18885.7231 16785.7107 7902.9190 8925.9235 7555.5547 7158.5637 4643.0823 3464.0888 14289.3396 296023114 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 64744.2837 15059.4068 33553.3198 89076.1144 1874519.7109 15485.3570 20769.0171 10250.3673 15827.9364 28091.4788 27715.8890 629129.9989 21124.3688 27189.6102 42315.2710 13308.4669 13308.4669 16596.1282 42537.7145 32671.2104 23755.8974 26737.8928 34459.1072 15823.5714 17034.3826 27002.4673 27726.6294 208754.7032 30489.0877 29723.3236 25532.6430 21160.4690 51669.3875 17714.4345 32699.9303 398114664 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 36829.9790 14137.0609 49348.2033 36472.0622 38528.6986 10578.8860 15505.3554 188342.0461 22193.0828 32367.9744 34883.3546 54128.8904 780898.6852 40174.0238 42113.7948 127799.2281 28535.9286 28535.9286 20207.0513 47418.6008 31291.0133 44994.6319 34342.4965 49079.1956 30510.8021 34806.8008 153956.5651 33216.6776 93668.2853 38547.7928 76327.5271 20064.2572 32950.2171 47580.2094 30523.0900 40816.1668 189340375 dsra Sulfur sulfite reduction NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 5543.4722 7536.8984 5871.5645 3694.2787 7701.2852 9962.8681 7896.7999 12178.2594 4234.1243 1399880.1308 6517.8840 7079.8643 9933.5132 6156.7458 6156.7458 17124.3158 17574.3863 7592.5162 8589.4312 18868.2944 4548.8582 2857.2163 6051.0630 11657.2394 4432.4483 21485.5583 7693.1676 14077.0140 5082.2772 5611.0203 8705.2350 25389.8654 11102.7883 51534869 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8842.3606 4167.3245 7762.0624 5229.0124 4335.6496 4246.4075 13070.9083 6683.5837 186855.3943 8690.6918 24421.4888 6513.0066 3001.6038 3001.6038 5899.5659 12265.0040 7378.5584 14529.2513 9611.5582 13849.3284 4634.7325 5708.1488 12209.7933 5309.5880 17274.9114 5399.0580 10693.6931 11027.4946 9011.3641 8886.8189 7876.0834 13721.0620 298244759 arsc Metal Homeostasis Arsenic Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 7086.5428 4549.3929 21667.7543 3564.1584 8181.7261 4892.7504 12804.1596 43417.5278 169643.0260 9603.6810 13581.8951 6142.8816 11317.7582 11317.7582 5015.5021 13254.3776 10042.2873 8594.6573 12773.3411 15129.4817 4682.8592 4609.5682 11991.0839 3368.5526 21386.9084 10817.6976 13929.8110 19355.5352 6618.8703 13608.6757 5488.1134 12033.2202 97954617 nirk Nitrogen Denitrification NA Pseudomonas sp. R-26828 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8795.0622 5111.2403 9996.3257 25465.0863 4563.0057 20332.0615 11645.8092 4419.1535 4421.8766 7300.9876 5791.9185 133214.0396 10689.9715 8837.1971 10349.6001 10848.4283 10848.4283 5971.4676 13172.5323 8479.3033 6913.4555 25471.5942 8668.5707 3934.9994 3976.5256 24949.1142 3630.8772 19460.7147 23547.3819 50273.5666 4292.4733 9069.2387 4666.7565 3129.1317 8705.2779 78169038 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5348.1670 6543.7732 66672.2252 3701.2484 3065.1233 3840.4267 4080.1155 4660.8506 2170.1945 2170.1945 5243.1089 4360.2126 2696.4428 2380.5540 4022.3622 2047.1756 3900.8738 2282.6227 300390311 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7109.8088 5695.6331 6304.0734 8041.7324 5367.9950 166518.3957 16664.7043 4254.2851 4358.3374 2692.6151 2692.6151 2605.8422 7568.5746 8262.2477 15495.0499 4492.5113 7333.0123 4994.7383 43044.6116 4208.8209 6278.7153 5242.9057 5393.8489 4461.6513 2140.0223 7366.4473 133739263 tehb Metal Homeostasis Tellurium Detoxification Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 16705.5337 7746.5956 3628.3714 6141.5671 3162.7607 93036.5602 4422.9718 6692.6796 4929.3750 4978.0924 6771.4143 2782.7005 4205.5255 3256.0032 5351.9921 10293.7137 2526.7945 3594.1015 5719.8789 3246.8426 8020.0281 334343281 badh Organic Remediation Aromatics Other aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 11558.9769 114430.9655 5298.9576 9036.4199 10995.5746 14681.2503 16585.8075 6581.9791 7976.4799 13810.7330 5980.8915 110847.7119 9535.8462 15671.6032 12187.7714 6101.6107 6101.6107 5123.7871 25736.8223 10251.4843 7833.7443 14170.9931 11591.6948 5606.5026 7998.4961 110037.5725 17346.1161 24072.5331 11237.1826 13780.4438 6844.0701 8549.8165 11291.6234 8581.3157 10812.4523 325549754 pcag Organic Remediation Aromatics Other aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 4218.8818 15236.8807 72524.9214 30861.9976 4134.2150 1886.8957 1886.8957 3877.0003 5914.4663 296399.5491 2133.0549 4311.6412 223586018 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3517.5621 85897.9676 4332.3097 3650.5235 1912.3587 5665.9070 170691803 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 31497.4228 88520.5253 28461.1474 18015.8799 14201.8090 358096.8625 24544.6632 18172.1434 23406.2147 42181.9543 18628.9497 652761.4886 30972.6982 25117.1739 31376.1029 19622.2749 19622.2749 17002.1166 42922.4303 41970.2602 26969.4253 36384.9715 45771.8567 21477.4071 20694.0458 33460.7099 58215.7490 62214.3374 37327.3948 36381.4434 16838.2185 30215.4873 39964.2050 14455.8630 64855.4236 209886424 pgk Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 25949.3862 6190.4364 5548.5845 13560.9381 2445.6453 4687.2604 1967.8003 7552.0910 4484.3171 205085.5939 5383.9456 12479.9466 4192.4371 4114.8471 4114.8471 30337.4729 12684.6474 6672.2633 151309.4321 7669.9296 26616.1394 5189.9046 4929.8928 20168.5470 19915.4732 25864.0729 7974.4446 9113.0741 3547.0735 7318.4900 4809.7548 2204.8489 12661158 endochitinase Carbon Cycling Carbon degradation Chitin Cellulomonas sp. GM13 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 13232.7278 21282.0499 9154.1908 8213.9584 7214.6563 7047.2463 9533.4638 11235.2571 8505.1034 188525.5516 21710.1367 7448.4224 7873.4952 14199.8239 14199.8239 6696.9316 20039.5469 11298.3717 10937.4498 46864.7685 10060.1363 6363.4917 7253.5344 15201.3260 7371.8641 20585.6827 6157.2997 17824.6242 7071.0607 8956.9790 11154.1959 9091.9640 13693.9261 225791775 ara Carbon Cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 81702.8228 13637.8157 138153.5454 3116.1581 4367.5936 4477.0605 7729.7401 9361.4706 88536.2491 5334.5077 4788.8340 6655.4508 3238.5000 3238.5000 6466.9170 9593.0881 7567.6556 8146.2195 7077.0502 5928.0184 2588.9516 19300.1614 8521.6057 3230.4124 12397.0646 6984.2875 7400.1790 2615.2340 3846.5294 11090.4780 3922.8813 13826.6265 192897548 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 11820.9415 249662.7794 26699.8600 10115.7612 23147.1970 8291.1185 8803.9750 4356.2372 9527.4167 9805.9290 11815.2137 276980.4529 10895.8832 15068.5625 5839.3418 5839.3418 21990.8182 28205.4338 15576.3687 11095.8411 11977.2864 14258.5667 6266.1226 6005.5052 11828.9723 9988.1940 19348.2032 14127.2511 55145.2447 9830.9168 14120.0487 11313.8067 6119.9954 31047.8472 190890925 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 147751.3886 8694.0819 327955.1538 3179.5120 11104.1402 22118.1635 7866.7877 13308.0080 113149.0630 5981.1643 6451.2769 4121.4307 4162.7273 4162.7273 49487.0275 22475.1353 6346.5951 96650.0124 29891.4188 7902.1609 18936.4401 12995.6392 2897.0052 15118.2303 7091.5009 11234.6874 5437.3467 15565.1343 95020.6222 3248.5558 58002388 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 4581.9725 2478.3085 3886.1515 4225.5775 7740.3775 72721.2585 4624.0287 3707.5481 2710.1567 3950.9851 4181.9554 4472.5790 7440.0541 5759.8410 2579.2224 3756.0020 4706.6572 94554210 xyla Carbon Cycling Carbon degradation Hemicellulose Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 144125.8688 416764.6604 42363.5181 24824.8481 15298.8475 12706.9801 8996.8102 36726.6771 120777.0925 20038.6858 44262.8250 91239.7362 313355.5856 21851.3524 22209.1414 33904.7209 28249.0183 28249.0183 156247.4959 35643.1367 41883.0146 76193.8523 37706.0517 12116.4509 19910.4069 27455.1993 24207.3438 26612.1432 60003.4701 57910.2589 42680.8154 8882.0373 39427.0879 121755.5806 22914.2171 30251.2281 329961641 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 10576.8778 6659.9587 8024.4746 3365.9884 2179.2127 3482.2681 7947.2246 67998.9561 5706.2965 3429.5991 5168.4081 2737.1906 2737.1906 3484.3259 10086.0632 4337.7658 6411.8872 11807.7934 6129.2516 3640.9861 5309.4165 6881.7029 3043.0263 12982.2667 8373.1003 2824.6017 3439.6731 5365.3124 3535.8344 7502.3996 357076319 xyla Carbon Cycling Carbon degradation Hemicellulose Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 60664.8154 36625.9554 43773.4089 7089.5952 4812.5821 53512.7683 28226.7251 30207.0681 23050.5021 29715.3609 22574.2277 822090.2431 38647.6747 106515.8162 32002.7378 58537.0973 58537.0973 17894.1432 52584.9232 28979.0274 56755.7222 73478.6133 35243.0459 76926.1462 25031.4358 26774.0634 26916.3799 66420.0423 33900.5731 28856.4205 8962.9842 36841.3328 43481.0457 32557.3561 50407.3291 324114336 pme Carbon Cycling Carbon degradation Pectin Escherichia fergusonii B253 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 40490.3261 17640.9644 77899.6125 31161.5786 39760.3431 14561.6866 101263.7936 50782.5138 38780.8688 41775.8879 40457.0367 66371.4461 747460.9046 44087.2997 274624.4330 94815.3391 34768.0128 34768.0128 23865.6952 67297.9394 41712.2720 361383.9341 80930.8320 42506.5681 62741.8818 43983.5152 43807.6029 54202.6322 82376.9972 91014.2835 55401.1421 142886.7747 187125.1843 91815.7704 32343.6740 97771.7814 56798123 narg Nitrogen Denitrification NA Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10488.5723 16072.0259 11261.8150 1732.1267 13233.2491 2754.8210 12039.8130 15746.5216 5426.5440 552005.7404 8660.7471 10488.5600 19933.0079 11407.3126 11407.3126 3848.4630 75394.7133 10792.3839 9592.1767 21527.7063 4499.8656 4235.4874 7214.6191 21305.5867 5246.6583 26479.0971 11437.5594 14140.6241 5362.1200 8468.8867 7460.8609 4037.3116 8926.5733 148644906 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 14591.9814 2113.3547 3638.7106 248561.1276 2194.7606 2194.7606 3001.7501 9238.7191 4653.6144 4710.3512 5459.1295 5314.5479 2139.1439 2653.9411 5021.6336 2701.8324 14906.2172 4628.2060 2297.8294 3438.1675 2968.0755 9362.4901 258404301 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 651538.5883 93215.0470 694159.9169 334622.7820 161367.9520 335868.0763 165680.1066 320074.6290 206815.1346 271120.5920 263634.8837 193459.6784 10671652.5884 291722.1565 413098.3488 459162.6102 368466.7293 368466.7293 174932.4014 289204.8089 170943.3536 498185.9061 304498.5869 305810.1529 129551.3451 185433.3156 238004.9769 280539.9624 501882.2663 268299.5965 283469.6299 281428.6450 201158.1667 231471.6686 135104.1964 441163.0374 384214833 linb Organic Remediation Pesticides related compound NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 112416.9193 30013.9030 118268.5244 57690.0952 36498.8829 58132.3852 56797.8770 65169.2331 48491.7698 50183.0881 80105.4358 133272.4283 1202425.1759 182011.9524 87896.8219 143205.0544 115949.4316 115949.4316 111965.0761 125228.2733 41612.2481 46009.7117 78625.1186 59025.6252 42976.1411 39887.9843 103918.6522 134385.1187 206334.5712 83793.9699 163190.3992 93176.8900 67948.2614 69670.3403 178757.3015 48205.4204 344259914 tehb Metal Homeostasis Tellurium Detoxification Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 4831.8871 8224.0851 74104.4906 23052.0248 4118.7253 9554.2652 2446.7365 2446.7365 7456.2332 4299.7048 8681.5578 3119.4620 8899.1552 6740.1000 3108.8187 3614.1337 5845.8695 2248.3426 5889.6304 217970154 TIM Carbon Cycling Carbon fixation Calvin cycle Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 26381.3481 5584.6994 8171.7888 24793.6438 4830.2836 7837.1967 191030.3805 18275.5509 193608.7931 40777.0132 10893.4673 16397.1729 7116.8173 7116.8173 19403.2456 44490.3375 10560.1509 13121.0067 19034.7038 11573.7515 89675.4296 6079.9857 11866.2601 16604.4120 23653.5846 42061.7376 26053.6350 42068.1508 11437.8083 9311.8376 17148.9460 13579.8210 302404006 axe Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 60299.9953 16110.4820 104141.0463 70831.8830 88263.9712 61243.5771 28055.9906 57876.7182 91682.0563 118480.6926 202515.8495 39393.4584 979829.0984 64612.5853 76378.6930 79841.7120 32985.4137 32985.4137 27705.6068 48719.8212 47061.7004 37547.2928 36056.6626 47064.4493 14957.9298 25770.1989 116282.3673 19019.3563 111376.6715 60005.7133 72519.8179 24909.9493 30924.6883 387418.0362 19969.5987 45305.3109 198242124 cysI Sulfur Other NA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 60097.2590 13037.1074 39181.8870 33655.0249 84188.7078 10282.8281 20813.7865 102892.4070 36645.8469 35985.3929 40071.1282 30763.8789 838524.9281 44110.1140 60540.0469 64270.2030 32176.8967 32176.8967 26809.3442 51219.6476 26339.2576 35727.6076 74672.3879 344060.3161 27660.6156 40253.4667 47700.9298 26814.5220 117857.8112 20347.4731 51933.2711 34545.3613 36720.8136 39620.2741 21054.7561 73847.0729 256690165 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 10071.4420 10601.0570 2291.7232 98261.7159 3484.7061 40745.0836 3172.4823 5242.3689 3765.1860 2791.7147 2791.7147 7109.4143 7430.7140 4694.1203 5654.9558 3059.9131 4512.6380 7053.1361 2973.6739 20201.4198 4566.0515 10041.9743 14538.1217 13833.3669 8894.9463 4823.2917 144905828 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13016.9555 6438.0237 14638.5635 4978.4310 5788.2880 3374.4199 12362.2973 12758.3851 9634.1933 6154.5959 149217.4873 10432.1313 9787.2638 9631.1699 6903.0864 6903.0864 4094.0131 14557.9051 8174.3409 5345.0540 7747.4069 6026.7293 5672.7157 6394.9852 3172.4845 20127.6082 5181.2196 9896.1139 3553.4396 5257.1552 6701.9884 3384.3262 8445.0769 293606281 cysJ Sulfur Reduction NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 19791.6676 13894.2321 2824.1393 9822.4364 58986.6681 7419.9855 11924.5106 19207.6582 78392.0323 6122.5145 65720.5518 105762.4437 3996.0066 3996.0066 4658.3763 12407.0857 5253.9098 4256.4072 7342.0400 6424.5968 2977.8680 13096.8471 7264.7724 367682.0704 12985.6039 10813.6965 7025.7805 5718.8443 26664.1255 8439.2473 4686.5779 17566.3529 99038096 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 75585.3617 3739.6091 5262.3395 6366.5313 2508.5466 27657619 chnc Organic Remediation Other Hydrocarbons NA Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 10288.9035 4814.1898 150345.7624 31744.4344 3479.0655 18195.9371 7977.1016 10325.8412 9546.2876 241906.5595 11024.4135 12112.5198 43157.6210 19582.1535 19582.1535 9962.1544 32875.6337 12286.2237 30007.4262 8827.3515 8760.8518 4491.9060 9134.2539 20651.2304 6937.6339 38892.2702 19531.1288 17790.8456 104523.3281 8187.9352 17865.8992 4438.1197 14334.6010 317485454 urec Nitrogen Ammonification NA Bilophila wadsworthia 3_1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila;species:Bilophila wadsworthia; 19125.9136 38940.0012 9847.3067 16788.7586 81614.6023 32911.4793 22123.6512 48809.4811 10362.7584 23516.9671 36873.6897 32720.7940 633109.1519 15084.5044 32069.7692 49898.1567 77651.1687 77651.1687 10389.1706 20848.2295 13683.9687 17766.3478 104170.6301 55908.5581 30600.0442 19093.5739 50166.9699 7477.5792 56298.9163 33713.7466 26500.2795 12307.9197 17916.3260 16176.8742 16740.9162 16364.8018 193085272 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 11915.8278 3762.7388 5657.0906 5375.1775 6550.4068 4382.5795 86481.0582 4479.7811 5137.3709 14339.0827 4480.2714 11495.1982 6270.0408 6529.8411 5945.1272 4471.2768 2686.4518 3225.0265 7686.5240 2534.8687 11262.4873 9320.1892 8329.5925 4390.3623 5869.2596 3855.8419 2508.4287 7146.5601 283813245 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 43903.0320 5613.1221 7626.7913 12840.2258 6464.5497 129820.4332 3112.2739 3112.2739 2988.0532 5552.4719 5833.6686 26462.3642 2317.0525 4403.8449 5992.8038 2128.4343 5941.8703 6982.9904 1787.9895 4253.6417 6123.3100 347949180 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured Rhodococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4605.0501 4070.8491 4759.7197 18027.9600 54590.7861 3896.2954 4036.5014 5394.8937 3250.1397 5507.0450 3875.6763 2256.1197 4626.2208 3384.9492 9202.1863 6608.1964 2326.2516 3932.0054 2878.4935 3990.9672 7185.6217 241113659 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 110407.6062 379031.6215 30554.9893 132825.4251 56435.8942 18112.8164 125480.1474 176878.8300 26899.3530 34078.0513 71802.4872 50311.1026 772152.6726 68464.2334 65592.0643 30249.9192 38692.0757 38692.0757 45476.9387 78118.0956 57435.6697 43149.4978 367269.2377 49027.8104 110050.5996 35517.4416 78123.5682 151306.1763 113756.6837 62164.2232 62767.8814 124527.1524 67423.5029 65416.8039 29610.4831 42711.9169 301114825 hsp90_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 18896.8937 9755.7235 8730.7860 3012.7762 124543.3632 15349.3525 7332.0690 14995.3327 5284.5523 487415.4151 64604.6050 14415.6630 7525.4894 6397.1892 6397.1892 4163.3405 15632.0843 7611.7788 6551.2807 5665.7067 7231.1090 5772.6499 11855.8219 14110.6283 6047.6540 30658.0501 13114.9536 10646.4981 4668.5080 6477.9682 5449.4775 5735.8584 31722.4277 32895084 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7626.1866 7439.9628 7975.1777 7866.1494 3155.4685 7593.2070 9396.8287 12740.3169 129654.7260 10363.0258 12163.4419 6613.1956 4346.7245 4346.7245 71627.3520 15081.3932 7570.0041 10018.5370 10504.9082 8194.9608 4739.9233 14812.3063 12497.3483 11646.2945 15964.4221 10641.2094 40022.3073 4042.3565 18693.9843 9302.9989 11281.3907 13394.0054 302409724 amyA Carbon Cycling Carbon degradation Starch Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 69340.1598 206791.8420 7110.6666 306908.9697 11282.3542 13666.3163 36470.0558 32748.1098 12481.0985 15261.8298 18755.9912 484062.5714 23211.2276 27299.9520 37733.3021 83295.9154 83295.9154 17003.9724 49583.3155 64364.4457 34447.2448 123047.4339 55029.3766 18847.8090 42542.8541 24126.5792 16415.7704 88985.6447 28000.9087 105219.9439 37003.4854 60920.1848 21387.0451 12463.6114 54970.9038 74038408 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 167676.9801 21952.3855 12952.3387 17403.9994 955993.6853 77258.8232 331716.9660 4139.0477 38312.2742 28312.8057 17649.8567 466960.0697 23135.4274 50095.4561 76407.3324 47340.4982 47340.4982 24225.5382 367291.8072 24821.6792 46987.3232 298282.8666 19792.7439 7318.3684 38919.2731 131568.0929 30918.9016 67761.3917 67163.1325 56638.2480 63104.5469 24539.8546 87196.5036 13087.0557 29235.8505 383778031 alkb Organic Remediation Other Hydrocarbons NA Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 26654.4737 14133.1128 18243.5050 219301.6913 9802.7775 7104.2918 24781.8919 140688.4262 19652.1486 14816.7939 14942.9342 819511.1160 87060.8652 17813.3885 58953.2296 10379.0705 10379.0705 7626.1527 24959.7738 30112.0187 15398.1837 32494.3696 21173.6029 15421.1391 14370.4280 15167.4965 21394.0910 60988.4476 15689.7866 25373.1759 7052.8921 18545.8750 22410.3144 8782.6836 42489.3617 315001624 aoxb Metal Homeostasis Arsenic Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 13748.7644 8739.2105 2581.5592 8995.2352 4916.9732 9651.0541 4505.8935 6528.8411 4307.8752 2751.5691 2751.5691 9933.6449 14296.9022 4319.5311 3618.7197 3734.5979 36096.0584 8558.4633 9102.6186 2934.2117 4248.6330 5674.1764 3570.3852 15828.1471 76666785 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 70331.3557 7918.0626 11423.1302 34090.9358 6362.8518 51038.1245 17739.6655 5627.5127 18399.1812 16363.8411 107470.0380 416349.9231 16845.0995 35283.8952 19163.7606 14332.9080 14332.9080 44030.9490 83834.4415 23667.6724 18608.3421 65962.1817 21377.7808 10335.4903 32910.5286 25619.3970 23196.8283 56400.0891 20714.6407 165789.5566 13266.8897 38911.9571 22687.1767 19809.5923 29449.3721 83026010 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17240.1380 5201.9823 11275.8567 4988.6547 4414.7273 5220.7313 5323.6050 5067.4197 156066398 hsp90_Fornicata Other Phylogenetic NA Trimitus sp. TRION superkingdom:Eukaryota;family:Enteromonadidae;genus:Trimitus; 6153.1117 143199.7979 7141.3375 5194.5425 4081.4089 30233.9127 3441.7504 4213.9436 4958.1550 2883.8807 101232.1277 8686.5152 7164.0117 5100.5531 6439.6034 13920.1808 7719.0257 6251.9475 10606.7676 15431.4454 3973.2500 5040.2694 10462.9629 4121.5644 13811.4885 9407.4866 13216.4816 6582.8044 6337.3499 6559.6969 4451.5227 10562.0028 94553902 poba Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 11745.7565 8324.6109 4213.0045 4942.1659 11201.6813 4891.4201 37002.3754 64338.6491 4778.3763 9874.5966 8169.9489 10019.4798 10019.4798 6733.4703 3118.9238 4606.1543 3884.1998 3927.3131 3944.7742 4923.0306 4738.7475 9220.0437 5155.9922 4790.6138 6526.3660 302407379 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 8533.3216 5579.7575 12296.8596 8529.1808 6652.5455 50787.3714 11540.2032 7087.5673 11111.9235 5239.2543 283310.5970 16848.3294 12421.4057 6470.2202 4661.9839 4661.9839 7847.2772 19260.2855 12255.9031 11447.8915 20031.1412 14715.2677 11149.3883 6401.0741 13915.3979 10229.9511 40928.1115 8866.0200 13792.5037 5529.3984 9144.1589 8513.8618 5689.2819 11945.5599 255105489 xylanase Carbon Cycling Carbon degradation Hemicellulose Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 10742.2248 23904.7733 14437.7212 31062.8741 4291.6482 3972.0539 4447.5193 9572.6882 9584.5557 3609.8952 844353.1577 5778.5404 12259.7365 2130.9603 2130.9603 8285.0478 7960.8250 7391.1417 4128.4517 7661.1046 6434.3825 2191.5214 5898.2614 9743.9915 2575.6830 15623.3302 7507.9588 17665.0445 2681.9154 6207.3978 7076.8206 3473.8852 170734622 mdld Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 15321.1766 6568.2691 11339.7471 14047.2894 8404.9080 9752.6926 6837.2032 6560.8101 9961.6562 163746.8233 12651.1757 223200.7055 13094.2766 17475.2481 8577.5269 10584.3762 10584.3762 8011.7852 84770.3344 12832.7169 11912.8288 14139.8863 38027.3698 4130.4691 6449.1865 14172.0305 92318.6189 44673.9870 6278.4480 10790.2363 5335.1812 8723.6196 10481.6905 19592.0322 9861.3986 16506216 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 7580.4393 6222.0401 7974.6977 8768.6862 9224.7262 5114.6086 34118.0385 6232.8299 6260.0855 75662.0543 5499.1658 6225.2956 4215.2741 4672.2683 4672.2683 3579.3208 9510.8259 5222.6002 6046.0886 10072.0608 3272.2095 3524.8707 7943.6357 11908.7146 10346.8585 8845.8062 10691.7549 2915.8845 8798.0760 5762.8474 5180.2012 21999.2692 327543193 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 126550.1389 18261.9036 16955.2341 12007.5800 11875.5446 17839.0822 32613.1816 14544.5510 23068.8665 104501.7885 19639.6995 734375.5388 48904.3413 74497.8697 33261.4989 100390.8016 100390.8016 13451.9985 35348.8582 25509.5650 22234.5880 28644.5669 30885.7702 15763.3793 18650.3415 20874.8336 30412.2529 55852.7594 31694.3370 32618.9268 17700.8605 31289.5721 31270.7265 18877.2182 23859.0628 189198678 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 23146.9418 18296.7354 17060.5477 10608.2391 14232.4141 13784.3521 11981.5366 17291.8432 20737.5463 18069.5043 13049.8643 380403.0336 23118.5961 20327.7759 43365.3455 19087.9471 19087.9471 12250.8384 45643.6611 51360.5917 20107.7373 34224.4584 11984.7464 10363.2433 14928.5627 18567.2155 12307.1047 25677.9506 18508.7075 55152.0064 10365.6663 14953.2598 12764.6626 20141.9195 17965.8294 402076887 tfth Organic Remediation Aromatics Chlorinated aromatics Gaeumannomyces graminis var. tritici R3-111a-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 15002.2919 20941.8001 4972.9534 14072.6972 5534.9221 7960.8425 22966.9311 7831.1816 3635.7392 6853.6220 9337.8255 5189.9430 5290.9891 5290.9891 4019.6084 9719.9498 7921.3139 12020.3930 7501.2603 7051.0075 4184.2034 3184.5280 9220.9269 5646.7239 14893.8224 8804.3743 8076.3314 8328.4871 5460.4324 17057.9569 5525.3652 8791.8932 148566822 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 5219.7149 4200.2005 6437.3400 2506.9214 2368.0172 3177.3887 4035.7390 2649.5598 148051.3593 5699.6417 5136.2296 1999.8964 1999.8964 3081.7459 8850.6075 6458.5523 7479.8150 8065.5502 6769.2330 2481.5784 3108.2591 8086.7767 2821.5845 12307.8592 3753.6556 8303.2188 2680.3703 4205.6824 4777.8457 2421.2472 7983.6897 316981042 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 171012.2069 60343.6684 120528.6363 376249.9599 142019.9909 238254.5934 99308.7245 178444.7285 107721.7581 117830.2172 134080.9846 132922.9534 4186584.6287 227768.9990 327824.4441 440840.3388 188960.6490 188960.6490 151241.2471 162042.9817 81960.8949 209079.7297 161423.4641 296867.9700 74649.2726 117312.8443 130204.7625 106907.3043 330119.8827 130232.0792 237892.5400 58696.7056 169961.5593 141549.9034 68513.4408 117572.6621 388585237 dehh109 Organic Remediation Chlorinated solvents NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 18067.9149 542882.1834 27145.3072 11757.7548 4489.1315 3908.4206 7482.9490 4182.9650 11333.9221 10347.4051 16886.6429 312481.4835 32783.6644 18767.0519 16629.7219 22894.9994 22894.9994 15154.6639 47274.6174 10513.5277 45215.4199 14432.6120 22231.7546 21733.3030 18185.4175 22111.1833 6648.6640 41734.6518 24390.3499 26567.9652 7931.1180 69900.9122 44883.8937 9276.7785 12964.8509 24984155 atza Organic Remediation Herbicides related compound NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 3780.1965 4067.0481 13051.4933 2457.9407 2507.3533 3128.4605 5455.6410 2676.6512 131970.9163 5731.0283 4556.8539 2468.3809 2468.3809 3780.6384 16130.5445 5902.8164 4224.7583 4456.2298 6531.1375 3921.6869 4322.9557 8358.7269 6359.9512 10071.4964 7817.1519 2968.4974 3170.6387 3605.3438 2458.4211 6557.7625 154245482 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 37853.1544 25205.8893 13710.7453 55062.6096 17004.9382 14586.5512 25352.4286 35130.8834 23666.6612 46824.4552 39270.6677 549736.1729 25558.1618 49709.8911 34978.9646 23676.0884 23676.0884 16024.8960 75437.3100 19320.2384 37269.8491 39257.7234 22875.7651 10669.6498 42057.3819 34062.7504 45403.7365 120794.3791 35828.2450 45805.1191 16971.9718 38757.6600 25551.5359 22757.1389 28737.4048 86605259 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 25120.6853 62364.1973 82976.4135 7288.1716 5077.0235 10691.6641 22534.0910 14805.6742 31468.6604 10512.3143 693657.3089 194402.4154 42096.9304 26680.8024 27356.6804 27356.6804 24774.7984 26396.5914 26140.2235 25136.9281 49329.7090 21985.5755 23216.5083 18271.7816 39520.6181 17275.6707 50859.2759 18485.1280 32504.5951 18148.2525 24395.8670 20135.8557 26631.1297 23801.9244 66801977 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 368308.0278 140398.3101 42152.7569 52379.5377 28890.5605 69150.4238 133861.6007 85509.9837 83210.8856 74852.7833 121775.9522 3677300.5844 253876.5754 79836.2513 153374.4517 176860.5086 176860.5086 83313.1595 165886.4656 68917.5790 223441.9381 275094.1308 214174.1575 86740.1206 182214.1873 101776.9686 159192.7149 309262.5461 173159.9385 140982.4272 63546.7275 139791.4516 118933.7747 144932.4442 139681.5373 160917619 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16778.3831 6865.9818 24512.1309 17061.9983 7639.8002 9222.5330 5211.8063 8288.6140 18444.9768 145615.9596 155986.8424 12996.4871 12359.8297 4970.4561 6389.1290 6389.1290 5786.8799 18828.0952 15248.5864 19751.3513 11128.6423 13373.5673 6384.2947 5298.3589 13496.1562 6408.4655 18751.8758 9049.7914 20032.3213 9116.5991 6948.9942 10209.6115 5187.7850 14207.4450 126718810 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8293.3908 9261.6122 9073.9136 4649.2211 4896.7438 3586.0495 9900.1934 8614.0885 4595.9257 203510.6184 9438.8279 7601.6146 4147.9096 4147.9096 7017.9808 11472.1563 11777.6316 155359.1638 9145.0449 8017.1759 4379.0760 5408.9116 10755.1192 7484.5800 26376.1802 12248.3069 11153.3389 5779.3834 6229.6232 9468.9022 3927.2520 15380.1725 149920229 linb Organic Remediation Pesticides related compound NA Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 5823.9203 6346.9627 7343.3994 31803.8621 5189.1242 2863.3812 5940.8754 8269.4365 6347.7377 4400.9042 4063.8434 89014.6543 6027.2741 9651.3498 11067.6938 7732.1879 7732.1879 5813.3859 11215.4836 6578.1331 8708.8166 5438.7768 2484.4514 7910.0806 11523.6722 3757.9142 16552.4771 20559.4132 12889.5908 6000.5524 5133.7169 5261.5323 5320.9598 311744352 mer Metal Homeostasis Mercury Detoxification Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 8954.4459 53588.5037 20561.5939 31285.2331 2963.4684 16889.7542 6867.0733 9323.4625 9237.3444 8477.5673 147658.2201 4606.0444 9990.2971 9046.2495 5621.5736 5621.5736 92498.3030 14699.0913 9616.2699 44963.2059 7073.4398 30399.8702 5716.9237 5016.2061 16089.0909 5744.2784 17226.7929 10106.3959 8607.7910 3806.1765 6897.5078 6358.1602 4671.4989 10102.6746 226354803 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 54636.3535 647421.2762 13661.7576 3385.4384 10292.9358 7923.1852 3123.2979 11031.3815 4258.6342 64584.2176 7959.0902 47463.0105 2662.3902 35452.8134 20282.6398 18868.3934 42301.9580 358639812 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 4730.3716 236695.9788 10760.1312 6582.0651 4378.1367 2478.2459 3964.5058 10303.7850 10073.6820 148751.0977 5454.8208 8951.3978 6003.6270 4604.4492 4604.4492 3388.9997 9425.5779 6793.8819 9874.2813 11855.1348 2890.3479 6597.1343 8177.5822 3509.4499 27946.1872 9717.8674 11746.4857 5298.3974 4218.7131 3752.1546 4021.2459 6001.1499 410944353 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gluconobacter frateurii NBRC 101659 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter frateurii; 5411.7607 8282.5565 8323.3850 25073.3158 6620.9924 3661.8391 14050.7883 4469.7224 6953.1446 8987.2471 3080.7652 6253.5925 8631.7182 6897.7058 4924.7565 4924.7565 5235.1022 22974.3798 12970.0617 3600.9883 5630.0901 14006.0120 3279.5807 5641.3827 10170.6424 6463.1190 13110.8171 5915.0864 10627.1300 4061.8220 5801.1479 5468.8050 3669.6677 10658.6055 323134630 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 18543.5787 8127.1170 13953.0418 13297.1772 2344.7092 2344.7092 4404.8078 5117.0043 8467.2228 3272.1454 119958186 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 14121.5336 26350.3293 6666.2712 10247.5318 5441.5248 2841.7953 3031.4122 8726.8008 7983.6601 116348.2130 8553.2264 7559.7451 8101.0544 8101.0544 75495.2805 14181.9060 11739.4956 6645.9933 7205.8778 6615.0572 4877.5193 6223.4082 10183.2492 3990.8283 10885.5571 11385.0796 3339.6318 5671.6819 6515.7864 39126.0413 24791.5954 315657014 narg Nitrogen Denitrification NA Mobiluncus curtisii subsp. holmesii ATCC 35242 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 26971.3924 2678.2572 2553.0062 6213.1173 5288.3056 4739.7070 185971.0842 8544.0228 16035.6523 14004.1268 10872.7883 10872.7883 3104.4514 15787.4787 8395.0003 12270.5889 27595.3498 2578.8688 9333.5086 2559.4226 18617.3738 7980.9972 7963.4429 3748.9325 6342.6073 5428.6821 3831.5656 5245.2532 108460873 endochitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 33159.6722 16048.7319 18737.4079 18544.6047 24791.5490 5029.0736 11849.5572 8788.9235 19086.6583 26411.4368 20768.2020 26777.6763 456611.8195 19889.1747 56993.8121 20535.7156 14468.7958 14468.7958 14907.2048 50797.4377 20479.0723 34449.4159 63100.3376 76653.2972 43468.3887 22911.4556 20011.9338 18521.5240 47597.1298 22971.2463 44560.9698 12872.4822 37478.9077 32989.9651 29063.4503 67916.5813 92394351 tktA Carbon Cycling Carbon fixation Calvin cycle Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 52487.3541 5259.1135 22403.2029 116062461 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 25649.9448 23181.3156 22600.9525 76555.7880 5322.8335 5142.8918 3852.4975 5036.4091 3910.7277 10491.8138 6738.1497 6738.1497 21651.8902 3876.4693 5447.5496 7998.2973 3730.4515 5947.3494 5761.0666 11027.2489 12333.3730 12654.4684 9020.2878 5711.9427 9363.9801 6808.4789 11839.2323 14321.3930 192293040 dehh109 Organic Remediation Chlorinated solvents NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 19848.7877 39803.3075 36507.1128 33807.2824 28826.0169 27892.8535 71955.4111 29362.8667 27460.5960 434674.8191 14418.0211 26342.7515 13199.2291 27069.0422 27069.0422 14008.6909 55184.8131 34083.4780 19366.8187 31804.9125 51214.6716 16687.3928 65776.6217 14692.4615 24419.2311 78284.1484 42920.3198 28473.6141 18854.4371 27323.8971 34173.4195 25803.0633 35969.3195 325678919 nifh Nitrogen Nitrogen fixation NA Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 3925.3473 1890.6184 5462.4371 20246.3147 2557.8666 5277.5164 146350520 exoglucanase Carbon Cycling Carbon degradation Cellulose Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 12100.2821 7573.1851 4210.1640 7686.8222 154570.2336 6820.1193 2594.3073 15090.3551 23267.9098 8402.0693 165524.5616 9851.0167 12063.4562 28166.4908 11716.6276 11716.6276 8354.1287 17058.6638 12647.0397 25698.6286 134695.9444 16538.6593 18965.7507 58988.2320 14754.9446 7328.1155 26126.5238 15938.3738 60978.3389 4682.9978 7274.1859 10930.1790 6876.3411 10137.2407 158110579 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 172802.8316 96364.7898 87960.9574 22636.1725 13611.7504 89527.9678 81921.9784 61963.9378 47608.4087 50907.7312 71492.9692 487434.2621 31362.0274 43261.1010 134556.3761 77046.4590 77046.4590 57833.9963 64449.9226 22710.0223 81829.5321 121316.2736 55451.6510 56105.4599 57381.5075 41651.4991 91235.7365 78294.8662 91492.3484 87740.4882 51883.7360 55373.7450 94841.4297 100588.1166 111660.4272 288919426 limeh Carbon Cycling Carbon degradation Terpenes Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 6878.4734 3655.0188 4966.0786 10940.1446 5613.5853 4890.3023 11686.1350 201509.2460 4361.3544 22186.7568 29688.5394 17285.3729 17285.3729 3326.6416 13267.1000 5606.2672 14246.6013 23699.3072 4049.7016 3766.2989 8918.9184 8108.9589 4833.8669 29683.9490 13369.5028 15772.6809 7449.5638 18562.1289 8699.6644 5494.1160 13315.6893 319755292 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 72567.5174 35270.0015 21457.4044 43772.8536 10586.1395 51325.8131 58899.1485 159835.0595 29818.7138 86469.0186 52682.7880 591116.4180 56616.0353 54713.2690 99368.0881 49681.2057 49681.2057 92478.8938 77074.5594 35364.1721 38697.0637 71616.5026 77248.0448 77147.3781 52468.4596 99334.0956 84223.6271 308452.0387 188184.5209 57812.7677 22518.9540 56576.2225 104444.1660 211343.3205 161152.3707 82568646 badh Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6502.1857 5768.6862 8128.8324 4989.1789 4313.6138 2821.6640 4761.1244 5858.3894 3231.7617 101413.6866 7190.5265 7588.0621 2493.9448 2493.9448 5515.2494 10787.6653 6311.5812 12884.8263 4853.0646 8057.0931 3458.7638 3756.6814 8244.9517 3628.8178 13896.2557 5293.6233 9759.0094 4451.1084 4698.7728 5222.4340 4360.6039 12212.8112 197333185 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8909.3708 64306.3719 8455.0010 14054.0138 5297.3931 7477.5264 5810.2244 3938.8338 5506.2548 8064.4232 5416.6839 110636.4738 6639.3599 21008.8152 12924.5009 6224.0921 6224.0921 5591.2361 13095.1075 6646.1836 8812.3516 7333.1825 11167.4608 4227.1901 9474.9694 13181.2457 3784.9778 14118.9147 9491.2905 12624.7601 4309.2104 7358.0883 13015.7107 5594.5053 8811.7284 217978571 cysJ Sulfur Reduction NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 5343.6524 5320.8112 14750.2967 26336.8612 17895.3936 6692.7230 10802.2145 6352.1659 3840.6517 6973.6947 6220.3100 89159.9386 7750.0439 9787.0405 26012.9311 7973.4174 7973.4174 4751.7282 15282.8905 9431.5852 6716.9209 10174.3010 5200.9849 6226.1356 9132.9415 20256.3912 17949.6522 40450.7897 8381.9102 15728.5271 15085.3571 14018.8098 7158.7840 6925.5058 24429.5157 342806713 pula Carbon Cycling Carbon degradation Starch Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8088.2542 5640.6360 10912.7301 14199.1744 3695.5958 7255.6972 9186.3766 26912.3964 4524.3239 711480.6999 12208.2162 12387.0749 10424.6885 6474.0782 6474.0782 5180.7707 12756.6245 8497.3946 5941.8040 47605.9821 6421.7547 6908.8015 4392.2782 8806.0469 11798.0878 20474.0794 16572.0882 24749.5621 3656.6251 7012.7804 9456.0178 6435.5698 8751.5460 55724922 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 490994.9979 18078.2552 11135.7339 4632.5140 4191.5775 18568.2655 4927.1318 9546.8289 6059.7597 81985.3369 4871.4005 52653.0005 2484.3916 2484.3916 4302.5861 57045.0069 6083.5348 110181.2823 7710.8199 7491.9886 6601.5268 8549.1610 10041.7493 6205.5212 22165.6948 5544.3908 9008.2900 8402.8696 9616.7321 20179.7015 3739.6613 7661.3505 106889315 amyA Carbon Cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6507.0585 20691.5316 17615.8040 14074.6943 4162.5931 7413.7203 2144.9716 6138.0410 7064.9225 4452.5848 159066.1271 7159.9247 6440.1088 6240.7607 4072.1663 4072.1663 4636.4801 12757.3058 12217.7241 5863.9297 11179.1483 18061.3612 4074.5010 4330.0706 10427.4126 8509.0889 15184.7307 15862.5056 18765.4819 4709.4078 6211.6684 6014.7503 4095.9830 9613.0384 297150832 amyA Carbon Cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 10472.9830 11199.5050 7753.5698 12918.0688 4967.8693 8098.5931 9002.8448 10015.6111 4951.4304 394187.5829 11670.3395 11224.7466 12922.9618 7482.8443 7482.8443 7434.5663 16534.2861 9530.6946 22316.0040 13703.9561 16572.3705 7734.6547 5578.6292 71973.6564 6908.8791 6544.1254 6714.0427 15353.1246 6071.6580 7694.3022 9874.4072 6539.2771 458289.0092 198262961 arsc Metal Homeostasis Arsenic Detoxification gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 26969.5868 5729.0642 11324.0473 5958.7824 11659.0299 8807.3828 6860.5681 3963.0434 82809.6662 7316.6856 8747.8115 6460.2704 6186.8710 6186.8710 3640.0928 12158.2614 10705.4626 4640.2475 6125.5873 7004.3206 5684.1045 3775.1928 16308.3160 3346.1858 21546.3332 11196.4313 11214.8229 4823.8784 5407.9853 6110.2772 5201.7249 323358481 xylanase Carbon Cycling Carbon degradation Hemicellulose Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 168721.7409 10926.8616 11408.0705 22383.9777 16442.7491 22140.9016 8406.9045 2406.7066 8959.0717 9034.5122 7772.8046 197420.3874 8926.2010 42510.0839 27370.9312 6166.9663 6166.9663 4946.6657 15990.7239 10728.5987 5788.7429 9010.4352 6712.0138 4388.3332 24120.5203 27111.8391 5595.0811 22283.6701 15199.2232 15168.5096 8996.2274 8759.9884 31911.6795 4200.9194 13983.0450 327331446 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Propionibacterium acnes HL096PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 21198.6074 20778.7057 77774.5392 31312.0864 20090.0509 15806.7160 24933.5428 16206.2370 10403.8635 36359.4915 51234.5736 454283.8336 77627.9060 28759.8443 259768.0281 36436.4637 36436.4637 56197.8868 56359.0902 16754.0243 106833.7881 63515.6760 42431.7402 46059.9989 23245.6286 30225.4361 162464.4954 193280.0769 17848.1866 47955.5571 45965.5915 95097.1345 63079.1338 13173.2211 20844.8521 77461684 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 16287.4983 17597.2522 12799.5758 16920.7481 11352.8068 21522.9275 7741.3385 12165.8255 17748.2286 11267.8032 292220.8105 12379.6651 17647.8036 13465.4910 8834.6445 8834.6445 8927.0699 23702.3709 14468.8830 13192.8765 60425.0430 14358.9406 7327.0340 8871.9191 15523.6934 6162.8300 26962.2027 14312.6250 16384.2823 8590.9817 9407.2930 21785.3266 6586.2777 18907.6982 344223873 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 29633.9336 9983.7882 14811.1674 8641.1722 10623.3206 16168.5180 23220.2299 17081.9288 24253.5544 20819.9585 368539.2148 17301.9916 22083.0306 22728.8437 18725.7862 18725.7862 12517.2762 40157.1095 18268.0878 23112.6803 27871.8808 19651.4265 13563.0750 10695.9773 28579.1318 14627.6183 27734.6789 11608.1510 18637.9770 14589.2052 22156.8752 23307.7907 10145.4912 19840.5574 399909656 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 80032.4736 15422.0690 25187.1758 79444.5825 160312.8623 256062.6935 24187.6913 50736.4839 119940.4192 31777.4565 70295.5210 94209.3396 947833.2149 260967.9367 87115.4726 42489.4492 43851.5299 43851.5299 27202.3349 72469.7410 34438.6053 22140.5764 160115.8943 37107.1362 19242.3735 27947.9497 174209.9608 114269.2690 143104.9033 129948.1830 93797.0108 55610.9459 58858.8388 128533.7301 32366.7163 1041242.1584 84694758 badk Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5727.9422 4052.4098 21119.1025 2472.0280 9466.7917 7349.6519 56699.2841 3412.6985 3627.0725 8672.8698 3374.5865 3374.5865 5903.3640 3379.0139 5399.8449 31652.8710 7273.7189 5840.3861 11091.8235 4331.4777 2892.7893 2826.7801 3423.2241 315415649 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 7782.8549 2645.4275 132482.2172 15176.2520 2242.2903 2242.2903 2991.1116 4902.0108 5844.9660 6326.6723 5874.6016 2148.6336 3670.4573 77460235 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 67524.0065 39018.9662 57423.3186 100453.5162 14150.3524 106235.2859 329803.5869 20669.2008 50136.4136 54604.0164 60752.1129 1340631.0180 108957.1778 78399.6771 88113.5800 55356.1763 55356.1763 42471.0110 177422.6076 63539.4575 46913.1251 91748.6385 95963.9829 28645.1207 36475.5180 57415.9051 35936.8668 108350.5236 64970.4898 170301.4249 45975.9552 45173.0374 53550.4573 24580.3065 70332.5637 378401756 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 74451.9865 12094.9099 56746.5603 42308.1394 249507.2582 38415.6504 58301.3945 50073.7352 39004.0078 69607.7422 47304.6214 43282.2973 837889.7829 319314.0728 90491.6934 47838.5864 44110.8546 44110.8546 26487.4068 58313.1038 34243.3723 52814.8657 46601.9499 108110.0424 24248.5030 30360.3275 198283.4551 54993.8926 181507.8740 112804.6465 58442.6957 50246.6034 53905.6431 38041.1760 46174.2286 56362.2217 289709233 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tuberculosis GM 1503 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 136059.0333 50025.7413 17144.0558 41905.0455 10717.1862 18186.4161 61342.2064 27291.7593 20717.9493 89661.7189 28654.4297 1020262.0063 85672.8092 70811.4713 98437.7269 33534.5267 33534.5267 35557.0621 36765.2356 31985.0891 36684.2105 168270.6380 67340.4747 25351.5732 40384.7447 29238.2521 34614.2343 94864.6817 31226.3082 746829.8035 16624.8606 23422.9908 30035.9155 51518.2563 58772.7362 54778405 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10824.7526 2953.5929 5230.5697 5120.9488 11149.6964 58508.8082 4211.1844 2313.4451 2313.4451 7527.6509 6519.2760 6006.8743 3756.9427 6071.9511 11644.6719 5223.2313 3651.7212 3218.0263 1988.7542 326793142 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 5061.0429 8249.8282 7136.9204 2565.0945 2748.8073 3502.5714 4911.1140 3814.5889 8678.2068 4929.2415 68521.0303 5173.5690 5104.9215 3975.2093 7879.4699 2520.0824 3220.4778 7681.5607 22392.5932 22877.9195 319993784 amyA Carbon Cycling Carbon degradation Starch Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 11447.0458 6619.0781 13313.1674 47024.3977 15035.4163 9680.9146 10564.6251 5810.8871 10867.0740 22683.9973 7780.4420 312859.0313 15964.8375 19532.4324 20723.8045 18880.9764 18880.9764 10742.1076 21749.5350 19925.8932 8328.9534 14312.0041 12256.0870 4654.5173 10281.3528 27918.2729 7577.4514 33929.9553 19002.5606 22243.9914 8646.4978 10311.5208 13734.9210 6538.3062 13217.7302 162283914 amyA Carbon Cycling Carbon degradation Starch Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 9084.8719 26487.7324 2671.9457 3750.0776 5311.9129 4143.9234 2884.0676 8066.2232 5028.8233 2749.6265 11213.4960 4254.5400 4449.8669 4650.6717 2621.8173 3687.1528 5664.4729 11428.7491 3806.7654 5285.7607 2201.0365 4173.9488 10554.3011 9288.3913 5496.9379 258576755 cellobiase Carbon Cycling Carbon degradation Cellulose Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 9627.2338 4680.4566 3342.7451 3021.4577 11886.3818 121367.8482 5042.7351 4590.7207 9192.5205 8742.1861 8742.1861 8145.8126 14072.7255 312802.6464 4357.1189 8487.6670 12092.2055 3954.9998 9130.6298 4473.8874 8764.9167 2736.7108 5061.8971 3329.2013 115365025 poba Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 281092.7013 18411.0342 55132.8597 66420.7476 84738.5218 43282.9916 123437.5617 102044.7191 66925.3423 60676.2969 125864.4286 76255.1136 2054602.9996 81289.0303 117454.7328 66597.3772 65761.5442 65761.5442 37989.7388 106251.7221 453940.5790 60728.1911 85764.4287 75598.2591 41192.1913 45917.6932 97914.8148 46032.2998 147069.4010 908451.8710 132531.4701 51084.6854 81679.1860 65250.8062 60247.1544 146546.5141 402821024 xylg Organic Remediation Aromatics Aromatic carboxylic acid alpha proteobacterium IMCC14465 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 65629.8418 12997.7584 15902.0707 481491.7186 19874.9361 12343.5410 20275.2155 163777.0695 10934.5957 18766.3529 16005.6243 16300.7997 389543.8270 16396.0740 28345.7994 45330.9344 20864.8689 20864.8689 28106.7687 21888.7091 10931.7659 28096.8998 25170.2770 34693.7191 41852.1968 14977.0238 116193.5474 113764.2302 25494.2829 92481.4977 29216.0603 9074.2532 10721.6961 12014.3944 98356.0781 35442.3110 187478650 FBPase Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 212057.4817 6015.7686 3777.9731 6203.6522 212686596 ppk Phosphorus Polyphosphate synthesis NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 23075.4651 20735.4896 4913.1853 5562.8611 7375.2538 6798.4907 7329.9586 316852.1401 5926.0099 21312.7970 9708.1423 7952.0331 7952.0331 3677.5997 8964.1322 13764.5869 15594.4663 12684.0489 10709.0479 4328.2708 5231.7317 8916.2526 10957.4774 37025.0190 23343.5611 13114.8789 5898.7653 4150.1666 6244.6141 5606.9043 15573.0841 291551344 amyA Carbon Cycling Carbon degradation Starch Ruminococcus torques L2-14 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 4587.3228 6245.3739 6881.0842 4059.5530 2499.7689 6059.3925 6590.3558 4628.9465 205299.0749 8021.4467 6958.4963 9217.2490 2653.6686 2653.6686 4968.1891 13889.9324 6257.9752 5610.7629 9244.6746 14004.7488 4495.4416 3443.4973 7386.4135 4138.0441 17025.4212 10295.7133 3001.6405 4250.7227 5655.3475 4620.2475 11181.2557 62896436 metc Metal Homeostasis Mercury Detoxification Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 11038.0950 114399.5811 24532.2578 12592.2573 4767.9306 160119.9943 2602.8852 7033.6642 7184.5244 3497.3488 133422.8362 8256.8967 55410.3045 4024.8040 3471.5641 3471.5641 6874.0048 11219.7246 8027.8366 7840.1809 6903.8663 9220.3594 5101.8161 5447.1732 13794.0514 4937.1788 19444.6509 9032.5315 13559.8582 11350.3568 5360.2495 7390.9973 6114.7664 12082.0139 146404228 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6268.4657 9271.6641 8183.5453 2819.7287 2055.5625 6069.4901 7488.8700 4825.1790 150345.5849 7473.6249 5241.9219 3367.7861 3367.7861 7103.3068 11726.6804 10307.7038 5208.8201 5439.5724 5730.5838 4174.7353 5793.9835 14963.9227 6374.2127 18291.5388 7881.2385 13206.4739 60346.8317 6895.2012 9346.9039 2722.6393 7050.2714 197625046 alkh Organic Remediation Other Hydrocarbons NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 10439.7058 20432.6773 2671.6703 4219.0491 16501.1538 23088.0090 106739.6029 4089.2971 6653.6255 4115.7304 6163.5538 6374.9325 3940.8391 8428.4831 8689.5767 12990.9010 7193.7254 3360.1187 11160.7190 7169.9979 338171761 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 22423.0830 11361.6302 7027.8798 5589.3837 9229.1232 7083.8074 28286.1499 8273.3833 7427.4085 5851.5429 111934.6006 16228.9784 19122.6400 4076.2014 6688.1441 6688.1441 2956.5648 13641.4772 6902.9601 13019.0425 6879.5371 4541.8726 5291.3241 13624.5373 9552.5330 14446.3396 10976.9797 9609.0133 13560.3173 6925.0276 7211.9297 7295.4875 7446.1606 71736846 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 6186.8358 5664.9637 5884.1121 4196.4169 2325.2279 4728.3003 6487.8655 4710.5031 92719.7771 6335.2286 6138.0491 13740.5594 13740.5594 4551.0151 12380.4788 5260.6994 7497.7025 8195.8244 12555.1599 5552.2630 3168.2015 8895.8882 2769.7693 14773.7215 7488.7609 4589.8430 4339.7376 4995.2705 3432.4092 8134.5207 14027653 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 104608.5195 35496.2285 197415.6990 19290.4371 6203.9573 41320.2439 44738.5578 103568.5989 74045.6352 185303.9579 62099.0564 798839.7141 43138.6782 52722.0135 96571.0997 59853.8828 59853.8828 60224.6480 152603.0523 47184.6236 140304.2586 136425.1164 132562.8131 88708.7294 79748.0400 54559.5538 51249.2241 133083.5871 97428.6571 63211.6968 27821.6295 56955.4878 86876.1454 63763.5995 55254.8119 99038859 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 13586.0405 7621.2344 14112.1004 21604.6366 8535.3106 30772.4093 19835.3312 5474.4602 32365.9564 16911.8742 14228.6515 1252633.0391 14178.6912 35958.0531 10623.6230 9152.5697 9152.5697 10537.2340 24612.8130 19794.8092 12022.9213 64195.4248 24828.6160 6083.9037 20973.0914 23683.2853 9708.5810 41297.3041 53023.4298 21725.3573 21949.4710 33201.0677 91100.7418 7568.7273 15592.9934 296426141 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 26273.4324 25889.9659 29072.7476 23931.8266 21059.0783 8673.0308 38792.8665 27128.4981 41170.1672 21196.9491 23022.2306 14653.3640 445918.2621 66865.5881 28680.6225 20390.3875 18620.5838 18620.5838 30433.6468 46321.9166 22838.3693 16627.5514 25836.1189 40698.4457 9686.4390 12741.2368 31304.0774 27080.3726 76120.7070 30138.3949 31774.3589 16967.3058 25576.9527 18249.2920 17603.2936 29322.4199 322379456 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter suis HS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter suis; 7558.9954 5445.7164 25372.6091 2705.2742 2825.9927 3760.3801 7211.3466 3382.9373 4503.2451 4329.2063 2879.2473 18029.1558 5751.1113 18738.8226 7565.8127 11330.3007 2771.4160 3037.0732 7040.9812 2618.6537 10484.3968 7265.6485 10995.7900 2963.7891 5574.2331 9754.7707 5722.7395 269099338 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8384.8410 4654.5459 9877.4405 4426.6526 3338.6031 2592.6990 3984.7961 3858.6122 5991.5804 74776.3236 14028.3087 4844.3755 3882.9015 3882.9015 2716.6224 8124.8254 3824.3563 11331.5328 4980.2664 2138.6676 5675.2940 2371.0485 9202.7913 5459.1546 7362.2748 2137.3435 7201.6334 3690.8047 4125.7313 73681.1111 116694552 chna Organic Remediation Other Hydrocarbons NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4314.1221 3540.2560 2801.4207 4319.4254 5281.7755 3725.0747 66487.1502 5065.6502 6568.6362 9266.3412 3496.3901 3496.3901 3257.5329 8110.5105 4480.9995 8658.5902 4798.0591 9349.2335 2939.0427 3275.6407 6673.0889 3912.3811 14568.7429 3829.4767 6381.8075 3806.8876 3725.8939 5686.1918 2574.8404 7564.0657 361130345 nahf Organic Remediation Aromatics Polycyclic aromatics Glarea lozoyensis 74030 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Helotiaceae;genus:Glarea;species:Glarea lozoyensis; 9893.6920 8161.2508 6513.7493 28639.7939 6025.8770 2522.6564 13859.1269 80103.0158 16713.9538 139985.2891 55882.0186 15767.7950 11843.0062 14321.8837 14321.8837 4638.0332 383678.0449 9285.9779 12084.1758 15098.6395 13551.7209 8019.4785 17071.4694 26630.9209 11816.2534 25621.5767 10977.7781 21969.7994 2987.4474 15661.3358 14669.7754 4227.1457 9469.7071 339514543 amyA Carbon Cycling Carbon degradation Starch Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 15853.2735 151900.1071 4435.5817 4814.6886 16924.1937 10151.5112 9070.8824 17043.7870 16052.2982 12448.9109 205046.8033 13105.4070 9517.4656 19726.4167 12219.8911 12219.8911 9400.5639 20189.1538 15084.5423 24123.9536 13543.0636 10703.9408 18697.4090 13064.0024 22872.4446 11449.0814 32070.8576 7283.1765 61772.3113 7718.9795 11622.6563 12558.2449 8722.3709 22430.2561 12054950 lmo Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6972.2893 3180.6453 15216.1923 6894.8130 2593.7352 9395.1474 338741684 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 16242.2420 7503.8201 12546.3045 50121.1333 6582.3406 4113.4768 19120.3057 9087.5953 13115.5156 135913.3255 13071.8904 14997.9819 27901.5201 13292.5897 13292.5897 3666.5536 15063.6817 8584.9929 7658.1078 67684.2137 18129.8031 6574.3102 5941.6033 21716.1966 5685.5024 24306.3368 17461.6748 20599.2018 5412.7220 121561.6784 21861.9446 3793.2222 7684.5773 90104553 ben_bcla virulence NA NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5906.7744 8694.4783 2743.1483 4326.7472 13726.0594 8356.8559 108986.6284 4169.5939 4454.1659 4368.3002 4368.3002 3703.5575 6701.2585 6450.9551 4274.3819 7113.9614 5630.9860 63791.0018 4456.5799 8338.5236 2493.8721 12085.2630 5993.4748 9273.7162 3266.5590 3755.4117 3055.5558 5725.4087 5607.2574 6002404 mmox Carbon Cycling Methane Methane oxidation Methylomonas sp. KSWIII superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 6609.1912 38020.7660 20497.9419 8803.5783 7607.0264 8072.2586 5526.9613 8521.8488 26737.9754 8861.9176 147906.2198 10316.9979 11046.9927 14689.5176 7840.7555 7840.7555 5435.0634 12093.6478 8521.9752 15906.7087 7750.0032 7825.5920 4142.4352 5245.6907 16063.8756 17278.6833 18405.5103 7273.7239 8558.1125 4925.8024 7030.7078 8406.5500 8844.2441 11535.3986 157921071 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 8629.0959 7435.5736 9733.2959 3932.1553 15672.7443 4491.0861 4055.2526 7151.9153 4476.2140 487384.0491 7901.8940 22583.6060 109683.0100 44771.0599 44771.0599 4215.5729 13736.3870 7360.3571 7997.5547 7424.2703 4667.8358 6180.7928 4523.0634 7819.6100 2789.8842 12677.5181 4643.2866 9086.3660 4993.3472 5297.4294 5305.6686 3925.9634 8817.9474 388528078 ppx Phosphorus Polyphosphate degradation NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 58997.5136 10255.1622 5599.7729 6208.1845 55210.5154 81385.6663 25444.9085 32513.8682 638554.0563 31530.8267 274711.4664 24132.6106 234949.4686 28154.5980 29700.0781 29700.0781 14714.3850 52473.0210 19937.6615 51800.3295 41952.2184 64204.6896 26338.5548 26093.9391 27194.7925 15062.3154 72675.1055 26868.4170 41634.7063 70883.4213 37630.4155 43238.1507 18028.7693 48862.6338 330985944 cmci Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. lachrymans str. M301315 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 11649.0925 11733.6729 14263.5375 6389.2802 98266.1139 5651.5519 14915.6405 5936.3905 192993.4606 11012.2910 9429.4084 14233.1374 4803.0323 4803.0323 3986.9533 15121.6760 17923.2918 11632.5660 8966.4655 17879.2196 5659.4537 7176.0738 20481.1068 57373.4153 22029.9117 9483.0081 19352.7279 6794.9498 9288.6131 27101.1201 14935.3480 36662.9267 377531076 ppk Phosphorus Polyphosphate synthesis NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 4982.5021 98547.5073 2612.0101 5716.4501 7822.7425 7967.2804 65086.8485 4517.1225 3767.7595 9814.1716 6474.6481 6474.6481 3222.9757 7719.1057 5974.8533 5943.9370 5303.8376 3736.5131 2278.4214 2787.5835 6036.5454 2947.3106 3025.6994 8021.0980 16767.4724 2066.3868 3533.0627 10341.8805 4342.9724 256833441 mannanase Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 3797.8885 4598.0721 4583.9201 101235.7032 3484.8604 5661.8235 5809.4975 7604.7960 4375.5932 5919.9895 3112.3214 7126.7980 2643.0995 4590.7389 5540.8352 2583.7198 2816.1394 2838.1629 6574.4215 320102603 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 56464.0947 19993.2255 43429.7339 14851.7063 22919.9568 1424546.6273 118577.2585 94088.5478 22885.3270 20054.2541 38374.8962 22919.7342 986379.2763 31793.7551 26334.0006 22957.1883 23646.2262 23646.2262 25380.3316 39341.5527 33513.0020 50218.2128 116617.6912 60198.6314 24362.2434 15642.5755 41277.3534 35352.2409 112144.4481 30002.0147 38872.2337 31252.5970 27756.0324 21965.1363 24314.0467 40334.0850 17935051 ppk Phosphorus Polyphosphate synthesis NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6591.7928 17473.0481 2104.8559 4478.9620 16257.0301 2614.0562 4106.5498 5496.1247 6441.3960 3164.4609 3164.4609 27652.2474 3528.1797 11121.7198 9877.3570 3605.5955 28850.3957 5896.3025 17419.4248 11120.9782 7784.4406 3030.1578 3386.6014 5648.8917 3508.5752 29824659 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 178237.9101 16172.2313 3947.0110 110363.0132 324319651 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 8615.8151 375142284 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 18099.1123 8848.8832 5754.8094 6924.2621 25315.7840 2737.8478 5429.3010 12389.5164 9156.6658 10488.7495 87501.1410 12535.9759 7923.8942 30569.6585 16867.1548 16867.1548 6066.1951 11498.1167 5214.1890 97033.7875 12979.3003 7018.6952 3517.3289 9758.8153 13717.5684 6074.2433 17857.8374 9269.8519 16094.9001 5357.3034 9612.7093 14714.6195 8583.7748 8948.0401 227420837 APS_AprB Sulfur adenylylsulfate reductase NA Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8953.1641 11650.9900 8783.7706 4482.5230 9909.2914 7645.7084 5032.0536 3208.5838 12789.0796 11182.8826 6849.8657 106838.2680 6267.1147 11676.4125 5291.8686 8009.5815 8009.5815 5820.5141 15271.7418 9920.7167 154476.4463 10323.8408 10616.9577 4073.1605 5146.5891 9741.9906 8099.3764 14900.3662 5025.9496 11729.0892 3454.5346 6970.2621 9983.4436 3879.1902 12673.8633 153884706 chnb Organic Remediation Other Hydrocarbons NA Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 33909.7869 6711.1965 18347.1382 6584.9435 6047.3227 5517.3042 16031.2052 263825.6202 16334.0909 4576.4025 23759.8481 12980.7412 12980.7412 5000.4449 8182.0590 5887.6203 9243.7173 7143.5419 5880.7551 7282.0669 2934.5997 3934.0036 8064.6333 3735.5339 7184.1331 8982.6202 5187.5237 25996.0788 88776507 ara Carbon Cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 5113.9901 8369.5358 2292.9150 3817.8325 4152.7860 3163.9793 75193.4368 2425.1866 2425.1866 9745.6970 4073.6561 2864.7599 2413.7455 12049.8407 5779.3764 5035.7331 2258.7757 3777.1993 7056.6955 261364740 cysJ Sulfur Reduction NA Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 8798.7065 19218.1889 13089.1758 6806.2892 14599.1414 4341.2686 5773.5123 13746.8220 21887.5015 125024.5172 7327.7082 25239.9792 11394.8306 7630.2750 7630.2750 3655.8497 17862.1255 9940.9038 7647.7702 6020.7244 2947.9515 6297.7888 12542.4305 7136.1161 13972.8812 8844.8120 18365.6114 4879.1747 11677.3992 5264.2021 2907.5816 6551.6373 254029956 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 99341.3997 154062.3828 18388.1574 14100.5050 9356.9539 12342.7678 12609.4170 21101.4189 23051.9784 16723.3326 263140.9249 12529.1051 19222.4130 12110.6494 12519.7008 12519.7008 86095.1116 33737.0525 16478.4623 32868.1038 25568.2890 39656.9284 7044.5438 13078.8159 24941.7829 17509.8145 31061.3300 19257.3254 27238.0932 20533.4169 11069.5340 15687.4920 15236.5545 28988.9793 46850264 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19404.5986 22052.4369 7035.9242 19117.9334 13940.4059 49483.0627 11224.5864 9966.3182 12886.0421 163376.4279 11188.0453 25668.4058 9311.0889 6858.0684 6858.0684 7174.1144 19559.5401 10222.4346 15230.3286 53597.0400 6427.8833 9481.1987 9024.0411 13724.9506 15269.5543 31357.8015 20181.0611 17809.2696 11599.6474 12164.9717 13010.1649 21234.4458 8340.8001 374568122 arsc Metal Homeostasis Arsenic Detoxification Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 12283.8767 5328.6672 8689.8828 4800.8395 7317.0170 6346.1342 4831.9489 17971.5865 7290.2154 110820.5719 4471.0258 6995.4597 11427.2344 13127.2331 13127.2331 22023.0664 13678.4653 4896.6965 5911.7601 6558.0919 6290.9108 22653.3246 4640.5393 7402.7580 11217.0374 25891.0644 4380.1837 12817.1649 6050.2817 4387.8012 11908.4062 3195.6523 7241.7781 39935130 nosz Nitrogen Denitrification NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 16243.4843 4702.7694 6734.2623 2436.3225 3753.0221 6078.4377 5778.8864 8367.5566 12342.5668 11303.5859 6354.0856 17736.0483 4126.3512 2717.6201 7477.5735 3686.5252 9030.1783 6822.8471 2636.0853 4570.4434 3322.3517 6053.3917 5381.6620 327310619 APS_AprB Sulfur adenylylsulfate reductase NA Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 16166.8186 192090.3979 5585.8763 5490.3200 3161.4131 12662.1891 34382.9317 3816.2453 1211633.1408 27142.8408 14405.3051 8745.2385 17555.0365 17555.0365 2745.3087 8147.1457 5751.8537 9076.2504 8158.9889 5648.0034 6545.9177 4390.3353 5561.8806 9760.1777 21703.5900 7518.1779 6750.6452 10563.3001 10760.1945 10689.1973 4751.4921 32256.0764 111150334 chnb Organic Remediation Other Hydrocarbons NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 115636.0012 149272.4901 62397.5694 84264.9373 97325.0763 44296.4524 101357.8392 238538.9481 43289.1565 117313.5725 92921.6899 67699.9062 2137999.1990 95622.8409 144015.6905 303046.8614 88880.2226 88880.2226 44824.2852 114250.9103 72912.7876 122084.8134 126162.1095 80793.9701 39081.8766 51186.5433 109272.2916 54535.4753 149317.0499 54218.5362 92881.9131 411445.8074 52690.4836 57711.3675 42182.0870 101494.6922 333892776 linb Organic Remediation Pesticides related compound NA Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 5777.9972 27559.7747 86272.8667 4336.9090 2809.8251 2809.8251 8766.0832 3913.5493 4573.3919 5085.2821 2248.9847 3314.6923 359775665 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 4431.9855 7634.1071 29490.1848 5352.6067 3477.9568 3084.5733 3677.0256 6084.9945 144421.1659 7002.9507 4459.6492 4565.1368 6212.2166 6212.2166 5037.8820 10328.6758 4392.5281 12292.1584 7469.7840 3411.8138 7966.3594 3312.6658 12843.5117 5592.1415 8071.0390 5126.6460 4423.3792 7047.3114 2888.3860 310790671 glx Carbon Cycling Carbon degradation Lignin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 5303.3511 4002.1924 2534.0002 3574.2946 15200.2945 9531.7750 96834.0418 3872.6380 6387.5177 5342.3707 5648.7964 4727.5899 3312.4260 7914.1121 2494.8344 10037.2291 5286.5772 6506.9065 1792.7553 4174.8337 5168.0580 2359.6579 325297468 amyA Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 16632.8307 7204.7286 19628.0991 11397.5628 18723.0926 11065.2861 11096.5839 11013.3129 12643.9214 7362.6931 303473.6943 17454.6943 14064.5446 10637.0012 6050.9897 6050.9897 8519.9205 24152.5959 15151.7705 12213.2499 19087.9094 27109.5760 7176.0742 9101.5128 19114.1289 8107.7147 36002.9857 9271.5076 19943.7863 8659.1461 10043.2731 12226.0603 9451.1308 71655.9526 157704432 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas sp. LB126 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 11262.6020 6525.8319 14398.0366 6130.3740 5086.8386 7067.9166 3210.8752 5667.8446 14713.9617 5879.0186 174347.6276 8141.3290 8824.0355 6587.8417 6587.8417 4966.5605 71959.1446 8636.2714 5396.0749 8021.9081 4720.3930 6245.1585 10160.3085 14200.1649 13513.7514 44063.5926 11212.1514 13165.6963 4996.7530 7861.0613 9473.0852 4769.9561 7319.0673 124039603 rd Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 4110.6733 3890.3477 5972.8107 2525.1441 5435.9601 10379.6472 8058.7287 78012.4864 5980.2179 5157.8043 2762.1846 2762.1846 3494.5769 11010.1173 6197.4496 3529.3140 5598.9631 3138.2708 3888.0752 7104.6523 3395.2329 16137.4454 6510.1230 8238.8742 2682.4728 3652.0145 4709.1663 2498.7047 19415.3882 375139334 terc Metal Homeostasis Tellurium Detoxification Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 11157.7574 6191.1950 9548.9850 4856.7616 5702.1414 10630.5401 18637.5683 4513.0649 8233.9467 5479.3321 156750.1677 21862.9651 7204.7737 13176.9889 6155.2448 6155.2448 4512.9606 13096.8794 8398.4612 27262.8057 12891.8891 678462.7461 5276.6349 5763.5392 8964.9344 7923.2696 18990.9958 11579.4359 72691.6475 8964.2766 6611.5684 6016.8543 5276.5577 6159.1685 2765433 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 25394.8094 12414.9617 5209.2302 37369.7000 28839.2772 9054.9873 95921.2989 65803.8178 18453.3038 267994.4908 24872.9727 49382.6114 21992.7232 20356.6828 20356.6828 23781.6627 62523.8315 20581.4033 29480.2052 30387.8076 112755.8918 22786.4146 14567.9461 23879.7060 18197.8411 27714.6730 19041.5843 32763.5818 15331.3844 26806.7683 20947.4544 51176.3340 56481.5436 227843357 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8476.3206 19232.2028 5155.5120 6999.3632 9306.4804 10062.5300 16339.5915 20223.1580 16297.1520 9217.3168 12119.9299 7252.3120 202226.3749 20971.0493 9894.0839 12137.3132 7784.2080 7784.2080 7914.5028 20375.7587 9041.2796 16516.6349 10675.8538 20471.4221 5561.6818 10102.8427 14871.5333 42642.7196 26127.9260 6088.1138 16553.8842 7387.5370 10074.7753 12854.5369 8835.5141 11748.1485 404442846 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 6512.0292 9776.2065 6676.0064 4132.2566 3790.0054 4680.4637 2997.5049 86825.2389 6583.3444 4822.0739 1973.3060 1973.3060 3451.6949 8221.1924 6593.8211 6144.1123 5511.6275 12506.5614 2924.0612 2759.9165 9201.9494 3313.9366 18497.3651 9703.1055 3868.7746 3876.9628 65349.4123 3914.8814 8786.0238 336392613 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 5080.9661 7789.8566 6629.8861 6297.9478 2351.0696 3921.9992 58006.7475 3417.0697 232908.6324 6897.0894 8003.2621 3960.7749 3960.7749 2843.1774 13845.0091 15869.5242 6861.5908 7207.3165 7395.5388 4124.4194 5617.2945 11772.7971 21506.5237 14345.5610 6630.1542 13513.8829 4314.2240 10284.5009 4483.9960 4131.0178 8855.6828 67522228 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 16334.5250 9970.5091 9733.0375 8136.9904 565585.8684 9343.2366 18476.4857 22374.4491 22079.6860 134448.8638 17025.3800 24763.1674 40526.7656 13437.2170 13437.2170 11968.5932 17635.1141 13585.3609 39352.0963 34760.1782 24747.9387 10381.0525 8008.0855 40210.1739 4672.6208 19463.7936 95506.7757 17039.3524 10024.0424 7639.1934 15586.9777 10653.3153 8719.5696 270511371 ben_bcla virulence NA NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 23581.6111 27992.7526 14297.6203 27801.5576 21546.4361 34428.1110 48353.2712 31877.1164 61912.4310 37875.8958 56921.8656 24564.6146 526332.0925 31072.4297 32235.6223 22103.5663 37799.8135 37799.8135 24483.7327 67488.0138 214639.9568 37654.9161 318197.2537 26484.4449 13762.5679 19059.8635 25250.7261 30106.4412 58784.9672 37201.2664 36962.1989 98249.4113 23178.5729 25002.7492 17887.1356 14418.3815 86136608 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6312.5998 3088.4989 3146.7011 3486.0871 77717.5993 6134.5261 5951.5656 3385.7987 4632.8372 8100.8912 17512.4394 6494.0914 2912.6599 2341.5967 4346.7023 270045207 chitinase Carbon Cycling Carbon degradation Chitin Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 135409.5344 131014.3361 156953.0236 81236.9911 53321.9009 50473.0387 141667.3445 151042.4782 134453.4220 132759.0681 329091.4644 160468.4582 5847718.3318 125764.0380 129234.7231 282992.9913 162149.4692 162149.4692 94719.9524 164208.6438 103599.1053 153685.5776 613166.7565 279642.4709 72811.9105 101561.2431 127522.7275 192277.4468 311147.7661 143046.3572 142488.7595 130372.5825 106652.7005 142252.4274 104106.6409 185342.0962 224817502 APS_AprB Sulfur adenylylsulfate reductase NA Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 37455.6493 46385.4823 30601.8781 15152.4903 7363.7796 51452.6959 14276.0373 16762.6078 18869.6213 23685.5802 16053.5432 15596.9988 29380.2814 66338.2825 25487.2901 20014.5309 20014.5309 14273.1749 67258.3148 26959.6956 33700.7703 50993.5808 31434.7031 24012.0644 36826.6125 43978.6727 19162.8710 57767.6164 51632.6652 42153.7375 16640.7963 26293.6652 22003.9316 19811.8939 52480.1557 377524102 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 12123.8421 6817.5612 2104.5095 2608.3909 3518.5897 5579.1167 6589.8934 3807.1592 3841.6057 5734.5329 3494.6331 3927.5954 5141.1502 3845.8489 5891.4723 239991132 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8995.5924 11683.4733 5592.1504 7407.6220 4761.1282 5402.4561 6266.2011 5162.2437 10281.9638 15739.3866 5345.9017 223132.8908 14627.6644 10120.1747 6347.6658 18551.3530 18551.3530 10468.0511 19264.6094 12210.0978 18479.5800 24530.9624 12213.7559 5312.0479 7779.8738 14825.6138 6631.5072 27116.2926 15837.5210 22310.8567 4879.2322 12555.8725 11481.9202 5651.3169 23670.3427 325965211 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 83185.4624 14039.0659 4363.1598 3576.4144 6157.7951 8675.8310 5606.7225 161392.4497 4132.2077 3501.2529 7914.0041 11545.8667 11545.8667 10562.8159 11998.1703 8307.5653 9246.2354 8502.6595 6635.0363 5440.5120 5917.3367 10214.0446 9337.5098 21653.0211 7633.9647 10856.3265 4231.3636 8320.1286 17889.6006 4023.7870 12998.1393 261371594 mannanase Carbon Cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 6637.5738 25392.7531 45667.7169 3386.7345 18743.5060 14872.3910 4878.5721 5624.2031 4995.9584 59376.6087 5785.9498 7022.2917 6546.1274 67371.6968 67371.6968 5005.0960 9618.3362 7776.0154 102109.9956 4731.7044 6257.7850 2349.5057 6346.5321 10254.2612 2180.2988 9539.9391 15593.6188 20990.5302 4554.6933 9746.6588 5725.7960 2079.2164 384147765 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 9345.2313 2067.8641 11144.0616 3578.4205 71397.3074 23012.8590 6701.2139 7466.7372 4810.4657 4499.2564 2243.5918 7934.4320 5105.0513 6678.3473 2923.8022 317395443 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11413.5413 5350.2182 12952.5430 11168.0644 11209.7654 15474.9825 9305.8222 10932.3646 9942.0852 5854.9725 296926.9318 18540.1189 9458.2545 9781.4691 6789.3470 6789.3470 6850.9945 19399.4293 12258.6392 13950.2399 16026.9702 18633.9991 5312.7792 5231.0784 19589.2724 6289.8600 23754.0961 9245.2961 15903.7237 7102.2326 9225.3405 8888.8394 6556.3284 15538.1187 353463634 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 132610.8135 18549.4653 19523.4764 66123.3610 9819.1951 70733.4018 25185.2585 36472.7844 48848.5006 42094.4181 39706.6964 643655.2093 221654.5068 33057.5027 68776.0590 30003.0943 30003.0943 24232.1154 144055.3475 25983.3714 286327.3634 52646.6663 34254.3145 19415.3859 30026.7962 40507.0618 36279.9881 99616.2571 18407.1324 72490.6299 18415.5175 22574.8082 46065.4112 18233.1082 312447.6302 46307932 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19581.1108 20920.4636 11485.6183 9588.0958 7182.3697 10873.7307 6425.4906 4914.6112 59056.0663 13842.6562 964931.8085 33772.1435 11971.3976 12504.1522 9775.9850 9775.9850 5202.9938 19878.1156 10532.4044 11539.1669 57946.5419 25379.2072 5034.3846 16133.5439 10284.6080 7538.3970 146981.3068 7663.5947 13765.5659 10501.7003 7877.4619 10195.4902 71359.4068 11078.3961 323365362 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 17051.9622 5965.1677 20637.8477 41317.0644 14030.5047 18237.8412 16930.5547 10660.7128 15303.8395 24377.5375 12251.4076 605637.9913 24372.3374 26086.8374 35320.1616 16541.3764 16541.3764 12877.0465 55859.8152 18879.8080 15509.9222 18072.1348 28524.2032 9330.1053 13439.0209 29258.2161 11145.7857 36376.6248 10934.7868 31368.2870 14109.1462 13281.6458 16252.6891 11302.6084 25311.9861 355670958 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 19898.0129 23546.8550 11282.1310 8074.4488 9564.0600 10443.5498 18083.5059 18596.5726 35176.3503 21077.9360 15853.7257 421825.8464 63172.4543 18538.0122 15351.4913 23225.1303 23225.1303 21812.2944 41074.3638 15987.9554 24772.6448 28672.7510 56759.7846 16061.3262 28302.2682 34101.6369 79504.5947 104240.8932 13932.5083 27406.0893 12871.4767 16309.2161 28897.7127 35772.7420 161324.2300 253688715 endoglucanase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 17648.4323 224654.2672 17547.3872 7008.3209 7987.5622 11729.8052 5711.4282 6827.3923 13983.7858 13364.1010 6778.0170 246671.8983 12256.5203 11146.5997 9195.6269 6518.0083 6518.0083 7962.4993 17465.4590 12368.7228 22120.1007 12533.3235 13422.4967 7860.4793 14625.4489 16848.7513 7350.2043 19447.5258 5338.0505 15298.2112 7001.2197 7203.4319 7964.4428 8019.9792 15297.4266 296265293 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 27876.7453 40232.8373 28233.2934 31132.7392 15509.7418 34220.2204 172738.6207 5907.0721 16129.0836 73310.1116 33001.9230 235658.5461 19303.5248 30348.5953 58362.9391 49810.1030 49810.1030 12939.3284 26759.2144 10454.5786 87469.1710 25479.7491 10712.3113 7945.2208 15983.9834 27658.8627 22100.2163 38633.3345 61604.6984 37552.8454 14247.1821 31041.8937 38959.9050 4376.6308 7652.5288 110632212 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 117443.7613 14211.2624 108191.2632 15871.8709 20568.3109 8858.0947 14177.7942 9344.2523 9495.5750 85738.2605 17492.4753 33883.9106 579306.6986 14864.5956 11869.4853 27981.9740 10188.2560 10188.2560 10616.1260 20370.6829 74660.0965 6577.8801 45342.2543 18457.8190 5647.3914 37953.8352 18035.7075 20434.7695 34132.6335 13700.9715 16051.2861 15837.5809 10991.6720 23887.1708 9094.7428 12136.9186 262275108 cysI Sulfur Other NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 5920.5882 2372.7032 3353.0948 4376.1571 4646.7472 32231.1166 4374.3752 3427.3372 6185.8120 5298.7566 7263.9041 2325.4417 2259.9637 7960.9172 3911.2548 7092.7244 2992.9643 2778.3521 5434.9787 257170613 amyA Carbon Cycling Carbon degradation Starch Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 20324.8567 27358.6434 3003.9319 21320.8212 3808.6953 3230.7883 62236.2734 4260.1167 3522.4727 7566.3077 4444.8294 4444.8294 80290.1953 11406.2496 4327.2658 3850.3505 8946.7654 3770.1394 7527.6717 1943.8650 2658.9930 4555.1579 162568489 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas arsenivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 10003.3794 11942.8209 5010.5179 34978.6123 5973.9289 6592.1844 5645.6411 7535.3352 5347.8498 273924.8776 24880.0723 9333.1298 14697.5126 20457.2248 20457.2248 7179.9433 21524.8590 8048.2451 5315.6208 10160.9001 7034.5458 3542.9472 7476.3228 16242.9713 17352.8186 28619.4084 11412.6777 12972.4025 5668.7647 6673.4473 6251.6989 8883.7297 4897.6622 403310159 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4401.0898 44035.0358 9456.7714 7836.8953 3963.3846 7781.6294 7151.1288 5340.5706 5835.6647 4080.1559 12263.2303 5000.7226 10893.3751 5514.3444 5514.3444 2911.1956 9709.8492 4767.8991 12845.8827 7739.3102 2823.5835 3581.1124 18203.4692 2813.5324 9987.5865 5625.4659 8319.5071 2717.3102 5448.4727 5320.9308 3191.2689 43559.9579 238020280 tehb Metal Homeostasis Tellurium Detoxification Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 18063.3612 107407.9413 13857.2342 8844.6027 4003.0842 11810.6696 14571.9756 13949.8404 14129.1935 6934.9597 3472.2279 19280.3867 10493.9069 9012.9712 9071.7779 9071.7779 3910.5835 18023.6392 9290.8182 6924.4549 42136.5172 12156.3207 9053.0435 13268.2940 10945.1060 73635.1926 62291.8363 13433.2437 4796.1278 9703.3045 16559.7881 9297.0507 8951.3179 86555361 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 17271.7505 7594.8255 17992.7707 6854.9117 4951.9058 5587.1955 6414.6750 5943.8116 9158.7849 3964.0005 110475.6028 8928.9435 11425.6433 13628.4506 5960.4955 5960.4955 3117.3122 12001.5267 15975.5914 6078.9088 6818.3655 3801.5760 7597.1041 3606.7213 9876.8197 4447.6616 33517.6895 5413.9506 12143.4816 5510.6063 10028.1328 9156.1857 4976.6371 7496.3593 357213254 amyA Carbon Cycling Carbon degradation Starch Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 23560.0108 9168.0443 10045.1154 7330.3883 8416.1750 5913.1659 7852.4673 9115.9513 8342.4075 274043.1474 34582.7351 8144.7056 8371.8011 4469.7714 4469.7714 8300.8671 16191.8133 11860.2166 9441.5854 16492.0546 19617.6415 5807.0223 8485.7430 11479.1266 5085.9741 24669.5962 4326.0114 10716.1004 5020.8848 7172.2890 10970.4350 7515.9415 13926.0274 311696225 ppk Phosphorus Polyphosphate synthesis NA Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 14208.7552 8859.7110 19882.7562 13248.7901 4749.8049 23492.8200 9762.6139 3923.8596 12552.7303 14702.5584 7358.1594 280583.9597 16504.1110 11382.8545 8809.9846 8648.8396 8648.8396 67607.3835 24382.4183 19146.6729 15960.0320 18387.1354 18842.0119 7590.7514 8133.7724 29633.9026 7046.3118 28080.7517 15327.4620 20940.4900 11126.3217 9503.5932 9215.0803 9345.8313 18263.0251 288934731 alginase Carbon Cycling Carbon degradation Alginate Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 7530.7448 9412.4885 6759.6996 14830.5301 4142.2643 7099.1691 10803.0681 3563.7956 131663.9141 8871.9844 7360.9467 5887.1963 4821.7211 4821.7211 5296.6374 15356.2389 12528.7244 10662.2472 7467.9687 9350.4009 4551.4614 5719.2464 10689.7017 7532.7334 15686.8162 11225.8739 11037.4643 8210.1443 5163.8391 9141.8917 7462.7640 12281.8017 365538610 amyA Carbon Cycling Carbon degradation Starch Vibrio ordalii ATCC 33509 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 36269.5054 5943.6231 4400.0276 5232.2920 59363.9640 4003.8149 5537.5717 5060.0565 3819.4180 4042.2495 4042.2495 2811.3205 8590.1501 5208.0115 3550.2280 6340.1354 4166.7869 2917.1447 2242.6544 14894.2372 13849.0868 5066.8933 5852.7268 6195.0582 4281.9156 5305.9501 9553.3878 5657.2499 118589811 cysI Sulfur Other NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 10809.6124 6189.0232 42351.1683 12008.2749 6530.5148 9393.4885 5498.1069 104698.2473 40941.3876 8151.8347 15434.2765 8643.7932 8643.7932 7192.4039 5708.3139 4008.8110 3967.1257 3446.2370 5736.8395 11301.0750 4035.8464 12706.4151 7476.4398 7502.4513 6029.3017 6141.0559 8067.5095 2987.0597 332377178 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4414.9715 15109.5365 7152.9296 13351.1879 17543.6863 3091.0413 3403.0806 8087.8487 8898.3733 116935.4977 8488.9385 8383.2324 7108.8660 5138.3348 5138.3348 3769.5806 10605.9626 9999.1514 13497.9119 5719.0868 2346.1376 3216.0153 10850.2361 9522.9260 17134.9469 11525.8941 11923.8995 7960.5092 5842.5722 4909.7959 4076.7960 6238.7465 206602317 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8924.2455 6806.8879 4750.3024 10451.9351 7127.2345 5090.1443 2990.9338 5718.8809 10409.5387 4311.7856 230622.1777 15485.8321 6847.4247 5311.7317 8259.4097 8259.4097 5252.0099 11986.7118 9153.1771 8610.3902 12347.0582 7870.3380 4602.5264 6942.2683 9979.4172 5577.7460 16936.6037 3719.2637 11236.7177 5086.8184 5705.3148 12978.9685 3328.4350 8462.1796 295695612 xylj Organic Remediation Aromatics BTEX and related aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 47845.7554 71778.7690 23550.0784 17051.8793 17794.8259 14338.3084 10041.3940 19630.0640 17506.8627 11513.1414 385963.4889 26939.2236 27049.2639 18264.0300 10798.1253 10798.1253 20203.5536 28566.3810 17680.2423 19345.3980 27734.7617 24323.7478 9689.9371 10644.2197 21212.5355 8210.4756 63227.7785 14764.1849 27759.1623 10030.7371 11951.2346 14350.2585 14189.6484 103775.2778 238869526 urec Nitrogen Ammonification NA Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 7510.1286 7212.4001 2960.1106 3348.2034 3187.5409 15046.4328 131264.9547 3511.3163 4559.1954 3064.1007 3064.1007 10055.2994 4675.4252 2525.1011 5699.5584 5531.3497 38327.0349 4009.8421 5775.3293 3264.0421 3300.6124 5147.1130 348169103 amyA Carbon Cycling Carbon degradation Starch Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 4101.7443 13469.0253 82496.5296 5421.8685 2404.4454 2404.4454 5147.2587 3724.7115 5363.9739 2921.9986 38427020 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 155854.0642 19848.5202 286195.8400 37686.8825 19439.2824 38617.0234 55754.9128 68403.3682 24168.8807 142620.2799 34107.4016 673131.1550 64602.9093 52527.5481 251101.5863 47469.7925 47469.7925 84042.8299 42010.6864 13741.6621 37287.0520 79354.2885 136540.5780 22258.7478 68793.4274 53530.1960 49209.2863 160905.5788 71795.0604 68153.4944 21647.6616 39802.2506 43310.4941 39630.3328 75439.9491 315416136 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 4690.4646 17076.7719 3472.5402 3966.3641 5115.3205 4073.5222 4292.2125 5501.3207 5501.3207 7241.8848 11722.8001 4783.6706 4849.7428 3605.6267 4727.1328 6696.3876 3676.3833 11073.7659 5114.5476 7370.9307 4998.1323 4025.4540 3956.9097 7904.0016 6986.8647 223932744 amyA Carbon Cycling Carbon degradation Starch Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 21944.2002 10720.7861 15527.4532 21760.9079 22079.3645 15435.2516 17717.6769 9704.3632 19363.2214 21474.5757 10183.1331 414824.1312 28097.6871 18713.4373 20020.3794 10929.8661 10929.8661 26146.8709 28537.5392 18825.3100 27710.2135 21633.7956 29507.5532 9610.6581 9975.2367 22379.3528 8834.1217 37752.0710 9169.1268 23856.8795 8843.6098 20338.8758 15940.4001 11632.9401 28409.4109 377533715 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 5857.9488 3669.8900 8108.0473 5627.8749 11150.3507 13969.8440 9622.5410 4964.6059 5802.1448 16186.3634 3144.8265 3279.2172 6988.0881 3073.5489 10896.4577 8837.7744 7638.2124 2934.5586 5350.0515 3946.1146 192764326 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5456.0356 383871.4023 4796.8540 6515.8610 125954.1846 4380.1061 238843.9622 9422.5213 17422.1570 13744.5920 5795.7643 8222.9101 8222.9101 13634.8739 3761.1016 3898.8661 2797.3265 34494.4492 6977.1251 5522.5786 22523.6397 11078.9070 18127.9351 5713.0454 18965.4102 7444.6693 8868.2957 5173.9877 189172330 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4763.3573 2578.6721 6069.3924 3785.6568 3585.8469 3585.8469 3157.5686 5843.2679 5126.1543 2604.6082 115388175 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 55913.2282 12416.7670 46564.5463 43712.6162 59566.7582 15614.1595 43541.4710 136493.0265 36139.3216 51705.2429 45564.6419 35750.8049 1237867.6569 236400.4121 61689.4090 57877.4520 32036.0524 32036.0524 33932.7668 74669.3983 39302.2215 50208.1924 192514.0389 104192.7868 34984.1679 28916.4297 54320.8277 35527.9865 314961.3803 46103.5039 72065.1721 36192.2543 48827.5301 43030.8240 37465.4448 885706.0917 170061235 cpna Organic Remediation Other Hydrocarbons NA Culex quinquefasciatus superkingdom:Eukaryota;kingdom:Metazoa;phylum:Arthropoda;class:Insecta;order:Diptera;family:Culicidae;genus:Culex; 12329.4659 6944.4445 20927.9567 18751.5578 3563.2742 4534.8761 6801.5184 4731.6890 136745.8471 10419.3795 7288.4429 6660.1870 3610.3948 3610.3948 3704.9003 11606.8147 11941.5228 6996.9619 8309.2516 8867.5228 2777.1660 5688.8067 6650.4001 13493.6585 7928.6258 13404.1837 7710.7563 10088.6903 84667063 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 85662.4161 26956.0528 7824.4660 13848.0798 12288.0565 8906.7193 43452.0211 109384.4998 11891.3051 12015.0252 39520.6175 206388.7388 23628.4871 25995.9409 16835.4858 36575.8889 36575.8889 13853.3190 40471.7762 13327.6406 11498.1066 35302.7749 14561.7841 17774.3120 28235.2605 19211.5599 49579.5497 33494.1365 67394.4053 32370.3622 18134.5105 26466.9165 67086.0948 20123.1594 60293.5809 371651090 nifh Nitrogen Nitrogen fixation NA Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 7966.5594 7074.1775 3898.2057 4271.5289 6097.4389 11124.3735 7416.1809 3522.6584 143274.5665 11928.0068 7612.3693 5462.1142 4100.3051 4100.3051 4498.6974 9745.6966 8799.6765 7294.9918 9016.6155 7911.6540 3478.8944 5017.3619 8852.8879 2910.1121 15281.4388 8923.9188 8808.6684 3671.0344 4092.2403 5668.6868 4045.0946 13852.0309 296027248 amyA Carbon Cycling Carbon degradation Starch Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 18880.5128 11315.1319 15723.5490 18452.8365 10636.5936 21951.1697 19095.5692 6776.0310 15116.5065 15224.8246 16618.3675 279767.4924 18534.6835 12348.2258 15950.1607 22320.4620 22320.4620 11273.9920 18893.9855 12517.0705 17599.9958 20310.5840 19996.7595 6211.5378 9344.3512 19913.0515 5936.7962 31389.1413 13446.1584 21643.6651 7621.4618 11229.2881 13699.4274 7377.1210 15606.7240 218244809 SoxC Sulfur Sulfur Oxidation NA Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 20630.3914 709285.6564 22285.5995 72756.1772 19602.7046 37128.6042 5435.7589 5989.0365 9736.4387 12828.2238 443676.7836 33022.5532 18148.7642 54911.5519 22101.7983 22101.7983 6964.7618 26115.0888 27032.8487 9306.1375 31954.3543 5155.5332 2927.4098 12485.7301 30439.8058 22154.7639 18681.9866 36401.4444 17643.4397 4113.4119 8033.8991 12024.8105 2909.9971 5518.4386 256396578 limeh Carbon Cycling Carbon degradation Terpenes Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 5323.7446 8654.2735 17609.5719 6528.6509 2892.9729 5387.3346 4369.9381 83526.3238 5491.8094 4347.1662 2210.9994 2210.9994 3180.4370 12167.0948 6609.5799 4195.7137 2356.7137 2959.7330 15015.5358 3546.5161 15467.0026 9623.5034 12852.1068 4571.8738 5125.1077 163664452 ppx Phosphorus Polyphosphate degradation NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 334262.9777 108613.2663 990177.9820 221920.7565 727973.3194 419306.6476 166535.2750 357760.5756 811051.9544 259467.8304 241241.5681 233662.4995 4715798.6048 275398.0069 457645.3511 911482.7852 291896.2699 291896.2699 245640.3397 379234.0945 154489.4612 239257.8294 741054.3764 997197.0301 186769.5268 354596.6651 290088.1195 222658.1255 600806.0894 263821.4272 473507.0983 172321.7991 199418.1433 262185.3085 164245.8796 434186.1257 356660537 cysJ Sulfur Reduction NA Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 13751.6555 37486.5910 33152.1560 79520.6842 82708.2242 6609.2580 7508.2108 2663.3147 6316.6500 11668.5975 8135.0819 134024.3978 9785.4525 9686.9398 8540.1904 6206.7761 6206.7761 5784.2289 13074.3886 11525.7807 13550.9819 10631.9234 12425.4924 5310.8919 4394.2578 8695.4231 7116.7401 18584.3139 9214.5127 13114.7955 5744.6965 7079.7432 9512.3359 4112.1439 10710.8387 164455294 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5411.5727 8221.1650 7462.9471 10270.2484 4502.9582 6364.6628 2842.0103 2755.5095 9069.1856 14773.7727 16950.0524 10900.8886 21497.1321 46860.8967 46860.8967 3932.7199 24540.0548 5449.0412 8674.0138 9780.5767 5352.7092 12984.2938 5783.2441 13456.9245 29751.6269 12903.1493 7068.7052 5854.3734 30213.8044 14043.2100 6267.6195 14774.8289 23325374 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 17111.4729 8811.5341 4955.6363 2251.4101 5915.8661 154499863 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 18130.1624 8672.4643 14765.1779 2423.1470 6506.3478 10991.4376 13017.5306 6267.9917 51903.0801 6802.5926 81514.7142 6243.4360 9712.5889 9712.5889 8944.4218 4551.2840 4718.7648 8410.2775 4338.6664 6773.0096 9605.1495 9161.5890 4040.8401 6453.6604 5564.0804 4551.3537 3846.2663 2615.8151 5123.9013 76058111 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16316.0074 19193.6260 302689.6429 18880.6474 10874.2938 6795.7782 13483.4537 17042.8626 9825.5332 75540.0193 20321.1912 18499.0999 369585.3228 20393.6456 21839.1105 16085.0708 9294.6764 9294.6764 10294.5697 27800.9165 21332.1280 20186.2465 24604.5297 32095.1239 23621.0636 10325.5052 21929.3916 12612.7389 47135.2209 21693.6393 24887.0191 11573.5428 13828.4924 16040.6810 11217.8052 21345.7635 260221958 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 5527.9524 8307.1606 4032.2401 7762.3305 10934.4938 5591.6641 123008.4084 5073.7929 2645.4648 2645.4648 36539.4161 8538.8560 9504.1110 9317.1542 4802.9548 5631.8404 7989.1794 10441.1372 14066.2592 6039.8682 14035.8307 2574.5437 5659.7921 12034.4308 8349.0055 337751628 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 47388.3106 16873.8729 9148.2321 289967.1535 16452.6900 11399.5326 31086.3784 6681.9078 12644.0829 11523.1511 13378.0732 1049489.2879 17643.1923 17267.8950 36677.2215 30567.4302 30567.4302 12158.2074 25522.6775 22465.9114 28481.0332 52292.9240 27540.7675 18047.1922 22738.3790 23352.2846 8334.7052 64876.0054 20441.0412 21047.3582 9357.9057 13183.4918 81222.1505 11882.2240 9675.2249 84388649 urec Nitrogen Ammonification NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 6367.0487 4206.4380 2253.0645 2253.0645 20526.6399 11219.2474 9687.2063 4465.5039 219116787 actin_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 9403.6229 2987.2177 455900.5544 4335.7715 330809264 ppx Phosphorus Polyphosphate degradation NA Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 5761.7723 6086.9972 8090.3909 100972.0003 3967.7634 4643.8995 2275.6593 5318.8499 9132.2724 3999.2015 91353.3833 8816.4800 6497.0251 4995.3205 4931.5560 4931.5560 9697.3907 13673.1310 6489.4278 12809.9924 16663.1942 5756.6497 4045.6366 4845.5909 10280.2332 9320.6138 17801.5765 12894.4058 28473.9655 3752.5801 7087.5869 16989.9774 3379.7142 12293.8705 365971867 cysJ Sulfur Reduction NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 14738.1285 3553296.7924 1025041.0909 7821.2276 11760.8028 28092.4248 3172.4297 5149.1938 7136.4049 8647.0682 13351.5409 9249.1590 158764.4979 43232.7187 8030.0847 6814.7006 8096.6714 8096.6714 5934.7250 29358.8717 10443.2431 8873.4736 10346.2418 13114.3334 7171.2945 12113.3908 10982.6453 166746.6818 17325.2077 10397.5987 29708.6145 8720.9741 18466.6447 8049.3281 9526.0038 258576.2841 83701114 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7951.4261 6369.9376 10159.1796 9399.7482 6588.1506 3648.6025 6365.7698 8066.5589 6215.8595 161480.7033 13079.8749 7356.7745 4810.6554 2744.6166 2744.6166 4924.5507 16026.4468 10206.9891 7099.3260 8084.9918 11016.7392 4880.4401 4425.9702 10387.2482 3682.3597 17148.1552 11025.1159 13898.0359 5545.8579 6082.1547 85900.3617 4781.0482 13515.7128 116611562 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8414.9728 2779.0781 4010.9544 2049.9007 2049.9007 10483.8865 4479.4949 3591.7010 2609.7451 290781797 nifh Nitrogen Nitrogen fixation NA Megasphaera genomosp. type_1 str. 28L superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 26812.5737 21476.8120 24487.7986 59639.0156 16669.7249 10695.5567 13890.7835 11197.7686 21141.3737 12121.7605 422572.1294 13628.8351 28728.3755 80132.8386 33619.5696 33619.5696 10679.4206 31565.4955 22945.9891 64072.0256 20222.8036 19980.8442 6999.1951 11177.2945 25550.0862 34611.3125 37986.5166 43500.9352 22652.7071 18721.3335 14453.6516 12408.5585 10177.2308 22744.5433 229818403 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7685.4757 74984.9607 7086.3326 10168.5709 11872.5511 6974.4067 7521.2346 11781.0274 198558.4896 18486.9707 182577.9278 6830.7896 6715.3000 18821.0528 4856.8201 4856.8201 7799.8883 27621.7986 9866.6172 10068.4432 12492.4974 114003.8426 6144.4130 46606.6610 9109.1498 25104.1742 44021.9841 23132.9565 12957.9344 8109.8248 13778.5508 16374.7490 8213.4305 15767.0518 297592241 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20263.7183 13680.7023 26082.4514 24070.7106 5691.2187 21557.8050 13503.5799 9922.1273 19817.6153 22606.7090 9481.5041 541632.1142 25826.5934 22295.6053 15542.6796 11260.8555 11260.8555 15926.9548 28113.9183 24007.0703 19504.1338 24795.4324 25644.5808 9456.8918 10890.3049 28437.8946 8616.4202 40271.4537 23061.1827 29372.7076 8431.1108 14113.9924 18679.3828 12603.5023 37261.7701 157408796 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 38832.1918 26194.5099 6513.9736 8461.7412 4946.8643 18117.7009 17780.8174 5534.1048 8092.7824 30981.6965 58168.8185 63805.3509 8556.3832 5629.7322 56454.7061 23335.4503 23335.4503 12635.5637 22810.2763 12719.5537 68708.6326 18616.5304 20213.0124 77422.0315 47322.3481 85199.0566 62808.1497 104535.9617 10423.6688 63200.1377 10643.0570 39171.8235 19512.7929 48235.9772 71956.0138 116804550 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 16684.6557 11024.4790 11590.3281 23380.5059 10454.0967 7147.8100 12445.2601 23396.7419 6114.1825 483416.6428 14997.0804 13877.0383 10903.4012 4442.1603 4442.1603 9981.0782 17096.6718 17279.1499 11508.9146 17728.0732 20784.3325 7484.3824 5542.7987 16797.6626 9265.8553 30482.3607 16268.6786 21852.2141 9644.8859 9552.1410 8109.0119 8853.8376 25402.2638 238696552 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 24785.4819 15533.6963 8230.4787 9630.3391 12099.7508 9060.7989 17807.5392 8862.1660 10109.9292 23580.3514 19785.7697 242570.1472 22272.6297 14051.6788 20371.4040 36525.4940 36525.4940 12589.5840 26285.0518 12590.3661 21434.1708 23433.2604 23495.0969 20920.8813 13992.0897 114898.9996 11966.7902 33698.1781 22635.3310 25989.8896 14592.0396 13269.0488 15513.7835 10805.5145 35282.7646 88785152 nosz Nitrogen Denitrification NA Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 282428.7293 27042.3836 133525.9860 174694.9887 87969.6099 676626.5719 148058.3709 144609.8619 236891.8281 142352.5882 165945.7179 115200.4103 3035307.7959 146668.8051 745658.2128 192540.0260 172704.3072 172704.3072 64386.0386 127461.0332 81581.1212 116136.9905 154782.0135 197881.8788 216828.1511 123175.6795 116078.0474 85597.5411 219571.8867 176209.9167 173901.9531 79470.1128 79332.8026 78874.2825 60987.7348 193454.4867 371954415 pme Carbon Cycling Carbon degradation Pectin Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 5175.2707 12652.4944 5766.1024 4074.6991 6459.0407 3969.4895 2268.6419 6601.9237 8364.0328 3705.3499 7046.5481 1969.1644 2982.2281 3709.5085 1958.1128 295977532 chrr Metal Homeostasis Chromium Detoxification Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 6302.9719 7504.1959 9332.7734 4731.5860 2209.9107 5869.8656 8296.0361 2678.5880 124176.0211 6737.9523 5660.7672 4611.8745 2122.2429 2122.2429 4256.1078 7612.8852 7508.3719 5295.1056 5548.2563 9702.5606 3384.3919 3671.8122 7921.4432 2437.1686 10310.7621 4277.9216 7492.0904 3935.8649 3184.9309 4610.6982 3524.4564 4335.1260 288574225 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 14286.0298 26310.5186 308276.2676 22445.3656 5185.0347 6360.2852 5593.7464 8182.6341 6101.5398 4852.8076 109545.6695 11326.9539 13181.1453 15621.1341 8709.4456 8709.4456 6343.0387 14808.5449 5812.6055 6831.6330 15351.6346 9245.3834 17837.4751 10566.9548 12225.4350 6435.0197 26303.9196 9249.0119 16740.8716 5808.1672 9251.8470 13215.3905 7800.2523 22788.6195 354573215 urec Nitrogen Ammonification NA Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 23213.0537 39539.8170 13101.3092 30861.6040 36895.4461 49608.8695 39362.6038 71399.6496 19083.8655 32896.9355 90316.0906 232681.9441 9711.1609 19916.9329 48985.5589 39382.2228 39382.2228 11443.0401 42084.2049 25668.3156 49408.4714 39378.5314 105334.5528 39226.6758 43485.4516 81221.6453 24987.4999 382508.6104 64381.7507 77880.6777 15043.7641 55597.6716 45067.5084 39929.3560 61899.6723 77378501 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9772.7920 11930.7909 3117.6284 3782.4960 4521.9323 5867.9934 3835.0738 61837.9201 4419.8611 8621.0473 4861.5690 2227.9431 2227.9431 10928.8199 9303.4529 4339.9501 8989.7779 5287.0217 3489.8111 4661.5946 7750.1817 3248.3742 14051.3422 6909.9695 3651.2094 21101.7314 4575.0863 3853.0832 7361.7100 229489436 cysJ Sulfur Reduction NA Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 106097.9142 24779.7563 51137.6554 55599.4990 64606.2976 70974.0906 80206.4074 213815.7132 41405.4468 148024.6832 122302.5833 108515.6779 3601518.4616 64480.5330 98192.4568 105243.5540 61472.9907 61472.9907 61265.5508 75733.5042 49083.0511 60848.5585 102470.9282 183003.8053 80902.4579 82185.4402 64164.6789 47610.3169 161785.7164 62388.6401 73354.1828 45820.6557 76181.4814 67249.8305 46327.3698 149502.3572 296020483 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 18053.4998 21546.7287 4491.8228 9861.2003 7047.4069 6442.5345 11388.0950 9681.2329 11698.8240 200768.1106 24972.0221 7678.2206 29259.2366 16011.1126 16011.1126 6299.8747 14346.4946 10283.6001 11951.2605 8027.0993 9889.3442 5911.9141 10314.2075 20038.3974 6312.5437 44968.8943 13534.4127 26139.4792 8047.4784 10235.6992 19713.5676 8270.2251 19703.4704 298544349 PRK Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 8033.3302 12428.8234 8237.3920 11386.7765 14218.8888 4774.9492 10002.9703 7243.5489 40136.1538 9662.4290 21381.0592 8988.6810 205953.9836 12516.0352 12384.6685 13586.6498 7645.6833 7645.6833 10333.2227 23858.5007 11139.7663 11515.1455 12441.4708 22048.4861 8225.9732 11082.2513 16649.3721 7805.2484 23593.7738 9857.6006 17757.9743 4767.5720 10433.8572 11511.9915 8822.7955 19667.2904 396931180 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 174185.1899 108798.8269 208190.6545 356517.3538 302087.8815 97061.6806 137489.0440 162248.0531 158976.4470 168244.9216 202203.2473 198266.6085 3512295.0218 175734.2004 310640.3054 538799.0614 208970.5044 208970.5044 258159.8245 205686.0269 257111.5668 959722.6046 442515.4371 383742.4104 115691.7650 122231.6534 232813.3220 196942.8106 383290.0128 196551.6240 256084.2605 269074.1550 158404.3780 161146.7533 165394.7397 1200031.3359 300659138 TIM Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 13897.1412 7613.8588 24067.7902 7262.7403 6369.3664 26530.9850 11995.2085 19120.5914 49839.4157 20029.1848 18020.7293 342008.5910 15441.2087 17369.5676 14768.3126 12423.4316 12423.4316 11868.2102 25463.0702 13065.6323 10258.0912 11702.2691 20747.7033 9162.7224 9947.0358 37416.9934 12156.3744 22163.1771 9476.0005 35740.5132 9625.9626 17729.3333 17893.2031 14730.2436 25410.0717 326954778 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 10395.9437 29192.5826 4941.2133 7262.7747 11153.5476 3042.7098 7432.5341 11554.1122 6029.0777 96734.9403 6287.4992 38536.0454 7372.6967 10301.9149 10301.9149 7645.1602 9254.1974 4601.4874 5000.2161 4263.6601 4639.4099 9448.9775 9279.3080 19535.2508 10371.9774 8815.4987 6075.4454 8463.2666 5432.7886 2943.1653 4884.6338 32470881 nira Nitrogen Assimilatory N reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 271734.9332 56143.0816 98801.3657 579755.9204 54235.7127 175813.4010 753584.8694 42936.8029 57302.0473 252637.1443 253341.0760 2928517.1026 142978.6666 54588.6209 114404.8970 81872.6441 81872.6441 94999.2747 383352.6735 125186.9428 166581.8463 141677.2255 434537.1909 89010.9448 60865.0116 344556.0156 92451.3897 195388.5610 42828.5537 159878.2637 155813.6214 113840.6424 141979.7844 79110.8307 184975.0229 74057877 PRI Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7360.0384 30100.2597 59512.7328 10389.5951 11542.3927 2672.2843 5756.8778 2112.4844 164508638 nosz Nitrogen Denitrification NA uncultured organism 5960.4446 3863.7506 8609.2339 222082.4413 5197.4074 2150.6807 2150.6807 6366.1465 3624.3426 121020.1868 12619.5642 4339.8928 6387.0920 2036.2023 5645.3010 218333148 phytase Phosphorus Phytic acid hydrolysis NA Hafnia alvei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia; 11481.0017 56672.5568 7503.7648 9185.7098 5937.5948 3502.2430 8125.7365 4615.3419 5273.2330 8302.5509 93717.4688 4724.7927 4788.7070 4898.3888 7821.1415 7821.1415 3697.5917 10755.8377 5893.5713 5175.7056 5338.3017 2660.0368 8341.5925 4114.3988 16057.3755 5764.3808 8999.7103 6557.9170 4346.8195 5174.5531 4185.8519 22272.3604 148270087 amyA Carbon Cycling Carbon degradation Starch Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 4993.3591 5293.0204 13017.6174 5086.8500 52075.6363 4623.2213 13777.4024 6828.7131 79927.5234 5975.9345 6001.1818 5385.5993 2439.0925 2439.0925 3271.1522 9393.6261 17631.0526 5314.5276 2354.3967 4015.6734 9005.9114 2399.1674 15245.2115 4762.3602 9650.1687 4151.8671 3922.9820 4337.3325 4533.4824 237683909 rgl Carbon Cycling Carbon degradation Pectin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 82155.3456 20535.6450 58187.4307 67719.6149 55336.8318 51267.6102 62210.9193 71972.4376 43512.7000 49437.2604 68730.5487 41790.8929 933983.7629 64114.9955 63021.4961 30471.0658 31340.0989 31340.0989 41684.8160 106929.7945 56537.0756 69719.9028 101153.5495 77426.4570 37725.3642 28182.4819 107454.9193 72022.5146 138592.9283 46531.7131 78425.7516 133500.9682 61108.4896 48774.5198 39714.4769 91035.9744 254511496 phn Organic Remediation Herbicides related compound NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 14813.2012 6492.8733 3895.1347 2994.7097 8539.4398 4816.7473 6185.2300 7429.2358 11219.7531 357456.7918 9531.2036 11963.1969 5735.6358 6969.3317 6969.3317 11084.2153 21061.4957 11059.9344 4875.7830 22059.0992 6481.3634 4629.9039 11185.7057 9338.0439 23668.6487 24196.5800 8309.3797 15629.0374 7917.7090 12355.0703 7006.7255 5572.2824 27178.7528 77378505 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3972.8709 4383.7237 9179.4917 7449.9433 2918.0995 6746.8477 2911.1081 70378.3925 4537.5795 69388.2392 9334.5431 9334.5431 6024.3000 7968.8076 3260.8607 5080.2816 4326.1976 5545.0571 5530.8656 4929.9260 2916.5857 3441.9532 2514.9874 12701.0337 179346860 soxY Sulfur Sulfur Oxidation NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 99556.7862 47808.3044 61257.8733 48408.1093 17399.6142 69973.2270 28990.2996 19002.3470 26623.4540 50268.4486 98669.4648 1008345.7332 48067.9640 53659.0585 65491.9587 52358.3832 52358.3832 197992.4478 54936.0893 42069.0886 84802.4744 108312.6043 1009645.5618 50300.6806 32502.1040 61691.2707 147111.6564 142564.9269 57890.1129 256691.9175 49956.8312 63232.5713 212781.3868 26194.8065 239876.1416 347364943 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 8874.5674 5467.6727 9977.1186 12433.1756 8194.1202 3043.0575 4680.4737 14493.7195 3620.4342 87385.3270 8845.9182 5928.0806 6237.8183 6237.8183 3795.4603 9718.2631 4672.2270 5894.8685 7476.9377 7830.9907 3139.3618 6395.4856 6829.5882 3895.6711 12708.2719 6461.1153 10026.1735 3628.2662 8608.4069 12643.0674 5183.1925 13155.1652 82799299 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus 5B2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8813.2064 6801.0051 12763.6936 51293.0547 8574.0653 7928.3833 10216.8947 4874.5863 5848.7265 51180.8300 6930.3896 150544.6970 13060.6849 11747.5626 9608.1171 6680.6120 6680.6120 6546.9442 18592.6915 16749.8299 6747.6161 10348.1576 13763.1386 5418.6313 8422.1380 15503.6591 6104.7609 18220.4244 10881.9891 14739.7296 11105.4479 14039.2699 9330.8522 5380.4335 7858.2892 292674507 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 4960.9035 11556.2084 19101.4860 17437.6867 4318.9544 8503.0464 6508.0754 5675.4770 6308.7054 4225.3253 110583.6812 4983.0586 8556.9459 5398.3267 5961.2998 5961.2998 2808.5760 10562.7229 15515.4311 5128.4330 5779.2869 3089.7274 5297.2769 7341.1168 18830.5178 15644.9284 10079.2711 4410.6627 6850.4969 10643.1045 3145.4898 124898840 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 43616.9335 69593.7026 43189.1820 463913.0705 64305.1597 27551.2820 33467.0780 201258.8049 26146.8282 47437.5185 55939.7706 64160.8365 1335925.0631 79986.2625 69747.1274 46897.2085 86898.3580 86898.3580 47422.8178 58961.9598 59211.1153 156111.8801 141415.8298 76910.5592 74877.3396 32931.9449 96047.5730 35194.3884 110601.6778 223971.7809 81104.5859 39220.0780 114595.9467 82193.1822 43520.3646 75112.6385 77685714 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 4081.4325 4285.2320 3989.7067 4077.7698 6832.0265 94497.0562 4834.1381 5036.2545 3747.5182 12885.5404 5567.6747 5449.9681 16742.7638 7675.7901 3874.6771 7622.1990 9323.2599 2935.2716 11385.0706 5352.5646 8559.6899 3033.7808 5742.9106 6040.3734 2475.7777 10046.9078 67543188 arylest Organic Remediation Aromatics Other aromatics Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 14756.1591 5489.2992 35302.2152 30901.1448 6425.5855 5572.3492 20661.8413 4658.7344 16197.4865 13494.2845 8508.6668 434665.8816 13601.1860 15247.9505 14602.8813 14703.8432 14703.8432 9786.6503 20122.9823 15470.3381 9586.5318 22225.1692 10188.8087 6353.5974 9966.5840 17581.9514 7938.2300 30993.8690 24652.9631 18751.0837 11284.5488 16678.4092 11069.6565 17565.7040 18048.8015 354510633 amyA Carbon Cycling Carbon degradation Starch Corynebacterium glutamicum ATCC 14067 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 23314.5622 10724.2902 270853.3125 2522.8894 42838.7559 6493.6563 16102.3539 16121.0513 18524.8599 151836.5747 48163.5714 14281.8201 12417.4646 57842.0157 57842.0157 3451.6030 18616.5394 8758.3773 4484.1050 51540.4408 19894.2782 10680.3314 9674.8595 11035.9508 14425.4382 38301.9420 15069.4148 14866.2708 4969.9435 8842.2620 11841.5259 4282.7065 8881.3977 333921342 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4861.8251 2275.9587 5598.6775 3111.8458 4484.5308 2645.0363 95232.8078 2361.6160 2361.6160 9869.2968 5592.8089 5705.8965 5831.2415 3662.7045 9962.9955 4408.6413 9124.7918 2449.3184 3171.9864 5380.9854 2869.4016 10685.3352 288550556 ppx Phosphorus Polyphosphate degradation NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 17952.0869 13204.4074 27544.0294 18866.6884 15620.5958 16625.1345 8376.8397 6908.4868 41449.8197 16646.9395 18136.0157 447683.4053 23887.6370 11385.8431 10189.6498 58672.7793 58672.7793 12600.0404 29585.4413 11238.9168 5640.4924 8278.7711 18754.5336 7537.3804 10384.8350 17255.9517 19799.4801 28973.7636 25622.1888 17247.0597 8111.1071 11800.7698 16902.6219 18775.0755 10957.2870 324106170 cellobiase Carbon Cycling Carbon degradation Cellulose Sphingomonas sp. 2F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 63839.4671 3172.1523 3508.9625 158695.9275 3461.2862 6304.9367 1998.2334 6099.5223 4740.4238 9622537 bbsg Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9645.7312 7265.2454 58766.8805 8603.5334 4169.1718 5653.4688 7177.2403 10863.3736 46702.5797 9602.6951 238642.3333 8427.5379 18627.1824 6918.9742 38850.6107 38850.6107 10575.9706 14678.8315 9387.7769 10396.5672 7798.8647 7953.0758 3955.9330 6961.9113 12279.5448 5955.4928 21383.2320 23179.3330 16463.7393 47363.3182 9495.8267 12880.2108 9363.2207 45169.4710 378598740 FBPase Carbon Cycling Carbon fixation Calvin cycle Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 6833.8638 9326.4037 4146.9368 3326.1715 5435.5897 5458.0726 2991.1951 74971.8420 7447.2694 7109.5655 2729.4376 2729.4376 4844.6430 9464.6119 7581.5303 8175.7066 6559.5822 5958.7252 3161.1261 4405.1413 5884.4321 2422.1323 332478.5250 3878.4252 14416.2335 4062.1125 3725.1464 5765.3124 2106.7272 8026.6095 290570387 amyA Carbon Cycling Carbon degradation Starch Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 431639.7899 5431.1681 16476.5140 4299.8602 11058.9831 3466.3462 7085.9962 64209.5126 9096.5792 128287.5472 7842.7482 33837.6586 33802.6016 22261.5616 22261.5616 8295.0769 17517.4801 6714.2421 8981.2282 22022.3837 6940.5763 26369.9557 10724.9225 12675.8476 4454.7103 16467.2479 11904.3310 14203.5778 6082.6384 6422.2672 10353.1204 10444.7834 7559.7141 325291982 amyA Carbon Cycling Carbon degradation Starch Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 11079.8539 11325.8109 3047.4245 3045.6200 3480.6794 6633.5686 10511.3720 350555.3649 3873.2832 1957.1621 1957.1621 2982.5662 8876.3264 6762.1072 5438.9877 15976.6223 2508.0271 9630.8813 3624.4651 18083.2839 4549.4606 8351.1895 5965.0523 4558.2303 4101.0206 4496.3902 5830.1681 149202427 arsc Metal Homeostasis Arsenic Detoxification Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 22519.9025 11554.0722 6054.7341 10861.2814 6045.2918 270725.8357 8721.5926 47037.5421 8237.0232 92890.2095 13560.7189 157847.5925 8785.6057 10096.8139 22528.6693 7571.7980 7571.7980 16925.0540 27024.7618 10518.2173 21167.9157 20936.2104 16941.3388 6764.3198 9907.2125 20676.2188 7530.3358 33388.2517 12385.9532 18019.7680 26258.8666 15214.2992 11198.5969 19274.8245 13232.2331 90022192 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 4540.7919 8621.4880 10432.7099 3216.4638 4050.1309 2935.4070 4074.1906 2345.8451 4517.4867 4982.8303 4785.7815 4785.7815 19664.9040 11444.1289 5384.5077 164697.4750 4024.5468 16327.7580 9090.6685 10051.0491 7116.4996 7047.2407 2438.1031 125447.5232 4160.5018 2768.8729 8878.1756 407767621 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax hongdengensis A-11-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 26731.2672 81077.1227 26139.2349 9057.7086 12786.1951 17119.2634 11885.3544 64101.9894 18210.4184 16853.3002 403043.0111 46011.4169 20954.3976 12534.7525 12455.8424 12455.8424 11274.2039 33199.9010 18248.0426 32040.6331 72508.3998 29065.2985 14335.8058 12694.9909 22163.9266 20931.3697 40043.2488 44243.9224 30542.5390 12532.9938 19198.6440 20386.6839 16769.3246 21183.8697 167461492 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 19336.5393 14887.7664 5565.6045 18929.0472 7851.1174 12943.3208 13392.7622 7894.3870 15067.1924 118403.9627 9008.5511 18386.9292 10456.7088 22842.7952 22842.7952 9356.7954 24839.2752 16826.2224 24711.6767 11819.9927 36991.1033 18476.6731 18236.7272 17592.0890 11724.5698 104090.7450 42290.6184 17197.3298 8829.2123 23331.3028 16970.5508 8034.7901 25904.9835 258518611 tehb Metal Homeostasis Tellurium Detoxification Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 10386.5736 20172.3322 15147.9762 13137.1244 12750.5482 17181.3086 7953.3185 11546.6017 29003.7982 130991.7779 8427.7613 9314.9608 14487.3839 7712.7898 7712.7898 5632.2228 22426.9892 16034.3117 13679.8135 13214.7222 46293.1775 20495.4118 4409.2361 15855.5169 6277.8439 18139.7705 14740.8985 12710.5187 5830.6228 10435.2560 7222.1652 7420.2583 22108.9903 381146561 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium neoaurum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 15849.9673 11839.4920 296988.5386 20181.4503 27404.0121 12952.4517 20483.7814 10870.4761 21935.1130 14681.5712 23413.9558 9195.1026 401600.0963 20397.6425 39716.4614 55458.7898 16967.8453 16967.8453 26934.1900 33291.8243 21161.3511 37170.1562 25950.7756 22792.6143 10859.4896 32445.7544 19088.8514 19031.5772 32411.0604 19419.6029 22662.2733 16282.7479 12113.3552 16156.1370 13728.8161 96996.9643 357008642 amyA Carbon Cycling Carbon degradation Starch Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 6331.9291 2598.3487 217160 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 10521.2709 25251.8114 9459.6555 18716.6057 58229.8696 24834.2018 12886.2343 17464.1547 9015.1300 208540.1538 12420.7187 13558.2985 11703.2168 6276.6707 6276.6707 8078.0429 21289.3403 12598.6739 12973.5217 10021.5777 17592.2217 7638.3020 6393.7800 31024.1659 9517.1581 19879.6675 9176.2485 15747.0922 7538.7393 7722.8698 10393.9299 7135.3772 11893.5842 329308295 xylj Organic Remediation Aromatics BTEX and related aromatics Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 8775.8664 57754.6056 15621.1290 3049.8831 3553.8730 3387.8651 4960.4782 6328.3681 3549.6683 3549.6683 3101.9462 11063.2856 5002.5191 6373.0213 24079.4592 3895.8437 9257.7994 13922.8451 5812.3796 16391.1597 6620.0510 4033.5776 5500.6359 2020.2957 6189.5686 167731391 linb Organic Remediation Pesticides related compound NA Xanthomonas campestris pv. campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 24799.3102 32093.8783 15063.5633 50416.3099 7534.5186 14458.4446 57590.5238 86417.9640 97410.7228 25354.6365 33065.1149 507577.8172 19589.4267 31862.5294 62530.1178 17884.1322 17884.1322 13332.9343 37624.2609 112039.3385 35379.0320 64519.4947 18164.3023 22121.1110 23792.2091 39972.1247 32543.7482 81139.0946 35785.6172 35682.8508 22355.8833 25240.7582 22277.3965 30109.2913 49493.5283 78518659 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 104572.1711 4575.5703 87359.6014 7195.5212 17214.1674 112956.6077 13529.4609 10219.0216 18698.7542 27238.6609 651226.3268 19109.2205 37443.5625 169693.1638 27494.4841 27494.4841 25810.6246 33078.3763 21817.7584 203377.0872 57517.6130 49825.1650 39204.3502 25441.1841 27309.0489 13891.2021 56846.5797 17977.0195 52111.2832 48623.1571 38012.1381 23669.2945 14006.2902 35376.9835 156839757 ppx Phosphorus Polyphosphate degradation NA Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 7266.6301 6316.4915 8599.5543 4644.2487 5204.7321 3404.0416 7407.7852 7323.9702 3712.3416 161886.6480 9198.3914 8514.4059 4397.8926 2963.8963 2963.8963 8136.7217 11162.3713 9836.3859 11138.5664 11387.0284 9892.4509 4192.2942 4718.1171 11183.6858 3761.3996 19115.9770 10319.8718 14488.5975 5350.4901 7320.3469 9153.0432 4830.5266 17389.5133 307725898 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6506.1927 5308.9628 9630.5820 2531.0784 4027.9269 10798.2053 85625.6943 8674.1921 3333.0140 6719.7416 6719.7416 2888.2999 11868.3702 6174.4605 4934.6513 4959.9443 6034.1131 3082.9702 3420.8419 6686.4616 2240.0152 10139.6419 7988.6820 3441.7630 3760.6882 7824.8423 9223.8469 7861.1665 168705466 Sir Sulfur sulfite reduction NA Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 49021.1919 33570.8170 18097.7225 29187.7441 11299.4365 44817.7131 33683.3106 45718.1929 32643.9376 39443.9546 23701.7314 855077.6400 34266.3731 88644.4035 44049.3197 27328.6574 27328.6574 19556.6482 67019.3718 26529.4452 44083.4545 106117.4225 33469.2472 28329.1017 30472.9350 32028.0297 79083.0740 122419.4432 79314.5641 37361.2626 27160.8719 34480.6399 50524.1469 24648.8423 104635.4126 293604820 napa Nitrogen Dissimilatory N reduction NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 19635.5143 15535.9972 8561.8840 4070.1472 13282.7948 35199.4759 9410.8669 21553.1608 6341.0970 244225.1883 18533.1142 20031.9323 15220.0567 9738.5059 9738.5059 7229.0044 26912.1834 13798.1090 10079.7234 56384.2621 35490.6039 5123.4232 10528.6327 17615.1827 12201.3252 32527.0666 21615.4604 13100.3843 9887.0394 12742.5663 14426.1377 21329.9061 19026.4300 78515749 nosz Nitrogen Denitrification NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4705.4711 5141.2210 3267.3506 3216.4739 6218.4959 2606.2551 10307.0586 4246.6134 4541.2162 4541.2162 9047.5942 5695.6067 3005.5221 13673.2220 8585.5035 5306.7646 7539.8222 3975.3175 3193.7029 4242.4968 5097.3903 21220080 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 80512.6366 74113.3095 24225.2965 49359.2494 10806.2694 41788.7286 49333.1350 19321.2755 38150.7906 25725.5018 728149.4116 26836.2143 26754.9355 39751.6184 29266.9944 29266.9944 19915.0112 40545.4526 22600.4449 62981.8051 30584.2629 136287.3952 21986.7635 32580.6826 16996.6037 22879.3902 42018.2509 16452.6274 26155.1623 13639.6394 26041.5856 40991.1007 21171.5694 41156.1175 322511794 dsra Sulfur sulfite reduction NA delta proteobacterium SCGC AAA240-C23 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 59804.7752 24536.8027 18776.4688 7012.6813 59513.1437 15971.6302 75235.5113 17716.5695 65898.0922 224722.4305 20871.8083 22721.4493 133865.4517 56156.7820 56156.7820 17211.0788 61137.6434 8307.3331 19903.5797 39358.1731 12770.4730 30785.6974 65187.7816 29025.8065 71227.1590 61057.3956 28637.4167 32957.5281 9481.7751 18493.3511 32519.4804 17749.1770 77131.7181 336103340 linb Organic Remediation Pesticides related compound NA Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 18348.8860 8931.0559 20300.4388 13847.0081 9029.0390 7346.6062 10533.5527 5314.5184 12826.5458 12842.6479 191644.6960 7135.4591 14270.7995 26882.3064 7129.6113 7129.6113 7097.8243 31957.3378 7554.6190 5842.2205 18330.1068 6844.7124 5220.5146 25361.1572 10053.1231 4620.6681 33057.0241 11336.5850 15289.5291 7757.2105 5407.6071 7395.4900 6780.0022 29097.3198 109290265 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8034.1485 9831.1095 4035.4981 3620.2613 1977.5599 5724.2365 35918.5989 10064.3021 126967.6078 9988.1983 4716.4883 24692.5977 6262.7306 6262.7306 6398.5823 8399.3462 4293.5057 6034.5038 4338.0317 5957.4804 5664.9222 2599.6850 19542.9470 11570.0848 6210.9188 2744.8427 6256.6208 11695.0488 6217.2274 4528.2256 38016628 nitrilase Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 43529.5956 343188.9877 4540.5536 57116.1775 4965.8608 12291.3649 17840.8453 13208.6135 15822.3959 71134.3275 58233.9479 454004.6776 50425.4083 84247.6457 40668.3185 100791.0994 100791.0994 32320.2539 38953.8910 17915.8512 64897.9663 72470.3135 23127.6173 20522.8570 21742.1298 29646.8392 54968.2108 93391.6489 34707.2904 45265.9775 29822.5296 35751.0878 42849.6265 38547.3173 8776.1837 380737386 amyA Carbon Cycling Carbon degradation Starch Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11131.6806 13871.7814 4832.4073 6364.2181 7007.2925 4366.4996 5502.6398 15210.7362 7172.4129 159132.6712 8084.7077 20414.1548 10913.7959 14776.9274 14776.9274 4552.3747 15079.9798 10794.2212 23918.0270 17001.5618 11140.6792 14749.0565 8694.7150 10374.3718 10776.5604 32283.6994 11475.6829 19232.9553 5963.1978 20709.1056 11856.6771 21211.8252 9195.0866 349702037 atzb Organic Remediation Herbicides related compound NA Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 11333.9236 15963.9959 18416.9375 14322.7881 6530.4706 3717.3764 8253.8341 9637.6783 15509.0879 92012.5561 8247.2552 7619.7368 5965.4915 3911.3521 3911.3521 5025.0913 12549.8422 8328.6692 6006.5491 11839.6784 9557.8638 4200.7141 10657.6972 13052.1279 6278.7670 16488.0118 12738.8734 14689.8075 5434.3799 4394.6485 20062.9059 6912.9816 12798.6073 116196714 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 27519.9482 14623.8160 18113.3973 16041.8567 26238.6949 21580.2664 6791.9974 9423.5894 13023.3851 12998.4615 264034.5895 21366.7373 41187.4531 21204.8713 13807.4063 13807.4063 22315.0477 27995.9990 10541.2936 173259.7953 22798.4754 45010.9113 14928.4677 9466.9954 14620.1183 10116.8603 38244.3160 19124.4920 21927.7556 9962.9332 10674.6190 23239.0716 9562.2314 28208.8130 40218014 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 6100.9475 2339.5075 2531.3190 3536.0410 3838.2843 82566.1801 6068.3832 3836.7970 8589.0459 8589.0459 4187.3512 6251.9436 6306.8315 4801.4075 2586.9618 3030.2101 2720.0940 14219.3995 6018.5668 4689.4172 5814.7495 333480912 bphF1 Organic Remediation Aromatics Polycyclic aromatics Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4937.5403 12607.4803 14034.2908 4510.8347 2746.4844 7134.0807 3921.7784 3415.2215 109324.3333 4659.5717 12723.7703 16081.8885 4690.9324 4690.9324 6558.2760 4588.7191 5908.6204 4007.2149 3645.0878 5188.6462 2903.8037 10644.7635 2478.3067 3799.7121 5198.4408 2037.7967 302404032 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 25325.6714 10474.7507 12544.0649 17985.6131 7695.5058 7537.4459 26609.0306 6207.0667 27883.3057 16476.2958 11506.7448 238012.7957 11752.8017 29306.2889 17442.0857 52360.6332 52360.6332 18093.7296 20765.3571 13238.4197 62116.2146 16883.7371 14946.8598 7884.0947 8626.8119 16344.5592 6525.3535 31599.3942 20934.9912 16350.0620 217376.7312 14801.0604 5331.8839 12590.0618 74038434 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 134293.9656 25710.9716 25360.3150 8523.3994 14091.5544 16618.4825 14543.4688 19256.9878 24541.2284 33252.1288 14103.5208 29888.8726 39448.7594 20276.3776 18485.0789 18485.0789 24463.0442 39326.8643 24145.1444 192522.7711 44646.4662 29502.2940 15565.3307 18701.8855 35685.8642 39793.6974 58989.0707 61046.8541 35661.4967 19270.6787 19515.7760 25713.3644 15913.4834 59330.9080 110816786 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 24425.3477 102564.6330 10249.0794 33027.9680 67031.5341 29057.7986 22371.9656 7891.2204 78363.9730 20330.2928 32892.2945 1134463.3162 36398.4897 22080.4035 35359.5364 34513.5786 34513.5786 14995.9671 33218.1906 24194.8102 10097.6631 26237.0486 12070.2040 8499.0092 25421.3029 45842.0363 33860.0072 47904.8096 26691.1062 26740.3573 11956.6908 19297.5095 35527.5968 9758.6523 115317.4527 256421611 endochitinase Carbon Cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 4521.1702 9873.5426 9065.6537 3230.9224 68051.2978 4728.6630 4282.0993 8832.7963 5539.3730 4373.0020 7150.1872 5033.2947 3774.8563 2513.7208 10258.1687 2608.3021 11866.3780 11444.3285 7140.1197 2478.9299 3745.8913 4108.6192 6695.9763 261353122 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 8363.7983 14245.0354 2922.6030 2697.6988 4839.0577 4440.1009 3848.1250 89171.9578 6131.7980 3984.0768 5683.8783 5683.8783 2932.3135 7499.0005 6741.7681 4900.8278 5080.7695 6329.1769 13472.9600 62898.9488 9143.7409 4751.0459 7416.4383 3396.0231 2879.4696 7100.5569 3703.1834 8806.6874 159179174 phn Organic Remediation Herbicides related compound NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 82975.8158 5399.4404 9001.6362 2682.2458 5003.7244 8757.4272 10232.0140 12583.1464 5867.6316 197056.5076 11947.8480 10596.7930 10666.6754 9478.9801 9478.9801 11044.8078 14321.1895 10912.0584 11692.9733 75555.3121 14882.7082 25078.5347 10081.9887 18234.5138 4876.0535 13202.7395 16542.0241 15264.6356 6597.6096 14812.2371 9956.0876 9793.9847 12797.0894 41397940 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8127.4257 11862.0527 4723.8025 2895.3551 4016.4958 2545.6973 77182.4334 4470.1513 4519.8036 2092.3906 2092.3906 7645.4861 5554.8289 14254.2275 6264.2822 27264.2529 7364.0236 2307.7975 9645.4601 5141.0107 6049.7863 3074.6015 5017.6304 4939.0682 7610.6886 220936396 PRK Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 15880.7505 36417.3925 290857.3024 11044.1967 7714.5465 10959.3557 8465.5651 10194.0354 9595.1836 17968.4094 21469.2561 8361.4302 190020.9041 16896.2580 5911.7009 38875.9081 13575.1660 13575.1660 16715.6130 23522.9937 6445.6717 84798.3603 29653.8461 10142.1875 5162.7414 14021.0860 28031.3934 5814.5902 40141.8243 10269.2997 13111.6223 5692.9841 10708.3201 10705.0282 9542.6508 8869.4173 55791888 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 63996.4640 29055.3729 18540.2896 17581.6452 22442.7900 5069.8784 232117.2045 26919.5035 74850.0148 23065.7896 44877.8842 30189.4183 546987.0090 28038.8447 58698.5102 47194.3354 29040.4478 29040.4478 20961.0384 50252.2392 31327.4773 45777.3402 47082.2284 41362.6346 18919.6045 25909.0395 37054.0112 22983.9448 56810.7125 49429.6893 50149.6554 17397.5786 57499.8773 29658.4017 19036.3239 49092.3436 184192923 pchcf Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 20446.0319 8981.3977 11012.9265 20545.9413 12871.6127 43893.6066 33960.8925 42532.7660 23686.1056 126243.7314 32741.4303 757895.1466 31759.5972 33845.2063 46701.4986 34993.7562 34993.7562 10857.7418 38375.4552 16427.2649 16104.4406 82492.4606 47834.1667 27687.7244 30160.9072 40195.2937 35801.0719 72492.3061 23180.8295 62666.2526 19750.6050 24800.2811 38043.5049 17449.3882 37402.1497 18161012 mer Metal Homeostasis Mercury Detoxification Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 4902.3526 3784.6170 2657.6736 4022.1166 7826.4834 63172.5471 6444.0772 5038.7243 1907.3950 1907.3950 4113.4516 6809.5544 5786.4291 4169.0197 8331.0177 5720.6148 2882.1920 2849.7924 10735.6872 2526.5311 9561.5974 7090.5704 7001.5321 2173.8363 4058.1105 4992.2485 4009.0975 6574.7114 179343034 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 25900.9047 20252.2959 189088.8368 26467.9770 104747.7133 67754.0238 35046.5129 46385.0322 12367.3334 192394.2500 40588.2372 28771.1222 893894.2611 90356.1210 32548.2227 43428.3249 23103.6496 23103.6496 22212.5425 65895.1314 55740.2102 31688.3111 53497.6208 20103.1705 21525.9031 35079.9758 63331.4450 30072.9757 129240.5987 49078.4988 58885.8127 44696.0106 32788.0368 37173.3898 18801.3725 30387.1734 357201904 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 5207.8902 9654.5828 5108.6244 6109.1927 2730.4992 97599.1135 120391.3064 5320.3412 4811.4014 8335.9115 8335.9115 3382.7755 10818.4844 4674.9907 5910.6276 9268.7055 4661.6386 4083.4270 13364.8787 8946.2502 3132.7753 9810.3146 3590.2065 8886.3581 2459.0683 3473.7334 3822.7351 4087.1726 9117.4132 262408423 rgl Carbon Cycling Carbon degradation Pectin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5229.6001 4148.2374 4147.3679 3780.2005 6028.6867 3604.4555 4362.8128 4557.8035 4113.8194 4113.8194 3233.5633 8202.5628 5083.5614 9137.6916 6477.5684 22046.0360 2325.4375 3763.9300 8415.9909 3230.0445 20332.6634 36479.4204 7473.2685 2309.2569 4304.3956 3907.0907 2821.1211 5427.0511 299471541 actin_Stramenopiles Other Phylogenetic NA Ectocarpus siliculosus superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 4185.6996 24858.1571 164455700 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11334.7149 62123.3831 6976.9288 7762.3676 295699736 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4885.4296 2289.7365 5437.6365 2799.5430 5338.0218 5618.3039 3617.8154 123556.0358 6761.8630 4585.7057 7869.7645 8898.0180 10026.3158 4946.6371 8808.9881 4126.3758 15364.9020 3383.4883 12159.6723 2405.7189 19011.1302 8588.0032 7973.9157 4351.3262 5067.0187 12238.9766 3895.9620 11751.3613 372000025 atzd Organic Remediation Herbicides related compound NA Rhodococcus sp. Mel superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 140929.0996 6294.3725 3756.8268 4365.7239 8543.7668 5486.8208 4889.7526 2957.0481 3772.6542 3253.0526 2968.3554 4685.5460 161380716 ppx Phosphorus Polyphosphate degradation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 44831.3333 44354.5301 163846.8365 11861.3916 15501.0358 4590.0687 22674.3882 37887.0368 13412.4960 31133.6157 44386.7234 26290.6992 650413.5580 28408.8323 402623.6419 1872183.5292 33700.7213 33700.7213 19044.0370 57351.1509 29647.0174 784235.8986 31269.6845 26563.4969 16792.1644 28944.4956 22889.9905 64799.7360 77015.8746 21849.3133 32540.5085 38491.4697 24912.5846 29113.2752 22715.6732 43721.2984 294476997 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 7024.5520 5001.5245 11746.1122 3657.3932 5464.0969 2909.8727 4172.5569 46322.1584 5018.3310 130237.4121 10605.6038 8048.9787 4499.3732 9348.2655 9348.2655 4565.9022 11852.8702 11381.7610 3709.5632 7089.9742 7413.7272 2575.5709 3011.1982 10150.5208 4391.4386 14784.3738 7950.7865 13428.8117 3935.0550 7759.7450 5189.1358 3243.8625 5310.8662 7801167 dextranase_fungi Carbon Cycling Carbon degradation sucrose Penicillium funiculosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 10750.8192 13775.3657 19609.4491 1037402.5329 6296.7054 4599.3701 13977.3664 9416.1763 25124.5428 3964.5369 140471.0709 6853.3015 10912.6763 5571.7760 5571.7760 6593.1459 17184.3232 9482.2473 11052.5100 11868.3776 5404.9373 10732.1864 5886.2480 12455.2807 6251.4101 23936.4055 10389.7099 17215.7413 6124.7004 7355.4306 5184.2271 5271.1734 7188.3442 76058170 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8698.6102 24718.7769 8356.1909 6522.9154 6413.3447 4256.6817 199409.3154 6503.2249 14201.7679 9096.3117 9552.6197 9552.6197 5451.2625 10285.0542 8292.7838 7207.4009 4235.7913 7788.1096 11915.6422 5370.8510 11400.8484 10519.7031 9339.7841 6042.1205 5608.3364 13097.2380 127601.5029 6266.3982 211592468 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 20866.2724 8529.8283 6012.0051 10697.2825 7372.6666 177213.4211 13875.9961 11840.6435 29070.9908 25751.6951 18600.6846 219918.4611 18565.3011 13764.3968 24937.4884 21739.7368 21739.7368 7963.3169 30021.3058 19350.0090 22202.2012 24481.7954 28725.4734 12961.8834 20485.3130 22139.2326 27169.4595 62582.4264 23301.0735 31325.2190 14839.6345 17513.4558 14453.0738 22961.2250 56669.4998 377568850 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 7180.4061 21966.9186 27675.2250 25436.9331 35114.8344 6153.5408 6692.1752 5289.8284 3831.2677 75757.2332 5004.8866 64763.9619 5736.1925 10218.1952 10218.1952 5027.0582 17783.9590 10472.1000 4186.1336 5367.0499 3148.5917 13517.0327 3176.2381 48643.6265 13118.8963 15559.7991 20890.0156 5874.5551 5941.5203 3577.6530 304391967 FBPase Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 27610.9806 18938.3888 20243.4305 15503.1500 5208.7243 23230.4290 24074.7499 14010.3522 21900.2887 27981.0470 16624.3041 729433.8510 47294.3631 54914.5031 55756.0194 24530.0660 24530.0660 10703.4459 69666.0288 18791.8174 16957.9642 19893.9759 16422.4935 43823.4576 22318.4893 44799.6811 39752.6039 412451.8190 29415.5981 33196.9460 18896.6388 42869.2649 31148.7129 29303.2911 16042.2560 115442834 tfth Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 25792.7205 11120.6116 6497.8364 13050.1795 8139.4060 7440.7910 6757.4645 13240.8651 18171.3436 43264.2831 53421.4755 757220.5319 15303.1496 57857.4019 134556.6318 26374.4477 26374.4477 31368.5910 61543.7703 23934.2938 34364.5951 25117.3029 21943.9419 18868.8142 20835.2266 30632.5065 19501.3457 56348.6434 91452.4282 48352.4554 79632.7279 23912.5075 27688.0399 10750.6415 15104.3118 3157608 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 17765.2087 10187.8887 14003.4130 19409.4048 9232.3559 14674.8424 192708.8744 18548.9130 18625.9656 16891.5611 26755.9995 276264.6049 23257.1226 23743.3478 69530.4553 45190.8380 45190.8380 255677.6541 54460.6211 143811.2647 1364391.2612 21477.2568 13953.1219 49817.4337 14046.1628 73049.5005 170935.5214 54674.5971 20689.1889 31158.6129 110675.0976 12150.5109 13859.3345 65967.8158 73878.7425 302458099 phta Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 4353.6668 11488.8997 4593.6283 4301.6657 4592.2472 79137.5320 4299.6588 7453.9871 5091.0495 4451.1258 6746.1022 2296.4779 6209.3972 7892.9281 4001.1131 7068.7045 3160.1266 3648.3750 2836.4006 5051.7914 90954569 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 148455.6843 11490.8373 77344.8035 104432.4802 84601.1483 45737.6870 28278.1093 198102.4101 20650.6446 89941.3604 61428.6862 38682.7513 1495991.7090 90575.2928 56836.9282 158935.8221 79734.2852 79734.2852 48883.6612 66953.0428 52098.0191 343924.1635 95363.2058 54912.6587 36764.4069 40529.6877 76829.1149 175830.8088 139069.7093 106172.7814 109869.8498 68681.3629 39221.6754 43428.0638 40403.8433 62950.6434 343788427 cysI Sulfur Other NA Rhizobium sp. LPU83 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 629620.6634 133334.0757 351065.0139 25756.7399 11969.7592 4213.0060 54347.6924 49149.0940 41920.8538 35139.9490 69280.4043 35259.3604 661519.2145 19830.7869 25030.0611 35550.4582 21316.3433 21316.3433 15267.1628 55202.7508 18124.8383 36954.7026 97826.9632 36303.7753 11637.2040 24303.8527 654550.7796 39997.2439 54033.0816 29751.0708 210005.8854 8489.8497 51444.0532 21096.3177 19516.8953 20024.3371 82618399 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 70878.3592 11007.1275 29427.6911 20200.7501 15857.1965 14141.8062 48396.1260 36877.7613 83655.9899 42159.9864 33046.0353 385956.0747 27984.2570 21829.0345 33103.7204 46070.8072 46070.8072 17840.5716 41501.3585 191750.6466 27341.7302 59913.0875 30516.9525 28544.3362 21517.9450 35437.8119 77060.5072 74946.6795 34277.9820 30650.7381 156996.8421 35541.7604 39488.5736 15559.8851 48057.6054 83835799 pcag Organic Remediation Aromatics Other aromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 18980.9395 18775.4961 54693.4911 26242.0495 6276.6472 26385.5068 7707.0876 17175.5755 13214.7086 18120.7125 506367.4838 31703.2411 20630.0702 49896.7982 35447.9205 35447.9205 8121.7498 27755.7608 15341.3892 12476.8105 12219.9341 7529.3389 6616.5404 27209.8768 45513.4468 11920.3448 39201.6474 32546.5629 38939.8948 13319.5766 31945.7702 21198.6427 4894.8688 9015.4193 126249774 dsrB Sulfur sulfite reduction NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 9103.6089 3938.8776 6242.9128 3024.0471 3511.5439 3256.3136 2810.4742 68023.2575 21205.4012 5779.0060 4532.3412 4532.3412 17857.6203 9481.8770 4875.2875 3563.3458 6109.4962 2204.2699 2820.3106 8607.4833 10948.5851 10253.6566 5974.8063 11796.3776 7149.3248 5740.5945 2897.3512 2366.8256 17284.7083 302679170 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 45121.3574 22903.9916 12823.5617 46723.6268 205615.4233 38244.9116 22687.9989 17309.2090 14023.9233 70642.3012 25293.9616 2056766.5875 29461.6657 21436.2316 30764.2086 188346.9222 188346.9222 24561.6309 53430.9329 12122.9986 38357.8683 75945.6735 104660.1542 18558.6455 41282.1642 41849.4120 33367.0556 202529.1246 56332.5260 44785.5915 15074.5428 22180.9129 25875.3440 32820.6424 19965.6425 402259493 nitrilase Organic Remediation Aromatics Other aromatics Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 14732.2232 14124.3774 8172.6228 32787.2068 5134.8679 3977.6146 18935.9042 52831.7148 11892.2968 27546.8634 79084.2942 247210.1730 21262.9821 27222.8331 10722.9558 24917.6698 24917.6698 9790.4978 32531.3564 18668.2495 170806.4847 97023.1721 38525.4110 15539.6004 14067.4420 21723.5683 12810.1213 83915.0583 21135.0797 25606.7304 42392.4345 22957.0000 26305.1873 9791.4004 26523.8796 294883858 aoxb Metal Homeostasis Arsenic Detoxification Alcaligenes sp. S46 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 6551.5694 6905.4226 98639.4273 2987.3163 3775.3165 106957.5766 4761.9619 3799.6207 3306.6856 9147.0894 4938.0485 10931.4745 2065.6951 6080.7582 8148.7026 2589.4265 2776.1570 15706.4514 2381.7912 7189.0999 387870986 amyA Carbon Cycling Carbon degradation Starch Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 1079894.5325 2285.9316 3070.3701 4174.3705 1835.5129 1835.5129 6145.8170 6734.5686 5658.7815 54494.9097 2258.5185 5053.8369 3099.1975 2848.0859 197621366 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7714.7144 26585.0179 120984.0327 47693.3704 17258.6206 6788.0997 77391.3793 5243.1314 50539.5692 7618.9283 8048.9234 8048.9234 20123.9586 8241.8508 16247.2178 6296.0913 20548.5693 12536.9550 5324.9660 84423.8004 5796.3763 14044.2998 4000.8953 4009.8487 7106.5898 25678.4629 313837825 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL037PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 35402.2991 68690.6003 44402.6124 3030.9811 28481.8482 19412.8010 3676.9487 5967.4162 11872.8030 96417.5947 7235.8585 7163.9550 7407.0604 4205.4705 4205.4705 61832.1222 36570.7438 6520.5159 13422.0442 14597.1753 7093.0333 30043.1170 21405.3077 7298.9573 4333.9800 33874.0895 41119.7373 102265.7319 5676.7255 7130.8671 5488.6599 6535.4352 6530.2930 302435484 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5673.5543 4236.7657 3260.5056 4349.2638 3477.8241 5107.7494 8273.1662 4226.9328 135926.9886 4360.9978 5932.8415 7808.1964 3054.3333 3054.3333 3635.6214 9157.9058 7697.2810 6226.5243 5317.9946 5644.2779 4083.1598 4294.0932 8045.2397 5349.1706 18398.5923 5774.2110 9911.2562 3519.6405 4383.7669 3928.9526 4119.7555 6759.8969 296264346 tktA Carbon Cycling Carbon fixation Calvin cycle Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 5430.3389 7584.7641 20821.4044 2749.6925 8626.5685 5435.4813 23227.2486 53168.2642 207749.7350 20154.0313 32607.3914 11675.3855 9074.4052 9074.4052 5702.8746 22398.5512 13828.3925 6315.1632 2160.5759 8403.6876 25723.5964 5664.8316 100883.7575 10184.2443 17037.6893 3225.9997 4958.2952 8107.1302 2481.1343 149783097 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 63573.6942 52496.7170 112975.2615 155867.0835 59420.3350 38945.6716 37589.0142 720532.0072 68833.0714 122091.3702 115634.7978 97241.1871 969644.9898 88535.3917 122591.8872 127454.4108 135245.0999 135245.0999 270877.9905 186015.0481 53873.9162 59180.4251 190848.6039 259295.0134 88872.4357 104908.2842 371709.6576 309015.3462 418216.5376 160482.9315 175292.7074 140869.5326 95419.7560 173556.7558 385991.3368 542249.5312 197931425 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 52396.7314 44635.3219 59508.7173 125944.5609 45038.3081 9459.0542 35275.6584 66663.7786 30564.8955 47069.5152 38152.1445 38593.9043 1227161.2971 76786.5730 53245.2543 49617.2514 41786.3005 41786.3005 71996.9464 78444.0099 44053.8465 50437.1495 141011.9377 69438.2573 33485.0845 35852.2003 69719.4855 30965.8279 131204.6954 31443.9262 58981.4524 26987.1083 35211.7085 65198.0066 34593.8348 81224.5963 39985190 nrfa Nitrogen Dissimilatory N reduction NA Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 7950.6750 7429.9409 34579.3368 78971.3986 14050.0572 30129.8033 15085.4028 8670.6069 8352.0906 10912.7798 11659.2460 261175.6198 31605.0108 23181.4763 21858.8515 21427.0290 21427.0290 7953.8449 22902.3471 14237.1934 5561.4979 6469.1723 19276.1820 11842.2125 9831.2049 63343.3298 12664.9532 271334.6539 27462.2995 32232.3053 9537.2524 14521.1455 12194.1655 4731.9850 6831.6627 371588337 alginase Carbon Cycling Carbon degradation Alginate Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 48327.6740 20065.8878 34758.3734 60469.1798 50319.2737 14230.1364 26098.1474 55890.0194 14924.5619 35212.9952 153264.2618 48425.6152 714575.7316 42203.8804 36782.2792 104959.7785 23425.0347 23425.0347 25986.4157 47978.3529 41798.9154 202367.4881 36202.9541 46785.0741 21921.3649 19379.6838 48577.0576 61824.9920 70863.6200 69234.3975 49778.0069 23912.1734 102285.2302 24308.4391 17649.9427 56572.9506 383789538 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 19490.4072 3653853.1283 1025039.1492 6946.3395 3234.0945 5113.9133 5498.1230 2563.7232 2563.7232 5630.7569 63288.9962 2549.0975 38814.5978 11238.4185 2364.7888 512436.1103 119497855 invertase_fungi Carbon Cycling Carbon degradation sucrose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 277978.8863 41179.3590 9284.0802 323175.7000 7558.0160 302571941 amyA Carbon Cycling Carbon degradation Starch Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 37468.8698 20571.7894 103270.5013 79382.2612 129636.8147 11742.1413 17300.0874 19238.0848 17974.2472 65554.5058 65204.7573 559892.8214 396689.8953 53344.1746 50006.8019 43621.9154 43621.9154 17099.7840 42598.9530 25096.7066 33257.7936 33017.1455 34390.7749 12917.9680 21702.7816 93902.1101 96586.4707 57784.4756 72138.7224 32910.5664 17388.3740 24032.1704 24272.3669 12405.3602 24717.6333 336425030 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 79030.1840 31426.5857 129426.2696 102119.2343 41241.1223 12783.3502 38319.5253 29512.2440 30266.1156 45766.9020 59386.2129 36234.1823 3968982.3023 48519.5975 68701.4286 46628.0592 28142.6834 28142.6834 46741.8543 77414.1570 62045.3548 78685.8477 87045.9122 91984.7491 28969.6842 30501.6309 62588.9617 25911.2706 124270.7466 34203.5651 68747.5486 29896.4655 43929.9684 43798.5096 59699.9054 85102.1129 83701122 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27517.5197 14569.1026 20442.0150 64612.4844 13637.8735 7254.4891 21820.8021 13886.3114 15587.8666 23487.1253 94320.9485 22186.1791 441133.6698 26979.0486 29134.6529 20230.3944 25326.0847 25326.0847 21242.7505 34796.9771 25901.6419 31338.9561 27351.9384 35703.9221 17449.1387 16327.7629 28524.5650 17329.7809 58107.8999 29780.2265 41462.5718 16519.2115 22183.2384 24881.9881 18797.2579 40481.0936 34017076 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 70491.5263 53392.3414 19262.9255 35216.5700 5889.8943 28885.2333 22541.5537 8219.1101 30928.1960 31290.6527 28309.5940 1116658.0597 34951.4525 32216.5065 44357.1369 28611.0710 28611.0710 14242.4369 46960.3198 27995.7719 29372.5138 44947.3000 32065.0219 17542.5363 18352.7744 50034.5441 27308.7717 131390.0777 41166.0653 43801.6186 26864.2235 29210.7298 127259.1381 25562.4732 53371.6965 54019345 arsc Metal Homeostasis Arsenic Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 9256.4472 13038.7216 18107.6103 7737.6647 6670.3753 25458.1789 3118.9742 5038.3757 13209.2814 9206.3259 328575.4692 30421.2512 64768.4217 17135.4607 29566.9032 29566.9032 7620.5172 23200.6945 9911.0592 9014.4958 39842.5904 9587.9793 9954.2253 16692.8662 43716.2789 10378.5018 38375.7842 20829.8287 21817.5059 8807.1664 10754.4845 28709.0352 6318.5470 18861.8406 383705117 ppk Phosphorus Polyphosphate synthesis NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 41100.6002 33410.4204 19187.1989 26376.4638 11451.2439 15683.0960 25435.9413 10108.6562 25304.3860 25730.1308 22837.8164 467368.3122 37789.0141 33551.6363 21542.2510 36663.2237 36663.2237 14673.9457 28534.1587 18753.6204 20348.0017 21488.1053 16580.0454 15217.6915 13245.7306 22729.8599 15995.7880 57723.4157 20828.4080 33565.9176 16181.9653 15902.9761 40499.3398 13536.0960 21813.4577 77973060 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 8859.1738 155681.1666 8613.1882 92475.5879 14346.4857 16711.9732 21090.9414 11817.1763 13562.7699 11834.9192 211073.4006 11960.3133 12060.3669 10249.3374 65290.2534 65290.2534 8990.7321 24716.3186 12689.6944 13170.3436 8967.7994 7730.7120 7207.4127 7562.2071 15466.9265 14870.4567 36989.8476 17306.8113 19096.2192 6421.8000 9916.5419 8816.0598 10890.4752 18134.5711 262087477 cutinase Carbon Cycling Carbon degradation Cutin Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 208201.1982 50122.4559 133304.1506 83089.7924 62338.3154 23803.6822 43416.7698 227877.1185 39851.7391 35483.9404 55962.4335 58685.7658 2438739.9299 92374.1381 78274.5775 137639.4840 54110.9088 54110.9088 377828.2860 104315.2879 48176.2705 94337.2021 104182.5197 105641.6176 70254.6132 58859.1137 222783.7912 97527.5011 228619.6838 113066.3850 77578.7926 61858.4707 79867.4265 94073.0445 66659.4273 166445.2935 237880492 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 16371.4613 11664.7098 21835.1574 9155.2070 15852.4264 220254.0189 7443.3810 12956.3611 15269.6310 25216.2038 247044.9156 161724.6635 24287.0704 24273.4403 13485.2386 13485.2386 9657.1973 33996.9673 15937.6470 16449.5210 25381.7371 27929.1634 15081.5060 10781.7034 20099.2752 12064.0904 37026.5315 10448.9541 24019.3837 12747.2178 14170.4417 15217.2074 12412.8674 18225.7152 333480091 trze Organic Remediation Herbicides related compound NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 3491.4057 5838.5979 4541.1351 2312.9275 3185.1716 3402.3517 5010.3719 128007.4451 5761.9312 4398.9327 2665.6537 8409.7585 5143.4477 18307.5256 3811.2406 2775.2859 2756.2602 13519.8193 4940.4032 6590.7182 2610.0810 4245.7063 4273.2481 5517.3473 49134.8944 295110678 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum A2-162 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 7210.6344 3460.1915 365837806 atzb Organic Remediation Herbicides related compound NA Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 6154.8690 8336.6528 9699.5866 10143.2401 6178.8642 4633.4875 10953.8837 9042.6417 5090.1919 270191.8560 19140.8327 9493.7378 8622.2358 6231.8818 6231.8818 6462.8792 24542.4160 11388.6132 11175.3958 11875.7433 11946.7561 4815.6005 9246.7362 17458.6810 6640.4172 7173.1898 7500.2978 16063.7726 5641.4495 7543.5372 11409.0780 4741.2843 14950.1351 83952563 SoxB Sulfur Sulfur Oxidation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 7256.8944 6900.4438 9255.8663 7817.2513 6953.4723 5094.7017 7393.6290 8535.3873 13818.2436 143174.8423 7152.9110 9707.5965 6685.5060 7800.3178 7800.3178 4192.7181 17070.4353 9530.0568 22703.4151 43886.9622 6635.1191 7555.9216 6386.2020 12327.6611 8997.8016 27375.6135 10780.3133 11525.1378 4846.1699 8626.8527 10696.2796 5851.0383 13656.9403 73749260 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 4501.1474 4770.4793 2406.9730 4697.2725 16011.3826 3299.3031 7192.1913 3896.6260 106417.8623 24680.7971 4654.8441 2442.7059 2442.7059 4425.1017 10442.5352 6568.5945 3798.0425 5145.5065 5243.7417 3053.6803 10056.0278 9355.0661 6056.3741 6596.1551 3273.4866 19222.2686 4197.0708 3722.5106 9741.6615 16604298 pcpc Organic Remediation Herbicides related compound NA Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6214.7686 4379.5031 3425.5972 2732.5035 7055.7130 10916.5923 3065.0103 112809.2495 9873.1051 11671.5782 6919.3712 4781.5582 4781.5582 4250.8780 16025.0999 4704.4357 5803.0556 10546.8562 3865.6957 7231.7445 7638.1068 4929.7338 14980.0285 19084.3335 11809.8479 4302.7956 7899.4770 10075.0990 5377.2504 48460.1149 239905105 b_lactamase Virulence Antibiotic resistance Degradation Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 5876.8867 48278.9925 5937.4214 7871.3027 4172.6359 6478.8687 9822.3662 47398.4037 20039.6479 5100.5391 3059.9169 374613240 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 13285.1165 232825.8665 28988.0381 12267.7780 4326.6653 2190.9840 3280.7167 4218.6451 2586.3528 122920.4615 4812.9840 3999.0770 4027.3247 3123.6612 3123.6612 7692.6959 18626.3952 8265.6011 3685.8964 4180.1334 4903.5369 2751.0580 7191.6763 11263.3678 3217.4961 15285.6961 5459.2711 10402.8777 4431.9861 8921.5852 5244.1883 3402.4765 6355.2762 315412120 mannanase Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 138360.4444 35979.5256 51402.4835 48552.5216 5800.3299 135523.9102 100941.0863 85055.9333 93959.8686 74761.8533 103708.9445 1203599.3664 39686.4731 62910.3275 224923.1860 95843.5129 95843.5129 63112.7382 96925.2175 71214.8733 199560.3685 123784.2141 119571.6671 132692.6387 88821.2464 92214.2298 70692.5278 167827.5340 158452.5313 95905.4170 37156.6262 65257.0320 79073.5104 60527.8648 123150.9474 373555274 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 51259.5852 23160.1108 25722.4883 57035.4958 74309.6688 22606.7221 53796.5220 59706.1185 27577.3360 43284.4909 48761.6610 59489.7175 858517.7600 56093.7375 44195.2578 60895.4414 41161.3419 41161.3419 42782.5788 67156.7695 48420.1229 59502.2997 98676.1563 95430.8828 29488.2239 24380.3777 71378.3793 41619.0502 126130.2413 71629.8161 107457.5897 27965.0981 44035.4517 82184.2282 34208.1203 63500.7911 226940360 tehb Metal Homeostasis Tellurium Detoxification Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 10927.1014 35659.3748 6177.2479 41487.4281 6549.8102 28636.7626 6894.8812 3442.2544 8165.6598 13266.7691 6717.6947 192732.5673 7489.5867 14394.1221 7205.3621 6433.8860 6433.8860 7298.8000 23691.6576 16940.7706 9786.6117 15999.6909 15690.8672 10283.6510 12890.2623 17082.4944 9519.4051 28876.1420 18133.3210 15859.2522 6205.3911 16035.8160 8773.5829 7390.2456 26278.8327 257065176 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 10980.1864 36150.0986 8545.1384 18712.8458 3538.5569 4710.8249 3906.5244 3853.6154 10819.1115 2850.8498 144156.6016 5890.5798 10988.2323 5156.4431 5307.7997 5307.7997 2877.4989 14492.7356 8487.4723 8458.5783 8287.6599 5951.2584 10183.7467 4150.3883 14472.9850 67516.4465 11073.8373 6831.2720 5313.1644 5274.2671 4083.0250 8976.3805 151422300 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 11084.8305 16219.4796 8312.3653 5208.1189 2466.8019 4710.6981 14333.8254 18160.6488 6450.3467 15613.9231 22573.0090 11303.9167 11303.9167 64122.1787 15617.6288 11847.9967 18587.7996 7530.7992 26795.0126 5706.2461 6741.4981 9990.1886 7239.0570 20686.3750 21039.3018 9966.8853 7693.2931 8201.5462 8324.7433 2915.1174 8831.2359 323365852 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 7740.3230 19838.4572 12351.0866 26949.1008 9622.3145 11861.1327 18830.4521 4862.7116 11627.4714 9312.0722 7666.5087 269764.7508 18266.8561 15179.7849 23937.1063 13473.7770 13473.7770 9493.0191 22440.7924 13540.0416 11942.9344 16936.1253 18535.7296 7653.9371 8475.0526 17079.2243 5261.7065 20828.8492 6726.8826 15196.8784 5931.6709 17283.3630 10862.7317 5332.7890 13512.1845 56695899 SoxC Sulfur Sulfur Oxidation NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 191660.3335 77167.5934 89950.3888 161096.3223 274578.9017 182588.8896 149894.9240 347375.6256 75597.1837 308933.5993 128467.9712 272589.2415 3065135.4313 227935.1821 254013.2378 561577.1681 296175.0542 296175.0542 107495.3943 235891.9171 73452.5843 82353.1767 260063.6537 593435.4152 246027.9116 113213.1927 384425.3835 139126.6205 585427.7184 195400.1956 200551.5548 83061.3193 135924.8156 212198.4362 60907.8559 89140.0172 110679773 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 16162.5327 358520.4078 6953.7037 8918.1014 32113.9915 22084.3833 9890.4909 6542.1102 4188.8667 11140.2939 11833.1032 14084.4224 273564.9946 10370.5762 19385.9614 16214.8602 22824.3517 22824.3517 10377.8757 19522.1654 17916.9246 9301.3098 11876.7331 14394.2462 22664.5775 7186.2599 19223.8093 5029.2047 32901.3883 27028.3246 21166.5475 9825.0986 13001.2915 25853.2506 6237.3183 13083.4255 377559541 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 12357.1196 5653.9438 9861.9038 4342.4333 3880.3282 3061.4858 8028.9622 15761.0883 9147.4144 123398.8178 6694.8378 11186.0109 5216.3747 10252.7912 10252.7912 7433.9985 23259.8714 7378.2139 14282.4208 26791.7701 15901.9734 32545.2540 11725.5920 36360.2205 6479.4050 20420.3730 8613.9188 14754.7485 4506.6327 12673.8785 9626.4108 9794.5635 14648.8344 160917478 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5058.1933 8703.4423 3711.0195 4264.1029 6365.1891 6315.5717 1916.1468 2744.2185 3780.1650 2161.1884 32698489 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 17748.9816 14194.1528 15422.6553 27488.6226 12254.3697 10546.0575 10858.6824 6109.3225 10131.1639 20831.4699 15050.8363 166684.3267 16679.4427 24063.7977 30692.1580 10616.2707 10616.2707 6090.0538 19364.0858 13299.5338 30335.6535 14571.5514 19658.2672 21117.0275 16687.8388 24236.1005 11790.1701 39592.4101 35103.0099 19879.4944 13191.5992 16962.6780 11837.2577 10244.9132 16212.5300 151280650 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6630.3198 2710479.3303 746558.0233 2666.4060 26883.4371 5339.7014 370137.6653 7462.6454 7462.6454 7070.1861 9591.8256 10774.1660 6328.2571 3705.6199 9681.3494 4858.6184 6475.0567 130981.0642 307633456 ppx Phosphorus Polyphosphate degradation NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 7443.2250 6944.8665 12563.7088 44709.9513 7469.3541 4728.5085 6321.0615 4859.9041 8674.2254 4691.9207 121986.5022 8136.6954 7230.9277 25977.3343 4756.6308 4756.6308 12320.3102 9790.3715 14684.6910 5526.0788 5547.3280 12500.7650 3428.1109 6794.9074 17960.9276 3545.0616 20213.6177 16890.9483 17847.5106 7005.1001 6494.5090 7742.4300 4449.4792 8898.4162 77378687 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4673.3236 6524.5939 2597.4361 15841.3673 8088.6269 4692.1544 4692.1544 3727.6896 71735592 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 543463.3301 182287.2468 20127.6871 98879.4949 76898.0920 51573.5367 53548.2328 25221.2035 123004.1338 43939.6129 62832.7323 721991.3057 51184.9267 31938.5883 117282.4748 89074.0185 89074.0185 98913.0315 49370.5140 27001.9419 29714.0750 118845.7810 45742.5983 70212.7571 70618.4078 106188.2056 79135.3797 927366.3536 45248.9723 79944.8715 28231.2671 52769.7434 88409.8817 72126.5545 25805.1128 398789046 vgb Virulence Antibiotic resistance Degradation Streptomyces auratus AGR0001 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces auratus; 797525.9291 5806.8873 6143.7906 7635.4901 8172.9236 10282.2916 11137.3470 2560.4051 9787.1845 10626.6765 10932.7852 299217.7456 21680.7044 12832.4577 20141.0038 15275.3864 15275.3864 10506.5849 21281.7566 15698.9734 11207.3867 19294.9601 11904.6085 4896.1964 8822.5539 25515.6942 18299.4726 22167.5689 27665.6386 200561.1912 7696.1602 17566.0050 18278.5755 7058.0122 16254.1204 373550441 xyla Carbon Cycling Carbon degradation Hemicellulose Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 18545.8871 13003.3590 10281.3630 21898.8716 6550.6898 6647.7081 45137.9801 5241.1441 11915.3722 21022.1353 9601.4960 210852.0407 11163.1997 15942.8820 28103.5820 13256.1229 13256.1229 7850.9485 18375.6762 8614.5656 14108.9948 9220.8602 6330.5445 8354.1158 8574.8301 11826.8278 6914.8728 60931.9188 13492.7384 11259.8470 4881.3036 10920.2909 7889.4111 3969.3869 9609.1079 386001204 mcra Carbon Cycling Methane Methanogenesis Methanosaeta harundinacea 6Ac superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 20259.5165 15490.6951 24501.4855 28116.8029 7045.9167 18171.1619 19200.7465 10485.8718 21561.4021 35182.3180 16498.5101 363252.5719 28758.3656 34110.2058 29864.6550 20387.6873 20387.6873 16914.7521 35151.0538 28649.9179 57387.2243 47207.3377 52900.1926 13593.6226 15681.6152 35092.1928 12530.3003 69693.3894 29256.1580 41038.4744 15826.3866 17441.4098 19732.8410 11408.8458 47803.8933 168997439 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 79097.1161 104131.1930 1256814.2695 52064.4697 9803.6222 362775.0683 99589.1917 39757.0476 46876.8002 62864.3731 100806.4514 785407.2569 131038.2727 84291.2145 114383.9486 173739.4160 173739.4160 40624.8973 101039.5371 85200.1948 45266.5052 66488.0647 1133536.4149 38514.7003 61779.8523 47286.7001 58103.1816 184928.5590 91078.2916 85992.6243 60082.0069 75297.9547 99590.3994 34362.7588 88214.4790 121553331 urec Nitrogen Ammonification NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 51574.5921 13297.4974 8285.2375 15411.2259 103756.4348 8886.1993 17713.8958 11447.9019 31862.0423 31186.8121 14666.3265 373161.0314 16417.3827 17669.6330 17160.8995 14075.8812 14075.8812 23680.8163 61339.4973 13931.3150 16224.7534 56757.7559 14635.6790 38264.3861 20183.7987 33721.8737 18978.9512 330228.5705 36948.9268 121306.4951 12045.3710 40504.6632 24468.5174 11056.2150 34976.1018 214037081 tktA Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13969.3890 5769.2345 11567.4785 2212.0876 16485.6632 14981.9520 5261.8624 5261.8624 7237.5637 4598.1818 6838.8427 3732.0712 3652.5588 17930.4990 10247.5629 7398.4917 2420.5914 3813.5950 5845.7731 4007.9643 14122.3016 126218145 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 5819.5044 1903048.4982 513461.0857 15916.3857 2660.5553 9480.5256 72265.9128 3582.9559 89533.5296 4797.3975 8009.5174 18406.9295 3036.6092 3036.6092 3368.6321 9272.9070 7011.3590 8273.4591 6119.9332 5018.4105 2603.8257 3538.1937 7777.6324 3467.0588 9026.8176 7235.3521 7574.2077 5027.6218 4935.9050 4794.1715 3262.1780 24405.9453 151208 endoglucanase Carbon Cycling Carbon degradation Cellulose Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 37773.3065 196570.5214 9723.6300 22869.6182 29306.5663 6701.5202 5228.1837 4933.5430 12860.5233 16648.9597 13198.9535 85272.1539 14036.4725 13347.9955 12974.4489 7702.0193 7702.0193 18385.5273 18341.5116 10704.3315 49302.4906 14685.5206 12529.7333 15283.3265 13706.5609 12469.4580 7290.4594 29423.0868 13336.3526 16576.0710 15498.0370 14361.6801 27050.3417 8484.2795 14810.7513 321165351 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 12392.5539 5301.1809 17571.7954 10050.7260 12115.0640 4670.8146 16293.6971 15934.2389 14425.0183 1514696.4651 7673.1577 8183.3205 31127.0222 34351.1176 34351.1176 12223.2400 27849.2263 18437.4014 20482.1066 44664.2639 20938.3378 16107.3029 17298.2748 43801.0693 11418.4401 44542.2690 19349.6647 14182.7637 6587.1549 16737.6848 21123.8514 14794.1124 67404.4225 325168944 arsc Metal Homeostasis Arsenic Detoxification Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 1028592.2665 3154.5027 3977.4603 3611.1333 62810.5477 6954.0836 7965.6518 6337.0739 3318.1166 3318.1166 3117.9286 7318.7322 5575.2939 8947.1996 4125.0815 4575.2422 2843.4431 7030.8793 3046.2300 17627.8485 42793.3445 10528.5682 4216.4630 4786.7822 6120.8527 3222.4096 347547659 amyA Carbon Cycling Carbon degradation Starch Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 11313.6859 5722.4436 7936.0503 19715.1951 4408.7014 8762.4622 5689.7257 12025.9270 115710.6009 11013.0044 6667.8250 6761.2699 7610.6910 7610.6910 3848.4302 20296.3195 10948.0764 6233.3944 11841.7618 5878.0461 6326.5732 8071.3802 9827.0063 5858.3884 20898.0868 8314.3526 12091.0497 5150.1358 7160.9681 11460.7054 3488.6061 8723.1813 50120536 arsc Metal Homeostasis Arsenic Detoxification Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7634.0972 10177.4718 5527.6404 9993.5538 3567.6705 4579.6995 17970.0157 159203.0572 7358.5241 5396.4973 8858.9773 5635.7579 5635.7579 7958.2071 5997.2472 10246.5991 2278.7500 3127.9865 14709.6309 11047.4461 9436.7333 4871.6171 7583.7083 11294.2594 3058.5073 5914.1595 5272.6507 29007.5806 217407544 actin_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 45876.8697 154757.7363 13458.5134 12410.4547 6075.6165 23257.9400 7228.0681 8245.3646 21423.0976 38391.0583 281857.5011 10088.7054 12469.2413 24973.3520 9775.4161 9775.4161 7384.7263 33555.0558 11293.0120 19724.4020 38151.7931 12911.6672 17583.9797 21495.8450 12847.1397 13757.5222 64089.2354 11002.9644 19125.0678 7451.6252 12779.8487 15766.9319 7284.1040 16118.6602 302426168 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 543439.8816 12348.6162 333648.2149 303965.5643 234103.5460 67597.3109 125211.9131 260832.2161 264943.0324 125075.6880 240844.5162 224529.0937 6891957.7622 306512.1910 216361.4336 354742.1785 275582.3238 275582.3238 177298.2954 559974.4773 131888.1291 289230.4506 430940.0480 176082.8256 184457.2794 146409.9403 424553.0786 183615.6620 419579.8610 167859.2472 282327.9291 148450.3460 238914.6885 258445.3888 136309.6020 247387.6599 254241317 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 14188.3275 9840.1264 7147.6958 5469.1204 3630.3158 8233.3547 6777.4809 4628.4478 7088.2243 13149.1111 177662.8397 6138.9700 7896.7445 8012.1387 4868.4391 4868.4391 5091.6540 13803.4625 8452.6564 6641.0308 12404.8566 9710.3831 4051.4278 7047.5661 8361.8591 7431.7749 14070.8702 7620.4033 11928.5701 6747.9703 6705.3807 12700.6223 5518.2977 10398.2654 14195701 gdh Nitrogen Ammonification NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10829.0484 5954.5210 8938.9799 8058.9383 21202.4216 6544.7543 14719.6034 120733.6453 8746.2366 157972.7682 13588.3025 8690.6998 7303.1709 19224.3110 19224.3110 6725.6614 16004.2274 9719.7500 10181.7965 140951.6961 17501.6387 5007.1568 6560.1351 8680.5736 9247.9118 44370.4921 16737.6734 23919.5655 6762.7140 10509.7846 10878.0116 6783.1096 12118.2005 88863099 ppx Phosphorus Polyphosphate degradation NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 149623.2317 12587.6300 23132.5013 10000.7637 6806.7600 8082.8874 12046.5446 10453.2562 11650.8784 15302.0318 9745.9798 299436.6966 20826.3287 14613.8723 17649.2483 9490.1741 9490.1741 15688.0533 19931.4165 13141.9816 22546.0015 19888.9301 27714.6962 8590.8052 11536.7294 21901.5529 13082.5905 94660.8582 22258.4135 29800.5583 10107.4397 16986.4219 18110.8829 12630.7559 31557.6043 295794764 pgk Carbon Cycling Carbon fixation Calvin cycle Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 3963.0126 23669.7343 10089.6821 2404.5170 4875.2462 4842.4552 4842.4552 20793.4195 3191.2474 11403.5218 8589.5350 3410.7968 300692361 nhh Organic Remediation Aromatics Nitoaromatics Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 16843.3380 21122.6078 12976.1258 18396.1469 24908.1404 8796.9800 17317.2316 12388.3380 9004.1309 13805.1326 16619.7496 11650.6963 392296.2237 15363.5734 20304.3077 15085.3725 9465.0373 9465.0373 10400.9241 29208.6997 19637.6198 22366.4316 24887.5853 27683.8968 8452.7767 11342.0497 26155.2837 6594.5682 36968.3970 42005.0169 20923.2479 9007.0468 17411.5256 16023.7636 9543.5723 17144.8974 329568680 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 15089.3418 2817.2646 2817.2646 373524451 acc_arch Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 285848.3226 9637.0405 18127.2391 12685.7349 3963.6039 10195.2171 2723.7047 8108.4314 91071.3682 8737.8917 195931.7830 12878.1262 68195.2311 11436.0799 14869.2228 14869.2228 27563.4535 221940.9571 18203.8862 31341.2211 293102.5861 9078.6657 4120.3317 10090.8700 39731.9356 25398.2892 45152.4959 19739.7275 37476.2886 7666.2809 22198.5936 56057.5729 14967.8543 18341.9101 78484530 tehb Metal Homeostasis Tellurium Detoxification Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 6173.0440 3677.5509 4273.5568 2343.6121 2343.6121 9275.5008 5054.7034 7943.5056 9160.7497 5928.1221 3131.1931 3109.1650 3112.5651 3391.4237 5845.6308 259169713 terc Metal Homeostasis Tellurium Detoxification Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 14662.1084 5493.2735 12731.4927 32720.1406 6767.4246 9864.3097 11643.1933 18997.6562 10902.5225 15124.3051 7876.1099 368322.8888 16867.0558 20687.2706 36153.9198 17294.1100 17294.1100 8505.5860 20480.4130 17103.9165 9258.1474 12405.0995 14314.8453 6371.8732 9688.8182 26727.1262 5732.6045 29674.5448 20366.4657 26015.8694 9455.3439 11224.7161 10774.8359 7484.2893 17015.0954 373555276 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5212.2473 17155.9465 3758.8864 3540.0146 3654.1603 3654.1603 11350.7830 5410.3326 2738.5705 29682.8054 3181.5616 7545.7254 6801.8890 7420.2662 3996.3979 5891.1843 4918.6005 58038978 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 5764.1949 2320.9856 76412.6159 3474.8342 3237.9408 2666.1715 5159.6369 3142.8705 3904.7048 6232.5945 5379.8251 7863.1412 1928.3500 2898.7906 5768.4155 357585594 amyA Carbon Cycling Carbon degradation Starch Streptococcus macacae NCTC 11558 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macacae; 4954.8122 4369.4693 4936.8764 2845.7861 4892.7973 1934.7489 3261.3326 4310.8548 6630.8711 29341468 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 7375.4534 14459.4679 4302.6333 17893.9977 8777.8627 3566.2262 9446.5816 7308.8646 4594.2009 11151.8970 4872.1448 286840.2898 35061.1934 14916.1672 34839.2524 16262.2615 16262.2615 8385.4894 15333.8328 10303.1849 6493.5130 6839.3787 4783.7590 9289.2828 19677.7472 2956.1274 28604.0101 15865.8040 29156.8226 3822.2616 14185.6473 10790.7357 2588.5585 5792.4551 91807148 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9771.7042 943819.1904 237690.9474 14469.9366 10943.6510 9857.5856 9738.0493 37784.9690 15489.7623 17566.0182 7921.9555 421572.6926 259402.1566 9905.1019 7091.5748 8698.2687 8698.2687 8999.4060 24725.5331 13423.6554 18757.9686 12296.4450 13456.9583 7220.8693 7374.4085 18202.8464 9166.0231 30366.8707 13488.3013 17175.7597 19178.2570 11270.5644 16251.6269 10668.9071 37419.3561 284390204 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8798.5158 6016.9271 13732.5453 2342.6923 27773.9713 7378.9123 15316.4464 8167.8252 15466.0415 130950.9840 8445.4478 15206.5752 10724.5390 10042.1715 10042.1715 5962.0441 14393.1937 8167.7354 5046.5045 8544.5378 23443.5982 4201.7266 7980.9423 20782.3244 7800.6697 21391.0592 10061.0420 19306.8825 9203.7784 3797.4998 5292.0051 4752.8764 8648.1490 330818496 arsc Metal Homeostasis Arsenic Detoxification Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 10906.7246 8678.0946 5535.6282 11124.6735 3553.7785 8859.7101 5258.8041 12404.5964 16446.6999 10359.9682 266887.1525 19795.4493 17674.4425 8719.3751 8014.4808 8014.4808 8195.2052 19761.2771 28799.0418 9083.3479 12499.1575 13121.8263 14461.9744 12980.3043 16913.0032 16268.2140 25305.5440 22182.1213 18559.4134 7037.7347 19319.5247 12230.5970 5080.9020 7513.3093 258569445 endochitinase Carbon Cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8624.2543 15136.6135 12173.5563 4335.5082 9202.7608 2387.1952 15010.6813 5239.9037 3922.4212 4731.1430 82342.7462 4286.5015 3286.8040 2295.9478 2295.9478 2681.6320 6081.7021 4228.7998 9875.8777 5295.1375 4207.7336 4021.5860 2995.0106 9480.2992 5515.2217 6702.5938 4633.4008 4774.4940 4807.8649 4776.3281 398126307 cmci Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7947.8907 7065.4792 8533.1151 3010.4571 17804.3187 4106.5103 19378.7723 3339.5192 172546.3308 6917.2982 5766.8868 7574.9353 6084.3448 6084.3448 6112.5883 13083.2437 6036.9877 9216.4865 10452.6288 7370.2860 41793.2851 3528.8854 6345.3846 4109.4847 13890.7355 9067.1445 11571.1864 5109.6675 6049.6129 9964.7019 3594.9738 7728.3328 359400716 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 4544.4944 5410.2385 4015.2490 3649.9626 61664.7539 25157.1374 4625.0886 8214.2758 5404.1260 9051.0916 4215.8361 3110.9671 154508931 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 5011.3780 11442.0673 14036.8185 9046.2791 4582.8054 4411.1483 4122.3119 3262.6254 5618.3913 2940.3633 81841.5565 4980.2088 4579.2063 4699.4868 3087.7441 3087.7441 3351.0963 10355.8736 6288.1029 4576.2234 4674.0782 8042.8721 3412.5586 12471.8207 5177.1600 13384.4952 9984.9221 8790.0634 3640.1942 7910.6133 3469.9440 3521.5606 6510.6822 34850706 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Penicillium variabile superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 19794.2515 189574.7643 8210.3732 7914.6618 46206.4916 14604.8581 9615.7930 8656.7150 8317.8185 6788.1442 20493.3968 8825.0257 10236.7814 14501.5575 21738.1240 27845.4793 8244.0244 8244.0244 12024.4767 26789.9235 23421.8265 37461.3607 16376.7020 17920.7714 15213.7939 12313.6437 22035.5058 7252.7450 29026.4510 17775.1739 22111.1914 9065.6615 11666.0569 16140.5555 8390.8827 11048.7375 56798757 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 31388.3682 13564.2871 30287.7484 38289.7764 47446.1924 9587.0423 17776.5914 25652.7091 22868.1190 25636.1392 93674.3780 28730.5179 711166.7303 48603.7303 27247.8536 34999.6669 21908.7931 21908.7931 25792.6424 63669.9474 31031.0921 28542.1033 74976.9350 46788.1300 23230.6876 19763.0298 101896.7213 25760.9049 524000.4132 31919.3551 44169.0702 63585.9978 47675.8302 47829.6702 17376.8958 35947.2511 142189 dsra Sulfur sulfite reduction NA Archaeoglobus fulgidus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 5311.0906 6191.0255 3446.6625 7957.1569 6448.9888 145645.7422 6630.5317 4728.5583 2787.8253 2787.8253 8812.0201 12255.7310 8902.1228 7022.6976 8564.5509 14190.9540 3340.9923 6009.4340 9992.0393 2951.8659 17610.0884 8884.3198 11254.1624 4153.7719 10931.2156 6737.0228 3352.9080 11506.6256 340525314 atzb Organic Remediation Herbicides related compound NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 386623.1864 20716.7499 203295.6791 84098.8397 874729.8418 76099.1310 105354.7640 155624.7672 141949.1082 271842.4118 221121.2685 104292.1479 2965413.3824 467903.0552 168523.8902 243193.1003 112900.5618 112900.5618 477104.5609 168713.6270 99775.4189 226224.6151 213980.6255 476270.5312 172380.0780 121185.8960 163915.0987 105800.1808 551475.7452 313752.4959 159410.2233 178057.3136 118190.1551 161145.7665 109569.9345 379204.5153 44829113 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25835.6461 14169.5103 8744.6785 3377.1813 10807.6123 25464.4845 39443.3637 180755.1693 18679.5637 13098.1883 29515.3717 21286.7600 21286.7600 10120.9517 27625.4836 15281.5508 8178.4854 11245.8798 6632.6333 15099.7770 23427.4248 11908.9122 10431.0437 71632.9110 19341.5085 16305.5291 4950.9868 13077.5558 23112.6431 24036.2022 9724.5098 146338646 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 72893.5772 123286.1818 253797.4508 17651.1632 9011.6800 64266.8390 24794.8384 147806.5975 81130.5373 45258.6938 45994.4530 942305.2512 42189.6001 80088.6365 22383.8161 37445.1099 37445.1099 34906.2088 155379.6998 56258.5832 73477.9785 70900.1194 290840.4121 63767.7686 48811.8367 68468.4167 52306.4900 141033.4176 80016.9524 50063.0232 28452.8406 39410.3225 42364.9568 120631.8940 426386.7347 62184245 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium dahliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium; 12974.0112 5890.7949 85683.3290 203843.8365 385730.3187 67061.1590 144968.5656 4831.2985 38694.7768 51257.7545 20398.4615 417854.2087 65986.1305 67358.0077 51028.9822 51711.6104 51711.6104 29459.1987 64993.1551 87470.6792 26120.0735 16324.8559 19025.8776 13800.8086 36927.8133 150669.4439 19212.8475 192841.2804 94553.8497 133900.0983 44882.8762 48965.2991 68461.0005 17525.1178 30667.7101 400333786 linb Organic Remediation Pesticides related compound NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 70697.8437 15055.3997 86673.2873 9855.5021 5824.7351 9610.5350 17607.6913 8134.1856 20304.7506 33004.0395 20413.5999 212577.8049 33114.2344 24382.1759 80351.3274 13229.9391 13229.9391 9390.9867 23093.4021 29845.5833 41553.4375 42220.6417 14241.9574 12341.8818 12699.2393 29501.0675 45968.7200 35453.5205 26285.0277 34509.4821 10526.5336 18243.2121 17310.7111 16266.9810 30647.8909 207084231 ppx Phosphorus Polyphosphate degradation NA Campylobacterales bacterium GD 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales; 5765.8873 404215802 pcag Organic Remediation Aromatics Other aromatics Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 127554.6621 81758.3670 191657.8183 276622.6144 395722.2497 11612.5165 34755.5333 22649.7088 20463.8195 56100.0499 39581.6787 50161.2321 2813920.2291 69114.2219 80121.6623 100629.2360 110632.6457 110632.6457 32305.4097 79846.0377 43275.2799 57924.1539 58467.8987 39090.2943 40568.0896 38497.0017 43608.3757 58877.3688 182094.9824 75303.6080 73667.0204 19963.4362 39227.4925 47375.8568 30130.8914 186348.2900 359462814 nitrilase Organic Remediation Aromatics Other aromatics Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 6350.2905 12106.4926 7219.4919 4540.3077 3772.8910 2553.5033 6626.6273 3803.8519 128926.5309 4328.7586 6397.1908 6391.8144 2584.8614 2584.8614 5335.2173 14123.6043 7723.8524 5456.3520 10279.2839 12493.1518 3782.6306 4153.7027 11894.2882 47946.8230 13641.6903 5174.8392 9947.7333 3176.7897 3844.0206 5909.6289 3396.6577 6830.9758 3089607 amyA Carbon Cycling Carbon degradation Starch Thermus sp. IM6501 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 3904.5735 4685.0250 2269.8032 3061.5738 66894.2533 6519.4720 1835.4898 1835.4898 3743.4521 4052.6001 2400.3639 7116.0562 2166.4708 5792.8628 255021042 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 41450.7966 13259.4405 39051.8056 17442.1516 23260.1375 14056.5514 16200.8106 19256.7985 10700.4180 35427.7015 24367.5454 11941.5223 677394.5784 31463.4763 26286.1909 17620.7797 16131.7484 16131.7484 17066.4640 34965.8170 21681.9803 22485.5939 44628.9278 50040.8000 13983.5926 16569.6740 31563.3855 13126.4040 273748.8708 12319.0370 41255.9341 12434.0726 25147.1613 16635.7997 10987.9516 31613.3371 326693581 ppx Phosphorus Polyphosphate degradation NA Leuconostoc argentinum KCTC 3773 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 4958.0785 12581.2189 2715.7849 4109.8534 4479.7990 3804.1348 4067.6246 2845.2739 2845.2739 4573.4559 4174.9278 7913.9631 3016.9955 2949.6860 6004.7266 2609.6313 9010.6658 4546.5436 7907.3381 2067.9828 10068.4012 3281.3010 3299.0395 7077.3632 388255830 nirb Nitrogen Assimilatory N reduction NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 47132.7070 24817.4183 73452.4996 193094.1184 23867.0749 4780.0709 111550.3372 42890.5140 26053.3661 18129.5298 87587.8016 47491.0815 988430.9914 20565.7745 461793.0858 41871.9332 28624.2850 28624.2850 36288.4726 77203.0609 18060.7075 30917.6602 111344.7074 13738.7057 27977.9301 37079.1108 29188.9488 39230.9700 143330.8027 45916.0087 93252.1174 16992.7038 106255.2142 49478.5127 43563.8375 296473.3903 327395250 cmci Organic Remediation Aromatics Other aromatics Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 6048.2255 4982.6736 7144.2760 7982.4131 12173.1160 2225.4177 3309.0301 3841.2829 10222.9002 139321.1923 3798.4471 15779.3459 5777.2245 2777.8925 2777.8925 5584.9039 12867.0124 5777.2543 3562.2666 5913.7761 4465.2775 8185.5345 4143.9031 8883.5670 6368.7951 11301.9067 4668.8259 4669.2579 14816.0258 2231.9869 7334.9638 260422773 phn Organic Remediation Herbicides related compound NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 6503.4484 5439.6282 5884.5742 8256.5175 9028.7383 5820.9510 7956.0764 7754.4340 209133.4635 38847.5026 7976.5333 6606.2698 3996.2012 3996.2012 7042.6558 17495.9213 8305.7723 10952.7975 12799.1372 9940.4648 5185.4278 9510.5209 10497.4360 15455.3087 16949.2056 21601.5712 18485.4788 7728.3080 19620.0041 13277.9693 8762.3098 14395.2385 371765139 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lachnospiraceae bacterium oral taxon 082 str. F0431 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae bacterium oral taxon 082; 9712.9038 5990.8716 6195.2210 3858.7562 3146.3374 7251.4859 10296.7577 4125.9729 193089.0265 8242.9033 8568.1948 10543.8060 2981.6947 2981.6947 4174.2208 14704.3357 7420.6700 6577.9383 12431.3094 10353.2237 4307.3459 5186.1538 10130.8808 8394.5633 18214.4381 7274.5613 11889.6029 5007.9285 5816.1523 5791.5120 6635.3848 14246.7313 339048458 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6701.9076 3879.5827 455297.0544 7156.4602 4231.5751 4357.4575 3137.0412 6290.0608 4914.0171 2468.6294 2883.1397 4224.0945 383821536 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 101181.3380 24994.2813 44387.4867 60973.7423 92881.2964 29363.4655 30028.7332 24268.3617 31647.3208 44055.9043 59936.7544 22537.7286 742200.9432 35257.8416 44365.1444 65255.1726 37678.1298 37678.1298 17391.7164 85640.7111 30259.1144 46036.6487 36719.2401 774692.5839 21720.2182 21712.5918 55899.5060 23540.6879 79027.2025 31190.9600 68441.2894 18878.0143 27863.8212 33003.1059 19727.2468 52759.0765 83316810 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6716.7443 5450.9927 3962.3262 3768.1309 3002.3830 2975.7909 7535.6806 4475.9387 116089.5389 6524.2717 7274.2154 3216.9365 3216.9365 5720.8712 12543.8148 10378.8365 8050.0470 10857.0166 10540.4598 3780.0757 3767.1658 7837.4300 4929.1856 15924.5813 8831.8910 9358.2266 3615.2711 5626.4521 6540.9753 5078.4952 19322.2845 119955739 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 340240.8759 7532.5486 18354.4868 11375.0981 20958.3523 10953.7104 19347.8144 27463.6091 22775.8544 633230.8155 28922.2281 24870.5705 45484.5643 18488.8122 18488.8122 82114.6908 77870.5339 22956.7549 21590.8742 58560.6980 24054.8998 10946.0826 24618.6186 44405.6545 33673.9324 62925.2403 36133.7960 43507.1151 14688.4662 19397.1020 50457.7229 17347.4314 31967.8765 149783065 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18896.5001 7481.2245 2390.2014 9175.6577 4407.4380 4071.9612 9086.0153 22121.3989 1046345.1218 6712.7309 6304.8747 7934.6274 20072.1537 20072.1537 7674.7142 16519.1009 6524.0630 4697.9717 12579.1430 7842.5061 3761.6822 7876.1418 14383.1714 8355.0897 12178.4415 8036.3241 27736.9656 7906.8141 7497.1510 9615.3063 17855.4071 8852.8398 356478422 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 22839.2730 28229.8834 45688.9725 7491.4734 8422.0885 9790.9159 17489.4597 11712.8153 47473.3411 26586.5395 185667.9090 120218.4396 14249.2679 147145.4567 20761.9642 20761.9642 11480.8469 33403.6063 53519.1726 86312.5198 37382.6237 16786.0554 21025.0754 19484.0146 28932.4556 26703.5160 52711.9972 33969.0416 93944.4488 9941.6183 40573.2574 13705.1923 16653.2779 130437.4624 302693302 glucoamylase Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 6546.3880 1977.5094 3407.1377 3600.7307 3021.5891 3639.5498 51132.3975 51132.3975 3522.2777 11193.8697 4696.2091 13464.5351 6319.4519 2644.0783 2888.2975 9679.4435 12439.9763 4090.4063 6254.9466 3271.0992 5005.9967 3958.4332 3820.9853 149186135 linc Organic Remediation Pesticides related compound NA Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 75445.3240 19546.2750 54369.2569 108726.0362 51077.5952 27920.9772 54182.3105 50166.9125 31568.3281 57980.4344 78281.7710 36368.7877 1192502.5252 69005.2330 63671.4727 60376.4045 46505.7380 46505.7380 42440.5651 63576.3396 39271.3550 48816.9705 60341.3273 67513.4545 26837.9340 28819.1836 69389.6529 26404.1122 83965.9242 40789.8743 106854.6429 44962.5189 37588.9777 96126.7793 28833.5064 88310.2418 91690173 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 107973.7215 11114.6350 4691.2860 3845.4719 2818.0547 14696.8036 5451.6891 5013.8595 403404393 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 5927.5501 7016.2206 3513.9095 3143.3639 2360.9820 3682.4712 6090.8198 2564.9635 5115.3788 5390.9255 2542.2425 2542.2425 7388.0421 7470.2090 5066.0543 5666.3870 4245.9357 3805.1093 10174.2560 7084.4668 3212.9022 21931.3824 6214.3617 7178.6201 4098.2305 8862.4612 2970.2145 3639.6108 5856.4236 220723824 pme_Cdeg Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 41628.7834 22281.4224 10742.8640 8139.0653 7736.8541 27506.5089 12898.4378 19988.8965 47006.3955 39876.3094 393894.8948 27309.8335 38406.8813 119965.3032 20334.1409 20334.1409 13875.7949 27574.1336 26411.4813 184182.0193 28334.9709 65868.9070 8808.8655 14914.7810 40840.4815 18616.3040 71160.7829 6835.7799 37955.7979 21076.1889 22946.4690 33363.3074 11067.9433 21906.6609 76164629 pula Carbon Cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 4415.6836 4848.5742 4174.2696 87969.0271 5585.4340 6938.6428 7441.5783 9031.4416 9031.4416 3812.9203 5676.0061 4271.5661 8331.9557 3605.7802 6048.3504 2613.4202 8966.4461 4417.5367 7905.6843 1970.1270 4158.1987 3106.1712 2701.9529 262182603 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 6949.5692 16457.2549 26646.6388 5504.8282 4003.8108 4100.8348 6204.3477 6260.0988 3209.0011 126491.7909 9789.2117 6969.7302 4245.3971 2718.7265 2718.7265 4185.9209 13097.9850 7073.8584 6233.0247 7666.4064 5597.6188 2935.4965 4830.4465 12744.6839 3476.5401 15754.7579 6755.2663 11306.2639 4171.1233 4386.9301 6713.6093 3426.4027 8382.8507 196183775 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 12557.0409 5454.4563 2550.4515 4811.5300 3993.6734 5021.7290 6030.7363 2835.1828 125722.3046 8348.6734 4745.3381 2369.1624 2369.1624 5836.5260 11938.5540 13252.4889 475899.7348 7803.3063 7080.3427 4818.1890 3491.5030 6376.6406 3429.4123 20824.5815 9229.8324 11832.5802 8467.7751 9251.2388 4906.6173 4482.2718 11335.1168 21106432 hbh Organic Remediation Aromatics BTEX and related aromatics Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas citri; 224651.3635 15179.3897 122435.6544 118462.2961 178940.1128 23542.6158 93306.1436 248691.3955 120341.6083 112250.3793 106664.9812 169466.2535 2322933.5843 198008.0950 191537.1153 158514.8025 105506.3979 105506.3979 302000.2247 160716.2822 100560.2423 239234.2685 271926.6778 233249.1544 156066.1803 68887.9957 171374.6716 183083.7172 363332.0726 281256.2239 180712.3820 111196.2988 131700.7633 218412.2177 187573.9874 345604.7464 114334520 linb Organic Remediation Pesticides related compound NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 4271.8187 5740.6150 4398.5091 4177.7043 5163.3134 3613.9536 58974.6141 4483.5934 7102.7671 4803.4332 3846.8162 3846.8162 4242.7218 11634.9040 4257.9510 6401.3546 6232.0665 10378.8048 4600.1483 5329.3694 7537.5067 3015.7687 12786.6199 5202.0168 7776.2888 7908.4720 6068.6900 3249.4056 3106.6253 8775.7874 374922739 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12706.9461 6806.0453 5562.0571 18600.1327 4876.2922 7918.2332 3843.0156 4610.3849 7235.5046 200366.3243 18696.8683 9360.0860 9309.2315 9998.6048 9998.6048 6272.6280 11196.2183 8507.2040 77140.4273 10123.9161 6053.6887 7736.8795 4019.8306 15457.2067 9868.6241 10427.1028 8010.3218 9249.3023 4545.0414 14773.6699 351728893 xyla Carbon Cycling Carbon degradation Hemicellulose Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 25977.5503 10013.1352 6798.4398 15003.2130 4052.3516 12137.8939 34696.6903 8963.2624 15359.5398 32760.6261 127570.7588 55869.5515 6334.1996 14885.4954 7865.2180 7865.2180 23258.5042 29318.5578 17263.3888 12257.9857 63699.7132 6267.3718 9202.5130 21317.5391 13062.8174 14921.0879 49400.0266 14952.0477 9067.3872 8401.4750 13363.0736 13220.8470 11248.2139 9754.5329 219563160 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8567.1911 6848.6449 7860.9657 3841.8427 19179.2256 3629.6927 6803.3092 9008.5623 12231.6294 158113.9193 7999.5117 9685.6431 10154.0369 10154.0369 3541.2693 27729.2260 6793.9390 12777.2729 16533.4108 9919.8888 4457.6960 3950.6063 17700.4276 3802.5317 20752.3075 3782.9988 8322.2941 4728.6951 9934.0278 14564.7168 3095.9992 24870.4731 780816 xylanase Carbon Cycling Carbon degradation Hemicellulose Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 66579.7142 11318.4942 20066.0473 7927.4645 3701.9135 2708.4658 6738.5418 2293.8961 2293.8961 6049.6082 4772.3464 2116.1831 3647.3100 7060.4336 3007.9997 3863.9298 7842.1697 6001.1186 307949766 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5775.6594 4741.0484 2985.5324 2730.6115 2388.5042 5292.1876 60965.7954 5015.2518 4714.9174 2572.0640 6660.1492 5223.4865 4228.5641 3771.7605 2093.5361 2809.5641 2524.5617 8982.2365 5614.7362 3192.1662 4632.4239 2358.9957 5768.2239 222543447 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 11389.5973 31723.5079 6062.5046 4093.4328 8109.4373 5286.8626 5314.2651 8158.1002 8419.0800 130148.6767 11696.9773 5192.7729 16539.0648 4510.6833 4510.6833 19372.4094 6917.5527 7813.9960 48148.3732 5009.4227 5737.0848 3250.3911 6673.1326 3828.9083 15977.6754 8539.4903 12786.3705 4575.7650 5864.1874 14837.6832 4401.1105 11384.3112 379010258 gdh Nitrogen Ammonification NA Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 1080192.2893 166676.2935 9590.6804 17714.0438 6454.3561 18413.4620 14524.2406 26481.3354 18715.8641 23254.7312 20401.7858 398025.6702 65955.1760 23759.5396 67787.3412 22336.7531 22336.7531 14122.1323 41118.7353 18868.0356 29360.5301 23330.5941 19060.2840 14524.0605 22179.3722 25411.5774 20394.8977 63734.0072 29874.5455 39727.2600 17629.4337 38193.6056 40772.1633 16405.5846 33510.4522 119391475 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 57629.6316 8429.1142 13620.4756 3264.6935 6957.8740 3563.1269 18731.9834 6156.6861 104995.1243 5260.4877 3197.8828 18536.8636 2804.4576 2804.4576 4267.7405 10857.1879 3810.5826 7425.5561 79792.9913 4345.6709 4976.9639 10952.2460 18968.0370 5154.3192 11959.7417 8354.9065 9938.1741 152483.9988 12755.8142 30464.7840 345858810 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 4545.7558 200888.5983 3630.1961 10120.2323 63903.7174 6123.7245 7149.6384 9171.1878 18254.0263 9575.6096 5261.9766 9586.7462 3241.8789 27935.4954 5586.9173 9189.8113 8040.9099 3837.5911 5858.3597 3737.5386 91795804 ppx Phosphorus Polyphosphate degradation NA Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 4819.9150 3352.7601 3598.8161 4796.6458 6286.3130 6132.4095 78038.6236 4589.6023 5489.6282 4560.3705 4560.3705 7423.8839 13906.4603 10029.7912 8771.6080 8032.9509 7909.4942 3191.2841 9251.3974 3078.8539 22607.1160 24141.1342 8570.2701 4970.5997 5407.3568 9769.6372 4076.6344 7765.4043 39998513 mer Metal Homeostasis Mercury Detoxification Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 8301.9632 65375.9383 64820.2797 18507.5488 6669.3247 14226.2134 4634.7845 13678.8570 15291.4129 16800.4463 228759.4706 18186.0986 22193.5523 12518.8495 15355.4018 15355.4018 6123.1428 22188.8695 9756.8263 6933.1029 19564.2733 5701.2881 10728.5101 21189.2631 23440.8954 13083.9153 41187.9698 27413.3685 55099.9821 14429.0171 13270.7862 23630.5667 5304.9777 29024.3260 270288049 exoglucanase Carbon Cycling Carbon degradation Cellulose Stilbella annulata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Acrostalagmus; 6872.7050 11752.5262 53488.3655 5737.2531 14711.5746 4373.7748 8240.0333 13048.6281 22416.8156 428617.3911 54142.8278 19558.3712 25800.7799 7055.6371 7055.6371 10082.5226 11275.5539 11291.1557 3943.8631 4793.1032 5420.4380 5638.3934 21840.2619 67540.3759 6502.1232 23145.4650 24214.2067 33080.6021 20432.5901 17889.3574 48448.3786 5840.6580 4636.0987 165880077 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 13456.7105 7908.6621 27783.6065 19679.5248 6090.8263 14330.0434 3725.6567 6587.3472 10151.1369 5936.8870 185491.4265 9065.1075 10675.0772 5460.6412 6452.3794 6452.3794 8199.6191 15336.6694 11392.3339 11594.7604 12967.6723 23037.8194 9084.4681 7029.1369 13622.3008 7260.6910 25059.0510 9342.3417 15123.1713 4922.1302 9819.2431 12399.5837 4779.1345 16219.7279 45684 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. CF600 superkingdom:Bacteria;phylum:Proteobacteria; 4308.6171 2288.8078 120044.0457 2630.6368 2630.6368 3180.9140 8358.6092 5156.6715 2563.4828 7005.0298 12092.6473 5554.7383 7668.2332 2302.2139 3049.7386 5420039 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces tendae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5016.6423 5441.8027 25621.2252 15720.7965 2235.2744 14726.3646 5204.7958 5984.4047 2771.4065 71583.3027 6259.5674 4836.7964 6932.3881 4415.7734 4415.7734 9879.5648 5236.2577 4818.5727 2448.8196 3483.5790 8395.0565 3039.3966 10825.3981 9358.9645 8840.2281 2892.7037 4293.7732 3433.0624 261284230 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 10529.1855 15135.9657 8467.3929 10808.1096 7667.3767 4229.0495 5227.7617 8545.5526 10929.0430 10217.1262 218690.9001 12440.8671 11759.1907 12063.5621 10763.4126 10763.4126 6713.8085 14904.6313 13685.9332 13915.0655 256353.1942 11687.2387 6113.6204 7201.9487 12696.6246 8397.7751 22145.9177 9843.3060 13389.0390 5947.3766 22625.6419 9470.2843 5352.7479 17195.4302 114330729 amyA Carbon Cycling Carbon degradation Starch Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 13227.7555 16638.9279 5667.5654 8113.4962 6624.1231 3460.0456 5775.7603 3941.1771 100088.7386 9684.5593 8715.6510 6797.3785 10303.6531 10303.6531 3955.8103 12819.9332 15370.4932 4809.6036 8723.9232 8628.4417 4166.1324 7296.5094 12366.5982 3781.9610 10977.8655 6219.1095 17112.7230 3594.2672 4055.5402 93814.0076 3392.3777 5806.2370 29466088 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 151344.5823 20525.4683 5990.4988 6604.7888 3039.2297 5395.4448 10067.9826 6087.8795 7644.6195 5011.0395 161594.3690 5681.3980 10531.5176 8930.6085 5691.0936 5691.0936 174337.7253 15358.6410 6876.7556 267061.7005 16062.8078 15216.2816 8821.9516 4780.7980 7818.4346 8015.0807 20748.8099 8374.6092 11545.2020 9260.2026 18883.4946 45786.1386 3706.0849 6569.3791 13249533 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 177161.4431 59610.0428 27019.1725 365645.8644 30856.7603 18734.5579 39628.7985 21330.9717 27999.2900 29333.2011 25435.2072 900324.7538 527454.0844 40183.7868 40827.0351 23382.5043 23382.5043 31672.9340 40311.7745 102659.5496 23459.3706 21907.7740 78081.5748 59505.9936 46975.4351 110163.0291 22727.3430 350832.2901 132746.5355 79667.7531 28493.0719 39050.3576 42708.5518 12241.1987 54638.0578 126725433 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8154.2068 4784.4607 2732.9808 8039.7115 6418.0466 6418.0466 3275.8716 10182.1949 5025.6349 36198.0226 2101.9309 3146.7834 6309.7566 10007.0314 4912.2021 7379.4665 3797.9983 3185.4560 3276.1640 294884053 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto45_4W superkingdom:Bacteria; 36409.6850 21977.9721 52270.9604 13512.3491 8866.2511 62864.2286 22369.7615 33611.4166 50870.5569 41819.3124 56757.2129 45918.7699 542766.4874 26729.3772 42206.5568 32947.4475 38749.7937 38749.7937 42753.6987 131469.4632 133348.6145 87532.7853 77029.1795 738374.7656 46984.2888 22466.5569 18769.3404 29083.2008 85534.9792 47496.1571 33291.2706 35931.0539 61834.8300 53606.3230 57035.4339 34078.2388 229492981 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8043.3670 2033577.7918 46291.8624 14824.2771 3417.1234 15146.6673 16155.4143 7713.0128 100728.8672 3413.1770 3290.0045 3290.0045 11671.8241 69987.3676 4573.4319 4688.2863 3613.1462 21369.1955 8476.1049 26436.1195 8643.6814 10093.0214 7266.3500 2682.7742 7723.4981 2642.1266 229820013 ara Carbon Cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 30543.0873 23844.9612 18952.7158 19356.9997 48199.1662 13832.2429 24257.5573 27977.1809 16267.9645 32361.1963 45306.8190 630047.3248 24135.7278 63527.5033 48904.9584 38750.8780 38750.8780 13239.8002 48789.9853 28230.3643 96580.1743 88840.9410 47528.4709 21004.7866 22201.8326 42559.6598 26797.0483 60751.7593 55873.1551 48215.7544 15393.5352 29928.0756 30553.0113 68784.9299 15121.7471 373096263 atzb Organic Remediation Herbicides related compound NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 21759.1636 12543.6948 11515.7811 23429.0845 5792.2442 12249.4097 11855.0362 8808.2333 24709.0738 26683.2988 17825.6687 450237.0629 22392.6655 26610.2102 9729.1535 5475.4305 5475.4305 10370.4047 23623.0531 27028.7478 14534.9384 31467.2406 14477.1030 8140.3500 10882.6679 22950.9509 25520.5258 44954.1617 23345.9049 23016.7394 9986.5392 15883.8596 15072.6747 9946.4593 30667.6247 347527445 sdsa Organic Remediation Others NA Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 5591.4970 5851.9300 2614.2945 5008.2608 4097.0694 283309.8316 4954.4422 3844.9652 6490.6120 3961.2913 3961.2913 5223.6597 8300.8174 3985.2680 8272.9765 5264.5527 2490.0025 3222.0821 5756.2487 2293.1939 42010.8603 9198.6929 13141.2131 2015.9641 5569.2068 7099.1184 6503.9343 84788778 B_lactamase_A Virulence Antibiotic resistance Degradation Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 6316.9769 9955.6006 2835.1935 5625.1988 7575.1916 8420.9113 6624.4653 62342.2104 7216.9066 6025.8223 15770.9963 4984.2194 4984.2194 4303.5123 8166.9308 9079.0354 7123.8113 182928.9260 5699.9935 12532.5901 5044.4048 188256.4126 11916.5966 12956.2667 5752.7589 8265.1493 6000.9903 6500.2575 3127135 actin_Viridiplantae Other Phylogenetic NA Mesostigma viride superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;class:Mesostigmatophyceae;order:Mesostigmatales;family:Mesostigmataceae;genus:Mesostigma; 4766.6949 2825.2922 3498.6235 4921.9529 81748.5701 5914.8256 5209.6147 2890.0514 2890.0514 5528.9197 10260.3142 6934.2593 4451.7930 6982.3794 7343.0561 3289.6417 3654.7686 7195.0638 2495.2479 11389.9452 4732.8884 7043.2832 3047.3548 4070.0965 5550.5635 2247.6143 6898.1316 69952611 amyA Carbon Cycling Carbon degradation Starch Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 6296.5244 49758.2050 8579.6984 8562.2640 4044.7586 5316.6960 3632.6272 6902.5861 3094.9285 113779.5041 5201.5935 5274.7787 2729.1090 2729.1090 5411.0093 8262.1534 7890.3784 4245.7147 5025.1406 5679.3468 2478.5205 3996.4222 9289.1316 3470.4291 12977.9265 7987.4129 10410.9065 4016.0943 4073.5609 5580.3065 5090.1431 6962.3566 353194849 bphF1 Organic Remediation Aromatics Polycyclic aromatics Halobacterium sp. DL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 16030.9650 359593.0469 83833.4092 4019.1371 13680.0702 3974.6125 13373.6498 3633.3933 3268.4235 16018.4298 10324.3048 2102.7057 2102.7057 6730.1828 10595.0063 4079.3296 2427.2664 6094.6255 6797.1328 9949.9837 4669.9120 4864.9224 6091.0680 5018.6997 5879.3323 5926.4428 77378465 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24719.5599 8099.2902 12498.1289 3546.3589 3066.2807 2103.7365 5478.6993 5690.0022 8341.0091 93699.0218 10114.2751 12645.6112 5900.5066 5900.5066 2623.5494 11955.0931 7986.6935 7927.2911 3665.0697 3663.9978 19572.7107 131104.8122 23803.1180 8938.1326 8791.1467 3350.8785 5809.3543 32382.9063 6371.3059 15871.4511 422314483 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22395.3355 10194.0559 299359.6523 30807.7895 11084.8737 24153.9698 29819.1305 9529.3941 11971.8691 19400.6360 17528.9157 302552.1010 21322.3769 13168.9002 237071.8688 20749.1309 20749.1309 88507.7625 57876.2354 14825.5960 34907.7016 24978.5427 24422.7788 89281.1703 24899.0219 24606.4004 17630.0092 42765.4771 27658.0378 31724.0612 9764.3651 29993.0343 24403.5357 14124.8838 38776.0163 78093518 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 130088.3451 61890.8502 21037.8633 20963.0960 4702.6542 17725.5767 33804.1229 25260.6444 36881.3795 25163.2802 29949.5833 726852.5678 67153.9093 32434.5162 28111.8561 187725.4729 187725.4729 20478.1818 62720.4472 28896.8124 44589.6788 113626.7771 41634.2282 28871.4457 27690.3226 172596.6435 19594.5354 72597.3897 48381.9949 48404.3139 12907.6585 34879.3813 75324.7147 29068.6240 195072.4475 57642107 cda Carbon Cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 27771.8184 22748.9157 21108.3095 32247.2550 23312.5264 6937.7160 16986.8025 13765.5396 12407.7168 19494.9324 22809.0664 12082.1968 514708.3029 29091.1115 22491.2473 25570.0268 12935.7492 12935.7492 14021.0679 30447.2769 21853.7112 20922.9807 22584.8813 29862.3034 10932.7882 11615.5288 29179.6393 10973.7765 41924.7437 24551.3406 23893.4737 10539.2147 13062.5758 15490.7941 10606.6880 37640.0653 170605710 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6600.6758 11963.1776 6513.7076 2245.9127 4323.2334 6041.8133 2852.0215 56401.2452 6887.4736 6031.3951 5540.5363 3776.4853 3776.4853 4541.3790 11552.3988 6645.4200 6547.3773 8335.7297 8864.1752 4615.3250 3144.2898 7061.7205 2443.1586 10930.6583 4075.1747 10229.7118 2911.6970 3009.8023 3727.1521 4400.7765 9877.7759 359772592 cutinase Carbon Cycling Carbon degradation Cutin Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 40593.4239 73475.1985 12982.8761 10569.9401 15352.0809 12058.1176 14719.1521 14651.2134 26340.4531 25003.5726 42947.3032 420383.1951 53368.8756 24432.8344 31280.5675 42117.1898 42117.1898 12555.0188 136939.3309 15644.4954 19029.1548 29133.0954 21099.5749 14572.8795 32176.0811 92940.3555 42301.9402 68972.9264 34110.7777 35415.9902 24900.1559 28787.0814 34864.9061 23081.9555 49406.8095 330469679 xylj Organic Remediation Aromatics BTEX and related aromatics Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 17286.4267 18678.8126 11811.4994 58634.3432 8919.5458 2397.2950 7404.1665 15216.8094 8746.6282 9768.3692 10465.9766 182389.5928 11024.4233 15389.0458 13072.4078 11977.1450 11977.1450 30388.0937 26537.3540 5690.2181 14503.9374 16297.1016 11925.9899 6834.1053 8764.0951 12447.1475 15551.6992 40234.4566 8516.8676 15165.1156 5592.8548 11002.6818 11126.9923 128066.9361 6628.5551 255104551 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 5907.8866 13839.8327 8769.2108 14766.2194 297148703 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9288.9387 9520.1823 9844.0261 7953.5258 3435.8560 7399.1962 3588.6179 7400.5811 4999.4927 152062.9769 4102.5361 9841.0504 4800.9684 4249.9622 4249.9622 3385.9180 24798.9858 7254.9166 32010.9987 61029.3477 130135.7863 43047.0760 3525.9919 9427.3408 25924.6320 36040.4787 7900.1437 6425.2878 3866.4438 4032.6986 18295.3125 4962.2766 88488.5267 333489684 Sir Sulfur sulfite reduction NA Serratia sp. AS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8306.2021 4729.2138 16164.6243 5710.5097 6478.0822 5097.0446 5097.0446 7507.5355 4838.2731 5107.2801 12332.5230 7269.3574 19156.1363 4422.6300 5656.3320 17519.6791 5616.6253 6163.1191 261351990 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 44575.2716 384017.9096 55573.1132 11544.8293 22488.8887 7317.2612 12462.0788 10410.8853 47212.4802 24616.0142 327578.4129 7706.9570 123249.3261 93338.8751 17445.9058 17445.9058 13364.1263 28476.7181 10512.9718 43852.9047 16595.4498 9882.9738 11862.1943 13613.5630 37366.3014 35448.5447 53106.2357 23237.6623 20655.3643 4826.8370 16314.2409 17507.1457 10885.1546 23772.8603 390564734 linc Organic Remediation Pesticides related compound NA Nitrolancetus hollandicus Lb superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 18502.1542 10751.8947 4543.4676 3060.1941 5077.3879 6611.9665 14641.1107 5616.2065 7245.1422 5787.0329 5787.0329 2843.2474 9769.7614 5484.5967 6950.0682 9553.8545 5635.6600 2678.8366 4375.4588 11363.7593 6334.1569 22602.3698 5238.4660 36988.6007 6087.6338 7655.7894 5685.8827 3515.1362 49333367 exoglucanase Carbon Cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 7846.3486 10822.8000 6052.1455 5301.8494 6638.2805 5360.4271 13881.8503 6759.8860 35478.5794 17906.7059 15887396.3980 6303.7813 12934.8502 8978.2736 11483.9710 11483.9710 8133.2668 19913.1366 14810.1199 70775.1872 50382.0000 8418.7361 31241.1773 16426.9748 17353.9704 11217.0990 29654.2280 8405.1519 22668.8696 4121.1668 12296.0905 17576.6332 7146.6523 30417.2404 223939151 amyA Carbon Cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 11710.4577 17374.5549 10517.1315 2990.0437 5137.1396 15288.8595 3604.0707 512253.9569 6031.3596 64399.9064 6679.8196 7702.9424 6350.2045 4161.0081 4161.0081 13332.8786 15362.4903 14613.2809 7815.5561 16895.5437 22874.1842 4685.0788 5856.9102 12162.5488 6484.2491 33441.9586 9204.6184 16429.2349 3896.2001 7810.1333 14498.0979 8582.6555 8341.6351 227819493 poba Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 10961.0930 9112.4042 32481.9920 16847.5009 18375.2725 14016.0107 3772.6078 16788.1561 70416.9043 27241.8879 141246.9588 40620.6575 9158.6745 12285.2161 21642.8134 21642.8134 23774.7033 43852.0079 36890.6622 8653.4680 25311.9050 30159.5985 15420.0619 11355.3128 17664.1675 24917.9056 57955.0683 29652.7705 50141.2010 12607.6335 28663.9990 14875.7318 26671.7441 42467.4724 374922713 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5123.6016 3158.3758 2128.3815 4700.7562 25250.0084 3268.6645 6260.8960 4980.9672 5593.3472 2175.8579 10078.5231 5650.3391 1990.7189 3811.6427 3137.3670 4166.0377 298410754 p450aro Organic Remediation Aromatics polycyclic aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5074.9029 13681.7618 49901.8334 2013.1057 5505.9885 2055.6282 6100.2791 90137.7656 7345.7322 4491.7312 4142.4386 3624.0476 3624.0476 3669.4322 10035.4196 6775.6509 6415.5935 15335.0639 7685.1558 4841.5346 3803.8980 7453.4545 3944.4613 15339.6421 8497.2157 9137.8587 3988.7850 6532.5864 6147.7317 4942.9225 332592251 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5220.6426 8058.2800 293789.0214 23341.2949 11509.0474 4799.5921 4390.8317 47157.3575 46356.2377 14028.5038 137466.9531 5850.6418 20648.5163 36174.8076 13252.7586 13252.7586 14138.1691 14349.6457 8041.5246 7872.5446 3829.3342 15559.4025 3069.4464 11993.1315 9393.8529 9878.8048 5593.8258 20764.1230 5617.6428 3143.3598 9953.0600 260614067 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 10510.0807 6028.6530 6309.5880 6399.4061 7262.2655 4453.3086 6974.0009 8941.5667 3272.3478 97391.1249 6607.3760 6024.9292 6734.1111 2956.3086 2956.3086 4577.5502 16987.1631 8208.1845 8540.0427 11692.6371 10190.3504 4783.8070 4004.3106 10939.9328 5419.2736 17279.8770 9610.3851 8624.8461 4432.9455 5458.3332 8322.6151 3473.5708 36241.1851 288573889 mer Metal Homeostasis Mercury Detoxification Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 5275.5540 9875.1983 4693.5337 3536.2294 99030601 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 8302.5354 5077.6760 2751.7974 6010.5082 6340.1962 4363.6884 4129.8739 95439.9174 9603.4677 4849.6909 5902.4818 3278.2672 3278.2672 6180.7353 11086.8881 8491.8931 6967.9044 7702.8600 7378.7196 3308.3277 5301.8499 11409.8871 4575.7655 16100.9970 10817.5479 17899.9383 4431.6210 9751.9001 5744.3651 3608.6818 10582.1490 68510358 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15639.0663 9579.6215 6553.6731 5803.9633 4241.7337 3359.8982 2791.7680 9753.7189 14142.3044 14469.2964 126662.0166 11676.0253 18504.0899 27649.8654 30554.5319 30554.5319 3344.1667 12540.1494 11774.6159 37329.4409 90939.8919 7708.9531 10638.9964 8822.8497 14561.5743 23339.6682 21199.2780 22893.7618 23110.5923 9369.0110 4971.5606 30522.7257 8773.9498 5259.3506 164455578 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5408.9776 22311.7919 5609.2732 14943.1326 4513.6108 3317.3030 5076.2510 2814.8344 69418.5157 4160.9315 5503.3031 5049.4446 3287.3015 3287.3015 10837.0247 8604.5357 5787.4050 6320.1001 3114.1910 2526.4749 7288.5595 2576.7700 15513.3788 7607.1236 7606.6577 3122.4755 5386.1073 3132.4743 407068325 arylest Organic Remediation Aromatics Other aromatics Vibrio cyclitrophicus ZF14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cyclitrophicus; 4207.5022 5962.6272 42323.5206 6514.2653 3304.5782 3958.8776 6762.4456 7345.0811 2123.8265 2123.8265 6611.5167 5766.8840 5832.3971 4742.8812 3253.4861 2926.9731 8325.8145 7034.9661 3568.8341 3663.2339 2981.1672 23393001 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38991.7411 8366.9519 5967.5589 5563.6958 9970.0832 2678.1703 2537.2623 4669.3166 345870310 sqr Sulfur Sulfide Oxidation NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 24127.8699 10583.5224 17025.7493 52017.2701 4667.8971 7558.0148 120687.5777 39977.3670 16682.3619 18154.0028 14427.3627 239916.7941 30615.9976 28594.6331 49129.1551 11385.4439 11385.4439 12652.0259 27298.3459 14644.6682 12668.0575 15127.5345 35826.5585 24664.2231 50594.9014 28625.1622 61704.4707 633460.9764 14722.3611 34966.3484 61410.8645 21995.2522 26306.6053 17149.6590 25535.2923 383331886 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 3791.7723 22181.7021 3139.2073 12833.1318 7406.4723 84015.3031 7359.1768 8268.2110 8268.2110 5915.0063 28136.4517 4207.6183 6063.9822 7526.4367 5151.6388 3586.5205 5879.6858 49914.9568 186773.3445 4143.0080 10696.3337 2982.0018 4513.4183 4233.6978 3638.4239 315410271 ara Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 56505.7026 5171.8999 8076.9424 6495.4925 5652.9186 5921.2589 5984.5794 6255.4041 111971.9090 5494.1640 7901.3677 16871.6971 7102.8888 7102.8888 4890.0287 17360.9768 7450.9787 14738.5444 14493.6762 6467.9126 5736.7012 5882.5934 6762.6675 6684.1339 15055.4766 11538.5453 13209.3839 3156.3944 9088.1490 9116.9289 3632.4744 17456.2879 126202187 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5291.2579 6642.5094 2429.1827 2741.6351 2817.4359 5092.8001 5098.0028 3162.1767 112924.2624 13002.7663 5914.1726 3657.9575 2563.2277 2563.2277 3402.9270 9197.0126 7645.2772 8768.2177 6637.9676 8088.5755 3292.7153 3967.0944 8306.9910 4393.8023 14559.8582 4020.4523 7069.8318 8170.5226 4442.3222 9341.0064 18684.6660 11781.5892 300311094 TIM Carbon Cycling Carbon fixation Calvin cycle Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 188348.6396 38785.7335 125163.3104 755951.4993 102499.3959 84505.0376 68059.5585 534508.4591 77838.7081 152470.9474 250136.0275 156334.2037 4259066.0177 798514.2929 408580.8822 402750.1687 188566.2358 188566.2358 138638.5012 255199.9286 191522.4320 155095.5679 193322.1132 174204.2739 183187.8047 126877.4411 128789.5593 112788.0139 294026.4789 277558.3899 298011.4367 69552.6328 116299.5696 132857.7673 338318.7257 260151.9261 116067563 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10295.1763 10800.4627 5777.6348 19374.6655 6591.8854 4525.7828 56918.6616 11080.0631 8041.4010 5507.8939 125410.6477 7366.7319 13011.7669 7931.5512 6081.1545 6081.1545 4897.1735 19066.5332 11907.3810 63521.5059 18532.4810 10573.9350 55982.5263 12120.2388 11430.9836 4378.4495 21379.1406 13651.8490 15376.9736 7616.0181 9852.8581 17430.3819 5353.5080 12561.6981 538221 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. KC201 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6775.4952 5898.7974 12621.0777 13370.2984 8396.4204 6533.7394 3927.1354 7734.2094 9748.7925 3366.9787 139409.8408 12642.3226 6972.3301 4626.2553 4011.3254 4011.3254 7259.0908 13961.0047 10500.3177 9387.0775 10540.9032 9767.6255 4308.5945 4725.0364 12617.5273 5620.2990 13997.7320 7622.1847 13164.5435 5953.3548 5937.8734 7056.8293 4616.1252 20575.8230 145222248 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 46310.4324 18783.4720 16265.3477 6567.1443 13016.6980 10902.2358 40232.8830 13814.4995 18738.3120 18804.7247 39996.4280 356522.7491 19060.8496 35084.3114 42128.9283 31042.1859 31042.1859 40653.0319 29355.4527 13337.7958 19573.1138 64844.7586 119807.7819 10621.4555 21259.3236 36386.3261 23009.8527 69472.4161 27843.5740 35804.3091 16989.5601 34820.8272 26872.7047 10644.2232 49672.6407 256723237 nirk Nitrogen Denitrification NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4329.4117 20668.4980 11893.0162 2019.9763 3117.0680 3379.2173 8928.9844 64418.8185 3435.4585 5174.6057 5174.6057 3896.1425 6416.7209 4120.1943 4134.2610 6047.2660 3668.2847 64843.1478 2361.9291 5879.0240 2004.8421 7614.9800 3829.1301 9121.1871 2236.9613 2678.4900 7845.8488 116633906 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10936.0606 14776.6126 2858.2680 99812.4271 3353.6429 6407.4905 5183.4364 5492.1045 108127.7883 8087.7736 4721.9607 6118.5960 6118.5960 12580.5708 13857.0046 13765.9091 9025.7901 10195.3668 8545.1954 5552.3413 2951.1656 21018.8685 5944.0379 34760.1190 11112.5757 9750.8344 2719.0089 11382.3809 35187.1352 5086.3313 23021.0246 67921023 nitro Organic Remediation Others NA Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 5006.2757 4153.3714 270290267 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 17016.3950 8209.9664 43330.6494 7118.7623 3437.4123 21464.9494 3837.3074 6319.6294 6187.0314 4497.7619 120459.7496 9796.4607 15040.5736 7838.6024 6678.5144 6678.5144 3476.3155 9123.3956 8734.7538 9106.8206 7741.4865 8087.9130 3115.4804 6591.4969 9725.4256 3900.3736 16651.7161 3965.8944 18877.1095 3374.5246 3943.0240 5421.4454 3607.8160 9185.6653 308811638 actin_Viridiplantae Other Phylogenetic NA Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 5773.3987 4309.9328 7762.5101 3616.6431 3412.4971 4786.4681 5278.3496 102688.5590 5598.2558 6940.0942 2255.7660 2255.7660 4023.2611 8181.1933 6474.3563 6152.7468 8535.9464 5601.2755 3574.1078 6827.8424 3086.4275 9606.9695 6209.2066 6501.9286 4017.4554 4676.1040 3755.9684 3602.9547 18540.3738 217504916 badh Organic Remediation Aromatics Other aromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 7825.9397 8161.8246 5031.9804 30208.0588 7441.5055 6672.6235 8772.3285 3497.4730 135032.6370 13104.1519 5917.6416 13421.7592 12724.5658 12724.5658 5274.0193 11195.8216 9608.5757 11229.2602 10577.5329 11372.4526 6625.6452 4957.2732 11037.8233 6088.5771 20587.4179 7902.3539 11094.5867 11139.8996 11886.8856 12501.9740 5934.4203 10677.8471 149921338 vana Carbon Cycling Carbon degradation Vanillin/Lignin Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 14462.6007 17121.7304 4523.6798 19035.4213 7558.4602 7396.2173 9306.4810 2640.7709 4448.7328 15776.8918 5606.7114 178745.8869 8865.4667 8319.4483 13943.9746 6552.2155 6552.2155 5801.6549 21807.5148 11594.7307 7688.2765 12795.4660 9650.6630 5635.5179 4621.1079 12478.1679 6162.2648 17396.8418 5683.1082 12581.2289 7192.4566 10942.0029 12742.5445 5920.1885 21414.5090 340534876 ppx Phosphorus Polyphosphate degradation NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 4401.0270 5142.2467 5142.2467 6550.7637 3772.0241 2697.1317 6014.3322 2140.7811 317047027 trze Organic Remediation Herbicides related compound NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 13373.8514 73237.5031 8571.1023 6872.2349 8580.4328 6072.8714 8262.2243 5874.8764 7082.5689 110655.2282 5516.2472 10897.1528 54803.6574 5266.7488 5266.7488 6033.2546 11921.3610 5363.1549 12840.0327 12156.6369 11354.6609 3842.8266 4475.2132 13538.6677 49594.5521 37004.9685 9555.6546 17775.5459 6323.5742 8316.8318 19147.2997 15113.4665 31475.8465 350552305 b_lactamase Virulence Antibiotic resistance Degradation Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 5988.2158 3330.9851 9136.1683 9865.9156 2953.8185 3704.3602 3618.6203 3618.6203 3304.0947 8178.5909 6421.3981 5539.6678 4243.2002 6660.6851 4126.3784 3966.1204 5774.7489 7327.8788 2864.1916 3869.6533 6303.5939 3166.0948 397688427 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas stutzeri DSM 10701 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 26514.9018 17375.4238 8105.0003 15132.5376 13432.2175 5841.6994 15003.9479 9665.8662 15665.2966 17284.4105 18298.5359 276766.8364 9603.1342 22955.1568 28499.2649 13982.0849 13982.0849 5731.3806 17192.0112 19067.0804 68979.8258 64741.5894 32255.6775 11529.1713 13468.2613 42036.0290 38426.6998 46073.3448 13060.4936 24428.0290 12298.9339 9434.8958 20688.9445 10595.6624 16284.6723 146307461 terc Metal Homeostasis Tellurium Detoxification Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 4657.8039 28998.3152 4075.9746 2651.8975 5933.6362 5183.5813 9365.8737 296963.8257 5027.7054 45442.7898 45442.7898 4008.8372 20362.4170 10136.5350 5203.1057 42750.9647 3107.8505 4324.2416 9704.7576 2825.8147 16786.5272 14672.7246 13939.2415 5201.7319 11754.1179 4808.9745 6628.8811 8035.4066 326197654 alkb Organic Remediation Other Hydrocarbons NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 8770.8788 3329.6132 2234.0212 4249.5976 2350.0765 64187.2211 4445.0248 61577.4069 61577.4069 7208.6943 3354.5385 5345.0377 10102.5885 3404.8700 16325.3042 2453.3828 6643.7306 3182.6307 3299.2133 7898.1733 302885691 RgaE Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 5923.0129 15384.2686 28455.9555 3335.4401 239330.3490 3748.1343 8913.9695 8913.9695 5537.5168 14219.7692 11891.7324 5077.2132 4500.0969 3262.7293 9859.0867 5382.0214 8630.7991 3083.9061 3828.9609 3466.3955 2609.8299 15606224 ppx Phosphorus Polyphosphate degradation NA Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 11853.2581 10654.7665 10775.1929 16921.0418 6559.6489 9332.1871 8943.6771 7769.3158 10731.7153 13449.8364 5889.4950 264109.8599 16175.5786 12486.4327 7751.4571 5272.8467 5272.8467 8700.1275 15759.8772 15599.2428 12037.0695 21126.1645 18571.2326 8750.2867 8172.4199 18299.3140 7308.4116 30174.0829 11517.0404 18003.1417 6854.3265 9604.9021 11001.2586 8100.4818 19663.5676 258576111 amyA Carbon Cycling Carbon degradation Starch Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 9261.9620 21359.0903 9661.6300 3625.7692 4754.7618 4888.2526 4816.9733 3651.7372 4782.6905 7248.3695 14442.4547 3656.0618 3656.0618 4114.6482 8603.0527 3919.7386 6575.5150 7894.8697 5916.8433 3047.8638 10409.7213 3111.6272 11856.1610 6147.2805 7012.2189 2806.2476 5361.4835 4062.2876 3935.2119 14297.6131 374413700 dsrB Sulfur sulfite reduction NA uncultured prokaryote 8510.8062 32205.7509 4579.4435 3268.0154 3178.0987 1987.1491 5124.4948 5579.2113 3102.7164 117416.2455 3543.5700 7465.2377 9178.6332 7106.8943 7106.8943 3458.9009 10078.7186 5307.5105 8337.0841 7266.7374 5490.3921 3139.1676 8401.3213 2234.8610 14837.7978 8085.3856 2719.2394 4013.0616 4939.1258 2736.4424 8353.6257 56460681 dehh109 Organic Remediation Chlorinated solvents NA Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 21148.0795 11025.5116 3475.9100 2265.7662 3770.2904 6031.9383 18287.7097 136454.8602 3928.3213 6430.3834 4552.6525 4552.6525 3127.0744 9146.7977 16464.5389 16617.2376 16263.9344 5042.3510 13281.4153 5300.0665 2861.6425 23524.8458 11757.2457 10549.3557 4270.7084 3599.8343 6368.6212 7306.1437 5050.8545 260220483 amyA Carbon Cycling Carbon degradation Starch Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 11211.6985 24112.0562 2763.4455 3273.2517 15138.4971 5067.2665 66209.9942 25164.0778 5333.0500 3954.1571 5916.9518 5916.9518 5342.4083 14748.4816 5544.8960 8294.3921 29641.1820 4980.1039 4655.8954 4553.4067 5700.1436 14485.5940 14720.3150 7962.8765 8996.8470 2890.6706 3403.4734 8747.2925 4028.5148 4889.1757 90204437 urec Nitrogen Ammonification NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 15752.8458 8295.6318 15127.2715 37093.9927 16710.3431 26001.6386 60119.2304 33538.9560 18534.5100 42566.9945 28612.7816 366035.5993 43909.7652 21524.7245 35632.5277 24821.5908 24821.5908 11253.5772 25760.0976 21860.8751 13522.6823 153362.5422 10730.4741 20748.2597 14304.5306 35198.9395 14854.0013 35754.2006 28049.2123 27072.6214 11795.1377 14190.2425 9825.3207 8479.1827 20727.3554 119956902 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 111948.4969 47237.6300 23489.7337 1751920.7787 78996.7179 19362.6168 294859.3680 142705.2959 63436.1978 99524.6912 337542.9307 163534.7140 1279045.4626 83092.0276 54444.6225 119611.9903 60626.6065 60626.6065 44883.1169 153289.3908 66394.3525 136813.1738 62945.1834 66303.0595 79480.7552 45839.2763 97989.5944 106700.2860 131732.9165 46967.9043 65726.0089 45550.5868 54165.9465 63081.7217 51661.5776 55190.5717 316254870 amyA Carbon Cycling Carbon degradation Starch Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 84701.4706 36519.8206 5838.3098 14923.7960 4017.0021 103977.1190 22196.0122 12107.7578 12967.0831 13005.7891 481970.4626 247772.6269 12568.3210 32208.5134 24212.9229 24212.9229 11509.5309 21675.6933 6066.5040 13613.7649 17368.0409 63438.5728 8624.6320 12594.4637 18589.5374 21664.9458 51453.2624 10047.7790 14891.4750 13665.6251 26978.3099 44105.7697 29032.2171 48583.4482 315644883 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 10197.5548 529183.4260 12966.1941 3987.1326 11561.6015 8913.2017 6854.4971 7613.3910 10414.6551 1388515.6983 8476.4484 6110.3196 4952.9814 4545.2899 4545.2899 4333.0823 15122.1202 6750.8222 16923.0999 15426.5976 13399.1768 4881.4083 5570.7533 9779.1997 2864.3741 9213.2952 6664.9555 12290.6112 4429.9769 7122.2193 7029.7786 6471.6669 9327.7830 166368206 amyA Carbon Cycling Carbon degradation Starch Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 5551.3102 2380.9257 2380.9257 6051.4376 188595290 nrfa Nitrogen Dissimilatory N reduction NA Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 8829.1668 10740.3791 18587.2790 945726.9668 52358.8747 13764.6351 14541.0514 15782.5906 12732.9907 14782.0166 25793.2566 33928.5045 408123.4542 16493.0933 28662.4714 56336.0220 48955.8009 48955.8009 25197.6355 41603.1443 21450.0692 22584.0208 18916.2635 20319.1579 12244.7618 39600.0899 36187.9658 19855.3290 35892.7849 25092.5403 31638.0778 12432.9127 20079.7223 49567.4774 8505.0631 23358.3916 225194092 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5322.3144 4582.7666 3325.6413 5248.7618 2038.6087 3367.9191 3156.0491 3602.6648 3694.4199 3694.4199 5479.7622 4031.9981 3965.4896 5074.5409 2417.0635 2199.0302 9041.9977 3223.4123 5060.0500 4996.0003 2944.2900 4937.6746 157911982 ppx Phosphorus Polyphosphate degradation NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 27375.0270 12946.9585 11094.2539 66587.3183 9354.6348 6015.0104 6765.5582 4831.1271 9859.6452 6631.7523 10069.7659 197112.5231 18858.6020 16875.6388 21105.5502 9323.5867 9323.5867 16786.5828 21551.5686 10459.0613 10901.1760 7719.3600 4837.1322 5903.5328 9677.4190 27073.2235 8233.9791 36281.9439 32252.6812 19775.5753 7155.4419 7686.3874 11659.4351 6679.8139 7471.4912 209874119 aln Organic Remediation Others NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 32253.3437 14473.4864 15910.3320 11820.1364 13829.0731 21625.0031 17400.6514 11045.4131 18076.5858 37957.5452 28814.8526 458531.5993 34144.1679 19471.3771 26350.2980 25729.2051 25729.2051 16502.0362 30808.1154 24146.5877 20911.7108 36476.4406 39288.6177 15240.5301 15058.5704 28824.4538 16028.9352 40556.1901 22617.3958 27769.5309 15047.7065 17754.0741 17327.7410 14809.1360 28618.7340 2944191 axe Carbon Cycling Carbon degradation Cellulose Penicillium purpurogenum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 6491.4623 9673.8417 2528.1851 29077.8850 6362.4378 2367.3039 2367.3039 3659.3690 67154952 amyA Carbon Cycling Carbon degradation Starch Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 3671.0963 9547.1823 10370.2557 3137.6041 4071.6596 5586.1845 5653.1996 5778.4087 10687.6469 4370.1497 4874.2891 4874.2891 5079.2548 4632.6226 5202.0243 6816.1920 2232.9030 11192.3025 4731.6824 7754.8844 2603.2331 2766.8276 3295.5949 261835494 ppx Phosphorus Polyphosphate degradation NA Halothiobacillus neapolitanus c2 13874.2721 35995.0983 17372.5397 14230.5329 32402.0462 8524.9359 19190.6104 15459.6145 6510.4321 356675.8230 18445.7846 13556.6814 19341.5151 11666.3711 11666.3711 8770.3123 26595.7501 16338.5252 25745.6862 19836.9440 11224.8643 6028.1952 8167.6136 20010.3095 6985.3777 40893.6457 21445.5934 23021.0565 8720.4778 12081.0598 11197.6379 10363.4196 24558.5477 109452408 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 244473.0654 18951.4642 30421.7603 13060.1422 13358.5625 84952.6619 27244.6102 7381.7343 44103.3106 21389.8073 20579.6918 509675.6034 27632.9111 54728.9413 45792.2111 18316.1629 18316.1629 22793.1593 35097.4750 26776.9802 20622.7937 49309.2243 30965.4077 13846.6725 14316.6172 40975.5253 17863.9753 61121.5660 23051.8438 29243.8436 14697.2103 21278.0824 19351.1382 12260.8695 26898.5034 38427034 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14534.9445 8591.7234 7287.1247 5178.3292 16734.3390 11593.5012 4197.4294 17596.3330 9164.6339 389831.2910 11193.7057 6544.2496 54401.1723 22459.7813 22459.7813 5149.9106 16757.3697 14939.9943 6979.8599 11002.7766 15582.3339 23225.1543 10953.0365 18506.4036 13515.6218 16497.9399 10792.6495 10290.7731 6517.4432 11674.7765 11427.0499 13770.3179 121307593 terc Metal Homeostasis Tellurium Detoxification Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 70894.7043 4568.5528 18742.5046 3825.4880 18260.6042 23848.7952 12686.4509 10485.5695 121913.3402 17638.6042 6644.6478 7526.6112 6187.4241 6187.4241 3006.0791 61800.0238 8379.7801 5774.6894 15472.1302 4525.5544 2938.4093 7567.3357 8925.4305 5992.0679 17402.2725 190511.8122 6557.8966 3704.4552 7064.9074 22120.0101 5466.2685 8411.3313 345043917 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 10077.0449 5170.9985 6090.0134 7814.2839 5999.3262 13742.4483 4118.2401 4107.1153 5874.0881 9647.6323 3068.2604 127330.5666 7260.3675 7098.6724 5509.9529 3475.4814 3475.4814 6806.5596 14005.4462 10872.5732 11444.9423 11023.1299 11185.7092 4362.2971 4892.8506 9703.3906 4750.2331 17262.9464 7792.7364 16959.9647 4574.3816 4932.1600 7796.1743 5045.3433 22512.6473 407276656 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 15517.3495 9470.7380 27905.2469 10321.6865 24577.5217 34856.3683 14363.5634 17263.5610 10619.6608 11263.8229 6544.7787 360041.4999 25200.6280 16469.4222 11290.9489 6808.0855 6808.0855 10445.8524 13142.8676 13236.8055 44923.6862 152983.7487 18159.0758 16256.7585 13263.7521 22737.3370 8530.7182 24753.9672 18467.1878 19633.2830 7897.7292 7757.5720 14291.6101 8933.6732 16974.0688 254454763 FBPase Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 10904.9939 5676.5316 19544.1836 30791.2130 10722.2622 49838.6729 13624.9503 5696.8448 11014.6323 36105.2780 15517.1605 222227.7365 14564.4531 13817.5510 29686.4158 12175.3788 12175.3788 6802.7595 35105.4535 15923.9639 18178.2769 16945.6257 17617.1898 10451.3167 9819.9160 33066.2120 12774.1860 35826.2112 37717.9856 36296.8333 17654.0066 22985.6248 10270.2634 15345.4652 7116.6169 373890412 amyA Carbon Cycling Carbon degradation Starch Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 7328.5790 5693.6948 2348.8627 2721.6066 3090.1764 4567.2530 3697.6324 54678.8355 3973.0774 4085.7114 6381.2967 6381.2967 4106.2070 7697.5406 4526.5887 5359.6856 8388.5711 5357.0394 2953.2716 7083.0666 2169.7801 16500.1552 17134.5705 6253.0856 2949.1861 6703.2104 4674.6969 3138.8154 10462.6775 323384760 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11848.4268 3457.7694 10663.4508 3918.3888 5314.1541 7570.7659 4227.7575 95788.6838 7590.2304 7092.8863 5190.3819 5190.3819 6024.2856 10952.1638 7923.6245 4976.9991 19061.8228 16963.7247 37570.4951 4467.5161 24653.3606 4271.9040 17703.6075 10706.6458 8316.0847 6494.4952 4351.1951 5617.1805 4881.8207 8333.3078 161897705 protease_serine_fungi Carbon Cycling Carbon degradation protein Ophiocordyceps sinensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Ophiocordycipitaceae;genus:Ophiocordyceps; 5895.9421 22991.4593 2930.5670 3727.5640 75284.9979 4541.8678 50334.5684 4159.2527 2866.6010 103488178 mer Metal Homeostasis Mercury Detoxification Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 33413.2326 12022.4717 39499.4478 100265.9193 28652.1859 8878.6508 32927.5524 23917.2014 20774.3778 39857.2320 47759.0863 20784.1030 915523.8903 60045.6479 88924.4949 36888.9265 21649.6058 21649.6058 26863.3005 70863.8568 36185.7689 49601.9206 59318.0271 55992.5902 19929.2263 29794.9487 35764.7915 18064.8789 78670.8904 31297.7692 42776.7252 16728.4250 35221.4973 31130.7655 28184.0183 84284.0247 326541528 chitinase Carbon Cycling Carbon degradation Chitin Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 7804.4264 4689.7559 4693.5121 4672.6355 5747.8881 2780.2625 161802.2931 4195.4472 9755.9635 4715.5567 4275.6970 7671.5229 2707.6360 5549.9847 11076.9447 4908.1197 5481.3604 5352.9185 3208.7800 225159110 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 64310.3064 7246.3107 14951.0166 40469.8049 7652.6336 20846.9428 19563.3579 21700.7675 134477.6527 5965.6170 22400.0211 12747.7616 27512.1815 27512.1815 80237.1376 15223.6232 20493.0450 5678.5562 82199.2518 10997.6706 3977.0264 42448.4195 10376.8882 26213.4004 22735.5518 17041.5988 15007.7774 5468.8646 45391.7146 51755.4712 10459.9582 13166.9751 150036102 SoxB Sulfur Sulfur Oxidation NA Ectothiorhodospira mobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 56019.0641 2200455.8796 17081.6728 10997.9511 18602.8618 5316.8902 17425.4883 18905.0931 10908.8650 40199.5169 13684.8240 29152.6430 26645.2369 22873.7998 20901.1381 40360.2522 14193.7785 22120.5868 54056.5941 36283.3256 21045.5819 118966.9039 357047112 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 10514.0242 2667.5100 2565.0215 5619.9873 17719.0412 2866.6930 8355037.4341 4305.2452 6451.1341 95498.0053 95498.0053 4000.5082 8032.6868 5336.9347 7786.8994 50310.2969 2506.0553 6493.5781 3473.5991 10971.8157 4334.5837 5946.8577 3909.5437 3745.5575 3357.7978 2945.0060 8896.2526 359819737 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 52786.3633 3106.9640 2474.6987 7605.6011 10404.1477 7891.8960 55517.8491 18123.7747 7015.0635 7015.0635 4507.9084 27996.9958 12697.0578 51256.6055 15532.4388 6992.7416 3232.4438 10418.9511 10769.8206 2349.2370 49651.7923 20208.5016 12007.3603 5274.0591 14781.4007 14451.1073 2387.3405 4908.6388 147830786 xylanase Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 54990.0706 23456.1387 20406.0088 25745.9085 13190.2516 8184.0211 21683.7563 5888.6359 16751.2421 19007.1429 26720.7942 501417.5053 19675.8297 21930.1157 23691.5372 15390.8824 15390.8824 86987.6993 39409.5184 16334.6242 466868.8866 37859.0896 18094.5459 43664.8624 14492.7270 25904.4082 70334.0951 67802.3512 16931.5397 72620.8519 17735.8787 17625.0411 26214.3073 17755.6344 19726.5883 83595955 phn Organic Remediation Herbicides related compound NA uncultured marine bacterium Ant24C4 superkingdom:Bacteria; 7304.0072 50788.8253 14192.7321 11995.0363 6608.1765 11182.7928 4433.3574 10497.5590 8258.9347 7429.0638 109280.0067 23516.2134 7304.8059 20514.0909 8050.5182 8050.5182 3701.6251 26784.6644 7926.5051 6913.7145 13497.6305 9284.2777 6596.7334 16490.8646 15482.5694 28628.4449 47609.6214 12912.4754 14137.0890 4595.8567 60125.5605 5901.1341 6115.1006 80000.7971 406976418 alkk Organic Remediation Others NA uncultured bacterium superkingdom:Bacteria; 20873.5427 11142.8413 14933.4814 24200.5405 87773.3782 29945.7330 20656.0112 11145.6906 26857.2095 14553.1722 106849.5649 404958.0740 22648.9025 33032.1905 30037.4700 25343.3467 25343.3467 14385.2048 23692.8885 16280.8872 24933.3116 12275.1728 53044.1981 10347.7300 10710.2938 18268.1972 21289.1337 35686.3126 33900.6423 27225.7593 35025.3170 38294.8786 24511.6638 6785.8248 15368.1296 214044081 alkk Organic Remediation Others NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 144728.7385 30502.7677 65104.9706 76946.4848 1059075.4338 51450.2871 67287.6550 125183.6043 34467.2857 101703.8108 87275.2515 89377.5055 2516284.8642 225334.4272 163318.6553 277836.9227 126689.3410 126689.3410 148525.9603 162876.3990 83238.3673 296408.2511 228502.1790 236950.4819 61637.3491 97295.2311 118478.6953 63790.5762 212446.3372 312608.3833 155338.9879 232089.4123 189240.1772 108061.0194 442111.3932 107837.6159 386690232 alkb Organic Remediation Other Hydrocarbons NA Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 30754.0929 6534.8623 20329.6098 35367.3026 23226.0980 13098.7947 101120.2805 8245.3946 14311.0244 11702.9834 29062.5910 238442.4137 190339.5405 21706.3395 23975.3635 16439.3053 16439.3053 11304.3057 21792.2931 13435.4890 9898.3466 19224.4644 68557.4166 15524.0023 12538.2496 22943.9116 13085.6800 35877.7340 52531.6319 22793.5852 13739.3087 15233.4327 24301.9764 33558.8868 21006.4197 139003387 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 20818.6727 14807.2956 22173.1648 13124.3182 8606.8361 10339.0420 14628.4465 8154.5078 14505.2305 15416.9610 6355.8225 395659.2491 17736.0524 14770.2649 11673.1072 8254.2042 8254.2042 10005.2891 21572.8696 16924.9215 18218.3143 23141.8767 24918.8839 8404.7467 9740.9882 19879.6725 8268.9556 33552.4339 14214.4874 20636.1256 8612.0351 10850.5903 9855.9020 9490.2459 29886.2153 291345563 bphc Organic Remediation Aromatics Polycyclic aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 33221.5774 286401.8650 26467.0326 17069.5820 7327.0364 11283.7770 39975.1002 12819.2908 13856.4045 43271.4830 22161.2050 279927.1221 53154.0699 123434.6729 68583.5997 16667.0889 16667.0889 13704.1676 48793.0184 17122.0513 35816.7839 187715.2269 26605.1809 38691.8530 33531.8649 32640.4099 73553.3418 67933.9871 35739.1321 40548.5486 13956.9390 42789.5996 37005.0475 17513.8388 35116.9124 164508588 nosz Nitrogen Denitrification NA uncultured organism 32664.7932 13339.4735 10846.9983 26971.6280 37294.4573 10827.9697 18094.2180 16850.6747 8194.6937 13907.1692 23422.7263 9519.8045 483466.9990 27215.3194 32828.3712 37414.4832 22900.9874 22900.9874 14798.7828 26247.8273 24739.1733 24250.6878 24524.5413 28582.3713 8552.6628 11189.6562 30456.7725 11644.5803 40474.9534 31786.9194 30525.6247 14870.7703 15918.9441 13879.7784 10688.6693 27880.4165 385678937 linb Organic Remediation Pesticides related compound NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 5458.4178 3887.9888 20303.6481 8008.6274 3902.2018 3752.9188 3420.7060 4111.4978 66434.8667 3871.7984 8895.5304 5488.5679 5488.5679 9183.4931 4154.8220 4863.0744 5015.2362 6344.5979 2291.4046 4572.6315 5167.4162 3379.0462 2804.9513 5106.5746 3385.0547 404271674 ben_bcla virulence NA NA Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 29553.9274 113811.7633 2074.3390 2847.0026 4277.5943 7534.2216 18463.9988 148324.3702 3813.7778 11838.0372 10430.6100 9347.6544 9347.6544 12334.1231 6499.6553 2266.1381 17433.0194 8071.6186 7069.1533 2208.4423 11968.1521 407186.0579 3001.5055 5847.9190 69933167 pcag Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 3861.3512 39313.0999 7698.4227 4559.5540 24248.4625 10415.5740 26006.7857 3622.3964 11679.7256 5520.1275 5212.8692 6275.6405 6275.6405 2721.6247 7982.8345 68175.0615 52405.0368 3667.6059 6469.1004 2217.3525 4959.6744 6221.1968 21956.3246 7639.0210 3463.4713 167594237 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 159461.8093 39911.5564 20025.2188 22883.1088 5504.5773 188150.4223 56513.4271 39266.1421 131089.3544 30052.9615 73535.2629 971958.4138 47463.7409 62900.0524 82727.0277 34114.8478 34114.8478 13078.0765 50669.1834 118808.2282 36069.1084 38238.5598 26055.0332 25863.2081 37795.2545 38948.4454 65577.0359 88933.5359 42278.5547 64731.9730 28730.4207 60083.0945 40968.0679 32765.6200 66604.7383 192360271 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 15639.4243 15212.4728 10403.1087 13643.8169 27047.3679 10514.5018 14622.8755 28104.1987 5998.2662 15346.5769 16152.2510 10125.8985 318151.8034 18992.0854 18958.7842 61390.1352 9535.9698 9535.9698 18393.5539 15964.9240 22091.5651 11553.4054 20371.0960 21237.8819 6930.9193 14143.8036 24163.9371 13596.3756 25011.5643 20961.2445 19812.6460 7693.9519 9206.1921 69494.0260 7968.2575 11969.5494 116013326 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9244.0929 11701.7488 46521.4498 36177.1399 4990.8843 7001.9020 4314.0393 5450.3051 29734.8632 5713.3020 169357.9042 9283.0545 57431.5762 13558.8615 14553.2159 14553.2159 7914.3567 14399.9383 10916.3108 6224.0594 5656.6211 7041.6897 9514.7665 5364.3988 20555.6075 6132.6152 27222.9363 17095.8645 16360.2662 8368.2322 7704.8425 4921.5991 3346.4951 7248.7921 316935423 ben_bcla virulence NA NA Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7450.6096 218564196 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9144.3778 1592130.7852 5026.3282 5185.7547 3497.8115 6258.1347 5353.0375 4919.3916 67046.6051 16161.4825 7784.9623 4102.1068 9800.9893 9800.9893 3779.2803 7567.9037 3891.0872 4853.9868 6925.2361 4402.9517 3712.8326 10232.2984 30057.8963 13998.7950 9549.2547 3199.4832 7951.4924 8173.8013 3170.0789 9428.9155 198260950 ara Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 13455.6899 21533.4085 4144.2766 21237.0045 6961.1262 6466.1058 6361.3948 11844.8292 202857.2272 6570.8782 218229.4877 16431.9266 11991.9387 8094.3281 6720.7224 6720.7224 12678.7866 18986.9665 16749.4837 23750.2893 17513.6769 16222.2836 8275.1056 9626.3932 13138.7336 6457.3051 28523.9552 19222.8564 16823.0385 5168.2168 9034.4162 10728.7107 8342.5356 18373.9959 15155025 cysJ Sulfur Reduction NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 7652.3495 3860.8879 3035.7228 2958.8108 3259.6812 2594.3639 4569.1483 8989.0929 3650.1620 3650.1620 6921.7193 5184.7154 6597.8861 5286.2834 9508.3747 2272.9465 2857.7860 6568.6019 15602.7001 14212.4824 5073.2430 5485.4110 1820.1151 5362.7427 3651.9668 7028.2832 187736156 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 14799.4358 7284.2425 19013.7384 30453.5052 16184.3876 7371.9108 15147.5491 12079.4579 20550.2156 17318.0170 25330.4187 364381.6625 16988.8179 21287.1866 27705.7100 16200.1751 16200.1751 13752.0752 18780.7706 14295.7741 24357.8837 21965.1436 22216.4695 9930.8483 13037.7743 39566.5154 11139.6352 30840.0867 26266.8673 31393.2889 22938.5882 16150.0506 18326.0187 7734.4941 18807.8240 336365917 glx Carbon Cycling Carbon degradation Lignin Serpula lacrymans var. lacrymans S7.3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Serpulaceae;genus:Serpula;species:Serpula lacrymans; 10290.5903 12206.7529 4752.2488 3592.8955 4092.8511 122645.2939 6585.3122 4425.4242 7467.7938 4623.6483 4623.6483 2956.5902 6283.4904 5687.1545 11676.2508 4156.7099 2927.5991 3061.0152 30602.8286 2476.3749 8431.5479 6526.4504 8295.4522 2150.5633 5525.3398 3620.3101 4640.8221 260893699 rubisco Carbon Cycling Carbon fixation Calvin cycle Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 9161.3976 29021.1197 28774.3401 19509.4862 11078.1623 12666.8987 3686.0431 8192.3541 6896.2357 128195.2793 5594.9331 6907.6946 4475.0337 2428.3704 2428.3704 5507.4580 14419.5233 6281.8067 8073.4722 9274.0329 12584.2167 3072.7355 4338.2012 6773.3851 5693.2583 14516.3659 6564.2699 10289.7290 3611.6913 7202.1434 4850.4627 3609.2787 11490.9030 296149929 terc Metal Homeostasis Tellurium Detoxification Bacillus subtilis subsp. spizizenii ATCC 6633 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 4183.9171 22009.4468 22009.4468 384083133 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11849.5166 149775.7228 32091.1658 17151.4794 6102.1573 6688.3321 10260.7836 10090.9242 6904.8048 13272.8316 11478.1370 50820.8493 10999.9453 9029.0162 5461.5139 12467.0148 12467.0148 9161.0703 22802.1109 12890.4682 17713.5296 17034.2368 16537.3917 5742.2587 7730.9631 16676.9324 6592.9564 33270.9805 15868.9583 28060.8812 8132.3624 14655.6128 15232.5036 7580.2740 18427.8103 383294342 terc Metal Homeostasis Tellurium Detoxification Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 6269.4061 4792.4250 2725.1598 6896.8965 3481.3878 5507.3619 160815.7963 34378.5643 11280.6033 11280.6033 2881.8950 11847.1522 4921.4741 29300.7485 7414.7279 27193.1316 16648.6051 8528.8807 6736.1551 62195.9425 10476.6993 13525.1347 12029.1123 4585.2953 12464.1776 3512.1688 14755.2638 254774366 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. avium ATCC 25291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 3859.8093 7327.9506 26533.8086 5209.2538 5694.4884 3943.4144 5343.4164 60670.1359 4737.3118 4814.2119 3091.7279 3091.7279 3347.4580 11419.4414 4189.1628 8713.7455 5347.8891 4252.7511 8114.1802 3534.6446 206570.4265 2072.4200 6619.4368 356882022 norb Nitrogen Denitrification NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 6537.1196 86186.4415 5817.8014 4710.8417 8730.5434 11068.9937 7270.9408 11240.7621 23152.9308 965392.3557 6965.1467 12722.7261 45766.9313 6532.2133 6532.2133 13835.2984 17730.9711 7652.4707 22575.2778 14478.5903 22660.6195 6299.4120 21121.4368 8380.5702 9966.4651 22342.1505 15549.5855 12646.5886 4409.0213 8978.1077 4661.8837 9378.7565 13050.5273 352681651 dsra Sulfur sulfite reduction NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 12664.3420 7331.0206 15890.2926 8829.0186 11315.6191 7039.3229 5824.5252 11183.1661 12773.2994 6611.6689 342856.6848 14511.2223 17813.4969 10306.7383 6171.8557 6171.8557 8413.9910 20827.5227 13282.5158 13351.9692 27574.6448 20816.0103 8876.1482 7360.6751 17110.6769 6228.5363 29706.6134 13465.7752 17180.4738 6891.2841 8826.2110 9458.5543 7522.7588 24332.9642 62485020 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 41775.0529 24425.2510 80812.4586 102193.3637 20628.4023 59737.1366 74014.4262 76431.1145 51597.1792 64240.0843 33539.7872 937149.2853 48860.9362 43518.8499 109063.7703 84723.1051 84723.1051 47739.0409 55178.0093 295311.8508 61687.0725 81519.6838 94537.0253 27082.8506 27866.0700 58411.0483 28790.1137 81058.2165 54711.8079 57349.0086 21534.8587 31976.1258 44381.3242 86022.9752 52932.5479 378769237 ppx Phosphorus Polyphosphate degradation NA Pantoea ananatis LMG 5342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 8199.6764 7288.5997 9008.1578 101705.7407 9364.9112 4928.0254 3682.4375 4352.0234 8329.1176 6891.9375 120809.7849 24205.1646 7528.7757 10075.8282 5257.9863 5257.9863 6228.3564 19065.5681 8267.8849 9622.0632 12822.2222 17847.5532 11775.1824 5505.1345 10245.4581 5809.2653 23463.5415 7268.4560 11035.9358 5106.6756 11797.6800 9381.1342 6398.0542 13012.6382 111611621 nitrilase Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 38288.7144 25397.8976 36826.3797 129094.3065 5352.5104 4591.6178 15823.6101 17626.1752 13245.2222 53213.8406 20659.6248 156595.3261 12540.1047 31105.3605 34926.7976 50403.4605 50403.4605 7549.4810 21486.5981 8734.9019 14307.4609 23047.7731 9092.2233 9610.4445 15371.9895 16661.7236 12074.1968 22871.6240 23068.2293 69846.9309 3080.9535 12894.0963 16038.7406 5704.1024 8472.4120 118424454 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5041.9956 2436.4630 4709.2816 2882.4724 2162.4737 380302727 amyA Carbon Cycling Carbon degradation Starch Brachybacterium squillarum M-6-3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 19096.7155 6262.7795 4934.1491 15997.5473 7568.0489 29953.4247 32397.5945 42697.0456 8705.5424 31834.4504 38285.1583 122300.8834 40743.7940 9607.1282 16417.4610 33648.1436 33648.1436 9872.6370 60774.9628 10935.5452 49277.5847 603217.8308 223050.4077 139670.5708 17453.9238 18019.1622 73266.3910 74640.9788 24938.5777 33399.3035 10632.7818 16290.4523 70919.6942 9352.1938 150435.3613 323274163 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 12691.9868 13686.1458 35420.0221 11847.8994 7144.8382 10079.4323 12765.2191 12261.1829 28981.9188 10832.8340 286941.4289 14441.3088 23707.0512 23100.7444 14703.3209 14703.3209 7786.6931 21744.6568 15625.2461 9161.6966 17471.9786 14411.3718 13300.5422 11166.8015 22296.8521 23795.4385 29710.4438 21124.0385 24854.9012 186468.6252 12801.2583 18741.8032 10115.3897 12289.3099 169793364 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12214.1391 5056.4366 12515.2168 8979.0648 15607.1256 3493.8234 8964.2429 14456.6906 7294.7290 121343.6028 6025.2803 9603.0168 6391.6807 5638.0876 5638.0876 6818.8493 24472.7619 11757.9174 7565.5313 20628.8821 16875.2786 5184.7371 6092.4694 10324.8198 6278.0606 23458.4866 7190.4424 14289.7212 7296.7340 8032.2160 134845.6167 16015.9898 16942.7340 198262255 mer Metal Homeostasis Mercury Detoxification gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 46315.1644 36492.5145 43444.8700 61906.2025 24124.1386 30384.1939 77475.1267 22946.7922 46895.0505 58949.7312 139961.5340 850630.5277 63081.9967 67722.4331 103966.3036 47817.1812 47817.1812 84186.1367 79621.5800 105190.2819 50440.4755 63711.0248 54690.5022 29962.3861 39530.8681 82670.7802 63693.4800 161857.8457 64861.6759 67385.5300 26179.3805 40692.1080 71136.4260 41506.4061 60706.2110 333024311 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 68474.0113 210708.8817 25824.4645 41242.1226 6803.6679 44054.6820 41998.2437 25502.3527 23586.0691 58534.4099 27873.2721 646370.8903 39478.4061 46264.2291 81181.7747 26011.0573 26011.0573 45256.8996 48001.2356 45269.6843 58450.6644 60100.0679 129876.5525 20491.7805 85388.2021 54103.9482 43349.5259 52023.4698 64409.9995 92801.0616 27814.2042 24155.6059 41558.3053 44435.5374 74289.2607 8515781 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 15379.2336 10944.9968 100399.4894 18287.6638 39875.4705 16112.3522 9022.2810 18481.9519 17435.3629 9982.3783 417475.5411 49931.4809 39677.3118 24937.3351 8646.2165 8646.2165 16675.0559 27966.5196 21647.7783 18580.3123 22867.5315 17601.2134 12362.7753 8551.8029 24608.7483 10450.5539 39983.1872 22684.1598 29593.2537 14180.8266 15799.5753 24900.7674 12722.3061 24956.6847 302912547 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4014.9108 7227.3759 8451.7219 3159.7692 3938.5375 4272.9106 5565.5394 5110.9415 4177.5653 4025.8467 2221.6182 2221.6182 6502.0681 6604.2240 3955.7598 12421.5332 3961.4707 6001.6365 9975.9241 4823.5154 6836.3812 1833.3896 8542.4677 4665.7664 5102.6600 363984517 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio velox DSM 12556 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 6382.6560 8281.7474 6131.6978 2956.3572 4160.0707 18916.6821 74707.0176 5871.7971 21717.7200 2410.0474 2410.0474 2766.6946 8528.0935 3986.3221 5561.6848 2585.1426 2912.0375 12148.2255 3959.3047 32538.5412 13127.7489 6116.2936 2427.5739 3155.1893 3988.5338 379988979 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 16040.3408 11404.3099 17644.8151 14976.7367 12630.4409 9081.0030 10196.7157 14200.7419 13965.2009 7761.3649 412908.9618 19777.4265 20408.0944 14621.7231 8096.7277 8096.7277 13783.7733 22435.3220 15063.2223 14772.0584 17521.7417 20086.9498 8528.6100 9814.5035 17925.7472 7245.6216 31546.7992 16355.9737 20731.9681 7626.2562 9603.5173 12245.4853 8457.7066 22604.3989 241190289 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 9169.2220 10628.6512 13710.5272 21363.0806 7487.7393 24488.8195 9864.5477 8075.7949 6449.4950 169418.0546 10728.3554 9204.9320 8292.2154 4307.9479 4307.9479 9262.6674 20253.1438 14350.7975 18876.1942 7749.4678 14335.6732 4104.3567 7725.8193 10391.0417 16707.1341 25939.9580 8290.2903 13443.4763 9241.0803 9154.2634 10687.7124 8346.0219 16395.9794 303296208 ppx Phosphorus Polyphosphate degradation NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 53726.4206 30398.9741 30653.6780 57483.4843 55154.7521 7683.1628 78224.1224 53964.8910 80865.6026 41342.9812 65499.0270 28075.9359 1113737.4430 58334.8914 94660.9877 56150.6661 32918.3313 32918.3313 39431.6911 68971.3913 48489.7688 207626.1357 77957.8982 66262.3084 30409.1883 25246.9778 54768.3668 31552.2707 141278.5843 63233.6801 66960.6693 24121.2340 36642.4000 33956.8745 35212.3313 119572.5230 355357326 nifh Nitrogen Nitrogen fixation NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 13760.9726 14304.2035 2540.2795 2740.9872 4222.9464 5748.6375 8674.6513 8264.3516 99480.8938 5901.2642 6892.9593 5287.0860 5287.0860 4615.6568 10961.8680 8173.5298 322998.7040 11122.3636 3595.3863 4455.4808 11149.0970 34763.4052 22672.3825 9139.2428 10663.4010 4600.8047 5739.0253 8286.8820 8617.4974 9650.4901 151582326 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 56109.6397 17955.2926 25103.6990 43413.6341 27311.0889 19833.8116 27868.3049 21937.8898 26373.3249 14167.5461 521539.2479 180447.0137 38350.0894 85419.6583 30450.4333 30450.4333 15513.0069 34072.7640 35542.3232 22952.7582 20813.5972 17926.2859 31865.0915 24167.9823 64478.3637 35503.4255 102814.7569 48665.5747 34022.1961 18081.1996 19814.5607 88591.8414 11169.8525 19268.5562 167348194 tfda Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 206830.4643 13006.4025 121228.1756 22185.5883 38488.2104 9515.3338 14640.7758 13808.0597 9196.3295 17328.2745 24151.3764 13370.1934 533178.9757 35173.4754 22691.5541 17017.5536 22366.4653 22366.4653 24952.4872 30943.5093 22396.6616 39651.1285 22821.4304 31908.1517 16669.2147 49337.6547 23137.0264 12320.1523 49253.0465 19396.6640 55893.2786 12032.5858 24715.5671 22505.9409 21438.5110 40182.1778 197782333 hbh Organic Remediation Aromatics BTEX and related aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 40866.6420 3368.3198 13838.1729 4776.5399 2423.5427 2423.5427 13387.4097 4081.7761 19000.5481 2430.0484 3127.2483 6490.7440 8227.5244 7524.3549 7575.6622 1848.3793 5565.3267 149187622 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7498.9602 9602.2331 3416.1266 4707.6467 2661.3666 5719.7863 7169.3940 2885.1337 139373.7406 6596.8272 4680.1259 2952.7855 2952.7855 3899.3947 8893.5485 8262.9424 5690.7976 6443.5516 7858.6434 3407.3561 2830.2068 8070.0261 4389.0319 11595.1578 3726.3767 7197.3253 3169.3886 4207.1411 4315.6435 3772.8579 9185.0089 159145955 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 59236.7392 465521.2198 41340.7758 40366.2743 60350.1090 18562.9042 72105.9740 36629.9551 47496.2915 38702.8515 44583.6117 54729.8473 680757.0178 68994.2308 55461.2855 156662.9103 144747.7105 144747.7105 34560.7896 71326.4571 41351.2276 44961.3367 64428.4211 131473.4682 34271.4449 32504.6501 64633.9868 34150.1260 89375.6132 88097.3891 63242.8915 253491.6969 63415.5246 43657.3158 56898.7921 54484.1592 169189944 urec Nitrogen Ammonification NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6318.7896 5498.5462 4587.5924 3469.8438 4573.5646 6471.6290 3257.5770 79128.0907 6150.4829 5922.7015 6248.5861 2494.9405 2494.9405 4451.4356 13126.7124 4867.6032 6528.3651 7797.7610 3489.9338 3029.9383 8428.0305 11011.2224 13877.2465 6746.9735 8060.6375 4981.0049 4992.4082 5369.6625 49686.0596 6959.9831 386788555 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 5281.9449 12225.5772 6973.0280 12435.7851 3290.2610 8917.4267 2775.1651 99087.0379 3949.3608 3912.2336 6854.9465 17146.1574 17146.1574 20596.5390 8172.2178 4331.2190 9836.3680 8912.2020 12047.6587 3318.9470 5142.8926 3967.6877 39629.2068 4180.6318 8587.6718 4491.8160 3741.0937 7315.2407 2606.8732 8480.0921 294884099 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA10_4W superkingdom:Bacteria; 14252.0683 3102.8308 3074.5404 3754.2331 131125.4796 2731.3033 3934.5310 6636.0164 4471.1141 4168.8273 4168.8273 7083.1769 128072.2349 9374.3292 3667.3728 9136.8470 11290.2438 7804.7701 5548.1518 3692.4288 10557.9839 5648.0090 163667975 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 8275.6996 5337.6146 7202.5504 20345.7169 6659.3506 7754.5766 4283.8340 7455.9347 12466.3688 6123.8016 189613.2690 11131.9490 12604.3126 13687.9519 8731.8493 8731.8493 7621.6062 13362.5686 10350.1819 8321.0446 13219.4221 8701.6937 4582.0086 5583.8700 12267.6745 4817.5011 20102.6428 13794.4693 14686.9900 5109.6704 5389.1451 7503.6618 4360.7960 9315.2849 309776613 amyA Carbon Cycling Carbon degradation Starch Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 50444.6235 30992.9441 19296.8073 86926.9891 14397.2153 11717.8524 15387.9846 36943.7483 145687.3566 30503.8162 48285.8354 333234.6471 32389.1396 33099.6906 45183.5359 20321.6801 20321.6801 12946.7245 30061.9938 18428.0531 32342.4127 31109.2543 74319.3903 18848.1464 20154.3525 37031.9051 12840.4266 58679.0612 52011.1223 32736.7426 10334.1046 19594.0378 19377.0272 10054.3003 29272.7214 189340940 b_lactamase Virulence Antibiotic resistance Degradation Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 104048.2428 44657.1531 17417.3057 133055.1985 5047.2897 36534.2763 29834.7852 46065.0979 41550.5639 35484.5339 61720.7302 408746.1680 34603.1446 71723.1647 48278.3326 45595.8761 45595.8761 48343.5229 66840.3299 53485.0789 56249.1759 120662.4853 60446.0927 25706.3719 35702.1693 31752.3954 28125.2004 132735.9466 36924.5138 49070.8436 45882.3746 48455.0101 49132.5476 32748.3749 58771.5598 384136297 ppk Phosphorus Polyphosphate synthesis NA Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 54622.6570 195914.7668 18026.5354 10930.9745 14986.2797 10243.8727 10211.7295 29451.9905 10276.1177 22747.3226 14581.8534 281911.1393 8603.6670 13235.5819 38883.5214 10711.0228 10711.0228 7067.7325 22539.2115 11910.5802 54842.9660 34180.5689 16574.0505 9461.4298 8635.5417 18358.2205 13166.5221 77075.1355 16765.5771 304462.6276 9538.3764 14367.7380 15976.5382 32245.3491 13156.6151 284989854 bend Organic Remediation Aromatics Aromatic carboxylic acid Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 376894.4319 93298.7533 1024504.5000 246333.3563 188995.6585 2059806.0413 339976.0983 540441.4462 176234.7494 186146.6096 353710.4030 198623.6288 4768824.9215 231088.0273 420970.1980 467119.3097 299896.5644 299896.5644 173808.0079 340927.4914 172913.5280 245757.7914 452010.0779 248333.9935 204533.5033 155028.3234 414638.6181 201931.3298 524836.7317 299219.8349 354928.2973 202857.7190 176785.4867 222006.9580 161694.2687 366762.3920 261607342 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 10597.4598 6804.0310 11695.0552 9707.6565 9808.0023 4032.2958 10586.4178 23913.0825 5215.7299 216486.9005 12957.0327 14549.8427 7461.8192 5514.2411 5514.2411 5476.8962 18039.7424 13149.2721 13778.4125 17358.6213 26136.6332 6671.5019 6610.2254 14735.5966 7889.7561 22694.6380 14210.1663 21716.1749 7984.4443 16993.2060 8404.1592 8156.4350 18970.7479 302419411 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 3774.1790 7727.3138 5114.1971 254449752 cysI Sulfur Other NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 16339.9948 9794.4351 8024.6773 7591.8714 60353.7242 392732.6723 21144.7240 14340.2547 18378.4433 12101.9037 391195.0528 25277.8730 227519.0604 20868.2767 37283.8355 37283.8355 51546.1279 32807.5022 28558.4427 37605.3551 60750.4310 21114.6341 10676.4119 35834.1382 20351.7839 309563.1222 53250.2504 54092.9846 27139.4299 94717.2590 26962.2220 19737.3474 30563.5653 128052.9734 239800012 amyA Carbon Cycling Carbon degradation Starch Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8846.5010 4606.0217 6165.8208 6108.2888 4993.4654 7112.9873 2120.5488 6356.2239 5491.6438 3890.7504 124535.4943 7844.0600 12140.1150 3670.9174 9473.1610 9473.1610 5479.5668 9448.2602 6330.6931 4304.6151 5137.5634 8188.2499 3444.9002 4214.0468 9449.1959 4809.4151 21164.3721 6207.5106 8218.1048 3406.4960 5586.7016 5954.4709 3388.0398 8032.7481 342316470 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3645.0311 9367.7096 4928.7835 3506.9844 2522.3331 4694.1654 6220.7757 2336.3209 111688.3104 5847.5233 3506.0047 5076.7682 3128.1518 8225.2950 5382.6095 23216.6483 4203.1876 8898.9098 3082.6879 2661.8507 6628.7128 2659.0030 8794.6832 4412.6063 8364.1716 4861.5472 3489.0332 4533.1873 2829.9077 9914.8099 282569826 nitro Organic Remediation Others NA Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 17578.1754 1915000.8961 10945.1204 4111.4664 4853.8401 6117.6813 24919.4976 14410.0195 4842.0383 292754.0404 15260.0258 14996.9470 29387.0422 8281.1173 8281.1173 6363.3786 18050.3585 13124.4136 8569.3213 25782.5988 15893.5656 9542.2153 6114.5857 14129.6658 6666.2729 23006.9665 13211.0582 15530.4711 15642.1938 7831.7919 9307.8998 6462.0931 16612.2576 40313563 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 13682.9344 5288.9022 9310.3402 18972.5268 5783.6325 12457.1425 7364.9296 17504.3423 9673.7398 10230.6597 6065.1578 208142.4776 14539.8331 13479.0941 9546.8725 7907.2426 7907.2426 8329.4637 19790.8830 12655.9727 13741.0968 14920.8023 14542.2503 6601.4476 6881.7611 16528.9621 7880.2527 25352.9827 14547.8315 19552.3449 9731.4982 10502.9188 10043.8015 6615.6646 19081.5506 208605080 hzo Nitrogen Anammox NA Nitrosomonas sp. Nm143 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 13768.7049 6729.6157 5100.8865 3427.5883 3612.8780 2354.4267 6110.0301 10110.9562 4556.1773 106302.2763 4879.7846 8280.5282 3192.5706 3192.5706 3957.3831 9358.9937 5108.0269 8342.3181 6515.5103 4239.7505 4489.2388 12293.0030 2944.3633 19071.2846 8419.3267 8687.9631 3347.3362 5463.9309 7122.4612 3956.7995 10044.5791 86565791 xamo Organic Remediation Other Hydrocarbons NA Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 24844.2952 51314.3662 5966.5231 23171.8944 7191.8741 19172.9918 31626.3241 31633.9365 25907.2129 98027.6552 17993.2070 385103.4702 18390.7645 32977.6587 34285.1700 16132.6093 16132.6093 25194.5007 27906.8885 105981.9558 18391.8161 27045.5701 81459.3277 12073.3678 25194.2009 29291.2307 19588.8641 45522.9149 24752.7788 25390.8569 18562.1570 28370.3735 22199.8177 20791.4267 21256.6854 375364167 narg Nitrogen Denitrification NA Bacillus amyloliquefaciens subsp. plantarum CAU B946 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 13609.1932 7587.0713 11580.3457 12762.7570 12998.5232 7211.4251 9066.2598 8183.0095 13577.4256 11793.8624 5147.3071 252205.1211 14923.7345 10648.3494 10266.7924 6124.9288 6124.9288 8049.6719 16419.8959 11253.3925 13880.3050 12762.7374 17816.1763 6817.8601 5789.8708 18317.0102 7105.5889 26921.2898 15058.3082 16488.1821 8057.5699 7515.2087 9361.4648 7229.2673 19480.3450 319996161 nrfa Nitrogen Dissimilatory N reduction NA Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 8998.3518 6917.8292 3971.0359 8193.0765 4047.1016 3790.2250 9581.0276 11506.8958 4546.4130 191867.8951 11620.2551 7634.4036 7092.5650 2017.5597 2017.5597 6732.1335 15618.7231 12632.7781 12406.5837 10117.2217 8793.4644 4351.3103 5086.0976 11722.9991 5580.1761 21406.6445 9442.1225 12429.8115 4839.2464 5799.1844 7434.3551 5496.1511 335313.6676 91774818 amie Organic Remediation Aromatics Other aromatics Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8088.1818 4478.7559 2442.9884 4381.9678 2353.0609 6509.4138 66801967 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5233.1838 4100.5634 4004.4951 3661.6105 53636.8393 5845.4728 6048.8978 7656.4161 80853.5654 14015.6966 4194.9321 26596.8302 4749.2534 4749.2534 17189.2068 18625.2016 12008.8507 34252.5765 18988.3415 10311.4146 7660.7920 10083.6593 14817.7675 10956.9756 23502.3333 6731.5134 10974.3799 9997.5499 13915.7910 13660.3401 8562.3360 8558.5019 56609518 pel_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 626980.4447 229928.9312 742933.0528 1522758.6075 437164.7715 748978.0125 734288.4615 460124.6932 793796.9938 349666.5049 673340.5777 358840.5518 9912666.0302 500117.4852 648680.4861 1356675.0733 584417.9708 584417.9708 251174.7338 606431.5000 294630.3596 817714.7025 791937.3686 893825.9771 318427.0836 243816.3403 375362.6101 276345.8374 895528.0929 574665.0273 395249.6775 392039.3928 294643.9706 321476.6729 259567.9931 1437030.2249 61224796 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6360.9435 3438.5993 2706.9508 2356.4252 13608.4624 4025.7200 69044.8300 9208.1264 5194.3790 7172.8547 7172.8547 13881.4268 9033.7257 4719.9617 7672.3990 2487.9515 6961.9905 8654.1075 21050.3029 6677.7436 2645.4676 3977.6540 3220.3268 28971823 nagg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6403.5755 69781.7684 34311.7096 12619.8647 5778.5058 2991.9419 7026.6458 4095.2347 6908.6815 8437.9247 189109.8717 7970.3632 8228.0212 7788.7245 4890.8866 4890.8866 18236.3749 11241.9632 6934.5632 5808.0988 7853.9727 6928.0361 50787.3446 9103.8497 12545.2029 7656.6666 15967.2312 9187.8366 12991.8557 4083.6146 6194.9485 6839.8009 4093.1047 9763.8506 26278770 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 78287.4880 22404.1325 55972.2149 46137.5176 137850.3620 21759.6758 43986.6232 50692.4038 40463.5811 44559.1149 62855.9229 57611.2158 1778021.4877 51059.7874 136811.1826 186187.5109 63112.8168 63112.8168 42546.1520 109049.0888 71162.0339 433165.2956 86815.0241 103279.4360 37383.1351 39793.5442 76320.9309 51419.5035 126586.5127 156895.6506 77459.8653 40207.3491 52330.7875 200644.2011 53178.5107 103356.3532 312922966 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5353.1067 45893.7401 9288.3254 15979.9412 440556.7367 3225.1669 14111.2278 2272.9884 4168.5313 12318.6147 6057.9490 68971.3340 7882.7072 6120.0216 15333.6614 3080.7779 3080.7779 2986.2782 13729.4500 7971.2516 7632.9267 11906.6205 25687.5092 57459.1142 4722.2506 14504.0546 6068.0367 15535.9978 16047.6013 13685.7939 4449.6265 8998.6868 8438.9485 6760.8346 107856921 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 68776.1899 31682.7480 17623.0537 10406.0387 21893.3339 22162.9746 118108.1141 110065.7347 28769.0583 84085.5391 38554.9179 514282.4408 58683.2448 30212.1287 66783.5765 47942.1890 47942.1890 14658.1738 45053.5124 32341.8423 35714.5261 56460.1160 29783.6431 20976.9767 27582.7299 31066.5637 35314.4054 182776.6236 38417.7288 82445.2140 54841.8359 90364.8154 67949.1427 21289.8949 27688.8078 254386270 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9117.7481 6691.7799 13304.4865 2834.7013 26040.0111 4028.9325 10271.6009 728717.6656 5651.2875 19209.2036 13145.0615 13145.0615 3332.2097 5894.7366 5249.7360 6701.6921 20604.5276 6304.9846 11976.7867 5527.0832 5724.7000 13682.2123 12154.0154 6343.5970 4924.4746 4286.7938 7385.7849 4520.4617 116624723 xylanase Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 53995.7653 18880.7692 9156.7620 59177.7890 19098.0497 20523.3072 34937.6713 5204.6394 11401.1986 21518.9523 23720.2734 21957.1991 20572.5973 22291.6656 39550.0260 26778.8762 26778.8762 14425.3324 45182.3923 35788.1167 76859.7095 56564.3485 59711.5132 16278.8860 30238.5889 40446.6298 21369.0545 162174.9561 77390.6476 57681.0170 22737.6369 27095.7850 20379.7157 18631.1509 88859.0715 254384877 ppx Phosphorus Polyphosphate degradation NA Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 31096.7178 6250.8763 1917574.6152 8833.0445 14517.1708 38094.1992 8058.8194 7521.9761 5904.1488 26519.1135 20750.0093 344622.7471 10539.1833 19986.4162 9399.0824 29104.7363 29104.7363 11870.8329 20297.4259 75827.8483 8795.2068 22782.3113 15067.9371 24535.2897 20289.9771 11452.3738 9526.5218 31139.1375 11081.2135 38563.2319 4851.5170 10680.7232 48059.9386 11577.1769 22996.4540 304345270 terc Metal Homeostasis Tellurium Detoxification Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 4803.8318 2104.2360 16128.4860 80436.5687 9708.3057 6249.4124 4762.7626 30432.7240 98771.8770 9446.0292 2928.7737 3271.4976 283815745 poba Organic Remediation Aromatics Aromatic carboxylic acid Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 15528.8693 13876.1647 7253.8421 6631.9369 13291.4713 15124.9458 11986.2057 8695.5014 9712.3417 6211.9097 9053.2206 5083.7911 148539.0101 8122.9258 10342.8891 6542.4289 7868.8653 7868.8653 5060.8316 15268.2425 11021.4874 7296.9539 10145.6416 28127.8863 6163.3559 4576.4392 14253.1609 7181.5177 17126.6060 8603.4202 11087.9714 6838.6256 6389.9344 17106.2932 4917.3321 16209.6155 375255885 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 7135.2085 7125.5411 8094.7530 5903.2783 6895.3628 5441.4231 6324.3788 3794.6492 104068.7038 9998.3650 9913.4476 6201.1978 3349.2945 3349.2945 3202.1333 8632.7251 6674.3222 7572.6213 9991.8311 4671.7040 5056.8427 6954.1003 10083.7163 23252.4262 11991.5027 5107.8009 9255.0654 6049.8016 5254.1802 9364.2452 4622.6766 10359.7113 109290305 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23403.1525 21982.4967 16922.8284 20229.6326 26188.3741 8823.2700 19611.0271 12387.6780 13711.3264 18692.6342 16273.9159 8695.1570 538993.5691 18381.3488 21130.1111 20475.6365 8984.2899 8984.2899 15152.8977 29738.0260 17107.4470 18487.1876 25295.9983 28190.3813 10583.5067 12514.6109 27006.5514 10623.5223 46478.9178 16274.2859 26708.7179 12072.1080 17821.1000 11888.0965 13927.5791 37480.2445 395008235 linb Organic Remediation Pesticides related compound NA Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 25733.3900 12779.8858 11122.5050 58888.3505 10848.7884 9824.3383 11870.6866 23789.3123 12865.6983 94754.5897 30711.7574 204841.4437 47604.7300 31120.7726 46968.1050 28641.8381 28641.8381 16944.0800 47160.6365 22296.0299 19622.6281 74719.8004 21159.4026 14345.9302 19835.9682 28014.2964 14882.5777 111048.9913 19339.3867 37792.4380 9679.1022 23932.6861 57952.0982 13508.3081 92247.5307 71002270 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 5825.0126 52844.5474 12448.9059 4077.8726 3602.8213 7252.8153 7847.0075 138940.8096 7639.3174 13628.1581 6048.7801 4108.4940 4108.4940 3604.7946 10770.8822 7622.1231 10209.3637 7243.9887 23163.3259 3222.9104 20242.5200 10729.5435 15880.9941 3522.6419 5075.9629 8558.7452 2917.5619 114316760 exaa(moxf) Organic Remediation Chlorinated solvents NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 155571.1419 10705.6603 4872.0123 7286.0425 5891.2548 3834.8079 3834.8079 7515.9219 5296.8913 4491.6859 3202.1256 6430.5398 3032.9107 12769.9129 7245.3757 2841.7466 3443.4598 291197190 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5394.9215 16151.3979 3995.3381 4013.0665 4422.3790 4023.9202 6384.8128 6762.9574 5013.3102 77810.1639 7281.7837 5696.4936 2450.4509 3333.6888 3210.6660 2818.3607 7065.2045 133914413 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9840.5314 11771.2884 5604.2294 5604.2294 13554.5155 2562.2530 21340.6231 5441.6644 10733.9623 8803.6957 8360.6942 5538.3329 179346864 SoxC Sulfur Sulfur Oxidation NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 306010.4204 116443.6726 209152.1980 181464.7247 342547.0048 865515.8770 149802.1650 224444.2399 101082.8334 147771.8726 152098.6165 132601.1601 2553115.9306 193090.2403 321381.6473 294265.3447 212364.8829 212364.8829 97125.0754 166161.4814 113789.8486 184206.6503 363509.7603 93380.6961 109911.2086 117440.4860 204829.9383 287272.1504 295147.4793 290445.7245 186559.2902 104104.6180 131381.8470 149760.1706 98508.1049 148569.8497 334141073 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 19182.6146 7605.7542 26533.6724 84952.8159 20245.1110 25026.4322 8026.2293 41225.1306 19975.7400 21522.2223 159145.3470 12727.9096 28702.5937 30836.1396 13584.9093 13584.9093 6829.3742 34206.2033 20726.4416 43851.6511 13356.9440 15987.9209 10843.4978 38076.0742 18618.2637 19422.7079 49353.4533 28027.0499 29141.0703 15477.0541 17906.7638 22114.9519 43320.6317 33946.6932 169793402 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16819.6621 61953.2060 13113.8650 12747.7349 15336.3045 5215.6174 22315.4360 13546.1656 54502.7583 13859.1978 28578.7820 21365.8509 559374.2431 22173.0989 12595.5801 40050.0273 20321.4538 20321.4538 15624.7203 30516.9231 16258.0434 41295.3966 33516.9956 16043.2746 10144.7392 32366.2299 19418.5452 15570.1076 42275.8974 269458.4679 36192.7856 23477.2513 20799.5191 18942.0904 12331.7716 12939.9058 124389563 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus; 8159.5314 116239.0653 11165.7597 13388.8984 6529.2780 7579.2982 88965.4327 7697.7343 16409.9673 4694.3417 1258415.4637 14570.1833 12503.8874 16064.8738 4106.4951 4106.4951 6920.6326 14156.1870 8510.3030 12960.3579 11575.6878 22701.1359 10303.7379 4820.2920 21444.7558 4044.6935 22316.7149 17963.3173 12401.1118 6219.0706 7362.1884 8938.1117 5112.6335 11997.6757 106771255 phn Organic Remediation Herbicides related compound NA Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6832.5099 118431262 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 14836.2582 5428.8232 8598.6454 11589.6848 7096.6210 122972.2186 4912.6692 6039.4744 4976.2267 11554.7907 207844.9356 17837.9034 12317.5944 10753.8122 7681.4674 7681.4674 4961.7851 13796.7289 5609.3250 14540.4229 19031.5034 9021.3504 4411.8949 69931.7375 21147.5512 4273.6554 23027.5892 10161.0242 12702.3754 3802.6901 8219.9210 10552.7559 6715.5345 8152.7835 224027836 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 399703.9935 27258.9263 33138.2415 1595545.2117 371755.0800 47482.4089 71057.3097 691085.2157 63407.9358 127477.2750 144222.4513 97533.3624 3268280.5886 110574.3200 192064.5983 125687.4100 106470.7429 106470.7429 64759.1759 101539.9485 95883.1251 224107.5263 139768.5135 81899.7536 188078.5450 76530.3846 1029917.9441 243826.6669 219817.9997 454000.3534 114310.5624 46717.6280 63561.5972 72453.5124 375510.0412 1133069.9389 306530698 xyla Carbon Cycling Carbon degradation Hemicellulose Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 81089.4360 10325.3143 32536.9991 88149.3258 41478.7794 108475.7521 90602.5863 112804.2339 15873.9915 66712.5881 59323.4741 34530.0711 932340.0041 37150.0024 38277.0263 45917.3742 28617.5498 28617.5498 36508.2223 61185.9066 39221.7860 48993.8819 43673.5485 55649.7795 17991.6081 24112.4929 43469.5487 52598.1898 80336.7281 51857.7173 44327.6658 28945.9524 23877.0063 32110.1755 25893.5891 71665.5403 226943373 cysJ Sulfur Reduction NA Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 414248.4209 30904.0038 31766.3999 10161.7800 40650.7182 46515.8154 137761.2915 293952.2143 72492.0397 49656.6313 906955.8105 38630.7546 48144.0997 52119.0495 56101.9652 56101.9652 53492.8518 153176.6508 43156.6427 84039.0928 155351.0668 1117659.8340 57204.2488 35534.4910 44711.3132 70216.6804 207950.4216 74336.2760 116175.1811 49419.4066 63919.0535 57907.0257 52224.1089 55888.5394 300023953 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 9637.1271 11524.0338 5790.5528 9887.6463 2458.4882 4255.3796 25694.7329 11252.5291 71178.1901 4829.8142 5756.2120 14188.9438 2671.4365 2671.4365 2958.1996 9501.7341 5328.4096 7421.5199 8154.4827 3249.6845 4096.3466 8371.7102 37330.9933 12794.9571 8933.8747 12333.5922 3252.5705 61568.3797 4255.4535 3086.6659 7017.3063 254241309 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9242.6625 125357.9633 123977.4175 11352.3168 7661.0087 2624.0193 9461.6853 8574.6530 5257.3916 123907.1334 7132.6467 26445.9427 22891.5215 5151.3281 5151.3281 6075.7487 10598.7019 6785.8729 10314.3715 10749.9407 3905.9453 6622.3884 9845.3624 9325.2396 4702.1158 16808.9419 7226.6346 13711.4395 6194.7639 6192.5272 6709.6125 4699.2907 11251.0070 139003215 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5545.4668 19805.1881 4492.1158 16248.6899 2581.0658 127143.6182 6269.4989 6111.6197 6111.6197 6144.0943 4690.1006 5238.2715 4048.5949 2742.0571 8901.9767 7792.6066 5535.1816 9349.4812 4043.0493 10427.0781 3129.5942 283807805 hdno Organic Remediation Aromatics Heterocyclic aromatics Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 41054.0750 15523.7381 26880.8455 34504.8220 28649.3652 13773.4251 30129.3374 28156.3702 14440.5615 28316.7161 38020.2694 15006.7406 927747.6090 40120.8506 42379.0112 27432.5489 17906.1057 17906.1057 25166.8752 50889.5095 32222.9900 32883.4040 38216.2399 63875.8713 19021.3398 15740.9605 48574.8753 17808.8063 63530.3338 35929.7191 43552.5368 16299.7873 20709.1627 23879.7017 14250.9000 48685.8252 307551403 dsra Sulfur sulfite reduction NA Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 22504.2029 16348.8991 11697.9399 25311.5845 19091.8512 7091.8228 22032.1090 14285.6202 13510.7800 20742.1219 22733.1230 12870.9310 897018.0519 27078.0737 22791.6202 38124.1678 16572.1426 16572.1426 18432.7415 23902.3156 19456.5240 27144.6220 27343.7630 28601.4886 14680.3435 14489.3870 25157.9183 18396.3084 46856.8512 25100.9452 26369.7495 10251.7926 14497.5286 15608.7564 11168.4310 37133.4136 409388969 xylg Organic Remediation Aromatics Aromatic carboxylic acid Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 22542.4971 329956518 pme Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 10270.1111 6068.8502 2420.3152 4045.5549 3683.1473 3566.7749 106170.7929 5700.9646 9821.6296 9572.7349 5277.9297 5277.9297 4266.1865 10288.4220 6083.9441 6232.6847 9243.5513 4417.2095 20716.5067 4983.6633 14043.8996 31744.1892 50100.5850 9237.6157 9987.8034 2844.2714 7700.3902 8082.3915 3742.6113 7783.2640 400191709 arylest Organic Remediation Aromatics Other aromatics Morganella morganii subsp. morganii KT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 13636.3966 9550.5082 4452.0342 5386.8488 4071.6937 4075.1713 8538.1110 9347.3216 5562.8261 74342.5258 11544.0932 6839.2487 4874.5607 2973.0147 2973.0147 6440.4295 12051.7646 9086.2997 11065.5028 12053.2362 7910.0716 5577.9499 4853.2891 11709.1241 3189.3224 14621.0373 4254.3326 10506.7423 3309.1877 6450.5987 23948.7533 3925.4626 514502.3398 339325908 quinoline Organic Remediation Aromatics Polycyclic aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 44931.2156 27859.7186 34469.4056 33054.2461 32453.2120 6601.5177 188581.4121 44703.6776 76269.4493 29295.1630 43456.2505 53176.1555 537855.7516 36329.8090 35403.4469 35842.0061 27766.5793 27766.5793 24097.8790 65266.3829 34832.0237 30957.3767 47997.9719 49682.2090 25931.5421 20027.4855 112154.8161 35118.2121 171543.9845 43204.3261 51866.7799 43428.6262 26373.2289 39699.8396 20635.3854 48938.3392 206576326 nirb Nitrogen Assimilatory N reduction NA Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 25251.0650 16480.0561 10660.4833 22705.5173 4499.4744 18473.4476 15141.7647 23939.6284 15349.0678 16938.1742 18773.9772 453787.0728 25211.5181 33783.2562 41352.1992 42989.8743 42989.8743 17084.9442 37886.7438 31891.5360 26899.6915 31158.4142 14905.7809 29634.8787 20146.5415 36772.7879 19506.4201 52994.0383 37523.1876 33407.5705 11030.6818 21624.4951 27714.0405 15094.0624 35125.1870 375109265 pme Carbon Cycling Carbon degradation Pectin Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 36432.7846 68246.2564 56263.2836 13587.2231 14909.9567 5112.3205 307947146 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 284553.7002 11601.8072 10389.7496 25913.3390 11312.1617 51347.3314 29660.9416 23304.3571 51238.8349 37253.2354 108356.9609 378339.1359 28072.6022 29305.0762 44766.0729 102257.9485 102257.9485 39015.8644 41295.4397 22287.5959 138324.7791 29600.8375 18443.3042 199950.6778 22871.8224 42786.1058 14185.9423 85676.4906 23577.2335 61892.6297 26190.1407 27042.2591 167687.8293 36563.1889 40631.1393 365181213 catechol Organic Remediation Aromatics Other aromatics Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 10023.0433 15288.9826 41973.8151 4854.1005 2384.5910 6572.6190 22353.7657 634351.3886 6519.9621 10515.9315 10515.9315 5201.7855 10212.4725 5114.6772 19336.8823 12406.5322 6849.7890 3861.2648 3085.9826 8515.7391 4507.6367 23321.0538 10827.9832 9210.5438 4503.6941 4978.9834 10008.0162 4370.3169 18931.7847 261876697 mannanase Carbon Cycling Carbon degradation Hemicellulose Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 4397.6145 4723.0785 12704.5717 5487.2644 12880.4196 14379.6736 13485.5840 14347.1145 8219.8458 123024.5905 10506.9583 10644.6074 14724.6839 7001.6691 7001.6691 10420.7896 33777.4630 5436.1265 6515.4280 4964.2677 5263.5803 3490.6442 4200.2778 13472.4049 156979.0773 16080.0975 10854.9614 9851.6954 3182.6105 9807.7889 9838.3355 13490.4015 20928.5561 374367149 vana Carbon Cycling Carbon degradation Vanillin/Lignin Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 26071.7867 40691.4690 21754.7377 26049.2248 21260.8265 18367.2855 29389.5085 35518.9378 14559.4753 517239.2121 13889.9626 24983.6419 22064.9757 18553.1467 18553.1467 18742.7056 29918.4316 24022.3791 14375.2875 21391.9233 39113.2033 11785.8065 21144.1000 25110.6869 18169.8437 50127.1597 30055.6229 36209.1569 12025.0493 42672.0958 22344.7061 16708.5575 22325.9930 256668779 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9118.1767 15826.9202 2330.4436 4959.8775 3953.4890 3870.6828 374480.5676 3689.1419 3689.1419 2926.8056 17065.1108 7928.2634 13433.3848 5177.8341 6036.3045 7694.9560 5199.7947 9466.6270 3346.6111 11679.0707 9600.4394 6554.3189 3591.7007 13041.9226 5761.2312 4556.6492 7612.3092 398352956 exaa(moxf) Organic Remediation Chlorinated solvents NA Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 46127.1032 9676.9953 2237.9846 2799.5822 2682.1478 54778259 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 12732.7750 24643.1824 7672.4924 7994.3775 2263.3076 8783.9643 7470.7499 6107.2215 25481.1192 5798.6659 78182.6564 9277.7931 12836.4673 5892.7007 10378.2654 10378.2654 6247.8213 16549.6541 9046.1611 9449.1460 11520.3428 8054.0958 3720.6037 13703.2900 12655.4017 7075.9068 39539.3197 10104.6946 13098.5783 4524.2159 7776.9754 21806.9945 159410.8137 10024.6081 357053263 cda Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 6029.2353 2061.1386 6036.4660 6736.9871 9332.2271 4578.5740 3714.5170 88446.3316 15100.3733 15875.6601 10814.1749 3668.9601 8062.9833 4740.0397 4303.4781 3174.4210 6093.6171 10218.4943 9140.4983 4313.3162 7744.9429 3041.1259 4060.2804 3702.3913 2535.3795 7584.8480 256390573 alkb Organic Remediation Other Hydrocarbons NA Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 32807.4365 19819.7583 20053.1127 10460.6815 6089.4356 4333.6513 14118.2896 22400.0807 28166.8512 11246.3974 112842.9642 13595.9877 44218.1288 11254.5230 21502.7830 21502.7830 7361.3108 17819.7098 8659.3023 14305.3167 14461.5195 9398.2673 56493.3880 5080.3084 11176.2640 15481.9138 42797.8941 13532.7632 18851.2737 4544.4661 13107.5720 13787.6710 8762.3446 17746.7838 302412090 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 8681.4992 7417.7720 14965.4321 9143.3397 3722.0208 9537.8771 2876.6057 9029.3783 8594.6603 11075.8445 174227.9573 11483.7841 10037.2427 11244.9142 22788.4185 22788.4185 7787.1436 34250.9456 12022.8657 5547.9595 10296.8790 31873.2296 9941.3999 9692.5706 27267.0845 4680.2909 336245.7670 35288.0308 20717.1884 5720.6060 7890.2550 12276.8865 4901.0769 7658.2780 82618375 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8678.7597 14036.2957 133265.5036 21906.8096 9998.6590 7436.2662 7076.6038 7159.3382 123720.6594 5509.0555 59233.9631 7596.2509 10863.0041 10863.0041 27839.1111 27830.2441 10075.3930 5136.6601 12416.9762 12658.1302 4879.1134 6406.3537 9132.4344 8512.4913 83411.6111 4026.7788 10178.1798 6306.4899 8784.2210 7762.7107 11473.2314 11866.9943 349779258 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 7548.7878 9280.8643 12452.2101 27935.4444 11728.6963 3641.4605 211048.4470 10082.7486 8351.3669 9639.6695 4492.2499 122788.7357 11343.4067 23566.8105 14447.9892 14002.9476 14002.9476 9225.7742 15270.4120 10560.1566 148901.6205 9457.4743 5774.0553 6951.6862 3014.3870 13517.8021 8868.8909 31153.1411 6235.1447 17820.5008 9004.9787 94023.5100 12660.2938 8748.8718 14616.9452 291197210 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7564.2370 10549.9296 7625.1540 4536.9006 5337.5325 4742.0679 4322.0886 5987.1155 9329.3612 245452.4915 27265.6014 7372.0326 16175.2185 5450.6468 5450.6468 5266.4640 17842.2438 6087.2806 44947.1747 9302.6491 14120.0297 6780.0449 9550.2409 11852.2887 4680.1620 22051.0565 5600.4891 10042.1164 4853.5194 5480.9301 8383.7892 2929.6222 5803.1014 171989754 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 5765.9727 11469.2716 7989.6938 15409.0693 10427.8098 3867.6796 3999.1430 3755.8983 63730.5055 5080.5268 6339.3948 12455.6395 4998.1114 4998.1114 3309.4534 8439.6302 9785.9597 5546.4621 9518.4947 5046.8326 4276.9899 3454.9961 8305.5369 5675.8193 13556.1498 6740.1119 7091.4067 3394.7523 4037.5898 4144.1965 2923.0859 5753.0682 149832801 dsra Sulfur sulfite reduction NA Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 20284.9034 11143.9801 13440.5446 1487522.6250 9164.2401 14657.9774 17418.6177 22901.8973 13730.2791 48249.9108 8437.0900 248201.5778 13423.2477 20223.0849 12357.2532 9122.3788 9122.3788 11764.1459 24332.0114 15556.8020 11644.2058 14313.3772 24407.9009 7138.9540 8420.9304 38713.4044 11047.9564 35217.4201 14394.2276 77261.7557 7036.2813 16452.4372 13451.1743 9915.0444 14903.8079 282948453 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 5266.5057 7582.7807 18248.3923 3694.4790 219911.7834 2819.6536 4366.9140 6858.7057 4007.8841 120383.0460 7730.9482 7119.5155 14892.2210 3601.8368 3601.8368 283146.7538 11472.8117 11095.2229 762016.4495 6418.1969 10117.1879 4054.5244 7243.8817 7426.8813 3677.1253 12799.5212 4774.8269 11025.4304 10802.1832 4802.9458 10934.5854 2906.0503 10296.9688 194291386 nirb Nitrogen Assimilatory N reduction NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 6570.2495 14128.5487 5117.2248 6349.0883 7740.9823 77931.5657 6558.4024 4434.8139 6063.4930 6063.4930 8625.8223 5450.0725 7390.7263 3715.7007 10005.7002 5676.4867 5370.1895 3526.9672 3297.9639 407766173 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax hongdengensis A-11-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 4514.4670 15882.3853 4244.6958 5851.3599 4335.9664 6702.6129 5758.5653 116208.4261 5505.2486 6002.8114 6141.1343 3665.4897 3665.4897 25754.7513 6868.0766 7190.5190 5269.3595 13915.5093 4482.6865 5554.8236 3096.3055 18741.2837 5548.1129 10778.5180 2985.8055 5229.7322 5619.7129 5358.1160 7948.8619 169657240 nirs Nitrogen Denitrification NA Thauera sp. 63 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 15023.8721 45012.2281 6996.5813 5658.2975 11337.6059 14602.8204 41917.2789 6446.4436 9702.6254 70668.0184 5490.8373 26230.7320 6889.6141 16909.0610 16909.0610 4746.6791 10213.6314 14658.0192 16850.7337 14297.5722 6249.5866 9096.3953 9935.2779 7614.6796 5934.6220 36229.9989 41216.5746 13990.0806 5704.4476 8579.9345 11381.0120 22109.2820 8245.2777 60476334 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 74459.9213 101403.2948 52601.9108 55526.4624 8562.1637 95055.1908 44418.9482 40228.7234 44263.1698 36968.3889 48338.4242 1421031.0548 59908.5326 43161.4973 51684.1658 62730.1631 62730.1631 30186.8574 109340.9721 52010.1912 76554.3281 67543.9022 185993.7153 28840.8406 30822.2701 41562.9234 41377.5278 135906.0778 74099.4339 111785.2765 27671.4805 65577.2588 58617.1864 25091.7891 57880.5634 33391361 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4935.2684 5778.4685 3461.5711 11973.5514 115115.7041 4829.6884 8654.5296 3395.1631 3395.1631 6243.3709 12136.4520 6714.6639 5390.4115 7506.6080 3159.4650 8104.9144 8152.4930 2986.3301 22216.8201 8558.0853 10086.5291 3686.3616 5327.5479 5422.8984 4597.3266 7094.0590 357079881 xylj Organic Remediation Aromatics BTEX and related aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 412255.2644 15954.5477 58807.1897 524080.4691 32590.1703 110458.4355 47569.6684 173065.8177 103590.2112 196846.7954 140118.8074 94893.9180 1060739.0886 103549.0571 207213.1474 139500.7466 189555.0873 189555.0873 200217.0224 99750.8115 65153.1902 121599.4688 115446.2951 65086.3200 76425.2785 72232.4596 163825.9639 98213.0386 77769.4449 117481.7531 124099.2857 171853.6734 341629.5405 131665.7258 67330.3367 200550.5194 291297053 poba Organic Remediation Aromatics Aromatic carboxylic acid Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 15745.4476 12944.0433 2493.0270 3786.8678 2014.4316 2014.4316 5095.1491 294884049 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto31_4W superkingdom:Bacteria; 7143.9603 5326.6253 11546.0262 5472.2168 4201.0304 13625.7548 3162.8119 5216.3840 2226.4031 131997.4993 4322.0860 6995.5682 1925.4360 1925.4360 4002.2454 10212.5835 4595.6360 4453.5668 8786.8689 6144.3774 2960.0603 2943.7561 7006.4482 3161.5162 32926.2605 4407.0265 6774.7603 2387.6184 5359.4250 5059.0102 3154.8509 5668.6309 343924809 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 9805.436 6175.5128 6791.6989 14619.8609 6679.0139 7801.2887 11066.6625 3271.038 26293.8291 15900.4568 41436.6734 110143.6631 16472.7398 13091.8698 4619.8653 6233.0285 6233.0285 9099.9883 35583.8078 34104.0952 11905.8107 23687.8523 6603.498 14759.9366 7755.7652 13598.2063 9519.8588 22649.8744 10487.9318 15105.686 12082.9483 8200.3799 49664.8676 6018.7106 7446.824 78062032 catechol_b Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5698.3936 10343.1291 2663.5206 2008.6381 11342.9449 291436737 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 5063.2755 10616.2383 3727.7813 5231.142 5618.5679 6707.5715 4422.3509 9256.1945 145779.6928 5168.8406 11978.6633 5386.1736 5729.5055 5729.5055 7287.8915 12568.0135 12692.3183 568828.2065 6212.4033 31862.6936 3325.7449 9788.8992 11358.4105 4064.7397 18119.7733 21614.1536 13407.2218 4472.1981 7052.3746 6147.9811 2716.6749 8061.9348 308179069 catb Organic Remediation Aromatics BTEX and related aromatics Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 54871.277 11980.2711 36904.1601 27215.3119 45229.9487 31664.9898 79543.3837 53749.4299 59947.4518 37295.6553 58047.1402 46289.1441 633937.1823 129269.3755 52313.7169 36259.0289 33520.2606 33520.2606 27405.4181 54820.4004 29369.5042 50992.8219 83049.3135 56704.3238 32189.0511 39912.6151 38828.7614 43779.2387 124593.4544 34529.4465 62483.7873 30739.0044 29652.8687 54231.6197 25429.814 57374.6214 332670817 cda Carbon Cycling Carbon degradation Starch Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 7389.4058 41147.0995 3125.487 5310.6229 7017.7737 5216.3101 8743.6532 7623.8236 3017.014 9587.9175 4304.729 6056.2496 5043.3669 9979.3373 304357069 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 16405.2788 14522.795 6955.9377 9475.1636 214060.648 2792.167 4494.5696 5151.0238 2612.0391 2612.0391 5365.5844 13881.8516 2477.8679 3181.8755 6241.2398 7904.0648 2449.8837 2770.7532 117986822 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 11082.3306 9960.3645 10029.1517 138640.5161 11228.8374 123258.2791 26858.2806 13346.2051 18890.0683 333039.9251 13324.1592 26288.0344 32159.0487 12821.9252 12821.9252 13255.7237 33293.8566 14734.0716 15058.9208 17731.0036 60964.4725 13082.5322 17524.2354 16343.3777 24018.0512 42970.2798 18408.262 24899.6568 9054.5392 46141.4868 75266.2863 10954.9025 23943.5516 388256683 atzb Organic Remediation Herbicides related compound NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 14386.7794 6411.3939 857134.7804 6824.4826 18987.4358 6179.8105 9391.4009 10181.0575 6208.5273 46214.3747 332751.2333 13378.7178 16925.5888 8215.7103 9077.0732 9077.0732 4865.458 17672.1752 12166.1809 113436.8992 13848.3118 9714.8621 3237.7282 9187.6701 13577.8796 7700.5701 23189.8681 12042.6646 9952.4183 4592.0936 6453.9116 7581.4425 4933.3873 11243.4645 157285569 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18701.5516 12389.4381 14519.2508 13641.4018 23178.6351 6635.1021 17963.0669 14400.585 10999.5691 20128.195 21976.3777 8490.4172 455979.1668 26002.7989 20901.0842 16511.151 8621.0606 8621.0606 13542.3252 29349.4365 20443.9746 21795.3326 26676.2834 31277.8576 8854.4675 9390.6732 25947.1394 8695.1147 38934.5982 17833.8487 24294.7502 9870.3373 14738.4885 13453.1323 11024.0669 32853.4269 44829093 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 29818.7094 19195.1257 23600.4051 42128.0855 26456.201 12032.9053 303982.0958 50206.3365 22528.9194 24684.3022 45736.0649 77956.7212 508284.1861 79952.5377 45277.1328 29030.9956 85631.3913 85631.3913 21900.4746 53136.2112 24370.2166 24396.3426 126612.0853 26720.379 15862.4992 18582.8176 33334.2274 32579.5462 99030.9107 42625.8447 79004.2701 34138.0454 28710.73 29492.1322 23286.2785 89082.2927 29349518 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 13271.9197 49854.8961 2407.8771 5788.7903 32600.445 3510.2679 204837.6081 5563.3285 8575.9075 7687.2868 7687.2868 7076.6872 7289.2933 13779.0647 2521479.5333 2754.9651 4003.6624 48584.3814 9980.2732 6943.4147 3313.533 5482.9806 26207.8004 3084.9223 5505.677 380879691 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 9783.658 6086.6045 13515.2102 10741.1074 5958.1194 4041.3396 6810.6158 3544.5738 9908.6865 21652.5831 3794.9186 277076.9686 11515.7989 9392.0314 5787.4153 5446.8628 5446.8628 8726.1104 14845.981 9929.9011 11935.7187 19252.217 14424.5907 8003.004 3639.0688 12406.5932 14340.5 22474.1586 12367.5143 12556.2651 5701.1322 6151.6936 6170.8191 6406.5531 14110.1389 320093823 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 10430.2339 8242.3972 5037.2072 2540.9084 2540.9084 2787.3355 6657.8248 8545.8647 10661.8989 5805.8277 4444.6558 3004.214 11345.9834 4767.8926 7552.5854 3233.7377 6503.9885 81300070 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 59230.1937 21575.1839 7315.2259 16770.7815 102684.0163 11604.1228 29285.8506 61019.6344 18144.4123 17298.7667 39083.6868 70621.1551 334527.0732 53476.9997 55242.0644 133271.5359 81173.0167 81173.0167 79150.436 31399.0184 15220.6964 19000.4874 64253.3916 18284.8417 35852.6189 33713.0345 50852.5307 56988.6534 58941.0758 87533.6436 61668.5995 12003.161 24517.9513 38239.7403 43429.2464 162324.0896 164455244 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 72473.9128 14786.2268 145466.3142 232604.2475 110882.5605 23202.9284 46239.6864 232456.7959 309894.6721 33515.0997 73234.4582 39812.3328 3935876.3252 89979.8898 97335.4415 51086.8581 105536.1034 105536.1034 29154.8174 42967.9536 22056.9687 58157.5488 52186.0041 47950.203 187907.72 31297.8074 44341.5112 23791.47 94759.5911 107180.2219 65623.5933 27874.2154 52284.7323 42874.0066 61721.7107 77118.8377 304404116 cda Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 177701.7125 5395.3896 3677.7266 2141.5292 3838.2493 3599.3696 2616.3487 62760.5381 3556.8441 9752.9749 9648.7282 2910.2194 8573.6387 4100.4733 10991.7122 6373.1693 13892.0496 3466.083 3260.1657 5955.4362 2953.59 14489.871 9147.4824 6469.1906 3285.629 6089.8738 4036.2984 4126.9286 6157.3803 407306104 badh Organic Remediation Aromatics Other aromatics Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 99076.6275 76722.6804 3106.4218 11004.3397 9697.7109 5732.8424 4611.08 4611.08 7610.5355 7284.5443 14820.9584 3547.641 2222.9927 7083.1546 24529.1469 4125.8786 9628.4961 9863.4601 284388634 amyA Carbon Cycling Carbon degradation Starch unidentified 4420.7241 1942.125 2021.9244 79623.7316 12562.6251 16089.6259 2536.9801 6152.69 4550.6532 6168.8757 261189466 p450aro Organic Remediation Aromatics polycyclic aromatics Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8207.1646 5614.2189 3991.3812 5563.5973 8763.8895 4660.0407 209249.7166 6233.2196 6013.3434 5890.0989 2571.2305 2571.2305 4167.9888 12601.914 8946.1514 8768.4963 9803.7236 14927.7608 4616.1206 4137.4876 10366.9511 4737.1131 15596.3665 8458.777 11356.3096 4849.0207 5884.449 5816.1094 4102.3257 14528.9923 302690728 amyA Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 11126.4882 7035.0912 11835.1722 2859.442 2772.9181 2772.9181 9948.2205 386002231 arsc Metal Homeostasis Arsenic Detoxification Methanosaeta harundinacea 6Ac superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 140266.6136 6688.5912 8822.5298 6189.6392 4823.665 12827.39 18346.8922 6586.0995 9493.2475 5219.106 88629.8991 9405.686 8747.5601 25621.0603 17094.4561 17094.4561 24816.5695 20802.0926 13128.8778 19709.949 9363.8468 8926.1217 5918.7246 24983.2107 9653.3983 4299.6047 17650.9071 25547.2402 10938.0805 6035.9097 8685.1321 12189.0403 4358.3574 11070.5583 392949988 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 8715.1951 8028.6158 9179.4238 5143.3912 5559.0334 6380.9612 5922.9463 7440.7219 9790.8516 5322.5566 417790.0915 7981.6361 8516.4767 11784.2768 3409.4288 3409.4288 4061.4429 12184.435 6515.9992 9614.3532 11780.8791 9670.1458 5076.9638 4548.2544 9104.8243 4272.111 24318.9229 14218.5769 11441.5938 4258.2486 6473.7482 9004.2246 6214.398 13458.6939 386848613 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 10109.0382 6899.9983 10919.3258 7086.5774 4029.3695 3982.7052 3829.7667 3720.4115 6348.8659 13850.9074 92585.6494 9939.2125 16534.3784 12231.7244 8995.2284 8995.2284 3940.7963 15569.4923 17274.6956 8208.2919 14313.7958 7210.9166 6768.0085 15789.5717 8171.3613 4957.4513 60540.0363 17283.9455 11407.0409 5627.1694 8808.1078 5893.3163 6159.8584 19069.5217 161392212 pcag Organic Remediation Aromatics Other aromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 14455.2267 14881.9122 18771.0546 78732.7122 8534.2771 3397.9466 6195.9777 11746.7706 17297.1627 6792.5046 18893.8732 106147.3495 7114.8465 4128.0898 38196.2792 24225.3324 24225.3324 3795.2653 16365.0748 6029.864 62262.2396 10208.6001 12102.333 20664.9101 18695.9364 13635.1261 5866.8639 6330.9074 4104.9144 16047.7932 10876.466 5558.51 221533585 mer Metal Homeostasis Mercury Detoxification Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 8078.6343 6396.207 11331.2083 7970.4632 9164.9385 5635.7856 4210.0213 10131.4511 17282.5906 4445.4456 149689.9299 8291.1395 10853.3629 3725.297 3725.297 7508.8179 16551.3227 9129.2094 7643.1104 7790.2129 24447.1491 4571.9079 4768.3374 12526.4563 5833.3201 20167.702 9517.6144 12673.496 7229.8304 7133.117 6900.9557 6464.2587 11607.425 90578535 chitinase Carbon Cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 5154.5272 9224.883 7570.2521 6223.2926 3273.2835 7738.5853 6604.5352 2917.3029 115925.2077 6975.3335 5840.8175 6280.1814 3164.7232 3164.7232 4614.6501 11645.0653 7762.0094 8739.0114 8670.0504 13334.0511 4327.4204 4007.7584 8803.4988 4545.5914 12481.1712 4538.3264 8255.2556 3740.2021 5057.9271 6269.4029 3798.6553 14156.379 171685436 phenol_oxidase Carbon Cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 52286.7414 11139.4869 4804.2129 18889.3999 9811.3319 8386.286 13013.9027 12934.3185 13945.4849 6428.6966 188605.9858 14314.7191 11606.1155 10709.0834 5654.2462 5654.2462 6601.6762 13058.6094 10372.8403 41201.6063 31877.99 12903.4292 6143.4487 6646.9377 14501.3859 6623.3699 22468.6006 12874.8054 21739.4737 7916.0469 8229.259 8343.3695 7006.1881 14592.9973 333919665 arsc Metal Homeostasis Arsenic Detoxification Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 5377.4628 20672.2821 4155.5029 5394.488 91615.5029 4686.9011 5911.2629 6315.3768 13425.3499 13425.3499 6170.9948 5188.1596 3482.5017 5842.6763 2552.029 6460.133 112774547 xylg Organic Remediation Aromatics Aromatic carboxylic acid Delftia sp. AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 96365.0548 12347.2393 12288.1983 28613.4402 6712.6767 11100.762 26944.6614 3271.1086 11437.9167 21786.9116 14722.0814 235966.1289 12941.6269 14079.0828 14575.5408 14830.3163 14830.3163 12419.2521 22318.6099 12610.7495 19929.1476 25674.3322 16217.0235 8289.6494 11410.9933 29825.3672 8135.485 29119.1437 18659.9585 24898.4484 5320.7081 16263.2717 18413.6855 10343.5549 17274.5652 264679290 catechol_b Organic Remediation Aromatics Other aromatics Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8246.928 4481.5704 2389.1424 3069.4041 4935.8216 4679.8118 52132.2169 4555.0186 6275.3035 4734.1117 3413.3579 3413.3579 4408.5873 2779.2205 6695.6414 7163.9606 10755.9184 2457.0993 3701.8871 3430.995 2577.2385 34660.7868 83955301 pcag Organic Remediation Aromatics Other aromatics Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 18422.9973 14859.4166 12416.4586 11261.4786 13066.2753 16434.9567 12287.4962 8156.6792 12413.2218 14879.7319 7802.3607 262040.1472 18383.999 25549.5653 8358.052 9550.1345 9550.1345 12262.2852 24806.4978 18027.1529 18377.1816 20952.0993 30573.979 9305.9082 9908.8658 24731.6106 10520.6898 28496.1319 21043.679 23000.1016 10673.3913 10485.3762 10867.2169 11065.5321 24680.6621 89474382 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 34550.2699 9717.0723 19573.8951 45575.5995 8247.7223 13107.9266 23728.5986 20237.502 22156.8247 20917.547 19601.2862 720453.3725 17817.0866 24673.0807 39503.2177 29621.0457 29621.0457 14631.5262 24845.3023 18091.6104 135573.9774 41733.462 23642.4928 19200.0852 19324.4073 36495.6176 11136.1085 33981.7276 37159.1076 26478.7169 15269.547 18460.1383 21646.9486 18965.1037 20160.5386 4512252 mnp Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6377.9086 21394.8875 6558.1831 16753.5893 56442.6664 3093.3826 7930.2626 5067.768 6048.9845 9470.1056 27871.0014 6818.1501 6818.1501 56406.0338 11527.0718 40372.4196 4612.9372 15136.0814 39640.0171 12585.7805 10261.7527 4492.5756 19023.4785 15603.4519 11988.7139 3097.4639 9393.2204 27055.2128 12335.4446 9642.5875 94471355 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12133.5781 4722735.9329 12311.5581 9323.8296 14447.0277 5541.936 8673.6401 6173.5654 31246.9247 12607.5072 17392.9391 12642.7708 324803.4944 24859.7284 25153.4794 17882.308 10884.3181 10884.3181 12834.2776 19307.0347 15631.5053 20588.2698 12592.1214 20789.8437 8926.6636 9496.463 17732.7337 9185.5823 56942.1599 25100.6796 25573.0134 18277.6886 12583.8934 17485.7804 10316.1533 23236.6655 118424358 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16971.6009 8784.3249 287337.0363 7432.3249 8713.9759 8083.8628 3884.298 10275.3931 9711.4554 6738.2291 251812.0142 13581.8834 15389.807 13016.6569 5432.4561 5432.4561 7372.7941 19575.8898 14460.0252 15238.8179 11530.8334 25992.4215 6583.4119 10341.9192 22385.3917 6497.4798 59730.7442 24483.9037 32333.5033 7094.3813 7799.7081 9212.0814 7343.8666 28349.227 89091895 mer Metal Homeostasis Mercury Detoxification Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 7927.4108 7376.2457 2930.8354 4283.115 5572.1807 10680.2759 5957.1089 5435.9595 4640.2851 4640.2851 4019.4678 9262.6424 6857.3445 8892.6762 9003.8557 2308.4562 3336.329 8461.7067 8588.7932 88031.3519 9782.0183 8781.3797 3168.6335 7090.7834 4247.6906 4989.9826 323364952 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 20070.2579 14014.4598 7053.0313 8958.411 9344.2947 6700.5973 5518.6264 5994.0731 38477.9445 33779.6611 235003.8148 8331.0214 16367.6383 8160.4804 33532.3636 33532.3636 5913.9931 8860.3935 4628.4651 6240.5438 71371.9004 7507.3412 14715.9488 108709.5605 6015.0295 41577.6746 11797.4387 45451.872 31765.7546 9829.5579 38582.1178 3665.5337 9945.5085 291345146 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 201855.883 12208.0459 202547.8408 72036.0873 581225.2379 42804.7514 64125.7128 306226.2118 93258.3731 217409.2328 353838.7222 157331.1442 2506478.0655 177937.2984 251195.3148 390526.1564 295565.702 295565.702 156802.6573 215344.5649 103466.3688 186304.9791 283487.8273 98576.2599 166184.5594 123383.878 130798.3045 133955.8472 397000.3641 191969.4306 249536.2124 98413.1486 163539.0831 138471.4267 100829.2755 235567.781 308177085 amyA Carbon Cycling Carbon degradation Starch Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 45250.4857 13830.7738 4315.6228 8856.8676 5443.1434 12760.8647 52083.8082 17157.3643 31474.2313 14359.3637 14947.8178 628872.048 61727.5898 17853.5141 21121.5308 8976.587 60685.8344 23333.2236 38553.3681 34964.6627 23980.9903 13867.054 18806.8398 24274.5602 22844.688 41560.0949 104061.8926 59368.3678 19422.1388 37836.5514 11947.1141 30670.1118 388537696 SoxB Sulfur Sulfur Oxidation NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 9459.3708 6719.5106 5255.011 5510.1047 4205.5645 6839.6818 9134.9326 3913.1941 221852.39 11436.1203 11382.4942 4349.7011 4490.2014 4490.2014 5585.5021 11228.7226 7249.538 6979.9172 12518.6214 6580.1531 3214.8818 4502.3841 14045.0627 5194.4933 26086.8541 10573.1651 11534.7948 5693.2892 10059.0199 7471.5927 5561.6234 11298.6535 84664691 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 4134.1189 9254.0141 50709.6858 2999.2259 3504.8324 4449.9588 2475.1844 61841.4172 60614.6107 5577.0002 7345.3527 7345.3527 3447.6898 7000.413 7636.5539 3976.6571 5005.1597 4413.3251 2421.4286 3268.285 9439.9749 7970.9637 13293.6719 4937.7419 8182.585 2831.0458 13055.5173 8582.4126 3617.0441 378950571 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 10048.6294 12463.1657 5564.2637 10528.4448 13393.9429 6870.9226 6364.1991 4435.583 11511.5571 17151.4571 9100.2473 229750.9904 7901.4186 9706.666 6046.5692 15487.8803 15487.8803 5297.5384 19147.2995 7698.904 13298.9136 174072.9411 8707.8685 4312.3948 8958.9673 10642.2104 4325.3496 19160.0014 12132.0659 18216.6493 4076.1875 9676.7011 9727.7774 6590.0424 260396.5431 342859675 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 49732.2619 20446.3842 19819.2555 64342.7174 354770.7414 9535.0673 16303.7893 13803.938 74725.3763 21217.3952 60499.8519 249489.9595 71245.7089 22030.2804 28186.6494 33668.068 33668.068 156025.8497 36030.8992 19526.0599 31879.3188 49071.9086 24724.1382 16511.8869 22268.3436 19700.8927 19482.7725 107558.7901 40259.7878 63019.7649 19089.4284 24528.3975 90441.6141 21001.9285 53826.9127 402251337 catechol_b Organic Remediation Aromatics Other aromatics Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 3839.0366 5867.5982 15836.094 7790.6748 4702.9167 4597.434 8365.2472 6006.3832 99317.8872 5310.4579 14963.4987 10078.0061 7679.2828 7679.2828 6289.5228 38913.9291 7785.8991 3816.207 4960.6932 10213.9214 2906.4316 7164.8272 25572.363 8871.051 19183.5263 14810.9226 11860.68 6128.4476 14323.621 10052.6214 4406.4587 6829.5759 16081843 gdh Nitrogen Ammonification NA Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 34582.4423 253780.4063 10049.3931 18125.934 28874.2744 19774.6489 47243.9669 39573.0187 18106.4109 34022.6734 346777.5846 29319.2322 27795.1623 48497.5279 28948.6274 28948.6274 22899.5523 75468.0135 19572.3099 47317.583 64153.2111 39703.7686 31310.8445 28265.6013 28593.0509 21366.8334 70365.5282 60489.9674 52369.2584 20029.514 39432.9232 29727.4221 20721.5793 133654.6431 302406855 aln Organic Remediation Others NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 6937.97565 16580.62495 5009.80205 4544.56555 3728.19995 4961.87245 7751.0489 2481.4968 124460.6467 14596.31735 6213.8234 2761.60495 2761.60495 3438.8575 8904.5086 6758.9929 10479.82445 7589.8735 7954.06226667 4475.8129 3426.73035 7149.72215 3698.7919 16308.3883 7359.5549 8845.03275 4814.92455 4748.23915 4747.6259 4291.5785 11173.7942 375081081 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 62630.2646 2436860.4299 10305.539 1667415.3245 14716.775 41849.3691 17285.7097 452755.7957 10630.8307 3311.6297 10609.8213 21415.841 21415.841 184905.0433 225061.193 11799.266 4761.2504 13347.5752 5685.7148 9606.7088 16844.5293 23138.6952 54602.0181 101065.9908 83575.4721 64951.7905 54997.6492 51201.7391 57698.3162 5126.3994 91684750 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 231551.1211 539965.4916 40346.8664 29041.0798 33405.3612 70897.2114 390606.2595 232917.8251 39779.5351 66823.6825 77918.1542 759885.5252 56892.7229 100690.6072 101911.8944 119932.6898 119932.6898 69737.1583 90182.0493 49572.5667 51576.9353 216172.1594 65600.5989 51025.6959 125456.1478 90355.5472 121366.7194 151552.7679 52948.9287 113768.2414 41069.2519 61533.5113 63676.0167 49836.9224 103893.7179 187918734 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 216089.9961 27650.6996 18354.3588 293996.7047 33162.7834 11890.6034 235744.2251 41505.2893 19001.685 131503.3054 54864.765 36365.0615 7047349.9382 84687.4026 45951.6086 55006.6765 39699.8594 39699.8594 26061.8111 63311.1348 42274.12 59777.1007 62926.5195 63527.6702 45994.3764 53482.7516 47523.1868 40771.5246 136638.3951 54586.9707 73479.9215 39646.7337 33508.4354 41607.7143 25397.157 56851.3215 17428457 pcag Organic Remediation Aromatics Other aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 83725.9597 105449.2084 680837.3229 308386.7471 46389.1491 48707.4743 100991.5892 52633.8031 76105.5296 124142.2357 71480.1087 1690547.8769 47290.7459 61404.1317 41102.3349 83237.2385 83237.2385 21633.3434 83596.5453 40389.2958 64015.472 102667.2485 34007.2867 84299.4637 59260.2207 47960.0378 94054.0555 194474.5826 82177.9709 104075.1545 48022.5436 75962.8502 70707.6204 57064.3961 144517.3454 154000099 nifh Nitrogen Nitrogen fixation NA Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 7316.0589 6615.5132 10460.943 17507.4373 2320.0397 2688.9964 4934.2448 3883.1145 118891.5331 6716.5163 6925.9532 9423.3021 4405.0371 4405.0371 25944.7423 3655.6345 9683.288 4096.1703 2565.7885 3670.6137 7383.9838 5406.0777 7704.0885 3471.2211 3182.1689 3177.8422 2836.4812 301062270 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 22264.0444 11571.9892 139147.8076 5250.7366 30244.5002 9282.7313 6614.0326 129881.8037 7820.7356 10093.9213 10091.8474 6524.0705 6524.0705 8198.0111 15149.4207 57278.3033 6887.3404 45050.9804 45718.6344 8704.839 12150.5994 9361.5901 24627.5215 187711.529 8419.0309 5251.7524 24292.8441 8548.7662 4927.6587 42311.2088 220936205 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 11510.8323 4848.6981 8193.3909 4233.7155 3308.1286 73313.4747 3702.2052 6078.378 4938.3308 5199.8386 8886.5693 7753.0267 5702.8692 2737.5755 14038.3825 3392.877 2096.9959 4436.4951 5932.4137 4302.9085 125714889 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 4584.1911 15899.098 2513.672 4354.1585 5870.0462 17214.8151 91657.2431 5190.67 8287.0657 8533.1593 4679.1818 5235.2058 2830.9915 4268.4785 7545.5571 4195.4189 10292.6649 5319.2923 2233.6734 3533.6465 4524.7078 3690.5835 7384.8912 381386205 cysI Sulfur Other NA Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 4204.2496 331992.0231 6910.2559 7610.3765 2705.6629 5698.0619 4141.2737 6528.1188 4567.1059 302524326 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3924.4544 8293.3289 6696.1587 10584.7812 15350.6873 6022.1226 2459.0842 3622.9716 3929.0217 3892.317 4204.8074 151502.5773 7396.0387 7811.6243 10411.7825 9602.0637 9602.0637 4731.1614 7039.1235 5728.9544 10464.6877 5330.3629 4621.703 3144.7562 4384.1422 10430.7417 2509.2396 8868.0885 7458.4374 9485.6367 3057.3374 4388.4367 4273.462 2289.3722 15538.9557 375301013 amyA Carbon Cycling Carbon degradation Starch Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 4227.7066 8627.5752 7161.7461 3173.5751 3279.0892 4542.5509 10641.346 2661.2845 73399.6845 4801.1075 38013.6704 2575.6321 2575.6321 2691.2885 8361.8101 4056.308 4129.3314 6213.7684 2443.0501 6578.2009 6061.4879 8701.4943 3473.8747 6434.1455 3413.0202 2537.3285 3698.8621 2894.168 5314.1803 87281388 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6478.1575 7032.7439 5542.2279 7108.0578 2579.7339 2892.3467 4214.8728 4827.1506 3697.6113 102541.4039 4533.2436 5506.3949 6290.6015 5253.2768 5253.2768 2529.8162 8816.2307 12148.6839 4111.7469 6233.1895 15957.0816 6462.5353 5253.198 10019.2096 4065.2793 6185.8156 2596.4332 2995.7583 3066.2053 4231.8833 229589033 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 49155.2278 15716.3223 25918.3873 33229.2155 40247.8009 8389.9985 82631.683 146374.4506 40568.0177 123665.6317 36157.2444 30344.7702 789803.3054 38023.8735 39436.6123 60892.6225 30552.6192 30552.6192 24522.7115 49252.4864 260978.051 36006.1668 57179.9355 53347.7861 93586.9255 26091.1716 66158.9045 26928.0185 104561.7948 31098.9619 48781.9969 20894.8494 26362.6223 29603.445 92909.3171 44022.0899 183177725 linb Organic Remediation Pesticides related compound NA Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 5806.4485 7263.9364 7890.7717 3853.6079 3453.0818 8432.6809 7121.4005 3331.8391 115353.0359 5483.3391 4878.039 2208.2397 2208.2397 3501.7055 9350.7453 6011.9096 5857.7715 7794.7622 4470.5542 3885.8647 9760.6982 3178.8147 4676.9421 6935.9116 2507.5414 4003.4311 5076.7569 2569.0078 6497.8096 93354878 PRI Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 58587.9604 19328.2127 108672.7128 99004.2284 36807.2861 14497.6541 45651.6999 53376.0428 47356.9626 44040.6279 62392.0652 42195.2869 417712.8687 46505.2951 54737.5891 43291.0537 35032.7295 35032.7295 128002.3794 54413.733 24740.7462 383529.5402 82262.7789 56604.0726 45314.3749 57115.5061 53127.3374 47362.3605 161280.7498 40539.7941 106035.3154 80069.998 80468.1136 28702.3839 56097.9055 757790.9575 84515566 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7180.6803 7542.5732 21849.8505 2826.0974 12410.5006 21039.3988 5005.6192 2638.5312 90467.3948 9441.1764 16055.7709 3998.6155 4183.5714 4183.5714 3244.9193 7496.7609 7203.8709 6685.9809 16134.0819 3999.9719 2689.8364 5408.9933 2922.7004 11141.255 7579.1528 8293.3957 2533.0004 3393.6591 3531.7947 4833.5429 5828.859 74318503 dsra Sulfur sulfite reduction NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 10372.868 12945.0688 14100.2468 8906.1403 11191.8737 19765.3537 4498.1997 10159.9244 40576.426 16797.7114 274919.9492 14953.4589 12463.2521 21728.1181 6094.438 6094.438 19318.4172 28686.9241 13268.8779 12407.9734 17450.7642 45843.301 6385.3175 14938.5039 18082.1641 9336.4576 25844.4676 12689.3742 20412.7719 10580.2737 17759.3385 10335.3028 16776.8138 16948.0428 29293410 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25759.9256 11460.5368 17903.7962 18132.3504 24529.9218 11406.2307 9856.9243 13895.0716 20442.0832 21209.7418 15067.8661 532942.278 25848.577 17755.2791 16754.4037 20800.0899 20800.0899 10557.7195 29141.0784 15273.0983 33924.0869 29435.3247 31158.0108 11669.8557 9582.3594 22261.2075 11963.7113 39326.2434 15547.2774 23899.5942 9912.3472 13211.1998 18691.9868 9672.1293 25799.0204 340545046 one_ring_23diox Organic Remediation Aromatics Other aromatics Janibacter sp. TYM3221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 17331.3069 350282.8895 18827.2878 49193.5148 14204.8208 6759.1538 16893.5421 89494.4427 11255.7463 17816.1045 16748.1984 325036.5341 46067.762 25097.7683 18634.6967 13346.8102 13346.8102 9386.7232 30015.9862 23438.7364 11384.726 9695.9451 11286.413 5345.7895 10376.4594 48855.2017 9443.9895 42772.7463 611137.6248 37385.6309 10591.2353 16376.8435 14996.8183 59683.7717 15248.4873 345638050 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 47444.1086 25339.8105 40718.6521 28093.1688 29099.1892 20632.7616 137584.2774 22637.5898 29872.9618 131116.092 33694.3281 617555.454 49834.4031 52346.3315 74674.5277 27804.4485 27804.4485 21382.9252 63341.4391 34605.9289 38423.2263 65680.7685 60162.7527 19218.5134 78940.9889 66773.6553 23648.4492 39765.2264 53031.4159 79279.2444 16535.6052 27089.2524 58590.3865 29967.3847 83643.3354 237879886 pme Carbon Cycling Carbon degradation Pectin Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 6703.89 8071.5559 28823.4993 7144.9899 6335.825 4167.1441 8091.7245 6986.3713 37254.5558 177167.1249 31923.0524 5938.515 19764.259 19764.259 10535.6682 11455.8677 7710.4912 12627.0032 18718.3695 5429.1045 8343.7216 3672.4096 9112.7831 7060.1615 16883.5158 6176.9033 5910.3946 9723.0218 12870.3614 6582.6214 28103.9975 334901242 amyA Carbon Cycling Carbon degradation Starch Pyrococcus yayanosii CH1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus yayanosii; 37053.9635 17851.078 25454.2202 57833.8897 133593.3124 29551.4799 64919.352 101349.4958 19907.8081 34415.8983 39139.2599 23425.9156 863111.6848 48588.4786 49490.933 68713.4908 43947.6591 43947.6591 30134.1275 54450.4211 48684.5021 38791.0244 35108.9893 86353.9342 27109.6077 27461.9017 86440.9441 18634.8602 84850.8017 83005.7025 68466.1263 167965.7128 30522.8368 29677.9772 25720.8039 98675.8351 115421694 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 15690.3271 5221.3934 4629.9699 2793.8333 10111.5623 5610.0643 10051.6808 10479.3874 8722.906 205582.18 8776.7949 7322.9228 5964.3005 2526.122 2526.122 3712.5768 11688.5424 5242.3194 6849.1541 16825.0119 16942.5654 8791.864 13907.3856 16914.4778 35086.6594 25966.7975 9789.1012 31253.7459 5609.4288 9015.3339 9620.2634 7016.4285 407305380 linb Organic Remediation Pesticides related compound NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 27486.9951 12413.6944 5672.908 7194.8303 5645.596 3166.7118 3166.7118 4698.4289 8132.527 6794.1548 5482.0406 19915.6588 6272.0749 4219.9463 11195.5686 3089609 pula Carbon Cycling Carbon degradation Starch Thermus sp. IM6501 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 4993.4992 10428.8055 7752.7703 22582.889 19963.7956 2249.3583 4160.8121 6071.1424 2766.8217 4591.8926 5784.3796 2415.7951 2415.7951 4859.6099 8635.1737 7127.8764 5213.535 6746.3055 2236.7425 2618.5679 7604.5386 3312.5122 16498.6094 3576.2561 8454.7305 4442.1255 4469.9536 3156.0084 2001.0576 8912.5828 172056851 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 15345.4296 14401.12 13044.1392 23919.6187 8884.9812 13515.252 270245.826 8167.7071 16187.1899 14191.3794 6056.2314 306634.9376 17220.9283 15986.9302 8648.4223 6425.5496 6425.5496 8311.9367 19561.437 20409.3271 20428.3879 1379742.1639 20583.6822 8386.7804 9723.5585 15775.6737 8581.9927 33710.2547 15583.1181 21424.6235 8381.0029 9652.4171 12505.4281 7786.3 23605.2084 326949267 tfdb Organic Remediation Aromatics Chlorinated aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 6399.0018 16796.9818 13443.8858 8479.5089 11702.1813 9741.0968 138052.0731 3909.0576 7208.2684 15301.3592 16016.1345 10943.728 114835.5238 5799.711 9577.5615 16717.1763 11958.303 11958.303 9004.5022 5165.5254 50492.9984 7469.7754 4631.9089 4394.5199 5993.808 13466.8327 5250.0113 20339.891 28275.9287 7517.3293 6152.077 81389.7693 10100.9665 3399.1469 5436.6237 392120765 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus 6G-0125-S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 15009.1546 151962.3621 19650.3366 76314.4449 15049.385 9078.1482 6680.5707 15437.8212 29243.448 19347.8584 18746.2934 7958.6437 276799.0807 16167.9545 24504.2617 19360.054 21710.5648 21710.5648 9399.7822 21880.1963 16485.8629 21144.1183 766392.3077 11839.1588 28395.6621 10726.1719 30396.309 7220.989 60223.2614 30674.5647 67304.0049 16837.8387 9216.0124 16790.4269 8235.7101 20262.0741 251846150 cda Carbon Cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 11894.1425 4925.7178 5446.2327 3971.4743 3694.4326 5327.2497 12863.3412 3470.1834 136470.858 7839.7948 5857.4568 4125.2705 2076.3461 2076.3461 4647.2823 17447.0621 10538.051 8507.2151 9968.9268 10006.1801 3725.3016 5014.8498 11142.2724 4894.5319 18483.8125 9055.284 8304.4209 5254.3695 6722.172 23464.384 9511.4212 6630.0454 85710414 linc Organic Remediation Pesticides related compound NA Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 186370.9135 153822.8948 23989.6463 28776.1771 13798.1554 61524.5786 30839.1332 53097.0502 49558.0753 116834.176 207276.2781 239725.9415 65129.0382 30787.1614 56044.9117 35378.1567 35378.1567 22743.573 71427.6239 21383.7927 22171.4191 79435.0212 34401.4523 115443.3091 38666.3246 64581.2108 83116.7255 114795.822 140525.9315 40923.6524 24756.1152 38442.5563 49536.1681 76131.1572 74504.4527 298710460 mg_chelatase Secondary metabolism Pigments Chlorophyll Ectocarpus siliculosus superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 6592.7929 8839.3322 10623.524 2290.5521 2906.0373 9807.1748 3143.4446 7392.593 5441.4759 6773.1809 5433.3302 8496.7822 12898.2546 3626.4015 7784.1876 9117.294 7033.9378 2985.1245 9882.5203 6360.5153 1815.0795 3402.8742 7616.6032 16356.1977 49530591 bend Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5201.9834 6528.3128 7732.3382 7860.3655 3077.4054 5251.5091 7534.5372 6828.5804 111710.5356 6310.8312 5996.4912 4589.8995 4589.8995 5571.8216 12228.7493 6694.0949 8720.1777 8905.7863 8173.042 5638.0892 4298.2588 7920.0445 3220.4192 16898.3837 7037.4134 9220.5916 5313.9188 6034.6843 4708.4337 3355.5892 10603.0171 56477216 badh Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 6376.2093 43015.6659 6369.8389 2146.2845 9059.7331 4820.4446 7569.5688 15684.7787 225970.1179 8242.9592 16806.316 13347.2161 7740.8691 7740.8691 3861.442 8172.6584 21218.9328 29766.2562 6728.7528 17089.125 15673.1694 20115.61 5951.0719 10826.9299 7602.047 3745.9519 10707.0894 385679657 ppx Phosphorus Polyphosphate degradation NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 72298.2155 20397.85 35269.3799 50358.6395 79902.6763 13897.5987 37920.9555 41398.376 24561.9715 36922.6898 53529.1963 47373.5525 939869.7301 56652.6671 65767.1024 64341.3327 27233.0925 27233.0925 33317.8562 60643.043 35168.3126 39766.0878 82598.741 75171.8157 27421.6687 52177.2314 59972.1947 23169.2973 82324.0436 51938.1274 61184.9592 137843.0184 28210.7129 34253.3586 23445.0259 55467.0122 343926310 cutinase Carbon Cycling Carbon degradation Cutin Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 5804.1006 14887.9786 4804.4937 19966.0248 43302.5579 1926.7775 5168.9308 3359.201 4015.8768 84958.4944 7581.2506 4736.9472 6803.1736 6803.1736 4278.9356 9651.7443 3932.6666 19359.8165 10400.6034 13628.8616 8056.0411 11443.2537 16492.2264 30592.7751 13436.2399 29286.7609 12289.5305 3604.4349 5284.1784 9911.6401 44089.6747 8991.323 33590262 xylanase Carbon Cycling Carbon degradation Hemicellulose Scytalidium acidophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;genus:Scytalidium; 16234.8186 17972.7503 19027.2794 9287.5173 35541.5016 11936.7877 8773.662 13149.1197 17670.4491 9767.7224 18653.1362 12560.7 349206.1218 19309.0657 16739.0768 13585.2778 10087.1475 10087.1475 11014.4816 25439.5915 15621.0644 27568.4189 14043.3746 85262.2811 6522.2566 10274.6021 21176.7816 6858.5577 31853.3466 29302.8166 20920.7427 8672.4474 17076.7469 10710.0236 7085.7681 15679.3933 116612264 terc Metal Homeostasis Tellurium Detoxification Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8944.4461 6702.8529 4725.597 11640.7731 6608.1272 5045.9815 4077.1615 10231.1849 9703.0371 4693.5429 226403.1926 16152.0391 12066.7197 8921.3986 3498.7801 3498.7801 9944.9692 16786.373 13552.7164 10722.3788 9337.6093 9864.0322 7920.4373 8009.9623 17719.6066 8850.6655 66845.0425 15935.4385 17023.4113 6169.5891 7937.9043 11085.6792 6052.2571 16704.5622 377575732 narg Nitrogen Denitrification NA Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 40104.9012 2402.1583 3050.2993 2911.3225 4314.7296 4613.2702 7201.4658 2404.764 2404.764 3852.1853 10469.5136 4274.5714 5335.2043 5050.1798 5444.5869 3419.7441 3502.8893 5074.6027 4932.6089 8163.7315 5950.4233 2356.4114 5920.8127 5213.0388 7777.5767 10008.706 126716453 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 15422.1261 27260.8884 9446.4725 15896.8293 14445.106 8089.3459 16011.3877 13895.36 8111.9606 14791.2641 21574.4452 7319.1785 202111.1308 16201.3088 12558.6525 12542.6179 13706.0668 13706.0668 11444.3461 27866.6747 17002.4487 22020.6034 31831.1818 24222.1058 9641.4422 9006.7457 18740.3467 9698.3778 24787.9296 12376.5458 18556.2647 10537.8272 11772.1136 12642.6589 8381.6785 20751.3598 388567244 linb Organic Remediation Pesticides related compound NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 149601.1868 61864.9121 121535.5868 167046.8567 212057.884 56912.0413 71693.3872 87926.0368 148420.7398 68953.4555 155311.5822 159495.4153 1496202.4926 251141.9183 94017.3612 161507.2105 171775.0743 171775.0743 85749.4755 139411.2528 114184.2678 222469.8605 246017.3825 145043.6591 96212.1989 75531.1013 98734.3043 124975.426 210390.8194 206884.4967 134691.3877 51401.0613 141296.4787 166313.1931 83652.8338 221511.1472 325105280 xylanase Carbon Cycling Carbon degradation Hemicellulose Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 22778.9517 6800.6349 354585207 heparinase Carbon Cycling Carbon degradation Heparin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 5008.6399 2019.6352 2478.5892 3889.0566 4332.3457 69003.5451 5030.987 4528.4995 3092.9123 3092.9123 4097.9351 5403.9737 7411.2942 8169.073 6339.8951 8194.7156 4684.8659 14770.0793 7808.0931 6702.977 4221.7317 4456.0204 4516.6767 381200695 ppx Phosphorus Polyphosphate degradation NA Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 249610.6846 11699.4272 25080.6119 32693.0094 9973.6004 26032.8186 27175.9671 34841.887 37000.9859 24169.875 47650.5063 257762.0922 33862.3327 32557.3367 45474.5985 40973.8765 40973.8765 24516.9273 75188.8122 25078.2715 17884.588 89968.9666 23973.8231 18367.7196 28350.3228 115536.597 33603.5366 66800.8788 45602.0687 106163.8748 40778.2691 28766.272 42534.7789 61095.4573 41976.5449 388567101 pobmo Organic Remediation Aromatics Aromatic carboxylic acid Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 6195.0108 6939.611 6160.0831 14179.3756 65158.7123 9135.5591 8533.2212 12101.757 6627.5131 10984.7882 4264.0174 113494.9921 9325.4662 7295.8789 14405.6224 14177.4448 14177.4448 4326.9047 18833.7036 10218.9441 6404.6567 14071.7259 4942.0867 5788.705 8064.1287 13157.1737 3928.6179 17294.233 12128.068 6675.1364 6520.2276 21305.474 13022.3531 9183.1717 304391669 TIM Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 62971.8502 12921.7633 733269.596 11840.5144 41455.1011 10418.066 20424.8348 32627.8078 13814.072 17609.6267 32219.1954 19318.1977 468193.8606 28572.4498 52085.2377 100301.0178 21304.5574 21304.5574 24894.4205 36675.9977 27156.2271 26001.8525 40400.2617 32421.3657 12637.7166 12312.9559 24564.559 13163.1303 32366.3582 18215.3049 26217.5235 11932.774 24054.2267 21485.2045 10946.3218 19726.0577 325261346 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 17196.2947 13365.2083 18544.5064 22918.7057 9962.2148 10594.6359 99743.3013 8690.9918 15154.5557 18872.614 8342.6049 374803.0551 17997.1639 12672.9641 12432.2872 6591.9013 6591.9013 112717.712 28829.7476 16243.973 380521.7902 15694.0426 28404.0421 10186.5535 7401.11 20449.3928 7673.9335 35476.1523 13745.2054 19305.3671 8321.6638 12043.7874 9374.5461 8283.2015 31266.3792 119469265 amyA Carbon Cycling Carbon degradation Starch Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 10822.453 17099.1974 15309.7591 159908.3799 5665.8311 9117.324 10815.6097 37153.7204 13892.5672 11533.682 8243.1652 302724.9124 14378.4938 12057.3947 12408.4242 9962.6258 9962.6258 12790.9745 26993.4482 14309.4076 20948.0618 29445.1864 16513.7366 12404.5736 8100.3917 39079.9025 12066.0024 73018.8033 12336.2778 19960.5222 10129.3546 9106.8427 20012.4362 7611.736 18367.2627 260623477 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 25537.49915 10688.62 37410.7554 19780.9756 9265.8223 18906.1091 25247.9563 9277.22275 22349.3738 31637.1332 27541.3015 379843.206 35093.2959 36461.5963 42543.4727 29236.1294 29236.1294 192156.4951 38242.80125 29352.77795 359121.83535 48476.8928 23731.10535 19657.0913 26886.7489 50879.88015 91064.6569 63917.3301 29045.7998 90160.91125 18804.9999 133352.43265 30705.64735 16804.9458 38828.51785 343928057 cysJ Sulfur Reduction NA Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 5768.0776 22825.2355 24992.2641 2831.1771 4908.0242 66254.444 3699.9073 4068.4419 12424.655 4473.618 4473.618 2787.3389 5673.9024 3073.6381 3166.6892 8699.9522 2796.4175 9147.1518 9099.7327 6619.493 3624.2655 11035.6427 2628.1961 145304829 linb Organic Remediation Pesticides related compound NA Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 8533.8345 27445.0299 16294.2648 9593.8035 5969.4586 7980.5076 19324.9737 6852.1865 6306.6563 107888.9888 4837.8187 9134.7369 15021.8934 5116.9587 5116.9587 7932.7603 8686.3607 9601.7746 10886.3992 5382.8368 11334.4488 4478.0541 18378.7057 13043.9038 17515.7234 3352.1148 4538.3951 3444.0074 5252.4904 302863179 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 91461.1931 13997.8337 44891.8412 42134.6047 55287.4148 15021.0323 47308.3234 42896.7007 79445.6368 44252.5816 50292.6225 61137.4997 967126.5225 64990.1499 62646.8447 61972.2487 62551.6095 62551.6095 51534.074 92046.0823 72115.0744 55589.2343 183920.619 79998.8594 49228.3003 34650.738 52817.052 41468.7716 135038.0823 58679.8371 73047.2636 27261.5775 47502.0166 50631.0948 33470.0368 74657.9311 395809429 nitro Organic Remediation Others NA Pseudomonas stutzeri DSM 10701 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 12036.3415 8892.4817 16414.3914 8023.8222 12724.8835 6483.8068 15330.5997 6127.1609 8413.4556 9076.7149 5202.8736 186012.09 12789.1833 11521.6001 10550.9696 13906.5754 13906.5754 7328.9717 15739.1947 10263.2512 11173.2379 19029.1568 15195.8542 6785.4769 7090.3574 22815.3136 5326.2267 24613.3713 14734.3989 16051.4656 7242.8155 10900.1999 8088.4938 12037.4556 17275.6573 299816756 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 5773.8712 5746.344 4464.8665 5308.1073 2919.8239 5958.0438 6929.8941 3499.3292 205833.2113 7124.1492 6696.9116 5214.7312 5487.8215 11849.4439 8360.0161 7759.2053 8542.7514 9502.1611 3503.882 3872.3086 8743.1745 3697.1675 19065.4979 7707.2998 11520.7244 3278.7823 5708.8203 5162.4715 4151.7002 12697.1886 344317269 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 947645.9578 60845.5798 66394.4583 132675.4409 106241.3278 24080.1549 114131.7041 108557.108 65801.5312 74680.0771 368759.6964 70147.0802 2134843.8544 100388.9898 104034.2625 140655.9123 69327.8224 69327.8224 75500.1937 108871.9158 79449.9134 273478.6411 124179.6338 143718.9274 48415.9697 42519.9508 98342.6924 50899.3929 163116.8578 118920.9124 128430.5263 54905.928 66216.2934 87839.2825 53775.4844 118086.0547 288332256 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 299 str. F0039 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 299; 11045.7634 11663.1865 8965.8808 4786.5018 4833.8625 4310.0386 18183.5007 2958.151 94268.1523 3937.9974 5244.3207 5244.3207 3977.779 11481.9321 6391.4641 6933.5662 7657.913 4854.1886 3131.6994 3316.0822 6523.1756 4805.9793 18524.3473 6863.1178 9237.1409 3976.3377 8548.1698 4299.8834 23101.7662 7162.93 111055384 cutinase Carbon Cycling Carbon degradation Cutin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 126049.5166 5255.9846 50052.1662 7966.2545 54351.0377 57388.5224 5237.5855 10778.1505 18279.2235 4932.9782 4932.9782 3765.6692 13014.6725 6216.4277 12542.29 10115.8431 5597.7731 12669.7991 7953.8638 9526.9486 9583.3875 18497.2206 8076.5485 10521.1149 2917.1291 8759.3302 13186.4684 8409.8915 7092.4402 260428143 tktA Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 12056.0262 7554.72 4662.0441 17385460 narg Nitrogen Denitrification NA Pseudomonas sp. Lgg10.5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23081.3641 12052.6136 7314.0553 16236.7475 6976.668 9715.9955 13637.7044 21371.5876 12494.0282 15214.9937 293297.1401 14604.3684 113436.1583 13671.563 12093.8478 12093.8478 8964.3214 24582.0782 12367.3519 38092.7452 33699.5265 9679.189 12793.4181 10675.9811 25923.7061 9849.4325 64535.8824 24580.3925 27396.387 8998.0081 19607.4329 26939.6314 14111.0672 18240.4422 88865992 vana Carbon Cycling Carbon degradation Vanillin/Lignin Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 79774.2018 16149.6869 138781.9301 74680.8692 73115.7776 24346.7977 61720.2119 472799.7731 71626.8267 96660.9034 99216.1681 48318.2407 1686837.1025 95421.5809 77908.5259 64609.5039 72678.4781 72678.4781 52871.1679 97798.6811 54338.1489 137364.9876 171671.5377 84657.6489 84121.2776 64797.3996 76736.4195 81676.6676 166204.0683 124093.3341 221521.4934 55765.3135 57083.1644 64268.1004 54156.6878 100252.2839 301638295 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 7012.1021 3420.6823 7533.4497 2722.6064 3824.5022 282600764 cellobiase Carbon Cycling Carbon degradation Cellulose Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7872.3659 7445.1173 5102.5654 5110.2236 5675.8412 7082.8893 7633.0363 4912.6461 157548.1332 10318.1466 7768.9171 7818.9741 6127.8309 6127.8309 4789.1173 10635.7771 7436.5299 3913.6449 9826.6712 7839.7013 12823.2145 5036.3623 8357.4438 5103.7519 16752.1656 8193.7014 14096.7405 3554.2556 6627.2794 7103.7164 10935.7048 73855.5991 212705332 atza Organic Remediation Herbicides related compound NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 5709.0365 6444.7078 3593.6941 1715.513 2347.0684 2258.5895 6736.6054 4460.309 2941.5217 67876.2485 9975.0442 6252.6477 16204.9097 16204.9097 6845.298 10850.4548 5248.7065 7243.7511 6676.2319 4106.8353 3194.3062 3374.7499 32907.7034 2200.2573 12370.7811 4339.1662 7189.2773 3201.6619 4430.5047 8456.5204 2362.2481 9101.7104 221208445 catechol Organic Remediation Aromatics Other aromatics Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 17240.9468 66471.4372 5059.6946 14570.7569 7600.748 13501.2825 18327.4809 12209.5061 19456.0054 30484.6657 227629.9746 31289.0545 18514.831 34280.2872 9388.0266 9388.0266 11823.1785 27394.02 12977.1585 16545.1627 26315.4593 20982.2324 19860.9967 153893.4321 35414.7963 15065.3376 48382.6095 49897.4424 20880.6287 7782.7047 19838.4491 38882.2095 27504.1276 6030.5414 187936462 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9007.4324 2829.0472 3194.9476 4171.3654 5414.4968 62756.8681 4443.2926 3348.4159 4388.642 4388.642 3594.2238 8199.2713 4804.5483 4663.2487 5998.4578 6971.7322 3741.5349 8337.9509 4307.6939 11454.0957 5923.4688 8083.3282 2278.2222 3890.0902 4841.9524 150030891 poba Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7988.0048 18104.5261 10515.4496 2753.5284 8072.4869 5824.8904 7764.3144 5750.7649 5750.7649 7915.9434 2716.0191 6711.1012 4676.1437 6656.6788 1983.2236 3186.1098 14523789 napa Nitrogen Dissimilatory N reduction NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 5050.1986 5538.5501 2039.4788 6066.3212 4506.529 92588.2854 5886.8212 5431.8623 120282.1592 5408.8941 63394.5822 5780.3456 5780.3456 3449.3997 9214.1246 4454.9837 3452.4182 4025.6425 5723.3542 6971.9241 11296.233 6884.4022 9076.1958 3796.3073 4845.0901 19160.6809 4396.2125 20807.2489 359791858 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 19924.6565 1000130.6088 8534.9594 46212.5067 7027.205 7855.3472 13561.7872 4491.1051 13998.7002 89306.7403 13711.3958 348987.3981 18749.3183 35864.6333 33760.1783 14643.5507 14643.5507 36150.5815 41013.1264 19564.586 13667.2837 24351.156 23551.5414 10997.7059 21439.636 37555.254 15378.3439 57422.6774 24003.9218 47577.1009 10441.2436 30740.2534 35216.7936 10075.0973 15979.9182 385668373 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 8998.2277 88983.8904 20160.6457 5213.0718 8902.9758 15154.9408 4771.9823 5365.184 5637.1313 8663.4129 86032.3049 7507.0834 8476.8039 6962.8387 7611.8915 7611.8915 5878.2573 11814.1281 5315.4482 9186.16 9268.4859 6570.6955 3478.1889 9371.2783 7182.8182 4355.8655 10161.7258 7727.5764 10448.9611 3261.6941 4357.9013 7377.5786 3290.8278 5363.1136 359309122 urec Nitrogen Ammonification NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 7710.272 12589.2849 9241.4937 8406.5863 10656.9392 11731.0122 7125.1426 11814.6646 4644.3001 190594.611 11221.2731 6514.6641 6411.7731 3280.3986 3280.3986 5384.0076 13931.4244 6541.5034 6775.9985 10248.6218 9380.7983 4141.4402 4844.837 14352.0623 7001.4551 23144.8524 29362.9113 11384.2017 7686.4266 7856.0801 7536.3455 6226.2306 9208.4765 82940331 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 73404.3523 27346.7309 14986.4897 8489.9419 5354.0883 20949.8478 20012.6463 22552.5797 19680.3301 13641.2941 42075.5501 253377.8468 35547.382 50162.3152 45014.549 17256.5417 17256.5417 18411.3003 42663.7014 17118.1109 35878.2363 54998.5542 46289.0622 20415.5452 19329.158 25659.4373 18115.8638 48732.5732 36338.8838 57432.1087 26494.1551 25583.8049 24592.0862 16010.9941 18130.8979 290568551 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 9652.6978 31173.5105 4709.1826 14180.4266 130900.7502 10204.8432 15255.6861 19391.7945 159235.7037 46707.9719 35326.0103 19678.0004 16740.6246 16740.6246 7804.3508 35175.8189 13319.8903 5259.3956 32152.3823 6465.4862 13472.3764 17544.979 10045.3052 17797.461 23821.5773 17234.2899 37292.8969 51012.5098 26612.3275 10234.9081 7940.4775 36534.4892 334145629 proO Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 24687.752 7992.6533 19100.2515 9401.3575 9900.8342 5449.7083 7244.9885 4913.6478 4913.6478 6168.5081 4871.2171 36081.7827 6105.9118 2763.789 11202.5559 19382.1347 9331.0522 10364.1452 11610.6244 5927.2008 15964.4028 4448.8717 5345.589 397321096 b_lactamase Virulence Antibiotic resistance Degradation Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 8197.2768 110319.8164 6810.6151 8513.9585 10719.2474 5889.7827 7357.4745 135553.9979 9890.5383 20704.3553 8343.8545 144152.847 8698.7457 14179.0117 7781.7224 5720.2052 5720.2052 7418.6897 21303.1913 12714.9871 16498.0144 16343.2906 17222.9451 7710.6035 2535.0708 13741.8958 11245.6045 28594.8707 9398.1757 12079.6101 7719.9358 9413.7298 9332.7689 8122.0108 18724.4791 34483923 ppx Phosphorus Polyphosphate degradation NA Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 6863.8791 8152.6084 3762.7605 4881.8218 3536.7655 4902.5493 9419.1314 3572.5043 186263.7066 7475.5236 6868.8548 10392.1693 4691.3288 4691.3288 5736.1705 9896.374 6016.1471 8584.924 23526.5428 5931.4356 3441.3121 4212.0488 8932.7035 3726.1835 15558.15 5773.9681 12973.62 3781.9947 4996.8301 7669.4362 3870.3759 9495.7677 197625877 ppx Phosphorus Polyphosphate degradation NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 7859.4046 1777.8376 6310.5176 3680.6052 7972.6545 6722.8511 1790141.4773 7221.7766 179838.1428 2614.9197 8407.5956 5755.0814 11837.735 5936.4631 4090.6854 2432.4963 9835.0724 4367.2068 13298.6673 1779.2703 2554.8393 3467.9856 21693.4823 147886244 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 34843.3643 9856.0829 20193.3795 11051.4576 30286.0826 9103.4076 13326.3839 14231.3172 26592.1592 49285.6438 262260.4146 26908.8955 28889.0283 43587.055 21834.3696 21834.3696 11449.0403 49265.3826 14148.516 23911.3074 28385.2626 12705.5737 12544.7446 17846.471 46769.8055 12321.5589 33687.2508 48714.2951 35063.3656 7312.6491 36132.8875 20082.8117 12582.3241 36943.7089 302524462 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 483768.389 71288.0297 412468.0656 586492.4213 247990.7386 79486.4775 172033.086 439858.9427 274800.8091 323120.3612 429985.1324 374674.5652 8304804.5951 332702.3005 331351.8032 1018743.0583 517943.1255 517943.1255 394747.6552 523892.9012 263951.435 463404.9594 907100.0599 1094718.1956 225159.7664 361319.0651 333582.1617 312533.8923 728778.4158 341268.294 355178.9765 164771.923 204734.9247 312717.6889 220383.0111 977949.7594 91977216 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 59817.0766 28386.4299 10365.8791 172171.8879 17450.2182 12720.5227 72384.6463 4194.332 5628.8154 13760.9522 8512.4081 100723.2343 9686.1973 8350.9804 45293.696 7993.859 7993.859 4950.6823 16907.8092 16436.128 30710.3305 42220.1979 7621.1415 10961.8108 9619.2092 15673.7014 12863.8806 129528.6268 12485.4183 21339.0123 16529.6664 23269.2505 8617.4645 12572.6318 84220.1461 56479332 arylest Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 5558.7295 37233.3541 54248.542 7737.7729 2743.5549 9894.7438 2411.8673 5486.7237 23266.081 4738.6003 61124.4276 16183.9869 8203.1664 17476.5809 17476.5809 79365.7589 14323.9536 18501.4836 6182.2939 8028.5088 4093.5625 3303.0096 7890.3521 10772.0685 18811.6648 27045.9485 6780.7542 9381.7113 5257.7646 15729.3529 15540.6955 4777.769 4418.3498 226318818 gdh Nitrogen Ammonification NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 20935.6878 149055.8776 29113.4186 31210.8712 15100.0624 14947.6552 15651.1525 13174.3744 48769.3859 22000.8293 12260.1745 337639.6743 17960.1518 30127.0885 30568.7709 11693.0659 11693.0659 12840.8042 28275.8114 22163.3439 28049.1393 21571.6137 35525.1132 10422.2017 15716.9643 23830.9996 18297.9804 40839.2371 15462.0243 29203.1899 8283.7532 15221.5217 18910.2892 9338.5425 22909.6093 158514478 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6432.3052 3229.7011 6543.0832 55283.8924 6158.6454 4110.0485 5783.0451 4675.0128 4061.1075 3931.2935 3153.8639 2115.3708 7582.5027 5369.3671 5133.4304 2716.7266 4300.3725 90954571 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 106116.4067 22103.4955 288615.9222 39609.0007 41789.2343 12662.0128 677449.0493 153582.2671 66937.2043 57934.732 72833.0892 84880.9641 2159049.2467 38450.3594 68973.5417 261518.444 101580.7712 101580.7712 33045.9506 210891.9649 59634.4025 77793.173 127716.3824 202970.7008 55396.9458 75838.1524 130727.2657 108409.8533 188509.2776 111394.1021 75433.0243 42613.5113 158939.4621 79500.5286 53019.5064 89487.808 284028820 merb Metal Homeostasis Mercury Detoxification Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 82136.1716 12089.5497 31569.1885 17678.1662 69616.1508 8294.5027 12581.3483 40736.4614 30048.4514 35620.1838 60387.8793 25200.4646 702192.7667 32229.2254 45811.5579 39440.4772 38808.5445 38808.5445 40620.2973 80727.659 29802.3136 106525.219 55092.5095 31017.4794 19152.4401 54799.7723 53313.351 25554.1188 149990.5169 64791.5281 51840.4573 29948.3131 60073.3702 44071.5172 15561.607 46874.5512 300390388 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5663.2489 10937.781 6663.8767 4459.2525 39760.4077 11381.5142 13909.7107 5764.5425 3712.5836 11423.1382 11423.1382 6268.463 18852.4281 3675.4901 7154.1144 6431.8349 17316.4527 6428.4962 5300.4784 10011.7004 14617.0265 10943.3474 10738.0011 9071.7366 5572.942 6515.2012 6247.1142 15388.3831 355538028 pcpe Organic Remediation Herbicides related compound NA Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 105452.3968 53195.2169 82518.178 42415.5228 83378.621 6369.429 67736.5878 107131.5381 49307.8124 128938.7097 141520.894 71955.9377 882026.3449 101703.1082 103873.7237 88746.1357 70100.7192 70100.7192 57815.6203 120465.4413 66714.1125 196668.77 198309.7807 150144.8317 59380.9717 58650.3062 67222.3166 98833.13 198405.5669 175942.4008 107562.0609 46741.3604 78510.4753 79832.6167 75953.8017 106297.978 154244885 bphd Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 6120.4359 5624.924 17619.7896 17961.6795 5620.5349 15405.86 8673.703 6175.3977 6716.9405 4892.0202 124870.9921 5284.3501 4553.5171 8050.8616 6158.2507 6158.2507 3735.6413 12810.1986 10739.1856 7344.0627 7640.7245 3519.2573 15978.7088 8885.2039 7605.4307 22450.072 7310.5249 11766.6831 4039.8663 8255.8029 7320.0248 3691.9073 9928.9775 40253093 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10276.2977 6172.8754 15445.0064 12312.9774 6176.3652 6523.9013 9198.9139 11374.595 11395.4265 179994.5485 12963.2199 12885.9633 5157.9436 76315.6242 76315.6242 7087.4633 19684.125 15758.0844 8320.1835 18848.0395 10405.6093 11560.7121 6143.2524 13023.842 5833.2789 22938.4615 15096.5751 14936.3636 6177.6932 7712.5273 8004.2744 6101.6031 15454.019 88780010 ppx Phosphorus Polyphosphate degradation NA Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 5617.6567 4420.9903 2258.5813 2669.6377 3654.2721 6206.9309 3933.6066 84590.7067 5945.9228 8963.029 11436.9853 4895.5103 8069.3983 6000.4719 6716.4191 3079.8686 14752.5113 8490.2183 6032.3265 7047.7616 4071.3106 2831.9597 218433141 hcab Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 22454.2014 15857.7282 9354.7686 35812.2474 537843.189 8056.8214 7610.3164 16769.1222 48554.6564 35253.6481 1265032.5218 136566.0375 39625.2047 30386.8953 12628.796 12628.796 9915.2311 118302.5604 25726.6436 50895.9571 50063.3134 694695.3909 12218.1808 21446.8997 22162.8813 39108.7136 34719.2864 21042.6491 42950.7322 13970.7367 28764.1154 24094.1588 20982.2313 31027.096 315602559 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 78222.0709 34364.6699 38448.5816 253051.0489 48684.3083 36409.4364 91892.5043 68557.901 302274.8512 53929.0376 86420.8019 83023.9142 1373270.2483 85232.0191 71010.1761 109050.4322 86996.25 86996.25 35727.4962 85359.868 88609.3849 41046.6987 85595.825 103335.7682 46250.0792 44500.4986 74268.9237 84272.4277 113594.9089 77205.4219 69565.1336 40606.6622 42512.8558 62809.4198 44527.4988 69185.1373 163794005 soxY Sulfur Sulfur Oxidation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6694.9801 48033.5481 5519.3349 14178.7999 19072.0756 7880.232 4199.4262 8666.8352 5833.7894 71970.8352 8053.4975 18327.9279 11272.6029 2568.8741 2568.8741 2906.6233 45780.7363 6434.2724 17760.5131 21755.0328 71337.0267 6039.2846 7314.8913 21492.4654 17560.6992 10846.07 26207.0047 5949.0143 32910.4109 11569.8478 12404.3793 7897.9422 332273991 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodobacter sphaeroides WS8N superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 23430.5514 11929.7114 11774.4068 215215.8463 27473.7626 27978.4239 44774.6865 30555.159 9535.3702 84275.1685 105836.6004 71522.7556 515318.9882 158906.502 26760.6513 21127.4968 17702.515 17702.515 22121.9753 49349.0725 23141.0234 18970.5137 20461.8678 30758.6973 12127.6186 17988.3677 33072.4761 16139.8012 56704.3892 19890.1301 40266.9986 14460.7403 39784.3659 23474.4628 16735.7245 30230.4228 28853001 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 4253.6258 4955.6265 1973.2727 5866.5428 5210.4333 4773.9116 3909.8394 4498.8915 2316.8634 2316.8634 3829.4952 11190.1354 5145.8611 3803.9467 4615.8296 4805.8538 22340.6805 4157.363 6051.1229 2639.3672 9983.4696 5685.0426 7764.1299 3317.9916 4058.0723 5603.8884 7910.4512 6788.0416 194713779 dmsa Organic Remediation Others NA Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6734.5038 54141.2264 5624.0371 36382.4029 6135.6662 287167.5377 5244.4918 6132.6565 9617.6363 122601.5764 9556.0721 7045.3728 42670.5691 40979.8636 40979.8636 5856.9357 21296.8648 6955.3172 8629.0891 10067.8918 17481.0949 9720.2986 8516.826 10598.4605 19251.787 30540.3915 10954.9017 16708.5324 46477.1812 10598.2045 8391.6723 9744.1734 16685.8831 76664073 gdh Nitrogen Ammonification NA Nyctotherus ovalis superkingdom:Eukaryota;class:Armophorea;order:Armophorida;family:Metopidae;genus:Nyctotherus; 7297.4776 7006.5775 4449.3362 3723.2038 3628.015 4382.3465 6824.1973 79379.6338 4935.2827 6907.2156 7166.5865 4520.6876 4520.6876 3144.8326 10331.0679 5806.4835 6753.5577 6389.2673 4754.8412 2671.6857 4371.7167 8909.129 2267.3804 12512.1522 5223.7349 7176.738 6324.8486 4886.885 2864.8215 5782.6774 456029 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 68640.9784 627207.3143 25173.3409 32666.5516 13808.9842 29418.0202 35139.5655 34048.3045 70434.9141 112614.8445 44122.0038 475396.9975 30436.34 85686.9133 34000.856 29098.9494 29098.9494 35534.0856 94152.2596 24976.6002 43108.1693 73937.2063 89386.7655 77528.6375 39166.2601 85983.6492 45035.1732 68046.3839 48672.6048 56033.882 78236.1729 61742.0969 53179.4192 25084.1065 43838.0959 22294666 ccmN Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 16436.7715 16465.6864 122094.3729 253723.0865 263909.7862 12003.0608 138907.4778 4070.2956 33650.5218 58498.7893 23607.2355 554864.8172 54417.697 59410.1734 57925.088 23675.2525 23675.2525 32533.5728 66099.5403 84242.3514 17572.3034 35956.7102 29299.3848 12423.616 49853.7341 168980.7494 18824.1262 195929.7678 91580.7119 170826.1468 40060.5996 42932.3152 64558.0877 22920.6691 48301.701 78065954 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4177.2179 3908.0559 4692.8541 2689.9279 2550.1932 3228.8202 5094.3382 423320.9576 4211.4838 3613.4932 5361.4756 4104.5659 5061.1838 3216.0442 5377.9881 2272.8882 9838.2402 5231.9928 5886.0571 3449.9512 2462.0482 2919.2393 3291.7512 73539681 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 18028.2073 18250.43935 14194.6549 5237.3854 15133.08055 13460.36655 31943.89515 21682.8093 475004.37305 24002.58875 23832.1272 19556.6418 19556.6418 20394.67015 20367.5823 34735.84825 35853.20015 25068.7311 28245.8113 15262.0105 27414.0323 16209.07325 76384.8795 25240.0511 35116.77945 13287.195 18237.43555 24869.5717 22952.7138 284447539 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 8775.1205 2025.9383 3105.4872 3215.1716 10001.4893 3471.0526 161367.902 4772.7934 7908.243 3666.1477 3666.1477 8055.3872 12249.5198 9480.2508 7495.8695 31041.3188 8311.7281 4047.2192 4087.6666 10428.7622 2166.331 11727.0516 7885.8229 9250.7985 3503.0099 5610.6131 5397.0793 3224.2096 8099.9799 333486221 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10099.9453 6457.719 13907.6566 46803.0102 11375.0622 32773.2557 22204.008 19755.4918 9518.4492 13577.1194 21223.0907 351029.1844 24676.4145 14567.4561 23223.5322 16890.2698 16890.2698 9005.707 23272.5484 15736.7425 8953.9175 13617.5642 13805.0944 8441.055 10421.5622 19647.5079 17728.2294 30346.9922 24127.519 16441.5198 19031.7508 8650.1937 8205.2598 6446.1815 14783.4868 388482526 pcpe Organic Remediation Herbicides related compound NA Variovorax sp. DB1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 23530.9994 949045.9488 58405.9338 6528.1023 12921.0113 11751.59 8018.5139 7062.9056 82600.5168 9087.3728 8753.8787 27461.4578 20132.9637 20132.9637 6606.3132 28982.2126 6061.8765 64841.8425 37721.8887 8676.1012 8001.6644 34738.5187 10984.3711 11476.9552 52066.3773 15223.6217 43628.2162 8647.4568 16988.9751 36645.5105 9963.5047 8904.7366 139003319 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 14874.9889 7653.5113 9843.7505 69572.5815 22629.8882 4165.9367 16920.8149 32085.7945 54378.4673 23873.401 25694.0712 348733.2412 46824.6078 19218.8879 35460.2603 11735.9274 11735.9274 8736.4903 19621.99 8990.5125 19747.1104 55531.3814 104295.8209 16947.1231 10538.0338 26060.5226 15536.6496 35954.1819 15849.1568 21735.3 29080.8556 29374.586 24576.3313 9850.4058 31229.7836 152993065 arsc Metal Homeostasis Arsenic Detoxification Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 7885.5567 14600.243 9197.1373 4480.8105 5433.8597 6078.9346 14317.0914 4789.3888 10880253.4935 4393.8892 6537.7 15606.1221 15606.1221 5484.6473 161612.5189 7026.7963 27138.418 9048.0419 7278.8942 3396.9129 5018.147 9473.1168 10877.7616 25040.2239 17035.9809 19726.9476 7620.8056 7955.9609 15763.7162 2874.0173 10224.8948 111611199 vana Carbon Cycling Carbon degradation Vanillin/Lignin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 73128.0719 26936.2403 23490.4607 35930.2699 87120.404 31066.1278 132221.0802 101636.6772 16540.7505 44092.7254 46067.2992 47348.293 899319.0705 45653.3912 58431.9454 52670.7917 38402.8749 38402.8749 20157.675 80527.9553 30480.5369 35867.79 79598.1329 26026.8723 28038.2641 36571.7699 55243.0248 28496.6674 335552.028 100794.4733 53710.2505 117154.4073 39278.1989 56608.3567 18249.6292 50244.3205 398805245 B_lactamase_A Virulence Antibiotic resistance Degradation Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 35119.4793 19887.3888 10411.4276 29186.2278 7234.1284 11203.2637 18209.6337 11726.8448 6842.9758 5978.6968 25052.159 1237541.7921 8510.9654 38253.125 9587.7376 7154.8152 7154.8152 7810.7108 14099.9302 12466.6938 14659.8263 21098.5115 13311.2299 8335.4604 15190.0686 16479.8439 21218.3461 35889.2845 32667.8919 30367.7731 6941.7486 14356.789 350835.9876 17421.4508 6874.1123 254271981 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 182587.9767 22120.6743 10790.3044 61924.3357 7020.3064 12282.7907 58216.7505 27076.5978 7196.8792 7110.6255 11753.2157 1091245.5313 12533.0963 28479.32 68027.9358 27110.2431 27110.2431 8351.0407 40146.8184 20564.1694 20917.0332 30871.275 12226.2147 17881.3985 20063.3173 17890.845 10579.1578 40616.9691 12878.854 14826.3688 11293.739 15226.159 36990.2061 10627.9096 12006.2094 339273494 cda Carbon Cycling Carbon degradation Starch Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 4783.887 2811.9078 5290.5981 9957.1163 12409.3172 5259.8113 3522.7304 3522.7304 4804.4131 22322.308 15809.7637 6574.9723 5436.888 8857.6615 115366578 endoglucanase Carbon Cycling Carbon degradation Cellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8003.7724 5996.912 53989.092 3243.3472 3468.8723 2672.3702 5319.8057 5787.3999 3496.8525 133966.8993 5751.7779 4623.7962 2856.177 2856.177 4760.673 8343.0964 6231.3793 5690.0722 16388.5019 6755.228 7463.7718 4314.6712 8920.64 3434.0287 10237.7584 12564.6337 14928.3924 4632.3286 6116.4518 6842.8712 6327.4952 12866.4546 10639669 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 22353.9901 5762.7544 27362.3556 6452.9815 8784.4529 10887.4052 45758.6257 27992.9074 6770.9019 139048.9891 10419.513 9299.7832 51271.0262 13722.211 13722.211 5100.0759 15367.3358 44987.7499 15747.8906 14858.1109 17900.5402 9052.879 5400.5339 30597.9052 327680.6625 389789.0611 56649.1901 17949.3863 109785.1601 15934.3226 31780.9165 6506.1326 13367.2433 327480842 cysI Sulfur Other NA Pseudomonas stutzeri DSM 4166 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 11579.8892 86964.5057 8339.6088 5272.637 14129.5372 8874.2452 5668.3908 6469.423 136761.8754 9757.6297 5339.4006 7381.9336 42908.0792 42908.0792 5004.3932 10410.852 14834.7932 7833.3108 22754.9483 3550.6619 7110.3807 27645.1887 15464.6922 28828.0829 8647.8141 18681.6987 28590.0759 22898.067 7091.7044 4162.6112 5278.3992 51872779 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 5805.3321 7950.306 15101.1463 4203.9919 62704.2077 4386.6681 3973.9879 2471.4935 2471.4935 6969.4675 4612.6463 4490.2372 2280.2391 2796.2268 9767.9657 9698.1058 8546.8936 6857.4271 3453.5175 3868.1378 2469.2189 350544173 amyA Carbon Cycling Carbon degradation Starch Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 27891.2636 9240.7307 14478.3732 28686.8267 5528.4212 11987.3188 10543.3707 22870.6026 20921.4238 18653.8992 175604.0431 12296.8501 20844.8218 43251.7478 13660.8075 13660.8075 5306.6912 29959.4932 10992.2483 15717.459 12091.695 194496.0692 11241.5632 14827.5303 22646.4847 7790.2757 79018.4598 29549.1166 15859.393 11079.7109 12964.3358 8916.332 7680.4747 7365.7532 116253750 pgk Carbon Cycling Carbon fixation Calvin cycle Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 20251.3087 8555.5142 14638.5888 97606.1635 7646.597 9315.4897 54400.9587 7905.4587 10418.5159 9015.6504 131342.9485 8319.3998 43705.7596 37218.6264 13455.434 13455.434 40796.4509 13369.0548 8199.3494 28100.1383 15979.952 16718.9244 12637.0232 5438.91 16348.0128 15286.1131 13853.8542 2924.4619 12777.9022 15500.027 3228.598 7241.0425 297163563 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 84857.4616 4516675.3931 1380344.5651 4327.6005 13435.7032 7950.458 5457.7591 4269.5874 8707.7731 15187.6477 10846.5865 106988.6813 9432.7799 11410.7519 3732.4272 62711.3817 62711.3817 5714.1387 14368.5594 9056.2138 9352.4722 23903.694 8885.6772 6866.717 5786.8555 14915.9003 6319.859 26074.979 14692.1739 14056.8976 14391.2697 30475.5629 8473.5767 10425.3346 876220.9881 19716121 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11995.3046 9140.6208 11420.4499 7780.9966 9653.7876 5019.6496 9833.1891 10609.3565 3707.2043 232141.1876 15470.7196 11082.1678 6550.0947 3417.5283 3417.5283 7465.7835 21498.7915 11057.5779 13300.1472 12214.5869 13469.2685 6903.0479 5603.8604 16745.579 6345.188 22945.3424 9844.7178 13377.6848 8259.317 7540.3218 8088.9464 6314.2958 15304.3736 145576103 phn Organic Remediation Herbicides related compound NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 10449.0707 3552.1756 4302.2023 9095.6479 5217.7412 3900.9757 8083.3886 4385.8466 4385.8466 3072.8312 5093.1773 6304.952 4475.6196 10921.6725 9093.5826 5354.2891 6060.2237 16863.7606 5024.5673 3782.7911 4705.2835 7156.2981 336399379 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 5787.254 59209.9557 5953.8753 7217.6688 4054.078 15841.8783 8555.5814 5634.1777 294954.8884 5003.2838 4119.3632 17878.638 17878.638 5559.539 13211.3682 8025.1169 7237.1393 6918.4233 205931.3122 5641.4784 14986.7885 7974.1506 17093.7218 8816.8557 17855.1496 6049.5336 11146.6114 5399.9254 2549.763 356676328 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8519.3508 11710.9589 7123.1242 6610.4965 13627.4532 3143.5507 36178.3991 3380.7535 6913.6329 10096.7111 7907.9065 4569.2606 2808.5138 5869.9748 3821.3308 18327.7206 4731.4761 7104.9575 2206.6753 3644.1627 4258.8614 3059.0392 333022724 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 19877.2948 92285.28 8552.4371 16391.6473 12965.9404 15495.2151 6537.5696 21187.2354 7748.4042 59986.6797 15679.7133 25352.0041 276973.1031 25093.2636 61670.4325 77259.9779 36969.2677 36969.2677 23442.9795 17916.6726 11941.476 30579.9616 28619.3028 5515.2412 10164.7524 21761.1317 37209.9016 19900.5331 41386.4858 30395.2722 22814.1513 6723.4841 34273.8497 19409.4985 8976.1623 8912.1633 158523622 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 72544.5513 7438.2621 4825.9456 10026.8469 9783.4762 11993.0024 19229.9545 3683.8002 237632.1218 7238.3582 11001.2712 6062.6352 6062.6352 6267.9653 16203.7719 9184.1608 15641.4454 15971.859 11259.4149 7175.4687 4425.8625 9087.6046 10967.5476 19578.4797 12749.8263 13968.7036 38054.7036 8740.5402 7778.1231 5899.554 11147.7864 13424711 cysJ Sulfur Reduction NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 33368.626 26269.0772 11427.3822 173957.1623 11558.6429 77882.1433 32314.5647 143329.4996 27658.029 64147.9004 60826.0275 669801.8359 29163.3994 62225.5961 43447.9166 36782.6199 36782.6199 39214.4764 59786.6122 33033.0952 79095.8425 71600.9274 34855.7899 49198.6175 30039.9593 63240.4566 36194.6304 92123.2934 62793.3132 51436.1881 35435.8004 38599.2617 34060.8883 23491.1838 37738.6769 177841041 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 66030.9162 27061.5827 80995.5832 16945.5844 5397.0436 18079.7767 8893.6003 33693.9113 34251.2365 23714.4735 34944.947 365298.9978 17553.7541 42265.0004 471473.9789 39948.2093 39948.2093 23090.0831 65689.7591 28836.6915 72234.5157 40016.5121 23316.5723 30443.5265 26789.7768 54066.5762 89164.0573 102797.5922 25376.5114 31362.8953 15819.1381 20398.4845 233617.8274 28657.8716 84089.3944 238059140 merb Metal Homeostasis Mercury Detoxification Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 25855.5894 140252.8159 16711.2493 83833.4197 11490.2026 4744.6182 10883.2117 3867.613 10215.1516 15660.576 14775.9047 310157.7197 16334.1642 26045.2196 52964.2145 26399.1638 26399.1638 17116.8919 24207.0748 16625.3008 12417.3033 12714.9518 26795.8814 11050.7312 35959.9545 35982.2971 11163.2962 44288.5047 30209.5902 32599.1378 12682.0418 17103.1081 9918.4589 6548.9728 15894.1962 284167058 chna Organic Remediation Other Hydrocarbons NA Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 40887.0214 963073.0906 20061.9767 9545.2324 9752.4039 117715.509 6677.784 12493.6977 20146.8787 8435.3292 291548.0292 36674.1418 15089.7184 17754.5225 22801.8304 22801.8304 16423.3292 23072.5033 16669.0831 25774.795 27271.111 19148.366 11183.4622 11000.3486 18959.7543 13837.8635 64656.1513 24760.333 17366.607 15197.9528 10107.0529 12795.7283 11888.3276 26004.5446 54026179 ppk Phosphorus Polyphosphate synthesis NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 5774.7951 16886.5669 6780.2755 129284.9208 16382.8856 5283.673 4875.4845 3799.645 4671.4262 3883.0468 2627.9951 2068.8507 209486129 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18118.0717 15315.3247 4939.7709 11208.421 7170.4007 13060.2237 8353.9085 16418.1481 10689.5663 13682.6658 22032.1885 230568.1301 19073.2756 13546.3389 6519.5353 6856.4864 6856.4864 15802.9981 23006.3755 15308.1276 496788.8709 46483.9307 22663.2873 10027.9524 8926.3883 52548.3308 10485.9664 36419.2273 12311.692 19476.3714 17507.1326 12093.6895 80001.8969 9482.6912 23998.6925 73534359 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5818.445 36982.3447 9849.3246 4511.9346 21651.5833 7265.8454 6681.6436 14634.2253 200189.9356 10762.1134 7960.9674 21053.6268 9380.2309 9380.2309 4399.2877 14650.8112 9663.1564 13283.8543 63361.9049 13396.473 6227.4819 4922.8743 13791.9262 4702.8319 20834.0271 8918.2302 28076.7068 6671.7644 6113.4586 28092.0162 4156.9444 9496.0906 345134858 badh Organic Remediation Aromatics Other aromatics Streptomyces sp. SN-593 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15175.9846 13165.2313 6081.8831 6232.9714 4424.2618 7379.8574 23337.7773 7888.274 253494.7114 12558.1425 8559.4275 6116.1202 155984.5496 155984.5496 6265.8556 17753.8558 14548.0865 211882.2851 16038.7673 19044.666 47960.7271 8449.8126 14022.7992 5256.004 55761.8633 41183.4208 18880.1227 4782.4186 16991.2826 10043.9811 11016.4969 15522.6721 157410051 terc Metal Homeostasis Tellurium Detoxification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9339.6871 11533.638 7304.6168 9338.7703 5124.4813 2840.0875 9658.7141 9309.4038 6539.7972 122192.4947 10017.792 8115.4289 4062.5345 4076.6249 4076.6249 5321.8068 15308.911 10088.2131 152927.4662 12468.5567 12285.1512 4671.9985 8083.9169 12852.4551 5921.8999 23588.2365 28664.7974 10589.2786 11006.2692 21833.8884 8252.4221 6451.8293 13283.818 157804864 aps_apra Sulfur adenylylsulfate reductase NA sulfur-oxidizing bacterium AII2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4978.7471 7763.4753 4438.1335 2866.961 2508.0166 3867.2229 3791.6952 5097.3518 84393.557 4973.1916 12283.8667 85929.8305 3528.7135 3528.7135 23615.9537 10465.6287 3781.2242 16796.9331 6405.4121 10846.1649 21521.4951 7065.3419 8452.6366 6833.2433 12490.9806 6398.4361 11024.4272 3715.8942 4054.5843 14496.4415 3873.3645 74915.78 333486775 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 60630.1065 38015.1467 18246.8077 15974.1061 45361.3108 15172.5026 11235.4497 14509.3205 22462.073 13669.1521 15829.6033 296255.7897 15819.315 27093.2625 32547.6201 33097.8425 33097.8425 11913.9046 17316.6031 14465.6544 25142.5436 14019.6994 15462.9706 6248.2324 13400.9462 27371.6988 11851.1772 28578.9261 19216.3647 26026.5617 23484.6184 13427.0309 12505.3107 6081.8004 18391.0718 261353232 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 8342.0722 9200.1332 5882.3282 6581.159 4465.8494 3212.9175 3969.0565 6349.9256 5304.249 119051.0655 6730.258 5125.4731 6252.5857 6252.5857 4504.7004 13422.7561 8155.5284 8936.5478 6756.0011 6707.7064 3809.6608 3873.4536 10344.4262 33954.5772 11882.7429 6864.3566 12044.9837 8808.0714 8227.2219 7641.0779 7426.1065 4901.3976 333991723 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 23085.6614 21618.5602 21522.8205 7250.5432 14398.7169 46900.1956 4085.8597 8677.4058 13866.7159 19279.9245 197651.9098 11043.512 30518.6415 114012.689 27547.3435 27547.3435 4073.984 27155.7199 13573.6772 25409.7312 16322.2504 11232.6869 6216.1498 19690.5481 16989.5635 9361.9778 60265.4607 11945.9319 15328.3187 9398.3409 22539.7423 43826.8881 7839.9438 14962.0887 217985722 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7738.7974 7144.6006 5803.913 5348.7614 3362.2575 6987.6306 6751.9099 3447.1801 136206.0674 10736.9469 7052.0178 6194.1186 6194.1186 4867.721 15940.389 10698.2946 8770.0423 14642.0698 13477.7947 4614.3459 5264.8748 12126.4214 3310.9088 16375.7209 11114.4746 12098.5103 3159.4265 7062.6844 7431.8467 4492.2107 16463.0123 380302130 amyA Carbon Cycling Carbon degradation Starch Brachybacterium squillarum M-6-3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 85786.022 32828.3802 61507.0151 1837350.9298 12600.5145 8254.9574 38398.696 96445.3149 45841.6478 44218.3123 143857.8233 56367.235 825354.3384 43797.0032 104118.6262 236242.8286 40328.1511 40328.1511 26092.7075 114156.9326 32324.0932 276458.6851 137748.8847 30914.177 38822.6821 56871.4422 74806.9096 24444.8783 171058.5405 93301.3895 60908.387 36197.5142 42443.0266 41631.4444 66169.5003 49142.0369 311893532 amyA Carbon Cycling Carbon degradation Starch Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 54254.8738 2012625.4246 132047.1947 66747.059 146863.7603 66306.5853 37829.5111 44033.5667 31083.6276 92550.5633 110428.0585 64134.8628 1216864.8997 176205.8659 52866.6669 87109.6031 59782.9782 59782.9782 35505.2702 86303.1039 59337.8238 28344.914 82080.3103 63983.6158 42096.5881 34079.2292 66074.087 53846.8793 105599.6336 58668.1775 68279.8065 30191.4744 34299.6938 45386.6634 21565.8142 147740.1704 59893244 nosz Nitrogen Denitrification NA uncultured forest soil bacterium superkingdom:Bacteria; 145774.8911 5820.0783 4176.0224 4007.8812 2290.4607 4007.7384 5032.5597 3390.2997 3649.4272 2162.7866 2162.7866 4835.3207 10732.2205 5854.8792 6080.2919 5582.6618 2964.5675 9315.1786 41449.8151 8193.0855 4319.5965 4171.2841 3041.7902 3632.3132 88797847 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 27592.6533 8154.625 38668.8595 12254.9348 25155.8245 5743.6438 11245.1299 7769.3393 5557.3079 222117.0344 7034.792 8464.3287 9392.3875 7448.4548 7448.4548 6899.1523 11361.9319 18447.9815 9122.2556 14822.6353 9597.9602 4245.7323 6863.7795 20574.2016 38324.3363 34147.9713 31647.6955 12527.2099 7293.5959 7143.987 7489.4974 6258.6215 8378.3104 112463593 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4746.9748 7490.9201 19550.7158 9009.2627 3550.6857 2656.9801 4526.3444 2991.9882 5313.7406 4814.075 2537.478 4766.6024 16722.3123 251795356 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14715.5698 4920.8882 2647.953 2246.4033 2520.454 4720.4442 8115.2825 5232.5311 6276.7793 5361.9549 4315.9753 4246.2074 4246.2074 6251.4336 8978.3636 4393.8222 12337.5924 9636.1958 10557.9118 3366.2846 4947.7465 7085.7781 4276.0299 10544.3297 9948.8881 6952.2825 3275.8478 6965.3888 4577.5023 2797.6285 7618.054 182892412 urec Nitrogen Ammonification NA Haptophyceae sp. CCMP1249 superkingdom:Eukaryota; 26861.7171 33724.6993 129012.921 16821.7062 8840.1715 9425.7261 8104.3946 10033.1392 13084.3732 32795.7519 14143.0684 284309.0394 42771.6462 66086.1845 277787.0167 20247.8779 20247.8779 13237.6278 62193.7863 10445.6873 12418.1072 30786.0214 13284.2919 8506.9359 15228.8929 21192.4334 8229.1301 46924.0091 29253.447 31643.1207 9015.5511 17424.4417 22223.4907 10459.1259 16689.3668 222543212 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 463264.1446 18856.7063 305968.6525 414097.6811 577025.248 47946.2772 213169.5597 392087.1802 292650.3348 309408.9071 370616.7699 254187.4921 9347137.7804 271755.159 511795.0797 488503.3134 341965.1103 341965.1103 199157.0625 311281.983 228896.7403 337211.2216 465098.9803 1664069.7907 192932.2128 179387.3159 347838.4672 190899.1186 962133.9404 430407.4375 265001.7843 156998.113 209656.8208 256737.5 153278.9622 898706.7461 383826827 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 18244.9119 7476.0666 12032.7113 3238.5888 4597.3094 3196.7293 77176.1329 3896.608 4888.3172 7861.2824 10053.4003 10053.4003 3016.4851 8132.0292 5862.4423 5306.0631 4002.6044 9895.2728 12261.669 6806.3133 2107.6893 4363.1004 4063.5535 2395.727 312884727 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 17018.9864 18690.7856 6554.6426 19076.4093 6568.9719 12594.0457 12403.8986 8358.404 12682.2387 11871.5202 9300.9556 419807.8945 14181.8147 18054.0338 15504.4713 11526.2124 11526.2124 15527.7287 50884.3747 12302.6995 9926.7257 15483.5797 30387.7987 7366.6407 10276.7928 19952.5689 17881.573 31686.0248 10207.8025 21946.5156 15471.4762 9553.8213 23647.1716 14870.4305 29016.6951 385330849 bend Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 7544.159 6490.0603 36643.1438 2498.4824 8880.3652 36193.005 7110.1507 116524.6747 8557.5664 9000.57 18912.9782 6753.6968 6753.6968 4867.2555 12126.4989 14684.6346 15709.5218 10582.4542 100558.6411 6664.3942 29815.544 37258.2296 20774.7313 43579.065 14735.3837 18804.685 11489.586 8399.5845 6917.4751 3841.6872 9479.884 336424620 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4498.4063 3888.2253 4524.8105 4825.5167 3923.8927 4587.6095 3936.3964 3657.4638 5962.3627 99893.5625 5425.313 4530.5884 2837.3666 300390442 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 10486.7102 7119.7161 11150.4157 5129.3392 7946.4033 6353.8122 8836.8816 6201.1294 6863.0652 4380.8825 97355.7687 6710.0905 6192.3767 8462.0114 4000.5495 4000.5495 5653.1399 18343.4095 8315.984 9296.8296 9127.7745 7773.9953 4283.5383 5244.0005 11328.1679 11111.4562 24096.4692 10017.1923 16990.1347 5302.9573 9365.3942 6785.0274 12754.1406 15024.1556 300785821 endoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 18170.0919 5021.7644 12309.5156 4111.2957 6187.4131 3360.5469 4980.3776 140167.1572 20956.2666 61745.0249 5832.3651 8469.9125 6638.4198 6638.4198 13581.8736 34248.3914 10285.9357 7113.1502 16755.8208 8000.1197 11749.4413 10814.6116 7522.5185 5834.9701 23120.1793 9583.8802 14024.4837 4193.0748 9114.0172 15231.9866 5375.7148 145232172 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 4772.2058 11980.7864 74809.3202 3804.2144 4145.9392 4092.9848 3513.6224 3947.9366 4171.9873 1768.6972 4742.5188 116090307 aoxb Metal Homeostasis Arsenic Detoxification Ancylobacter sp. OL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 73147.9406 16766.6671 22977.2621 7346.8405 19484.3943 13647.7982 20926.6645 24857.66885 16346.07445 271985.1775 13531.34125 32605.64195 18820.8573 24007.9574 24007.9574 10149.40915 31770.9052 24003.95875 26005.03545 10040.25905 10587.282 33806.7021 14847.04825 41715.01025 12507.0801 29424.61645 8723.8501 17505.0133 13103.9091 14961.42405 330828578 Sir Sulfur sulfite reduction NA Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 11666.5396 5534.4837 10753.6094 17700.3765 5229.6294 6852.7483 5889.4527 9800.7961 12834.9464 5256.6427 258124.823 12697.8494 15255.7881 6752.3361 4082.4244 4082.4244 8395.6856 14166.5185 10452.4185 10452.9454 11538.2972 18081.9207 5622.0123 6384.1358 16583.9507 6511.7322 20867.2816 7290.4179 17506.8616 5118.2325 8107.4024 8250.6391 5107.4415 18573.2231 116179278 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7370.1987 8860.7353 62200.6073 16030.0122 3917.8918 5676.6691 6735.9787 12902.7829 8511.0052 263773.0331 8322.3146 55593.9529 10633.8341 21744.9014 21744.9014 3085.2001 22142.5577 7277.1589 9526.8506 11289.3921 4366.4823 4213.0637 5737.6282 13384.2886 10075.0499 35909.7499 58392.5647 16018.6733 8346.0386 35232.811 10989.5522 26601.1103 11253.2827 161785006 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 31732.3836 4342370.4263 15087.0573 27399.0716 52054.4818 22630.7116 19102.2123 17936.5347 7991.8498 42481.7599 23625.4723 21662.6452 455478.4268 16853.8761 58820.0609 13401.6995 13456.523 13456.523 13084.9569 28626.7847 26544.3514 18975.9774 25504.6114 85106.4676 10468.728 15499.2907 27351.0567 31717.0641 81501.6162 56516.699 26728.7406 11777.5213 16170.2508 19171.4012 14783.6992 36099.1264 126952478 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 120640.5007 9375.1467 4453.6646 2705.3653 74160.8187 4785.9705 3298.3848 3298.3848 3766.9175 9808.8825 7967.8566 2155.9692 29610039 pme Carbon Cycling Carbon degradation Pectin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 28293.1138 77381.5964 15625.4458 150364.0038 5654.7038 85755.6648 16242.1746 15977.6999 19054.2435 14675.3666 273141.5919 25180.7911 22376.3023 29310.4221 13393.9475 13393.9475 9955.1314 35963.8856 9332.5986 23059.2408 16275.0114 53642.5008 8199.148 15149.9509 24107.1835 14618.3423 115958.2271 300785.9904 29220.0474 23827.583 88315.244 20516.2362 13896.1138 8511.4694 350526390 mer Metal Homeostasis Mercury Detoxification Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 32793.3291 24588.9202 18166.6872 29376.495 9180.4369 41220.6067 17164.658 26258.086 42729.2134 19792.7907 17149.1262 604761.8483 19848.8995 32452.6611 28808.3674 24933.1683 24933.1683 18110.9277 57925.8803 29987.9905 22918.382 52882.8918 94022.7806 13209.7124 15031.5665 30783.2318 15972.6373 71730.1147 41089.3194 36406.6098 16954.2552 20103.1796 24813.3027 15100.8746 20218.5683 302336462 ppx Phosphorus Polyphosphate degradation NA Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 4561.159 4268.6295 5149.7204 7581.0313 3693.3805 226347140 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9653.5995 15378.8113 6581.3279 4997.4169 10788.1044 5134.9686 6980.2233 19318.2863 112525.2793 79077.2097 20884.6447 6689.5392 20524.7297 12387.5804 12387.5804 8521.2324 13821.8233 25072.4424 10390.5104 49463.9964 8151.2013 4711.7146 8647.6426 13104.1676 34401.1076 24789.8191 11818.7763 11836.7296 6185.2645 6317.4237 11260.9477 4790.6458 12484.4639 422314349 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15212.5625 5316.1528 20034.7 3246.1532 4862.543 16037.1611 11355.4731 12259.663 6758.5506 78270.7914 8705.8444 244665.1091 6147.3112 10784.9747 10784.9747 6052.2249 10642.8477 16541.2455 8073.701 11309.8618 11076.9511 5846.4754 7854.5799 14329.1877 29459.9051 17633.3669 14546.8395 16936.7494 13872.7813 8437.2563 9741.4494 3796.7647 17200.9153 229323920 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 11351.5181 10817.3907 33350.4544 6002.3329 4227.2886 4046.7182 4194.4814 3977.9972 8820.0445 7261.5889 106010.15065 6288.3737 11376.8627 9952.5689 6009.5085 6009.5085 18096.2713 28275.1574 8218.0087 6738.1599 8584.3313 8589.9931 43917.0931 10639.3375 10972.9976 4756.0094 15648.1185 9303.3721 14714.9127 17084.5728 7873.8486 3372.5001 8027.3196 21111346 pcag Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 5555.6718 8902.1967 7605.4344 9144.4604 4105.8317 4037.8764 5834.767 2565.8379 4112.7596 4702.0369 4448.9202 3600.94 3600.94 4345.2765 2519.4225 3164.8725 8614.9229 2763.3569 5913.1213 5685.9827 2495.6023 2705.3331 2498.8344 2286.9445 4671.1084 239910435 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 28160.1023 16751.4056 21468.3576 28417.2804 35254.7775 8251.2717 6646.5061 22369.6348 36112.9973 18106.1113 458956.6841 23719.1913 15667.2311 13987.7925 126294.7785 126294.7785 7423.6547 30633.827 19209.1392 31032.7858 109952.3342 16194.6456 13413.5238 12470.1004 31621.0439 14442.2601 37102.769 19211.3355 26369.3046 22710.1593 14950.5405 32428.0456 35477.8956 38712.788 222436867 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 3789.3978 9605.5074 12091.676 4287.3613 15470.7671 4563.3009 109931.9798 4371.6465 5233.154 4169.8078 4169.8078 15039.61 3328.7138 2773.931 6364.6352 4650.3093 8697.8458 5767.8075 12486.912 357387740 cellobiase Carbon Cycling Carbon degradation Cellulose Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 5555.7641 12548.1827 7166.3991 4636.2075 13058.6704 3152.7486 2645.5963 3824.2896 4155.7573 4339.9144 136264.6234 13508.087 9910.893 4577.3733 4577.3733 16284.8515 14881.6526 6412.1951 53128.7512 8143.9561 4221.3555 4420.7954 4676.0622 10449.45 3333.3907 11670.223 5321.801 7363.3313 3669.6318 21660.9328 4339.9801 8765.9709 5876.535 340527022 RgaE Carbon Cycling Carbon degradation Pectin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 9389.7773 6810.5437 16213.6754 6874.8327 15818.5751 7821.3664 10888.6198 4999.2687 10543.5257 10792.5626 10736.6093 228919.6964 16544.6138 13188.9114 13089.1906 10697.8805 10697.8805 11352.9216 19731.1431 15749.5698 100333.0382 14484.6094 9664.3847 6290.3039 6620.2155 40149.8398 5923.9343 19184.1032 6745.4323 14425.1151 6990.1086 8475.1967 10776.6371 8802.4529 53596.7714 70731217 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 56025.4266 49018.64745 57097.76615 7067.582 20496.0219 67003.03565 28048.3334 31676.65195 23128.96855 628868.5895 18883.5544 61697.57695 24182.8891 46130.13555 61073.3028 34287.84035 20694.8517 18013.7944 60042.41315 31178.84895 85760.01865 34743.9548 64609.47815 20273.4439 46238.51425 17038.2526 167628475 terc Metal Homeostasis Tellurium Detoxification Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 10053.0633 7344.6305 5614.6479 16237.2442 6547.6972 12908.787 7233.6792 52226.3433 10787.0952 10759.8557 174258.3337 50812.1173 12508.5964 24322.3512 8463.5597 8463.5597 7962.0832 24161.9456 10839.393 17628.3662 37169.3688 17281.5967 44540.087 7532.871 16495.063 6492.1872 27408.7455 19766.9069 17644.5396 192664.0728 10033.9732 9792.3195 22654.0838 23957.6025 346644335 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11702.1762 4349.7569 8239.3402 15095.1118 4222.5397 3353.4112 21326.0296 7841.5944 3727.0874 66725.2643 8119.6726 4297.3348 10692.6762 10692.6762 4127.2667 10713.9842 8307.1067 4948.4653 5488.685 11475.2226 4524.1641 7665.6437 6400.4575 3040.5742 13538.378 54648.0593 11173.9624 2955.3998 7282.3805 9585.4262 3592.2037 319796517 terc Metal Homeostasis Tellurium Detoxification Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 27963.3401 104714.7689 35493.6387 29972.1811 12582.2261 6566.814 45642.9753 52542.6563 68003.4034 101428.5822 42908.9233 431856.4553 169016.4841 28936.7827 48188.8293 100368.1124 100368.1124 33438.7874 55295.9202 17390.5124 27279.7262 86804.6592 30815.2448 113792.2503 37806.5194 52298.0729 53533.8357 83802.6409 34530.4864 34395.6946 8541.5919 37882.7697 36672.2936 23010.746 79482.1979 311104994 catechol Organic Remediation Aromatics Other aromatics Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 7861.6461 8625.4425 3604.4898 2867.5663 4864.971 4568.2923 6895.185 3539.3071 111904.0749 6939.7517 9183.7162 9175.3698 2507.9385 2507.9385 4564.5658 11595.9377 6338.7395 4849.4153 10475.9391 9120.2475 2578.1154 4295.714 10075.3265 2987.72 11359.8921 18995.5295 9000.9001 3662.8722 4676.2557 5961.3057 2986.5571 9339.4199 334091989 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 32330.0462 15000.3933 17941.4873 13512.3632 10135.018 14993.8491 17814.0221 6935.9732 17553.5759 35359.5635 49368.8917 322032.6127 23738.512 25169.0152 60989.5061 32229.4611 32229.4611 18253.9455 51477.6169 15582.108 57884.4103 45369.0455 114859.6248 12613.5527 18989.9915 22703.1216 16439.6549 99911.7494 49420.7537 29733.4271 12844.2673 43400.9135 76422.7217 20347.8865 59380.9598 85069066 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4042.766 8260.7845 2137.7511 2359.2516 3923.4722 4073.0298 6768.6233 4901.4401 3884.9255 2636.9101 2636.9101 5766.0403 5492.1079 9907.7931 7137.7637 5664.4527 7631.4474 4583.0809 6657.5981 29039.9414 12198.7836 4859.2301 9518.1415 5287.5182 5234.1473 5843.3985 2703.1048 9280.4711 297151160 amyA Carbon Cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 12392.2731 6821.8465 55632.4126 4279.7266 4708.9096 14044.9135 66017.1614 6739.2626 36743.9728 59869.7817 59869.7817 4353.166 41843.9132 7813.534 5376.4403 57773.5806 15834.6137 10252.4386 7623.3403 8513.3639 21261.4768 23094.7101 186703.6945 3289.8983 7994.9735 14427.8904 10841.1858 15971.4346 71383816 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 15729.3476 31230.9857 5554.8494 31584.0639 16120.6449 5051.8451 4466.5465 3568.6002 14673.2894 46230.5202 7475.6858 138897.9738 10662.2862 9806.5988 8781.8192 9309.7653 9309.7653 8407.0512 13749.7324 10072.6141 14714.2838 12868.8966 9255.2688 4279.4261 7756.179 23222.0279 5381.0456 40868.3237 4675.5074 9325.1479 35762.0943 11463.6407 31807.2486 33261.9658 16938.4986 359833933 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 6607.8023 6216.8419 5455.2339 3938.8544 5139.7911 88146.4772 3905.8634 105908.7512 6734.7034 4246.7484 4625.4481 4591.0785 4591.0785 3097.3722 7246.0802 3972.0068 7739.1317 9041.8629 5437.8663 3514.4321 3518.954 7228.8222 4779.5365 10004.5289 5467.6115 3590.6843 6891.4206 4899.5958 5203.5902 15316.8314 357393893 endoglucanase Carbon Cycling Carbon degradation Cellulose Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 18561.6295 15184.1032 9817.6109 12334.3255 10737.0373 10431.5444 9582.183 4885.4358 14939.4535 13981.1801 23617.2923 328183.1726 22989.1722 14958.1618 10031.2071 12349.5679 12349.5679 11198.7516 19558.5002 14019.8492 16793.9033 72286.7324 20242.0554 7573.086 16271.9383 16188.6764 10489.8077 26326.3154 16866.8626 15312.7455 6384.0514 9431.213 10691.8734 6954.8681 20867.0094 347588187 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 4657.8968 3555.5352 119863768 nosz Nitrogen Denitrification NA Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 65624.1131 571101.4044 69080.6313 22926.2507 7609.1878 19529.2087 24327.7931 78854.1844 87576.8954 27381.3719 81297.6513 472821.9341 36589.1337 56555.8203 22881.9825 52050.8838 52050.8838 30328.5196 48944.1378 31322.5865 82568.5242 44343.72 132551.7891 53576.5101 82021.9776 38487.6224 50647.425 91764.3089 87270.2397 54874.0148 49826.4644 38625.7508 52950.6313 42904.4083 66823.2996 115345827 phytase Phosphorus Phytic acid hydrolysis NA Yersinia intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 5517.6574 4469.7665 2336.1183 5955.5621 6707.191 83311.6083 5229.2996 4710.8952 4398.7881 4398.7881 12158.8574 4994.8491 4604.3654 37636.5156 4235.97 112859.7281 5119.3508 6216.7272 2506.8431 13743.6323 6099.4387 9970.9387 2591.4271 5064.4153 5648.4013 4375.5203 6152.6066 327372658 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 3752.9023 13162.6612 3917.9785 14262.6428 3102.4853 3102.4853 14564.4998 2413.0241 5908.0266 3664.0179 3231.6402 3158.7959 13217.3759 292818365 one_ring_12diox Organic Remediation Aromatics Other aromatics Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 73512.1083 6049.9341 48653.7943 1175740.9741 98166.4668 58124.8541 51064.4011 9391.2763 45464.1082 75373.166 31480.1838 1599535.8569 102872.6541 90059.5525 471284.45 45549.5416 45549.5416 47865.5786 69692.6184 69402.2737 15335.728 99186.5768 81439.3876 22803.3958 55573.0577 152150.7686 51844.8817 166997.5412 134206.8521 137732.2071 39258.3691 44470.368 65467.5662 23371.2773 22453.8372 170944233 nitrate_reductase Nitrogen N Assimilation NA Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 11192.9406 11789.7904 15649.7297 12286.385 6809.1846 6058.5182 6411.3901 8524.5832 11382.0017 7474.1485 243302.946 20268.1178 19214.7005 11859.9917 6581.0344 6581.0344 5788.7852 17120.828 18154.765 12452.0655 11996.2537 31798.0871 5545.9694 11669.2425 11232.0281 6648.1099 45426.2205 11655.4677 18775.5686 5783.6196 9046.8064 10928.8012 5335.074 13007.8911 188532137 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. PA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 6063.3922 9071.3275 5106.9699 4725.9988 2189.1282 6370.7355 3771.9677 2726.7398 10522.3865 5380.0944 5498.1039 5498.1039 18200.8745 15040.07 5890.9264 8959.9467 5602.1791 7755.9117 2759.4733 3405.968 11867.392 24997.009 14830.0148 8585.947 8333.4928 4109.7481 6968.6621 5624.1274 3729.4485 27237.7154 162568541 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6127.3462 25952.3538 4632.2203 18136.454 12394.9357 5968.445 6437.6252 11158.6106 101189.3619 15956.0772 9246.9892 9246.9892 8469.962 6541.5304 4745.525 7831.2485 4779.1831 10399.1697 2863.4872 3088.4884 16949.039 3880.8182 8389.9958 7016.4917 9175.3528 5401.529 6675.348 14787.5534 15545.9691 5183.1877 18160775 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 20669.2244 25142.667 6154.9349 8385.9993 7450.6181 9520.6296 15935.0459 9719.0983 12213.049 18461.1242 19237.5855 287743.3038 18309.6682 15154.6678 27499.4555 27330.957 27330.957 23431.7082 37915.8285 15041.9783 50089.4658 21776.7996 13489.4287 15104.3543 40460.7858 29247.2101 12241.2248 38158.2158 22752.3464 86380.1233 8756.4433 39096.2741 15674.1865 89471.9195 15434.7817 353209791 nosz Nitrogen Denitrification NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 25159.322 13123.2288 26536.7897 21644.7277 9737.0142 12033.6979 9205.5562 8224.2703 22007.7226 17019.9204 7808.5001 205169.623 18804.8091 19557.7647 14214.7449 8816.4605 8816.4605 10916.6544 29346.2004 18089.9652 16744.0042 23922.3921 22870.8829 10324.9627 38323.6828 25382.511 17700.5869 39930.2007 20017.5694 24343.0569 11688.1334 11870.1956 12486.5932 10020.413 31974.0531 358006079 ppx Phosphorus Polyphosphate degradation NA Agrobacterium tumefaciens 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 399489.6705 153441.8835 559936.1425 262819.2516 401692.1755 209981.5523 629041.5012 372060.0103 250269.7155 383321.5966 366816.1461 240561.0644 7371781.2154 799098.0413 343184.442 458349.9262 325763.5602 325763.5602 222459.843 308654.7935 202988.0338 395635.1843 399636.6196 725325.5979 263443.0715 197702.8358 389303.4809 225867.4435 671054.2302 242892.5466 372140.0521 394516.9368 239353.6284 292319.0704 180886.6239 427416.0709 358635354 napa Nitrogen Dissimilatory N reduction NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5930.9894 5430.886 7425.118 5630.1894 11713.8812 110626.8425 7522.387 6028.3001 2110.5248 2110.5248 5770.0621 11286.6609 7166.7995 6006.9534 8405.0981 11099.5088 2853.5392 5490.3599 9873.6705 3590.0867 21430.5592 10457.6447 10215.8232 4559.4242 7360.2954 6216.5726 10036.5571 8699.2345 229489177 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 28658.6898 7866.3017 9486.5392 5330.6079 5152.1152 7930.103 3157.3443 12187.5585 11077.8956 9828.5033 211955.5411 12880.9446 9208.1941 21033.4232 12544.6733 12544.6733 36797.8836 9389.47 13207.9396 11818.4961 22478.7634 16074.8027 5738.1966 6397.9201 10864.3519 4529.6871 21268.4053 9288.1628 13075.1838 4934.1288 10521.9663 17250.6274 6317.8077 14381.4166 94555060 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 19214.0943 16539.8964 30299.1463 3329.2539 7508.8197 7046.0795 6067.5123 91768.2796 8377.3872 5868.0009 4684.2033 10404.7918 10404.7918 39840.1154 14046 7242.8314 33089.0433 17385.0847 5912.0353 6844.1149 4613.7697 12482.3194 7078.192 19644.7353 26736.3497 14773.2978 4504.4177 10907.3754 6811.1412 6368.2161 8333.7536 254425158 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8559.4161 5778.0536 5781.8816 8253.8198 8266.8313 6031.1073 3514.1954 7273.6868 6950.7088 5266.6382 220993.8043 8437.6327 5428.8996 6939.0485 2934.265 2934.265 5922.8074 9907.6354 12773.7088 9363.4253 11233.8952 12695.6071 6456.4956 4591.5222 10177.6958 4907.373 16104.8891 7658.609 11638.4674 4923.9836 6285.3838 5349.7594 5603.4227 13708.8022 345856912 phn Organic Remediation Herbicides related compound NA Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 6008.0208 7758.9695 2433.0638 3476.3006 2198.4498 7459.2276 8025.2756 2665.7386 109700.9178 61018.6312 7438.1456 60828.5821 60828.5821 4895.7089 9010.7209 6275.6825 5426.6593 7457.9672 6982.8217 2396.9598 3229.9084 7383.243 3090.1758 19502.7276 16796.2654 7701.9923 3275.39 10403.1827 12602.1497 4114.1299 9269.4373 121713048 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8312.0159 8120.9274 16675.1777 45549.6724 6911.692 2879.447 5719.6761 4744.9884 375054757 amyA Carbon Cycling Carbon degradation Starch Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4421.2641 22484.1481 4311.6597 4589.5695 2305.2615 5648.0006 8079.5838 3515.2747 106180.6256 3861.7579 4024.3707 9362.2376 4238.2689 4238.2689 7144.253 11051.6169 7651.3911 12252.8192 10563.3781 4848.1711 2972.1293 3778.3395 13769.1381 2483.0893 14461.7119 12695.0406 10057.0631 4777.3697 5311.1774 6368.2414 2316.1962 12876.0859 154508610 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 49634.1234 11042.6595 23569.1639 32611.1516 11372.6485 20641.419 30939.0482 36505.9116 72090.8067 42801.7074 22956.8391 347669.2403 36290.53 27799.2248 35929.6236 31800.7584 31800.7584 14935.8002 49500.4382 36826.9713 24318.3643 62704.1451 156753.5231 16902.4279 17199.6883 38792.9163 31773.6807 68084.9258 30449.3601 32094.4909 35722.163 22424.4387 32622.7416 20566.3313 16018.8007 374291887 ppk Phosphorus Polyphosphate synthesis NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 31770.8247 86816.4746 6460.0855 7779.1502 7962.6035 6520.2255 19584.8882 50929.6741 23488.2973 1017731.5703 57326.9415 9863.6381 40304.2149 12607.4797 12607.4797 23084.2322 33518.6321 20197.3288 22060.202 129929.7476 14228.3711 12659.439 17306.1615 19432.066 22182.3751 32002.1779 143957.021 36861.0486 13029.1543 17457.1824 24789.9454 19819.3707 59723.6917 295412377 urec Nitrogen Ammonification NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 29722.3996 42991.0959 7576.8885 6333.9944 29160.7154 9049.3984 20905.5099 19707.5474 759628.0246 13079.7131 20053.2631 23558.7374 9826.5101 9826.5101 9105.3348 26462.6533 15401.8758 18909.9532 40509.605 9912.9761 9531.9916 17331.7741 14113.9876 15761.9072 50881.462 21363.1356 24809.05 8490.1696 26243.8012 74935.4759 11513.662 21300.087 154248300 TIM Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 4150.7663 3678.2344 6126.7086 5058.6106 5581.5193 4286.4545 103760.0898 7170.4328 9876.3306 5418.5635 4425.4187 4425.4187 4362.9641 9937.9653 4314.256 4570.2012 7450.5138 2199.8099 106654.3673 41993.0385 107429.5713 15675.4736 10081.0596 11630.7418 2229.2505 4524.3795 22335.8804 4023.5881 58694.1126 375095435 bphF1 Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 18467.7163 7957.2573 32906.2998 45005.3969 10766.819 68736.984 36013.5911 12779.1411 13261.1472 18762.9096 23105.9305 2264950.6445 15941.6315 16107.0641 27221.9075 13010.6574 13010.6574 10199.48 35535.6492 36725.7355 31810.7038 25981.1587 17949.7988 10345.9828 15898.8691 28148.1282 11646.5534 34882.8244 293324.2002 29663.1202 8591.1378 24154.4087 19246.428 8078.752 56426.5973 345570385 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobotrys oligospora ATCC 24927 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia;species:Arthrobotrys oligospora; 13331.7364 7937.9176 16575.4363 16943.1483 11099.4406 9675.0359 10560.5014 7397.6536 9054.4835 13562.4612 11120.3658 254125.4785 16421.5732 27297.3267 87567.1863 16210.6908 16210.6908 10611.5967 20348.9632 12104.6597 80605.953 13253.5746 11759.212 6159.8725 8951.1075 29800.8523 11557.7975 28346.8447 19856.3207 25073.6283 98937.3678 13763.3917 11303.5869 5533.8703 15800.7065 225872235 RgaE Carbon Cycling Carbon degradation Pectin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 28852.7045 22151.2823 18820.6947 31187.771 17593.1418 16983.1087 50476.3053 18849.0772 18240.816 17920.0446 18732.5688 364446.7093 24451.2837 23170.5367 257141.1633 29858.9112 29858.9112 8710.718 32779.468 24031.8474 295638.2853 38631.6938 16268.3522 13827.7765 15652.5087 29591.8282 21667.4915 48299.1025 34220.4731 29312.1877 15545.7513 31474.5157 22725.1425 13105.3606 27378.8915 116198985 rgl Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10408.0481 5333.3575 7499.5007 11946.1846 5833.4215 10125.7524 8020.3978 4568.2859 3418.345 12383.136 12383.136 27365.2323 23193.7375 5105.2127 3484.775 3246.2444 27027.9478 3749.9619 8933.6729 3872.8911 5060.9063 2657.0242 3865.9962 101358.0428 3246.7404 109454940 soxY Sulfur Sulfur Oxidation NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 5880.6912 8645.5355 5317.1423 4856.3818 3390.5941 6551.9705 10882.3816 3133.2485 116383.7986 6664.5969 8024.1256 2256.9153 2256.9153 4559.1984 12143.1995 12949.4594 7457.2819 7363.8772 10087.6233 3705.9166 4707.0461 11675.4315 5063.3593 15648.3274 7666.0044 12756.3827 4877.1033 6188.5057 5257.0262 3966.7451 8197.9133 197776540 xyla Carbon Cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 1164221.1335 17201.672 111489.9135 330884.1065 119957.9813 45860.5748 171319.5986 181494.1744 156426.2672 224471.9547 264716.809 247226.5029 2363069.8776 146442.3636 213070.5997 338525.5805 528114.2584 528114.2584 135424.4525 261832.2797 91255.5727 530472.4201 438697.3593 213409.1593 109034.5996 138924.0124 298033.9161 123684.5143 449996.8778 319928.2239 373114.5649 92347.4049 189563.0212 340151.1323 194703.0959 445319.042 46850268 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5193.5068 5449.5048 5634.9601 4192.7228 16575.9086 4323.5563 97628.7282 4527.2446 5497.3734 3596.6576 7642.9016 6322.105 6253.8916 5899.6122 15292.2494 4758.9389 3110.3637 6248.0083 3777.9351 15011.9311 9773.2553 7984.7972 2979.8631 4430.9422 8614.5095 3747.5512 224823770 terc Metal Homeostasis Tellurium Detoxification Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 9084.0405 4653.2372 11745.1748 23909.9779 3186.5866 4018.7674 4153.7383 110201.3351 11361.8811 4328.2315 4612.7388 4612.7388 4732.1362 6429.761 4483.0655 7219.3445 7016.6134 6550.3307 3882.9952 4303.3388 8354.9979 4478.0093 16344.6661 5935.0768 8741.6323 2975.4858 4353.5444 9022.5142 4625.2089 11197.254 149811120 mer Metal Homeostasis Mercury Detoxification Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8648.3263 13249.9575 81411.093 9254.5635 14304.5927 6208.6558 2001.6636 6337.2568 7444.3441 3766.0102 140977.6606 5150.1639 7500.5089 11356.8442 5293.2916 5293.2916 68183.0405 8597.2414 4286.5085 6473.613 7704.2852 9710.53 4244.1544 5030.5485 9751.0884 4508.6872 14570.237 7461.5293 76200.9691 4494.1899 5938.8131 8668.0883 3986.8377 6883.6272 229816659 arsc Metal Homeostasis Arsenic Detoxification Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 5233.1978 7018.9262 3209.9055 3259.8475 3516.2671 7218.469 2553.8343 53426.1022 4064.5391 9225.0804 6502.0547 3196.5854 3196.5854 2628.3454 6347.9146 8470.7269 3670.5893 18548.4406 11584.0649 2117.4874 8835.0133 6887.7618 31466.7704 8797.4387 5869.681 7865.9681 2392.0109 5121.1244 3458.0499 2648.5856 4502.6985 154310781 cutinase Carbon Cycling Carbon degradation Cutin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 258857.1753 23129.5646 50135.6328 289668.9179 4389.5295 17181.9443 9784.5473 20002.764 65525.7111 28663.4088 315060.9047 27530.4578 28857.3244 29000.3119 54407.051 54407.051 13244.8849 28901.8771 31199.2522 23628.3104 24368.9067 17345.8207 6835.2608 13423.1609 28108.2568 19095.0302 41558.515 29413.3099 38021.0161 11253.1851 12846.1081 25289.6056 9170.2343 14938.1476 307770484 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 8295.778 7531.8405 4093.3989 3966.9053 3598.4434 3530.3702 5344.1799 106833.6963 6675.5842 5020.3035 2491.1203 2491.1203 3818.0144 10758.6523 5540.264 16258.6498 6484.8792 5936.6486 3380.9364 3931.6459 11970.4582 3782.4261 25579.1495 8986.0877 8956.7443 3451.3556 4770.9841 7511.25 3662.9147 7970.6671 220913345 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 141136.051 533599.4469 325251.0184 132316.4147 44846.9836 137521.4365 59764.1201 28920.0271 58017.5375 56255.2224 105728.6921 687162.2948 60007.5521 267250.8144 203691.2569 204303.3741 204303.3741 35876.3271 104370.5003 49133.4671 62097.3091 87360.1484 104988.357 75812.3253 61900.136 70971.0159 29130.8391 104009.2553 86577.1425 117816.8055 257357.9326 56056.693 62441.2286 34578.9882 327796.1656 237785707 terc Metal Homeostasis Tellurium Detoxification Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 6124.4655 5833.7798 11862.8535 5080.8609 3425.3418 2640.0099 5967.1122 7425.0353 3781.7344 99064.039 7834.8401 6535.3151 5379.18 6387.7263 6387.7263 4729.0508 12298.5511 10649.9858 6539.2703 7056.1483 7926.6804 4137.9442 4468.9684 11211.4314 4274.7971 15624.2387 10875.8228 13102.7527 4713.265 5053.5123 6128.3017 5082.9504 12730.6376 86609253 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 360512.136 14049.5204 110599.4716 585311.1271 2339806.7006 68275.0533 144914.6413 214350.1816 116780.1055 147689.2959 231160.4564 193858.9769 4367090.1887 300081.2611 409736.7368 598049.5413 202308.4122 202308.4122 162516.0318 298158.7611 166783.8369 357204.3505 252904.0399 207378.6956 109322.1825 120180.0915 187832.0346 162162.5961 799853.0678 310226.2741 358085.9688 401898.4054 193565.1702 223863.3006 173723.3728 389424.4462 190891477 narb Nitrogen Assimilatory N reduction NA Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 23922.4196 27139.0041 23836.569 608867.5854 18145.8076 16633.6095 16655.708 5067.9341 18049.8437 19597.8222 19532.5263 921944.564 26191.6791 21409.3024 58766.5928 19468.3406 19468.3406 20014.2992 38263.5793 24411.0163 19103.326 31087.4404 33672.8404 18078.4556 26912.3394 36976.3986 21416.7637 59152.5936 21813.5043 37119.11 22697.9324 20445.3575 58230.2494 88130.787 44583.4388 121605481 arsc Metal Homeostasis Arsenic Detoxification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 216953.6727 62691.081 877628.6969 28776.2205 148772.7859 13863.7012 109379.7031 53570.5134 50185.4202 59652.879 92174.6126 108003.1659 1272865.4788 87019.4191 155405.0245 112742.124 103217.6645 103217.6645 95014.6367 138241.967 91272.454 233287.1281 66700.5819 88463.7831 71936.0707 59637.7258 125217.0185 113607.4871 207214.6183 163710.9567 104909.8104 61881.3172 79834.2959 63040.3719 77955.3231 66459.9442 29606454 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 6171.7036 25623.4689 11867.4764 2474.2464 3890.7405 2405.133 5601.4754 5176.7031 2689.4164 59800.2966 7850.1862 6150.5785 3636.7888 3636.7888 14567.8514 11017.9467 13093.1654 7056.3662 5744.7446 4690.1444 45736.2054 5252.1226 11699.098 10760.7368 15544.7867 4190.5749 11546.4483 7496.4377 6329.5643 68563.5662 7592889 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium ORII-7 superkingdom:Bacteria;phylum:Proteobacteria; 14345.3541 5056.304 2198.8784 3283.1498 6656.401 3338.0223 64837.9992 8057.9863 6299.8208 5812.361 5254.2366 5254.2366 7653.2566 7786.5928 6735.5245 5213.9112 8119.9508 12355.0176 4408.5576 5352.6475 5289.0485 3803.938 7912.5866 5805.5181 2808.7953 6503.9762 5483.3327 2353.3219 9756.0855 288867669 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 4927.5701 3452.9666 3000.8836 3469.3408 3471.0366 6086.4614 4575.1689 70240.8982 4445.3033 5554.4015 4285.8969 4285.8969 4009.2093 12154.954 10319.2223 85514.8961 7045.3117 7757.4054 6505.822 5906.4593 4251.5802 47431.3707 7211.9372 8647.4149 4264.1445 7249.7101 3692.1575 7057.4343 172072012 terc Metal Homeostasis Tellurium Detoxification Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 43874.4141 11682.7065 294808.2446 67886.3302 190866.2064 27039.2956 212884.0371 49814.1974 20558.5822 26969.8668 87841.7899 33506.6551 1975644.753 30327.0439 49842.7161 66690.6187 65858.8948 65858.8948 52404.6661 146127.9471 62477.6105 64108.2352 125773.0577 60977.6735 34474.5357 49226.0458 58259.4482 53977.7527 92700.797 65809.5798 80986.9696 25473.895 40708.9651 38632.2646 22211.2889 81061.7182 156857707 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 16960.772 14403.0123 6760.1746 11923.5852 11570.461 7665.9333 3669.5164 9017.0698 11657.9414 4499.685 192919.3309 7550.8052 9754.3944 5775.7908 5775.7908 7723.1482 17900.0875 11430.48 63534.4777 17364.9767 15415.4169 4982.2951 5841.226 13153.316 7391.5918 26673.3327 11927.744 10550.5236 8612.7602 8797.5427 9430.382 5864.3462 13831.1458 335339141 xylanase Carbon Cycling Carbon degradation Hemicellulose Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 4997.8772 5474.4063 6122.2366 15147.0569 8851.0476 2102.4998 3730.7498 3850.1686 7995.7108 8645.0939 4802.1269 3660.225 4026.0615 5187.3996 3692.4622 5095.3416 14888.7169 4350.2869 5339.247 4678.468 46199354 SoxB Sulfur Sulfur Oxidation NA Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 119963.9986 33549.0732 9671.607 6541.6842 13522.45 48593.446 59155.2356 9271.2243 10523.7835 49354.2784 31327.0017 183133.0607 525848.6244 63233.5535 31666.0748 49355.8907 49355.8907 9493.7396 36206.9884 20578.9293 16077.6697 21887.4036 74772.2723 14865.0835 18982.1336 17696.4455 9400.3512 24310.5111 12497.9261 84671.355 14702.2494 16367.2501 18678.438 22967.4538 16585.2169 408481560 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas sp. R81 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14138.7123 2866.2589 19784.7328 11768.7221 13232.6833 7135.0814 5813.4086 62564.9871 5258.6878 3138.9484 256370939 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 64093.2513 10815.4169 33678.9948 122895.9315 29004.9149 52845.8461 96787.1777 34441.9793 58009.3692 36467.9117 91709.4583 38207.2986 367585.504 28641.4658 67175.566 87974.6522 18409.7951 18409.7951 20407.1141 45733.3376 18547.283 36751.4566 40946.2566 49278.605 25429.6869 31743.9925 76994.4093 39403.1792 100205.3327 72298.3095 66130.7479 26523.5215 73772.8055 32589.9742 61416.5973 84070.9283 87286596 glucoamylase Carbon Cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 74547.2002 70093.4179 133079.1695 3641108.3434 358269.4148 602875.8186 241624.3885 32544.7966 75677.1834 93284.4386 56175.475 1267935.1556 174077.9609 140708.9034 111116.2972 83145.2644 83145.2644 103818.029 504114.4518 152341.2085 1005463.1791 145339.8126 44940.9458 51965.0964 89100.2821 338242.8218 102447.2846 427176.8402 210560.7657 259731.7816 404545.2939 102421.7699 169696.6108 57241.3543 386871.0486 190010206 linb Organic Remediation Pesticides related compound NA Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 12924.7438 5076.0962 6641.6022 13410.1812 9857.3753 6732.8958 395111.8354 10252.8825 13522.8648 79670.9375 202066.9124 14962.4996 14661.0257 10200.0172 11400.7577 11400.7577 8415.9791 23025.4195 21017.2792 11524.361 11709.463 13556.7533 28430.3064 8551.8087 19589.2947 71851.7643 28726.2634 13570.3669 15122.4784 6503.7271 10684.8609 11280.6998 10051.8117 82917.5278 255084493 nitrate_reductase Nitrogen N Assimilation NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 14487.4674 7127.5706 9353.6898 13359.8368 17267.9302 7315.625 8479.1522 13458.0136 19610.5234 186722.7644 11849.3511 11566.6894 10109.6511 46979.6767 46979.6767 6391.7464 19541.5091 9506.1 9477.9598 27216.0715 21280.7036 15793.9486 6495.8365 20503.0234 9315.3458 44355.7094 20966.3773 16864.2459 9623.0765 9503.1436 6561.6218 14163.0941 15411.5923 223895391 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 24519.9843 25072.6055 15600.9822 47773.4907 20102.7971 7002.2479 43528.8122 19120.5716 12583.7178 41311.9985 33295.003 13851.0263 724723.5088 33312.5258 24824.89 21095.3019 13072.5021 13072.5021 18245.4789 54636.2606 34302.1985 47744.7951 33708.2248 27262.8571 11028.0189 16247.1761 40672.0088 14698.391 53055.6717 27053.6279 38429.9267 16754.2275 17784.5604 22899.7346 12928.4297 22090.8871 221168209 pcpe Organic Remediation Herbicides related compound NA Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8119.3489 102924.5722 10286.8246 5139.3957 4061.66 3396.4514 8648.4904 6389.6235 12160.2882 81483.1928 8418.3711 9420.0428 6700.8084 14042.4815 14042.4815 3958.224 15581.2556 6197.8273 8483.9122 5502.8366 4645.2172 23639.4095 5809.5631 10622.3983 6293.2717 19966.9959 59053.0634 29992.0375 8728.3203 7983.2071 18118.8167 12325.5423 29611066 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 14907.4227 25365.4947 11686.5097 12810.1851 8454.2763 12190.9208 3241.9423 14019.6114 18382.6116 9648.5199 212930.3883 13845.0956 15023.1759 10174.2424 16322.7046 16322.7046 7494.9588 11631.5724 8833.339 11821.4127 13498.2838 11227.9559 6151.3986 7748.4419 23089.4525 5952.762 11986.1165 15364.7311 18375.341 7340.6426 27029.9659 16646.3619 7365.1345 24032.1334 300075672 b_lactamase Virulence Antibiotic resistance Degradation Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 10721.3788 7853.5465 8472.9511 3499.6268 4398.9583 2904.3748 5471.0242 8531.1244 5709.6023 126525.0395 7136.1559 8109.1253 10407.2962 4481.4903 4481.4903 6740.0865 13589.7127 13527.6984 4953.4832 8124.8276 9445.9083 4492.4242 4244.4815 9697.0541 3800.3521 17356.7939 7767.3453 11700.4652 6917.7484 5864.7836 18977.1363 4391.0814 9710.6707 148260275 PRI Carbon Cycling Carbon fixation Calvin cycle Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 15112.3304 15850.4183 12499.0128 3626.8921 2428.1597 60845.7875 4368.9322 8695.8322 2327.2004 2327.2004 4607.7105 4512.1239 6469.3002 5837.866 10009.5035 5039.6283 21999.6501 2766.8348 3877.2701 35893.3341 5616.861 333918597 bphc Organic Remediation Aromatics Polycyclic aromatics Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 7929.845 64706.1127 4615.4834 3918.4792 2322.605 8862.1629 5585.6769 309790321 cda Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 13931.8795 5649.6713 5397.4611 9972.8046 3506.5383 4635.06385 5713.2052 18137.624 158863.461 11639.2018 7420.162 6426.6823 13589.3773 13589.3773 4298.88365 30243.142 7562.5808 12275.3875 18522.1396 16626.1589 4089.40525 7038.499 10734.9705 6156.3876 33590.5733 13800.4252 15238.8557 6023.2575 11895.1099 9384.7977 4534.6749 12082.7956 3157592 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 49479.7361 9249.778 3191.0378 4094.384 109452458 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5682.2664 5704.8463 19358.2335 4355.3885 2912.7784 4159.6791 5383.7235 5642.2979 175437.4888 6673.4157 3064.8363 3064.8363 5874.5001 9357.5552 6179.3867 7781.9925 5791.3481 7501.8331 2856.7416 3289.2867 9183.0819 3286.0677 13318.9656 7562.0265 10038.3944 5072.5687 6187.9629 5173.3474 2967.8997 13704.9441 300780094 amyA Carbon Cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 9798.4287 26598.4243 9265.1 5803.285 95952.7887 6130.8157 13054.6015 43316.3308 525005.4423 6291.4014 40759.5872 25102.7554 14992.9655 14992.9655 4775.45 14241.8445 5032.3565 5142.5321 9153.9267 4439.9676 2593.179 5425.4333 11199.8659 97984.4795 14740.8552 6639.7093 11321.3693 3123.1717 5986.6224 8566.9418 7406.1059 13574.3713 158138834 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5760.6815 4431.5918 3907.4844 6135.2341 5988.7461 269095602 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 5513.4763 563477.753 3877.9927 10001.2784 73824.31 60281.8697 3749.4454 6824.1158 1984.7585 1984.7585 2778.9509 9891.9906 3837.461 4580.619 4554.4548 2283.805 5291.015 4740.5535 9666.5551 6751.1458 3643.1342 4501.4717 3011.6377 337746156 inulinase Carbon Cycling Carbon degradation Inulin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 10481.7525 8977.7493 13586.793 8310.414 6323.6104 10851.4864 9498.7214 7512.2498 11052.0255 9100.1469 221543.5265 12433.8093 21050.1795 12692.5163 8578.1328 8578.1328 7945.8587 25271.3634 16999.4565 13718.3769 15948.1213 8975.4286 5728.2845 10701.6132 22102.006 8760.7796 22044.558 13422.0015 19414.7152 19444.0703 9053.4596 13832.4602 7241.8116 18875.4637 222479022 amyA Carbon Cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 10189.931 8063.8683 7951.8178 9014.4422 7352.1752 10954.2228 3808.879 8281.9113 15811.5 5776.8381 204815.5663 6748.8165 9138.3721 9126.7552 5275.8474 5275.8474 8296.5572 29510.4757 11167.3977 9049.0937 28678.9237 16670.1573 5097.3625 17113.6002 16084.7501 5141.6633 24085.9214 19912.5399 12421.5481 6389.6373 8841.1717 8142.3808 5516.4869 204866.023 393761545 one_ring_12diox Organic Remediation Aromatics Other aromatics Alishewanella agri BL06 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 9541.7971 5359.2963 10233.7585 6655.1948 4043.4652 5530.7955 10061.6724 7919.9171 10970.0211 13127.2668 148893.8865 12524.3187 8758.834 21657.0662 9891.6167 9891.6167 4652.4712 8399.0228 8710.6062 28034.1038 9409.4611 7515.7716 14628.7989 4719.7268 13156.7933 8217.251 33505.7539 9683.9047 10908.9166 4594.0893 30196.5491 9490.4881 10979.9165 16178.6652 120326977 mer Metal Homeostasis Mercury Detoxification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 5479.1388 7867.5459 31169.9247 7871.4586 8652.365 6893.6824 3093.0535 31633.5575 31633.5575 5634.4295 3060.2994 7976.9319 4183.3316 5730.8639 5974.6085 4323.145 3334.5865 3777.8661 4777.988 302674164 endochitinase Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 39702.2374 18016.2626 111470.5139 68575.4668 42308.987 8613.1991 23441.3764 29254.6783 36511.5926 41027.1855 41732.1463 33767.7167 806060.7651 60583.6539 48240.7583 45146.4263 24477.3858 24477.3858 18447.7685 48417.8735 22160.5027 46514.3245 49750.2947 33798.1427 17430.9871 31993.0847 46125.7315 24962.71 64559.4462 32235.3065 43983.7158 16011.7984 24784.3856 31773.8456 25498.0748 41448.1564 408527732 pcpe Organic Remediation Herbicides related compound NA Streptomyces davawensis JCM 4913 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 6229.341 4797.5949 20021.9587 10457.1918 9488.1731 4343.6672 731638.6526 21500.8333 5502.7787 11154.4919 5419.8691 179886.3088 6216.0394 8901.8353 9124.5253 9457.3371 9457.3371 9902.0299 9747.1592 10488.6489 9200.0981 14570.3843 181577.7412 6123.4905 5934.0542 15611.7008 3925.2345 26536.4037 8664.4567 12535.6221 3708.2805 8310.9966 7659.3737 4718.7536 5116.4719 383330593 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 6050.4233 3720.3721 7310.4313 4120.1159 3057.478 2562.3959 383763661 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 5065.8976 4889.6605 11381.0683 15868.4167 2193.3111 2254.6286 36614.4603 4592.5496 88938.9941 4285.8155 9167.2263 8255.2874 8255.2874 3625.3474 17435.8212 3311.3082 4761.4796 5082.5079 4844.1265 2745.2024 3141.9605 6704.184 4254.2014 114101.4148 7634.9675 2682.4488 4006.9276 4506.1246 3378.3569 126738670 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 42391.0826 11805.8917 38135.0929 12677.9406 101322.3146 11734.5192 31813.0729 27260.3435 27872.8579 29199.0651 44017.9953 36041.2391 820365.0066 44067.4233 93533.2459 373495.1408 26063.3201 26063.3201 18091.025 64923.7402 31263.7358 331624.7006 36996.4217 40463.5541 22036.1497 37233.1483 33963.9299 30220.5557 93125.6292 33757.8015 50316.0837 20991.6771 36040.1236 55144.0229 23190.4864 53558.597 83574848 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 19541.6455 14198.1757 7532.6808 8873.0787 18111.9969 13493.9227 12640.4284 10094.1191 15270.3613 19136.431 15047.8424 457290.1822 32486.7355 22731.5609 13711.9979 9782.65 9782.65 14762.2873 33181.4142 21216.1452 25294.9799 36683.3431 21640.4284 10947.3526 12335.9697 23811.7338 12663.114 52649.0002 23401.2756 31430.2278 12303.2256 14869.4884 14973.2822 66703.9658 81417.9332 211905435 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5999.466 16643.0881 2135.6103 13647.4016 3499.4011 4537.0706 4842.1626 423524.1884 7620.7099 26565.4794 8597.1518 5166.772 5166.772 6465.3505 6129.1282 5356.751 4421.8899 5404.1295 12642.694 22030.74 617328.932 8574.6588 10939.2943 3871.0759 14922.0088 10859.8817 60128.2714 16601.163 255342208 pme Carbon Cycling Carbon degradation Pectin Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 9157.7329 26353.3784 2896.7264 6179.1516 4431.3235 5566.6433 10301.1121 3411.0788 124388.8516 6601.6794 7716.6478 18649.8745 18649.8745 5259.5645 21595.4457 5687.0803 7884.6954 15256.8813 3821.802 13723.8814 7916.9977 12188.6123 23948.9692 27594.0055 9068.749 2794.8901 4634.1344 15301.4219 5335.92 5435.8624 229916298 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 11628.2969 14356.2366 7607.566 5667.947 12847.2811 4747.1668 32671.5006 5973.616 5703.1715 42560.0628 424583.1528 10671.9665 7253.5527 14522.0756 6967.5381 6967.5381 11605.8558 12437.679 7286.9415 3980.854 10054.1738 4722.8527 4406.3394 13821.3543 16073.8868 3556.5652 13882.0971 16337.3493 15885.887 4602.0123 18126.2456 7981.1693 4701.8726 9395.2866 170739375 endoglucanase Carbon Cycling Carbon degradation Cellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 29511.9571 18415.2991 39581.8847 18666.3899 24577.1369 6308.3101 7195.7541 16006.6184 18269.338 13634.8648 29414.9489 18318.2865 4048382.9038 29219.0219 37926.9136 46169.081 20008.202 20008.202 20752.5846 74664.5345 23997.1067 21958.6764 36752.1284 27401.3454 34583.3272 15246.0777 48204.7786 8853.1375 83560.9469 18694.45 32649.5955 11263.7724 27846.0782 19729.4036 15594.4853 29303.5115 380772708 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 8018.1639 880075.3236 18646.07075 9342.7338 3599.09385 14386.5233 2750.684 8558.15615 8046.2577 9679.16985 9309.18015 14031.774 14991.8493 14991.8493 4688.4299 18923.7859 5833.9434 6108.4702 12345.8681 5040.8824 15216.8668 39397.29395 11922.37325 11920.5095 11973.6976 6142.61065 8716.8035 8257.42595 8495.6456 348618649 tktA Carbon Cycling Carbon fixation Calvin cycle Candidatus Glomeribacter gigasporarum BEG34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 22583.4159 29672.3541 27140.0554 5066.2012 24216.15 4202.2247 10652.1323 13767.7016 18322.0412 247807.5763 8395.536 14296.6791 15140.1401 20596.6627 20596.6627 13170.595 36938.5104 16216.4572 12772.8394 34611.8499 12530.6412 11538.2541 8774.0386 12769.0084 6962.2223 26987.3387 8882.0641 16887.863 7371.8803 16758.4253 15056.2063 9008.4671 20913.8059 149360104 amie Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 4109.7307 8644.2291 25702.9158 6532.1829 3871.3138 4441.815 3601.088 2990.729 7597.6653 2406.3925 94951.7691 6575.1594 5244.3332 11534.1385 5725.7734 5725.7734 12726.9483 6957.5857 8568.2542 3335.946 3339.6898 15193.2438 4665.8469 18282.6903 11280.6795 13441.3451 6873.5912 6018.7369 3601.0875 7500.6869 316981186 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 4464.2749 8394.1002 9106.5198 7421.7328 5872.1574 8368.4987 375147616 mannanase Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 74726.3409 8580.7321 11872.4005 30393.0771 12865.9962 23298.8736 16553.3059 20772.8176 17455.1398 41609.6669 12318.6321 401679.3061 40650.3934 107600.0054 19071.6189 26061.0748 26061.0748 9413.4101 16086.7161 19890.7863 9183.522 10570.9255 12809.8827 5187.1291 11221.1155 25996.1304 15990.3867 35165.2956 21176.8401 23352.8644 9352.5384 17951.9559 15302.1083 11360.9619 12677.5119 383650756 catechol Organic Remediation Aromatics Other aromatics Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 79644.5695 11350.9327 9758.8683 2391.0197 4519.1665 3151.9516 3151.9516 15006.446 27502.2815 14628.4516 12612.2671 3729.1603 10019.0826 9277.1302 3541.6126 6493.6686 14924.1345 25117.1488 297203243 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 8316.1849 4914.1978 12930.6237 22978.6408 8807.0583 3285.7368 4562.9697 40205.5941 4468.2675 5721.7434 3722.3574 146476.6733 9812.7636 11165.1143 21700.4309 12377.6042 12377.6042 4717.5453 8923.1557 16236.8058 12098.2904 19229.4358 8669.8442 3944.3155 7886.8483 16384.5952 5239.3616 21147.1824 18159.8428 11514.4748 5189.3016 6307.8191 5825.4291 3500.2547 6359.3847 159181310 chnd Organic Remediation Other Hydrocarbons NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9136.0282 4778.8687 7468.4788 15092.0106 3366.0091 15852.49 4572.6669 21769.3 60954.2336 4026.1102 6673.8731 10890.1415 11539.7953 11539.7953 20487.7291 14010.7832 5519.4183 11278.693 8483.534 5677.8317 4161.5213 6649.5487 9444.203 13720.8024 7561.7116 8496.7767 4848.3184 5310.2814 20258.8327 8893.9128 199652691 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11934.9219 9735.621 18939.6885 11710.4821 8203.2028 4870.7808 42473.5268 5404.5254 17216.1504 16441.74 88993.8149 5924.457 7896.9993 13189.7865 5534.9842 5534.9842 3717.1222 111949.3165 6446.5941 9184.0843 20047.3798 5698.9967 14278.4167 15338.0347 12598.3459 6939.788 19156.1141 5606.5081 34802.4765 8378.3516 19464.5947 12698.2791 7886.3387 8037.6111 333441108 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7099.7969 21869.1426 4878.1844 3820.9019 326382798 cysJ Sulfur Reduction NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 6754.3563 14222.6947 3709.4138 7970.4368 6329.1721 8382.3286 3358.2641 86750.891 6250.5762 6148.5559 8406.326 8406.326 2910.7958 40009.2833 4427.5188 12183.0311 5105.7851 6718.8559 15504.7341 6764.7342 3679.7788 313196.166 7562.3552 10496.5164 1920.1248 10727.9194 5828.7281 6017.501 9491.6073 1399947 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrococcus furiosus superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 9856.8335 4615.3289 8088.8486 3928.3437 4249.3957 73487.3603 7439.0977 2377.8292 2377.8292 12957.3344 10044.9495 5451.8316 20538.972 4249.2502 6958.056 2938.1509 2735.1614 5773.6535 2203.1032 7827.7699 6075.0377 2432.9668 3913.3436 3741.6413 3598.2212 8361.5995 94471099 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 40170.4365 19786.3305 8572.2449 43461.9716 55321.0596 18749.2508 17518.1089 21891.4489 85449.7457 28687.5592 1337120.5365 32059.351 48402.3949 51165.0916 37185.0933 37185.0933 10758.5358 48104.7475 16591.1538 41417.1088 55836.8272 19966.4287 21064.3156 24171.3061 31543.1253 36273.9321 91450.7736 32456.1537 47776.8191 12464.4642 26927.6419 29267.7782 16178.0618 9615.1458 220909235 Sir Sulfur sulfite reduction NA Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4036.0198 4095.0668 6259.6092 2450.0163 3764.1879 4750.6755 10302.7589 3332.771 104011.5216 4388.9462 6997.5607 4536.3997 3940.5866 3940.5866 4297.4598 7039.0525 5793.4664 4941.924 5985.3808 4518.7568 8017.8922 3245.3062 8834.6368 5243.8406 1825.0083 2871.4123 6174.3035 3144.4249 4667.7276 33320447 dsra Sulfur sulfite reduction NA Desulfacinum infernum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 20381.2579 17107.5896 15569.0295 25101.3475 24329.3194 12455.1568 83779.0902 6807.1204 15805.2848 22798.2337 13907.9961 268706.2543 23439.3357 26334.1509 16432.5564 17211.0605 17211.0605 9394.0133 24805.1871 15827.584 14094.7078 31559.2214 22370.8404 14090.1179 11738.9275 19244.5111 85275.1886 49797.6988 14900.9237 23945.5559 8355.7784 16178.8209 22770.8288 19843.828 29250.878 302522579 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13991.6909 5647.113 9638.0866 19689.6509 63034.6114 36047.0913 19511.4891 9492.8112 9582.697 11994.2383 8934.2612 395389.8939 17471.7137 13600.2217 36109.7785 23576.2988 23576.2988 59206.0866 49500.9577 47735.6446 9080.5884 11500.7786 18108.692 46541.9138 13038.6293 18236.1738 14297.0306 19151.5933 97141.0699 19388.8204 17247.4131 15411.6271 12616.415 11570.7875 13716.9463 109290273 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7002.3539 19320.7105 3197.5811 3875.905 11669.493 4144.5015 7839.3173 12859.7213 8558.3525 8558.3525 3172.0816 26907.6253 5127.5428 6091.8394 4341.4654 3473.5495 8724.6925 7608.971 5355.4697 14735.2262 6281.8975 6694.4857 3674.542 4860.0468 7006.2824 2433.1533 119391495 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18002.8519 15585.0008 9370.523 16638.7441 17109.3759 14198.9428 14387.6923 8947.3515 27916.6429 11234.4126 196228.8493 33948.904 97432.4861 112285.2445 16755.6344 16755.6344 18718.2016 20231.0973 22813.7428 32743.7308 15436.5533 16284.2954 11633.0739 24290.8767 54049.9883 36157.8832 69475.9712 19217.1991 32336.5731 11340.2636 19721.493 32822.5084 8072.9052 22184.0799 121711156 oxdb Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7617.2736 35670.825 24709.7111 7161.8797 2785.9249 3301.7564 4987.4844 2732.9525 72104.5082 3944.6225 6303.6219 4961.1346 3114.4141 3114.4141 3887.6136 8549.9272 6740.8872 4080.3088 82977.0266 2619.0353 2653.5987 13933.0361 2441.3189 11203.9761 7612.5261 8498.8039 5201.5786 4273.1 304404406 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 76718.1009 10390.435 10993.3173 5124.064 57787.564 19613.8046 7625.7205 6661.1381 7314.4635 328451.6911 5045.537 8600.8336 5243.9973 17658.5273 17658.5273 3536.3114 18741.772 5820.9809 5533.9511 6171.3581 27622.32 4691.0386 15628.0703 28325.6391 25220.0251 326723.1563 5733.0419 13524.1949 37731.7458 9984.5252 7356.2888 2375.9191 4423.6867 374702218 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 18735.13945 11759.10455 101687.9506 12487.2176 7375.02505 8483.207 5214.42565 12587.10155 15251.03105 6464.89605 260132.80945 16493.2705 13548.3396 9485.6812 5195.9609 5195.9609 8774.87865 20272.5546 19032.623 15452.17505 18085.70485 19504.91555 6337.7523 7216.2195 23250.7331 6346.8492 34860.1182 18783.4493 25771.95075 6231.7743 9563.7957 9903.49245 6520.6378 19364.2967 238937072 endochitinase Carbon Cycling Carbon degradation Chitin Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 4062.2255 28623.9482 4072.7261 51445.3048 6242.6651 6242.6651 7690.7214 2291.7887 9754.457 3595.6721 11308.6194 12658.3575 3530.4432 3015.112 19880.1647 7757.6045 214044973 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4172.3678 7453.2259 1831.0452 28800.9536 5228.5368 68187.9011 62102.5319 3846.8696 6382.1485 5907.2478 4634.6198 4634.6198 2703.5384 5533.9566 4727.6449 3089.0838 5924.6137 4548.8061 6768.0288 3465.2997 10817.0549 406036.3611 3423.4312 3138.0074 355678227 amyA Carbon Cycling Carbon degradation Starch Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 38377.6581 21004.3829 42972.9323 76515.4851 117102.6692 16185.3474 48205.4907 53629.0709 26896.8907 39480.8736 85231.1819 20529.5307 1898090.9925 43869.2537 55480.083 54619.9347 50866.1883 50866.1883 25666.3128 57520.7858 61579.664 43271.4865 51623.0377 72189.307 23850.3905 21222.89 63290.8145 44088.4792 98242.6629 102635.3622 57110.5986 26181.7463 28072.163 28196.6769 22740.7358 65400.0556 33391427 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5439.8229 5862.5879 9255.9628 1940.2022 2353.4642 3365.3674 7793.9943 5043.1196 68057.6266 3958.9268 5387.0678 4427.6184 7550.6662 7550.6662 3362.0086 6888.3901 16178.3544 3698.1578 8617.2023 3805.0585 2208.3458 4372.9194 10925.7768 8723.4515 7543.4432 4735.4386 14166.6401 1947.7834 4396.5718 3123.2978 4685.0817 226347240 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9551.1075 6058.8872 19214.8052 2912.2433 2813.7421 2289.75 4556.4249 4840.9625 2586.1831 134648.5841 5190.1196 5239.9924 8058.6246 2236.5478 2236.5478 4299.7011 19194.2402 7378.4498 23994.5499 8730.6684 5786.771 3452.5576 3103.3084 5441.3166 2528.0873 12362.3625 5149.4533 7075.166 3643.5268 5628.5327 6680.9815 3675.812 5535.1085 296283816 linb Organic Remediation Pesticides related compound NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 6237.8654 6707.8302 140304.5921 27653.9522 5411.3101 2711.8375 4405.7502 13223.7389 6748.9369 104634.2156 9762.0698 9819.1278 7609.1906 3620.4246 3620.4246 26425.8341 6933.1754 7804.1327 8211.4712 12996.7788 28888.8493 3223.4736 23864.9261 20045.1664 10548.7291 3468.6326 5116.0054 4162.8545 12908.418 5893.2647 558805 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 185468.0605 7001.063 11325.2848 4428.8349 3388.8362 4113.6432 5494.0427 3664.4622 2567.4491 5121.2793 15908.1609 4491.3688 7324.9318 7324.9318 3344.4728 7353.5307 11013.1999 11696.4237 2109.8414 3535.0018 12005.227 3767.7914 33197.8444 14414.8487 7774.6464 3704.9745 4311.9582 3968.8231 2828.5553 9316.9542 307700793 terc Metal Homeostasis Tellurium Detoxification Mobiluncus mulieris FB024-16 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 36617.4343 11356.8207 28763.8971 137161.3732 507495.1465 9273.1582 27798.4444 7437.3259 38440.2807 141000.3092 26990.1418 752324.6907 41452.9497 54057.6001 76386.6418 47517.2688 47517.2688 28707.2685 46795.6726 41977.5251 27653.6896 59285.1448 17135.6578 21416.4968 68002.4406 61837.09 95236.7056 190740.9281 523024.0478 67617.7017 22763.884 30834.16 58267.9877 16264.6722 29664.1183 226089643 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 4910.6756 15304.6453 5297.7353 3527.9772 5352.3574 8879.4495 11642.6536 21246.8604 8153.0168 8965.5289 11324.199 11324.199 4399.073 37818.2657 8233.6808 5746.7887 22920.275 4665.3356 4595.9443 4952.8826 6692.5875 60377.332 17784.7293 9904.7886 17757.1984 8010.5624 11366.095 8789.7894 14137.2505 146406446 napa Nitrogen Dissimilatory N reduction NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15122.5763 4951.01 30215.1352 20182.941 61115.0679 3883.9077 9007.0149 5298.8258 8083.0629 5627.6917 99268.5313 9345.7238 8900.6141 12081.0973 9478.4723 9478.4723 10581.5178 25571.3386 8721.9991 5137.0018 6614.403 10181.6805 6261.6795 10285.1147 41306.6739 36244.1778 227266.7346 15233.5269 18148.821 8995.7686 23862.7403 11400.9183 5985.791 5990.9398 222543363 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 7295.9969 43640.239 16346.1555 2069.3983 3954.1945 2725.4807 66598.6293 9533.0332 133744.2904 133415.7693 6976.9874 6383.6886 12436.9855 4239.7408 4239.7408 3641.2389 11633.7084 4408.2455 9810.6616 9880.7202 9358.7186 5681.8717 4471.9849 4650.0369 3795.9067 18680.6088 6862.0282 8065.7724 5820.8329 10864.2895 3942.2214 7355.618 219542518 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 5160.6692 7119.5295 3273.5866 2366.3296 6248.9867 2675.1272 63448.9409 5735.7638 4579.6402 4769.7214 3016.3356 3016.3356 4247.1224 12104.879 5160.1466 7516.2509 13960.07 6012.7889 3676.2134 7485.7274 4031.1516 9476.2325 7555.9597 3267.0659 6725.1312 5032.3034 3579.2238 8783.0615 46578391 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes hirsuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 10100.6409 15143.629 6758.4489 8272.6301 13058.5314 7402.6481 6070.878 2846.1715 7232.2198 8248.7138 3795.9548 281454.0519 9954.209 7775.4137 6819.1064 9636.4202 9636.4202 5453.634 10268.6744 6611.2273 8606.8078 13134.0579 8005.8022 4735.0054 5365.2419 13142.843 22575.3525 38618.4641 5769.8013 11781.826 13657.5598 7590.5984 63282.424 4759.2393 7836.3834 383824345 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 225637.51905 29399.2127 99747.2171 1804940.528 35347.01815 598863.1498 39947.86445 50516.53165 117207.5793 167940.9085 72230.74835 91615.8329 1714604.31905 104123.32945 244098.80035 52735.6143 52735.6143 92992.20735 43965.13525 184714.6232 159752.17545 176126.0132 161535.70795 85878.6639 126228.80915 177599.1991 262614.40935 359035.5546 48211.4473 49661.85555 280883.00565 32434.57995 127314.15895 398059583 vgb Virulence Antibiotic resistance Degradation Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7949.4317 6733.7266 7819.6975 60276.043 27781.5604 14205.8828 20824.4927 9231.6234 6670.1237 14537.9958 33215.1152 261537.8818 13438.3127 13092.8216 31098.9004 16950.6265 16950.6265 34594.491 25317.5224 17271.2185 4462.6156 12434.5792 85128.8514 9733.9179 11366.4439 19555.7405 8289.8358 63601.8716 26977.0567 25899.772 9211.8336 13962.8155 11553.3504 54216.4889 19610.053 302404451 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 4114.66 7937.9894 28596.7807 10411.595 5776.9967 2956.9915 4029.0435 2380.7209 90255.4704 5271.8568 15308.9533 7716.1851 7716.1851 3692.4708 9611.1751 8172.7833 4998.6944 4087.8406 8868.82015 2330.6591 12305.9534 6233.9542 7461.1141 3423.55285 4032.2158 35995.1418 6381.1348 395004104 cmci Organic Remediation Aromatics Other aromatics Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 5695.3103 5558.5952 8003.0578 4948.3189 9381.6097 28901.5214 6165.3911 7600.1419 9707.189 70405.3716 8425.206 8597.4539 2845.2482 2845.2482 3337.7715 9274.9422 3678.232 6355.4098 27762.368 5868.2701 2952.6936 6781.8702 7746.2473 4713.5981 11105.3214 5964.6565 11210.2078 4186.5094 5833.7172 5097.0252 4061.8957 6947.4185 50542742 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9908.215 16572.5467 7862.926 7797.8022 4307.7068 7790.8739 17877.351 6345.7428 172774.4909 16576.8571 10855.2647 5109.8447 4915.8328 4915.8328 7020.598 16473.6315 10456.5118 13417.2293 11668.3778 10949.1203 5449.2031 5433.6511 14236.42 6083.8416 18409.247 8201.3576 11304.698 6279.9064 5951.9045 5197.7582 7521.895 13203.461 295698875 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 62152.8167 8793.0549 64791.1725 29924.7336 10564.8132 12221.1211 44568.7455 14158.3814 10734.7363 564856.8471 28930.5461 19390.3125 20887.2778 16164.4459 16164.4459 5563.2373 22255.5168 12367.5235 7085.0482 12516.6862 53386.664 6151.2597 12242.277 18114.7861 15039.7688 41127.3003 18864.1448 37556.525 5571.0942 24718.7022 17027.518 54903.2222 80181.2409 327316352 amyA Carbon Cycling Carbon degradation Starch Archaeoglobus veneficus SNP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus veneficus; 7077.3524 48729.135 12892.9409 16916.9541 16533.8226 5623.8771 4595.2448 5355.974 6906.1507 7346.4479 6245.8628 133982.5812 5812.8982 7001.7157 14687.3276 4901.2055 4901.2055 4164.0915 17181.4402 7220.702 5364.9151 18842.9477 4871.5458 3071.5551 4089.3019 13272.3477 11554.1115 107040.5775 10128.9279 10650.4976 3030.1035 5613.6004 3329.4473 4553.4519 7043.0273 165988104 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5949.5645 2408.4151 6298.5005 20118.4993 6029.2376 72907.4217 3457.8539 5258.7667 2485.5031 2485.5031 2814.3621 7572.1499 16950.6699 7932.4276 4968.7629 4065.4359 2260.2918 4383.8178 6464.6005 3295.2139 21411.1444 5471.4093 2096.1547 5241.9432 7010.8 3132.1241 56077.0884 82618403 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 35514.02 13073.1813 32107.3435 2410.1468 9207.8914 27244.6856 78287.1686 7071.914 9175.1496 61929.0142 5793.2162 6545.4229 6144.5085 6833.0995 6833.0995 6390.1593 13439.5403 7726.3991 11985.7903 6508.126 7093.5979 3130.3617 6191.7406 7941.6248 18815.601 14014.4305 19810.5601 5750.0835 8033.3497 5003.0248 10530.3751 9278.2091 319798666 narg Nitrogen Denitrification NA mine drainage metagenome 26634.7375 14255.6325 7377.452 8740.847 6427.843 5126.2435 97704.4786 9349.6449 14155.9736 7128.3966 2713965.035 9620.6022 7680.2158 11044.482 5161.9756 5161.9756 8287.5615 14845.6374 9056.031 9657.5524 12847.842 8977.1575 5349.1967 10345.7645 17309.2246 9628.3577 20940.8431 11417.5404 64398.6892 4605.8346 10282.0714 8054.97 4999.0269 11612.6292 70985478 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 38213.2585 160906.2489 15028.0736 13913.5782 4517.8864 20853.3671 15903.4119 12932.5401 27581.7397 23751.8857 23499.1191 481332.0951 24917.2109 103134.8198 29200.8832 19734.3054 19734.3054 270510.2541 38150.1338 29911.0579 14253.0456 30938.1261 40864.2118 27045.99 22684.8264 31175.2338 18730.4956 68062.1348 19943.1912 41863.3992 10018.6019 18624.2298 14278.9677 39995.3207 30232.0884 319413947 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 38732.2699 9987.6323 6781.1202 34594.3514 46950.084 22061.8648 6883.5917 10816.5849 3170.358 12676.1658 37345.5908 18142.5798 229281.0016 16496.1158 17342.8444 26510.1267 15758.1027 15758.1027 6974.4519 17414.4414 11212.1701 8140.1735 20685.1909 11848.8232 8104.5418 13981.5952 24282.8616 9852.4763 24537.8388 18049.436 36148.2723 5935.6547 14258.1997 13311.9985 4557.2236 10914.8597 52081493 amyx Carbon Cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 4861.7979 3891.0453 3098.7489 3785.1867 5712.1413 3661.2083 67749.6615 4240.6222 5894.8137 8770.1314 5835.8654 4718.2117 5483.2365 3402.8452 8837.302 9682.7573 3191.402 4160.5047 5292.1552 2189.4805 46850276 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 96751.5434 65200.6417 23263.9923 66185.842 6298.2156 13381.0233 22552.8501 29816.7982 21863.731 41230.0002 21944.2514 362382.3793 35220.239 35006.397 14481.0668 14921.5408 14921.5408 29137.7541 58443.826 24908.5635 29152.8684 184751.8381 31256.6868 32393.0534 29064.5063 28800.1701 16229.2769 566172.5582 79309.4794 28005.6882 16256.1095 24040.9875 26558.3821 17524.4986 86886.831 359426047 nirb Nitrogen Assimilatory N reduction NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 21882.1085 7921.1311 11658.7284 5346.4782 7378.4275 3213.0089 5096.0383 15849.8548 14628.1489 145725.4433 16558.4922 14285.4116 17846.4639 8313.7758 8313.7758 3782.2688 15673.6233 20952.1782 13810.7527 17512.1198 17724.6499 3704.6714 12080.7187 17806.7112 4493.1312 25011.7595 18057.9205 14723.8587 15857.4443 10706.6721 10624.1133 4889.1634 11159.5528 315596504 aln Organic Remediation Others NA Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 255441.0713 15571.3542 131918.4243 383271.2984 87104.1381 19024.4947 82584.7055 211402.7267 28083.7663 68510.7821 92456.6605 118783.6224 3116135.2458 261874.1496 151732.4295 101605.1055 89987.0407 89987.0407 49388.6415 91071.6966 107061.591 82379.2149 269958.3214 81037.072 87803.4027 88972.9139 109124.1256 85005.0601 160302.7064 154472.8658 111378.8981 57834.2951 79731.096 126687.6971 189144.5268 707216.8295 342316532 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 60288.9784 25498.7362 72987.6781 19508.025 6492.5432 23938.5657 20325.5867 45570.2645 56386.0463 44277.3946 31866.5626 450956.986 86055.9788 26931.3574 33107.9847 62037.6694 62037.6694 16533.7767 53412.9648 22797.584 266438.1838 62485.3432 56507.891 63610.771 28079.5702 40026.4629 45062.1914 100706.8424 43859.299 57480.8868 17036.6897 36510.1288 54475.1867 36302.7646 61948.1195 375057619 amyA Carbon Cycling Carbon degradation Starch Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 348105.1205 48844.6056 111664.9586 1834860.7518 133900.7288 38889.2589 131696.1738 64554.9289 132645.8253 142330.182 76389.3138 3044136.9997 732939.1893 183402.7291 362135.8456 118795.431 118795.431 87754.952 182891.1675 118312.3742 88137.1988 55879.5221 191580.5486 80769.1268 113980.3034 274470.7451 75777.8376 595889.8358 379683.4478 218230.508 69729.3789 89057.1711 119218.8379 55863.3984 65980.922 260642396 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 68534.6464 31887.5317 826852.1775 18274.0416 9745.5219 252859.2189 8168.6361 4634.998 146765.5753 7685.8057 10293.04 9205.2326 4878.4092 4878.4092 6594.5144 6010.3116 14454.6067 24056.893 11278.2781 62769.9524 5210.3876 257231.181 149663.3703 13216.269 174168.5053 9899.1345 6096.7391 4599.5121 7306.9681 159385.2065 73188.4205 15788813 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6176.3232 4799.5419 2854.3705 5227.4466 7307.9157 122850.1455 7664.5757 3711.6589 7758.6263 13160.1143 8817.0237 8580.9873 10680.2716 11869.981 3938.8095 4480.244 11352.4144 3420.4772 17718.0193 7936.713 11002.1149 3602.248 6261.5692 7083.7035 4986.8173 10012.2845 315467983 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23722.8786 306742.5472 47720.2104 40826.1304 11767.1274 45322.4725 19725.5456 56930.718 34664.3755 43876.5853 4328178.0199 73079.5181 31422.4721 16473.0471 46774.0826 46774.0826 15932.1785 49724.4407 17786.789 52582.7157 39137.9842 85096.2551 18357.8289 80018.2663 12948.9576 25740.7149 101740.9872 57895.0442 31383.2523 15679.5554 27076.5738 45763.1203 13185.8854 66712.2967 121302140 mer Metal Homeostasis Mercury Detoxification Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 4599.8418 28561.9246 4139.8548 11655.8817 8919.4918 8730.7774 3622.5378 7290.4766 6866.0856 5352.5822 2426.4519 4863.2719 2118.8727 3737.5984 3671.0978 3463.2408 388584886 terc Metal Homeostasis Tellurium Detoxification Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 40551.3231 2748.4998 4032.9913 112460.5546 3898.3798 7910.037 7910.037 12295.9219 6422.9034 10068.5396 4433.8515 5239.4424 5400.6478 2900.5053 12472.8452 2232.4578 169846188 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 44161.107 23698.0184 19693.087 12583.2375 9646.5862 10380.5724 77760.3129 21314.0139 35757.6375 47984.4116 352472.8655 13728.9736 93149.5704 51624.7438 31481.8754 31481.8754 31297.6526 39706.7284 17072.7231 60363.1983 69478.6975 20012.1462 15408.6785 17861.9169 16835.567 15552.298 60135.8045 15143.1582 39347.4469 5495.236 17486.3445 25860.6704 9992.8656 33693.5952 312197871 cymc Organic Remediation Aromatics Other aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5353.1142 1941.7995 3307.1652 4531.5383 395809.5825 3829.0956 4174.9143 3459.057 3459.057 6888.7183 5240.8343 4312.5027 10180.9216 6035.498 2542.8227 3491.0949 5361.2528 2528.4333 2863.5424 4664.7436 7295.2889 2844.892 2804.5914 2379.4718 71126.6263 167351638 nitrilase Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 931711.1538 90031.7114 127433.9205 168553.7689 128206.5619 38653.8589 78138.1028 108904.4957 131981.278 128858.3766 216866.1684 99056.2234 2936786.3446 134166.2367 164696.1439 168159.12 313196.0181 313196.0181 86228.0841 134663.714 76765.7208 153351.839 144484.975 128867.0254 113278.5169 83363.4183 132678.2811 90184.8503 173303.2454 136430.1976 177126.9359 95221.3654 71966.2873 109965.7907 71013.1578 179576.8521 290467861 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 7390.8378 11048.152 5061.6827 3239.0801 3764.1395 3690.6707 2602.7082 2602.7082 11658.3611 5521.8588 6308.9488 5245.9404 6320.4497 4757.4595 2891.3039 6089.9487 4504.7935 10393.4109 5297.3555 7296.0487 1778.4535 4331.5875 4021.7575 2756.8326 4962.1874 311284389 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 17081.916 12505.6242 29898.4894 17694.0373 20802.5559 39506.5539 17077.8294 8174.3757 12822.6754 7315.6175 10069.6092 22746.6671 696850.1734 6748.3993 23303.974 13144.5716 16620.0137 16620.0137 5803.1137 28245.7296 12575.0028 12096.2275 14418.7006 14207.6619 9371.1221 12660.8882 18233.4745 69436.6683 26250.1822 36616.6675 34919.4462 29568.588 16071.2193 9479.7908 9695.5541 19174.1699 256782151 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 284979.2797 10368.0163 1111670.9897 112722.251 136442.8879 95950.2565 42954.3915 100739.1293 34030.2523 56082.8634 79359.2257 48030.162 1017231.2868 91161.7523 55767.6202 76835.1767 96907.5328 96907.5328 33827.3166 63722.1616 27760.2964 326067.8768 93491.0557 206800.3558 48762.6057 40281.3339 94923.6253 42640.4212 123970.803 59101.1999 101189.4547 37797.7541 39323.9586 52783.5519 30383.222 77251.8362 45386121 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 16482.6199 203385.7599 128623.9502 20296.9572 7750.499 2537.5248 5754.5056 7234.9526 8903.5679 385502.1145 5559.9823 12527.2155 15502.3827 20286.3502 20286.3502 5747.5888 28584.7828 18463.0099 9353.3544 20216.4584 24337.1664 3771.1163 12676.9174 34893.158 13556.4581 30949.9903 29453.5667 21062.4309 4372.9472 8469.1838 18395.218 10409.2474 13520.2546 373942411 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 6222.8647 14108.4862 6864.5983 2781.3092 9333.7611 2608.7639 5970.8841 371519.4927 4700.4318 4482.4126 3796.1689 7130.5305 4411.9162 4411.9162 3660.7857 10423.3556 4854.287 9406.9004 12701.6587 6468.2263 6296.5697 6656.8154 3598.7558 13259.2762 5778.72 3122.9174 5349.1249 8149.6225 3087.8868 12387.271 289671278 pme Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. musacearum NCPPB 4381 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 67796.5839 65302.4799 17145.4166 18732.1694 16252.7833 31594.0572 62801.5899 46031.4741 96273.0116 54492.8021 60224.9365 666676.7305 19628.9908 57634.68 210073.0161 68865.1433 68865.1433 10955.1132 31882.5622 26787.9887 27138.1418 254110.1682 50816.5671 30371.4568 29276.6015 20566.4599 15157.2444 54185.0427 26799.546 60899.4047 8455.9588 20435.6072 26212.533 20764.8218 57114.3345 343426787 glx Carbon Cycling Carbon degradation Lignin Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 37018.4845 19913.681 13597.4993 5473.2073 3709.9539 12319.0181 24277.5929 4278.5462 133638.2067 6688.0511 20687.6677 10225.8799 4692.6923 4692.6923 5082.8034 13451.7686 8827.2194 6047.0054 6275.9986 15069.3566 3913.7131 9976.6559 10132.123 25332.8496 23247.2805 5924.8074 14982.6514 5334.1697 167188.6046 7725.7867 12637.7311 7003.1639 328544805 catechol Organic Remediation Aromatics Other aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 11498.1809 18600.5371 17915.4287 11933.9217 6684.4006 69914.2793 10989.9925 6705.3494 3649.448 17929.034 11962.1164 513259.6142 4651.9689 9033.4054 10138.8877 38658.9505 38658.9505 4052.5485 28644.5068 22564.8743 15298.5267 24582.4385 11278.448 5055.8483 28512.7772 6820.281 11183.0129 13945.9893 40442.6078 11569.638 2517.6619 7773.5435 8332.4208 5744.9798 14271.6164 158524008 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6166.5139 20560.7915 3670.9356 4220.3572 4156.7205 8104.7456 7256.534 66710.3195 4476.8502 2156.3667 2156.3667 3574.812 15295.8054 5778.6676 8861.5951 9331.1628 4423.2463 2972.4516 9485.1147 4019.5769 11914.5697 23846.4884 8220.7579 3888.4106 4760.3235 5581.5021 3886.5737 10270.8611 4633556 nosz Nitrogen Denitrification NA uncultured bacterium ProC superkingdom:Bacteria; 10043.0785 6409.50445 12293.95715 12280.64755 5357.2578 11143.3025 8143.3962 5799.15565 21490.3369 17837.0424 4277.9573 182454.9049 13738.0504 13088.57935 5088.19335 3867.584 3867.584 7790.8175 15096.3671 9708.92065 10284.8955 12985.26725 10651.0583 5754.44035 5234.38785 13072.17245 8124.77835 20433.154 12285.24275 14847.2995 6022.99085 7547.27645 8370.5619 6441.9651 15558.39275 227069417 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 27678.274 8491.9746 7578.9642 21017.4083 7038.5718 7714.6631 8338.7494 2435.4472 7497.9732 11336.0526 8564.8657 166659.9266 6693.1933 23139.8216 32403.5048 26867.5679 26867.5679 13420.5784 124754.3177 13249.6778 11275.8958 9038.189 24108.1752 11058.6783 7365.969 16231.4362 25070.7148 26310.4766 17297.8184 42074.2265 8093.1001 14613.3968 13635.114 6225.9288 15851.4764 371459039 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acetobacter pasteurianus NBRC 101655 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 143946.6476 28293.7431 230924.1094 62101.0297 117567.3953 35674.0009 265595.0371 79471.2476 70143.2941 120359.6576 676672.968 98465.7924 1995074.7488 291220.0505 308031.1298 190608.9273 139842.7509 139842.7509 97081.8133 124377.0954 61266.8413 129465.8812 223881.4278 220677.8388 97849.6453 151058.6125 94482.6432 96328.7942 246315.8006 134301.9369 194590.2305 182548.1541 91514.6769 198604.6157 58832.3031 106418.25 182411857 mannanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 765289.2737 649857.5946 626680.7535 982882.255 436268.4645 1676745.163 630553.34 737633.1583 622890.1488 647896.5871 638998.6978 381702.1669 14813677.9238 516580.1022 948028.2144 1500713.9154 664957.175 664957.175 414956.8174 689586.2864 360483.5417 684856.8315 745046.1168 763169.8679 377158.5403 419484.5309 476274.2356 318772.9717 1233215.1224 821880.3114 646775.9163 423517.2851 353915.6836 418375.3034 256023.9568 1097317.3885 315494542 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 9647.3428 7412.1288 3515.5251 6652.9871 3780.0627 6817.3858 8623.3554 3685.1518 94407.2529 7947.2734 5505.154 4868.4995 4015.9498 4015.9498 4606.7184 11632.9625 8430.0162 9869.2981 12456.3197 3870.144 3445.8969 5055.4899 11049.1603 5039.0624 22477.1324 8483.6959 11747.6074 5341.3299 5398.4 9714.3535 10354.9299 13497.6886 57016642 ppx Phosphorus Polyphosphate degradation NA Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 6460.083 9184.9167 19333.6945 3343.8153 57276.0881 5403.0068 144943649 terc Metal Homeostasis Tellurium Detoxification Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 10199.1283 4141.6276 3907.9671 5800.3017 2939.6139 8421.5981 10179.6847 3481.2777 87238.9617 8128.0311 5991.0745 6886.881 3037.9931 3037.9931 4986.8762 16857.2632 7430.8318 7396.7629 11981.5596 11698.9614 4582.5849 6030.6504 11535.5593 4557.8334 23956.3505 13223.2258 15771.2664 6832.6473 7994.9906 6397.2973 5037.8153 10211.375 121706314 phospholipase_B_fungi virulence degradation NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 31981.4239 19188.1699 23647.0572 45035.8407 7311.8821 24709.0632 27185.6156 12239.6365 19778.8883 36606.977 13430.8011 557461.623 26047.1993 29645.5022 34544.4401 12286.8629 12286.8629 25175.9617 37947.4076 29677.9287 33220.9108 36276.3166 48881.519 26248.7788 16193.5901 30736.2318 18207.7807 45206.5587 30194.6026 28180.0036 17338.5866 19764.8348 23228.1733 16928.2907 43425.6323 294678706 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 4483.9606 6256.8263 6520.2433 7887.8227 6182.8518 21592.0205 69393.395 4791.282 3460.8697 7263.9648 3653.398 3653.398 4428.5458 15263.6819 4917.7057 8656.9518 14561.7314 2623.7177 7390.8682 132923.2915 2008.4477 10525.3495 5314.9713 8389.5902 5052.85 3877.2458 8746.8021 8381.4127 167752017 amyA Carbon Cycling Carbon degradation Starch Alistipes putredinis DSM 17216 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes putredinis; 7067.2052 263765.92 67226.1566 5376.2809 5156.175 31022.5812 5122.5286 3768.8698 4594.4504 61557.4418 6690.4755 9955.3619 6948.0528 6948.0528 2679.2468 10827.1363 8621.8564 31383.523 11467.2193 5205.9967 2752.7954 4250.8686 8702.0921 4374.3758 15847.3091 49022.7264 7793.0141 6679.6247 4241.0927 4703.8444 3557.9842 403655512 catechol Organic Remediation Aromatics Other aromatics Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 16852.3623 11215.3993 31484.1489 17850.2232 19362.8284 11524.5589 6912.2615 15181.2322 21305.9077 11246.9578 422138.0069 25875.3893 17536.1872 7589.034 9478.2074 9478.2074 12029.6774 22369.0195 14211.3042 14779.7853 19034.9046 18164.8002 12441.0822 18479.8996 17879.2017 7736.251 25954.168 15662.5954 34128.3475 8974.1848 13428.9487 12331.7141 9277.3447 56264.5196 118569351 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 22502.8708 16438.8021 24766.4591 15002.2777 8388.9043 16955.9511 52376.4769 7987.8897 58664.5753 35970.4234 23121.3153 365009.0897 32435.8198 49032.1233 37643.854 17531.8593 17531.8593 23580.3331 23272.0906 48982.6353 22915.1842 29533.0875 13081.2222 8777.3111 14129.9976 22700.6516 18069.3817 30173.788 39318.5437 29512.2479 21184.0609 14148.6847 24214.0885 18814.9119 16223.3029 119391545 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 129342.09 17434.1787 320706.2122 70389.3831 63933.4849 15023.2974 62344.1231 112533.4247 220441.364 159238.5984 135600.9325 136285.9799 2169454.8187 71021.8962 71928.8517 127062.6191 99716.5167 99716.5167 48766.018 124475.0187 57418.8178 113766.2366 106122.4616 101473.6092 150917.22 64601.3547 100734.1212 98866.1937 310134.7597 74489.6356 136140.8973 59332.455 82887.1227 108958.5745 67973.018 88460.0044 331694637 catechol Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 51301.32 333305.36 7024.2105 27702.6495 23093.9665 35269.3026 12952.1042 80035.4698 89190.0817 56135.8319 484870.1304 59127.757 78438.3232 119719.6989 46858.2134 46858.2134 15225.9187 52293.8329 33163.9208 27703.8338 48064.1565 20809.8803 513646.0805 32304.1699 58919.7314 30704.0968 61605.6617 82306.2259 258626.8529 12730.3347 29803.8886 56407.8602 35832.2103 24718.3435 307218301 amyA Carbon Cycling Carbon degradation Starch Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 22511.6925 21109.4131 11174.2665 23857.1679 6903.3777 602618.4009 12109.7511 20382.5471 12760.3571 27532.3204 13852.4042 242607.9219 15904.2297 18105.8215 14260.9757 13062.3768 13062.3768 12938.1072 28269.6217 16447.8105 65357.8667 34701.9354 20747.7471 13072.4541 11236.565 21254.8768 9659.2036 37209.0268 21708.3292 19250.7213 9327.8298 14318.0371 24561.7024 13124.7135 31920.1432 313104774 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 108073.7195 41811.2125 21683.8832 26391.6755 14349.3079 29907.6724 40106.4118 17938.6369 26924.4679 46717.5328 43074.2903 528081.3379 48020.0022 29749.9639 46871.6025 53044.3864 53044.3864 20404.8313 52047.0191 24112.7988 21742.9683 110222.3106 74781.0132 24915.5323 37029.7783 96358.8507 62828.5022 106015.2052 47780.4478 61229.1868 25837.531 56515.548 28611.9078 56725.3633 176730.1894 238936858 glucoamylase Carbon Cycling Carbon degradation Starch Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 8462.6925 40361.446 35453.9929 5024.329 22446.3636 4617.8154 3515.6328 4825.1265 4617.693 4617.693 5718.3924 2942.0947 4957.8202 5763.7748 4215.1238 9767.4774 4111.5631 320550141 rubisco Carbon Cycling Carbon fixation Calvin cycle Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 200457.6337 33535.8221 8080.4104 6010.885 5924.1642 6665.497 11899.5106 12111.5918 16603.0209 352217.0764 13544.1706 11836.0767 17437.3046 5130.0235 5130.0235 7892.853 24531.761 13452.2295 10781.3438 18338.2902 19852.0676 6273.7616 5699.5301 12059.9078 6247.799 25437.8711 12798.392 19551.9198 7130.8229 7089.6901 12297.4226 6471.4942 22854.4438 354582851 cda Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 8410.0681 12915.4999 7923.2018 212171500 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 34372.8526 23316.0794 52961.0803 49527.7271 11468.2164 28129.4702 20032.5561 15394.2553 33648.6157 28927.6914 13823.7778 672581.0453 58094.1811 33574.8551 28100.4235 22409.4449 22409.4449 19028.3729 42011.7912 25214.9735 39614.9883 41945.6753 48968.1516 17987.3118 13225.4496 43635.9294 13765.975 57268.3302 15242.3054 34242.0256 18502.6481 17343.5783 18201.5316 13546.2837 41992.9379 209401604 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 115197.5787 12551.2543 46438.9679 54727.4698 82477.2453 15788.012 92158.6883 40779.8383 55563.3268 110996.2227 69132.1071 49932.8004 1182327.1941 66845.8077 45526.685 56370.6806 41386.4591 41386.4591 92384.2552 95870.9486 51024.136 55373.8392 89557.7283 197126.5723 29621.8786 63703.0953 55250.3593 40691.3753 112342.9241 60772.4205 124505.813 29062.2414 57953.6053 52887.7265 50411.9724 75178.6809 349700190 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 171937.1902 358184.4403 254724.7322 157151.4646 35946.1941 228354.8558 251794.5844 80231.3713 156422.3172 149972.3551 170652.1644 2541065.4791 154965.8024 541132.4863 1958347.95 181749.895 181749.895 95202.5394 240239.0683 343860.252 839168.4891 238066.8958 309642.6121 101994.8339 92936.6152 190881.8429 183145.9716 505989.4464 169221.2577 157623.5826 124011.4467 187800.0443 189799.8557 151313.2119 276149.2422 323137710 ppx Phosphorus Polyphosphate degradation NA Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 14937.812 6570.8093 34759.3159 55937.8581 30065.5904 8635.4861 16328.6774 25905.1958 26252.7712 17110.3198 36519.3046 287838.6464 17749.3966 44010.0233 23312.2233 20568.3422 20568.3422 9245.697 44617.621 21247.2639 15614.9625 18640.364 23425.6337 8615.7364 16448.6478 55873.3068 18424.3312 54389.9006 44940.0841 48330.0064 12750.7136 19231.2589 33973.371 9803.2905 20407.3711 381382375 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 21067.6245 26174.6226 133756.0682 12312.6033 7861.9299 45130.8116 22198.6753 15115.9277 17258.7434 105043.2271 362348.7539 15120.9953 23678.703 18637.3523 46151.382 46151.382 11024.8556 28496.9954 20439.0169 17440.0266 26028.7022 15803.8228 40509.8677 16313.0663 18993.3114 14116.158 54207.112 45812.451 27016.0337 8446.1417 17320.4218 21990.4304 18748.5383 19939.514 404422002 dbdd Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 35025.7146 6882.4313 3649.8831 3364.0608 4027.0056 95850.1288 2750.1756 8811.7245 5178.0469 4559.4291 4678.1679 2191.6924 2906.9623 5547.0995 3068.8782 11716.8917 3996.8032 7442.5886 2431.7853 3916.6637 9953.3823 2114.8569 266619375 ppk Phosphorus Polyphosphate synthesis NA Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 4165.4459 30852.8587 5859.4725 11187.0951 4124.158 302445931 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 135780.9534 38790.401 395427.6325 56003.9768 251007.4585 384711.0646 43288.0396 132834.9248 67821.2474 119642.8069 117698.1665 78027.4921 2894758.38 93117.795 220389.2311 258771.5327 156627.4703 156627.4703 50277.432 126511.9003 94681.409 131217.1741 168007.4195 95638.4204 64805.21 108101.0263 141357.2785 73923.3188 384796.1815 171632.8451 144058.18 160038.2535 82621.5843 128847.9039 50419.0541 166375.9279 30698534 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12625.5257 7643.6149 14100.8445 25849.2335 15402.9117 7172.8205 3733.6655 4553.1312 6293.5558 20373.3663 126648.4447 8949.2379 7874.7174 34100.8017 59293.7086 59293.7086 3565.7761 13134.4098 8519.849 25735.1934 71213.6127 9126.3469 19125.7337 7564.4513 19212.0168 12136.6997 14741.0821 9571.6531 10747.7857 5350.6462 6942.6792 8606.6556 12158.7308 53135.62 3978254 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6162.9556 5737.8031 25724.5316 8622.1 2379.9329 7457.3717 3253.7839 4095.3624 2916.9786 73606.9627 6286.2451 10999.5195 5964.6664 6309.7781 6309.7781 6825.5188 8224.8147 5136.1554 4301.1297 7880.1711 2564.9763 9303.7119 9720.2262 3045.1081 4289.6309 3236.6217 2077.1355 150036114 soxY Sulfur Sulfur Oxidation NA Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 33012.4589 12463.9041 13898.9995 8052.4434 16000.7964 42862.825 8818.7879 8906.296 11381.8613 25014.7453 198332.0181 11847.8167 9853.8185 8913.0029 18357.4046 18357.4046 6550.2947 23437.4472 12172.7278 8768.0104 17168.1532 13106.6498 21125.8012 23463.3016 16883.2581 13964.6242 107282.019 13924.1249 18209.3819 9805.1176 17948.9473 11933.2865 23905.0508 14568.6433 18558986 nirs Nitrogen Denitrification NA uncultured temperate forest soil bacterium superkingdom:Bacteria; 5736.9222 2891.1867 3065.7651 3180.1245 128341.2463 4424.7833 3269.983 8204.1294 10640.7274 4598.7719 5671.3793 5650.237 19254.7549 5107.8612 2192.8556 5275.1761 3928.1719 5816.608 162568559 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 46343.6134 5819.4182 21425.7123 4071.8279 194272.5621 5380.1608 7703.018 9135.1532 5691.4831 93427.7737 8506.3499 6895.5492 6265.8155 6034.4909 6034.4909 6849.7367 18069.6703 9822.4371 5554.2262 8586.7673 13305.4332 5021.661 4794.1513 25062.4198 12629.0732 14912.0241 16405.3335 17124.0457 7000.562 18191.3128 15388.1361 3684.0307 24084.0462 399039565 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhizobium sp. CF122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 3822.2244 4442.2379 4152.1557 4124.6483 4219.5687 2192.881 128866.885 5032.3649 6543.725 20266.0798 3834.2329 3834.2329 3621.0076 8865.015 8043.5179 4983.5276 12673.3943 6506.9611 9432.3259 8812.9943 11486.9539 7636.2207 11499.9007 2883.1106 3478.2015 4112.3764 2470.8302 4972.4623 217502822 mmox Carbon Cycling Methane Methane oxidation Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 41009.4405 63308.1569 5214.8479 7063.8766 3145.0193 4935.501 10606.8001 11622.5181 15663.7028 245057.9148 5590.9436 10609.4266 22575.9446 11382.4042 11382.4042 6660.917 15706.9953 9912.248 34631.4192 22407.2218 7109.7415 6857.7196 7622.4445 12816.1342 8329.3951 19129.0987 20133.7649 25126.1923 7148.515 8731.5025 11196.7658 10580.7796 5754.2135 198270009 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 9653.3118 66156.9274 2600.6862 8410.046 7448.953 3632.7989 5868.6061 4572.4958 77135.0679 5645.917 4534.1286 18365.9676 3139.5261 3139.5261 8776.5842 13929.4563 6784.0254 5276.4992 6822.116 7547.075 5576.2596 4576.5715 7587.5917 8190.8663 15111.2053 8471.006 8236.7045 4467.8414 5933.8607 9856.52 5475.9662 12251.6806 336010853 pula Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 29964.7224 22476.8392 29279.5687 136146.8261 17437.6046 5435.2828 10701.0922 12678.8651 16245.4217 22196.586 26033.176 14376.207 659589.7391 36233.5024 23757.8211 20378.912 21724.3769 21724.3769 24500.5312 50991.1798 28856.3213 27300.6706 42233.182 37574.8863 15786.1469 20040.6626 41783.1276 10853.9924 62172.9594 36510.7071 39320.8015 14133.7515 17414.072 28489.0335 17674.7792 58280.4344 261359301 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 11624.1483 5304.3408 12792.4334 40688.7128 6579.9569 6912.9289 14042.7456 12921.9818 17412.5959 9515.8457 130700.955 7966.1181 13726.208 45485.2884 14303.851 14303.851 3359.1579 22301.1391 9123.2975 21912.9151 8512.2667 11690.769 4116.3165 6724.676 20990.258 7343.3616 19977.341 7337.8227 10737.0984 5342.1552 12773.4186 11009.8482 6019.9266 11293.0015 620120 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas alginovora superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14140.8158 23832.1437 13144.6935 7077.7471 7127.1845 12369.6981 7229.5273 9034.7293 8237.4197 25905.0364 6476.0733 383249.9873 14760.258 13294.1948 18947.8727 6372.4898 6372.4898 12046.372 25613.2651 17717.4404 22487.8072 25540.4411 22845.1098 8811.4637 13933.3821 19870.1175 7106.7999 32994.9781 19040.5467 23047.306 8752.7861 10131.1192 11454.4347 10916.474 24408.4052 296847148 chitinase Carbon Cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 93502.1126 10420.6472 31415.1487 48815.1947 23732.8708 10844.5814 42145.3385 41099.0325 618101.5723 26162.0052 57291.0308 55474.5109 1059716.5352 63826.1658 66288.5876 63100.3249 39651.6285 39651.6285 42800.5333 89362.1997 37573.7753 50527.3623 69565.6949 149314.7738 37807.8315 43796.6181 52898.2992 117650.4473 109644.8802 49959.3798 85608.4517 207631.2417 41228.5526 217088.4424 35700.8878 108841.7842 359837192 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 11103.916 6389.8101 4526.8975 7984.6486 15592.7913 3201.4033 2127.8303 7754.8902 6611.9053 4964.2051 139906.8466 23989.5191 8096.2672 45085.8944 10957.9545 10957.9545 6276.7922 14335.5489 8585.3368 10003.0079 233316.2519 11246.3251 5661.565 4150.6816 11105.2298 3342.7823 24997.9606 10576.2285 11787.2215 3173.1946 34144.4052 8394.2237 5054.6994 7727.7053 119371714 narg Nitrogen Denitrification NA Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 9748.7322 5238.8696 6964.4633 12404.6972 11103.8352 5277.0376 32106.7096 29432.8428 17468.4408 158540.9162 13525.5998 25303.1925 7945.2665 103432.8071 103432.8071 5473.8195 15132.4967 9944.7611 14003.6543 119679.6314 34984.5147 5640.2486 108690.4213 20288.9245 5762.1513 49148.3803 11720.3019 25635.3868 13902.047 13106.1064 14055.8096 7347.5246 9919.6128 238550035 cara Organic Remediation Aromatics Heterocyclic aromatics carbazole-degrading bacterium OC13S superkingdom:Bacteria; 16855.1992 21673.2805 7821.7886 27997.897 8949.8201 3247 5911.066 9226.0859 17636.3454 9540.2547 9982.125 161501.7187 15687.3725 8484.1385 9400.9524 6397.129 6397.129 21372.9902 7038.8209 10428.76815 15137.7699 25513.207 11568.2079 7988.779 4711.9137 26691.7567 17764.9677 19190.7661 6600.6402 7947.2423 3417.5803 28257.4564 325282684 amyA Carbon Cycling Carbon degradation Starch Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 3685.1001 6823.3269 334343547 tfda Organic Remediation Aromatics Chlorinated aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 7737.5745 20976.4616 11439.6505 8543.7307 51243.0077 70871.1016 7036.4103 19737.685 9176.1659 13475.4275 9627.8875 401009.1365 17458.5679 23544.4173 50699.372 27898.193 27898.193 8109.1671 12232.116 13474.6403 5709.6023 10515.2936 11656.8385 3972.2613 6233.1552 20563.7136 5163.3837 27148.7213 13373.7472 18890.3524 6658.9856 7629.4916 10379.6469 5010.134 6623.0557 88175145 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44656.302 3032.3702 6071.6624 10293.557 10112.0427 8405.5253 11871.0003 266299.5837 14747.428 18132.365 15177.487 8265.2629 8265.2629 25865.0001 15398.4933 7065.034 27019.7252 23528.5973 17624.1934 7620.2962 12240.0516 10488.8193 8190.3864 24584.0966 14861.3576 20024.3007 7899.4752 9263.3403 13993.1265 7842.2353 9634.5301 385669711 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 35652.4802 13136.6586 21028.5665 19184.7886 6057.4833 13650.314 17092.5831 22540.8143 16333.2389 60185.3449 35793.7384 350201.3051 9806.8443 17655.9286 99011.953 40370.6028 40370.6028 16073.0132 37046.4157 15755.4952 40057.6696 21415.0867 14050.8654 11422.4743 13974.4437 12132.7926 10305.1292 42830.3958 40555.2643 75445.8286 14839.2974 15418.8775 21437.463 8949.9882 40003.4256 338171589 catechol Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4536.9718 21557.8288 15029.714 37025.4098 4608.0971 7036.4985 6047.4248 6570.3133 4837.8722 9442.9745 3824.4639 197360.8626 7551.8621 8763.9353 4290.6183 20811.4852 20811.4852 5683.2424 12884.4317 10484.247 7522.298 8874.5007 5928.2402 8642.9595 10866.7221 16846.7273 3807.1029 16034.1967 7665.5318 10047.7318 4831.5016 9318.4208 9089.9221 3773.8101 13628.3146 37726834 dsra Sulfur sulfite reduction NA uncultured prokaryote 14397.5108 15506.2583 7915.7993 7632.3971 13824.0104 13441.4283 7301.7889 12573.7043 12636.2937 7231.3206 188962.5789 24556.6812 12631.3765 18247.3425 6038.5821 6038.5821 527274.9706 28855.372 12775.3789 148811.1905 19601.6567 19845.2458 25817.0363 9488.9476 20011.7737 20513.2718 26691.8985 12721.8577 22348.8566 11025.8847 8647.7974 10564.2903 12238.9454 22916.6358 260767132 Sir Sulfur sulfite reduction NA Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 5410.1562 12838.4967 6703.2674 21634.2286 22965.3582 7227.9705 7500.7517 2959.5769 198381.8813 6683.8155 6973.52 16910.6867 8697.5767 8697.5767 5151.9725 14262.8836 19311.5236 4713.9052 9232.4992 6754.7381 14946.4482 51913.7132 7492.1985 25419.0077 12141.9624 26440.1063 11889.8957 33558.6179 13054.5112 33863664 amyA Carbon Cycling Carbon degradation Starch Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8552.5685 15083.741 2449.2337 22470.8978 7067.7735 22491.449 6395.8461 2301.5674 6543.6211 5728.1689 388445805 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter sp. 116-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 29460.5951 16846.8321 41149.1259 31830.0362 49499.9641 17248.3037 14955.2556 23243.6975 23184.1727 11514.1757 605935.945 31290.2704 33032.9688 22686.7797 16085.1731 16085.1731 17521.3173 38420.3868 30258.9864 29863.3151 35363.2756 38903.4084 13590.371 13562.2441 37782.1269 15204.6564 60106.0007 28777.8026 37551.0205 15690.6872 17203.2953 23219.6405 14156.8432 45962.1601 86137506 TIM Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4466.6145 4200.4382 2311.9337 4145.8746 4924.1636 9952.8186 2529.3221 63313.1875 4613.607 7663.1643 6124.923 3356.8273 3356.8273 3464.9122 3545.3271 3218.9055 8542.1235 2457.5541 4645.893 4930.9592 8427.3724 3714.0883 31988.6318 2048.5191 220907036 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5394.9371 3278.7502 5707.7098 5029.2153 3333.287 3333.287 7432.1326 5246.5616 11293.9059 21171.0863 7049.3693 2969.8233 3535.1123 3697.9126 9674.8038 7004.5735 7345.3462 2287.5352 4043.3545 9383.4579 169618325 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 10038.6549 15418.2039 12685.3931 1953.6237 5757.2936 8867.3894 7728.4366 4667.3465 6066.9574 11174.4498 2797.0282 2797.0282 5378.6841 27603.6669 6722.2968 4530.6711 7993.2652 13141.5712 10878.2974 3795.5065 6484.6031 4663.2476 24189.5152 7652.8851 8233.936 3991.1702 6165.1526 10612.8001 8389.847 8026.1852 389577742 amyA Carbon Cycling Carbon degradation Starch Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 15992.4093 21934.7905 21352.2371 12636.4329 6449.6667 48525.9612 6116.7578 3259.7501 12163.6156 62723.4118 8687.34 205242.2443 17257.6927 17728.9125 8889.8284 5629.8867 5629.8867 8477.6444 20515.9927 11363.8467 13859.8863 13561.4312 11716.236 6288.4425 5990.3032 18423.4428 7882.021 19750.5421 20350.9262 30510.9595 6556.1901 10224.0287 8382.2382 7618.2767 17421.1268 338760139 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii GR64 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 13864.2123 38747.5921 5957.9111 13044.0197 11027.0194 11381.7233 6153.5464 9648.1168 4960.0366 9786.7234 11754.137 6820.897 334060.2561 15913.145 16983.2816 16481.6551 10907.8568 10907.8568 14882.1914 22486.7541 16520.3979 15766.3595 19454.8525 19437.1613 9609.8902 10802.1854 27150.5601 8059.8803 35418.14 17158.4604 25689.344 11643.7066 11440.2275 12107.9187 7303.7772 20952.2317 94314555 cysJ Sulfur Reduction NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 175606.0081 47634.1371 9604.9027 21105.0402 4682.726 6989.7923 4369.3097 4369.3097 13461.49 4556.4452 28712.5439 6677.0292 8203.2232 6422.3308 8318.3026 14486.7818 10432.6359 11326.8439 13809.3365 2564.8613 8711.9613 3209.0771 59445.2405 393766138 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 52496.9712 139498.5076 23610.599 24569.6396 15328.3312 206498.242 14837.7612 16243.5288 52244.8769 65939.8525 50289.705 2952893.97 25491.1064 18267.8187 40205.4189 62257.873 62257.873 19796.5617 83609.7443 69019.7907 37041.971 44349.7377 29252.3206 18099.9304 46922.7286 99027.2348 15171.5634 86337.8464 22795.3023 37559.2814 23235.1062 33533.931 63652.0635 33638.458 71038.9846 353211452 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 32438.8285 33817.0851 13861.5848 12574.225 4771.4876 18000.7028 35452.4337 69361.0354 120733.0628 67546.521 35868.7498 3363994.1621 27706.477 67898.7274 22192.4099 46423.1681 46423.1681 55308.0603 438217.5054 85680.8889 20961.0191 51048.6556 76516.3264 16827.158 22954.3564 30103.7561 41654.3072 51710.1208 41258.6218 66468.5773 20082.4896 72534.1104 43120.461 27680.8547 680588.7087 184185914 EF1a_Stramenopiles Other Phylogenetic NA Ditylum brightwellii superkingdom:Eukaryota;phylum:Bacillariophyta;class:Mediophyceae;order:Lithodesmiales;family:Lithodesmiaceae;genus:Ditylum; 47639.578 10033.606 8241.8583 16753.0651 30816.1695 8948.5725 13402.3937 13844.7098 24515.5574 372945.1391 16130.2808 23086.7286 23047.1878 68043.1287 68043.1287 13903.5275 39016.2686 15244.5937 47155.4313 31171.4196 15693.2502 32283.5366 15614.1861 17849.4355 50966.7978 44067.3185 23297.2901 41667.65 87169.8419 19684.6627 51985.6574 42333.4188 147030.5555 337740042 tktA Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 10154.1846 8788.4592 6112.3287 9983.5852 6727.2317 53920.8417 6673.4688 2820.834 24283.2826 9782.1873 6117.1265 195504.2608 150163.7388 10374.4379 8278.6096 8200.3102 8200.3102 4875.9014 23337.7577 12055.2309 31504.4891 24938.4966 6087.9075 2989.7139 6691.114 19606.5402 39993.4545 19514.9606 21590.1475 13973.2675 4816.3432 12124.3692 9706.7086 4218.9206 15234.4025 119481903 ara Carbon Cycling Carbon degradation Hemicellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 30084.4982 16345.6796 72377.3134 196160.9666 9198.8065 41500.8435 40889.6688 103859.6717 31062.8878 94332.6841 22507.0334 941348.3124 28623.4821 37323.6441 34913.3572 32296.5608 32296.5608 22659.8773 71939.4369 51439.9837 89332.7294 43600.2443 51557.7129 17547.0185 18351.3548 37726.7406 37742.4079 70110.2366 74227.9815 33332.1341 16006.291 32147.2163 24253.0941 19219.3517 31983.9625 27349338 linb Organic Remediation Pesticides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9340.1432 13688.0661 11353.024 12641.2452 12208.6011 15815.3774 6043.7499 11942.0849 11472.8326 10625.1547 185434.7044 9513.3595 7530.802 6801.9906 5667.1049 5667.1049 6904.6774 15283.1246 9417.1047 6486.2403 9290.8417 11046.5533 7020.2993 10143.6304 22682.5082 5976.7917 19641.8887 15055.8529 14856.6601 3168.8368 12595.5129 11656.0852 5660.4325 14623.5809 347756577 mer Metal Homeostasis Mercury Detoxification Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 7160.1277 5319.5391 6198.0573 2904.4355 8878.8363 7357.1257 7027.2416 119520.0798 29537.1918 10783.3895 18954.9007 3883.3574 3883.3574 5148.836 7179.6099 7686.5874 8340.5917 15377.4893 10516.1605 3073.9716 7516.8545 20320.8507 4363.228 10229.6049 10909.1692 11520.4304 4445.1377 3188.0743 9343.5345 7757.999 6680.7868 353188817 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 3867.9894 10551.3155 2892.1903 9098.37 3653.5072 2601.8256 3726.8312 4336.6312 3313.3993 2748.0178 83317002 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17319.0025 5356.8062 6317.5326 71728.1994 17094.7339 3330.5663 20984.0857 6470.6349 7468.3229 13676.1229 4888.0243 90036.8114 6827.577 12862.9216 33588.7044 4530.5361 4530.5361 6330.6926 12322.9862 16253.7656 10399.0924 27086.3106 5655.108 8526.5952 18995.3131 7340.7286 27874.2182 16448.2239 16133.7718 3478.6565 9689.4484 9328.0226 5917.4368 15404.0376 313682624 nifh Nitrogen Nitrogen fixation NA Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 16200.0621 5202.8736 35754.6051 3315.1836 3818.9286 6931.3145 4961.1892 4859.6552 5789.499 3482.9004 5221.4204 3135.5048 211957070 nitrilase Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 105757.6913 16940.1877 142292.0337 58992.3303 150638.0184 26312.3042 110807.6634 63238.2177 76010.6543 67879.9132 146697.5331 73507.9381 2824793.8747 117494.2633 127233.1942 352007.3151 114912.4389 114912.4389 77097.5574 149860.9335 92216.2876 298586.0211 191409.964 140545.0064 67636.6951 70122.9217 120734.4144 91900.5999 221777.0746 113591.6481 135003.7333 107924.5658 90921.0443 116761.3915 98541.5218 132486.7195 222152451 ppk Phosphorus Polyphosphate synthesis NA Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 5199.943 22694.6688 8060.6206 8647.3383 3519.5723 4964.9065 4521.3389 6237.5128 3378.4979 73746.2627 4601.5945 4889.5911 2415.2585 2415.2585 3466.6931 5840.5657 5908.8884 7419.1004 4583.5312 2724.2517 4210.5364 8947.4255 4514.5811 10418.6646 6637.6012 8616.3612 2568.5149 4654.4272 3103.5776 6018.1105 183176426 mer Metal Homeostasis Mercury Detoxification Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 241127.3498 666427.1945 224748.1701 151011.7844 343211.6715 393506.2684 174533.8743 430575.4914 172226.5539 140287.653 299161.5894 180190.7029 4520010.7831 194794.5658 296264.4997 718588.9362 255790.2229 255790.2229 204896.9536 264326.8699 135532.7666 156648.2635 300685.8465 128515.3437 162204.7039 173994.9954 306322.8233 269591.8374 389300.1742 202260.9756 341457.5713 135769.4498 157996.1076 138739.1988 88703.2838 1040468.0412 341925993 ppx Phosphorus Polyphosphate degradation NA Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 8144.5487 13555.5742 10509.1638 6045.7526 20494.2034 5802.1916 8238.9304 4734.9699 8866.7934 29348.2442 140050.0028 27644.9266 11353.3214 6805.454 14779.847 14779.847 5332.527 16343.2713 14354.2347 9054.6521 13440.1508 8602.0413 6835.3726 21954.8469 14407.0922 6527.3819 218521.2368 24717.7157 12199.2598 4755.9998 5510.3586 7991.3885 5385.9947 8980.5244 121495586 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21348.5534 7666.8652 17312.6673 8388.9254 11025.2744 15162.8444 12943.2773 10465.8969 16131.531 10043.1609 265082.3109 17923.2001 24711.9672 8775.5886 10953.0587 10953.0587 12381.5665 29349.821 18606.0847 19699.8667 33067.2368 20256.7503 9656.7457 13001.9671 28129.0617 8731.8271 33354.9093 23205.6268 22018.4989 11760.8812 31418.8458 28755.6268 10526.1175 20669.1765 294023802 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 18897.5539 12072.3105 14529.0939 11758.2741 10644.1142 17592.0931 15617.4244 36597.314 17101.3866 250493.2384 19805.9108 45848.7442 17022.6681 20664.5765 20664.5765 17963.7939 35863.3395 16132.0319 31298.4513 28155.5616 31318.1315 11143.1615 9420.0676 17856.7205 36571.5884 65505.8872 20474.3279 27398.7976 17522.3534 23470.7457 24667.5823 12220.2887 20680.4266 340841579 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 33062.1602 14234.2012 6816.7495 13508.3883 8677.7702 12849.7589 18041.1205 5468.2441 16785.8541 8951.1514 10699.954 153000.5062 11476.1658 27863.8624 6181.7822 5841.0278 5841.0278 8430.6311 32583.5859 12935.9143 121055.4634 11003.4862 25217.0427 39047.0333 19297.9588 20688.5713 51127.5097 19335.0881 25910.986 17700.19 12600.6821 12361.7126 8198.5914 4838.2653 8119.6603 70991849 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 380025.9479 9790.4439 14319.7994 10277.5996 10723.054 5249.7103 9889.515 8873.8901 25709.6457 215669.9905 32207.94 12470.9367 20115.6847 20115.6847 7458.3818 14031.6152 17599.7177 17020.4683 15785.9209 18299.4576 5619.3853 6055.1449 15291.5849 7067.1 26602.2419 26690.963 34446.2247 8953.7962 8765.6236 9882.0633 5951.8033 9238.6791 315276592 pula Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 6803.1117 7230.1631 5029.6915 7206.9997 8810.5229 4218.5031 2904.0716 4911.9973 10765.7061 2685.2853 125651.4446 6325.9058 9217.5488 5360.7623 3613.0421 3613.0421 4585.1897 11190.0164 7145.5002 8354.3242 10995.0388 12053.7987 3880.2638 2806.9088 10832.4538 3149.5188 14290.3317 7002.6426 9718.6507 3632.5316 4380.1545 5546.8966 3176.3611 8105.3691 260417202 pgk Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 35564.443 23141.5999 52172.6267 136724.0706 19019.9085 47032.9373 44011.446 24651.4558 29398.7979 29653.5875 28725.1425 558067.9732 21054.3395 48344.0058 47139.4842 40306.8447 40306.8447 17054.2043 39293.9574 24109.9039 18680.3669 54198.9108 244923.0313 13075.4302 19428.494 40024.166 24383.0671 76106.5721 30809.5042 28159.9064 11440.7052 54188.1018 40394.0691 22402.6972 29306.5128 111017537 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7261.124 102594.7154 18643.3154 3655.199 6805.3708 9766.8779 31142.3731 74239.24 14753.2915 12298.3042 27617.357 27617.357 4523.1373 14906.903 4774.0244 5796.4866 11637.4191 4160.978 9320.5771 28554.2382 10157.0502 6727.1336 50469.2772 8700.0717 46897.7843 4200.2072 9502.3539 16565.5046 2928.7058 11582.0397 50982452 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 94263.8931 74307.5193 14190.1695 182960.3537 28613.3461 23170.291 67969.7683 12375.0941 74002.9902 400257.7659 29390.112 996756.7807 214036.0116 47323.3126 64923.2076 43144.6034 43144.6034 66322.5003 71503.0418 37154.4651 25827.0933 61715.9421 29827.7264 31750.6604 50305.9249 111818.4476 52697.6308 153081.3797 149725.2316 68131.9284 61294.5158 32008.9117 69797.2323 37464.1945 29126.3712 302526901 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 49788.9846 29891.1528 37582.547 254901.8985 44107.7843 16119.7167 61821.2256 12703.5782 40008.1094 57310.7687 44020.1426 2345325.8455 78440.507 77982.3955 549074.5865 111912.8214 111912.8214 43667.1235 65507.4233 36697.0293 41125.381 162634.7029 62429.5281 34059.1515 40404.3642 75416.0679 24411.9989 85408.7595 80063.3457 77777.6921 23581.7235 35840.2329 74741.8469 39817.291 62607.316 256832951 amyA Carbon Cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 4533.4819 7087.1388 2276.4982 7483.1833 2869.7904 68101.8755 5446.8051 4593.799 2864.3369 2864.3369 6419.1849 3666.8543 10181.986 5709.4278 4584.4949 2582.1595 3362.26 3382.1377 2770.5563 66846469 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 4718.7689 30947.0287 9508.0374 14687.0182 5936.7847 3995.2467 5886.0903 3082.162 100554.0677 4480.8199 7023.3589 5868.5644 5833.9695 5833.9695 2771.1307 8495.8915 3651.2171 6214.0298 7018.3455 17267.1052 4214.2967 12499.2054 6330.1888 12030.3079 3471.8614 5498.0004 24262.8233 2538.367 6304.5513 145221759 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 6666.1894 4158.9287 13824.2732 4167.7207 3683.3274 4897.5212 5709.4752 5866.1786 4618.2803 198274.7569 6848.0963 7663.2701 6573.7731 5790.8948 5790.8948 13384.8217 17477.4504 7341.3188 5865.3833 26815.9555 11532.3928 4467.31 5055.7306 12187.0547 3709.9841 18271.2498 8939.1478 14522.3467 6667.9607 8969.2212 11865.1207 4746.7915 6975.6687 256831437 glucoamylase Carbon Cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 80027.8533 11207.3922 84018.2926 26928.6489 143476.624 10092.8939 160714.3621 66527.131 43033.2042 56303.2793 101069.6631 101477.269 1355538.4289 86132.0657 151559.3356 160186.2575 39097.5135 39097.5135 127434.7306 131832.0935 51566.4511 179440.8743 163394.3657 184909.1274 98845.2843 80241.3169 73086.5469 66104.5276 512796.9289 138381.6667 138442.1268 46998.5827 78482.9989 55094.2311 64314.3976 67673.0697 338534644 amyA Carbon Cycling Carbon degradation Starch Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 16375.0554 12977.0376 23353.6245 9490.5409 7636.591 9299.2506 14245.3598 272846.9217 9849.4187 12254.6748 18868.3961 7904.8449 7904.8449 28387.6875 36636.6413 13728.646 9443.8294 8042.6355 7043.0151 7236.8308 9046.9851 17567.5812 6584.08 45467.7943 71699.8517 18104.0386 13287.4464 11415.0388 30336.0253 9173.9527 5313.2234 184194753 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 11344.9318 48675.8731 16630.7668 8618.4901 5274.3357 6957.7848 7565.5991 25702.389 7822.913 12967.0397 10240.4439 200235.7648 50848.1903 25257.5399 30595.0535 9292.6403 9292.6403 5069.3454 23458.4562 13958.004 535391.4743 11362.6287 8725.4024 15276.9941 9190.5843 14033.5383 13652.6059 32335.3089 17436.0459 17815.5926 8040.3871 15961.0403 20211.4922 13269.5478 22966.8268 335419524 PRK Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 7881.0348 4318.3098 8930.8015 2856.6102 3959.3296 2467.9814 122821.7882 4871.6831 6854.968 9286.7646 9286.7646 3470.5039 7091.2704 6140.7126 17221.8332 2796.2694 2631.4516 9402.419 3896.893 11862.4152 8771.6446 6373.7233 3273.8594 4334.8555 5344.6468 2246.3599 11339.0491 238868031 terc Metal Homeostasis Tellurium Detoxification Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 19790.6677 11581.4682 15394.6498 17382.5155 8233.2424 12429.9968 13909.7241 7131.6806 12244.9574 15718.8282 7498.9424 324287.9104 23037.4695 16125.9491 14497.2165 7836.3369 7836.3369 10858.9043 18224.9653 14528.4393 16274.624 17816.4844 24678.05 8027.8569 7931.1682 17941.3636 8613.3101 24593.9016 7467.3572 15500.4445 8519.5048 9027.7318 9388.3743 7509.0828 22719.5506 121306155 chitinase Carbon Cycling Carbon degradation Chitin Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 4949.2123 6886.9609 5087.6018 6333.8737 153609.6422 5505.8369 6605.8304 2352.5573 2352.5573 6008.6621 8003.8547 5460.3869 5288.4449 5921.2366 5320.4243 2969.7179 3558.8616 9616.4004 4803.4742 14877.4037 7171.463 11357.3888 3640.6047 4211.7842 6209.5127 3820.7808 9066.0728 56419944 cysJ Sulfur Reduction NA Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 4854.2537 19466.8505 5581.6502 4502.7242 3075.368 2987.7516 4450.0398 2884.7946 5250.402 8612.028 3263.2401 3263.2401 7387.0711 6891.0063 7227.3892 2623.6992 7962.4014 7391.3702 3466.7684 24701.3182 7592.9107 11787.5598 2104.0916 3802.2221 5490.1552 1861.1228 190685337 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 4439.2787 5848.2595 9481.1155 3074.8209 2636.4077 3647.4655 5999.6397 8678.7102 63790.9517 5023.4637 5474.1112 4312.4363 16550.9759 16550.9759 17956.1055 11144.0289 5607.8762 5665.7749 10214.4089 2587.5989 3077.8034 5531.9062 14677.79 14827.4698 6330.1435 4914.2593 4523.6438 6944.4598 3145.0444 45368.6823 10722.2604 317132650 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 11762.0073 4435.0561 3597.2458 13799.7629 2692.4934 2692.4934 52157.5255 2781.4402 5612.7365 16478.903 5696.3252 146309237 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 59060.8367 20068.2173 237846158 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 175249.8204 32438.932 26351.0842 600692.9182 172033.5314 71396.5426 189566.7024 62674.6352 139219.9484 57867.5346 190531.4216 78780.8813 383108.4465 94017.8494 78367.6225 62980.2595 99529.8019 99529.8019 51584.3131 88533.8065 45786.887 57773.5654 135739.8335 148147.1687 36294.7324 72524.139 105603.9039 36067.3225 156959.1849 111933.0705 121126.612 26994.2074 104248.3317 96715.5678 90972.4125 58245.8596 84683825 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 16868.065 6980.0296 5276.7122 9804.1526 12490.4842 4650.9833 7676.8251 8130.1712 4462.3566 240959.4207 13857.3585 10379.4551 6104.9355 5156.8382 5156.8382 28514.2981 17370.5558 10201.0435 22432.5467 17193.0441 18896.1928 6913.8369 5824.2797 12625.4197 5255.7244 20266.4361 5951.9681 12729.4247 6731.3706 10347.0055 8224.8573 8989.4255 17783.736 110633343 FBPase Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 15593.248 14276.3051 128166.1442 4061.219 128113.509 5434.9139 5382.4479 11913.5124 13029.0644 27650.6282 12376.9533 124646.5948 19701.7994 7586.4894 10196.9053 77955.6411 77955.6411 5753.9624 22970.4611 7836.476 9295.048 12867.0895 7430.2392 13239.3002 10818.0484 9642.1098 22337.1217 26877.2105 15426.7922 18259.6117 19398.1905 11685.487 33162.0185 6413.595 8179.2091 307742876 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4400.7449 11226.1515 8527.4948 8671.8857 2688.5164 3715.6898 3935.6259 56784.636 6617.6224 13493.9995 3331.3691 3331.3691 3036.6821 5913.5461 3621.7071 5223.2222 5799.8338 2831.5796 7774.3022 2371.5609 10573.1605 5767.7559 8248.69 4414.2074 3133.9178 6357.8252 319413989 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 805729.011 68702.1216 90091.5325 269870.15 130342.6329 31397.3686 131360.1352 264444.8985 133890.7575 135396.9479 159873.8787 139788.1624 1688193.2534 309464.2164 95804.608 247590.5287 168140.0202 168140.0202 120265.6005 229643.8349 152368.3622 497695.4629 392963.7689 436871.8545 183876.9389 110818.4953 343728.0608 125248.4736 409191.2642 120012.3543 226430.3767 81198.4094 121987.9403 178881.5344 98573.1918 225578.3493 62512302 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20448.6216 9876.9012 15470.4705 19663.5383 16153.274 8798.0722 17119.2557 7582.5193 21916.9405 32072.0122 18450.9512 374640.4361 39954.8162 119716.8516 35746.868 16920.7139 16920.7139 79908.3036 76176.6407 30747.3661 16185.5049 30836.8314 20613.1901 7767.5521 34141.3315 33200.6306 31804.9077 172517.5439 32537.4306 28766.1965 9039.3313 13979.5883 20037.9024 13998.3775 40783.9409 283131323 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Streptococcus dysgalactiae subsp. equisimilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 4802.5974 3241.1101 3989.1815 3956.7569 2680.9231 68538.7667 4405.3544 2638.9364 9541.6798 5080.1001 4041.1151 8305.0212 4488.4561 2411.1413 2531.8498 6762.111 2544.6248 13889.6414 4646.0696 6777.1568 2668.159 3835.3804 3883.5543 2733.2831 5130.6581 87281302 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15933.7356 8593.0707 7833.222 11814.0543 71563.6532 17456.7481 30967.3483 15336.893 15024.3923 15792.9244 8963.0598 373019.5385 15340.8106 17392.5219 49946.969 15274.9423 15274.9423 6717.746 59057.3793 14470.561 15591.0544 57664.0809 14444.8793 6416.5776 10151.1798 17931.537 8752.4688 38675.882 22392.1178 26250.3703 9395.0233 14646.1442 11732.9588 8193.9578 14883.8927 387937724 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 86170.0864 33824.352 18429.9751 19529.8514 10516.0055 20488.945 11877.069 5440.5297 22739.4624 16669.6768 16461.7132 717804.2807 25608.5916 25206.7666 22561.4611 35602.8037 35602.8037 10377.4419 28282.4132 15000.6292 61274.4651 13638.9586 19997.9295 12467.4152 9426.6831 24222.3305 10258.6199 58675.9673 15947.4158 25945.9232 8890.1822 10714.0554 14060.9182 6553.5223 13926.4527 126729399 ben_bcla virulence NA NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 82959.5994 34883.7105 129979.847 72147.184 15582.9355 27594.3088 373828.7337 25865.3471 27649.6231 39045.7489 48080.9411 491954.7252 105412.5498 35409.0014 52364.3042 91015.7519 91015.7519 25506.8252 52537.6502 33606.326 35042.2157 233524.4033 67034.5846 34213.958 37237.7469 77408.959 39385.7829 175711.8439 48500.3047 58066.5475 45593.5268 35371.7035 112452.2627 23412.3935 75916.4023 73749330 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5708.8075 10488.187 13082.9248 16355.2163 3794.6006 5880.6502 4633.3246 15247.0787 67959.8435 4744.2927 5918.5041 9155.739 4981.0216 4981.0216 3818.36 12606.344 6105.2497 3975.2295 15894.1384 9516.6689 5280.0748 3287.4724 11260.5656 4525.9893 26883.0182 4644.484 12988.1204 3680.9496 8177.918 8889.4572 5523.8917 9448.3507 218989010 phenol_oxidase Carbon Cycling Carbon degradation Lignin Boletus edulis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Boletaceae;genus:Boletus; 20578.0435 12535.9976 275050.5057 8579.7475 13950.3952 6167.9609 9104.5126 11635.5535 10939.1677 10185.417 7628.3968 491394.9929 28022.9021 22232.5776 12857.3658 12663.8589 12663.8589 8442.4828 158087.8432 13886.9629 15517.1253 15655.946 16516.3693 12468.9451 6533.8472 21449.6248 11336.03 27597.3653 12852.53 22080.728 14598.6484 10117.027 11407.7744 9223.5646 15602.3735 398053895 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9374.6806 6075.2017 5665.8049 8503.8381 5573.4283 8230.2997 9960.9771 6093.8448 209857.5606 9835.4276 7706.0376 4259.9854 7607.9042 7607.9042 6482.1431 11580.2633 8312.0303 198532.8242 9468.076 11726.5634 4351.4875 5172.189 11641.9512 5342.3896 18132.398 9583.4038 16240.7421 5230.8446 5540.1758 9202.193 6084.212 12017.5527 302446497 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 132006.566 20741.1533 71680.5454 27265.6661 119994.6242 35095.086 16853.4428 35472.8421 7654.8161 12730 28051.5158 15736.3975 573610.2397 35298.1038 42156.672 35790.5234 36221.7897 36221.7897 14128.082 43880.0652 32879.5112 18031.8591 48710.9804 22950.7101 189078.6041 19749.8266 56112.9769 12264.6534 63369.5406 53383.1592 62205.4144 35705.1115 26779.5732 19906.559 9256.4274 16996.3592 169605831 rgl Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 6175.78695 5383.3919 6670.6748 11296.2055 3635.9905 4289.70745 2534.0717 4557.99055 6013.62175 4339.4336 104008.6098 7689.34845 6843.7889 3824.9635 4682.07805 4682.07805 3835.0708 9349.5239 5245.4551 6611.2816 5227.40695 11066.39395 2850.78785 2717.7112 8751.9357 4130.1652 12290.5098 5115.8596 7169.4356 3041.58195 3771.91065 5196.2637 3944.1417 9951.26315 299749838 exoglucanase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5152.2026 4161.3422 9265.6175 3354.03475 5739.0272 2896.1339 12411.8166 61699.8147 7243.9229 8502.9149 3792.8811 3835.9154 3835.9154 5975.4998 3501.6039 4301.9727 3996.2312 3574.5766 9278.7416 4344.4212 6171.86195 398834940 tfda Organic Remediation Aromatics Chlorinated aromatics Herbaspirillum sp. YR522 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 6148.8788 1417044.4035 6270.8832 12807.4719 11520.0209 6662.1744 5396.1884 4217.986 6988.1683 8586.7252 5048.7157 129904.1153 14444.2071 11188.8482 6216.9174 5301.7098 5301.7098 4597.2573 14915.4754 8775.1557 6802.3009 4626.5489 5206.1156 3427.6049 5524.2212 12264.9905 5028.5818 19462.3556 6994.913 9853.4371 4463.0301 7528.3294 6425.6198 6050.3707 8986.0274 87199889 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 70085.9086 30506.4241 48013.8543 42887.4455 10115.5121 18266.1603 74196.4395 23792.7806 20378.9576 54437.922 32634.0929 744581.7604 56286.2497 40888.0398 46412.0913 29488.9893 29488.9893 23054.2033 78523.5954 30958.9768 44967.4675 71690.3877 50010.7574 46478.9338 40760.5784 40148.0779 18874.3946 90169.9083 43604.8747 47282.0065 17360.673 32165.6503 22487.6487 17912.3544 48021.1889 165988040 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4209.2639 163963.7747 3763.897 4035.409 15394.4173 3743.8968 3351.6985 3351.6985 5598.4666 2366.1429 5195.3665 7504.4176 124111051 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 34101.1684 11333.9369 9802.4874 29769.532 93941.7654 5763.3558 10755.2983 23199.5457 14711.904 14659.6003 14493.7223 16583.2261 1482985.4421 34893.0075 25526.5122 42750.161 70137.5105 70137.5105 19680.8162 49471.4559 23416.6164 61839.9712 31766.4071 26316.0366 22575.0328 26412.6434 22125.3095 49370.908 66944.5599 28506.3929 43816.8918 16994.0562 21493.605 38928.3087 24211.7412 26230.7642 302468181 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 5043.0764 5875.7564 15376.4611 37725.7511 1801.2582 612174.4229 6908.0602 5691.9043 16702.972 237190.4702 5109.0971 12580.2445 28063.0859 9728.7991 9728.7991 3307.6354 14764.3552 4443.7239 8917.4874 4868.8724 11593.4423 3760.3413 8687.1169 10878.8869 4118.5058 14139.1361 4107.4794 16124.7847 5594.8866 6408.1709 5442.0676 4101.9843 5658.3253 404659283 nfsb_2 Organic Remediation Aromatics Nitoaromatics Sutterella wadsworthensis 2_1_59BFAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 6682.1853 2516.1969 8127.2486 2817.0321 79021.7757 5439.2691 3338.6874 3650.1823 3650.1823 3429.1896 3794.1214 7826.6877 19023.0763 12779.6957 3840.8911 4783.8435 5523.5598 111019788 mdld Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6141.6792 5144.7461 10731.5508 3427.5544 6364.8314 4368.8469 5581.6398 6510.5721 124224.248 7494.2965 8792.7407 3494.7842 3494.7842 2567.6246 5389.255 5302.8638 34613.2143 4180.584 7804.1511 4817.7643 11556.3173 16962.2702 7433.543 5452.1637 5791.8977 3567.9017 3792.7079 9039.3461 326551046 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 8688.5903 302974.2366 14245.3842 29344.7484 10139.4582 8541.9034 16712.0854 13231.299 4039.8943 98459.4711 5162.3122 5391.8851 7750.3639 19129.3932 19129.3932 8792.1195 6698.2922 15307.2937 10901.2276 3831.4154 6065.9633 143010.2939 351537.5073 12689.1056 10773.7126 13267.0624 4028.4563 4768.7901 4047.1561 2747.9257 9070.973 333939108 bend Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 11229.5541 5226.3773 4203.0103 2761.85385 4194.36645 3480.58695 5087.1755 6705.1833 9920.26855 121234.99625 7336.52435 4963.9406 3356.219 3356.219 3241.4496 10178.82515 7884.6312 7392.2191 26650.0474 9472.3485 4224.8527 3057.4824 8047.374 3316.68405 11954.39165 6184.06545 6697.5717 3768.9207 6559.7807 9225.94565 5085.27375 7015.0784 124257907 tutfdg Organic Remediation Aromatics BTEX and related aromatics Geobacter grbiciae superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 4882.7838 2551.1305 5188.5851 2848.5769 5701.0654 5682.4525 2964.8942 77613.226 8314.8781 3863.6447 4247.7266 6488.0099 6491.7754 5833.7506 6382.7853 5222.7812 4118.3373 6387.2135 3644.272 14018.8068 7397.7943 5515.4664 2485.2148 4068.8054 4670.7522 10954.6885 7410.9103 126718419 hbh Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 14694.1082 18397.7343 15308.4367 29745.8003 30764.1979 4927.5495 39734.1517 12122.9939 10355.5715 22412.9056 27163.7874 10002.3365 467952.2802 21819.5548 21525.8067 18116.753 11747.7355 11747.7355 12569.8486 26809.1722 23220.2372 21882.2525 28306.1078 33512.0971 12457.07 10419.712 29160.3648 9010.0291 47833.4089 21983.5773 26796.4663 10952.3037 15498.1362 14158.5556 12038.65 32730.4753 169125724 cda Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 5301.4461 79146.0908 16329.8522 2133.8842 2133.8842 4070.1865 4501.4014 7958.3961 3612.6223 13121.7717 7958.0794 7515.4529 73535201 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18891.3503 110984.5521 11169.3443 25161.3286 10303.8959 19027.1356 16020.3522 17040.0849 49347.5854 37557.3742 13621.1748 333941.0486 16969.9016 21309.7185 20647.4126 33048.2783 33048.2783 16163.1349 55424.5909 22601.0822 19080.835 24179.73 43190.8819 18931.2058 23693.2133 39306.7652 125659.6191 94886.1144 29881.7177 23205.4976 10587.9636 25962.2045 24464.4267 14359.5431 381590.9014 229610700 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 35464.5309 11298.5971 8200.3654 7022.2475 14077.5799 7587.0851 14633.9785 22141.9919 20327.2847 312298.3024 34127.2154 20605.4121 57486.7596 21098.9571 21098.9571 9186.9772 19227.5152 68338.9948 49918.9889 12462.1118 21035.4646 25159.2875 17017.8871 26290.6071 43894.3802 49371.4733 21296.4923 19163.8301 14428.7497 23656.932 22423.1072 23516.3993 33313.3938 198254859 dmdA Sulfur DMSP degradation NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 4273.9757 3546.6735 393702503 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 21285.2821 782883.212 3626.3142 3620.612 18236.4944 50541.5554 112178.146 44341.1783 57739.6562 36591.4601 325302078 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4578.3809 2698.3696 3218.9651 7932.2747 54511.9594 3773.6949 2542.9203 9142.2018 5752.967 3768.0373 4213.1951 3897.7791 2465.8182 6141.5459 8895.5008 4394.9361 5834.3498 1727.4174 4839.7852 2393.9749 5539.1005 6681676 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 14343.9134 9286.7934 4981.0383 48260.8822 6036.2473 20445.9674 11427.2395 8374.7403 17618.1226 16052.5876 234693.2891 9338.0034 25690.7298 11896.1123 11041.6156 11041.6156 11384.3461 24585.2818 18144.7302 9613.4105 22269.5218 9922.574 16083.3027 7297.6118 25016.8092 6162.32 41051.0163 23831.5723 38492.9495 17894.0685 10906.9911 17801.8599 5004.391 181667.2666 1256703 dxna Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3842.0533 5627.9099 5472.2809 3365.8676 2319.7132 4417.7347 4195.7231 4018.646 106717.4535 5865.3553 5620.8303 3498.0404 8467.3372 7100.1948 7640.6742 8744.1548 3869.7958 4274.0354 7497.6128 2754.07 9994.4389 7455.7089 2866.1222 4674.415 5795.3693 3865.1237 7781.7306 29466086 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38279.7101 130755.6693 52220.4642 15235.6236 5869.6296 23973.1734 20129.0815 43692.4041 24534.0478 46202.3738 22415.3244 752341.3286 30599.3011 49129.2106 34592.1545 21448.8881 21448.8881 20662.8938 56990.9419 29633.6448 45088.0215 52109.126 71641.254 25107.7786 26200.1242 36688.6747 21842.152 89597.5928 15756.7935 42086.6617 28447.5012 31493.9869 106450.8705 59642.7974 278692.848 126434012 catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 29219.5643 7744.1156 2494.2869 3219.1906 3942.6795 8766.9466 2545.9074 2545.9074 3278.8495 292085.6102 3727.5005 90421109 arylest Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 103529.0138 15337.9859 23621.2434 64562.7039 104706.9116 38720.8491 23256.5283 68957.8773 23526.0154 109744.4002 54273.6863 67803.4873 2192904.8556 150968.5012 106223.7624 434198.4742 60007.6014 60007.6014 46086.7054 79021.4017 28156.7769 62771.4597 483375.6903 133825.9555 32869.0845 67297.6797 130072.3342 75993.7441 151683.2861 69850.356 109869.8906 45860.3985 61489.8332 113419.0115 83935.2752 106997.9881 169117862 mer Metal Homeostasis Mercury Detoxification uncultured organism 242300.4242 221160.313 348368.2813 58738.387 73668.36 170214.2073 88936.012 210157.1599 139168.1419 255605.4279 736295.0591 190005.4446 7281679.6888 275494.1295 220387.3932 845702.6212 206074.9914 206074.9914 124472.8474 329904.5509 194567.3418 547026.1625 1246904.9628 391887.5111 155946.5278 139127.8281 179988.2461 227124.67 447618.1814 363237.4607 302514.2989 102259.3849 174213.9947 215403.5723 165155.7526 292966.7071 116122570 terc Metal Homeostasis Tellurium Detoxification Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 6283.2929 5499.7461 7577.8586 5783.1335 2375.3587 2469.5524 7499.459 7328.2792 3272.0758 233677.0686 8228.498 6417.9284 2840.089 2840.089 6117.538 9226.7602 8037.6206 6274.8892 9931.2982 7549.1206 3504.034 4014.253 11345.3321 3113.0874 13975.1146 5125.4142 12097.4992 3991.3034 5004.1023 6761.0953 3457.9227 8522.2854 60326846 tpha Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8040.2864 8085.9957 24414.8519 8134.9191 2245.7515 3512.9821 4733.1831 4827.4111 3516.7474 90047.7702 6447.4264 5450.5302 7578.3476 4585.1853 4585.1853 4262.7014 19388.1259 5442.3705 7311.3352 5390.1332 7329.816 3208.3488 4651.2351 13891.5698 3977.4218 140641.4043 6672.7571 9041.8055 3942.7386 5913.8644 5703.6548 3322.4161 6007.8763 60417318 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9269.4257 5659.0526 24313.2275 6417.2704 4273.011 2149.6681 5987.4332 7249.1889 3049.0547 174298.9804 5613.6576 5225.712 3817.5887 17359.1782 17359.1782 2890.2217 9779.1239 11874.6913 6929.619 9790.3999 11481.8583 5080.5213 2957.1064 13518.0327 5163.9654 14554.0897 6031.3907 9525.4055 5112.2582 5743.236 6807.0493 4294.0774 8671.6434 336325370 amyA Carbon Cycling Carbon degradation Starch Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 5269.9942 11768.8314 3166.3616 15412.1395 74322.235 2643.503 9371.7978 4149.9683 4272.4105 5614.3205 262078245 badh Organic Remediation Aromatics Other aromatics Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 77872.9775 16663.4593 30136.8317 49957.8507 38197.1441 32672.1396 113608.6661 97338.8803 25424.5653 54429.5956 79846.3784 59227.4287 1706387.2626 36362.9687 87730.4941 151120.8916 70016.1209 70016.1209 64410.0001 61681.0916 44229.024 227687.419 564025.453 64430.7828 56984.5243 34997.877 60787.2457 84759.9495 111335.0013 55893.4606 76051.8283 34807.5627 50411.918 53221.9015 29658.6595 32627.0388 339328975 vana Carbon Cycling Carbon degradation Vanillin/Lignin Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4776.5897 2044.5804 3144.7727 5823.6483 88308.0777 337636.4597 4340.7627 7004.8452 4700.2838 10976.7514 3120.9223 6081.4102 10272.9809 4796.7807 8147.823 1817.4171 3125.0093 5905.8515 151302176 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio sulfodismutans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8803.9177 5429.9057 7187.1953 9878.6223 11438.419 4455.8708 11424.9919 10733.4786 3432.397 92455.8156 10515.5535 3337.385 3337.385 5322.3236 11666.9355 5589.6268 7933.1506 12237.0691 7644.6694 4421.875 3293.9382 10726.9933 3176.5399 15383.5604 12240.3081 8881.4595 5083.7472 7375.3826 12351.2951 4155.0179 6864.4365 9864060 chnb Organic Remediation Other Hydrocarbons NA Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 5052.6439 7793.7709 4453.0448 11643.5924 2711.514 4781.3953 6436.8208 6436.8208 6787.4433 4019.2364 5711.8332 5044.3957 4364.1978 3034.3359 3132.0936 6611.3614 2355.8257 3297.839 3290.4366 2568.1616 2293079 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 22276.7518 273425.4577 10341.3388 12436.7829 8156.287 4775.7259 10662.6322 13041.0065 13929.167 186533.1791 37372.395 17782.818 38512.6884 6541.0008 6541.0008 13365.761 21168.4129 10659.7044 18698.9421 21086.4446 17814.075 7303.1183 10774.0053 8251.5104 4784.6202 19570.8889 19655.8598 14430.7458 5586.0369 8901.6677 9750.8457 21619.9229 13849.4071 422314021 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17388.804 33593.8742 6762.4514 50171.1494 56582.1289 8921.2485 8512.9189 11568.5295 14632.2536 8696.6583 17597.1525 187463.7327 7334.7626 32122.3864 23949.3661 18930.1384 18930.1384 9007.6571 15959.3267 12708.3984 39116.2458 20269.984 16277.4367 9089.2882 15338.8238 55005.2714 18799.121 25300.5345 16811.7649 24497.9004 24059.6724 10514.5477 45292.6844 10567.7503 19858.5829 169156487 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 79804.714 14420.8554 29958.9012 43113.2238 12761.6476 7155.727 13220.5301 30720.6694 43589.3198 34290.9211 52482.6531 83757.3127 539230.0687 44968.4183 152554.2502 80759.8755 47583.9142 47583.9142 64785.13 49407.1564 59905.0299 22458.1991 70730.5755 32055.6257 23618.8962 57284.8182 33552.5975 40507.5058 199745.6811 38652.4504 53658.1664 33194.0934 33720.1219 51487.1014 17445.7033 46037.2882 386383510 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 42409.9182 18081.6421 23750.6299 22282.1595 32396.6841 18219.6845 30359.4393 16697.6537 29083.3492 26558.1028 28628.2301 734821.9914 16028.8805 55759.3071 171520.7889 64207.9689 64207.9689 58217.5063 56013.2685 57735.5297 20885.2176 28922.8777 27836.7191 27067.8411 17410.008 12852.9404 27461.6577 77056.6001 33726.2754 25799.7682 43220.2558 32689.6595 95967.4477 24685.6951 74805.3064 134034468 mer Metal Homeostasis Mercury Detoxification Bradyrhizobium sp. Is-D302 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 34513.4005 13801.9171 47470.8124 38126.8411 29590.5271 17717.1041 70040.3993 212432.0599 59623.4454 30743.8672 70573.6973 32519.7341 718237.2835 48518.1278 47447.6837 71435.7629 22582.0188 22582.0188 17930.7693 45775.2205 88330.2649 869538.8299 83295.4177 64348.0392 425612.6664 32165.0228 35233.524 291293.7025 75748.3963 16499.9588 37919.3499 399950.1328 41330.9768 25311.0684 16452.7014 85727.6111 146310629 arylest Organic Remediation Aromatics Other aromatics Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 13231.5927 35391.7916 73472.4575 36368.0029 5971.1522 9164.0026 4054.2982 2568.7396 5430.674 13917.8141 3557.9084 710615.7022 6576.7412 8670.6919 3798.8374 3798.8374 15927.7192 11572.9179 4473.8477 46692.3389 6977.2868 4788.5195 4999.0529 6543.4118 3999.5892 10985.8119 6167.6805 8357.5517 3451.6042 6817.9344 6652.1911 3039.4738 223585910 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15080.756 17218.0858 8113.5188 13975.0132 6742.7036 5077.389 7950.5518 6013.3497 7801.6135 23340.2497 10575.1369 267882.6998 15818.7684 14540.5808 12096.589 7578.1194 7578.1194 6606.4813 37290.3306 9479.8503 52434.3843 14898.0775 7160.2923 13509.7635 9421.4471 26895.2753 9946.3939 24246.7778 10593.507 13223.5174 20673.1612 7618.2628 38485.6673 5288.5201 9826.7866 357601160 amyA Carbon Cycling Carbon degradation Starch Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 7964.9767 355542192 amyA Carbon Cycling Carbon degradation Starch Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 6930.3921 10539.8603 7099.8761 4566.9718 8012.3824 6742.1482 6112.0566 6668.621 158770.4754 11538.0601 16951.8233 5378.8262 7354.0549 7354.0549 6209.4506 11236.2782 6601.8607 13132.7536 9025.1214 6010.8228 4315.763 5630.6646 12930.5522 5143.8678 13453.472 8528.0698 12328.271 5573.1929 7639.3132 6893.3822 5490.5466 10983.9417 126249775 dsra Sulfur sulfite reduction NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 757160.5726 105512.4958 215419.2231 267502.4884 705492.541 1074223.3775 166660.1097 157290.7584 200385.0155 144579.1555 235750.7097 145887.8042 7721575.361 282008.957 360460.0838 311552.7607 207564.7291 207564.7291 178118.2707 189113.941 146559.8224 129679.3851 293750.9627 213774.8592 72295.9612 98420.3853 947286.6318 105486.1202 302217.471 199802.6317 245700.6578 77106.6087 119729.5965 131382.3064 85205.4838 248581.5465 344167831 terc Metal Homeostasis Tellurium Detoxification blood disease bacterium R229 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 3657.4593 6556.5274 5247.1582 17126.2941 5761.4377 6529.6082 10032.9252 11992.5844 17514.6693 8251.633 95117.5991 17275.2793 9071.2821 6116.2478 3014.6963 3014.6963 12854.4508 4004.1738 5678.6702 16364.722 18403.2419 26497.1824 4319.3509 14654.9615 12238.1326 11656.7379 5886.1306 5350.0302 6510.171 2266.0575 15363.7534 271966853 phytase Phosphorus Phytic acid hydrolysis NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 19559.7309 13982.6681 4364.3536 2099.5801 6488.0337 4808.2808 8710.2516 4533.3324 142887.0638 10033.3876 7246.0126 28008.4959 6950.1877 6950.1877 5662.5692 11571.5928 5523.0721 6302.2557 6147.9083 4918.3126 3213.7624 9289.6045 9110.4777 7658.9081 12418.6813 6682.1687 12681.2502 5336.1507 5635.1017 10383.6109 4996.5901 7822.2709 209486850 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8351.9346 3698.9846 3299.3719 2544.7571 2576.0771 4560.6965 7748.722 2403.0991 83607.5785 5223.5605 6747.027 2493.6427 2493.6427 7341.4494 8810.3533 4847.4543 7170.16 7118.577 9651.9293 3597.1286 3741.4595 7516.6716 2812.9878 17687.8452 46813.2147 12804.9007 5048.0903 3409.6687 5559.6266 4545.3431 5866.0823 60475978 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 37670.9954 38463.696 236023.4091 77608.0121 49189.3405 136124.7784 37322.3175 49607.2369 35963.5974 53846.8813 85632.4868 45667.8623 238451.9453 46454.6407 37678.4537 35893.0872 95974.8012 95974.8012 29051.8446 101344.8733 58798.8406 82248.0209 113590.3615 241872.8425 142965.2261 90542.0977 242569.2047 49877.865 100199.1511 45052.9089 56720.5887 46113.6572 95999.9457 92782.6589 50944.8802 125413.4319 91788891 arylest Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 49693.6695 648652.951 15208.4532 27181.4121 7093.1924 9669.4082 84776.5083 26288.1525 37274.6254 37700.0345 37887.1242 328584.7566 43058.058 77068.2626 34869.781 72691.0746 72691.0746 34614.8037 91456.0536 15749.5572 24952.7599 123657.8493 23807.902 32623.3333 28944.1514 33752.476 35805.5129 71896.1973 208847.0983 103599.9371 12566.2275 27125.4415 32969.0101 26903.2049 19481.3686 337749869 rgh Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 11196.5737 6129.4058 8100.1671 49709.1318 18333.4949 15191.6409 20578.295 9275.1564 8288.4773 11272.8948 9411.2182 145540.2428 25118.9179 11036.1768 13821.5588 11820.3113 11820.3113 12425.8435 16143.6932 8933.8687 14170.5634 7806.08 7377.716 9511.0429 9887.3587 20554.4192 19522.1149 21525.4505 12651.722 13566.6443 6672.0233 7957.5854 11408.2663 4380.2767 6594.6903 393723285 linb Organic Remediation Pesticides related compound NA Sphingomonas sp. PAMC 26605 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9946.5021 11405.3119 15783.5106 7601.8122 6025.5213 5966.189 6941.7092 8770.1421 5209.3347 162103.8407 9583.9025 33226.0363 6222.6556 5067.0905 5067.0905 7572.8078 14160.115 11719.2427 9195.5847 15430.5699 12038.6613 6323.5627 6759.2817 12419.6724 6643.4282 31853.1478 11915.7363 12788.8746 7221.8452 17984.7559 10752.1641 7224.0014 26873.7752 357029281 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 37154.2318 144571.5826 40701.5932 15517.5562 26159.2158 10677.2676 8940.3359 641797.9316 11091.9999 11587.8484 27377.1471 21769.192 457007.4219 41981.8296 36818.0385 78218.6242 16190.9737 16190.9737 21370.075 37314.9561 30578.5619 16957.8926 121443.3581 24222.4917 11080.5146 25040.9273 21676.7271 24273.4227 94041.7156 16812.1212 71564.7984 16309.9982 40012.6409 37959.9864 8428.2716 25658.2132 29832525 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 438804.0457 73711.713 308875.3828 675072.9799 3260493.9822 546734.8763 370908.2635 607881.5003 235724.9259 463956.4075 559431.5212 262977.7468 15112171.7214 670017.7035 549168.835 1252564.2493 643547.8386 643547.8386 452426.758 565302.5305 343123.252 357931.8961 404565.7653 697686.5947 299098.9623 350668.1582 803643.0068 256762.7514 1131835.5157 573509.0205 560333.153 286191.9186 367681.4017 365142.5922 246908.2857 968462.7714 350527427 alkk Organic Remediation Others NA Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 14769.7971 7010.9269 19577.8723 54887.6078 10510.7695 18763.4442 5946.8913 18540.6663 9583.6464 324836.1422 11716.2042 8758.989 11091.2914 8826.3662 8826.3662 5959.0286 21312.5616 12166.5854 11455.4284 20068.3057 7446.5622 8524.398 8770.2269 13777.9106 16029.2355 27106.5522 20485.8557 22653.5277 13069.4285 14555.7938 10501.3764 7817.9167 8756.2791 89033282 mer Metal Homeostasis Mercury Detoxification Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 66816.8927 13491.9252 9329.7841 5248.7473 23214.1551 36129.6629 12861.9051 10800.7962 15111.6254 57345.5676 5534953.7624 15494.0811 38685.6 16599.9585 19756.8521 19756.8521 10120.0658 36017.4008 15050.2438 35027.5795 31602.0004 9938.2402 15196.5536 26517.8716 15812.4182 15926.86 43085.3922 23288.512 25371.2474 14896.4353 20575.7105 30301.5934 9362.3671 13113.8327 398045262 trze Organic Remediation Herbicides related compound NA Caulobacter sp. AP07 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 29625.6224 175770.945 29499.469 16348.0555 24023.8725 8596.6422 18916.1237 9940.4012 21870.3016 16191.5009 19641.8042 490486.511 40581.2579 21398.6902 54021.387 17403.2209 17403.2209 11086.6431 26829.4501 10880.0023 26915.9963 13706.2976 11891.3432 8503.8859 24182.3151 27265.7698 26062.9886 29689.221 12569.5289 36866.5123 12756.8322 18118.1378 11906.4811 5385.1589 21894.0867 317508563 amyA Carbon Cycling Carbon degradation Starch Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 7266.1552 34697.1202 5255.144 8569.5919 4038.2425 4005.0683 24869.3161 4730.8753 155988.6623 7384.5752 7129.2039 7074.4666 7074.4666 10141.6938 11523.2268 6017.5822 6358.5977 6583.5299 4585.7011 13031.362 9405.6221 6790.9053 11363.8544 4794.1365 4874.5951 3696.6195 4834.0703 56709218 dehh109 Organic Remediation Chlorinated solvents NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 6976.9942 22583.802 1912.0666 3194.4298 5657.634 3479.6245 22950.2223 5331.9589 117726.9462 6352.5615 6646.0787 73628.1529 73628.1529 3993.8974 13985.185 8125.1693 8936.4414 13293.6667 6368.5362 3459.0563 3596.6566 12074.2165 15467.2841 14374.67 7513.1688 10857.3447 4054.0141 6656.89 9342.416 5910.9875 7945.3069 150835665 poba Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 4961.8614 2791.4091 5716.7391 2912.0769 7698.0501 3510.7066 6756.1753 5990.8657 4257.9431 2443.732 5416.5646 10142.4941 1928.6929 3696.0436 3659.6546 3693.4978 5435.3243 170738027 amie Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 24258.0049 10901.1586 60733.4206 21529.4047 27488.2126 21314.0806 24166.8949 31501.8436 49775.0453 69542.9125 87678.314 325391.3787 60827.7785 43411.9149 39567.1794 46477.6705 46477.6705 38719.5234 39430.5735 25125.8292 38697.5102 76034.7012 74323.0369 32992.3591 42537.7281 43369.2006 107563.1447 57560.4111 104442.9079 46563.0559 11666.6008 40550.4946 29401.0009 68522.7701 81852.8135 365792064 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20864.7046 19461.6687 17315.5637 41604.3326 12243.1631 12811.7167 6672.8243 8992.4035 12256.482 20869.8357 20330.5945 419659.8021 66144.5492 30338.8804 149300.9292 18263.206 18263.206 8314.4567 28054.0554 15158.8335 50913.0754 43299.7223 26099.183 13718.9643 15680.1823 34313.4122 11327.756 41192.4131 30456.659 27726.1876 7491.1588 17252.972 13680.6702 10210.3318 62242.113 112441755 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 17128.0654 7553.9049 460972.6555 3143.048 3772.5789 7182.2233 35068.5051 14884.4058 4787240.5887 7677.0871 11269.5513 46353.8445 45757.8602 45757.8602 5494.9592 13055.005 5975.2101 9801.1513 93975.3925 2337.2214 24022.867 26465.2041 4380.1761 183748.1875 7662.2388 11148.0819 4585.968 18798.2052 75199.7535 3818.3004 7180.0605 374667093 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 107284.0351 14084.4697 42557.9471 4432.9446 17918.4555 5923.682 9820.9 10467.2288 4027.641 11382.9866 26331.9708 16680.4663 116407.751 8121.8363 53477.499 16044.1196 9636.8177 9636.8177 8425.9987 22572.9568 13881.0399 43538.8507 38499.3663 21055.4241 8363.0163 6978.0691 13483.1241 15188.8161 48613.925 13494.2957 28721.6383 5190.5532 17885.3251 15192.1647 6837.4446 12446.6851 164455534 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 17980.0034 1844670.7461 7603.6537 32860.9428 8556.9136 8670.172 9891.5684 7680.8452 21258.2777 6610.2469 208274.1608 13254.334 11296.7595 6573.309 5877.1458 5877.1458 15117.7676 31453.5895 14584.5581 8375.085 13760.6889 12018.4365 5577.949 8944.433 15294.324 5286.1666 31433.9265 18714.6378 15328.9531 7874.2175 6459.6536 19099.5375 10861.7452 16069.3317 90022649 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 8846.0771 7310.7217 12231.4626 12634.5178 16738.8259 11084.3835 52430.7424 5598.5067 19872.3674 8038.9477 217952.9372 11551.0782 10270.9319 20357.6108 7463.6338 7463.6338 5371.0525 15209.5624 14385.7021 11463.2853 24942.8014 11247.432 5540.2628 5048.9297 9759.949 9116.5579 9416.7481 16228.9215 31316.9637 7762.4328 7581.5138 12070.437 4276.7847 98661.9679 115397177 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 32067.0681 40500.738 24220.2536 18940.8265 8681.8441 19625.8987 20131.156 63546.0477 16374.0716 49869.2224 21589.6405 385315.8025 31657.161 50507.794 32358.5684 20403.2526 20403.2526 42148.3854 47377.9537 25649.9189 29801.4535 44765.4073 140366.8487 15107.3333 14372.5511 31973.5718 22530.0044 52885.4446 54201.9215 32352.9178 14074.0289 24739.4552 30789.8489 16579.137 68834.5617 336030302 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 91019.9875 32843.3862 4637.5907 18269.6258 13376.1859 3983.1938 12928.8412 7296.9758 61060.9393 6434.5563 7172.9811 4046.9477 4249.0941 4249.0941 3273.3217 14859.4764 5138.559 4549.9974 5949.3501 6473.6071 3367.4719 6010.0194 12613.288 3543.1385 7334.0693 7673.2326 3644.5962 7571.8974 3386.9535 5056.6865 15654.1304 305858747 atza Organic Remediation Herbicides related compound NA Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 13140.8395 13223.9606 21150.5395 9013.1806 10897.4259 5908.0262 89404.8015 9802.2906 11475.1945 6428.0428 163924.9918 13218.4941 10651.6802 9244.4767 6046.4812 6046.4812 7286.837 17363.2395 13918.9612 17275.6456 17220.6534 12398.4733 5923.3499 6543.1128 20318.924 45246.1819 22120.3447 15225.1894 13396.4107 5219.8921 9732.6019 8205.0953 6776.9697 42054.9388 300776038 amyA Carbon Cycling Carbon degradation Starch Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 34147.8093 6643.7762 2636.8993 2859.7104 2074.9582 3181.6664 4077.6129 72591.3872 5844.6309 3970.7977 5178.8757 2803.755 2803.755 3337.7012 8507.911 4715.3182 5936.2075 5668.3176 8150.8597 2720.625 3350.1057 8939.9997 15799.8831 9236.4764 6590.2434 3167.6796 6518.4993 3196.7199 6823.1445 357935304 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 39683.4882 19237.8811 115471.3867 205675.1468 163877.1291 19232.7047 69160.2627 222091.6007 29596.3649 26013.673 48071.4188 975710.8096 46347.7543 62904.3323 139733.8796 114373.8078 114373.8078 24135.7721 61998.3802 78397.8256 16777.299 34135.3849 77108.5149 12414.4983 33904.1758 83838.7938 35042.0947 224766.0816 86276.6083 88158.3691 49021.304 48731.2488 51694.7622 19570.5113 26835.895 186468755 terc Metal Homeostasis Tellurium Detoxification Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 9405.9327 10177.2709 8169.6308 7351.0741 8180.5911 6859.5776 13447.3675 3384.1784 203341.44 61885.9883 8364.8257 3402.8984 3402.8984 5859.1495 17232.8802 12637.7299 9309.3361 16963.6281 11966.7598 10317.1482 6700.2817 11907.3709 7145.7914 19373.7525 11281.636 10723.4392 14330.0292 9772.5357 8374.9266 5235.7792 33041.4403 194292809 norb Nitrogen Denitrification NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 32006.5518 304497.7518 10382.1576 254112.292 10419.4261 10102.6213 27093.2097 15073.7309 9008.4352 12796.0111 17005.2466 612038.7231 19274.7092 32335.6131 35476.4101 34191.9143 34191.9143 10381.5171 135117.5024 21286.9737 12748.5975 28860.6001 11600.8848 8964.9714 16083.2491 79238.5776 29696.914 39592.937 17673.5496 26320.4484 10231.0239 22146.2422 25439.0137 12210.2982 24107.5412 383761942 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 33133.8528 8977.7857 23322.5396 28604.7666 10371.174 7245.4487 5454.3357 6133.4236 156098.006 6212.7495 22824.7294 17001.6069 15344.1441 15344.1441 15968.0773 7677.5797 5772.4245 2186.4666 7029.3299 15510.7283 14026.9307 11273.3448 11284.9023 12467.419 5928.5665 6932.4735 38710.4856 3093.7077 5775.0823 299794603 terc Metal Homeostasis Tellurium Detoxification Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 20714.7947 39604.4607 5124.3719 27778.8384 20131.915 8990.443 11169.3868 4187.4947 43063.2138 173571.6446 61872.6428 191171.3145 28834.9387 34111.3254 133651.6151 17080.9027 17080.9027 65691.4368 28513.5355 13572.8708 34532.4965 53461.1169 24481.2383 8346.24 29790.5621 13494.8049 8976.6095 50294.4778 29470.7762 15218.9544 21604.296 112870.1116 17071.9258 16072.9252 22182.5732 261345271 ppx Phosphorus Polyphosphate degradation NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 4621.2756 51894.3298 24247.0909 8242.1006 5046.0909 4602.8336 3602.4213 8969.7487 3913.1694 17131.0836 7245.9157 172260.5524 15860.2078 9406.7769 4250.4997 9073.977 9073.977 4055.0292 26170.0112 4948.3134 7222.5487 8676.468 10372.8516 6774.8106 23660.9375 8709.4329 7867.7097 17123.2121 7933.1426 12730.0449 3942.443 8361.1065 6454.801 5436.293 157679469 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12034.5508 2614.5656 3939.9437 5352.661 7584.9107 4250.108 4737.2369 24000.3338 8819.5526 2230.5885 3190.5533 33415987 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4301.1768 4755.9354 3343.4458 25084.9442 8185.4437 10637.0523 1939.6895 5679.354 4692.5363 6965.8501 3513.9923 4843.9794 3136.81 2740.6817 14128.3209 6308.9983 6617.2166 2281.3709 3065.7472 3490.1329 4669.373 78093594 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21423.4131 39815.764 11034.1449 34405.2369 6633.2197 14185.429 13053.2121 6778.3066 24106.0138 20275.8924 13170.1972 579980.1996 20813.8073 15302.7129 135767.1011 8389.6359 8389.6359 15521.4647 27581.49 18209.9227 33061.0808 22751.5386 77128.9882 9099.5795 10116.9819 23125.3478 12415.8424 65673.3957 28086.8748 25358.5397 18474.6482 12144.7063 14774.8168 12358.1038 34960.1715 198251141 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 3829.5996 2678.418 7602.3983 5667.1333 4297.7011 3981.882 6087.5915 2770.9576 2770.9576 18301.4863 3436.9194 10501.0967 2519.0968 2455.3714 8046.0558 3048.8485 16875.9005 6593.5024 2210.0214 6454.3416 4980.9312 116676.5133 11870.6599 300074001 ppx Phosphorus Polyphosphate degradation NA Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 182285.2879 35814.8581 131804.0751 565789.433 299541.4143 110725.4296 110790.9469 138549.0134 94710.251 97481.0358 158024.196 98035.1809 77991.3764 132134.6356 117380.2362 146770.923 129064.2796 129064.2796 100165.8303 221762.2567 136510.649 172616.6555 249110.8622 226886.0994 108984.7057 92120.6426 149118.3819 118849.7389 259303.7021 175716.5059 216381.1575 153713.6378 155918.9108 134454.8546 111977.2475 264190.5929 304395373 trze Organic Remediation Herbicides related compound NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 13660.4131 9779.3978 190849.2085 24086.311 6710.3899 7870.2182 5679.7922 10339.5597 12300.2823 8506.6059 232485.8844 9342.3775 12800.0464 6324.4498 4259.0315 4259.0315 6911.467 27361.8783 15291.2134 19301.0447 19064.5161 22550.7076 5189.8136 20273.3901 20168.02 7260.8795 51207.4478 22546.0404 27545.6904 7164.7806 12687.3765 8609.8108 12867.1843 29451.6901 300785091 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 40764.6561 21602.1363 691926.4547 39889.9252 24447.1306 32738.4531 344406.6459 23712.9464 46009.7477 29497.9654 29140.5031 1068916.599 35174.2098 36746.2352 49538.4796 38469.7304 38469.7304 13548.273 38947.5241 18187.4577 17187.6864 46352.0545 19136.9392 11679.0759 16166.9467 31231.8192 17238.4034 58387.296 21800.632 48290.5241 32359.2272 21268.5766 19730.5338 19262.6349 64352.9155 3660497 xylanase Carbon Cycling Carbon degradation Hemicellulose Claviceps purpurea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 20638.0511 5977.5966 4790.0053 5785.2769 13467.4096 10503.8542 11075.4635 7619.3872 9785.7261 7715.7045 1045457.3573 9966.9036 12757.3409 11357.7013 10728.428 10728.428 6028.5186 16664.5047 13986.4437 26274.0548 38162.0563 12093.4198 8845.6655 8747.834 19063.2427 5177.3944 24513.5763 14234.7694 20992.925 6046.5015 7825.2981 8403.4214 5096.8165 14816.6799 71557272 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 5429.9219 18539.9577 2529.5555 3096.0347 3798.7317 2864.6959 79107.6049 2290.7595 2290.7595 5944.2317 8325.638 4410.2675 9446.1711 24890.8715 5705.3101 2524.2544 2590.1655 10866.5637 6330.6085 3377.4762 4029.2748 3961.0955 3721.5027 6447.3253 145304821 exochitinase Carbon Cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 22641.8427 9674.2909 12407.853 19069.9265 17339.8874 14138.9026 13923.1252 116327.5128 22137.893 27509.4038 267016.4575 1541696.2024 26842.8452 37163.535 32638.7002 21273.4728 21273.4728 22949.9598 35134.9517 32849.7106 38806.3829 12109.6291 19231.1624 10902.7212 16545.5845 103516.7324 11420.331 164325.1306 37767.3227 25695.3164 10380.1598 23339.3356 34328.2468 9577.1778 31555.0911 229377976 FBPase Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 12704.8503 6435.8604 44895.9638 48686.1751 22486.1509 2832.2216 17994.8105 7450.9519 38497.7205 23911.9581 18176.2547 464898.035 47355.423 47472.1645 60937.8359 34242.951 34242.951 5510.6414 22595.8952 14946.4498 10526.0438 8870.972 6825.3659 6723.8615 19680.8619 30272.1724 129089.5343 23856.3216 27252.1753 22510.7505 7408.4804 8337.7486 14328.2598 9740.0663 6795.6326 145231208 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9350.6137 562077.0251 35337.6939 35174.2829 6296.5221 4727.891 5415.7965 5769.4326 13446.2697 4964.151 97764.2778 7152.1376 19079.1071 15845.7278 6658.3125 6658.3125 5180.9885 10809.756 7267.5941 5738.8745 50314.8055 13507.2121 4411.8671 4541.9053 13320.2704 9826.6251 17653.7328 8160.1657 11528.4895 6298.6268 5298.9025 6309.4687 3283.0001 9073.3512 302192867 cysJ Sulfur Reduction NA Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 123581.042 233791.1919 385920.2824 159298.1617 44219.8916 26029.1629 122653.1823 54173.9702 40083.6729 27601.0375 41010.3029 67567.2822 970901.5074 46791.2864 50562.8421 96056.152 64060.3171 64060.3171 23906.4566 89966.8456 54911.3488 128272.6155 80048.028 27172.2991 33128.849 77784.8957 49174.472 47398.3066 173754.5368 43821.9521 95401.3429 25427.4681 50802.0277 72721.0628 36551.6331 44071.0058 242120818 nifh Nitrogen Nitrogen fixation NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 10487.6395 8184.6139 2195.165 2091.3568 2091.3568 3473.5213 2196.9234 2680.3363 3500.9082 3114.2914 2849.4799 90954591 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4584.619 3339.6378 7738.3412 6787.1176 340774176 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 18035.8577 12522.6622 9051.1688 19168.0593 6384.4071 17100.1811 101204.8242 14835.8513 24261.6107 29505.1 13484.5451 227951.1281 22283.416 21829.8875 44312.2866 40392.5397 40392.5397 17245.3932 34462.9972 20425.7979 80547.8868 25821.9345 20424.3516 12442.1855 10262.5541 26851.943 14030.3523 42694.3954 13572.6709 30253.2806 12673.0623 10193.9375 15609.3914 13775.0918 26826.0999 209883189 arsc Metal Homeostasis Arsenic Detoxification Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 9362.7113 396267.4815 9758.1944 5029.3363 4482.4122 2802.1196 7335.5643 8368.6073 8209.3364 6489.8103 27134.6668 81950.7056 10038.0535 10038.0535 7561.2343 13627.1703 6720.9724 6659.3867 17469.9942 5047.9886 10132.9738 15893.9026 11708.0176 5104.726 20324.1986 11304.8676 19130.7704 4319.9488 21264.2607 17397.4325 23728.2031 18344.0381 238632213 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 3953.44 21065.4814 56479.0848 35164.4137 3540.3756 13488.7628 6695.8099 8615.1596 7522.4359 215276.0623 12493.6636 89965.4081 20550.659 11612.1689 11612.1689 9543.8491 13984.3509 13620.4099 6272.7257 8763.9475 2686.3828 9471.7047 33806.8526 7455.6335 38168.1943 33035.9932 33961.9595 10438.9433 13201.9327 10159.1401 11318.2971 31146.8509 309250490 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Bifidobacterium bifidum S17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 11070.9001 17555.4161 11449.791 24819.6175 10343.0363 14831.6995 14940.4673 322090.9057 12853.97 9569.8948 3294.9002 3294.9002 7432.3687 16328.2704 16929.2236 30823.8017 19396.1687 20204.6319 6335.8337 7658.9691 14406.6857 12675.5631 30121.2856 14784.438 13760.3401 7434.0052 12472.8948 13261.7102 7270.6934 11125.3337 40746774 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8569.1914 9711.96 5252.9378 15144.901 8526.9527 9462.1732 7687.114 4269.2736 5221.7237 13511.9452 8879.1683 201420.6694 16836.4935 10402.2078 7092.2913 6067.1468 6067.1468 5713.4403 15633.1214 9664.946 5348.5345 9927.924 11144.8784 8932.9816 6136.4727 12509.6469 10849.9516 22274.7942 16234.0213 13372.6248 9291.1336 7311.2755 12145.2183 5698.5501 11586.8006 291612486 tktA Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7680.3364 13558.5338 5373.1379 9008.6879 2065.9784 6144.5838 2986.0989 5479.0517 7603.4077 4066.322 176554.5419 9907.3698 10197.688 5863.2675 10820.9821 10820.9821 7754.8204 16734.4516 9975.4119 20476.0374 34312.0097 13206.9267 4820.523 10830.374 7727.1191 12084.873 28772.8247 5809.1952 10930.7003 4359.6224 7122.4715 9598.4963 9968.2734 13576.0095 164456040 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7032.5942 10505.2663 4922.6113 7420.2331 27079.3439 3472.5712 4930.3415 4711.7872 5270.9106 5270.9106 6680.2001 5849.9728 135876.2785 4547.1998 8157.9775 2353.9297 6587.9773 11231.3467 20296.0936 7452.7836 2582.9755 3137.2579 3950.881 2489.8525 9709.1931 182382486 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13408.9884 7796.8864 29255.5055 9853.6006 5236.1465 7880.8887 3240.5106 7098.1383 6212.1236 11914.4485 184264.2968 10718.2501 14420.1259 12964.1349 13497.4114 13497.4114 5321.001 14439.7836 11195.626 10806.6439 4725.3674 7069.9448 10543.2821 5683.2858 28882.4145 4635.2992 20064.0089 11319.5376 18772.6209 5862.9622 11294.0604 19803.7274 4514.5435 9223.3974 365850635 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 10638.1595 191018.6142 7918.7502 13114.9556 17935.8547 6600.9875 8878.6078 57694.8601 28438.965 309231.9404 9008.7467 71858.407 21689.2367 8875.3187 8875.3187 14780.4789 21667.9862 12090.6604 32425.7344 21915.5185 21048.2227 8032.0003 13603.031 12279.3196 11454.5539 30680.2088 27306.5239 13447.3949 10747.4824 14718.395 8454.3148 89604.2036 17039.3806 242218040 glucoamylase Carbon Cycling Carbon degradation Starch Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9251.8598 3609.9126 5834.4715 5059.0953 11350.0291 104253.5092 10430.6504 36906.8416 4901.4763 2409.739 3654.293 8956.8281 3749.5453 6713.2287 3712.1008 2728.3209 6786.9019 26278866 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 70886.8991 108200.1071 68463.3567 35884.4742 7085.0612 8639.911 14187.918 25711.9094 34904.3093 48632.9183 336239.1861 34711.2565 1063141.0946 46589.9993 37547.1241 35929.6989 140275.6463 140275.6463 32533.8576 74190.385 42427.0582 73459.5631 83888.4325 43194.5114 27688.3911 29067.3706 40801.8137 22247.614 79532.3895 48189.4159 69013.0105 23756.9987 401464.6307 63209.5983 30633.5983 64723.2032 164455786 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5904.1653 61860.8049 13236.7902 5614.5513 7444.5944 2907.865 4267.7821 4230.2179 10249.0821 145216.1554 3573.4623 9388.0885 4438.8377 7604.6547 7604.6547 2886.66 9480.4457 123783.4101 50744.7995 5184.3822 2988.6949 4782.1626 6043.2832 3823.2681 20027.2762 6299.6118 7038.9834 3508.5696 5414.2074 5456.5096 2985.472 4836.042 334143188 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalimicrobium cyclicum ALM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 4914.852 2893.6215 9863.9993 6074.7385 36473.2008 4095.7839 269219357 chitinase Carbon Cycling Carbon degradation Chitin Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 121946.4995 121930.071 146193.6818 224315.9111 195142.3089 61241.6589 136332.9319 131368.5933 99056.7096 149038.1047 236620.6231 102647.2174 2292751.6339 199993.2281 212636.5137 702475.6368 158222.6944 158222.6944 124671.5535 170689.4575 138502.8267 162694.3494 126518.7874 126904.2478 96350.6194 91721.6979 144401.7333 81234.9035 232238.5305 202454.9922 166940.4391 71218.2941 103676.2842 170628.4902 230297.5144 136627.9664 225041240 amyA Carbon Cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 58574.9781 21432.6336 7987.7021 87336.0489 10769.4536 5701.6347 27425.221 14154.3254 25948.2346 113646.7509 42356.147 697942.36 28255.9714 73959.1858 71724.4773 31628.4041 31628.4041 14216.6937 46579.7938 20737.4299 59092.6224 33509.5247 24653.0058 14508.5312 40050.2844 37357.3486 59528.5879 100389.2318 44316.4033 63834.4302 15958.4575 24488.1765 30878.7448 14875.9682 376168.8819 68536269 gdh Nitrogen Ammonification NA Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 5442.2051 7007.6526 4021.471 2213.7464 2464.7631 2867.7011 2583.3298 3179.2012 4126.4163 5680.074 4771.2936 4771.2936 2832.5667 6420.0718 5953.0731 5649.5218 4131.4788 8590.4348 5987.8278 13283.6758 6421.55 9278.2373 4189.5559 4614.7793 4850.6898 3212.8612 6698.8248 46240688 pcag Organic Remediation Aromatics Other aromatics bacterium SB2 superkingdom:Bacteria; 5994.8923 4320.8607 4254.9886 3042.8781 2399.6834 3313.1872 3679.7959 89863.0099 5010.511 5406.5207 3188.7736 7170.5059 5590.5029 5410.1153 6009.4536 2436.524 8076.6234 2407.6881 9187.5937 6727.2204 7878.1637 3648.3757 3051.6704 3394.6257 3108.4696 7654.1473 109632247 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17933.9921 8351.6566 7029.5477 27646.0579 9009.7025 26123.5362 7498.5662 5661.5294 15359.5135 43176.4954 169497.02 12834.5639 5497.4333 20960.7806 6308.375 6308.375 7479.7839 23341.7796 13428.0311 10584.6199 25946.6406 50084.3499 8052.4521 6593.5398 11205.9389 15698.7128 27513.7019 22165.957 18638.392 8450.7949 15155.532 14802.7065 11713.2892 54939.2306 359787977 poba Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 6124.755 5359.7469 2401.3516 2235.2729 3864.8723 16306.6114 3682.7 2137.7506 5069.704 2604.5086 3117.4435 10824.2687 29510.5431 408788914 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium lupini HPC(L) superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium lupini; 5577.1817 6873.0777 10144.2811 2663.4887 6150.7545 5217.3943 6071.4446 3734.5108 113133.9045 11666.723 8244.2461 3649.2508 3649.2508 2949.6525 9845.9619 8019.5733 7646.7879 8571.287 4027.6102 5945.6148 4277.9127 7385.257 3454.9614 12428.4365 5468.658 8551.0724 2930.4898 5305.2004 4537.8339 4014.9349 6325.6402 343428886 nagg Organic Remediation Aromatics Aromatic carboxylic acid Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 52904.0808 13921.496 55113.8359 20996.2193 36722.0681 19603.4169 185044.0534 15221.227 30105.8487 16328.6906 27162.0225 27478.0584 1131724.7321 34858.1789 25173.3202 32599.3831 18686.2685 18686.2685 15609.6499 37561.2702 21171.9261 35198.0626 23046.2789 47221.0288 14414.8451 15599.2987 30582.1503 20502.4527 83005.903 37337.2134 31265.1491 13820.1417 27631.8063 17373.4783 13378.1832 25919.1149 378784171 tfth Organic Remediation Aromatics Chlorinated aromatics Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 107247.9462 12623.8182 80041.3049 9089.6194 16186.8098 158475.6643 58850.9955 49634.5034 31703.5018 29072.7328 28800.8798 547914.0818 16820.8887 37311.0058 36023.0423 15401.9305 15401.9305 14646.5494 32549.9874 23361.002 30090.3443 21888.8903 49145.731 28748.9989 41651.3256 123854.3055 23508.4817 106290.7745 35543.8829 28919.8646 49335.0065 39457.3712 36329.1886 20882.9432 34246.4942 317123613 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 145524.5656 28585.7643 281926.9217 25911.4737 52130.6513 13315.02 23479.1405 30013.3781 46168.3225 27032.1286 33453.3634 32965.7462 789203.4338 55707.2993 121364.1209 51424.7235 32259.8026 32259.8026 36390.8801 69001.0856 32692.071 75509.8059 579736.9399 57699.4241 28321.5463 27670.9903 58115.4113 21880.9718 78633.2528 27096.9587 77618.9189 25963.1298 42009.5668 60738.9345 20235.9089 34863.5079 94471279 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17021.3772 8474.7603 11438.761 32928.8934 8127.946 28206.6021 10236.9458 8824.6304 19756.2766 20486.3948 12593.8353 227818.8361 14586.1992 18900.8958 13138.2347 13080.888 13080.888 13698.8178 23038.8982 16572.829 16836.6255 31052.2896 15343.0163 10182.7944 9340.1276 20906.5542 9549.5417 53482.2378 30665.2094 30124.1921 12018.4934 15463.5257 13244.4066 9476.2558 20547.9429 320094215 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 6517.1184 4393.2029 18860.0208 6332.1814 5207.0209 4176.7108 4907.9243 6610.231 34389.1869 5994.2214 5994.2214 2772.0017 7387.7925 6754.6968 5308.6414 8865.9919 4186.0535 5277.9318 10309.3409 7246.1982 28749.3768 9242.9472 9144.6507 9142.9503 5470.9981 6038.8719 3628.6626 6190.6917 359775988 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 14723.144 7044.6811 16090.5811 3209.6527 22890.469 19403.3302 10976.5643 9974.9005 297818.2159 5127.916 9546.4357 9536.0026 3669.5949 3669.5949 3426.2559 9366.2476 9115.5527 12475.1794 43205.8133 4002.7109 17821.2635 5036.6291 7795.6738 4153.8553 23327.4777 11982.4024 10105.9225 6099.8387 10169.358 10691.6551 2840.5316 8854.7464 353348129 xyla Carbon Cycling Carbon degradation Hemicellulose Alistipes indistinctus YIT 12060 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 6314.6003 7783.1445 5198.0208 9218.7049 3400.776 3848.8648 6372.2396 3586.5846 3918.6994 3155.8125 5913.1773 3370.5645 2937.7436 2937.7436 4304.7222 10474.2621 5708.78 7062.0579 10874.6437 17550.4005 14005.132 4413.7262 10613.7475 3124.8395 16685.4667 7418.5794 11030.2668 3004.5569 4055.072 10700.308 3329.781 6970.1817 325299894 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 4062.6318 10284.6639 3524.8015 3155.4533 3603.5158 2357.4116 61495.5219 6010.8288 3664.5892 7035.0407 3669.8608 3669.8608 5644.2412 2814.0961 7839.7055 15495.719 4304.7246 6082.3472 1950.9267 3036.8908 363712066 terc Metal Homeostasis Tellurium Detoxification Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 11551.546 15422.339 4172.1885 184208.3608 5959.5707 24077.9178 6367.3236 129950.6903 8383.4762 15536.0735 11350.218 10727.8259 10727.8259 29304.2243 15475.2722 26134.9262 85461.0903 10881.6334 4844.0789 12984.7091 19206.4671 9745.4759 22406.9794 23645.0527 21169.1955 10843.9137 6410.9651 13384.7876 5558.7602 4662.1354 254521343 B_lactamase_A Virulence Antibiotic resistance Degradation Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 10704.1727 6283.4678 15430.197 11340.6188 10241.3547 8755.3135 10557.722 22323.4852 8407.4411 335335.7441 13698.5888 11869.4128 8593.1846 16316.3722 16316.3722 9328.9533 28284.0401 15123.9114 18853.8297 23833.0569 15407.1974 10143.3915 9786.8101 17184.9471 11045.8116 31065.9863 12974.0093 20069.9177 14977.3294 14586.4497 10928.7059 8013.6751 19691.0363 115524690 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 14461.3677 19141.3822 16668.2803 14045.2205 12761.9574 15595.937 44882.4663 15203.4811 7354.561 25975.6452 10170.3537 99005.8181 10379.3106 14342.7219 24041.9734 9997.1671 9997.1671 8280.371 26685.0164 12227.3657 26756.9031 21046.6844 10329.3856 7991.4358 10876.9181 15679.8972 18869.5852 56910.9652 16146.4196 21032.8626 7986.8815 19844.455 12088.342 11573.7965 10682.2043 214042875 ben_bcla virulence NA NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6824.5245 27027.7937 9794.7706 9507.3418 3127.0974 3533.3527 2120.0043 6102.926 6717.2652 2639.2666 176946.8699 7173.2287 7305.9495 3384.4795 3384.4795 5202.6534 10824.2076 6589.5617 6610.8877 8011.9637 9097.2776 2305.9433 5532.7206 8991.942 11289.8877 30867.1674 6281.4199 10441.7194 3401.571 7395.9087 6386.6093 2711.8004 9000.148 364562164 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 9112.0388 3416.5311 3299.5202 161695.1152 4185.6568 2794.6902 2794.6902 8196.086 4836.2574 4431.49 6125.7003 33839.8559 6520.6925 9084.8628 4783.6599 6833.5154 3249.5693 4410.4779 2328.1694 6332.7286 71848368 soxY Sulfur Sulfur Oxidation NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 37996.3838 24459.4876 18002.9766 14574.1162 11934.5207 36731.3736 44560.2623 21433.7643 29415.5276 38571.2904 417265.361 21203.0243 23321.9302 26855.5068 25452.4521 25452.4521 22084.5218 56267.9355 26391.6592 22331.135 46270.3331 24421.5029 26709.6553 26651.9319 52781.0038 35594.9939 91983.5111 24880.6386 36242.7947 28779.7742 27992.6362 83052.4525 88483.4311 18086.9719 367471631 sqr Sulfur Sulfide Oxidation NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 23004.3701 12277.4244 13480.7792 9438.2999 14251.5677 22349.8519 14662.7843 6974.7459 13246.5344 18548.4224 15471.8583 480177.5705 17587.3445 16638.6132 21811.6066 8281.4922 8281.4922 7972.0872 27835.0854 11759.4844 35253.8154 14042.8088 30556.817 11117.3654 11401.8471 15412.4803 8660.2774 29749.0133 17513.9033 35175.2974 8129.801 10378.6431 11570.62 15916.3203 23328.4337 113200815 catechol_b Organic Remediation Aromatics Other aromatics Sphingomonas sp. C230 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8304.6241 22161.2842 12864.3226 15547.2355 4601.91 5832.7506 4291.2574 7033.9707 2706.8732 83560.9209 7585.7828 7426.1227 2601.2544 2601.2544 4588.3489 13328.0675 8225.2755 7525.5634 5794.1871 9594.2962 5393.4854 9216.6455 4153.453 15407.5044 11853.0348 10214.3803 4288.4695 5985.6798 4474.7723 3523.3663 30036.5338 296129589 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 12893.5222 16080.5762 38136.7717 3730.9919 5949.3097 13944.8603 193216.2802 4146.7117 7418.2352 4136.8821 4136.8821 2548.8475 10385.0398 5244.6599 3816.752 8230.3568 7031.6266 4473.8294 2815.1846 7786.0171 1946.8391 14842.7978 4647.2905 7249.6017 3075.9634 4671.6178 4792.7607 3245.2901 6332.9908 284073146 actin_Viridiplantae Other Phylogenetic NA Siphonocladus tropicus superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Ulvophyceae;order:Cladophorales;family:Siphonocladaceae;genus:Siphonocladus; 8293.644 26212.6596 4997.4094 2465.4382 14325.7913 11273.6852 19748.8302 6141.933 233953.6833 9944.7359 8689.8428 15496.3279 4790.9631 4790.9631 5154.9781 33775.7011 6129.9685 4263.1704 10038.1783 4862.4832 12546.6423 11766.5939 9444.4273 8124.6127 2558.9295 5834.2131 26906.1848 6438.2073 6093.263 295436822 mer Metal Homeostasis Mercury Detoxification Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 21130.9738 22578.963 10608.0832 12509.3413 4392.7979 6794.2917 5843.8318 109530.6438 7821.0937 125483.9637 8985.4325 8796.9964 19292.8575 23153.9877 23153.9877 6531.7182 20897.0597 8699.758 10256.282 16901.0237 6354.935 10272.1118 8341.8294 18837.8899 5704.3315 48760.6635 8019.4905 17973.5441 24244.6695 13587.2788 13781.9174 17754.7398 11413.7733 325953370 vana Carbon Cycling Carbon degradation Vanillin/Lignin Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 111028.0989 46301.2507 446193.9362 438834.8687 60199.6003 50331.6196 467612.4144 189966.4365 56678.6743 62071.8564 77418.3327 75118.1572 1148622.4012 327440.5749 122814.6227 95732.8641 157868.9001 157868.9001 47411.6417 67605.1151 51444.0841 65339.2358 94800.4633 2759513.5448 40578.6942 47873.7223 60864.9302 56324.132 215826.5752 82642.6244 177702.9071 52045.2457 50688.5441 52302.8819 39303.8526 136488.4431 375105151 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 10899.0471 492577.0964 6319.5196 2723.7437 21964.6747 15000.9791 4815.6541 9847.8038 372282452 phn Organic Remediation Herbicides related compound NA Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 518353.548 155531.8468 182610.2054 407206.1687 98421.7553 39389.7036 181611.6144 351483.1102 151018.1146 322565.0492 152770.0871 190200.9202 14445491.0055 228270.0862 221539.6987 302332.4009 288152.5237 288152.5237 176902.0965 205061.4211 137044.0781 327088.8684 441475.1312 433133.8291 254797.055 145265.1594 165982.072 158970.4815 420664.6975 426273.6682 264944.6351 135633.9476 127969.8446 179710.5626 144054.1479 386686.9819 56963256 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 4081.8429 3501.6238 38045.1238 6574.1878 3624.7433 8068.4368 3622.0554 661590.6445 14432.2449 4222.7315 5233.3385 2431.7198 2431.7198 4277.3486 17388.5641 4239.7128 4401.1838 19762.2628 7744.613 30332.5365 13599.827 6277.099 31022.6339 3645.1527 9513.6378 2138.5657 6464.5196 5742.2265 2386.5317 4638.9272 123978302 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 4440.2918 2939.3002 4499.0728 77949.3595 7433.9527 3208.2543 6831.4367 5706.9452 5958.8342 8035.2971 8474.7302 4998.769 5783.3726 2208.8319 2993.3904 3378.2556 4976.1416 90954651 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 205878.8392 8751.7275 2839.6404 5029.7795 7879.568 3706.4119 59254.4078 3538.3248 4534.8876 4578.2388 2081.964 2081.964 5724.1357 4691.9678 3006.6295 3684.5949 4672.6201 4523.411 13612.1773 1956.9419 7349.1966 10269.2773 5553.9204 4627.7928 3320.2924 4603.1428 2126.4549 4119.2803 332174977 mannanase Carbon Cycling Carbon degradation Hemicellulose Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 300907.6654 52600.8049 7963.5571 3428.1808 3920.5855 5617.4104 2347.3903 67148.9223 3507.8671 8445.5491 2669.8266 6360.3497 4671.0125 3414.5294 4076.7206 3204.0992 3309.5634 3673.4779 16037.9606 3518.1189 10616.6605 2826.6577 4421.9199 5864.3707 3437.699 4404.4706 381203053 catb Organic Remediation Aromatics BTEX and related aromatics Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 7830.0312 7934.4399 8368.9331 7000.6163 22043.4663 4598.1324 8528.1877 5568.1853 5177.7472 7664.959 9740.4218 7182.3765 7182.3765 4368.5819 9390.6046 11271.3504 6358.6177 5505.6204 2755.7766 5053.9585 8663.3478 4197.9313 13417.3556 7859.5231 9686.2581 3221.5567 9963.9621 4767.1467 5382.5116 4729.3381 149918733 alginase Carbon Cycling Carbon degradation Alginate Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 44350.7407 34770.2744 22902.6307 36459.3754 6826.8287 25666.5769 62308.0298 16367.2821 30708.501 41151.352 20549.2039 524847.1192 30019.1965 23984.4126 26403.913 24753.5811 24753.5811 16677.243 49142.6373 24293.2455 108452.0349 84084.3191 38761.897 82951.9348 23134.4653 47910.4143 27139.9553 107228.9438 26542.4269 39930.8094 13868.1474 32590.4959 32099.5949 36018.9427 32590.9686 301320311 amyA Carbon Cycling Carbon degradation Starch Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 257202.5003 173145.687 20065.7056 70935.506 4424.0058 484809.6237 36792.6053 121114.133 21635.2329 76518.5389 31579.2692 2321402.8453 86623.5278 27831.3689 32179.3352 112515.9565 112515.9565 30646.2019 51789.5714 172738.9914 118398.8294 46386.265 146371.3525 38275.0243 65347.944 44514.9493 44479.1527 220036.3803 83499.7622 73742.9632 25731.8234 52899.0326 71777.9137 43396.8961 29365.8326 113934988 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 13535.1693 7967.0337 5030.8522 6542.3372 4904.1535 11214.8511 9836.2776 18113.4827 4442.5358 111583.022 85948.8438 15611.1843 5683.4411 6238.1581 6238.1581 7817.8274 22964.6219 14255.0146 9629.6272 36217.1105 8628.7092 5938.6303 7433.9631 13952.8861 4795.8137 22432.3415 15398.1628 17742.4225 6855.5421 8220.2303 10180.0704 6524.6283 14434.0374 299798760 RgaE Carbon Cycling Carbon degradation Pectin Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 103970.1161 59621.9015 28465.1426 56148.5083 9219.4527 110318.2421 112490.4275 16546.1548 29832.6341 46511.5716 24809.7346 766764.1229 80593.1199 38896.1539 33576.8256 42358.6973 42358.6973 19620.145 51102.3962 30394.2608 146529.1427 302181.3468 68559.8536 24131.7715 33627.243 32451.2565 126552.0323 63952.9402 36032.7282 51501.7655 29703.5961 31895.8458 37590.1972 57344.7786 54023.6829 119898644 arsc Metal Homeostasis Arsenic Detoxification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 355015.2889 59003.2638 63226.9717 458767.317 119245.3409 56927.2697 115933.0136 68097.2085 73143.8361 177963.4866 94962.8324 2084624.0843 80921.2924 60842.8888 88704.769 67679.7512 67679.7512 52244.7135 168702.9524 112002.8992 61297.8945 131887.5886 60023.5188 61224.0855 82534.1234 192876.0634 159113.5957 305658.4021 148499.4381 138251.1579 67904.7234 52532.9539 97436.1476 52408.7998 253638.9231 393172368 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2012 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 920337.8498 44652.5293 66966.8996 142136.0268 132324.0795 25279.3484 115519.9905 74880.8626 50466.1903 86906.2773 100391.8222 54143.8564 2354770.8263 138058.7572 102407.3387 81611.7212 170873.0451 170873.0451 96150.9611 170932.8547 114652.5325 107343.9893 116903.9581 250266.7265 51280.0628 44080.2402 100599.6848 38831.9284 174268.0211 33795.2279 100381.4749 55071.9725 48780.2862 66203.7984 62901.114 139305.3924 296091591 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 10996.4614 8929.4056 9643.0502 2709.8329 6544.4179 39848.3154 6729.7827 12050.0063 7296.0133 124205.663 6309.8064 6822.0828 12931.2192 16279.7642 16279.7642 4612.195 10723.0489 7113.6257 6667.3978 9916.4012 9555.0305 3331.6764 10768.7668 11625.6115 12543.912 19750.8169 13794.9805 9049.697 7392.7489 29502.0369 25481.6805 7187.6237 15060.6504 34498812 ppk Phosphorus Polyphosphate synthesis NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 9781.5979 12127.9594 9683.2748 8476.8151 10710.5348 2940.3051 5036.7781 40079.603 10840.4878 76252.7322 9975.4002 16248.4295 20073.928 8863.5769 8863.5769 5075.5684 17768.345 6472.0267 56748.9197 50875.4077 7284.4294 4994.1223 7681.2026 11879.1481 48147.2495 30327.7438 10087.8539 14503.1562 24005.4837 11474.9941 10038.5004 14030.1306 11345.4458 113953544 linc Organic Remediation Pesticides related compound NA Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4681.4942 22438.7753 6333.224 3847.3184 23409.3819 4063.2763 2981.3424 3110.083 148245203 endoglucanase Carbon Cycling Carbon degradation Cellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 20054.5886 6837.3586 3366.898 3191.8113 4302.7828 19006.3339 10935.3707 5905.6082 3024.0201 11549.0449 9003.3164 6235.2687 6235.2687 9435.4095 13704.8139 12906.2942 8847.4561 14436.3713 2600.0337 6941.2012 10507.5115 7959.1582 26238.0567 6784.5978 11200.1962 3412.6694 7886.4893 74234.8448 4703.0795 8973.7276 254424780 amie Organic Remediation Aromatics Other aromatics Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9553.0581 7086.7507 5677.638 8916.0063 5273.0797 13444.8888 9632.3081 9473.7025 60513.3906 162842.919 13393.4007 8032.0518 6130.025 4591.6214 4591.6214 93561.055 14643.9192 11220.663 49334.2051 7941.6974 8975.7381 3674.5196 8791.8037 37122.7423 6616.1578 22845.2594 11926.4685 38870.3778 29787.0402 6143.9311 16185.0565 4186.4747 4735.3209 214030412 cysI Sulfur Other NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4336.8247 5208.1239 54147.3111 3952.9141 1941.8018 1941.8018 4293.6718 10226.371 2273.8036 158423982 PRI Carbon Cycling Carbon fixation Calvin cycle Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 570840.4592 17243.5249 293911.2086 87307.6905 490502.8579 33243.7206 263797.7502 449236.6028 209378.3023 91134.2125 133569.1935 214116.9639 1970491.4276 217440.3668 164894.7551 201748.0561 272125.529 272125.529 102499.1688 323459.5099 107781.2928 177213.3195 345132.7036 178153.5077 154762.3754 137431.6432 139955.1306 264054.2007 294373.8845 121371.8137 146450.8658 87421.5783 124438.3389 132976.7024 81743.4319 458835.28 393219306 badh Organic Remediation Aromatics Other aromatics Fomitiporia mediterranea MF3/22 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Fomitiporia;species:Fomitiporia mediterranea; 11514.4231 12893.6247 12977.4645 10881.1505 4614.5083 6906.4501 4005.7152 9009.312 14333.0178 7070.9366 148012.5182 10040.9009 9450.0957 7724.0381 5083.8838 5083.8838 5783.6217 17607.9219 12229.0654 10728.8512 12935.1998 16122.8978 4900.4627 5515.9759 12668.1648 5052.3914 24514.6629 13145.1065 17384.0875 5474.6068 7915.8892 11112.1579 4669.8909 15589.5304 387855721 ppx Phosphorus Polyphosphate degradation NA Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 8263.9323 5468.4989 8711.0238 26143.707 18732.1944 7471.2015 23585.3847 4846.4777 5477.5737 12405.1588 11580.9896 180296.6169 109107.0022 12662.3954 11284.9837 13960.3869 13960.3869 5871.7368 11238.9372 11940.2154 4769.2668 7631.6427 16275.0375 4139.0689 6919.5448 27933.2867 16011.1175 22706.8201 38397.0148 15679.84 10329.918 9593.1391 11572.9425 7890.4016 14056.0738 146312868 cysJ Sulfur Reduction NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 18142.1941 2988.1118 14079.7665 4852.8968 4852.8968 22900.3761 4634.2784 6029.3623 13739.3124 8201.176 6026.3033 2987.9446 3548.8355 8582.5633 753685.2824 359785100 pcpe Organic Remediation Herbicides related compound NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 10085.8049 6334.9724 10795.5364 90448.5091 31935.2157 10066.2805 10660.203 11346.7971 13993.8241 6544.0555 167707.1522 9745.9001 10384.9109 11515.0144 9964.0629 9964.0629 2972.4593 15305.4872 7828.612 136544.9714 8110.8056 5495.3217 6449.8195 4743.4637 18086.7854 14978.3548 20656.1984 17375.8443 13252.2785 6236.4351 6846.0112 13842.182 3887.9976 10327.7248 292560795 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5334.4705 29899.9693 11331.8012 3191.6686 5195.026 4642.2551 3804.0509 3804.0509 3612.0982 7582.842 6205.8377 4069.742 5155.4953 2725.5211 5359.7376 2736.9122 9827.9408 4031.6313 5058.0656 3120.1252 3484.2837 12152.8958 4086.1462 6220.2753 163761548 dehh109 Organic Remediation Chlorinated solvents NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4417.0393 3382.0564 3462.6969 3962.4211 4791.7099 27358.7103 6767.896 116590.132 6417.9821 7597.9927 5228.8243 2650.5408 2650.5408 9976.2642 11141.1734 9547.7257 10113.7484 5723.6869 7952.4194 3891.1035 21096.9266 9439.3173 5865.324 17931.5241 7138.3417 24717.8804 3368.528 5561.5366 8524.9582 3762.4139 11644.2429 295897706 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 21358.7487 115586.5896 12965.7341 25604.1421 8352.651 6917.2852 14406.2916 7521.9607 16113.5433 19835.3117 34006.2577 358940.668 22327.0738 24434.5263 22545.9376 27171.9583 27171.9583 14784.2564 38247.0273 16582.7086 13591.0067 41224.5754 11918.0597 6244.8146 36321.1344 21888.0244 72600.6368 63154.1532 69970.6604 60221.246 6754.2537 17813.1076 14713.1441 7485.587 115698.4287 324314101 ppx Phosphorus Polyphosphate degradation NA Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 52469.666 170879.8048 50252.2472 132251.8022 25086.1983 23892.3273 40866.1007 14652.0174 27465.0595 54909.4379 49426.1877 1133323.9677 36577.2938 40732.1571 77910.2027 38915.3696 38915.3696 27168.5937 85618.306 31980.5905 70342.042 59898.2856 29529.7582 26333.8636 49206.6519 57051.2463 160171.2419 124647.0899 84783.2864 81238.205 26199.1335 43568.9802 45018.2403 32363.574 37345.1994 115523882 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8744.0853 4501.6809 3826.5264 5330.7489 8515.1964 6436.9385 17665.2117 4346.7172 92593.2896 10912.0498 10298.3338 21866.9266 5194.9513 5194.9513 5151.4503 11498.9858 6736.4479 22862.1927 11126.9213 10692.1692 3351.1873 3941.21 8007.4757 6811.2466 20121.8716 9365.8106 9370.5062 4080.5426 5601.2595 5886.8931 5774.5787 40628.7242 458468 chitinase Carbon Cycling Carbon degradation Chitin Janthinobacterium lividum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 38165.1764 8186.1368 16068.287 39072.1673 5524.7961 8433.3747 4472.3688 18255.0236 18669.9798 8248.4137 293285.7547 15006.9835 12618.0628 18576.8091 7377.5881 7377.5881 8573.7895 29383.0702 17343.0095 16576.1291 29511.5154 41037.5512 11690.0913 10644.9942 35358.9474 7668.7036 30070.4139 12318.7778 29707.8165 10102.1883 15538.4518 11181.5537 13761.9513 54667.5026 322511796 dsra Sulfur sulfite reduction NA delta proteobacterium SCGC AAA240-N20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6278.1923 4318.8216 2465.0835 158187.4948 4623.4742 4105.5939 4761.8174 2878.5278 75640.3587 10596.0363 18500.5053 3888.2303 41555.428 41555.428 16127.0143 108202.5799 9411.9629 5699.0681 48667.5081 8446.6273 272749.3566 4683.8121 7402.1255 41387.9169 15467.4343 4892.5657 29068.3417 2393.8625 4607.5178 5491.9752 4897.3687 9354.4152 218440704 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3925.7016 4360.8276 58284.0471 6445.2797 3770.9683 4690.6167 1949.6557 3480.8478 5123.7451 1661.7591 3310.8692 302568134 amyA Carbon Cycling Carbon degradation Starch Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 37716.0318 14747.5861 14695.2451 87293.2926 44949.0209 10107.8183 39357.1151 41057.4067 17247.3895 37058.8842 88531.634 487025.4283 73984.168 39789.0766 124281.1078 37901.5981 37901.5981 16268.9038 110819.3166 33964.8403 52813.2998 37991.6144 28454.6804 36075.6139 26740.2094 30099.0133 21185.8922 70057.0056 32694.9224 60417.9369 23853.9869 32624.46 25373.9753 41403.5696 82035.7276 147886218 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8717.1564 6421.0922 9356.2762 38287.0959 4110.1674 5851.5595 7792.1647 6851.5647 6087.3751 6672.3436 397197.111 9899.064 9958.8592 6060.2158 6060.2158 5324.6626 15622.0971 9763.964 8732.7669 14935.6267 12351.5863 7772.1385 6190.0133 11041.3204 5120.6665 19282.5098 12917.268 11513.7044 6408.3824 8524.6379 6925.578 5704.6698 8325.1099 311033176 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 67005.6401 154930.5278 10359.1776 91771.1055 13172.9556 5071.7282 9382.0284 6925.0807 11292.0999 14605.3476 26230.0808 102904.8986 10513.0544 28275.5998 10133.2498 13430.6928 13430.6928 3790.1289 23653.8764 13573.17 10374.6428 31488.9072 5997.8081 10591.1279 5900.914 11131.4126 9465.1489 27663.596 13080.9173 13377.734 8039.6284 11775.2227 8628.2659 4078.2073 8646.7062 21648074 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 9173.4006 9526.9997 5572.9666 24889.2845 8752.2083 3141.1032 8637.5099 11821.9948 8085.5211 18371.5731 9329.6696 202099.7196 73226.1182 9116.6135 17392.7816 11811.1726 11811.1726 7347.1956 18292.839 15489.8852 7485.9098 10562.1019 16379.413 4831.9265 10340.1864 24049.1094 5931.2471 37688.3966 19312.2565 15674.8332 8920.6219 6946.0625 9696.4121 4250.5058 9686.0604 387888191 cysJ Sulfur Reduction NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 26139.7971 82038.0586 7783.4462 5692.0244 8637.7746 5845.3307 5160.7196 6533.4723 9926.7825 9198.5197 148461.744 10753.8445 22657.9641 11063.4463 35325.7999 35325.7999 29656.3836 33780.5201 15231.2574 15214.4759 25388.1995 1140416.764 9029.222 9095.9102 9260.7755 6550.079 13726.578 5080.8705 16664.2487 14933.1313 5767.4627 7953.1777 6457.6041 27573.0347 308755055 amyA Carbon Cycling Carbon degradation Starch Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 6762.2092 4417.7007 7270.199 6968.5246 4400.9342 3527.6083 3147.0297 5772.8632 9031.1794 4381.2363 93977.4114 7904.2199 7860.2645 7490.2771 4582.1139 4582.1139 5155.1334 14917.8586 8437.6846 6680.3307 7960.0796 10310.0034 4379.1574 5577.9193 12346.2104 2848.2986 14145.3962 6758.5307 12631.3093 3824.32 6008.1393 6274.8611 3468.1405 11377.6172 146348553 nifh Nitrogen Nitrogen fixation NA Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 5604.8866 9321.6094 6150.6996 4988.6271 3716.175 5114.157 5816.8082 3123.2905 97839.7549 7363.6862 5284.8562 6417.0413 2988.149 2988.149 5497.1347 7169.4973 5165.6102 7509.3838 9745.7495 11110.9063 3719.0331 3197.0633 9933.9834 3620.9532 12081.0979 6890.736 10753.7587 4194.6775 5267.7144 7073.5262 4212.5971 8410.2037 37900195 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. OH20 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 18148.7367 9496.0465 15238.4961 9480.0028 21667.9893 9321.5213 10737.3048 10379.9641 11861.7951 16464.628 6316.8008 344676.2957 17806.5608 30003.9169 25487.7827 11171.0023 11171.0023 11240.7846 24502.8224 13005.9257 16782.3513 18814.6438 20010.4078 6620.234 18067.3651 15757.8516 6548.3441 29482.0908 12950.1139 19383.3988 28868.4445 12224.2012 13048.4818 14545.9026 25304.3079 297154942 xylj Organic Remediation Aromatics BTEX and related aromatics Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 35747.0654 20076.2581 37304.5116 36009.6056 21817.5017 136729.741 107752.853 66896.486 47832.7125 43834.3725 63162.4186 808752.0695 116207.3604 111486.1429 795209.2895 27614.9036 27614.9036 44493.3791 68349.6599 37542.0287 119689.3367 73939.7637 111265.8844 29925.7237 27015.5618 44516.4891 54216.4482 175805.4773 47636.0965 87628.5091 19585.5394 40119.719 114924.211 112915.1259 93713.8544 319800568 arsc Metal Homeostasis Arsenic Detoxification mine drainage metagenome 19936.3068 36608.1671 55209.2773 11802.9293 93099.9596 6184.7209 9930.3254 4301.9702 4301.9702 3738.1846 4951.0214 3205.2118 3907.1852 5376.9949 2997.7002 8172.7729 5035.7657 302419501 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 4322.3141 9715.4048 2945.7375 5481.3657 5120.725 2465.3965 80700.9424 4871.96 3947.4867 3947.4867 3167.3989 7619.1639 5167.1093 8744.6818 5691.5853 3116.7893 2415.638 7407.5249 28266.1835 10129.1005 7884.6893 9945.9858 2774.9245 3523.1596 3135.0331 6408.4765 45386129 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 11365.8963 5234.9545 2532.1825 3531.4221 2844.0432 4365.284 7255.3654 3385.9962 91831.6544 6210.2638 4405.7565 5485.8558 3446.1417 3446.1417 4426.6467 10466.6872 6733.8998 4997.9778 5548.4215 9249.1493 2235.6984 3706.5826 7542.6167 2952.7667 17598.8778 4507.2148 8201.3796 3458.4403 3758.6728 5404.1093 3472.1685 11631.9629 282896437 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 10120.1309 16383.0691 10670.7921 8155.6752 9046.5899 9101.9854 10616.896 4339.7444 194846.9487 10728.8734 8662.85 6310.8023 4114.8891 4114.8891 7038.041 17583.4029 14494.3683 12664.8289 11795.0311 8958.1992 6830.2918 6322.5813 17746.0828 23858.4356 164111.4303 12333.2849 12382.7005 6975.8628 54928.7373 10603.4753 7695.4657 15497.4145 227069607 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 5351.4805 20700.5549 5918.3085 14722.6021 57385.6697 11178.5676 40273.3766 5476.5496 3903.177 12454.3765 19170.2257 19170.2257 5725.3259 30222.6405 3195.7005 8397.7104 8719.0269 4875.8591 8109.3344 6600.2864 8160.7896 30851.4866 5423.8523 12223.2649 2011.3388 24862.1969 9799.7021 3101.5674 15437.511 325674082 ppx Phosphorus Polyphosphate degradation NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 11056.2562 9426.9512 21653.4521 18107.371 35580.3616 5638.7442 5024.7763 5696.0711 12881.5853 5915.8335 219333.0234 10235.2726 12376.2279 7229.7401 4759.5742 4759.5742 5119.2298 14325.7661 8266.0218 9187.2973 21458.7073 13860.7891 6241.7219 5667.4985 14449.8951 4647.12 21289.242 8177.44 10821.8582 5398.1198 7689.3628 9745.2062 13592.0778 11059.3344 392108502 terc Metal Homeostasis Tellurium Detoxification Mycobacterium abscessus 5S-0708 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 104304.9048 6096.3053 9643.0514 7188.865 12030.0612 13306.7615 51780.9482 19943.8402 16331.2161 15887.9112 10032.6471 301974.2333 10782.3041 19684.4686 13755.38 15396.708 15396.708 7761.6275 19917.8978 18085.215 9408.5448 19564.1818 41039.359 7907.6821 13003.4112 18855.2402 14812.8877 26978.1912 24047.9535 14728.4664 9357.5928 9670.0763 22399.1125 11305.7676 17022.2888 212539392 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 15052.225 5846.1296 3132.6973 33955.7045 41317.1711 14400.0131 113679.554 3940.7574 3476.485 6166.846 4316.5857 12199.7134 6390.9446 8364.9017 5457.8215 4501.4398 22329.6989 14504.8961 5514.2208 30805.1228 10259.7863 7870.4355 13364.4532 5533.3715 28675.7108 13591.2318 17357.9323 406040915 atzb Organic Remediation Herbicides related compound NA Acinetobacter ursingii DSM 16037 = CIP 107286 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter ursingii; 6110.0767 7952.2154 9291.087 7089.6781 3382.4952 2682.4418 4463.3687 4364.7099 80617.3847 4566.6766 6032.0057 2132.1112 2132.1112 4241.4969 14169.8305 8453.1243 6016.8266 6788.6471 12925.9145 4087.6542 3479.6826 7099.9577 4336.5151 10905.8403 8088.5866 4164.2905 5431.8082 19816.3742 3333.051 12353.3119 106888572 ppx Phosphorus Polyphosphate degradation NA Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 5348.6177 2163.8566 9700.9828 3256.7821 3517.7764 4723.7847 5776.9337 2491.4211 2491.4211 5376.9262 2519.6553 8257.9349 4564.4556 5964.5457 3749.0029 3072.8592 53004.1069 13322.0053 384066927 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 13395.7381 13918.5414 16936.2462 7037.3348 7340.3971 15047.3999 16039.7233 7773.7258 9568.0346 5565.4388 125601.9315 11874.2869 8624.0581 5602.0331 3909.5564 3909.5564 4093.2325 15244.0055 9249.5799 8018.8499 9340.7003 9028.7549 3811.3306 7732.8233 12725.6745 15900.4582 17041.0686 12210.1476 11774.8397 5426.6563 6222.7752 6222.0052 5824.6934 10761.0557 134097246 urec Nitrogen Ammonification NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 6826.3715 10197.696 6360.844 7936.0209 13392.3862 4755.6788 5040.4637 2779.2124 7226.5991 5219.5856 4663.5355 116865.7813 15837.7666 12050.0656 6602.1996 11521.5019 11521.5019 5700.0055 7689.3207 7957.8291 8080.3775 8897.0102 10237.4174 4413.1645 7363.4698 11411.6059 3155.2299 14131.7798 6997.1193 8786.0087 9196.2888 4238.988 6735.0241 4413.7209 11236.0807 182633339 tktA Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 4471.9187 5344.0982 4585.1 15086.926 4444.2109 3357.0948 3163.8669 2099.4548 4569.4647 5369.2427 3779.6026 289295.2185 6408.1757 7109.1072 7230.9034 5641.6486 5641.6486 3597.0709 10843.7517 6940.1339 3703.9208 106160.1807 3842.5485 2713.1905 3308.2216 10114.1154 3238.2245 12420.4876 5488.7228 10364.3457 2806.8601 4891.8222 3999.7541 2107.4513 6392.8558 39649069 tfth Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 31802.6683 10241.793 23706.7203 23658.7978 12011.3171 11980.7207 34020.4961 32919.9107 30462.9608 47075.693 29152.8584 1535939.4041 23204.3814 32254.7046 51568.4238 27203.2985 27203.2985 71238.6375 51614.2041 31263.9715 14919.1595 38242.8612 18766.8247 9811.2267 33786.6661 213006.0744 22206.9984 70506.0782 85433.5058 83760.6647 35895.0177 33139.3626 48613.4186 22898.5463 67692.5744 164456048 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 12894.0509 23243.6073 27748.2057 12240.5345 8168.3301 9259.679 9564.6043 39215.9593 16358.5895 16284.3984 220192.2881 18058.7614 21174.3985 123298.4397 24425.7068 24425.7068 10360.8039 73833.5512 27436.295 11768.606 21333.6153 19256.5388 15986.7227 20111.3806 32010.5335 9993.6073 165503.3994 45590.3191 27366.089 13859.2002 34256.4836 48712.0301 8940.0943 134923.5139 18182574 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 53985.0189 12132.9011 75976.3779 53095.5163 64508.5236 36514.2176 68994.8811 36941.9598 50200.0798 37792.8849 76582.6405 47132.1099 1399792.6086 56243.7324 63042.0171 147571.5448 50479.1258 50479.1258 34051.4335 78361.4169 59037.1206 102397.8304 68140.4188 79191.1101 39684.716 31397.5668 63722.0231 31130.2463 116859.5654 59353.8576 67563.285 61904.0577 54713.047 41435.0258 34248.3951 71743.8368 83771612 nitrilase Organic Remediation Aromatics Other aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 21479.0452 13932.6943 13035.3438 27044.9242 8265.1947 5759.756 20949.4378 48167.0662 17213.4057 23196.6258 18151.6068 18673.1649 524230.3941 28485.8866 52200.0638 23887.0558 10310.5271 10310.5271 11998.2651 36007.5001 27150.9742 21555.1931 28146.5614 30633.9213 17021.0094 13101.5914 33660.5199 62145.3141 39416.228 64644.5954 28856.162 20995.696 15789.326 29288.4124 9494.8913 30986.8496 48094247 xamo Organic Remediation Other Hydrocarbons NA Pseudomonas sp. OX1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16062.0877 6755.074 6041.4775 2675.3579 7230.665 5149.7783 5578.0395 136530.4552 14425.7944 6775.9041 5579.0849 5579.0849 5539.5107 14161.6224 7658.9543 6280.6106 9778.0035 10150.1909 3778.2897 3594.9195 10422.3124 4118.9558 16454.1202 13771.629 9226.3609 3487.0898 5097.7269 8296.3867 3456.386 11304.4334 330467874 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 63037.944 73712.3312 6754.5027 12146.1842 2090532.8418 119529.5165 215054.8333 27985.1094 13243.4387 42261.3067 28873.1103 384693.2748 30156.818 67432.0128 59753.1516 23518.0854 23518.0854 11421.9713 60161.6528 19739.6963 66496.288 67130.3135 86810.383 27867.4101 27589.9302 111216.3778 68919.3379 45429.6827 37420.3255 43532.2677 48194.2032 31470.4943 29518.4179 17399.0969 54243.2513 334130366 terc Metal Homeostasis Tellurium Detoxification Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 5997.7064 16853.9068 184644.0972 7510.1489 21812.3517 6283.8353 3863.8889 11702.5396 12369.1612 5778.6861 90691.649 37959.1532 8379.6957 5432.7975 7694.9504 7694.9504 3490.8837 20845.1007 4150.0552 9636.8596 6405.7634 4011.827 10238.2831 6849.9733 9412.775 24098.7275 6542.6723 14454.5737 5964.3464 6263.223 11046.5709 6690.3677 7962.3772 397092066 chnb Organic Remediation Other Hydrocarbons NA Chondromyces apiculatus DSM 436 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 32782.7388 11963.8903 10549.8076 4242.4344 6097.0468 2592.4515 6611.147 7889.0566 6216.7115 170345.1949 7539.153 4372.3411 4252.8006 4252.8006 3770.3705 15777.9061 4644.6741 6350.6092 6830.7687 8157.4761 4933.0735 13411.693 8960.0004 17429.0207 74971.3071 17721.9052 15538.5429 5389.7349 6992.3663 11027.8911 9648.5003 23889.8177 3378273 badh Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 13468.4917 11740.6506 7491.236 106848.8515 12344.8568 13292.5865 16511.0796 5686.6233 5371.179 6037.1377 111384.1799 8139.9988 15704.4063 6045.9791 4450.7776 4450.7776 5401.9502 13600.9073 11956.8969 232293.9598 7362.5361 7851.5799 6534.6385 10151.7724 8841.0047 10275.8052 27665.3251 7927.4841 12873.097 6872.8707 36443.8859 10461.013 4234.642 99655.0807 126347556 inulinase Carbon Cycling Carbon degradation Inulin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 291229.1373 50804.4235 14874.0452 7561.2636 20552.8437 7654.8719 23185.6703 12024.9907 10679.3479 14681.1645 20602.1105 12294.0941 378792.4365 31230.446 31808.5849 121303.9793 20248.2784 20248.2784 14303.1919 30033.4673 44406.9913 16772.4244 46557.1358 24917.4206 10844.2441 13177.0624 26566.7435 13225.3152 53986.6575 25632.2683 36481.8328 12210.6521 13588.7305 27594.0576 11590.3822 19745.6193 302681811 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 43587.2921 39307.8714 24704.5543 25101.636 14314.1191 14512.3637 31002.8502 21570.777 35537.5474 28551.0855 25639.2107 805044.8056 29967.3038 33369.5241 40607.4822 71906.4745 71906.4745 25504.0233 59709.2678 32126.1265 55503.3129 52023.8976 60299.8981 39367.0855 23880.3992 60166.7806 31819.1745 115535.2613 33008.3853 45133.8573 42873.2801 40670.9954 41027.0011 28419.789 72124.6223 158440071 amyA Carbon Cycling Carbon degradation Starch Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 14771.7723 6421.8837 8099.5387 10382.1237 5861.8093 7795.258 5757.8567 7172.9748 29210.5601 15215.6562 180492.7097 11071.3983 9978.0138 7208.8617 5429.8089 5429.8089 9676.4367 23031.773 8616.5855 16290.0755 31336.2901 9232.8289 6432.5758 6482.6889 17091.2957 9069.5295 32037.5903 13889.2198 16470.0418 6595.1949 31469.2269 8294.0737 8880.8121 13939.7272 190687652 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6947.3959 4454.4208 3591.9982 2567.9403 6772.5211 5463.8037 4846.6976 91455.2513 6407.4308 5812.9451 4077.5885 9087.5462 6056.9017 4195.685 6193.5055 5579.8417 2788.5728 2876.0816 10752.0759 3805.9527 10743.1928 6748.2487 7572.1405 3566.3477 5213.5986 6816.8396 2877.1185 9488.5199 334145465 aln Organic Remediation Others NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 37830.201 1470253.4065 5215.4989 66143.9293 286496.2876 12506.9644 18279.01 12629.4873 28891.1317 170726.6056 11989.1875 36633.0171 11149.9657 23939.566 23939.566 8799.3684 46725.3066 97408.0648 210629.2516 43765.728 12258.5463 10619.6769 19249.4066 15786.0764 13860.1652 222917.4356 46838.3932 22580.0054 13902.2974 22112.552 24990.6356 36900.9317 81125.3599 339637427 ppx Phosphorus Polyphosphate degradation NA Lactobacillus pentosus IG1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 4757.0258 15256.853 6959.8799 4174.8294 3892.058 2821.7894 4342.8854 27465.6627 3286.7949 126672.7665 10192.5491 9608.6561 2357.7959 2357.7959 5476.5413 10602.5272 10187.1363 5887.6018 12179.8518 9138.2699 4744.1056 3531.2222 10548.0366 4395.7655 18411.7689 7997.0537 14046.7789 5987.1303 10371.4229 6363.7761 4464.8472 9485.1119 298551117 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 10249.0856 5203.4823 4156.633 5022.055 183345.5585 10221.5025 7995.2669 8004.2787 8396.1309 8396.1309 4706.3231 9206.1041 15460.461 4930.5461 10467.007 6011.4211 4914.2755 7722.3169 18776.2224 4077.656 15311.136 26388.658 11700.2294 3732.1111 5178.3517 4149.9454 3146.6388 8607.7452 337758208 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8726.8646 26492.1852 8786.1589 237587.6612 3769.1237 6865.8889 3828.0317 9504.0557 6294.3099 7243.4834 163688.4221 5468.3531 11063.7748 33725.6678 5616.9978 5616.9978 4840.5062 20458.4167 8160.0971 10095.333 8019.3369 10916.0039 9393.6269 8333.7573 8674.2556 6866.9662 14943.5715 9799.8503 12611.0991 12821.9827 6196.4133 14510.3826 7816.7989 8618.4864 333989773 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 15075.7755 23018.8363 15492.2669 29603.2904 21561.2667 7428.5997 10741.4207 6908.2874 8292.5537 46999.2403 14864.195 227228.2811 19542.0703 17037.5873 28547.5087 11903.3443 11903.3443 11463.8616 25998.6304 19436.4195 14008.299 27472.7606 42328.4953 44196.1289 16736.8799 35416.7616 9858.3971 47069.2409 22957.255 24101.7666 9659.2539 16054.9684 20323.7639 12575.3677 22099.8098 55379419 tehb Metal Homeostasis Tellurium Detoxification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8693.1328 6222.6485 100035.6659 25312.9211 12231.9538 2907.6854 8848.9907 15978.4573 20398.2603 117671.6109 28708.2564 10105.1848 9477.7005 8603.9672 8603.9672 6233.8982 13429.8173 9167.953 11544.1001 118082.81 7465.9684 7233.4055 14988.5802 24254.4952 5812.002 21207.8685 9654.946 23891.1918 7349.9306 11832.9193 18231.2013 5716.773 8544.4863 126459282 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 126255.0714 30665.9238 74033.328 119679.3513 266575.7634 32060.0872 80664.4187 104273.5435 35469.7169 51043.3588 83950.8196 40894.4317 1805720.1878 80407.9761 82617.7794 126505.0124 84477.4835 84477.4835 55078.1365 93655.1681 75400.0195 154304.4405 95992.8525 109174.5635 46928.1361 54086.2807 73005.2236 37539.4012 139669.646 91053.7268 85869.1552 431869.0791 45127.1556 54770.2129 31902.8187 112270.7094 88812482 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 4481.5643 4299.5157 5829.9562 2736.4413 2276.0116 4149.2718 7194.5921 4363.6834 109441.7365 6381.6648 4616.9759 6558.9256 2650.2824 2650.2824 2985.4924 5276.0881 3403.3316 3768.4527 6575.1984 2460.1827 2549.6243 5858.7595 3395.4502 7113.5097 6971.7724 8210.8928 2613.1438 4832.1754 4005.5808 2671.8889 320332874 ara Carbon Cycling Carbon degradation Hemicellulose Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 7972.1039 12461.7018 2956.922 5044.911 6044.2322 5774.7193 3764.8509 73493.5158 11922.3038 7141.9191 7141.9191 11414.8673 10693.0748 7069.5138 61499.6346 29869.5668 3426.9979 4754.7803 11022.4641 3678.5999 15513.1852 233972.9419 9393.7074 4076.9356 4812.404 7423.6441 3902.2901 256729304 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 4750.719 2739.7369 2615.5568 3158.0398 3403.5506 78189.4798 4965.252 5908.4128 4746.1611 5904.9286 4741.992 6059.2508 5521.2347 2142.0626 5339.1779 1843.2193 3458.2893 3485.5793 333480817 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4190.1605 27828.5367 20761.9436 3021.7207 11207.221 100776.1547 4323.4573 9146.7858 9146.7858 4753.5977 7147.2995 4890.9431 3154.9576 2244.0397 5514.7716 3759.2948 5627.0173 326798504 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 5574.486 12426.9189 48721.5427 7003.1153 8753.3869 14337.4053 5797.3351 10857.0743 11278.7635 122361.1844 6859.3189 11443.5903 14014.6071 8751.1557 8751.1557 4535.2536 8458.1049 10257.7617 19243.7713 16865.5433 6432.7678 2999.6239 5689.3919 8712.193 10000.327 21106.2128 11753.6048 13171.9246 6419.9102 7708.6218 6689.0404 167772488 amyA Carbon Cycling Carbon degradation Starch Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 9360.2513 7183.3408 14453.1471 13695.2019 11302.8939 59440.5045 14987.3756 12076.8615 28836.338 27670.2733 235154.0398 41940.8582 15316.9428 16287.3143 11245.2672 11245.2672 7782.3024 22383.4431 5988.9823 22355.7954 28798.6469 11702.4189 10080.1719 15558.5761 39803.6823 32885.42 37481.7287 8912.0833 25473.4323 8061.1915 15939.4013 23803.0665 7494.2816 15116.233 148265954 dsra Sulfur sulfite reduction NA Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 97419.6789 8408.5565 12518.9083 3232.6712 4462.3254 4110.4893 3282.7125 4724558.1672 5860.8876 3437.0809 14860.7104 14860.7104 3949.7847 20880.8823 4475.8613 25119.502 6898.1054 3940.9618 4943.763 8110.7579 17942.6423 9067.903 7257.4186 2758.5637 2519.4361 4459.7311 7455.0025 257171269 chitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 44828.6537 10721.8822 15096.4483 19617.1217 2560.9271 6543.4783 3957.6393 7850.3047 7577.9792 180737.4591 7976.6591 5128.6082 9478.3296 3874.2506 3874.2506 10765.9036 24013.2893 12927.7184 143280.7415 6096.7498 5194.327 13141.121 11795.7862 30279.9727 23845.2023 9586.1479 6023.2526 11384.2986 23375.5148 7177.8714 6952.6562 157804846 aps_apra Sulfur adenylylsulfate reductase NA Rhabdochromatium marinum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rhabdochromatium; 34246.1609 44435.5883 54178.3655 10301.6551 5347.2076 7376.9176 190091.9992 111175.8174 14672.2391 17943.5716 16858.0992 331438.4432 24161.3458 27293.3661 24087.1379 18442.6953 18442.6953 56742.5061 48262.6611 18643.3698 27967.9051 24983.2196 20950.0312 21409.5819 16481.0242 24871.7268 71875.0591 50695.6455 22090.7644 50181.3814 22580.046 19668.671 29060.7229 14196.0578 23489.7817 375007837 chrr Metal Homeostasis Chromium Detoxification Geobacillus thermoleovorans CCB_US3_UF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 6231.9587 4396.0874 33770.8559 7487.0096 7865.537 16180.2333 6394.6289 4807.4473 85409.0373 6387.2368 5185.976 7760.7484 5669.6619 5669.6619 11288.3622 5875.8744 8933.3197 7898.5607 5072.182 4190.9462 9061.2249 6558.8382 10136.0826 13949.3275 9686.0299 5833.5916 5597.2 10941.7613 4984.981 119897205 terc Metal Homeostasis Tellurium Detoxification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 21982.4468 6270.0028 13664.5491 8785.9191 10752.6407 11685.3557 5363.6673 11726.0538 35159.1319 56720.3733 280100.9612 13540.1482 12707.9894 11743.2602 9958.6329 9958.6329 8313.3109 17993.6705 16036.7491 13547.224 19237.7141 15604.3865 8326.3299 7961.0183 16296.5559 19960.7949 38671.7819 14821.2698 17497.0175 8336.5692 9053.2392 10938.5312 8139.8636 19242.5412 162285080 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 8336.2655 46498.4012 26700.1544 51173.8121 9111.1963 4680.0897 35521.0772 3320.2916 6985.4666 4212.0284 57989.2723 6957.1776 7305.8301 4404.1798 3910.7086 3910.7086 4052.4848 10294.559 8549.5266 8691.6057 17694.2855 9222.3108 131963.1363 6155.1326 15010.6203 8998.1525 20848.5893 18345.4104 11261.4472 5278.3638 6779.2699 6985.764 7632.4187 19631.5396 359836138 cda Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 97744.054 4723.4415 5296.4943 5798.2604 5490.8142 8434.354 76294.5216 8907.2003 5340.5243 3288.5194 3288.5194 13876.1788 8188.96 7216.2452 54136.4229 2502.327 3428.4558 5907.3575 5046.2623 32509.1546 11385.6921 6432.4574 1988.4561 8335.1272 6216.1043 10318.0152 79036.0866 269790867 mer Metal Homeostasis Mercury Detoxification Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 8515.8954 33478.948 2256.5072 4907.1194 8821.8519 3664.0466 4788.4217 4214.0575 89336.873 6034.6465 6085.8314 7697.837 5099.1665 5099.1665 4286.6355 11818.2497 7208.7435 5489.5987 18102.2187 7352.1404 5064.9096 3762.6854 7937.7668 3616.3913 11751.9467 9767.3479 13070.1377 4266.5885 5814.3478 5187.4851 3210.8766 7370.794 39650472 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 24621.8319 10216.8289 16863.3698 154136.9809 31993.6292 23782.2417 12629.1281 6520.9079 15691.6055 15017.0628 13367.8737 417250.8582 16666.9195 19920.0524 57662.4891 35712.2525 35712.2525 15552.8487 108561.7803 18458.1379 14122.4717 47941.6165 39885.5045 41376.424 10973.9655 28527.2071 19683.5843 50187.4074 111915.9132 67556.5495 9510.0223 15294.2242 21013.5102 41240.3726 22411.7748 197104151 narg Nitrogen Denitrification NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 16865.9635 14482.4469 33416.8182 31195.5802 20986.1668 6410.5513 10845.6725 5610.1395 8060.1308 14929.3503 20442.4418 222526.2407 13193.2182 24999.0358 18838.9155 12047.3563 12047.3563 4547.5136 31438.9188 15892.2554 7581.9955 8434.7974 20312.637 8326.7845 14793.2209 17718.6186 5004.08 29484.5575 43910.7579 25804.5797 15301.148 99292.6508 14267.4027 7267.6782 7385.9668 109454988 nirs Nitrogen Denitrification NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 948652.5209 6476.4603 5439.2636 17178.6465 5979.6504 5451.7791 10915.6826 72891.0905 19215.4576 14644.0081 161962.4807 19945.5204 11628.4264 12152.0213 10916.3663 10916.3663 51406.8166 15135.7275 9643.772 9243.354 133079.2211 9793.7441 6411.1087 5682.6837 56061.506 7590.0801 28084.3487 13361.9353 19989.6503 12327.579 14661.5871 14390.0487 49726.0597 12414.3656 387892733 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens A506 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6158.5229 6997.2855 6566.7372 13882.4149 10313.1827 74994.6992 8134.2132 7101.5888 8020.1137 4576.2497 4576.2497 9898.472 17345.8232 6934.3138 12201.2448 41942.8561 8188.7082 9062.1479 3996.1782 9655.6953 13800.3819 11000.5294 2609.0633 8697.5973 15577.3152 4176.708 5338.0983 298291286 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 249424.686 44775.4361 93977.2192 84475.087 220240.0556 41616.6538 125838.1426 112040.4748 82985.6413 100681.7202 127335.4065 103802.6092 1753186.0054 130725.9663 100120.3959 196579.6234 107484.2514 107484.2514 98291.8232 150449.237 88527.3844 226043.2744 174233.2891 157918.5361 74029.3683 75444.152 140509.9644 91284.3691 371263.3026 170238.9569 176579.2865 72731.8514 111641.3955 109822.7403 90568.603 184783.9496 29604818 ben_bcla virulence NA NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 6145.0052 612125.5945 23660.7555 18560.0824 4770.649 2937.8939 5020.7221 5406.771 2263.1941 2263.1941 3747.9745 14300.3463 5261.0815 4743.3484 2966.6264 3816.2894 9507.5341 3053.5213 10219.3032 7515.9793 9351.2939 3138.7447 4101.0068 4481.5891 2675.0005 7217.9791 326385577 bphd Organic Remediation Aromatics Polycyclic aromatics Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 13165.4051 6612.0215 8388.2889 8176.7346 10584.4637 6360.4616 1890.0997 7391.5752 9241.105 9018.6793 3553159.2168 6947.0862 65626.6759 8352.1606 11690.1409 11690.1409 6980.9541 17635.5032 8248.8621 34489.4127 14310.9045 54796.5617 7105.5489 5686.7586 10324.8489 12178.4518 17162.3876 6338.4675 18642.4557 5947.2242 7884.1532 8084.1929 10241.0575 12635.0561 313630221 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 5074.819 4317.5537 4187.1954 4916.486 4829.4653 4026.0585 137058.9791 5018.5673 5777.0228 4971.5319 2961.8851 2961.8851 4666.6515 10081.4181 6969.1134 7652.1312 6728.906 7464.8052 3249.7802 2616.7857 7952.6742 3292.0005 13487.1589 8494.5554 3287.1475 4583.1721 4149.3984 3512.2569 12913.7622 254500896 PRI Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 36859.056 8218.7953 14072.5766 11057.1058 10426.027 9046.3857 9404.9251 19134.2132 15584.0274 14560.7361 438566.7637 17008.0883 18941.7375 10683.489 11636.3429 11636.3429 11639.1075 18150.8998 14902.2169 18920.1735 22242.9961 12120.5969 12980.1154 10963.7736 21678.5444 10112.0685 35548.7349 23135.6851 22982.1563 7399.4353 11041.857 13447.8701 9133.4454 17678.4065 77382554 xyll Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 104283.2207 7302.051 19018.5808 16627.4879 62924.1483 89938.2046 11413.0351 24867.9958 31193.4321 328956.8272 29843.9656 42101.7634 9628.1665 13679.2525 13679.2525 47684.9914 20737.5112 18067.7626 7897.5281 43673.5295 21088.6621 13993.7619 29826.4119 25137.1633 14625.7017 30781.5764 19292.2294 27586.1404 11589.5073 18232.1232 26593.3486 15034.0205 23492.7854 3348099 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Fusarium oxysporum f. sp. lycopersici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 14884.3188 7794.1875 16692.4461 4715.1551 10471.8027 3214.5067 4198.9906 7147.3417 9844.4443 57483.0688 7591.1317 8071.3922 9503.7108 5576.0172 5576.0172 3094.6151 15971.1953 5046.3741 14707.0415 2981.0702 2748.159 8252.1857 2234.5303 34999.7755 8190.7533 8311.7164 4607.657 4599.1764 5450.6058 2453.6064 4769.0948 77378583 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14864.6085 154157344 amyA Carbon Cycling Carbon degradation Starch Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7138.2124 3861.709 2143.0359 223983488 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 4786.4022 11146.9244 6792.3485 3977.8153 12509.6861 3619.7152 4827.4518 5965.5077 3132.9672 129374.2076 4678.0637 7240.9769 1828.6741 1828.6741 3765.2183 9998.8725 5373.6696 6175.0245 8754.6305 3815.1055 2697.6978 4277.4429 7271.3504 2930.8033 11295.1853 4113.371 7102.3105 5116.8252 5195.5895 6579.3428 3068.4669 9364.28 214042877 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4618.6854 3212.6129 3126.8675 78901.8456 6380.6799 4183.3807 3955.2921 4765.1984 2526.6895 2704.2823 8763.5723 3619.3543 5004.6746 1639.8798 3182.2293 83718912 nosz Nitrogen Denitrification NA Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 26920.4244 24585.1978 8183.4214 35250.7861 11865.1598 19279.8254 22826.0481 37818.6771 82794.3504 250426.23 22283.124 1663641.986 33015.1223 47535.6564 30835.1523 49743.4918 49743.4918 12650.6012 133637.489 20376.6304 34209.5729 25073.6032 29068.8176 36846.5781 23256.4919 37091.1606 22095.8808 73876.0764 74608.666 44942.5933 15230.7128 32559.2823 72001.7506 61890.0762 30618.2515 166367929 terc Metal Homeostasis Tellurium Detoxification Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 5506.1264 18849.5118 4013.2521 2572.3696 7096.0804 4409.3872 2510.4689 69706.6823 5697.4892 4998.1909 5651.1326 2728.5329 2728.5329 13965.5407 6689.2565 5363.2598 8252.7991 4402.2874 2308.3497 3497.6188 6786.031 2694.6491 14740.8347 5966.6874 7108.183 3204.9327 3224.4528 5385.9196 3794.7384 17770.4821 124258931 vana Carbon Cycling Carbon degradation Vanillin/Lignin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 15977.4422 8102.1863 17204.9834 53134.3392 16027.506 10738.5912 14564.9419 5211.5812 16966.5477 21628.8067 20750.6544 404294.0571 25992.7814 20294.36 15246.3899 11305.4732 11305.4732 11895.5129 46858.1702 19751.069 17125.4262 16365.247 23804.7368 11129.2262 10407.3979 31308.0192 30364.468 64367.3803 17346.0034 24309.0482 11920.6554 12602.934 17444.1357 53092.5989 23768.7236 393770781 arsc Metal Homeostasis Arsenic Detoxification Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 9587.3916 7939.6466 9539.7002 14728.7412 7917.3152 9491.8215 10398.4461 15673.9229 15575.1144 9523.11 425759.3663 19562.9222 13068.4621 7151.1792 7604.6009 7604.6009 8505.6489 20631.2478 14892.124 12680.9184 16027.3256 18510.2039 8091.5332 12181.4495 23259.7328 10262.5923 28060.6314 18657.5278 18921.6135 9232.0033 10336.908 11250.3057 7481.5344 19516.6695 357417502 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 6944.7519 7559.2194 8041.6673 8406.4995 4551.9325 4455.1445 5666.0915 10695.9142 9234.958 152079.8715 8519.8468 110703.663 4595.821 2831.7096 2831.7096 4851.4532 12553.3971 9107.5205 13808.1669 10370.4465 6228.9662 4469.2285 5269.4831 10229.9575 6651.5567 20121.8205 13589.7378 10276.8456 7487.2913 6250.7343 6820.9771 6378.7616 11853.2611 381372067 poba Organic Remediation Aromatics Aromatic carboxylic acid Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 25349.3828 17838.6881 44023.9255 86352.9486 35263.9869 14275.8972 12039.5933 18076.0339 19591.762 19038.7299 16612.3543 12401.6998 442222.2389 25802.0118 32254.2665 21928.4253 16334.1095 16334.1095 15575.2456 29133.7481 18863.944 23285.4329 22379.7731 29637.3723 10816.7094 16417.0622 26272.6595 9259.797 48922.7924 35772.4087 31152.1923 10549.0159 15122.2158 16775.7517 12894.6265 32031.458 261359895 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 11590.046 11834.3902 96964.6856 8594.7268 11262.3854 7444.7891 7166.617 8491.7162 11724.0146 6244.0134 141055.3316 10378.2418 5926.2565 6968.0838 16791.3835 16791.3835 6337.2288 16434.2211 11790.3109 13819.461 11937.3915 10600.6147 8145.2188 7943.408 7232.8619 6515.1946 30615.5017 10351.3992 11034.2324 6302.7375 10823.1092 20873.1281 7344.7964 10848.2004 300780874 amyA Carbon Cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 3790.7223 6222.0197 8439.7912 2579.3068 2952.1408 80779.2147 3797.8783 3826.1643 2646.3048 5588.2158 4309.8793 3977.7784 4314.8692 2320.6111 6248.6257 8222.995 3836.4364 6138.1504 2501.5342 2809.2817 3551.6648 2214.0405 323471272 poba Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 20360.9509 8563.7103 9637.051 31109.7664 8230.8576 10950.3826 5959.349 10592.8021 53261.8782 7941.7556 255152.8236 16774.8728 12473.2784 11974.3072 6830.9237 6830.9237 8845.1147 14875.3283 13828.1693 16119.1997 16970.4368 22325.9328 5841.7069 8362.0328 15510.2324 10777.9805 30236.0568 19053.5565 20676.8273 6226.43 9316.2429 10392.8086 8584.1433 20345.5873 296850197 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 212156.3003 8743.8718 11015.3204 14307.372 8327.2119 32373.3782 6661.8863 13325.1036 18723.9364 13078.9747 403900.8514 20984.8032 15315.7236 14997.9319 13856.0695 13856.0695 12697.6224 26498.8126 20563.3515 17317.9002 24615.6961 63984.2316 8352.3313 11911.5367 22719.336 8345.2812 39162.9521 20959.8782 36148.507 11040.1053 18802.2486 15512.2192 13493.8146 38842.0768 62512303 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8226.5651 5393.7735 6484.6549 8641.4486 5192.4305 2881.6607 10439.7754 2667.7031 9921.085 7383.3001 9513.2755 135901.4891 12561.7867 47781.1595 12076.6907 5683.7556 5683.7556 51083.8073 42104.7986 13304.4151 5985.4151 13477.5886 9637.7251 3000.4778 21211.9026 15790.5322 14104.5384 16260.9817 9258.4811 11197.246 3603.3568 5684.6032 10191.2052 4946.2088 14807.1421 225568288 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 28117.3094 14742.4029 17544.1007 21053.5425 10584.6612 5033.458 13199.7996 13551.6865 12374.8879 20432.7072 19692.5025 10802.1674 404891.0514 22514.2231 18162.2565 22605.1961 9132.2937 9132.2937 17070.5549 26303.4819 16109.1785 31068.1896 32703.3895 28766.0813 9591.858 6074.8071 25613.389 8555.8375 35995.2232 14308.3163 26598.5733 8561.5626 13248.2396 12025.1386 9257.4694 29298.3254 206563958 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 12164.8802 6712.3889 7282.1397 8425.7536 8209.6189 4494.2764 7750.0227 16374.4529 4131.4787 277227.0293 6936.5501 9271.3037 4934.4088 4934.4088 6020.362 15466.0815 8605.1842 16173.4283 25300.1185 9074.3057 6125.3701 13113.696 14390.6658 5629.5742 24603.4366 10566.3417 17707.7234 7785.5677 7616.5716 7051.8486 9587.1997 14594.0225 90196508 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 17125.0306 388774.3183 4675.7647 8965.7705 2629.9331 10300.022 213184.9946 3803.219 4449.0637 8410.7289 34944.4782 34944.4782 7166.1876 15350.6745 10949.596 6316.2681 10251.9661 4633.0281 10446.4295 21990.5993 930450.5902 24000.0579 9580.1825 8793.9841 7697.6149 3024.574 9613.5076 4998.9792 3567.5901 379990765 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 12519.2686 31490.6467 3065.586 2928.0895 26753.2423 3274.14 7551.3523 2696.3699 4357.0464 2779.3988 3361.6544 116223000 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 19044.1755 9968.7669 30927.3405 11909.1309 14703.9885 19050.3614 5449.8582 16280.2233 27673.2058 13572.323 336523.1318 15725.9134 24545.9488 31071.6119 21625.2374 21625.2374 29035.036 20798.089 15432.1056 11256.6354 86808.4962 66229.8802 17734.4836 14307.166 18478.4558 10964.6741 55683.6611 29173.7835 27014.8043 10530.5664 18430.9668 19272.2474 6601.6167 21961.6619 121698961 axe Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 57488.8069 291347104 amyA Carbon Cycling Carbon degradation Starch Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 150001.0786 21863.1218 27992.8255 331361.4082 178357.7238 19111.1193 22092.4063 26568.1682 21087.4107 80941.5646 51292.7213 47922.6612 717357.0315 69828.3862 65460.4256 71468.0748 83103.715 83103.715 33561.4311 79787.0992 42344.1023 48585.5606 42495.938 48025.0225 68565.2638 155126.265 55111.088 42346.6211 152955.2319 52810.7395 57544.5038 22099.2035 39743.5021 32780.8716 59236.8211 185533.9997 327464764 ppx Phosphorus Polyphosphate degradation NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 30329.9025 7896.2933 37768.1127 21969.7676 8882.1059 11324.1055 10827.8796 12496.4311 11193.8918 9238.6196 249316.4473 18253.0219 9501.9107 14538.2501 21242.5321 21242.5321 5096.4298 12285.1638 15283.129 28555.2396 9457.4752 49019.9335 6465.1204 16685.5739 14075.4257 7531.8189 50177.6944 52895.8193 15693.478 8908.2448 20724.9941 10108.4867 4897.1078 8810.4617 217415094 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 35548.6822 172804.2129 76524.286 74039.9398 28929.1376 21767.1685 28611.5668 7875.3597 20511.738 25016.2122 28708.5777 249441.9298 57696.514 45958.9629 17639.132 32300.805 32300.805 25094.6232 50760.9571 21854.9337 25551.5804 21206.7925 26935.3671 60378.4276 49885.0264 25994.5258 56898.4313 140068.2695 36297.8963 38933.5531 13647.2689 16766.1921 41419.7659 19990.0973 15665.3109 39646173 phytase Phosphorus Phytic acid hydrolysis NA Peniophora lycii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Peniophoraceae;genus:Peniophora; 28905.1148 22803.7265 40405.0455 24952.0988 22705.1327 26559.8082 27546.6902 11031.8865 27504.897 26472.3143 15352.004 596471.6356 32788.8044 29803.2183 23420.0285 37457.683 37457.683 23643.8061 33860.4585 25646.9082 27769.0865 43131.8738 42864.557 14755.416 12594.5807 45539.0483 12322.433 48332.7727 25726.6491 37001.8436 15226.4903 15884.1189 24662.7332 15558.7853 46534.7682 296128946 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 19615.8406 21279.9248 9264.4624 12048.4427 13751.423 2120.8542 17535.9715 4862.7796 20817.2213 197937.7112 7465.6704 15361.6839 39046.294 18416.5324 18416.5324 15610.6622 24638.1974 15958.6317 147181.7828 10443.6661 5490.6262 24677.2909 13895.8351 19357.2678 12667.0362 24364.468 164951.466 28369.8115 9864.9425 11498.0994 24252.0162 4337.3525 16675.1289 341572377 aps_apra Sulfur adenylylsulfate reductase NA delta proteobacterium SM-66-47 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 89568.0722 723575.1209 136486.0915 226813.9522 68362.2717 57088.6872 184904.5452 75032.7737 52088.0247 54829.3257 82149.9466 180674.2801 1757692.3267 198959.0344 231253.6257 78557.6643 101884.0238 101884.0238 38282.2035 336406.0586 57631.0681 172730.0158 158247.8617 89069.3526 117960.3772 53201.7892 93676.2672 185136.5237 349070.3489 99877.6724 145488.592 64585.7382 71832.9221 115295.049 102929.2803 140562.6938 302409758 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 20551.3552 26700.6799 23209.7813 27721.2026 5525.0421 10010.8193 19030.345 14268.4919 16873.3098 18706.6116 11159.9714 263410.2307 16204.439 19982.3264 8305.8471 18277.1517 18277.1517 13157.2495 30558.76 18751.9084 24105.7543 23383.4204 26168.3315 11545.3506 10577.455 19929.4471 8837.0529 38167.3859 15401.528 29945.8477 10044.7982 14711.0592 21727.0236 10134.333 23359.8981 409437817 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 3508.9309 11459.4386 4924.1308 9477.5631 2146.7264 13929.0968 3327.6503 3895.0698 2491.4577 211904.6249 12057.5362 11852.5091 4481.1804 2408.5955 2408.5955 3307.9422 7016.164 5211.22 4990.2607 4730.9314 37668.6831 376375.6489 7247.9633 3568.1063 12713.5082 4476.8026 7442.9655 4073.7166 3204.7723 34233.9192 3755.4573 76057013 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5153.352 13271.5003 6284.6606 5227.8672 14001.5534 4406.8001 5738.1333 4807.5184 2416.0934 46519947 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 48955.1077 21563.2691 21938.2525 11315.6013 30368.5117 25030.8334 32711.8073 23191.7721 16851.4969 19990.4622 178481.5173 41416.907 19784.241 47355.3149 19803.0512 19803.0512 18114.6658 42567.3639 17768.8873 25627.2975 22944.5083 51087.1699 16555.7343 17017.625 23291.9248 19304.7236 54750.2839 31529.0468 55762.7913 19548.9612 28806.8398 20736.3361 30489.6256 29244.743 160917767 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 51679.7509 17173.8293 7127.3189 14224.0786 9634.9882 20756.7784 12366.7852 20708.074 8688.6858 301312.0501 10671.0844 10159.0224 75280.0681 39896.421 39896.421 4114.8851 23848.6591 10782.486 23477.1218 16215.9227 25945.5754 6713.4299 14724.6963 8000.6238 6231.2183 9529.6523 8318.8313 12060.0073 9096.3377 13410.7514 12120.9667 29742.6526 8692.8608 146405358 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6772.132 33230.6348 11711.5802 8659.2312 4675.8384 47396.5069 3225.1846 11960.1728 3916.2589 76351.1781 6380.0681 8778.0414 5209.3476 2392.2431 2392.2431 8807.4913 13136.2041 34659.2111 3811.5657 7051.2242 6718.0393 4470.5922 9132.7012 11717.3656 8473.1355 45792.5262 7228.5275 11006.0514 8915.6863 9927.381 5921.6518 3690.5081 8072.7327 12001884 nifh Nitrogen Nitrogen fixation NA uncultured bacterium NR1626 superkingdom:Bacteria; 31220.6477 8462.4067 19671.2917 2531.1527 5064.2434 3664.5576 3793.5599 7251.631 6059.3463 7103.1949 3539.96 5031.798 7677.8832 7677.8832 3298.4374 13697.231 9365.7354 11965.3213 5843.1928 3316.0287 4750.9105 12201.74 4148.9596 90669.9437 12351.9215 12070.369 5806.2034 7233.4553 8798.6067 4486.1009 7666.122 124259005 chnb Organic Remediation Other Hydrocarbons NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 31130.8386 18941.4869 97228.706 50257.9449 33329.1271 16722.341 25628.8972 39525.0998 22470.6127 38300.762 38710.7376 28600.6886 702499.0904 37988.5996 34999.292 91588.3993 21729.8793 21729.8793 31224.0622 50767.7484 27521.7228 315922.8598 50347.3424 129150.4496 15900.5598 15848.9426 35608.9026 16628.0247 54038.9411 20812.3618 36861.5448 18748.1569 18835.0633 21192.9482 15635.6442 44358.3342 194013485 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 51290.8395 32869.4631 19539.54 205297.4621 6559.0949 22193.225 9264.6334 9708.8053 18754.3984 18730.0035 10938.7116 4925511.6615 69960.5646 25364.6156 20113.6982 19607.7018 19607.7018 11609.7534 31984.8672 16378.4233 17173.6726 13756.6704 153960.9633 28789.8517 15686.7168 22479.5011 14503.0672 332852.5101 56906.7974 19988.4901 11363.6776 17713.6626 25793.715 11850.8283 45552.8821 297210311 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7607.4548 6752.0958 4668.1008 6096.4368 6091.4452 73616.2457 4304.3025 32172.7372 6764.177 4827.7132 3017.8229 2552.9129 7022.2221 6205.3684 6480.6847 3816.7597 147886006 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 17955.3768 18372.3428 327632.0863 10699.8436 6562.8077 10541.1225 131645.9457 8773.1347 6258.8887 12048.5434 10842.0266 177351.8408 13820.8225 12784.8907 9008.8362 8690.0354 8690.0354 135069.3993 24043.0754 15705.4511 398238.9433 14884.8301 20153.6937 6786.295 10499.7848 15708.7365 10684.6832 27621.6524 13210.1757 19629.2943 14583.3608 12855.6269 10209.1015 6751.7458 486805.3619 12484399 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 355676.7894 4202.9382 8077.7577 2904.8654 5040.564 4629.8231 9335.6628 11073.0468 3508.4674 87686.4387 5250.8128 6869.4545 7983.2881 4611.903 4611.903 5584.2849 15886.3279 5885.8149 5647.2958 5992.1838 5486.6168 3304.863 5905.2182 10017.8351 6118.0075 13179.0365 10167.0779 14792.2745 2379.4006 5202.6975 7321.822 8729.4277 6927.1921 342861529 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 66246.3356 20429.2567 28949.8277 206622.3658 49623.8016 22814.5089 25022.927 129027.2847 109648.5133 64612.7755 195083.6939 115915.6361 1112235.4439 145872.5969 89708.9337 100279.4047 62778.1594 62778.1594 74090.2102 88642.6143 54350.3853 54867.2836 65722.0343 124971.2491 46479.9127 82056.2148 80939.1579 42708.152 199213.3788 118727.9524 97473.6709 85195.8932 74741.9102 91925.8364 46415.2653 58969.6917 353185100 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 12894.3402 82616.3081 9375.4483 18104.3833 4581.1799 5119.1826 3796.1456 13797.2904 11442.944 4875.3852 142905.914 13553.2556 9996.7692 7552.4618 26764.8425 26764.8425 8027.5363 15561.0071 15601.6982 7639.3339 15024.2731 16835.6104 6195.9569 5045.3934 20885.9127 7951.8371 78692.8972 18062.711 17033.5741 6034.8046 9569.5428 10052.0414 7635.7763 11655.9069 302679284 endochitinase Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 27641.3989 43095.7759 13552.5692 7672.7549 6833.5667 20922.4869 15445.2434 28721.7417 26120.316 38011.2039 13184.2732 611121.9493 24526.8474 25125.0561 10055.8423 11439.208 11439.208 11624.9394 33452.4918 22719.5345 21671.4132 26865.9044 31715.3964 14783.4756 17072.5435 23476.1994 40404.5887 54348.2048 23962.2107 29113.1494 15314.2119 22267.8834 15506.5528 16673.7411 37462.6639 395772892 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 6139.1958 6430.5025 7257.7168 29783.6968 25770.0254 20529.6962 14501.9971 6064.1807 9507.5037 6960.626 194029.5142 6392.7284 13204.5443 15627.7677 11586.9162 11586.9162 6053.0795 8683.0771 5833.8572 4099.5379 5816.518 3147.688 7212.1226 17929.3384 7138.3934 11901.9987 10012.5931 15375.133 4558.0222 15284.2167 6103.2158 2500.6193 372280255 phn Organic Remediation Herbicides related compound NA Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 23120.0398 7211.923 17359.1478 19054.9748 5195.034 13890.8075 6526.7393 9808.7626 9097.2111 15295.6047 6051.5367 303042.3978 20261.7118 15303.5354 9528.125 9615.0348 9615.0348 296262.5795 19031.2758 16759.7058 35262.3619 15465.1863 37163.1297 8282.1758 10300.0428 20481.7623 116829.1803 27062.0647 9562.082 17228.1986 7882.0432 32819.3028 9369.6855 6226.2287 25232.1945 296426640 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6260.0632 2894.2511 7197.0542 7380.0444 261363.9532 4241.2972 3997.1955 3997.1955 8766.3103 5339.9167 8134.2706 9750.4418 11499.7821 9394.5646 5667.4173 3638.2219 77378595 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4019.0335 3330.4769 2547.2922 1881.6381 39024.3721 8074.2802 3937.0681 79324.2523 3668.2923 7591.0784 4389.2096 2206.814 2206.814 3168.3549 7937.2366 5304.3691 4536.7533 4579.2884 4009.5706 10442.2476 2307.2062 8602.6878 3496.7179 5590.6689 3335.6367 3301.8198 3723.0429 4821.6193 108463091 arsc Metal Homeostasis Arsenic Detoxification Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 86534.2716 19688.9693 29058.5512 10803.8949 18133.1532 198199.6609 5361.2049 14897.7993 33697.35 7704.9285 2616140.0427 10498.5304 13133.756 17539.9379 12600.668 12600.668 12661.1809 18639.8907 22570.6707 43052.0156 18662.384 8423.7061 5778.0243 9766.4774 19049.0684 10608.7162 24997.7964 188411.331 27722.4522 8094.5257 20803.9965 17863.3252 7048.3265 8369.3138 353189741 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 40521.8786 15182.8075 24279.5211 13110.3403 253867.7533 9126.8976 12232.3575 24066.5369 29707.0179 32943.5502 54526.8537 23388.9998 376387.9226 28161.448 20275.9463 38908.672 27849.2451 27849.2451 61511.0405 69913.3553 35757.9127 31302.1582 124579.6556 57051.8111 70548.4401 20078.27 58135.9547 74317.0458 85077.4201 38188.6327 66877.2962 31488.076 39656.8248 54081.2454 15887.4013 133835.7598 317117894 catb Organic Remediation Aromatics BTEX and related aromatics Alicycliphilus denitrificans BC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 31407.7029 11453.4578 12178.7664 7840.9409 3961.6431 22720.987 33213.9943 13082.0627 672611.0516 29308.7695 55608.8359 17109.1906 180854.4358 180854.4358 7756.5714 51435.4592 19919.1075 25424.7133 24852.7647 8292.6288 11153.0913 10116.8856 21269.0372 10260.0635 63581.2088 21360.6764 221882.2309 14989.9751 19487.1183 48281.8837 8760.2147 58988.068 343919179 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 195376.2641 37479.7137 46675.4651 16358.4655 8922.4426 4411.8211 85780.085 8464.8862 11593.8864 10718.7222 15643.625 294147.1505 47143.5657 161263.2626 37511.2652 32491.5125 32491.5125 16712.3896 63793.1925 22201.9469 43038.3109 56529.6408 6221.768 58827.848 20482.4736 121837.2663 15342.8948 80272.9635 40933.6732 57300.4409 15579.7933 22622.3898 62057.7693 19319.4116 29363.1233 160917700 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5175.3758 5173.9742 15602.2705 6385.3639 7204.1654 4359.6152 7257.8282 7063.9738 3714.5776 216128.8319 10929.5992 4818.8579 7111.3732 4687.1537 4687.1537 7263.1113 15479.6291 9904.1648 8007.4615 12006.4222 14991.399 6698.4222 4959.5325 10212.5551 4249.7807 17951.9638 7007.3796 13179.9802 5933.0154 5856.5005 9796.3288 5073.3469 17554.473 46307950 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3869.3172 2514.2334 83929.0222 5669.923 2780.7157 5889.3027 2785.2941 4108.2554 6846.7792 8043.94 5272.8443 4339.0642 4737.556 4633558 nosz Nitrogen Denitrification NA uncultured bacterium ProE superkingdom:Bacteria; 4873.5491 4504.1278 2996.0243 2545.7017 2545.7017 3013.3995 3532.9371 4730.7132 3109.5936 9431.9018 2793.3803 5347.1875 5959.8266 2498.8503 3000.1079 7581.1435 2003.9443 77799786 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9844.1096 12518.6824 4707.0027 10459.4636 6410.5247 3081.3163 2509.8794 5808.0311 6851.0268 5314.0039 79644.2785 12528.8933 6938.6013 37336.8936 4110.5825 4110.5825 3821.6963 12260.8672 8523.0136 6963.8892 6022.4862 8752.5088 5193.2198 53197.4522 7395.0251 31573.5502 16693.2877 5007.6921 13312.4094 10583.0593 5851.5655 4787.7417 3363.482 6425.0487 334337748 cellobiase Carbon Cycling Carbon degradation Cellulose Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 6818.1249 6392.7091 18212.7563 5003.1333 28472.7246 4720.267 4197.9533 3920.0276 157138.1088 5962.5716 17860.4283 21323.7842 7125.5984 7125.5984 17086.9506 11479.9267 11164.9604 82531.4825 12921.7436 7721.262 3784.6918 25645.4274 11316.6527 4425.8926 14203.5274 9743.9666 14892.7755 17721.3587 5507.8777 4519.1507 13589.6425 46684.3142 267984668 amyA Carbon Cycling Carbon degradation Starch Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 143799.7605 52835.0277 48347.385 73660.3872 43644.1641 94840.4223 44251.7088 95760.6117 29728.9102 51534.677 95971.2093 83084.0341 823674.7494 55902.9965 89114.0933 134578.9571 70615.4854 70615.4854 41907.6995 119715.8286 74264.0632 111645.5145 578149.4792 67907.0129 49286.7835 45758.8666 67141.754 75743.5544 166428.2161 159489.3432 170466.401 77545.2392 73533.5031 71928.1895 52739.0629 88797.4844 199594031 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16211.5017 24378.4553 14601.6786 5644.6223 11009.709 45833.6575 14838.2346 16800.8295 25143.4057 35402.407 161967.615 15224.5378 14374.3901 30537.599 14307.1679 14307.1679 10235.5357 18783.4994 14237.1978 15660.9612 20547.9913 24440.5276 9426.7216 20214.4869 16914.2589 13243.089 39556.7822 17448.2868 21495.8385 5083.8442 45587.5046 21932.5932 17540.8354 20783.6228 384261977 urec Nitrogen Ammonification NA Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 7184.4866 3898.1981 12106.2775 4280.6313 7481.2611 10966.4833 10966.4833 5587.1355 14015.748 57741.9943 3158.096 4151.7751 2660.5105 11394.9399 3075.8818 3794.7339 5956.7883 5036.2557 17743141 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 15334.7362 18026.1341 6501.2206 1793.988 4234.0248 9216.0596 87355.2132 10703.807 3642.0782 3642.0782 6616.6226 6099.2726 10722.2054 13625.9466 9009.4181 14578.2808 5293.6936 4993.7477 2867.1482 15744.2892 19376.8059 2270.6078 1944410 amyA Carbon Cycling Carbon degradation Starch Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 62123.1478 13649.4171 34772.279 29017.5635 14757.285 8402.2337 76277.2569 17925.5946 13047.4134 25308.4523 32074.3909 29895.6385 652108.7678 44622.9919 26408.1396 38999.2275 23339.6251 23339.6251 24509.0851 54279.245 45839.484 54436.934 45544.6308 56444.3914 18061.7765 19355.6182 36085.1085 54301.9833 56754.1317 59878.5774 38262.5924 12995.3 22492.0085 24640.6949 17816.888 39352.9843 261283308 pme Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 19977.0036 6005.4537 6243.5599 10674.7618 66315.4874 8030.9247 16121.6492 13021.2116 22064.1187 24303.6409 217802.6261 37478.7321 10634.519 8485.0445 58564.0158 58564.0158 9761.3795 33836.8877 11175.3293 20129.7751 17218.5877 20997.2588 10509.467 8430.0185 17340.7523 16487.7017 28401.6266 9508.9499 18334.8746 7925.9973 12093.614 9946.1518 10534.827 18701.1926 177840474 tehb Metal Homeostasis Tellurium Detoxification Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 17849.7774 16002.5069 10112.1934 8282.0851 50616.0232 45163.2418 26850.9439 12187.223 15927.7538 45044.65 112058.0911 10405.6482 24605.5848 17790.0567 9542.466 9542.466 5939.8743 25283.9554 84813.3987 35680.6901 39092.0952 7871.8875 20707.6078 16323.6305 18954.3245 191171.1166 35818.7562 11150.3406 56191.4706 16407.6754 17206.6459 16540.4725 22633.8339 16362.3809 1890342 one_ring_23diox Organic Remediation Aromatics Other aromatics Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 241414.0041 24014.0161 9417.0509 78243.4695 2390.723 39109.7462 59054.8984 19447.1183 17348.9839 14830.7567 155293.0424 17493.7931 19108.3593 11932.4166 20588.2993 20588.2993 23405.2393 26099.5471 16018.1543 28493.2903 47048.3866 15478.4704 4932.6777 35690.8624 15047.6149 7860.984 42935.9272 144787.0332 62977.4378 13380.2422 65454.5945 11500.5784 7408.8472 9712.8573 383282527 amyA Carbon Cycling Carbon degradation Starch Streptococcus salivarius PS4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 4355.49 3636.9094 3383.8291 2713.7043 5296.5108 5038.5483 2428.5292 86961.7462 8772.3932 4485.2745 3495.3904 7863.9453 7880.9348 5741.0844 4139.9241 4260.99 3476.3961 2618.1069 8085.3789 1907.8808 13574.0268 4281.5104 6479.9471 1899.8572 3261.0501 4948.8005 2988.6739 7562.3457 10716967 dsra Sulfur sulfite reduction NA Desulfovibrio africanus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 6703.9332 6544.0061 1717644.8775 7347.0813 5973.5677 5801.1113 6441.5373 8180.8466 4759.5761 133939.4751 6985.8138 12444.8118 15327.9827 6325.8201 6325.8201 15536.6369 14385.075 13242.365 6299.7521 5459.8274 6085.4049 3522.0274 5298.7989 23124.082 8772.273 23797.6457 9938.2368 15966.1591 10991.7854 7952.8296 7021.7502 6115.7164 10829.0276 260773593 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 4461.2125 99092.8204 2755.807 8679.1437 4133.9821 2688.2427 148576.8936 4121.3469 9941.6689 4420.5572 5341.1106 5341.1106 45647.1246 8648.914 3712.2515 9920.0273 6073.5341 4825.5637 13645.6086 7882.0996 5131.1922 14020.7143 5351.2499 1939.1681 5168.2301 4128.5194 2599.3711 390569827 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 89280.3453 1677283.8196 7111.332 74909.9566 10389.1481 8930.3286 18102.1047 7578.1892 11193.4599 18711.7662 2549734.2581 31767.9666 10147.7472 11432.9246 17132.5512 17132.5512 25666.3365 78637.7023 15299.5288 10682.2028 9415.7489 18254.9736 13320.1763 6488.6144 20516.2532 8338.1853 72127.8802 15235.2533 13221.6335 11059.3683 13696.9601 12279.1847 59555.6407 12792.8397 34497684 napa Nitrogen Dissimilatory N reduction NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 220244.8975 76485.7334 112951.3364 228996.7456 345237.3078 68578.3025 245874.9745 132343.6524 52646.2046 85554.5352 106927.2595 173298.585 4172189.7197 111311.3287 195636.9992 150800.709 137884.4137 137884.4137 186681.1012 124908.3024 78164.6048 195192.5434 184232.5504 149728.4658 93577.6095 87222.1627 92288.4862 71156.238 370150.7244 90472.9932 121087.079 77910.9151 97754.251 160012.723 83234.7421 133966.3394 221534910 dmdA Sulfur DMSP degradation NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 13022.6625 6002.5354 10786.5786 10039.2667 11903.3449 11670.529 5389.9024 9557.2527 18433.7857 5567.2218 256869.7186 9356.1385 11374.3953 11615.336 18191.2589 18191.2589 6698.1259 19362.9045 16371.4541 16796.1211 22074.2351 17366.1784 5551.1017 28131.9601 26039.644 9806.0591 39028.7688 32127.4592 16421.0469 9870.9759 8376.272 7559.5496 9761.5585 16931.3091 214043339 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 24571.2376 18378.7548 12035.4103 11128.4547 9460.825 13403.9035 11984.957 13910.1045 24182.3995 13489.4342 232561.6177 27393.4746 12554.342 13387.089 8300.9763 8300.9763 9602.6432 161819.1319 13492.8737 18713.4308 20521.727 26478.1868 11146.3056 8685.726 16309.0703 20066.1232 36377.4221 14691.2519 27866.3264 11518.0321 11200.7548 19842.8104 7718.3984 44224.249 198248027 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 35086.708 20182.5889 38088.8657 85156.3795 36045.1253 117562.6778 46317.0946 22715.3905 25005.907 135624.7451 29062.5536 606213.5928 74802.9303 44712.6737 52720.8732 29142.3647 29142.3647 24928.2139 48140.1025 100627.1561 26735.8435 42055.318 25655.237 17975.596 71705.0798 40859.4268 22207.6582 96323.549 51217.0875 44322.4302 18236.4821 25598.4808 30911.1311 15609.1402 38400.1791 169125720 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 8881.7159 26110.2706 4606.4618 3463.6189 9720.7499 4946.7846 7700.9691 71187.5215 12860.1859 4490.6254 4547.203 4580.873 4580.873 4455.6284 14839.1838 6955.5141 188184.8087 17079.2892 5019.2649 3017.5389 6220.8794 12492.6762 3263.1863 16036.475 12028.2539 10002.4721 5582.0189 5349.5174 7704.7843 3243.5518 9914.7022 116694822 xlnd Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6167.2282 7691.49965 2969.3225 15877.34935 4390.8895 4584.48105 8073.84255 5213.341 5213.341 67183.9436 9515.6843 4792.9101 68467.95045 5945.0962 13515.18565 2523.9646 8765.6814 6231.7827 3080.9043 95779.6444 5759.11755 3740.3689 5290.22775 4403.0912 3596.7431 6964.8624 74038440 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7993.8167 68736.2491 19562.0642 684426.2987 3173.7021 4804.5381 6172.1338 7293.6762 5146.1953 88595.9291 7927.9842 7116.5446 4408.2188 5957.455 5957.455 6262.2887 21977.7681 8559.104 5515.1744 5770.119 4004.7128 5821.6603 6514.8619 7468.5162 16196.8854 10006.3686 16414.4402 4173.2954 12597.4847 6547.4404 3980.4204 8983.164 355673570 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 16897.1518 9168.9172 4114.1294 9642.2124 6461.4669 13086.9483 3194.9974 4952.9016 9649.0583 6179.7377 124374.7919 23433.2817 8953.452 5364.0804 4193.0584 4193.0584 5274.1538 15199.9176 7898.9286 12271.2376 8538.0452 9461.6593 6422.0439 4383.1832 10545.0962 5607.6521 15841.3934 5530.8749 10191.4008 4587.6427 5839.4564 8005.0228 6536.9366 23556.3135 323467931 rgl Carbon Cycling Carbon degradation Pectin Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 86574.7552 22730.8797 53451.8651 25129.7926 7276.7426 29268.1221 27688.3729 38666.6713 28820.7632 39573.8731 20565.2296 6396870.3694 27094.6285 97536.8508 64205.3615 61565.0832 61565.0832 70214.1238 59750.6873 34157.4594 59493.0229 29311.1551 23021.6618 23757.0837 17887.5049 24784.8329 33027.6313 86460.6902 80063.5038 36580.3111 12857.9788 27033.1479 24139.3251 14470.1765 115426.2338 326656851 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus XylebKG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 7668.0058 13908.412 2989.2451 5952.0035 8178.5302 10089.9082 3696.7822 83328.2572 5727.4777 4219.5402 12404.7005 11146.8293 11146.8293 3510.5972 12232.5504 8217.4652 9315.2827 5763.0967 12025.5179 5648.9862 4701.0162 7344.9297 31002.2739 15691.0672 9637.685 10513.0576 6682.5193 7201.2737 7243.0483 3602.7417 7779.989 375093907 ben_bcla virulence NA NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 7092.2377 4766.2357 5233.0496 9775.7517 20654.3503 8973.3621 11116.3831 17528.8875 18811.7562 14937.4986 187647.7407 11197.7473 9782.8992 14104.8295 11185.8128 11185.8128 3909.2301 21144.1118 8280.9692 10878.483 10005.3288 9656.1493 5559.5489 12261.6489 13811.195 5912.8036 32881.0664 12659.5501 21698.5975 10491.1564 10158.0792 9718.4294 8221.0756 39091.4114 158331912 phn Organic Remediation Herbicides related compound NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 12200.3636 7067.2959 44325.6982 10671.9374 18211.0697 6053.4468 3616.0487 17119.8526 7356.6804 6698.4863 437250.4458 8080.1907 6791.9399 8636.8386 11486.5015 11486.5015 9376.5038 15990.1393 31268.2158 5045.6802 10729.1127 13863.4939 3388.343 8860.4503 24274.9901 7443.8661 54452.8539 62952.9813 17043.3079 9169.3883 12453.2206 6341.5731 5461.8616 4436.2582 13423797 glucoamylase Carbon Cycling Carbon degradation Starch Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 47327.8079 5889.7433 3027.2216 3361.8288 4967.3801 4475.5868 10354.7699 5536.1806 8969.3887 8037.4116 11290.0161 2982.7232 2982.7232 7494.7918 46796.3703 15279.8221 7598.4018 13284.2881 7895.4021 4535.5809 6748.423 9881.0362 3383.9775 12426.4495 11613.1313 94889.4263 5918.5786 16057.81 12226.859 6437.3177 12726.7161 118174473 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 17529.5921 19731.9119 11637.234 6987.8549 5664.4163 8375.1393 7417.7123 22431.125 142081.2761 17943.1878 12359.3131 158493.6119 62323.1059 62323.1059 4371.5191 28512.087 29915.191 65804.5916 8332.956 9617.7945 19402.3362 122191.7141 16326.9529 14497.8777 117996.6415 25751.2785 19547.3124 4432.9998 9809.0876 15780.0958 4584.8362 143366.9342 68537002 ppx Phosphorus Polyphosphate degradation NA Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 27029.224 37500.5304 170492.4365 9238.238 29257.5235 12566.6667 12081.0542 11371.7777 18196.1895 15652.1201 19883.538 15811.3218 341580.159 21439.7258 29403.6874 21510.6412 13720.1958 13720.1958 44812.1329 43488.579 17860.1798 14482.2799 33392.2186 22001.8338 23708.9214 17927.9423 23204.207 16277.6867 47427.6632 14871.6236 25405.9623 11278.3141 13378.6304 18416.6025 16945.4973 29741.121 381406108 B_lactamase_A Virulence Antibiotic resistance Degradation Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4821.9703 34591.3325 18771.1191 6693.3431 4372.5369 4825.8838 2738.63 2738.63 7039.2223 4857.6886 3542.5431 14672.0936 4835.5212 6798.7248 3223.6103 3916.8604 4575.98 2774.4128 225047113 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 6890.5559 4930.0624 2301.3956 3942.7778 3841.8579 4621.5648 2511.9964 6084.1348 4787.1273 3894.4616 7900.2285 6119.7638 7937.6122 10984.3048 6033.7851 2508.1062 2758.0733 9094.809 2726.8465 10568.3551 6880.2257 8705.601 2690.8997 5373.8004 5337.7699 2617.3721 7511.7286 68230223 terc Metal Homeostasis Tellurium Detoxification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 10763.8767 6712.6288 777873.951 2685.2238 301795491 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5098.3652 6184.2339 2328.227 4874.6711 3320.8869 9100.323 83348.6189 4887.5536 10526.2537 5242.1054 2700.5877 2700.5877 3593.6292 6752.4073 6323.1729 10998.9851 3848.4611 6448.7654 2257.5391 8124.5892 6981.5484 6460.5011 2482.6075 2764.4283 3238.2467 4540.8483 8731.6451 226833058 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 63703.4814 20743.212 82291.5706 2472.8923 3234.9435 6859.6012 5561.2955 6170.7713 4937.1353 286356.4648 135929.1219 10370.1596 8696.9931 3488.8727 3488.8727 12079.2476 17308.4025 10382.9028 12232.0882 18159.0124 13595.346 12875.6593 13346.9298 20849.401 4429.4215 18239.9528 16254.6865 17261.0991 4377.7749 8214.4609 11645.8813 6605.4472 18648.5549 395009073 nfsa_2 Organic Remediation Aromatics Nitoaromatics Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 25951.5085 17687.1625 4340.2215 3678.1338 9540.6822 5579.96 13202.5452 4249.5339 6764.7212 10345.4563 10345.4563 4468.5855 3590.2862 4519.3396 2319.3638 46036.2198 3260.8713 8512.1373 4873.729 4802.0561 4898.1578 3960.1867 2346.9295 300789012 catechol_b Organic Remediation Aromatics Other aromatics Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 24971.3859 14999.6632 51620.5519 7019.7986 18895.3872 40010.9104 33173.1764 112989.9854 182615.3184 58797.4794 1426788.5351 136810.9663 64151.1536 41564.2086 44384.9989 44384.9989 81303.5433 38878.3149 54623.9617 28842.0447 87575.0599 49676.8955 44844.3747 63103.0862 24486.6488 55242.9816 21073.9204 17777.4732 27274.9434 25394.0327 42211.7772 63430.7081 25233.0606 94309.3937 213970245 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 4791.683 88360.7989 8741.6953 16632.3351 12659194 nifh Nitrogen Nitrogen fixation NA Treponema sp. ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 20324.3701 33288.6471 10330.6702 5225.6831 219318.1096 8294.9053 56906.174 126672.8747 62649.2618 18996.9362 329657.6026 94693.2965 22294.1166 12730.1586 27378.3818 27378.3818 24800.6205 47007.3547 20649.1469 24824.1098 22423.0082 12641.4068 11603.0703 19997.2046 32667.9016 21866.5964 144431.0591 36073.7521 25850.1794 26243.7779 30352.608 41130.2181 27205.3684 41629.6717 46562231 nifh Nitrogen Nitrogen fixation NA Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 28543.4493 28525.7433 59967.6802 32210.6113 78123.1199 44047.0703 236677.5614 49491.3743 105865.6794 40062.0868 28946.946 25332.4255 1947418.1551 129465.5506 32653.3827 56267.6293 27368.839 27368.839 33096.2493 48261.6387 57316.023 36171.0858 38074.3128 23891.0562 15208.4479 24116.2147 46711.5084 56076.6703 85532.8245 52285.2128 56373.5778 49293.4342 27943.0754 30317.1979 18162.1876 134198.1861 323489755 pula Carbon Cycling Carbon degradation Starch Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 7531.5046 11143.215 6179.5882 2397.4328 4405.8687 4881.3979 4701.3423 3359.7582 148701.4221 5527.8425 6351.3147 5489.4369 6975.6954 6975.6954 9714.3381 8366.9358 5511.169 5359.0877 5478.2447 4833.1055 7157.8531 4550.4472 18835.089 6690.6291 8919.7119 3910.9785 4114.6234 8399.5743 4181.6302 7690.1593 357426260 tfth Organic Remediation Aromatics Chlorinated aromatics Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 5872.0114 4390.4203 8810.7605 2729.1807 2808.286 7411.8896 4470.3924 111193.9322 29049.8776 3203.334 3203.334 9685.8233 8133.6302 5541.5425 5804.1362 7732.9149 12523.1237 3877.8751 7357.1129 15366.4129 14693.9649 7729.1537 1827.3201 3808.6613 4346.5438 4132.4399 4953.5379 225194140 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 28555.6217 45792.7562 17657.1908 56384.403 15594.0668 7738.4104 18226.5582 9048.705 33778.5872 21567.5546 34014.835 22267.5317 50348.9679 24570.8921 37004.79 28786.776 28786.776 15699.6273 41192.7584 26924.0075 29100.8503 28278.039 40470.2469 22208.4981 25316.5021 30643.8315 18189.8532 75868.0017 41058.9346 57732.8628 10373.6551 24924.247 25497.5793 29593.0395 51854.2297 332372398 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 6898.7718 21261.526 8760.6932 8085.7992 2685.3211 3744.719 3617.6436 4841.3851 3667.7519 73248.4222 6664.0265 5104.6262 5469.5247 5107.7684 5107.7684 4435.6557 12664.3177 4421.3456 3591.7875 5188.745 4958.7743 15237.4435 5079.952 9820.9247 3444.9945 13047.2468 10584.0043 8953.0071 5277.9951 6009.0989 5807.183 3877.1744 10135.8526 47572214 arsc Metal Homeostasis Arsenic Detoxification Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 37054.852 7452.0458 30329.5487 37519.8343 6203.3329 10333.8276 35732.7894 19625.7185 13309.1753 23420.7742 17476.7659 606459.5292 11820.6667 58930.3533 35136.7 13856.5458 13856.5458 8959.7934 23743.9954 19992.894 10832.7076 201780.5269 21709.0372 32406.3076 30931.0562 37482.3895 32947.535 130339.7186 20820.8185 34471.5053 14958.0147 24418.5055 34277.6005 23977.3254 85559.1558 422314221 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 100572.8852 9480.8715 11485.463 13174.9481 140050.094 27143.6622 11215.5319 29301.4652 16677.8162 54630.6633 323052.4878 26704.1066 16520.0866 24449.4015 26636.9059 26636.9059 59969.7191 38284.9514 14643.8218 20748.9235 16300.8559 13766.7236 13875.1682 13768.1111 22458.4299 9980.9261 63097.4917 12718.6687 30176.1362 29264.1231 17389.6115 15272.255 15217.2757 42564.131 219952012 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 154252.3074 102952.7024 23184.2153 22906.8948 8715.0249 18507.8287 17456.7297 13206.4761 30220.9211 60348.8961 12770.6649 419353.8795 20483.9421 108432.9646 47134.5507 17693.7014 17693.7014 15833.5749 45357.5362 21032.4114 22635.1695 37003.1456 27837.389 12323.9198 26243.0719 23369.4404 17047.7937 31247.5622 12606.1882 44277.2259 10801.5952 13866.7605 23836.1675 27716.8551 23463.6146 262198322 pula Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 5780.203 420341.001 14465.1569 3278.0063 12530.5514 4962.1712 6938.6584 11758.4228 10771.5285 7779.8296 14821.1145 4343.2109 4343.2109 3337.2166 15289.7298 6820.0584 9096.8984 26880.2259 8359.8665 2630.8461 4203.6503 13966.6747 5697.0601 14047.324 9526.4952 23758.9067 5325.5935 4882.2984 5088.4835 24943.4063 7762.0333 22135562 axe Carbon Cycling Carbon degradation Cellulose Penicillium purpurogenum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 54235.4961 50587.2866 37817.0326 66190.8528 49304.9837 7251.652 149105.2623 38473.4564 6633.7168 29355.8056 42571.0509 32475.6705 217928.6315 85912.6382 28928.8012 24146.9756 53647.7906 53647.7906 24240.4252 34347.9444 33850.8527 23809.9646 74882.734 54185.3603 43393.3797 24234.7281 89021.9885 43712.0448 445622.2855 39017.1723 113701.0844 23782.1819 94188.2911 36107.0324 61316.2888 177002.9825 14719379 chnd Organic Remediation Other Hydrocarbons NA Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 36418.749 12328.6857 14750.5247 156761.7667 18422.9777 5925.851 14938.0501 13444.2739 10594.3606 81642.0057 180538.9579 73731.8187 514229.9522 25816.9703 27897.6523 88623.1511 19902.5557 19902.5557 21920.2515 39994.9082 16235.6428 48644.8548 49868.4741 36488.229 22633.3996 14228.2293 36105.4318 15741.047 46972.2876 26018.3766 27904.9058 13600.6695 117889.4419 45807.0388 18452.5533 154646.0427 187725987 ppx Phosphorus Polyphosphate degradation NA Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 13633.8006 9528.0231 43696.0007 17406.9087 10415.7223 15899.1172 15298.6984 23123.6687 17025.0704 21119.2495 19338.2681 2345402.717 13041.0569 42956.2184 86503.3947 12753.2921 12753.2921 8777.1208 28981.4383 10798.7828 8848.1543 33556.7697 96162.8759 6735.5725 17177.5576 14229.9848 26732.7355 101094.7851 18297.7111 128102.4034 56852.5257 17057.3564 28544.179 20836.7278 17820.3348 223585860 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28145.8874 24021.512 50828.501 28241.3439 6622.9868 32701.1647 38295.5317 19652.2203 24095.9291 183142.9941 30620.1887 639309.05 32468.6419 47262.5557 39158.8694 20794.3228 20794.3228 17512.8197 48139.2792 23929.4653 37167.0715 31743.9346 28021.5326 15859.6177 23636.1321 27089.182 16999.0732 60795.8083 25545.3666 40322.7782 13105.0828 20312.5761 26457.4533 32125.6216 31830.6745 78192774 nrfa Nitrogen Dissimilatory N reduction NA Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 59544.5383 63365.1781 4640.1951 7214.4277 18635.45 7036.1394 9303.428 25540.8246 21359.3635 345666.2734 10149.5139 16828.8053 34238.4778 10976.3949 10976.3949 9147.7075 46952.5638 10441.4421 10966.1382 22899.2291 10810.4356 14022.2893 12791.9583 14637.3534 9110.5948 36243.7794 33893.7919 21820.7635 21390.0323 15871.2494 21628.9632 58970.3946 13357.3129 164455292 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10273.7426 12446.912 8636.0453 10000.1924 9197.1432 5709.1272 6031.6825 8040.3461 4621.7766 7423.9974 7901.8755 5437.0944 134908.0379 7908.3416 10966.0619 7523.7317 4103.0561 4103.0561 8923.9418 11029.5592 7581.181 8252.3314 10291.8969 8120.8727 4107.0823 5434.6497 14537.7176 5259.5628 19430.0988 7693.0167 12487.2303 10171.0311 6264.2785 7979.2954 5443.5916 9778.6323 319437711 amyA Carbon Cycling Carbon degradation Starch Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 5716.3526 9144.0724 10166.1557 2386.8372 2614.1006 2614.1006 3212.9628 5089.8117 7036.9325 4175.7811 10049.6239 1986.3187 3370.328 2384.1566 302472649 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 6539.9851 4409.5235 19791.7705 97354.1381 4955.1618 14190.0972 69355.0271 15844.1206 10362.1268 6368.3764 6368.3764 9040.3281 4558.8592 4414.1018 6149.5528 10062.8556 10607.5066 10910.9167 6043.412 6165.7016 8008.6068 17759.8965 10322.649 10610.6894 332377126 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9698.2189 7265.4584 86196934 amyA Carbon Cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7066.0895 6116.5818 6296.2732 14280.7544 3536.1532 4243.89 3335.6519 6537.4894 6603.4045 3355.4909 174475.1981 12298.2445 7897.2827 5390.8633 4048.182 4048.182 6968.2022 11534.3157 10166.6798 9006.1193 11102.7656 15440.8757 4372.9982 4849.2045 10826.9994 5202.5651 17770.6283 8419.6836 9550.6108 4290.2942 5370.1687 7562.2313 7165.6145 15580.6031 4760440 Dyp Organic Remediation halogenated compounds NA Thanatephorus cucumeris superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 6400.1122 6920.9854 23968.3256 13295.3201 2840.5164 4221.9567 5028.0965 4331.7032 5872.6947 5505.5058 3888.8909 6001.1781 6001.1781 11987.1839 26067.3644 11224.744 4648.3644 6389.6566 19379.5862 14167.6047 7665.1253 7658.7386 6732.685 21793.8046 7812.3092 9222.0458 4181.5868 8671.147 8307.7887 4515.2656 4869.1874 18034185 aps_apra Sulfur adenylylsulfate reductase NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 4965.1228 6096.6947 5059.153 3018.6705 208970502 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7463.9308 5064.4617 7069.8149 5630.8162 4210.9354 2797.6765 4785.7009 6479.5204 174783.5985 10697.3967 7620.5573 5376.0096 3970.4385 3970.4385 4544.2536 13450.9823 6831.9624 9358.0446 12581.0313 7793.2463 4718.5932 5796.4843 9767.8308 4919.5484 21041.2402 7884.2789 16796.1822 3353.8821 6359.0598 5998.2839 3553.2817 10732.6451 329297878 ppx Phosphorus Polyphosphate degradation NA Plautia stali symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 123809.1293 10788.3966 21123.6019 323058.1173 85536.1681 38577.5444 320515.9495 41750.8907 34973.0235 43399.2457 53503.0073 30108.7299 1042826.9773 41499.6854 72248.6642 70177.8445 28581.9218 28581.9218 44571.5198 81295.1968 49029.9784 51629.2181 101026.4331 52964.6401 73504.4312 63538.0509 75038.7792 35566.1956 133717.742 87887.2268 83580.8646 32668.104 40507.5019 44567.8837 33529.0404 86679.5874 295394917 merb Metal Homeostasis Mercury Detoxification Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 7795.9402 187549.9363 19111.5779 14453.121 6495.0528 4542.2241 2167.0067 9237.2906 6951.534 4127.2687 191211.0863 9297.7304 8942.5834 10740.1252 5555.5486 5555.5486 6040.5742 15679.5399 11446.7064 10825.7049 10755.8221 11207.5464 4456.4403 5703.9698 12185.7057 4534.7789 50517.5817 10547.189 17323.3864 4232.7192 6113.2078 9367.141 8377.998 14809.187 146340019 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 26099.6899 40785.1428 32589.4204 25422.3164 7516.4866 35307.6812 14036.1575 19133.2651 14480.63 25407.2783 51676.638 256898.1471 23620.2516 15351.091 19443.1539 19355.7023 19355.7023 11116.6716 56528.3613 33667.8375 19058.0193 169872.6435 41173.6519 12341.5639 23191.2073 37186.0933 26066.3963 74049.8626 24866.8028 61305.7641 17054.7557 18124.0805 29993.8849 13613.4608 23837.3848 365756905 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Elizabethkingia anophelis Ag1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia;species:Elizabethkingia anophelis; 14576.8072 68704.3455 27761.6787 3398.1141 17242.3444 8943.124 3935.3916 2545.4847 176465.7508 70724.4232 2248.9147 2248.9147 12019.1083 4885.3226 10995.1114 10134.8924 5590.5242 125237.69 5664.113 8945.4422 6745.7522 2989.1816 4200.6206 5868.8346 6953.4228 344343641 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 165543.6292 90859.3255 107821.6499 177923.9872 118066.7398 321572.4734 177635.7583 88947.578 127933.7028 200639.2569 122463.8562 1787148.8618 119052.8008 138896.5242 242374.9856 169941.983 169941.983 102080.3301 160544.7692 77937.5269 153634.7987 161941.0684 119099.755 78516.1776 87041.1458 143318.3754 76199.9717 502742.5977 170726.9881 200957.6283 90741.8499 148545.2208 127123.4846 84405.0835 298593.1277 315120559 terc Metal Homeostasis Tellurium Detoxification Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 485530.1724 78995.1611 522859.0779 368640.3957 2247597.0966 455024.4925 256735.7593 313962.3818 592744.6316 285748.286 371290.9478 233501.0685 6118140.6248 315073.9513 486321.4569 914183.3008 575389.569 575389.569 202663.3779 375929.9422 233122.2573 500564.6883 471630.9854 1522740.8253 240668.5018 210484.3721 263888.3525 189600.7769 711678.1012 644523.3043 537311.6242 375207.9843 251085.907 318447.8459 244787.3113 1190570.193 171683305 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 21071.2798 79062.4639 112252.9716 7388.4601 16010.387 11933.4205 10066.8945 10287.9127 6159.0468 49737.001 36066.0874 9859.323 376878.6285 11088.1215 17499.5406 66701.4657 17269.254 17269.254 28471.1897 27321.2311 16971.8174 12571.3262 18347.5795 36121.8676 7357.5561 10828.7743 26776.6761 16531.1949 22816.8562 13299.7261 33182.5035 11719.7475 15750.8713 19691.7544 12365.9833 19467.2692 374986438 rgl Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 24343.6867 10284.4138 119172.429 13426.4686 10723.3905 4865.3322 16187.4711 18482.1514 14619.4797 504225.7695 14696.2273 18036.1308 62735.5159 23625.6123 23625.6123 10077.8832 17467.7091 9190.833 10294.419 13603.5381 215720.4452 8327.5151 18444.9066 13323.3483 6090.7069 11371.0318 17025.4547 27891.7844 30847.9464 21788.4557 34799.7594 23054.5941 10340.5182 53854604 dsrB Sulfur sulfite reduction NA Desulfovibrio aerotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 10967.5654 42938.7078 52507.8603 3991.1543 8486.4338 6261.7273 9031.9008 6890.6422 4337.8307 122813.916 12306.1452 64930.9801 133043.6713 9130.464 6219.3101 5349.7375 5349.7375 6149.1713 27549.9338 17603.7591 27852.735 16022.1612 5626.7118 11998.3083 11091.5062 28223.6682 25479.6403 15258.5145 15875.9901 5053.7542 32955.4217 25534.5456 4189.2204 15019.3069 154159167 one_ring_12diox Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 5259.2803 350678.2853 25776.8545 2828.1402 5620.0669 3854.9915 9519.3551 79969.6326 4754.4823 3780.9428 13453.1336 13453.1336 7588.2022 105862.1214 5361.8183 8087.5092 7511.8263 3042.5142 3120.6587 4878.3103 10493.3549 4744.3949 2356.1554 3629.5222 4177.0948 5280.3272 10213.7133 385742434 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6705.8303 5347.6806 10233.563 3815.6433 1937.7967 4952.9287 3355.1033 4051.6712 20316.4531 118365.6992 17901.6144 5659.7105 17032.288 6927.7132 6927.7132 51052.1773 12684.4888 7371.5641 63094.9939 11823.2015 6185.3592 3161.5464 3735.9485 14386.7144 4777.2697 26873.6426 46170.0382 11743.0215 4335.063 21918.4523 5416.193 4557.5853 9372.1981 177842616 chitinase Carbon Cycling Carbon degradation Chitin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 14970.4239 8063.3167 5322.4386 6137.8154 14502.0601 15153.3639 11349.8062 18415.564 42378.1184 124267.7986 37874.3818 11184.6317 6831.9473 43845.8618 43845.8618 8491.1472 29952.1991 30348.3824 10152.7413 34433.7072 80664.9884 13853.092 23111.3663 15455.7448 14632.3328 76345.8808 142743.2264 31992.4469 38143.7931 15401.338 12843.2193 12633.3602 15438.1837 255707844 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6420.4578 13821.1599 31561.138 6680.9208 40381.3416 7284.4237 7586.3529 5082.2882 104362.2542 19464.522 8443.4198 12132.8413 9943.6754 9943.6754 5556.764 16120.4457 9941.6189 14662.5262 137138.6342 9564.4589 3969.0964 5170.2162 13385.0737 9116.991 33757.4816 11885.6308 13087.2778 5851.0453 11850.3274 8936.7102 8332.1582 9390.2506 334732479 terc Metal Homeostasis Tellurium Detoxification Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 113519.5388 39908.0225 24161.2141 48230.3931 281836.7142 21183.3385 15974.3988 28216.3385 24688.344 30762.957 338544.7077 23604.3385 32284.0996 30149.1768 23977.326 23977.326 41491.8393 58868.6919 48699.3494 23644.4307 27902.4196 29163.5461 24664.9265 23612.0093 40648.5638 21183.6954 74964.554 12045.4271 35674.4282 14357.464 28156.871 25334.2406 17573.1975 47347.987 209501161 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11122.1067 11824.4458 10380.2633 11445.827 9935.8182 66651.1298 8781.7226 11887.7203 44333.7716 23774.4497 163833.8362 15329.2035 23975.7827 11416.1609 9239.5632 9239.5632 10475.2372 36647.7936 13113.911 34752.5793 15493.7871 38696.6904 7986.6157 8995.3244 19973.1023 10683.5949 53346.5358 25773.1531 24684.9858 17565.0827 18819.0317 15415.8746 18068.1082 18723.8699 157285559 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9600.2601 5860.496 4898.4283 13191.4187 6324.8635 4609.6771 7073.9718 13945.7945 4905.7695 115323.5677 7058.0164 8132.5995 10789.8791 10640.4271 10640.4271 4521.7009 38147.8848 7773.754 19281.9186 33702.7279 8537.3997 10681.234 4548.8756 16911.5304 6788.2179 16027.5495 10163.1104 15012.864 5088.0378 6861.7786 15386.1454 13738.3948 11495.7728 171184896 suc_CoA_red_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 28434.8567 10763.2743 23497.0813 21154.0031 44371.1211 13420.2186 21880.4376 20748.8948 13035.622 22043.593 22879.9433 14836.8288 656401.1657 27163.2654 28652.9709 20433.1401 10819.9512 10819.9512 15228.2402 38076.0551 21771.5734 23338.8894 28005.6018 36836.7669 11384.4219 11378.3478 29610.4674 11506.773 60260.9096 26511.1299 36561.4951 11980.4778 13526.785 13185.0622 11929.7316 33506.5723 364564210 nfsb_2 Organic Remediation Aromatics Nitoaromatics Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 1115640.7858 335040375 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 17423.5146 8336.6834 20346.2454 8013.1058 10762.8337 8441.6354 8468.2327 10029.2664 11036.2349 14273.728 315150.3197 13546.4046 12395.9971 8073.649 11417.1376 11417.1376 8706.2065 18690.9861 8657.7118 18189.3498 22960.0776 16604.5667 8039.5883 10127.3018 15420.5734 7283.4679 32406.1461 7012.5314 18438.9666 6252.6881 9905.6952 11744.6019 40952.6552 18814.5617 375750947 nhh Organic Remediation Aromatics Nitoaromatics Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 7037.6908 7738.1076 78438.1574 14167.647 9624.994 19606.3629 12610.1087 6812.6709 5475.3598 184488.6205 57799.5038 16038.4177 24615.5658 16418.68 16418.68 4921.78 12042.0156 7528.4777 10024.3924 3892.479 3858.6915 5605.186 16945.6319 3620.1507 13948.075 11851.9483 20212.1813 8365.0621 6936.6914 4549.0068 3435.9652 6457.4415 110598476 amyA Carbon Cycling Carbon degradation Starch Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 21175.2383 14719.7062 15937.7067 15680.9306 11693.3834 14222.8469 10141.917 15385.3917 23351.9089 11886.8082 317912.6016 23894.675 17407.5765 19514.963 9794.5705 9794.5705 16352.0592 25304.9554 20020.148 44592.7859 47158.9819 32081.8284 9123.1082 12914.3335 27626.4665 10344.0761 37565.3699 31682.2184 29878.7722 11008.7012 14769.8695 15835.3105 13725.5588 28273.8522 359837389 ara Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 37104.1876 16309.9265 13016.0686 124227.0157 34837.084 8629.0808 86949.8619 7655.1273 14447.6352 16917.1502 7188.2926 408737.9739 18018.6304 42446.1515 21078.9792 91696.9439 91696.9439 16116.9194 25748.9908 17115.8561 23173.2803 20707.6541 17590.8547 14444.2741 10535.0992 20448.7161 15733.9476 40508.4834 22229.7733 22891.0165 8762.1623 14049.0346 15222.1596 11203.8605 32955.0544 189342180 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium sp. H25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 140818.4818 7575.9314 13556.9315 316721.482 11872.1369 44946.4183 14978.2117 3946.4438 19291.0823 11371.2076 65334.6962 382780.2341 43958.5953 43889.1734 44143.7136 26289.098 26289.098 12169.996 15914.4096 11588.1354 13173.2483 13986.3671 23209.7485 16163.2294 19390.143 52064.7924 10361.0951 206905.8917 72109.6612 33467.5988 11215.4206 16714.046 47035.1709 4795.0152 10398.3699 333937978 ppx Phosphorus Polyphosphate degradation NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 40357.8631 12479.7479 8011.4578 20867.2155 5450.6505 8117.5738 11280.0987 9139.0238 6748.8937 9376.482 9236.7553 216768.2793 8204.4013 13172.2546 21866.0571 17482.7806 17482.7806 5126.0906 15879.5768 29515.4438 19393.8911 13652.1093 141667.969 23373.5108 6706.5252 14073.4264 9560.3751 17314.9996 20301.9132 19495.5245 54468.5073 11892.836 14407.8252 7554.271 13688.2622 189428222 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 145142.8863 21155.9429 136020.2011 212394.6263 274933.861 140113.1031 592708.7839 97801.0665 85996.2322 160845.2854 122762.1048 267043.1059 2997117.592 119208.3469 181737.6644 132520.979 143872.2906 143872.2906 142068.2292 155335.9228 63357.8606 131796.1755 188801.3569 188906.4232 62883.4767 71349.1734 108989.4944 107792.3934 218496.4979 104740.3053 155421.4076 60633.0901 76976.9416 136967.5952 65389.0081 291916.5308 346921744 exaa(moxf) Organic Remediation Chlorinated solvents NA Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 5814.3965 3015.0937 4554.0868 4750.0338 6071.1053 91786.6941 5341.7607 4228.7885 4404.6899 6215.2747 10380.6659 6807.4271 6847.1461 5868.5863 6626.4565 2743.0262 3102.6909 10220.822 2608.4074 11270.5806 7335.454 7565.1749 3541.4732 4315.4121 6592.4837 3320.8201 8695.8898 164455376 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 16074.1786 43354.9256 10602.6142 16762.2402 4803.4705 17253.8964 10569.0069 5715.4808 33080.3974 12499.1433 7980.7281 188940.3671 11839.6393 17753.3787 10884.0464 6730.6323 6730.6323 11478.1691 14635.177 9500.1985 11135.7137 14482.248 15365.7986 8221.3185 8092.5084 15320.2488 9438.1919 20622.2397 13681.8739 19846.306 5770.1684 7632.9384 11737.2184 9277.5026 12601.9635 157362170 exoglucanase Carbon Cycling Carbon degradation Cellulose Polyporus arcularius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 11822.1857 619057.9258 6625.9502 5365.3751 2668.9595 12009.385 4484.9148 19792.0101 65500.3647 22435.8977 8953.0048 6119.3726 39101.4618 39101.4618 2845.6997 26007.4718 8289.6869 20580.7433 6189.271 2230.8725 6407.1559 6761.6768 3742.8872 12971.6284 22043.2179 5929.3407 3640.8744 6812.4571 13449.3254 3581.8825 5384.2311 333921456 alkb Organic Remediation Other Hydrocarbons NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4046.0118 6653.2696 5497.2406 3952.2468 3865.1541 2531.5625 5349.8928 5713.2872 5431.1281 154331.1684 5050.855 3435.5719 6444.8575 7985.9401 7985.9401 4608.4521 19095.0472 11668.6077 10797.8397 22873.7621 4919.4261 5081.601 12193.1848 8842.7108 12147.2631 9149.5438 5899.5471 14191.1744 6121.7405 9969.9282 12913.0625 3527.7512 18904.5361 300545475 amyA Carbon Cycling Carbon degradation Starch Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 61237.0617 25114.0959 25368.3079 30412.4356 12114.483 75845.6604 29071.4529 45637.7509 48987.3655 65877.4958 45836.1053 798647.7319 47570.6421 62873.0473 26987.1953 32208.9331 32208.9331 31286.4483 73548.2394 91767.3672 110121.5755 39482.913 40603.1582 32077.9326 27018.7825 42185.596 32159.4156 84448.0365 53735.2984 49402.6171 59446.4397 41043.6544 54441.395 247883.6862 79987.2856 390961049 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. CL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7947.2743 5711.5212 4851.5203 3238.8549 19295.7752 2588.908 4868.1609 5488.447 122118.4131 6617.5838 8676.475 2454.7525 2454.7525 4343.2711 9087.3986 6273.2312 6918.5515 10664.7356 9481.4524 3808.3659 4398.8347 8274.914 3449.303 16458.8493 8604.2469 2670.8217 3450.7944 4514.6182 3222.3981 9980.8606 154321485 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 13046.1883 6579.6219 7694.5919 11171.7803 5332.213 38545.7225 12595.1337 14490.2693 9032.541 12392.7069 6561.9275 2178276.7234 14376.0015 13174.2157 6449.217 4313.1961 4313.1961 6381.4468 18486.1258 11736.628 10489.6884 11343.207 15519.4779 5633.8141 6113.4951 12538.3937 22662.2451 29929.8456 11163.1916 13451.1862 7784.6701 7690.9256 12214.2881 105259.2723 16169.2303 164455698 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 126523.6695 42766.6022 46825.0006 181701.0371 19633.5326 78011.8251 77368.8752 40425.2766 64144.7898 72331.8647 42663.2873 2013669.1599 77341.6668 88337.0166 110439.1045 76416.194 76416.194 57331.939 90815.2963 76569.5061 63207.1781 76119.3773 92675.7996 45901.5862 40849.9823 67251.3866 87293.8231 136116.3189 104426.9232 82324.8762 38505.9953 64034.9054 68748.8327 53505.2228 65537.5547 394766297 nfsa_2 Organic Remediation Aromatics Nitoaromatics Actinomyces massiliensis F0489 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 6273.2897 3013.268 2543.6529 3459.172 38901.841 6312.5683 5083.2077 5195.9253 2935.822 6168.4394 15963.3662 6641.54 3837.0367 5762.6243 18938.1556 5586.5808 5403.1079 17149.8673 5614.2506 7684.9013 3304.8492 22318.3916 7143.786 4045.6267 6199.815 60476316 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5794.5885 38344.5933 7077.4459 8262.2091 86055.2945 4415.8009 7714.4481 4352.4352 8424.2737 3029.5671 5249.8766 8248.6559 6386.857 2348.8899 5538.3962 9738.416 2358.2309 338852910 ppx Phosphorus Polyphosphate degradation NA Leuconostoc sp. C2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc; 5488.2632 4157.4043 18082.665 5823.2403 101356.6937 6302.0404 2786.9807 2786.9807 2532.2824 6863.3059 4891.1172 6593.749 6226.6413 2959.7049 4688.3642 4856.598 10250.6296 5670.764 2076.625 3625.2009 4448.4778 2421.7544 32351448 nitrate_reductase Nitrogen N Assimilation NA Dunaliella salina superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Dunaliellaceae;genus:Dunaliella; 10785.936 408737.1109 2696.4865 3935.6895 161052.542 6158.1361 13580.2287 30426.5047 106426.3716 8898.5376 4652.8336 20495.8327 4814.2979 4814.2979 4733.3267 11706.7844 7054.1759 11353.8644 8074.7507 10426.2901 4618.9006 7227.4887 6928.4142 4225.9293 13419.8432 6647.6518 9787.3433 3623.9373 5933.1444 8345.6045 2470.5119 15245.2445 88810793 mer Metal Homeostasis Mercury Detoxification Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 24773.0015 7101.0238 12755.9412 4972.7811 7945.888 23045.2714 3589.0469 153885.9254 3943.2647 6655.6574 10303.7517 3574.8188 3574.8188 3559.0813 11853.6314 6040.6586 4911.1071 2830.4719 3283.2355 11445.4014 2604.5354 11764.0959 9672.1023 5548.0786 3293.2973 4482.388 4203.5364 2776.4276 224950574 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 12407.8557 3080.1348 3080.1348 56718.1063 98597.6892 143257.2202 16443.9387 298251924 endoglucanase Carbon Cycling Carbon degradation Cellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 26465.3972 6523.6931 20282.195 35842.0991 29236.4455 15113.913 9685.9028 6560.6745 10679.0598 13091.3142 6843.0154 278523.46 12844.2756 12664.798 19570.5718 10559.7382 10559.7382 10411.2432 19947.6967 11404.4652 15098.5292 11271.3622 9727.8873 8689.1478 7665.2073 22553.3464 17043.9609 23184.6251 17268.0264 21554.7754 6613.2526 10034.8359 8772.9149 5020.2916 13871.7615 254462008 phn Organic Remediation Herbicides related compound NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7319.3521 5819.6224 6886.5305 25255.9138 7907.048 34214.0621 4001.4972 6366.1687 9700.8258 4467.9646 184354.4998 11343.5926 8076.4597 6688.6594 4146.0666 4146.0666 6293.585 18050.4939 10475.0272 7680.6548 9526.3361 18604.5897 5676.814 6155.7729 12689.7828 6483.8107 19997.3866 7980.5297 13172.7632 10128.0902 7019.6513 6949.3511 6088.0919 14741.9558 350554244 amyA Carbon Cycling Carbon degradation Starch Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 17344.3446 10187.3548 14651.1437 32623.9345 4846.6966 7824.441 14582.1018 5254.8955 13924.077 16071.2528 15620.2027 279328.5222 18686.85 17003.7642 13252.4092 99593.6967 99593.6967 10769.7709 24132.2118 23838.4019 13876.1918 29030.175 30253.6851 92225.9563 15146.4148 37048.1733 14591.749 38681.3623 28638.7074 25007.0185 14960.7417 15010.0853 14417.5595 11057.082 38355.9033 85704238 B_lactamase_A Virulence Antibiotic resistance Degradation Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5684.9127 5322.6816 7233.0334 14988.9168 3052.5232 302868089 pme Carbon Cycling Carbon degradation Pectin Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 165289.6359 9293.2923 949103.6617 90495.8232 37996.5213 236722.2709 21929.4073 27925.8063 21680.4916 30993.0686 440843.2467 278278.5324 45370.7992 42000.2066 21094.24 21094.24 18516.2646 47326.7304 23362.5331 39113.9204 78620.9562 133805.3265 95559.713 17089.9012 421419.6986 136113.2158 82373.703 165894.663 112406.76 17181.0651 34706.6004 89366.2671 309621.4174 129573.0966 15807853 ppx Phosphorus Polyphosphate degradation NA Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 12717.7369 5019.5934 3922.1059 7596.3142 4625.9191 3879.3873 6144.8986 66629.8257 57471.6903 6908.544 110364.3907 6201.1644 6678.3403 5336.4075 5080.445 5080.445 12128.0699 23919.1279 14202.7142 8542.3065 48775.854 6947.6318 9891.705 9075.7668 52723.4415 26724.8385 44720.0048 56136.7686 13821.281 6011.1383 14971.7355 12492.6317 31867.1175 12692.9726 114541775 pgk Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 4091.399 5416.2574 5761.3913 2419.1434 5179.0027 8875.4618 2575.5676 126160.932 6291.4782 3073.198 3073.198 5933.9737 8234.185 6992.5832 10380.9856 9279.2589 9204.6495 2761.0357 4426.1461 6763.4295 2497.4126 13535.0896 6552.9898 7056.6524 2890.5175 6008.4482 4650.4222 2962.9627 9917.7847 367476733 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 478811.8172 101723.0794 297726.9451 209814.2383 365863.8724 56243.9022 368989.9449 193927.3404 143679.909 338891.3556 316770.3293 299113.7452 10752502.1157 382223.9568 350638.1315 674662.8982 384645.8598 384645.8598 199851.1499 281983.366 118418.5219 327046.0938 283302.4295 235261.0568 180923.651 279036.9033 287579.7017 234097.2683 620296.6886 298806.0464 508792.2082 128966.2778 198390.2606 304281.1262 162542.9198 447746.8663 115423897 alginase Carbon Cycling Carbon degradation Alginate Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 78552.914 10635.0771 76374.9232 131071.8708 17737.5448 29997.908 49960.5822 17600.4255 52437.3141 63043.5785 28524.9242 1504898.1703 30970.353 53680.1319 81208.7883 64400.1145 64400.1145 14544.2927 63410.3492 37802.568 60731.7842 52610.3157 90566.6548 16700.4768 39829.8581 49988.7124 118685.8354 66323.3221 69220.8133 39937.975 15842.4249 45793.5956 29339.8862 26660.1025 36867.1958 260645984 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 43091.3509 21390.6606 17631.2129 22972.7028 5645.2881 22255.0831 104226.4542 9482.0924 15633.2656 66178.1161 1719922.2134 16738.0146 12887.6015 19801.5381 67944.7085 67944.7085 8074.2401 31630.8516 5422.9902 23950.4087 54615.9163 6481.193 23968.6269 23581.6293 26796.824 21870.8328 25063.9279 21620.859 17588.3162 55841.621 18084.8327 14609.0361 25532.957 62827.9458 61808040 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6815.503 5769.2392 6433.406 3471.3836 5255.4375 2559.9774 4120.2896 6087.1012 4788.785 108439.9174 7319.7457 9602.915 11091.8642 17946.1709 17946.1709 4221.4939 8241.306 6979.6655 4211.6774 8511.6557 10981.5446 4247.7864 3046.6401 5723.8436 9376.3176 32514.2247 9533.1204 11487.9451 1921.3241 7103.2592 6270.7239 4763.9075 5180.9579 115375557 endochitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 27696.3016 4785.221 16247.5861 3295.9491 6696.5399 4488.839 2890.1018 175720.9655 15128.63915 5080.0265 4964.25705 4964.25705 5048.84505 14159.4378 7518.9435 7401.0945 3843.0714 4441.1757 7835.07195 3585.4325 12601.38825 6953.33305 3553.7677 9137.1612 4568.449 3260.5295 4506.5576 344225916 dsrB Sulfur sulfite reduction NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4009.0969 7559.293 3529.5565 3134.8509 6123.582 353198561 terc Metal Homeostasis Tellurium Detoxification Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4699.0362 6162.383 4649.1787 4220.9972 7441.7568 6377.4431 5030.7635 5782.1484 2908.6831 6430.3448 2681.3095 11780.4314 6524.045 7329.3587 3068.8149 2817.7795 3578.6856 7619.5069 385677085 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 14564.2732 11639.2435 68230.8529 11421.8409 12307.7098 9634.8091 9294.3291 23266.2383 20545.4312 18418.4344 30092.2183 39776.6032 1993106.4441 17201.5931 28874.4266 28348.5005 15982.0476 15982.0476 7981.0541 29124.7717 9961.2567 12522.1071 29023.4796 11141.6022 9748.6327 20855.9627 16337.7757 30404.2292 75254.0915 16161.9338 13686.7612 8430.6133 18845.622 24206.9311 12470.6931 37304.2812 82940269 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pedomicrobium sp. ACM 3067 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pedomicrobium; 7599.9693 6360.2738 5344.4006 3181.1069 7991.7815 6165.7913 3175.9018 153717.8296 7563.8924 6861.0757 5508.574 3391.1878 3391.1878 5545.1988 12722.7177 9199.3779 11954.5081 14969.0189 9000.5592 4195.295 5268.0215 11587.2663 3487.693 15133.6758 9218.1675 15122.6239 3658.1673 5979.461 5124.6295 4358.3065 14129.5771 161167819 fosa Virulence Antibiotic resistance Degradation Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 33680.9328 35948.1079 38149.3331 56231.0069 54367.9446 110080.8575 38447.1785 58346.3626 36371.0426 41851.9492 50701.5042 873758.5947 64549.0976 50440.5938 77843.1281 190557.3271 190557.3271 27802.0707 55580.6057 34433.6121 36461.614 47118.9178 75203.7881 28127.2259 54824.497 108673.3038 36378.2382 72154.5727 126763.3823 81138.8419 52645.0939 60152.3756 39840.5508 35322.2391 34748.1627 218356397 pcag Organic Remediation Aromatics Other aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 3949.7899 4258.3294 5024.4266 3054.4843 5290.767 65176.7923 3795.2736 5108.9182 3486.881 10132.4691 7067.6735 5639.1827 6167.2958 5276.2247 2384.5697 2714.4543 8993.7046 1988.5949 13604.8661 7033.2774 6194.4415 3100.0654 4253.4742 3440.8361 3614.2646 12724.7477 83749921 mer Metal Homeostasis Mercury Detoxification Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 64714.2286 23491.5621 16731.6161 263891.7434 6117.6718 7083.0758 24005.0223 9225.7181 8467.4988 12717.2547 12083.5774 291338.7172 13035.6611 37025.9051 23113.1676 20402.6455 20402.6455 9203.6327 24643.5838 20718.4714 39830.2953 32750.7334 20701.1922 14006.9653 9941.2218 83940.7298 8917.0756 26760.0833 36767.9792 27467.0196 10503.6387 14422.3749 20210.085 9694.6005 17746.8639 156232244 mcl Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 39281.1506 18576.8039 20439.4879 22613.7268 15626.3621 58614.9823 31928.075 115747.3832 6401.8238 7815.9983 41834.8174 10800.7587 10800.7587 37653.7784 45450.1022 11846.0688 32919.5641 16548.8265 72398.1964 36828.0964 12220.5165 15309.2798 23000.0759 33388.3573 23807.9434 11803.7997 15058.5395 21796.1768 24943.6094 12913.8819 316253364 cysJ Sulfur Reduction NA Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 123622.743 387623.9135 42004.7028 79495.6992 12637.8439 55365.8946 108763.2196 35220.6517 93582.1832 66030.9295 48026.3949 1486505.1931 200198.6301 182234.5704 78744.0795 44822.6622 44822.6622 50410.3929 116897.3067 48680.7795 111727.9961 70894.0645 73339.9607 70728.0498 42572.6172 77473.9969 140226.4562 163428.3854 77506.3488 188658.3114 33953.5962 96293.3887 58480.4728 34036.9894 717785.9381 2967835 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Ophiostoma novo-ulmi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Ophiostoma; 5979.1389 12959.7662 15109.011 5072.56 4745.1432 2835.0258 50518.4892 6666.9601 4578.0274 2376.3225 2376.3225 3306.5072 7672.674 4175.9344 4486.8269 6718.1287 9135.3599 2769.586 9738.5546 4741.4714 6557.1681 8480.5211 3673.3688 8859.241 3154.1401 374991450 amyA Carbon Cycling Carbon degradation Starch Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 52428.3158 23765.5246 143956.831 175882.823 71728.2438 12063.8143 26865.522 30705.3838 43275.0328 20521.4094 17576.5336 106131.9079 862379.1016 49223.7845 33201.038 47588.8331 23455.663 23455.663 82063.7987 62351.4512 32029.2826 211553.2105 38413.6422 2624848.3824 49573.4003 31957.6211 142259.3507 32478.2812 101736.3735 59685.6451 39816.3899 106334.5019 69233.7775 40801.385 23644.5828 14009.4455 339731114 cysJ Sulfur Reduction NA Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 11467.9848 11662.0297 7971.9792 8517.4539 10117.3392 6959.4233 5357.9583 13668.6354 12692.9975 6080.8453 196081.9181 12178.5007 15545.537 9752.4133 6179.0373 6179.0373 7630.8934 16042.4387 16227.0396 11546.615 16278.843 19067.8917 8833.6792 5999.0462 13814.2625 6346.375 21560.6128 12033.1774 18658.7141 6405.6074 13443.2196 9383.2241 7554.2943 13670.0867 229473042 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 19660.2017 9129.721 19635.667 11793.7919 9862.5836 5919.157 10278.775 28798.937 5767.614 202129.4393 8460.4802 8403.0129 8325.5019 5979.5382 5979.5382 39799.3989 17910.1635 11494.8398 13338.1622 17860.5751 15745.9761 9220.2131 8288.0625 11835.5881 5164.8786 17772.1909 5784.6825 15728.289 33453.9465 6874.4175 6769.7778 10614.3603 29654.9523 145019076 endochitinase Carbon Cycling Carbon degradation Chitin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 21756.1147 7161.5785 9640.3817 24488.0072 9396.9972 11051.7645 4278.5366 9820.9247 15164.1053 6788.1424 275216.1086 16175.6966 16536.6741 11361.2889 9626.1194 9626.1194 7535.8287 15436.6914 10739.0958 11214.3397 9831.5705 13222.1813 6018.4197 6680.7154 17455.2481 26159.5369 21432.603 8488.2672 14976.2146 7491.1339 11814.8294 9128.1065 9373.5658 23552.7381 55845951 nitrate_reductase Nitrogen N Assimilation NA Thalassiosira oceanica superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira; 7976.6669 4780.2478 43309.2164 8686.0903 4430.7506 57029.4727 6078.0667 10211.7216 5257.312 9986.6891 143367.6787 10695.9342 4530.5261 33231.4666 11130.4506 11130.4506 27059.2383 5668.0628 7748.6874 8629.5008 6551.828 5400.4543 10833.4191 9823.7622 2877.3838 15476.5852 15028.992 8758.001 3897.6743 10049.4451 4718.2351 4453.5934 7886.9517 395777495 catechol Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 990809.956 26597.3708 52642.6816 24473.3316 14027.1908 34506.029 24735.2214 18078.5697 27862.9231 31447.2187 31342.1916 722686.7652 34257.0947 75606.7088 78115.746 39541.6884 39541.6884 56007.6899 66303.4468 29307.7787 51895.586 70733.3969 40112.3852 41260.6338 32859.9226 49997.2272 34019.3824 87599.9648 40357.3637 78331.5328 25615.1724 26217.2874 79998.9945 24467.662 102540.8522 300073223 tktA Carbon Cycling Carbon fixation Calvin cycle Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 27412.6102 15104.5108 31751.1382 8594.066 7056.1322 13973.2263 13825.626 9509.6316 17250.9436 23076.6239 9602.8577 14152.9251 27827.0152 20255.8861 15966.0956 11909.1431 11909.1431 22317.3355 30039.5229 25002.5283 25212.5689 32939.3788 24998.919 11021.0786 12735.5729 29068.9745 8527.7122 41761.9609 27069.6692 36431.9696 10886.6444 12728.9059 17037.4964 11857.9177 34549.7787 315486029 amyA Carbon Cycling Carbon degradation Starch Eubacterium saburreum DSM 3986 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Lachnoanaerobaculum;species:Lachnoanaerobaculum saburreum; 6119.752 3679.3717 2367.6436 5564.9115 5241.8148 109496.4895 6043.9993 4726.3554 3733.9605 7698.3276 6104.4492 4909.4099 6788.5735 11073.873 3042.7803 3427.7354 7554.0366 3523.7123 14595.5449 8682.1329 3613.1113 4147.7343 5413.7652 3799.1555 7667.1117 28868696 nitro Organic Remediation Others NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 8910.419 29489.7763 7025.3607 2346.7395 9420.3835 3165.3725 4221.3451 4390.0303 63871.8078 11374.9745 11255.7738 12908.4128 12908.4128 4916.915 14009.0997 8396.3616 14618.641 10937.8555 10069.1998 7631.9469 9826.9227 5584.9692 3721.9085 24624.1039 4637.0115 8970.3978 4321.2181 10737.9945 21478.9229 5692.2149 7574.5713 357070885 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5638.5281 8728.064 4246.9496 11631.8007 22025.9557 4579.621 6715.2544 16170.9806 4750.33 21488.3718 9705.1747 80491.3567 12852.5163 12492.8287 14252.0796 9227.6153 9227.6153 5061.5191 25116.8452 11585.9567 38906.3032 80675.2324 157831.6485 55531.7272 6722.2806 14379.3065 33691.9033 43545.4231 13677.6078 16999.078 6341.706 16737.7282 39196.1663 5989.9506 121445.072 332014931 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 416752.6465 11592.4283 29906.878 5657.7689 10097.4563 7744.3635 9465.5471 246183.6583 18488.3273 168902.4248 10565.9521 10717.5148 6955.9374 6223.4742 6223.4742 4096.1736 19640.9174 15581.7967 14024.5478 12935.615 12183.523 4255.5906 7463.9957 21841.3897 5655.2368 22476.0524 7492.4387 15774.0732 6392.262 8418.9879 7530.7628 25269.6413 19297.1097 408749723 thl Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 29339.5744 24499.0938 13583.619 25471.4586 11726.9718 2616.6508 10301.9238 12579.0724 13266.1069 29390.788 17577.3056 1000142.6749 64413.4617 19624.8174 25150.0088 22674.7131 22674.7131 57735.14 125675.189 21553.9358 35322.9529 23039.7118 148158.4211 80806.0728 20364.7022 32988.1966 7384.9446 63458.0791 47920.7407 28385.9595 13032.6696 16077.6415 25374.0268 10294.6564 74350.1304 32308017 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7124.4743 2332.1572 5424.6284 7223.99 133856.422 7915.2768 12474.3226 6991.2091 6991.2091 4070.1244 30221.8774 6430.7956 6705.4597 8899.5226 16669.5139 4372.4056 4050.699 104044.3835 13319.7172 13779.3192 3742.7127 6267.1843 6504.1867 6024.2617 285026915 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 360105.6535 106108.4776 82687.7733 243296.1517 184077.0326 19414.6018 190270.9781 115123.0394 312604.7311 129061.7449 198514.7799 109119.5594 52757.0603 181971.7435 204261.1293 291616.0071 90960.0451 90960.0451 181941.4684 156308.408 105182.1026 165181.314 341284.833 95061.5802 121188.4923 117084.26 320813.1893 112148.9209 724865.3304 167790.2488 148808.7544 84729.3694 199532.3105 99020.9522 137333.6024 298631.5919 312295042 chitinase Carbon Cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 3785.3252 2331.5924 4732.0219 17896.2704 3392.8051 169625712 cutinase Carbon Cycling Carbon degradation Cutin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 11809.029 5903.3255 4796.2261 29924.1038 6381.5505 5602.4512 5361.195 88101.8913 6804.5401 4142.9848 5214.0624 10804.0045 10804.0045 3089.9908 12064.8787 13518.651 8232.8775 12315.4603 5247.1392 5648.9209 8432.4423 11398.152 8990.7879 26059.2233 14291.2268 16459.4116 4928.8407 8119.3551 11787.9966 4771.3692 5409.0431 46580503 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 9008.2464 6046.9597 8000.6147 6846.4618 7637.6277 9819.4789 7453.0198 20741.9402 7312.8082 273190.036 8796.1012 8339.7698 7030.4039 4502.387 4502.387 4241.837 15558.1088 9140.6972 596485.3321 11933.4689 13415.7377 4473.1971 5696.0369 12985.1669 6481.9147 43762.9193 11786.4328 11827.6889 19646.5053 17986.4643 8181.1482 6564.6267 13583.8763 313884657 amyA Carbon Cycling Carbon degradation Starch Eremococcus coleocola ACS-139-V-Col8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 13869.8088 16846.3059 7348.9269 6259.7061 11450.2509 6369.3012 6549.4524 5209.31 5648.3256 8067.4462 91856.083 6548.2613 118648.2122 11447.0197 10854.6017 9840.0345 6190.8834 6190.8834 5653.9571 15663.2807 11806.3055 11557.7779 11560.6161 10143.734 5386.7989 6099.8994 11854.1086 4455.7997 14380.5312 7861.9138 14193.5479 3228.4052 9018.2979 9856.0076 4784.8477 6961.0986 302879703 PRI Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 4542.2531 13997.8257 7491.9646 4651.6806 17481.665 6802.4384 3361.6661 5987.2707 11899.9222 11899.9222 5912.5915 13269.3993 4981.8029 6575.4574 2821.8155 4276.2754 3978.1676 3291.3256 3274.4661 4156.699 322396316 tktA Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 7519.7529 43566.0664 28975.2757 10881.9145 4133.2114 88160.0491 3504.6601 6190.9916 6876.4703 7862.6727 222405.7043 11032.4759 29753.5153 101556.7614 11232.4902 11232.4902 5880.0622 11636.6151 9478.5615 103580.8411 8500.856 18558.5602 6341.357 8607.7088 15143.5831 5913.0177 23671.5988 17990.4622 19462.6161 13470.7945 10396.3182 12575.7016 7741.7694 5805.1547 310799874 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 7905.3728 10936.4636 4916.9041 10195.182 9606.787 9046.0003 11764.9 11137.8763 8206.2305 29253.5729 9184.95 244028.2032 10631.2992 10207.8595 19057.5687 36216.4204 36216.4204 7031.1003 14863.2751 15359.9228 4947.9079 14099.7988 6670.1051 3894.6651 6024.0723 12163.8596 5599.8568 22902.0122 20277.0424 15016.5239 4920.2552 8549.1313 10059.1678 3611.0187 9627.0969 329851276 phytase Phosphorus Phytic acid hydrolysis NA Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 5306.9061 2902.0003 4239.5213 57912.0628 5373.6589 3944.4703 8351.9446 4947.6065 4205.1587 4908.1103 6315.0364 2369.8187 2508.8576 6012.6737 2731.7034 3608.7757 6063.6157 2779.803 4276.8346 6571.0027 90195860 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 253179.9836 18449.8833 210878.4939 200184.6458 92678.5063 40337.9581 124416.9292 88394.1451 83002.7841 69993.7046 161861.3146 135112.8855 2348750.577 89850.942 100189.004 312611.835 155178.7454 155178.7454 96260.1485 158932.9111 87757.002 94041.4171 529914.2258 209724.5482 78102.9104 126259.5709 133537.9438 138167.5556 281667.1676 281563.9738 192909.5589 97392.0029 99961.62 142362.6139 106473.4087 173030.9097 124007002 gdh Nitrogen Ammonification NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 292850.9539 19950.0761 18326.7081 36866.552 14199.1073 28738.6873 18432.2364 15903.5784 12055.9743 19339.4204 69934.5049 469277.4668 17254.1448 15057.945 16496.5188 17741.4901 17741.4901 18120.5783 32874.2261 19725.1064 25736.5808 39847.6887 17615.1858 8735.0432 10843.383 39242.3055 9624.6114 284730.7257 29951.9928 39742.399 80967.3838 33100.2678 21841.9932 6138.6415 75026.4942 110632336 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6699.2126 3580.1131 39280.531 780717 nifh Nitrogen Nitrogen fixation NA unidentified marine eubacterium superkingdom:Bacteria; 9356.9192 6343.7847 4573.2352 11244.3991 5009.2016 3532.1134 2442.3368 177930.6608 3547.1835 7893.1297 4463.4376 4463.4376 7167.3622 9780.8633 4601.7876 3972.9236 6516.6607 195038.9692 3619.4518 3379.0856 8336.155 7317.685 11286.9278 6066.1311 8404.9354 5125.6539 4856.6747 6577.9185 11047.3658 5707.9906 337750423 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4796.6907 8325.8383 4203.1779 7692.0439 8375.8805 143071.9676 16511.1015 5879.2244 7379.8074 3676.3682 3676.3682 10008.3073 4544.881 8962.8836 7046.2198 6464.6278 9252.9979 9280.2972 2554.6019 3635.3423 3411.64 374623293 tktA Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 12102.7172 5963.8449 3155.4133 4748.5922 3530.6708 2471.8386 4109.5576 35795.737 44276.6442 44276.6442 7544.562 4664.1366 13929.2426 7621.8553 4163.5365 10097.1758 7532.5228 4469.9004 5892.5366 2691.3228 260850330 mnp Carbon Cycling Carbon degradation Lignin Phellinidium ferrugineofuscum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Phellinidium; 7117.5935 5632.2496 2133.347 4408.2398 2526.9937 3875.6206 6075.4807 6474.7362 95617.8321 26552.5454 5023.9159 4080.1111 4080.1111 3215.3654 6794.349 3920.6839 5375.7045 2396.5889 3718.4897 25400.1333 3387.5618 12535.5486 6246.9199 10851.2041 4878.0207 6921.427 4793.751 8466.4716 212539978 axe Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 6402.2622 7089.7073 12432.3849 3802.1548 8398.8125 19564.7597 8004.2717 6724.5738 26709.1676 77062.988 8015.0174 10125.7883 7485.7656 11388.8894 11388.8894 6187.816 12576.4785 9187.3934 8335.5761 7000.2815 6141.2405 6496.2972 8686.1826 13999.4935 14382.0873 26201.6583 9616.5841 16443.8377 3591.1296 6201.5446 10395.0473 4117.6249 8655.6892 189172335 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4344.7077 6196.8239 4542.2533 3686.7853 325568625 cda Carbon Cycling Carbon degradation Starch Enterococcus casseliflavus ATCC 12755 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 10080.5614 5866.0639 14202.2772 16147.611 14365.5251 4464.5616 4925.2373 5262.5635 3923.7922 2366.3389 2366.3389 9077.748 4273.4554 7945.9364 6434.6931 3176.1789 3344.4503 5360.2048 354818419 amyA Carbon Cycling Carbon degradation Starch Olsenella sp. oral taxon 809 str. F0356 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 253476.0654 12192.5331 334948.318 58014.0059 88606.1995 95585.8283 354629.8097 138700.6687 129973.2707 97171.3343 136570.7311 124646.6796 3262746.3138 94742.6636 143914.3571 328211.6006 167926.8136 167926.8136 112600.0294 241439.8888 99999.5049 647543.2872 201077.3987 442152.2861 103489.455 143472.7907 145673.5931 123041.9579 463745.9212 321730.7444 129509.8989 90561.1499 98002.4444 137986.3582 59042.7691 110092.6038 94553904 poba Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 17166.6422 8918.7615 8285.1591 13998.5854 5811.2421 3543.8489 39922.6693 5537.8536 7172.0254 7626.1967 18199.8053 1206964.1975 12847.0004 14316.6488 19587.1904 24236.1816 24236.1816 35528.8409 12608.0366 9404.9168 17929.181 18720.3833 9658.9135 12998.1362 5087.7045 12244.875 6852.8379 20088.8607 27219.439 22967.0521 5824.073 10161.64 16312.0671 6462.4589 12239.3589 336010766 xylanase Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 80335.045 1856.5177 11742.3685 12364.3509 24311.6102 8542.1903 7963.2128 7140.5935 7140.5935 3316.2352 16239.3979 16196.2409 7205.9758 7865.451 8168.2201 5483.456 6190.9384 6813.5523 17775.4647 19617.3828 12552.4345 9341.865 5009.8731 11260.168 12880.1217 8276.5678 4407.0414 333992503 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 15657.6055 7966.1846 16184.4295 20353.3154 12668.3778 14094.5899 7612.225 4126.3176 11275.6069 13723.0414 6935.0309 324704.5325 17168.5209 15923.287 12768.6155 6013.8446 6013.8446 17277.0082 30577.7965 21123.0235 25194.1646 22850.1952 35989.5049 14435.4919 9701.8563 23543.1917 6913.2159 33431.8186 20761.2416 22732.5968 6582.9348 13866.8008 14385.7027 10271.856 26777.2293 83647104 norb Nitrogen Denitrification NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 81144.6057 47086.5924 45468.3631 38106.3219 15010.3139 18046.011 50545.7522 24380.8665 43392.9499 39934.8418 27580.4559 2459460.7436 40710.1013 48323.0534 48186.2688 59964.3423 59964.3423 19819.7553 58064.0603 28050.1037 36632.2016 46526.21 69801.0594 57174.4988 49504.6955 75848.5036 20572.6156 81627.0571 81355.2885 41755.8883 30692.58 35992.6171 53614.4591 19569.2212 32231.9438 84388607 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 13886.6005 6674.0541 10964.7852 8509.1613 13372.2567 10541.2822 11608.0806 16212.5528 14181.1877 5929.6511 219822.6236 14478.9242 10268.9443 12506.337 7903.3379 7903.3379 8216.8909 21654.662 15171.3443 20646.1852 14861.2985 17466.428 9531.6091 7160.2941 23751.5845 7411.2492 33038.8829 15578.9458 16896.6677 9440.5706 10254.1449 10836.885 11253.1865 20051.0138 255933586 trza Organic Remediation Herbicides related compound NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 33051.6171 3656.3266 13634.3621 57472.619 4119.1879 5255.4435 4692.4468 357226552 one_ring_23diox Organic Remediation Aromatics Other aromatics Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 3799.9948 5178.2429 2344.8377 2851.4008 23205.4474 2451.1934 3684.5475 5065.9514 3501.1215 6534.488 5521.0128 5422.8607 5049.404 7387.3668 3029.5155 4317.0401 5438.7968 1934.6099 3496.3835 3729.2714 2727.1025 7426.8465 367474368 ben_bcla virulence NA NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10192.5092 13621.695 8483.4541 756786.1476 17778.4483 11676.7606 4732.5723 8984.6731 14306.785 10127.1173 416594.0402 16149.0117 14060.7277 7581.5821 9936.4897 9936.4897 8794.8576 19698.7594 13993.4769 12152.4827 78772.2758 19708.8773 6712.4363 7828.8818 14367.9209 10921.7133 33241.9409 11828.9991 23459.2928 9898.2554 17353.8857 9792.4827 8036.8174 12426.5835 323467834 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 14447.6859 5486.6529 5728.0052 5474.4288 280178.6884 3414.3767 4014.4157 6353.395 8661.0065 16365.2723 65062.806 6693.5552 8462.6491 7811.7749 20579.4229 20579.4229 6115.3402 20407.0589 6761.5729 11000.2024 56402.2763 13969.7255 16946.2617 6427.6041 17433.7199 3705.8321 18217.7317 3988.7495 10835.2716 7656.632 5255.0855 8069.9418 4380.2634 22214.6825 159899978 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 108307.9984 17994.4176 104668.9891 867812.4202 73181.941 109141.1319 609033.978 256206.5436 55306.984 153979.4923 156936.0776 96996.5419 1356995.5558 203810.3571 156286.9003 136624.1931 140749.6987 140749.6987 41919.2583 109364.4119 68728.7862 416045.1022 188579.1403 238790.2308 133995.4838 82717.1755 94102.2912 130066.1419 225553.5962 96636.0136 114028.5629 65464.9972 63272.6673 101480.3715 110853.826 132948.08 325110611 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 44842.5046 123736.128 19697.9012 37665.3646 7834.9575 26118.772 107951.4966 22767.3562 23165.5701 24071.2883 38765.0596 348416.4637 43770.7256 64524.7144 42059.5453 151129.9411 151129.9411 91852.0323 58631.3926 27294.2769 142059.3428 48214.4382 37072.4807 32875.383 33655.1114 39635.8177 72883.8673 154372.4571 27265.9937 53037.1848 19951.4836 125551.3904 46866.2823 21686.5613 49328.4138 21623660 nirk Nitrogen Denitrification NA Hyphomicrobium denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5926.0071 21415.4495 5773.3265 9430.9798 10689.5989 2928.7153 15472.0721 5127.8634 4929.6879 13327.0112 4541.7178 4541.7178 6975.1406 4735.6439 7123.7725 5648.3234 2638.6291 4212.0724 9353.7861 3392.8704 14403.6709 4868.5367 6530.5808 3919.3198 5592.5588 5522.2896 2466.5808 12510.2796 237800099 nitro Organic Remediation Others NA Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 15826.7183 5623.1607 7662.2985 8758.9936 121856.9551 17400.4163 5969.6147 7045.7371 21108.1877 11783.7869 255926.5226 7858.2662 25923.5715 7425.0489 5539.1901 5539.1901 5821.338 19124.2231 8089.9687 10261.286 12480.6755 8413.434 3071.3038 5706.355 13927.3596 5593.8093 18665.6503 8845.575 11592.1397 4717.5406 7319.3397 8388.6677 83509.3731 10503.4839 225024493 nfsa_2 Organic Remediation Aromatics Nitoaromatics Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 44107.3926 9191.7931 10487.1729 55422.8647 5481.4752 35219.2423 26719.7242 8530.2908 28504.4105 475240.8198 25172.3388 324145.3927 24329.7079 25033.4784 21374.2273 52118.4157 52118.4157 11908.1775 67091.9103 21978.5326 26216.5405 34753.686 30798.319 12486.998 20591.6685 23436.7727 54848.3387 70675.2631 47194.4638 30705.4453 10833.0913 42538.6864 27247.4266 40412.5204 25619.6826 367048027 dehh109 Organic Remediation Chlorinated solvents NA Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 6582.1762 9232.3294 3436.4778 4559.3678 2140.2615 5370.1048 9724.9676 2955.6729 89807.6726 8915.816 7045.6301 4422.1088 2920.599 2920.599 3828.1077 12042.9516 5983.7598 5516.3876 8924.8691 11679.8917 3586.2414 3790.0622 7970.2906 4960.5221 14469.1068 9782.3717 7725.3434 3508.7321 5198.706 5126.9777 4084.9392 6890.2456 297194218 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 4389.6786 5691.8007 3244.6143 2302.8635 6694.1717 6892.0994 110135.8691 6345.7774 3097.9139 2496.7414 2496.7414 2809.8192 12431.8677 6254.2936 4859.5053 22418.4836 6247.8556 3914.4571 3677.7752 6349.8647 4282.0086 11970.8301 9024.7491 4163.3267 4484.6768 9519.8404 3220.8529 7256.5258 316981080 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 31808.6498 7079.9046 21300.2162 48732.8808 6859.3407 9963.1257 11098.5359 12770.5689 34372.7284 17199.0174 13408.4722 301249.7797 14769.1201 11396.0239 32311.7549 18503.5229 18503.5229 9288.4282 53575.7376 14197.0026 7751.198 34761.4232 38749.2955 10411.8238 16515.8889 22658.1015 9487.0955 112390.6077 39867.1023 27194.7318 10064.9132 14117.4772 11476.955 28483.1093 25418.0057 84663555 dsrB Sulfur sulfite reduction NA sulfate-reducing bacterium AR1104 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 13025.2362 162728.5576 5728.5187 14116.822 2892.3276 6670.8081 23647.132 7777.6096 185048.9286 87934.0453 53701.1468 5938.1314 42565.9753 42565.9753 11214.7585 14986.9621 11578.8894 7279.7555 20418.1608 58171.0844 7991.2965 8009.541 6882.0754 10791.832 38102.4195 9972.1517 28873.8863 6952.1669 8623.5113 10783.7656 45690.669 5732.5329 21224748 badh Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11214.9847 4669.6965 19760.3742 5751.8357 8276.1823 3326.5077 8136.5949 8804.2345 7237.2283 156921.1263 16338.3222 7678.5567 16013.7341 8795.6672 8795.6672 4972.7111 12438.7407 7339.0407 11020.2306 21360.2579 6348.7106 8622.5618 10435.7328 11809.9333 21636.3956 5780.1843 14334.8116 3618.8524 5208.2823 22490.2766 2721.22 6563.9253 59892356 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 6473.9733 3562.2157 4002.5027 368884.4327 76898.8447 4682.7156 6919.8527 7959.4405 7959.4405 13607.8287 5481.7921 272029.151 2401.0979 5125.7211 3880.7143 4593.2104 9616.0853 399238851 linb Organic Remediation Pesticides related compound NA Halogranum salarium B-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogranum;species:Halogranum salarium; 7294.9164 10686.728 2556.8098 6822.9689 4030.6788 261276.1169 7928.2575 20728.7249 2302.5116 2863.6552 3913.8147 21541.4532 4159.5916 4009.5811 10235.7034 91692879 SoxC Sulfur Sulfur Oxidation NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 13651.1258 16404.0407 64146.8127 17386.2885 8023.7288 4811.5398 15902.2164 138686.0714 12421.0337 9715.7837 9826.8148 842847.291 121270.8951 11853.4786 8288.2053 13885.9606 13885.9606 14147.2666 18546.8354 8362.4911 54477.3838 14457.0887 7465.1795 14351.381 12107.8635 30082.5286 8001.7804 21603.6678 25159.6195 22378.2535 8532.6875 31723.0029 11836.6732 3809.6958 133778496 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 26088.99385 116633.9248 14016.5855 15173.1007 5566.027 16621.88295 16979.4285 351315.12395 21137.54545 25474.5222 28577.13795 15092.47295 15092.47295 13477.10135 32573.99955 19245.33575 8671.6245 12748.6625 43941.44045 12114.33165 31700.5607 30494.6739 12447.70575 16408.9863 15841.9601 8886.5439 24291.6496 222138075 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5106.6197 6840.0096 6840.0096 1658.7602 3497.1832 89145076 ppk Phosphorus Polyphosphate synthesis NA Microbacterium foliorum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 118719.4047 32181.1618 30487.3081 30040.9573 38037.7929 13799.4676 107672.5022 144350.9872 55427.4685 32948.2236 49798.8928 52848.5309 1116085.726 55426.0748 148069.2333 126610.2875 110623.8306 110623.8306 30538.7691 58557.1955 63866.8125 180798.7274 317666.6167 48346.3481 38737.0366 86582.742 42520.4647 41543.6902 73646.03 34179.4112 53899.3496 318759.9344 37804.2192 72777.2706 46757.3315 478052.5239 325000339 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 13862.2748 4727.9618 5059.1909 374361.465 3836.9332 5824.4791 72936.0353 2677.3941 2677.3941 6247.4981 4761.2759 3571.3951 7415.5115 2649.9462 15648.6865 4205.2775 4845.1657 4421.3249 2884.4416 18034263 aps_apra Sulfur adenylylsulfate reductase NA Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 54747.7831 10815.8021 13646.1623 51639.9208 29257.5333 33074.1006 38984.288 22962.8914 12536.4693 89253.6461 26879.0015 2207438.1994 127967.5372 39986.3608 23398.5788 32024.6487 32024.6487 11127.396 42985.8292 17404.0827 21677.3986 39079.0694 25733.5705 18481.5615 27070.5364 47405.494 33467.0037 48187.2139 35135.9209 40328.7494 19940.6937 28673.83 32360.0481 19143.0063 22092.5708 118660526 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 6269.0536 14846.6672 19834.9447 6693.0886 13462.6632 4870.7104 19055.8503 5326.6826 5766.6316 6687.7975 92538.4309 4648.4773 8717.6173 6582.8627 3686.0543 3686.0543 50542.0136 13549.1991 5928.98 7668.1236 5088.1086 4072.1408 3725.4203 10347.193 5208.4543 42051.3888 15828.9175 21801.6128 6259.9953 9209.9332 10131.9724 21378.0615 11722.9154 374413681 dsra Sulfur sulfite reduction NA uncultured prokaryote 15651.3566 216577.3396 7760.1151 4518.5188 4181.0612 7054.6463 12755.9642 4275.464 10849.2104 13753.2836 17653.8932 544454.6888 10627.0932 13917.3257 16819.5879 25584.8148 25584.8148 85132.3823 25457.0207 18093.956 7994.1242 14420.0889 7595.0771 9183.5278 16012.1233 11003.1049 15642.2845 18852.2496 12235.2578 19130.54 9994.2791 13878.4584 13396.5109 8258.4989 22265.4926 320103173 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 5236.5232 8139.491 8298.5181 2966.5038 114776.4826 3481.0727 5144.4181 2776.8984 97882.885 8191.6885 6652.162 5471.9027 6310.8867 6310.8867 3219.8737 8328.1209 5133.9167 4058.4016 5000.8972 2374.8565 3487.6554 7260.8526 2746.3481 14812.6366 4879.5348 9531.5321 3264.3921 5767.7319 5112.1343 2802.6044 325979728 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5847.7951 94608.591 10021.0272 9896.5027 6923.7802 3253.6723 6019.8427 7755.7949 10092.7688 174804.4589 9009.5144 8662.7187 8539.5542 5924.0926 5924.0926 3629.4434 11746.9122 8550.5461 5042.3406 14628.2369 7449.9419 5713.1824 4045.1429 10398.1144 2525.012 18984.6562 21952.144 10816.955 3724.1599 5505.3883 5303.9307 4468.8452 11072.1128 255284099 ppk Phosphorus Polyphosphate synthesis NA Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 184705.4892 6426.4234 35695.9966 19490.965 15500.369 76453.4634 49510.0287 18487.5343 28277.7797 327842.832 10433.3389 12820.4471 19345.2443 13513.2218 13513.2218 13996.6725 50118.611 28940.979 22742.4585 30358.2249 23201.7598 13861.3304 39663.9827 32567.6697 13654.0582 60233.9488 18992.6034 26199.8664 13676.3324 25251.5389 18718.367 12957.9347 28800.8309 117959692 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 25185.3893 17632.011 9557.5609 23008.6024 6662.0217 11687.5989 20479.9276 9474.6206 13801.4541 75933.1958 10887.2812 339250.9873 22115.8297 11449.7561 17503.7123 8336.011 8336.011 11823.3579 53871.8737 16561.2682 24574.8599 36408.8049 35501.1247 37193.2116 11653.7172 30982.6021 11025.7726 41270.2505 10063.7969 18974.5496 10799.0243 14207.6597 14257.0949 7634.3395 21604.3455 302446141 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 71155.5308 12507.2215 447811.5245 11757.5899 5871.0229 2001.1955 5922.023 3885.777 2935.7193 155454.8124 5413.3095 5671.1986 14351.5956 7357.9219 7357.9219 4083.3333 14350.2883 5293.9371 7135.4542 3354.329 7229.797 10035.7788 6824.1465 8329.0948 10026.4966 8876.6144 3875.3073 5859.1397 109632807 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 394136.5634 83707.9877 122638.987 839971.5878 126076.4199 1998666.2974 334386.0597 404119.8524 83260.4914 109027.8244 126575.834 159373.4652 5681292.6318 127821.9601 449565.756 398332.4288 191946.0025 191946.0025 93998.0322 153184.2661 107469.7591 138029.215 120564.9822 146143.3668 57733.9595 86764.8813 149451.6691 117910.2154 253263.1654 107664.9277 184026.453 66446.2445 99410.0749 97964.8004 62466.3433 154466.1681 328915692 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 32709.8336 21940.0955 14718.9581 38801.9003 7545.8687 21835.573 40225.8027 13239.5762 33196.9665 22071.3353 26889.6636 311138.0219 24826.5313 202389.1021 28090.4514 19717.8574 19717.8574 25357.4198 33351.358 22027.1816 32432.8279 28341.2176 70361.0273 18122.4006 24778.1727 25736.3655 35786.7563 113415.4062 26965.5727 33938.1512 15413.2098 14806.1877 22856.6214 23124.4646 143666.2439 158109539 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 24662.186 36415.5448 22323.1791 37645.1181 35933.9971 16848.0797 22484.9013 20588.6152 19501.4391 27803.2115 28030.0049 16195.5304 693882.8383 29327.4742 83540.8016 29306.5836 32424.559 32424.559 15888.5911 55121.4008 35473.1329 36229.3567 45214.7501 26395.616 15487.8183 18156.4447 36399.1316 17537.3756 52577.6039 17451.3664 62887.3448 16988.535 18489.4218 23952.8327 14552.4665 51076.7629 295895043 sqr Sulfur Sulfide Oxidation NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 141456.3996 21017.02 71362.3521 60776.0498 126911.8329 57448.1439 95273.1601 170813.9582 91183.749 89649.2106 172141.062 117403.8391 3683409.1842 182149.8058 106207.6346 146856.0946 92161.5328 92161.5328 95506.5634 139189.329 90631.4577 146519.769 101114.2863 162704.3364 88723.0106 73494.9806 121185.8402 84526.8469 255251.8538 110869.1589 134635.5345 264007.9214 98291.4968 64333.3905 101698.1971 243639.3131 77378626 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5998.5406 8195.8873 9339.5533 5164.8735 3548.7107 6787.679 6002.8502 3184.8718 59510.2113 4129.8943 4133.646 11608.3562 4471.3249 4471.3249 3674.6435 11936.0696 7678.6812 4212.5092 6884.9721 4677.9897 5269.7253 5288.0678 9808.4232 5058.23 13519.8281 11385.7554 9234.3714 4781.5875 7303.8267 4599.4334 3479.3199 8649.657 162072830 dsrB Sulfur sulfite reduction NA Thiocystis violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 5430.8458 4325.7393 3744.8118 3209.856 4480.0607 152657.6522 4490.3423 5077.6913 4377.2437 4377.2437 3175.4134 6948.5555 4747.3378 5832.16 9469.885 5030.8193 4860.0684 7081.8887 3594.9348 10654.0919 7120.9902 8001.1066 3624.3676 5291.3307 6217.8506 5503.099 6279.5941 311218778 terc Metal Homeostasis Tellurium Detoxification Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 7349.2984 165294.3334 6545.2429 4151.2794 2950.1166 97872.9879 4489.4203 3875.5377 3875.5377 5336.7105 8528.8985 4359.7942 4690.587 6022.2015 6030.3421 3905.5673 9927.446 5280.8669 6617.7544 3788.3461 4124.5627 14082.9332 2391.6406 5246.1421 365879794 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5810.4369 75537.4694 14691.9706 4998.9193 3357.0572 5831.5887 3784.566 72456.6602 4662.7913 4863.8489 22187.6485 22187.6485 7332.7965 5719.3393 2477.0703 3913.0527 6545.1922 2596.7195 11361.4755 5278.3505 2106.2242 375819.1742 11675.0838 225171965 dsrB Sulfur sulfite reduction NA Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 5357.1355 7152.8026 3316.6466 3706.6168 4147.4259 62682.3585 7266.7772 5042.0895 3004.6309 3004.6309 2804.4619 6950.7029 5352.5668 4552.8782 4824.0675 8782.9886 2097.3247 2966.3123 6178.2148 7849.2436 7468.2842 2786.2359 3729.6572 2731.736 4302.0099 347820862 catechol Organic Remediation Aromatics Other aromatics Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 35391.7698 6434.7835 38039.8888 13830.2134 25679.8397 20235.6432 8344.8212 70231.5471 401209.0256 13667.0987 9746.2207 28039.1693 18135.5876 18135.5876 6269.1389 12662.5182 11012.9192 111883.1955 10425.1618 9696.0728 12712.0002 6723.421 8450.4614 12102.0801 129356.5002 35490.0254 28661.6544 14604.7055 7945.4333 37077.2722 16434.1853 37885.8042 157851146 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5660.9681 5621.7202 5499.7042 3521.8981 2970.2869 6484.9101 7540.8127 4152.8885 160436.5556 7234.6005 300371.7156 2738.5756 2738.5756 5341.9044 11959.2679 8823.8159 8109.6341 10422.753 8433.4529 4549.9409 4309.3225 12670.9005 3727.6887 18235.8911 7536.104 10947.6425 3045.1344 6182.6493 6910.2544 4775.0725 14215.9747 124257911 tutfdg Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. TMJ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 11454.6714 9346.2793 13668.4146 2549.2861 2972.2319 9346.1184 167729.1694 5473.6327 6985.8121 4709.3269 1968.3682 1968.3682 4828.4628 11808.3907 25410.7876 2520.3012 3775.8738 7383.5927 2362.7823 3570.7541 4579.5434 2069.7435 337749811 cda Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 114167.0809 19808.7049 55844.0644 79828.0916 108648.4852 83715.4093 67659.5057 171792.7767 117660.6172 89057.4866 68189.0043 68272.4694 1877090.3823 78306.081 133874.3123 224000.8373 120751.7033 120751.7033 59401.9937 94790.4492 65375.9868 250080.7792 112907.9302 114012.5894 101947.7872 87081.1645 94257.9415 41676.6612 149988.7805 102689.5839 97045.1117 50659.4652 69083.8896 74057.6177 37605.8618 91110.3638 220710211 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 287423.6283 15327.5377 118820.2328 66638.7908 88418.321 58756.4926 48218.7214 200060.2944 48727.0707 90549.9983 82928.9564 83795.8954 1488800.1105 205538.4258 117875.6487 170930.6409 175520.981 175520.981 127072.4681 193442.6296 50512.4296 97131.6806 120747.6832 66210.9763 71430.588 143994.1862 244830.7035 95328.675 291016.8627 115573.9258 180069.5122 71662.8853 100891.4871 137422.1797 66448.0449 101739.5558 392955639 amyA Carbon Cycling Carbon degradation Starch Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 5587.9727 5668.6401 110630.1977 2580.8398 13851.1368 729698.8831 4737.7331 6623.186 15663.9612 4819.4151 2020.8931 3569.8265 5799.9695 145593704 terc Metal Homeostasis Tellurium Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 4851.1142 18616.2459 3161.7074 4436.7178 4888.5377 5435.6534 3822.1253 4816.9724 4239.3133 5501.9549 5501.9549 7805.8375 5559.986 4827.865 2576.3985 3906.0682 24486.6835 3535.2438 51008.4818 5746.3423 5450.8349 3229.8468 49207.0868 9954.5044 218564086 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 10955.1284 27366.5297 60454.4307 6241.3463 17645.8039 5455.8569 15530.6598 6712.1279 6676.5768 9932.7474 11407.8265 14785.6889 728536.249 12959.337 25166.3933 9770.1221 8716.4481 8716.4481 9308.0364 18679.6765 8230.4391 8859.9303 25206.7584 11669.0094 32350.2984 8570.3172 10294.1897 8998.3844 51330.9617 12020.533 12601.2146 21978.0404 15162.5169 399077.2107 5113.1511 13858.664 8346964 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5668.8942 10144.9417 2495.9847 4153.0749 2474.9131 7566.2676 7230.4054 58496.0218 4466.6007 5181.5636 5181.5636 3035.123 10100.1311 7674.5558 4468.4649 6971.3827 25441.6574 3980.6678 5109.0946 8239.2937 5751.2085 9777.3183 4913.5209 6686.67 3010.2845 3796.275 11295.1895 2735.1086 6189.6264 4204384 catechol_b Organic Remediation Aromatics Other aromatics Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 15498.3865 8075.7789 14919.2633 11745.8744 5684.9379 23115.5742 47349.3206 10130.0111 22515.0295 19050.083 16600.3389 410851.3034 17240.8976 41568.9244 13837.6306 18801.9543 18801.9543 8978.6196 32396.4039 19622.1357 19465.9194 22102.9612 12794.4991 12640.2012 16214.5536 17347.0131 30758.0866 53517.23 28454.5937 24627.8011 19920.0439 18848.9714 25211.3125 21373.2392 24800.0668 355468584 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19216.0076 22185.9016 10222.2565 5991.5442 4329.7512 5800.5544 4433.8318 3800.5082 75469.3094 6890.637 5127.311 2463.32 2463.32 4622.3727 9630.0363 7905.1393 11365.6644 19973.8539 11302.775 6443.4493 9650.7131 3942.6724 13181.2071 6038.5165 8844.2446 4810.9206 7040.7905 5916.0386 5083.916 7346.6957 324108422 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 32079.8635 75197.1748 19433.552 65903.0365 7637.9337 18971.1778 53592.0402 7931.071 30913.9429 31231.8998 47146.282 497026.1594 35292.6738 54162.6768 70288.9113 347150.1489 347150.1489 18977.404 42465.5456 45559.7743 121568.9496 34074.7458 26206.3648 87329.2207 32630.4424 54807.6571 36333.1325 231433.4903 52535.5078 79249.1028 15561.6785 55202.9367 57398.1974 32768.8035 42488.8771 93357655 catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 28278.4338 19027.7162 12862.3741 23222.6878 37030.8422 11697.3955 14204.6974 23795.9125 11340.6299 25801.7564 15399.0129 10729.2904 274716.1883 17090.8162 24914.7513 27146.7598 14273.2365 14273.2365 11505.8588 29932.152 24470.5502 26028.5848 31854.1612 42797.6344 10008.4407 81595.3486 55827.3893 10942.4003 266834.3876 22940.8609 32851.8276 10923.5492 15544.8067 15971.9673 12583.4131 23470.1119 139003600 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8707.6441 57723.0934 7944.4802 11192.0385 6035.9663 4982.1403 5173.8891 3318.998 147398.7901 6507.5551 15470.8114 4884.4558 4884.4558 4578.2206 9666.5535 5126.0146 5994.1523 8727.7569 8422.4713 2874.5852 6778.3165 6513.6537 30320.7583 11312.1084 5399.058 12471.7133 5826.1938 5888.467 4674.6653 3070.2882 260593204 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 5742.7293 9541.9322 2865.4301 5421.28 4390.3934 4367.0654 5090.974 128442.3616 5126.857 5722.0153 6144.0897 7789.5832 6332.3541 6977.2987 6652.6372 3168.994 4532.8709 8242.6304 3343.4004 13515.7682 7516.6842 9366.9285 3551.3222 3859.5034 7919.7453 2791.6802 8070.8677 339285341 chitinase Carbon Cycling Carbon degradation Chitin Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 4028.2348 6219.0747 58141.5267 5945.1475 10685.5558 2940.9034 4607.1621 5691.559 3703.6833 147886242 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7962.8851 7993.7015 8758.7711 11704.1897 18463.8717 6038.6611 5095.5788 6307.9676 9742.432 6610.9862 20198.2433 4664.7691 4753.6741 4753.6741 7413.3308 13551.8425 5949.623 8855.3556 11368.8428 7721.6006 6121.4185 7787.9504 22580.6433 36067.5213 10128.1715 23923.9475 5685.9337 5353.4185 5789.499 2607.1442 10955.5201 256578339 dsra Sulfur sulfite reduction NA Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 14419.8503 5635.4601 6894.1145 16000.6775 9057.5144 14272.697 6053.4699 9180.6901 29365.6205 40723.3488 197486.0574 11891.3508 14522.2068 15204.655 12252.0561 12252.0561 8623.0977 29065.9683 11782.496 124326.6406 16826.0376 15488.1739 10074.6397 13527.2743 19292.3473 13851.5398 30927.5857 11089.6976 16893.22 8341.0307 13667.9645 33194.9391 14720.3728 14565.1277 293394518 cueo Metal Homeostasis Copper Detoxification Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 4818.4113 12057.8318 7862.8681 10518.5589 24057.3705 29093.3181 7503.5653 11870.6362 11065.2456 4852.2515 130347.6847 6831.8777 10463.444 13526.8489 8721.0092 8721.0092 7019.7512 16990.0203 6413.3197 5387.3416 17756.5786 9687.3802 2951.1007 6655.7301 10981.0897 8482.0211 12626.2592 9467.0712 13141.9887 3974.2646 5731.0569 15331.2629 4988.4169 13238.7295 302696853 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 77231.1746 16303.077 15318.8363 11137.6323 2289.4685 15267.1118 2749.5244 6835.0287 9245.3082 16371.2459 173638.2583 16703.7196 14718.1006 35026.1046 115064.5784 115064.5784 4952.4874 21844.5174 12885.4126 6285.2627 16751.9065 5059.4708 7840.6558 8937.1721 12567.9874 5785.357 29127.4318 20652.7932 19340.1736 93809.6612 12037.3236 14570.5121 4204.803 8536.1758 14276188 dsra Sulfur sulfite reduction NA Desulfosarcina variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 8917.086 7907.0476 6967.2807 72278.8721 3911.7453 25951.8357 98616.4246 22766.2255 15548.5588 32068.5279 521411.2344 28857.6173 18402.0891 20649.514 58887.5308 58887.5308 22506.915 36718.5902 18282.7553 5864.5309 93418.9894 30977.4828 16645.3504 22493.9481 23078.3697 66099.7334 50702.309 28763.0795 23362.9063 22399.8006 15208.6838 38283.8647 23518.5579 9621.7284 146310732 nfsb_2 Organic Remediation Aromatics Nitoaromatics Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 25313.461 135691.5974 16884.5609 41596.7443 7142.2583 381296.3058 17924.765 18621.9597 20515.0896 22258.0596 15894.0799 279686.2884 22251.8092 18921.0691 24504.2458 32841.8885 32841.8885 11801.4468 27568.0542 17144.2698 21004.9259 27892.4425 32091.9208 13026.5461 11912.2917 34649.7557 14380.6295 88882.2501 26655.6707 23465.7972 15330.6293 59001.5188 67634.5684 21910.6773 28356.0351 383869391 amyA Carbon Cycling Carbon degradation Starch Treponema sp. JC4 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 17186.6007 10324.0064 15201.4593 11258.8306 9768.4643 35832.0608 10713.6763 16385.477 17532.1431 9120.022 279347.0036 17025.3937 27279.5365 10302.1397 9959.6895 9959.6895 9377.7256 21107.0842 19564.3753 15724.4782 18707.938 22621.5954 7881.3513 13758.0115 15721.4942 8117.2296 36794.4458 13380.5299 16997.8866 8978.1125 13049.3888 13279.6948 14381.2546 26155.6104 72003571 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7497.9964 13330.2311 5636.1606 2989.9909 3157.9667 5509.7956 2722.0846 82409.3681 5901.1179 8245.7418 4314.3141 4314.3141 7835.4898 5039.6162 7921.9864 2950.2562 3516.1502 8362.7018 10407.9837 6900.7242 6498.4702 4168.0911 3703.7414 351681890 cda Carbon Cycling Carbon degradation Starch Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 41633.4598 98619.7555 243211.2816 6445.5041 4434.7991 25784.3763 11333.202 9073.7312 16682.5074 38513.2074 11997.3939 408655.1928 18251.6049 16318.9894 19114.2611 20894.1516 20894.1516 7642.7993 52050.4369 11930.3631 24251.628 56688.9601 13556.7222 8955.8323 15906.9885 29019.2116 15193.4035 22677.6542 21076.5 25075.0085 16446.8553 15234.1051 18336.0531 24510.5267 35500.4809 55978122 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 98870.4529 11909.1736 47563.5573 38549.418 19490.5572 11034.7876 66365.1981 36920.9718 57423.9841 43571.8208 40489.3161 68070.8665 544150.7366 75404.8538 77111.4671 66697.0049 43080.4117 43080.4117 61431.1714 65616.3949 35499.8258 59701.0894 55921.6792 73831.6152 158714.3148 46862.5483 39283.0559 38424.3729 84142.4371 60253.9868 64242.8629 44314.6067 37992.1084 105218.0533 36256.412 44267.777 217976317 PRI Carbon Cycling Carbon fixation Calvin cycle Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 15221.1652 6846.1463 13287.9125 13572.4145 29638.1198 5360.5332 9008.2771 9773.5929 8515.338 172316.1877 11995.5029 6129.7025 5925.9414 5979.6512 5979.6512 11072.971 39508.5529 19628.8633 21486.5985 14764.8812 11744.3558 6150.5384 4633.1692 16919.7219 55371.9455 22558.3463 26311.7444 13157.6382 11512.3114 9875.1547 21970.9894 15255.7692 19993.4138 77379051 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 40571.7768 12363.354 18442.3092 20081.7729 11425.4693 16049.6691 22741.3853 11672.2865 23599.4288 19769.8796 9195.343 291455.1263 15327.9263 17881.7622 13833.0684 14264.3961 14264.3961 9925.9063 23656.4783 13292.3049 18287.7553 43184.7106 29726.339 10027.3076 8661.045 59713.0603 13860.6944 36924.9959 28104.8901 26848.568 11724.1427 13297.2601 55609.7542 14264.1277 26532.6122 269306330 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 38245.8736 37146.5182 22654.4265 25534.3652 14088.5544 35816.9983 20056.6729 18124.2398 64864.3164 65109.5145 47698.1031 720611.9638 35364.3818 27910.2813 81892.1951 31683.6635 31683.6635 147217.2443 58270.6317 27427.4417 61814.2703 133004.4641 53901.9085 21984.4913 35322.3118 67891.482 61735.6946 100661.6785 31037.2956 41415.3225 21407.8076 65829.4144 32713.5816 18250.1164 39666.2879 356676131 dehh109 Organic Remediation Chlorinated solvents NA SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5804.8628 10542.3409 46667.0088 3438.5218 8327.4127 4790.5256 2730.7751 424917256 nosz Nitrogen Denitrification NA Rhizobium leguminosarum bv. trifolii WSM597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 44942.8072 24514.0836 16568.3441 14460.9938 6906.2272 8526.4771 24809.2145 10984.1698 24267.3679 29415.0999 409854.6647 24375.392 32735.7352 15837.367 13835.5973 13835.5973 7990.2162 32475.9524 13570.4468 25258.1635 34687.6798 26783.9147 12827.8126 29310.0397 30109.7022 13995.383 75472.0815 27981.7276 42314.0426 17265.4842 18230.9734 18624.1299 10727.0175 27856.3376 13249525 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6115.7715 15878.9018 7258.374 2350.0691 8858.3536 8892.8487 88723.9825 4783.4438 9487.0295 14059.1404 7831.435 7831.435 3257.8287 11300.9244 9243.032 5084.0098 3581.8444 3549.0703 10115.9295 3507.4506 11753.9838 10328.8749 9834.6942 3143.4264 7590.8522 6311.8755 320137219 bphF1 Organic Remediation Aromatics Polycyclic aromatics Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 20146.9446 12209.9308 15890.1811 8948.6348 7502.135 2589.2144 24588.7164 204200.2738 7717.4256 3568.3074 8435.7201 21542.6982 21542.6982 3392.2248 8828.2196 2392.3925 5278.6359 8834.2779 14740.981 9255.5693 4728.8768 8126.8783 2859.7803 4682.3354 4156.2109 5725.6756 7494.1534 315001622 aoxb Metal Homeostasis Arsenic Detoxification uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 4075.563 10378.0692 27376124 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 6052.8987 9996.1031 5175.6814 6410.3168 6606.3741 9991.545 10253.8232 6854.3637 162953.6316 4416.943 4288.9903 5598.9388 26300.1146 26300.1146 7072.4771 17898.2102 5504.4513 59909.1347 5054.0772 9826.7291 3715.0068 13082.295 8041.9544 26426.1932 17637.1844 14879.2008 225997.4574 19512.1792 5823.113 39427.615 17076.2308 239517082 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridiales bacterium 1_7_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 11421.838 9253.3488 7342.5479 7518.1932 3840.4655 9256.1821 7050.7621 4004.5791 138017.1499 9503.6816 8991.8403 9428.9407 3436.5524 3436.5524 5124.9217 14401.5486 7780.2155 8063.3453 8434.309 10245.1341 4454.0493 6096.116 15032.4843 4850.7199 21120.8796 9880.022 10672.6004 3095.9559 5555.9503 6407.3813 4558.2501 15561.1687 256360258 vana Carbon Cycling Carbon degradation Vanillin/Lignin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 13824.1564 5727.5533 19359.7992 29827.6995 12639.3665 7211.8173 7367.0137 2862.0579 8697.7356 14396.4276 7374.783 181938.5395 15947.6339 10526.4326 17893.9213 13130.4001 13130.4001 6918.8963 18716.148 11362.5059 10422.0039 10927.5896 12501.5133 4957.3242 9185.4128 22275.5352 8209.1868 29027.9638 15455.8325 16372.0952 6711.7822 6721.4016 6934.8847 4646.9298 8248.824 319754510 cda Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 8806.9118 2403.3509 4298.8006 15442.9773 7727.6646 108804401 poba Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 4752.1339 12267.1843 5853.78435 11528.6007 8289.68215 3060.9128 33453.47965 4198.772 6248.8777 5060.0036 141261.64065 4860.6677 4145.9834 8149.97615 6750.5313 6750.5313 3053.4348 15186.3779 6399.0286 9888.2165 8911.1291 5335.16995 2823.6885 4073.7612 7055.47015 4258.8753 10436.8084 7027.31235 8341.0584 2379.623 6353.50305 4298.27485 3328.94065 6838.4876 111022350 terc Metal Homeostasis Tellurium Detoxification Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7709.5153 4761.0407 99829.3914 113116.6708 7854.1021 5898.9869 16967.2246 17297.9009 125500.1469 11275.7598 15379.6866 35876.7702 10746.8378 10746.8378 12912.8938 18824.266 61423.5536 1072375.9875 31430.5975 20237.5088 439319.4655 7577.0551 14094.0213 295715.3467 19279.3686 18602.4006 20496.1577 308127.024 11860.0034 7924.3278 5854.3747 12577.9921 84664410 pobmo Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 3985.3311 2864.2791 4008.1407 2344.6767 116372.0612 3877.7734 5293.1933 9301.0485 5901.1573 5412.0681 5025.6763 2209.4183 3584.7329 6516.9089 2538.6821 15596.0205 13257.1198 5172.7694 2029.3223 4248.181 3066.3869 5838.8009 5768.8398 77378473 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 118626.3992 13679.7928 8868.3091 27237.5362 13417.4787 6516.25 14052.1386 8498.125 25961.2815 14407.6537 17303.2895 222003.0954 10674.2028 22912.4617 10146.816 15223.1399 15223.1399 10050.6371 70567.267 14756.8349 12427.1374 33807.8414 15794.6839 15782.5763 20172.0145 26819.5432 25057.3159 26192.091 16824.2536 48659.8031 12642.9139 22239.8572 25928.4401 15162.0679 15945.0257 83026030 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 15680.609 8335.9125 4124.5499 5765.0159 612047.85 4302.8268 31576.7151 4574.8566 4574.8566 9339.498 4125.7282 51846.0138 3083.2443 4955.5395 7011.0916 16515.6275 8567.2614 7104.5207 31905.6164 7067.7441 332670257 ara Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 22683.9354 8281.4096 20525.0408 68511.7484 44271.9134 106853.7021 18582.4815 68986.8171 22903.4997 29617.6127 15834.2945 627035.6852 25715.7334 39758.6885 70428.4192 38279.5983 38279.5983 55325.7396 32291.2716 25848.3195 10988.5466 19960.7356 16663.6045 10345.6062 30482.7626 45356.2486 21710.706 51728.1789 46660.3016 53372.5537 15117.0646 16694.9407 15904.7142 9175.2318 14613.3481 119391465 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7163.1973 9177.5429 6878.3456 3343.9876 2386.6892 7979.7938 8610.3477 9583.6322 157896.0259 10320.9019 7126.2769 8797.8794 8797.8794 4870.5247 12028.3958 6310.0738 5728.8744 10780.3358 9974.9092 3995.1033 3830.5755 7400.253 4365.0118 26652.6808 5603.2253 10941.106 3656.7977 7038.3938 8616.8243 6414.025 16234.9194 311320315 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 16137.6476 9081.4339 2542.8485 17483.876 4953.1516 11497.5094 4347.8997 12679.2061 4915.3443 16066.3764 16066.3764 10210.568 4494.9109 56154.072 3056.9933 2528.0207 9148.3099 15934.6911 2017.6618 3553.0973 5501.3396 6996.2668 7696.1394 94984863 arsc Metal Homeostasis Arsenic Detoxification Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 12513.7386 16273.407 393763.7075 7057.8837 5218.7465 8776.366 18059.2269 3300.4843 26787.0016 9274.8118 111061.8317 148779.147 19178.2484 14586.7998 16224.9487 8836.6706 8836.6706 5672.3079 35067.6788 10548.7015 10144.7016 18721.1135 17086.8342 12824.7075 12015.7436 20337.393 11725.4469 42962.468 442533.0055 38121.7762 7489.0697 21776.8693 14021.3077 18386.1856 8702.1262 297623690 mer Metal Homeostasis Mercury Detoxification Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 26606.2017 24487.7845 22420.9048 30784.9741 28673.9391 7013.0236 17669.3806 29904.5708 16860.7479 21521.1403 24764.5752 11237.0007 637030.5428 32253.2013 28787.3036 30432.582 28971.4978 28971.4978 21075.3244 32211.1921 29030.7761 32521.6539 37235.416 48874.8922 15611.0992 12849.6354 41794.1809 11786.3008 45508.7606 26472.9083 33097.1478 12836.2949 17919.9984 18273.4061 12690.5926 46373.161 70728595 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 10576.198 5071.2576 6128.1996 5254.7617 37242.8375 4333.4445 6335.0401 12650.3118 7611.4538 92546.1154 11261.2203 7210.4345 5801.6948 13699.6629 13699.6629 15478.5782 39841.7136 8283.9589 9740.9715 51453.1679 7519.9784 3904.8468 8695.7983 34318.6965 4327.2813 27738.4066 12629.0455 15865.3068 5546.519 27461.6501 9819.1052 4629.5222 8449.9803 296022695 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 196456.9923 20445.596 116025.9715 110087.1003 35759.5827 27242.774 29834.8478 135657.0501 29452.9455 83146.6496 76390.8902 112844.4959 2607296.8131 47909.7756 117506.2684 1702538.7558 244893.9859 244893.9859 32488.7736 230517.2555 41799.8092 98686.6537 594794.5704 82038.2437 189764.8924 81636.3559 61409.6266 71710.5669 144850.0994 78691.9241 107581.7203 56639.3558 75596.6279 76438.5612 323028.7323 89301.2221 87285058 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8744.7461 30513.4344 4120.8428 3090.1429 7617.4063 9445.6934 4402.6075 7383.684 3379.3576 109573.7572 5666.4164 4354.3477 5952.4331 5952.4331 3748.2976 9012.8286 7391.9256 4774.5593 7005.3931 3760.0171 3673.2198 3840.9738 8686.3673 4532.0805 13923.9447 5586.981 7780.1228 5830.4286 4576.2355 6744.2106 3875.4836 350561731 arylest Organic Remediation Aromatics Other aromatics Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 32960.4677 18901.7327 26861.7626 43603.2136 6205.7471 9065.7791 35537.637 9244.4433 49092.9699 38399.9026 13637.7335 416403.6987 22569.6023 37445.449 73691.5664 95389.7807 95389.7807 55777.2717 19075.0302 15578.7724 21410.343 18035.0637 11034.1623 6898.3055 15689.9654 56679.3374 16413.23 72673.6264 16450.7345 35617.8234 17952.0372 34684.6958 21545.0045 17019.7426 11554.554 110599524 linb Organic Remediation Pesticides related compound NA Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 12675.2488 6473.9943 2353.2362 3420.9286 5792.8356 2309.7762 2309.7762 23602.8908 7565.1808 5047.5315 63328.926 333992499 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 5060.9578 3331.6291 18546.3564 4058.2452 6517.8395 3002.7422 7947.7521 258573305 Sir Sulfur sulfite reduction NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 30544.3359 534011.7167 15457.8405 4594.0422 5874.7451 6347.258 3097.4186 3097.4186 42508.6558 33460.6374 8865.0559 13542.2363 13131.2609 27542.6563 395652333 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 6460.426 8746.3925 10362.4034 74291.6308 40787.7137 10288.5107 14555.3872 3511.4242 9098.3482 9783.9909 7938.8409 390591.664 14152.969 25881.3844 30981.1766 16494.5897 16494.5897 9138.4 10125.6313 8710.7503 3995.9609 8066.8647 5217.1126 2887.0811 9457.8089 40036.5547 7297.8478 23163.8367 21333.2202 22758.6364 8201.9401 8867.3189 13225.7635 12901.1835 6374.1402 144578837 terc Metal Homeostasis Tellurium Detoxification Ostreococcus lucimarinus CCE9901 NA 10802.3116 63305.2971 17703.8568 110579.9416 24058.2598 5158.5969 8122.5509 12642.678 9806.9454 12096.026 12086.6419 8993.3264 207281.7218 13236.3597 24838.0959 14701.2321 10966.1332 10966.1332 7272.3583 25966.5806 14964.6986 9903.6839 22080.092 61410.6459 7472.3254 10624.2427 15703.9156 11925.883 29138.7655 19872.1208 19198.5037 14350.0317 17732.585 10794.1892 16376.9116 16116.1476 373869286 amyA Carbon Cycling Carbon degradation Starch Gillisia limnaea DSM 15749 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gillisia;species:Gillisia limnaea; 8520.7953 5448.859 5244.0857 3635.5788 6742.0182 5422.8269 160097.837 6672.2524 5371.4954 2134.116 2134.116 9338.7278 9994.4273 7599.5956 6777.4736 8147.9445 6031.4949 2981.932 2660.6892 9375.6911 2839.0873 13071.6023 8060.5299 36714.0652 3289.5898 3718.981 5060.7786 3563.9993 11157.3387 359826106 nifh Nitrogen Nitrogen fixation NA Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 7898.6431 7791.7056 4113.4111 533632.0564 11974.8253 7806.6062 6731.152 8929.4004 4886.3735 230186.9165 7317.8706 5589.2419 4234.4588 3640.8162 3640.8162 2854.6272 19264.7029 9492.867 6324.887 9792.0326 4890.5481 3294.0527 4369.7013 13824.8504 4304.9967 19870.9047 11373.2793 12565.6301 9359.9701 4652.5726 11112.6848 9502.1814 15292.8406 330468466 urec Nitrogen Ammonification NA Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 22629.2576 15703.8641 30546.534 22044.9686 38720.5867 7659.6577 44303.1449 22279.6569 19773.3532 35726.5707 19122.0091 384266.619 60282.7061 23213.4649 28354.5668 17132.8483 17132.8483 8012.7818 41335.0601 15412.5282 12779.5109 92829.3155 32331.432 23463.1689 13727.8741 30419.1257 14834.326 70879.874 28865.505 29864.5457 13912.6926 18479.6443 18795.3557 14782.6931 23137.7884 87281263 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 39007.0556 482883.318 170697.0397 61019.128 36038.8689 5356.0215 11019.3952 31008.7584 10916.354 130884.8512 33555.9143 8785.5247 568947.8988 45688.7313 35399.5 15021.9477 11392.2504 11392.2504 17768.9015 21172.6587 11566.2258 10885.4568 16738.0489 15151.3139 5429.5886 9348.1498 15176.2096 17629.3933 34551.3485 20400.9421 25509.811 10465.9871 77795.5137 15237.4451 17411.1679 16110.6892 374815474 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 3715.8426 5431.4201 2355.1784 2830.9836 4663.8836 4209.1819 4529.6495 6494.1956 3651.5791 3651.5791 4378.7362 4028.5811 2246.9221 2450.6094 6268.7563 2441.5741 8672.6655 5702.4573 3161.0632 3083.8335 159173222 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4663.4871 85640.0559 5944.1353 4723.2465 10043.5016 2644.911 2644.911 4082.0785 10424.3988 4514.9411 4058.1852 4736.0552 6403.6162 3348.5443 14261.6168 6985.2552 3005.3918 9196.7216 3627.9116 3344.8797 5118.9914 149783343 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 231833.9452 900432.1672 71767.9883 10696.5635 3975.4595 3676.9834 5544.372 57679.5577 76298.453 6609.9066 21986.3919 6459.0188 9976.3376 9976.3376 2942.551 12643.3301 4956.0365 173635.0436 12064.8884 210199.0015 3015.1576 24680.432 6187.7853 4951.1456 91245.9664 77514.1741 84585.1318 6313.3923 4612.207 9505.184 8614.9187 153603.4212 121495614 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15204.3297 12411.3412 2956.1706 2644.4475 4531.2702 4454.8118 9515.1019 3573.3431 9183.1684 4652.4576 7848.9386 5651.1961 3382.671 4735.0043 6308.633 7765.1319 10941.3765 6269.4622 6547.5595 2741.5088 5248.6802 4433.4461 5793.6839 42627730 catb Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. BA-5-17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 215733.9125 36635.5849 225772.9015 106950.3918 157516.4006 40218.3936 81919.5564 360833.222 193485.6487 147207.0753 232687.5341 151991.8354 1463150.8743 292405.2364 407815.171 300840.8269 226186.6161 226186.6161 130463.0649 347908.4281 113392.5006 534663.7453 240838.8728 498631.9391 147395.8881 163888.5473 147035.6857 151565.2512 405875.4781 187004.6115 323622.8717 92420.7463 148870.2662 240098.6995 87567.0611 239831.4922 320122579 nrfa Nitrogen Dissimilatory N reduction NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 74109.5043 25257.2784 17052.3063 15380.4491 28654.1135 9247.6156 19858.144 23359.6121 379123.9061 22299.3875 32961.2373 25796.3081 837845.8798 60597.3053 33190.2881 14715.7771 13466.7787 13466.7787 20462.3643 38423.1626 30652.0166 28384.7701 46354.344 41866.7832 14436.6521 16150.1086 26901.7386 15075.8366 58538.3454 21448.654 46817.6568 12977.3091 43373.2309 77795.042 18247.4391 53870.9231 118587877 ben_bcla virulence NA NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 13845.5318 11642.417 3537.015 5537.036 9848.1986 11401.6241 73210.4007 4938.1258 10625.0153 4092.7531 2345.7459 2345.7459 7407.2458 8313.9748 7229.366 6526.5402 6603.7895 9502.7742 5504.8886 6469.8457 2479.8363 15779.5269 8592.5913 5515.2654 3782.2376 5135.6599 4928.6227 6200.7218 6669.0002 115383710 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 35666.0656 16828.5909 115167.3335 8776.36 20800.7275 5772.6893 94029.6245 85683.6825 101670.2446 33159.2494 50215.339 2042123.8135 41916.3732 42556.657 33076.4286 33076.4286 32199.6502 65909.6687 51522.3748 698331.0303 37163.492 17845.7229 28536.3015 34081.971 54692.0164 108806.0067 15787.6173 38940.0365 37036.459 41316.77 45018.8515 256392417 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 16758.431 16193.6604 10824.9254 29430.1028 9728.9807 45995.4088 31759.5792 8445.9594 11251.176 15839.2882 9986.8696 263851.774 32342.2863 45514.7584 21071.9923 9817.7806 9817.7806 9958.1925 24181.735 15247.9365 14166.1889 33527.7336 15252.0816 8166.9469 8824.904 20944.405 10602.1299 33180.923 20661.8764 28517.9314 12443.9422 11511.9316 11914.2344 16683.7326 25803.0332 383330947 glucoamylase Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 17556.7112 204440.9059 7598.4273 8592.577 2261.7916 3074.0199 77285.5348 5269.9241 5269.9241 4954.782 7990.4971 2443.1388 2128.5543 3647.8436 5221.138 247538722 fosa Virulence Antibiotic resistance Degradation Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 12916.5302 6719.348 11279.1318 13851.1942 7024.4938 7649.5259 8204.5944 6757.5067 10503.0921 14100.3254 6161.6064 276251.3541 21045.8464 14274.9316 10203.0107 6273.293 6273.293 9737.0156 22842.5406 14491.9084 13496.8229 13976.4035 28578.0208 7949.4583 6428.2274 15332.2207 7391.8431 24550.1168 17213.6943 16617.0297 6125.677 9881.1484 10582.8601 6136.7734 17313.4649 126720458 linb Organic Remediation Pesticides related compound NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 21396.357 8267.1613 77766.8133 3084.8832 2001.2564 73473.9161 6217.7478 4871.3157 3983.3796 3746.9573 2087.9348 2087.9348 4434.7428 14630.2876 9309.5909 16871.0736 4853.7037 3243.3187 4087.1212 7015.5453 19613.2007 17012.8985 7748.5572 8961.6819 4444.8077 5321.262 8580.7206 4806.6827 12354.7423 67530644 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 25688.3468 16308.6261 8368.9283 5449.5068 17636.0232 13131.7601 13682.8183 57956.9255 13342.8695 758283.0428 26275.7433 23176.4376 13872.3474 37919.7172 37919.7172 14135.3723 466171.58 11746.585 14678.854 10423.069 167851.4131 7403.3907 10879.425 58467.5256 29733.2296 39870.9507 16461.8131 15013.2922 9487.4197 33096.3638 11556.3007 12388.7608 14689.3827 271501785 trze Organic Remediation Herbicides related compound NA Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4633.6493 24110.7774 3866.3163 2939.8528 103984.3227 4013.062 12038.8541 12038.8541 10913.1476 4221.5393 6208.4412 8972.6049 10459.5639 2411.671 2889.3432 8719.5168 12293.1829 6430.2187 21664.3242 2270.5277 5027.7235 3177.5901 2709.0096 6904.3931 347732924 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio sp. A2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 6496.5608 421189.9107 10927.871 10282.3376 3880.1175 3290.3776 12123.9171 68112.4984 10740.5273 7808.2511 3551.0883 3186.8883 3186.8883 3326.7576 345871771 arylest Organic Remediation Aromatics Other aromatics Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 6640.4088 8482.0009 13548.4853 2417.2241 3346.27 7017.7244 8532.3461 3176.7038 77691.1151 6003.4961 4060.5723 4809.7868 9987.8751 6867.7505 251673.3674 10117.8514 4139.0749 2904.9409 2782.6846 7576.3785 3243.1876 17020.2829 7465.7001 7305.5097 2137.7659 4572.0744 7276.6458 9167.8246 8050.9375 497874 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5467.6544 4958.6765 77379085 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 17417.0104 46074.0109 54296.9348 23152.0482 8068.5647 8585.2505 15022.1369 13724.2022 27734.7944 11930.3495 229966.4101 10868.5468 10140.5896 15774.4951 16488.7828 16488.7828 56461.6554 29246.8188 13269.914 33134.9239 45182.5046 21413.7286 11686.1407 10117.3088 17766.6723 10326.8517 23231.4907 31392.5357 16936.1524 7015.7695 19831.1476 12601.7285 12887.214 19516.7584 255708130 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6512.1902 6051.9711 5906.6494 12332.0045 5454.2657 6397.465 3398.2408 6344.6688 6344.6688 12786.5618 4590.4242 6278.8222 8216.5887 9479.3663 40562.7663 6255.3668 14161.4451 2625.3559 11016.6162 3659.8303 209518151 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9718.3071 9799.1311 13011.6881 196879.8119 30407.262 4267.692 30169.3498 3421.0543 26956.1454 23346.5494 18316.3112 937899.4958 38585.2017 55781.7286 110385.8018 53764.0844 53764.0844 13400.7208 21534.7176 17261.4353 9482.3043 11917.1977 9121.3081 7022.6294 25713.8115 58111.1903 13814.7554 38012.6091 33348.8141 36672.0944 58704.593 15172.0502 18717.0302 6701.7236 16052.4651 332372381 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 15024.5256 144941.1141 27264.4145 5595.8274 3009.6095 16114.1331 4090.7789 29031.3231 70002.1305 4676.9428 6347.8056 9454.9889 5769.2642 5769.2642 5176.1979 7840.3587 6085.4435 5058.7358 46083.1867 4467.856 7004.0261 10222.1086 5339.4833 139270.2689 30862.3297 9968.4118 8097.563 6472.9883 7207.7833 2446.5173 67524141 RgaE Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 3909.2792 5693.0567 60015.5688 4058.1801 27248.4166 7439.2073 2150.1714 6891.4343 2259.3079 3282.2609 5146.64 7635.7889 2681.8181 3022.4176 372000036 merb Metal Homeostasis Mercury Detoxification Rhodococcus sp. Mel superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 44939.1992 142313.7615 21326.0173 33113.4812 75534.5381 581001.268 20775.3575 31140.8819 8132.8602 36915.6525 49347.162 49762.9383 869206.3473 77160.7884 62862.1509 89204.6229 35099.9737 35099.9737 49514.7257 59569.2573 57175.0437 21932.5436 38044.3338 129496.3272 15646.898 35145.0092 100906.9909 36430.7872 102550.2075 72972.1656 122176.3731 29742.8976 62629.8531 42516.8731 15129.8318 73565.0302 406822175 catechol_b Organic Remediation Aromatics Other aromatics Limnobacter sp. 2A6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6914.4724 4546.9689 6960.1313 11298.5846 5344.2656 5049.1717 24020.9094 10153.1097 276323.0191 5197.48 4477.8163 8801.8565 6237.7827 6237.7827 3658.4659 22176.4728 11431.4261 4859.3638 7985.5064 3977.3649 2549.6359 7288.4391 10971.1832 5036.1876 218296.7962 12505.155 12374.8682 5631.724 12094.3075 14068.8508 4924.1553 9160.5443 256592139 phytase Phosphorus Phytic acid hydrolysis NA Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5102.8698 22261.241 3138.8555 1942.9508 4869.1445 18251.9661 85935.2711 5259.6145 4966.3029 5558.3092 86970.6051 2959.8298 2425.3288 8686.0078 7181.2775 6136.1344 2836.5129 5105.9424 4590.8484 3029.9569 5929.8597 209960617 nosz Nitrogen Denitrification NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 17416.4794 195657.5321 6498.5994 8322.3436 9090.3676 10532.4895 7813.2727 3870.8259 3678.2521 5519.2793 8450.2473 110715.986 5630.0721 9383.5845 16326.9577 7526.893 7526.893 6312.3912 22632.3512 11039.3323 8166.7079 12965.8351 6180.9292 4492.7985 9481.4172 18521.9419 5214.7347 26819.2896 26069.5871 11437.831 4461.3644 7434.568 8024.7357 3671.4643 15751.5944 308209430 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 49586.4003 15005.8996 41960.5951 29496.4309 61850.515 216676.0325 53533.2123 29984.1268 32177.8928 23960.6908 35097.6379 23743.991 518486.8612 51394.8895 52814.4129 56412.301 45595.4427 45595.4427 12193.2138 55178.0265 28841.0138 32820.215 39809.4316 30727.1849 18834.7307 21089.1916 62535.0423 77954.1775 76392.2475 40853.3307 91792.2635 33607.5548 36310.8934 25283.4683 14622.329 56989.2827 257478318 poba Organic Remediation Aromatics Aromatic carboxylic acid Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 27872.317 10980.0093 11722.8319 11539.9811 6374.3093 10331.3943 9133.555 20914.6464 11417.3102 13260.7472 21948.4933 16285.9228 327224.9144 15644.5437 16340.9865 9406.1906 12050.2033 12050.2033 6752.7455 29164.3179 13446.5521 15143.5342 18410.2645 13952.4266 9331.365 15804.2923 19011.6215 14281.3827 16876.9859 14478.0895 35454.0265 30839.3004 23765.7719 14423.4708 9015.0569 46431.7643 407767377 amie Organic Remediation Aromatics Other aromatics Alcanivorax hongdengensis A-11-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 14593.1242 7158.2673 9148.9472 5465.9563 7382.5374 5625.4155 11413.0889 22234.7768 11875.0936 125965.469 11503.5278 15249.3809 15954.932 11116.7741 11116.7741 5028.4473 25613.6702 20997.4439 10823.5575 38778.4962 16293.0859 23203.3731 24590.2924 13627.6838 12994.0979 50553.4182 21424.2827 49228.1732 20174.3379 10551.6072 18648.5242 18529.4946 10804.32 307775292 dehh Organic Remediation Chlorinated solvents NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 7721.2992 16565.6718 32734.415 15342.0252 7118.8618 3185.9229 72851.6195 6075.8932 4464.7822 3289.4961 3289.4961 3051.2465 7212.7846 5996.7466 115645.1019 15253.9397 7761.6469 4099.756 10769.482 5073.96 11849.7602 8954.597 12474.7314 2092.4544 5031.2075 5419.1173 4814.1266 9361.6418 145220333 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 9643.6647 8536.0522 8880.0497 9629.9861 10370.5729 9216.1968 18084.9093 4373.103 7969.4168 10249.9363 3909.6905 1454130.8951 13808.4306 12348.967 7914.6882 7696.9767 7696.9767 9470.6849 13390.4955 8292.6201 6117.5961 157644.581 4748.2013 3839.8984 8581.1035 16330.8583 6696.1645 17701.3675 14571.214 25776.5171 7778.1945 8922.0171 6727.8976 8379.5269 13560.9029 346993862 ppx Phosphorus Polyphosphate degradation NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5489.7008 4672.5644 2819.7619 4959.8817 4252.5033 4200.8423 108664.5269 8227.3959 17843.4129 7225.2645 7225.2645 14232.4085 4608.3659 11700.426 5241.5467 6837.5436 2510.9396 4333.0138 6163.2605 3061.2605 14750.1388 10383.5115 8781.4113 2038.1781 5050.1642 7493.2294 2447.0189 197710592 adpb Organic Remediation Pesticides related compound NA Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 278589.2632 10141.7325 20156.5238 10878.1692 14622.8932 13719.821 71879.2328 8349.8794 21641.854 18077.8887 1329205.289 29322.4414 7196.6835 91617.277 22195.838 22195.838 24682.4407 16178.8022 13304.6361 49715.7511 85230.0626 7821.6185 7848.0245 14237.4767 26267.5543 11192.6056 24729.673 25429.1983 19792.396 6272.7037 15323.4699 12855.2153 7236.7107 9411.0767 344040938 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 140611.4448 38494.4491 29308.052 37963.9337 26799.4327 17081.3642 42736.918 23717.6743 45667.1996 141783.8769 102936.4399 15923925.8429 51752.817 69020.6254 78229.358 60462.6639 60462.6639 202694.6827 86752.1561 57914.3745 167091.3074 389704.2783 36438.2 427306.4402 133394.713 57841.0278 116373.8475 76373.992 218412.591 60759.5842 22764.7851 69200.0254 198125.0528 54738.5796 1347148.4545 297165558 arsc Metal Homeostasis Arsenic Detoxification Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 9199.6865 23264.0142 13251.483 3346.8446 5101.0493 3411.5646 4511.94 2412.9749 2870459.8211 5604.7055 20700.5394 17724.4402 4579.3087 4579.3087 8349.7077 3967.3077 7996.9618 4815.861 4784.9746 2900.889 3022.0636 13684.7457 3443.9087 10798.8624 8421.9371 9173.5683 3440.988 5237.7836 4571.8967 4127.1376 11299.436 295695614 bphF1 Organic Remediation Aromatics Polycyclic aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 71592.6777 18954.9653 69536.7819 9245.3474 63870.675 13849.1085 32696.2084 13101.9306 34307.5204 20156.7424 847176.2705 27973.3718 24456.0614 21628.5823 25590.981 25590.981 31908.7201 51984.8902 32478.26 51917.1254 48948.9334 42491.8976 31234.0016 41565.5338 23125.2298 18942.4266 66181.5919 35997.7065 57056.4081 22198.3771 34750.1699 39367.65 52789.751 28741.173 340788109 amie Organic Remediation Aromatics Other aromatics Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 177052.0729 65479.9243 16838.5949 16117.5018 19301.5299 29440.8634 37613.6381 80107.2265 46153.9163 25831.4895 312144.3529 21313.6446 35299.2606 29499.0245 17101.1082 17101.1082 19586.8141 39611.1155 31877.1909 38940.8395 107444.5898 49093.4893 17496.3911 27927.9943 39871.3076 40667.8023 82291.6272 36588.5641 40502.8159 21152.2428 29597.5909 35285.0296 44706.6486 296982.2798 297198814 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 5911.04335 3259.55455 3456.03905 8045.95305 3888.1812 8176.10165 11453.3837 137531.06915 7680.55395 8468.30605 49935.38915 3802.6784 3802.6784 5401.9309 16512.95105 6877.7522 10614.2425 9636.39015 8318.0279 4473.56195 7229.721 7101.3995 4952.5264 16703.50545 4626.03475 9857.91575 3828.83435 7898.3853 6487.2756 7426.2894 6229.7965 226303542 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 4388.4803 2446.9884 83032.8342 299538843 arsc Metal Homeostasis Arsenic Detoxification Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 23369.2961 3578674.8434 1047261.0279 3970.8143 7190.5156 3689.4158 2933.1117 3746.0049 15608.5701 152628.183 6284.9004 4436.6799 2814.1484 2814.1484 3829.6218 7535.7967 8073.0893 5728.5487 5956.0626 4244.9085 2881.744 3543.5621 7487.0412 7142.1211 9461.4142 5362.5146 7013.0201 4569.5074 12302.0724 4272.6347 2254.5483 475596.815 218988998 phenol_oxidase Carbon Cycling Carbon degradation Lignin Russula ochroleuca superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Russula; 26753.832 14951.5747 54140.7374 20671.1366 585274.3025 25794.2017 18073.2915 218599.1434 5960.7243 57717.7827 281244.0073 128953.9678 1029103.8284 117566.8188 67304.3027 87835.6443 110342.6004 110342.6004 330973.6691 654661.7997 27930.4271 89048.1207 114791.1371 54181.584 35924.481 42623.4086 193513.6554 54371.6638 187039.8331 134443.5387 115376.4745 46644.7928 71293.2072 158610.7688 40385.5055 23274.9216 390453110 terc Metal Homeostasis Tellurium Detoxification Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 9854.0482 150567.0257 23263.5349 15396.0418 10951.9736 1917.9234 2618.1935 3399.6331 95259.1378 4444.8262 4872.4302 15523.5213 5749.2463 5710.0768 4595.6821 4144.8451 2658.0384 5612.1909 3747.9286 14563.2191 5448.3343 3513.0613 3955.9726 4215.3782 2410.5723 4506.6997 379988667 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7033.2952 2544.0978 4595.9699 4964.8433 5581.9708 3288.4478 86008.1796 10107.6151 3723.5775 4795.8773 7906.3787 6346.2473 7601.3358 6072.3466 6113.2264 3057.9838 3164.3052 7037.3413 2644.244 13088.6214 7466.0331 3432.0912 4143.8211 5035.8076 14671.8459 4300.2593 14090317 dsra Sulfur sulfite reduction NA Desulfovibrio longus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5394.1525 49584.6114 1972.2723 2858.3888 2222.951 5079.5637 9080.7218 10125.4169 8096.0744 5811.1224 5230.1523 6770.1268 6770.1268 13780.747 10966.1542 7552.6727 4746.7096 5818.375 12853.392 18947.1678 21215.1912 8040.3123 10344.2148 3268.9615 11950.9971 9324.1868 5261.4082 16812.5968 117949596 phenol_oxidase Carbon Cycling Carbon degradation Lignin Streptomyces sp. RU06 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9882.2567 4198.9424 3497.7726 179937.8262 5272.7958 4372.5273 5000.8957 3526.453 6780.3853 6689.5683 6466.9627 6585.0732 3212.1622 10415.5671 2325.895 11332.7795 8472.9103 9093.5122 2394.548 3603.7948 4610.9513 3920.983 9505.3258 306517161 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22061.7229 16667.988 13635.7663 23530.3416 7850.4667 14107.0799 14647.136 9997.0255 17704.8485 25342.1611 22454.9676 455784.1575 42789.3478 34789.148 57482.1671 14500.7345 14500.7345 29095.7111 35724.7726 25168.866 10755.4168 18011.5891 23464.9535 201636.8406 68087.7722 703873.5834 13649.8617 44874.978 28320.8088 27596.0469 21387.2465 21125.5894 66906.9789 12813.226 54720.8549 146406395 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 96571.5924 18218.5854 326354.3031 284834.1941 32660.7612 13998.4844 184300.0746 106760.2213 56716.8306 72404.6159 91137.3778 141047.2201 1204776.9432 72440.4346 71426.6725 136937.7574 74492.3852 74492.3852 213252.2018 130171.062 56451.3113 89135.1739 160633.2921 99535.3023 48757.9585 52763.7823 107658.3013 66497.2122 153526.3762 139040.8987 111515.6625 119291.95 75663.5457 81606.5322 47630.2391 130151.1475 338812097 bphF1 Organic Remediation Aromatics Polycyclic aromatics Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 36048.8927 13710.1107 239947.939 316896.3749 41216.8364 5295.1682 16707.1408 15787.3772 30104.8821 94771.2388 57793.0468 29176.8359 388741.8817 117845.9006 71044.8241 26301.7384 61280.4976 61280.4976 16718.0182 78083.3257 67862.8588 76954.0248 49455.5111 404998.8681 14026.5878 15555.0086 42716.4573 32371.2403 76957.2498 36244.3162 44551.0935 45459.4564 30182.6471 23015.066 221480.2815 29627.6496 46519963 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6303.3204 6752.0521 39411.3258 3744.8563 10324.1474 97062.5882 3867.1565 3949.6511 3263.0949 3263.0949 6311.1281 8886.6923 6066.083 7054.5308 5467.0593 5632.7437 5907.1057 12537.0178 7577.7697 5944.4719 3441.3297 4574.2164 4846.7406 3137.9861 77165617 terc Metal Homeostasis Tellurium Detoxification Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 187571.9361 26915.2972 37360.4095 40919.131 45297.2117 13042.6304 33849.3009 161239.351 30956.971 62917.4972 70581.6047 50641.1237 956792.9507 59053.8362 56348.8396 69523.2706 58810.346 58810.346 312377.468 141959.363 72674.4755 85246.5909 147725.9042 258047.0114 36274.3097 35675.6655 68468.0571 37122.2496 420580.7617 30331.4312 76334.7318 31892.6251 60394.8117 53785.1688 121698.437 265496.3668 335865805 chitinase Carbon Cycling Carbon degradation Chitin Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 22424.6155 9550.342 10041.0522 12518.5797 60068.2944 13710.444 7300.1848 19472.4982 33945.6522 12676.5087 1960821.0033 32694.5411 20967.9937 12679.1562 8533.213 8533.213 41856.3443 31892.5372 15722.7362 25956.0668 28139.4025 19869.5477 13549.121 30057.1049 16090.197 26512.9138 41962.3769 9689.2594 23234.6273 11931.1744 13723.5896 14881.0956 8410.0774 20733.1348 345302357 ara Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 15209.4047 10141.6425 19748.0007 12059.2672 13609.228 7430.5075 11607.1253 5230.0822 12548.4483 15800.5455 6363.9881 293019.1157 11778.8917 11107.6573 9597.8119 5769.2123 5769.2123 9263.2251 18410.7183 11512.4981 12858.6748 18823.2139 14716.4324 8205.9036 6285.0902 16820.4667 6105.6255 24433.8783 13764.7984 18103.9346 7688.5138 8293.6928 9908.2416 12819.0495 19115.2049 78185919 arra Metal Homeostasis Arsenic Detoxification Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 193605.9885 19078.8477 42205.6866 68270.4875 178954.7807 59518.7294 232644.2611 123925.6892 48542.2983 67508.226 283705.0686 137483.1968 2203221.104 83057.1359 103131.6991 227856.0545 135468.4256 135468.4256 54457.73 119018.4346 66770.1224 42453.8116 138017.1155 83303.1859 58742.9364 39678.4845 110689.9479 75794.9675 241774.4389 81360.2248 115604.2714 42795.7932 132904.8787 61062.2344 50888.4086 113674.1182 91686232 cmtab Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 25093.1158 22308.1783 17951.6533 12314.9357 7157.8451 30706.312 16808.8919 37685.9686 196860.0522 18220.5608 43601.5759 7742366.8887 15482.3356 22030.308 22942.1695 23566.2051 23566.2051 22440.2208 26471.6632 13057.5111 1431799.7689 25734.8281 14854.1153 10855.0189 16822.0884 28734.3433 37030.0948 76256.0509 67325.5197 40760.7147 49659.1204 32351.4337 184808.3569 15235.6225 15951.1699 332182272 pme Carbon Cycling Carbon degradation Pectin Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 27579.3723 18381.9661 15749.8154 18622.1688 6226.3661 14770.8866 19996.0003 10725.3398 20891.1053 60018.3132 17466.9052 660519.9989 24029.4819 29006.0395 19030.5843 42296.4728 42296.4728 29979.214 41749.5423 27978.2363 25224.5209 42084.1397 38321.7428 15420.3379 32370.8543 35041.1763 26233.066 100837.7046 28081.1242 33060.9273 12914.8768 32177.2988 31270.1791 14836.7954 33020.5414 167596188 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10099.2478 7077.3078 11241.6958 12050.9321 13149.6608 11049.042 12933.345 9264.2835 16465.1617 6684.3169 191425.8246 9807.1736 9637.5794 8241.4964 7379.8637 7379.8637 7037.9121 17643.5736 11494.767 11345.9885 15154.2935 14520.8821 5717.4709 6839.1555 16025.4466 7871.6043 7060.5641 8491.0037 18046.063 8885.1132 7853.2574 11597.7303 5139.1407 12462.014 226720071 catechol_b Organic Remediation Aromatics Other aromatics Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 146924.1653 8517.814 19358.6915 7848.6914 5103.9158 68491.4015 13244.6358 15945.1334 20014.445 12830.405 202200.9673 9376.5614 18104.1241 38591.3322 11491.6346 11491.6346 20994.9394 32024.4729 20435.1001 13520.2813 122381.6562 8836.2716 15260.7718 13784.6105 23363.1436 26162.0278 27275.2902 15937.4667 18826.1971 38810.2198 16162.2877 19075.6929 15466.1801 21376.6175 151362421 cellobiase Carbon Cycling Carbon degradation Cellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 29926.2856 8356.2331 26855.8164 44183.3465 2984.0909 7204.3217 5695.9469 20013.4779 11493.5045 10545.3616 238687.3997 6807.4095 9362.6301 53191.9134 11976.8612 11976.8612 6507.9332 94993.6457 13246.5749 5276.1552 10328.0074 4365.9825 12073.5034 75587.7103 24199.1185 93938.4607 41038.099 21620.2782 16900.0817 5301.9734 24132.7771 67792.9031 9331.8592 6561.2014 5263173 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Haloarcula japonica superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 6314.8787 6680.9803 11112.3506 5815.0684 3655.3325 3098.7891 5164.129 5627.3211 15482.1213 102823.4166 6606.7789 5820.5415 4583.018 5434.0975 5434.0975 4617.2354 11365.9881 5072.1927 12762.2683 4428.7197 6711.6325 3235.1752 3476.2195 10363.5878 2876.7025 12740.3183 8022.5108 4682.457 4080.5228 4183.2453 3566.9226 7848.8031 356661103 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9526.9054 9187.7653 12282.1657 10217.067 153785.9942 2970.48 5332.9056 11853.5624 10254.4671 175964.8944 7348.4374 12747.131 41445.4898 13176.0339 13176.0339 13572.73 18461.4137 9025.9648 9312.309 25869.7601 15603.9718 5980.9037 9966.5078 8427.3733 9944.9696 24703.9366 10847.7234 30219.751 3987.5682 19937.4487 12113.5675 5449.267 8246.2457 358636026 PRI Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 4850.0574 2012019.7674 11594.2939 34700.2737 20337.4906 10373.903 5126.2778 2014.1228 41841.6919 7328.2195 3984.1337 128627.7315 8455.9496 19119.0446 12986.5877 7205.2468 7205.2468 101285.2865 59534.1536 17441.934 7204.3388 10299.389 10160.4765 16520.0757 11058.1622 11761.1538 8491.4631 25115.1343 15674.8841 14766.5041 16003.6707 11589.1656 10845.0974 9403.8865 7303.2053 167655801 amyA Carbon Cycling Carbon degradation Starch Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 5811.0977 3101.3727 4258.6024 2207.7203 3835.0916 10097.0575 2900.1805 114579.4543 6451.7086 2442.9764 2442.9764 12626.1328 15751.7957 5900.125 7654.0737 7057.2194 20035.5766 3290.7349 11903.2995 7624.0912 5724.4249 12189.2367 11224.3158 7394.9658 3082.7303 3245.257 5596.765 3465.1195 10230.1247 256387104 adpb Organic Remediation Pesticides related compound NA Arthrobacter sp. scl-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8945.0232 17748.9141 14745.7569 9428.7181 36475.7125 12601.0465 5243.8384 11583.9907 25127.0099 10003.9199 201846.0448 12420.5266 10808.1798 12284.0702 9452.3859 9452.3859 5873.9818 17773.5081 6633.4141 8844.0034 12310.2831 11889.2905 7861.4628 7003.2838 12350.8439 14967.3674 24458.4345 25871.642 44782.2936 4543.5594 12748.0455 14080.6037 9197.8855 8608.1594 302550562 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7695.3124 5374.4005 5579.3017 4413.9519 8834.7161 7508.4212 5617.9438 5372.8527 10346.0397 7631.5572 6477.8763 3988.5203 2948.7936 6464.2704 118571830 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 28388.3205 10466.7095 14337.1495 10161.5308 8460.4147 7016.6768 115542.0675 22833.9653 19768.9729 23808.0955 321476.5882 19405.5934 28308.1905 18748.1204 32651.9648 32651.9648 13568.1546 26789.8604 21326.2288 20222.3911 158063.2283 26509.8763 18741.2022 12597.0665 19801.7675 21426.3412 53438.9452 17513.018 37656.1699 107329.0702 19181.8802 20360.4693 33710.0685 24197.7303 118618440 linb Organic Remediation Pesticides related compound NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9148.4178 17723.0804 11102.554 61204.0873 4901.4059 4730.8296 8299.9872 8833.0523 8833.0523 3400.5281 7482.2069 4050.2244 4337.6649 8614.5104 10037.222 7869.729 2974.6501 3460.598 3397.8025 302561604 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 77666.986 54682.2824 17588.0419 16700.2492 12643.4969 13662.1707 23804.4905 36155.6288 30438.0827 29316.1102 399578.7567 26518.1923 27113.1963 21829.31 72197.9589 72197.9589 14200.7495 39087.5099 19478.7218 66227.5808 48602.7133 24609.4855 68182.7393 19899.1303 49669.0474 30685.5349 68665.0591 49482.6551 37530.273 18638.3851 25769.5601 32527.075 32282.4203 37275.7223 313587733 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9995.3773 10882.2446 6085.1419 42548.2372 16424.4318 2401.59 5012.0101 2024.6063 11360.6555 12428.1251 8236.4378 147640.2806 7824.0574 15753.3251 10888.8939 6487.2225 6487.2225 5221.1093 17182.4822 9763.8574 8435.5733 16182.034 24078.8504 4363.4058 6713.0342 11545.4115 8434.8875 24441.99 17435.727 15022.9562 5943.893 9871.6014 11581.6691 4359.7539 12155.0343 133913228 narg Nitrogen Denitrification NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 5495.4772 33372.8403 14415.3774 6900.6839 5616.6159 4169.6687 4828.9847 5068.4333 159681.1722 12584.9941 5979.6884 8971.4587 13508.8042 13508.8042 4972.1102 9445.0169 7592.8057 4279.5249 19418.7738 12412.0833 3298.6739 5284.5218 7997.3719 3970.7717 37047.2898 9437.2917 11204.0781 5062.4336 5438.909 5362.5034 5944.8274 225559860 amyA Carbon Cycling Carbon degradation Starch Ajellomyces capsulatus G186AR superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 5084.7432 6724.7639 5600.7961 3614.3972 2811.5176 5899.6766 5581.3449 2348.4267 111283.3667 5763.6485 3961.6044 4054.7362 9733.315 8816.7308 5186.7367 6732.4211 7905.7213 2816.3462 3324.3141 9677.901 3620.6441 14583.3646 5304.1527 9535.4882 4481.2267 4772.461 5286.5061 3817.4098 11241.8345 258546008 norb Nitrogen Denitrification NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 16715.0422 3266.2495 3042.3094 3809.7116 4918.6148 32720.6865 3420.3512 7929.051 6717.523 10481.743 10481.743 9536.6549 22341.7228 10090.7932 46743.3592 7604.5996 4467.3489 8620.5591 14291.3369 10564.234 8452.1353 163582.5571 15251.5462 12527.3981 1932.6746 11401.6482 6768.8985 5182.6959 11219.8802 300390414 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 213221.4 20162.7231 202324.1322 10872.0949 40998.26 22437.1118 29473.4114 12510.0795 73210.0535 9761.3086 12369.8179 33847.6333 272994.0937 14084.0284 11649.6308 22491.732 18484.4485 18484.4485 21435.9108 13607.5719 9298.283 7425.5666 13999.1575 27285.9272 58067.9952 14859.4754 21674.2704 11810.5406 55645.0119 21315.8336 30024.2956 9652.9104 10902.7876 11342.8061 8167.2803 10958.5872 146407249 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13763.22915 18145.9759 7516.10865 11397.70895 7701.0842 15285.3712 26875.9569 22285.8268 13684.85 57920.86645 22032.7794 318906.5782 18082.68145 61255.03715 13541.77555 50054.72845 50054.72845 11154.819 24061.17485 12314.9544 15784.1136 126051.2631 15039.4237 9930.7028 41627.7025 30645.44305 13370.7684 31055.22775 30713.56225 32023.5782 18204.4611 34356.95295 21685.9555 291568.312 26995.1902 291369137 narg Nitrogen Denitrification NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 369511.7674 19719.4169 267230.3891 426829.9668 235387.2932 68877.1584 170659.5135 167295.4713 86164.4389 80222.0921 334339.221 104673.5073 1653582.7536 99424.3217 176141.4848 244241.8528 135111.9411 135111.9411 75002.0672 186015.1174 105601.4757 288080.4712 141436.5346 115822.7481 112239.2629 130352.3069 179747.4711 120638.0168 348518.1634 235358.7758 190231.5668 120201.3807 111724.188 94098.4755 61357.6018 176521.2691 304310494 tehb Metal Homeostasis Tellurium Detoxification gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 23965.8157 29297.0604 6363.8085 11563.9183 29660.1942 14354.6692 14724.0064 69062.1273 34455.0856 31879.594 250302.5557 21713.7638 14687.7422 16901.0373 40487.9931 40487.9931 7742.5978 24784.0491 11914.9814 16412.2946 35461.6734 12034.0243 11913.7526 19068.2531 13539.5824 68307.892 67948.9106 23549.7936 21528.4231 13439.6417 15609.4039 21094.8916 11810.8159 20900.8681 124271095 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 17121.2608 8722.3748 15576.7226 12397.8376 10023.0474 5864.2499 5672.9172 13861.8085 17902.7864 7410.0489 315617.9782 22971.8144 17831.2006 6281.8321 6929.113 6929.113 11632.9217 20680.84 17065.3071 16775.5984 26587.6418 19707.2049 6520.0333 10457.0513 22654.9813 7277.5612 33673.0469 15577.7515 20521.6764 7487.5634 11379.3394 12802.603 9769.3466 28848.0776 82801443 alkb Organic Remediation Other Hydrocarbons NA bacterium alkW92 superkingdom:Bacteria; 25605.4542 8006.3737 8511.7229 3261.8977 12488.5226 10462.4531 5205.3647 9738.2513 7659.9302 118701.9765 9988.3988 11263.951 8120.3291 8682.5435 8682.5435 8083.7354 16958.6697 9129.7501 5032.7505 9187.4774 13689.1907 4668.5453 13644.2211 17242.0019 17657.1886 13760.0249 15381.6352 16497.5425 5617.5428 5817.9468 7449.0243 35559.2912 10654.325 112821555 arsc Metal Homeostasis Arsenic Detoxification Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8991.6502 14781.6282 7270.2023 4905.0181 3001.5363 6269.1655 6303.7578 5360.9602 113731.5925 7644.7334 4297.9622 15856.7692 3969.5635 3969.5635 2747.5109 8786.3547 5299.2541 5089.2616 6299.1502 6162.9202 5505.1492 6100.1003 3403.7435 11010.4488 4366.1296 12545.7087 3073.4403 6221.1005 9768.6423 2743.9241 10282.2867 326383814 arsc Metal Homeostasis Arsenic Detoxification Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 7686.6188 5975.7133 5324.5792 6148.6603 15181.429 4314.6606 3434.482 7365.8443 7250.4985 4392.1972 178330.1885 21590.5291 8181.4447 13961.8194 7235.3181 7235.3181 8897.9517 22887.7846 9463.3598 9816.0212 64655.8923 11891.1114 3887.5192 9101.0569 7983.6447 4375.8444 16086.311 5091.4067 11427.5508 4883.7297 7173.742 9951.3879 13441.4582 13789.613 210074981 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 4701.0954 262969.9106 4903.1472 4036.5342 5260.9696 3919.5636 69364.5371 3936.4436 3056.8621 3056.8621 7120.6211 2634.4845 2890.633 22496.3466 9323.9195 2769.4722 33581.1348 5207.8161 146280632 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7376.6953 6459.9143 2219.4456 4268.3568 4393.6144 3006.3171 6688.4884 2559.1026 2559.1026 32342.0116 8042.299 8271.6276 2997.5202 9831.106 2886.2948 6346.44 5990.8476 3240.4894 3728.5637 3883.3269 126780.5687 189438317 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 25274.1281 13260.7082 29873.8683 20720.6265 4325.6464 25890.1623 15613.8273 17180.2475 16044.6938 19000.9721 10919.7801 437959.7312 69943.06 23971.4737 15586.4633 10235.8903 10235.8903 12210.7834 28012.537 21480.8231 23373.4183 25852.3673 63980.3444 23356.3129 8574.5449 23739.0923 10349.0929 40537.1281 23449.3456 24925.9453 10089.918 14708.4365 11617.8602 11488.5349 31471.167 189206546 cysJ Sulfur Reduction NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 13472.7431 7502.0104 12730.0295 11010.1032 7963.3371 5216.6104 4365.2557 8349.1121 10459.7043 4022.6279 206093.3328 7832.6268 8933.3236 5296.0517 4192.3955 4192.3955 8646.6762 29124.9325 15819.8479 14704.6881 20917.0884 7606.4125 7245.2103 17378.7944 5853.2653 30959.0705 9226.5416 21728.993 7620.4088 11231.0439 7440.57795 13950.1027 16089.6691 13422062 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 20767.677 5260.8141 20190.3149 6536.3734 15612.4313 10503.9074 26075.9135 8780.0068 20513.7652 20299.7888 26458.9097 1161453.2032 21581.0964 56543.7049 17339.1541 19875.5983 19875.5983 11619.2735 81264.4151 29242.4228 125805.1308 32015.2549 17193.7276 8580.9706 10826.7403 19589.6234 21987.5823 23520.2506 19616.2238 27296.1444 18526.876 16744.9702 33545.9025 17045.1616 22187.3058 187929295 TIM Carbon Cycling Carbon fixation Calvin cycle Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9818.5106 63269.7522 8894.7777 10556.2163 8497.8478 4666.4298 17191.3019 18396.2953 12578.7952 257694.3879 18222.898 15976.3515 9254.1159 9842.5013 9842.5013 10132.0628 16955.3125 16284.0651 14933.474 22830.5385 14688.4319 6481.1696 10061.3203 17347.7951 7316.1199 36137.9941 20902.3408 22256.199 11862.1622 15788.6306 11759.1626 6989.0011 18108.5419 302458936 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 102675.3097 99549.048 23576.509 34630.9629 6095.7387 21897.1463 65019.5953 25155.8139 26221.1 30823.0821 52817.2646 1737613.1938 24045.8564 29623.0392 62799.3965 21326.0471 21326.0471 16573.9131 57456.1121 31365.2848 51918.7444 29912.6651 44300.3358 32500.2643 23875.3309 41157.6983 30866.8063 66245.953 28341.0113 56869.2192 60998.0691 35053.3238 42503.128 23643.5447 46030.5648 157060169 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 34190.5693 28766.9189 22851.3627 39757.4892 9496.4981 185619.7849 33307.486 26737.5232 20294.1841 28714.0897 41671.906 851709.8318 30911.8092 48781.3652 25242.5401 43624.651 43624.651 24782.223 49767.8047 34262.003 35587.9283 37854.3239 70920.9 23393.6528 24668.7624 29889.6443 33348.2002 71339.7673 48309.8049 88518.3484 25890.7913 77012.481 41628.2824 57944.4111 40658.1114 371550701 urec Nitrogen Ammonification NA Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 14710.476 15302.2384 17873.5535 5811.4421 18276.7422 8446.0726 43850.2424 10242.1049 15672.3823 10231.9806 356170.749 17549.5358 15206.1957 7984.2976 5489.9177 5489.9177 9316.9021 27494.4402 12335.6178 56800.0074 25684.1389 85888.4908 7249.6331 8365.4924 14296.4479 8950.5102 84546.8825 5814.3903 23395.4878 9615.8115 28074.727 10633.8858 8134.6573 19092.465 297147320 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 21128.0616 2192.0684 39511.9768 3143.6658 6704.5776 53948.1441 3326.9394 3326.9394 9183.9359 8997.7906 8367.6545 34022.898 4759.6501 5940.5193 1879.2847 3442.6227 8930.1268 70930931 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9118.21 35031.7607 5695.9144 2826.6825 6518.369 33612.777 5888.5191 126443.4166 16607.3945 12287.2676 7014.0256 4273.9303 4273.9303 7224.7676 7976.8447 4490.7293 7278.4392 10512.4949 8945.2915 2409.0298 4978.863 6384.7618 10522.3775 16812.2308 7313.2491 11103.1191 26615.0796 5067.6771 9044.0088 4143.7465 9164.4187 116333349 ppx Phosphorus Polyphosphate degradation NA Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 6740.4296 16914.7868 13224.1873 3840.1937 4625.5881 16329.8297 4917.3403 110449.3895 5811.1365 4573.0668 2474.5001 2474.5001 3576.3857 6522.8625 4293.0325 6372.5699 4880.5031 9235.4154 2715.1855 3499.2312 5965.6252 13912.7896 14013.6228 5232.6121 5870.9972 2440.874 4749.7405 4405.4094 3430.714 6892.6111 13249563 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11807.9634 9138.3537 23419.0941 4039.8961 35460.6151 3515.1714 3995.2428 4976.9921 3431.1917 8474.9949 3746.6436 3746.6436 10229.468 35859.9838 6051.249 7008.1956 3733.6434 4773.6414 6233.7002 10185.0204 24390.1394 12464.5644 6385.3427 4507.9407 3343.1791 4085.443 260419698 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 87255.8086 15576.541 166685.483 50961.8723 343974.1049 135134.2565 29431.8552 201360.2343 33552.9935 72304.6467 88896.4632 101889.1687 987780.5664 87248.3043 251805.903 337153.7795 103155.1608 103155.1608 43543.4791 154071.1594 104953.6263 66247.5278 95190.3337 74203.0883 65362.0886 155241.3179 91309.6362 81821.1615 247759.2333 91416.8819 188814.0854 57641.3564 202714.5293 101645.8331 72163.6479 67945.5871 332336419 arsc Metal Homeostasis Arsenic Detoxification Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 33427.6379 21215.6962 122660.9283 104862.0905 14432.1803 5997.4811 15465.0898 15802.4645 7989.4008 14494.6165 22582.5583 15753.448 342309.9614 16004.9496 15251.9884 11565.3308 11144.2328 11144.2328 13268.283 29373.7756 16296.8363 24046.1439 21076.8466 32764.362 9382.3152 20025.3392 20291.7675 29544.0427 35951.074 17099.3195 25782.2319 13362.2215 15977.7493 19930.8461 10382.8919 21865.5272 169612405 tfda Organic Remediation Aromatics Chlorinated aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 13390.4401 5168.9219 127409.3066 3175.7598 3175.7598 5613.2921 7351.5587 4042.1842 6420.2553 3318.4759 35166.017 345864430 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 7379.2908 6771.5568 2158.083 4261.7115 2715.2965 5039.1881 6644.1876 10288.8275 133264.6509 7127.5623 6341.2353 3948.4974 3474.7555 3474.7555 7708.6015 11895.1987 8874.1271 5268.1233 7925.4571 11517.8032 2977.6232 4099.97 16595.3107 2745.592 13635.4898 11909.6809 11117.972 3365.7523 4210.7942 7688.753 4158.1841 7480.6768 396926160 badh Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 75347.1574 9738.2759 90711.5896 26497.9341 8626.2472 38402.3194 7872.3353 21713.6036 21753.7866 30285.4497 399345.7479 52715.071 185675.5532 134712.793 21478.9539 21478.9539 32717.3847 39756.6895 75968.298 160890.2683 71447.0171 28131.5738 17819.0273 38281.6071 35156.0068 26986.7398 55202.9053 37187.6418 100209.5667 20632.6462 28138.0959 31195.618 34235.5418 34244.6362 335339875 ara Carbon Cycling Carbon degradation Hemicellulose Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 13142.0775 3464.9319 32503.2107 5926.1758 2692.4916 17403.8059 6667.6257 6667.6257 19282.5777 5607.7992 17302.5962 5014.1513 4766.7387 11087.8604 9507.2361 13013.727 3016.0222 5365.5691 4029.9109 3603.9868 6501.3272 322395742 arsc Metal Homeostasis Arsenic Detoxification Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 177988.3445 50429.8843 29487.6494 43041.6465 37347.4855 29583.5679 43936.4566 56046.1858 47285.056 39693.6376 60296.9872 73565.7644 781222.7997 59336.6244 104035.3205 106223.4624 60346.3105 60346.3105 51629.48 79714.5019 70757.23 751180.9301 135782.9581 48161.5828 37490.9285 39627.1864 68192.5039 45703.9794 164145.6409 95608.487 168975.0196 45070.1097 51743.6319 69703.7783 97341.1293 70433.1084 213013149 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10063.521 3551981.577 1016535.394 4580.1155 259364.4381 115390791 pcpe Organic Remediation Herbicides related compound NA Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 163161.1645 26730.0289 31487.0193 128281.1287 26210.4059 21034.6683 30374.3617 19246.5426 110685.8079 41262.5997 34259.3078 1703444.6938 837946.1959 30319.7724 38773.3611 35805.5252 35805.5252 33097.8697 38048.4703 25884.1119 27485.1392 32169.5035 51217.6611 16242.1094 17071.8021 115591.6059 14777.2565 61126.0862 41579.5844 43996.7005 20646.9991 28651.6926 24795.6891 16120.5938 104263.1168 356478533 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 5168.2188 5220.1421 6688.7617 3619.5197 3736.904 5513.945 4047.3992 124222.2347 5577.0056 7676.1721 7676.1721 6904.712 124936.7201 6079.9703 6025.4021 5386.4002 4358.9468 3507.3131 11414.7591 3551.195 13991.0421 5598.82 8468.8558 3044.3107 5705.0282 7750.0198 7163.3513 7734.7028 329119753 tehb Metal Homeostasis Tellurium Detoxification Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 265364.7116 12077.7146 69726.8497 458790.3797 202374.4698 126760.7869 99635.3446 184752.0664 81720.0297 426729.7808 318976.3233 132005.5256 1462042.5697 471935.6349 336517.5533 191646.3644 201226.2487 201226.2487 220508.0894 225424.796 241968.8208 186531.9998 322260.8616 818883.9424 100849.1002 125775.3268 113423.4627 107321.1051 1025708.2692 734692.1733 353475.4921 44095.6097 242749.4627 190618.2686 101816.4365 1069543.7237 149919376 arsc Metal Homeostasis Arsenic Detoxification Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 378556.4898 28529.2693 57301.2565 60417.7334 63517.4295 24796.3207 46495.3576 74458.9114 83436.5968 94495.3663 61773.4652 32676.5151 1197700.1408 86153.009 96490.3203 65650.0889 58386.7924 58386.7924 66087.3372 80738.7763 49172.7319 93416.5348 710322.992 98886.2938 51537.3937 40067.4769 66124.9846 39607.1212 102256.8252 140330.7137 64544.779 27630.7867 48209.0729 53842.398 30702.6694 90623.0587 297559740 chitinase Carbon Cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 12606.4705 17472.5644 17372.5551 6776.293 8569.5465 15488.089 7236.6748 19815.4614 10298.4923 136552.8774 27261.8882 39796.0534 20672.2904 5765.8084 5765.8084 5928.9068 21590.5397 8901.5248 7429.9645 9698.4439 9917.7946 7249.6713 5713.1545 10736.4646 24435.4493 21588.1634 17193.8319 16976.9111 16660.791 7864.1819 13461.1723 6877.4677 311225786 cutinase Carbon Cycling Carbon degradation Cutin Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 18901.5262 172358.8752 44901.635 17626.4539 14701.9576 10193.8716 15982.6717 8750.217 4220.2404 10421.3684 12802.4239 7733.4331 231218.9732 77091.9304 23452.2999 11026.8852 13592.9006 13592.9006 9774.8752 18388.4107 11310.0601 13423.0533 24175.5247 13640.9492 19363.899 9528.5178 17971.9492 9934.6657 27364.5898 12571.8771 29505.7986 143062.2259 47073.4177 9993.0418 10038.7108 44179.7233 218533528 cmua Organic Remediation Chlorinated solvents NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 4523.497 3557.9013 3921.2607 6994.4313 2533.7504 2533.7504 3582.2037 3113.3347 3834.1914 1887.9336 2832.2171 3183.6393 2748.7146 116620453 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8278.2401 20199.8778 9875.087 8499.2344 4610.5433 11385.121 7568.2537 6747.8805 9516.1624 7905.887 211301.3536 8995.5146 8882.8409 16122.4242 6886.8135 6886.8135 23189.4191 20511.2881 6347.7684 6743.4093 7510.4286 6923.9078 10223.7643 16346.2792 11892.8547 17078.3584 10733.148 8494.1586 3841.5866 13189.4106 9038.8246 6322.6278 5851.166 125629425 ppk Phosphorus Polyphosphate synthesis NA Pyropia yezoensis superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Pyropia; 16502.3528 12893.72 303769.8201 1334124.8745 412246.0134 31864.7287 198935.4928 10713.1704 34423.7446 111054.4083 26384.7337 538424.1674 61253.7912 83248.1085 69432.7839 35237.1704 35237.1704 53300.9281 119814.0716 134417.4252 17334.86 34580.0665 17515.9938 9181.5403 87199.6248 247733.1191 43020.8993 262712.6013 138813.7154 243074.2679 59769.4554 62089.3506 137543.6975 26296.2492 20582.714 171997218 limeh Carbon Cycling Carbon degradation Terpenes Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 57742.3773 18943.5757 10282.8604 22993.4897 368744.4995 9345.7912 49408.9344 26364.3667 65629.1264 31473.8177 72091.9624 58643.005 722996.0018 70066.084 32530.9988 23999.5056 236645.2493 236645.2493 23700.0356 69611.0932 28954.523 38064.2897 55099.7042 39187.824 15603.3457 28842.3527 66259.1252 56149.6251 82624.9906 39642.775 52314.0956 27323.6507 43198.702 64243.8143 21177.58 34762.34 27803361 lipase_fungi Carbon Cycling Carbon degradation Lipids Candida deformans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida; 7042.7033 8719.4632 2357.1394 5991.2395 9700.1394 5562.642 6944.9319 5382.3108 90862.0759 6609.204 17782.4462 10377.0734 2636.7626 2636.7626 9701.3788 17514.9845 9596.4008 33637.0321 8462.4815 8084.0485 17510.836 10246.4783 9374.9494 5299.1359 22431.61 5803.508 11338.3836 3772.0707 5805.5755 7375.7881 4320.638 6597.9173 3115395 pcpb Organic Remediation Herbicides related compound NA Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5257.5723 18261.0793 9175.5322 5706.015 2970.9221 3978.9038 4065.5756 55387.7513 3557.0388 5694.1078 8248.6918 3307.2803 3307.2803 8846.0307 4778.4555 3610.0848 7213.6278 8303.942 6114.155 4784.7098 4564.694 6462.152 1659.2967 102340.8407 3690.128 13063.9819 119955268 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 30598.6398 2737950.6335 4642.1632 55271.322 13878.2671 3680.7594 10191.6622 3481.3482 119945.5029 4802.2694 4649.1805 6254.8776 6575.2756 6575.2756 25707.9664 85341.7005 7521.3423 4210.5731 2298.5937 3547.1192 11485.2648 7025.048 34862.4234 14565.0422 16283.4451 12820.836 5209.1606 10609.792 3370.4964 336009474 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 7060.875 40153.4786 5119.6207 12006.2748 6305.8987 2895.0739 5089.0102 4189.9062 7951.881 77571.881 13609.2808 6738.7857 6665.0137 3300.483 3300.483 2802.7671 11410.865 5281.373 12209.4498 3104.5334 4066.883 12373.4975 3122.0753 16891.1095 4991.2262 33109.8881 2480.352 7104.9075 6399.7678 6855.1992 229785484 pula Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 29048.0114 7202.4728 7005.2296 10485.762 4363.2524 25646.8304 18262.633 9834.5112 12025.3103 15077.1647 6619.7929 231886.4218 12677.8805 16191.9671 11991.4911 8902.3786 8902.3786 7569.1354 27616.6658 427447.047 14591.2121 17937.0015 28338.0522 6923.1065 9882.5545 18901.3237 8986.5852 63954.0945 907591.7336 20818.4811 10926.3312 10592.6746 10708.9785 8777.2 15819.1029 373550420 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 13065.3114 8548.9125 16697.2422 16881.9018 16466.2772 19293.2344 8717.1327 28638.1788 48725.4165 26287.0558 15228.2739 1110978.0186 131858.101 27049.1871 22522.1962 11633.1148 11633.1148 10017.3348 27537.7331 13908.7322 14680.6713 20529.7468 13656.8332 8256.3542 11721.0949 23999.8339 20465.401 40177.5478 20482.0743 36926.1031 8974.4509 15278.0371 13212.7036 7405.6932 41102.5069 134053815 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 17310.6776 4877.7684 7126.5475 9385.7568 2788.9779 88913.9147 4646.6608 2328.7597 2328.7597 3883.8215 7536.735 7253.8952 22693.2182 5635.4752 8096.5804 7211.9238 7575.5851 2435.2237 4317.1454 3971.5399 4942.3325 7275.0715 365899654 linb Organic Remediation Pesticides related compound NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 21154.308 150285.0299 19695.6598 11865.7844 5452.038 16103.8215 15369.1555 7987.2527 21963.3295 41766.4458 53788.8085 7751767.796 21200.0063 19890.3579 16852.0042 30050.3323 30050.3323 9507.8636 23132.2216 16955.9605 15865.684 15328.0242 16995.4953 11797.0132 8141.7466 71118.4543 9100.7612 37655.2935 21957.1963 23093.9106 13065.1018 12386.958 13782.7841 11442.2969 25919.3715 359732604 ppx Phosphorus Polyphosphate degradation NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 89544.4153 16142.7403 37739.1948 213337.8948 10057.4489 31630.4513 30177.4322 93162.5021 35915.7863 48188.0831 106063.5347 380485.1203 21244.2914 30005.2822 169512.5136 81276.2255 81276.2255 53897.2511 68639.4974 32723.9776 192695.8877 124787.9424 51830.9765 26280.8246 124013.8487 33916.693 38658.572 156690.9974 57868.0146 52088.5555 20488.05 147848.6841 118554.8638 45017.8263 179314.6396 83316848 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 42306.2313 9907.2064 60814.0318 103561.9694 59333.5139 11588.4036 35251.4055 99658.3949 27489.2784 41823.4993 54454.1869 60230.0517 950561.4613 51986.8862 50188.8509 101374.463 42187.4108 42187.4108 29073.8135 65791.9531 48750.1279 134977.6041 72696.4878 71518.6492 34954.4257 15493.1037 45489.1202 27108.9329 140197.3062 44938.5115 58202.98 36476.2746 47354.2109 45809.0536 31168.347 55482.6846 339487191 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10255.9174 11048.2453 5596.805 10089.8975 5722.9618 10436.353 3263.8948 5889.0664 4952.5312 118808.6695 6154.3302 13083.6359 15194.5498 5974.9415 5974.9415 22978.9111 4367.6465 4628.4972 22684.731 10662.0474 17899.086 2925.4764 12776.4731 5830.4861 8983.48 14468.4596 7632.7017 5227.1043 5683.1725 8042.3038 6412.75 9925.9554 291151000 cysJ Sulfur Reduction NA Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 6084.2032 8088.1995 4424.5193 8211.6595 5250.2424 4712.5741 279532.3103 5355.7569 7946.8986 3341.3685 65707.0267 15852.2152 5969.1275 3362.1306 3362.1306 4800.5042 10534.8457 9809.3789 6733.9409 9707.692 3041.6492 12821.3747 7610.2079 18680.8774 18552.4471 4259.668 9806.3937 3059.6315 13007.6872 5456.2488 3195.4541 8738.8054 192282915 ben_bcla virulence NA NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 141531.0576 45203.393 13235.3073 20817.3005 14335.8224 4699.1322 9924.4909 5437.8319 9310.0584 13840.8111 12886.1076 193617.08 15527.8983 14387.6207 22641.3492 14289.4121 14289.4121 132417.3416 28162.7492 14063.8929 26105.6635 24973.8447 8787.5697 129392.193 9620.0925 17260.4012 89626.5121 40990.7127 13062.6716 21180.3422 9122.1575 11053.2986 12295.8945 7827.7345 13140.731 199594001 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11412.5524 4465.004 2683.8633 2204.1085 2089.062 5196.3518 4481.6227 14556.6418 93465.1779 5189.8752 4593.192 2278.5385 2278.5385 3035.1131 8986.3 4857.6125 4846.3123 5872.9769 12975.736 2483.3388 2759.2667 6033.5088 3343.7784 14758.8146 5962.3441 2433.3884 2649.7901 6807.6998 3420.3327 9534.3235 39059 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9971.6 4603.7206 10382.3559 6053.2887 13621.1099 161398.7791 3171.9088 10468.3502 7869.9985 5855.5661 154143.9938 8798.2808 13885.818 9306.1806 12172.1887 12172.1887 7101.4884 23514.1071 26478.3048 8757.0984 7228.6352 4710.0941 5277.785 17012.9703 12158.3253 5135.8758 21577.8853 14203.0579 22918.4469 6817.0065 9230.439 54253.0423 2830.2977 8044.1166 381151943 soxY Sulfur Sulfur Oxidation NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 5020.4943 5109.3179 5444.6816 31398.4856 6738.8532 3177.6784 8494.7243 4111.4399 6230.6126 2391.9739 150203.1884 11514.8079 8002.3157 56165.897 3251.2719 3251.2719 4646.9771 10830.4756 6683.127 4157.622 4275.7197 10214.0349 3518.5973 3010.9342 7775.2106 3856.7326 16968.588 12931.2607 3792.7334 4746.0857 6947.3173 3621.968 9510.18 262349341 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7208.1511 8233.9966 6091.5362 12106.2372 4872.6593 4090.2665 6123.5506 7828.461 4139.8501 159913.6579 7356.6649 6937.1271 6091.1507 4470.4678 4470.4678 6735.2245 13403.4805 9016.443 8122.7843 12904.9509 14884.147 4798.1198 5281.0069 10598.0368 4504.4825 19883.0742 7173.4884 18107.7884 6297.5536 5722.0104 5554.4114 4515.8573 11655.5401 374425732 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 88575.3236 5790.403 3888.9818 3299.1796 72173.2431 2832.7186 2832.7186 3499.827 2670.0858 15036.237 14187.0187 8312.0005 3051.5514 313211531 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 64937.3774 17083.2613 2805.0457 6359.2575 2845.1629 4147.7921 9500.0143 4865.0867 4865.0867 13194.9843 7557.9421 6514.6161 3491.9769 5144.6331 5670.0841 5189.7432 8744.8132 12786.0185 3849.0509 209503695 cara Organic Remediation Aromatics Heterocyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 17431.2474 20241.2228 11091.4264 6276.9792 20150.8304 6602.9447 11218.5369 6581.4006 37925.3732 14548.1075 19662.054 10415.3207 699638.8638 9985.5997 65841.4652 8610.6579 8481.1315 8481.1315 6555.6441 18129.147 24939.6193 1005192.8683 14099.5329 33657.9671 12007.8991 9598.0516 10409.9032 16664.7052 35152.8543 34019.8078 29226.1736 6789.6789 15322.57 12327.9761 6901.3215 9345.7835 149121623 endoglucanase Carbon Cycling Carbon degradation Cellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 13370.8334 5853.4657 4851.1565 4715.2028 9257.0696 17300.4417 5441.5253 6202.5573 11918.3605 3519.82 5003.0677 4560.534 3721.1246 3721.1246 2864.6512 11324.9682 10678.7071 6484.6613 5490.404 7221.7938 2651.5713 3635.0118 6735.8412 4537.8636 10951.34 6586.5332 7881.8952 3714.7481 6242.7905 8281.992 3595.1835 106889690 ara Carbon Cycling Carbon degradation Hemicellulose Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 64058.0468 156475.2189 268217.1891 17699.247 5901.9347 152968.9746 23155.7782 66068.8624 19403.5807 32774.421 27972.0713 1538594.1869 24997.6752 70212.9111 32185.3187 20877.749 20877.749 13305.5585 25202.7549 17718.4326 107554.0205 105487.4881 19532.8301 11164.9546 19462.3374 25121.3119 31581.5468 67929.0525 24646.5472 49708.3855 10572.5802 27393.0229 45653.3359 31138.2993 23876.0623 11527927 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Symbiodinium sp. superkingdom:Eukaryota;class:Dinophyceae;order:Suessiales;family:Symbiodiniaceae;genus:Symbiodinium; 13925.3033 6518.9368 6432.7727 5864.9224 2926.1524 7259.2717 9236.1154 5040.6081 93935.8117 7350.7015 6142.0692 10744.8911 5355.4776 5355.4776 8489.0135 28959.3091 11718.9035 14647.591 10148.6832 12144.2636 12570.764 6919.7637 14646.661 11859.1931 19979.2934 11456.4378 23398.6568 4385.7333 5545.2063 8755.7744 6247.4091 12688.3283 86284646 mer Metal Homeostasis Mercury Detoxification Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 22316.1368 5154.4807 6083.5245 100900.052 5539.5151 6375.9277 2144.3164 2144.3164 5435.5311 3393.5641 4330.6626 10374.6762 3384.1603 12701.5842 2137.405 13906.4138 8689.1857 3080.9937 4550.6813 2406.0024 374845057 amyA Carbon Cycling Carbon degradation Starch Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 26599.0382 11167.5861 125345.2099 17650.6079 23915.1651 26908.67 10925.1177 18049.3338 24687.8625 16974.9459 167714.3102 175793.0107 21463.1391 17447.6746 57088.8613 57088.8613 10013.8513 25449.7658 26762.4398 49542.6864 84757.7921 19936.3179 20517.3093 33360.4981 59258.358 17912.1803 38865.0176 26137.9747 34857.8026 10147.2809 176477.3214 26186.21 15781.7718 22556.7505 344338694 urec Nitrogen Ammonification NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 7112.9087 7094.438 20413.1993 51743.2768 5658.2213 5316.5645 5038.4859 7096.9924 7053.3379 123221.866 14939.6722 20825.3108 9571.7975 7659.2489 7659.2489 6005.8712 20061.458 14596.5438 16967.9443 14640.9646 18070.8267 8811.2279 5090.995 9500.4155 8606.4537 24900.929 5881.5882 22234.8566 5131.9175 9071.3607 8460.3319 5167.3731 11621.5495 256545718 atza Organic Remediation Herbicides related compound NA Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 5456.7243 4829.2827 2019.8117 31995.4173 3723.5936 4195.4721 6869.596 3043.9985 112804.4473 9908.2512 6070.6862 2848.0537 2848.0537 3694.448 9245.785 5578.6166 5457.7069 8603.3158 8316.7628 3052.1697 2218.3912 6436.3916 2927.1525 12678.3163 3866.8351 6788.4966 2778.483 4140.4159 4836.2881 2264.2981 7057.8493 315001626 aoxb Metal Homeostasis Arsenic Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 53839.8452 9606.8928 7207.8463 10262.8295 7292.3801 20401.224 4636.3606 9380.018 7954.2395 10253.735 338019.8731 12551.3325 14269.3249 9427.8117 7419.4983 7419.4983 7355.9608 21187.3227 15890.2003 11685.9534 14189.6261 9594.645 7363.3611 6293.4418 13707.052 12140.7217 26769.043 9308.717 15203.7497 14885.2439 10259.62 20633.244 7133.6497 14488.7711 254282537 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 4873.8275 2847.845 4565.4517 6084.5638 30961.2286 4369.2012 11210.2915 6606.0996 7273.0383 7273.0383 8632.8033 7888.5326 6834.9407 5264.1706 3785.8114 2061.1277 5511.8687 2748.9529 4302.8231 2021.0766 8343.5202 211956780 amyA Carbon Cycling Carbon degradation Starch Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 5201.218 5418.8192 3931.2416 2308.0623 6024.4475 6071.2495 4331.3353 6168.3181 134466.8636 10419.3078 3370.5053 3370.5053 4753.2484 9834.2782 3733.789 4192.8084 7030.0306 7935.071 5065.7964 4339.7522 5046.5635 11857.288 12241.9736 9999.16 7091.5262 3167.5219 6344.6973 9349.3584 4587.6022 6918.8531 49529682 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 39730.0113 23480.8911 28636.1063 85723.4115 8549.9561 35393.4243 20434.0187 22490.8272 23908.1591 39377.989 21917.0113 2093691.9761 35388.9018 31520.8225 33834.4498 32766.945 32766.945 18632.2099 46749.104 29342.2625 37326.8783 31472.3577 31597.2605 12408.1339 14827.8373 39030.2316 44922.1081 67002.81 25386.8145 30499.0795 23443.5162 21791.5903 308539.504 28454.1611 34930.7014 89902702 terc Metal Homeostasis Tellurium Detoxification Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 31712.2165 8463.8695 8326.6641 1878.0242 8726.2314 2108.9332 6020.1195 11746.992 5652.6918 96050.4626 28902.8137 14933.9939 5518.437 5056.1022 5056.1022 4841.5158 13531.1496 5691.6553 5858.549 6181.6695 8528.9685 3822.5429 4932.2865 9759.3257 3789.4778 27113.4128 7249.7312 10404.2799 5051.0814 9828.6237 9685.585 5462.6132 5545.0424 86556078 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 18809.9517 7200.5497 14206.0471 12777.6623 6675.105 11482.8015 10388.6178 9711.8306 11152.9465 14539.4255 7632.1107 312330.6527 20139.1265 16095.9224 9741.3388 7867.8467 7867.8467 11632.0033 17896.6242 13204.6976 12800.845 17651.1128 18388.0089 9841.4804 7221.9676 23615.2484 10971.4608 26163.6948 11578.6287 23427.0765 8239.056 11753.3728 11652.3222 17075.4734 22533.3897 90337173 B_lactamase_A Virulence Antibiotic resistance Degradation Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 18066.6268 18109.6865 46635.143 18026.0093 9551.9521 6891.4375 3005.7265 6509.638 7255.2316 7873.0398 226727.5972 12658.7255 13490.5124 10761.0133 8098.3611 8098.3611 6400.6927 25992.1041 13981.5477 13911.846 14170.1356 11514.5213 6252.98 6838.7086 24023.0677 8904.8948 25846.7716 14359.7412 17291.0056 7380.6525 10518.1546 6705.6664 7141.876 27169.9678 226303924 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6923.1603 1832.58 2615.6216 2009.0493 4942.6677 8128.2265 102180.0803 6689.6713 4858.7628 4143.1624 8806.95 6393.3873 5944.2624 6597.7846 4406.7988 7033.9086 2327.4247 24839.8901 9389.8173 11040.5447 1944.0029 3367.3735 4921.6517 2319.295 9990.6246 300692810 norb Nitrogen Denitrification NA Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 17204.209 31243.6774 9966.7328 23630.5011 17982.4961 6211.6546 13161.1375 13406.7163 5186.3922 12606.8487 11509.6726 9063.7433 342901.5863 14197.1919 19240.4829 11353.6927 8317.4136 8317.4136 9924.9026 21174.3781 17823.8363 17386.102 28739.8366 17352.0707 8491.0711 8099.605 23688.3475 9215.95 30363.4063 11767.1125 18629.4446 9840.2729 8900.9692 14021.4365 9048.5809 22841.7297 5678640 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 6914.3938 6986.0861 5010.6378 7705.787 4123.5058 5080.1861 3358.6452 112200.1116 6285.9845 5724.3441 6720.2362 6059.666 6059.666 4230.5738 7890.7403 7762.7979 4011.9892 4789.8215 8319.3201 3594.3159 4222.5927 9453.1373 5622.1117 15634.3652 9227.9224 9147.1825 4688.2284 5339.2837 4414.558 5315.4907 8905.7765 219112735 mg_chelatase Secondary metabolism Pigments Chlorophyll Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 4973.3525 7696.307 21465.0735 6332.1964 6649.3902 3405.9619 23727.7697 7115.0621 7115.0621 4278.6704 7710.8027 5343.5483 5488.7224 5366.8851 2152.3117 2768.9513 120405199 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5471.5077 15952.505 624792.7021 10099.6548 21717.587 10544.2205 39264.8015 6170.7104 2802.666 78438.0342 3269.3746 5102.5694 8614.6166 8705.519 8705.519 4069.6074 6412.0662 8963.5628 4985.3825 4096.8303 6523.82 2706.1777 14620.291 42580.1232 10553.7407 25991.5755 6703.266 4090.479 3321.3288 4132.5422 2907.5845 8839.6186 169832029 APS_AprB Sulfur adenylylsulfate reductase NA Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 102819.913 34419.1357 158934.8482 113232.6535 55133.9634 65608.441 275855.6524 186117.3874 84861.0136 96265.1604 112883.8239 70534.8548 3862024.0275 119870.6395 174777.1838 304355.46 126619.5822 126619.5822 128634.4694 143231.1158 71605.9698 184013.7885 194081.6804 405717.3924 57021.5751 69635.3303 113975.5819 114554.37 351733.1505 150710.9834 121823.9916 65599.2314 67788.1422 143443.1239 65613.388 134372.9614 18892543 arsc Metal Homeostasis Arsenic Detoxification Pyrococcus furiosus DSM 3638 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus furiosus; 188274.227 6302.1356 6000.9876 3881.6338 1987.1977 1987.1977 4041.623 5164.1316 2268.9435 3860.1884 11419.0643 2387.6303 23157.03 7040.2416 5216.7878 4019.1463 3306.5955 3697.0251 4811.4263 34102341 atza Organic Remediation Herbicides related compound NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 115132.5512 61266.5682 21716.8741 82770.9897 54742.5068 17705.322 29447.9674 48995.7013 55250.648 49684.991 36057.7579 821756.6893 28063.5468 53292.2891 36861.0088 55344.7455 55344.7455 28861.5249 81545.0288 41779.7002 30012.3345 44265.4075 33290.098 19368.5515 33476.1457 51994.8542 28803.421 92287.9323 49553.4344 81922.7213 35713.547 39479.2492 43432.8093 25422.4987 55531.68 149939136 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5113.4952 2999.4549 4889.164 3208.6943 76940.8749 6412.6705 330324.8434 8043.238 10785.6287 23743.3527 23743.3527 12450.6098 4226.3615 7251.7898 3577.7974 10705.2098 6907.9502 10743.0499 7326.9842 3565.8077 6716.501 5074.0148 3665.787 10300.7887 126729207 atzb Organic Remediation Herbicides related compound NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 108199.3789 116659.3201 17116.2094 26224.2673 22676.954 49955.2229 21551.7181 45895.1835 70975.7764 47571.022 692657.5075 64094.4655 58489.897 36963.6527 34146.0228 34146.0228 51829.9385 70130.8853 44183.3481 174356.9798 72991.4708 88254.7564 40558.8251 36486.7177 40479.7901 57088.1091 138753.8736 67942.2841 61113.4127 36040.8236 41491.4183 58709.3784 93273.3032 59258.5281 297150849 amyA Carbon Cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 147014.4524 131040.1363 498810.324 33356.6967 144340.3645 377968.8655 27544.8697 226536.8002 93203.8733 241148.265 445521.5291 118432.5473 2394760.4919 876223.1085 108643.4467 216820.4127 386400.6932 386400.6932 402708.9388 164987.3285 91475.9901 177279.4836 109371.0105 125621.0366 51470.8687 81342.9293 154047.8356 181987.8562 233824.4797 202176.3653 164189.2987 42519.2463 98006.1256 128534.9494 123991.1646 74632.5547 85089754 RgaE Carbon Cycling Carbon degradation Pectin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 5553.9096 8031.0004 113982.2501 2285.6182 27912.758 3974.0167 5442.0599 16850.8809 135029.1446 4655.1953 2961.5662 2961.5662 18386.2809 8665.7048 10060.57 7546.3765 23635.1226 3030.792 7162.1764 3340.2938 11403.9587 13115.6236 3724.1095 3896.9029 5675.2559 26909.0093 9167.2381 114339358 cysI Sulfur Other NA Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 30467.8466 106317.179 28680.451 73684.1282 58739.8786 5528.6913 18999.0976 42870.5272 24393.9897 1510800.4642 23217.04 27242.3061 84035.6833 34116.9129 34116.9129 11091.3243 22362.1213 13286.456 35363.0709 52446.4778 8137.9518 15757.7158 37904.614 67881.9099 29712.0801 47009.1228 25057.1409 81435.6533 9340.4973 125345.9422 34949.4943 20517.6546 125184.9838 398237528 badi Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23525.2459 26192.7559 79971.5294 3625.6512 7558.1685 19793.2502 14597.3006 20718.7362 13207.8176 11446674.5897 105193.2903 12737.7081 17052.3543 15801.7933 15801.7933 14573.3338 73218.5634 26439.5387 12585.4508 29165.3009 11718.4987 7421.2577 8456.7588 15771.2109 10374.5516 73177.7976 18725.3934 59566.6358 9086.0375 47219.2387 26399.2042 25381.8745 21581.2306 219939022 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6443.9748 6766.8416 10017.3409 7632.3767 3025.0203 5591.7052 6137.193 4243.8097 7381.1164 3712.971 8678.1743 5775.3285 5775.3285 4344.1013 7577.7101 5897.6237 5731.5727 5325.4311 3296.4302 7045.8478 6698.3362 2982.4573 17290.7663 6516.2881 7488.8295 51653.5979 3006.4918 4587.331 2489.3337 12284.4099 340346392 gdh Nitrogen Ammonification NA Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 31674.0742 21123.1736 9619.7205 16409.3296 139973.7965 9046.2928 11453.1232 31962.6337 12200.1931 25981.6235 24762.1026 41128.8274 431281.6043 29550.714 64447.4529 30931.2593 21306.6282 21306.6282 20280.2574 37903.7035 24834.7217 19592.6845 39533.4551 28610.7364 14855.6519 90064.8601 22851.6426 17802.1385 63308.367 21089.5124 38439.5507 13339.8556 27959.7768 26057.2559 22323.9188 17836.3209 345633048 mer Metal Homeostasis Mercury Detoxification Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 39270.4582 31254.624 9868.613 69892.3211 15871.1701 19766.8834 84362.6285 19538.6612 63544.2504 45608.6763 27569.7813 521507.5751 40353.6702 502183.0622 221977.5479 41558.5287 41558.5287 15527.6076 49885.4637 173244.9333 23440.1797 68946.2908 66330.9275 17093.3547 26098.3362 28887.2326 39709.2809 98201.576 442290.9686 47097.1265 24151.7067 31120.7202 32858.7838 21055.5426 27284.987 380447917 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 73334.7136 24520.5776 25477.2301 50811.3149 47492.8845 14949.5799 95465.3294 221323.4812 19102.8012 29022.4976 41083.9688 19564.3458 542189.7905 27881.4883 44051.8914 29894.6252 58018.8328 58018.8328 78623.9279 57018.2345 24033.5097 39901.202 56164.7261 53083.1139 16120.1971 17005.6843 54493.6106 66078.4357 105858.9682 50208.3882 54635.907 22761.9023 25413.8826 42729.8495 41188.6182 62932.2909 40747919 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9720.8967 10144.7781 4914.728 4953.7801 6798.866 2248.8551 6829.4976 6044.2601 89074.8274 16690.1691 4081.1288 12237.0322 6075.713 6075.713 6694.4433 9142.9945 3770.9956 3749.9661 9244.9044 8267.2994 2795.1345 3394.7162 6231.9107 2489.8976 9158.3793 6050.72 7075.9014 5261.1281 8406.0209 5343.9068 2621.9838 6162.5321 114570918 phytase Phosphorus Phytic acid hydrolysis NA Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 132235.9846 29756.7262 59726.5363 132937.1105 78653.4368 33642.3153 52285.2496 408516.1068 90730.4696 86337.1434 97647.9112 100446.8787 1095745.5608 80232.9929 91028.3616 204275.6863 107325.987 107325.987 49532.587 146217.1722 57498.2397 112010.7985 107975.2629 182844.7354 105214.7686 89345.2445 79416.8479 98548.4797 334428.5714 166903.5566 110827.9774 113086.8756 69458.2719 87113.3529 293300.1006 113982.1923 296093606 amyA Carbon Cycling Carbon degradation Starch Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 80250.3137 85695.045 31177.9384 40234.8237 37585.1323 28997.4366 47822.799 38712.216 32478.7083 61822.6422 26702.9905 551962.221 32442.976 46148.4831 89834.7842 29669.5481 29669.5481 15702.2897 83431.3864 31963.4317 52947.2242 83279.9134 37435.9242 48659.2758 28908.0666 43572.3089 21919.442 114969.854 48195.4269 50054.042 34677.8329 36741.3526 39494.029 156611.1334 28650.3826 311284201 narg Nitrogen Denitrification NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 133578.6133 11015.3392 10998.1514 36450.1207 18446.9315 17356.5564 8753.8667 53922.6214 20526.9137 33148.993 19483.3731 350067.397 37857.5696 30194.8144 18723.1267 33668.2117 33668.2117 19406.553 30251.6242 49793.8296 16097.6803 42581.9488 14132.0845 15963.2586 31532.1784 19828.0343 20372.9774 46782.8713 25347.8296 49186.5095 23075.9387 29973.2512 28564.1883 45518.7102 22529.8271 288336913 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 11718.0737 212502.6925 25596.1831 20014.0439 10554.1912 10043.6484 15122.2687 14362.2758 7277.701 16993.0283 7702.1291 168828.2776 13888.2356 11185.2409 7849.5113 6398.2145 6398.2145 9696.2869 13055.3841 13664.8588 11337.1762 153573.5748 10125.0741 11197.9759 17164.1559 18768.6359 7015.7312 22939.6797 11190.1219 15125.4631 9259.9358 10275.7236 7416.4284 4974.8085 14454.0945 373876341 b_lactamase Virulence Antibiotic resistance Degradation Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 13215.5907 11234.126 30065.7081 7376.9021 4628.5061 11674.5387 4190.7477 8283.263 5076.7163 146146.775 6570.0389 9795.57 14727.82 8373.8455 8373.8455 4538.8197 12403.0698 9268.9246 8647.0641 14152.6982 4645.0433 5011.5196 5655.4605 16440.2727 4453.067 19181.8622 13291.986 12159.1025 5855.7939 7548.5411 6374.5962 4556.5695 7425.0138 256830948 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 16343.9284 4955.3773 20950.893 19306.3033 8638.2851 7845.8842 3652.8841 7258.6514 2984.5747 116796.8254 6615.5691 5348.3863 9020.9059 5670.1671 5670.1671 3253.4288 4727.5744 13641.4444 4060.1819 11009.13 2311.3383 8446.3909 13664.4468 3564.6204 5638.2291 5245.9463 5227.6121 49062 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7152.453 2276925.774 647828.1443 3600.8894 2869.0871 5813.8134 60750.6474 9386.2963 4572.5575 3615.0276 3615.0276 3284.8941 10364.572 27709.1689 7073.0094 5600.3032 3382.2099 2634.1283 5310.6617 5592.9376 6218.1243 9940.161 3182.5214 3060.0974 160159.4636 359821952 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 18078.9279 48797.209 8044.4395 12213.4715 6741.676 206366.7047 6817.6292 11351.2482 71922.1325 23944.0181 20990.2558 349954.7085 11411.6572 15192.9929 11334.5205 28937.0631 28937.0631 14600.5649 15314.4441 27087.3208 9319.882 38393.6007 153611.8755 4944.3169 12804.1857 36508.8994 30609.7044 120082.7119 11922.1279 37192.228 10241.3845 17962.7063 21215.4111 7024.19 10169.8312 302492525 urec Nitrogen Ammonification NA Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 8920.4565 9757.0617 7290.5641 5461.0451 5460.9083 3399.7634 9915.712 8695.0526 125652.161 19706.116 7744.3604 4638.6706 4638.6706 3552.0831 6658.8968 4064.8197 4372.6626 14126.4317 7848.3818 9538.7282 16479.7034 10032.1488 14227.4138 4482.8831 4594.6461 8941.1579 3060.8289 93356795 cmci Organic Remediation Aromatics Other aromatics Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 15921.5239 11870.2299 5089.2333 28222.4087 4707.7567 11321.6297 65828.8012 43518.0728 37676.6034 8834.3104 190460.025 8153.6725 11232.2193 17536.7636 12573.7059 12573.7059 12606.0311 24373.5157 12777.8777 20860.2681 11587.4621 8553.0706 55304.8669 19371.3473 23909.5875 11506.6244 53148.5664 23989.2703 127795.1348 11808.5437 29056.8772 14582.695 64997.1586 23850.2427 68135565 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7569.6844 5220.4673 7117.1474 5829.6922 5968.048 4396.4136 7877.5554 8515.1772 3422.4823 202839.1645 8427.5405 8090.5561 4237.0133 4237.0133 9630.7583 15521.0821 11207.9119 7830.0652 16327.2135 12292.4283 6085.0477 6625.8721 16283.9226 4606.0758 22771.1062 9722.1005 15715.6264 4391.1273 8011.473 10784.2807 4799.6103 14640.8258 25900670 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 22871.7765 15129.0221 7817.558 9905.1045 3206.0952 2268.2629 6893.2216 30991.8052 2879.4823 103820.6343 8718.7409 6166.7833 5328.1516 1854.752 1854.752 5132.9044 10751.73 8640.5817 4661.4083 8980.4569 8527.2452 3764.4114 3546.3921 9700.0162 4337.4662 15889.1934 8649.7806 10940.3872 3041.4262 7251.4638 4884.1949 3802.9612 9202.4038 332377138 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7672.7516 4644.5034 7157.3623 21299.9773 6325.18 5335.2262 5232.8628 3981.5801 85882.7663 7781.9697 4178.2721 8787.0344 4153.72 4153.72 3982.4368 11603.5594 5146.6618 4525.6351 10447.8659 3978.1174 8966.6559 2628.355 8104.665 4904.2599 7550.632 3543.2804 4216.8512 3757.0749 103487238 ppx Phosphorus Polyphosphate degradation NA Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 38900.2645 17162.4654 5916.7365 13781.1307 132862.4215 8111.8505 23613.8463 94015.5705 14389.4602 22700.6435 15783.959 305829.9534 17893.7793 18669.3218 37956.1974 24563.3818 24563.3818 32655.0682 29783.1219 11954.6345 33000.94 20560.1107 119771.0981 15250.8467 14411.1079 24797.8455 23881.309 85045.744 28015.7538 19536.4294 15236.0361 19386.6911 16231.7459 11400.7633 9671.5118 209420752 pmoa Carbon Cycling Methane Methane oxidation uncultured methane-oxidizing bacterium superkingdom:Bacteria;phylum:Proteobacteria; 9680.4389 14826.0058 4700.204 9843.9433 3137.126 8713.8258 6182.1447 5520.1158 170934.6439 4666.9845 11097.9744 5725.9418 3031.1731 3031.1731 5221.7995 21400.059 9345.7054 12529.5456 15161.518 7586.4885 5957.4869 5129.1478 12259.2816 4618.5686 70995.6477 13464.2383 10515.6023 6392.7165 7862.7175 9741.91 23556.373 12367.1286 151578 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 5583.1532 13582.2028 21188.9408 2951.1817 5383.8347 3399.2965 5158.4253 3980.6057 189916.9848 7049.8993 66613.5154 9743.0964 5879.7055 5879.7055 4794.5138 10637.4379 6592.779 54865.2455 8145.5282 6116.6846 2183.4506 4953.8288 9552.032 2907.258 10227.3163 6425.495 22046.8492 2814.7147 7376.0958 5943.592 3027.4508 10430.9672 114307831 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 243128.7267 11922.4394 68947.2245 30796.9829 58144.8888 7607.9236 72279.0074 38734.7179 153725.1677 29064.8731 145809.0168 67751.059 1405930.269 46142.6521 74837.9835 88569.3689 491251.4501 491251.4501 36683.4757 107782.6216 29679.3937 108698.0209 91315.466 646791.1026 61167.2293 28133.1926 194772.6627 70472.7184 173636.3429 64244.3297 56253.4901 24709.4658 50102.0498 52311.257 37030.1564 164111.2826 167594299 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 21585.4465 52759.8585 4765.6354 4470.9676 2743.4572 6655.6435 5503.4147 18911.9074 146231.0843 7630.6811 6347.8185 7244.3612 4800.8859 4800.8859 6095.7384 15691.5179 6143.2646 5963.3169 91033.3402 6924.2824 5480.6324 3950.7099 17904.5603 3968.4463 34713.582 13498.606 10427.037 3428.4769 7823.4752 24862.6575 3704.4509 8993.8182 56129149 cysI Sulfur Other NA Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 44298.3333 14465.021 16979.6561 295564.451 10401.0943 5504.8962 14923.4356 16635.507 15096.8825 23820.2789 25029.146 32201.5789 316115.0288 13615.8422 23433.8031 48658.2257 312688.2819 312688.2819 11747.0566 75817.7898 19750.5284 15964.3772 56418.6934 35593.4292 22189.5357 20038.6055 53278.5669 25979.1202 55513.8983 60114.3065 29891.9819 46813.4539 32536.6936 55341.8889 14401.7392 30968.3291 319899385 pgk Carbon Cycling Carbon fixation Calvin cycle Bartonella clarridgeiae 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella clarridgeiae; 5176.544 8446.5401 24356.8573 9972.9903 2695.5035 5490.3774 5105.4218 6287.2323 4020.5701 139676.1383 6011.0449 8548.5702 10684.2063 20580.1683 20580.1683 3641.2902 12601.3319 8048.4745 3899.5176 4854.8529 6140.0328 2936.8504 4974.705 13673.445 3595.2425 12154.3239 7339.4493 11324.8215 3966.2881 4768.3333 5314.6694 3151.2652 8717.1981 197106169 terc Metal Homeostasis Tellurium Detoxification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 34729.0585 9032.2904 12213.6844 20171.7751 8627.4339 11838.9668 14687.0719 13152.5491 13989.1131 15856.3459 45211.3918 328579.5225 24294.3624 22126.2591 44127.4842 22174.2372 22174.2372 13464.2575 50135.2808 12521.0983 17084.5918 41999.2532 14057.1356 11177.8461 13596.8777 19537.3673 175392.9068 37341.8438 17376.7504 35181.8406 6107.0342 17299.9352 18262.8426 7769.0606 17044.9978 395005583 poba Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 109534.2227 13145.1922 147605.0103 31247.0699 76786.9781 115655.8535 53971.7292 83688.4363 50789.9722 59926.9196 59544.2524 225427.3265 1538088.7684 91554.5105 65330.145 130936.6549 109892.0697 109892.0697 75430.3171 108908.5768 57627.7787 177478.3829 165845.132 113339.3571 60690.2146 67375.0967 80297.1902 58625.2775 764627.4714 100914.6994 74036.192 46435.3952 95928.705 95683.8567 55872.6976 167664.3508 260574364 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 560716.6693 17340.7517 208120.0992 70132.1206 105046.2038 13796.5135 86309.9839 89656.0758 97228.5164 115738.9503 198284.5499 150896.2967 2037233.5704 69787.5637 269019.5704 360810.534 236234.5183 236234.5183 288013.1325 122540.3265 117553.839 95142.6022 482212.9204 85326.0649 170939.1348 184430.8577 148195.092 108979.0114 936950.2167 531390.4046 158667.7045 156451.0851 212921.7181 136862.1861 150719.8499 113548.7782 160917583 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5320.9249 11717.5781 2590.0604 3472.2642 4888.1113 13682.8136 6197.5907 6769.8142 12033.3223 12033.3223 2885.8762 4473.7632 2134.7404 7538.3061 6233.0636 422314129 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7359.5618 6765.988 10013.45 4059.304 6137.829 5092.0018 7489.0497 7177.4956 5684.737 203263.3264 7864.9099 10113.4067 5141.235 3220.017 3220.017 5655.4084 11654.4706 8357.7082 15775.4271 7731.2263 9543.7887 4167.9601 3948.2848 11280.7733 3963.8787 18463.5805 4931.2714 9251.7989 5751.4119 5094.4789 5809.2749 3684.377 7965.4667 56677636 soxY Sulfur Sulfur Oxidation NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 180169.4751 65760.9077 73684.9278 147341.6945 267312.2049 109887.1715 124086.8323 301992.2773 58108.847 316236.8717 118000.0195 241341.6607 2811910.8843 189212.5556 240602.9853 559753.4983 280502.8634 280502.8634 93887.5172 230339.2156 90811.3462 72606.3302 310260.6675 592344.7237 257672.8447 100302.9906 357545.683 125372.5371 564548.5463 229914.5275 183391.9674 62829.9959 119977.077 205876.5176 55054.8837 80747.158 307735940 cysJ Sulfur Reduction NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 16971.3115 17505.5325 29921.3284 23854.5582 4852.7632 9929.5992 13577.59 4573.7912 13235.2361 15687.151 12081.2253 324454.661 14736.0483 19210.9226 34732.408 19030.8369 19030.8369 16517.0708 24081.157 18193.5131 23170.6979 45101.5918 8954.7752 11029.1992 7790.8492 12459.0688 42489.7317 48699.8684 11387.099 32358.1146 9596.4078 12810.5054 39516.6183 5765.2626 14158.3611 223586081 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67468.3687 15170.3004 9005.0489 49681.1104 48043.7517 4934.5786 32661.1079 29174.1089 25586.5664 18311.5802 25685.7544 23463.1154 846203.1229 29919.5849 36035.3085 23584.0657 22041.8334 22041.8334 13311.2855 42713.7401 23913.1459 293487.9014 41174.4326 20718.739 16482.1169 22639.3234 29995.0988 18637.0995 52521.6648 25547.0773 27258.8933 14954.0116 47972.1473 18834.613 26470.7223 29531.4914 146308153 amyA Carbon Cycling Carbon degradation Starch Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 205901.3708 74184.6542 148783.0996 209010.167 57770.9071 42899.5346 77357.9716 237097.7396 367662.5228 143026.3196 75394.6285 102679.7332 3688317.9861 451428.9661 212139.0335 439406.7313 238119.9296 238119.9296 133199.4673 146150.078 110320.026 253648.2237 493935.9292 260365.2321 200554.5985 137883.9956 224975.7294 158143.3658 403981.2309 168085.909 164207.2202 121589.2269 142094.5838 159377.8665 122619.0756 503335.2837 338971841 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 6917.4738 3895.0326 2665.1118 3773.5194 6036.0973 3276.9131 166360.7936 5351.0024 4279.0999 3852.8822 13612.4797 7610.1026 8089.3734 5511.0997 7924.8364 2558.5329 5186.2114 7625.9018 4185.6125 99712.5261 5817.9491 7924.63 3268.9405 4329.7264 5147.8544 3273.3295 9381.2037 371719467 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 8818.078 2536.4021 20077.3009 9012.6386 4170.8848 4540.7225 3957.8284 2986.1847 2986.1847 12460.5192 5150.4066 20602.6971 6816.4243 6311.1984 4382.5859 21895.8366 21390.1192 6647.907 13810.2183 255924363 amyA Carbon Cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 23049.7758 343184.1006 10567.7617 6217.8608 2194.1082 6395.4766 6300.5451 5155.9029 80047.5402 8120.4241 13988.656 3814.8533 9031.0825 9031.0825 4643.1593 10669.8029 4258.9516 6045.235 9822.5306 12532.253 7267.3675 4848.3948 7448.6362 4529.4903 12069.6204 6330.3443 34142.1143 3999.2278 8232.4917 5371.3706 10327.8981 6721.5818 387221225 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II 'C75' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4001.0473 9009.0495 9009.0495 4643.9397 4447.6477 349796919 sqr Sulfur Sulfide Oxidation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 59161.0516 15812.7218 24266.5133 59056.2796 37648.5659 6419.4977 25955.3021 67154.9849 44730.4886 42945.865 51734.0439 50639.1552 2708968.7858 123035.9952 60108.8335 70067.8364 52747.859 52747.859 35529.9254 209471.2667 40551.8873 107155.7504 66125.1069 44884.4261 32827.9887 30244.9476 49537.0948 24745.1633 99117.1506 82880.5938 57639.3136 29228.7652 32691.8906 40760.7039 39687.875 134533.9141 227069435 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 12934.9439 31948.8098 10624.1938 11726.4703 5088.7672 9340.9443 7294.9823 15532.1824 26465.5326 11279.2832 154372.4494 13615.4657 33371.0785 30750.1707 8914.96 8914.96 9230.465 49984.0133 16036.9687 27551.8665 59204.302 13105.2327 10827.809 17601.1661 15015.7524 11708.3215 30561.4085 18109.6904 21391.0439 9656.1164 16499.8726 20598.3776 20849.2242 25878.5697 192897582 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 10419.8081 4306.1364 13491.7494 14404.9519 9081.7934 12863.7129 33243.589 176374.2853 8033.9375 53031.4782 13799.4596 49738.704 49738.704 17778.2886 31177.9386 13514.2831 12913.1029 59976.4043 11183.5604 5350.7004 19115.0074 8031.9222 7702.8659 27586.0194 10742.0586 15175.5487 3772.4451 24383.5779 17427.4296 6704.3161 9357.1774 120325752 urec Nitrogen Ammonification NA Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 50890.4546 32891.3291 80737.7793 24257.038 13269.0866 120911.1513 100989.0463 71898.5511 40300.1579 31372.9504 34930.0784 1008811.3549 46356.2508 39970.6418 29676.7529 53363.5349 53363.5349 63960.3792 63758.2711 27895.7532 230996.332 74944.3718 67378.2116 21422.0199 21441.4584 49918.1317 46088.7091 106458.1865 45671.5419 47807.308 32119.6122 33155.8086 36883.5184 35281.5155 98566.3062 336115205 narg Nitrogen Denitrification NA Bacillus coagulans 2-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 3609.8723 6875.7482 2946.2412 8699.4857 3318.6029 5155.1291 2671.7834 2671.7834 5925.7054 3990.8143 5553.0652 2615.2684 3006.1171 4828.0741 4712.4711 6228.0991 3001.4655 344339745 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5364.231 3010.9755 3725.7173 11714.5925 4774.798 69049.008 16337.2336 16337.2336 6793.0436 8046.2897 2726.8754 2601.268 8599.9888 4664.3157 4790.762 3665.5094 2818.7677 110598809 dsra Sulfur sulfite reduction NA Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 15978.4343 13639.6632 7903.1344 19914.3879 11739.1514 13043.0694 9312.9622 7901.3768 14755.3163 14827.1039 8079.1639 424150.6834 17797.6563 18139.9841 16767.3405 9798.7206 9798.7206 13379.0516 25619.6634 17748.436 14714.171 23413.1157 25890.3178 9759.0392 8156.2744 18711.1441 6437.5804 36116.7159 15121.7947 25417.7561 8783.0544 11090.1569 21755.638 7699.0856 21515.2864 154159343 phn Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 18643.6231 8823.0269 5357.7018 6340.1913 3320.1173 3271.1687 4125.2702 6641.6254 127673.1463 7902.3881 3832.5321 11119.8366 6474.36 6474.36 3900.5349 32535.492 5432.4075 15077.5942 7775.0063 6046.4435 3007.9043 2902.1834 7180.5745 2588.6604 9394.2342 10103.2917 12402.9884 3017.5764 4456.7341 4695.3553 2469.9357 9765.93 299767098 mnp Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 12631.0509 30138.9964 42344.7346 20604.0219 2328.323 8064.0065 5359.1023 10862.5146 16704.4114 206583.2799 18332.1344 13446.5597 25579.9747 12968.4898 12968.4898 5310.1209 6845.7265 10137.3298 39424.3383 8737.8785 12290.6337 2529.8149 19439.5587 120007.8554 6355.2991 20396.9306 24298.3172 21914.0211 7021.1151 13065.9306 8641.8633 3407.8285 5285.3758 22294871 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 4547.3424 13790.6824 6624.6762 2558.7425 2558.7425 4314.3988 8125.3317 4470.6689 11402.7999 5082.6299 71325.5696 2939.9532 2767.1891 8477.6451 6502.9731 4264.3753 3736.2302 359790462 exaa(moxf) Organic Remediation Chlorinated solvents NA Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 16315.0335 12350.1653 10015.7504 19357.3651 6963.2842 7803.8343 9107.8497 3718.3906 7094.7114 18449.1358 9973.2308 183960.2382 13593.3194 9953.7597 9912.0063 11182.7352 11182.7352 6969.5475 16911.1981 20334.8576 12480.3774 14913.79 10719.5443 16405.816 7631.1374 18427.8168 8182.6105 30567.9484 14001.7073 34390.1039 13327.4194 11873.1548 10909.6399 6543.7842 19828.0363 253778112 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aurantiacus superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 11486.1924 5669.9683 4714.0683 5325.3481 2525.2405 2819.7013 6894.0484 5962.8589 3547.8737 118950.6756 7691.2856 8970.5425 4586.9925 3847.7174 3847.7174 5829.2402 13953.2076 8668.9307 7962.8754 7577.9549 5758.8674 64940.1219 3877.1393 7705.8184 4501.9402 19498.2696 7581.3882 8826.8538 3609.0524 5157.1751 11074.4992 4241.4254 9885.2909 217970264 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 111309.2356 13314.2653 655136.9247 164356.0756 71859.2859 7660.5521 42652.6136 38129.8105 79807.691 27979.5866 105410.9165 80794.875 1275256.1904 37743.0278 35826.2696 52233.6618 45330.0432 45330.0432 28759.91 65385.7605 28451.3255 57825.5583 805548.1845 203622.6968 34422.1052 55949.8334 29755.5539 40487.108 111695.6588 130343.7507 52369.0503 40955.6527 55653.1819 46993.3288 36755.6895 53155.62 291341791 vgb Virulence Antibiotic resistance Degradation Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 16098.0655 79219.9193 29359.4655 791370.6753 91120.9785 17549.3935 94714.6176 29148.5787 16912.549 83811.6938 37723.0437 642667.353 170060.188 38047.3622 121871.528 48064.5933 48064.5933 33623.926 32645.0725 26834.5883 6720.1277 125977.587 10685.5894 4706.453 47817.9652 153097.8943 29284.7251 65365.9349 129569.3932 66559.0391 15692.174 25122.7758 74603.0569 9208.5874 13679.5604 73538845 hbh Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7078.0657 2987.9688 4208.766 4514.5167 2241.7221 72005.5467 3796.7152 3558.7863 6940.9442 3275.8431 5156.5014 4165.2869 2535.2128 3112.1053 8307.6135 6298.7453 2505.1283 3397.9253 2969.3073 2126.1274 7378.2647 192290053 trze Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 15013.3482 107939.5046 8358.9882 33094.6618 9237.2075 7506.871 4222.6076 17609.2782 23693.5095 18206.358 177799.2332 9685.2676 12317.1734 37030.7655 21434.0528 21434.0528 5285.4831 34735.4974 9257.5829 7902.1031 12949.397 9249.4466 6393.1981 11308.7749 40352.927 10978.949 24659.2962 22438.7683 26754.2231 10096.1266 9133.8269 16498.216 20488.4933 7466.5226 83972408 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6842.2104 9057.1324 7122.5495 2171.417 2171.417 3613.7132 5805.5376 5304.6607 5839.2153 5974.4216 2338.2372 8320.3267 3451.9616 4225.2279 7511.766 2609.1477 3994.2122 4235.238 3285.1458 7880.8537 150006666 arsc Metal Homeostasis Arsenic Detoxification Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 35478.2286 6074.5681 7036.1365 7711.6087 12449.2268 15286.1571 10198.9649 7999.7087 5893.7901 3103.2186 137859.0025 7700.6497 7980.0323 4340.0069 2683.6336 2683.6336 6009.698 13636.8664 7830.7744 14919.8947 9586.2111 94024.8557 4035.2097 3961.9461 32358.3097 28843.9749 16176.5521 5828.3777 8023.5876 40267.8333 5938.9023 5108.6956 4233.6734 10532.0874 388267215 pcpe Organic Remediation Herbicides related compound NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 3703.4458 2832.7292 2274.7021 3601.8771 5059.1157 5255.6442 2501.0718 7359.4578 3963.8535 2204.6467 6711.4185 2313.6633 2756.773 3399.2739 7230.41 2913.8746 4779.7957 254414123 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 4227.6039 2138716.9656 4463.2331 633792.1253 2390.906 3973.1995 4399.6596 4128.4661 103605.856 272908.2073 6066.433 6116.0419 3930.9061 3930.9061 5832.4407 3916.3438 5252.1634 3995.6444 9441.3678 2259.8503 5560.4705 1638.8457 2723.6662 5258.7119 2038.4761 239518796 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 14432.6754 5551.831 15891.8619 13345.5534 4140.9561 6939.8275 3467.9761 10850.7015 10340.7701 5520.9907 515905.475 10161.6286 8885.5654 9512.3649 5841.5055 5841.5055 6906.0524 14111.8519 12157.3834 8770.9798 15041.7515 15800.1404 5163.8368 4907.8654 12859.1837 3966.258 25586.4251 9235.3773 16674.1208 3985.1311 6584.4927 6790.3738 4303.5043 15451.9265 108766362 nhh Organic Remediation Aromatics Nitoaromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 138244.3172 742751.5942 34505.8628 14696.505 83745.3714 8695.926 85027.0872 41429.5162 22808.8023 17771.2693 58588.0817 34774.4285 763243.1975 60441.4049 65022.6292 77489.512 58587.2974 58587.2974 48366.6051 84215.2328 57663.0678 38822.854 185218.0342 29885.8872 33424.5931 29349.5288 45222.8009 35845.5731 143445.3917 54520.3921 101353.8398 31204.8188 69979.5015 75021.9368 41528.6717 36467.7012 328523611 amyA Carbon Cycling Carbon degradation Starch Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 31812.9515 10919.6023 28631.8723 16158.4901 30751.7016 6709.5602 14051.2878 20815.8259 24380.9752 17537.789 28156.5176 58309.1799 528308.1577 80402.6492 70942.5862 39277.763 33412.0779 33412.0779 18896.7325 46026.4342 33583.3552 31269.8584 128178.1677 79838.6439 22828.003 45703.8191 41368.0117 16082.0452 111340.6191 38007.7161 52073.3841 18259.3469 26867.706 30989.2899 34860.8767 38792.6124 383330295 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 34438.8741 23481.7162 14599.7668 33250.1127 40737.7444 20414.1243 40608.4408 16689.1757 89124.1684 28404.1527 18176.0036 13095.9432 418080.145 26765.7508 26111.7815 44935.3707 115187.6646 115187.6646 12677.7366 22142.3114 18678.4708 14479.4834 19994.7414 49733.5918 17019.9751 10140.533 28503.5887 19034.6203 39376.8641 20838.9221 26820.6349 16979.6596 11821.7855 12014.1113 8835.1952 19511.4391 334341117 amyA Carbon Cycling Carbon degradation Starch Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 95013.7857 8477.8672 254475.3699 92597.9083 63280.2661 2689.7311 14406.2126 3083.1255 105430.1752 6034.3828 4028.4456 3151.7986 3151.7986 2704.6452 27659.1137 3737.4975 14140.2199 8519.1114 7879.0466 4721.5314 3130.5625 9344.4755 6929.9443 11431.788 4402.4271 8022.4359 4697.0433 5291.5865 6860.7832 4638.2231 6774.2359 118473311 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 13908.108 5366.3389 4242.4874 6811.7833 18043.2747 5388.2308 8559.0163 12089.8844 11908.1239 235567.0479 15321.3652 14420.8571 4747.7447 14272.8027 14272.8027 7296.4827 23134.9745 16189.2816 8643.9237 10826.7689 41415.4837 171075.9199 13170.4557 15830.1662 10580.0222 29919.3249 23386.3278 17161.6487 6177.1764 136732.6057 10581.2457 5809.3435 14666.252 151561582 phn Organic Remediation Herbicides related compound NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 11176.5158 4193.0462 6650.7417 85392.1078 5640.162 7930.3947 7291.2768 5188.1477 38806.2032 9133.9508 4564.6744 6080.7598 14598.1153 4377.1228 3331.4368 29167.9931 8384.6448 329849567 poba Organic Remediation Aromatics Aromatic carboxylic acid Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 86421.5827 15172.785 125808.2641 145705.3045 78268.9722 17061.7296 47255.8382 94914.5527 34743.3022 53530.1376 66413.915 116874.1806 1928066.1024 387949.9608 133245.5412 133078.0763 134443.8727 134443.8727 91056.835 116096.6603 76776.3597 67044.9845 97259.7006 131105.3286 102731.4164 71479.9716 105846.1204 62974.3436 253306.6647 102126.0168 142903.0099 66708.7449 104175.193 134146.543 64321.2767 83225.3931 254271889 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 35890.0035 8805.2781 13638.3205 34546.8195 13104.8944 16001.981 102363.7838 48523.5174 20429.655 20564.8739 30523.3761 435321.9193 29777.8826 19893.4908 15067.1489 13686.3113 13686.3113 56746.8697 80909.8867 19687.4731 23426.5913 22231.7211 16161.5428 14889.8799 19083.6636 42714.2834 14992.7275 89601.0193 48280.8201 35794.6555 9944.9168 24454.462 13654.7033 13536.9265 72760.9818 87281040 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16596.2866 503773.9563 187765.3807 69643.6376 4717.0919 66122.5881 3356.0172 11655.886 6968.317 8427.5178 166635.6438 8906.81 11878.2051 28705.2194 20416.7297 20416.7297 8775.2733 18853.625 12346.4882 22312.9473 14314.007 11195.8692 6496.1257 7701.9557 18922.9955 7090.6887 20940.1761 21600.6848 19853.7122 4773.649 11857.6196 10654.3417 9386.3907 41155.1507 86142874 pmoa Carbon Cycling Methane Methane oxidation uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4142.85 13201.3117 18703.818 3778.8489 4235.7289 4235.7289 5050.8733 4092.6626 5250.0869 6313.3119 4484.4191 76056969 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7535.2609 5343.7182 16942.1325 8762.7833 15804.7216 2692.3974 7690.9379 9793.9896 3831.5273 67563.1896 11697.3047 8412.8682 6999.8518 5743.5091 5743.5091 3353.9374 12390.5737 7253.9607 5001.119 10072.6498 19803.389 4699.3788 8755.3889 11442.1833 5814.1981 17305.6333 12412.6664 12608.3047 4763.4228 8577.6116 8675.2375 7724.3361 23060.928 313836067 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium acnes HL037PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 73587.4364 112259.6411 47291.6821 20467.8985 22658.2766 6960.3648 63422.3189 53066.7733 9901.3424 30519.9844 33073.0301 66447.8559 781684.0942 40507.5588 58182.6585 44649.347 35652.5142 35652.5142 27952.7986 103163.056 43473.832 44095.1911 42980.5268 99977.1418 35019.3522 66252.6331 44856.919 53895.4338 182485.0323 33940.9244 68977.5748 22359.7725 54741.0223 54534.3708 35058.5903 49272.9167 197695836 ppx Phosphorus Polyphosphate degradation NA Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 49429.4096 97870.4552 8159.4148 19592.3161 20497.1697 8183.7426 218326.7272 11372.5477 28338.5329 42382.7415 41717.0097 314403.8942 17164.2166 73982.1214 40876.2464 62229.919 62229.919 76695.7216 27001.2651 13820.9731 36364.141 75168.9582 8698.5857 11109.3896 15853.873 24117.5296 55774.3268 55939.7197 61640.2955 38890.8599 12969.7855 13421.3409 27859.1643 13042.483 28380.7716 299115158 arsc Metal Homeostasis Arsenic Detoxification Ectocarpus siliculosus superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 10571.6001 9422.0911 5432.7686 2245.0336 2980.3802 2026.3546 3397.2223 6770.0788 87208.0913 5563.6223 4485.8865 2105.0875 2105.0875 2653.2431 6837.4697 5986.1292 3672.3633 5002.8565 5398.2568 7472.9886 2789.1172 9218.8988 3351.764 4510.1591 3308.4524 4174.0279 2976.0183 5003.6217 7482.9752 46850218 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 510336.8485 611917.382 780942.9146 869581.9762 198363.2885 180221.7864 311951.0488 553039.4903 220364.7345 453627.7527 308257.2291 362046.6651 9061362.5748 348131.672 577974.7601 1741525.2834 479693.0839 479693.0839 292165.1578 379699.0222 238043.716 691710.0109 424185.0401 504816.384 244146.5835 244879.2271 342641.2142 304400.955 679889.7935 488092.4572 431006.4662 385836.6732 269618.8881 314839.8825 232741.3767 831284.0459 352096392 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4985.5313 5317.6217 2921.1309 6752.6626 3283.7647 24116.0205 118591660 soxY Sulfur Sulfur Oxidation NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 20300.0513 5967.9979 7258.2845 9363.2777 3270.798 8052.4815 2669.2289 9827.8652 11603.4771 12844.26165 9630.0444 5624.58 24175.6765 8000.10355 5654.2027 24726.1624 9032.0522 7082.4116 10684.97925 14311.4318 4873.6549 96574.3033 50852.1998 16505.049 2941.5159 7790.25045 7806.1184 5393.0777 21952.0653 375258304 ppx Phosphorus Polyphosphate degradation NA Klebsiella oxytoca KCTC 1686 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 6838.8727 31525.3192 3064.8275 4989.9309 2953.612 10835.1213 11407.2879 3149.5599 89512.5364 5675.8251 7049.4273 6230.0393 2875.2629 2875.2629 3765.9681 12330.278 7886.3623 5949.5872 7003.0901 6927.3832 3337.4895 2331.6534 11484.2763 3254.2246 13575.1569 6835.2892 9228.1117 7835.3052 6698.5953 6958.8088 8537.9253 9160.0691 333737512 nifh Nitrogen Nitrogen fixation NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 25893.57 18547.0931 29792.8527 34335.2933 8797.128 28523.1364 10727.8103 23917.331 21563.3878 273788.9331 15438.9903 342653.5744 40936.66 24406.9493 22268.9519 14687.2698 14687.2698 15329.2754 28489.8829 22658.2947 49429.3954 28608.9916 38396.0393 16693.3328 15798.821 19704.1497 25326.1181 50620.8487 21400.3854 28908.1797 16096.5956 20450.0717 13403.4122 16027.0082 21039.639 225194046 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12895.7513 34140.5362 16448.9417 13914.2279 22500.6405 7956.0825 10129.8089 12538.5854 9922.6579 11625.589 7416.0421 192886.2882 14359.6507 9651.5162 11027.9368 7645.0702 7645.0702 10451.5614 19774.9583 10389.1059 10202.3269 15070.6717 17636.6793 8312.4689 7699.4362 15021.5778 9502.1464 23697.4915 11983.5143 16505.3592 12550.4839 9047.5553 7982.6732 6229.1789 21433.848 20977652 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7240.8936 6038.3176 3197.3611 4412.2304 2904.8457 3897.0314 2319.6493 98375.2478 4696.9257 4009.4245 5503.1978 6997.4737 4824.4299 5238.9939 24587.1563 6241.1547 2366.0043 3259.4011 9044.7848 2635.3314 10940.2672 5854.3667 9096.6886 3481.2916 4194.3604 4350.0688 3499.4996 5958.9307 285878261 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29858.2246 151181.1789 387989.3462 8701.8236 8301.6671 22284.7644 10369.8092 31534.401 17257.7367 17406.4624 414641.8516 50420.8371 1487186.9578 18814.9594 22886.3833 80407.5199 53252.3968 53252.3968 18531.3752 77465.7936 19508.6655 28946.6984 48871.0678 9213.4209 23170.8578 34436.2796 33489.5669 18758.8382 60820.8185 41650.311 85030.636 37146.4277 23462.8574 33485.0223 45380.7521 27649.322 325539471 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 23350.6787 34896.5133 34738.1537 7320.011 5904.9687 7842.4696 49438.9427 6325.2999 9259.271 13469.0594 173979.8851 9852.9532 11652.9477 12209.1859 17321.31 17321.31 4633.6389 57356.9776 12630.4632 43004.7235 26422.4053 18684.8293 6080.7894 7252.4132 15903.4965 9603.3429 27041.0271 25963.7733 17907.0754 8676.5263 8912.6234 8356.137 23512.4821 162543.1049 374610031 mer Metal Homeostasis Mercury Detoxification Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 7608.1203 14138.3042 167923.5625 10704.2369 2844.4339 12722.5433 8825.2914 6262.3113 279061.5197 5795.4663 15820.6731 21306.8153 14854.7818 14854.7818 9468.2917 5836.2117 28425.2706 7893.5114 9556.5618 11455.756 6847.7449 17025.2604 20120.4609 14428.6371 10588.3983 2461.2788 5813.6974 11750.621 3915.7791 73538849 pcag Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 13529.1714 161952.8292 2470.5313 2622.8768 7624.4648 3860.3435 3329.3373 3642.0391 10691.5247 3666.1773 5751.0212 4120.2859 3053.85 4049.265 2625.9852 23548.5322 2560.4405 50084612 one_ring_12diox Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7815.3408 6473.4227 13696.8146 2204.6566 2770.6986 4993.2763 4944.8437 3512.5167 4017.622 8219.6229 3367.7383 3367.7383 2603.2005 9626.1606 7897.2739 17053.9737 3770.2903 2272.5793 4522.7788 1987.3922 3283.5165 2871.575 162281279 fccab Sulfur Sulfide Oxidation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4746.0592 6833.7641 8631.2949 2447.2725 2419.3948 5380.6345 4281.2999 5789.8607 55297.831 4239.6751 2957.5092 6063.6962 4987.7257 4310.5629 7416.8685 8620.822 2879.1102 3724.4976 7187.9435 3099.7698 10721.4141 5543.339 2665.8597 4129.2938 2465.4375 9576.9283 28974732 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 373537.5868 24011.6813 218921.9702 160225.3884 276932.8831 132234.3138 225319.2119 154609.4508 480364.8116 178954.9574 164328.588 159939.7313 3836847.0134 181306.3669 221692.3935 559143.227 166615.2443 166615.2443 110127.8508 211157.455 153621.9405 351346.6493 302814.6277 305201.8175 95485.1932 160657.3379 144364.6721 468797.3926 460620.5238 234024.1225 118423.3018 144109.0066 146747.2457 143623.0255 239742.7077 195931897 catechol Organic Remediation Aromatics Other aromatics Williamsia muralis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Williamsiaceae;genus:Williamsia; 18454.3933 11067.2958 7337.3282 16150.9694 24821.0393 11324.0616 4081.5003 10308.0941 29689.5863 47469.7811 283117.3617 23116.8157 11498.4473 8318.6303 9156.9892 9156.9892 38176.2515 20974.0077 30019.6596 12848.3713 68343.4381 17251.2192 70785.34 7889.7438 18424.7833 14160.9383 37725.0127 36058.9542 32797.097 8343.3275 10810.4702 19392.6042 6802.8729 12609.4487 115399138 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 140046.4963 372104.9159 1618162.158 20666.4011 4927.2284 6440.9944 2466.4291 4455.5926 4375.9416 7863.7267 4318.7834 6135.0077 4693.0121 4693.0121 3178.4726 10255.3324 3863.0781 9668.9025 6870.0202 11629.0321 19412.2063 5028.5467 6218.4886 7683.2097 13534.5605 10590.498 8093.429 2907.869 4121.9121 7294.7569 5337.6556 22093.773 407201172 dehh109 Organic Remediation Chlorinated solvents NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 56582.2479 106991.3708 15129.8645 25385.4906 17244.4298 35770.5673 43837.8911 49715.0138 36388.9673 51066.071 36501.8766 734864.4808 33554.3317 25922.8089 48708.1594 74714.6557 74714.6557 33774.1947 98869.6702 46764.63 57522.2426 72732.1118 67436.9127 57225.6588 24661.9468 70585.7922 54318.1044 102717.0086 36005.6164 114124.4712 20873.0497 33376.3987 40553.3439 41545.4791 57128.17 196180908 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 9608.7577 5220.0308 8371.0344 4694.0505 6661.4684 4838.783 8087.8108 7926.1911 52818.786 146724.0536 10262.9646 8829.8664 7387.2671 3757.3018 3757.3018 8050.4874 12796.4945 9014.5396 14437.0855 11652.3136 7404.4777 5006.0151 5199.922 11847.5151 3784.3407 19681.9643 17008.2012 12463.832 5049.8325 6084.5939 7588.4407 5026.117 17209.55 363805672 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4278.6164 1736416.4795 9199.3579 4283.0186 3333.1628 2172.3821 6418.6921 3046.9445 100004.5621 4740.3832 4675.4071 5859.9463 2638.9938 2638.9938 3468.5876 9383.2606 7804.021 4736.9614 6067.6251 7179.4247 3301.0871 3030.4947 8120.1328 2577.9757 9902.3898 8232.4424 7461.4025 4392.6686 4002.60385 5569.2954 2255.02095 8710.0272 328809664 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 4353.9354 2698.8874 3208.8565 65860.8817 4067.9568 7230.5314 3710.4293 5997.7788 2303.8967 8387.1188 5509.2946 2089.8293 261407289 b_lactamase Virulence Antibiotic resistance Degradation Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 34334.8356 57368.9558 4795.1569 11010.5914 6308.7995 5746.8998 11229.5642 8848.8955 9845.3384 4697.7857 150502.6717 5485.0733 25142.0082 6373.4669 3726.8709 3726.8709 2859.6107 14853.2745 4442.6877 9720.202 7487.0012 12074.1778 4830.1877 9067.3359 15159.0873 7534.3016 221729.1359 4239.0968 9796.0808 8217.4679 11261.6028 79962.0412 18668.8858 34756.6176 158306174 cellobiase Carbon Cycling Carbon degradation Cellulose Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 47702.8587 25761.9595 5182.1256 6159.8706 20633.728 7895.2646 17998.5981 9911.8682 27474.1234 267117.98 8256.5316 13165.0741 9633.2686 9633.2686 4806.8001 24257.894 12253.244 6270.6013 8582.1695 10160.9816 14854.8492 4288.8039 58887.575 5471.5773 14308.3225 21797.8319 14212.8773 7627.5454 6971.9596 5258.4205 5189.444 16744.4348 340360147 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 4948.9047 6596.4941 8971.6363 9818.6548 1986.9727 8020.6038 18258.8996 3057.5173 106512.3091 5623.9101 6356.5702 4664.7718 4045.2429 4045.2429 5163.6539 13244.5041 9380.7866 5417.2757 8748.4247 6782.2729 3948.5293 5296.8187 11342.5486 3239.7965 19453.4124 11167.5456 16757.7462 6182.5149 6802.7983 8087.0273 3944.6896 6264.3068 308737275 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 5489.0843 8566.0661 5304.0803 2892.6237 2448.6317 4870.5975 7232.9812 10150.7429 119841.5726 14815.9009 8255.5272 8384.6772 15838.3712 15838.3712 4488.3093 12067.2404 10764.236 4353.3224 5298.8263 4128.4042 2295.534 6896.5553 8877.9685 12888.1459 18543.3441 11000.0381 8815.3777 3442.5333 4765.6999 13506.4831 3245.7817 133910685 nira Nitrogen Assimilatory N reduction NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 15098.2293 27749.2351 12330.1065 5391.4696 13247.7073 20711.3316 3813.1213 10138.339 4928.0595 47875.8586 43615.9471 471385.9088 12083.6807 56796.4896 35964.1847 25309.2582 25309.2582 4480.4946 14358.2415 8054.5637 8024.0726 63345.351 13393.4262 10128.3491 9346.4945 63034.9548 16529.5637 71113.8237 13000.0864 15349.3214 4523.0344 10823.2889 22589.3643 23026.8808 48470.8195 292604618 linb Organic Remediation Pesticides related compound NA Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 8396.6984 6509.5845 49263.6418 16954.2116 8890.0652 10515.751 84117.674 6827.6556 6827.6556 7270.1361 12329.4307 13532.9135 3333.792 4489.3486 15361.3536 96538.1885 69680.3905 5479.916 9674.1551 29353.0222 5796.2446 6073.3145 4515.1218 54778329 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 17003.3759 6605.5617 11210.1187 7988.4217 9289.549 91442.5264 24999.7789 34166.0266 15914.9193 96486.3742 12411.4731 35411.9288 17774.046 17774.046 8122.6993 19421.4822 12780.9336 8074.0161 27010.5309 8090.1074 10379.3652 13557.8371 5485.048 19666.7266 21232.3105 11954.6226 14574.3075 5490.4402 14477.6836 12047.4915 8560.8499 13506.2301 184199497 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 8691.6095 13288.4334 2818.6075 3126.5659 65296.1717 3517.746 5759.7942 11498.2972 7558.4819 5291.8574 7662.8769 9616.1123 6658.4918 2215.4849 7851.8287 5096.2893 5656.1262 1940.3257 2914.9629 3053.1067 2718.7656 5818.5079 386818439 tehb Metal Homeostasis Tellurium Detoxification Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 4012.5034 9815.2271 2446.0468 6346.727 2830.9624 2830.9624 3534.3305 4567.6482 4871.1647 353543577 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 7491.2944 7160.9927 6586.019 17925.0392 3545.6336 2336.2736 6549.1732 5682.9745 3467.4137 164499.6186 8008.3303 6910.5439 76178.218 3581.5588 3581.5588 4943.9418 25884.4692 6822.5757 8148.9861 11047.6277 4851.5633 4511.3467 4914.4578 13718.3835 11342.497 15099.7539 4399.0702 10477.1666 3662.1283 4704.6845 6848.2077 56903.912 11325.603 120593974 nitrilase Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 33629.2296 18130.0351 76553.1257 32474.7596 413704.8588 16102.4825 24474.8851 27511.1506 11860.4539 60030.446 222155.866 101739.2396 1950714.5723 46885.3717 38325.9399 64286.433 42633.865 42633.865 23035.8003 35740.9931 51612.8986 35555.9203 120395.8499 50716.3903 61930.7255 28204.8955 37397.1332 25042.9968 75107.5954 30735.0716 41662.1581 19854.0449 40402.2362 28344.5161 14018.5822 62591.1168 186473274 hbh Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5534.5292 3996.4333 2873.7029 3064.9331 1895.1228 4111.1918 4783.4515 9884.8258 115238.5573 5856.441 5094.2082 3446.171 3446.171 7422.7848 19988.5761 6504.7843 6095.4471 7280.8243 4771.65 2614.3917 2541.6385 7275.7563 4653.7758 40148.0197 17777.8502 9516.9394 3611.0738 5152.0232 3903.6975 2927.5724 6839.0888 332662245 amyA Carbon Cycling Carbon degradation Starch Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 16203.8994 88773.0311 9924.23 6646.0035 13064.2106 12233.218 6542.2134 14134.5008 12723.7301 9132.0212 553848.1167 15146.2129 19975.2469 20915.4753 10462.4684 10462.4684 12413.6722 21007.247 13421.7836 12607.148 25236.8114 13339.9443 18035.0863 9212.4218 25467.5094 24719.9417 52594.2094 19853.7993 29205.1176 7644.6929 18814.3237 17493.2172 11371.6679 17798.3918 7839576 linc Organic Remediation Pesticides related compound NA Amycolatopsis mediterranei superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 64018.2508 11982.3481 22595.6595 32604.7407 65073.2694 21655.3784 39444.4934 54379.8554 65740.0121 38119.6001 52844.6995 22747.049 2280633.9432 45870.0539 51481.728 96071.4187 33189.4599 33189.4599 32024.0271 64111.9385 42462.9622 72549.3238 51217.9235 50798.8571 320634.1432 37768.7513 65016.7397 27648.4713 111744.3729 50744.1072 60406.0333 30915.1722 35685.4503 49433.5885 45755.1711 61023.4277 336320808 exoglucanase Carbon Cycling Carbon degradation Cellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 15720.5732 10289.8239 15002.9771 56367.2009 9629.1663 691766.1961 14577.5432 3018.6837 8778.1534 10794.8675 7685.7687 191215.2532 16480.6916 15860.5712 19751.6246 11158.1787 11158.1787 5535.5567 18663.1029 11379.2863 5919.1799 29775.4777 8339.7908 6848.7434 8053.3043 16179.7632 4727.6398 22523.7475 13901.1794 21552.5602 7799.3048 14383.3225 10788.0244 6723.7968 69867.0963 188532464 cysJ Sulfur Reduction NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 12592.8489 265574.1686 68461.8887 14487.6763 11942.7405 7476.3919 84855.1653 30533.2789 14786.6718 33486.6961 46831.586 247296.2471 11855.1689 13229.9774 11551.6048 30002.3236 30002.3236 12716.5639 22570.5349 12967.2587 13916.4799 22874.9181 21698.3093 7038.3492 7215.8941 15341.7422 26072.0089 34478.4846 16052.5564 71912.2461 6806.0258 13571.0652 18440.1411 13044.7284 14682.3181 118468002 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 21283.8562 7198.4879 355385.7405 21535.7265 7112.0767 7693.4448 72224.7918 6783.5674 11463.842 16817.7079 68356.7172 7697.7745 6080.8161 7112.8501 21197.8057 21197.8057 5152.615 13355.3216 10495.3254 5318.1014 8434.7185 6886.3806 4259.0647 8332.8258 10452.7063 8927.4455 23169.052 7586.5677 12262.2389 17654.8698 14754.4212 22633.1537 8099.0295 7512.0869 27358234 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4547.1091 3685.159 2638.9079 2023.5278 2023.5278 2308.748 3114.0995 12642.4938 2083.7111 378827403 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 13465.4481 93623.7036 3567.4553 40109.1076 14873.352 14356.5638 5238.8848 24252.2757 12955.0647 28938.4994 1176585.5299 12844.2047 12535.3577 17525.4931 10668.7205 10668.7205 11704.7222 20441.074 16113.1941 16804.617 23198.0579 19167.049 9028.6946 18730.6595 22184.43 12961.6559 54651.068 15125.1272 30260.8902 8094.6793 77668.7665 25360.001 6485.1377 56420.5704 325292312 b_lactamase Virulence Antibiotic resistance Degradation Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 9082.0763 7495.9443 20100.3151 35434.6602 10870.7841 6772.1633 35985.0821 4183.1381 6928.3315 13837.8747 11374.4039 169114.4103 8313.8178 13273.0462 9414.2701 7471.6387 7471.6387 12435.0364 19110.0391 15605.6316 6176.3517 21352.7404 8793.9528 5125.9523 11636.339 27855.4914 8166.1024 66598.9958 23054.6024 21114.2202 8398.3633 11230.6276 12988.3899 7481.7852 11545.5554 261352763 ppx Phosphorus Polyphosphate degradation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 12897.388 1100091.3626 74217.4433 46435.8864 10961.7591 16178.0324 15058.1774 3511.3347 9100.1061 55708.16 7319.2156 278829.5427 14462.1609 13794.2664 14951.0261 9357.7776 9357.7776 9552.498 18041.7581 11613.4504 11481.1289 18245.0659 14691.3935 6646.0699 8535.9748 20394.2497 6562.3179 27902.5643 17735.7185 28757.0136 7615.6988 11432.669 8768.6455 10043.4085 17155.6388 197106349 gdh Nitrogen Ammonification NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 24115.7713 8544.0072 4587.5614 11896.4012 12915.6742 7275.4594 173756.7883 44264.0155 10165.4271 31511.2702 19290.4925 995408.882 26641.3844 26500.7667 19759.7743 18776.1901 18776.1901 30804.5357 56030.94 14074.0082 66184.3557 324332.0921 193976.7042 19549.6848 21202.0732 23338.0432 31968.284 63182.7231 28889.8249 30060.2417 32694.2784 30306.7324 33619.6642 19146.7606 28057.0523 111022620 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 10673.2054 6099.9933 13893.6656 3384.7289 19310.5399 2502.152 9768.0922 10942.6734 4109.9171 169326.0011 8100.4072 11269.4915 9855.599 7553.6194 7553.6194 4126.7301 13407.3874 11139.5317 50732.5111 17202.2433 5251.698 7625.633 13342.6495 4226.0181 24709.4254 6756.6585 10353.8446 9604.8891 18274.956 13830.5942 4714.502 5875.6769 153864882 napa Nitrogen Dissimilatory N reduction NA Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4680.0749 5390.2822 3550.6481 5354.2681 2408.1842 4706.3076 5012.9574 151523.7139 5267.3376 5576.5268 5270.4422 4303.7795 5544.6004 4402.4486 5794.7346 8360.0661 9783.2783 3933.1312 2564.2035 2649.922 12494.1487 2271.0715 4575.4003 392419847 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7535.9411 7511.2938 9304.1627 22934.1359 11515.1105 6863.1248 14457.2602 30935.4363 21692.1553 169290.1182 20267.8682 23699.8089 4352.7705 12121.2888 12121.2888 9096.0975 20983.6874 11227.3035 11921.7762 19803.5531 4835.0511 5648.9734 107864.754 18614.4744 8836.2019 29381.8834 28860.651 20735.527 7346.0444 34123.7166 12429.2388 13869.1231 29100.0929 119225914 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12391.7274 9321.5173 5623.9381 2742.3471 4494.8787 8027.1147 2903.9406 158990.1799 11951.6026 6865.0934 7469.9929 18303.1067 18303.1067 13353.0535 8114.3314 15109.8472 9952.8962 39617.781 4403.0401 5112.6787 9823.1191 3421.7181 13061.8736 21226.5209 11137.7079 4118.0008 6884.3993 4143.6051 2334.0292 7655.9145 291440392 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 6327.5098 5551.2813 15145.5065 478185.6395 9775.9014 18133.7712 167290.3845 3295.5845 174430.216 8440.5803 8452.1599 306773.6038 37383.5947 18401.1342 20445.1864 15741.759 15741.759 127597.593 20295.8989 7042.3444 10799.2863 16249.0585 7909.8696 8566.9547 12731.8244 17257.1364 7424.6828 36439.9988 38604.3982 13163.8719 16908.366 10961.089 32870.3569 113669.4603 327479479 gdh Nitrogen Ammonification NA Pseudomonas stutzeri DSM 4166 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 5753.6943 62076.7882 3456.2157 3485.1082 28537.84 5010.2678 81431.0647 4349.6896 3433.4685 5943.6347 3263.1096 3263.1096 2933.9644 6606.331 6430.99 3723.4974 16039.5196 4520.4675 2846.2322 5095.6659 9627.2603 5943.8571 7096.6646 3040.1336 4414.8174 38674622 onr Organic Remediation Others NA Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 112601.0705 12572.9283 7937.6956 9223.5969 2748.7216 7881.3596 6102.3678 8154.5575 13094.7324 12126.4486 177032.4557 20499.1858 12066.9776 16344.7522 8158.7319 8158.7319 11354.69 21154.0978 9934.6958 32230.156 15824.064 11156.3393 10637.5391 13053.5666 48857.3516 15608.9545 20330.5288 10024.9046 16412.0239 8039.9273 21908.4465 13963.7163 15065.9039 59524.9926 385274959 merb Metal Homeostasis Mercury Detoxification Pseudomonas sp. K-62 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 51335.5307 47130.6447 23664.0682 51017.2352 8417.0768 12941.9519 21307.7985 8536.9855 12338.9773 24265.9239 38106.9801 241413.9008 26652.7253 22848.181 25056.5739 17766.2758 17766.2758 11595.6549 29382.1426 20132.1434 30052.8349 33023.7611 31557.5801 15775.2152 19014.15 21645.576 14801.3804 77214.7114 32243.7372 41413.4571 18245.854 16464.8502 15477.5383 25433.774 53872.8724 306487981 nirs Nitrogen Denitrification NA uncultured organism 12261.7249 2251.939 22056.7567 3658.9043 9654.4543 4690.8926 5669.1074 5070.2346 211957307 soxY Sulfur Sulfur Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 4052.4209 23006.5883 2288.8455 6679.494 4546.4597 3515.728 5809.7944 3700.7041 5042.0587 6364.4646 5739.415 3132.0168 3132.0168 4147.0163 5900.2818 4005.3216 7925.0305 4793.715 5005.5701 3208.8062 5641.1855 3972.7864 8757.3835 4617.4287 6176.1395 2291.2485 4577.6428 8229.9837 3267.5905 6198.6982 422314279 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5306.4578 23578.0177 10808.3716 4151.8101 11606.5357 3582.6912 4525.1202 5590.6411 102073.5456 5041.6368 8512.3458 8004.178 5023.4793 5023.4793 40531.5241 7645.7634 5470.9267 9786.1767 8374.7449 2895.8176 5626.5552 13700.8892 16180.0798 13803.8426 7405.5564 8804.447 4097.9207 6040.242 4531.442 4826.0966 13069.6083 118618420 urec Nitrogen Ammonification NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 154938.8843 25272.4085 54422.5751 64973.2464 575641.0876 17195.2679 194869.7089 76630.3825 68216.0191 99449.2006 105317.312 139006.1696 2084893.0108 54628.3126 84633.5909 130357.4323 108991.6286 108991.6286 193900.5942 109706.1232 59621.5414 189397.0708 114795.962 407419.6971 74073.2203 95617.7423 87686.1009 85743.906 287410.729 187416.0896 127274.4992 67686.2638 97630.6557 98830.7838 75202.9959 535135.345 119497641 oxdb Organic Remediation Aromatics Nitoaromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 229505.5106 12587.2569 136901.874 107018.7792 31555.7589 14363.5186 110820.4432 87829.764 75717.4713 68569.7168 253245.9412 92700.24 5490681.9864 108974.2113 153329.1808 126395.2717 90886.3185 90886.3185 55418.8639 120983.0259 60042.4567 104005.8367 150575.578 477453.2247 62388.3005 58628.5951 105012.0628 92021.2949 227063.9898 58006.3687 85571.6744 51919.1992 61596.3596 87608.7112 52266.8173 91602.4358 72121359 phn Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 32526.6477 4657.9847 7329.2684 5560.0214 7054.3844 70803.9929 16022.8663 21489.1235 22868.1386 104035.8688 24089.8773 12660.9733 12089.3803 24900.1254 24900.1254 4880.9364 46758.94 10472.4569 17215.6744 7250.6328 6699.3666 7827.8412 7104.9121 152548.7167 16880.1452 24538.0336 16945.6471 13291.1135 9832.8423 18678.6429 6433.1205 26649.6173 21031.6045 387867361 phytase Phosphorus Phytic acid hydrolysis NA Edwardsiella tarda FL6-60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 30191.8806 15858.237 38263.605 22819.2372 6321.2155 16379.2874 13648.4511 25138.8009 14285.7811 20613.5608 11952.5799 315614.7999 27255.2511 21358.3501 20333.8374 13171.0521 13171.0521 11666.1196 21177.8373 18324.2211 18347.5246 27734.1194 23096.8766 11326.3636 10136.5338 26685.0012 10382.8286 40522.4414 16724.672 25872.9834 11250.3072 9844.6463 11459.4578 9469.4647 23197.7775 296179727 cutinase Carbon Cycling Carbon degradation Cutin Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 87824.4418 62664.8352 24042.2021 59840.3602 29092.2968 35586.7266 32187.6323 38082.2588 33284.9541 27850.43 37891.3088 650252.0192 36419.1234 42838.2044 29589.3304 31350.224 31350.224 23100.1252 46305.0932 45777.1028 37789.3913 52038.6365 34171.0478 15499.8395 21358.0245 39793.7264 19120.2132 78891.5247 58206.3097 45259.7615 41417.7042 23528.3824 25559.8631 17039.2591 40050.6992 88919941 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 13767.067 5786.7412 106526.2475 24624.4934 9801.3565 17680.6475 16208.359 9800.8601 13152.1996 28629.9682 169563.3673 13889.0506 22269.6565 26837.4455 25468.473 25468.473 19235.7062 39711.0982 24897.0276 18165.1339 16273.0461 19642.4524 8695.4727 16244.0239 46500.3407 15478.218 73766.2849 35285.759 76261.0732 15806.0115 15244.5211 25612.4529 10619.8327 15560.8617 343514637 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 63770.4086 2644.9365 3745.5772 6293.219 12959.9753 101127.4262 5321.9365 5033.555 8046.0707 3901.9253 3901.9253 10420.7072 308927.4122 63393.4324 4795.199 18631.8481 7450.6005 3995.7756 4950.918 9742.0508 2765.8237 10286.361 14770.7631 514254.2367 69853.9363 8537.4282 62706.4934 3700.6412 24226.5731 378727900 mer Metal Homeostasis Mercury Detoxification Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 6400.9402 6574.9598 2511.5829 2394.2754 5261.5588 5509.5563 2945.687 5174.2636 5112.0754 4411.8312 4411.8312 2549.7199 4712.8835 3293.8285 4034.0361 9614.1018 4823.4476 2443.239 2667.8961 7174.5489 3177.9739 2823.3451 3756.9309 5880.8026 29652464 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 324923.893 244767.3455 146261.1481 395584.7193 917047.4818 57419.034 215536.2101 782369.6015 227921.8779 370502.9306 350089.9356 299410.4928 7385618.215 769535.3107 493095.5619 855332.1708 296489.1481 296489.1481 243529.2942 661929.5059 288728.5615 142075.0832 298336.9499 496078.4885 163273.1663 257578.855 233501.3932 221600.5775 1065411.2273 376003.8073 380690.7455 213699.6069 222713.3803 240641.7149 192966.0157 542659.5279 56785448 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 103975.0839 28213.5949 7429.83 3552.4704 6355.283 5036.6578 5508.4805 6657.288 98536.5644 6156.7706 9289.3499 2425.1122 2425.1122 4738.8139 14212.193 7099.9612 19411.6216 4498.8456 2977.2031 2368.4418 19162.4005 3700.1267 13966.6121 6552.1494 10338.1419 2972.8135 4237.5939 9248.2736 5587.7029 22899.4062 373850890 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 57373.7142 64706.6208 53571.2057 260774.8781 71291.0894 62924.4758 106907.1563 335245.7609 51831.5009 74584.9629 56673.6164 1515273.8852 86388.7105 187695.3202 62559.9947 42061.4946 42061.4946 59785.3754 119471.3937 67196.0459 278275.4215 73002.5603 79288.3489 73270.2961 47300.1416 72257.9618 85795.3941 257894.656 62805.6018 257450.4833 51045.5133 62332.9568 111916.407 58028.8872 97314.6262 268609194 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 9960.4441 114653.9271 15466.0009 197689.4524 6921.8797 76402.7763 10571.6782 11288.5337 10268.5685 22062.1655 156923.2517 8790.3515 8574.7938 5203.2502 12241.2256 12241.2256 5481.4651 17731.5996 10980.2811 17086.6868 12642.0212 13062.1413 13977.1675 6815.508 8015.3894 5501.2902 76787.4655 9582.7892 8046.7263 4068.5368 10265.7877 18699.3695 4648.1441 63395.9926 260651759 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 12255.2389 5722.2923 52868.643 12492.0043 14338.1686 8756.3375 9641.2385 5409.4954 11493.0642 13640.3522 17361.9295 3498811.6518 18505.7606 16610.0364 12428.1067 21269.1257 21269.1257 9655.0208 23978.5691 17420.2837 16995.4318 23629.6133 12528.1363 8095.1602 12491.8921 27155.3478 8860.1239 28115.8575 20892.1778 24857.2912 8435.3702 10710.6637 12354.0046 7110.8267 11590.7251 223587078 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 27369.7712 898245.7617 47053.499 66168.0201 13029.6464 9361.1272 27304.5355 9469.899 18043.2328 28274.4921 15943.7841 330993.4915 19515.8731 50645.7764 36792.3222 20798.9078 20798.9078 11760.1569 42400.3458 24995.5755 25484.2367 26993.4535 19170.6186 8324.7925 21220.6231 25704.8114 51994.7928 65646.7244 43841.5356 36505.5833 19857.8363 51197.3768 22911.5194 32760.6679 15703.2541 154244878 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 51135.2722 19390.0887 25790.2862 76827.1447 24979.6383 13744.0924 27573.5054 19511.3941 25099.56 24587.671 63996.7469 22361.8615 807277.9895 41983.0164 38383.6672 26740.4946 24440.5098 24440.5098 27150.1761 49181.4034 26979.6133 201451.0816 105075.1679 119384.4257 26847.2579 17948.7039 38220.2175 19154.5551 71423.9384 30641.0316 52822.5042 57821.9469 29734.1054 23862.3238 23533.0108 71919.5715 144581924 actin_Viridiplantae Other Phylogenetic NA Ostreococcus lucimarinus CCE9901 NA 20616.4718 15572.1009 10173.6183 5995.8897 8307.7948 16616.6893 13219.066 23991.5489 25655.394 145493.0353 16341.8296 26834.6095 22115.3094 14083.8686 14083.8686 4414.4597 27242.851 8249.242 12752.831 30573.9382 11350.4097 6310.4515 11335.8338 9745.7914 20501.8933 46921.8823 13324.7532 17397.3898 8531.0331 15904.7189 16968.3818 8600.0864 104205.5119 89513040 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4567.9269 6384.1039 12836.4672 7057.4282 4111.0451 10983.6627 9367.8653 3839857.1673 8678.8291 6232.2799 153752.0917 70866.4362 70866.4362 5521.1281 11683.0956 7718.4296 9205.0184 6764.8343 9754.6547 2882.7112 6269.5243 11076.8107 6397.3492 10657.9653 21310.9299 15036.3304 3380.5757 5179.9268 6000.2256 4382.1874 8113.8493 383774141 atzd Organic Remediation Herbicides related compound NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13592.5666 5767.9357 5415.7424 15096.8676 7997.5124 18716.4711 6089.5766 5617.2193 14108.0098 12498.4898 127992.8033 8873.2632 16921.2337 12479.6999 9959.4684 9959.4684 6373.7705 43886.2285 14764.7344 8839.1263 19929.201 11420.5973 10942.2225 11877.2288 16865.3263 9567.3995 31510.3638 9695.5255 16130.5631 7775.9757 7282.3826 13551.9067 6042.7703 20544.3838 154159591 oxdb Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 51705.141 6169.1112 5342.9897 8051.0375 55762.387 2703.8814 5115.1126 3490.6992 3354.8178 3172.686 4462.0387 103486508 cellobiase Carbon Cycling Carbon degradation Cellulose Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 12182.6189 3873.2536 388063662 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 00703C2mash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 12739.4589 19856.1698 12903.6813 5805.3467 6928.1149 5439.0633 7007.1756 7554.1748 8947.7841 107814.5068 6180.5017 32522.3606 6591.5045 6028.2763 6028.2763 3696.1891 13633.1407 8383.1373 8815.0643 4294.5518 6798.5137 5734.0524 8627.3515 5920.345 14376.7525 10851.8262 9600.3688 3564.1024 11148.2722 6024.4304 4612.0281 18699.1262 86611381 vana Carbon Cycling Carbon degradation Vanillin/Lignin Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 171007.6765 21397.2115 228442.7682 146948.7669 149980.4523 44760.2635 156766.7013 200825.7811 58530.93 139379.6433 157094.7582 260971.2506 4278521.2059 220824.2158 137983.3656 374459.1965 201162.3844 201162.3844 115042.6832 141633.6085 71547.6376 130832.54 173610.3329 135205.3907 124284.1713 94006.1974 123824.5381 77560.9925 218912.0818 185673.7198 144346.8024 95324.2288 119172.6431 143667.0492 77965.736 131601.5247 29605259 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 31862.2578 20797.707 34837.5504 18845.092 40979.0497 18037.0203 45975.2432 32022.4698 13634.7161 19119.4965 27042.2147 55162.6804 687279.7541 27525.2544 50176.9423 67382.155 30126.7935 30126.7935 14544.5177 41881.2944 31224.9166 33502.5792 45101.8748 46738.2896 28901.0552 23485.7563 58075.1317 19555.0693 78389.0793 58245.2597 50321.0965 22368.0415 41392.6721 36351.1077 19535.6897 42461.0402 121610344 arylest Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 14217.1304 6555.1447 7326.029 20642.8481 12182.9502 55653.0868 14532.8977 6496.8703 26467.7353 9931.106 110065.2513 141353.9406 21759.8588 19715.2825 5338.1837 5338.1837 4675.584 45710.7434 11105.9984 27400.9028 13120.2815 8979.2432 5680.3957 10406.174 11097.527 21540.4168 28424.0969 9332.8431 14567.7138 91312.9873 8237.8936 12516.5238 20125.9882 12189.0009 72122661 nbac Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 11156.2358 15314.9657 36930.9736 14560.9621 3564.3756 9127.7199 5527.4762 8511.795 7580.882 339398.2272 10233.1302 13517.7595 16076.1197 10438.8795 10438.8795 6399.1978 9308.9873 12847.6126 5466.9674 9140.258 9845.0287 8175.3948 9577.8312 21180.4599 6110.5391 44090.5067 34421.9447 40287.8297 9231.3042 9863.1621 9404.863 4775.3097 7168.1137 219677225 linb Organic Remediation Pesticides related compound NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6299.9339 4211.3484 2948.4533 4802.1429 4294.742 6377.4503 4523.0712 112889.2158 3936.7737 11840.8711 5448.1878 4053.6426 4053.6426 6574.6996 15114.5813 7566.9172 11228.5787 12978.1611 3918.0641 8710.1947 5789.2359 11273.4701 6646.6812 14510.0833 11979.5488 8954.1759 4071.6281 9557.0734 7397.778 6433.5123 9072.0664 343924236 amyA Carbon Cycling Carbon degradation Starch Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 32364.7871 12596.1489 30938.9482 41346.5855 7300.3691 16271.8082 28366.8082 32042.6259 18151.1769 26032.8179 16542.7562 450973.7047 30511.3369 40988.5612 18816.0643 19578.7581 19578.7581 12639.258 35497.5407 29737.6239 28514.288 75455.3577 33723.2214 46063.6847 31103.5719 57893.342 37775.5873 64496.9714 36924.8562 45807.7985 28275.754 31517.4104 33680.9296 45621.3673 27771.8953 17385522 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13398.8781 22582.2435 5543.1285 4748.2627 5513.128 9452.0216 6533.859 9404.8998 5381.7272 254654.3537 8733.0396 12890.9703 6284.224 3727.3632 3727.3632 5403.4158 17480.2869 8130.4866 21230.595 20023.139 7493.6676 5148.9457 5831.6033 17054.8546 6659.8315 23947.6488 13455.6348 11539.9145 6198.6802 9892.8685 14346.5981 37672.8654 15073.5979 19070157 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4158.4593 6868.2074 3119.7225 2164.1914 11180.8771 69021.8556 29690.481 7299.8152 4811.2485 1915.5498 1915.5498 5988.0782 4043.5605 9173.8262 4604.7435 3148.0929 2622.0214 6900.5419 4583.4489 4498.5029 5266.8732 3734.9788 4505.8245 5578.2755 8254.9172 6216.5604 336460700 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. paratuberculosis S397 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 892601.6152 32854.2687 9310.6756 32630.5037 4051.7299 21031.1811 7502.8573 7840.8928 10032.3745 13362.906 174993.5502 32533.3061 9887.041 9426.5459 16341.0773 16341.0773 8031.7945 13815.5385 13916.8875 39466.8075 10111.9744 5480.1217 4636.9001 14908.1418 10772.9321 29316.9782 131716.2002 18484.8054 13544.286 9154.2164 10951.033 13658.1865 9477.8205 8540.2863 157406237 soxY Sulfur Sulfur Oxidation NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 447815.0533 378814.6002 286026.9847 497403.7663 264555.0124 1491986.0939 160030.6406 222255.0914 132210.4147 188044.8018 249273.1642 209921.3806 5859927.5517 288342.8186 530355.3211 447914.6188 332819.9858 332819.9858 174851.3737 223386.9294 183159.8557 282629.0148 542307.9293 151456.369 143066.2298 153581.2566 227539.4936 327624.6076 443708.2228 517564.6728 231001.2972 115239.5521 183411.5444 202558.6029 180683.2094 341536.4368 151562113 tktA Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 15005.8207 21916.4604 33770.6044 78577.6371 15781.7745 24995.1797 17933.7012 14569.0102 10084.5431 13327.6905 56454.9721 23465.979 469162.837 22501.2714 21251.3875 12989.1376 81756.1515 81756.1515 13336.1326 30181.8731 22079.2016 14726.5854 245983.3319 19769.9447 11420.9753 14061.5452 32040.9016 22350.411 59343.6042 44087.7901 27493.9116 15108.5218 29361.7964 17700.172 13583.0625 305826.3525 323134638 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 87640.5542 13006.5841 88689.7751 27627.2493 336448.085 14532.4412 147634.0841 44161.0189 241545.2965 58467.432 71931.1896 116954.3021 1274759.8285 90257.4971 111701.4891 81640.604 106403.687 106403.687 54502.4792 74570.5639 52042.5268 269914.8772 147174.7377 74930.9257 34991.5252 61695.8701 140127.6285 59718.1451 194338.9295 223399.9699 107963.4195 36264.5857 42122.5539 88705.9295 54631.5122 78414.9473 62120275 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. SH22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 52304.8464 19191.0567 18332.226 33080.0488 101717.0561 9503.762 18552.686 35496.6093 304621.8059 38452.9071 47223.4517 39022.2582 723754.7853 39277.591 50030.9392 165847.1512 101531.8054 101531.8054 17487.6927 71647.2635 37569.5932 31479.1263 130757.6683 25983.7554 38712.8168 37363.8626 58348.2833 308312.6799 109830.8851 60737.2918 73461.2027 26668.0601 43117.8932 52490.8093 22424.8927 38619.797 307551517 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 60185.3784 8654.0103 9443.4096 19575.9022 7833.6041 8959.5675 66998.8624 8912.4155 77722.7096 19545.3367 17405.1866 216727.5751 16951.3217 25267.0901 48423.5143 30994.8469 30994.8469 11779.8352 60413.1523 23526.3239 141728.1691 23984.371 35571.087 27252.4765 16225.237 29152.935 26530.4582 187879.0888 48931.8368 26864.4282 8125.5518 38837.3177 49496.8689 15145.6747 36501.3367 319414004 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 57597.7082 5491.3188 6434.6245 19426.3674 4308.6588 26130.026 5669.3677 17870.016 32383.1268 24844.0325 169283.25 30929.4675 43604.4897 23950.5548 18397.0126 18397.0126 17060.7265 34196.5396 10334.5147 25101.7565 72353.2196 15901.3426 8409.0864 17839.0405 43891.5702 53971.7969 65515.5934 20566.4284 30808.5226 11900.7509 11935.5587 41240.2464 10119.1561 17955.1294 392844320 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4644.2233 27749.2514 3310.6763 3352.7107 2672.4516 320150381 catechol_b Organic Remediation Aromatics Other aromatics Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 11187.5915 10696.4441 12742.0189 8849.407 6407.4061 6478.3651 12959.7172 23403.5982 8269.5306 235164.112 13565.5471 9145.2869 14315.8321 4880.6639 4880.6639 9337.4332 21990.2902 12381.4717 9791.0985 14181.8448 13309.3316 20660.4198 5783.2527 14928.426 6323.8657 21795.8267 8814.9064 15096.9779 5839.497 11268.0553 9614.0181 6318.9021 13698.0095 334860863 ppx Phosphorus Polyphosphate degradation NA Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 991613.2505 1568794.8163 45062.1181 93673.8254 388350.144 39932.0554 40578.1833 80551.3964 28448.2655 36826.3341 89722.0406 57788.5644 30831.0764 718650.8015 352018.1172 76717.4251 145823.8969 145823.8969 45028.7087 57896.6286 337311.0833 201455.5052 325353.3463 270263.1492 38251.8349 43215.1281 110006.1862 31060.6801 140530.3853 105847.7121 84200.3007 67318.6197 53465.0015 83411.547 20761.4598 91966.7478 184200251 catechol Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 42733.438 2658402.2877 14854.0009 82593.8232 13147.9387 5227.7274 96088.0148 5099.5436 5638.8863 103444.046 20864.3659 1003560.8186 49119.6599 9678.5799 10396.233 19225.1038 19225.1038 36664.5797 114498.1616 25031.4244 8305.1159 15374.3323 11904.1738 28780.5705 10580.2799 29343.8498 13046.2609 141204.3387 73742.6692 32119.6607 17147.5437 19801.8749 69320.1084 86522.1283 61444.7047 355335081 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 26936.0939 63961.2745 66390.2323 56347.0424 21144.8755 23554.7526 25810.2684 17038.6782 34252.7485 24277.5339 15348.5861 1230803.876 29969.3969 29105.5475 40539.3736 35516.4054 35516.4054 42233.8785 24786.3228 18014.1765 28062.5345 35041.9682 27388.6181 28903.1187 18659.1487 39257.8495 22396.8889 69362.6583 42547.1903 52164.3632 15631.2579 17871.6883 48940.8085 13639.3113 36011.4231 291435683 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 173577.6275 6108.7584 3135.264 8589.0917 3237.5581 97056.7545 12575.1914 6753.3543 2986.4141 2986.4141 3355.3821 6173.1564 13782.9519 5695.5683 2995.8883 6058.4936 9826.6385 6968.0721 2755.0335 4705.7964 2651.3898 7534.6371 154362248 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 47937.7511 202099.6112 8747.8613 12843.5962 10914.8448 7882.1662 4736.4149 12339.4344 14638.1524 7489.7764 120143.4641 35858.2735 9003.4457 5822.5375 6510.9524 6510.9524 7427.8224 13706.2994 13917.0253 11226.1736 17939.9777 26265.4165 4593.1121 5198.783 14259.8894 7089.0845 28095.4658 23250.3038 16831.0066 11906.0849 20359.6255 10015.5443 7764.5002 12041.3911 89055455 arsc Metal Homeostasis Arsenic Detoxification Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 32068.9764 86713.1744 5739.2644 12299.1682 9090.5312 10810.5182 8055.5762 6497.0757 9910.6573 5065.8377 160502.3792 12418.4936 82097.9859 7149.6367 5382.7138 5382.7138 9466.0501 13041.8641 15337.6762 11476.8958 293441.107 8324.8379 4722.4245 7124.4007 15068.998 9650.3631 25699.6765 12502.9693 16927.681 7228.4545 9548.8447 9124.7652 3887.9196 12610.9241 335335199 rubisco Carbon Cycling Carbon fixation Calvin cycle Verrucomicrobia bacterium 4ac superkingdom:Bacteria;phylum:Verrucomicrobia; 23473.0128 27018.1306 23128.0436 25690.355 12202.1651 4221.8544 42785.6419 14413.4659 10095.0144 14645.8717 11971.9587 239750.4832 14499.2481 19188.057 15634.4335 13571.8308 13571.8308 11518.4508 81534.4827 10937.4944 46872.8009 15913.1948 21068.4602 8709.4344 11646.6549 21037.8095 7981.4117 39424.4942 14220.4882 17877.6764 10160.5716 10781.475 18918.0588 8414.5196 20951.6521 219868932 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 8666.863 981032.1786 15044.5118 3288.8441 6041.0441 16198.4766 3814.9305 3814.9305 5001.9219 5095.3533 5651.9201 5665.9872 3843.5592 4599.3801 5928.6535 64827.9025 4883.4238 3435.5897 9334.1908 288856756 chrr Metal Homeostasis Chromium Detoxification Legionella longbeachae NSW150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 15575.6533 6137.3088 12111.1671 18282.5356 5970.7648 10363.4937 7282.2712 14498.669 13083.5951 16088.0806 6484.9422 276506.9156 26522.458 17898.3686 14243.8369 5561.5306 5561.5306 12413.0157 34857.003 25312.2452 17166.5872 33325.7617 42155.6811 13001.0821 12093.1693 16591.5122 9464.7697 36639.4456 6389.0676 22147.5911 18872.0038 16902.7283 14489.8882 6620.6209 25194.5105 121495568 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 130897.9223 69693.2194 36796.1713 441752.7775 7219.4237 327741.0123 101141.7591 32268.1477 56234.5235 125114.3739 54164.607 3532834.6615 66794.9055 68915.4251 24872.8194 50544.4077 50544.4077 78968.4942 59839.6768 57219.1567 52599.4314 83060.9254 76525.5679 27063.2662 150870.4532 46551.1671 94682.2391 87998.5923 19952.3691 43650.3485 24584.1513 56205.854 105858.7288 40639.9951 32285.6632 169292262 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Clostridium spiroforme DSM 1552 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Clostridium] spiroforme; 4077.2313 2159.4406 2915.7015 3593.2447 4532.4273 4723.727 70854.911 4651.1717 5536.4465 3417.5185 10394.7521 6088.6358 38033.3582 8029.4946 5145.1018 2501.3859 6300.9171 3475.2859 10060.688 7174.3786 3005.2069 3152.8213 6082.1597 2358.538 6750.4841 328545695 phdci Organic Remediation Aromatics Polycyclic aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 287127.7846 38865.6162 175448.9458 364034.0706 168125.4051 198661.5286 266692.9097 304662.2385 292261.0511 207840.4471 263353.7537 238385.3426 5035141.2668 221966.331 714038.1146 1157445.1796 335872.2685 335872.2685 122570.138 223636.2172 104246.3828 570871.1273 239315.717 269553.2927 252887.1454 157301.5592 207118.1105 154543.5613 397997.7278 456715.1793 252004.5472 152160.9679 119073.8965 204830.522 114719.8903 348191.0676 226243303 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 165760.0523 22837.6395 63972.6792 38792.3124 121719.9916 17918.4361 81819.5508 90691.2744 85428.0121 79441.4743 112926.3403 154245.8948 2687522.7878 295717.7961 124764.9036 140907.3842 108441.3334 108441.3334 55771.276 175917.8102 81970.5063 105774.7679 261288.028 151395.8868 104261.6566 120624.1677 93070.0078 64732.0706 224689.5682 109507.4287 123997.206 50842.5563 90575.4505 135210.8098 84844.1419 196457.4401 296255413 urec Nitrogen Ammonification NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 19145.2776 12946.2488 9499.8711 9980.3687 8534.524 611667.5249 36231.7713 42128.9331 8456.2477 30199.9017 30237.7496 4628678.1348 39372.8144 19804.7419 7514.9081 75788.8318 75788.8318 6220.9735 13266.1142 17441.0261 8404.384 12044.5401 14564.1841 11924.8734 21528.3826 10677.1297 42365.2133 61232.636 23074.3123 30438.3109 19551.5596 19463.9024 63002.4942 15267.3117 7007.0126 198256358 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 17268.5016 12432.8386 12368.5533 18264.0959 24476.805 8692.4809 23818.792 7085.013 17164.6511 24946.6962 10734.9638 463196.3547 21610.9597 19390.6927 26425.0552 25343.0438 25343.0438 12748.5698 31403.7151 24248.9319 20828.0029 30532.756 29341.3835 10688.1596 14155.0534 43317.9656 14956.124 58637.5213 12908.42 27472.2766 10024.6091 12962.4565 17996.7366 12960.264 34660.472 4204385 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 12091.0341 20432.1378 5281.6316 5239.8264 8490.2179 5832.1352 4827.0847 4536.7894 8299.922 25738.0118 9368.6029 542168.3181 12851.4298 23876.3615 6246.2209 7051.267 7051.267 14818.9978 19973.5893 7720.6261 8873.5916 11649.0321 14996.7552 9171.7695 8037.6165 6870.0434 9423.7488 31850.062 9319.8326 13447.1679 2366.8082 9590.9183 10337.4923 7314.6151 7259.2258 283950501 xylj Organic Remediation Aromatics BTEX and related aromatics Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 11432.1953 9574.6964 4444.8413 37051.9853 230184.9039 7321.4326 7541.3753 2911.3283 15975.9592 94428.42 9752.6629 344724.0762 15424.3376 20699.1143 61767.9126 21962.2292 21962.2292 12900.9143 24997.8564 8616.145 7411.9568 24792.1261 14919.6264 12267.7072 10430.839 10276.4881 11930.8114 29793.2021 18741.0361 17097.4417 10050.1795 25314.4806 12328.0649 11352.9228 17991.09 300390289 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7066.6576 7322.1293 4476.484 109086.9652 19707.7217 16645.8486 15391.9992 4968.8464 200248.6651 4325.8609 20644.2873 16767.3959 16612.0613 16612.0613 12387.8071 12108.1334 14156.9863 10842.8479 15995.1963 7258.5305 4872.5987 9094.375 8798.1018 138647.0458 192296.901 18894.7307 21452.5096 26991.0077 14779.2872 11926.9497 5340.1424 10752.9979 152143665 catechol Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12698.3275 4949.0718 10985.8548 10311.07 11250.5415 2195.6707 2802.5598 105957.9922 9402.8479 91284.9154 6088.8908 9992.3132 6410.2429 3371.5936 3371.5936 10281.5042 81297.5827 6934.7816 7171.38 23113.6029 4829.9528 6861.4639 8239.3146 8380.9919 46509.3074 25636.2573 15863.2111 14862.6694 6265.1624 35329.2086 10378.1208 10825.308 105145.409 170740957 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 101203.8574 9518.5871 15157.6605 48476.1262 8074.3021 12532.0584 19586.3371 21828.4998 8044.0255 658054.9452 12776.1318 10551.8603 20699.8677 27807.2009 27807.2009 10368.5499 40878.6047 14580.3443 14180.2916 18250.9509 83846.8547 5936.9468 8353.6514 22180.087 33128.6168 73866.1042 45689.4723 37945.4117 9745.3281 27071.1696 11504.5722 13326.3469 56289.4341 118424457 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 73718.4944 36146.9996 14013.1422 13115.1318 21414.9799 28635.7665 131026.9613 45773.7397 49232.3833 36505.8326 1460606.7313 45688.356 25392.006 224428.918 160158.0587 160158.0587 21600.2221 55428.8942 23847.1095 79424.9533 78337.5378 54969.9983 67137.9656 39189.2331 47003.7234 31347.2916 115767.4806 58302.4223 47690.7504 33004.1108 72067.4157 105663.8396 33353.0928 58190.1417 325696022 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK160 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 5572.7527 10515.9743 3574.7019 5065.2299 4080.2876 5604.7627 4931.2192 97055.7566 5417.4315 6003.5419 7467.1814 7467.1814 4090.7101 10610.8662 5745.4425 7290.3872 8134.1793 8705.0596 3403.0923 2817.88035 7343.4792 4004.8094 11164.34295 6250.4333 11386.9533 3052.7199 4292.9219 4598.3494 3308.3304 9708.9441 348690556 rgl Carbon Cycling Carbon degradation Pectin Phytophthora sojae superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 4719.8371 16023.0554 4186.7326 3311.9193 4717.8585 5610.341 7165.1953 11256.5878 3750.9422 1171487.7101 8738.2657 6092.4979 2549.8691 2549.8691 17584.4104 7042.8425 54978.9064 9877.3575 5637.7217 4502.8473 4815.866 9358.6958 4838.8335 12170.0591 12939.2086 8967.1288 5391.9583 3776.4306 7351.304 5594.5015 11419.2452 332285303 tktA Carbon Cycling Carbon fixation Calvin cycle Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 5267.409 3138.8063 6779.5578 30684.7277 30684.7277 3681.5991 7265.5899 3291.601 389715875 amyA Carbon Cycling Carbon degradation Starch Microcystis aeruginosa PCC 9717 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 16428.3161 18684.1778 4007.5992 10099.7586 18263.0947 19603.8623 7010.7811 74676.8622 21820.2162 19777.6354 383515.2875 16069.2353 34747.5469 29696.2745 14732.8217 14732.8217 12857.977 33899.577 22093.2277 18707.3882 64917.6682 20253.1242 31363.3719 10690.5466 17182.7126 22527.1692 43164.0598 31134.8844 25496.7839 13665.4017 24725.2131 21796.6698 20368.2607 19638.149 33386644 glx Carbon Cycling Carbon degradation Lignin Ustilago maydis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 10669.3902 13244.552 7226.6542 9431.0069 60421.0661 8214.6362 14885.2416 4854.7842 211168.4917 8651.5223 11600.7325 5172.121 5376.8662 5376.8662 7979.6777 22100.4102 12788.3828 12720.168 12667.5752 18051.8207 11535.1407 5112.4195 15253.713 6732.1957 24872.8047 13437.5999 20418.0755 7036.3957 10631.5522 10832.0817 10597.894 13387.8324 226095137 chitinase Carbon Cycling Carbon degradation Chitin Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 12923.0045 5894.569 59624.5034 3966.9918 38125.1226 5968.5332 13123.2777 8507.5753 228828.3179 10380.1714 15141.4543 51925.4035 7727.1797 7727.1797 9365.1008 33394.1615 18672.7359 7357.2875 83394.2212 7357.5995 4490.5826 6998.3228 28136.2795 13247.9407 234757.7614 14275.2584 34841.4882 74780.1211 22146.7106 10517.3841 4447.2483 58926.4678 46205560 ara Carbon Cycling Carbon degradation Hemicellulose Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 305029.6657 24845.2614 104070.4409 146218.4212 112562.2056 17987.904 81133.046 293829.8772 201677.7408 92041.0956 115841.4695 152948.132 1997727.6267 105046.9828 176947.9645 535136.6345 173930.8187 173930.8187 82033.513 138022.9504 68716.5376 230562.1621 224457.1765 73137.475 142053.5673 49448.3842 94046.0794 96213.8649 327881.7917 195973.2094 176969.713 144454.3686 120021.7373 93164.1548 96442.4036 295982.0511 108462165 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 12561.4712 10555.3813 13566.2661 18527.2618 4411.5412 10309.2741 14161.724 21902.0344 13503.6729 17725.5265 6595.867 360673.6732 17228.5169 12908.3834 10192.5531 8998.7394 8998.7394 9551.435 29455.9407 16310.2979 13837.5674 18144.5276 15341.8858 7790.7423 8828.2226 19596.9132 9961.5586 38602.2666 15792.6267 24520.7981 9053.1247 10566.8392 10339.3272 9930.9941 20858.8654 332671931 rgl Carbon Cycling Carbon degradation Pectin Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 63956.585 9254.8441 12029.4307 37230.6639 14328.706 17863.878 60774.7123 16083.2953 35420.1401 43725.4787 51880.1944 759683.8387 27405.5687 61367.2112 45766.4747 102344.6259 102344.6259 76723.0666 52850.8427 32538.3832 72207.8729 102178.167 39101.1789 72813.5913 38419.5828 52769.7095 27950.9082 73600.9213 77613.3965 96618.5311 45478.7133 102042.4375 47272.4895 61338.5858 36278.8068 335433571 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 5177.8198 14754.413 3879.2754 5012.5959 3115.0935 5903.4143 6429.7176 5366.9678 254918.2324 7986.8542 7835.4814 6009.9889 4723.4623 4723.4623 10318.287 10692.9566 8587.1442 6062.842 5157.2792 6015.051 4206.68 9421.8763 14525.5661 7213.7836 26428.2618 15315.2164 24236.3399 4981.4285 10794.7841 10588.4509 4037.6601 10409.2436 88926806 nifh Nitrogen Nitrogen fixation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 4081.4193 8222.3223 4572.5743 3043.1662 4378.5098 3760.1457 3438.1474 63463.5229 4846.646 24922.4852 2867.5456 2867.5456 2982.4199 7957.7108 4391.6217 8754.0516 6071.9435 3385.7842 7856.1735 2326.445 5016.4263 5250.2134 3971.2085 4218.8706 5934.7954 3318.667 5923.1139 145558157 soxY Sulfur Sulfur Oxidation NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 5853.5995 4642.7935 4499.2072 2984.4526 2689.3001 5801.8437 5522.818 4252.794 86784.6544 4940.3736 4951.0299 3352.2242 3352.2242 2563.8273 8677.6307 8251.1892 4784.6096 8213.6308 5601.8419 3549.7653 2733.9894 8715.4715 2634.7435 15432.366 7008.8953 2799.3332 4473.3785 5392.4661 3208.8824 11801.28 323312081 amyA Carbon Cycling Carbon degradation Starch Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 35254.7027 16359.8813 21465.7381 29156.3376 33620.9123 11575.6784 49605.1447 46718.9474 20380.0648 18726.2119 25665.8019 19598.4764 463722.9514 31021.0755 29393.7592 40011.0142 23268.0013 23268.0013 34053.7644 38158.6172 21647.2178 23204.9782 33882.4397 28835.6869 14812.005 16270.3923 33343.3345 14473.0991 41815.8588 16478.725 24310.4447 12915.5492 17876.9932 18130.6892 10391.8786 37664.4918 297561212 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 17836.0129 8900.9355 19202.8931 12498.9378 13431.7672 6320.4259 1875.043 4099.8973 5844.9334 4967.9324 123381.3896 9494.7777 7034.6105 7973.2346 37703.2886 37703.2886 4596.2383 8826.8276 8357.7994 5018.9622 6907.9709 6745.6987 65017.2235 3374.4899 13536.0339 3744.3034 14267.1303 7590.2669 11012.0366 6203.0663 4834.0763 7755.9726 3186.7869 5802.8946 333920002 badh Organic Remediation Aromatics Other aromatics Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 5642.1598 41095.5566 7078.3348 1849.1539 7156.0318 3576.4364 7234.1299 6979.3553 9529.9805 374549.5614 20902.2392 10388.2246 4896.3373 4505.2679 4505.2679 3894.0199 77846.5032 8204.4187 5057.8026 42518.622 7864.9218 9096.1348 10690.8468 10077.1631 19693.0667 11853.9201 16775.0781 3923.764 7042.133 6880.3438 11219.7068 5619.3057 150964443 pcpe Organic Remediation Herbicides related compound NA Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 29721.0249 6216.1258 10921.7675 13187.5715 4819.6791 24153.3095 9695.2327 6564.4768 11739.7476 22089.7459 13258.3674 89781.2057 14057.4625 42520.7887 41621.1319 15031.6367 15031.6367 7685.2496 32966.8948 8582.1867 26434.4759 18704.6833 10584.965 7801.8311 6814.0906 17992.535 14851.3924 46419.2997 21855.229 15411.7033 6190.9633 17268.2641 54448.6313 7526.4972 13296.6242 302867463 amyA Carbon Cycling Carbon degradation Starch Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 37274.0128 37139.2141 13374.077 53459.977 13710.4326 8727.9499 50399.5895 8311.2835 15987.2065 33192.5301 34816.5377 798964.5713 146070.5352 24264.8455 80526.4599 106845.6878 106845.6878 18127.2035 46903.2784 23638.151 16576.2147 43291.8375 34429.326 24700.0296 34526.878 47348.8328 28039.0336 85951.9634 28929.632 43238.7074 44452.2825 44133.4592 34293.4859 23796.932 21931.161 333391666 pme Carbon Cycling Carbon degradation Pectin Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 5713.2188 3024.4944 15951.8192 4724.2815 2917.2383 71523.1832 3918.7412 5419.4457 3787.7398 3787.7398 3397.8872 9126.9661 5909.7147 3804.8729 19659.721 5275.7515 4200.175 10226.1673 7335.5586 2635.585 11775.3019 8581.0875 6727.2414 5056.6524 3460.3188 3592.6413 10236.6758 7656.929 242211440 glucoamylase Carbon Cycling Carbon degradation Starch Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 8483.0412 15908.5505 9911.74 20966.5527 12132.429 4950.4695 4941.1024 10632.9711 6343.61955 6763.6744 122127.2728 7753.64215 8791.6531 49499.0766 11127.3161 11127.3161 7233.7898 12306.68795 8897.00025 8846.8654 4916.1731 27827.8925 8193.6522 42685.7712 6735.0723 16857.0485 13447.1371 13722.1969 5558.2146 3575.66815 5408.3992 156112050 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 5694.3405 50261.9334 3958.4809 9475.901 23331.0597 13847.3674 75468.832 6301.9572 4286.7774 9408.1132 9408.1132 9404.5518 5555.6467 15447.8142 9648.1426 5482.0255 4128.3052 5649.4945 2946.7274 20684.4786 12010.7284 9362.25 4100.8135 17882.6953 4288.5583 2417.5512 11091.7731 11876710 xylanase Carbon Cycling Carbon degradation Hemicellulose Coniothyrium minitans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;genus:Coniothyrium; 13568.5964 8502.8648 6134.2416 25418.378 65211.1072 7085.8611 5670.1466 13628.1596 26086.0584 9587.0922 254970.8625 13245.7 19129.6891 11631.6511 7668.1867 7668.1867 8186.3971 23476.0375 17085.7534 13680.5464 14705.655 18318.9248 5361.1978 8649.495 17745.1048 7761.4995 30273.5707 18768.9096 24480.8707 6769.9376 12587.1176 12827.2799 7183.8743 19341.1587 206559705 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 28260.5973 5931.641 61584.344 12488.5625 38461.1716 5766.2478 38687.8095 20919.826 11966.7454 24141.776 13085.3297 1010449.336 261165.5743 13025.8154 127519.68 62549.7189 62549.7189 7445.6294 30746.5507 10912.7518 19840.7458 16975.7774 10142.9633 9138.2332 17250.3052 21374.9259 26414.5003 47195.393 11168.794 26438.7342 6807.9383 91498.3506 38725.9035 13233.7093 8386.8586 1143575 metc Metal Homeostasis Mercury Detoxification Shewanella putrefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 4681.7631 392413681 cmua Organic Remediation Chlorinated solvents NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 15636.2099 7035.7208 7346.6455 16190.4958 4131.6714 8820.413 8748.4123 7090.1793 11082.1113 9304.4917 603887.4843 9716.5019 8919.5954 11518.3201 16659.0323 16659.0323 13029.0099 24704.825 17355.6681 11916.6664 17719.7645 14433.629 7022.1389 10159.8763 11947.874 6572.0387 29147.8257 18918.4352 20850.4055 6005.0797 8651.9904 15148.1207 12840.9506 14709.3612 359400768 bphc Organic Remediation Aromatics Polycyclic aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 17094.1028 7336.2451 23185.5116 14950.2518 12038.0407 10210.8475 11960.7876 16202.3253 14192.405 12641.5111 235513.7533 16035.0846 13473.6032 10825.1047 7271.1533 7271.1533 10242.892 23715.9724 13339.8052 14662.1799 15873.6266 18296.4393 7552.872 7176.6131 16620.7246 11427.9294 26257.5149 21613.3652 18669.1136 10997.2303 10589.5745 11001.3603 7423.4934 22345.2685 255010023 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7176.4361 52363.0275 6770.667 14937.8494 1924.5393 4382.9658 17098.204 4380.8391 344932.8494 13633.8672 13042.0384 14206.657 13427.8812 13427.8812 6197.6513 51133.0838 17046.6283 4978.5489 11542.8028 6464.75 4198.8891 16034.5859 30179.8176 6876.7623 31054.8999 17541.6489 34060.5409 5958.6259 9278.1316 19152.5371 6030.4495 7907.1363 61678850 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas viridiflava superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 776090.8625 56004.2352 413563.1884 310852.3931 568919.6248 264107.7089 268241.0946 240421.8522 859118.0648 265746.3129 336705.8043 255036.6816 4773172.1177 300435.7693 591665.5309 588172.7913 407078.3217 407078.3217 183605.5465 317301.5678 185631.196 727861.1651 463122.1023 601020.7114 316456.2052 176709.0547 349535.488 219022.4468 887359.1541 753014.7401 272749.1431 238504.9622 188558.4332 269531.7361 165064.4489 1659973.5061 211961049 nosz Nitrogen Denitrification NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9787.3833 7736.2254 15603.6536 15290.2096 27288.4992 12113.9571 17596.5494 4580.721 13157.6037 30807.7114 19682.1231 266294.7302 24972.7714 18784.8487 18516.2768 16724.7018 16724.7018 6188.5811 32642.2264 17251.1635 13063.3893 35849.7206 19204.7899 5293.9225 12077.6757 24746.9449 19438.7021 27755.3702 42357.8434 23104.333 16513.6116 12007.9347 19189.9528 22034.7064 11331.5418 15675255 cda Carbon Cycling Carbon degradation Starch Streptococcus pyogenes M1 GAS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 7517.5893 8736.4107 8623.0913 7675.7847 4352.7039 3176.3533 5000.4661 9679.3741 2474.9073 135696.087 8347.0732 9172.0575 5186.5419 2809.7987 2809.7987 4954.4055 12498.363 14084.4043 5997.1303 8421.685 5876.7086 2745.3307 3862.1397 10822.2674 3024.5562 15315.5602 5412.1672 9102.0869 3959.4403 5995.1842 4038.5597 4010.4225 9562.9427 26278916 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18867.4563 5250.5394 13258.5938 28033.7903 12764.0951 6459.7616 10947.058 6096.8602 9144.8489 12303.5066 10007.5941 2248866.0149 11321.1585 8738.5088 14189.5597 10999.2248 10999.2248 10746.5462 21321.2909 11753.6464 16097.0201 20915.6679 10657.462 6292.1464 9189.7721 19823.7616 14415.245 26773.1586 13816.5481 18344.3278 7431.4653 12071.377 11497.6864 22705.3448 72322.7621 159044908 urec Nitrogen Ammonification NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7110.5317 65688.4246 16066.4665 7743.8764 4791.9235 6690.0813 3772.5891 3968.5952 7336.1508 5758.0058 3789.5271 132331.1357 6772.458 6075.8754 3999.2766 8041.8738 8041.8738 3132.2322 16119.4334 8571.3909 5855.1911 4412.1395 10571.9584 2761.7727 4511.2699 18400.4837 5000.5846 14218.0193 12862.4995 24094.2349 12590.1423 11094.195 4280.4568 3056.7499 6012.7412 367038109 ara Carbon Cycling Carbon degradation Hemicellulose Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 1150093.4377 199610.9679 896115.7509 1946118.8926 1236488.0283 1158122.8725 560356.0341 736258.1882 824183.3523 613195.9805 773761.1843 438059.9709 18178996.3084 931507.8003 818291.1977 1849074.0936 650629.2485 650629.2485 519647.5606 802291.6528 558730.6953 1012251.5522 1043631.9337 1285572.1892 496397.9652 473191.4334 804634.1271 331408.3253 1093566.2984 852280.0483 909343.6986 467619.6169 431166.7059 455150.6421 398225.2989 1486064.1725 302549256 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 139080.6898 55571.6319 412796.645 54306.1919 173907.3583 22642.496 197255.4208 281132.738 257744.7135 188143.4374 92214.6967 161724.5741 3158607.8021 94124.5302 322686.5669 350473.2235 183823.7512 183823.7512 128435.5743 183004.5427 317695.2603 128185.868 197753.4538 259632.7254 59753.2146 62050.8816 94220.9266 95934.4568 214075.855 120039.4579 130301.3869 96812.8059 107876.624 161048.3209 103621.3361 215979.1776 261358044 nitrate_reductase Nitrogen N Assimilation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 911329.8136 6177.1734 22265.1542 9931.2087 7192.3641 9095.5946 3997.0968 24584.3109 5715.8102 486071.5773 27805.0421 21103.3505 12108.9746 9302.6185 9302.6185 8346.1606 17106.0905 28787.0471 92445.1451 15915.5895 12097.0013 5439.9414 4385.9327 8588.647 12047.4707 23563.369 47411.5601 13377.8269 4292.4185 9004.716 15099.0753 7586.9059 13379.0079 333483584 scnabc Organic Remediation Others NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 8020.0215 5395.3138 18006.3457 549510.4002 7388.8668 5318.9855 5011.6598 5342.503 15308.1619 4409.0206 4199.5872 8661.7259 4048.6803 4220.7871 5731.3778 12288.9474 7382.9135 9294.7199 14513.9141 7592.3239 5171.447 5851.8685 10592.8298 3680.1587 14422.1694 12759.0665 11928.6045 4135.9719 6813.6132 9032.445 3751.0588 12671.0302 317494196 amyA Carbon Cycling Carbon degradation Starch Enterobacteriaceae bacterium 9_2_54FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 9277.4153 22414.6978 4848.6115 9073.1545 3930.7048 3334.8168 3452.9618 4867.705 9635.5203 3197.1317 372434.5918 6105.5451 5189.8336 6335.0813 2883.1159 2883.1159 3836.3615 18177.272 10660.9629 19872.2189 7044.3833 7657.7743 53732.5695 4673.2345 16668.6709 3305.276 18420.4025 8068.3593 13210.4687 3337.3267 5129.0063 13333.928 5970.0329 13133.442 294472473 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 38748.9544 52895.2294 29241.6938 193220.8499 12429.3073 45419.225 63198.1591 57462.3909 35744.9667 53574.2656 48021.6519 784152.3803 68995.8574 37598.9875 21723.381 27307.1703 27307.1703 42990.0767 126999.649 48441.7039 32592.4922 90104.8021 36656.2721 24715.3781 18702.3101 36483.4529 41383.7525 58623.1515 37170.2621 57490.4175 30842.4003 28002.5138 62305.7105 46507.5704 59639.7782 129279052 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 111304.8228 14863.4391 21637.8694 21634.1839 18778.0376 12461.7009 15092.1767 14192.746 13090.1294 7207.724 12862.0265 17170.0031 420357.6587 13069.4255 22466.3414 18222.9792 11633.33 11633.33 12432.9753 20089.3907 20181.875 29253.0201 22380.0832 17460.3108 7007.5114 16610.0654 31419.6238 14013.0537 31221.8715 47425.2679 23058.3342 8939.8639 11049.7215 19668.578 9488.0371 21114.9004 299766338 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 13729.2669 2341255.8125 9961.7517 929571.7106 4829.1627 19600.9062 3257.3388 23875.0722 15537.4956 14300.8606 142802.5493 13240.0995 9574.0302 8213.4915 8507.8521 8507.8521 156429.5949 192210.2046 14131.6481 5754.0123 6507.1996 40624.6638 42331.5518 17799.4443 11630.177 18648.0752 75688.1434 99783.3725 33201.5773 20368.8745 43615.3662 23662.1755 6346.9462 6211.6675 374985816 amyA Carbon Cycling Carbon degradation Starch Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 302021.1785 30558.8261 9793.5497 25428.5738 5585.4978 29675.0256 25514.4852 19342.307 12985.3271 95146.7353 23980.9887 962681.0651 24327.8618 104032.3804 100111.9682 28999.6748 28999.6748 30500.4834 85542.5453 30582.1394 204362.1601 170463.9634 67742.7565 24706.4042 27634.7936 28091.2541 15391.1959 85623.7025 110345.9335 34143.4978 23263.6065 47310.9397 41298.7703 24645.0729 42736.7776 302513434 ppk Phosphorus Polyphosphate synthesis NA Veillonella atypica ACS-049-V-Sch6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella atypica; 22819.4192 11280.8961 18173.6263 16373.9658 15475.8229 11654.3678 7932.7075 20779.7951 24957.9657 15344.4409 426925.6738 18588.1519 17181.1977 20831.1734 1868.0868 1868.0868 12562.6237 22907.8202 15898.7249 13523.0745 20986.3733 19594.7731 9701.1835 7836.09 23834.0902 8950.5612 38224.602 22975.427 28890.1931 12108.6406 9849.163 10409.8603 8117.4531 26925.554 177841042 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 33511.2349 16362.3452 12350.5615 7253.8882 31769.317 9880.2842 20717.5112 8166.1778 16217.5771 16752.0324 152399.8989 7577.4407 251761.0088 6170.6823 7516.2229 7516.2229 20251.7802 23985.416 16554.1497 14277.2852 38121.8586 13440.4105 12212.9655 26202.9859 22303.4763 27982.3959 45306.4558 30587.6574 21001.1803 9451.752 15286.8581 30497.4661 18547.9857 14998.0058 422314453 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21173.1135 7931.6632 9088.6233 10104.984 11178.4421 6241.9523 8707.5847 14883.8217 11554.193 18853.5832 239288.421 15514.6068 12305.9873 10536.7252 22242.152 22242.152 7860.5063 20631.584 11062.838 26667.7217 47509.0348 11349.4521 11423.3827 17463.142 11874.9006 22405.1222 35635.4113 8016.4865 13924.0604 21550.8263 13598.6088 10099.226 8628.8712 13832.5485 188028898 nasa Nitrogen Assimilatory N reduction NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 32180.0571 9483.4914 8057.6947 19999.9226 18962.5566 14577.7474 13129.1902 14459.4603 24647.4552 8578827.5806 10483.1807 56297.5803 10483.8186 16572.9923 16572.9923 10572.9236 57348.7342 13476.7593 11681.466 23210.0714 10491.0846 9923.0226 10866.4303 54175.4785 37840.6925 33379.4109 6459.6441 16355.9551 35724.5071 20366.1422 15085.8079 66900.9651 12491.0918 225163375 rgh Carbon Cycling Carbon degradation Pectin Diplosphaera colitermitum TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 5057.8398 5624.1414 2400.1718 3542.5961 4329.2965 3774.0958 2315.6042 3978.3378 5800.8472 2265.9546 2265.9546 2631.3781 6320.893 4154.6962 3695.6242 14914.7983 4913.7604 2474.5814 2819.7656 5594.2541 2119.0684 2527.8482 4094.7472 2024.0223 292655857 amyA Carbon Cycling Carbon degradation Starch Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 186069.125 49349.0128 86318.3903 871172.6064 79941.3286 12647.4624 108458.1013 493124.8454 65426.3618 150014.0123 100665.9516 124398.8374 3296045.997 208084.102 140095.0553 396329.3894 225654.8289 225654.8289 61323.3906 199629.5655 127216.7131 143670.5645 185866.3618 167548.4625 76467.2847 97031.1576 109998.5412 75929.5344 289632.5733 70937.0175 174166.9123 128177.1886 85977.7099 88619.7582 91334.7709 283153.7967 359823458 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7989.5539 6116.1624 3238.5247 4693.0645 4263.9484 3905.9283 4805.6237 4805.6237 3108.1722 7605.1628 4786.0031 5299.6508 3773.607 39794.9261 8003.3426 8747.232 2425.9932 9745.0768 4961.6559 2549.3348 8201.8222 371486302 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 224203.8647 90210.3787 159563.6742 200184.0396 131133.1029 514535.1668 363926.6198 233879.9657 185892.0003 327482.0592 141876.6629 207856.3161 8246151.7959 325043.7566 296060.6961 280807.9725 205461.7588 205461.7588 175161.7781 438904.2706 150851.7008 443764.1242 505598.9403 337574.5514 192385.2994 232680.8759 226567.8979 151879.9228 829961.9915 312483.2725 234942.5387 395361.1115 172883.9577 165906.4901 175466.0757 428923.8296 259502115 badh Organic Remediation Aromatics Other aromatics Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 45691.1141 44568.2001 41825.5806 39706.0069 11011.889 95540.713 24793.4978 44685.8118 41687.2397 36848.1703 55038.1811 37352.7162 744191.6283 28941.4151 39429.9227 88330.4691 93014.8917 93014.8917 39287.4521 97025.8121 25588.408 63767.5229 124831.0487 42268.1185 43167.9829 23157.6078 26983.2931 37613.9272 91815.2455 37902.5291 57555.8012 20844.7221 49952.9023 81598.8404 35035.6117 117447.1347 150034100 nifh Nitrogen Nitrogen fixation NA Methanococcus maripaludis C7 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 32704.9804 11540.5789 22227.7986 12736.7084 9269.077 35064.6692 9080.3809 15122.1126 16091.8599 11239.579 323932.9761 17301.3276 14639.8394 12109.5742 7365.3678 7365.3678 11545.0072 25260.3371 19344.2382 18566.298 23823.0948 22390.7727 13853.8602 11239.6306 20396.2554 22437.9077 34414.3749 23742.5559 23111.6711 8202.0393 11160.477 12740.6702 8631.58 31162.0788 6491822 mer Metal Homeostasis Mercury Detoxification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 187749.5421 73982.6002 146180.9166 151646.4089 770433.1609 61424.8186 452449.5378 117320.6261 148395.0217 180917.6742 241205.416 174542.5677 2572827.639 266892.9469 150593.9354 103304.57 144328.143 144328.143 127931.1758 156051.6278 81904.0613 168157.5894 291661.355 159354.2997 101238.2939 117047.036 97784.9022 119732.5989 395857.4714 149143.1549 197727.5326 126941.7403 68336.5058 290365.9365 126224.4153 193331.1647 377813106 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14161.5192 9754.6142 4325.2698 34421.0436 8328.7049 12967.4277 10402.5601 11338.8735 4295.2519 8737.493 6489.6267 147880.6304 11443.5049 7582.5713 6172.2734 15026.4408 15026.4408 14268.9764 13178.9152 10335.9892 5676.585 10589.5957 2756.2555 65570.9505 58344.0629 3579.0827 24866.112 210177.009 14542.5873 10279.8452 60078.5201 5889.1415 2986.9515 17855.6302 351731529 chitinase Carbon Cycling Carbon degradation Chitin Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 76140.7748 58167.1085 30756.3276 63892.8546 8958.8941 33213.0079 44306.1006 37168.0751 32673.0885 66844.7215 66083.4311 817409.1303 110459.6169 50089.744 99494.1647 88433.166 88433.166 39342.9935 80690.709 36880.5461 79951.5421 82762.3694 97686.1864 33056.6408 37637.9548 50905.4415 37639.1872 67194.8244 39232.8502 80291.3874 25974.8869 46795.8342 57771.963 24436.3735 97187.7532 336301569 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 19958.8261 43301.4703 6933.8726 12045.5773 6080.6723 10538.4136 53408.0986 20044.418 29240.2894 16330.3108 335973.8147 22700.5743 45743.4349 14349.7885 13965.1705 13965.1705 9434.0311 42691.122 13717.4004 23745.7576 109978.9321 61939.8917 26733.0878 20646.3547 26788.6004 15601.5685 41475.9446 32797.6711 26608.8209 8562.2391 13534.3882 17870.6733 19798.8497 14622.5949 240171046 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 44795.1432 6985.7905 12978.9537 12605.2073 10759.4629 11321.3323 9368.788 15494.9541 99673.9121 144362.7127 15208.749 18238.9233 19103.0232 27260.1994 27260.1994 6283.9042 25247.2336 15579.877 18711.8803 16581.4737 8178.5604 12543.58 19068.1846 27579.0846 11157.8829 31172.5766 49304.8355 35423.2607 11051.6693 20237.2622 16167.5617 16459.5347 10100.8282 347519579 dsra Sulfur sulfite reduction NA Desulfovibrio sp. A2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9873.8873 10929.8572 409214.5354 7055.372 68439.0229 3596.8987 7397.2157 2324.3999 5777.9701 10884.0445 10573.5395 233988.3027 5781.7464 10231.3916 33983.5562 13525.9204 13525.9204 13595.414 17472.2412 9315.7285 17044.295 16253.3426 14697.243 7453.2964 10327.7903 9481.4303 11029.9412 40935.7318 7974.961 10980.5597 3487.318 7449.3883 6678.6147 8589.3848 6753.0755 408483214 cmci Organic Remediation Aromatics Other aromatics Pseudomonas sp. R81 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4548.9439 12490.9023 75904.3839 2324.0783 4299.4114 5841.051 7757.8141 5970.93 3635.9162 115870.6101 6381.1466 5238.5523 9737.4182 9737.4182 2641.9274 4967.7345 5949.0579 4642.3055 5443.0429 3863.7398 2215.2903 3470.3484 6701.8013 3010.1589 11479.1307 4522.4513 7559.9009 3619.187 6055.3334 7433.2934 3194.8882 4901.0405 380734665 badh Organic Remediation Aromatics Other aromatics Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 35689.9357 31143.9584 6922.6397 23299.9194 7353.8364 33840.1521 167585.8415 9176.8548 12507.8857 15386.4447 170173.207 31241.6505 25078.4408 24497.4736 15135.5406 15135.5406 31170.9451 20817.3237 10214.5299 117469.3132 33824.473 17525.1815 14195.9124 9531.1049 30670.4754 10847.2166 64668.0191 14006.8937 17094.4249 5518.0997 27989.8617 18194.8652 6753.2914 15156.6228 225194050 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6800.1618 59293.3555 6056.739 2575.8663 3550.1678 6908.2757 14965.9442 4540.175 74509.575 7461.5067 27038.4528 5400.1988 5218.0729 5218.0729 2836.3467 8275.2134 10684.2971 9524.7908 15842.851 3629.0667 5194.7773 21594.8802 3537.7316 30663.1794 8972.3918 11331.7048 5436.0546 4115.8328 15579.001 4636.554 313847547 aps_apra Sulfur adenylylsulfate reductase NA Gloverina rectangularis gill endosymbiont superkingdom:Bacteria; 7145.455 19074.3024 4581.792 3459.4821 5349.779 4155.971 63048.7972 7773.7488 674841.2886 4942.6459 2759.9797 2759.9797 3171.4026 13113.5023 6196.7341 5724.694 9826.6435 15382.3271 3848.4741 29013.0475 7427.9435 7196.2996 3894.4788 3534.7364 2904.4556 359838875 pcpb Organic Remediation Herbicides related compound NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 139479.6632 10114.4498 20706.9821 26574.6268 15167.6892 35181.5964 14533.7217 4932.7175 9498.12 18338.0096 11258.4139 145795.4589 21378.0085 24063.2456 14148.5698 12532.5393 12532.5393 10549.2261 21886.2533 13442.6958 5943.9166 6247.3673 64059.8032 6755.5864 7845.9177 40076.4365 10316.5391 29453.7678 21719.4702 21206.9762 11014.8097 13034.949 10074.3382 9131.8069 19072.8458 310823461 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 21044.6771 11706.2118 6071.1745 16892.1586 28731.7547 6519.7177 9581.6451 13592.1195 4531.9542 11353.9244 11233.5309 7507.4768 241532.9506 11281.0834 14120.955 18822.906 7541.1461 7541.1461 9496.5593 17849.8615 11315.5176 303299.6251 11694.0036 9862.7611 7664.5996 9715.3337 107112.4182 8129.0154 26918.2213 12037.8833 21953.626 6898.7711 7866.4436 10715.396 7091.8664 17507.6076 784897 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus pneumoniae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 8118.1265 222354015 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 41630.1365 18049.8766 26730.3975 57169.902 7533.3624 87350.6131 29882.1629 28520.3695 30564.0491 32325.6719 34346.5875 3394959.9822 32595.0323 34746.5808 45876.5412 27817.6958 27817.6958 36950.5135 34869.8038 28192.7598 24244.2068 40897.8499 42334.5219 39128.2803 23313.241 68601.8426 54658.948 96745.3619 40794.9199 189794.7566 55173.4411 84561.1622 33873.3341 38908.8743 61144.1876 392848215 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6613.8284 46278.4567 4620.2623 7788.5283 6341.8344 3812.0171 124679.2491 4501.6162 8514.4835 9544.3868 3697.3984 3697.3984 3895.1024 14178.5541 49378.6882 15017.5584 9397.1351 6364.9698 3940.0424 8418.8993 2927.4658 10435.3386 11377.0262 8207.6652 2931.1868 9748.9604 11864.6658 3521.3703 17339.3302 222543132 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 8925.4477 13797.6775 5838.7826 85123.2271 11128.5597 12036.8191 6949.3016 16427.2085 16427.2085 3771.0024 19273.1806 5724.6452 4271.9068 3283.5324 8188.2949 7943.2668 7811.8538 2245.4356 4381.9617 3930.5199 219682687 ppk Phosphorus Polyphosphate synthesis NA Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 6259.6358 5595.314 8467.5679 3289.961 11650.8322 3972.0938 6146.8093 21622.3501 2920.7614 134745.9718 10560.565 7121.6507 3243.5619 3243.5619 11039.463 10147.1665 8948.3325 43063.3474 10633.0457 11323.5596 3978.6888 6749.013 14151.7784 3830.464 14853.9203 10150.0423 14764.2096 4475.4935 5106.1426 7648.9507 4153.5759 7909.19 159105229 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 8436.5 9530.2664 9813.4608 36973.6565 6887.2989 16278.9573 18477.7058 6137.3279 7718.0365 12060.0595 9555.4822 220138.8648 10536.128 16255.1128 9720.8359 7252.38 7252.38 5442.2964 15035.7774 10646.6259 6279.3385 73473.8186 14532.6682 8420.9314 6114.9433 15736.2428 7543.6008 22536.0666 13473.0068 18124.922 7833.1447 10989.6556 8487.4388 5061.6052 10540.0343 306517686 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15786.6331 3895.5865 11239.6083 12627.9375 5354.1089 6814.9185 14789.9028 5740.7538 26471.2378 6758.2135 67396.1852 7490.18 8393.1246 17780.1677 10530.5048 10530.5048 3769.895 9236.2023 6444.9102 14870.6269 27970.7568 7551.2972 4834.0054 10148.6095 14552.9664 4475.9547 35304.942 15608.7223 40134.7017 5463.031 7920.0887 34712.26 7126.5161 16274.677 163811721 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9458.878 8170.4694 8256.6722 3836.5567 2512.8518 5549.918 6589.8193 2857.8731 294834.1007 7943.7563 5834.9969 6097.2398 4172.5077 4172.5077 20697.3029 16199.2631 6434.0362 6621.7592 3835.0571 10639.9363 3764.934 13287.7995 11921.3607 6133.6745 2740.0742 7948.7422 6184.3991 8543.6178 6072.7395 338782389 endoglucanase Carbon Cycling Carbon degradation Cellulose Achromobacter xylosoxidans AXX-A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 14975.2545 7478.1063 12625.0357 31183.7825 9115.8244 23763.2273 10823.6963 10281.3897 10653.8378 9977.8066 19502.731 203892.6452 16574.9281 11881.9912 16990.6973 12370.3993 12370.3993 6541.5935 25518.4679 12698.1728 12197.987 8881.7035 11395.3988 6985.0618 8320.192 18993.4902 6111.8058 29493.9049 20896.405 24191.8705 9999.0005 19628.6023 11762.3404 6274.235 13190.7576 422314473 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 118944.3376 52401.0814 45769.6877 187737.977 32310.1698 28199.7694 33072.7917 34072.6195 97979.2663 63652.4832 73628.2769 1234729.3958 123950.9275 229554.3302 79295.3455 270796.2693 270796.2693 31221.3592 102180.2343 98632.4138 72301.0477 102600.4315 62765.6146 41468.0666 38913.404 59441.3124 46557.343 212167.095 88238.6359 127606.2041 65659.39 52541.9725 54082.3566 40280.6008 142079.5157 407012 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Lachancea cidri superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 10463.2497 8824.5759 5503.1928 7585.0008 6883.8767 7920.1871 8164.005 12351.6259 6551.4841 223395.8485 12018.4728 10063.0958 8989.3531 6542.5949 6542.5949 6715.7738 17057.6275 11778.6491 90661.4877 16084.3568 12977.8408 5496.9414 6663.1376 15745.025 6390.9695 25058.7108 14541.4443 15010.4798 8380.9704 10052.8643 8320.3062 45902.3552 30900.5975 307727787 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 32848.3593 81681.0293 12490.6079 13948.1416 11484.1353 30075.6156 19230.7921 9822.4888 10632.8169 19977.5403 15414.1447 316887.9882 13576.1851 22885.1823 1515280.8641 45303.9785 45303.9785 11139.3448 49866.4863 17014.1174 17111.3463 41927.0704 43010.9845 10212.779 19918.056 27220.391 59161.0735 47187.3261 17968.813 34148.5323 14104.054 22380.12 17798.7316 18716.5185 17702.1925 256380160 dehh Organic Remediation Chlorinated solvents NA Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 145653.34 19001.3286 55079.7847 56068.3753 17694.5934 58025.0544 35390.055 15200.8548 61183.5287 44198.2429 28107.2174 824341.245 79337.0228 44015.9343 54656.6452 60318.0042 60318.0042 52920.941 62956.9978 32337.0595 61959.9137 64440.7361 47028.5287 41881.082 22006.1636 47005.869 20635.8541 58250.1 46446.5358 43432.3377 22269.7856 26192.9867 51025.0185 17378.28 38578.6101 209485869 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 200725.6522 9814.2815 10123.3222 12197.8674 31580.9569 13056.4293 26816.7153 22448.8696 11545.0328 125338.4278 21972.3626 1096417.291 223320.0379 20218.0229 32881.8347 22623.6388 22623.6388 13671.0384 28313.949 39330.9324 23669.5817 24085.3181 12232.4551 17228.929 22108.5715 17270.7084 14638.7133 33717.2142 28403.55 23847.3123 15104.7095 25663.9758 22595.3698 21925.9463 189458.8341 780711 nifh Nitrogen Nitrogen fixation NA unidentified marine eubacterium superkingdom:Bacteria; 27276.7193 26642.2174 8529.4455 5284.7692 7512.781 7466.1646 2658.7658 12435.1047 8737.9646 14373.4461 155523.5678 11735.678 72817.4305 12171.3579 12526.5471 12526.5471 9522.5178 15264.5355 10699.2541 9744.2235 9307.4803 11581.5506 6987.019 12198.5967 20997.2325 8878.1672 28326.1923 16711.2809 13642.9553 6828.3181 8804.1091 7572.0428 7977.6834 87297.3221 147829482 phn Organic Remediation Herbicides related compound NA Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 49071.4041 355705.3345 9737.5642 9148.0325 5633.379 6971.0241 12133.8346 8132.0844 79374.6735 13690.5448 28906.0657 255758.9316 21367.6784 22351.9284 30088.698 39214.2694 39214.2694 66614.7812 27701.1035 11082.6529 13835.4359 25457.3707 23626.5563 9651.6978 13241.0295 23516.674 13679.0292 32452.0584 18651.9109 35725.3459 43969.7721 25434.2086 17886.8317 49489.5024 11957.1733 295660204 oxdb Organic Remediation Aromatics Nitoaromatics Paracoccidioides sp. 'lutzii' Pb01 NA 5263.6024 193647.8767 7956.7094 2722.3704 13410.4382 5656.8929 4913.3337 15724.6625 4504.7014 3742.9324 3348.4725 262377014 TIM Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6198.9878 9011.1582 2716.7322 478069.6447 5706.4248 2211.4044 2211.4044 3906.7035 9492.8268 5998.5235 5447.4527 6670.6557 2414.6423 5028.4991 6585.737 8892.4818 5734.9183 2905.0406 2510.4661 3190.8115 2851.3949 4947.2567 51534821 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 100989.5051 12662.7895 1161862.1921 60125.7954 141578.5435 24921.3737 2154.1672 72430.4531 7372.66 3680.9945 5519.4931 4846.9377 4846.9377 85840.8406 9435.8645 32502.9601 12585.9066 13152.6948 5307.7204 14466.824 71395.2662 17158.9152 14260.4782 15765.8805 15540.6636 15305.6194 14143.1902 189518.5108 5877.8284 294084940 atzb Organic Remediation Herbicides related compound NA Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 5104.2599 13052.7476 2283.0598 2899.1318 132242.3286 7790.7247 4823.4743 98521.6405 8058.268 3599.8837 5488.4952 10667.8366 10667.8366 9050.7707 4873.3199 4181.7438 4996.1079 5404.6439 3030.5781 3910.4858 6110.3705 4124.617 10679.0068 4368.2725 5151.6644 2950.046 5533.0049 6946.1687 2355.6857 5991.652 247543430 cysI Sulfur Other NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 15710.4774 41315.6392 5479.4293 10160.5235 8524.0962 14046.1925 8364.0488 3269.2981 5857.8063 14168.7977 11393.7083 83835.7723 22307.2376 19637.592 14134.7365 10580.4675 10580.4675 5774.1271 13911.4364 7150.0874 4361.5197 19192.0532 3916.8385 4930.1477 7078.9683 39735.2714 5705.3127 119039.6299 9323.1866 15407.0744 3488.4987 11716.0713 30881.1187 16323.1972 44401.3322 145282416 suc_CoA_red_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 8325.2933 24090.26755 12029.259 29554.73245 11481.42855 4752.46595 9357.1036 4470.3438 5996.34405 9896.9718 6213.3591 267665.4924 8372.5077 20453.47355 15371.82075 9165.8694 9165.8694 8943.7748 26550.5468 13300.7453 8141.64105 6526.0864 13795.89125 5641.48805 7520.6872 23527.5773 5233.78595 21394.96405 14801.1607 21433.0699 7822.59655 9941.2672 11723.9743 4148.2691 10943.94975 218171082 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6346.0448 17167.2066 2792.5488 12101.8144 6447.2657 28877.085 4707.2986 4707.2986 5950.6562 19407.3417 4389.036 12285.3787 11096.5932 67315.7697 50896.7985 7717.9967 64342.5393 11318.9288 21636.423 1966.3874 14728.5223 4628.7628 5213.671 343922373 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 7215.3683 21465.6084 13162.8954 9502.1561 4059.5093 10531.7405 4732.8391 4224.038 6178.9616 5250.0458 93736.7367 71391.2577 14567.3189 5641.3183 2956.602 2956.602 4753.5768 10614.9401 7937.381 12837.3169 5783.5202 46096.2189 7869.5465 7702.5029 9509.2121 27473.4602 11531.0695 9378.7421 9251.3749 7989.3794 47168.8381 4739.8337 94008.0662 254466287 cmci Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 535367.9856 102931.8402 1202747.1431 112239.4136 202315.0916 96569.6093 481718.3887 649114.973 281056.6102 238120.1056 347926.1731 364336.401 6937567.9479 262656.0813 336855.7868 448345.3374 327595.9569 327595.9569 372874.4186 312209.6803 444634.3104 750461.9253 480805.4443 425870.4543 436177.8249 206193.0451 322790.7776 312385.5868 472437.6427 240388.2354 335193.6228 423055.4886 185253.0399 285301.8607 404330.8123 677522.2517 14276189 dsrB Sulfur sulfite reduction NA Desulfosarcina variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 10217.5786 7772.9417 11794.83 49538.6459 5185.9717 5008.0411 20055.4734 100244.4024 26526.6573 15282.6572 35955.6594 479383.3888 31251.9009 16610.9743 22333.316 19287.0127 19287.0127 19931.6569 43814.7752 17467.7153 7285.8043 87873.8498 30248.1648 16623.6318 20465.2301 26599.5871 63204.5359 51203.6194 43134.0368 24560.1694 21722.5509 16374.1491 27691.9129 24549.4082 7390.957 224579026 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 139353.5243 54715.6344 135034.0887 75032.3067 367471.3566 18979.7079 274407.0048 531366.6563 70039.1283 106277.2368 171390.3605 165882.3186 2557103.1219 199022.1456 867509.0645 1971758.1313 221715.5079 221715.5079 190485.4084 133077.6376 119156.5376 1424751.108 282817.9336 138170.9423 110969.0068 93058.2013 170966.5029 135857.2283 341928.4557 354355.0054 135655.8076 473357.9098 116821.1427 143789.624 159359.1542 217126.097 375145744 ara Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 3996.6619 93770.5611 7902.4587 8689.2803 69629.2537 4238.8335 6711.6469 29959.3735 7104.277 5691.0164 66916.3656 3785.7741 8086.8355 6695.9782 6695.9782 3068.7033 14998.5685 3871.0794 6908.9118 5190.1131 5036.2838 10527.4426 3579.5241 13361.9202 11654.6645 11925.8597 3790.7754 14326.3304 5355.0015 7090.3582 9439.6266 9460.3611 367019058 ara Carbon Cycling Carbon degradation Hemicellulose Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 9426.0707 36993.0072 7073.866 103920.8206 6724.2991 8039.8248 19507.2152 8053.7705 12803.4382 10510.592 216666.8785 26828.1224 9336.3921 15046.269 8906.2619 8906.2619 10722.758 16615.6874 8246.6588 24916.1139 23641.0317 9997.3506 5414.0534 13826.6526 11488.661 13675.994 39177.017 6239.5907 19612.6196 6651.3264 20829.6162 11939.4834 7664.0436 75429.5071 397885137 nitro Organic Remediation Others NA Pseudomonas fluorescens Q2-87 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 32727.7434 13948.3226 11403.246 7369.8706 47300.2417 7597.5905 19470.5117 10995.3526 11051.6193 9878.2249 15816.6014 19640.4394 6380336.2687 15985.8955 331608.1197 24874.7905 7479.3752 7479.3752 10346.6946 34460.9346 19755.1278 14930.543 12036.0504 13569.4466 7937.4607 14019.1555 37922.126 49706.2655 42030.3968 14912.2128 22996 16367.0897 12390.8618 12719.4143 17466.728 15382.6374 253988158 cysJ Sulfur Reduction NA Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 15303.6061 18128.0414 8243.3916 20646.0006 9263.68 14516.8672 10557.008 10442.0349 11159.9577 6558.4901 237662.9521 44029.6679 22876.4707 7117.5991 8930.4308 8930.4308 5878.6577 18227.187 15533.5447 8650.6118 37840.2148 9930.0402 6427.1394 5885.5182 9583.8679 13282.1567 28481.9448 9206.0615 21007.6625 16296.6371 9107.1963 6863.0449 7422.1121 11210.2294 71383772 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. UW179 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10384.7919 9046.362 9126.6134 20387.9986 6171.0255 5961.0021 3971.6483 5752.3467 11246.1155 6274.9537 119708.3639 8953.1529 14495.4733 9319.9946 4004.5551 4004.5551 6534.9932 11959.8982 6284.4234 10291.2592 10908.1271 10192.9283 16359.1047 7618.8006 13243.5678 3697.7909 15797.0112 13623.0983 27627.8253 4326.6423 11894.6161 7350.7129 4082.672 11677.7072 225001297 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 83687.1064 398222.2035 17885.5605 58126.1005 55654.7467 35093.3219 185095.0723 16100.9275 25128.8852 50804.4547 33831.3775 836938.152 46671.6335 129830.0165 89044.5295 58216.241 58216.241 35451.3185 46768.9819 28864.8437 63896.7036 163257.8814 23315.2541 26340.9342 38899.2469 92729.4288 40096.7678 126318.5062 116053.7166 86114.0444 80517.7048 33229.0342 35443.472 22902.7907 37745.6802 308226450 linb Organic Remediation Pesticides related compound NA Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 21142.6446 14220.6768 23961.8125 27598.1768 7924.0579 22952.09 28125.2025 16588.5625 35055.4686 22397.0858 14949.4049 465400.3317 27464.7088 41840.9104 21861.7626 14070.4627 14070.4627 17770.6678 47824.7933 23819.4756 20322.8825 42831.7759 22087.3808 10693.9987 17986.068 38385.7538 14600.0429 47246.1772 29079.6004 35906.7565 17782.5336 18340.7169 19743.1675 16956.7837 32566.1274 354616705 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 14372.6363 54363.513 6510.6061 32839.8377 43950.8593 11817.5034 21305.6466 192682.2348 9855.6032 5516.3167 9615.1871 146969.6741 17367.2359 16907.7 70275.6546 17481.2585 17481.2585 10536.0804 19872.384 8801.1794 9122.4229 112013.2802 17726.4044 6138.888 9244.2597 24582.9569 7143.8107 44877.3386 22680.652 14113.2317 5366.4802 16643.8871 13137.6786 8429.0224 10870.6555 357009927 Sir Sulfur sulfite reduction NA Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 40464.2079 118917.2151 24445.1472 7596.5398 53858.6853 6107.2949 14382.6579 12036.865 64901.6941 18194.3862 17702.9992 34395.4759 303296.7376 36625.6202 48881.7906 62331.0992 39212.6856 39212.6856 27148.6762 76430.6783 39188.0248 54105.1974 63481.1059 42177.5845 30094.7454 46791.1508 36790.9135 27652.5249 140346.8549 31053.6492 65253.5582 19147.3953 52762.4101 46735.4025 154854.4376 42755.4429 398809605 xylj Organic Remediation Aromatics BTEX and related aromatics Variovorax sp. CF313 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 23509.7037 8855.7913 6073.4059 2424.9704 69024.2105 7453.4462 17026.6341 420924.6134 6184.163 13528.0397 4887.5786 68462.3027 68462.3027 5919.9743 13035.5661 10661.9949 15904.1664 19498.7298 4133.9093 3556.6572 38351.0462 2231.6859 12609.3687 9198.2717 7113.0453 2617.7316 6066.519 8873.8432 4348.8323 9237.8049 388440524 SoxC Sulfur Sulfur Oxidation NA Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 7266.7274 9839.1363 20003.9249 4149.3961 7086.9693 3530.7674 15606.9016 127675.0657 10742.0917 12237.1854 14002.3535 4380.4312 4380.4312 5751.2996 12773.5238 32169.4331 13506.216 5757.4118 21375.0858 3394.9388 5013.3687 8461.2414 9152.6989 21835.1889 6296.2278 8571.758 4420.841 8551.9661 8272.1233 7807.3327 11257.5343 334889950 alkb Organic Remediation Other Hydrocarbons NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 10379.2057 8159.3342 3265.5139 10099.2971 4293.0032 6684.4314 6832.1063 3522.8974 167572.0087 9365.8032 5729.0936 2787.608 2787.608 5424.6655 14562.5988 9387.9791 6786.0577 8623.8051 8606.9715 3502.2473 4133.9806 13416.4081 8121.66 17764.2257 5462.9296 13002.7697 5331.3695 5357.2687 5672.8936 4102.367 8275.8305 167647574 ara Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 62351.9884 12790.9454 8060.324 4685.6788 2421.4722 6225.315 11624.7383 5424.8955 6677.0946 186773.1184 7910.4848 30874.8791 4836.8661 4836.8661 9049.8356 5317.493 8226.7823 21404.3593 27358.0397 5094.164 5657.9458 32426.2067 16549.9524 7949.2365 48587.503 4303.8944 7297.5703 14040.2552 6017.8079 345873284 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 5428.9848 13382.5449 7232.8532 3548.499 3064.0663 2115.8967 5383.3238 7563.937 7883.1151 6286.8417 3745.3474 5491.0294 2443.1179 2443.1179 2506.7022 11407.6157 5275.343 47683.1339 7604.8133 4019.0503 3227.6498 7604.1993 4065.9902 12018.9875 5041.418 6227.2229 3877.7952 8625.9184 5338.4763 2604.5873 389879357 alkk Organic Remediation Others NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 6147.7162 13166.4661 5596.2473 6749.5555 10293.3406 10420.5452 4618.0273 3672.9693 3672.9693 11165.0148 5470.2586 5939.965 3726.6448 9098.4203 3066.9639 10592.6585 16511.7406 5496.6272 3409.2565 3451.7013 2801.3314 114189058 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9301.7181 14043.6414 82306.2385 8148.8728 114392.6229 10941.8517 45005.4225 67441.9375 5629.517 20490.0435 99387.0291 30095.6735 30095.6735 6880.2267 18243.7191 8683.5019 12961.7066 123415.2128 6091.7977 20163.2079 40351.3769 17332.5084 7405.6437 33354.2146 30014.0946 177468.9296 13336.8443 15155.4123 36394.6279 21209.0677 9423.285 333937035 cellobiase Carbon Cycling Carbon degradation Cellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 13097.1003 6604.0801 27502.1574 167303.2597 21927.2212 4699.6816 37424.2264 17686.361 23620.3614 19559.636 24722.0364 1073969.7531 34234.9688 36695.7306 147488.6016 36291.594 36291.594 21286.4056 28126.9227 32669.8869 11003.1234 609267.9027 4808.3384 20427.3693 24308.3283 41862.5849 103351.692 61058.4779 26399.208 41673.395 25668.1364 18195.4537 34653.6209 8579.0824 12150.2083 349686830 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 17088.203 26921.2591 27246.826 47031.4495 6770.3844 5367.7739 17912.08 7469.0791 113473.16 20621.9116 13334.3415 321129.6317 21246.2398 30699.1721 17514.4119 14936.1888 14936.1888 96265.7078 39700.02 114839.5273 13430.471 16844.2776 20162.6637 12625.7771 11641.124 35759.2232 9829.1699 42126.0993 23008.7485 33552.7417 10940.6542 15028.8588 18218.0523 63523.0895 42547.8176 359836333 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 16620.5507 8795.7238 80922.5573 14640.7574 6997.2834 5005.2264 31948.8385 10586.9118 14115.327 7679.6592 98252.9266 13490.5328 9584.7342 12457.8152 7595.11 7595.11 9310.5927 13162.2248 7746.2485 31930.1445 12827.6777 25252.5026 5858.4129 4721.7878 27033.9678 8348.7604 23145.7364 18772.0013 18924.0347 4548.999 9683.9471 8447.0739 4453.5215 16584.4323 256669450 glucoamylase Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13901.7696 8330.0699 7211.2159 16113.3954 7373.2667 6568.468 7278.2185 6462.6468 5379.953 14593.6603 7627.5116 157168.7116 10416.1932 10264.6099 8902.5946 18073.4091 18073.4091 7103.245 22107.2842 11981.0949 17009.2527 44842.8796 12250.3294 11626.7774 18021.4195 19831.8424 6486.4248 126384.2672 14167.2749 15789.6326 7309.7273 23947.4504 14240.5648 6339.175 12876.5902 87286584 amyA Carbon Cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 10143.4396 9720.6629 12304.1511 12128.5167 7663.3783 8054.1179 2281.6965 17543.4729 5460.1936 11588.4659 108397.8209 5319.4349 16380.2671 7652.0602 4806.4382 4806.4382 3604.7548 16825.2862 7704.1573 5435.4592 8843.8307 9992.6509 3818.8274 5888.2455 10881.9816 5348.3783 14784.0647 17392.194 19244.707 2155.5331 23718.8379 7745.1575 5756.6131 9317.6447 223492294 mer Metal Homeostasis Mercury Detoxification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 38477.5592 1283484.4177 60643.9429 50926.3506 119594.2214 26346.3667 10478.9037 115032.7358 48599.8693 63572.7503 67467.5813 35990.9438 872127.8047 89128.4697 48341.0054 74095.5385 64243.4836 64243.4836 36433.5701 73416.8663 24150.5089 19440.872 43944.7345 305524.5581 29132.3573 137551.8686 66615.9307 25959.5285 65238.6944 122000.7388 59761.6271 19957.4658 31731.6615 49210.7193 18983.3278 142017.8531 159110439 hsp90_Fornicata Other Phylogenetic NA Giardia lamblia ATCC 50803 superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia;species:Giardia intestinalis; 4491.5175 26901.2606 2496.7082 2909.2965 4328.6278 6341.2532 102594.8062 4611.9433 5953.2246 2386.8995 2386.8995 4179.9711 8332.025 7023.5464 5202.3323 22112.0077 11054.3469 3486.2196 2913.1233 6959.5912 2961.466 11741.1823 7940.4569 7670.5105 3781.2026 3862.8639 4435.8709 4208.3703 9286.8834 56694506 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21576.2872 301687.912 239924.9811 91028.1512 45243.8187 40368.0277 21244.3149 15898.0317 16317.5708 26598.9683 18496.8196 423983.909 74647.7681 23385.0114 57783.3226 49776.7111 49776.7111 28257.8713 37300.7506 19663.8521 16011.1227 25742.2593 26923.3266 72718.3229 26849.5634 42393.2445 31188.2625 61976.6804 23375.2118 43226.8118 43589.0912 24992.7795 81569.1925 57687.506 246524.5121 257479554 amyA Carbon Cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 14562.4127 61909.5978 13505.8914 21190.6914 4338.5404 8609.9373 16944.5061 12097.9952 254230.9699 10180.1385 7433.9019 15041.8572 22216.7579 22216.7579 3267.3276 21486.4217 9909.9753 11157.033 47113.4794 4285.5892 4334.7533 14891.5824 20123.7326 16514.735 77212.4346 13103.0957 13952.2327 45872.316 19007.7199 19773.97 5265.8694 16538.8555 302466157 nagg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 19430.3245 15335.1912 27020.4236 48579.1136 16323.2431 18608.3357 19442.4468 10890.4252 29926.0955 28741.8184 33633.1119 337111.056 27019.6027 23488.789 57605.0309 18173.6763 18173.6763 15823.5573 33847.2283 30077.6145 20073.9614 20591.9015 23501.03 14921.0223 17818.1093 30437.6061 14687.5519 48724.6014 21502.0218 24661.9254 11253.5281 16994.146 14900.0272 43979.5438 37498.8773 335033895 b_lactamase Virulence Antibiotic resistance Degradation Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 17040.9275 13513.4091 48471.7495 8187.9167 3384.8521 17771.8395 202472.9474 7118.4617 16545.7303 16150.179 194929.6968 8646.5346 10281.5303 20313.2953 11971.0245 11971.0245 7841.1891 26376.7544 14483.2251 10944.2279 16072.8537 10483.7193 29298.4966 22728.3878 13865.7813 45276.0551 25232.1382 45678.8163 20578.8866 5215.3955 12714.0044 15128.5145 8654.0506 17221.069 149751925 tehb Metal Homeostasis Tellurium Detoxification Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 7115.9793 6733.23 6235.5942 8759.8136 5764.5392 8882.9562 8658.7979 12420.5696 5713.4561 5318.8992 116990.643 6792.4791 6040.5621 7460.843 5879.9947 5879.9947 18343.3632 18422.2747 10688.992 7356.1269 9392.8138 168272.737 9897.5812 5344.4014 34048.8278 19699.6198 17428.4776 6790.1354 16030.031 3971.398 13831.4986 10477.1205 8150.028 15059.4645 378763804 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 117932.1612 58241.634 64886.7484 92377.5177 59293.5468 28600.4608 88468.2622 89112.4687 67000.8076 74112.1031 107612.4249 46213.7116 1598267.1975 145274.8689 117880.7439 182637.6754 69568.5713 69568.5713 53410.1299 139145.2877 56703.3246 569894.0777 102648.2651 144128.5855 46931.826 44114.2776 89745.9372 46186.441 173043.3711 80714.5711 107777.2349 44818.8602 60563.5581 65309.6593 38467.6442 115626.2319 271969134 cmci Organic Remediation Aromatics Other aromatics Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 10203.1581 9273.3561 8008.4476 6605.1401 25375.6795 10336.1621 10125.074 11482.6417 7381.6573 706782.6346 9362.4895 10282.977 13825.1876 5908.2915 5908.2915 8242.3856 222084.7566 11209.2617 11588.8888 12129.1685 4592.8381 14636.7522 7968.9418 17092.8318 14115.9453 39469.5011 10509.8547 13725.8696 13216.4971 12278.5123 18110.0197 8660.831 23714.3177 157370629 arsc Metal Homeostasis Arsenic Detoxification Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 4839.985 5899.2941 14582.6259 4245.672 24468.8147 3599.1779 5050.5679 6024.7903 5123.4205 3027.5091 11919.2825 5910.9091 36565.4563 12280.1764 6659.6811 43666.7409 3227.511 7292.3688 2829.1912 4364.742 6352.8305 3012.4822 5905.3333 4294.4479 3178.9317 223567.1207 51245731 arsc Metal Homeostasis Arsenic Detoxification Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 5055.2292 5551.3053 4376.0265 8873.3277 2347.2337 4827.322 3030.2856 3278.5279 2226.0275 5110.1761 3779.8359 2701.8963 2701.8963 3821.4368 13275.54 5829.7405 5004.9755 12227.1424 3289.6173 3267.1024 9339.8368 2705.6894 16629.8549 6656.454 8531.5083 4404.1433 7104.8075 5575.6078 2152.2569 5752.9163 338165929 one_ring_23diox Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 18459.6677 18386.4441 8482.6132 14031.8839 9313.2568 30912.3407 6786.9137 18517.6383 13347.899 7058.06 193605.8107 9405.221 42065.0048 28533.954 4659.0026 4659.0026 7506.92 16548.9149 9970.988 9404.125 12758.7746 6369.0155 50849.6509 15578.2159 12505.6422 12372.9493 62954.1227 18571.5852 25662.0646 14813.9078 10951.2833 14137.7265 6206.2828 23914.5437 388438621 nhh Organic Remediation Aromatics Nitoaromatics Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 65254.24 29432.2178 37042.218 20633.3517 10582.722 33613.8061 55248.6345 32374.9767 45902.5217 56035.9875 24693.4438 896190.4384 32070.0117 51086.8596 33761.9586 20393.5813 20393.5813 21307.3785 84672.1915 47628.5112 31479.5815 42856.3579 39856.5846 23953.3477 60706.6733 51578.5256 44925.1988 234227.0861 86753.9397 77213.1989 30224.1799 58986.9395 48457.2513 27019.2739 52684.5117 256670941 xyla Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 25948.9531 5297.5337 103908.3682 36256.8992 21104.9014 5867.4019 7182.304 15504.0268 13364.9045 8486.0232 14748.2683 232688.4196 17206.0251 64207.186 10821.4195 11739.8458 11739.8458 7860.0691 16002.2901 25634.869 11608.3339 6662.5645 21101.5215 5676.9356 8349.8552 20899.9524 9028.2475 39650.8114 14060.9995 23791.8981 11966.9149 10241.1722 10972.6577 11288.5305 9064.0406 219866846 PRI Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 28916.4344 7551.1775 18836.1057 11182.6624 8095.5394 5820.4955 10672.6371 10446.2773 22534.0299 13774.9834 217373.9966 115714.6895 16518.7918 9501.5968 10969.3288 10969.3288 8906.1724 22779.5801 10693.8918 21694.641 18540.8588 17917.1826 10208.1942 8321.4136 20098.4195 16470.7297 30738.8875 9340.814 18200.3423 7714.3327 16409.0283 9501.9244 7946.5719 17103.5235 211584716 chnb Organic Remediation Other Hydrocarbons NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 13029.5531 205741.3975 12931.2178 31638.3608 29435.0498 3649.199 21012.6232 7906.995 5963.0919 6871.2441 184218.1184 15275.3152 18520.6694 19899.5215 10184.8191 10184.8191 6578.9212 8866.0355 7380.8901 6880.7845 6381.418 5865.8165 2331.183 44882.9992 16661.889 17130.4491 14580.5733 11616.4306 10101.146 7274.7033 7375.937 8296.042 3562.2601 8306.0163 40253077 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19437.0825 10206.8356 2237.7011 2229.0649 8901.8005 5208.5511 6727.6777 2839.1866 54765.4576 4929.9282 4994.3261 4167.3541 5211.2357 5211.2357 2609.3045 7838.7534 4088.2934 3968.0458 2065.1667 2554.2422 8386.4706 8760.7142 5900.4387 6645.2613 2623.4905 3598.6093 5700.8125 11967662 nasa Nitrogen Assimilatory N reduction NA Amycolatopsis mediterranei superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 32918.3586 8071.823 11972.7905 4121.6538 6695.4705 6498.305 5837.0392 12058.0328 2326.5438 2326.5438 3720.6258 9468.9259 10519.2775 19952.1383 11971.985 5386.2626 7510.5432 3545.9827 3331.0097 31469.2983 11362.0251 13047.3034 4265.6686 5659.1723 4991.4634 18760.7496 6201.9825 390565727 amyA Carbon Cycling Carbon degradation Starch bacterium Lb superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 94787.0562 15749.1484 9865.989 16677.1872 5896.2072 5516.8657 11611.8067 12463.4165 27932.483 24854.2133 12148.7752 152899.2695 14168.7419 30774.549 16976.0359 21941.4084 21941.4084 11571.5209 30741.8333 9420.9208 11074.8403 16303.5333 5980.2077 9154.6593 31972.2325 19865.482 8422.792 55591.3708 38014.6122 20830.0138 11341.2299 12144.9747 30602.3723 14493.2426 314352.0844 359688400 chnb Organic Remediation Other Hydrocarbons NA Leptospira licerasiae serovar Varillal str. MMD0835 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 5189.8479 5766.6822 5158.7369 2347.1197 2027.0197 3296.2035 7076.5642 6213.8697 2960.5632 7159.3082 7972.3824 3883.9544 20660.2952 4465.5629 5448.2719 2882.6123 8388.5192 7165.4222 3301.0752 2598.2722 5752.3029 2075.1392 5260.4877 312795133 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 16594.2564 17092.2536 10089.1037 5372.7741 7469.198 17468.5921 4690.0086 15359.4584 15343.5349 80049.493 15872.4291 15864.8359 30081.9921 18517.3829 18517.3829 5652.2706 33483.0365 11070.6091 9751.1565 21180.8648 7091.5487 8049.2643 9212.5067 11773.0979 10141.1727 58972.5207 22360.2012 12296.0552 11891.3827 35581.8475 12969.5901 14129.5287 7336.1614 365804439 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 458962.1363 32076.7375 643396.2724 181324.8836 314482.7268 213518.4417 137816.338 142108.0141 599081.0933 186882.56 331108.8835 173515.3085 6001339.561 277441.9319 372384.0219 360252.9401 270487.862 270487.862 122368.3814 260137.4114 239774.5143 275575.9702 355136.6975 236879.6472 120807.356 128473.5891 208941.9192 94649.28 503819.6564 283104.9655 552371.6837 66735.8977 141731.66 230754.3651 104613.6687 446800.5766 269127805 amyA Carbon Cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 54755.8874 413822.8813 11792.6446 18149.1896 45059.6747 9892.3403 20565.9991 25862.9513 5046.8836 17477.0697 72097.5683 20302.8154 526549.9926 32240.0437 46843.4979 51119.4268 27267.4919 27267.4919 11045.6595 51986.1941 21573.484 63143.8373 29032.3924 11904.2352 13418.7064 21597.7523 39987.0657 18160.0328 69154.7866 29841.2205 46526.6276 17413.1399 35284.2832 27273.2438 12422.6523 88248.0296 189458761 lind Organic Remediation uncultured bacterium superkingdom:Bacteria; 8421.0383 5928.7288 24107.114 5923.2827 4266.9209 5479.4307 3442.9802 5964.0315 3057.1803 90374.5094 5474.9349 8078.1759 16197.7845 5773.2032 5773.2032 3355.2151 6751.3687 4635.0326 4079.7383 4950.4206 2418.8278 4828.5814 13612.8221 2394.7744 12328.7572 9266.2506 18571.4713 4239.5852 4592.3672 4619.5729 3493.9724 226346752 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6663.0576 2528.6796 3054.0719 3667.6521 3822.721 11375.1613 65816.739 3722.5525 4154.439 9351.3623 9351.3623 3846.1177 6729.6995 5239.1726 13960.9074 5726.882 3729.8995 3316.9128 3917.9377 14427.5153 4454.2069 3618.2759 2875.1319 2922.0453 3591.7874 3618.4921 6491.0958 189195024 Cl_peroxidase_fungi Organic Remediation Aromatics Other aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4619.9908 2412.9159 3788.1032 4137.9315 9099.5275 2380.1384 81699.8111 5874.7425 5195.8666 4382.0424 2120.4991 2120.4991 3358.2544 8987.7336 3335.6771 4658.8648 5981.6988 2830.0176 2078.8791 6551.285 1903.3349 8015.2335 4661.5211 7918.7355 1834.5569 3484.6244 3090.0802 6086.4528 34105546 endochitinase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 3978.808 5410.006 3467.6786 4048.143 30061.0886 8921.4261 2962.0172 5609.1106 2978.6201 3812.5164 1967.2175 2505.2414 3159.3576 2033.5304 269786088 chitinase Carbon Cycling Carbon degradation Chitin Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 4148.3636 15316.8754 2982.5759 4252.1645 5028.0174 6351.6037 3382.019 5333.8283 84305.6215 10069.2357 3080.3147 16141.3893 6553.4971 10250.5827 4614.6447 8081.5791 5128.8853 3465.1597 7316.0935 385258300 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 10488.6541 34605.089 5470.3111 20199.5576 12885.057 7229.8891 6447.0237 4570.3984 127831.8371 6129.2991 9640.0771 19307.1083 8997.0615 8997.0615 8567.9106 9773.5734 3524.9017 9241.8032 7561.9372 3737.9989 27211.3919 40504.9288 3194.8946 28277.6338 23584.7683 12692.4912 6584.3115 5847.2352 4015.2379 4429.5051 49835.5023 42738638 urec Nitrogen Ammonification NA Bacillus cereus ATCC 10987 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 5291.542 3220.3119 4365.349 6898.1119 66289.3505 4187.7265 7473.3604 4850.2152 7134.2817 5327.887 6484.2484 6503.6099 9159.4767 6327.5157 6161.3411 3742.5139 2704.4654 8299.5701 364505603 hzsa Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 66965.4299 11684.7173 15556.9292 539304.1041 33102.5403 6829.6104 25996.0777 50997.3764 13995.3852 20628.9908 77794.2202 43038.0203 716101.9855 49077.1859 31726.0914 60953.3875 18725.6496 18725.6496 23148.7061 46403.6244 27788.4932 46271.531 49587.0558 48105.1153 25488.7074 17769.8153 35527.2196 22582.4785 86124.795 20702.2164 41674.9665 21105.7451 32961.4484 21700.4445 18109.8565 58790.3464 311228766 vana Carbon Cycling Carbon degradation Vanillin/Lignin Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5823.0711 5160.7226 11770.158 2038.4594 2268.7647 4440.601 5620.9373 4081.4977 19302.5662 2293.0201 6385.7862 2152.0468 6179.6651 7047.6812 2219.7539 2565.9267 3162.4755 2555.7844 5572.0726 226355771 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 28697.4496 2883354.2021 903896.5501 9356.7536 6831.5926 6000.6867 20978.8207 25313.648 9452.4995 152022.2343 8834.7892 11474.441 10170.3084 8015.9102 8015.9102 10771.5188 18318.8052 7850.8046 32248.3586 15431.1167 7626.2281 8253.5826 9235.7376 6828.7478 11007.056 24261.6957 5000.4642 12600.2487 3381.6202 19866.968 7637.6811 4204.4621 899589.0299 296930048 amyA Carbon Cycling Carbon degradation Starch Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 17755.1311 2208239.8668 355903.5256 39228.1991 9968.408 16658.9698 8486.9406 175794.2273 6453.1631 13928.6474 9160.7347 9971.0791 9971.0791 64547.1653 77428.9246 5092.9778 10855.6309 58093.237 13409.7774 2772.0622 13393.3357 18094.6213 29792.4043 25325.6544 38413.8699 19473.2784 15929.3194 10392.3685 233707.9 4006.4643 336117569 vgb Virulence Antibiotic resistance Degradation Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 13337.5032 31523.1018 1123794.9053 10877.6228 30688.105 14256.2839 9532.6989 15373.6679 10441.408 116865.2922 36097.8116 10395.2879 40995.1524 11905.6399 11905.6399 10139.2764 41153.2273 29886.7904 29409.8758 11287.8222 14594.6435 4597.7481 16411.1459 12079.4894 28730.6632 22589.2171 27668.6993 64326.09 11825.9972 19031.5013 5545.1304 13356.4164 126714814 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7351.6209 7878.2553 4602.198 7183.445 41014.4301 3974.1384 16130.229 7030.7286 4266.0009 4190.3981 3699.8221 3699.8221 3406.6182 7717.9878 5130.4602 9497.064 7178.3892 2783.0413 26621.6237 10254.2387 5094.523 16329.5565 5174.9769 8687.686 3794.4061 3310.8347 8740.2512 23021.1418 378731525 chnb Organic Remediation Other Hydrocarbons NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 16221.2961 7954.701 6510.9608 11377.5522 8667.9936 7348.7328 5868.3727 5541.7425 109511.8458 7926.2351 7436.0089 6003.6687 31280.4298 31280.4298 3076.3999 10698.0154 6020.6119 10169.4023 2662.3731 5544.7124 8237.3663 3591.4162 10607.7714 5215.0258 8498.5463 3617.5009 4583.9911 4629.1193 3666.1572 115353435 endochitinase Carbon Cycling Carbon degradation Chitin Chaetomium globosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 10122.1101 1175525.042 4992.5009 43268.4801 5583.6306 4066.1255 3300.4322 24934.3261 10203.0456 5276.7943 2689.4147 137829.8489 3559.4819 4960.2892 3378.9804 3378.9804 3410.4451 13023.5549 5869.769 4368.8501 5415.5903 5431.0851 2223.7244 3841.3496 11149.5114 3101.6209 9574.439 5444.1759 8028.9852 3269.8133 3460.606 5566.6292 3037.4946 5745.4186 6690687 urec Nitrogen Ammonification NA Rhodobacter sphaeroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 17310.7086 6310.6475 15025.7917 15604.7958 11440.0891 15876.9617 6361.76 22035.6979 13902.5793 7859.1501 291951.234 19650.1415 13906.8823 6835.9502 7065.8695 7065.8695 10103.1674 14634.3274 12623.222 13039.9259 12687.2322 20032.7008 6905.2693 7451.9166 16749.8749 5343.905 18473.6563 9156.67 17807.7855 9370.5794 10231.3782 9643.7174 5635.3406 18132.4053 374313627 arsc Metal Homeostasis Arsenic Detoxification Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 5893.5557 5876.6783 4665.5925 7109.703 7944.2798 2884.7477 3587.5785 4416.4418 2604.9562 109466.7626 17359.7895 6043.7027 6112.6628 6169.9635 6169.9635 4438.931 11571.0998 10744.2415 5215.6791 9142.786 4641.2438 3006.6858 6645.859 10776.2653 3491.0822 42916.8105 12758.2322 17664.4198 5121.145 15200.6888 5131.305 2242.1625 195933454 soxY Sulfur Sulfur Oxidation NA Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 6434.5726 26278902 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 56019.3019 31586.6777 25364.0032 23561.4762 22387.7051 10744.8921 40460.8789 99655.4294 18242.1467 21037.3696 38462.2126 62892.7541 1045426.9704 36639.5795 33841.973 54221.6523 79526.7771 79526.7771 40411.8857 90085.3679 25968.4496 23342.3738 38696.5529 60900.05 66699.2436 24381.3034 28131.1371 35923.8119 80266.5719 52458.0144 86501.0072 16350.9302 128813.6007 40978.4975 75548.7259 33285.0145 342861344 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 18657.2615 320917.3948 16261.9043 49970.0031 28131.1329 6553.6431 198407.0004 71243.2405 23047.1332 27215.6143 39440.3665 419541.2797 78735.8901 27789.3076 36160.0476 78973.7618 78973.7618 29879.9846 32228.1114 23977.1122 20669.3229 24817.8644 22920.4601 14936.812 31114.0185 40987.1926 34245.6702 52251.8992 29006.036 51578.2818 21989.0469 46842.3851 35946.4143 94709.4797 56644.2491 99030605 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 13346.5467 5633.5949 53652.6159 69025.3971 17619.6277 9120.7068 5683.9578 15194.7497 15778.8258 15704.7666 194117.6958 9520.431 13450.1026 229425.3041 10038.6936 10038.6936 44321.8397 17858.9081 17157.9326 8318.45 14531.7225 48889.6938 7613.2362 16320.1711 25771.7198 18854.9619 29070.0141 11903.3568 22634.5697 9123.4132 9232.4887 20055.3025 9275.7751 21124.1818 319754356 xylanase Carbon Cycling Carbon degradation Hemicellulose Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 12470.8056 8101.4474 8500.7489 23851.5799 9534.3793 19443.5614 26358.4462 2722.9694 6310.8824 12985.1022 11270.2416 194024.4785 10234.2391 37972.4093 43459.0928 14647.4304 14647.4304 6287.0038 19519.1638 9492.0798 27951.3774 15966.0594 10997.3132 5485.7645 15549.4818 18183.219 13606.4309 24954.8687 16754.3655 23319.1046 6117.6337 9521.3501 8859.9202 60738.8233 9229.9458 375142655 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5583.7416 6218.1611 6923.6785 14241.7937 12646.577 6168.4664 73059.0148 4380.4966 76853.6454 7842.7486 8496.7179 6650.7309 14442.6076 14442.6076 5341.3012 19135.0823 6810.8452 6938.6993 8921.8919 12321.0564 5188.1308 6554.7403 10344.7208 4410.9448 21351.271 10486.3794 10862.3815 5418.217 9316.6284 6109.36 3575.498 17919.3792 359729313 chitinase Carbon Cycling Carbon degradation Chitin Leptospira weilii str. 2006001855 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira weilii; 9021.0691 7309.0957 7994.9582 8398.1734 14471.4456 6832.5675 5517.5886 7501.2104 4273.7097 219093.8295 6035.6192 9887.5853 9450.5444 50884.414 50884.414 6143.3643 10335.4407 19323.8632 4419.7647 20973.7383 5174.105 5597.9211 4615.597 9406.4482 7274.1012 13605.8079 15370.0272 13041.8154 5399.3227 4242.7735 7348.3624 3193.6833 13812.9449 312200115 ppx Phosphorus Polyphosphate degradation NA Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 94689.8652 5592.1539 3040.8147 5813.9731 3078.2855 68838.5855 4185.5808 4052.8688 4496.0533 4645.5926 4645.5926 3397.7084 10766.8612 6432.3136 3996.3413 12757.2644 4680.4301 4069.2208 4083.1427 9283.7498 3161.2995 13694.4313 5333.8646 10533.4319 3758.7078 6185.1101 12707.4105 3437.5426 18542427 protease_serine_fungi Carbon Cycling Carbon degradation protein Tolypocladium inflatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Tolypocladium; 34596.0164 14544.806 14372.8792 3644.8197 17265.1349 40410.0945 7831.4738 31517.2354 68014.5024 1200996.8134 27384.0911 34521.6248 17626.6212 20210.7457 20210.7457 10393.9761 29896.196 34655.8104 45234.4849 31143.5979 9674.7713 9121.4704 13443.3997 14109.0618 10968.7761 37457.0703 42288.3836 32761.2885 6660.6433 44990.3994 26798.2768 6172.9001 30065.5261 398177448 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6148.4472 5030.3431 4336.2029 3341.9103 3894.9827 4581.9099 2622.3935 101474.9595 7008.4146 5935.8381 9002.2135 5241.6524 5241.6524 3328.3532 6798.025 3712.4062 4510.1875 3921.8735 7454.3239 2506.449 3251.5283 9281.0184 2158.9281 8581.9447 5632.4413 5763.5127 2832.1677 3802.9972 4762.9312 3146.6459 7544.738 169599619 rgl Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 24699.2621 12507.6434 16349.1417 17524.0081 9139.4471 14179.1413 12331.0445 10254.428 18166.7862 17874.4277 9698.7955 489691.8502 19875.184 16830.2693 14208.0759 9152.3023 9152.3023 32487.3633 28043.2721 15002.2535 14229.4429 23982.9618 25576.5746 9140.416 9129.8624 20975.977 6967.0931 38225.833 19828.0869 23904.2316 8219.6269 12859.9395 14116.0666 10382.168 26939.9736 157273335 ppx Phosphorus Polyphosphate degradation NA Candidatus Chloracidobacterium thermophilum superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium; 4209.1128 2975.5998 2941.6533 2498.6121 3668.1799 4206.6506 6705.4766 71517.7701 4266.9924 1960.9101 1960.9101 7091.1798 4582.9284 11610.0941 2832.0497 14105.6501 5159.3401 3725.6133 6582.674 2241.587 119955705 vgb Virulence Antibiotic resistance Degradation Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 42885.3994 19775.4149 57993.1991 34747.857 18646.1668 25745.973 27273.9233 43497.0223 51222.6178 43660.3728 32514.4253 694228.261 41490.0383 81395.608 45678.1391 25290.6957 25290.6957 27206.8488 54837.8753 35094.9784 43154.0233 49064.1739 85574.7445 28279.778 34536.6879 48976.9744 29564.295 76977.8603 57246.1955 52358.6113 25066.4252 32016.9685 39737.2733 27704.6325 151708.3057 421953058 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14196.295 13750.6126 9588.7087 20951.5384 11522.2873 14109.167 7476.4005 11551.8703 13593.4352 5061.3528 329357.0371 14474.1911 10363.978 8252.953 4554.0197 4554.0197 8132.7982 19336.8946 14985.8954 11699.6229 19610.7282 20095.021 8033.3219 7326.5217 17703.9597 7908.4213 27992.3022 13984.6854 19773.7667 7754.6439 10569.5984 10279.8105 8192.8044 21384.193 371772134 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 8243.6424 4195.1468 2737.5898 5781.9909 4525.7887 4263.1768 2398.903 7119.106 3288.7578 2808.4574 6052.889 2330.5641 177840308 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10233.0047 5714.3272 11856.7291 4542.4707 3149.3265 10645.0113 4809.2993 17723.7653 6524.9753 116113.2945 5192.8502 6946.7451 18817.106 6368.4975 6368.4975 4163.6268 50851.9236 4180.0522 3657.652 2984.9305 6201.3973 8116.3482 6246.2507 14520.3489 8826.9274 5919.2237 8466.9683 4617.8039 7538.0358 5837.0586 337265044 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 48281.7047 6210.8656 9081.1892 3341.4798 11113.9959 7615.0991 15025.3198 3627.4585 104342.2951 5825.6096 7185.7271 7410.8838 5782.9337 5782.9337 21677.1166 11965.8662 7235.4966 12688.6499 6175.5382 6140.8962 8560.1715 16164.7078 8607.7617 35092.6781 11752.6983 14627.2333 4908.2977 42644.8802 5278.6694 3659.8201 11098.5287 374573853 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 25868.7333 10520.001 9924.0365 11170.8931 5546.7688 11089.8445 12780.3128 35444.6609 14935.7249 19691.4642 604101.7677 12493.5609 36431.5605 33738.3708 26157.6086 26157.6086 10964.7179 36484.2933 10178.9144 16921.977 22740.3814 18237.1497 11504.8138 13421.6827 13727.8676 33263.8297 54200.42 30288.6464 27258.4804 9252.8116 26888.1073 13834.2583 26417.5213 38459.3606 153962964 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 165469.0055 73954.7639 247445.223 118320.0521 156823.2662 38289.334 211263.1745 222006.7728 207095.5192 191500.9007 176368.0045 166208.1573 3001659.1053 211929.9638 330421.7471 229492.8497 184387.1663 184387.1663 147453.2162 696504.6114 197165.5945 388808.8245 246881.6463 1139027.4122 113498.271 124237.8753 237253.6716 104050.8176 496273.1577 200078.9228 196886.1138 179254.503 121756.3026 145149.7339 149322.1875 349569.4184 365750079 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 38878.6644 7213.5003 8910.7193 7330.2678 6642.9565 57356.2637 5024.2405 18827.8992 38207.1719 120267.8167 8360.2128 7651.0191 15694.8339 4406.3388 4406.3388 5325.7474 13379.7328 8404.9107 7607.5687 14632.666 9310.4458 6408.8552 6890.002 13869.7098 10747.6965 47079.2707 6175.3478 14404.4098 14442.826 8643.0662 8997.1855 15805.5336 8480.7166 398803502 linb Organic Remediation Pesticides related compound NA Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 49746.545 32137.6842 145251.4134 36810.8651 18089.7494 44801.5144 89180.8347 20513.1574 30961.9583 73329.6562 50118.4428 579166.4401 60376.1628 53985.6474 44921.303 32888.1347 32888.1347 27295.1006 88873.9385 33311.2112 43103.4778 88293.2936 32165.2007 40215.7813 24077.6798 32357.9824 24355.2925 156080.4325 44615.5083 75813.7359 18909.9105 40401.3505 56842.4377 32439.9056 32019.5503 189188528 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7269.7348 2194.2225 5350.3606 2037.2107 3803.3152 5381.2719 13349.5169 2493.1756 2493.1756 4326.7975 11079.8555 10431.164 7272.5627 7176.7866 11670.7278 4264.0597 4008.3215 7219.2284 3896.53315 12168.4754 5281.77245 16549.6143 2760.97215 4524.60375 6130.1862 4538.0024 10393.5629 298270032 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 15725.2084 13086.8431 19541.267 10865.1252 2714.6345 28333.1568 5293.3397 11378.339 5728.0109 116380.499 7528.94 6307.608 6501.4638 6501.4638 5234.9319 17991.9891 8498.8503 57125.0006 23054.384 5804.4681 5033.5271 4533.9958 8986.5079 29776.5684 16974.9122 11526.1995 10940.1772 4948.3835 8675.9495 9151.2625 5192.8963 14205.0103 291301232 terc Metal Homeostasis Tellurium Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 39528.8922 18393.5402 317991.5542 9386.307 94092.6429 21150.3742 11539.4254 59178.9718 33335.9897 21796.8389 30491.054 41829.3084 1319983.688 27662.0887 46628.0064 64183.2566 68045.6213 68045.6213 57908.7682 75060.373 16613.4154 30822.6916 48712.0747 23127.5574 81948.5879 22180.9389 62091.1075 30422.8315 66965.9762 85590.344 54349.2289 16321.0062 32338.6105 25993.2017 55639.4959 15498.5443 224947212 cellobiase Carbon Cycling Carbon degradation Cellulose Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 83497.2462 9459.6512 582823.5209 25483.8266 4865.1488 9869.0232 220953.6588 4779.7638 19484.2232 26181.0912 39508.1071 487924.7562 20089.2732 24653.2902 37236.6876 13827.153 13827.153 13034.0182 23600.2972 16826.7152 30348.6873 36255.0073 30134.1094 53007.8994 12188.5098 128050.411 124773.0513 38590.5285 125729.1479 21336.4122 7836.7864 11279.3147 14007.5115 102553.2414 42322.7538 219995470 TIM Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 11791.183 5759.4332 9273.3659 16856.2201 20942.5288 4876.1751 3133.9726 11878.1823 7728.4 202274.8349 4436.5478 8225.4356 3191.5532 3191.5532 2534.5894 6573.8985 3291.5945 4337.1182 5335.6012 2144.3569 2350.3188 6296.8247 2178.7266 9089.9364 6769.7348 2367.5521 3020.4271 11425.7749 1987.9068 6160.5765 321161571 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 240740.796 231534.0884 67080.2224 155475.2507 138959.5463 82094.098 96487.9963 208722.7261 59705.4818 76951.4078 121984.0344 8802619.4715 143262.3389 225583.3529 183415.4952 163996.6141 163996.6141 39837.4762 237858.8636 58648.1671 418364.4093 161967.5294 206559.4568 206788.7898 233506.3267 108883.1682 72930.3446 258537.5643 304980.7812 229811.2372 95822.4277 145900.1842 101375.5993 50626.8066 594143.7459 194332861 soxY Sulfur Sulfur Oxidation NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7852.3655 11343.3343 7964.8174 7130.8682 2838.073 2604.2502 4947.016 6658.7508 4904.8118 2420.8345 164169.0253 6154.5366 5274.2356 4818.5754 3339.9663 3339.9663 4326.4029 13805.1652 10042.0999 8774.3702 11139.7622 8515.5875 3515.1628 5409.7729 12657.0054 6059.1661 17952.6713 5226.4817 9969.4605 3336.9872 6026.0285 5698.934 3932.8675 7624.1582 383105931 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 5748.9668 25292.5108 3192.042 2112.6895 5812.8524 5198.2022 4805.2839 2431.5723 3094.2558 8226.5666 3367.8046 9009.6316 4196.2576 5284.857 2284.0926 3668.4835 2993.3741 2430.642 149360190 catechol Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6293.5669 2535.2145 7346.8802 6515.5939 3793.8067 3121.3812 85258.3131 4220.2518 7451.9263 3070.5479 3070.5479 3821.4526 8245.3507 6196.1678 7277.6431 5555.3348 3055.2882 3328.1348 9252.0541 3835.9489 11653.4752 4262.5049 11283.0202 3770.5894 4730.1544 10978.2344 3440.5853 9086.1946 157404654 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7246.0643 4757.6871 8320.4444 4228.2775 2257.2484 3998.395 3798.9846 228113.4911 6892.5411 7140.3714 4598.1119 12181.0693 12181.0693 8460.5279 6335.4011 5545.89 8921.2094 13314.6099 3592.2796 3708.446 2474.3804 14374.6021 6012.8844 6009.1732 1728.4364 9709.2748 6170.9832 3104.31 304312364 bphc Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4661.7296 4613.7695 4488.9283 8755.3142 62191.9186 6084.7648 3255.7248 3255.7248 4141.2525 6394.5794 3467.3521 5691.1385 7552.8145 40920.4634 4300.4008 11041.059 23784.4961 2775.0796 2901.4997 6919.4344 346989453 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 108674.7716 1157535.3259 103362.4348 820491.2699 38343.9604 26226.31 124604.3317 237250.228 48808.452 71381.9733 54749.8338 63457.0316 1870186.8572 574662.1675 92621.7567 603583.0422 69176.3539 69176.3539 49733.3948 63167.8347 34000.5128 130564.5332 93589.7351 85625.598 89001.6487 60173.0314 254136.8564 141352.9461 273617.835 177735.8515 116607.9379 34923.6498 77559.4491 60244.1717 233095.0052 568166.4625 168705567 mer Metal Homeostasis Mercury Detoxification Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 4687.1186 4077.2435 2280.3252 5722.3301 148499.5378 4814.3406 80696.2528 6626.8924 1772.4068 31294.725 13423948 pcag Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 312777.12 127949.0583 117652.1731 153801.3858 274488.2707 156938.8791 134190.8205 113277.5701 357513.3643 148817.3287 234886.8239 7122683.505 666820.2886 347443.5313 243872.1138 212689.8406 212689.8406 140715.0279 330847.4988 112727.9294 260440.8629 208345.1839 71609.6707 139628.0881 115580.7287 111363.1288 106572.8531 271999.9624 237196.2611 154310.8507 113862.1389 208584.6112 130865.3477 137720.9685 297093.8276 306517205 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 72295.3763 225735.1085 27665.8791 16590.8851 44565.0483 14042.487 11781.838 35028.8704 30146.373 26203.6593 479219.9075 24242.8001 135029.0099 48289.0254 58225.929 58225.929 22246.5818 100865.6713 45131.5236 41449.7045 133159.7775 28242.2061 27713.3878 21375.8082 33699.3056 24383.6463 68674.8088 34191.1837 103120.4506 37575.1681 22667.0012 68466.7462 18694.2757 257799.0005 270291528 xyla Carbon Cycling Carbon degradation Hemicellulose Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 12334.3166 6698.1891 8416.384 22108.4755 4376.1549 7196.4973 9808.7174 8590.31 11918.2339 10964.7624 7643.1916 65803.6075 14496.924 6030.8887 10179.0418 25808.8686 25808.8686 6364.0452 24789.6036 11509.5572 12292.7745 10443.6746 9928.0446 6506.3161 6461.6683 15783.4069 5759.7628 54032.9274 23678.4001 12235.7919 10522.7912 11634.3141 9458.8226 14436.5279 12250.0333 383840599 bend Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 16309.5322 11036.6193 2049.3536 5566.3835 39055.424 4898.1134 7418.3603 7703.1406 296465.5071 9234.3434 6349.8979 8094.6308 4458.4379 4458.4379 3840.9 9671.7205 16341.9538 6515.955 5202.3976 4080.53 2906.4398 3781.054 9261.3532 6115.7151 21856.4354 6669.9615 10317.8728 3759.8911 7556.3723 8986.2247 3063.6784 8917.7761 342132374 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 16173.5408 112355.7615 7740.942 8595.5523 3715.0171 13366.1784 26672.422 36845.0041 91674.3175 12676.06 13973.9905 4801.513 33403.9358 33403.9358 3845.9184 12849.6076 12821.304 12351.6735 9560.4392 9141.1604 36703.7398 9301.1633 17822.5476 13156.6962 9238.5341 11255.0036 11645.4893 31984.674 13659.6352 4658.34 21691.8673 320100706 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Desulfurococcus mucosus DSM 2162 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus mucosus; 10009.5801 6025.853 4975.8285 5437.8576 7710.7567 16138.9694 4457.0546 7068.6864 7448.4758 5742.6344 213562.4648 9861.8915 7627.8704 6164.7314 4294.7142 4294.7142 5546.9502 14510.9641 11007.1932 9036.5366 9611.6557 26660.3835 6676.7381 5442.1941 13863.478 7281.7845 29737.2291 9085.5806 14992.6132 4823.7104 6739.1089 6771.2758 7294.7611 18194.0427 289172475 gdh Nitrogen Ammonification NA Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 45841.5358 13329.8788 67948.9421 28001.3376 19475.2639 5534.8094 24216.1733 14770.2624 10675.8298 21900.3411 24051.5084 11341.5359 921329.0429 24124.13 21386.2217 22256.7814 12224.5774 12224.5774 17588.6797 47288.2474 33090.1088 82333.046 26493.2469 42304.982 16892.2708 11427.5974 44261.7955 12790.6077 55075.9792 35854.3636 32671.7519 20010.577 18352.9864 19397.968 17118.7324 562632.6485 284388653 amyA Carbon Cycling Carbon degradation Starch unidentified 4038.8458 4307.4957 2473.8242 2779.6346 4540.6823 4018.4432 5717.8075 2695.487 5757.2245 2913.6583 12055.5255 5870.3544 9486.3534 2472.4355 3903.8524 5747.9944 4225.2663 5438.1244 225043118 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 12179.4466 8282.7338 6708.4172 19056.6735 10378.8521 10503.8536 3156.651 30855.9699 17512.4924 6815.9053 149578.6366 11770.3486 9745.0597 5844.9594 7879.9999 7879.9999 9963.0125 18490.5801 15447.4397 19842.8015 14786.4606 710172.4594 7562.991 6543.505 20469.3695 8987.0775 25699.837 19776.1344 14445.9169 6862.5659 11531.8023 11489.2425 8161.0175 17546.2487 145607567 pec_Cdeg Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5718.8874 5064076.6514 3446.5721 4308.3929 99590.8 3925.9987 8028.822 8156.8574 6165.323 6165.323 7054.786 22897.6488 7752.6863 2583.2121 4200.4879 8289.7998 7029.6246 13432.3311 7724.5349 11845.1964 3323.0184 9965.689 19152.8098 15934.6339 133737732 FBPase Carbon Cycling Carbon fixation Calvin cycle Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 34471.4981 484013.7984 33814.9421 36371.7598 8497.3394 31427.7071 41717.9366 17884.2697 28406.4076 31044.1007 24927.9443 1118262.5103 35707.3338 35806.4131 29188.993 34126.6443 34126.6443 19885.9137 48479.4429 63303.6269 1269883.705 39965.5281 76018.9181 24770.2029 18024.8403 43394.0007 16756.6817 64501.6405 27870.1247 36726.7472 16642.895 24172.3533 34244.2474 17388.5096 76363.7438 323395633 amyA Carbon Cycling Carbon degradation Starch Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 5002.6423 8049.1881 9533.096 2341.9272 3793.0158 4274.0373 4738.2847 85648.8062 4546.0884 9699.2802 7028.4805 14366.7832 6607.8171 5781.7028 3554.2512 3516.4111 7602.4875 3263.2949 14731.0993 7199.9952 9463.9537 3480.3097 5651.0382 4764.3283 10342.546 8030.3055 11139540 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium ulcerans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 199813.3906 73889.1964 167749.6766 1923185.0856 810052.6734 92965.8852 49699.394 278379.6124 56119.4009 161424.8362 161719.3821 116580.4641 2340689.7831 146859.7483 276688.1393 259628.8131 104679.4257 104679.4257 89018.3748 217755.5113 72653.0589 179835.5017 231911.6502 184266.0657 120902.8024 54554.1714 110728.9851 194717.2746 225654.3991 124657.1631 133390.2456 67177.0882 81898.4016 125915.854 126650.3312 127870.5519 301798990 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 15344.5592 8879.5608 13106.7078 6922.9411 14463.9891 79910.5828 21502.5883 14194.186 208587.8941 11379.633 11451.5553 15979.4191 36908.2718 36908.2718 8556.7252 20426.5329 13932.628 8281.455 16010.1028 10534.3797 17752.9344 10774.9441 23354.968 15317.5693 35324.3863 31045.0132 20206.1847 5230.6204 15946.3896 25977.2015 17825.1438 18316.0108 116222345 heparinase Carbon Cycling Carbon degradation Heparin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 72303.5598 120507.1512 4483.6484 9929.6909 27403.6577 30259.3655 162780.1944 37209.2592 35402.9862 44882.8142 38113.3171 306003.8178 45154.9867 44241.4117 56386.8636 38920.4979 38920.4979 17261.7323 110433.2165 53495.9254 475002.9918 63836.8643 23456.1207 30900.0106 37706.5741 41172.2614 83975.2085 84266.072 50657.0175 64880.8676 41349.4153 31663.6028 36032.4844 84004.0771 68809.4957 222440834 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 68504.6594 22183.2103 16574.8162 27091.899 13288.3021 25425.8874 7338.3239 22645.6969 34197.8145 15076.053 575873.8893 27392.4436 120849.623 19649.0984 25523.581 25523.581 15217.2742 49543.3584 25479.8857 42502.6031 39746.9847 26181.0448 23205.4846 12461.2705 27897.4621 36709.8186 89911.1411 48514.4089 36927.6972 38172.1901 26101.2684 18312.8803 26130.8801 44111.545 27657618 chnd Organic Remediation Other Hydrocarbons NA Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6208.143 3116.9082 3178.4076 3454.9371 4687.5497 5704.0492 3215.0082 160359.3169 7804.8888 6556.2848 4684.5706 4684.5706 3898.6556 13442.4248 10334.606 10176.8053 15423.2384 9077.7256 2874.7713 3479.7645 10120.3027 4770.1348 16470.1554 7744.8077 13721.0344 4292.324 5580.0098 7799.539 3646.0938 6471.4274 299060964 proO Organic Remediation Aromatics Other aromatics Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 11717.6178 9780.8095 12117.5471 6716.9121 7262.0105 6358.1155 6406.7298 9383.4594 14143.2896 12637.1362 227680.9971 12443.6032 10629.7446 22950.9717 7581.6075 7581.6075 7504.0624 20785.7394 14115.1183 8077.3836 11246.3524 15769.4061 5470.1199 8281.232 15724.6156 5501.1895 9262.3593 4828.4919 15790.9774 7038.51 6507.3486 8721.7409 13526.295 12620.5191 323536691 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6844.7596 6386.8522 8922.1217 11382.2123 7751.4952 7762.5759 4603.447 5779.3687 8512.8526 5266.1398 205909.738 7295.0881 10076.7971 4594.2388 4594.2388 12851.1666 13450.8459 10181.8211 10125.1935 18371.5994 18732.805 6144.4922 4524.3438 10199.1153 5016.3965 23783.4037 7191.3494 11371.1724 5163.0375 8542.6313 8807.3711 7965.1776 12841.4246 71846611 quinoline Organic Remediation Aromatics Polycyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 3990.484 7673.8684 4739.2688 29926.3187 8131.8141 2512.9209 95070.8156 5867.25 3665.7161 2072.346 2072.346 4522.3694 9442.2511 5353.3399 6213.1556 14670.7927 66457.9947 3852.0949 7774.4306 8292.2771 8098.8432 9993.5511 3939.0163 4178.7463 4433.7001 4230.5791 6170.4457 168700884 xyla Carbon Cycling Carbon degradation Hemicellulose Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 26043.2226 8507.8971 6013.4149 53948.093 4195.8045 4204.9302 5029.9352 88338.4226 5993.6626 4289.3915 14509.4844 6606.5887 6606.5887 83763.1884 8315.3741 211525.9812 4930.3973 123530.6851 3690.358 3664.7853 3988.4567 8011.3966 13232.0972 5118.2307 7252.0518 4668.3225 7084.6967 17831.1928 300114649 mer Metal Homeostasis Mercury Detoxification Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 7237.9318 271916.9352 35062.8637 3288.3212 3503.9365 11828.2083 5117.7792 12449.9689 4423.1605 170862.3378 7119.9198 15101.021 4937.7602 4209.7637 4209.7637 3288.4861 7251.2249 5777.5166 14898.1033 7119.9927 7694.2351 3610.7073 4428.6896 6689.6263 7973.8452 17117.051 5510.4982 10174.4484 4404.0789 7886.9068 11505.3806 9526.0546 11252.9584 221157081 catechol_b Organic Remediation Aromatics Other aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 113552.2338 40320.1318 23985.5161 36986.9226 14406.9698 43020.2076 30306.4834 64502.3791 40969.267 47825.8989 53590.4649 776946.1753 41626.8549 68055.7944 61284.697 65168.7256 65168.7256 41280.7774 96989.4551 35159.9383 30439.6195 48339.1082 54013.8172 31282.2915 51885.5039 48984.2125 60353.674 82420.0684 45707.6967 81551.8771 30588.5918 54365.4771 41343.5799 51518.7038 55430.3063 41395720 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 6776.8916 29155.991 9061.4447 9029.2039 4146.9966 2897.19 4541.5337 3914.0898 5489.1467 222397.9808 4396.7285 7050.3917 2954.816 2954.816 9034.9349 6840.2226 3186.535 6961.4284 9407.2825 12258.4957 14163.6046 5693.4562 4583.2899 4626.6608 50451.71 4303.8837 343764817 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 5305.8642 4218.7261 4087.7464 4310.5017 4456.3748 2468.949 2141.9874 1906.2193 2475.0138 2040.9419 227438055 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9031.0844 5190.0956 5490.7084 12817.3877 6095.0588 6311.1098 8431.7474 9036.8861 4622.8143 194030.8069 11162.3682 7995.5862 11493.6267 5034.6139 5034.6139 6267.1704 16386.9673 9051.8009 53952.2157 7513.9304 11307.8671 4860.7302 5960.7171 13065.6253 6449.4496 19300.0327 5493.1148 11855.9831 6248.1772 6207.7588 8812.7228 4649.2847 13067.6389 229589790 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 14520.4953 7227.4364 15437.6285 36074.7598 12562.2075 9402.4667 27053.9844 5940.6143 11288.5173 11239.2619 9742.2386 304008.1359 12861.0344 13959.8656 21298.9819 11428.9348 11428.9348 9526.383 67699.3127 14040.133 9637.3818 14934.6903 12813.2264 5418.9534 8366.2997 30739.7894 17058.5084 54777.0902 18724.0334 25666.6956 20596.564 10441.5912 9664.6356 23592.7041 11778.0542 66845873 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 80537.9523 22666.3651 324469.1721 55261.5732 9384.6889 7488.129 48965.5845 8885.8986 16909.7464 18655.0316 28435.446 675136.7124 21531.0992 28310.8173 37178.4932 41021.3047 41021.3047 16768.1814 100650.3684 15215.6448 55520.7421 36473.3992 48130.5101 22637.4638 16666.306 20792.3636 17608.6081 102322.9537 44462.2007 45175.5536 29749.2152 19766.975 20450.7498 12355.9634 52921.4287 260578061 amyA Carbon Cycling Carbon degradation Starch Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 203862.0522 63870.3123 96534.6489 18282.9283 28432.5805 19326.0244 32273.9492 170911.8536 246076.4967 63458.096 77015.8195 108824.5079 1064892.5476 130162.791 180281.1944 137209.3672 119759.8502 119759.8502 44455.1103 143433.5784 74546.0061 124402.061 127388.351 115579.3415 84463.676 89714.9135 93681.5496 72999.0823 221210.1942 67731.4048 100261.1112 51882.3613 86305.7271 69535.4671 42077.2994 262890.5275 50120197 arsc Metal Homeostasis Arsenic Detoxification Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 5730.9478 15676.8482 6236.001 7988.6132 7729.2763 7074.0663 5488.0137 177388.388 36521.024 9785.0752 2387.5639 2387.5639 8869.0846 9410.9391 10780.0147 5654.5426 9981.8573 8539.4448 3814.2667 6141.6245 12020.0466 15726.824 38171.1169 12596.1444 10704.7027 8271.6395 4757.2319 11478.3831 7289.4529 9170.2848 319777942 exaa(moxf) Organic Remediation Chlorinated solvents NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 49090.6471 130464.9835 39097.1114 92037.7076 22571.968 162869.1793 29923.4691 47581.2746 18038.7971 206016.1771 41646.411 767375.2049 27551.6947 55975.2198 75806.015 35604.1017 35604.1017 34634.8971 50670.1239 30889.1545 32892.3311 48845.7552 36536.5483 23217.2394 24405.3326 54510.1616 24385.5575 106286.1567 101864.7339 51813.3715 12064.3643 35199.4965 51586.4399 34071.2578 26834.2736 323317832 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 66924.0259 21899.0536 21557.319 124740.4912 14846.0576 351037.3669 44161.528 11420.2068 26133.319 33695.0175 60442.3645 487950.5282 22321.8299 112858.1323 41467.2603 31398.7247 31398.7247 57003.4243 117515.8913 23141.6725 25016.6104 35274.0883 18020.8847 13133.1931 21511.6364 26104.3026 14098.618 68346.5001 38574.0426 52505.8398 31147.8801 19719.8009 34308.7243 82454.1751 21000.4065 153887635 urec Nitrogen Ammonification NA Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 723984.1185 368038.2997 334397.8883 1338707.6677 1004179.1649 366088.5941 384734.6016 604211.2972 455462.3868 574545.3371 396902.625 337611.6892 7882763.9469 533138.4373 557548.5748 887905.2805 596149.7796 596149.7796 254737.4045 400581.1861 289099.4097 327591.5631 364465.27 516726.3571 222784.4801 212227.6213 413115.9264 244024.4124 746536.6208 705112.0322 435622.4339 398802.8358 198921.5474 231701.5069 195667.4334 542377.2056 365893995 SoxA Sulfur Sulfur Oxidation NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7698.7859 16630.7416 2062.2527 11370.5827 6753.3004 6014.0205 10562.7388 16776.3799 96163.3431 8350.5505 18932.7775 7409.7275 8343.0756 8343.0756 5310.9921 16358.5406 6819.1892 3903.4769 28145.6407 7143.6622 7599.4882 9836.3933 14809.6558 5858.4765 17181.7707 25277.2112 7848.5114 3362.7551 5599.6558 14096.8556 6372.1276 7358.8081 239932330 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 10592.2006 4289.535 10635.5764 10219.1243 2817.2688 83654967 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 199901.2761 34187.3508 594274.6824 337996.7554 72247.9597 67722.9758 182969.7535 196156.3314 175178.0273 127460.6168 187896.3541 188739.6108 5875132.9935 94681.5265 207619.5381 327290.2066 172753.5736 172753.5736 138597.1075 224810.4053 78352.0364 303625.8501 194122.9442 211713.2717 119914.6677 95239.0251 158763.3798 148071.5099 417582.6918 87222.8996 185570.2662 106366.7224 156023.174 153010.8227 129405.3792 177493.4164 383210494 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7562.4082 7086.3134 7922.3942 3441.3627 4354.9467 5880.5371 4557.2504 13550.4708 2798.0576 2798.0576 2756.5715 8701.8567 8511.0934 5653.3882 3253.7732 6048.7491 10597.2775 8120.2129 5877.0049 2309.7234 5333.0496 3399.3109 160917461 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6777.7748 7767.5881 4719.4166 3352.5876 2954.0896 5387.1093 5084.5397 3945.8476 96448.1343 6142.7128 5083.409 11630.5393 11630.5393 4358.4028 10500.9988 7189.7654 6973.7283 7275.8591 5975.6236 2671.3721 2873.1616 25436.0972 2582.7683 17498.1636 7535.7657 12089.3038 2423.2863 4482.724 5539.3585 6281.8678 9018.9855 315497676 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 22126.6987 13338.6589 19553.34 16131.8098 12636.9423 44400.062 19377.9763 21634.8784 21837.1759 18246.0234 15360.4223 307520.9594 20995.4184 25284.846 18012.1678 20664.7307 20664.7307 23540.7137 34473.5268 15977.4067 27802.1179 28502.8812 16902.0671 10391.7398 18491.1439 34328.2222 29220.3476 38039.9722 19475.0537 30553.0539 23904.183 24250.5809 22992.407 15455.7661 30326.4979 302519575 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 148723.6789 784746.8399 21043.039 7995.0789 28482.9377 20756.8282 24676.0689 114337.8886 28443.8281 49340.4029 920106.718 42376.555 103080.4943 39984.1806 19414.1223 19414.1223 32495.5863 391516.9686 23130.8513 74832.2419 75362.3305 108285.7286 15438.9219 17781.1182 19214.718 91481.9385 57276.6548 35626.1551 37886.0594 17598.0927 21141.7835 31380.8295 11897.4724 57194.8601 365850615 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 24244.4192 5555.6171 8142.0956 15949.8053 10624.0952 5940.6716 167795.9558 11790.6158 11225.9633 9652.8885 149755.9656 8685.0316 37290.4229 3918.953 3918.953 5941.8732 13715.4819 9524.2813 8678.8116 9910.9341 10639.7303 7148.701 5091.2056 14873.5228 4909.0919 17491.4688 6957.0214 13563.9172 4518.1468 6306.0984 9537.7497 3782.2291 13526.0563 325983291 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 16274.2776 19715.9808 15612.0594 29362.4805 16640.7221 7371.0443 12686.3782 7767.9075 14614.8256 14631.9356 8474.1105 440964.1489 13967.1023 14022.5658 18224.9141 10696.7677 10696.7677 11033.8165 33490.5816 16139.4134 50553.7053 17789.0624 25857.6031 7591.7236 11032.2511 43701.2066 8516.0321 28366.6482 15410.37 21864.7271 9143.954 11638.4583 14861.1359 8975.4267 22867.4493 8843721 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. TSN101 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14119.827 4523111.9881 823646.5777 3410.9616 4065.9182 64866.0524 4269.3859 3238.5703 7594.8541 6213.6882 4282.4803 2395.3688 3103.8681 6454.8891 2470.3017 8886.8927 4437.0344 5942.9497 4057.2894 9346.1824 4847.3093 2354.8005 359260.3721 169777559 invertase_fungi Carbon Cycling Carbon degradation sucrose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 15540.2722 4224.8041 2636.2534 3326.5046 5885.1359 9809.0635 9112.9267 81361.4388 6822.449 5723.691 3216.7101 3216.7101 9090.3513 5025.8899 163854.7917 21978.8311 7241.183 3916.9857 4293.6353 9174.1157 3594.8509 11104.7133 5602.9567 7087.0928 2259.2685 4387.3606 3673.3248 25936.7142 7264.1785 377563408 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 32186.6064 20434.7687 13009.0735 20099.5052 10840.8863 10980.2268 8299.7055 2341.6292 9218.6767 12118.9829 26958.9074 145670.5675 12841.4306 18274.4131 31178.2745 20622.4934 20622.4934 14053.2899 23459.0432 11540.5378 12946.8003 11360.6808 15511.5878 16700.1765 11403.9154 23376.8046 6927.8164 26173.3128 24908.7757 22953.8359 10345.9415 14564.6187 12408.8457 8662.5579 30380.2462 387875096 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9667.6483 42958.2511 10770.4828 4818.5718 3174.2017 24085.0196 91690.5751 14205.975 318581.3872 7974.6497 11943.2004 10001.7766 5923.1122 5923.1122 23127.852 23081.1657 6018.462 12693.54 8671.0175 12533.6959 2846.3423 7388.791 131569.3745 3034.2971 15925.2702 12198.1566 18346.7181 6802.4146 124685.1434 9192.851 9051.9066 11432.6175 89512818 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7198.9416 3861.4933 9266.7656 4038.4618 8077.3285 71526.3257 3790.4125 18203.5455 22076.0474 2329.8363 2329.8363 4279.4092 14676.8067 13924.3534 13771.5498 2213.6667 5028.3974 13935.25 2746.8839 10409.1331 6162.8633 7658.3551 2775.4993 19217.91 3225.9782 9134.2497 260216268 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 16135.7059 16250.4316 7638.4968 11840.1094 43088.7213 10077.7104 7398.0738 7728.7929 12815.9493 7294.3339 172166.6709 11854.5005 16572.7737 19832.6584 8093.6502 8093.6502 9690.4777 17633.9866 8705.1244 11813.2754 22411.4027 14820.3256 9943.8823 11054.7631 15683.2329 11163.0528 30699.6514 14664.7809 20403.7676 10368.7457 7733.7786 18682.1637 9400.8466 18152.1874 260904008 cmci Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 139492.3352 58377.4517 50922.3833 43165.737 5864.7596 20509.8665 27928.7837 26019.9637 43278.037 73198.8065 49835.704 692814.6824 295059.6942 35200.7018 78665.3464 23521.6998 23521.6998 21574.2747 61346.2276 31603.0928 62300.1291 95524.3807 35335.5903 65729.3824 23261.2257 36839.6431 50673.5567 85557.2718 43125.3778 132669.2952 24790.4124 30949.9838 53786.8113 36139.3388 45836.1892 16041067 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pycnoporus coccineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 9058.0117 2739.7493 67964.9905 3793.7793 4008.4318 3601.122 10347.2501 7010.2425 1772.4944 359305462 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 15806.7653 7532.463 8544.2254 9103.5742 4019.7111 35236.368 17847.9377 6983.4062 130975.5959 4687.6986 14740.4043 5580.2975 5355.5144 5355.5144 23353.0284 14351.001 50881.4367 11436.3872 15831.0323 10086.4485 8245.7332 13306.8484 14324.4091 28502.8146 21087.6563 7848.1616 13744.9915 6829.9799 6364.6442 16191.8224 16464.7937 6323.8108 91802555 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 179350.1935 26415.8856 130137.2473 132643.9186 240042.1304 80778.8092 133318.1112 76777.796 113284.561 113299.2307 191236.1343 86924.2804 1996712.6659 395537.4242 347174.8081 1197073.8404 165370.3324 165370.3324 63824.7055 224958.7122 110573.2732 636865.5045 226782.9219 181875.2535 102745.1691 77478.1145 136807.1248 101644.5566 348676.0224 99352.4533 223551.512 102076.6085 113051.6956 118230.2271 105139.0587 164663.5059 254444969 rgl Carbon Cycling Carbon degradation Pectin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8262.2512 7801.3978 8648.3712 4033.0844 2619.2656 2836.4214 2926.9658 5750.222 3576.5908 67561.1003 3874.925 18444.7357 4930.6614 2070.6186 2070.6186 12979.9665 8568.0106 5350.234 5876.0887 4783.5432 13238.9736 3782.6302 2574.9688 6267.4544 86566.2943 9264.0248 6002.7013 8680.7398 2258.0869 4219.9022 7542.9957 2240.1303 5784.0719 74053810 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4031.4846 7225.1468 2547.9396 2506.5406 3383.5704 4611.2608 2522.2444 100046.98 4445.4242 4207.8767 2650.2614 2650.2614 3554.029 10602.3288 6299.2366 6274.9181 5429.0143 8720.9618 3883.6639 8253.5734 4633.3041 3981.0637 8726.5408 2791.7594 4391.8785 4708.5879 2874.8965 55690.4357 73538235 bend Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 4122.311 17135.9578 9673.3202 3144.6444 5564.8457 4755.4754 57630.1244 7985.3205 28396.4579 4707.3211 4116.4259 4116.4259 7182.5017 8958.6379 5330.5665 6590.1507 2040.7097 4161.2877 5230.1468 3073.9398 8190.3168 5530.6011 2878.7592 2867.5284 7386.4239 3879.1967 16656.9033 363713973 dehh Organic Remediation Chlorinated solvents NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 8473.6877 60701.29 10385.5465 9343.2885 200393.1903 11745.032 6394.3887 6601.466 16043.1923 142527.7299 11518.3468 15322.045 5411.5135 7000.0728 7000.0728 5566.3457 15067.8094 10763.4468 9664.5797 9204.1657 4213.6273 6926.6987 23680.4787 5867.7676 19262.6411 14307.9671 9580.8209 4403.5405 19580.2049 7666.6423 16665.2528 43171.6259 345003160 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4286.104 21771.022 2061.8249 2916.9945 4019.2518 85476.4161 3413.7961 5795.1275 11841.4992 6210.9493 6210.9493 5548.396 4292.3409 10647.5289 8622.2764 5415.8994 6685.7572 2474.1107 2736.2573 94618.6725 323452335 mer Metal Homeostasis Mercury Detoxification Aureococcus anophagefferens superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 50114.2312 10101.2172 7908.9239 12943.9352 9065.6693 65298.1504 18090.8541 9370.7814 18784.2221 22240.4324 15829.7248 536160.3086 18586.5056 279895.5349 17204.9213 21458.9437 21458.9437 11353.392 41564.9162 18410.2354 13947.8795 37822.4234 24951.7393 19381.6631 16547.9803 41646.9775 26468.1774 51194.7254 31080.009 29912.3379 24019.3035 16679.9409 16609.9312 22060.1365 41338.87 403719106 nhh Organic Remediation Aromatics Nitoaromatics Kineosphaera limosa NBRC 100340 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 9783.5407 36848.0468 46310.6188 9124.8917 47346.0352 5190.0371 7338.1497 4662.1747 3675.0224 5365.9764 9614.9114 6431.0047 103010.4494 9388.2981 7398.1402 73609.6148 13477.0861 13477.0861 8528.2734 20696.4943 7306.2752 7122.3471 9008.4078 10398.881 10015.3346 9794.8785 65148.6633 5415.6649 36005.8758 36954.5943 26153.748 4860.9611 7261.1853 13261.6492 5488.1832 8524.0073 328809412 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 8550.1786 2870.6918 19020.284 10484.0887 5175.563 2445.7879 14584.0331 6824.4524 3106.4002 3106.4002 14879.0972 8454.8697 4610.7023 4992.6861 4446.5079 2813.833 4578.3507 8386.8115 2934.1503 8820.7093 7329.3177 2705.0809 4315.7475 3316.7284 5094.8353 6226.2329 328809555 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 13279.6496 10226.7218 8293.8152 12722.8102 17189.6228 23396.884 2492.3517 51121.3619 3851.8915 8350.3556 20876.9002 24569.492 177241.8819 20873.3508 49542.5116 249821.0423 13233.3978 13233.3978 22732.0051 27607.2539 47842.2225 17846.6841 30208.8812 9575.6538 31506.7359 25870.0831 18271.3772 19137.3216 131655.4418 17519.2024 46623.5347 13092.7028 19126.0366 32784.9063 10588.998 6821.2029 334344633 camdcab Carbon Cycling Carbon degradation Camphor Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 54937.3297 131271.6197 5501.6793 23931.4013 11793.1986 7973.6285 37183.7639 18435.1483 40872.6045 27065.0674 35853.5896 596780.1782 24378.1935 36602.3479 42112.6276 38580.9131 38580.9131 29871.3249 110711.6785 32269.3121 24735.4431 60193.5717 41559.7055 64171.348 41112.8369 47827.1145 27227.3692 82929.1444 52722.7315 45446.7954 33319.4808 37968.895 61732.9341 41871.582 30325.2907 255921001 ara Carbon Cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 7240.2282 12007.0011 24318.4374 11250.6741 3968.5933 4947.8383 3011.3154 5876.0617 7042.3917 4377.2755 185952.3097 5472.4005 10006.1866 4972.4138 3891.686 3891.686 6770.9805 12557.6822 6923.5694 4580.787 4895.9142 5047.3564 3287.187 12877.2902 20842.7297 3270.9779 13384.9883 7766.0922 15218.3444 4909.295 6262.1001 7763.6765 2617.7704 16429.4295 69936847 urec Nitrogen Ammonification NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 34246.7969 221065.3505 33110.045 37930.0902 8794.1958 90407.1789 30144.8251 38098.4706 76629.7875 46019.1178 40994.1465 1337032.9705 33526.7682 31776.9486 34564.6585 43488.4866 43488.4866 21065.2618 39452.6031 23282.0077 28376.3667 65098.3605 46983.0491 34609.4905 30378.8527 45783.4382 22283.5682 25893.1058 18542.1686 38502.0736 18939.9253 25737.4523 47051.1428 34202.4308 34983.5302 407198260 aln Organic Remediation Others NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 28528.09305 17036.4772 32293.0256 60795.5709 42626.184 8361.4295 22329.0407 18174.7027 20605.52395 32260.13595 34541.231 14824.29315 552447.4883 66561.9472 28101.53505 24050.6241 13305.40685 13305.40685 19825.1181 46670.62085 21604.75105 26996.1036 28323.7574 37174.21535 17116.5259 26851.32725 30792.24335 26168.232 115092.20685 50520.2287 29964.8964 13385.5279 22529.1572 29569.9686 14833.72765 34515.00565 226304672 linb Organic Remediation Pesticides related compound NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 233046.1065 751745.8895 667627.9107 102799.172 65017.394 27545.1708 65549.5659 123877.3001 157833.8947 101705.1771 132392.2463 131187.4029 1317513.0414 123186.5734 159679.1637 308646.5054 154881.7854 154881.7854 104271.0091 214541.9185 70666.4114 198774.3481 139659.7136 209777.0902 92611.8166 96449.8892 151397.2883 114372.286 600135.0972 142689.6113 209112.9791 82593.0258 137790.0999 143342.9747 113083.9533 241841.1293 171060987 cellobiase Carbon Cycling Carbon degradation Cellulose Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 21332.1131 16263.9446 23026.8026 19815.8632 6771.4817 45347.3149 14369.1146 11108.8386 13307.7846 13756.8912 15497.861 287152.4537 16070.0559 21173.8653 31301.9646 40814.5225 40814.5225 13961.5244 20274.6 15601.7323 14159.503 22803.3146 25462.4428 8583.0664 13366.8683 17973.9125 16208.4588 37955.1625 11925.1054 23013.928 8937.7727 10875.0988 13212.8335 16675.1263 60804.8328 113477304 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8702.5328 11588.9259 8312.0977 11816.1572 2705.8454 8270.8749 6652.523 3756.4226 6765.1408 5493.7539 79880.4284 6725.9056 13524.6703 3122.4336 3122.4336 5245.8339 62808.5557 14425.063 5180.7752 8859.2085 8322.577 11398.1096 4669.6379 8729.2744 3478.1628 18798.3402 12764.8344 9772.8259 3033.3482 5974.4738 6828.5714 3470.3323 9589.097 345002816 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 11404.9654 17157.7621 8880.2896 10373.7623 11176.0009 6078.1924 3106.6933 9171.1331 10485.7288 8015.8311 90222.5978 7421.1524 19934.5753 25921.4265 5627.8351 5627.8351 6254.2778 6747.7497 5865.3727 12331.5203 21384.328 11462.8248 2581.2308 6318.8088 16074.7812 9919.4328 11166.0091 17173.046 32380.5242 6075.971 8537.3431 7230.1745 9435.7703 283333.1864 1150564 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thanatephorus cucumeris superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 4935.6747 2081.4586 3787.5901 3103.2779 4618.8477 78495.8896 5991.3247 6673.3193 3352.4504 8269.1462 6753.3996 44763.6888 3415.3385 6724.5784 2609.4436 9099.3502 5388.766 9883.7155 1838.6643 3480.9983 5148.0507 2361.3842 7439.5782 346992750 ppx Phosphorus Polyphosphate degradation NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5451.3796 4308.5732 6220.5327 3201.49 2492.5099 5389.1605 6976.6982 2887.6651 91076.5352 6666.9149 7953.1689 3449.5448 3449.5448 4666.0553 13865.4616 9181.8181 6377.6427 10525.1815 9177.9704 3044.8675 5475.4863 8904.4814 3869.6988 12673.3803 3696.8519 9147.5192 4506.8819 6059.4696 6044.9771 3958.4116 9380.4941 118424415 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23562.6271 5272.7905 19903.322 5285.8833 230476.529 5613.5964 11678.6878 14406.8228 7238.2168 254132.4135 8863.2859 25135.5144 7545.4978 13895.0158 13895.0158 9039.6342 32623.8385 15532.7722 190851.3523 46147.148 45029.9384 21828.2991 8496.6882 15469.6687 52364.9451 72419.2543 7805.8098 14124.4518 6358.4097 13457.1783 14930.4252 12340.9836 19264.0043 212171502 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17997.1147 873501.2158 8848.263 13404.1937 52202.6952 12896.5998 7087.6743 9130.9929 4704.6223 11809.116 15692.4965 7840.2724 269543.8416 16727.3251 13043.1305 13204.1874 9831.5913 9831.5913 7642.9573 24889.1883 15787.9817 11004.7166 13423.9386 19228.9979 7480.7237 7591.2879 28242.1932 13237.5332 33903.4627 20637.1717 27764.6324 12761.1793 13625.2693 13148.9353 11631.7122 16259.5569 23330206 hcab Organic Remediation Aromatics Aromatic carboxylic acid Sphingopyxis macrogoltabida superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis; 18957.2953 28811.9549 8181.4426 132355.6186 7441.8073 17291.6292 10664.4401 5152.9855 10806.3743 16393.8892 25360.6096 272422.9581 21354.5014 12853.787 9943.4022 5138.893 5138.893 10737.8603 17000.2376 15354.0585 12253.7952 17555.3359 146879.0996 8105.0642 7786.9171 15167.8839 7100.9345 21367.2957 12758.0663 14395.9469 7533.9724 9159.3 11709.1133 6536.1543 17608.9592 398307757 b_lactamase Virulence Antibiotic resistance Degradation Bacillus vallismortis DV1-F-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus vallismortis; 6376.7606 2401.8167 2319.8463 3893.3037 70966.989 38236.8491 4487.1746 3750.0288 7249.3495 4976.2862 5161.8911 5587.1128 8446.7837 2097.8074 2128.8617 4763.6493 2860.0788 7366.1531 5214.8702 2214.7409 2880.418 3914.3859 2418.2295 7053.4962 358445062 amyA Carbon Cycling Carbon degradation Starch Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 3823.5712 7422.465 4390.4025 4362.4671 7425.3987 4265.3405 7478.2188 239839367 amyA Carbon Cycling Carbon degradation Starch Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 51967.6229 42873.9907 103092.1349 32451.7207 55989.5599 25120.8292 356341.9081 73679.8888 35442.313 33649.4384 46274.0544 50823.9026 725805.329 56897.0932 298303.9151 60596.0678 51634.7131 51634.7131 41667.8878 66294.7706 27595.1522 51051.3043 341388.36 49358.1292 31224.8639 27390.4479 50741.3175 65927.7092 93227.5193 83873.4253 71980.335 20854.5371 41663.9514 45539.0972 26193.8011 73289.9956 309812613 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 127587.3929 20435.698 13429.5518 301306.3145 24892.8137 40973.1001 93106.4418 48541.5107 45696.5302 124089.3351 109396.2536 656127.148 85226.4208 46104.3486 99359.3747 55942.6639 55942.6639 42974.9635 141682.4765 36496.9302 76492.0717 78523.4264 36503.2711 73166.8327 61906.2856 45305.2651 43314.6336 180487.4093 54330.3468 75441.6349 153364.7525 74656.4834 63397.2172 65484.15 104373.6201 260850322 mnp Carbon Cycling Carbon degradation Lignin Lactarius fulvissimus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 10452.6627 13401.1381 6209.6484 12768.293 17394.055 4452.2642 7356.2034 7647.0085 3963.4353 6792.5498 11564.6222 5613.619 243362.3163 7601.4956 8949.1377 8308.114 4998.5127 4998.5127 6744.9635 12678.3997 7604.0657 11137.5895 20745.0198 12893.0061 3197.5831 5488.5824 16003.4586 6054.4478 12646.1222 13825.7676 16322.5183 6340.7519 5503.3459 10091.5611 6302.1177 11427.6822 228768642 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 260969.7499 2088.2007 38595.1522 6298.3753 75708.6858 4868.3012 3428.1227 2725.2187 2725.2187 19804.7475 7601.6388 5801.9046 4055.8973 7110.9162 7351.7082 2405.6247 5531.9353 2736.4624 11615.3857 5762.5723 10867.8934 4058.5554 4382.1804 3331.9253 15598.4215 4441.7993 359822858 cysJ Sulfur Reduction NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4285.12 98974.4915 2434.3311 6875.6464 9528.3683 5942.3864 4128.869 22104.2722 3262.0993 4368.9805 35639.6645 3001.7532 2858.2994 4534.7449 2218.7041 7025.0001 89941453 cellobiase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 31462.5991 20992.1935 21936.1756 26558.6877 8003.7733 170975.3103 204107.6214 23462.4486 17143.8787 24264.9099 24905.4133 297241.2993 30496.8864 24800.2347 10048.0245 14459.9833 14459.9833 15793.8714 65747.5833 29427.2395 62782.2286 47468.1564 34838.032 87397.1033 13106.8027 19487.9742 12511.9447 71398.5803 35469.1243 37107.3322 13161.3829 29961.4948 17027.104 13536.6231 427376.5475 118051441 urec Nitrogen Ammonification NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 18727.2707 21151.1661 10755.1055 13098.7014 10593.2496 7124.9409 5883.2993 8073.6668 10248.6952 14282.5347 211013.3675 11149.9597 19762.6557 4035.7409 19479.3183 19479.3183 9074.968 26186.4303 17214.9391 9959.9474 9651.3694 8042.358 10921.3934 10570.0683 15759.1354 8602.7727 36444.9646 7992.2622 13537.1826 9154.3891 17478.9077 34102.1699 16056.4114 12992.6577 212555207 cysJ Sulfur Reduction NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 5195.373 6047.5805 3562.3897 3589.0982 4750.942 2870.7524 78845.9587 3902.821 4101.9138 3858.6178 8415.7337 7021.4092 5548.2429 7509.3366 9861.7545 2664.9536 3763.0202 6375.9004 2383.8224 13108.1186 6216.5609 7660.7042 2519.1445 4114.0018 5024.3141 3233.8411 8173.8315 363714682 ppx Phosphorus Polyphosphate degradation NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 43843.6637 14681.6315 36037.4877 32519.6281 15891.3341 20950.2808 35993.0545 26219.0417 35441.2117 53132.2504 17137.0423 689051.9293 46268.7732 41473.5291 68918.0243 43444.7966 43444.7966 38225.647 44565.475 35081.3479 114814.8532 44799.6177 52019.159 21233.5484 19560.2167 38951.9031 24421.7699 81558.2569 39698.9398 46481.4112 21285.2887 27902.9878 27720.4002 23054.8208 54958.1998 83844958 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 4275.473 10374.9078 2936.1364 3648.8389 5222.5158 5052.8873 5269.8669 7976.2722 7976.2722 6328.485 5796.5791 5600.1774 2759.7641 4699.5924 11071.9185 6796.4472 6565.9325 2103.2317 4053.1713 3650.1161 3725.7461 296091697 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 16527.2303 25233.7895 5322.1847 3811.5774 5275.4402 7339.3383 6487.8569 5814.4385 13319.6381 82687.1627 10593.226 13956.1011 31534.6796 11367.5517 11367.5517 6037.6978 15452.3894 6234.2233 21710.6188 16854.1741 5483.0979 4354.526 5372.1812 12553.8641 10543.2042 14162.9529 12712.4073 10635.6838 6460.0832 14101.695 9186.22 5726.2135 8811.5482 206602150 ccl Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 6011.4857 8641.9717 8657.2816 2459.3045 3763.7032 2360.0202 5025.3468 6994.695 71967.1865 7369.9217 6176.7923 8276.7785 8276.7785 12124.3646 6793.0081 6496.9719 5822.5601 13657.3764 5036.4969 6172.5075 14762.2399 5942.4214 382881.5201 9702.2644 8654.7212 8436.8542 3538.9411 5254.3984 7281.7219 13371.6031 328884789 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 19373.0007 15435.8007 23738.5372 17341.6999 4944.0905 15501.587 12314.3741 15536.5077 49634.5062 25300.0868 24522.0185 466560.9707 21684.944 23177.2658 15971.8664 12704.6574 12704.6574 16027.5726 34245.0137 23019.0098 23602.7925 28575.03 27351.267 11754.2031 13299.7467 27761.7919 10065.0883 47237.4057 19265.4067 29198.903 17255.6018 17101.9266 20851.4845 14632.4806 46941.5546 119371712 narg Nitrogen Denitrification NA Propionibacterium acidipropionici superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium; 23776.5379 9215.7179 5088.1323 61952.6836 8515.8166 3612.2531 78547.6012 4152.4944 4344.5207 11755.7481 5764.1119 131744.9715 16766.5804 28302.6585 8021.931 15320.8537 15320.8537 9776.3966 25171.3748 9311.4715 5512.8265 12870.8028 21530.5578 8214.9103 8603.6865 10729.4858 10862.1666 21507.5918 11649.0783 18791.2277 9896.6499 12437.9779 18657.7585 8972.8741 8778.3155 165877209 dmsa Organic Remediation Others NA Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 5356.6119 11381.7679 22363.1179 6727.5426 3440.4132 4523.7254 7163.8686 9015.988 4418.1822 156592.7419 7969.3323 4647.8313 5514.71 9200.9831 7058.025 6661.948 7447.8123 7055.0817 3689.008 4544.9702 10009.154 4702.62 11552.7071 10450.7368 10523.4895 4314.9931 4778.7167 6630.1019 5110.2141 6139.4094 214044190 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 27322.61 17006.4257 17613.1456 23722.8464 15073.8455 15277.1147 12263.4322 16801.3246 21785.1004 10743.7998 271713.859 21111.0748 24259.317 10386.1163 10320.6342 10320.6342 17479.5684 25886.4795 23251.6201 24212.2928 23664.7229 25077.0091 12724.7525 13225.4129 26864.7158 11059.503 34341.0744 25124.121 23588.2617 11289.663 15186.5681 20453.2777 9955.6271 32468.1776 333382506 RgaE Carbon Cycling Carbon degradation Pectin Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 9474.6862 3848.9364 5222.3938 398355260 one_ring_12diox Organic Remediation Aromatics Other aromatics Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 9180.8339 9166.2232 4895.568 4394.7252 4787.9596 11263.6347 5158.1461 279103.9038 8813.7751 8410.6461 5982.7821 5982.7821 7639.9178 15156.3355 13828.693 16058.2203 7094.6358 12490.5983 4362.8174 4962.0734 9482.3202 5160.7133 11912.7541 7879.2421 8381.5736 3266.3124 5318.3706 13346.3212 5141.0602 6719.557 62003575 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 50511.2604 82306.7146 23767.067 32247.2325 26002.4358 16543.9754 24782.7917 17516.7764 41984.2748 22489.6217 68085.1974 32625.4634 559247.8506 31714.783 37433.1918 36089.7791 22912.1053 22912.1053 22180.8051 43205.6317 45432.5985 42919.1836 59244.3716 42343.1975 22700.3854 15637.0065 45882.5047 16605.1953 86389.7186 26414.9075 42775.7031 25288.3123 33059.4941 33964.2613 22199.1092 236199.5547 213524230 cellobiase Carbon Cycling Carbon degradation Cellulose Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 130765.6978 10284.3938 61620.2439 60339.7583 153978.5957 19036.3865 87803.0149 459257.5369 52270.4122 145350.0517 412580.112 90676.0637 1200971.3458 49480.7848 85346.0712 162135.7248 174679.3478 174679.3478 96456.1006 132251.3215 83194.9485 106447.7747 180562.2314 62405.8979 81036.6493 78371.3578 74484.2164 66828.5612 262954.8317 87425.9673 100982.6728 47344.2131 93892.1088 105049.7967 105062.1191 132110.9185 335420498 amie Organic Remediation Aromatics Other aromatics Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 17631.0561 11546.3989 24809.9095 17333.9396 191151.989 11664.2206 7744.1622 17465.6507 10990.7694 21517.8722 12696.6396 17078.5713 288671.344 28103.9305 25155.4826 71336.4113 16728.9374 16728.9374 13960.285 21966.5601 13804.5841 16752.2611 39508.1117 17238.4789 11114.0209 11342.7139 21894.2624 8166.0556 84151.3589 29805.145 23632.5929 16388.8105 16142.5995 152530.6406 16689.1616 11704.7732 62512297 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 70809.4957 17054.4149 248346.7355 47066.7098 217495.3795 32595.2142 24388.1632 26459.9676 12671.2797 29630.9939 27965.2182 31231.5131 622905.7743 32700.1786 108956.8946 27370.1364 69245.926 69245.926 49326.2413 41086.1215 24777.3648 25530.7808 237867.7768 45921.1121 20466.2873 29398.4954 62501.246 27740.9282 59129.558 33180.4052 103411.1593 11447.5269 71920.3702 24860.4443 21488.0629 33028.816 7592848 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium SBII-2 superkingdom:Bacteria;phylum:Proteobacteria; 5297.1304 18096.8828 6434.4168 5188.3737 31499.319 3938.3633 3716.0754 2690.5981 184677.4867 4281.367 11191.6604 3634.4436 3634.4436 2460.9994 10480.2469 3241.8275 7318.0067 19665.4513 6531.622 2298.3157 2484.2261 2738.3673 7854.1312 7159.4491 2989.438 4017.4345 4843.9846 4551.6069 380470559 ligninase Carbon Cycling Carbon degradation Lignin Colletotrichum higginsianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 27108.8676 35276.4866 9654.17 50213.4178 19869.7651 36837.4517 21109.0854 27573.1995 13126.2479 29977.2975 12925.7847 273506.7758 556760.4723 43919.2444 68607.688 36514.94 36514.94 53747.8649 36037.024 21734.0262 10995.8598 23517.5053 33712.4531 93164.9678 23305.8482 71715.6848 14582.2592 36783.9276 21909.8148 31892.7986 9154.8534 21404.1571 20340.4854 6041.1719 17922.8074 88062433 dsrB Sulfur sulfite reduction NA uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 11729.6889 9863.2311 29101.5775 16117.6109 22257.8385 21359.3529 2967.8206 10887.3128 11854.9565 9168.0259 148705.7698 16077.5387 11055.3046 14216.2931 14582.6965 14582.6965 8064.0946 16089.8147 9994.712 7334.7523 37632.6158 7084.957 5740.5532 7950.5739 17873.9037 55180.545 30485.5451 39156.4993 22500.9556 7277.4002 11931.8338 14162.2081 5438.0086 10922.5939 298244593 linb Organic Remediation Pesticides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 20611.0353 9785.8683 16029.2873 8939.8558 3417.5711 22605.7426 9737.8685 39112.1696 10270.2358 11446.5685 170061.3268 20622.8809 17885.2081 61814.7424 21014.5329 21014.5329 4184.3714 11887.0269 7291.086 8182.8869 8177.8471 5521.0374 4107.1113 23358.535 14540.0004 8612.4167 26147.889 10773.0899 15998.9599 5595.4034 8428.5748 11744.463 6756.1655 5099.3703 152979997 PRI Carbon Cycling Carbon fixation Calvin cycle Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8777.7923 2665.5443 2617.1657 16471.9516 3509.7111 4283.7584 4283.7584 5600.5974 5159.4513 1791.098 76803721 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 49024.984 13203.6313 34317.8028 46770.9231 103407.9002 11904.5166 31385.1545 37564.0647 23393.5339 70898.3937 56244.4469 35211.4043 831225.3105 68123.9115 35174.8084 45913.455 51736.5228 51736.5228 53451.4403 205820.6052 33530.1779 36832.7671 37470.0691 90146.7642 16801.2229 28737.5334 40304.9934 91631.5985 104228.6635 64221.8939 250856.4252 27449.5276 39739.0515 45236.7398 127833.1155 52831.7545 294791061 xyla Carbon Cycling Carbon degradation Hemicellulose Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 22472.2955 21151.7025 11600.4235 26177.272 17700.469 3341.3316 7175.1529 5520.5608 5378.5587 242634.9922 6476.0759 6045.1391 8938.4818 5275.0058 5275.0058 4252.0362 9585.9455 6888.7697 127859.0059 6549.3048 4648.6283 3305.9457 3409.7126 9014.3977 4022.4848 13375.6079 9432.4829 10658.0388 3256.8646 5624.1901 3416.4528 3357.4046 10062.0478 300101199 bph Organic Remediation Aromatics Aromatic carboxylic acid Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 10325.2051 15755.1987 37185.0861 11356.0306 8341.9505 10794.0002 7154.3819 10844.0229 4495.0432 177432.2381 12120.2082 11578.5188 11972.9274 4533.4467 4533.4467 5090.8392 18405.8904 17992.1798 8991.6249 10077.0198 17369.2111 5210.9402 6191.3267 20165.7944 8368.4893 29834.7817 20202.5391 17980.3628 8579.8049 23927.5886 5433.9076 6845.3295 13090.2767 188022950 dmsa Organic Remediation Others NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 9140.693 7205.9022 9419.5981 9749.6758 67276.5209 9659.3472 8558.5793 8844.3887 130095.8525 6873.3933 46341.2254 4713.2101 5436.3949 5436.3949 4430.1126 17178.8356 11938.1058 11214.628 8350.7835 7001.5154 5035.4459 3830.2011 20318.7911 8106.4113 21763.0507 5146.9155 11947.2645 5359.9631 11469.457 8261.0019 4827.3402 23761.0716 145222056 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8812.2104 4334.902 2539.0136 6099.872 2889.3738 6871.6673 6820.8477 2859.9976 197589.141 5755.4822 6397.0909 4732.3272 3401.4714 3401.4714 6104.329 9941.3089 5153.5456 9720.0328 8594.6912 9346.3125 3583.2008 3507.0582 7900.7754 2996.7815 13626.8062 4705.0121 10142.0251 4028.286 5148.2942 4087.9275 3707.9857 9248.3297 139478563 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 66189.4514 24365.911 43706.525 106487.4089 73502.8358 29555.5581 68302.863 65214.3361 60206.4683 74803.6848 68190.3473 32836.6155 2734676.2301 84558.8325 98198.8713 76407.0138 45466.5139 45466.5139 40670.8366 81385.9169 79768.9819 58632.2581 98469.5097 89396.2125 31951.5352 36455.9141 72064.4932 57804.1727 131511.7432 94381.8802 66955.9169 42697.5976 37000.7524 42611.4815 33962.0233 99894.7125 124027099 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 51486.7733 20280.33 7539.2783 10901.751 27822.8791 3173.7585 6506.1413 17912.965 18511.3547 343472.0977 11173.1605 20449.4775 19033.6239 14297.3776 14297.3776 6613.6607 18454.4252 9263.2152 9274.0041 14542.7256 9419.5191 5380.1499 25183.362 17384.2091 10125.6994 105314.1392 52486.6275 26860.986 14081.3601 17817.857 20262.4623 13244.3712 78525.5482 379710829 ppx Phosphorus Polyphosphate degradation NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 16746.4495 154339.5056 18626.8108 100135.004 27940.7101 13494.2173 15069.6075 5319.5983 14171.7908 23764.5212 12639.3033 489762.8347 23529.7871 25796.8481 40885.9987 22491.2565 22491.2565 29224.5771 18885.6759 21255.4373 12485.0841 16727.3271 21916.4036 7566.8038 16152.3269 62022.9463 15096.6208 50498.3482 24916.5689 37142.4928 11485.8487 21626.2349 20886.5349 15880.8058 14086.4686 311108592 SoxC Sulfur Sulfur Oxidation NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 41064.3202 62427.2431 15863.7041 22414.8869 31259.2818 11208.4488 21105.9701 10098.709 10412.2053 29697.1247 12804.4332 376118.6993 19915.6241 22812.3239 24598.1385 65290.8808 65290.8808 17937.2225 33744.5013 23098.964 23670.491 69338.262 20767.7283 36292.9527 15941.654 24180.5245 11017.43 35121.0266 25327.587 22951.1587 9719.22 20228.0513 18693.8374 12898.7098 29789.2347 84780382 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 6388.2094 4142.3598 3727.5358 5465.4468 2596.7493 5905.8732 6468.5252 154447.2262 4782.6082 6551.2501 2937.7016 2937.7016 3763.643 11876.8655 8830.9064 16813.6772 6631.5636 7138.2252 3550.4976 3282.5091 12963.3784 3495.5555 14220.4382 4352.2497 11333.0062 4479.6569 6099.4891 6335.9529 3486.8444 10546.6149 302580071 FBPase Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 9364.8481 3531.7884 5563.2194 2895.7247 12576.1321 3934.0318 5991.4603 10508.1932 4916.0952 3058.9331 3058.9331 3590.2554 12966.5228 8664.5651 5436.3076 7695.7271 7051.4419 15744.5431 3293.8028 7671.8749 4145.797 16407.9982 8128.6317 15144.3586 6054.58 5971.1268 7085.5851 5680.9705 187940063 terc Metal Homeostasis Tellurium Detoxification Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4901.5466 227112.2795 10622.1208 9984.6871 101687.9036 3286.9279 3532.6591 4970.2528 7289.9649 10264.2544 95733.0654 56858.9665 6329.2421 5448.1687 2882.2253 2882.2253 3790.4673 12563.9561 8194.9584 17548.0253 6053.8346 3564.2163 4996.326 11710.513 15311.3103 21009.839 10382.9474 9482.1972 4929.9356 5866.8624 5234.3758 4668.9995 9463.8433 68164738 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14933.3964 53480.9382 5507.6906 6281.6003 13889.0608 4574.7572 14550.1062 4895.1152 5293.4689 13850.679 10381.2323 262233.9689 14707.899 15085.1742 6013.7338 5228.4681 5228.4681 8361.6532 53770.5449 14037.1278 11696.5331 9252.3899 19295.704 4129.7054 8836.8496 44620.9715 12539.0253 33123.3926 17044.5863 14438.214 8697.7025 13483.9309 9311.5677 26805.9344 17577.7028 367478348 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11964.9226 5958.9063 9018.6357 5953.6662 8248.8447 4051.5627 8967.4569 5086.7627 11506.0178 10703.5332 8570.3158 15609.6693 9960.0712 9960.0712 5202.2393 15792.7599 6022.8651 7292.2399 8904.1312 11998.9201 8889.377 4774.1639 8602.2294 7375.4282 13733.7934 6822.0313 8216.3026 7558.7217 5342.3641 7011.4948 12899.073 8562.9031 356608673 amyA Carbon Cycling Carbon degradation Starch Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 14703.2605 14238.3544 28642.0657 11301.2517 8292.3577 8507.6039 78732.6422 8423.7939 26599.3988 28716.3498 10724.4589 289768.6246 17483.439 28926.7109 12210.3271 16627.3177 16627.3177 10396.4262 52419.2645 20812.8974 13191.7286 26253.4314 17236.8756 15271.1783 9798.682 20053.3894 31916.469 53822.0576 20008.1498 25338.8382 12462.9677 20962.119 15605.8012 11206.4944 30333.1653 209401896 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29699.9773 33101.6979 28280.8527 30265.439 398365.5884 31839.2417 14438.9024 21300.646 24420.5601 23326.7441 597221.5362 26633.1924 31498.6791 20847.0179 33112.3109 33112.3109 21057.7508 33928.4344 29822.0792 28353.2257 36619.2994 41034.811 12756.4792 13050.7999 32586.6489 31275.9859 178480.3891 33688.6254 35419.1449 16193.8132 19544.0841 19151.0025 12821.2061 79158.5853 104782200 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 59762.7591 21475.8719 45483.9289 48293.365 877613.6797 25257.7328 23886.3399 45427.4535 19150.6105 58806.2199 43900.3154 59630.3027 760695.3956 44860.0913 50347.8438 281612.1912 49321.5204 49321.5204 28102.9809 131236.5581 39353.5676 102798.081 43069.3384 40479.9746 21157.4154 27106.1053 57666.3431 14727.5143 128789.4975 60452.6438 45498.4707 20444.612 27254.8475 37886.6381 18315.6221 53839.6771 404420235 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 6054.8597 5306.5595 3268.4663 3115.8113 7012.6362 53889.2422 6933.6837 7041.7548 5430.1303 6515.4219 6515.4219 3053.3544 13829.1192 6929.5349 4099.3488 4100.1423 9599.9315 4901.1744 8227.8671 6809.9867 5766.0887 3374.6858 3453.4871 13028.8327 6275.934 227329543 cmci Organic Remediation Aromatics Other aromatics Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7741.1858 7830.702 104383.2979 34964.572 7761.3156 6607.1835 49830.4959 10292.8043 12232.1674 13972.1802 181700.3038 11706.684 12864.1717 8630.1926 9216.9811 9216.9811 4125.2765 13283.1194 11562.0984 27447.6132 13230.3809 7035.429 4747.2517 6684.0022 10614.1117 4368.5764 20721.2985 5480.352 22079.2452 4837.6263 7205.441 8249.899 5636.1929 13408.1768 388452154 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9365.9304 5170.7163 12898.0095 9902.5806 6280.7727 14737.4308 19708.8381 4922.9308 8464.0625 12319.9764 132680.3867 185300.4188 14266.2107 10690.3867 11884.5277 7354.9955 7354.9955 8111.9049 16178.9101 12354.5175 124542.751 18890.4357 12501.2771 11593.9986 7533.8299 13448.8282 28456.8314 20403.1185 8026.4138 17819.3006 7692.9636 8179.0841 10091.1955 8508.1856 12596.4212 73762984 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 92586.5653 46746.8489 34475.9357 49708.7319 53714.4895 17791.9014 64821.3127 33714.6284 23144.8913 40813.8791 45663.1383 37186.4974 1743732.861 59648.8642 50914.887 112955.5357 38429.384 38429.384 33300.7816 98715.5332 39821.765 88067.6124 107653.752 155084.2049 31131.6261 26633.2011 49598.2938 32931.9921 140597.6382 52600.5919 67932.6261 26839.361 36599.6711 373915.3856 27390.0597 74751.6739 209954737 ara Carbon Cycling Carbon degradation Hemicellulose Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 7296.7605 16187.4439 12526.2297 11011.9948 5611.4735 37078.5718 6684.3416 4298.1387 5517.8136 9692.4767 7774.8566 202855.8607 9304.5482 92624.0508 21099.4605 10178.4849 10178.4849 15501.4501 23939.3773 30991.6044 10567.952 19908.6491 16321.7853 3952.0431 18441.3174 88274.2988 12773.1487 50466.2215 23640.8752 22134.8872 7835.9195 23892.9776 10012.1328 5707.27 9159.7476 288927618 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 82294.8643 19212.5766 42682.9472 55439.8248 127349.4933 22986.1197 64927.9781 53636.4746 45120.1367 129830.6865 94098.5019 40946.3956 2130083.9773 41622.3325 73207.2475 48514.2797 56247.6831 56247.6831 33570.1724 70103.7124 41713.2011 70320.7636 57996.5979 47116.7444 33099.7936 32647.6752 55119.5039 57148.8803 103277.4183 74991.5068 80587.8502 32658.38 47929.6261 64493.9944 48586.9466 64086.7146 308187937 cysJ Sulfur Reduction NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 123997.4567 16147.5378 27454.0886 49253.3352 37554.3127 18823.4882 41264.6995 34323.2624 79884.4505 43807.1052 22433.0309 531707.0892 28129.1668 49300.3141 202019.1085 31182.099 31182.099 26680.4862 116692.8955 23111.9529 31776.273 42710.7066 23104.3889 17637.584 21830.7749 126779.7502 44874.7832 60550.0197 32997.5529 35103.6446 24415.8319 26295.44 32925.2083 63021.1597 45143.4605 24983998 terc Metal Homeostasis Tellurium Detoxification Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10096.7026 7578.2791 10845.6885 8594.2954 7116.2568 5420.0054 4963.2503 7050.4173 13394.762 5064.0228 233548.3113 12568.4394 11003.8846 10132.464 3547.3848 3547.3848 8810.8118 13995.4715 8782.9045 11970.4143 15473.4925 21438.9972 4302.732 6139.6032 13950.2112 3872.5852 24874.0004 9040.246 17495.3054 6691.2497 9265.2005 8450.737 6840.9734 19331.9605 326948018 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 78075.3289 5418.0823 14668.6418 357325.1511 6687.4785 56679.8833 9952.0647 14317.6868 57092.6167 12007.0373 15098.7929 268577.6363 200884.0443 19442.7967 16895.0947 9747.0612 9747.0612 10517.1581 25405.2849 10085.6899 1432010.661 9066.1166 57223.019 28737.7306 8033.1958 23255.7557 9551.2012 150568.2903 75117.7922 13026.3984 7236.7983 8518.4186 15988.5694 8395.4528 6765.8665 262222439 TIM Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 29501.4284 6771.0144 11772.9576 7826.6145 77454.9602 150225.1025 5366.7031 32230.9735 59896.5426 28744.4791 161809.5277 292963.208 319968.9044 32976.6496 17243.5008 17243.5008 17236.0062 652681.2598 22255.2816 107136.5623 54471.188 48014.7671 48684.473 14418.2762 21653.468 33612.215 54032.6616 10876.854 39145.2773 31615.2978 20825.4197 53609.1854 22025.6878 85624.249 150955610 narg Nitrogen Denitrification NA Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 72701.3708 41408.5225 89347.3189 137190.6831 233242.5801 11168.9294 54667.1602 79166.4053 52861.2092 105315.2819 134841.7799 89338.4652 2120550.1067 231110.669 86196.159 75176.7588 66408.4498 66408.4498 58211.7003 112017.5503 65493.814 62167.3722 77644.0235 301706.4609 47668.1274 58463.1114 75185.0212 58076.9434 243700.9303 137054.9074 81415.4698 48810.9153 77440.0236 87064.5734 37478.499 113234.4128 238919980 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 18904.0471 63877.758 2146.75 6819.3093 4271.6733 9950.2735 17388.3079 7203.3623 165567.605 10001.6594 32648.9307 21462.1418 9250.4627 9250.4627 7259.2615 16388.7349 18848.4439 17850.3245 471761.2823 58192.9924 8803.0004 8974.0683 20543.0105 10600.3821 23533.1666 20862.9377 15045.4038 6478.3931 10469.0891 13585.946 9924.6951 14431.7768 383781761 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 6802.9988 8631.0872 36531.6228 6181.6421 3812.0679 2658.29 3806.4717 4236.1851 2875.6321 130931.332 9235.6311 5094.8714 9922.5153 5951.1067 5951.1067 5785.9134 9047.5679 7765.6185 12573.2401 3492.0627 11075.9018 21091.9804 9360.2611 8564.1167 8910.5016 4341.9038 4052.1529 4052.1944 3233.2805 53759053 nitrate_reductase Nitrogen N Assimilation NA Colletotrichum sublineolum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 9471.8339 6464.2524 30255.413 5284.9248 4896.9483 3182.6827 5943.722 8326.9008 7267.8528 119037.9503 6084.3416 9316.5112 8857.8125 5691.967 5691.967 5945.586 13851.0574 9931.1262 7956.6733 7680.3134 7765.0469 8489.2297 4352.0036 11438.7321 3743.6548 20589.4172 10586.3105 14325.9478 3127.6027 7521.3445 12871.7712 4513.1734 10728.6099 350561087 nosz Nitrogen Denitrification NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 9785.6362 13096.8799 10940.5195 5332.3771 76428.4053 1848.0694 6228.0937 17367.9207 5421.7306 130642.3959 5619.1491 6777.5401 4705.2114 4215.8335 4215.8335 2963.1859 6998.0078 4845.2458 5155.9214 3905.3025 4075.6116 10100.7282 4315.3278 37859.8842 5175.1748 8340.0801 4369.8705 5138.3905 5396.327 2704.0402 17489.8939 68135535 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 22701.4964 78956.9779 12418.4676 19044.3065 6301.2717 12895.2901 15106.3262 5823.9258 13047.3139 28839.0763 8492.5508 451838.3225 23895.6063 16612.9519 10917.7434 6310.2294 6310.2294 12912.5751 29425.9301 17863.6253 15236.81 20811.2864 25733.2113 15226.1608 8446.8969 23014.9961 7978.8679 31075.64 17012.019 22364.2186 8046.0408 14010.3216 15796.6623 10422.3745 29195.6509 77458551 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 902849.6137 19179.3239 15789.0009 14518.4584 86911.6053 8433.8451 181791.6701 754303.1256 16238.393 23390.6497 23180.0396 46904.9098 650353.042 45018.6419 49201.0514 60449.3538 88094.2389 88094.2389 434334.6921 244454.6851 23958.6436 135648.3045 91365.6974 45391.8462 36883.0163 47781.5048 43992.9192 30812.2716 36215.7403 33849.064 41689.9449 21757.8829 235675.1857 33591.8342 373787.409 24157.6449 126470052 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8238.2526 7221.0528 6090.8036 10065.9524 4449.7021 7605.7132 5039.6266 7394.2101 5702.2748 160984.9427 4343.6591 6292.7636 31026.4109 3946.0448 3946.0448 5579.3302 29456.5302 14273.1069 14396.6635 7632.2044 5870.8244 4320.332 4218.0254 7657.5597 4219.3619 16786.2267 3742.5346 12752.8828 5460.1421 7670.1339 5586.5571 5351.113 6925.0856 294883886 aoxb Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. S452 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4609.3946 5350.2208 14015.3004 7215.7006 19782.5926 18270.7508 6807.7467 6151.9907 184387.859 9814.3214 7805.7678 11609.9094 11670.086 11670.086 4955.2194 32130.743 26848.5258 2344.4943 217036.051 57541.2178 5828.3748 25780.8605 19856.0666 33120.5054 19395.2568 131191.488 18693.9921 11188.6579 5717.4607 99081014 dmdA Sulfur DMSP degradation NA Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4061.0546 2807.0948 4647.5481 4511.3939 4893.8025 4023.416 5981.0313 5614.2753 2589.0317 6578.6708 5199.905 3061.1578 2605.7849 8381.8199 319438900 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7763.8289 12502.4383 13452.7255 8656.593 9379.6903 9055.0514 10768.1185 6780.8943 7951.703 7223.6333 203606.3986 8700.3099 11184.7887 14561.1702 9497.9099 9497.9099 7450.9343 13975.566 9988.9137 9830.4062 10713.8903 19962.5878 4802.7374 6926.3298 25466.8088 5522.6815 15307.2907 16185.8405 15122.8069 5709.3434 7726.5607 8756.8396 5408.1854 10441.8917 291424257 amyA Carbon Cycling Carbon degradation Starch Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 13795.3671 3096.2464 24466.8029 17637.9368 6387.1857 9244.2642 12783.4345 10192.4899 190688154 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 12480.9421 17830.2844 5168.1003 22178.2672 29276.9275 143104.2201 3582.3184 8665.9478 14815.8604 14168.4736 363112.4384 34568.978 23254.2911 61863.1753 18400.2138 18400.2138 22917.5807 101060.3659 30669.9918 39419.6172 26190.0908 19602.1373 16608.8798 15607.8407 30802.9884 32785.7464 35371.4041 71080.0244 116456.2452 11072.1957 31106.7151 95491.7838 19401.1791 12505.2276 283481860 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 72746.998 17840.8705 47707.0004 43360.9156 37922.6583 57751.5474 147545.6506 37915.1546 35811.789 65744.6958 38140.6942 1135033.9079 52276.6918 57888.788 74306.2771 34552.7406 34552.7406 23464.6815 82615.7079 40218.3369 47017.347 65465.3623 57718.0815 32111.1985 36855.6569 47646.2378 57237.197 146479.1576 56637.3824 57529.6089 104133.4915 49224.3518 49013.8542 35062.06 72960.5874 356659052 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 40744.8627 13390.3052 15539.8278 26171.3891 8134.1541 8008.641 13587.4014 14706.3598 52616.5446 14150.6739 21428.9258 69915.2477 1379044.1468 11325.8181 16936.1576 38322.2573 48502.0998 48502.0998 86459.5102 66739.2658 25485.4955 68964.5529 104997.3306 19080.0649 19499.4734 40703.4625 26719.9957 23218.2044 104232.1059 19228.3692 30099.7608 11269.9612 51432.8022 38015.3208 45505.1947 39751.1491 225157910 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 4719.8442 4631.2781 12060.7644 2979.4048 2190.036 8104.6176 4105.3789 6210.8034 4129.7883 16619.9068 16619.9068 9048.4875 3952.0901 4199.3559 5449.1692 5373.3874 3817.734 8127.3749 7063.2512 31789.1945 13091.6702 14229.0677 4778.7153 3794.0014 4552.0348 4230.2388 367478425 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19007.8895 22078.0521 16768.8005 14541.2895 8810.0125 576173.6981 24218.5385 8176.1789 16753.4449 33254.937 37332.657 508531.3005 21495.2158 20485.9048 248023.3929 40285.2185 40285.2185 9341.727 31274.781 18399.0512 22099.1826 18898.5146 26120.7651 8952.2423 65670.5891 29440.8496 27115.2395 37876.1646 15458.4522 77373.8885 29679.7993 24425.2079 27336.2978 20899.7356 22495.7198 350270138 chitinase Carbon Cycling Carbon degradation Chitin Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 21236.9298 6557.8453 6963.0616 10003.5582 4806.7124 4445.8432 5968.1171 8806.9925 8369.559 35032.1013 7517.2073 180183.5915 12164.8149 8382.4692 10919.0935 7982.9759 7982.9759 6550.5408 16202.6692 7334.4943 11281.3547 13828.2194 22246.7025 7583.8148 7801.3606 18558.484 4659.6817 23090.4062 9255.7472 15476.4467 5549.8949 8579.4866 12063.2979 5045.4076 10466.1363 255268765 ppk Phosphorus Polyphosphate synthesis NA Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 13478.9918 190102.7593 77764.2288 11631.0752 11931.0902 9156.0122 14060.5403 15727.6817 6740.9296 12889.0096 32995.1852 7639.1429 258023.1235 17063.3869 11579.8202 10843.8572 6828.7987 6828.7987 68667.9097 53286.972 14146.0907 22116.6237 15149.8257 18609.9829 6159.5921 7843.9468 17446.1401 8777.3763 22342.1177 62895.194 113209.4459 6753.0529 8545.3128 10657.3092 7710.5832 23389.829 371940152 cda Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4606.5044 1926.3039 4165.4433 60385.95525 3907.1964 3545.89025 4701.224 2524.9502 3380.8448 4044.7811 4405.1072 7110.7216 5699.9956 3067.1826 35614.7822 6082.69855 5280.876 2364.91955 3575.497 3838.5907 3811.8244 71899315 terc Metal Homeostasis Tellurium Detoxification Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 4617.5906 3136.0934 375082744 amyA Carbon Cycling Carbon degradation Starch Thermococcus litoralis DSM 5473 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus litoralis; 25701.5197 11106.6534 18992.6555 37448.9027 17952.6594 8437.7343 17542.0314 98585.6449 13654.6396 17235.5436 29772.9427 22748.3364 754687.8895 32914.9613 31272.6551 54428.5706 24239.6496 24239.6496 23023.0218 39301.308 36483.9322 21925.5448 40806.978 33426.413 22093.4746 19917.4673 50838.4519 50202.6668 42520.9967 32320.1014 35759.9794 36246.4905 10448.0559 21116.5557 105194.8017 55145.6173 169793440 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8853.6336 8398.8363 10300.8819 6521.9565 6133.7474 8151.0408 4512.5226 7554.7702 13572.9705 6911.3904 157525.615 11256.7998 10382.6801 17889.9303 6673.2273 6673.2273 10141.8433 14452.8121 12243.7317 116289.0944 7941.2933 6021.4826 8127.1561 7059.3106 16045.0853 17013.2745 19969.3055 16426.0588 32789.7711 4897.1115 10982.0633 14626.7895 3225.2727 8993.9181 359393556 alkk Organic Remediation Others NA Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 21672.2577 5386.8034 4858.9678 18925.1126 5051.6421 2246.4031 4083.1232 11419.7892 2220.9854 3840.4672 164638000 p450aro Organic Remediation Aromatics polycyclic aromatics Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 11691.9135 6066.9156 11738.2956 3985.4473 2400.7826 3257.7727 7578.1095 7954.2385 4732.1382 117956.8239 12678.9054 5050.1642 4689.0622 2339.4901 2339.4901 4422.7165 10901.1227 6754.4165 7888.1206 5919.5815 17795.371 6375.5454 4656.5808 12506.4184 4122.7638 4070.6836 5660.4189 10859.0489 3307.6231 4390.7139 5820.3711 3571.7245 7349.7721 119872462 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 5596.7906 2205.4612 3610.7209 2092.7326 3840.2038 4633.4244 4773.6387 2501.9281 2501.9281 4413.2428 7792.9288 6262.3477 6534.6835 6689.0449 8811.2189 4072.2019 2635.194 6629.6499 5223.8644 10451.7988 6727.1372 10262.104 2281.7541 4916.6506 4559.9522 3262.7541 8084.5575 397090787 terc Metal Homeostasis Tellurium Detoxification Chondromyces apiculatus DSM 436 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 34044.3652 40917.9586 4520.7843 24082.9529 17903.8188 14507.7827 13922.601 4670.574 8030.1895 21614.8658 21322.9928 936017.3407 42386.6501 12389.7194 63348.6827 114914.7792 114914.7792 14449.3573 56797.3194 8474.5743 23219.312 32629.5482 8860.8489 7137.1591 24106.0908 30116.9218 22244.3777 106237.5046 18019.3428 319462.427 4341.1295 19078.5823 57620.5195 18653.0038 33456.9863 318041723 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33671.5016 14072.0141 21765.0613 34204.4505 63676.321 42262.254 37725.4971 22576.5754 26410.8551 48440.2701 57164.1617 526968.6524 47645.9098 28042.022 33281.9783 53802.7811 53802.7811 16126.7002 178494.7835 27217.125 41119.5351 23239.7248 246384.3059 15109.8655 21732.8408 35143.462 99655.6476 59267.0256 28282.1661 59683.3343 135304.5867 29012.9248 17040.5602 20669.9513 31788.7422 383210696 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 58856.7451 20640.2223 56608.1463 40174.7555 25065.7207 40871.8459 68791.3519 94407.3349 49824.8396 73678.1725 26880.4737 1368245.2219 63810.9077 86881.2737 67276.4762 34674.0232 34674.0232 36342.5863 168197.7026 87684.4379 45067.9117 89274.2356 46531.9266 30565.4327 41338.1328 54561.7888 52811.4112 103595.5239 75560.0014 67947.6355 23212.545 39238.0364 50121.0576 34194.3248 90017.4547 117619830 mer Metal Homeostasis Mercury Detoxification Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 41873.8247 14106.3894 23480.5953 28621.9191 29140.0923 11093.0914 18803.0129 21713.9224 13416.6304 22436.9421 26497.3599 21019.2406 800973.2558 29953.6071 28194.0183 20311.93 37178.1836 37178.1836 20145.714 47042.4295 23336.1191 40204.809 87631.7567 25393.185 14814.9617 14621.1109 35865.2279 12133.0162 54841.3312 28059.8486 36365.6422 13213.5873 19017.5348 19798.5115 17534.098 35158.1684 283835467 cysJ Sulfur Reduction NA Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7203.4449 17716.9757 4961.3275 11063.8248 46534.1962 34578.2671 13757.1035 20197.5736 21311.4048 12398.1776 527616.2063 24205.6763 44466.9908 22745.6697 18086.8387 18086.8387 8597.8224 20662.9703 10825.4386 14483.2197 32986.6993 5173.4445 6236.0269 15086.8519 35342.5035 20033.8038 24072.5652 21729.2477 14135.7047 11193.5214 19286.1032 48983.9407 13614.6921 12130.1776 332882724 ppx Phosphorus Polyphosphate degradation NA Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 5406.2862 28451.4619 6860.2332 12707.0979 7988.1399 126236445 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 19613.81415 26921.7434 21382.8679 4488.2316 16746.2463 9133.0053 11575.80245 20276.9822 8020.45635 10420.2124 11975.2435 195553.34595 35992.11535 8081.33295 8081.33295 19590.63185 22117.66425 12406.49915 9292.47795 48845.5739 10649.44675 24536.7677 15159.79135 21063.1123 32919.4158 21383.1445 37608.4132 5473.90085 9382.9959 16503.06575 58606.3823 227467010 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 15132.6105 29743.872 12797.0814 8548.5117 23664.8873 9359.4149 7059.3879 23108.0602 14721.929 163124.7176 380383.4078 14251.8206 475692.9536 112199.0366 12507.2479 12507.2479 7310.3816 147848.2953 17101.2548 20504.1104 19430.0977 12169.325 7139.983 13926.8503 19775.6151 34912.3586 36180.6143 76779.1174 19418.6693 67453.8052 24275.2521 33693.1714 22814.8398 16244.1378 259507073 amyA Carbon Cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 175227.3614 11935.0432 197019.4871 34171.3633 396794.415 13167.1094 12847.7971 34481.4423 7862.6303 54505.5118 52989.6916 36499.8487 638364.1962 59479.36 68495.9854 86443.3572 40185.6594 40185.6594 23630.9521 62758.2489 38742.5007 40406.5941 55511.3666 19542.4811 17850.7342 41955.5022 69581.4942 32318.7701 75712.8607 53726.929 65878.1657 20965.7025 55537.9473 61809.3731 58295.0736 224267.9571 91688639 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7888.0394 8303.8805 9029.6513 13135.6323 5041.8824 7159.7306 9044.9966 7318.8493 10969.0766 7885.253 3658.1767 159365.1144 9528.0148 7070.2938 15347.3779 3346.5416 3346.5416 7003.965 17898.0452 10903.3996 5965.8947 10875.7065 14390.8249 5971.4337 5314.6991 10276.2056 231204.6947 13898.069 9324.398 11841.979 4302.3983 7920.3734 9048.5807 4762.8808 12217.2279 257124886 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 7474.5433 86572122 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5626.9304 12535.2252 21790.85 2968.0553 4724.5223 3819.3764 530966.8686 4663.392 4476.0648 4476.0648 20529.2779 5401.9155 5164.5065 3556.6952 5601.0269 8796.1963 5656.713 6008.7027 3588.5083 4589.2984 7551.0499 4650.5995 4930.9506 148657308 pcs Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 15206.9176 37637.6098 90069.0804 5005.366 187861.2199 12357.5394 9741.7467 16395.6699 34247.5823 12039.8421 14010.5797 241476.5787 9222.1751 22262.4082 7542.3738 11345.0778 11345.0778 18431.0099 14776.4378 15697.2059 11404.7201 13903.4139 13851.2344 9447.8185 34283.9459 46714.9369 24591.4585 24153.1618 13948.5539 29112.2965 47044.4217 22029.9623 17725.5049 24934.2677 12139.2527 422314029 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7898.2516 2321.7499 9711.7109 36245.1315 3733.60345 138902.0279 3709.4798 4949.3697 4238.1174 2850.4924 7395.5829 4441.73005 6073.2758 6030.2804 2856.7201 3485.4531 2616.449 14732.5043 13242054 phta Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter keyseri superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 291547.9215 292059.4743 301993.3499 78397.5058 212941.8434 32477.2352 106565.4274 199939.3354 142075.8231 125361.8219 159894.4078 329015.443 2184498.8131 129847.2773 339954.8698 195051.6261 203440.7414 203440.7414 107120.5429 201133.1662 79383.7069 103356.1176 395404.2793 265575.3782 155145.3004 125983.7911 149860.1323 147950.0907 467335.0278 202862.0676 164518.7607 82548.8704 133259.5797 226592.6733 104083.1024 159772.9284 359464057 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 34549.2875 9819.5322 9448.2996 4535.9493 6042.7046 9234.6677 9595.5821 11113.862 4466.0886 143935.3725 9133.7123 7900.1367 4492.1613 3810.822 3810.822 7081.6185 14890.5075 14222.5452 6818.1762 12888.6965 17288.0395 7073.914 5678.6738 14071.3912 5575.8654 21502.8068 17413.1101 15888.6468 4990.9331 7130.461 9820.0804 6257.2615 13741.0427 332299168 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 166941.5665 6152.9817 9035.4694 29786.7117 4841.4868 7662.9341 21599.1409 48951.0717 6154.4529 6649.4937 6272.3092 4405.8006 4405.8006 6730.3729 6384.3195 5787.1976 4448.3231 2364.3333 2822.8842 6218.8887 3103.0495 12644.3484 6911.0752 8095.8692 7224.9066 4114.9625 8492.4528 5737.5907 13421197 linc Organic Remediation Pesticides related compound NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 74487.8162 17093.7762 10077.2619 37155.0654 390299.0582 50223.5177 62530.724 5668.1335 40985.6352 25175.9747 25408.6375 351790.8755 25460.8472 20302.5952 30931.9475 30665.0513 30665.0513 12390.3885 29362.2983 16992.283 17294.654 118164.8676 22649.7417 11918.5911 11741.6226 22599.6475 12666.2666 37007.0796 12747.8335 36400.9372 20392.1814 19493.1657 23509.9104 18049.7086 144946.3445 238753013 terc Metal Homeostasis Tellurium Detoxification Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 5135.8809 10062.2977 5701.2449 6790.6704 3493.611 4127.2547 3338.1236 5219.8381 5038.8485 3185.3862 126962.4246 5704.1076 7586.8369 2921.9072 2921.9072 4812.8651 13510.9341 6048.6394 8220.632 6036.098 5750.2333 3142.0878 4631.0775 8412.6037 3638.4656 17051.2562 3824.6566 11471.0303 3863.655 6336.5843 5563.3261 3564.0313 11508.7804 193996854 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 8186.232 5613.1533 29098.0777 2667.9047 3628.5651 230086.5941 6178.4235 149006.0049 5644.8634 6647.6123 45380.5026 4348.9163 4348.9163 5174.9517 8319.4741 13546.6955 9044.6434 11252.9782 9047.0648 4700.6595 8051.3287 10256.363 35017.4475 28609.9379 9883.4878 7193.668 7438.2193 10317.2447 8299.0194 5845.8362 11523.3692 111153558 gdh Nitrogen Ammonification NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 15611.1381 18892.3583 10442.1569 9397.4995 22996.3208 4890.6857 6386.3179 9454.4321 4148.9397 172959.2018 9424.2183 39861.7518 5928.88 4789.2795 4789.2795 7945.0436 19490.5002 11408.2416 13343.964 29446.3782 25175.6365 5862.4599 6180.3903 15162.5108 4804.907 24235.0632 8831.3725 15030.8998 7009.4515 9469.1096 13060.9856 11837.8028 16260.6164 304552619 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium dentium ATCC 27679 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 7748.2997 14314.1567 22920.7248 6496.7013 8062.0567 12127.2761 8265.0396 20438.16 34338.1671 157621.7735 16875.4305 10844.9335 5155.4867 2778.5083 2778.5083 6324.0235 15172.9294 11868.9635 7426.2809 9034.7203 14437.1802 4706.6145 5969.394 15180.1151 28533.7049 32428.0817 9062.9996 13932.618 9882.385 13432.9211 8009.9667 7741.2539 14672.3226 94482874 rubisco Carbon Cycling Carbon fixation Calvin cycle Telmatospirillum siberiense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 92034.5302 4156.9699 3759.0063 2004.76 4067.2019 6415.8298 2727.7978 92816.4125 6579.5398 5254.809 6768.9034 4247.8734 4247.8734 2767.0186 8152.2643 4058.0281 5396.4326 7565.6384 5028.3091 9380.893 3252.6802 7930.8908 2724.57 13203.6854 5857.8921 6156.1707 2584.2871 7423.4481 4830.5776 3843.0372 5395.9855 257459629 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 6053.8993 6361.4535 4968.4413 3401.8077 4140.6505 6952.8536 11451.2273 3807.2897 104556.2275 6379.2854 6252.7899 2324.9873 2324.9873 3109.5847 11810.1367 6466.0741 6154.0452 8964.0673 10059.7227 3100.7231 3008.8057 8474.487 3291.3832 18955.1446 9644.6794 11056.6368 4826.0154 5938.7218 5458.9154 3439.4869 11849.2652 389932588 pcpe Organic Remediation Herbicides related compound NA Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 4129.696 10314.2728 3812.5394 4671.2641 2432.4065 65525.2127 3997.0205 9723.9345 2009.537 2009.537 4392.5569 2960.2756 3621.3703 8677.1732 2995.3406 4685.3242 149811306 dmdA Sulfur DMSP degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 19653.1612 69160.9044 16757.4993 58900.7361 23686.105 15826.9453 7101.967 71830.1847 28573.2244 24917.1921 481493.8292 16371.2038 23628.7966 61246.8088 14972.134 14972.134 38057.5822 46322.2934 16654.8976 25565.0799 38626.9114 35238.9985 14040.9108 16709.5426 29247.1427 21141.6911 49689.3933 47685.0065 39213.3379 11241.0546 15027.3073 20041.5216 22319.8775 19819.151 163794918 hbh Organic Remediation Aromatics BTEX and related aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 31853.1018 38583.7628 8180.7007 75443.5862 499045.2485 24571.332 24184.2728 15505.9323 15518.4047 36963.4293 51601.4787 347064.617 19556.4865 30195.4956 13158.5466 15073.5285 15073.5285 16803.7766 31238.0727 21459.2685 70642.7413 45987.8461 24668.3228 10913.043 19585.4123 52688.6768 29719.7384 45952.4095 18634.5331 28373.7354 40648.3555 38548.9393 14805.745 26015.5893 26406.887 251844443 terc Metal Homeostasis Tellurium Detoxification Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 56195.7577 4730.639 17564.1638 71766.2612 5142.287 3382.8587 5429.2875 368899.1988 14561.0817 6691264.1129 9314.7834 21043.1987 33556.6774 48251.9389 48251.9389 9652.7489 19096.6692 7331.5035 26502.7345 15632.4734 7861.5255 4149.3949 26696.8952 36582.041 16661.0086 648962.0327 14422.3678 33189.3678 8532.8324 21691.2318 11772.4288 7192.2939 143968.2326 342824028 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 3955.2998 4168.0798 3075.3943 4004.2584 5053.9705 96841.0397 5713.1404 5371.3825 5119.3437 9732.1055 5307.1375 6945.83 8060.7766 4923.1386 3780.1806 4470.1064 5886.9234 3360.4043 16699.2268 4467.8639 9000.2107 3877.6871 5077.6848 4384.8657 3411.8898 13731.1081 315604806 mer Metal Homeostasis Mercury Detoxification Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 27403.3055 6157.3687 19643.421 29242.1976 6344.0683 8425.4609 11056.1797 33373.4665 7281.5216 121954.9462 18178.3695 110440.3991 54084.3976 27223.3303 23797.9817 25825.7916 25825.7916 35801.2332 47113.9912 9250.4782 235653.2574 29249.8254 16607.2775 20087.3486 14423.9559 15959.499 16559.4059 75358.0838 40748.2133 149479.5722 11594.6197 21083.7325 24436.576 21163.9895 159289.6824 313113333 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Faecalibacterium cf. prausnitzii KLE1255 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 4559.3623 2761.2243 3009.6 8472.6022 2410.8735 7471.2471 4220.455 124260742 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 26492.3601 82830.3806 18855.0982 41394.6979 26315.7075 34003.4977 23463.229 34799.555 14993.1134 23463.8996 39071.1323 23568.155 501529.949 35550.5924 39217.4787 29186.8864 16520.9469 16520.9469 20100.9747 47347.0138 24346.7796 26707.5486 30544.7821 44839.968 38217.1424 14902.0607 36197.4501 15923.3861 49629.0971 28466.7854 36995.1547 17536.2718 20350.4747 25997.6105 15297.7873 41552.8882 380447744 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas pseudoalcaligenes CECT 5344 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 4609.1693 3510.7289 6699.2933 5563.52 11602.1283 82664.2412 41135.5457 271462.3503 15012.9077 3786.027 3786.027 4762.3011 9163.3098 9898.0515 4863.7623 5862.3836 21058.0305 4418.401 22450.3185 7957.8473 8182.657 4087.2368 4075.3238 16504.4505 374569992 Sir Sulfur sulfite reduction NA Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 26652.1892 13082.1145 22884.9907 27822.0726 12821.6028 22691.8431 59228.5127 29371.9127 124567.793 26782.6854 38093.5992 990142.5642 26489.3988 69229.6876 33118.4595 67509.509 67509.509 36778.3926 63762.9598 20693.6125 26289.8078 46117.7244 31316.837 19521.0722 18531.8215 40064.7081 43759.0153 155199.2458 70349.5609 35990.9292 21033.2624 57537.5308 76244.6583 46426.9303 38927.0673 347532656 cda Carbon Cycling Carbon degradation Starch Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 9493.3042 3040.1884 4377.4714 3122.0098 8432.1261 6602.0171 18922.5697 4665.3026 10430.62715 10430.62715 8371.7072 4230.9553 10730.7598 3980.0812 5731.2019 5515.8363 8601.9314 21102.8675 7752.3868 3898.40955 6171.7691 4207.8568 16799.6853 4889.8552 209907898 dmsa Organic Remediation Others NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 28187.6545 28484.5313 10739.3424 39139.2652 11969.5091 52884.2557 21158.5283 16505.8878 44558.6518 20413.1739 23410.0799 727623.3205 111598.099 81763.9224 61160.2525 43308.9787 43308.9787 24007.51 400127.4952 27708.9965 11947.512 45816.6024 27245.0301 403960.8883 74669.8887 26022.7601 53680.9671 63486.6845 13026.521 50531.9031 21986.8882 25758.8092 38069.0358 32659.7405 100816.0869 119179009 phospholipase_B_fungi virulence degradation NA Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7254.5866 10296.238 4900.5189 12110.0946 2992.2636 94369.1702 3477.7813 1956.3664 1956.3664 5963.6091 4652.3096 6918.8508 2616.8775 22519.2655 5142.3459 1663.4541 2508.7101 12849.7962 4524.2796 398377865 cmci Organic Remediation Aromatics Other aromatics Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 215326.2872 37708.3326 265812.2126 65189.5699 89251.3939 23261.3411 72562.0037 187263.0147 181415.3191 136301.4045 199635.4605 227650.6767 2213126.4273 191578.4375 352830.1601 201075.445 141584.2979 141584.2979 90696.0414 128575.4006 88744.009 161660.4853 286919.4688 161947.5454 104230.3501 89815.6586 210342.8334 160266.9475 347218.8892 146842.9445 154482.4442 75249.5437 103546.1185 188942.9747 115166.1035 492794.1227 297156572 alkk Organic Remediation Others NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 61079.2547 15805.5563 4101.9066 62105.3517 6120.8892 16805.0247 7869.9719 6825.6352 6825.6352 40951.8362 6598.7173 2228.5369 11814.9463 7804.1531 5733.0435 8060.6002 8569.5015 4935.3992 35704.6638 145965480 amyA Carbon Cycling Carbon degradation Starch Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 13377.6544 511159.9449 10163.4781 4752.147 22713.9876 88797163 FBPase Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 14370.4163 10126.3986 14855.962 20095.3147 10044.6405 88803.1646 9204.8481 12456.2845 10549.7963 55940.2836 9479.2954 299665.6776 16772.1594 13655.3321 11377.9001 8778.7747 8778.7747 9348.844 26071.483 16393.4373 30352.0068 15718.3236 25878.6885 7605.9638 8689.4036 23771.6189 8017.5156 28218.6611 12803.3653 19958.9136 8264.7307 11169.9984 10598.3882 9255.8121 23527.803 302490089 amyA Carbon Cycling Carbon degradation Starch Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 92420.5567 36819.922 86250.2993 42099.4717 129039.5632 25644.8607 18235.2314 127424.5305 24337.9341 83262.917 183507.5259 146724.3397 1381263.9211 72617.1502 85776.077 162575.5618 115982.6982 115982.6982 25346.3942 92740.857 233928.4923 52664.3045 86486.2489 52489.3629 44086.5982 119089.0585 121429.8484 82579.9791 97966.3251 91149.5299 154936.3592 125455.0362 76579.9215 108480.4496 28984.137 71702.3251 324999045 rubisco Carbon Cycling Carbon fixation Calvin cycle Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 41168.6715 6378.7222 6349.4872 4543.4163 7963.2796 12755.6606 13108.8029 18223.3479 13926.3267 342305.3759 10186.8281 8492.8578 17283.6052 9604.3819 9604.3819 12243.9446 22971.432 18091.0411 13615.1626 25470.5993 13190.6108 11804.6094 8182.5497 11471.4291 14491.7758 96164.1371 10770.9239 14473.2943 6759.7332 12956.0631 14046.4209 12279.4443 14175.5267 351591819 pcpe Organic Remediation Herbicides related compound NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 7070.2874 2718.3437 15739.8441 5022.7441 17277.0095 12943.292 14032.8092 8976.4644 15467.234 9391.7708 9391.7708 4426.0608 15969.738 9257.7101 10135.7648 5859.2247 11481.1216 5146.4266 11980.7013 9853.1648 4559.8566 10679.3111 10314.8621 17635.562 4246.639 8306.1805 8965.0563 5549.9415 50428397 catechol Organic Remediation Aromatics Other aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 17480.8064 15365.7745 6044.0814 7582.8927 11049.6871 7009.0813 6629.7504 4635.389 9390.6853 11553.9141 6053.867 194556.0565 11372.6325 8811.5873 4186.4459 6401.4012 6401.4012 8175.9268 17249.2071 20712.742 12386.7165 20297.5337 13782.126 7522.1901 5863.3817 15348.5761 8076.0467 24908.864 9455.2338 15454.2398 5978.2575 7959.0986 9886.5775 8870.0946 14668.0109 78494567 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 27646.5176 8496.9558 4776.7221 8082.0923 7647.8063 8576.1213 11694.4545 11664.3776 179061.32 7596.0006 6452.3125 13005.2557 15118.1429 15118.1429 18169.154 47184.215 9775.8516 15278.2111 12276.4721 33860.4156 10201.1885 9824.9664 27019.8226 7496.9133 15135.8899 10020.0701 18001.0399 5603.9333 15572.6609 8833.6387 4458.9816 5844.5043 91795177 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23144.2679 1071478.0316 9232.8922 119568.1912 6498.691 3831.9257 5268.2287 5907.6229 4942.2713 4942.2713 5174.6716 8836.1978 40156.2893 27868.7012 5020.5047 4424.7292 6275.9781 4561.185 14489.7808 6038.2192 20471.9863 6205.8707 6149.9095 4478.9004 4882.4186 11270.084 4268.1425 194566416 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 248503.655 76312.27 28590.6226 66635.4841 31429.256 255996.3326 530685.6478 112027.554 74014.0287 118441.8254 147803.5347 1680475.5537 106731.6733 124563.4838 133778.7675 104151.8935 104151.8935 54544.7297 156094.458 131872.535 332845.1249 201609.2659 287906.1131 123538.8244 109215.9646 150552.5293 133207.5388 238859.504 173182.2937 196660.8617 125603.1711 107505.0078 155409.0367 109281.0273 205682.3158 296393194 alkb Organic Remediation Other Hydrocarbons NA Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 7604.8902 2571.2252 37274.0248 5290.6518 58647.9301 3978.6336 4401.7 7546.5821 7546.5821 11532.0082 5075.937 13535.8769 2505.3943 4953.0779 4446.6104 367154.0866 8450.2162 10046.623 28032.0491 6423.2388 8586.5639 7794.0232 148260300 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 5728.3619 16692.4572 13011.1078 5457.1862 5705.2205 12661.2249 10243.927 6769.2658 5915.6936 89434.9014 4457.2938 20995.2857 5471.5835 5471.5835 2811.3964 16790.0265 14280.1564 4072.2837 5440.4971 4257.8055 7770.3371 13020.2095 4648.4205 14690.3037 11952.987 9389.3041 4652.8352 4186.9412 5502.9045 12027.3583 374657770 alkb Organic Remediation Other Hydrocarbons NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 4577.5236 2313.5729 2313.5729 4550.832 389795868 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 7220.0142 4097.6932 4484.7647 2464.5787 80940.018 4597.5623 6729.5994 18781.1534 5955.8042 5955.8042 8060.3791 8684.2726 5944.622 5219.5944 2723.9086 3168.4102 2604.7966 34017142 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7437.5664 3410.2497 3513.901 2954.2207 4655.0134 2431.1707 109426.5098 3695.44 4726.5069 2371.7687 2371.7687 9222.2735 4429.5237 6473.529 5345.772 4441.0797 2229.1431 3007.6108 6719.1312 2543.2272 10029.5412 5330.5663 8694.6044 2196.5441 2786.7386 3314.948 5807.6224 6404.4047 349586384 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 37621.8667 15146.1371 2555.9562 7423.3884 4282.3429 3884.4152 4207.461 6244.4957 96744.2048 5736.7693 7444.4621 6216.4406 3931.6208 3931.6208 3889.0764 14640.6837 5739.7501 16131.3249 8891.5614 7195.8007 4982.3632 5212.3517 6641.6786 6874.8886 14862.0632 4424.9771 8777.6935 3001.8299 5666.2985 6738.8162 4741.3443 60440.4732 359738155 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 12260.2897 33308.3057 7532.8432 7586.2943 7287.8461 2457.4692 6121.2017 11410.6107 12638.1732 5133.3737 398006.7375 11054.7641 8355.4429 92330.8241 4416.5746 4416.5746 6270.7101 16162.7774 16719.7371 12930.5545 18198.5301 13154.5255 6216.0363 11657.6587 12695.6733 4391.5394 26766.2382 9590.932 12150.4123 6850.1304 10706.3918 8712.9445 6585.0964 17961.0501 18034317 dsrB Sulfur sulfite reduction NA Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 93386.9645 29764.7064 35207.4435 75720.1554 75421.3453 18924.7932 38384.5431 80800.9369 38390.0312 80233.96 61992.9578 46516.9602 1880882.0642 105480.5376 66239.41 53323.0644 59220.096 59220.096 493636.4664 97218.9218 43427.3426 689866.8981 150464.477 46436.611 26622.424 262291.0664 56247.5526 100338.7413 134849.4164 225299.0655 81331.8783 53043.0752 56095.4082 213790.5248 112450.443 71625.3137 398155907 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8247.654 6431.6048 19980.2011 7385.7982 8209.9901 4167.6433 3558.4953 3477.1286 5773.4233 8288.0443 118193.3581 7537.5476 6552.4177 9003.0236 4310.8518 4310.8518 2866.7424 12080.2066 8329.9723 11082.5991 8850.9349 7838.1565 5360.0407 6197.3085 11362.0244 4876.3289 15391.416 8303.5418 12491.8426 2825.6885 4607.5258 7203.2223 4962.1637 9336.8534 302038697 ppk Phosphorus Polyphosphate synthesis NA Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 14521.103 7624.2284 5188.9845 10228.9536 5262.7029 2711.2599 147364.9724 4517.5326 4056.1985 2627.4134 2627.4134 7520.3675 10447.0976 2967.3567 9395.3668 10462.3891 5062.6579 7053.5689 2590.0329 2938.5206 3910.6934 334104057 proO Organic Remediation Aromatics Other aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 4829.5892 6245.44 11745.9988 2290.1916 2469.2101 3656.7523 2224.574 81893.2381 21064.5379 3253.9015 2425.376 2425.376 2493.8643 6188.5208 2923.9571 4885.2453 8637.8909 2451.2553 24089.2772 3654.1064 5995.1474 166408388 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 51851.48275 44725.83825 7138.09785 26889.9816 7152.885 13025.1578 58237.7647 10932.2057 14937.67935 22504.46565 32072.2178 573793.86135 33193.18955 33447.95695 53441.2011 32918.6898 32918.6898 28772.9934 81000.17055 12410.0593 29064.38695 52917.2639 26133.7284 20539.92995 26437.80345 42626.73515 25785.5648 56842.11735 48264.41865 29333.8014 231795.2892 28401.21965 25733.92085 15133.54105 26942.81005 104303914 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylella varietas superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylella; 36062.196 3035.8657 3888.0465 10451.1548 3215.528 3215.528 9152.1694 3456.5314 6996.9138 5306.319 2791.8871 2801.5512 114762331 tktA Carbon Cycling Carbon fixation Calvin cycle Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 9579.4361 29022.9854 116634745 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8063.6014 8853.9632 10778.5189 4304.6135 3826.8851 6242.1534 8518.4578 7372.1687 233802.0464 5023.1352 13449.2388 6217.8031 6217.8031 4847.3745 14177.6577 14937.4589 8299.3441 12666.3179 7650.992 2986.5058 11315.5653 12361.0374 27366.9495 17222.0728 8862.1267 11413.5776 3306.4559 27814.6722 7219.0043 3234.4401 9133.5628 385151758 arsc Metal Homeostasis Arsenic Detoxification Hoeflea sp. CH14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea; 8899.2842 11344.1065 4918.5466 5047.011 4772.3627 3020.3231 5315.6155 2504.5953 6113.6091 10480.466 2993.9506 99774.062 10299.9584 9295.5403 4834.1422 3447.1286 3447.1286 5965.2154 14477.2641 8663.5274 9381.114 8151.7201 10957.6053 3137.2617 4720.9539 14432.2592 4290.8001 17590.1896 10506.156 12611.1163 4506.4297 5408.3218 7052.2699 5025.7963 9490.6893 21225075 badh Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11406.3059 8033.3398 6170.7035 31793.3784 4624.1549 6581.2088 2565.7931 26601.3597 13588.6008 8016.3255 106485.9246 10105.5914 10190.3481 11554.2126 39087.0351 39087.0351 13494.7629 20857.1605 11086.6157 10551.6462 21077.1601 73836.6693 4050.4395 10623.8649 14517.0202 5759.6249 38440.7853 17706.3474 19431.5859 6367.4857 11800.3172 6776.797 16079.3997 15676.1176 295690922 mannanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 7735.3759 6290.346 29267.4487 8453.197 3553.2336 8086.3878 5084.1513 9364.0582 10214.4969 18392.6973 166464.0839 9555.653 10399.7247 9202.9726 5809.4747 5809.4747 5703.1321 15747.7815 9846.1715 5639.6309 6494.1887 6903.6552 3244.7926 7555.0188 28804.2191 4954.333 28960.0884 13905.2201 17496.7232 6341.3266 7947.6635 5794.7372 4943.7464 10201.8003 329889569 terc Metal Homeostasis Tellurium Detoxification Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 15017.8436 5830.6299 18443.1384 8885.3157 3536.1167 3949.6703 5220.579 5700.312 5440.9305 2848.871 90879.0356 7243.0126 8227.9505 2587.9152 2587.9152 3617.5925 10108.3671 13738.3989 6736.0109 5979.8509 6966.6918 4676.2355 4379.4601 11991.883 5715.8851 41369.7809 10781.5981 5682.4939 4530.4598 11213.937 4177.428 30359.7036 373851190 amyA Carbon Cycling Carbon degradation Starch Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 14465.3619 174773.6541 7586.7491 6843.9882 31940.792 4645.6105 6791.3347 44520.1083 71171.0445 5918.3178 4564.9759 8542.186 8814.9433 13746.7738 13746.7738 7009.3814 17004.5057 5763.3426 5445.7213 27750.5126 7353.3565 10951.7794 10967.866 14318.8023 10193.4254 22243.305 57953.3202 11424.0706 8595.0717 13964.5399 9031.695 14676.3403 8773.8141 86574074 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7646.341 8207.7754 3181.2863 5101.7503 4131.2844 5830.9298 9848.1113 94165.6573 5769.8435 16101.2078 4675.6902 16115.4299 16115.4299 4681.6907 7468.4212 5531.5326 11280.7111 26260.7679 9818.2789 3192.4442 9716.938 8861.6051 4913.8831 15513.4349 11306.8442 7506.2613 5555.0111 5568.4443 10420.9489 7390.744 13823.444 225039282 bphF1 Organic Remediation Aromatics Polycyclic aromatics Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 29139.803 29282.6837 2789.8746 2556.5048 4941.6111 3830.1884 5359.1076 7022.8795 81188.1128 4018.33 8435.7793 4671.7913 2668.1814 66191.9667 29069.295 6716.7763 61204.7981 7740.102 3849.0518 5695.4067 7145.2024 2492.5588 10321.7627 8036.8447 40760.4903 9986.3525 5952.7617 23747.5625 2025.5387 19225.0673 337256261 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 22847.1484 33906.8144 7332.1918 35600.4361 92348.9703 28924.6088 17444.4777 30615.0419 7368.193 14922.8073 25641.3689 18045.3828 699330.4147 24795.1632 18043.2719 63374.7792 33333.4445 33333.4445 13742.5883 33121.0259 20523.2712 17548.5743 21520.2305 34221.8535 10013.7986 18208.0269 37800.6567 21703.3113 41642.8905 39501.5543 32769.3699 11127.8437 20313.9242 18871.8096 30482.2503 16237.6912 359787227 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 73433.882 68421.2465 41466.3075 20195.2224 233684.6344 13337.3083 13734.7187 42590.4687 19143.6349 37442.7148 22050.3423 20385.1523 1309032.2363 23421.1861 40073.9076 33171.7915 21180.0827 21180.0827 12283.1114 30178.6408 19833.1672 16684.6225 15891.4584 20362.4306 15133.5722 37072.7405 36583.9361 17812.4335 73006.1045 34844.2039 38104.9895 13056.4391 19481.5967 20974.8115 10269.0991 28853.3834 219810259 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11939.4449 6429.7943 38899.7301 15804.4703 11115.5627 37556.1868 5323.524 9066.1118 15578.1509 7918.3046 264355.3205 12001.9299 10770.4391 6119.1665 6484.0755 6484.0755 9420.7779 20961.4127 15803.6794 12151.4311 21030.7541 15914.5402 7226.6224 8841.6216 16729.7111 8652.3453 25969.6781 22991.6934 20558.1332 12529.194 8560.0556 12158.8058 7882.7671 18441.4492 206678291 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 24770.3275 18412.8463 9095.1601 21555.2946 38189.4903 13924.6508 37827.7751 34177.4232 19979.8778 42330.729 17225.5631 842906.9497 25430.9047 39501.6294 118125.2163 35190.2435 35190.2435 14954.7182 46808.471 18021.0507 14263.1853 29483.2361 13000.798 30967.4551 28473.4552 21844.2212 90632.0236 64289.8145 14030.8441 32872.3251 20456.656 29577.9788 20837.4079 25574.2578 20597.3685 83849318 arsc Metal Homeostasis Arsenic Detoxification Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 9520.4877 2024216.6582 146301.4034 27726.4392 8364.7111 9261.5501 78798.1601 3836.5525 8329.449 3100.4 3100.4 21350.5163 94921.2755 10877.9752 6422.5513 7232.3858 15467.0273 2898.8623 6336.1407 22541.2812 7770.4027 31967.4938 14912.2342 12043.5286 7038.6228 13392.7412 449682.1693 4633.9284 160897232 xylj Organic Remediation Aromatics BTEX and related aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8336.6905 35899.0816 14053.348 14102.1121 11700.6564 17269.2937 5452.0673 9512.4783 4866.6096 28830.6413 213902.3523 7593.266 9015.9671 8492.5849 6783.6988 6783.6988 13234.1489 4404.994 15704.3858 119787.0019 3624.1717 5738.9726 15184.7579 4987.7485 17684.7547 7181.8737 13631.0688 5060.5582 6082.0229 10883.0422 3030.53 10980.6729 226943625 bphd Organic Remediation Aromatics Polycyclic aromatics Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 473475.5514 162294.4004 359889.051 492731.6744 399998.0143 555680.7336 424940.8814 574329.5875 304100.5649 241280.1356 422029.046 269590.6908 6826528.6221 420702.082 464574.8642 876975.8878 498126.4407 498126.4407 467262.6345 460630.2563 361549.1099 705350.7241 1500572.5112 287322.337 453718.6381 241076.4752 538408.5028 267090.4339 1033556.2759 451210.6158 417979.4605 242447.1978 241967.8543 356943.1226 262532.5231 844753.883 77359127 cysI Sulfur Other NA Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 12940.0394 8131.4 11360.5494 9216.0775 7570.7216 4868.6551 10709.3542 13351.6662 5677.013 205215.173 8164.2745 10500.9054 6245.276 11016.6907 11016.6907 6981.4551 21363.7816 10859.3233 25908.5471 14963.0753 12325.3284 6914.9501 7309.1414 21420.5178 6137.1648 21708.9687 11568.7097 14604.4115 6012.2797 9017.4334 7240.9644 7221.0172 16132.6641 145596737 mer Metal Homeostasis Mercury Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 38842.4421 1067455.2949 17647.4208 33026.7313 5288.8539 13573.6715 7413.3372 7744.4184 46168.5233 150553.713 20077.4418 481008.0446 31597.1886 13944.9715 28218.4 12406.9324 12406.9324 12908.5324 26844.4929 21308.8493 18198.3485 25356.6914 23393.4066 15507.1946 10191.3708 20483.5437 9860.0867 45308.7527 30413.4485 22285.1905 8854.6308 13638.7628 25412.3095 12513.1699 22997.0862 67901318 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 17246.9687 10233.6301 8950.9109 10825.226 11579.7569 8769.8386 8145.6354 9957.4696 16061.7103 13356.1493 263628.9512 17516.3478 14118.453 16426.3048 74997.0582 74997.0582 16806.9997 40169.2124 23713.9147 40251.5559 19354.571 19105.9042 9082.2902 18154.8419 21981.9443 6936.1341 38339.0143 21536.5645 27677.9218 16454.0095 10305.434 18031.4938 6918.2417 18729.2409 152967019 amyA Carbon Cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 5556.9155 2044.0079 2607.5411 112701.8521 3700.2819 8081.4039 8081.4039 8880.379 3468.2636 4490.724 4788.6556 4645.8465 8707.9064 3701.6186 7217.1624 13898415 dsra Sulfur sulfite reduction NA uncultured napthalene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 11216.123 17319.119 8992.4108 13567.2793 3477.8183 20683.6306 6128.6681 3629.3765 13903.8943 12626.5935 12626.5935 6355.0164 3937.6694 12320.3871 4445.4385 36205.0974 2364.6094 11956.3009 12562.5547 4069.2305 7528.5499 3606.1586 6616.4287 3188.1158 2337.3885 5096.6019 153962928 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 5365.5955 9428.4253 29738.3865 13743.9858 44913.2855 48708.1095 11994.7585 4428.843 205667.3464 11383.0568 14557.5986 11862.6747 47040.0694 47040.0694 4603.6982 13320.0168 14184.2581 18410.733 11604.1643 8455.7435 2926.0079 4446.0701 23443.2449 6748.94 20539.0528 12638.46 13077.6813 24953.7966 6003.3733 5224.1264 6071.6373 14031.2975 356481423 phn Organic Remediation Herbicides related compound NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 20036.7951 9366.0412 20314.5293 76278.1454 16024.8673 6855.8501 20707.1047 15750.686 15608.2403 29726.0419 24130.8004 610932.5429 26972.5771 20699.3953 103689.2029 24428.2494 24428.2494 48038.9777 35552.7907 261518.0631 30732.3853 96912.0504 13273.0639 12140.839 15055.7126 42397.491 20943.8672 80963.144 90982.1264 36686.412 12633.6179 15873.3573 25759.2835 121338.5269 17483.3498 291197130 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 147545.6136 13022.8016 108945.1571 26934.0832 54147.3026 24114.99 24161.626 14271.8361 21980.9273 49133.2021 16840.8866 402386.1647 33732.528 23370.4763 17387.6961 63295.0974 63295.0974 24014.8649 38918.2357 27860.2493 83833.1816 46316.6516 131480.729 17132.6908 17903.767 35054.0102 89730.7417 124619.7426 51523.6431 37891.4443 16948.9517 25981.5245 22613.0857 19219.129 64421.2227 114050057 vana Carbon Cycling Carbon degradation Vanillin/Lignin Streptomyces ambofaciens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 593966.9188 76726.9795 369106.6655 218443.8184 162201.1509 90117.3759 153630.0014 265847.5322 236398.7447 341102.513 243188.7604 205037.2229 4568644.2624 203435.9754 348689.6685 429230.7321 334404.4648 334404.4648 147488.806 220339.7698 218170.8292 157161.4739 246729.0254 264970.2828 129833.5949 130342.0758 180476.1155 114677.1728 425463.9473 205863.7294 412509.2016 88437.4277 399514.7645 240955.1633 239513.696 202901.1977 2473 cutinase Carbon Cycling Carbon degradation Cutin Ascochyta rabiei superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella;species:Didymella rabiei; 22066.3323 9762.4739 12183.3598 10138.5056 7471.3057 9639.0822 6980.2512 4845.1089 3787.9623 174045.4728 12723.8293 9852.4863 9326.6813 9326.6813 2407.1743 5375.1631 16341.2602 6724.5759 10173.2138 4132.7492 9337.5173 3855.838 13783.2105 8021.8903 30327.9747 3757.5283 4306.397 3304.066 2159.0376 383764020 atza Organic Remediation Herbicides related compound NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 21319.6768 11605.5983 19221.0648 16896.0936 19985.5469 25162.1662 36077.2983 17447.1269 12013.5033 13765.5103 19016.2303 67769.4881 433083.0159 41946.5716 23140.6821 14641.4357 12559.434 12559.434 13388.2391 27354.6964 19465.8428 21318.693 17282.8097 33980.7457 12951.3411 11287.1153 31362.5286 17055.9646 33503.9637 16195.0056 27549.5456 10853.6568 13714.704 24886.9471 12101.382 25847.6388 83972372 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5004.1415 8070.3257 14140.9839 3970.4394 4301.2774 5806.6967 2748.9225 92079.6077 5164.6731 5197.7682 2825.3257 2825.3257 5076.4229 10942.5569 6134.4533 5321.4523 6538.4837 6246.2077 3813.1008 3053.5686 8551.9116 3014.9552 14394.0328 6419.9901 9385.9392 4583.2542 4916.8157 3409.7345 8529.4137 353221780 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 26925.5599 16507.0887 23012.2372 10042.8784 3927.2813 4349.9297 6775.1136 5109.9357 10874.3576 7450.2573 171820.4247 9923.726 8514.0203 15568.3774 4741.0598 4741.0598 8700.6902 21605.5857 25720.3844 19528.6933 15767.0401 18190.5694 54575.9011 8439.6626 13462.4801 5798.6535 6682.2688 12117.4093 18150.264 6498.3996 8840.1947 13797.6618 5892.5709 92527.0258 296028071 arsc Metal Homeostasis Arsenic Detoxification Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 12471.2334 5994.7766 11113.4187 11834.2725 16833.2482 9860.9308 15507.2656 5109.4095 11715.8097 14983.0864 300758.4432 9059.0792 15537.5374 11680.2941 11198.7793 11198.7793 7446.3245 22212.9546 23198.295 7489.1251 11028.6076 61984.4404 9076.4493 13128.8159 13195.8189 7714.7746 22573.2431 14994.5563 13886.2519 5188.9743 7782.3708 10282.6723 5773.4689 34350.7755 324316626 arsc Metal Homeostasis Arsenic Detoxification Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 4042.1414 6146.5985 3572.0705 3161.6885 3175.1737 6107.5198 6556.7746 2727.9742 82596.7299 4678.6651 4292.6899 2188.8565 2188.8565 3128.4632 8356.3913 7429.25 5146.314 7108.3777 6269.2427 2667.7271 2698.5675 7051.967 2594.4108 8396.6915 7304.5455 10387.0093 3479.4737 8818.3743 3931.7593 3749.9968 5629.0625 333932294 cmci Organic Remediation Aromatics Other aromatics Serratia plymuthica AS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 35959.6954 10485.0535 30885.5501 14382.4052 14189.7443 18619.0776 26915.2289 25053.2741 92508.6068 19043.0629 46704.9077 142938.5454 44969.3406 13747.6167 26814.9327 23138.1345 23138.1345 8963.6543 34922.4655 21602.0749 20098.758 106971.9191 14721.4894 15327.8504 14453.7315 34577.5101 24004.7224 339282.9018 27718.1024 32148.7155 8942.4082 14800.9033 15915.1272 12068.8035 25788.5809 74056882 dsra Sulfur sulfite reduction NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7391.8581 5113.9325 4799.9785 11876.0691 5924.2404 2511.7614 72010.5391 6792.7371 5164.0466 5164.0466 4066.4493 15555.234 8513.2961 5065.9503 7261.9142 9287.056 4482.4605 3334.856 8384.1822 9859.3778 16376.6511 8612.4239 7131.4412 17602.0689 7819.982 3587.4792 3382.8189 8195.6226 32307669 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5284.5794 6293.5241 6171.4597 6827.4468 14173.5158 43930.774 43930.774 18428.6993 8772.3467 9627.6262 3425.4429 2951.9691 2907.3631 14026.6589 6850.5584 5085.4434 3118.0737 2177.8275 37980.0253 66801997 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 178172.9322 912540.6637 120146.8487 77087.4009 117484.7091 54959.9569 70525.653 106924.1905 103533.1152 110499.2174 218907.3997 109328.2937 3095118.2756 131113.4356 160920.7979 256308.048 159826.52 159826.52 78052.255 211638.6122 76874.6555 217834.1908 191802.3432 286156.0373 85292.353 85613.0712 142930.8908 80878.1769 275838.2376 78975.3678 211200.8969 59611.9745 96988.6758 103426.0081 96845.2348 126383.0584 116204223 nirk Nitrogen Denitrification NA Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5214.7037 4074.1068 8068.1955 7720.8656 3043.6083 4194.7351 5739.6896 2428.1945 102426.7932 7862.7306 9937.7289 3920.9498 2464.8178 2464.8178 4694.7582 43537.6335 6729.0292 5137.5908 4582.5817 6712.7281 3069.196 3060.0401 9624.0693 8247.6705 30727.8122 3543.6982 9016.4534 3632.6424 5522.3718 5379.6238 2816.4094 6381.0337 351000844 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis caperata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 5609.7159 3090.1999 30062.5245 3169.2525 3639.1864 44332.4963 2527.5888 3715.9936 3534.1282 8665.5193 3655.0875 10190.5772 5475.7105 14727.56 8278.3104 6183.5568 4019.4362 3207.8424 6450.1055 5564.6708 379720568 b_lactamase Virulence Antibiotic resistance Degradation Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 26484.7715 31419.9728 12036.7556 22278.5884 19924.4683 194317.0464 34796.5317 16259.1627 22340.4391 30715.8952 34263.5667 282371.2588 59972.5727 28530.6352 38492.6889 28801.3307 28801.3307 16639.7547 50002.9959 20790.8826 43113.8721 31481.1281 29710.9041 19461.9558 34234.8848 29040.3235 22437.769 133272.6157 25644.1698 42000.7756 14331.6318 32975.2515 29645.4925 29871.8562 48148.845 91686245 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 14805.5186 42883.5135 9143.2948 11956.8897 20970.7121 162870.6189 8942.3638 13155970.4481 9398.0203 22042.0269 20424.9391 20478.0629 20478.0629 9815.9888 56613.6806 19466.4347 13646.2976 27536.5167 22828.2057 7669.5312 10099.2953 15993.6405 14805.4022 33764.0361 12374.4596 18674.4069 6678.3442 13929.7469 10339.3147 12586.1224 15059.5142 329573290 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 10975.4307 11366.9832 7239.214 8566.1229 12002.9645 8854.0009 5453.7166 8966.4697 12200.7823 6586.0848 186210.0673 11477.7419 10001.7929 3726.8821 3287.508 3287.508 7857.3511 16629.8378 12938.2925 10963.6313 14816.4824 13916.8937 7416.3798 9587.3654 72405.2303 7864.0783 26802.5964 8171.1896 13530.309 13911.9825 6791.9236 8492.9942 7637.1203 24190.7331 87307590 RgaE Carbon Cycling Carbon degradation Pectin Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 27252.786 28659.9775 15378.8235 129638.2966 7454.3642 10066.1217 17652.2127 18397.5614 11153.3263 26458.8837 20011.2742 336955.028 22637.7617 12620.3504 4907.2457 7910.0072 7910.0072 18578.9243 31242.7376 21207.745 11028.9749 18935.7215 15639.515 8210.1711 5528.6693 25497.0622 10175.5972 37336.4723 23624.1636 23951.7033 11674.6081 14211.6197 10061.7094 30876.9944 20904 156233303 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 23984.8598 986846.3021 9929.6623 3576.8923 3982.6851 25048.473 5999.9345 449858.046 8997.0184 5439.8462 13941.8833 8847.6824 8847.6824 8460.8854 12364.4374 5672.73 37641.9395 41392.7359 12445.1515 8622.4846 3781.211 14546.7767 22789.6508 14451.3276 31454.5529 12880.8665 5741.9235 12182.8598 9694.2927 5434.3367 51812.951 387966950 nosz Nitrogen Denitrification NA Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8482.8651 6702.2746 2473.5739 55542.5568 6107.3025 5740.5097 2469.2349 2469.2349 6174.491 4807.9191 25259.8032 5130.3446 3647.8032 7914.3168 2652.6883 15607.4043 5744.2308 6683.4054 2820.189 5424.1309 3802.566 2967.7991 5277.7135 377560846 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 4560.9979 2250.6334 2377.7541 3345.9823 3893.0568 143732.2067 4038.6554 6272.0103 10968.0286 6868.8281 5844.4143 7751.4014 5118.2195 7521.2294 5527.4915 7578.9853 32236.5947 4701.1866 8019.2433 4054.242 4301.6804 4788.2433 9142.4726 7129.6505 295699743 quinoline Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14078.1708 6662.2429 19117.7269 11460.8872 5547.9613 265655.6124 20244.8297 8318.9095 11095.7022 16676.7638 10228.8291 201021.8877 21549.2003 11924.1963 8246.0317 6203.6365 6203.6365 14423.4181 24832.0823 13736.9975 27313.0118 19633.082 15108.9404 15129.9309 8750.2892 45637.6468 9244.4674 30807.7021 10560.6571 14520.3215 52549.7034 13008.8645 11239.4231 10773.506 22210.441 39933736 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5965.1237 5563.3841 4967.8513 3328.3393 7319.7286 4665.618 181338.1062 5499.228 6324.185 3846.3624 3846.3624 4730.5932 12130.5368 6509.6317 6333.2676 7802.5973 5550.8514 6020.5091 10360.0257 3071.3041 19158.5623 6465.8925 9400.9572 3750.2141 3997.5294 7084.6877 3575.0925 9521.0431 16506204 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 54035.4653 20313.6433 45789.1815 19319.1083 10523.4833 23882.1345 44526.0855 11473.4907 47707.9467 52489.9663 55911.5914 422051.5666 39410.2922 62392.9448 72578.8105 196247.8493 196247.8493 21671.0866 90028.0329 48523.9269 17722.1892 65483.3463 176339.0151 17362.285 46261.9464 382492.8109 27248.0903 177817.4771 81817.6999 84981.5823 32943.2623 38274.5904 65325.2222 19104.5504 24948.3633 953231 catechol_b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 188412.8477 18776.3771 117032.0252 52414.7101 109713.4442 23371.4823 117978.9685 228824.2349 142262.5703 49947.1976 67657.8344 55494.2233 1095132.7245 64501.6015 127792.8374 97416.9242 58843.8752 58843.8752 46583.2873 114341.7986 96180.2334 48668.5369 345112.1732 59479.2361 39499.7761 54081.2459 65135.4902 193507.1233 487015.6438 67173.7447 80168.5616 35431.1823 74782.1329 79237.0334 41502.6475 142355.5688 197626731 nitrilase Organic Remediation Aromatics Other aromatics Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 10620.7445 5370.1124 2938.685 5392.896 6511.0628 86102.5181 4285.024 4863.5635 6850.7041 4381.1292 4381.1292 3206.0945 7829.0541 61098.7268 2251.2433 6993.3578 10103.4933 10701.9074 3265.0952 4522.5585 379989489 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5962.2951 6529.9367 3195.6186 14165.5153 339006828 terc Metal Homeostasis Tellurium Detoxification Brevibacillus laterosporus LMG 15441 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 6390.6661 89321731 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 12187.0785 21244.0175 16532.7547 7899.0978 60501.3894 13730.2276 10844.5639 16264.7701 20442.9113 7136.55 225854.9405 166222.7296 8099.4164 17840.0653 12498.7463 12498.7463 8096.6532 15071.4728 8879.699 10046.8487 74138.9469 16571.9791 5776.2216 11018.7273 11771.1608 9053.3041 32893.7175 17699.8005 15147.5924 6185.3913 13188.9076 22100.8194 12265.1439 20674.4583 114225644 PRI Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 11506.5 55142.2871 20827.754 13184.1283 5485.3504 6919.7618 22020.8039 17376.3386 8648.9385 15976.8649 5432.2847 218719.2373 12228.6471 21530.4204 10656.4207 14173.127 14173.127 6739.9522 17553.1981 10745.2787 15399.8851 9961.0858 13828.1193 8713.1257 6763.0736 15542.8219 5783.4543 23382.5192 11538.3065 17864.785 6393.408 8916.8586 8946.4836 7096.8269 18972.7423 196249146 cellobiase Carbon Cycling Carbon degradation Cellulose Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 36980.1596 59813.2517 5710.4976 6283.603 22030.0309 89517.6305 3694.5266 11755.734 49367.686 21364.5475 27434.9439 22136.5697 470412.7519 14641.8916 23311.3595 23819.9654 24606.4345 24606.4345 20351.0707 82496.2023 18760.9914 541358.9409 19262.637 30570.3775 11759.8692 12288.5407 19189.5935 52139.1939 39444.9358 23104.796 62164.5711 19932.6739 26514.833 30543.912 12381.228 68976.3916 214044111 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 76659.2685 13532.6387 348928.362 36593.6885 340274.4143 147408.1877 27141.325 71950.0385 42199.9952 78777.1638 58371.3839 75742.0235 1422089.4886 63557.6437 86740.2822 119390.4288 105185.2596 105185.2596 213087.9355 48971.4186 32583.7535 54331.1784 48013.0409 54175.3643 25730.4385 56082.4954 136020.5158 21306.2001 113934.578 63738.4241 167939.4261 33722.6573 32562.7419 50250.8544 19596.502 30183.6779 384190211 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis BB-12 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 140462.2083 37606.7771 229521.1482 104594.918 196706.7383 228686.0992 128152.7629 140799.4451 206370.2891 110771.8154 124620.0171 225719.0353 1335413.6357 220828.7607 798434.626 123270.0388 239317.5914 239317.5914 146976.5118 118212.2483 127052.5932 126596.4193 174532.29 65739.6467 104952.3408 74551.2048 117966.3769 137523.3818 540605.1228 119410.8876 156443.0992 110280.1487 110907.7738 108845.6213 60513.9324 261385.5272 99030585 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4340.4163 8239.8968 10377.0143 10011.4139 5108.025 4082.2071 37441.1269 4978.3292 92495.3992 11855.8334 6031.7882 6500.4387 25367.977 25367.977 2988.0691 6575.9556 3922.7702 5227.5363 3293.1071 14415.8427 12539.2242 5115.6704 12013.9864 6105.8786 10503.2975 4845.139 7101.5209 9629.7184 3938.9934 8957.5983 94313984 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 16175.8601 26971.2132 11148.2838 9885.3659 150980.2286 30673.2208 4153.4934 7892.9711 7330.6001 14130.9323 8994.5613 14837.9485 343116.7841 14199.5296 13514.8992 16219.1243 32447.786 32447.786 8208.8677 34869.6718 12749.53 91588.6149 52257.7249 29488.9824 7732.2764 8862.7406 17169.2401 5426.7917 51066.9509 33942.1949 26321.4715 6547.3954 24804.1193 16402.9458 8993.9854 36045.068 118424460 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21069.3989 12807.2401 9558.6089 6432.8749 11114.7999 21097.1511 9668.2033 31559.0857 13804.8455 10475.4829 7355.6212 342793.0938 20212.9953 12910.6067 16297.2851 5883.1503 5883.1503 11199.3899 20423.4128 13434.0474 23556.4312 15812.8103 13430.4575 7289.4523 5430.0482 17086.5979 8309.2495 29534.3293 24173.991 16096.9193 10661.2251 8542.2376 12212.229 16357.0913 20622.1866 55845975 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7118.4003 2750.5609 325526570 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. TJI49 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11002.7393 4782.6301 18504.2485 6331.7016 5261.5741 2186.659 5498.2042 6472.0384 4127.2712 115306.2135 7134.0873 6402.7003 6002.7159 4486.6099 4486.6099 5418.3804 7903.2025 6078.1494 6163.4938 7205.4697 13435.0625 3400.6957 4276.4601 13269.2173 4724.1377 14380.2633 7089.1645 12800.5296 5295.1483 4645.0199 6760.2907 4763.3801 31368.5375 33391367 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13419.1337 15391.9961 11628.5839 10878.3581 5006.1531 4756.9138 6406.1247 6308.2165 145108.5362 7735.4907 6516.428 6810.757 7738.8228 7738.8228 7358.5117 9698.6152 8972.1768 12574.6435 25750.6307 34009.5511 5137.5646 5837.9024 14437.943 5941.1428 25991.0983 18028.3738 18483.495 4750.0814 8098.6217 12710.5986 11634.297 9478.8202 256377382 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 6767.6148 131684.2484 9960.6702 7537.706 8973.8519 2851.7051 105548.1394 2526.1243 3930.8648 6412.2846 3608.8888 113982.674 7022.0593 5401.111 5939.8769 3611.8092 3611.8092 5081.9423 11897.4941 7870.6165 15289.033 4438.677 3179.9462 5549.6651 13223.6279 51410.4304 23351.7388 9925.4646 13449.4876 5524.8655 9214.0373 8637.4202 15197.0821 19962.4238 332672129 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 28479.4815 53859.2417 188588.5579 45889.865 8718.1468 38831.0198 20000.2658 21187.3587 23010.9612 38661.6514 63249.4184 574193.0797 139462.0831 35893.4904 39595.6845 45426.8251 45426.8251 49440.2382 78768.4766 63599.7888 62051.5359 64935.7673 150683.4948 31395.1536 34352.7103 36841.4309 42084.7145 99407.1444 49652.3033 59832.3664 28726.329 42740.5334 325330.2267 41113.0528 24131.6376 16329365 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 20738.0937 76032.0349 10605.4507 37489.4136 22466.1557 6100.8554 10629.0337 4991.5108 12226.0157 15624.5043 37853.7709 347907.0863 17220.0332 21183.6294 20045.4938 13193.1493 13193.1493 12868.0034 40064.7391 18591.2617 19018.9521 17842.6242 13982.8601 16689.8446 28807.8241 26201.0951 34588.3268 38016.6232 20256.1524 28860.2962 11990.0708 20236.732 62369.9792 10736.2713 26906.0383 323364596 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4274.1774 2403.5163 3307.8727 5491.1615 3045.9422 5121.1209 3034.4187 3034.4187 3005.8038 8277.3567 4167.6913 11139.9911 2283.0208 5804.2793 7385.2008 7884.292 3921.9662 7585.7041 2340.9677 3794.5457 4488.7866 254506323 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 12638.0427 387138.1813 9951.5141 3913.0377 99011.2693 18410.6163 2633.9797 10432.6079 3819.4082 7061.0892 15228.2985 4410.8597 4576.5187 13133.6291 19048.849 9313.6905 18011.1532 5680.095 374425368 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5274.5296 9836.5813 9276.1658 4602.0917 3236.6392 3485.2688 4590.2659 10058.9839 65418.9591 7445.5323 4306.4238 4306.4238 11040.323 8910.7125 2553.4932 2765.129 5905.4376 2601.0929 13645.4987 5668.8986 6892.0115 3000.6152 2242.4165 7351.3382 74038446 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7086.3696 6138.1068 13950.2239 3248.8952 106238.9039 2703.2266 5451.3357 12234.599 5535.148 147149.6068 298762.6081 4164.8799 5087.141 4692.5051 4692.5051 452897.5072 14398.7506 7824.5055 563065.4002 11008.5921 9303.814 23270.8859 6757.4706 10307.7968 3744.235 21253.9803 9019.5155 10772.3395 3767.0561 6175.0167 7464.0516 7469.082 11625.6384 325660443 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 268259.8877 43186.1553 238649.813 155101.4907 123936.5033 166340.9963 125238.84 415085.6095 131011.802 181201.8998 128937.4186 145461.6376 14566770.3401 525847.4467 354706.1191 392293.7943 309350.7674 309350.7674 81608.169 369199.4889 103779.4133 285200.3193 240638.5571 294457.5013 427420.6524 351989.8526 176837.2101 76195.3967 317633.8092 202258.794 164971.4795 254716.0128 108836.9192 199323.5555 91166.3509 334433.2755 223963251 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 5914.808 46920.2123 4543.1736 19238.2203 12302.136 7021.2304 7021.2304 4896.8007 8619.9532 6608.4854 10989.4875 5160.8543 6921.7386 2522.0122 9028.2392 19472.8603 11328.091 3624.9819 2220.3931 145555695 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 29579.2348 15879.3908 12345.3557 16163.9281 15867.8318 4594.6887 11111.0851 13165.6776 7034.9867 14647.7996 25099.2885 9573.1665 286639.6883 16965.7096 32760.1675 57881.2599 35751.8178 35751.8178 14251.3805 24312.2526 23301.9405 20200.2079 22834.3861 33886.4727 12296.7083 12695.9828 58357.7645 17478.9103 527856.8653 44496.0582 62118.3014 13481.784 11836.9557 57361.4447 11495.7276 809927.1869 312199439 xylanase Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7375.1972 728017.7576 81986.4935 42626.415 5878.3858 22390.355 16308.3756 12235.4962 7180.1816 35228.5065 7463.9189 309501.3229 124065.9141 15018.373 18781.7807 11200.1202 11200.1202 5725.9203 16535.2331 12921.884 15949.7472 31901.7435 6656.4352 9410.0148 20560.1141 9226.7225 25962.7374 26584.322 21749.5692 4689.2458 7504.0778 13846.0375 4513.6297 17818.019 93354968 ppk Phosphorus Polyphosphate synthesis NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 16110.0283 103032.2746 11454.6984 58126.2401 11209.372 13388.0663 14864.5664 40885.0729 33395.8327 63110.1685 356759.8644 43507.2295 17673.6156 27001.261 16969.0748 16969.0748 20220.6592 24032.252 12177.0127 19001.2258 19823.0186 100218.142 10445.6232 11896.2569 47036.9275 194941.1635 36311.4601 8561.9835 22936.3173 7728.4084 15918.6438 21794.17 17047.3649 39372.8287 319413957 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9404.5381 6178.6994 6345.4733 1289724.2993 7702.418 16856.7014 9260.0159 7929.0756 5755.2797 134868.484 10566.0749 12410.2835 10413.568 8023.1021 8023.1021 5462.292 14098.8023 7918.4286 10849.4111 8128.8217 7070.3651 97930.7003 7188.8956 20011.2922 4811.7222 17611.0153 12188.0339 18461.6646 6266.708 6661.5842 8833.8289 4120.2377 11105.1491 284029980 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9859.0233 20251.4196 2176.6409 4294.4266 5119.7501 5893.1888 9818.6544 4468.3691 9264.0552 4741.5375 5157.3959 5157.3959 14620.0462 13591.6038 7669.7853 5084.6139 35925.2879 39339.3017 4470.3574 5771.75 6655.0813 11863.0982 12648.3398 6235.2385 13089.1714 2968.1237 5509.3218 6260.3125 10452.4233 5437.1406 356694275 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Johnsonella ignava ATCC 51276 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Johnsonella;species:Johnsonella ignava; 4333.9082 2706.5031 3121.2458 4285.9833 2512.5262 5776.5271 7022.4269 17959.8225 2259.3107 3310.7226 6147.493 2178.0567 2789.4633 2691.756 4464.0412 6877.5402 6149.0034 126347329 urec Nitrogen Ammonification NA Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 38489.3673 13931.9977 9257.0529 4819.3644 19773.3424 11158.6812 7637.0172 13401.5481 18126.4194 9835.1241 191390.6794 12307.6978 19657.739 12524.2484 19291.4939 19291.4939 10904.6583 27452.9513 19986.4269 11996.448 26752.0296 18347.2949 14246.4464 8714.812 16340.0377 12479.8232 53164.0739 16889.2347 26110.832 9010.7266 11812.1419 16862.7339 11598.9247 26856.6499 77379172 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 17045.2491 11135.5045 60831.3359 38221.5943 9451.1875 15566.1975 12612.4767 7286.4801 14129.299 15009.6437 8929.4275 330901.6988 15242.066 13970.1431 34819.5185 8497.3841 8497.3841 17206.844 31544.8912 21105.495 21955.993 16745.1695 19254.2102 8701.5276 7751.0121 19453.9681 10235.6511 42046.0065 16971.1294 24032.3612 9827.3248 11078.5862 16868.0269 464428.182 27700.632 411027672 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gluconobacter oxydans H24 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 9622.8077 5413.1612 7370.5192 7658.6719 7686.2491 2713.5564 24854.6665 7020.046 4733.8582 83322.4552 5991.9302 4926.0951 5622.1422 16950.6063 7792.0757 7314.2796 11004.0999 6227.8193 6070.7073 2915.0401 9221.6586 3286.619 23005.3056 6999.6851 14558.8836 5091.1572 6380.4102 7441.308 4389.1006 9974.0201 116669298 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5827.8975 8763.4241 10934.6409 9258.3029 5496.1622 4614.3355 2272.8804 84201.8805 6785.8171 5367.9791 9269.0847 6048.1009 6048.1009 3558.816 5054.5515 5862.541 3698.2149 4710.6139 8730.5193 3242.4973 15811.6585 22705.7598 10399.8576 3037.0425 3906.7454 5407.4483 2794.2578 7425.9683 1653505 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 177749.5616 159178975 tktA Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 98573.2375 12054.1889 43684.1122 1549598.2713 29158.4977 8153.8141 43544.9467 206039.6424 60106.7847 74143.0082 70270.019 50151.6957 1160040.8639 124516.1067 116873.0936 53732.2789 74607.0346 74607.0346 52051.9299 67366.6307 51140.4002 65128.9394 189705.7974 101366.8254 101010.7828 34581.4093 167043.2524 114603.7818 161888.204 162337.256 81221.1274 198137.195 45405.0554 53047.4631 124040.0443 374431.5141 399017078 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 46679.5186 8607.3061 4028.8384 21952.4574 3789.0766 53191.6913 2601.4946 8295.1782 8428.2489 17309.9948 162512.4681 27710.5609 18852.6937 12560.2966 39932.1189 39932.1189 8369.3417 16965.613 6192.8079 12486.6254 13804.0054 31205.6638 7571.2736 28015.57 22407.9537 14644.8042 29375.2344 11754.2736 49784.9469 6047.2166 5405.9719 20731.8606 32692.9149 23558.2369 56478484 ben_bcla virulence NA NA Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 18741.8015 8867.7428 6045.4195 18006.498 10182.6937 8894.1524 15944.4011 16752.5352 9436.7793 238592.7359 21437.1988 20060.7336 50422.5327 8846.2459 8846.2459 9062.8415 41171.1475 16913.1794 25177.4652 40345.6818 21084.0051 11875.6996 110792.1843 14853.8737 10914.2763 48075.5945 23548.2646 30281.0667 7151.3265 20723.1513 19943.1794 7567.7364 25206.2289 40287430 amyA Carbon Cycling Carbon degradation Starch Brevibacterium helvolum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 10980.0501 5561.7771 4403.7337 5405.7968 7482.1075 6927.3892 3524.3055 6299.2827 5690.6328 4017.9549 160041.6218 7849.7037 6048.6716 14750.1322 4947.9797 4947.9797 4933.0129 16592.673 7408.7057 6578.5651 17867.0711 10332.9063 6546.8851 8833.1258 11539.0002 5328.8496 7465.5984 4634.1687 8671.3851 4229.1752 6764.864 8049.6012 17834.9412 7603.6644 91799194 cysJ Sulfur Reduction NA Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 81824.8557 21993.9248 53726.0942 71063.984 42234.3135 14966.3544 27954.909 30475.8048 22284.9868 31886.7226 45806.1263 44176.5425 610721.626 44787.306 47421.4366 41201.7723 50533.243 50533.243 28666.7575 84172.1067 31353.0455 36067.2365 40545.9295 35385.5506 16730.7083 22438.8076 47564.3886 24773.0215 112646.3042 57297.2441 63908.015 21888.0623 36014.8152 26809.6207 23927.2165 39232.9627 83590440 dsrB Sulfur sulfite reduction NA Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 6258.8886 24107.8728 5632.4615 9516.5371 13136.5085 3107.183 8323.7158 2230.8745 3499.1456 4362.3771 31165.7927 162724.9672 6681.497 9064.1543 47613.7047 11016.3527 11016.3527 395090.7719 10179.1924 6032.9531 26759.4698 8810.7448 5871.4527 2362.3656 4722.6616 20513.8885 2623.8862 23756.9221 41649.3579 14387.7241 4758.421 4927.2645 3883.9778 2820.2536 86740858 phn Organic Remediation Herbicides related compound NA Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7279.268 7659.6826 4803.7685 4647.4056 3464.9641 37318.38 88905.3371 7499.3939 7906.4966 4441.4027 2433.2057 2433.2057 4472.3181 11185.8115 7835.5381 5333.777 9628.8706 5392.3815 4384.1285 3696.5119 8023.0087 2968.625 10910.398 7026.9824 8601.8307 4336.069 6072.4017 4741.296 2818.2855 6856.8213 359778630 terc Metal Homeostasis Tellurium Detoxification Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 4072.7053 11288.6578 2292.6679 2969.7592 9346.6009 2846.7845 3232.1927 4085.98 241258666 nagg Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 10072.4125 18455.4758 15142.7212 72855.689 6087.0856 10918.7096 7068.4984 14076.8541 13986.1272 101736.4098 12089.5202 7834.4608 10222.1471 5395.9713 5395.9713 4341.0065 15649.9628 9203.6459 8085.4942 26929.0341 10675.0556 8791.1627 9869.6404 8542.1335 7711.3757 6511.9591 5397.8003 26369.8805 8389.0012 15793.252 9328.443 8132.1619 12893.9095 171996200 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9395.0924 5843.9416 4837.1745 3467.028 2549.2755 156743839 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 60454.8535 12113.683 33862.0703 24604.8466 126962.9571 4861.2151 30014.9323 25536.4263 15335.7393 35258.5545 35142.6825 29098.2779 623327.1401 179681.1791 57930.66 54223.2178 35993.7007 35993.7007 23303.5294 51597.4675 36397.6107 27695.1211 36119.6951 62369.4842 20682.9934 19686.3912 40000.7664 16379.5027 66993.4302 32729.4445 49060.917 16824.1152 30217.4347 26859.0195 20581.45 47628.605 342816788 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 13286.2013 10560.1124 13760.7551 10087.9593 4500.4163 8013.2689 6942.6784 8948.1149 12816.075 17612.4718 4819.3678 399836.6894 16168.0953 11863.9098 5890.1296 4714.4675 4714.4675 8692.2526 21697.667 9904.855 19481.114 18284.6605 23453.4527 6973.2159 6466.2513 18665.3142 11342.8818 22895.3126 12274.4899 21083.3892 7224.4619 15892.4853 9121.4874 8077.0847 24184.3373 344943290 nitrilase Organic Remediation Aromatics Other aromatics Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 5657.8479 11044.1446 4503.9889 3993.0636 4609.8421 6474.9664 343493.6092 6335.2676 5445.7123 117960.416 8812.8636 8874.9211 5204.6999 5621.5517 5037.6624 5978.0999 2864.6578 7162.317 3382.2754 9963.7766 7279.8016 8933.2441 8430.8169 4237.2972 4146.0026 2836.9987 7894.5373 315598908 pgk Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 17433.3321 5967.0401 3730.4541 13292.093 11162.1018 19625.9149 13832.112 62319.7389 6245.7389 5198.9365 26053.397 4972.1354 4972.1354 3761.5317 13136.403 7197.6925 20822.9006 11451.8443 7129.2386 6254.6648 8513.7277 7606.3761 5851.5094 67582.4116 22785.2839 11452.0384 4653.8197 8497.4809 8915.8476 15574.3064 10433.3043 146740636 rubisco Carbon Cycling Carbon fixation Calvin cycle Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 34021.201 22895.7264 28160.5687 30816.3896 8797.3607 61255.9151 18858.77 11770.9358 45044.6011 133972.6498 50623.7135 597705.7693 106448.9544 268237.1173 84074.0108 50358.6243 50358.6243 16281.6982 76675.4734 31319.5312 18669.4463 46246.444 26432.7348 22034.0161 43354.5711 38957.0548 25555.0566 149117.4648 69356.8601 49331.5686 25729.5279 23770.8019 24168.3049 22887.7757 47815.5898 283133415 ppx Phosphorus Polyphosphate degradation NA Rothia mucilaginosa DY-18 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 5479.7784 10168.492 12637.5129 17079.0722 6286.0394 50723.2626 9981.8371 8915.2045 12844.1495 5118.7028 309436.4389 10591.5354 23153.363 8994.0679 5886.6527 5886.6527 7279.2639 16594.6342 12605.8298 12795.7828 14803.9471 17820.9968 4547.0406 5853.1636 16639.8433 9092.0921 29486.2068 15990.6413 17113.9766 8443.3131 8241.3802 8251.4873 8160.3875 16735.178 296127952 terc Metal Homeostasis Tellurium Detoxification Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 31594.4791 4476.9004 23435.5712 10376.1814 6752.3799 20131.4632 16909.2413 8830.1016 50397.0067 22648.9574 473088.1436 16515.5091 39879.6507 40086.6114 19737.8882 19737.8882 13806.2542 28042.2439 11283.3932 20531.2391 28561.7712 35288.527 8895.514 12799.3095 20069.176 31744.3947 29647.4304 25625.5841 27157.7984 131069.2173 18359.2182 43404.3992 13290.0454 12892.2456 324986664 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multiformis DSM 16608 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 6053.7809 4233.3595 4317.841 2407.459 2358.5616 3767.7959 4922.7127 76627.737 5087.4087 4867.8976 3032.3095 7545.0504 5455.7671 4115.2524 6436.8196 4236.4191 2748.5652 3023.2926 6658.3945 2367.545 10554.2125 5477.4989 2818.9666 3012.0466 4284.4125 2493.9097 7085.1749 153963034 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 111791.6188 12405.7019 21696.3126 8465.442 49959.0823 11784.0756 6532.1543 13517.167 16268.0766 7954.6536 334195.7356 17308.0615 15670.6977 15295.7309 7281.4276 7281.4276 14691.3657 24994.3329 22614.1399 76197.5891 28769.2238 29285.9839 13050.2173 10032.1156 25478.3679 9109.5178 40828.2057 21154.9849 25597.1959 12282.3467 16170.3445 14247.2624 11729.1558 24551.5152 307550600 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 5299.7101 2200.9481 7843.6711 2305.8739 4638.7557 3849.108 91243.3632 11341.8662 3603.0334 2823.7145 2823.7145 3744.2103 7419.6281 6265.1296 4479.5465 5663.9398 3501.4129 2738.2756 2830.8297 6779.1317 3289.3514 10447.8238 5406.723 5251.5857 3354.259 2932.6401 9898.7794 3041.8326 6576.0101 222524549 amyA Carbon Cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 5766.6436 2069.0488 4121.7505 63226.049 12501.3426 3844.6 4686.1091 2692.8536 3083.5916 6503.9061 4548.3948 6241.6943 6899.8341 4130.7035 3347.9313 6439.8181 187476816 cysI Sulfur Other NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9209.1134 6649.393 3721.5235 14032.1651 11668.7803 8987.9929 91995.8013 4916.6995 34861.9227 51059.4707 18860.3191 144257.0355 11785.1285 14905.6032 11461.2629 7084.8261 7084.8261 7921.9678 33469.224 8722.889 10663.7808 30052.4122 10706.5205 10150.283 9947.4198 11820.7367 18215.9027 34683.5164 19850.0214 12943.4692 5898.913 11530.8502 24211.741 11663.4475 39262.2211 124879726 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia cenocepacia PC184 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 5043.3653 3525.6934 3593.2007 56180.066 4335.5977 4335.5977 6767.6148 3683.1009 2568.0022 2528.8106 5334.0541 1830.8689 3140.7028 3541.4076 384918247 SoxB Sulfur Sulfur Oxidation NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 12988.3385 8617.4451 3537.311 9977.1135 11863.6341 7335.5544 7235.6308 4728.0752 110953.3337 8922.6329 19033.1232 12333.9867 11918.5062 11918.5062 3934.8941 32405.3056 53114.4554 4745.2731 7426.0151 5456.9319 4581.1759 4970.1116 9126.5893 33086.1592 12239.3289 4577.1244 12592.4572 3074.5786 4919.6861 11567.3827 3594.749 4426.1399 422314089 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16568.009 14816.8432 8977.0571 14130.4542 13970.6041 11128.699 10167.8391 7341.9392 12302.7495 14962.0785 7168.8311 320134.9274 16239.1165 14486.6869 12598.7134 6483.7207 6483.7207 13156.7048 22575.5229 14137.4213 16341.2072 33444.3569 23911.4273 9062.9098 8743.4279 19679.1918 8678.5139 30828.228 13014.2156 19142.0472 9588.4782 9308.5923 10124.4772 9865.3849 27178.6606 323281467 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8916.0211 8109.1658 8350.4845 32914.5008 4798.7889 6541.416 5580.9127 7968.0173 7705.4114 10191.1528 100358.802 12369.2659 7714.2207 4876.4335 3410.757 3410.757 6355.3271 15070.072 7545.4066 6774.3238 8850.0539 6413.4851 4051.3951 5308.9358 10833.7728 3319.0449 15540.3213 5162.8588 10613.4624 3918.6948 6575.7855 6352.9871 3818.4491 9514.0188 114340424 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 30774.9218 14573.738 2158.1973 7342.1799 5198.82 4594.186 5929.9907 9253.6028 7285.3957 7097.1809 2040.4642 3990.4994 388466317 gdh Nitrogen Ammonification NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 7599.0804 172198.1397 27808.7741 12117.152 82880.1322 4952.264 2173.0671 2173.0671 8474.5596 14221.6898 10077.3533 24670.3303 7572.9047 14304.8316 3506.0631 2568.1751 2789.8087 3194.1466 11967.1461 207083744 SoxB Sulfur Sulfur Oxidation NA Comamonas sp. S23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 85585.5793 43376.1369 33764.9569 73666.0141 23207.0993 85758.1341 74082.839 38544.2769 51337.852 121013.2295 55363.5297 563831.9664 33397.9287 103926.9386 79419.3228 69092.1426 69092.1426 28553.8369 173108.1287 55349.6976 157507.1085 57980.9809 238273.2047 47666.0622 42114.5745 56136.0281 34714.6643 110964.1723 78331.4408 62910.7047 43428.2396 43000.8486 36542.4666 42351.9685 973951.2776 126438200 scnabc Organic Remediation Others NA Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 12585.6328 4774.7263 11998.3856 4405.0085 5125.4706 6390.8272 4468.864 7757.9553 3798.6358 2014.8629 6252.1863 6397.6161 6317.2195 3329.3666 3329.3666 46500.9672 29012.9606 6614.294 5106.317 10659.5223 5682.5518 4026.3798 4956.2184 8789.3959 3889.3022 20127.984 9562.9701 23863.0743 10476.2543 7387.7824 9469.8774 5645.6583 14073.2352 33391293 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 54652.9306 22220.6026 67141.9288 140073.2931 139048.4231 24486.428 19155.8658 209557.0441 72105.0662 98051.5046 99656.2718 98326.1178 51501.6317 123159.4375 60696.1731 335956.4711 140078.9074 140078.9074 71476.9652 130270.0617 48363.4189 206778.6288 126108.762 110803.8955 53241.7351 62448.2746 105976.1181 62227.0053 236359.5518 75432.7994 202440.707 63626.5309 179457.8373 104409.7946 74004.6218 104958.4233 154362234 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 38770.9586 47167.6414 155533.9804 42968.6888 5763.7047 9875.1323 26052.0432 22717.0884 20720.3371 49989.7704 18776.752 491385.5775 20208.0849 17486.7741 27187.5385 22045.0666 22045.0666 10035.4637 36146.8522 12012.7105 36994.2891 32181.3858 27144.8117 12676.4733 24559.2612 30211.3176 90049.1132 56766.7158 56092.3974 39511.4266 22268.8262 12787.9981 33030.6867 20319.4816 17190.6652 224944138 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 20425.5029 7199.1369 12488.768 13457.9021 6385.1429 5992.9272 13440.3587 18048.0958 10403.6631 15570.2907 10889.2386 599338.6492 14737.216 13789.8951 17245.2849 11010.0183 11010.0183 8297.3228 18426.9301 8505.1362 15635.9445 18332.8316 20974.7905 6238.311 7958.5917 18470.8759 8729.2639 27780.9801 8084.419 18894.5588 5739.2066 8774.6886 13906.8385 5191.692 13159.8761 114544940 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 63973.5571 24096.5387 151752.9839 60195.8021 41559.5159 29481.8296 16862.8902 141152.2793 69883.7042 43578.2229 42500.5598 41559.6145 863129.3133 69325.7408 162505.1146 38966.9966 47706.5443 47706.5443 70959.7348 70219.5526 77278.6067 188142.5438 434947.9103 53169.133 59294.8874 37180.1741 74500.8846 131127.6472 405066.5216 48129.0105 48486.4324 35791.2204 37804.3728 42088.467 30427.7329 112418.5374 146406798 nagg Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11124.08136667 11460.8109 12146.0366 5600.21885 79538.8851 39819.6778 27387.1565 10732.2622 7890.82706667 337328.99785 19519.796 6416.5568 6171.1641 16481.01305 5904.6938 25826.449 24877.0684 6712.5584 5830.12553333 23905.1264 9873.29923333 21351.592 12537.81076667 8310.54303333 6952.03276667 16291.91176667 6881.38133333 21251.6166 241206442 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4914.3469 3246.021 3251.4541 4358.3097 6424.1669 3295.1789 3295.1789 2733.52 3654.8611 4283.1791 3618.4629 2475.1913 5495.3835 2911.2733 3107.8162 5241.3806 6565.0337 302344066 arsc Metal Homeostasis Arsenic Detoxification Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 5471.8621 7817.5287 2290.6635 4334.8062 7821.4546 11260.7517 139686.1761 15265.0986 4275.0145 6754.2027 6754.2027 3179.9217 20041.554 4274.4544 6238.0683 4882.4769 4226.8237 3244.9032 6813.9496 7690.6229 8978.2732 8512.4421 2635.8801 3035.8556 6228.8941 2659.8409 5560.4178 46308012 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6543.1167 8093.8893 5165.5355 5966.4924 5217.0346 2492.273 69302.8275 4300.3637 22297.9175 11833.4967 20012.795 20012.795 61366.5424 8216.7718 7590.2668 49343.7343 5663.761 5512.525 2978.4876 7056.9423 13003.808 5275.5944 11593.151 8343.3638 10893.1916 3359.8255 5706.1626 7451.6341 3088.5843 9538.7788 26278706 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13730.8832 12224.3162 8489.0315 14600.5119 4592.9279 6945.4861 6736.8306 4987.31 9519.211 13718.4199 20403.6328 157569.7711 12417.292 9272.2704 11846.1701 4275.6618 4275.6618 8734.6897 13691.1964 10831.3119 10537.1032 10387.0546 10134.447 5811.2062 5304.8633 12876.8745 5687.9322 26250.9056 6241.1698 12875.9143 6585.5014 9202.5376 11289.623 5711.345 15557.4422 89274946 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 29428.6349 14615.1719 6380.5003 5786.9246 21715.502 5469.5571 30541.1633 3536.6776 23975.6505 14056.3187 10190.5349 144368.602 22442.3676 23308.9663 38576.0588 10851.4191 10851.4191 7175.5483 194113.6382 17778.3909 11020.0078 17817.5932 7317.1681 18359.8994 16736.8984 37893.4746 11603.1413 26809.742 26308.0438 32604.1682 9234.3783 8832.6792 8862.9243 7269.1108 19232.2374 224537171 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 17837.2473 10581.2398 9175.2803 31758.1679 12979.2438 34515.4769 7899.7109 4999.2626 16394.5579 14381.1917 26685.9223 545285.492 11326.7274 14297.9269 16409.3458 11994.6629 11994.6629 8468.7063 18051.5324 14969.3852 37848.5257 17403.4399 48665.4566 6131.1056 8983.5358 29709.2899 7016.8157 23226.6057 16502.0242 34275.8345 10350.3933 12795.5403 8738.4009 10647.5642 13381.5206 256560486 amyA Carbon Cycling Carbon degradation Starch Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 11700.5679 23363.6668 12372.2223 4744.609 7696.4054 6873.4079 7766.9783 5469.5955 8261.5846 6847.9816 6060.6319 137324.9369 9928.1401 46945.1694 5698.4332 6149.742 6149.742 8596.8371 28705.316 8077.8024 25959.7161 23017.9288 8603.6694 9136.247 6050.7325 14420.1562 6953.0537 24661.3618 10860.8585 15880.2173 12874.2467 10619.5591 16328.8741 21071.4248 17181.3894 227214986 tehb Metal Homeostasis Tellurium Detoxification Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 11018.8078 22651.5309 11133.9319 28384.2562 16119.1878 9221.2757 8172.4251 5972.7914 6734.5313 6447.0194 184707.7692 6177.4182 13265.5329 16976.1936 7368.5647 7368.5647 3836.8085 20496.8121 12517.3155 5731.2352 9179.3976 2737.0324 5164.9409 16575.49 2703.8867 12081.9034 10948.1445 10726.7442 3179.402 5270.6062 22743.6294 3329.739 37703775 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 33785.005 590960.9331 11172.3202 46275.2186 10468.4637 12963.8215 7369.756 11231.0641 14252.9278 167003.088 5623.836 6142.5024 11473.5542 42592.7676 42592.7676 14508.8161 18427.1116 4494.9192 5907.823 12718.0364 57461.0092 6468.2385 13160.1534 18508.5592 14293.9381 159806.0124 10537.9929 20255.2412 3717.5372 14066.1041 13804.2518 5623.9206 14259.9727 374604385 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 29677.2098 13942.1031 28735.3222 68848.1361 8129.9166 11417.3866 15846.3776 5686.1221 167312.6618 32878.4649 17814.4462 6774.5603 24245.2829 24245.2829 7698.2505 12478.5876 9313.6107 11014.7355 13955.3178 12775.7086 4707.3782 17592.6677 18198.2183 56473.386 116728.9305 23096.93 23358.0777 23373.1749 5755.8272 11428.0717 4457.7517 12608.4248 147886024 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7289.2992 4478.6828 206174.793 2174.1074 2174.1074 4557.0407 9035.2568 5890.6328 8545.2541 12076.3592 4710.4425 2529.5382 12277.2491 3893.1845 11208.2895 6991.0261 7079.9287 7023.9064 5067.3621 2341.1344 7293.7496 291436315 terc Metal Homeostasis Tellurium Detoxification Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 32993.2048 17577.9427 15474.762 25768.524 5062.8204 10200.1233 17083.9732 16847.8509 10351.6058 30441.7537 16206.529 1067263.1701 14166.4134 30608.8082 98710.4786 24468.7629 24468.7629 9825.5688 30833.3191 38396.4149 19047.7295 45545.6975 19580.2874 14124.7377 20030.2478 22923.8198 10238.8905 43685.2929 28588.4925 26904.7792 15048.8038 60144.2619 48426.271 9001.2418 47203.0231 119960118 dsrB Sulfur sulfite reduction NA uncultured prokaryote 11211.4535 7608.9192 113935.9027 30798.7842 12513.199 12354.1163 25604.5492 8860.6507 56410.4446 37596.9819 9905.5204 233175.8626 7660.5505 9707.104 11880.6573 18227.7464 18227.7464 6793.6163 51925.9724 6809.8947 22475.5199 257212.5852 10060.4945 5870.8044 23303.7989 168979.6336 14672.5414 97974.6979 18111.2954 40321.2421 9978.0156 11013.9488 18163.2073 3838.9709 50759.8932 308225845 PRK Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 41482.597 8583.8295 14120.8746 9470.9273 4999.4087 70421.5571 2653.5308 4113.4484 5904.314 3284.9952 91933.0902 5736.3281 17680.6041 16527.9264 8889.1994 8889.1994 3743.0999 9783.5941 4609.626 4244.5746 6117.6294 3286.5465 5129.7163 12476.3859 3328.4815 12649.019 9145.1879 10397.6023 15318.2873 4376.7706 11816.2777 4174.6729 162072792 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5024.688 6941.163 14898.2054 8585.2416 6276.9104 3654.2472 5713.4709 4715.0609 6660.8717 3474.2389 3474.2389 6833.8982 4637.4699 9505.4758 6880.0314 5997.9621 4869.248 7883.6964 5395.1879 5017.262 5811.3527 381361628 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5783.0292 5964.1525 48461.2232 21733.9231 3267.2029 6867.1535 4655.4043 6104.0328 405072.0521 255481.4746 11320.768 7201.2109 4302.0384 4302.0384 3977.8636 6760.5954 7550.3687 86058.4674 5141.6672 4087.9334 10216.7335 19053.8398 5465.8625 4448.0036 4315.8252 10151.9949 9104.5247 23631.1316 300390428 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5846.986 6091 3548.7933 2129.1986 4150.0562 2987.3177 4534.6159 101405.7632 13901.7657 5786.3085 3789.5951 3789.5951 3265.7383 6499.1845 4757.6664 5609.236 5467.0544 7860.6068 2338.7459 2781.9614 9936.8127 3328.6826 8610.3582 4781.4508 7444.7193 2331.5574 4670.1452 2904.1227 7742.9187 378948978 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 22840.4292 36838.3997 2880.7546 4606.8163 3659.9484 3659.9484 17272.5247 2861.734 4226.6471 21221525 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 76572.5527 18807.5046 7102.6851 42277.1226 11436.4081 62137.9601 149616.4849 23662.149 28097.6335 26486.7063 60871.3803 4820771.3692 170494.0489 67666.4673 174287.3153 54334.2956 54334.2956 15723.0827 56764.6568 22612.1718 729423.0149 47869.6617 30373.7762 73222.5228 28892.0505 25322.4715 66755.0506 59331.5836 52760.4264 34795.1175 29778.4171 77414.3117 82985.3903 30221.5836 69697.7092 209401774 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8842.1881 4807.0699 20020.6373 2706.7649 9892.3761 4150.9516 6285.6608 4797.5223 94436.4889 8008.4441 7040.9898 3987.0753 110320.0644 110320.0644 6184.6099 12861.0453 5265.0283 4619.1787 7415.6802 3504.0872 4058.871 14524.0584 9341.7866 21011.9823 8303.5307 10312.1092 4895.3889 4869.3827 5970.0128 3391.289 12124.2871 119899116 PRI Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 56008.879 15578.1797 7094.8082 120753.012 183426.58 17519.4582 2715.4684 11168.7031 13382.741 22003.3148 94773.2238 7912.711 55575.1804 16752.09 6063.4197 6063.4197 7606.8565 18188.5873 17745.4078 27287.4432 21944.9618 14987.3548 13289.9566 10820.6746 15030.2009 14193.2592 33221.6633 19737.784 24646.8935 6291.0124 66903.9559 12937.3355 8128.2235 25086.3858 241320474 nosz Nitrogen Denitrification NA Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 8325.9242 6489.2255 7578.1295 6971.9686 4762.6369 9706.8622 4178.6003 14416.3068 30180.7813 6270.9399 251715.7814 9642.7475 32722.5232 5480.9186 5111.8775 5111.8775 8579.046 16569.6981 12146.2775 18249.6024 12646.6362 18466.6014 6071.7288 6507.9615 19321.8719 6536.1984 24612.2377 14303.7785 13759.4663 4234.3187 8761.0968 12439.7227 6887.2705 13648.8771 114321609 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 16247.4641 14458.085 5465.1383 5542.9876 5601.6561 4519.4689 7257.9917 17406.8886 8881.5221 233608.763 9990.3775 10865.2552 10952.8119 7567.9195 7567.9195 6041.2365 30309.3247 13720.3902 21986.6008 14953.111 18787.4745 4417.7895 77894.548 12862.9049 5261.8025 13043.2219 5061.1137 24636.599 6071.6956 5632.0161 14989.5007 5802.7456 14447.2039 83950170 nbac Organic Remediation Aromatics Nitoaromatics Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 4686.1422 4422.655 2364.2068 2544.3464 82149.6315 3663.5614 4131.4329 7859.339 3587.6823 3587.6823 6707.9762 11832.7445 5150.1166 4916.483 2756.0761 3442.5609 8137.4643 12308.34 4025.3587 5974.9714 1959.7889 4130.5114 600093 napa Nitrogen Dissimilatory N reduction NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 173141.8955 23807.0892 70903.4736 483696.6502 78749.9978 12686.1129 76313.2456 76224.1496 42426.2425 90637.7266 115345.8166 95814.1414 1151833.0521 126748.4936 106814.6924 158704.5919 100000.7563 100000.7563 73777.0436 150942.4513 70823.8521 96458.0361 164317.8035 244416.2815 75158.0452 71672.3046 105025.9036 89081.285 165878.6801 70693.4081 118702.2928 38396.7048 118493.4004 128897.3155 69251.9293 99892.1885 71144796 linb Organic Remediation Pesticides related compound NA Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 9076.7315 200569.3525 12152.7126 69864.3209 4616.2844 25706.2437 6009.4132 6921.5502 4893.2942 136839.0995 23335.9205 7709.702 14308.9174 4864.076 4864.076 2569.9314 9710.1051 8421.1508 6130.1875 7472.3911 9422.6932 2571.4841 5337.4099 59806.783 3416.7359 19634.0342 11122.8744 7556.4317 3008.5534 5590.9012 181019.0892 4571.8319 6535.5505 378570327 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 6335.3336 4221.5758 4625.5819 1935.9194 22809.6451 5562.5933 6252.7444 14334.3296 5274.83 6303.8768 6303.8768 4561.6331 7473.7248 7531.9101 5607.2873 86274.2941 7489.2997 4158.5232 16447.1861 3120.8387 21952.6267 10211.73 6173.1862 2201.6651 3994.499 5695.2322 5147.0288 332377136 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5065.6822 3840.5614 3431.3116 11570.1421 119486153 amyA Carbon Cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 5275.5229 3414.5197 4142.176 3933.2116 6582.2674 4005.3932 7600.8391 4676.2639 9570.1959 5845.7547 4452.1652 3031.1258 2804.5244 14278.5644 5826.2761 8828.409 2046.5956 4078.7951 5984.9457 4815.8304 5255.6633 84702674 linb Organic Remediation Pesticides related compound NA Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 5914.1772 27537.7894 11911.9688 2261.6339 2166.8274 5169.8897 4811.4082 4032.5763 100144.2181 5257.9145 9046.2295 6116.1412 3113.2564 3113.2564 4406.655 9633.7346 4392.1455 5154.6257 6813.5722 7918.9798 4363.15 3627.6862 6943.3068 6810.7567 12582.8215 7230.6717 3580.0385 4479.5052 5330.8826 4353.9743 4642.1992 78102243 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5919.5621 3178.0929 3918.9809 15311.8424 2622.5142 8514.5084 5676.5088 27287.385 28874.5547 17884.9247 4755.6971 6343.1555 2224.5961 3967.9675 5040.3001 3477.825 114544728 phdk Organic Remediation Polycyclic aromatics NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 10085.3821 10303.9406 3406.9102 4448.8319 5365.479 3009.4115 1956.2325 4756.5744 337270301 pcag Organic Remediation Aromatics Other aromatics Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 244627.8615 15420.5282 50108.3647 54505.7613 16839.1587 8297.222 270987.4961 96985.9538 49028.4376 34755.0416 81198.4171 809986.6812 99515.5798 33223.8215 269420.2404 31227.981 31227.981 21766.0748 88515.8559 28991.5195 54617.6006 89120.2852 22664.4739 28565.0577 88293.8689 57802.7093 25151.2805 75672.8425 79748.4112 52428.7957 45385.5287 43589.0732 37175.663 125253.7582 116051.9049 209401908 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4273.6223 13412.4484 297560355 pme Carbon Cycling Carbon degradation Pectin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 154678.1924 13095.5854 77932.629 100030.3254 114212.5355 35117.2889 80221.5875 167193.8668 104300.8356 59221.8933 115813.6512 107540.1406 1835884.3924 297506.3434 99667.1986 155457.3549 120532.6702 120532.6702 128736.23 162227.1838 53961.4123 110698.6261 256886.7536 473873.0183 192618.0532 113854.4986 102903.27 76042.3887 268123.8148 197863.4626 254976.5102 130329.2945 103987.4869 99703.472 111627.2683 179690.9562 299133604 PRI Carbon Cycling Carbon fixation Calvin cycle Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 31222.7949 20980.5042 11890.8253 28069.1739 8358.511 23919.6475 9419.4931 12635.214 21893.5022 27327.0865 727953.7993 92547.0446 61272.9212 32174.5439 90354.8008 90354.8008 27298.4386 46851.5484 76413.4623 1307879.2954 43311.1645 17873.1507 42099.9011 29596.2142 61402.7069 50695.257 47131.6299 15739.2388 28722.7289 31489.9495 45716.7988 43924.7671 49129.4858 36884.4587 261407082 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3686.512 4146.4428 154018.9688 2248.6564 7822.0161 5100.8039 4239.4675 159027942 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 5282.3328 4580.5307 2444.5938 2444.5938 5536.6742 4231.0855 7555.9169 2708.7701 99030632 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 23621.3528 11093.5198 14998.2568 19527.2996 15725.2355 7101.1433 13040.157 37387.2738 15158.0715 17505.5942 30077.9262 10685.235 357032.2633 22969.3329 16047.7014 14469.9706 8910.1895 8910.1895 12911.4553 26389.1803 19750.9161 20317.3747 26049.9591 28829.648 9916.1872 8739.1673 25439.7306 9354.7109 39518.9209 23186.3791 26394.7175 13794.6024 16410.0234 15101.6431 13294.4914 28961.0892 209401910 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14241.2896 19470.2618 15241.3826 37815.3336 33427.2851 12751.863 16686.9613 6887.0663 12226.8467 21142.3671 18102.1277 281427.5011 35530.4343 35073.4776 81341.7356 23908.9525 23908.9525 7485.2748 27203.643 22505.2175 9824.1506 16535.9886 12814.4622 17620.8807 8953.592 34845.3688 62361.6134 64002.3846 25583.8098 40827.1143 9647.9814 65391.5575 16764.2432 14294.4194 9734.7653 70673031 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7169.6639 2681.4205 2539.5739 2799.8804 5818.5789 10050.8455 101359.0214 3607.1975 8862.0197 2414.2372 2414.2372 3731.4601 31875.9113 4861.4936 4009.9035 3977.6355 11789.6302 2844.1986 6000.2071 5293.265 4154.227 3843.5074 5865.0847 2592.6151 3418.4151 3110.3499 3196.1331 9312.2734 300780907 gdh Nitrogen Ammonification NA Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 16336.4895 7981.5662 9292.8586 9030.5694 6595.3187 7607.8644 6108.9243 10940.0183 12080.1151 177083.3833 23008.4663 8091.8518 5964.4898 10290.405 10290.405 7943.3214 16455.304 17511.2933 11214.9165 24103.9338 17030.8484 7490.0375 5922.0634 14672.445 12144.7378 26645.9509 7415.2517 14521.3583 7723.411 9303.8578 8306.8568 14426.7857 14366.1666 169793432 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4667.9761 41964.5422 8901.2125 10145.6087 30775.2785 5113.0511 2920.4491 9018.8532 167644275 amyA Carbon Cycling Carbon degradation Starch Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9600.8773 4854.8732 5932.6966 40139.5852 7776.2581 4009.1725 4399.2721 5908.2992 14006.8571 86474.2275 20440.9134 7327.1587 4170.7259 10861.2454 10861.2454 5632.9872 12466.2329 11262.0381 7583.0569 17957.9238 6213.8355 43594.4102 4896.1582 11716.2734 2960.0607 14322.6484 7603.9156 11834.9654 3884.0745 5815.9319 6607.0069 6498.2034 9037.2058 37201345 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7981.7124 66319.0755 4321.4683 31504.1888 18033.3963 2391.1759 149818.0217 9697.9259 2530.2544 17099.5799 73762754 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16250.7751 9091.6338 10462.5798 8791.1438 16867.9091 18876.7205 8033.2548 13869.2775 15083.62 6986.3314 283111.9165 21988.3412 17925.5319 16611.5218 6668.8945 6668.8945 10309.1062 21902.1228 17160.512 19542.8748 18363.8594 21059.3796 6839.6085 7072.1073 19062.8581 8389.6526 30720.5204 12938.8324 46064.236 6519.1712 8876.3733 11892.9125 7884.0381 19412.4191 269099332 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 151292.4668 27709.9679 97276.1574 76681.2241 266218.1285 42924.8348 47670.378 157230.4324 114082.9988 103513.3731 93478.3442 75542.9802 3661876.3601 116201.6208 133284.2692 205798.9329 178542.7072 178542.7072 66686.1237 120117.6846 78108.3446 95669.9851 172596.429 128602.4025 121428.7489 161130.4685 123738.5054 63324.4017 214330.9159 97421.8167 129658.3235 74545.8785 84539.4452 100230.5703 69499.2519 165587.6305 158251630 aps_apra Sulfur adenylylsulfate reductase NA uncultured archaeon superkingdom:Archaea; 64714.4135 326413812 tktA Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 6246.3737 13241.6543 7725.0568 7725.2584 3249.164 4179.1699 8944.8774 3712.8193 103026.2554 4677.157 5445.6767 3383.9412 3383.9412 3286.0945 11723.0316 3181.7454 4366.0735 3050.6904 3927.9283 11555.7376 11641.85 9373.8986 10153.8378 7716.4426 3642.7069 3098.3137 3956.738 359146676 vgb Virulence Antibiotic resistance Degradation Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 103628.4824 188514.0129 32854.4089 75092.4568 24146.1799 21570.4415 49924.5416 54191.1084 33630.2918 57790.2723 51678.5906 2358511.3128 194282.9661 88453.4671 143664.7454 85481.3497 85481.3497 30366.1618 82930.99 31452.3419 136010.9405 78285.4979 40428.3171 43015.8945 42601.3644 62723.8687 38625.1311 311177.7655 47482.3747 60524.1756 24081.3087 68729.656 70319.7068 38686.4784 102334.8903 395762516 cmci Organic Remediation Aromatics Other aromatics Janthinobacterium sp. PAMC 25724 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 7119.3976 5969.7482 6685.3193 116941.878 4106.5405 2512.7719 2512.7719 7657.0833 5096.588 4691.5962 6264.2542 16828.2691 2149.8384 5258.812 5021.2594 2569.7093 163758366 ppx Phosphorus Polyphosphate degradation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 75870.0954 6093.095 2972.0204 21757.138 3459.6432 6491.799 7169.6572 84849.735 12387.8719 34576.9028 8550.8868 8550.8868 2867.4339 14091.6719 12028.7595 12364.0523 167405.6496 3845.3807 2259.928 4133.9111 19325.0648 9127.544 20275.5049 8814.7508 9628.5612 6106.7611 7748.466 11475.3174 5472.1118 6260.0358 308213057 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 50774.6623 30735.7605 26998.1965 44837.0379 37267.0011 11256.2837 28564.0818 28772.7803 21943.0398 38564.3376 38129.3966 25428.0146 746115.8675 40907.1961 51009.4509 36355.8096 27251.6104 27251.6104 24906.7356 40554.9486 27121.8975 37948.6043 33173.8668 50244.2421 23779.0555 66345.6724 40777.658 17450.3321 72535.379 37437.2209 44532.0004 19912.2227 24646.2075 24268.9183 15767.3084 47025.3303 339719829 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 54414.1212 55470.1198 27026.44 13044.1262 12203.4512 24383.5752 12817.3436 7999.9992 13125.7704 16691.2716 10753.5423 216931.3077 27517.1073 20649.1094 14085.8727 6631.7179 6631.7179 15318.0509 25737.5824 20172.008 178500.9483 17605.7694 22611.9284 8025.2357 14059.4924 20705.6979 9544.8723 42133.0403 20581.1515 26415.1165 11624.1708 25041.0325 15696.4554 10892.6247 203073.8788 296426626 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 40834.8601 11553.8421 22930.2671 13824.5458 4886.7612 16239.8341 15643.409 11334.1609 13927.1837 16622.0596 7694.5787 466984.2565 18889.2077 17649.3706 16216.6151 11009.5162 11009.5162 12107.0718 28437.8638 16687.4298 17371.941 22008.7403 24481.5655 8447.4276 7217.3894 21706.0695 9246.0629 34096.1352 17716.2108 23484.1771 8411.3346 9823.058 12013.3015 14921.6825 25192.1085 148499137 limeh Carbon Cycling Carbon degradation Terpenes Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 3503.5386 4497.1118 6412.6807 2694.1181 2794.3251 3942.6611 6778.338 7303.6455 4669.0421 2039.7715 3231.9432 5882.6007 4817.8717 9540.6701 5160.968 5954.1581 2865.5226 3098.0369 2728.1831 4390.7759 403199218 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 28371.7275 110453.5579 12850.7175 27831.5004 42217.1328 119373.1876 16312.2635 4491.7574 25021.767 34346.3797 33519.8631 278419.2452 103787.37 43197.1605 24414.5988 30782.6223 30782.6223 10641.714 30721.9244 16645.9066 19207.8145 27299.1694 26309.3743 14584.8931 18455.4341 24782.4496 15196.7691 38691.4091 32568.9837 29329.4234 9502.2889 15997.1327 30365.1212 8756.9046 11803.0752 403728430 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 4975.5492 6339.5701 4546.6262 2470.9705 3830.3943 3597.5012 3709.3897 3733.257 10787.5525 10787.5525 2591.1646 13021.5004 3925.0926 5305.9028 7788.3103 4863.8567 5378.412 7426.2454 3223.7528 9855.836 5484.4858 13342.8739 3582.7637 4094.4277 4828.3052 3581.2478 5662.7605 209401868 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11229.3639 8215.5433 7388.2442 24397.5148 6042.2685 11177.9871 4548.3073 9871.9636 12154.5587 6205.6048 291621.2251 13472.9631 11087.6495 10244.5273 4985.2167 4985.2167 9405.4273 20005.7851 16262.3461 9649.8077 12727.44 12854.6686 6564.7248 7462.3495 21270.3202 5516.1352 23655.9895 14618.4341 19204.7556 10793.3342 9023.4803 8375.7902 8516.1932 16725.881 355373873 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 302 str. F0323 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella rava; 14311.9081 484389.4603 9634.4685 5696.8013 2206.9387 26136.614 15375.9626 5212.5634 5824.9571 14613.8068 215462457 cellobiase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4064.7548 4877.2949 3483.8587 2680.3154 3155.4336 3656.8955 2584.9904 100710.2347 4562.1102 3717.9179 2960.6642 6983.196 6519.4263 4074.0245 6554.9122 4297.0366 2372.9976 2743.8974 7874.5313 3505.0297 10300.6739 3495.4401 6559.2748 4840.2733 209184.72 4491.5792 3396.3079 6149.4388 334302699 xyla Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium superkingdom:Bacteria; 7345.736 14591.4602 4968.0945 10857.6719 13990.8037 12750.5517 6799.8384 4336.7287 6792.2952 6961.4641 4400.1398 6847.6462 7737.9195 7285.1414 7242.5495 2949.3847 2949.3847 6546.0646 10906.1364 7316.2612 11300.3772 18061.3427 10065.0184 4854.937 4504.3271 12227.181 3801.1964 16666.3768 10194.7502 11505.2968 5372.9857 6393.1472 8859.7562 6983.9811 11814.2465 142190 dsra Sulfur sulfite reduction NA Archaeoglobus fulgidus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 4231.956 2967.132 2130.2717 69058.8348 3319.4996 13271.9952 5771.9281 5013.6472 4026.4237 2116.7385 6121.3411 4828.4848 15202.6647 2495.8225 2632.9998 4173.4157 1988.2104 4550.9176 271965632 tfdb Organic Remediation Aromatics Chlorinated aromatics Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 12471.2637 6074.664 10917.9244 70177.8172 14766.1861 4731.1475 9524.4815 3089.3031 20135.8986 9457.827 5713.9676 233620.294 12667.3063 12964.3719 11496.3809 8012.6836 8012.6836 8412.9028 19178.1359 15198.9322 8972.3366 9602.4364 11672.6094 7094.4055 8017.8811 26937.3382 8563.1369 31038.1977 28161.1945 24001.1542 8695.6173 10036.8048 10756.4464 5776.5323 12256.395 37548706 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7806.4996 6543.6241 7670.4942 16842.413 15131.6852 10637.9001 7145.1201 3300.4802 5653.6324 7203.1162 8634.2659 247358.5516 7933.2284 10305.3973 25274.0717 4420.5875 4420.5875 4256.8021 15395.6349 9724.6379 8164.2841 5995.6097 9708.6562 4362.0287 4591.4767 16749.1729 4495.4796 19435.8414 11001.7235 14194.3512 6103.5348 6764.4013 5598.4902 6724.122 15037.1014 290960744 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 32399.2811 202684.4016 121178.3219 116915.576 6404.2133 126411.9944 20254.2413 10498.3509 18443.7252 44621.69 9045.0465 407254.3285 15924.5001 23361.4771 25306.3001 33583.4474 33583.4474 15606.8236 27719.6898 23528.3724 35122.6966 27538.8596 30600.5715 12169.8999 15117.0095 34851.3472 16150.5633 69178.1949 25467.4616 27197.0248 19172.7486 19744.8184 30959.8943 18483.5684 35920.2848 410730953 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Thermus oshimai JL-2 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus oshimai; 11916.857 13397.2644 5274.3161 13840.1008 5787.0933 3983.67 15453.44335 8939.0594 193329.20225 14289.938 55995.6031 16196.48385 11576.6819 7028.23845 31793.5585 19916.7504 6820.8256 15305.0301 4059.0126 17901.24995 145962227 phn Organic Remediation Herbicides related compound NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8885.0689 6895.5882 12561.031 8550.9133 9907.8317 5085.3381 7747.3159 9934.9797 4416.5273 175189.2248 9211.3022 10949.1485 6411.2665 10471.9373 10471.9373 6863.4503 13391.0269 23523.0423 9887.4308 12366.3913 8640.1264 10355.7302 4628.3771 15183.3089 5026.9935 19860.0506 10530.3892 14631.9988 7009.1127 6636.8236 7237.889 7376.6914 13069.5341 56312803 apc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 8465.0068 9744.3409 11266.1243 7317.1888 4366.0489 2185.1103 9348.0774 19796.381 6237.6199 150173.4179 6160.5583 6174.4517 6829.0798 19960.2968 19960.2968 4082.0034 10836.4454 9834.6432 6214 8665.4279 16160.1278 11256.2582 5704.8122 10299.9645 4058.7909 15118.3132 7791.5336 11158.9504 4303.6015 5075.0978 11447.6315 4593.2073 8841.2778 47078064 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. ST41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16029.0079 11082.485 8696.6492 14369.7626 9228.7803 8508.5433 3911.4339 12873.8061 6200.1679 26181.3183 8383.8578 14399.8566 18946.7896 18946.7896 8518.5248 28592.7761 7251.0944 11606.6129 21308.3191 8693.0364 27697.4926 10552.258 10975.9644 18382.8571 47993.2068 13107.2997 19589.2333 9889.3658 15295.6472 12305.6819 45289.0724 10559.8825 238756331 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 22364.8144 66666.6188 67383.3562 15291.6508 4116.7949 6596.779 9668.7458 6945.577 4098.6079 104179.0363 7203.5061 9697.9709 9994.9133 5706.7462 5706.7462 3624.7998 11732.0378 11962.1083 4919.9705 3917.0215 6745.1722 24247.9436 4648.7778 28109.9601 34937.1043 16995.3329 6937.4647 8629.6822 5617.4448 5246.1118 6476.275 183982912 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 17834.819 6072.5434 8536.3939 179940.5891 9132.4461 33381.5432 27449.5402 13665.2766 120340.1549 24643.2499 16592.3774 52633.6152 41879.1817 41879.1817 11273.4159 21146.8285 15452.5467 13321.4386 166513.1682 15651.9089 17384.5668 28356.206 20150.8406 15998.6712 41505.299 29752.5666 30355.4804 10875.5171 23709.807 27519.1149 8026.4166 172335.6835 188592238 bphd Organic Remediation Aromatics Polycyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8396.4957 6848.981 4669.8912 15353.4548 6539.888 4238.578 5166.9554 4374.4709 7609.3895 10480.1978 5982.9271 147395.5211 9966.8686 11922.6861 7680.6102 4186.0874 4186.0874 6184.6795 14733.1799 17302.4543 20640.4835 7675.5071 7296.7455 4895.9756 4910.1016 12208.5088 3964.9327 21655.2079 9926.5942 14613.2474 5213.53 6470.6233 6864.7007 4717.2627 6848.5633 386840391 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 33759.1979 25067.8032 43667.7556 20218.5242 168219.7778 8924.7967 16027.5232 23449.8656 16085.7086 23048.4248 35430.7264 26444.9756 746659.5041 60622.6435 39691.2326 23180.9379 13278.799 13278.799 19021.0091 53930.3697 28635.2785 26739.9748 41073.4143 103929.3268 15705.4761 24430.8865 45417.5653 45107.6898 59717.4344 30271.5651 42856.5986 28963.9428 46935.1052 55712.1619 49190.0229 42685.001 111025787 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 31361.0305 13556.8408 14091.9894 48167.4322 41560.4632 14445.4221 617962.14 79582.8666 13457.9466 31909.8436 40080.6126 25693.7133 618561.605 39127.2222 32489.493 76704.0009 22031.6051 22031.6051 18245.3862 49518.0137 26086.8031 20629.0994 37155.2959 40908.7499 14293.4093 39162.8503 45448.5165 113118.3814 241439.2022 107625.8931 97164.4566 58800.1807 31362.3114 39305.3586 15810.196 177608.1412 386713573 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 84236.2731 48341.8057 30028.1633 66116.5868 17847.2724 6037.1114 19468.8049 22144.695 34162.2283 26828.4428 53237.3892 27200.8602 376460.9895 28783.4285 28018.8959 48482.3091 49210.1551 49210.1551 23566.6947 37863.7218 23838.7461 39934.2673 35545.218 50536.1134 19872.3852 84747.2865 34880.6862 36726.7027 85322.9919 37270.2765 48718.9474 21590.4011 30754.3847 45125.7408 65800.979 78646.0784 290959353 ppk Phosphorus Polyphosphate synthesis NA Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 4630.7939 4305.6289 9485.2408 173318.5027 97560.6667 5833.0917 6610.6081 14662.0121 190590.8103 11779.6772 8344.2065 24682.2794 10166.5117 10166.5117 4441.8387 9351.606 10153.9396 64447.7048 8256.6013 3271.0363 9325.4743 15334.4818 9279.9498 17935.135 11541.7436 13153.3573 4565.1721 28909.1851 6769.9461 13176.2969 4916.6909 357384220 FBPase Carbon Cycling Carbon fixation Calvin cycle Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 29096.0549 1532797.5204 6245.8792 18421.9564 17039.2276 37403.0079 9054.1618 15031.6062 19435.6369 336391.3953 37331.7573 21221.3052 21785.3747 15790.7419 15790.7419 10361.6936 23947.2154 16469.955 25714.6756 21718.9164 18581.4125 30534.4587 12330.3458 19039.8073 18199.0973 34143.7185 49324.4859 22692.376 15884.9814 14282.1987 116682.7788 20289.5592 14627.7772 226346940 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3815.7913 31380.2739 8000.1743 2586.6593 2369.3464 5786.17175 4959.20045 11500.9893 138555.8008 10839.5425 17086.2462 5621.29835 2641.28905 2641.28905 6037.9386 4212.7267 7475.0231 7118.48475 3675.2416 3808.62945 3507.60015 10448.0584 16396.4055 2743.4806 6350.16885 4179.67765 6734.5709 4464.6799 393760050 terc Metal Homeostasis Tellurium Detoxification Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 3818.6197 5732.7305 23117.2796 3141.1591 3005.4442 3419.2418 4431.1304 62824.4974 4872.0582 4339.4617 2176.4986 2176.4986 6140.6652 5958.4986 4864.7843 3478.4201 8041.0559 2833.904 10928.9456 5311.6221 7501.8746 3280.1398 3462.9217 3387.7221 2778.3335 6422.6408 359253597 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 67605.0979 35020.5715 82502.604 61241.6598 54922.4755 23609.2476 33360.2728 40335.1471 21081.2877 29389.6341 36452.5235 27580.5243 1093593.0038 55085.6562 39266.5818 45795.399 29961.3171 29961.3171 27375.0238 43779.7084 29415.8292 50965.0972 54588.7164 36799.6939 16035.0146 30171.5284 47371.9244 64444.2791 63064.9678 36159.53 74014.9529 23758.3358 43963.6073 61932.2669 25264.5994 57444.3359 257336860 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 31971.9188 12804.0582 37458.8552 195993.4523 32803.8273 14834.672 38036.1789 223925.4989 25195.4734 32793.6748 29216.6083 13870.0298 816190.1796 39018.5196 34778.1511 51955.4546 26687.244 26687.244 19941.3366 46685.8854 31721.7796 27800.7445 53421.6538 53513.3173 12413.2302 17430.117 32965.5015 15734.0212 56485.127 28179.4189 30989.069 23225.4357 24808.101 19260.4587 16557.2798 44350.9522 302528185 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 139652.9738 29866.5033 20583.4294 18440.3591 4501.1135 65238.9685 43559.1839 32708.6141 38533.9179 29197.715 36746.9885 731153.3858 27517.6503 98531.6938 94797.0265 62928.4856 62928.4856 81847.7466 63102.7563 33786.5257 34140.1241 171807.1469 61193.2832 27672.3204 23406.5623 38757.5435 25356.8147 82744.9732 32867.5165 81411.2103 17191.2919 33577.4071 29794.5772 43485.5169 126706.4396 78355573 dsra Sulfur sulfite reduction NA Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 8085.4267 9341.5147 6089.2117 11536.9734 6318.976 7784.9091 9649.3098 11581.3856 6334.6261 196224.4576 12341.0438 6737.9997 7527.5091 5146.9727 5146.9727 5157.0036 14850.4759 10390.921 7855.3397 20741.9961 6951.9814 5055.7735 6846.5951 18884.1147 5355.3268 22128.9933 10557.0049 15992.9955 9317.3641 15588.0191 10265.9261 5302.4038 13237.5833 77383793 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 12488.7339 7928.2249 6202.2051 7483.7316 8225.6841 11399.1817 8001.4259 8346.1842 8559.9134 6650.4873 170435.0956 21732.5689 14233.5548 7652.7828 3763.4696 3763.4696 9265.5875 17617.905 10102.3296 7630.0618 8802.7368 6868.4621 9892.6452 5676.4488 18216.3902 11152.108 22138.4599 8557.9424 9301.1583 5906.0851 6066.1988 11261.0793 7037.9576 43074.0421 124262382 chnb Organic Remediation Other Hydrocarbons NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9372.3985 5984.7085 10450.5608 18070.869 5569.1347 13846.7221 7512.6947 11870.0036 14549.2589 10517.6957 14329.9014 296881.5897 43707.9087 13623.0562 237436.3305 5796.9305 5796.9305 6394.8828 19532.6991 11240.5936 12257.854 29492.9001 16006.3889 6081.2712 6307.667 14980.9317 13130.6343 37151.8527 16955.8395 16210.1986 9041.775 7687.6148 11548.7541 8211.5061 14995.3962 145217397 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 20635.0879 13048.1959 14295.6222 9536.1689 13697.6464 5125.8746 19388.8425 7287.5582 11827.0069 36335.4419 246378.5787 10120.4227 9598.3842 20051.2777 19948.2452 19948.2452 7577.8782 22627.5373 10144.0529 6916.7403 15707.9552 9745.5493 7250.0895 7672.9747 15239.4762 2938.8263 16760.3322 5592.7279 13245.4767 3753.0846 7382.3665 11135.6313 4145.2935 11446.7441 393165222 B_lactamase_A Virulence Antibiotic resistance Degradation Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 13577.5839 12578.0968 13284.9539 16133.7383 4880.1783 4151.0093 5766.16 3067.4949 9635.9245 8009.8576 5283.6936 200832.9821 9748.6989 9504.9445 12673.4095 7370.0112 7370.0112 37293.4198 14231.3458 10590.6044 11117.001 10886.0211 10730.2488 3393.9329 5201.8031 17050.3224 3537.8702 20856.2703 10454.0817 13165.697 4026.0391 5762.7782 7696.2921 4990.0977 13291.9699 339833994 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus sp. GGI-221 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 19918.7031 10482.3369 14037.3903 19687.5663 10518.7299 5971.4079 21680.9171 10078.3893 17294.7769 12474.1122 260938.0546 11655.3295 13847.5958 8103.7621 7594.8584 7594.8584 8507.4826 27331.0824 13467.4906 48357.0428 19465.3178 25578.5408 10749.5662 8684.1383 17006.3715 9411.8967 25055.8534 9838.7111 21716.1634 7334.8797 10267.7909 11208.5388 10416.5777 30926.662 218645705 phytase Phosphorus Phytic acid hydrolysis NA Buttiauxella agrestis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 11135.6928 6951.7556 12739.2908 12407.1563 10607.8008 3888.3023 11678.6901 11636.0781 6309.8724 60631.1026 14430.881 34491.7035 8572.9785 8402.9204 8402.9204 8876.6007 19938.7184 14576.4251 42762.3769 29730.0868 13364.8435 11190.619 7389.6979 17204.6195 6962.4334 36453.1253 10352.4954 20159.7547 11020.6975 12713.5658 9707.9853 12039.4998 26544.1365 303294354 nitro Organic Remediation Others NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 4708.3681 5433.103 4750.7047 2136.9151 4858.6935 4013.1286 3072.509 115137.093 7802.179 3296.3126 2044.0262 2044.0262 8405.1174 5777.7519 4465.1307 5570.5984 5361.5088 2268.8969 3068.1824 6760.3766 3540.1037 9658.4533 6760.443 2181.2774 2981.2059 8685.3729 2134.7739 6152.7059 229611208 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5897.5707 17445.5182 9362.3182 4324.444 57776.5564 5002.5755 5521.1206 3647.5499 3647.5499 8176.4012 6469.6874 4903.3122 4415.5982 4827.6192 46644.8432 6876.6116 5969.904 3390.9356 3838.7326 313679679 terc Metal Homeostasis Tellurium Detoxification Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 218754.5563 255507.0475 75756.3369 70894.5557 148433.7259 100145.995 73200.5749 106931.6135 53126.6936 155319.6307 101402.6932 156554.8047 3472134.6645 143611.095 175192.5761 268775.9238 154149.1506 154149.1506 146038.2251 189208.8466 106918.6274 229460.157 389522.1851 72914.1303 92154.7214 101224.9925 129937.8043 94791.4498 58451.7906 152846.569 280666.1669 121262.8027 99577.0507 149477.114 232889.8929 175372.6183 134100915 catechol Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 11377.7003 5485.3142 4146.5975 6699.0294 8484.9026 5911.0631 1802785.247 3468.2329 4546.333 3754.1363 5106.7579 5106.7579 3607.8207 7556.6355 4379.7145 4971.5507 5184.2598 4721.6462 5497.8426 5945.3389 3427.6729 7801.2737 18603.208 7164.0846 2383.2205 9397.2464 8894.6711 7273.2157 10180.3932 123229740 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4753.9072 6907.2524 4816.149 2362.4139 5251.3696 6952.9479 90974.3305 4475.1214 6993.8794 7010.1476 7409.4534 7419.0404 5654.7731 9432.925 6673.95 2864.5276 2717.5765 8958.9996 2341.7519 19199.2019 6689.0658 10111.3918 3918.3005 4282.5434 4412.3988 2823.1623 9835.5404 359775707 gdh Nitrogen Ammonification NA Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 20726.1231 40354.4389 13571.7609 12705.9735 21950.8657 9226.8413 35060.6377 14747.8084 8576.1942 24246.4135 17556.444 10982.6123 415225.3973 20095.7077 16499.7306 14023.0024 11663.9197 11663.9197 13637.3878 37531.9724 21638.633 22610.3535 19322.3162 20404.5796 15466.9006 12946.1376 28853.9895 11560.9279 37049.9819 15662.7462 24506.1836 10402.4037 66289.8681 17490.5673 8781.1302 28631.2654 144899378 SoxB Sulfur Sulfur Oxidation NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 6597.34245 12331.6318 9184.32405 4685.3536 13994.21135 3378.5777 7213.39135 7086.9381 5813.83995 6208.605 6972.9649 6681.79595 7139.09515 7139.09515 4553.16625 12655.97725 6201.64795 10095.5446 9611.0752 4331.7425 4917.63755 12049.41465 3818.59585 17804.23915 7321.29505 12514.04215 6932.1825 6467.4001 6518.67655 3941.26915 7373.885 316935108 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 38353.672 11360.1399 6095.0965 4722.5864 9828.9118 25140.6139 20232.5051 18099.0668 20329.9437 13283.7371 14379.3091 12835.7456 529218.1605 15572.2451 13083.9511 25154.909 15007.5662 15007.5662 43288.3173 20743.9789 20134.6332 12277.1261 60152.2212 17384.8941 28909.3608 18517.6708 31273.5743 16907.5589 36147.7494 28863.3699 23101.0948 11718.992 18060.3003 43291.0535 13456.935 165963.5091 46401100 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 6903.7799 7763.1119 13172.7825 11914.2095 8802.0702 5750.2788 14406.3308 20599.4123 5895.27 365587.7363 22263.8322 11146.8915 16364.0864 9004.255 9004.255 19744.3824 55684.5092 34972.7566 9983.6788 22182.2051 40619.0835 8727.0179 17977.646 49766.6588 13492.2171 59213.075 20980.642 35677.2158 10533.689 23168.9782 23619.24 6134.5902 13212.3251 217506389 fccab Sulfur Sulfide Oxidation NA Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 15501.1891 451259.3192 7817.9494 4030.828 22826.9085 4763.455 8025.6488 8254.2462 6594.6304 107522.8046 8852.8517 6499.9136 4852.073 7411.405 7411.405 15736.4824 20331.3364 6199.0308 9045.4789 6308.2637 13372.463 5618.4472 9875.7196 9358.2444 4874.9588 16674.2065 12828.7558 9732.8934 2521.79 5547.2484 8056.2564 3826.1518 9120.6154 259427865 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7930.4885 6061.3517 5835.0641 7255.704 5463.0243 5442.0221 8461.118 8657.5928 6208.909 230365.7202 16980.4457 7536.1223 6572.5007 4612.7086 4612.7086 6701.9214 16632.9823 10536.1438 9306.5818 15735.3437 8602.5512 6646.6805 4633.8753 10021.8348 6116.3201 24300.3998 12011.4138 13312.1583 4896.0928 6707.9602 7016.6545 5236.4478 12032.1585 92112442 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 127248.8217 23658.4136 57255.252 37947.2278 48436.2451 13592.0098 35577.2058 37485.8288 192983.4083 27615.3333 43186.1109 65442.2455 379281.9266 162878.6573 39806.4559 46568.0408 95274.9479 95274.9479 56126.8314 55498.8055 76715.7717 85253.507 182668.5167 122824.6994 58666.4317 38698.2707 35968.1512 57522.7464 107714.4007 34952.3008 85481.5892 14813.7259 65379.8628 82504.2045 23028.4236 98251.7408 29604552 pcpb Organic Remediation Herbicides related compound NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 23120.8171 9672.0074 57528.7172 238059.8522 25273.9313 27374.3239 11651.7577 12412.3109 12700.0537 13812.0718 10718.3366 16099.7655 19934.7633 13581.7794 11410.5965 11410.5965 21069.3947 53537.899 16513.5419 21544.9976 19551.9468 19302.2159 8196.4775 10637.4123 20690.9159 23827.9102 89676.2927 16102.6647 26001.1633 13802.0588 20771.5531 22857.7067 12291.7073 25572.4558 28901493 pula Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 31489.9172 544800.5429 8712.6329 9696.9843 20366.2172 13309.7574 18785.0871 22549.2022 24167.0802 28945.4472 556301.1303 22081.9289 17231.3052 21815.8861 28868.1885 28868.1885 30485.5097 72877.1665 21215.3 55997.1911 44017.0755 27610.233 14787.7455 20238.0228 31206.9125 18981.9494 63955.6548 36219.7174 55393.6534 17180.1945 27276.3025 284399.941 16600.3185 30938.019 376396851 xylanase Carbon Cycling Carbon degradation Hemicellulose Klebsiella oxytoca 10-5250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 349198.9789 33238.5062 30490.9505 218636.0192 220023.0247 25665.3215 43008.3197 161286.139 39387.0223 43529.4 93668.0524 39877.9113 1281398.7793 72305.9003 64067.1065 57642.9041 49329.6885 49329.6885 46232.6218 120782.6519 50306.971 45249.2831 84602.3775 72169.5929 36565.1102 105001.0507 85602.6305 54479.2732 147368.7863 110358.1196 93127.0891 26762.6114 48446.106 52509.6414 45068.2313 108797.4977 349600205 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii TU-B-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7120.9689 6278.6925 2628.046 19414.6431 2756.4415 4763.1794 5002.2092 3955.9748 91217.4683 4661.9242 17988.1743 3833.3659 9582.892 5981.4535 86538.5186 8374.6531 4645.8256 4011.4219 3162.113 9688.3504 3459.786 15634.263 3937.2161 7133.6323 3007.8433 5599.5005 7710.5141 4219.1943 5753.6679 88860516 endochitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8918.4378 6812.7019 4452.7165 8534.3294 26444.6864 2771.9999 7020.8964 5294.6017 199854.2363 2931.7747 7683.9423 8681.6289 5089.718 13197.8418 7517.3065 2980.0349 2825.0044 7755.2648 34694.9009 10007.7025 18597.9744 7632.7635 2624.3043 4580.3043 5600.8051 4291.6209 8236.2807 55978124 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14611.1346 6917.0383 10557.69705 15241.3775 8177.6065 11488.49955 9003.51145 3762.29475 19139.45155 7778.3898 16079.0901 17434.3504 20827.7559 20827.7559 9182.22855 9924.3675 18072.05095 5891.61865 15119.46025 14336.6773 14653.48375 10428.54925 9121.4437 27345.1087 192764372 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4140.8179 7157.1335 9140.5103 5443.7294 2243.2421 3787.1824 3733.5718 61383.6143 4799.4484 3803.8738 2202.3658 2202.3658 3201.1884 5630.6 4994.9483 3990.8111 4534.0926 4693.2482 2996.712 5065.3281 6641.3601 9530.4721 5349.2069 7472.7204 2940.6687 4429.909 4610.3016 2243.1379 4389.8848 300712555 atza Organic Remediation Herbicides related compound NA Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 9935.3608 4676.7078 25793.3362 6483.3995 4255.3534 4911.6722 2390.0131 7292.7686 6389.5695 7857.1775 386556.6256 12905.7262 8982.6223 14279.6089 56121.7008 56121.7008 6811.9004 14168.1868 8536.1905 5598.8531 9939.9507 10464.2774 4080.2133 3792.9248 9611.5647 14080.3339 11657.1686 7039.3501 350191.823 4455.3256 5790.5435 5041.8086 7019.0008 9498.4252 387842568 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 4500.157 6133.9836 2734.1047 3555.2525 5312.4881 6361.2932 82619.5791 8721.5214 5030.0167 7561.6898 7561.6898 7753.9164 4064.441 3943.7575 6227.872 4984.9972 2358.3471 2697.0488 9031.0938 12343.5436 5055.482 2488.2531 2525.7641 4333.9321 354613690 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 60822.8978 20637.0392 14033.1436 53079.432 5408.9457 19582.6979 24925.2351 10367.8537 253391.1794 73178.3589 28810.2141 781758.1276 32306.8374 24174.6497 58167.0642 28392.535 28392.535 34887.9391 65344.722 28922.2395 32888.5245 160181.3737 41078.6401 25627.985 17769.8602 41798.6409 21585.0379 158227.7084 49567.8192 44862.9461 14914.7819 26590.2682 32161.3746 22646.0296 37405.978 383809254 nirb Nitrogen Assimilatory N reduction NA Rothia aeria F0474 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia aeria; 9083.5699 2615.0495 3045.3058 2680.8751 60805.6062 4236.3136 3076.2127 3076.2127 102847.843 11230.2186 6127.4517 4273.9926 6096.9584 7184.7181 8162.9063 3289.3144 5801.7688 3117.6898 10694.7642 3862.4325 5971.0725 4509.7213 4974.3774 4344.7876 356879587 nirb Nitrogen Assimilatory N reduction NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 41074.4551 16091.0951 34703.2278 9606.4111 13912.5844 6546.144 15263.4975 24903.6827 23001.0622 24065.8437 30242.9366 12731.3119 468461.345 23351.2994 18693.9314 13251.4567 21614.1352 21614.1352 15138.1252 27258.4787 22252.3785 14439.93 18828.4121 28851.271 11458.3979 23558.0622 30256.9892 11293.1907 33683.6227 22362.5862 38294.6476 15589.5899 12703.696 15205.9353 11029.2905 23008.238 345012307 badh Organic Remediation Aromatics Other aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 19865.9878 10668.6408 27736.7152 20856.3077 23743.6206 8014.2536 136428.9074 18566.9537 16793.1553 18172.2556 11605.6142 304276.1038 12799.5693 14777.8836 11434.0933 35235.7823 35235.7823 20632.2431 32620.4406 10705.185 10941.1855 10011.1182 11223.8652 7672.7638 34666.8313 24000.2065 65470.7385 509151.1497 19110.6762 20474.35 73993.6924 12294.2494 17522.3534 6675.385 13291.3588 334887195 cda Carbon Cycling Carbon degradation Starch Haloplasma contractile SSD-17B superkingdom:Bacteria;order:Haloplasmatales;family:Haloplasmataceae;genus:Haloplasma;species:Haloplasma contractile; 35098.0658 11956.3599 24703.816 10900.531 20004.4315 13657.0023 10761.7116 18187.7424 20985.0428 8456.4211 432117.2647 27474.5485 19108.7014 19075.6834 11120.965 11120.965 15448.5879 28302.6059 20894.6369 19278.2358 25424.5065 40619.3586 14255.0826 11414.928 24852.0232 10285.6013 47138.5251 25277.9786 28989.5043 10355.6057 13937.1967 16969.4962 9672.4334 39289.3034 149810230 dmdA Sulfur DMSP degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 100453.3761 13528.3076 8025.4578 5122.7706 8274.5817 9672.2521 9597.9518 64410.0319 59523.1757 34119.9744 625559.7941 14711.9026 19198.8891 50103.7177 77187.9688 77187.9688 8452.3462 32592.1656 12314.3027 15953.7155 36936.7964 21096.9716 8755.7439 20534.0064 14077.4308 29298.8961 34999.6396 8345.883 23616.9682 17392.7738 17106.2275 20354.941 14455.3541 9721.6868 227339893 amyA Carbon Cycling Carbon degradation Starch Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 118769.2613 53881.4666 32733.8531 22835.3775 6049.9002 23638.202 557873.8901 14303.5924 44379.4932 37480.2315 54636.2108 3480451.8693 52734.9116 59069.2483 103789.4626 53899.526 53899.526 63947.1317 94394.6359 36573.8931 196537.3143 109690.0722 31860.1438 46279.0418 207499.3346 38350.9294 62799.4606 158638.538 231954.2391 124839.478 26652.8873 60860.6285 91362.5924 62631.1221 139940.3806 89085506 B_lactamase_A Virulence Antibiotic resistance Degradation Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7774.7128 19318.3666 14082.0157 37788.4693 4978.7048 1937.8682 14043.0447 11123.068 7403.1039 27929.3669 294853.7837 6430.2369 14178.67 30657.5549 9936.0782 9936.0782 4855.3725 31213.4027 5888.8696 29382.4212 40627.0696 8387.7554 23753.0075 8705.5533 11547.3802 3776.4068 18123.768 11812.447 20897.4587 3041.9085 10296.6176 10680.9981 3385.9972 25292.6023 167350479 amyA Carbon Cycling Carbon degradation Starch Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 4998.6832 5613.7802 5814.5296 1938.4935 6576.5702 2258.709 5047.3738 119167.9453 4123.3715 79867.698 5689.5905 7086.693 10396.8624 3941.1936 3941.1936 9333.9034 21435.0367 6035.4836 33270.582 9273.5592 8418.2626 3986.4213 5627.75 5251.1672 6702.321 34475.8293 8058.034 3755.5521 7410.0396 26171.8718 9561.5388 6348.5655 73535172 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6531.8201 5641.7233 4396.1401 6751.1116 10896.2165 10708.3897 8027.2027 4089.1253 130548.0776 4394.2314 7600.9989 3393.369 3393.369 13418.4796 4663.0951 6130.2173 109715.6025 9544.2496 9253.8761 4885.606 24039.5039 7255.6567 9476.9602 2136.9861 7491.8292 9977.1465 6464.0224 7096.5248 226315206 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 20863.2633 55972.2737 48784.2741 80988.3365 63758.3396 14138.7545 242035.2945 14032.4657 43863.4231 49898.0234 67452.2152 596659.1419 73216.208 44197.2554 66639.3979 70679.243 70679.243 37161.3692 105947.2729 55754.8112 26521.9721 53604.2772 19429.3832 108648.6039 102237.0143 125897.4499 58779.2243 136216.7995 121350.5978 54294.3395 51397.1907 51910.5112 59029.2573 17565.9259 24758.8537 262273727 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 3617.9926 6418.9608 4404.1258 2407.3359 234584.4672 4075.5261 20269.6815 20269.6815 4200.5584 8330.0754 4666.7995 5676.3876 3970.7016 6127.9832 2319.664 2532.287 4922.3862 6030.6154 9189.7669 4314.1864 6760.7751 3175.5372 2971.7583 3399.8218 5676.7445 341925985 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 6621.4178 26512.2741 5731.0249 11036.6557 6663.9825 6543.4594 10554.9395 4259.6457 123799.9052 16077.7294 3946.0532 3946.0532 4661.9969 6883.4234 7519.1099 5330.428 2988.4784 4325.6934 8868.1941 4085.7669 13900.7476 8917.0613 10543.8262 4541.001 3954.5202 3477.1494 17299.9188 6579.9864 118436078 urec Nitrogen Ammonification NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 4789.0729 28906.2192 6612.4301 16259.8966 25699.8667 5323.978 219739410 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 12944.2506 15526.7291 14626.6633 2198.6513 6677.737 3895.2572 5448.5649 7936.8858 3051.6509 124477.842 5773.2669 12118.7792 10796.1504 6488.6079 6488.6079 4943.6763 6423.6554 5191.9939 6359.7822 14860.231 9678.1231 2628.0783 7493.4431 14184.5113 5836.6947 15282.4353 9691.2446 14654.7236 3294.1106 3686.394 8398.1181 3405.3796 5776.5648 63081872 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 8957.2599 8124.6293 26555.691 3817.956 4754.5703 4593.1052 10280.5926 10049.3654 20597.8727 578635.7512 21352.6697 12550.4478 11638.7796 11431.6587 11431.6587 21859.8308 27486.8083 10716.8345 5278.8489 37324.9217 8569.9619 4017.4132 9047.1923 19646.7396 4105.6351 24995.6405 13198.4792 55751.5448 5650.3833 12308.1078 11776.3598 4791.1353 10141.1338 218117503 GAPDH_Parabasalia Other Phylogenetic NA Eucomonympha sp. HsE15 superkingdom:Eukaryota;order:Trichonymphida;family:Teranymphidae;genus:Eucomonympha; 16361.2615 5485.8866 18896.4564 7963.3035 15253.3104 17911.2624 3553.2001 12944.5657 48332.4955 24022.1525 365772.5249 41711.1979 9987.5235 4888.7541 13266.6223 13266.6223 156433.1678 107079.5601 83770.7395 165200.4942 12363.7606 922598.7375 205845.5271 40491.1945 12790.8803 16868.9986 47030.3287 46641.1193 23648.6068 8908.2141 70466.1982 17471.5754 111643.6349 218068.5176 21673844 soxY Sulfur Sulfur Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 4155.204 7963.7194 43206.7676 4253.9642 5141.7298 4408.9919 4727.9787 697788.101 3180.1945 2294.2022 2294.2022 7691.0352 3754.861 5036.64 6363.2729 2723.9027 2857.8243 4546.2445 6892.7658 1988.9013 3347.594 2915.2683 93354671 arylest Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 169963.2019 86265.5914 87867.4527 530459.1621 128507.0615 29788.7553 200764.0228 170003.1329 131857.2539 116241.1868 167699.0769 97669.0399 3823405.3564 138287.2137 270871.1499 245814.7157 189065.5539 189065.5539 73001.1746 155066.2497 105958.6498 378489.9203 124481.7276 134759.0759 126513.4607 88778.5162 113775.3453 124531.0862 295554.3419 309233.7363 153146.1732 107012.5033 108958.6824 113739.3047 204316.6975 195599.8505 77378513 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9481.687 8021.0763 9872.3051 57425.9604 41861.2119 9687.6263 10545.1652 15064.1602 11901.9852 19946.4707 226847.0511 26643.0467 615103.7948 31683.0059 52410.2059 52410.2059 7250.4273 22387.775 5486.8424 11133.7067 19841.4745 10986.2049 20053.3586 28794.2681 21463.0434 43580.2608 57226.1104 90807.0572 28062.092 11244.886 16050.4724 11362.9368 12604.794 15266.8092 261291092 aoxb Metal Homeostasis Arsenic Detoxification Ralstonia sp. 22 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 17785.2055 16469.9321 31404.4693 29262.9496 7097.9992 30182.4286 16947.1435 16635.8095 22461.8494 22341.3345 12433.5101 650472.8897 33612.8071 26724.0546 58415.455 20492.5696 20492.5696 16149.9238 41537.2739 20495.3463 38252.1616 26627.9494 26230.3405 13574.2993 10375.6133 26449.9838 12931.0216 53078.4245 21986.1605 27384.5111 12475.8568 18534.4612 14604.5401 14115.861 27982.2219 148653850 alkb Organic Remediation Other Hydrocarbons NA Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 4674.8055 8304.8734 23594.4847 40990.6569 4512.4322 2456.5218 89349.1003 3731.7502 2322.2708 2322.2708 3507.6493 8583.2824 6037.8519 8566.7651 4912.5386 6098.033 2953.8748 2240.5776 9252.8182 2958.4518 7558.5122 4527.456 6685.7187 3267.7642 3305.4899 2983.6821 1985.8887 4215.1959 13814892 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 5594.4806 11379.6668 4517.4924 6884.3624 4959.7221 2831.0741 7462.473 6115.3682 4314.0621 235195.3749 8790.3518 4887.9749 4207.7384 4120.8083 13397.4774 9602.8886 12244.0454 12710.6935 10118.6687 4040.9236 5990.6617 6622.6257 4241.6344 18492.5698 11492.0601 13127.1578 5950.4626 6442.2633 7177.0875 4223.6922 12464.1481 188592329 bphc Organic Remediation Aromatics Polycyclic aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 93336.5451 101679.7676 327584.6289 24616.833 250746.8593 35913.9056 62172.5015 31624.8164 51618.6297 115024.6354 83651.6209 1640194.396 57414.2329 56049.5526 64288.5988 96768.9534 96768.9534 43170.5912 83194.5162 51106.1858 322594.1947 77286.0569 58301.9697 25092.823 46571.462 164230.7065 42307.6499 160348.4207 57571.8742 52601.8155 21843.7369 65157.9501 53144.3299 36574.8502 31360.876 2897667 nifh Nitrogen Nitrogen fixation NA Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9614.2885 16481.5951 9020.0666 26868.2532 12212.1028 6352.96 14914.5224 32521.92 13072.0308 63042.5956 11264.0097 296664.1427 16979.7724 17905.8532 22084.1966 16744.5917 16744.5917 8819.6464 13464.634 12186.8672 13408.7852 75517.4695 13402.6877 4361.7007 14479.1672 28867.3227 11241.5789 35349.5667 29708.135 32675.9436 12433.0983 10443.9866 13130.018 8102.1639 7543.1283 311886918 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 9349.5522 24252.5079 6071.4359 4792.072 8369.5731 4279.566 229571.0836 7511.2789 6748.7525 5563.569 18373.4896 18373.4896 4067.4879 7565.1107 9091.4636 17515.258 6539.3439 6886.5981 4313.514 4133.17 19744.7276 3353.2108 10541.0486 11280.071 10114.0477 4755.6305 5632.2243 5392.2935 3691.2155 7657.3196 157285341 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 97568.0625 18747.5518 32836.4259 53979.6881 52728.8737 24716.9528 95511.9043 39917.2465 35202.8649 35001.2858 60802.6081 30963.2908 942611.4683 74901.2448 47367.8222 46484.4506 33796.5412 33796.5412 67471.0711 159027.2707 61289.5311 37034.6322 43733.4547 51427.079 17763.8485 35485.4856 45072.1917 20370.7977 87314.1037 51457.2168 126223.6054 53152.2654 28656.8815 56256.6789 54802.4156 56022.9171 95112930 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 43499.7151 5048.7657 6721.2824 17106.9852 3863.9192 6745.9989 15054.8537 18117.8906 413706.1647 7164.4567 8477.3928 11982.6903 7645.6163 7645.6163 6813.5979 29023.9208 31284.2419 9827.6305 26800.4517 16028.0237 6362.238 6109.1969 15766.0474 4846.624 25818.2613 6320.5993 12086.8237 4071.7464 10741.0084 9219.8385 4123.1795 39603.1159 120609826 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 9373.7279 15170.5966 6283.7051 15244.0295 5714.9575 5852.2633 5489.5958 5343.8726 4991.083 86758.9868 7183.2813 11985.3758 6595.9285 3775.066 3775.066 6813.3841 8936.8835 9976.4711 9209.8725 7461.2663 4077.8338 3147.7237 5916.0174 17072.8106 7121.972 18103.579 12265.5248 12674.5511 11504.7118 5987.504 11753.1708 2902.292 7218.48 220926846 vana Carbon Cycling Carbon degradation Vanillin/Lignin Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 161656.3714 2212.3386 2414.1811 5405.0705 7526.9241 17834.5014 12249.8731 77278.1386 6281.0561 14102.725 37963.5284 37963.5284 5901.8418 9211.9751 6257.3829 8002.9798 64203.8257 34684.5658 8241.9272 7376.7377 11310.9181 22185.3752 25114.8543 6750.7379 9870.3559 3471.9786 121340.7186 18035.9909 8266.5562 7224.0136 171853191 ppx Phosphorus Polyphosphate degradation NA Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 145513.0561 41667.2797 20244.0361 59305.4482 48786.2493 7049.9715 93524.3818 20570.7529 18738.9424 51572.5453 18557.5415 350748.3652 16249.2169 95297.1874 53764.9712 35994.7689 35994.7689 27482.8003 42445.6931 20690.9492 31698.1655 175467.5227 9180.092 20255.8836 22657.4996 36765.8447 16629.0326 78876.0441 48154.7608 42486.3308 16414.7882 22556.2615 28606.0532 26033.3429 37886.3312 358010102 tktA Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5519.3229 12556.5476 4798.235 4398.5492 17365.0486 3478.4256 4216.1188 2770.682 4008.5103 28351.0663 3765.3974 6265.324 7031.6025 4795.6457 4834.0734 2026232.6393 3274.5373 2820.1715 7880.6733 3470.9771 10327.2907 3959.7124 7089.713 3626.8362 3406.4081 4449.9656 2300.6444 6289.6296 159882154 ccl Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 37079.955 15461.0185 10022.6507 30738.9273 4965.3156 23050.1878 189604.0269 12986.0744 22262.6924 25159.0938 28815.9241 1605992.2342 29583.3143 27300.5554 24184.2606 27944.5486 27944.5486 21773.8519 55767.6166 32835.4618 63433.1725 34213.3834 314974.4461 21111.4448 15844.8937 39005.2716 26654.1041 72528.4703 43095.4221 29769.7889 26165.5265 20743.1601 31476.305 21007.7885 38754.9696 89069700 atzb Organic Remediation Herbicides related compound NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 25708.8285 11414.1168 69420.5836 70729.4441 432204.0903 13230.8093 10135.5583 20134.309 11968.1438 17706.9844 60813.259 35243.6559 2191736.301 24082.6471 44031.4735 29925.3786 23580.8348 23580.8348 21941.3436 45013.1502 28461.8674 25786.7336 98758.6291 22750.7122 17111.3758 19584.4262 45234.3236 16241.5484 133708.9007 70888.1331 57133.7013 18057.47 42249.5732 20356.7851 15156.6652 58503.2407 146341131 catb Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19603.073 14320.4515 24739.7013 12273.5775 5614.849 31578.4705 48082.0278 11808.749 14042.4388 37178.6957 14888.1521 324874.1931 17059.6051 16921.6597 34512.1297 13616.4686 13616.4686 9150.7047 23289.8481 25799.3455 23118.9589 31946.12 14702.2648 103697.5144 6592.9361 14961.1232 9930.0264 22821.869 18832.2203 25955.3394 275956.8137 13079.4325 79603.5732 10527.6008 19364.4308 315620456 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 1071193.5897 891601.3474 79219.577 165165.3639 56184.5666 150380.3388 189730.3795 178596.6427 212487.3248 157556.6486 164610.0371 4336329.9219 705775.8425 278375.5752 391171.9198 343833.768 343833.768 104362.7658 270876.6019 148112.1586 774595.0552 279170.8964 307797.3956 234398.1637 231647.1308 233607.5062 278754.8382 459382.2295 189363.3983 210854.3239 176389.9056 211517.0311 239190.4095 166434.4499 421700.8017 269854711 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. NyZ402 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 22392.2734 9689.9876 2898.1832 4036.389 6701.2233 4719.2384 6142.4332 2511.7016 8504.3367 5986.3588 3277.4493 2289.6696 5581.5541 37726853 dsrB Sulfur sulfite reduction NA uncultured prokaryote 20867.4721 42597.4092 19902.4158 48860.5363 6421.6122 7436.4059 10930.9654 10836.7334 13391.8283 15504.1253 63956.3277 324915.6912 19019.9107 22396.2749 45129.3293 17519.1357 17519.1357 16997.554 28353.0949 21402.7183 20338.0339 35255.0814 17224.7873 15394.7684 17157.4296 30001.6199 14434.5123 54515.3133 64511.7606 35673.5064 11809.6794 18992.9326 18567.4092 28621.4115 22240.3586 229378649 tktA Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 37844.9123 24511.6651 11829.8156 10356.8678 13974.1883 14426.7888 10971.8206 20840.7166 17284.3286 30482.8346 19240.2363 8566.0906 319422.3606 23171.387 16910.6372 12225.535 16662.5725 16662.5725 11836.5288 51851.7323 28978.643 17662.2351 34347.9542 23471.2686 12216.2904 15159.8617 28224.798 57647.7597 71133.2335 55105.9727 21027.2273 13974.0867 13908.5502 18630.121 22040.9572 46064.9154 335865451 linb Organic Remediation Pesticides related compound NA Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 4527.8239 4474.2316 10730.3882 2027.5959 4532.778 5069.1032 94266.5114 9002.7199 4016.0548 3369.9263 3369.9263 4114.981 9072.5746 6956.1859 8952.8031 8063.9475 4429.1372 3009.0291 3437.838 10203.9775 5936.6979 17259.4403 8617.1716 8451.4275 4130.9705 5719.8212 5299.7126 5335.3434 9974.29 337745243 alginase Carbon Cycling Carbon degradation Alginate Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4210.5849 17139.1724 4312.0359 3850.4195 4981.781 4981.781 5639.516 3185.7166 4841.7076 3477.9578 2239.1531 7745.9299 1853.4529 3803.7133 3388.222 4679.1075 332011809 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4883.7982 3676.309 16742.8465 71231.1197 7087.7236 3574.8271 4577.2103 4577.2103 3773.2059 8677.2342 4505.8444 8947.4696 21388.0022 5119.7932 3876.645 6289.8964 5395.7698 21351.918 6846.2187 6189.0569 3067.0959 3596.8757 3392.7923 6315.5307 5972.1251 297202069 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 30995.5012 113028.2637 54626.4649 13638.8317 20826.4352 22669.509 119004.3066 14331.0513 36629.9354 34666.8947 92595.8977 904388.8608 29682.8362 31002.0583 41579.3057 32227.8131 32227.8131 21887.6505 33243.5338 21667.3576 54476.7874 30441.0177 15363.2937 83933.2256 46457.62 48598.9526 86916.578 45180.5855 51721.4655 38536.159 12510.0291 35868.5835 43166.8997 155997.6639 39818.2737 122090342 amyA Carbon Cycling Carbon degradation Starch Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 4386.7826 5243.0983 4416.1956 2565.906 2365.7524 4268.0131 7069.6193 28191.2664 3480.6755 6285.6801 5691.1272 2947.1739 2947.1739 4611.9411 15832.3598 6888.2947 5892.3686 10905.6551 8787.4219 3433.1038 3851.2158 10986.3308 3883.4604 16829.9173 9393.8861 14307.8059 4281.832 6211.9376 6268.7598 3611.6581 7830.2995 261359769 oxdb Organic Remediation Aromatics Nitoaromatics Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 24742.2461 7218.9599 61446.8477 3138.5503 6341.1495 2260.801 7121.8542 23125.8745 7504.3642 4305.1242 6148.7628 11434.996 2869.2386 2869.2386 3771.9976 4280.7368 3660.6473 6735.3004 6038.0362 3334.4985 25371.5695 10459.7924 31966.3921 3948.5784 4500.5852 8421.0096 2403.9203 373488331 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 5395.3272 6135.3709 8773.5906 8299.7455 4446.1093 2836.8299 6683.6473 7865.4116 4795.1425 140561.8525 8603.6718 8253.0902 7969.8547 3547.9435 3547.9435 5697.5849 11535.7819 7151.1646 6222.6701 6853.0283 9573.5436 5570.6138 4131.2184 9965.617 4494.5506 4986.8258 4431.2767 11131.3793 4389.6346 6372.9431 4000.8634 3322.7261 8125.6528 164508698 nosz Nitrogen Denitrification NA uncultured organism 7800.8097 5066.7727 10032.9152 5417.6426 3201.7992 4051.171 6977.253 2949.3849 82998.9787 10098.376 3417.9296 3417.9296 4061.3651 9110.0344 7011.3748 7809.8492 9953.2116 4183.6802 2696.3656 10202.138 2698.8625 15601.8381 7064.2973 10042.0684 3386.9693 5750.1645 4987.8074 3106.824 10962.8318 41397309 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 5441.1049 3413.3685 9320.4628 3927.3394 2615.3037 6607.3977 5765.9449 2386.2066 3042.9165 390568536 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 32672.603 12958.1281 16009.1523 16287.5708 8750.7334 104895.1622 13024.0866 7815.9562 16803.2077 17345.4115 11895.4109 471338.3437 30399.9903 24672.8257 36336.8742 10749.3226 10749.3226 10578.8428 23275.9718 20517.5649 78968.1662 15943.0142 25569.8788 44784.568 10625.7599 24524.8222 13260.6111 33187.692 17007.6793 24071.1966 12383.8048 31497.0332 17124.4122 12902.5124 19716.2237 190014392 terc Metal Homeostasis Tellurium Detoxification Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 6139.8943 24830.5083 5382.7236 12757.9697 5613.5435 11348.2956 404366.4713 6891.7624 6660.7657 193980.4027 11691.7928 7110.184 8405.0726 4560.4104 4560.4104 4133.7508 12018.3568 108813.8895 5996.6301 8168.8768 51903.4107 5079.5601 5090.5946 7357.495 12491.7748 17395.37 27631.8961 13923.3274 4942.2484 4655.0576 31735.2806 2286.3416 8190.2489 209487022 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4792.8697 2893.6124 16931.3249 2473.2405 4189.9637 2877.4186 8921.5652 2988.9005 5172.3112 2696.3741 2114.1144 17761.1834 4274.7065 1955.2986 3583.6531 2176.8703 322396317 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 35265.3985 18372.1643 28308.2447 39674.1435 39133.3749 8048.3318 29550.6317 32800.0245 15403.1923 21587.8161 32245.8363 17613.3897 751540.1702 38721.3637 32248.6658 25531.7211 31471.9203 31471.9203 23153.2585 43988.2398 38133.7471 33893.9815 43503.4724 49011.9067 18173.9817 13967.4971 37607.3508 14597.2855 53263.9705 22111.7726 37869.7513 17807.853 17097.7252 22365.2804 17544.3013 51922.0084 66474871 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 15948.9615 48306.4735 12138.5177 45951.1053 6792.3689 3312.4878 8646.8378 7424.7572 17190.0751 9825.695 8364.3856 277885.3276 10400.9271 22521.3352 15734.4628 11138.1404 11138.1404 12155.836 11448.9847 11719.3154 14222.989 12380.2702 8806.4798 4808.4424 15724.6832 17728.2473 6744.805 19092.7745 12192.5003 16038.9935 4845.0995 10500.2985 9484.1238 6146.4054 9383.148 139438277 pme Carbon Cycling Carbon degradation Pectin Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 194632.5526 30999.673 48448.9172 391469.4515 50711.0327 22679.0033 61671.2313 95817.6478 106219.4838 239394.8588 122044.207 58778.9864 1176744.5782 89213.7662 121152.6249 87114.6536 87266.3802 87266.3802 53750.4257 164448.6643 75200.114 72585.9463 153608.1878 308485.9144 66543.3031 65404.6534 73375.6374 67472.9079 571753.0616 93537.7665 316236.378 43246.3655 102699.0818 70523.3422 61993.5246 154031.8111 60476330 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11495.8016 9985.0381 14056.041 21357.1502 6489.2018 7270.316 5313.6531 9569.5025 8419.0075 4486.0709 192116.9799 10940.56 7911.0923 7086.8098 9955.5169 9955.5169 6866.8891 14664.9101 12077.9065 6364.7424 12615.8797 13921.8551 4793.4455 5496.4697 18844.4181 7587.5349 24180.3768 14620.7564 15995.4905 6752.2011 7079.113 5688.7782 6169.5457 15025.5256 302695935 axe Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 18423.0508 62385.5027 6289.5801 14560.5098 69140.5125 10432.9388 17456.3201 14629.3162 15385.971 7066.6613 343842.8387 18322.5363 30964.2962 10295.2569 8254.6158 8254.6158 11383.0311 26668.367 28380.315 17260.2418 15623.2336 71623.2366 10592.2081 17416.5808 27448.2141 18620.8761 33911.0229 18878.7756 18243.5746 15971.679 26390.9699 12464.6991 11290.1917 178380.5184 226294165 ara Carbon Cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 4395.4615 7908.1239 3411.7537 2434.8012 6885.1303 6635.5996 116511.0584 6605.1711 5957.4911 4388.0792 9463.9978 7894.0202 7215.6551 13599.8532 5430.4336 2351.7898 2548.5014 9582.1065 2647.7855 12042.9544 6556.6536 8972.9245 2676.311 4017.134 4715.8869 3644.597 6789.8939 398059062 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhizobium sp. CF080 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6314.17 18419.6822 4627.8711 10025.2301 2021.8477 6170.964 3012.8937 3580.6506 10073.4297 56483.5564 4488.8205 7454.9095 12587.1378 20984.8773 20984.8773 5147.0433 9018.1523 6502.0647 12549.1936 5881.041 5618.9068 9281.3907 6298.816 23410.2119 8120.7008 39294.8684 8700.9558 9567.8468 22386.775 10040.8388 20860.1071 3771.3028 8951.0694 298554904 amyA Carbon Cycling Carbon degradation Starch Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 43557.0656 18366.5983 10005.542 18038.0325 151670.2057 5888.3744 22477.8299 37048.2401 23362.6094 4110719.8204 16214.7609 77910.7009 259745.3685 12819.2457 12819.2457 14641.6872 176885.0189 14767.0881 8736.3618 173027.2535 17545.4188 63237.6999 16081.475 19646.8168 12977.0225 30515.79 29135.8926 30696.3008 10109.8072 17784.9539 20570.0856 8268.3854 20173.0186 237625007 bend Organic Remediation Aromatics Aromatic carboxylic acid Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 32521.8328 48152.4636 15917.853 31109.2113 39571.1308 8544.5223 13499.8452 84335.7055 43490.1386 15276.055 17157.1432 577069.9609 40901.1856 31901.2881 25857.8221 21917.6891 21917.6891 33553.0053 40231.5319 24856.7073 87697.0127 41706.7271 19200.4437 16419.8234 36233.7534 238713.9636 16990.2874 79576.919 46194.308 40952.4071 24456.0105 57439.7749 31404.0739 13290.5137 26368.5114 83316992 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21092.9187 9335.7667 20635.6325 64416.3478 75006.0577 22292.8266 43149.5343 11757.3394 18005.8944 26324.2575 7864.6507 416135.473 31862.2135 31169.1524 21453.6927 18170.0743 18170.0743 16779.2857 34734.7881 40531.2921 18535.4971 19746.8657 25946.3765 9770.4607 14995.7895 68795.1877 13807.1559 67516.2489 48904.9983 54752.5214 18737.0053 19697.986 29339.3123 10746.5902 39605.788 255956699 cutinase Carbon Cycling Carbon degradation Cutin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 34675.6465 344231.4696 48483.5556 44249.295 14769.2555 18312.8956 85018.1429 35622.4333 30878.2586 58206.394 40596.2413 376071.6427 44465.7026 107254.5514 85148.8362 32378.3921 32378.3921 32412.2495 45733.1788 70664.1606 24230.2384 34350.7816 41136.3019 16319.8671 72434.6122 58511.5668 19124.8276 70617.0354 24647.8184 78864.9862 89534.5086 30150.3399 38998.1219 15978.4016 103654.5946 2765118 mer Metal Homeostasis Mercury Detoxification Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 10658.5891 21972.6196 6355.4307 2795.9911 5096.0502 11421.2367 13408.2702 88185.427 141581.8554 7469.789 6341.8739 4154.2472 2108.194 2108.194 2804.7056 9294.4523 5378.0075 10969.7204 8050.6654 5468.2182 5294.9865 6601.9439 6377.7842 10895.6866 3886.4879 8773.213 2495.5073 5346.6676 5278.4831 3433.7671 5230.473 365265175 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 9914.9236 16219.7351 25943.3611 11459.4836 33437.9835 11284.9993 8479.033 5638.1827 3122.2773 8231.3171 5751.8638 5241.5032 168951.9704 7307.5639 8596.4277 24233.0768 13001.4231 13001.4231 5128.3569 14206.9495 8535.4059 8223.3011 8964.9217 10126.9838 4535.2174 4154.0752 17552.0998 3338.955 17980.1418 11648.5615 9749.2868 3789.6406 10041.4111 6124.1135 6784.4855 13648.5057 151279924 nitrilase Organic Remediation Aromatics Other aromatics Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6750.8012 15438.9942 4541.7795 4232.5757 2207.3473 6040.1615 5290.1656 2838.6848 82765.3395 7815.9277 4384.3519 2398.7037 2398.7037 6403.5375 9967.9191 6769.6971 17114.083 5145.3366 7324.3768 4438.2285 3279.3871 6009.3283 2769.3487 3776.9499 5067.2492 8008.6199 2644.7804 4401.2884 3902.5491 4034.6602 7445.9813 340551736 ppk Phosphorus Polyphosphate synthesis NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 9883.6192 9116.5712 2478.2425 4099.4228 2880.8032 7638.4105 8197.6678 4865.0127 322070.2293 8817.319 6912.9607 6999.9535 6999.9535 4540.48 11627.7726 6175.3823 7255.4193 13448.0973 9082.5271 4841.1878 4285.5744 9020.8835 3958.3128 11994.0459 9942.2868 6036.1804 4705.008 7407.0628 7651.6773 7347.7802 282878035 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 9559.7236 2015.7124 3123.8809 2921.5069 6280.3337 2583.7241 6644.1346 5211.0684 3979.5342 3979.5342 3058.0682 11667.19 6884.6844 5553.8889 12291.8931 7569.6797 2450.918 22720.8321 2821.9997 13448.5009 6844.3078 8760.6153 4891.9657 5898.9544 2805.0811 7799.6065 311226183 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 99887.0379 16785.5715 80195.4205 151654.1161 117904.7595 27070.6759 363158.2222 69548.4087 67705.1892 84974.0765 186805.1111 137059.3633 1186230.0065 512640.3324 102815.3987 225594.7355 139136.0386 139136.0386 99768.2255 160135.2296 76928.2287 90776.9291 109379.3268 53945.8315 152335.8375 67107.1302 82115.8036 102630.7116 374689.883 99408.9447 106920.0612 64126.1263 104810.5262 123163.4878 118252.988 176233.6128 302444915 pcpb Organic Remediation Herbicides related compound NA Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8731.4834 10384.8297 7852.5462 180481.4535 21602.9678 8168.2839 14859.2732 5139.8729 25527.9729 8581.4979 145533.9414 9449.148 9767.8417 23911.8431 12495.8883 12495.8883 7076.5374 16144.2824 6001.6 45506.2648 26009.5771 14077.0605 4491.2718 8091.713 43272.9893 7899.0965 20172.065 13255.3989 17499.2448 4739.7168 8134.1898 6801.4857 4937.4343 31790.9121 90420449 pcag Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 71278.2453 82016.7456 17723.9691 16517.9813 22156.6104 27766.6456 38393.1152 28195.9245 31471.9506 50920.1701 67277.1146 3629781.1947 85084.0061 74984.3795 56573.7821 95030.0796 95030.0796 48492.3718 101525.6761 31441.7282 98726.5413 98728.7925 83080.2272 26641.3415 52981.7323 98135.4097 31557.0242 146441.6424 292575.2212 76923.5342 29628.5581 66579.7253 48115.231 34686.2264 160370.5943 383452079 ppk Phosphorus Polyphosphate synthesis NA Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 49550.2762 18797.9919 23700.1991 49420.9777 15026.3949 15205.9382 21325.17 6828.0997 17377.9896 21999.5443 24742.43 589177.3141 22155.0771 181899.106 87693.785 18939.1403 18939.1403 12378.0383 45171.7112 25826.7752 54498.8441 55477.268 14940.0259 19310.3207 17773.1725 38671.9928 28248.3618 95326.1924 43156.2514 36291.1543 20646.0682 27099.7856 21226.5514 18969.4557 26614.0272 363720069 arsc Metal Homeostasis Arsenic Detoxification Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 5670.6094 715407.8165 5835.887 15808.3318 2128.3011 4119.3273 15721.9929 4009.1452 7073.8441 7081.8261 84328.6126 5736.4651 5990.5456 5562.9901 8358.1349 8358.1349 50819.0809 3199.4855 7191.2076 3719.8915 2425.9373 3478.2985 6731.2306 4401.6684 5605.4301 5379.8429 4521.7497 2904.0442 3152.127 18970.519 6973.1108 190895247 badh Organic Remediation Aromatics Other aromatics Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 174855.3147 50838.1589 134334.4972 242971.7093 227581.9139 131439.734 371765.5449 227800.6702 264249.725 154498.0802 117914.8924 174784.2209 3253262.3438 227058.6801 197705.7973 250663.1914 193597.1565 193597.1565 93004.8145 213006.8746 95820.0076 121851.5114 148051.3407 206960.6864 82589.6048 61772.8709 126204.4249 116720.0924 265410.1422 130934.6476 164915.1865 76354.626 87486.1367 134965.1122 89382.5243 194928.9259 145586710 linb Organic Remediation Pesticides related compound NA Rhodopirellula baltica superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula; 4345.2016 12794.8265 4656.4639 3743.6422 4309.731 7393.8586 3146.2808 70985.9154 3848.5086 5841.0671 11788.5765 6471.288 8084.9456 3019.2811 5100.7535 7831.8989 3757.1328 21771.0978 6944.4819 13827.4292 2102.2453 5489.6959 3839.8422 7405.0102 375077643 pme Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 69653.171 15398.2097 21582.2267 18076.9014 36290.6105 57396.5553 35435.1572 15256.5216 20764.2707 37319.6415 11578.4207 426437.5016 595536.3366 24025.59 29095.2923 15763.1745 15763.1745 17685.2745 50476.7962 21193.8638 42124.7076 25411.6228 31838.8869 24012.1329 18851.7831 24875.0058 11231.3801 42611.2505 23254.0262 35994.2965 14454.9752 15829.0043 24505.0751 12252.9506 63727.0999 329940146 badh Organic Remediation Aromatics Other aromatics Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 3848.1869 36175.7449 3645.3057 4396.5712 3129.5875 4981.1451 10752.2506 2117.9154 2605.0774 1946.1141 343463075 tktA Carbon Cycling Carbon fixation Calvin cycle Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 11485.712 87703.6132 22937.0617 7353.5437 29274.1865 4401.1774 2973.3312 3915.8037 2267.2562 3555.2317 4088.8898 2722.8192 354571837 phn Organic Remediation Herbicides related compound NA Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 4663.3543 82985.3362 4719.0317 7579.2173 4675.9642 4739.1656 11914.3909 7711.5365 18164.8395 147259.02 9866.5147 84917.4754 9814.9006 3131.9572 3131.9572 5324.3152 10342.3277 5508.384 5780.3242 6891.103 5485.2987 38361.892 4537.4331 9821.9229 3402.1226 14003.7852 14686.5414 10531.6288 5259.0269 4822.2519 5469.8377 14324.2536 9392.3528 333459357 PRK Carbon Cycling Carbon fixation Calvin cycle Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 8023.8828 4286.5436 5600.2493 2383.8263 9158.2764 5487.8177 16611.416 2960.1982 119757.0762 9003.6813 6964.6384 6276.7202 4255.2332 4255.2332 6059.6354 25598.5321 11842.052 11575.9234 17668.1341 11306.4362 7121.4345 4988.2047 20760.9307 5946.1619 20269.7766 7584.9507 22937.5029 4108.4573 7718.1994 8701.5743 4753.1835 9380.2182 229828576 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 8010.4266 8079.8429 13121.7083 11474.6244 6124.1611 4649.5418 8443.6766 9788.1894 6908.963 289081.5731 10022.7292 8682.1997 9376.3194 5471.87 5471.87 6614.997 12732.8488 11244.7802 11151.726 11840.3223 11630.8334 5172.5385 4776.4192 13753.6101 5653.5699 20441.2829 10098.4662 13274.0055 8781.3194 7890.5279 9484.1334 5466.714 17862.432 221065398 fccab Sulfur Sulfide Oxidation NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8585.4165 11252.3499 62353.9904 3987.6088 16902.935 5665.7929 6608.9085 65927.5305 6100.3811 3989.4269 171005.8376 2419.3319 2419.3319 8258.9801 8617.4476 4886.1822 4726.2484 4037.0089 4370.7524 7914.0548 10969.9779 4073.8841 2521.1604 2782.4433 6137.0489 2857.8657 333795550 cysJ Sulfur Reduction NA Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 15890.537 20274.875 102782.1095 10530.4536 10242.7113 13330.6194 9713.6334 11844.7798 15586.1453 10951.5855 281300.216 13616.0729 20924.9501 9138.1376 8366.7674 8366.7674 12956.9878 24530.3261 16022.4295 22010.2752 19327.2057 30039.298 10945.0037 7444.742 19144.5842 11335.0556 38590.1863 24001.5391 20158.1422 11701.3207 11219.6998 18397.113 9132.5161 21860.7018 332039287 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 16073.3694 8513.6692 25446.3684 12921.9951 6204.0325 10575.3261 11584.0331 6705.2242 12681.2041 15256.771 12440.6866 363122.5586 16165.0906 10804.8655 19526.3374 12446.1135 12446.1135 8059.9329 23330.2715 13808.5889 10973.4899 23839.1827 28180.4102 7996.3181 4816.8716 17986.954 8207.4951 31220.2726 12352.6421 20110.1133 9699.7856 10613.0357 9953.3263 8280.1848 28396.0601 32470978 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 46437.2825 12744.1344 37596.3172 10640.603 8465.4639 72686.1783 10766.9821 29229.2173 21632.761 33969.1624 197668.7877 22338.9301 45471.376 53390.9968 31706.6017 31706.6017 12874.1318 33229.0011 16604.1707 25972.3697 43962.2123 23365.2296 12154.4908 13173.5825 33034.4759 21903.8693 54693.6372 49210.4174 39013.6208 10547.7956 42045.7181 71576.9815 22479.0328 29571.7633 209963586 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7276.3938 9477.9996 13043.6343 10004.5192 5614.6166 12938.9016 5655.5687 6132.122 7127.1405 4048.0545 132045.5463 7031.8644 8638.6183 3335.3469 3335.3469 3991.3877 19136.4555 11219.2827 29667.946 14601.9356 10348.7667 22704.8017 3802.2056 14523.1508 9534.8542 16418.048 8986.8564 9071.3754 4498.5674 7116.023 5121.7152 3678.176 109467.5457 227111749 nrfa Nitrogen Dissimilatory N reduction NA Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 320994.3926 26634.897 10774.7516 15523.2504 33875.6529 23607.5037 112194.2955 187390.0149 92967.9907 94079.363 49372.592 86622.9388 452006.7095 124510.2196 76717.1319 44526.4771 53551.1558 53551.1558 32962.0461 64101.7421 53376.9707 36833.8132 121213.1419 48759.786 23573.6939 35164.1176 71231.0002 153164.8543 250236.2746 238531.4634 114869.5402 62537.4789 42370.1203 49023.174 19308.5179 54927.4913 78358320 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 21536.4249 11221.5899 6237.4221 18233.4158 8075.6628 18427.8941 10889.0291 32363.3092 10687.0694 30399.0288 7031.8334 283580.8251 24594.2893 20928.3577 10974.8393 10221.9273 10221.9273 9637.01 27870.5141 22736.2347 13074.7303 25546.8002 31814.1184 8741.511 10853.1418 52657.967 12901.1385 40934.5892 27021.4274 29774.44 14897.2906 20477.0172 16560.8016 10205.7274 24311.1628 337759635 tmoabe Organic Remediation Aromatics BTEX and related aromatics Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 26085.3695 11098.8027 29737.0066 6115.7062 5264.5173 10102.6495 10344.9426 4924.4923 4313.2524 65568.132 6216.4934 8428.9455 13505.2224 4773.9443 4773.9443 6718.1273 17818.0854 16887.7366 6910.1581 13128.8646 10140.8956 5785.2447 4656.8738 8694.0161 6090.5315 25084.482 9200.6799 12169.0792 5492.0966 8425.3887 7282.2118 3289.6409 8002.0717 268318015 pme Carbon Cycling Carbon degradation Pectin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 100906.7758 16980.6761 21234.328 45076.6904 42374.2081 23156.1292 15431.7894 44169.2389 18616.3048 76793.4818 35531.0803 26950.1327 1270533.4949 23332.8177 67134.729 34581.4766 20413.6513 20413.6513 41525.9791 39617.0665 21628.0842 31021.8982 27605.1054 30864.373 16226.4502 21542.2095 52663.9396 21333.5074 42894.0015 23220.1364 48361.047 18076.0311 19151.1876 46937.3861 42478.4163 37755.0082 110819504 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 17153.9021 6345.6057 8833.9619 4870.5497 3652.0323 11076.3875 7542.2704 10173.3247 10282.6682 1230181.0895 16888.9923 17425.6141 9037.7892 18519.8246 18519.8246 8344.0341 14662.8344 10300.3273 9539.6576 17762.1797 16567.5559 4112.1406 5387.1443 14219.9139 5848.8677 27060.8541 24002.6327 18824.0619 4026.7403 10697.9155 12871.0168 6420.7106 37430.6109 94471313 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11276.1453 19961.5382 9754.8136 4973.9422 2878.4727 6739.4148 8631.6951 7337.3027 239689.9665 9183.4903 14215.7126 15167.4689 7267.375 7267.375 5130.4607 16756.0275 13959.4076 14526.9769 13197.913 3798.8536 5050.9687 11817.9939 11565.8218 4439.017 16742.3083 5899.8451 11789.4358 5150.4565 7041.4551 5135.9445 7030.0997 8692.6213 226279032 cpnb Organic Remediation Other Hydrocarbons NA Paracoccidioides sp. 'lutzii' Pb01 NA 5961.6725 5432.9978 13322.4833 17147.7346 11793.7618 5995.0705 4995.7455 5983.3787 4005.6409 78456.5049 7615.1679 7770.2905 4409.2197 2915.0891 2915.0891 5043.9204 9097.3111 7333.3697 6981.8715 11337.6864 13072.3136 3808.5289 3546.2167 8848.3075 6593.7033 19932.1857 4259.6431 9302.5415 4086.9973 5466.2251 5479.8767 5236.4925 11979.939 347530930 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 10952.2158 50947.8868 9767.3932 11262.6741 17813.138 7511.4978 5528.7681 10428.9241 13024.9951 6944.4478 189803.0882 15501.0971 8898.0619 7137.6574 3865.1452 3865.1452 7877.4037 19804.6582 11182.5395 13699.3751 14647.5076 12411 24148.7037 7504.7132 13969.0388 13754.9753 61041.0537 10606.6492 18994.8623 18315.6344 8323.3646 12465.7946 5886.0856 15915.6726 113932190 arsc Metal Homeostasis Arsenic Detoxification Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 15342.9346 14252.0682 4645.4436 17571.3186 6842.2863 19280.8857 12733.9571 103892.6712 6294.6191 6798.3392 15040.773 14911.4665 14911.4665 5669.2885 12122.2782 9357.7398 8267.352 10229.2851 8290.6796 7820.6933 5878.2525 12098.3253 13261.5936 14214.4934 12064.6801 18836.2859 5496.4462 4982.7081 5084.2144 6606.4972 10037.3239 336116531 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 22265.7846 7005.0165 8807.3481 37901.4978 5731.485 16049.8395 119239.5195 9100.9339 14529.6849 69256.4347 8459.7794 321643.7285 122193.0753 14893.6649 11451.8166 8286.4294 8286.4294 10441.7811 33375.1125 17615.2279 16970.7282 15627.7411 22871.6663 8634.2342 10761.956 21873.1033 15720.1061 34296.1059 22158.0251 24762.3508 8851.6115 14012.4876 12289.5509 7958.9131 31412.9534 45386243 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 48827.2702 56184.5085 8213.142 15329.8674 4409.9782 17650.4788 27210.8375 17733.8481 20434.3626 32025.7777 23462.8774 506959.7529 23823.3508 18541.4418 39914.4257 19801.0805 19801.0805 26358.0774 26388.7915 24848.3381 54001.1455 41718.7621 841153.4758 17073.4086 32057.4038 30948.0451 88427.9024 49482.2733 24027.3596 46072.9528 12048.8364 27643.448 20883.666 21907.9019 31234.0863 400229856 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans CF2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8379.6234 5574.4039 13439.6271 7768.8899 6059.8552 3688.7819 4209.056 4320.0169 7505.9353 64207.8352 5420.8524 4603.802 5535.8752 3074.4714 3074.4714 4270.8596 9800.9987 6798.409 13516.411 14041.3719 5515.4015 3841.1818 3778.1188 12229.4337 4121.5391 16858.0154 7688.3111 8595.0598 4535.1679 4186.9568 9976.426 3421.221 9623.747 319799377 terc Metal Homeostasis Tellurium Detoxification mine drainage metagenome 22079.2076 169277.8505 6606.8172 10015.6561 24437.9195 23910.8752 132058.2656 52207.4187 4898.838 12754.0263 12043.5471 7900.0096 295604.398 14762.9229 32945.6923 14760.8696 16014.6083 16014.6083 15473.5719 20904.6034 88972.2748 18257.8215 25321.812 7162.6376 7878.3447 7081.1685 25899.3997 8339.4126 30442.4336 16609.8473 21796.9861 7957.377 13735.365 14417.6345 20941.256 13126.7251 344925088 terc Metal Homeostasis Tellurium Detoxification Candidatus Odyssella thessalonicensis L13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Odyssella;species:Candidatus Odyssella thessalonicensis; 8386.4945 8117.3265 9073.2743 60682.7646 7397.5023 7374.6282 12995.4585 13840.473 8098.1096 283898.2313 44994.4715 10453.2962 9786.2267 8546.5039 8546.5039 5324.1333 17923.3369 10053.1743 13982.3257 13466.6871 12070.5059 6026.7312 5877.4136 13599.7249 6138.91 73495.4562 12616.5045 20126.7169 5353.2133 9832.9129 8643.0842 7401.1491 25214.7126 73535148 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5550.7104 5154.7911 8074.6096 2187.722 6394.2432 5792.0455 6464.8295 4680.8747 36537.6552 2601.6395 2699.7876 9244.3465 2101.0361 4736.9577 3391.5365 2611.9953 89045879 atzd Organic Remediation Herbicides related compound NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 74270.1487 2372513.219 38822.5262 205790.0624 99674.4125 211237.398 138482.4064 77042.7361 51338.6001 61223.2994 49232.1371 52461.5733 2419051.4362 67784.9806 91931.067 77963.936 44865.228 44865.228 53921.8444 137763.7393 45827.5981 61737.3914 104584.7673 56257.4454 99508.7579 46782.033 83272.2948 99530.2955 326446.9197 45484.3697 97567.4259 127076.1519 69692.543 288831.1206 49574.5945 160032.8039 255320764 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7342.8431 5057.2418 22769.8914 8156.154 18623.7817 5111.7679 18109.5048 8136.2889 5008.2977 132568.2923 7593.9472 10864.3073 5176.4035 5176.4035 6569.112 16605.0107 7672.5147 7756.2659 9444.455 7892.1459 4464.686 4976.9176 14615.2153 16759.6422 14341.5448 6353.7984 30714.8956 6240.4801 5581.769 11235.3289 7114.9164 9741.2106 16126643 hbh Organic Remediation Aromatics BTEX and related aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 328230.1621 15119.1917 125696.1028 31152.6365 51865.3057 26743.5424 32929.2033 42637.954 35792.1035 25549.1822 47037.0601 45657.5346 592691.4775 44403.365 251555.7094 103436.7206 97032.5392 97032.5392 96445.7244 127200.4852 88556.256 93424.7764 73594.8541 100072.9859 38602.0802 83631.0984 47086.9248 86293.3385 297929.4985 90849.9331 81985.3813 70680.3473 110905.4052 61087.4963 43576.1582 166175.6771 93454664 arra Metal Homeostasis Arsenic Detoxification delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6875.5677 3615.6816 37095.1229 3491.5158 26971.9691 6030.5574 3776.8994 99337.3045 5544.1657 5598.2827 2641.6042 2641.6042 2874.5557 9183.2872 6846.5939 4143.2288 5020.1205 5730.4526 3414.8048 2745.0461 8113.7102 2792.2248 10495.8258 4051.4195 8011.0545 3603.7068 3314.064 4314.1226 3394.4957 6780.1143 296426237 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 26374.2783 39683.5499 35792.1897 6581.8336 21784.7096 10940.8656 21163.3548 50459.3043 11512.4464 20812.6378 40983.5849 276170.284 16625.6528 34013.2651 38474.8547 30644.5898 30644.5898 15743.818 22387.238 20568.6343 31216.5087 14150.7463 1244335.5032 11543.4201 19416.3988 15865.9419 21019.2619 82354.0268 41530.8364 25159.6545 11430.1905 12746.5682 13440.9105 9183.9218 17299.6865 323374644 xylj Organic Remediation Aromatics BTEX and related aromatics Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 47427.0425 114436.2052 13937.3059 41403.8879 21972.1352 42565.9574 17501.656 55049.9697 28713.7659 46388.3467 1381938.6733 54688.3384 33651.9947 36777.7784 42742.3627 42742.3627 17721.8153 68684.8396 39318.5143 79337.3282 238310.859 52209.7251 22148.6733 27319.4625 34507.8584 27574.0258 104031.8192 97657.2566 85758.6064 17819.4297 33625.4543 46113.3915 20838.3051 94423.783 345099035 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7482.6913 5542.3234 7017.9777 4592.677 9192.0277 8948.6597 8244.2264 7217.5803 130296.5105 10584.2556 4993.4595 5375.9358 4363.4316 4363.4316 9473.3813 4029.8241 10654.5425 15895.4163 4508.9497 5319.0776 6342.2759 3256.5476 50499.7026 6199.2535 3776.0579 7490.3277 6723.1125 4132.9145 7397.4529 169772161 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 47167.3974 8060.8169 8667.9146 6033.0721 4027.6256 2382.0568 3682.0855 7492.752 6526.608 136883.2589 8721.1879 11496.8841 11017.1461 3310.1907 3310.1907 6314.3566 14094.8348 7537.8827 20022.1959 7729.2402 13211.0489 4983.9787 4158.814 72702.6642 7951.889 13365.4413 11357.8441 11229.2624 6769.1042 7508.2898 7065.075 5338.4934 8119.1713 212171514 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5771.6958 5838.4429 5102.6956 5976.3311 37277.6104 4873.3279 13963.9471 3269.6482 10992.6657 6388.2678 6904.5049 6613.8923 5522.1802 4063.087 8477.5527 2922.5164 13508.3537 7748.2416 11306.6912 7666.5621 4214.1768 4625.1734 2250.7043 6589.8361 159477140 actin_Viridiplantae Other Phylogenetic NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 5421.4819 8117.9667 3827.5452 3640.1654 4625.3757 4907.3808 7067.183 4715.811 4586.7127 30273.6067 7726.6001 21098.5962 5952.1262 7394.1883 2685.363 3399.8434 336178840 mannanase Carbon Cycling Carbon degradation Hemicellulose Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 63364.9252 143513.5248 10226.3351 10765.5113 4695.0748 21245.0872 21785.7922 17732.2168 25187.1076 92879.8891 30458.2521 346049.6542 24578.6199 60054.0118 84433.3989 27943.5254 27943.5254 15270.5198 53857.2571 15512.7908 40702.5517 210006.6857 20777.0506 28840.1413 20676.0215 18582.6978 22084.1928 43843.392 30869.016 29840.9133 20907.49 19242.4926 24631.829 14636.0759 23729.8743 13249571 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3877.0201 6852.9082 11621.2264 11230.2616 5795.4444 10546.8706 7611.8276 3853.3334 73456.3591 3813.0605 10678.6621 10135.3538 3176.5319 3176.5319 3599.4286 8576.5229 6048.737 5510.5774 10883.6468 4821.8836 3439.5807 4990.0824 11812.7103 6837.9044 9754.4766 5487.2548 8131.2132 5400.1846 6885.7267 5431.7718 7384.0651 11190.6126 356479560 lmo Carbon Cycling Carbon degradation Terpenes Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 11418.8549 194972.7928 6780.7716 2718.2499 7147.6149 3176.044 167588842 glucoamylase Carbon Cycling Carbon degradation Starch Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 24947.3908 12864.971 14071.2786 8951.9099 24445.2579 15951.7161 25511.3306 85080.5887 14347.3646 25935.6523 33206.3885 284003.2706 12743.9891 21602.6926 30392.5694 37939.9765 37939.9765 12151.6185 95746.2636 20644.3497 20845.2984 31341.099 13326.3206 12347.6395 47464.2422 23684.8582 23257.8502 60642.1152 35753.8086 34949.2913 19577.9496 25705.6196 30824.4524 14853.0078 84658.0839 126708718 xyla Carbon Cycling Carbon degradation Hemicellulose Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 10288.9725 5059.5573 2134.4605 4525.246 4119.9109 5633.8972 66773.3547 23651.684 3913.4729 4324.3212 9434.1488 5805.7666 6986.6956 6220.4097 7560.3609 3216.8445 3030.9534 8114.433 3707.1688 13126.0245 11353.9847 14587.8575 4530.1537 4961.4967 4936.1951 2912.474 5512.2327 255292567 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8271.3767 7291.1887 5738.6298 15575.8435 3945.3656 5770.751 6045.3002 11648.9513 10190.3155 134643.383 7581.9961 7515.4755 8756.6702 4441.923 4441.923 5654.6436 16630.0044 7891.3977 6659.9012 8917.3638 16570.9834 11372.6437 5573.0872 12575.3801 4209.7499 19856.9479 14416.2076 30082.9315 4467.8784 6477.0574 6621.4462 6165.3843 9099.0159 206687650 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 12746.1926 5941.7006 4304.1553 12409.6739 4040.6445 5631.0865 11917.0605 13279.0926 11354.5375 39362.4586 167695.1428 6213.8111 9908.7271 27903.9172 23532.7673 23532.7673 7206.1612 9848.1312 10330.5875 11165.121 41266.7902 4422.3149 3920.8378 13637.1583 13815.8178 43882.8761 18572.6875 10700.8989 10471.0217 3467.8695 8375.3832 19061.5665 3628.4291 12900.451 296763 amyA Carbon Cycling Carbon degradation Starch Micrococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 4096.5931 10440.1611 30039.6333 4064.116 4066.3945 6782.6781 113198.6064 9248.7063 9386.8835 6084.2376 4804.9889 4804.9889 2606.9669 7745.4685 5069.5613 32064.7148 6108.5302 4308.7949 2441.793 3388.9007 7521.4414 2675.3495 12356.8267 5155.2513 9275.8929 3442.8712 3784.0854 4261.2836 3179.315 7738.9104 261376658 RgaE Carbon Cycling Carbon degradation Pectin Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6693.3878 340360834 nitro Organic Remediation Others NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 14153.2041 47509.2127 29558.8452 19596.6042 17055.4389 24369.9384 4298.3663 6031.8979 8095.5203 3916.2138 1034318.578 9107.4707 10008.8012 8992.175 13500.4138 13500.4138 5803.5441 25543.1586 16036.4251 12689.9553 16635.3793 10173.7795 3625.0617 6599.2722 23562.2542 9636.7737 34980.5504 4219.2568 14790.6656 8878.9565 9975.9138 10625.9081 5273.2263 19116.8532 158426970 arra Metal Homeostasis Arsenic Detoxification Bacillaceae bacterium ML-SRAO superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae; 7546.3757 5016.0353 5429.1281 7545.9427 4766.4261 4060.4162 6927.1802 8957.3937 3742.5925 161729.3086 8989.0645 8503.7234 4441.6705 4441.6705 6462.6066 11043.8426 6628.2344 48263.7685 19601.4166 12413.1673 6112.0701 20907.5975 10175.8512 4446.8085 48331.8033 5069.8226 10155.8439 9016.2985 6721.0798 5588.7924 6353.8707 11627.4597 343095175 cda Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4070.3961 21186.8925 3003.9089 6231.8204 5490.5902 9902.2886 3084.9414 3084.9414 4767.5063 12686.0025 11863.9689 17081.5672 407984.7218 14147.9098 2215.539 2828.6905 5969.1951 2610.6764 9715.0111 6249.1199 2943.0623 5253.519 5441.5994 5845.4494 5669.6015 332592161 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 26276.1077 2131113.7849 79259.6092 12092.3058 18952.0161 12916.5155 227287.0731 41288.8338 46578.8124 19157.983 35754.0675 23580.2869 666031.6274 39100.7895 79569.85 35279.9046 27739.5161 27739.5161 56628.8842 92140.4783 40184.7726 39790.1747 70642.9878 22076.3438 25212.2678 16804.7511 29188.5858 46339.3657 139021.6295 27472.957 28341.4647 37781.9466 30403.0789 23500.4752 22619.2556 27355.9363 118762452 tfth Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 56228.793 20211.0621 7408.6303 10294.361 24253.8521 7536.7524 21857.6854 20445.694 3518.7062 8423.1297 44841.7312 10239.1975 178814.2075 13394.7361 16083.0129 87051.646 11132.7374 11132.7374 8526.4332 20212.6605 10281.3868 10911.0727 14044.7245 5759.1342 4686.5621 15902.7824 10607.9488 49698.4069 17056.4419 27252.1853 17699.0577 12334.825 10510.2166 55718.2736 18909.0667 357028537 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 15080.0255 23312.8243 9066.6033 149238.547 43260.5204 7558.9978 20896.6427 31278.7074 19426.521 12835.2169 12179.8074 1491721.4446 104637.2205 23540.8057 46101.1453 42062.4234 42062.4234 7953.3682 21192.1412 12890.4925 25986.9467 97333.1078 24614.9198 8464.4043 11875.945 25550.1382 18190.7312 66973.8984 13531.2221 25150.8645 231600.8151 14331.2243 22824.0088 8453.3294 26719.1628 39997914 nifh Nitrogen Nitrogen fixation NA Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 6198.8018 12741.0672 3815.1977 3459.5601 5108.6758 6927.337 5388.5625 4381.2173 3646.9634 9545.4989 4826.0087 6149.7148 6811.4266 8197.5053 2208.1348 3746.8645 4288.7439 2661.0035 99561.2538 293606994 ppx Phosphorus Polyphosphate degradation NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 33471.1029 64539.7637 9762.1271 19721.8611 15006.0842 15992.904 88036.1007 14118.0021 17345.2605 17055.2677 13324.7964 11629.7731 382709.6702 15744.138 105574.8714 20745.4156 9397.1471 9397.1471 19551.6318 28106.9962 15292.7279 41556.2478 30860.0167 17850.9966 7902.5507 13602.0446 37653.14 18433.7214 45332.1441 21835.0756 25991.7483 14994.5531 30661.3544 14770.2145 13329.1399 32318.5583 38373203 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13744.8342 41828.1743 18067.8251 18182.4552 4524.3188 9115.5253 6261.2675 4915.1237 9145.4907 16417.7877 11921.2068 217680.7604 11986.0557 8395.386 45133.9416 18736.4379 18736.4379 14161.3503 19442.06 10118.7486 50981.6924 9506.1833 11328.3221 5416.8993 24232.5778 16530.2978 4949.6065 22866.7206 21934.4365 16614.6327 107145.39 7827.8969 7267.9034 3651.537 24899.5582 258544617 nirk Nitrogen Denitrification NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 5950.5979 6354.635 4360.4094 3054.9746 11163.2449 6409.8076 4270.4519 2239.4866 112025.582 11345.9557 7368.309 2065.1523 2065.1523 2924.3964 9697.3049 6564.2181 5424.6268 6546.7727 5345.8302 3432.6982 6455.5691 10560.4587 2906.1831 12270.3715 9806.7241 11349.4829 2890.2166 3542.8289 6128.801 3246.8888 7158.9668 297210343 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5765.7206 11536.6083 6119.9426 7941.1733 4396.0411 6590.8511 8922.8913 54543.8668 11465.3423 5117.1576 169093.4727 11965.3548 7595.7297 10086.0895 3352.856 3352.856 4762.4795 9605.6269 7674.0789 9365.3052 10039.7224 8306.1834 6032.4559 8902.5155 10502.264 4746.6958 12410.4771 3888.2284 8499.1068 11050.4654 7212.262 11555.7517 3218.1793 10349.1143 365419051 urec Nitrogen Ammonification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7394.1152 4998.8973 8682.4434 4016.8352 3771.4162 17062.8189 5982.0526 3022.7652 101615.0091 4922.3896 8925.3117 5365.5241 6236.2408 6236.2408 4866.6601 15533.0297 6853.1846 4181.5985 4395.0102 9690.8307 2719.6989 15289.2549 11444.7934 13454.8509 4402.6538 15049.8092 5053.6178 22462.1476 6752.9002 238577226 badh Organic Remediation Aromatics Other aromatics Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 31327.1085 13570.4219 13979.3967 27516.6306 14904.8944 8034.0499 11336.9113 17678.793 9590.9013 318525.9831 31667.5339 23208.4178 20941.3788 18130.0538 18130.0538 8805.2146 27768.4733 12922.455 31439.4327 16883.7017 20230.8194 7838.9994 16257.9944 18015.4867 11843.9361 50951.5088 14105.1686 23904.9545 8540.321 15603.0957 19831.3157 13139.5868 38354.5431 319925450 RgaE Carbon Cycling Carbon degradation Pectin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 8642.7044 15313.4852 10510.0301 32296.0164 5099.7202 4207.783 2003.2222 5381.5113 2840.4102 193142.8665 4135.0149 13793.8122 9710.0493 6526.2404 6526.2404 3570.9864 7354.3701 7265.0272 10590.3312 7482.9785 5450.5583 3116.3306 6024.7691 19627.9174 8070.1464 14830.278 7066.0592 9790.6503 5566.2614 5912.3032 8061.3907 3661.7144 9210.2583 337739165 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 217492.1284 8798.0533 4502.5188 78688.8048 10520.5225 6980.1743 4787.0527 72497.9302 9949.9065 116674.7485 7518.4234 85669.6051 19690.9417 13689.3561 13689.3561 6204.8033 19225.3798 6088.1122 25323.5429 349455.5197 100085.0854 7019.8191 10919.4732 22946.2283 12965.7468 28144.2029 16452.2663 34502.7037 16504.6477 18859.9987 15251.5704 7348.5762 10359.2354 254392413 phenol_oxidase Carbon Cycling Carbon degradation Lignin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 5981.5786 1986.8184 3816.5896 2078.8259 4970.4228 4047.669 106347.2531 5328.7154 8139.0748 4256.8399 4168.9458 4168.9458 7334.9425 10610.8059 5448.2466 6629.8391 9812.6961 7972.8496 3588.6368 3935.5389 7596.9885 3890.5765 8981.6311 6808.1551 10837.9916 3430.9236 7879.9138 8319.1648 6019.4884 9421.1462 213926036 atzb Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 5659.7416 24297.885 6303.3416 3733.7006 3246.7572 3097.7776 5862.4555 6102.4875 125746.0457 3788.7639 7343.468 5474.7985 2253.1724 2253.1724 3129.2159 7261.1818 5167.0565 8708.4771 6617.7716 7228.9177 7634.9538 8402.6437 19437.108 4929.1985 6928.0273 4861.8551 5474.6728 8201.2993 3925.3248 178468918 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8888.704 7102.8401 7400.1315 5354.5713 6442.6574 23063.2844 8014.3339 12483.3611 9289.8958 6936.3128 165681.705 19751.8562 15352.3234 10326.6087 26258.5096 26258.5096 14819.9579 18114.5396 7541.9239 9584.1904 36362.9609 13061.8035 19286.7661 9643.1644 14576.4023 15433.6295 27994.447 11202.0991 14206.2007 7565.0505 15712.5073 10140.1101 9333.4682 30606.214 308213107 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6161.6498 8284.5495 3627.8733 5558.4503 2374.5136 82229.8308 2310.0807 2310.0807 29362.4808 7212.6791 15630.3778 8240.5879 2918.6683 31890.5324 6922.6542 6116.9288 12769.3388 5932.6075 383191204 amyA Carbon Cycling Carbon degradation Starch Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 343816.2756 5568.389 10833.6563 10441.3822 4329.6005 2920.6775 4118.18 5269.4423 72166.558 4029.6062 3993.853 1954.7099 1954.7099 3966.1686 9219.9681 6950.8585 4366.1196 5438.3237 6615.6724 2829.2236 2433.8265 7968.7331 15283.4044 15856.9972 6170.4326 8412.8646 2926.7429 4524.826 5247.3344 3154.3242 6184.0812 151302119 APS_AprB Sulfur adenylylsulfate reductase NA Thermodesulfobacterium commune superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 7052.2052 27336.7509 12387.082 4370.6575 19917.3285 5498.453 9838.8096 341587275 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Peptoniphilus sp. oral taxon 375 str. F0436 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus sp. oral taxon 375; 6576.1208 1369349.8067 497034.1639 12099.2604 2623.0382 3371.6379 3371.6379 57975.158 158228.3045 7649.3796 5322.0705 3886.8389 6268.1842 15024.7002 53424.5258 22327.0541 15966.7074 13314.0824 19013.8309 24766.4221 2795.0694 345094292 ppx Phosphorus Polyphosphate degradation NA Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 29249.4674 12186.7331 196937.4777 4193.0244 5988.3545 18056.7304 8043.0214 8849.0561 112995.5998 7250.9844 5825.7844 144732.1609 3103.8237 3103.8237 3444.6974 9187.9107 4889.975 18870.5678 12388.7296 19586.1295 3246.0549 28923.7875 10395.6846 8518.0209 19378.6612 12310.8061 13377.7366 4069.8067 29427.1048 12815.242 8546.5925 6458.6733 30525501 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9391.7745 5755.0029 4351.3084 7548.6554 6046.7159 5336.6837 35919.5894 5759.5174 5290.7837 103760.4676 9483.2406 5181.4332 6377.4716 4856.6192 4856.6192 13796.6729 9917.5226 7402.2672 7263.432 19334.5588 7975.8468 4846.1243 3697.1742 6670.9082 3327.1901 25124.5517 9816.919 11408.0527 5371.1332 23633.9721 10121.7581 10728.5958 8257.5588 313156812 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 8247.8098 6513.91 4966.2207 5309.3219 2759.1989 6451.4631 10546.1192 7101.4778 106273.5114 13354.8047 46725.4996 4067.4425 4159.4312 4159.4312 5578.5055 16193.5688 5683.9443 6983.346 8040.9912 5093.5676 5044.5487 5698.3242 10727.2508 47665.692 11533.309 3907.1292 8924.3315 3822.8746 6418.316 6188.738 4641.2499 13455.0536 330998750 tehb Metal Homeostasis Tellurium Detoxification Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 10678.4049 6726.4056 12428.4037 14700.2618 5826.6311 14152.4305 5426.319 5163.1395 6800.057 7183.561 19722.7383 108205.8912 40300.5294 11584.0324 54894.1847 8816.6248 8816.6248 14300.4626 24563.3578 11114.9555 13520.8693 9764.282 49926.036 7317.375 5386.6085 16600.116 4553.3245 13638.7003 8659.007 13597.6157 5466.8715 9364.3548 11780.6556 4894.2948 13553.0421 15613955 ppk Phosphorus Polyphosphate synthesis NA Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 15740.4869 8176.4845 34558.4635 2813.6697 3560.1145 2413.8702 5865.8625 4748.6285 3297.9736 160442.1451 4886.8803 5597.5818 5138.8232 5138.8232 8559.2911 5746.7036 5157.3756 4367.5493 5234.1064 4467.2677 3308.9039 8295.3762 4084.7799 15853.1563 6051.9621 8512.7054 3876.2159 4662.3621 4423.1113 2728.4693 5128.4845 311741987 bphc Organic Remediation Aromatics Polycyclic aromatics Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 6307.9258 7934.9259 5347.7025 2476.33 38738.4282 9809.6279 7248.1224 68760.9615 8931.7609 7229.3649 8417.3525 4569.6005 4569.6005 6053.8556 11115.3094 8930.7518 5606.3398 7111.4909 4162.4984 5206.3725 6313.9633 3225.6056 28697.4578 8006.9365 7487.2263 9011.0401 17116.8094 8717.5079 2947.6453 154309049 ppx Phosphorus Polyphosphate degradation NA Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6531.6487 4229.3676 8158.8508 3393.423 3288.08 2229.9453 4892.267 5355.8518 3425.3968 136202.7029 6024.3617 6483.7124 5555.1897 2788.701 2788.701 4674.7397 7696.5605 4870.3421 6182.4994 7401.9704 6732.2677 2660.1496 3634.0847 9814.272 3113.8614 12891.4014 7179.8836 1932.5065 3610.0948 4555.2959 2698.8188 4911.4965 383192336 amyA Carbon Cycling Carbon degradation Starch Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 6540.3034 57256.6907 4308.023 2819.5252 3874.436 4247.4064 6200.6387 6436.0486 116053.7253 5480.561 3787.0228 5848.352 6080.2677 6080.2677 2948.3363 6741.1841 6128.3283 11318.7999 5449.1856 2670.6987 6495.3123 9423.0146 2266.5086 14716.2538 7272.0106 9798.6845 2641.1869 4213.9033 6390.6567 3014.7314 5343.0417 116741415 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 85285.0653 15205.0487 122548.6227 42620.025 67661.7434 26107.3263 20132.9883 49279.7407 26920.088 32621.7705 42050.5443 45518.8826 911875.6483 52280.1977 74684.423 47563.2788 35697.2273 35697.2273 38582.169 64379.312 31577.3838 42336.8304 136322.3611 35000.5644 22981.6173 61189.7771 58415.803 64853.4931 95266.2183 53016.4456 70079.1066 43476.1746 55122.9065 80504.9023 30559.2501 91041.2428 161378932 urec Nitrogen Ammonification NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 22376.9707 33711.6448 23428.3466 410769.4345 5311.0308 30793.4781 14467.8398 17932.8133 62754.7157 26782.034 14151.2172 534470.3098 37670.0656 20408.1287 27342.9635 15571.634 15571.634 18790.4839 39420.7467 19827.3533 26434.2412 36237.0457 72375.4566 11264.5894 27762.9452 29528.6613 19302.091 192045.6869 49980.3045 32099.853 17913.9858 25181.1579 39188.7625 12736.8178 9180.4509 328950212 mer Metal Homeostasis Mercury Detoxification Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 23858.0915 12162.0183 2728.8596 112462677 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4391.2643 4165.1975 3110.6291 5553.7219 6272.5201 7075.9532 2088.802 2088.802 3530.6813 11627.1577 6222.4915 4687.3765 2396.6404 4057.2307 15710.7819 2496.5004 13353.7786 8867.7866 40874.5076 3442.414 3913.8402 3610.9782 2828.2474 19774218 dsrB Sulfur sulfite reduction NA Desulfovibrio aespoeensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 6464.521 6400.4674 7105.7281 12176.0047 3715.222 8021.2877 7861.1327 7430.0507 3838.2811 141878.1982 10093.9405 6840.7748 6132.7269 4377.8882 4377.8882 3698.4384 7390.0967 4390.4802 5222.9824 4559.8957 3897.332 9448.8662 11586.7984 4062.6888 9482.6477 10172.4258 7184.5051 13446.3855 3383.8264 4331.0636 6420.5517 259032994 xyla Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 16186.2827 11199.6771 52529.1837 20046.6057 9982.5873 10688.5596 6469.0527 7584.1695 17501.1103 56015.5196 289590.3683 38187.5908 30738.9439 23357.0616 14702.0283 14702.0283 9685.9515 25147.4801 10031.875 6236.7475 16389.1989 6040.7769 5518.2008 8702.5602 30237.6549 9678.6566 725804.9004 17051.8142 19033.6606 9205.9793 13861.4683 11608.7879 18266.1725 17516.1951 302038849 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 8323.6513 6735.405 7474.2686 10043.1158 5661.1196 2937.1509 2821.6321 6326.7267 8926.7059 3700.7512 169524.5613 9668.497 9046.4295 4737.9373 5318.2856 5318.2856 4672.933 15160.846 7230.5982 8083.6827 9428.7038 8353.4541 4005.0952 4034.1057 10719.6101 3378.5682 19651.276 5070.0606 10956.0897 6097.1084 5536.921 7274.6042 4691.6367 15280.9268 388551611 alkj Organic Remediation Other Hydrocarbons NA Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 13552.735 5098.6467 8145.8193 2394.6769 2819.7658 8242.6726 5222.4011 5890.5839 19702.4469 173230.5725 10668.7297 15787.1737 5090.6521 6148.9346 6148.9346 28292.8286 22680.5688 10853.0671 12059.2514 25906.2256 11796.6297 8310.8961 11575.1744 15734.0854 6478.6358 18188.8351 15009.0253 14837.1467 5382.4529 5661.7039 30474.7716 22100.5034 6206.2096 221233792 RgaE Carbon Cycling Carbon degradation Pectin Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 101440.2133 7835.2213 5085.4753 2609.5299 14463.7534 5147.1148 25601.5669 26980.2846 10859.3106 508333.9305 15047.6564 14666.5821 10800.1508 5917.1037 5917.1037 4060.6747 20541.538 15771.8191 14194.1306 18809.5689 9418.1935 5034.1462 74926.3562 15180.6574 13139.854 33827.3048 18414.138 14402.5709 9464.399 12455.0902 12459.3703 39634.3571 10286.4079 148281531 chitinase Carbon Cycling Carbon degradation Chitin Legionella pneumophila str. Corby superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 15047.9685 11265.5201 19996.0472 15600.4238 16537.8835 16654.9112 11166.1171 14932.6211 40722.3341 8730.1997 269176.5963 16996.1024 52039.7217 17105.0766 11793.0959 11793.0959 10105.6297 29090.0849 32623.7971 24337.2698 34761.2387 22649.8072 9712.445 11777.5948 22400.7093 102406.3347 36978.8004 58675.1288 26450.9085 21052.5732 20945.8075 14461.9982 14982.6083 22964.7102 46128463 cellobiase Carbon Cycling Carbon degradation Cellulose Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 4039.232 4742.6907 5562.8779 3488.4108 2293.0722 5844.0241 18234.4565 3824.9026 121284.2088 4068.3923 8949.2766 5358.6269 6155.2018 6155.2018 10822.1275 4097.6426 4849.2181 5116.6989 2230.3231 3971.0458 6369.5262 9334.5066 15032.6944 4569.7202 9883.4349 2759.4734 3432.783 4005.074 254295138 xylanase Carbon Cycling Carbon degradation Hemicellulose Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 4397.391 13371.937 134497.3243 3763.6584 2505.1948 3565.5239 5325.1149 170361.5877 6110.572 5896.9331 5487.8849 6122.4032 6122.4032 3118.3142 7419.7553 5273.0587 8718.6004 9381.7183 13519.3143 5925.572 3565.8188 845699.3015 2291.6488 10610.1309 5881.5978 7123.0674 4220.0606 3242.6947 3680.3127 6997.9887 357394450 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 25357.2541 60696.8671 13887.4238 11063.6029 46543.7557 10141.7123 38929.188 50295.9352 21672.5648 15155.4288 36440.2151 34772.645 482171.8131 35428.8129 27629.0776 47403.001 28324.5182 28324.5182 19700.3608 59126.5112 21884.6954 23209.5178 102982.3562 77436.0446 16712.9002 30444.2043 27311.3597 63532.2082 134349.2173 22289.4192 51906.8787 14604.3166 53204.1987 25482.821 15020.9214 17510.5696 41058922 chnb Organic Remediation Other Hydrocarbons NA Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 1066789.7183 9331.2071 3311.7209 10329.9651 4496.1311 5988.7496 3927.5588 16147.3943 8106.6192 4433.3474 3455.1408 4622.8735 4197.9034 302407215 pel_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 811066.9406 216439.4528 1100686.2742 1069705.4336 1955123.8187 2073165.1794 552664.656 666771.0953 630957.8566 561868.4536 696623.4756 376100.16 15892605.8019 802218.6052 708720.744 1644434.9351 595353.4839 595353.4839 472541.8179 642494.3122 479914.9567 991662.2679 1013582.3508 1078537.1952 439940.4867 382525.8766 1011385.7914 304595.3658 1063382.5771 740257.513 754597.5933 401260.9006 346392.0872 394863.6631 384157.1871 1910951.62 349687963 endoglucanase Carbon Cycling Carbon degradation Cellulose Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 40152.3675 32469.1573 45531.9454 80527.789 12060.3006 16077.0972 25912.4606 12134.1664 27186.7945 36087.2697 19473.3142 1026817.3732 37892.3352 37486.5249 38503.0355 24157.295 24157.295 16255.1613 42438.0236 30772.7757 179963.059 30027.3955 29638.1406 21315.6553 16702.7215 42255.3887 107323.8303 51086.4848 37829.5735 40987.2154 13615.1477 29129.5158 13952.2765 16906.2167 32587.8805 119391555 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 477547.3936 19690.0449 22071.122 18175.8446 4901.9812 7941.4629 12050.8872 310890.3333 6727.4036 14638.3453 14516.6368 24454.1951 24454.1951 4495.5817 14239.7823 27773.1543 9550.2472 15278.1778 5250.6657 6532.6502 16007.0627 13524.8556 19471.6738 425035.7579 13800.873 11972.9488 5991.4571 7425.8724 10946.5964 6616.8333 6613.3942 161380409 mer Metal Homeostasis Mercury Detoxification Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8031.4379 1999.2234 2924.3589 5652.0343 4345.545 5755.4259 4908.4348 110192.9668 8742.4778 3631.089 5734.7003 6305.501 6305.501 4958.6591 6313.4921 5682.8401 4035.4426 5016.1792 480628.0084 2676.1586 4440.9771 5603.7831 2367.2147 8875.8855 3768.3765 7070.8431 2035.674 7908.378 8698.5252 4902.5957 6025.5923 386398207 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7091.1476 6136.496 2215.267 2628.514 3813.2406 7072.8687 77159.7751 4736.0514 1972.1912 1972.1912 3023.9226 7913.2269 4564.4756 6011.2856 5464.5677 4748.9398 3096.001 3410.959 6747.6232 3030.75 8489.7929 5615.1139 2143.9692 3246.829 2973.4638 2879.0887 6309.3889 184194700 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 13905.0308 13634.4005 5291.4457 12545.6775 8362.1604 2929.47965 6537.8198 15913.4875 12119.507 22066.9089 17392.4242 199893.6211 28694.1182 12565.7628 17386.4625 17386.4625 25901.4643 20059.2677 8660.1947 7940.8939 29053.2713 10302.5714 24506.7382 7947.2671 27319.1652 6943.3652 13801.3899 42196.9947 5029.9849 11513.2297 4107.59235 13148.81905 148254694 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13284.7333 8886.1428 10109.6156 9085.3887 49911.0896 9404.7121 18365.4155 12448.6448 13662.8 17893.426 880876.854 24649.9515 11432.7931 26610.0626 30618.2138 30618.2138 10869.0643 40170.8143 14978.5834 28392.9711 14998.7572 14989.893 12214.1536 22230.0794 23596.5827 18862.7405 42940.8152 17979.512 22776.8537 9345.0676 19167.6483 29392.0259 28550.8978 18127.344 62392084 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 7226.3486 3370.7255 5499.9266 3735.9288 8076.3149 9712.005 3800.9524 175892.4112 8606.4153 7741.4322 8860.6883 8860.6883 7673.1295 11435.1239 10990.5124 8740.6629 7603.0374 4779.3907 18119.4143 4297.4045 10731.7807 3482.0618 18024.9907 9262.0576 10257.3293 4455.8135 6080.8393 7548.0349 3809.0501 10841.5016 307132353 cysJ Sulfur Reduction NA Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5140.7273 3049515.4401 803853.3614 4179.8158 169333.5792 349797346 cysJ Sulfur Reduction NA Neisseria wadsworthii 9715 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 9911.4424 8392.3479 12545.861 27477.8531 5445.8977 8216.255 8491.3062 5546.339 9400.7925 16727.4004 18442.2802 214352.2658 25862.6625 24524.6856 27571.4274 6727.322 6727.322 7709.4946 33187.5498 9962.0861 13249.769 29226.465 24838.9696 7265.7905 7637.8716 24008.4727 10637.9874 27244.5658 11560.6062 18339.6577 11109.0519 9728.6442 10091.3651 5897.2141 17844.437 139478279 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 44899.7768 19650.1985 38251.0037 93590.6102 37631.4717 13998.0966 43995.5886 59091.1904 24197.429 41771.5137 29967.3892 23762.1663 928455.3583 49488.0123 42055.4864 42641.6782 62314.769 62314.769 23431.3043 63328.1822 42119.5668 42403.4551 64784.188 60422.0501 26761.149 23210.4767 46766.0512 27724.1534 81843.1734 26836.681 61046.8371 26183.1337 42290.2428 47648.4157 19335.2045 321299.7596 347993059 amyA Carbon Cycling Carbon degradation Starch Aggregatibacter actinomycetemcomitans serotype e str. SC1083 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 11643.5062 7657.7787 67411.2767 11418.9988 8760.1246 10832.7486 11387.8164 17618.5121 12774.0083 380981.3585 13235.6559 12309.8553 7224.9444 9111.9008 9111.9008 10178.0865 28738.0364 11406.9715 18272.4146 29775.2559 24496.6148 8786.9032 11444.6417 16033.9451 10515.4567 26473.0288 8407.0765 16476.0145 8416.7478 11339.863 17919.9432 9581.5431 26597.8357 111152228 cysJ Sulfur Reduction NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 60641.6765 12758.2064 16243.8858 5092.305 147055.8433 4745.3131 80698.7971 9397.9376 9320.3376 15094.7052 26041.377 26248.1342 457162.9482 23811.3068 16264.4944 51098.5965 28475.6171 28475.6171 12971.0074 33970.602 25016.7797 14125.9749 34505.3192 20092.8674 8695.9074 17374.4877 29261.2368 18515.7655 49088.6281 94763.1288 30613.6543 10266.4988 21907.427 39126.7408 12420.8207 18957.9462 357969814 aoxb Metal Homeostasis Arsenic Detoxification Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 246416.0535 36746.705 56788.4066 69139.4401 65349.3307 22351.4398 196274.4898 249686.0787 70076.1651 192549.8448 257430.2648 128887.7559 1888218.1018 77249.6727 91456.6886 135015.6322 83638.7594 83638.7594 72129.1705 66869.7453 35920.5282 237493.0827 125896.3653 41806.8318 63830.8749 86877.7414 70969.9481 68311.8901 197413.2422 128110.3608 97112.4545 49807.4265 56155.2529 61487.9524 50871.2719 268630.0794 255919661 chitinase Carbon Cycling Carbon degradation Chitin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 7441.3906 9167.0711 6188.3082 30686.6635 8547.1297 19017.8153 9175.8246 13140.4404 5816.7422 11074.5419 7123.6744 181688.939 54202.1215 14986.7772 36059.274 22056.245 22056.245 9425.1935 16060.3714 10667.1354 27370.5417 26245.4576 11713.25 8541.3038 5721.1477 20516.9136 15096.9824 29463.4018 17555.145 15984.1435 7487.9286 45957.3302 9305.3429 9140.4231 8765.5247 332181573 amyA Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 17814.0379 15158.2646 5141.9988 4970.4605 5259.773 5640.3419 5890.3958 20418.9306 5097.3882 61901.3498 11752.9792 3422.6492 15210.481 5331.5973 5331.5973 17085.432 6172.8285 22400.322 13161.7125 5337.6085 3159.5755 9250.2844 7102.4524 10215.8608 12245.0228 5835.4302 7816.9155 11640.1478 9894.5528 15085.9453 10035.0115 16684.0527 46448394 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 17327.6342 11144.369 12109.9682 14614.1415 6670.4259 11837.6265 10175.7337 11586.3825 13811.1806 16413.8619 6689.9108 388992.5492 15283.7044 18990.4067 17301.7739 15053.914 15053.914 9572.1753 25348.463 17604.9328 23562.322 14797.7529 15785.6574 12356.8978 12355.7739 19082.5576 8909.8727 38601.4349 16608.9431 21951.083 8228.5218 9393.4434 11164.2821 11454.686 24712.4887 110634564 B_lactamase_A Virulence Antibiotic resistance Degradation Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6381.9048 3310.359 3691.5586 3022.7086 6866.4558 4004.4333 3955.9543 112503.5906 4232.25 7445.062 4790.6881 3655.157 3655.157 2669.045 8848.3449 5007.8745 6598.8845 6278.9914 2957.2123 4289.3848 7430.8259 2851.3873 12613.274 8960.2821 2080.9485 8168.1849 5386.4562 5648.407 389694808 ppx Phosphorus Polyphosphate degradation NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 22689.6833 8412.5441 13873.5385 3470.2185 15630.7248 4732.01 14052.5851 465431.8524 4351.1267 6633.2896 9694.4412 8312.5615 8312.5615 30901.5674 19764.4813 6391.4424 8134.3301 30594.0759 8522.2078 5517.1876 7471.1715 4283.4328 21794.2562 42698.0895 15666.8213 2533.8132 7161.9198 12903.1004 2868.3241 18420.4337 392101440 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 5S-0817 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 7081.5235 5567.0313 827413.5458 3010.8484 4392.6023 9130.1071 6678.6386 2907.1961 130947.3804 5510.2724 2082.6346 2082.6346 4411.3021 15108.6827 6064.1781 8000.4647 4415.9255 2441.5471 5539.8551 10191.1622 5831.3134 32892.3862 13598.281 9358.6434 5706.9815 5321.3384 4818.3749 5897.5156 354583011 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 5744.9728 9458.2343 5666.1693 7127.9566 3393.66 4816.1772 5358.1294 3063.9784 146793.5441 6535.8071 4988.5832 4532.4182 8416.0023 8416.0023 2593.7225 9634.7678 5660.6892 4529.2249 8143.343 10071.5356 2235.663 2962.4941 5921.0918 3192.0031 9859.297 5653.665 6331.1442 3968.8618 4628.5372 5228.9504 3400.1008 7931.7359 255078846 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 9274.1809 7752.9251 4637.6294 8631.8257 6458.2412 29300.9163 3722.2793 7365.0889 7265.7947 5169.5277 203338.7422 9498.0217 17550.1602 7662.9543 4749.1412 4749.1412 3509.6187 13391.2786 7079.3446 7566.9807 7422.0385 43278.7149 3664.2347 5941.1851 8247.1236 12469.0118 30964.7789 8242.8007 9572.7906 7650.7255 4392.9774 6287.1352 3416.9616 7742.1657 398057264 ben_bcla virulence NA NA Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 67580.6311 12051.2976 6703.0561 6622.6493 7030.0333 9619.5348 14591.7499 153101.6812 20476.5823 28311.1946 24524.3308 476955.4521 18444.522 29711.0576 21738.1841 52854.31 52854.31 14087.2642 49581.8689 30411.9782 69460.3428 100994.0413 74005.7708 17475.6963 70390.7662 32279.4666 18446.069 96417.9256 29940.785 47168.24 8636.1078 64944.7848 33901.8736 17024.2758 48199.1102 308799009 actin_Viridiplantae Other Phylogenetic NA Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 41251.4999 21186.5473 27064.5929 83568.2675 10508.9058 6582.0811 30996.5734 23055.1763 20126.9066 33856.9255 35666.2463 33537.3342 733271.589 37888.6021 32888.4023 38222.9527 41948.3222 41948.3222 39061.9312 73921.6381 39168.987 405209.4739 86279.6605 162059.7615 31365.0653 28313.2309 61601.6777 35590.9041 91804.1049 89948.8755 70125.4496 31391.2176 45787.5092 52121.7915 38625.4372 55702.0163 116609412 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9461.7762 12138.4292 18590.2878 2311.2744 17168.0737 4652.1142 7736.2341 9053.7295 16439.0312 217554.9146 10353.5806 11862.5221 33883.0005 25619.6186 25619.6186 7173.5207 40497.0053 18670.3708 4788.1884 27611.4315 6584.5526 9109.4763 9889.8736 28209.2651 18908.7164 256840.6377 23976.5197 17659.0842 6916.0425 11752.4395 32809.5733 13916.6743 13143.4463 15625036 soxY Sulfur Sulfur Oxidation NA Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 57282.5286 23064.39255 17368.8867 38878.17925 24766.32965 46231.429 31989.48555 467329.86675 54106.1332 33537.1647 16818.79125 65661.0152 32073.1079 20272.8872 36494.19195 127497.05885 58830.1098 110498.6661 32207.6811 44017.6614 18366.99605 36708.14775 35491.62215 133911424 endochitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 6626.0042 5091.1518 3404.5571 4063.2777 2654.3384 77891.197 3475.7454 111529.9592 7063.914 5367.6206 4407.8459 8952.6683 3488.8864 4526.1038 7482.934 2619.718 14079.5216 7341.4927 15292.3832 3157.7289 3627.851 5552.7322 2347.35 6035.8319 88643249 dsrB Sulfur sulfite reduction NA Desulfosalina propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosalina; 4383.6475 7691.4992 7116.1054 2305.2465 4348.5081 5055.2829 2462.0939 6799.5711 3157.7364 3762.2957 3003.8288 5691.0751 4039.3441 5087.8599 4764.4146 3951.0049 2864.2931 7020.0984 8061.8711 2168.0152 3765.3028 5042.7112 2249.9619 9220.8365 398940490 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM41(2012) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5166.5156 3625.883 9097.001 12258.8053 9625.1154 9185.3739 5485.8169 156228.0965 8922.6704 12385.4255 4796.9578 2870.973 2870.973 4451.2557 9221.4038 9113.4594 8705.4594 11521.7924 9294.4955 3257.1226 3702.8504 10616.5524 4369.3936 14023.7795 12763.9941 10690.8987 3979.6557 4859.8166 6775.7264 4421.4551 12142.6626 38488532 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas graminis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10657.9049 12509.6534 8777.4127 3766.4703 8091.4101 17981.9119 16569.3217 19623.9077 7958.9414 144351.2203 9956.9882 6851.5584 8268.2812 5263.2654 5263.2654 5512.9935 29041.9647 20614.926 23751.95 11555.3355 8823.8159 8922.6208 9254.4714 14802.3015 9453.626 22994.3408 17876.5715 16233.1855 14210.1689 8645.9629 11162.1299 22118.6859 13516.9343 334365118 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 38539.7883 17986.916 13195.0075 26789.2964 43291.0115 24362.8763 18461.6694 19900.7379 12125.0669 16103.3691 20323.779 10486.6866 427716.6135 25116.8648 25929.9377 22581.333 11011.3741 11011.3741 13896.5913 36239.0366 16553.2368 19271.4068 23284.1927 24874.4149 8264.6787 16200.7279 24935.5224 13154.3464 37269.9699 13506.1731 29905.6893 9002.8822 12143.3059 16004.095 8970.2497 24490.4247 119876197 linb Organic Remediation Pesticides related compound NA Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 239811.3445 5626.5987 2304.8444 4184.7808 7964.742 2354.5629 55926.1147 5425.6777 4732.7841 4848.4247 3232.993 3232.993 8141.9329 4487.9439 7794.3188 4396.3425 9985.7599 2033.0728 4783.0843 3763.4217 13353.3895 2877.0062 2737.5871 12714.3852 5064.1682 5402.36 357399566 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 338128.9767 14572.5146 56449.3064 24046.2274 35570.93 11819.8673 13073.807 69505.5907 330090.7753 44772.9845 31888.2511 44179.419 854001.2457 32902.1934 72634.4425 92251.9435 44454.4066 44454.4066 46981.5594 72827.9378 43608.2985 69685.8012 192916.5436 43384.5996 27328.107 54192.8271 217288.14 74727.4693 358527.5579 61261.4011 73350.7341 22307.681 46891.8413 53352.0475 36218.649 80200.6228 330469216 rgl Carbon Cycling Carbon degradation Pectin Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 20430.5887 14974.8097 9823.8942 1612430.79 33067.5204 12408.5134 12727.3318 8323.3962 6235.8229 17984.7469 16047.7563 17581.3105 342304.8808 13913.1425 14679.7771 16217.183 11481.295 11481.295 12940.5444 21494.6469 26745.4162 14500.8406 24256.1232 18268.2781 8313.9497 9702.6064 16374.095 6881.7386 50322.9894 23071.0309 18966.7977 5771.7805 14463.8794 11298.8853 11588.3821 17106.927 318056181 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 33499.7101 18368.4252 68297.3953 26434.2608 6607.8878 150271.8784 19002.1085 33781.2087 64667.0549 154129.0282 121782.0188 428692.7358 17000.5207 34181.5937 131186.9796 73845.5158 73845.5158 32719.0796 74291.5312 27508.9226 37832.7047 41364.6644 22786.57 18526.9905 43040.4572 24375.7282 37694.229 68823.8036 29722.9813 70716.9402 19861.2539 59477.6175 37673.7034 17029.6021 41393.9405 302436846 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6015.0724 5522.576 5075.9944 5937.1157 3820.3453 2649.7312 3937.8311 10896.1354 3394.2241 119874.9234 5327.9098 6684.5026 8603.8332 5603.9061 5603.9061 2931.6374 19644.5155 4323.2269 238308.4996 5996.926 8551.12 3233.9427 5387.8838 3426.7201 7319.2179 12049.9852 4421.3569 4084.5854 6095.8203 5006.4661 118029371 catechol Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 12988.8016 5150.7295 10465.5466 18804.8037 11896.0097 15037.0805 7322.1421 11110.6488 269865.8782 9699.4708 147603.1695 11521.2294 9438.6005 5985.3588 57776.5142 57776.5142 6375.7833 21601.6878 13282.4173 63406.9062 27309.6998 10020.844 9866.5561 8568.1006 10361.1662 9269.9241 39709.6995 27060.2375 16523.2219 8458.6044 14170.3161 20315.0024 8815.0598 14771.4324 227497029 ppk Phosphorus Polyphosphate synthesis NA Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 12529.131 5680.2436 265082.137 18345.1918 6852.0119 2698.6198 6432.6029 4198.9414 11026.4567 9401.924 5569675.5396 10849.9287 8491.6604 14461.512 28184.0781 28184.0781 21289.5556 8700.4797 6569.6041 5442.6742 10684.508 3998.4109 106310.9013 5003.9343 14185.8793 8436.1405 15982.4551 10073.7336 11545.167 11995.1281 9085.5921 9047.869 3906.0214 67567.8824 149176724 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 3825.7485 4976.1841 1979.2938 11347.202 5357.5151 3080.5684 68704.4725 5024.7474 3584.7274 13303.8749 4654.3295 4330.6443 13940.9043 4171.3835 5836.9766 2622.4801 8044.5587 1526987 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 55805.5408 4560.8265 3900.9323 9342.2364 5466.1853 8808.5917 4365.5877 61441.7643 5290.2807 8749.4564 59001.673 2958.057 2958.057 7938.7349 8433.5365 5670.5137 7509.471 7540.5285 6423.9448 5662.0947 3479.9659 24963.6637 18075.89 22579.8714 7157.1327 5763.2716 2332.2915 5904.3871 4133.0782 3659.6723 14524222 B_lactamase_A Virulence Antibiotic resistance Degradation Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 6441.7885 12971.2708 5229.961 7633.3096 8870.4044 4152.9085 6310.6479 5656.3448 10253.1813 283627.2866 11442.0271 10659.3606 8840.2081 6922.9838 6922.9838 5379.029 7752.6194 7134.1284 5936.8074 6907.8547 8054.3145 5237.1199 2740.0195 6873.7981 3879.4105 11533.1622 9349.4055 8874.1839 4050.8656 7003.9843 5623.3376 7497.6104 13495.443 296141515 bphd Organic Remediation Aromatics Polycyclic aromatics Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 143710.4911 79979.3758 105213.843 163939.7099 97934.5417 35007.3917 53708.4986 116018.0459 69403.3873 80125.4546 156128.3153 67353.8778 2177942.111 209632.407 190388.2168 135257.7675 118598.4214 118598.4214 72661.7521 137967.8217 65262.7074 406311.7933 122160.3569 184715.0937 65609.6124 135879.2625 135963.4781 80884.7151 221108.0479 111227.0346 145943.1461 66533.4998 103835.0024 114586.7434 74108.2266 114820.3423 221484896 gdh Nitrogen Ammonification NA Toxoplasma gondii GT1 superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Toxoplasma;species:Toxoplasma gondii; 317834.1657 23084.8986 49893.3942 467704.0793 143044.1739 42915.441 71627.9186 182921.7256 192260.8568 121029.5472 311828.3349 105351.0829 2696957.1518 107380.0714 236724.0822 190209.4412 133477.01 133477.01 108511.9054 283094.9582 153905.2198 374382.5494 109957.0614 72037.1213 142051.0513 138886.0474 239758.4262 378445.0128 127591.8178 129473.5545 91701.6877 150317.667 124099.903 89804.6643 269160.675 38427044 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 62515.9887 29120.3295 21954.4617 19584.7214 55959.9973 14056.5423 19824.1327 19521.81 11205.7654 21492.2572 50423.0271 34901.53 396928.2093 38231.8878 34330.7607 43250.4505 29053.4688 29053.4688 19095.1558 45087.2118 24843.492 41367.3451 78889.8575 52394.294 14760.8481 25199.8957 30486.6829 30423.698 88129.1095 40835.9992 45824.6997 20560.1707 22938.9418 32933.6732 27921.8558 54053.8614 316981076 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 31089.1972 14133.1022 18015.0327 18055.0408 11276.4733 35497.2863 16557.0182 9637.1358 15971.0971 19466.6555 11708.0759 480317.7628 29919.4381 20010.5579 18982.3089 10074.3426 10074.3426 12771.1614 28369.5715 18845.4659 28661.0648 24514.066 19805.8189 9360.0759 10021.31 21079.5777 9598.3391 32300.4711 16910.0077 26948.1724 10569.8117 18714.0176 14347.3088 8702.8555 42020.2738 229610694 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12615.9354 13625.6319 8270.7475 18581.8793 9502.2628 125323.4432 9168.8824 6369.0474 9697.5977 11052.0683 14985.63 5326.5715 312512.9354 13265.3085 12932.715 12406.7063 6528.8988 6528.8988 10434.4403 19145.3365 15593.4794 19934.3447 25575.6043 25120.5518 8550.3367 6334.6029 15175.4562 12086.8745 23036.0182 11920.2117 26615.3317 61240.0743 10140.476 22366.8381 7020.6333 22069.1708 158316598 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 23105.474 40536.3612 49156.2237 17320.0496 4724.2257 10722.3409 33636.2937 15442.4512 21215.3572 71325.4144 15698.7386 1098961.0802 30265.944 26966.8728 15384.2244 30657.1612 30657.1612 19335.0048 36270.5451 20426.6697 17907.1094 130707.0733 22317.5585 10728.2506 14598.3141 44694.991 9845.0877 65189.5571 30251.5908 31282.5281 9739.4756 15001.4068 24053.0189 12104.7364 21280.203 299751882 phospholipase_B_fungi virulence degradation NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5039.0962 8131.3139 2916.4521 3522.7796 3494.5306 51724.1051 4144.3502 5171.3602 5468.341 3966.31 4476.3008 11434.2377 3880.8259 5512.7125 5333.4886 2097.201 2097.9696 4650.6229 57233757 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 13860.7502 16258.4073 10353.2078 202526.7153 9347.4057 14732.207 10299.6842 16937.5978 14693.7061 20843.4016 173147.4727 18744.0929 24100.6656 21886.6756 11232.5342 11232.5342 269955.3992 50636.0138 16374.458 39243.1963 22821.8631 1206437.9118 243498.4121 11512.7465 20956.1725 12331.0006 36360.8496 30835.6994 23547.7869 10112.2091 16517.841 15397.9508 13832.3478 23820.5974 374331126 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9847.2829 7627.9818 7462.8304 2404.7084 99409.9385 7548.4063 6497.0785 16074.9277 5192.8835 156438.4459 5797.1709 11674.3393 6500.8083 3783.4952 3783.4952 3924.7278 19283.9496 7196.9829 7546.2079 12416.0686 8981.9191 5666.5503 17913.8309 24602.3321 34714.1425 326855.5318 7626.7455 16405.7536 48861.0243 6581.4873 10971.6869 3407.59 7112.9955 88706828 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 15124.4703 26086.7356 10013.5058 12977.5009 6504.742 10756.7281 10531.0206 5964.7628 10959.0229 17122.3826 8752.8157 218437.0023 15985.589 55886.7067 17133.0958 14208.9908 14208.9908 7180.1689 20404.1715 17183.7344 28228.4592 13692.4513 12497.4942 4888.1619 8813.9348 15627.7669 6649.4041 10332.0106 6824.4151 15663.1093 18857.807 6653.9033 17872.4062 4903.6582 11831.7926 139003691 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5062.126 3000.1379 2222.2882 2105.0947 4045.6895 4013.9684 4301.9639 4115.6378 5763.6773 3043.6933 3043.6933 2686.1587 7110.9266 5764.4064 4434.6329 6204.3555 4882.1443 2487.0564 6938.2643 2484.9091 9203.5792 5166.5868 8153.7006 2988.0901 3988.1032 4367.7542 2368.8666 6868.4058 403398675 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4968.8024 8101.3569 2700.832 3859.0562 4961.6858 2558.4112 7801.9717 6029.9642 10461.2396 2844.7624 12577.0228 6069.3712 7061.922 3418.6721 3003.9225 3315.8639 9966.1577 189211941 p450aro Organic Remediation Aromatics polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4245.5229 347829068 glx Carbon Cycling Carbon degradation Lignin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 4946.7617 8878.8146 5418.2918 2361.1015 2916.0556 63947.5445 8372.5797 2043.8655 2043.8655 5163.9581 7896.8801 12181.4986 9360.1842 2471.7358 2843.4635 2878.1893 2189.4844 3283.5247 7543.4067 3405.988 24923.4574 327194648 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium etli CNPAF512 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 12721.2564 2262969.4066 1795135.4769 6330.6982 119500.1881 3867.0309 3841.5206 11368.7602 14740.3481 2335576.2722 12806.1096 18809.9791 12636.0831 73568.9393 73568.9393 8500.8259 14075.6241 12813.7572 8371.8869 146034.0928 4453.4178 5728.8017 6664.8444 13794.3766 11289.2254 13996.6929 20510.4623 19824.2275 5199.8127 6385.576 10491.9685 3654.7796 8120.2378 338165358 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 227676.5605 8699.3281 19729.4984 13876.6223 10054.5514 46114.2398 20786.7195 13603.2876 323243.9185 24819.011 14016.3541 296227.9572 30645.9871 29143.3594 22644.3201 16353.7534 16353.7534 10383.1144 34072.7295 20699.7041 17440.7984 27437.7454 32494.578 19484.1919 25872.8908 26702.5841 13458.2834 43206.9621 13179.0845 25498.3089 23333.3021 20786.5888 24841.5763 11574.5825 24241.2509 285026943 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 44547.041 17671.2274 20028.3747 26595.9463 37167.2255 49389.4117 24115.0773 42770.1327 32871.1528 25387.123 38108.1733 41822.1164 1193662.7495 37933.9894 25403.8616 22875.9565 26371.2877 26371.2877 22866.857 44983.4538 26259.5192 58613.936 43595.014 94227.6092 31928.716 27695.9039 45472.7338 58361.117 98210.5551 47746.6364 60069.7828 24816.8049 38657.6618 44126.8246 28794.1256 78060.5259 257481039 catechol Organic Remediation Aromatics Other aromatics Acinetobacter sp. G16(2009) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4650.3167 6753.6861 9429.6218 26503.5909 6488.5816 2677.2839 6505.428 3985.1629 29078.9636 72910.7291 5168.8096 4593.763 3838.1935 2367.1636 2367.1636 3278.8716 7541.1206 6870.3671 4629.7932 4284.006 6556.8896 2752.2624 2439.498 8341.1583 4900.647 12667.5341 6634.5029 6509.3565 3070.2269 4366.4909 6279.4348 3829.3168 8484.9174 90856158 soxY Sulfur Sulfur Oxidation NA Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 17421.6702 8919.0031 4930.9692 7071.2364 26579.7788 13940.9098 11153.2797 14087.8683 73678.3613 56360.6758 574075.7165 14527.8865 32457.1444 108226.5938 161081.2541 161081.2541 308690.2824 22879.8607 16517.662 26505.9342 55405.0908 14188.1633 104654.7304 12525.6468 20293.9282 6454.2808 43096.4808 42964.898 28671.6357 10455.9932 22045.1898 232213.7633 5649.153 7640.3683 26278828 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6726.8435 225322.6409 5457.704 6400.9104 4897.5177 5830.7708 2946.3238 8094.0796 4629.43835 93889.62575 5387.1448 9537.2188 3284.6621 7710.0687 3622.5975 4300.2708 5461.4234 47799.431 4079.3862 3403.14335 9134.4364 3406.88205 11400.3104 7829.6908 12387.2773 3528.04135 9115.56105 6360.38715 7246.94375 8693.5106 146405306 xamo Organic Remediation Other Hydrocarbons NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6242.2841 53826.0401 3343.357 4985.7238 10521.2724 12461.9176 12889.9411 7664.5996 99439.9511 5123.1739 9521.97345 4426.8094 2899.2262 2899.2262 3603.271 7283.4243 5830.3211 4182.7564 6726.6399 4407.6393 3119.86445 3400.06365 9556.4308 3429.05675 9107.2263 7876.70995 12043.20445 3028.83735 4404.0525 4549.8018 3204.30595 6435.7202 342316466 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 15208.4222 210044.1229 7564.2301 7029.4409 80657.392 5548.8139 25156.1802 4067.3132 12801.4561 33769.377 99621.9643 7169.6463 13863.543 4688.1446 9950.2675 9950.2675 6993.2682 24084.3566 7196.5972 3929.3765 17103.1488 6114.8955 10854.5396 9168.5767 35957.4675 19706.3799 79033.4352 209498.7327 90742.9411 12660.5565 8932.7813 12663.7876 13983.5508 6849.9043 50982408 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5495.6084 2898.1234 3208.0523 98044.4915 141200.2887 320168.7732 22981.8401 22981.8401 31622.6879 2991.1021 10433.6455 2144.5253 5349.0232 4667.7984 357596214 xylj Organic Remediation Aromatics BTEX and related aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 362456.1311 72152.01 239369.0745 313081.173 242317.9042 130302.6754 248654.0808 343204.7679 189415.4711 269520.7197 212638.3498 199934.5739 12430628.6796 319033.0368 293094.865 1034250.1114 304182.4964 304182.4964 330094.4129 310643.0408 116447.0017 404895.6792 280691.2271 218601.0108 123381.7443 124454.9269 228997.1812 139068.4543 409521.5564 172691.1394 267002.3388 137743.3284 177048.6602 175082.0376 184431.7914 879765.6729 160960030 actin_Rhizaria Other Phylogenetic NA Bonamia ostreae superkingdom:Eukaryota;phylum:Haplosporidia;genus:Bonamia; 4604.276 79239.1767 3774.1079 2157.5226 2157.5226 10769.1242 6836.8746 23031.1702 66459.122 16356.2996 2767.8447 11695.4904 12146.6852 19519.6588 6467.1752 1876.6902 7739.9621 7681.3898 31409.7704 345872424 amyA Carbon Cycling Carbon degradation Starch Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 35197.9856 16634.2539 29061.817 45007.6611 16849.8557 17552.8454 23761.599 13446.1669 36831.139 27791.8489 19196.6884 447883.903 43936.5078 35137.6338 32671.0558 33973.0459 33973.0459 18032.9618 36156.3657 30390.3577 36061.5004 35319.3505 31126.2557 17739.4075 29860.9503 38040.6153 30651.0187 70968.1237 19445.3127 39922.3774 14145.4295 16038.162 23325.6167 14202.0936 48086.3376 373459588 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 12135.1337 286829.0436 5013.8516 8953.0079 20081.996 17700.1973 25410.1012 16892.1833 13581.1219 13611.1033 185245.571 20788.9687 13737.7988 12491.7676 10734.1374 10734.1374 12878.2497 19355.4615 7568.2068 5269.1611 9492.3489 3801.6989 5488.8721 9577.4773 46090.6337 6767.6696 30165.3838 8894.1175 14645.7656 5791.7019 10906.2295 9975.9371 15223.2231 15945.5601 384522763 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 10404.2949 2281.9429 6758.7366 76560.2422 5553.9718 4287.3238 4662.9814 15629.0846 8219.7731 6391.4691 7746.5996 6727.8866 2884.2396 3438.2443 7080.2535 12219.9593 5060.4057 16611.1517 4339.9846 3125.4732 7121.5339 3364.125 7818.2522 226292931 cutinase Carbon Cycling Carbon degradation Cutin Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 5182.156 2863.1318 7851.4558 4119.668 4271.4124 12242.8497 3910.9166 4955.051 3960.5183 2883.7701 11811.0334 4204.4761 2160.6487 3025.0715 3239.9392 222154058 mnp Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 5899.3761 19620.6176 3752.8188 13794.2124 53648.6667 3890.8097 6148.165 6067.1828 7077.2619 9694.3371 23467.5366 6762.2783 6762.2783 78157.0311 10769.9742 42892.0035 4264.1202 13936.6172 7623.103 38533.6928 12671.8363 11558.4012 4247.0777 15661.2801 16033.1154 11483.4176 2813.7106 8641.8921 28386.2389 13092.4413 8155.2538 338821454 amyA Carbon Cycling Carbon degradation Starch Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9415.3601 7390.9784 9100.1498 7950.5614 5963.4543 8818.1262 4823.3115 5630.1179 6102.1456 3980.3947 5236.2009 15339.4767 8119.4301 5131.2855 4903.162 4903.162 8573.013 13203.2237 9053.4457 23001.8336 14069.7786 10627.1151 4407.9271 5313.2745 12133.3411 4595.8953 16236.4455 15409.4407 15057.4513 4007.5028 6652.4696 8048.9572 4883.0116 13390.9179 320105503 alginase Carbon Cycling Carbon degradation Alginate Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 21065.0833 8947.9304 11837.8486 10942.0332 62288.0282 22050.1138 6937.465 22809.9627 23600.489 29262.8179 334130.982 25815.3687 20300.2794 15519.6755 18295.8439 18295.8439 11657.2809 25234.6176 11788.4839 49550.4559 20442.4372 21899.7607 8909.3208 62074.8104 28807.0221 12437.6903 35762.2466 30982.7816 29725.0641 14696.2129 15511.7796 15915.7729 17311.4113 19071.1884 380766215 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 26542.9673 16252.8998 2655.3593 4430.5566 338737333 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 105180.6972 75004.3406 15056.9774 17053.4263 135588.5587 19546.3669 28660.6426 21361.4464 86326.0043 21036.5477 26503.0442 550079.6413 19738.8134 11439.727 126416.4225 60564.1541 60564.1541 9704.6878 36989.5022 21674.6892 52285.381 51644.7326 36257.5088 77323.1702 14036.712 13327.3159 71373.8963 376964.8341 56651.531 126178.9164 16964.7078 33866.8958 45151.6855 42267.9535 21011.2594 32307917 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 59021.9687 49111.0657 46330.8481 4482.605 14783.5765 69494.5376 5016.7003 5276.0141 13794.7628 9725.421 9725.421 12201.3813 10731.9391 6189.1397 425612.1636 10225.094 5411.4636 4579.7597 7848.5301 3578.7158 13428.4727 13299.3464 7533.6267 2862.7156 8416.083 11530.809 3930.3478 11332.5372 63029767 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4023.7912 50976.0096 4434.8449 6509.0596 4073.386 6184.1438 4731.3055 2436.0476 6773.2348 10092.6557 3874.266 2917.7825 4306.279 49238235 PRI Carbon Cycling Carbon fixation Calvin cycle Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 4971.073 2395.1996 4853.3127 3437.0524 3171.9439 4261.7806 5104.1335 3578.851 28714.8138 9740.8336 17320.2936 2493.5249 2411.9824 6585.8149 5405.5546 7693.4546 33649.4136 5723.4692 1916.3951 44754.3019 3854.9507 3648.947 5288.4442 62131476 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 13554.5574 22278.1099 4008.6822 1705588.0525 4413.3671 6163.2995 2544.9602 2544.9602 3895.7897 3354.4724 8148.5578 7517.6612 5321.7004 6487.5807 18604.4509 94966431 amyA Carbon Cycling Carbon degradation Starch Brachybacterium sp. LB25 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium; 53282.0215 62793.9915 23510.9821 95280.0102 60580.0757 5390.7152 33757.0508 11400.5273 25047.7497 51582.3832 65546.6906 583023.2165 44326.1248 58919.7119 53744.154 43482.4577 43482.4577 18102.8709 49215.0984 18820.7498 25016.6233 22226.8018 18183.9138 15149.1211 10572.6249 34123.393 16276.3041 41625.2162 36479.2386 39914.1968 10073.418 26635.1916 48647.3966 16443.9012 28333.5929 33320075 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cellulomonas fimi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 23210.9771 12777.6697 18107.9747 20056.5576 26896.4162 21759.5306 21684.0806 12354.3314 13314.8868 19377.0605 11502.2882 12806.7899 21378.4742 16617.4396 41443.5774 15417.568 15417.568 13340.0506 29511.0827 20082.5962 24851.0353 22210.9957 40009.97 11582.8414 10961.6661 30477.9368 10758.3598 42006.1045 25765.5323 26715.5983 37843.169 17173.7996 15153.4948 15548.7668 34846.9796 27354699 hbh Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 29544.2498 28803.7935 9112.7553 37209.4523 528069.7696 20857.1619 27392.8793 35248.9901 58347.5656 30717.1906 32536.1025 483498.4001 80748.7586 31514.2388 43695.665 25429.9887 25429.9887 16059.1251 57113.4042 19845.8134 25688.726 41818.4864 37466.7885 16351.4706 23297.0789 23735.8319 25574.596 69598.4131 18335.1099 22087.0445 18868.5704 27592.865 28690.7415 18089.0009 31076.7251 116612728 catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8936.4744 16025.7886 12109.2645 108281.8133 22040.4083 95442.7484 89468.3777 13934.9799 4137.927 9566.3234 448241.1925 21429.9391 6076.5194 6680.9033 8221.6879 8221.6879 4961.226 112385.7976 6279.4254 7338.3455 15643.9307 129663.798 3845.8105 13692.9074 7787.7534 12399.6056 19272.8872 10243.4563 10637.6896 3920.5284 12393.1764 22708.8346 5356.6843 42628.2087 357426486 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 4904.1464 108121.2387 2170.2802 3814.9288 1944.5098 3193.7933 8031.0965 6700.4898 5751.1854 9109.7691 13597.7708 6056.4437 6056.4437 7519.6943 13607.5844 7206.3829 18161.8216 7963.0533 8019.034 10005.8431 6578.3035 6054.6366 12985.0618 11525.475 14775.9874 3323.1201 6097.4584 5786.8349 3393.4879 31479.2878 198264086 arsc Metal Homeostasis Arsenic Detoxification Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6420.4882 6779.6398 3371.2366 6387.4438 4116.6439 7374.0852 4236.3766 4657.0196 312153.2401 10892.2594 9549.0955 2247.4036 2247.4036 6574.1255 13499.3423 10285.0646 10846.168 13373.2008 13514.1501 3543.4731 4244.1718 10206.0543 3416.717 12781.427 7668.7892 13665.6892 4336.2489 5013.3309 10674.392 7060.5783 15504.5462 210065277 bph Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 39098.8381 6635.827 20231.5697 26774.0408 10783.6285 3520.5166 15077.1309 5820.8775 21986.2475 18568.122 20252.7411 150218.6385 23389.589 40730.6101 81239.8323 20298.7566 20298.7566 37322.7582 54668.976 14915.4896 37115.0655 65077.8958 16181.2382 26783.2022 43274.0131 25880.4375 28899.6533 61603.9008 48526.0591 25592.1887 12886.43 61712.9984 40018.773 62551.9402 20884.0886 358640196 tktA Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 40183.2273 16773.6003 577507.0469 4845.7677 5932.6041 7638.9968 21212.6179 27701.2734 8919.3908 46031.1694 20502.2679 248923.063 18070.9049 33647.3193 27300.0922 22131.2194 22131.2194 11854.5942 22043.3072 19033.4275 13038.3891 18690.8341 17424.4645 7275.7654 8514.2435 81929.5005 6523.7732 105537.2303 22566.2883 24646.0111 7315.1647 9260.867 13348.4704 6869.7751 395316.9029 379719776 glucoamylase Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 6079.2423 49843.4407 13642.1097 5008.8482 3888.8544 4428.1526 76026.4702 5844.9347 4688.5472 4688.5472 4767.6096 3605.9789 3136.5918 8796.1146 7067.0826 4309.7102 3835.3517 66801891 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 7150.5002 4407.4929 9916.3261 3684.9954 3640.4395 3512.222 8233.8103 3956.6632 65840.8706 6253.6014 6114.0938 4766.6914 4766.6914 4305.5957 12051.9677 6756.0516 3772.6986 8471.2779 9406.6783 3239.6497 7169.32 8496.055 4558.8298 13263.4845 11475.777 11102.5711 3310.9261 5011.2896 5625.5259 4913.3082 9335.6763 151281192 nitro Organic Remediation Others NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 5511.555 29245.6981 24998.0794 27639.9272 3873.8103 15222.6603 10099.2196 12875.2044 18043.1194 36109.8346 459779.9936 14800.8221 23689.4652 34782.0303 46034.3949 46034.3949 8419.0275 16252.546 10021.8784 4825.512 13953.9167 7644.2791 15319.2898 41128.7095 11341.6662 31862.9604 25647.581 51386.5724 10854.1971 17080.1298 17364.421 4920.1094 14623.6804 126507446 chitinase Carbon Cycling Carbon degradation Chitin Bacillus amyloliquefaciens superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4970.0759 3774.1086 3555.2225 2096.6698 3658.4992 3395.0582 5452.9907 315592590 xylj Organic Remediation Aromatics BTEX and related aromatics Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 12144.8851 15792.8721 36644.057 7243.2528 2265.773 4012.3651 4959.9955 3961.2137 4526.0355 96735.3818 6011.0898 7219.2795 7248.6937 15883.4756 15883.4756 3554.2036 8661.9235 9213.4393 4881.0605 4798.4692 4907.2034 18364.2906 4081.7637 13684.6482 17364.1925 14726.466 11348.0118 8052.6741 4505.0318 3326.4831 261371595 mannanase Carbon Cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 15237.6508 15596.2005 7627.9661 2713.0873 222543110 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 30411.5033 27692.146 20164.8767 21921.4212 13328.1778 8612.4832 11846.1729 19950.6231 22912.5485 23149.9034 795285.6925 65167.843 363181.906 34372.0943 18824.6354 43346.8032 25059.5805 25059.5805 22416.9585 53257.3078 30462.7155 39119.0373 87658.9421 21186.4992 20416.5721 39517.7546 66167.1659 24270.8371 70413.4054 53512.7524 57836.6741 28595.6391 26829.7422 28821.0891 50798.1682 43151.0703 389866606 ppx Phosphorus Polyphosphate degradation NA Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 9540.1989 4986.8494 30938.4206 4103.6881 12039.6205 93053.8997 5056.1012 10979.5438 592204.7582 24715.1715 24834.0684 39210.3278 9195.8061 9195.8061 5974.2124 12922.2566 6633.5816 8352.0003 11694.045 7278.3788 6029.6842 18557.1726 20129.5809 28806.7406 39837.4608 16830.4636 92191.0079 7070.2888 9410.1928 7989.1378 5527.9719 9108.8975 340525921 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 22521.9595 5414.948 32059.4277 146052.7157 23785.0647 11233.8901 24574.5497 2003.0232 13780.3519 12747.9362 17097.8422 281494.1441 18735.8017 24607.5802 39738.9742 24470.8203 24470.8203 8601.6239 12433.8687 20250.5695 30703.2532 9867.2136 16198.2821 20595.5735 10801.1608 25265.4592 6872.9147 36518.0708 21014.7276 25736.4618 20628.994 18700.644 12324.7739 7084.0596 16444.5919 268311258 urec Nitrogen Ammonification NA Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 7929.1538 14684.0875 3371.899 2699.9705 2175.9388 4074.2252 8505.9309 3364.9243 73747.6667 9858.7235 5758.0901 10106.5351 2954.5659 2954.5659 4322.1364 10516.6762 9215.8754 13815.5718 9927.5542 13709.9437 5530.3904 4298.3484 9166.8712 4495.6157 17317.092 5602.8288 13735.2981 4228.4038 5417.0097 7038.9434 3475.6094 13615.008 76058367 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 71844.1492 22521.957 46929.9583 58750.8344 10200.0728 12534.223 8895.9002 13327.1679 16523.1785 30413.6611 181453.0023 25409.317 16780.4064 26984.1428 13484.5164 13484.5164 4643.0275 19524.3396 12995.9256 18082.4349 16441.4046 14201.0837 20364.1117 14715.4737 20896.8596 9517.1319 136373.3318 26507.2839 21057.5513 10163.5019 11716.8906 18036.7899 19051.6977 9935.0749 389736981 chitinase Carbon Cycling Carbon degradation Chitin Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 38307.2806 10004.4384 9739.7945 2971.466 41235.9533 3405.3061 5456.3796 7299.9616 9446.4347 105509.0075 18600.8409 14435.0313 14099.126 10720.6235 10720.6235 7634.0433 26939.5273 5998.3188 6210.7974 23755.4318 5215.2189 7735.5896 5330.6821 13689.3554 6767.612 23163.9138 21193.7193 17349.5973 6962.1873 7214.1366 6272.651 3077.2585 52631684 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4125.3128 8619.9719 3743.2587 3201.8265 5243.3049 72761.1122 5699.1735 4627.7451 2114.4529 2114.4529 5620.4943 3840.5928 5657.1182 4730.8419 2688.1272 8182.2052 3500.4268 18792.9983 6646.0155 1897.1381 3481.6757 4119.9031 3965.1453 388486330 lmo Carbon Cycling Carbon degradation Terpenes Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 7565.8159 4573.988 8049.18 4546.9868 7387.7907 92278.5882 6537.9269 12576.4154 6893.2915 7168.8218 7168.8218 3458.8389 8904.2402 5214.5656 15157.7931 6969.9731 4778.3654 6026.952 9862.7328 3130.6809 22048.4891 13361.2952 9025.6903 4271.186 5285.0229 4575.4475 7719.0125 12326.8358 217970480 xylj Organic Remediation Aromatics BTEX and related aromatics Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 73373.3659 21595.1612 27118.1301 34461.5006 118984.8911 27575.4894 50500.2735 195755.0188 52003.591 58834.5947 49724.4487 39558.4781 768082.5308 239437.462 54150.5452 60530.2606 49825 49825 25269.9041 61401.1712 39105.9501 321097.5268 69296.4139 84010.6636 61156.0727 59540.5826 67825.5208 28538.8889 122389.3439 157399.2244 70900.3808 25653.0495 33081.9808 43380.5911 25497.1656 120477.0835 188026261 nrfa Nitrogen Dissimilatory N reduction NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 105025.0321 15873.1214 267440.876 12858.4999 43218.9504 14648.0819 23887.01 248419.3814 35029.7826 21926.0469 18463.6764 48975.886 355407.1869 68058.9744 30532.8371 43391.2664 26796.1525 26796.1525 12835.6939 35550.2015 19491.9406 24115.3236 49679.4203 21211.5026 61704.2969 10728.1683 27007.3909 14680.073 57537.3149 21387.5645 29811.2668 13059.1336 19394.2442 25796.8487 12637.6447 40867.1603 242780484 endochitinase Carbon Cycling Carbon degradation Chitin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 4383.562 3344.514 3533.2929 5258.4849 4655.6071 85136.3597 6081.1438 4302.1943 4905.0464 8575.7845 4531.2515 5058.1844 10529.6256 2698.6587 3813.9941 8531.1431 4291.0981 15410.7102 6173.6321 8883.0494 2470.7587 4451.4364 5492.614 2942.5385 7628.7745 374302820 xylj Organic Remediation Aromatics BTEX and related aromatics gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3968.2521 21435.6373 1916.5207 76739.6488 5479.7544 4118.7135 2132.3423 11031.4158 5732.1332 2050.5696 3546.4043 3043.3702 85671267 alkb Organic Remediation Other Hydrocarbons NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9631.6912 5863.302 214588.9336 2865.2211 3187.9454 4766.9318 3224.8965 8206.6896 7863.6091 2140.942 2140.942 2627.2313 180157.3745 5092.9052 11124.2283 5527.4849 17977.6943 12044.4343 2421.483 43991.084 18058.8837 22232.9284 2403.2466 5098.5218 3439.5909 2139.1256 19102.2142 358029139 mer Metal Homeostasis Mercury Detoxification Pseudoalteromonas sp. BSi20311 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 35471.5051 11434.8757 8224.1034 24269.1366 23349.4285 7923.8998 24680.3901 15797.7021 12671.8219 13070.5969 20802.6199 11922.1225 366823.1426 25763.6594 24989.2446 25860.2183 13026.6876 13026.6876 13262.1554 35636.6843 25361.4401 77305.1955 24206.9228 44543.9125 8635.7278 12592.9928 37532.9481 39350.3604 48944.8287 44714.3613 39532.8383 16598.6981 15735.4168 13526.2571 11593.8889 26051.3935 224010906 nitrate_reductase Nitrogen N Assimilation NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 4971.3153 2255.1207 3395.8785 15793.5338 63070.9536 8100.8577 4527.9108 3166.9496 6485.3178 4150.6092 5218.3997 4909.3831 2142.8083 2489.4118 6542.2001 2257.7764 8471.5153 6122.7396 3111.5545 4073.5459 3298.9014 2481.0569 5023.1355 161380189 ppx Phosphorus Polyphosphate degradation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 39671.0676 8960.9987 14808.5676 29379.2136 24378.2996 12213.6947 12550.9837 10793.1179 23565.9529 52570.3174 18583.5505 413906.9999 26681.8569 39787.5212 33827.3638 38903.756 38903.756 25469.0222 46275.3684 45835.7739 95036.3852 45040.6405 15671.3859 17591.9035 15668.4204 34562.0372 15716.2182 89616.55 37478.4682 35582.0942 225007.1794 53006.3689 25695.5705 10875.9935 96252.9136 115371535 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 19084.7763 109942.3483 14731.0006 17986.1559 7503.7428 7068.5386 16399.6545 9474.2159 13018.1668 16201.3858 7573.4915 263382.1649 16364.3712 25497.3844 23328.9999 12147.0228 12147.0228 7377.7206 20629.2506 17187.9665 101940.2715 43117.7003 29763.2014 11516.0543 13234.4664 17078.2244 7679.2264 27507.2426 16176.8187 23046.7843 7163.139 23641.512 14774.274 7740.5396 50680.4594 358635879 nasa Nitrogen Assimilatory N reduction NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 56843.1832 11221.5268 75344.0393 30207.6327 12676.0281 24661.6172 99573.4162 16545.21 21081.4158 90560.3792 48951.596 1375399.6175 43576.9904 35938.3666 44824.0002 83733.5687 83733.5687 28615.5138 35578.5872 23667.0604 35271.2278 238687.9588 20573.6052 55345.3518 42318.85 23974.1519 44260.266 97811.4085 50404.6881 130144.8007 75106.5986 73238.4122 31242.9952 20861.9813 368914.6101 363415249 mer Metal Homeostasis Mercury Detoxification Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 37813.6169 98545.0151 16209.8923 16754.9822 6343.4167 168279.0832 24220.0713 78441.5515 122763.8611 28795.4207 46028.83 1205356.6006 89454.5012 37702.8727 40957.6823 27572.2673 27572.2673 18010.4368 52289.0906 24107.7065 37676.5686 38434.6423 25746.8054 20707.9835 26783.3546 33633.4753 23138.5067 62172.7126 24371.9623 87063.6046 17093.3682 27948.5278 31782.9439 20312.0491 36266.0797 333448788 nifh Nitrogen Nitrogen fixation NA Nostoc sp. LCRNK_11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 8192.7231 8896.0327 6803.801 5429.4751 6952.2341 3427.6955 14141.5383 8442.9505 4584.646 162505.3976 7787.1646 6495.5714 9489.3083 7674.0245 7674.0245 4740.9252 14670.7435 8781.7743 9950.346 11658.8989 8481.7695 4989.6781 5191.8884 9356.9387 3981.117 17052.0052 5139.0382 10668.8604 3752.776 10736.9473 6612.112 3568.946 10498.4209 3157674 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 14132.6724 1619174.434 18453.7778 6877.9796 3836.0271 14148.2584 23099.1359 6541.6796 167677.8981 11987.7643 8432.1119 14391.83 6428.222 6428.222 9354.4802 16829.5191 6998.8834 7822.0733 7346.8961 59228.2752 6069.2494 6029.1109 12515.7302 19538.454 34594.4005 4410.6373 10668.6833 7380.6939 6455.9763 8273.9874 7283.1501 8871.7256 312199150 bphF1 Organic Remediation Aromatics Polycyclic aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7352.1689 4451.3064 15727.6764 4650.9473 4434.2588 5664.1653 4365.7592 94290.8745 3637.1612 5031.3677 12034.7093 3478.8156 3478.8156 7772.4367 4021.2295 13028.6294 2485.5721 7066.2713 17450.4358 2194.0464 9209.2981 4548.4365 7923.0291 3231.0844 3909.9256 5211.2411 11848.391 296140891 limeh Carbon Cycling Carbon degradation Terpenes Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 281937.5458 39750.0148 121429.1026 123648.3031 123481.4619 70408.8991 58996.6861 59181.0776 88326.7165 83224.6607 79712.739 117987.8354 1730473.2414 110981.6104 131156.6973 195520.5019 88332.8976 88332.8976 53873.0528 90172.7439 210107.3703 133955.8905 74249.7589 503624.6753 66010.0963 63668.6402 81973.4695 46839.719 198451.3089 71314.1813 134107.8724 30552.1329 87925.4728 159068.9094 49187.7375 238103.9146 116626300 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 5189.0582 36376.5295 40496.5675 5535.7633 2385.2431 4746.7229 4359.5882 2896.9319 78552.9909 4699.6842 3539.1729 4582.7765 3956.5906 3956.5906 14397.248 5495.4837 6791.8026 2752.9953 3007.5264 17372.5665 8408.7368 2984.5254 12635.6472 3569.397 3592.875 291608837 rgh Carbon Cycling Carbon degradation Pectin Enterococcus faecium E980 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 4496.2393 2214.4714 4809.7051 4492.4283 2521.7568 124380.9549 4307.0707 8269.1522 4803.457 2415.7613 2415.7613 14397.3379 8276.5588 4280.0233 23545.4491 5122.8639 3675.2973 5776.3228 3144.6851 11930.5499 6288.3943 2134.1558 3772.1689 14636.7962 4518.5686 6676.9684 398305288 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus vallismortis DV1-F-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus vallismortis; 265984.4119 12135.6565 9940.2945 15768.2007 13604.8005 12771.0751 8577.6791 12094.6839 17155.4985 5729.3739 391373.5372 20431.5081 18166.7609 10230.9479 5675.1725 5675.1725 11753.063 19025.1509 15479.3525 36366.1106 19425.1989 27753.6379 7570.1928 10474.5842 172090.0489 9204.6962 33448.1885 21259.1547 17327.1482 8872.6767 10528.9904 10829.3439 8295.0159 24232.8016 77359842 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 5541.7849 9519.407 11396.4327 2666.0856 2098.5176 2098.5176 2374.5475 5408.4157 11430.801 26278872 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6732.5079 39399.8225 6878.6942 5648.4337 3403.9254 6379.279 10945.6075 3031.2191 67412.6363 6709.5215 11556.5474 4775.3209 4775.3209 5146.1603 7516.345 9242.3137 5902.6059 8821.1276 13371.4567 3572.5001 6340.0732 8176.8718 2483.6651 13610.6746 5773.6183 11874.1796 6381.5581 11158.5281 4641.796 8339.9368 166091247 urec Nitrogen Ammonification NA Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 6999.3442 5908.3805 10096.0803 8017.9707 6213.072 4606.0088 6238.6465 8419.7152 3371.8679 147391.6241 8037.9586 5775.5184 5238.5959 4287.6061 4287.6061 5684.2325 14409.1625 8287.0416 7118.4241 10497.8167 12541.8501 4934.6303 5826.4969 13225.5832 5605.7264 18902.1024 5645.3858 12770.1025 4715.6496 5631.095 5807.5883 4879.69 14364.4567 258405620 mer Metal Homeostasis Mercury Detoxification Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 22213.8989 10418.9431 21615.9194 13736.8246 8538.5589 16652.3698 19303.774 11874.4078 20334.78 13872.634 8431.5481 280256.0734 17124.3127 20706.9954 9844.4547 25739.4185 25739.4185 10418.6088 21876.6844 16973.0789 18412.5135 16308.4329 22900.8051 9441.4394 9202.3131 19862.7076 8486.5208 34660.7169 14579.3302 19482.8567 10106.846 11418.4188 10789.4468 9563.6462 27121.6701 393720754 chnb Organic Remediation Other Hydrocarbons NA Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 12084.0118 478980.1947 114100.6241 12419.1437 5031.9945 15538.7316 6689.074 12840.9459 35400.0326 15694.0445 318945.8535 22092.1722 16167.1345 12718.9476 14683.4806 14683.4806 10221.6253 19166.9111 12674.7786 10431.8474 19575.8451 23303.2858 31806.0892 8216.8563 18709.4738 8090.6776 29169.7571 13825.1484 15512.1599 5849.2862 12141.2315 12602.5856 10202.6993 28561.7415 66801879 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5825.3557 4601.9405 4322.0132 6091.1023 3593.6865 5124.6389 8815.6331 5259.5325 130556.557 15652.848 5735.0464 5598.5427 5598.5427 43398.8277 124596.9507 10715.2078 3672.6502 12075.0254 5577.2295 10894.0128 3670.8254 9678.0001 4127.2997 6254.3367 121588488 nifh Nitrogen Nitrogen fixation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7609.0487 6135.2756 13339.4913 3320.3428 4066.7063 6661.7545 3498.2573 25247.3551 2579.2359 2579.2359 3211.4399 9040.1216 6841.8407 11975.9124 6439.0562 3330.5563 12860.4117 8261.1588 6368.4424 3523.1416 4373.8075 8682.3616 3687.1927 7253.9771 119720171 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 3949.2156 21051.6564 2075.9268 2762.0819 3944.3719 6415.9878 5129.2589 79352.2872 823025.9214 4087.9901 9569.4731 6508.9022 6508.9022 3158.0523 4021.7241 4003.2 2680.0644 2947.3614 17525.8396 2023.4374 4098.9594 8294.5806 1586.5578 3005.3121 7223.5999 77920456 nrfa Nitrogen Dissimilatory N reduction NA Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 6961.5841 6238.6687 9543.476 5462.8706 6393.6555 5485.9491 8080.5136 12353.5421 11038.55 146954.6744 8034.0074 8383.6607 6229.3366 7559.9344 7559.9344 6367.3106 12848.1573 9546.5013 15417.922 30396.8159 12815.5791 6742.9678 16475.1129 11686.6139 6624.7088 39780.4047 57261.3676 12950.1884 6879.2273 9659.9074 18638.3461 7878.6614 15525.1216 80563498 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4196.6995 4083.4873 4610.9869 4515.8085 31702.7144 2936.0572 2936.0572 4483.9858 4284.4839 2163.8868 2428.7821 7863.8545 3316.7954 377562630 amyA Carbon Cycling Carbon degradation Starch Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 4061.8557 8875.8575 22938.2866 30051.5159 6248.0341 3941.8729 14276.4082 4680.8477 186140.0712 4023.694 5103.446 6283.2328 4911.9742 4911.9742 13651.2092 5464.1324 6211.5255 7193.0498 3115.2708 3084.1487 7582.6659 21903.847 33204.9735 22985.0153 12656.3513 4062.8318 6880.9433 8621.5785 2575.6414 355374517 atza Organic Remediation Herbicides related compound NA Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 7349.9969 6571.1652 7418.207 4160.7506 4192.821 6330.5447 8454.6334 4167.6485 109759.7741 6391.0339 5264.6901 44391.238 44391.238 5676.2053 11775.9606 11564.5986 11162.8219 6475.7986 8548.7379 3241.3365 3724.5002 10882.1918 3882.1336 14582.0653 9967.1085 11213.1183 4575.7139 7683.1904 4681.8901 4598.5017 11911.7867 298717696 bphd Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 25647.4221 9875.2383 17729.5234 11154.2941 4578.9317 13765.0063 33571.6052 16054.662 16437.0325 21842.8063 13474.6943 327378.8083 24980.304 13240.5577 12371.8495 9004.5429 9004.5429 12881.1238 32064.765 16994.4652 17130.5079 29369.8996 29138.0769 9371.3738 8271.9662 23949.9458 8441.1048 41534.6736 15686.7585 31025.1069 9730.9138 23445.1914 11355.9624 11736.8123 24934.7803 119373576 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 45682.9536 60582.5041 22373.4333 208899.201 78048.9096 197248.224 27229.8421 27824.6288 30340.2387 49781.8837 30509.8368 588643.4312 27957.6605 38478.4521 51517.8479 29144.4296 29144.4296 24213.5213 64490.0947 23390.0021 46471.4273 39786.4066 85763.2034 71524.9193 22568.412 31775.3587 53156.2236 76969.6827 72752.8501 66149.3329 108187.7192 39003.0957 102241.4166 27601.8889 77110.1584 386382314 amyA Carbon Cycling Carbon degradation Starch Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 57438.2347 13729.8953 34407.647 457570.9436 105461.8421 6911.7583 23263.1427 40488.8917 38831.2805 32718.4366 37519.6245 40775.6276 1172218.1944 103987.9658 52094.5268 83950.6493 41465.7393 41465.7393 60836.6165 62754.6477 34631.0869 45991.0653 70958.3419 550461.8558 39511.8644 32102.3608 51359.7313 20764.9827 95335.5272 53149.4637 55528.3237 17002.6787 31121.6262 46161.2637 29678.4187 79546.6962 3929478 catechol_b Organic Remediation Aromatics Other aromatics Comamonas sp. JS765 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 11097.3977 7239.5847 17988.7482 24759.6483 4462.2158 10341.9636 10356.1887 4730.0227 10679.5739 11051.8893 5695.8095 322143.3779 13988.5236 13382.4113 13278.815 6548.6225 6548.6225 6663.7241 15213.3137 16525.5546 144659.8245 15175.583 29193.1247 7149.6977 8638.9303 19743.1293 6933.7902 28644.9651 13597.2826 16785.9291 7014.5163 25502.8302 7160.2558 31563.7902 19482.6463 315279644 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4549.1216 7584.0142 3272.8997 4547.4622 3016.5718 5629.5091 5629.5091 4310.5845 3292.6782 25889.2853 6053.9663 3099.4171 3516.3327 8803.8256 2233.6624 28542655 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38950.9105 7856.0599 4789.6885 3737.7382 2799.0196 6928.3839 5212.6123 5810.625 258674.9455 11748.7232 7386.4884 6811.9544 6281.6177 6281.6177 3164.3217 14377.3439 9259.8863 9843.4886 7812.7279 8289.7182 4043.3386 3728.7497 6700.0971 134689.5981 98110.9518 11197.3402 3244.3873 6595.3396 8634.707 4520.2684 6284.2283 262085241 amyA Carbon Cycling Carbon degradation Starch Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 78779.9729 4052.5996 8475.4565 6723.4811 5385.5791 12739.5335 9772.5875 2370.0419 2370.0419 4902.0742 7040.4707 36961.4181 10258.5046 7334.4711 3775.4964 12852.626 11544.386 6285.2376 3771.5099 3764.8774 4244.3254 8883.3279 118424419 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 58597.9668 158731.1725 17491.4202 18453.6972 27477.5372 19250.3169 160804.0878 33389.8665 35298.0467 57358.6794 511696.3245 34358.8528 35961.0667 22997.3958 21935.3293 21935.3293 19366.3844 42550.3015 23161.2463 33687.7379 73818.4462 191170.4316 34200.4041 17910.3593 27109.9907 18389.0441 78518.7967 33290.8404 31098.9823 18609.4923 24668.8042 28452.9811 19286.779 54588.1893 109452555 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 44761.9182 16561.2052 27942.3652 47346.8356 44682.079 13620.2312 137889.5146 34978.487 23266.9063 28736.0548 133500.7923 17647.5256 1063752.5438 48383.3659 35459.8499 41024.9864 31762.8654 31762.8654 28299.0741 53508.0223 37432.346 40439.9808 50069.906 61129.344 44522.7347 21423.3927 43641.7195 20356.9384 86253.7209 42398.8235 49431.1873 21282.375 31255.6083 33972.6092 20922.4534 62798.0386 294508351 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber M8 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 12986.0202 13150.2592 35034.5263 9224.1429 7823.6911 11905.3379 4287.8676 9767.7172 39275.4863 8073.1236 223955.3573 14422.6783 15057.6057 15537.4023 11330.1869 11330.1869 8048.2622 29229.3206 47187.3598 15398.2502 23406.3129 15323.6449 5867.3137 17703.1949 37166.6407 7750.508 27990.854 14607.1172 28036.7812 8859.2531 9359.2167 15233.3648 6491.1318 10584.0997 83951972 TIM Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 61383.8919 14791.4927 153050.6018 10995.8553 9459.0846 5511.2333 5015.4237 21211.7424 5463.6825 16258.9704 99173.7671 18603.7502 320961.2724 37463.6425 38657.9784 48624.8853 27543.2719 27543.2719 35608.7164 41101.6833 29484.1259 105460.1278 53941.8771 22718.3683 19041.6163 21936.3618 49095.0426 15999.7793 62431.3066 54104.0072 31085.4296 7857.892 23194.4781 29258.475 13463.1402 27897.1646 299526568 arsc Metal Homeostasis Arsenic Detoxification Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 26464.4244 12073.0728 13938.0956 31023.5809 20149.0971 8896.6628 16894.6544 7546.8924 14052.731 86314.8667 13223.1382 483482.3166 54380.4942 19095.7095 23632.48 12086.7362 12086.7362 10696.915 29275.2459 20804.2111 20787.259 33687.9513 21143.0038 11802.5558 21458.7749 34850.3006 14098.7203 45711.698 44760.508 179981.3444 12480.6996 20598.9111 15250.4077 9757.3634 53998.9476 206567312 arsc Metal Homeostasis Arsenic Detoxification Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 92152.999 3542931.5461 12000.1918 1922042.5468 10239.9406 32019.4119 6390.6643 3098.1592 62319.2307 35956.8496 598434.2707 998324.7756 12799.6766 13485.151 40657.5508 40657.5508 352835.0243 344806.03 17022.2544 7266.4069 25376.0412 5754.0796 15285.004 42232.4378 52378.787 161474.9079 183317.6266 168602.5325 124151.8012 114290.9576 113588.9856 108928.263 11860.6156 198262880 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13507.3416 24880.1201 24774.4215 6177.9189 35765.4093 25821.6375 3622.7959 14721.9993 23794.0839 20846.5003 254035.3652 11016.2404 17837.8081 13214.4143 33825.2317 33825.2317 20572.0155 16491.7707 10290.9967 17876.1763 12901.1884 44002.0698 13215.8689 49039.7608 10408.8672 17724.1554 72772.0057 24408.514 21231.0924 15848.9965 29893.5239 13950.6131 17480.7233 25638.5528 159044821 dmsa Organic Remediation Others NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 56540.0403 19894.7271 13390.0822 3157.5812 3370.5735 7042.0828 4693.2232 83331.0992 5420.9471 7754.2195 8773.4095 6124.0053 6124.0053 6112.5764 16161.2855 4372.5319 4346.8425 7421.3421 3091.0725 11577.209 8455.9527 8710.6984 11714.6469 4234.41 3785.06 171465226 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32361.8153 10239.4769 21388.2494 12801.0171 14050.605 16819.4281 9200.2324 16081.2902 24229.7757 8825.041 522219.3602 23524.305 20150.8552 22351.65 11001.0974 11001.0974 10898.4166 24274.0074 14941.8066 17873.3267 23088.2603 23315.071 9365.1563 9001.6261 19188.3514 7891.5204 34459.7967 14631.7487 21377.7385 7398.7473 11525.7645 12430.9169 7537.9329 21024.0875 85777065 amyA Carbon Cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 6399.7375 8228.0414 3955.6243 2966.2615 13854.0802 5614.2347 12729.7317 2684.5471 2684.5471 4148.2363 8578.6232 23340.1217 64460.9169 5620.0559 4500.2256 3809.9319 5894.0105 4840.9016 22568.1853 5815.4539 7437.5628 4502.8296 7479.2759 4114.1258 4654.486 8758.679 118424479 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 34352.9132 14679.0473 59129.9067 67140.6867 20964.6792 24053.1531 43294.7455 39263.9526 15424.6709 27420.1105 21471.7292 563884.1838 11358.6774 34210.5571 31897.3021 38813.7994 38813.7994 5796.1951 27660.5828 98575.5721 18219.3506 124987.0991 14621.6746 13383.721 30336.7878 16089.3631 130387.849 41241.6786 39079.8037 38096.1768 5976.3723 30517.148 40726.8425 10661.7856 24157.0647 169832028 aps_apra Sulfur adenylylsulfate reductase NA Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 16734.7228 13755.6845 8663.3824 41397.0998 4727.6843 9844.4779 10412.9151 5631.1719 201935.9906 12502.2842 48571.9823 4952.2365 5056.0574 5056.0574 41799.491 18334.1758 12018.273 160131.8961 11074.1047 11251.0066 5413.355 5934.4533 9955.2517 7274.9337 18214.6575 4088.9995 11789.3268 7511.2514 11005.203 7958.7808 5170.088 14920.9508 122726265 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 16373.8564 13087.8796 27452.3979 41311.9103 4294.7704 9406.9912 13537.1713 12134.2942 19327.0608 17414.3721 10571.8956 382803.6667 32799.2456 32355.4716 27107.046 14295.8066 14295.8066 13797.9195 26688.2604 13642.7503 21149.8754 26323.865 19094.222 9403.0132 8962.3639 17664.2459 13285.0252 35077.4683 19579.8156 25003.0622 12714.6197 18055.8586 15083.1572 8268.4458 26501.7967 385699559 nirk Nitrogen Denitrification NA Neisseria sicca VK64 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 117368.9138 31814.4643 107796.8419 72235.7651 124015.5968 65065.0837 32718.7985 85807.6843 29947.4819 64263.6873 155771.0774 99142.1447 1113393.2396 131108.6479 58453.9441 84060.779 40446.7929 40446.7929 51461.661 142620.2425 68606.7798 94908.2195 116750.323 62885.0988 49796.5241 40480.9809 113063.6734 23582.5387 330195.6343 99827.6461 140520.4198 54594.328 43055.2262 162274.3491 32341.6689 64301.7037 227508235 gdh Nitrogen Ammonification NA Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 11535.3296 8575.1685 5843.2894 9321.1649 6064.643 7141.046 9226.0143 8353.3914 6122.3184 279475.3739 12327.4054 10318.6292 6102.399 4634.182 4634.182 5028.6537 14696.3686 11025.3409 12326.3087 15340.7425 17505.1961 6126.4449 6187.2355 15082.5841 6007.2581 27897.5085 13400.1346 17256.1627 5851.842 8585.1901 7220.8069 6921.5588 18489.0636 1771521 napa Nitrogen Dissimilatory N reduction NA Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 11979.3266 9243.4727 8209.6643 18549.3795 7403.8693 13897.1647 8470.543 7779.7328 8824.8826 11550.7109 6697.9598 145971.2223 9302.7418 10447.7955 12719.8543 6133.5933 6133.5933 5493.9626 18868.7761 11165.4049 9830.2746 13197.4001 9003.035 7070.7157 10309.5942 14210.6399 10044.6529 66688.079 14589.671 15164.6222 7274.543 11670.6059 11643.7921 8319.3806 12638.4782 115397179 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9918.3073 8987.0167 15699.697 19352.814 7157.8713 17741.6143 10279.505 5016.512 18410.8722 12299.2688 13524.6274 594231.493 33265.9093 32469.1984 55773.2275 12759.1398 12759.1398 11443.6766 33007.4165 19331.9614 118362.5185 18417.9628 15136.9089 9441.4756 11683.4149 26681.9149 7485.2904 34626.1538 20958.8999 27314.603 9017.9251 11789.7994 16477.5356 6640.7347 20225.2994 396926195 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 127749.5362 100750.3302 9608.0986 60786.8717 21512.1193 20881.972 33722.7175 13883.4775 30637.4784 672938.0395 104854.4636 1338132.1771 83131.112 234737.3175 51869.3027 47647.2532 47647.2532 56697.369 63435.1048 28865.9541 45611.7244 60864.4084 123733.1232 48682.4532 232246.7511 64229.6288 27485.8491 136870.8435 91854.7545 65352.7467 60314.9204 28736.0789 50612.7158 34407.3707 42911.0513 149782997 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7740.8428 3538.8928 13154.2392 5353.8396 17067.9659 13175.5929 4510.9936 204911.5987 11883.3661 12791.9986 6550.822 4712.8309 4712.8309 3816.5938 14082.6299 8871.7344 8571.542 10794.6561 10229.1034 4220.9025 26986.2387 9085.8427 6937.2251 17058.9864 8000.0699 12633.4243 9656.7696 5382.1765 9194.1599 11069.0428 12250.6022 158138808 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 22294.3348 18177.6807 20179.2391 3613.9426 7336.3328 5178.082 5681.0373 20857.6474 16047.9423 14840.4807 14840.4807 6406.5177 6699.0133 4097.9572 3682.9624 11753.7284 5579.3616 2918.5013 5893.6098 22129.6724 10310.6272 10998.7189 8979.1648 8787.8112 4009.2466 7913.1211 4346.8128 3934.6281 353182301 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 35014.0133 27344.2215 20920.7643 17815.8155 96536.3517 5957.9714 11680.1033 6484.85 91374.0404 18091.5673 10437.0723 107682.0862 13963.0299 36812.775 18140.8556 27849.4317 27849.4317 15042.4064 33937.4726 10528.6781 44015.3251 189823.9722 19326.357 17462.6526 17041.3066 46066.5363 15335.8113 39702.1331 26209.2612 88220.3986 7643.3146 9865.9179 37144.6612 7914.7349 14473.5811 307586786 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6844.7795 4935.4385 8622.8997 3385.4122 7583.452 3202.0131 4513.1943 8081.4317 5121.359 162129.0742 9537.8559 5350.5421 5293.5198 3245.5536 3245.5536 4723.9471 15463.8385 26087.1362 12804.9202 10686.9675 8900.6893 4373.1371 4627.028 9711.2647 4716.7825 21327.137 6951.0292 10768.3812 5760.6074 7171.8554 8177.6087 12289.2353 9141.7187 283472098 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 54838.8691 11430.8451 35294.776 6201.9443 61033.2379 6976.7591 34566.1155 12303.6935 10019.9769 28643.0543 87947.6898 427581.3158 15791.09 25025.0117 19281.6397 16866.4744 16866.4744 14017.1553 28737.972 20437.6609 30963.3875 28803.5762 21741.8868 16459.721 17016.8693 34692.6027 64141.1182 69172.633 28680.863 25404.1819 8442.6282 17629.4749 28307.9137 17219.7802 22488.1918 145317951 dmsa Organic Remediation Others NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1010975.9769 8626.2668 15155.0946 9320.3469 5826.3981 9183.2858 6362.0822 2572.1159 4529.3832 11652.0718 3846.9979 91996.6537 69591.6176 11400.6146 16125.178 5375.5126 5375.5126 3090.1207 8794.3816 7013.4366 5499.2389 10193.0082 120361.8526 6399.5958 6506.3546 15248.2584 11720.2577 16717.9008 11639.1427 8155.9353 10834.7765 5771.7174 7417.396 3043.5082 14777.1517 355373223 terc Metal Homeostasis Tellurium Detoxification Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 1170541.0614 9383.1261 11946.6715 2886.2973 2886.2973 2997.6746 9050.4753 9577.486 4261.2205 94971855 pcag Organic Remediation Aromatics Other aromatics Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 115736.5187 18067.8927 71413.1772 43939.9296 452124.3225 54650.9912 51538.8634 98242.8346 111889.8674 46505.5359 78117.533 96514.0597 1957012.7388 74616.1402 88819.2405 316756.061 85673.8638 85673.8638 47206.4124 117807.6401 43291.2807 78452.4618 136916.3049 73903.3207 43656.4739 156874.3412 105677.8627 37034.2446 143006.697 109728.4479 156505.8361 47819.6138 65184.645 91053.9457 60998.7417 48158.8968 358010123 alkk Organic Remediation Others NA Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3834.7318 4359.8439 1913.2795 2525.3549 3470.6122 4647.6543 3871.9989 3121.1793 3121.1793 10520.8674 4928.0828 9762.8272 4161.0394 5817.0663 8474.755 4246.1818 6167.8112 1827.7968 3085.3583 4827.9467 2577.4641 4747.8471 111024870 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 567532.5478 34800.6941 255008.2639 1718756.0501 353233.6243 514624.2827 217716.5036 249709.1757 238607.249 275487.126 378172.1246 267909.4347 240785.7756 703135.3304 251640.2961 396656.2799 334132.3251 334132.3251 193422.3016 294647.8586 180045.7117 586694.615 730582.7737 349904.214 194850.2257 240451.4142 307450.5284 183499.2924 794659.6681 373685.6585 294551.7337 147505.761 292182.3746 295004.4904 196764.559 635045.1258 317170091 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 412251.2405 243151.6275 199676.0981 46634.9594 492987.0058 36404.3866 65576.4056 295937.5136 423996.0062 121389.7648 150260.3148 197629.0382 2199617.8814 157707.2685 243866.9431 509236.7311 238923.9594 238923.9594 136768.7719 269664.6583 111951.5717 271064.1586 446680.2864 297283.0823 195266.7813 161743.2333 237385.7462 186239.9686 597533.2321 232770.0671 291462.8528 92807.6659 184264.3332 138215.9757 91065.3578 437167.3885 257077000 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 4716.5882 9701.0104 3776.414 3075.9802 3657.437 4955.5256 4845.426 86098.6322 5401.5963 3603.752 2566.8842 2566.8842 4455.6205 20113.8532 6389.3923 3948.4196 6152.6628 2163.2568 3088.6431 6607.1995 3353.2276 36092.1694 7733.0067 7558.8324 3765.0608 4911.069 4473.9211 4177.6556 8436.6471 83646392 phytase Phosphorus Phytic acid hydrolysis NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 7106.8701 17201.8641 50790.5991 2559.9828 2400.5184 2593.7941 3657.2307 11353.2126 2484.6994 100472.9388 6148.0602 8782.2629 3927.4739 4059.5381 4059.5381 5886.9076 12717.7821 5901.638 4882.9262 5104.3452 4978.2889 81849.3975 3596.0117 10970.7716 2608.8405 18456.597 6442.4736 9296.1651 3089.4715 5536.0609 5449.4283 2543.9337 7950.2348 83653427 atza Organic Remediation Herbicides related compound NA Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 28235.6815 4335.4779 10485.5353 3939.3255 7145.8338 59507.782 10092.9245 5768.0867 170166.2108 6526.5093 7076.0733 5824.9159 4389.7724 4389.7724 7173.2512 14926.1779 6299.3122 8666.6232 39875.8647 7441.4992 5503.1241 11385.8817 12377.8346 6668.3559 23129.4665 54274.7812 12615.4727 4170.0643 6392.389 10390.714 7980.2125 9091.3685 74053703 one_ring_23diox Organic Remediation Aromatics Other aromatics Arthrobacter sp. 3YC3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 21225.9288 415958.78145 15146.016 14689.3053 5044.26945 9689.9647 6925.46805 14864.53515 81236.54635 14150.90915 311229.14475 40462.86575 24633.66405 34618.33855 27257.6834 27257.6834 7202.84405 32824.637 15621.35885 36642.8134 18610.82695 7451.56985 8160.3629 11261.0016 37873.33095 11911.9534 28228.73825 22998.64345 22048.4575 13434.11615 14003.3765 66408.9807 11550.0678 10409.28365 319764947 badi Organic Remediation Aromatics Aromatic carboxylic acid Alicycliphilus denitrificans BC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 13729.0999 11455.7715 17531.1519 39686.0662 61399.575 24724.8679 3398.727 17562.6385 17213.4278 27453.244 222302.3898 26211.6088 160926.225 19476.3089 51287.7798 51287.7798 10201.2234 82203.3695 17145.1278 161915.6338 189884.9538 2339025.3476 20207.1047 13974.0092 25498.989 69080.1709 62722.7827 35159.1756 25082.4256 68757.6881 33241.8916 21455.1141 10258.5276 46307.2808 22449969 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6288.7697 2080.7395 3885.1786 4526.8006 3663.1055 5426.9684 8953.5322 7520.6917 5148.3097 11011.6608 8498.9272 5457.813 4699.5842 12185.4482 2795.9712 13786.8873 6708.1787 9583.7855 3006.0885 4161.8577 6561.0294 4064.4529 7767.9553 29652646 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19449.2576 16713.7007 10343.403 8972.9087 10619.1716 8805.7119 19060.0139 24575.3953 16566.8391 367295.7262 21175.0037 24692.3197 36341.0884 20873.7478 20873.7478 8107.8951 32181.5632 15682.1241 20301.8216 25128.7872 19866.1018 17779.5568 10751.7336 18845.0092 15073.3106 42267.7208 20366.3434 23741.3802 8722.4924 13396.2829 12173.8855 10315.5733 46270.2277 347664271 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 13655.712 10934.292 9803.1816 11101.683 7193.2826 11066.2128 5184.5181 9063.9827 11651.492 6892.4236 341977.4923 22453.4552 11452.0405 13817.0392 6232.633 6232.633 8408.7854 22115.5788 16147.6667 12167.1647 18932.7231 21108.3999 6734.8182 8751.7323 39118.4794 5127.6719 28512.5333 12713.9648 19084.1906 7941.2519 10908.5436 11265.9748 5441.6713 13024.8023 381373860 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 5565.3818 10566.9941 22102.3932 7001.9831 3796.3266 5432.9457 4357.0293 6436.8376 10374.8803 134275.3624 8277.3747 10268.0712 10139.5483 4568.0103 4568.0103 5464.5717 8208.2388 5635.5231 5867.4837 5372.7637 6626.323 3065.419 4935.9842 15956.4894 3470.77 15550.7818 16129.9393 16758.2649 4814.5729 7919.907 5465.3463 5605.482 6524.2738 133920180 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22455.6056 31284.9441 5877.5154 15487.2099 10913.8817 22437.4505 22348.4537 14761.2752 16618.4 21723.5717 329458.446 8338.32 25653.018 26378.3432 11926.277 11926.277 9792.0081 27759.3961 13550.7681 27060.6653 70590.988 28022.826 7257.6279 12182.9404 17820.1824 25083.6999 44145.05 47909.3143 21715.9051 10106.0918 12267.1455 28551.7342 26184.2701 27070.4628 154155750 chnc Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 4255.188 9764.0983 15358.7065 8752.6136 4399.341 18224.5268 10721.5931 61386.0916 3465.9599 3196.0803 3196.0803 3326.3376 7457.9366 9377.7066 3018.042 2620.0493 8865.37 3050.1876 3310.1227 6607.712 3787.8701 2473.167 6835.922 2941.1603 375143401 xylanase Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 8802.8008 6273.8303 17199.9198 24813.0774 18436.3278 13277.2995 7566.4495 9200.0852 21991.4313 6358.2932 338876.1382 9587.9532 30294.4514 10795.2969 8046.6739 8046.6739 7786.1821 21279.9202 16379.987 16677.5182 16692.4591 14140.6999 7293.3683 6441.1191 17501.9044 25955.5605 38366.548 22438.2836 18747.7521 8726.1031 12438.4459 7949.0356 8075.9087 20556.6248 163869160 tktA Carbon Cycling Carbon fixation Calvin cycle Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 5236.5257 2837.9173 2560.794 1894.5851 3379.4718 94618.7139 4897.3713 6953.7117 7238.5087 6673.5462 4177.1 2667.3194 9628.9404 5984.1876 6860.2573 3390.6205 5057.977 3945.3208 4271.0482 5331.1203 229610701 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23008.4921 17819.8765 6850.9438 23874.3459 17307.8906 13167.0962 7242.9513 24533.86 41627.5418 6051.2886 101642.395 147290.7395 21435.2978 9156.9582 11359.0422 11359.0422 8087.7937 16455.8157 11158.5459 13314.7383 15076.8575 6574.0118 20699.2917 12164.6436 14693.2711 17024.506 22674.7634 16283.4229 15010.8145 3118.607 11083.3499 33184.8141 6669.5245 9826.7312 239626950 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 21073.255 247079.2935 4880.7534 14961.1091 4433.2474 14116.9877 9124.0176 13615.1045 32131.9645 18786.949 320021.5903 21154.2126 19123.8297 27488.2924 18525.3181 18525.3181 96083.281 26065.6067 10690.3848 48329.005 26399.2344 6614.8274 10451.7196 26103.3757 50184.3734 11093.0805 55350.1483 18130.5869 21055.7341 5637.8175 27751.3978 32648.8328 8245.0452 26054.7473 70930941 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5183.947 5923.7289 14852.3542 2087.7753 4670.5604 15736.3899 7580.9488 99404.884 6039.0459 4397.6515 7885.8868 5560.4511 5560.4511 3386.5431 11400.287 6888.4868 6318.6184 13265.6859 5306.5639 3229.879 3994.2852 36690.7361 7090.3072 12655.4094 3846.6158 6221.5693 4726.6112 11589.065 19993.9829 4369.3991 8217.7569 296020516 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 228798.9506 74368.3771 110638.6527 454364.7001 891547.5971 55338.9934 118428.0716 123338.8889 76319.1913 124032.0393 127113.3386 64899.7532 3711908.3761 151765.0062 151932.9026 127960.4772 111641.0408 111641.0408 84010.146 198773.1446 132201.5546 167102.6066 157649.2494 241122.8009 87697.622 58221.621 155743.7597 55154.8977 257081.1271 67145.6193 152651.6516 81645.3291 87981.3321 105315.2183 73944.0187 183191.3259 349787319 xyla Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 31072.7706 12709.8265 14268.3685 8401.8024 4976.626 5099.5482 6793.184 7544.8885 6919.8949 166679.8791 16423.4619 7746.5551 8331.8812 6022.9807 6022.9807 8073.154 18699.5112 9256.9797 12672.0034 8787.5674 12883.2138 6246.2468 9850.5015 12722.9754 7972.433 16716.9409 10248.77 11867.4453 5317.8388 7368.2136 5704.7226 5689.3806 7892.9014 320013047 vgb Virulence Antibiotic resistance Degradation Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 44937.5196 94135.3014 23459.273 205831.2843 36446.753 75283.0153 79552.3149 21835.8208 64333.7845 52634.095 49953.2833 795101.3136 40664.7933 58855.0835 102427.0974 75825.968 75825.968 45797.4491 103437.57 27398.8133 42871.3752 39697.1402 13937.4192 11215.5173 29290.615 73651.6458 47389.5223 93091.2746 54727.3837 68760.1453 83807.3236 82204.169 43330.4385 59259.1098 54926.3412 374326666 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 17656.179 5904.0185 22757.8604 4543.9137 48409.212 16000.7271 9742.941 9423.6923 31102.0319 91914.5944 15503.3204 9199.7994 28493.6306 13876.4596 13876.4596 10400.8562 16821.3857 17276.1356 7033.8279 30983.9937 24070.0354 25424.7601 11263.2806 11550.1701 13206.9014 20997.6232 15956.0327 15552.4257 18430.7586 41659.0923 12284.1697 26678.0379 9786.3867 336406486 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 1_1_30 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4498.4129 5813.7852 42791.8201 7864.5771 4628.7316 2776.7361 7676.3169 2839.7554 83365.51 4622.6302 18599.6469 5659.3058 3494.8282 3494.8282 3351.1289 4509.0787 4748.2735 31763.0911 4865.3503 3280.9892 6594.0578 2852.3402 10555.4359 5664.566 8196.0568 2879.5302 3725.6399 48415.031 5159.4171 116222549 pcag Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 14254.0634 6928.4545 2634.2821 84760.6509 3389.4935 5121.9193 7029.3776 4121.984 106458.0751 8639.6033 6194.0376 7014.6645 3051.9385 3051.9385 6355.5535 13364.1002 8462.698 8256.4889 7896.1816 5049.9643 4939.6537 4456.6119 8480.7125 3500.657 26383.5744 10355.6738 8995.1175 2474.9899 4935.0024 4710.8873 4831.9333 21138.702 253688567 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 13927.6356 6462.1106 8050.1338 4332.6467 3980.7218 13681.326 32293.3546 7462.1713 5655.0177 185222.0389 11783.0897 7166.5971 5846.5594 4536.2581 4536.2581 5328.6234 13529.578 9707.6403 10032.8352 6355.1979 8128.0221 4620.7705 7559.6947 11574.5513 3658.0241 34688.0374 6075.0073 10850.2339 2616.587 9153.7601 8427.2747 7428.6432 25044.8469 291197154 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6636.8794 4259.8596 4278.3394 4315.8209 15501.6008 2835.8095 71206.8843 4326.951 5474.8606 3262.3358 3262.3358 130044.9095 9878.3712 13517.8607 4717.8777 5414.0544 4274.8514 16584.0809 2876.5626 25649.754 10050.8127 15835.7008 2525.641 4002.0071 17920.5114 7436.5332 319438335 amyA Carbon Cycling Carbon degradation Starch Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 20561.542 10180.8382 22168.2238 26995.1896 9761.5621 8042.9577 5684.8705 10664.8582 19629.4323 5700.1511 263694.1432 14699.1556 13106.3611 12455.2074 5753.4646 5753.4646 12536.6614 24140.8742 14687.2751 16532.7826 22397.61 32938.2576 8400.0546 7389.1995 18856.779 7099.1322 29838.1219 19005.0884 19978.3796 7066.4789 11040.6378 8897.7981 12168.2773 96102.4382 62433256 cara Organic Remediation Aromatics Heterocyclic aromatics Nocardioides sp. IC177 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 102327.4337 40689.9537 24709.333 48539.602 14514.8896 13766.2752 14327.9814 8992.8046 14374.3707 65979.0309 13383.4844 402947.9294 30727.1448 42395.7854 14839.0419 26384.9847 26384.9847 12634.4066 54654.9623 19301.9064 15327.48 31396.3967 21491.5445 38378.1477 19389.3697 33302.3645 18417.0371 172910.5247 19853.7252 38325.4356 19401.1169 21786.6504 19649.1943 13288.9546 71352.8316 338737267 gdh Nitrogen Ammonification NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5584.8255 6632.1871 26120.5724 3906.3263 3375.2321 11280.5819 7834.2939 4985.0567 26415.2154 6048.8364 6048.8364 3466.9752 4798.8908 5482.2999 2910.6513 39180.7559 7919.2422 2335.4208 14448.3048 9113.11 13169.3352 9748.7021 6553.0431 4913.6115 6551.1299 11187.6759 242222293 pme_Cdeg Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 39012.0225 6156.4757 18532.7316 7253.5066 36730.2734 5922.1831 106982.3073 5709.754 13376.2908 310102.3867 18429.1769 10069.884 50237.1925 19485.802 19485.802 75392.1017 25319.0504 8782.6694 5569.6604 19413.063 9269.9989 4773.513 10099.4143 43448.1611 8881.4295 43252.6224 7717.4003 10932.9722 10096.9955 13257.1914 8213.9858 75923.6689 11484.7079 261855030 tktA Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 60942.9129 83942.5773 9916.4483 17672.7081 20250.9085 13097.9867 16714.6195 10528.0308 13545.8572 15074.9187 171780.0543 112733.7753 59628.5958 85060.2123 28670.5355 28670.5355 7553.5632 25930.8506 16574.2628 9013.8766 41235.5983 94498.1671 5892.9905 15606.1027 16074.7114 104787.1908 48708.1439 15284.0058 40240.1593 6386.9974 10126.1863 24177.9338 13716.9109 5463.7728 14026766 pcag Organic Remediation Aromatics Other aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 11436.7161 21262.9718 62102.4484 10278.1892 3947.8057 6431.0623 3255.4058 9278.686 6570.3711 61691.5128 8832.3636 12703.5633 23621.5904 6203.025 6203.025 4774.2892 15750.6286 6632.4944 58305.7532 13526.9885 6251.5051 8580.8399 4693.3418 7694.5111 12093.8113 16580.7244 5946.5945 10261.9555 8535.7361 10464.5864 8142.7134 3043.9647 13795.485 118685870 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 10207.812 84401.0462 7456.1164 6914.7921 7119.789 6849.0796 8449.7226 4576.6877 10151.1042 11096.0746 4523.0878 210003.2555 13215.8832 15871.0913 7689.2067 6324.1454 6324.1454 6846.7233 21123.0927 10207.5307 16795.9188 15393.4824 13344.1804 4689.4068 5468.1543 9947.757 7949.5723 18568.2935 13587.6053 6608.947 6254.006 7935.2462 6632.7949 10538.2401 35212122 nira Nitrogen Assimilatory N reduction NA Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 49561.5469 10887.0293 27559.8094 42392.4747 42212.3005 17777.2482 28134.1791 28086.2445 16954.0558 35786.997 37625.1298 22272.2446 831542.5492 47601.3864 37276.4893 43991.3297 40368.3879 40368.3879 22964.384 44833.9819 28302.5018 31837.4308 63734.7171 46961.6446 27841.3125 23419.6904 47577.9242 16971.6867 70648.7691 41800.3085 44609.2075 23034.8453 30090.2374 26660.4572 23195.2709 128769.7431 159181884 TIM Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 42523.9335 898779.8576 7294.6911 28344.3968 7783.4019 104452.377 12426.4893 10758.771 12972.8349 18811.1023 45271.6869 746427.1833 26291.3336 58996.8535 43957.6383 62659.8704 62659.8704 44542.2336 78855.1146 17178.0243 37398.9358 54097.667 16033.4353 33102.6468 84756.5934 25074.1139 19319.9242 188245.566 32716.622 58788.0709 11194.6667 48458.5477 37282.1138 23494.2341 61654.6209 195541992 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium 1114 superkingdom:Bacteria; 12125.9464 12134.5776 109227.7493 58800.3552 5196.9283 36636.4871 3211.4934 9600.3514 10877.9575 8996.1815 221363.833 14598.0972 16243.8706 7899.8813 10416.5037 10416.5037 9310.739 28032.8182 9904.7045 16051.2935 22840.8389 21303.5433 5732.8643 8381.2862 21161.0241 8293.9408 39855.5255 15185.4755 22343.083 6831.3298 28127.0268 13216.1965 5767.7716 22436.0445 315047608 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 38060.3104 6073.2387 131123.101 19629.9048 4290.4828 9385.1602 8109.1498 11025.4461 11141.5589 7954.4377 167075.6714 11603.3965 12100.5503 20636.581 6852.3856 6852.3856 7082.0401 19440.2922 14098.2162 5859.7082 9691.3836 22737.5786 6802.3547 14822.0386 22059.1213 5955.4707 83951.8414 33333.384 13139.7926 10209.6375 5836.6692 11886.9867 4570.7533 7464.7493 352090373 mer Metal Homeostasis Mercury Detoxification Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 6907.7015 14667.6178 16984.1101 25177.8054 8281.7894 4402.8062 37705.2927 8034.9264 8033.6386 133237.8745 6614.4024 5846.2321 10386.771 12701.5504 12701.5504 7905.633 9085.5695 4677.6101 6216.6944 10353.2561 11689.9953 4999.9006 8273.049 15745.0305 6524.409 37034.3116 15560.6619 10348.3033 3097.7335 9818.2668 7068.2025 37144.072 15604.4504 283812458 chitinase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7580.2091 14974.8274 22712.8933 48582.5174 5687.4957 6136.0337 5071.9813 7243.3009 18437.7914 7722.1689 237809.9272 9538.5216 6920.1686 8637.2965 4026.6156 4026.6156 6561.966 16731.7027 19928.6998 7315.7644 17799.6867 11361.4744 12765.7386 6639.8721 26197.2944 7781.6267 27124.5131 14374.2857 17263.03 8369.7759 17793.3524 10221.3117 7590.5776 17937.6578 212686911 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 19927.2374 20289.845 27434.5948 16811.4069 5421.9138 18567.2892 12543.9321 9026.7329 16107.0427 33863.4135 10615.8844 336770.5106 24313.4449 17734.6051 17882.9125 10889.8016 10889.8016 11978.2038 25626.4901 20195.1258 32766.5387 22964.5292 22211.1116 21343.749 12996.295 23596.6235 11081.49 43029.929 19862.455 24307.8722 11326.8361 11661.1597 13408.7323 14081.4546 28391.3519 197621296 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 96773.5493 86771.0102 1700905.0366 124094.8467 38706.66 55219.8233 77807.2927 179710.6285 63244.5652 83287.7691 91047.1631 2653370.3897 136004.5389 85542.7307 127388.6549 141675.0317 141675.0317 71138.7257 95031.5602 494676.4947 67179.9461 144675.7273 301626.5274 42053.933 71140.1016 69706.0074 79508.8532 167640.2168 762439.1641 98234.1973 178428.4939 80906.7452 150658.377 58536.6632 89198.0511 291069809 amyA Carbon Cycling Carbon degradation Starch Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 70616.4029 132947.3359 34259.1238 22578.8876 10427.4801 6577.1166 52326.3553 54742.4105 37861.3636 65517.4623 55764.1747 33162.0352 681307.4136 67136.2171 43005.5987 56554.5788 98915.5157 98915.5157 17280.8681 71283.8036 38029.1625 55604.4212 38792.2457 44753.5979 35512.8202 57467.8838 31335.2978 37622.1257 90676.4326 47039.1952 42572.8593 27188.2496 29470.9098 60428.3698 48123.6803 30574.9991 229593278 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 41861.5563 14009.2516 18256.7255 23469.0004 16151.8031 11784.0279 100293.9485 18866.0783 54159.2023 40316.7794 20507.7958 783112.6524 36421.6339 28277.2436 23077.2516 28000.1629 28000.1629 18733.4793 73101.2518 28469.1581 48275.3828 77661.3584 24102.6497 23656.6699 17974.3956 35110.7594 16314.0528 47088.015 50582.077 34449.356 12359.2441 20733.2452 24979.8715 18030.4919 38904.4325 145216424 urec Nitrogen Ammonification NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8401.4289 19019.4165 6913.9272 23218.5347 2928.3627 6360.23 5552.431 5995.4965 8112.2522 5836.7019 83571.8444 17824.9299 11219.4813 7619.2904 6357.9583 6357.9583 11393.4592 10679.0083 4275.5052 6049.8566 4516.5321 8923.0027 2983.6886 5624.7979 25102.5202 6235.7334 12576.4905 70014.4692 7708.8969 4174.9101 7383.0286 7720.3574 3741.8784 327183198 amyA Carbon Cycling Carbon degradation Starch Lactobacillus amylovorus GRL1118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylovorus; 14167.9829 19005.9801 9793.1135 23201.0337 26840.3358 7971.2071 9848.9079 5649.6163 12729.513 20815.2273 7719.6907 211114.5133 16543.8972 12098.6501 12893.4496 15438.2878 15438.2878 9539.8247 21619.4963 12899.03 16125.5868 14968.4101 27172.7448 6470.6275 8498.3737 19170.6481 7005.6783 29382.4693 11311.49 17916.9393 21667.6873 10267.9547 12274.9397 6909.6947 17961.1742 162454831 urec Nitrogen Ammonification NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 5355.8954 7903.5437 17190.9633 6012.3793 8905.2849 2663.1345 23287.6281 5742.2478 11438.5171 101089.2876 9216.3392 9987.3072 11236.399 11842.9062 11842.9062 16588.3338 25093.2281 7975.9886 6662.4827 6196.095 13201.0614 8413.1345 6640.7067 49095.8076 9800.6868 55779.4015 12671.4806 14490.0386 6172.7366 9306.8069 8927.0285 32420.0575 10742.9574 287907 nirk Nitrogen Denitrification NA Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 10249.2449 12201.6105 9524.3034 23680.9572 5132.6972 3236.3681 7414.2979 10929.3341 9791.8943 11321.7232 22337.7402 341724.6476 12808.2722 10492.5253 22036.1472 11214.0251 11214.0251 7781.877 15910.9825 9379.6602 19809.2614 41292.9028 15747.5205 5442.6108 9154.0589 24358.7684 6982.4198 153329.9301 15715.6123 22443.5631 8383.0718 34270.9882 33786.4525 10127.8784 21174.1245 391321075 cueo Metal Homeostasis Copper Detoxification Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 10128.3504 5304.4049 8074.364 41001.7026 5161.131 6684.2818 67235.1853 19715.7154 87288.2315 24734.5878 7923.9685 12407.1845 52206.2748 52206.2748 6071.7715 10466.0379 7180.3383 139636.2216 19979.6327 8812.6269 7597.0842 7842.3626 15378.0482 53204.6121 70523.0127 15470.4363 10804.3711 62819.0879 17023.1684 11370.2131 9369.8269 5192.1997 312221667 axe Carbon Cycling Carbon degradation Cellulose Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 11212.9317 4549.9271 12906.8002 6962.3561 5762.3969 2143.2354 82776.9689 14650.2465 7991.4393 142679.4203 7425.7506 40558.9946 9733.1715 7753.1537 7753.1537 12587.0048 11676.6956 4435.713 5379.7233 89234.5397 7294.6667 6014.8076 22822.3901 16685.1344 122808.4086 14593.7365 16410.9419 4737.728 8480.3351 68886.6476 19928.2238 15385.3554 80973474 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 4156.7426 4494.1372 3213.7777 3669.734 4941.0578 4387.1824 2072.5234 2072.5234 9407.2317 4161.3533 28839.3765 5309.3764 4865.9468 7815.0361 2443.5917 3323.9137 355353779 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21857.8973 15958.3172 20777.4376 34748.0223 7147.6482 46238.8294 31969.0029 10086.3513 21114.7414 19754.1628 15259.7892 513977.836 20740.8242 25346.6544 28141.8907 16648.6418 16648.6418 14547.7459 31704.9872 23674.7789 23033.6156 33727.0616 50653.0067 10576.7253 13543.9478 28973.3545 9495.3357 76441.8045 33917.8704 29841.5965 10898.623 15635.2412 16748.6192 11160.9296 42154.2581 315043422 tfth Organic Remediation Aromatics Chlorinated aromatics Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 4152.3971 92111140 dsrB Sulfur sulfite reduction NA Desulfomicrobium thermophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 19437.9275 7263.8015 6246.975 14980.7248 7335.6346 6765.1417 6008.1715 12431.7577 9836.4388 14539.2618 8090.6707 180689.1563 17754.9185 8517.9745 11819.1187 12329.0196 12329.0196 16284.5432 23040.611 10167.8348 6747.1457 15644.6326 8696.1038 4791.3274 9282.424 15987.2512 25590.2198 117622.4782 27802.267 20122.668 8059.6378 11898.7129 11238.1383 9031.1756 13432.1216 261193797 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 5880.3995 5982.6667 22295.4082 4647.6397 3474.2482 2410.9252 6686.13 7510.4857 2398.593 90645.3185 5147.3575 5278.7826 6114.1633 4174.6508 4174.6508 5375.2732 20636.9237 7039.061 8365.7939 4414.2791 6769.3969 3653.9732 3652.9204 9812.0016 10332.2858 18172.8094 7018.7563 8932.789 3843.5327 6579.047 6450.2204 86113.0338 14678.5673 260652335 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 115190.429 16389.7632 9384.4577 7543.3646 21143.8576 10443.7486 5094.3057 6344.4443 5629.2141 256276.194 5801.1592 6892.5577 17440.7848 6326.76 6326.76 6193.6028 19480.0542 32281.2108 7464.4965 14436.318 5276.9301 3339.1244 4334.2884 8511.9498 6053.8744 14514.2473 11524.6878 28993.1842 8919.2525 8464.4675 13321.6064 4669.2523 10273.2162 219741506 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 22216.4633 19550.3114 31466.1533 12503.3876 4365.7928 6849.5534 5805.8338 4899.5294 24141.6521 8159.5734 8159.5734 13596.1329 3828.5372 16548.8264 15275.8309 6049.2776 7558.9163 4835.9744 70655.3455 9611.7402 6016.9657 2441.1046 4355.614 27517.8434 3232.5542 302537591 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 205863.3153 176430.37 96049.7117 99302.1143 35014.9727 59030.8973 101973.9393 106029.7573 175469.397 233207.52 67047.7624 3277871.8985 108646.9967 183607.7083 177978.1526 160471.1268 160471.1268 71579.595 154182.1069 85410.6119 106346.0313 187307.1109 167588.9116 91960.1545 48562.5159 194127.8211 180220.7406 223263.2961 140276.7834 134156.9941 91743.1648 142114.6718 141827.7564 67728.8915 354432.1987 154159741 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 4867.2556 3894.3277 3682.8699 2764.8876 4602.382 4228.2447 7136.7749 6365.1108 26725.7947 4734.6725 5752.0683 3057.6494 15024.5152 4121.2639 5180.9496 1873.2866 6607.8547 5339.427 288349213 limeh Carbon Cycling Carbon degradation Terpenes Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4047.4791 9308.841 2592.2345 5397.3934 2533.7863 4538.8069 12687.8635 11048.4693 11048.4693 4913.6972 10339.6429 3709.0113 8562.2721 2861.2462 7193.1038 24117.7324 8911.0467 9758.7884 3652.6315 9520.1914 1954.3813 10448.571 379057283 Sir Sulfur sulfite reduction NA Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 11517.1935 2130.2331 6673.2867 5084.4307 2461.8701 2461.8701 4072.1714 10295.8285 1942.8775 4954.8436 206687309 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 6708.0347 8819.696 92451.9788 7700.227 50781.2011 6289.2817 11076.3477 10150.7253 319661.3265 12712.6969 7617.8416 24811.3366 12608.4889 12608.4889 5128.2806 27969.7931 10277.6517 9933.2597 29634.0804 5997.6916 9871.3938 34182.8663 64280.8672 21938.9192 49058.6246 35304.3664 3120.6005 9461.8388 10048.4273 5890.6453 6028.9037 112361523 fcbb Organic Remediation Aromatics Chlorinated aromatics consortium cosmid clone pGZ1 superkingdom:Bacteria; 12130.1431 5583.9787 7486.1674 2376.5586 5924.8172 10072.8459 4560.7428 232588.1722 6118.0708 9873.6724 4609.1415 13641.039 10755.9824 5013.4609 9318.7833 9262.8411 21314.873 3689.4696 8146.3756 4652.4544 20388.9374 10124.3774 10017.039 3060.2295 4603.5887 7320.9522 4118.7212 8580.4276 343779079 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas maltophilia JV3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 10591.8541 17158.2435 40724.4528 8906.3745 11940.8306 8236.7538 15893.6543 5539.4676 17143.696 15926.2192 13973.2724 338087.4952 801386.6152 21441.6365 20077.9682 12036.6225 12036.6225 8855.6473 33355.4836 10979.9834 11689.3897 20107.7874 14983.7857 13808.3209 14423.443 33772.2998 10882.5586 24108.2014 29757.5332 22934.2115 7976.1624 19963.5049 12327.6412 12196.8509 16005.1425 33348784 amyA Carbon Cycling Carbon degradation Starch Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 29747.9762 10321.6924 1842.6712 14474.6958 5038.7631 4622.042 2033.3544 2033.3544 30618.0512 19231.3617 6481.131 14814.2058 5203.2215 13047.6226 7503.1866 2826.9611 2291.9334 13683.126 5039.7861 7946.558 141696.9286 2537.5495 3803.7108 14407.0602 53436.3107 260937557 atzb Organic Remediation Herbicides related compound NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 30090.1638 20674.5044 86526.2831 36880.5837 24171.9204 9830.9502 40972.3512 42732.4776 25951.602 29533.4888 37214.2934 34119.2688 1127009.4634 47153.9762 28349.0284 27295.8431 12509.9142 12509.9142 17421.1183 28413.0403 21110.0738 85234.478 28665.1032 44500.0364 16694.2935 12652.104 50899.2258 17724.7076 119341.1907 11826.5091 32861.7958 19932.4946 19487.1959 36923.6219 14892.8075 41201.0271 153889031 dehh109 Organic Remediation Chlorinated solvents NA Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 368240.9666 64246.6802 11397.1564 26808.5166 78899.6182 24984.6409 43119.511 14660.7955 47604.1582 48994.2848 711227.5628 36903.1745 58343.1369 61852.2332 26814.9946 26814.9946 31556.6101 79900.1432 38687.7522 164105.1937 125922.4786 100831.2182 24434.5905 26662.0027 21981.7461 26124.6427 135816.9996 186019.5773 60041.9284 74172.7423 76730.4025 38722.7299 47011.2469 258598.3313 302413179 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 4240.8086 33692.2121 27140.619 4026.1639 2948.5635 6400.4154 6941.3826 3563.4634 67525861 amyA Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 17382.6909 10410.7494 15798.5082 11547.7454 14596.7044 10011.914 9199.4334 13451.6677 18895.4831 9017.0792 379776.1128 13752.8326 30088.4895 11706.9635 9067.2977 9067.2977 10157.082 25061.9186 21299.0982 30885.5017 20831.9029 34109.175 9682.1216 7013.8253 18475.5578 11149.5808 44618.6392 26989.744 24415.1111 8980.6275 12228.5369 10838.60585 9494.7482 30202.8665 113876349 xylanase Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 4321.8564 13319.7078 8264.4281 4072.5168 3278.3483 3952.8146 5285.5607 13452.4341 68654.8977 8772.592 4228.0719 6126.0748 9019.4783 9019.4783 6573.7919 17022.9684 5670.7868 7475.7258 9851.6011 15609.3265 4910.8813 13623.8814 2581.5045 10810.2512 7104.1196 15485.4838 6358.0331 4605.296 4243.8826 2984.4437 66850793 arsc Metal Homeostasis Arsenic Detoxification Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 6080.4349 4125.6965 3352.9059 2979.2236 2266.7246 52973.196 3946.6951 5100.5902 5100.5902 4005.0568 10197.1562 4293.2483 4346.4144 19637.9508 2516.7123 2642.855 6477.6507 2371.4834 7876.2431 7088.2534 2359.2966 3128.7118 3992.8537 2512.1073 5675.8944 151302289 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 4299.9157 2818.5919 2273.2792 3982.4641 11289.7584 3369.6717 6221.9005 4305.0708 6040.3631 8616.1895 5069.8686 114425.1317 8696.1664 4023.3143 7931.8763 302540043 cdh Carbon Cycling Carbon degradation Terpenes Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 44391.8156 26477.5786 36588.8872 28839.085 7791.6411 23860.3271 31777.234 43196.087 25198.057 45575.1666 28876.3214 554831.2914 34770.5059 26893.6183 25397.1358 41024.6543 41024.6543 20312.066 49962.5118 62236.486 37499.3883 80393.005 44262.4786 17435.4831 18198.2938 34775.3334 18812.5106 64787.7687 17410.2872 41477.3334 17557.0433 25055.0866 23626.6882 18367.1645 40727.0884 373880811 alkb Organic Remediation Other Hydrocarbons NA Nocardia sp. MS259f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 43939.3254 40186.6872 7618.3086 9219.7292 49241.3241 4168.0013 6072.9568 9684.5797 6714.7773 65930.5222 3735.5743 7402.26 17973.9548 5948.5976 5948.5976 3742.645 13637.2584 7195.6489 8842.5917 8008.807 11322.3233 5487.2266 5459.1212 9533.6436 6268.7507 18292.5488 9350.3818 7303.1044 3461.4807 5164.5302 5401.6861 25892.7556 18167.7517 345298179 arylest Organic Remediation Aromatics Other aromatics Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 13840.6754 461803.9802 4571.716 7912.1532 7415.8059 5170.8119 3989.2413 16325.6878 9683.4576 9636.2073 4258.183 13938.323 5467.8562 5467.8562 14512.7224 52697.3704 4624.7954 4444.5904 8410.2399 19504.2622 8098.2754 5539.9684 22928.3948 9220.2666 11875.1212 4689.1109 332670361 terc Metal Homeostasis Tellurium Detoxification Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 99020.0072 18711.2184 182870.6428 39097.8683 55882.3771 16012.887 46243.6517 126916.1162 135952.4082 52791.9966 48086.3333 50003.2596 1266467.7175 58398.3714 125619.5612 64794.5916 41488.1777 41488.1777 35385.0435 67248.0928 59456.6943 67259.3281 84819.631 68169.0532 69589.5676 59439.359 71760.0127 66740.5576 233950.4487 49771.5653 73787.2211 105006.0333 46202.9281 56494.5125 111732.8183 166558.6922 89885720 chitinase Carbon Cycling Carbon degradation Chitin Vibrio proteolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 30238.1831 10081.1376 9437.942 6201.0405 4837.3986 3864.2832 2024.382 8082.3188 7798.6474 4478.0983 2230855.8666 7796.6627 8604.1103 6292.2123 10545.6859 10545.6859 5353.1562 14091.6806 7996.5102 6544.0689 9516.3127 8013.3843 2643.7552 4283.1689 16596.3783 5657.874 16946.2865 10058.2652 12203.5443 4766.5145 5817.2263 6865.0113 3401.3469 4890.1773 296393796 amyA Carbon Cycling Carbon degradation Starch Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 57481.3148 10885.6583 14322.4372 28626.79 7334.1625 8957.8183 11153.566 8834.575 11298.6357 15265.4218 8858.7731 229652.7446 13937.8832 17478.7087 16075.6409 18832.0269 18832.0269 12965.0322 25057.7848 19121.6576 14453.937 13370.6402 25525.1382 13130.6543 6516.5522 24181.9619 6602.1291 33857.228 18727.5744 23486.3694 10266.8887 11502.1892 10174.8792 12262.1388 35262.1499 343774892 ppx Phosphorus Polyphosphate degradation NA Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 13191.612 15004.7135 6572.2782 29479.1848 7379.023 8895.1971 44343.4579 24717.66 15191.9893 20563.1257 10005.5802 295210.3798 16294.8326 20777.7566 11695.8574 12919.8381 12919.8381 9305.0795 50587.9568 15214.5768 6630.6571 19889.7736 21610.2323 9152.5878 11332.653 18928.4225 13660.9926 51772.9605 16924.5948 22885.1288 9717.8179 16838.358 20167.326 9817.8057 14268.7644 326331457 merb Metal Homeostasis Mercury Detoxification Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 10289.5467 3800.7828 5053.1681 30033.2011 7005.7907 5763.9789 3617.4361 55830.4936 4428.6416 3238.7375 3472.6793 3472.6793 4151.1648 7061.9154 4384.7957 3295.3614 6773.6249 7134.187 3097.8152 3614.6823 8918.8969 3327.387 8445.1729 3895.9642 4412.5645 5612.1999 7659.4334 111022764 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 16792.1397 5369.2735 110954.5455 12650.1343 9787.7283 15573.1819 6733.4924 4279.8879 7097.1684 9522.9921 13682.8475 326305.8627 16554.7087 13867.5151 9965.3052 12251.2281 12251.2281 12377.2253 25151.3793 9564.2565 10692.4794 11736.3523 14422.5529 8093.7257 7026.936 19960.797 5085.2735 23647.3733 15141.4725 17612.1561 7511.3679 10615.4438 11361.6257 5837.2828 9790.3897 325536964 xylc Organic Remediation Aromatics BTEX and related aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 5747.6691 10206.0605 23723.9697 20199.2079 5139.0776 3698.4248 3852.1929 6806.935 11519.0266 9314.8214 32210.7838 11420.2691 3104.4856 3104.4856 5821.4298 10601.8592 6423.4345 6431.9793 143832.1971 9631.6475 5647.0253 6160.0436 12317.4971 70702.5152 12888.218 17862.9379 3347.526 17335.1295 11542.6049 4274.6989 83317100 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 91228.3077 54098.4693 30633.9135 159359.5278 12262.6227 93599.4563 142814.1311 20265.8841 71282.5267 69304.5017 85797.9097 1731156.6644 49173.6132 130741.9285 75857.996 59299.9339 59299.9339 47331.8435 77283.3663 42215.0412 84912.9546 108369.8597 54305.2012 45258.5218 42985.5766 93432.0574 77426.0304 201434.8459 63016.247 86480.4885 30341.2308 69059.5532 67856.161 32572.0344 56743.6919 302415260 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 11988.1035 9783.3483 5606.4262 2767.1093 3458.8058 8083.2183 8681.8759 6895.1377 8476.9218 7068.897 17391.5076 10180.092 10180.092 4819.0776 6141.9706 6014.7315 9293.541 9517.1163 5056.809 4843.2445 54123.5012 13843.7476 2506.7894 3910.7693 9892.8585 3185.9533 145595484 endochitinase Carbon Cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 32802.4259 18644.7058 48008.7527 18055.6793 18051.7532 7011.9385 59789.9067 26129.8946 4784.8001 73999.9885 32521.1799 48157.1905 406537.36 33650.3961 68141.041 22642.0761 19393.3306 19393.3306 14718.0458 26106.3 17346.7444 18926.002 26681.0502 28917.1478 22223.969 34362.3894 18781.8773 17055.7874 44526.8362 22107.6926 36431.7828 107411.4645 17593.9784 41571.7706 19303.9176 39855.7819 296166856 xylc Organic Remediation Aromatics BTEX and related aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 30276.0012 34948.4731 23335.5239 74897.4369 48948.8214 14742.6676 22939.8407 38829.3908 14990.8078 18337.0191 16347.7779 302449.3923 17766.1323 87074.7607 46699.1611 37652.2782 37652.2782 11218.4751 17195.6207 18764.3512 29387.4919 28594.5537 37892.6692 18250.8034 21826.9098 36282.5853 11895.9249 40390.608 68680.4865 34766.3225 37381.9642 16763.2173 23384.8053 8122.9387 14538.1675 219547917 arsc Metal Homeostasis Arsenic Detoxification Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 5021.7876 4070.715 62827.2221 3713.6266 3496.4878 28251.1505 2660.7318 2032.3372 4404.387 197723216 urec Nitrogen Ammonification NA Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 12844.0552 11001.0411 6996.5677 12585.9914 54919.2059 4452.6063 25179.8444 5567.8328 8169.6165 43080.1123 20739.1778 176487.4677 10595.5094 8943.9546 8835.6728 8242.5462 8242.5462 6597.1575 16814.9608 9775.8734 24285.0977 8757.5918 28070.6651 10561.969 11725.5958 20797.241 6039.5845 23119.7675 13138.4662 13097.0003 8740.0625 8482.4541 8417.7249 11050.2795 16286.3013 345888231 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bilophila sp. 4_1_30 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 4207.5853 22630.778 3102627.0742 10887.8955 4715.0255 3032.1353 3727.8619 4485.3675 73156.7804 5805.9053 5511.9674 5224.5122 5224.5122 7966.7016 7755.5374 6787.1116 6114.7278 7707.9163 2268.6379 2968.8206 14077.1115 2408.9245 11686.8514 3910.7117 6750.7071 2609.971 3332.4047 5344.3215 4075.2925 8576.2494 288943375 arsc Metal Homeostasis Arsenic Detoxification Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 86039.7865 12662.2772 96160.68 50524.6337 159125.0028 86892.0957 101075.7488 42074.0372 26972.395 59955.1185 62255.739 64519.5227 1258736.8789 76037.4733 92671.4008 97867.1369 87291.6827 87291.6827 37722.9323 115449.1767 62106.3848 241996.8539 132894.9857 98446.8835 31145.3157 95860.1659 105241.474 28040.7486 116704.1248 174755.0644 104156.5739 48451.1348 55669.6527 70838.9234 30326.2188 109798.1429 302477514 pme Carbon Cycling Carbon degradation Pectin Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 19575.7387 18212.7194 14803.8237 7244.4379 6197.9325 11178.3304 53330.0412 19168.7353 36456.2536 19536.7344 11335.2294 378904.6098 12241.7769 23911.9415 34540.2441 81212.4019 81212.4019 9769.7392 19585.1185 10392.9123 17178.8473 25832.1728 7099.663 8547.7485 11960.4921 17912.1311 8814.3047 28105.9677 15324.8959 17914.4965 13368.1054 16927.8817 11634.418 10989.3011 13885.4075 377577324 cysJ Sulfur Reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 38916.699 31089.1326 5364.6969 16834.3798 16879.9347 26288.5804 106507.2019 11384.0668 21968.4006 16163.9351 891771.5379 22106.3618 82587.997 36723.9116 19800.2045 19800.2045 92720.4421 37393.7843 18682.4527 18495.7359 17960.8548 22347.7511 11573.4027 23141.9152 28043.0146 84540.8887 45575.6089 86234.1772 24835.3579 35909.0849 14896.2578 23926.1388 15427.5613 17810.6433 299132735 dehh109 Organic Remediation Chlorinated solvents NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 134280.6866 12785.0613 43533.5564 131636.9096 122683.4732 84969.7942 82183.2526 223091.505 47897.4676 110013.6941 74458.2586 76228.0428 2383986.1669 192213.9248 176988.702 314041.2633 115991.3617 115991.3617 86724.0951 114082.1751 101501.4153 138787.3786 77608.9169 199816.5948 91989.7753 73133.5275 107088.884 75828.3341 350039.7289 93632.5896 124468.0584 163313.4294 73750.674 85586.2618 50321.2584 67913.9481 111071920 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5503.5265 4331.3924 4214.9432 4019.6107 3814.9639 60294.754 7681.669 4254.9056 4228.0448 2676.0318 2676.0318 8581.2161 7044.9816 5381.3083 2411.4466 4474.778 8230.1083 5099.7031 12128.4901 5150.4365 7282.2013 3832.8437 4659.4145 5102.5076 2618.728 403647712 chne Organic Remediation Other Hydrocarbons NA Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9093.0563 20042.8702 92150.3932 18305.9506 4713.9401 5112.605 15989.9811 7444.9408 151922.7885 131463.5661 12810.6749 15907.7609 15907.7609 6222.2529 15161.0358 8243.4637 18864.9563 13269.4152 8500.3143 9622.6595 7530.176 20293.1675 3884.0213 71628.6719 8124.4979 15548.7885 4550.4608 6884.6751 13467.6189 21184.5636 8935.688 121307524 amyA Carbon Cycling Carbon degradation Starch Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 6576.5013 5346.4521 13533.4772 8557.8922 13354.7978 7983.9334 69208.3201 8887.2671 11460.1347 18337.8543 5115.6258 5115.6258 16794.5968 6513.2052 5978.2339 4581.4107 19174.8332 4778.6091 8772.6681 8653.3617 34406.3761 14488.4863 16891.5202 3924.0423 9965.2892 12473.5758 6147.2041 5662.2184 76057573 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21025.4051 21049.6066 202066.9904 19818.8692 11306.8985 15402.037 8918.3303 18327.1674 6935.5368 7296.5397 17786.8265 7734.2369 225092.7051 14993.3551 13173.2351 11234.5705 10640.2451 10640.2451 9614.8175 22902.5805 16525.9068 7317.0906 14949.2496 14782.4658 8636.6957 17309.8279 23348.3078 47274.7033 33864.4892 13196.9209 21031.9866 12022.0714 8984.4608 11657.9207 6093.2837 8750.1358 319943835 soxY Sulfur Sulfur Oxidation NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 25345.5459 26309.2484 10578.466 18641.4277 5125.0134 16416.4443 10242.6212 8472.925 10745.6146 46476.3269 199425.1593 9771.9198 10243.0292 15741.8364 73442.1529 73442.1529 4864.4255 21374.9742 17577.2616 4805.8074 73379.6023 7728.3129 4296.6096 15664.1866 16222.8947 6880.9439 28906.7299 29733.5608 29894.3232 4360.9077 8903.1349 21182.5369 11513.2676 10936.0104 354957088 bphc Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 106117.0836 53328.4529 43272.9371 66251.7334 88945.1504 21411.1325 111082.3254 333366.3467 31786.1698 48360.6993 60726.1344 74045.6622 1313802.4079 81489.3859 72655.1408 103210.7428 86466.8078 86466.8078 39744.1763 94749.0081 53476.6217 153530.0347 71591.0366 89744.0597 32674.0255 37895.1495 164907.8716 223068.8307 155663.0868 57174.998 71020.9949 49074.44 44543.0157 36708.5454 99852.0251 118296.7766 308213091 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 12211.8236 8462.2764 379369.7987 13287.7708 6138.0438 8617.7991 23402.0569 48675.8005 12954.5052 19958.9958 16502.4445 210223.1125 33088.7601 22570.1937 41600.7219 39189.93 39189.93 14675.3603 50936.1489 13466.7023 17800.3051 62210.4243 9530.7986 21266.0854 28597.4248 14494.9158 52125.4576 1065718.5677 47382.2939 42749.0595 16664.6168 29115.1924 24094.3688 181876.8179 104206.0947 344317771 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 27719.9493 25057.9559 15480.8009 6140.6863 20337.4245 5570.9483 8351.3272 15934.6884 11326.0844 206989.2339 7200.5158 5914.4097 64859.0693 7735.2806 7735.2806 14133.7439 18314.4703 18765.7218 5109.3598 19297.9861 12228.5755 24129.2374 53182.9628 13761.6181 39904.5876 15852.5724 8595.8513 10896.7043 4366.3023 8064.6818 11406.0079 11389.6934 28138.3686 260771357 amyA Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 33477.4702 153449.0146 19458.4285 37015.2689 66576.3999 29756.2842 29426.3759 21623.4483 13097.9808 32038.0473 45065.4916 17885.6052 576221.4577 35916.876 43663.6385 34002.4572 23033.1882 23033.1882 28759.8835 60028.3357 36665.5908 36140.3197 44935.1975 41651.4346 15862.359 22699.2872 48447.2693 13701.8429 91102.4688 42458.5914 53415.6358 18904.2067 31323.9211 20666.1919 44007.2935 46241268 exoglucanase Carbon Cycling Carbon degradation Cellulose Gibberella avenacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 5626.6166 67246.4136 14330.8396 8050.1676 238759193 urec Nitrogen Ammonification NA Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 83642.7524 43817.9233 15894.6837 321296.5312 44423.9347 7498.8501 20132.9421 49487.8384 22161.3788 24352.9498 44983.5748 21119.1704 570983.5051 33560.8076 26935.1821 45636.3288 18937.6838 18937.6838 22426.6088 63798.7262 27847.4925 33273.8731 40996.1747 43048.6934 20471.9152 16294.751 52126.2006 18151.6555 91404.4888 37360.4785 46621.7356 11775.6702 26922.408 24750.7606 17846.4326 50198.2614 254445727 rgl Carbon Cycling Carbon degradation Pectin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 5922.2598 6160.6408 20942.0552 18664.4615 6254.4458 3662.1131 3428.2828 4621.5746 104268.3905 4462.5308 5662.7319 6672.2744 3586.7402 3586.7402 7507.2926 7129.1558 4900.4672 2620.767 3668.8439 9190.5967 10653.1323 6906.4405 7819.26 2787.9435 5311.8672 3512.2993 22295628 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 111871.2253 17776.3929 56108.0097 13434.2668 3281.399 3882.1094 3882.1094 7195.7183 3991.6909 4868.3207 4343.9893 3373.3797 11509.0924 116665933 nifh Nitrogen Nitrogen fixation NA Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 15093.8405 55373.4779 7009.8046 5060.7092 4365.651 13521.2467 10120.8878 21124.2284 95254.9817 5767.1413 14467.7728 7290.1362 7950.2886 7950.2886 7657.7147 38044.7266 4572.1373 9461.1693 5698.8672 2784.8877 12774.4279 16019.9893 9100.3515 18917.486 32320.3462 14441.1893 2730.5436 6555.5001 10026.4886 6710.0241 29160347 exoglucanase Carbon Cycling Carbon degradation Cellulose Exidia glandulosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Auriculariales;family:Exidiaceae;genus:Exidia; 4035.6884 5890.154 4582.1029 16975.1556 4892.4052 3928.5865 74697.5471 3665.727 7504.5144 4537.19 2656.2809 2656.2809 8539.9907 4748.103 14787.9252 12917.4161 6362.228 36569.1306 20378.2831 11230.0258 10813.9998 4865.0184 6299.2949 323365070 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 17713.4687 13327.4895 13366.8745 10589.4906 30415.3625 8828.6674 336228.6692 46488.3508 89228.2215 10540.5124 13039.3017 7143.2607 21543.6631 21543.6631 40611.6198 14479.8825 7558.216 14866.4757 16769.4793 5401.3114 8666.9882 10442.2392 8903.5186 9807.2634 63657.3061 11179.8844 12229.8672 3684.3701 7845.9315 50066.0745 6864.8745 102176.4947 144900525 PRK Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 12382.6197 9371.7961 2433.1183 8476.794 7308.2745 51898.9821 10888.4987 4850.8319 74937.7498 3824.0925 22993.0397 3361.197 3361.197 4785.5699 16993.4412 15416.3367 14313.5706 9831.97 4872.605 15797.4914 6623.5236 19881.3514 3232.8453 17421.3397 6936.3754 9192.9457 3186.8037 4685.084 8442.8321 3927.7878 7844.1816 323366320 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 87209.9608 44743.4147 102805.1411 128134.6057 230823.6191 32878.5371 313703.5056 61121.9054 42809.7719 52788.9237 100572.7898 49831.3049 1508892.375 77080.3978 80167.1046 167391.2646 59874.7171 59874.7171 40509.2271 100940.9033 60506.2127 70760.1672 104414.0756 108221.378 52135.3749 47555.3119 111685.5413 59061.1738 115763.7605 80701.5232 85532.1703 78375.214 48908.2732 65509.5373 43134.0907 117910.6982 359504943 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti CCNWSX0020 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 308480.9537 41291.9086 219938.8154 1570338.0259 167787.0653 53870.3517 165205.7792 379465.2284 73413.985 145431.7295 171530.7546 99195.6246 2684753.3857 148670.2363 172629.9921 230452.216 151090.6814 151090.6814 95597.4125 145389.4062 105228.0921 196985.3265 197883.1991 229421.564 160840.7291 95126.0021 701540.4641 189626.2399 362455.9862 332963.7675 175832.0608 68673.4953 125844.5202 121400.5865 450791.0745 581870.9854 332013135 ara Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9070.949 4996.0499 11150.1164 8826.4218 4633.9827 5601.9021 3010.51 7267.503 6972.5539 4814.1564 131249.0931 8880.2782 10671.0448 10146.4992 4150.5038 4150.5038 6457.8384 12671.4715 9932.1702 84409.5079 11193.159 9022.0225 4015.8382 5392.535 12593.1753 5491.3186 16027.9986 6820.9999 13905.4096 5442.2033 5569.8347 7251.2816 4406.5006 15412.9147 334090160 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 67878.4261 61760.7364 24829.2197 48097.4445 4977.1636 258483.5278 14284.1165 40794.2042 21901.3683 19850.7674 16719.5688 387416.8255 200913.2564 21870.1315 30802.799 15062.0787 15062.0787 278065.9968 34099.5866 28917.1362 45581.5283 51667.6844 44104.4123 13534.5704 21489.2631 34305.7237 32766.4463 123093.4452 63898.7727 28352.3876 14407.2891 24364.1338 23138.0041 12788.128 18114.2002 238794180 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 9667.4231 14302.5596 19156.9049 16332.264 4733.6625 18023.2099 3888.3755 5032.3269 43534.6544 94671.9276 3838.8526 5551.4122 2814.4733 2814.4733 9404.1245 7129.141 4564.0376 9319.8591 7884.9971 2857.1134 9230.0934 26983.7488 15127.2639 6419.5398 8003.0851 4805.8594 5066.584 6100.8448 64592.61 10604.3135 122831062 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7346.3278 14932.285 3812.1487 5118.7695 17017.582 5086.5111 5321.2497 9444.086 33634757 FBPase Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 4126.3226 12615.79 7754.7256 2981.5316 4679.3868 22823.1374 2905.4946 5670.4173 2889.9367 73735.6426 7046.8543 2425.8266 2425.8266 2788.2498 9497.1182 6585.3847 4951.4424 5705.0564 2200.776 2606.4123 6705.925 3027.2542 13980.7316 4991.2728 7776.6224 5591.812 5070.3971 5540.2181 6556.9903 7177.8408 22778394 alkh Organic Remediation Other Hydrocarbons NA Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 7004.0735 6212.7181 3340.9608 2297.4391 5453.7661 5184.9881 3202.7994 63851.1802 4929.5562 5557.045 3210.6721 3210.6721 3617.7093 11556.7406 8199.8063 5087.7705 7734.5256 2516.119 9562.9049 4434.2864 20975.5561 5827.1391 11861.9595 2807.8405 5680.8162 3847.2945 3528.4267 6461.1428 116633914 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5883.1068 8333.2576 330834676 glucoamylase Carbon Cycling Carbon degradation Starch Metallosphaera cuprina Ar-4 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera cuprina; 4900.8431 3453.3745 4923.2037 6237.5215 4086.9898 4963.4124 2263.0664 7960.7375 5391.2511 3708.9819 2663.8104 4400.2189 323276046 terc Metal Homeostasis Tellurium Detoxification Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 13645.0109 10318.7441 11286.7311 43221.6788 7652.2078 4453.0775 11597.1228 6343.2219 461958.7973 42996.9495 7089.3972 12275.3424 8444.5852 8444.5852 7594.5715 16046.5108 12063.5375 9721.9043 16719.482 12885.7756 5706.0906 6368.1815 17818.4159 8288.6784 26283.8002 16566.5847 15098.6515 6864.4242 10529.4903 8007.4148 17480.1917 13166.7667 94471125 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12436.4904 35059.7127 21531.2441 7360.9416 3574.9838 22133.026 12738.9374 13429.4117 13639.6199 24723.1326 220986.1654 47899.5162 21462.7242 16513.8294 16692.7609 16692.7609 82422.5243 20192.7342 24533.9754 10815.6831 26455.2719 14489.1182 10558.1939 16938.4767 19027.9566 10548.2546 65461.787 22495.0091 30728.8549 6472.3331 31633.3374 25649.9797 6560.0205 27298.2333 384069979 arsc Metal Homeostasis Arsenic Detoxification Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 10630.7523 10211.7626 19558.4719 5710.1247 21859.0272 3948.5786 14127.9068 9584.8534 5119.6114 143737.3124 8297.8514 25856.2883 14599.2288 5391.4257 5391.4257 8842.4122 17898.291 14351.6841 6576.8065 13177.6939 8244.9317 4865.1725 6998.1307 10291.8547 4392.2684 28479.3563 18404.2849 13445.8054 5024.5776 9606.3826 83115.7928 5526.6155 12141.9819 315037137 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Enterococcus faecalis TX0027 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 4092.932 2875.3358 3619.7998 54465.4562 3831.6671 6403.3037 5326.0187 3863.1375 6902.6732 2250.5089 5746.332 10796.406 4191.3621 5347.7287 1942.3086 2756.6227 4312.8456 2216.2123 6178.8037 39968601 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 10643.6138 44636.2919 63973.8198 7017.7848 91856.6795 14272.1497 12905.1589 14349.5404 17251.1555 11116.9325 9641.9135 7349.6099 346342.0102 37183.6438 16641.7729 34859.7358 27731.6152 27731.6152 4825.6338 20901.2864 11682.0447 8790.6289 8868.086 9078.7782 14939.743 11106.479 99264.7677 7423.2751 22076.0696 15840.8697 27899.9486 6990.1711 10152.411 16758.5198 4181.3094 23174.7684 375140503 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6614.8795 9261.1118 11988.6615 15061.6266 5108.128 9046.1963 2708.058 4536.4717 16632.3974 6761.2928 4767311.7936 9486.5404 8385.2648 28621.5173 10811.0387 10811.0387 6102.4424 11954.5596 7707.2542 6201.7713 277387.5304 6008.2576 16151.8327 5320.462 42925.0178 8264.9034 15190.8809 22362.8676 14487.6651 6459.6298 9658.5644 12587.9748 6563.2651 9502.175 29466064 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20384.4397 12533.5769 22506.0064 22423.0208 21799.8082 15018.2746 13247.3923 14246.3778 17658.1588 19803.2246 8403.7047 468545.1362 30683.8366 24963.0698 16514.3222 9236.774 9236.774 14129.7866 27562.9067 21035.174 25495.0927 20810.4693 30704.0525 9997.8869 11413.8545 22559.562 11441.9187 41158.6636 23783.0644 32433.6825 9669.901 13557.6512 15654.27 10994.2428 31712.396 261857046 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4343.4589 32540.309 6820.8516 11315.2475 4806.4694 3473.8544 3191.2495 4422.9773 12963.3757 5159.8793 177216.4257 12582.8905 9529.4033 4102.1324 4102.1324 12402.8529 14709.9885 27205.879 5649.2053 11118.6625 4085.6102 9132.4092 6662.7491 16855.8895 9306.1304 11630.0687 5115.8766 5175.8533 3237.348 9235.5822 119468034 exoglucanase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5432.7756 3584.4595 6929.3977 4728.3488 63017.1259 4227.0284 4999.7411 4335.3289 4335.3289 3227.9957 7733.125 4930.5118 3645.6456 5757.5653 9105.0292 2457.1086 6048.5731 2606.5465 9293.5978 4912.3716 4884.1629 1885.721 3746.0866 2792.821 6124.6934 223585868 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5889.4641 15888.0084 24271.1705 5480.1496 11707.92 11707.92 2680.9114 5455.0907 5879.7525 2297.7288 3598.3753 261879625 heparinase Carbon Cycling Carbon degradation Heparin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 5461.1417 4574.4284 13448.9105 5382.432 4262.221 2640.8698 120382.0623 10941.008 8190.6308 73332.4735 2428.9664 2428.9664 4260.6788 10529.6956 5886.219 7344.913 3196.1264 12605.5342 7193.023 2385.2115 16908.64 8871.2175 8085.1818 3049.0865 16502.0893 96556.8668 4442.0665 7119.6601 169175729 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 29483.5711 16035.2163 9813.2291 18425.4975 31840.7303 40467.3492 25741.7664 15700.4843 8171.1736 20943.0286 22655.5418 224358.9065 13819.7313 12000.0086 20683.1588 9594.2469 9594.2469 15633.737 22874.5424 16319.1901 13771.086 11197.1871 9252.7927 4981.7029 9430.0356 19071.2131 25179.5209 22932.9726 22016.9778 35237.5228 13799.619 13829.3071 17249.6982 8108.3194 13907.3964 83724530 nasa Nitrogen Assimilatory N reduction NA Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 118556.6916 15660.3939 17335.0661 21844.0056 27313.1575 18004.0112 18894.2591 66727.4443 16691.0654 36410.1138 56865.5319 25119.2679 13047.5283 33480.5624 113951.9236 22287.7529 37935.0035 37935.0035 18151.8775 48719.2612 24912.2149 35551.7443 38853.7508 35393.8801 12411.079 16864.3771 41814.8775 15303.2076 47084.2094 29636.9619 44558.3318 15799.0866 24294.3733 31159.2849 16800.205 30239.1694 237846168 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19145.0405 10014.6272 7675.958 11984.4063 12518.6053 15925.2296 15337.3047 19501.8538 14375.3094 26762.6034 146330.8565 15395.1735 8750.5665 42104.4645 11864.4836 11864.4836 17697.1748 21252.5549 12427.8624 18664.5747 27976.8063 24027.9622 13750.8606 13396.681 12716.7169 12397.7075 25795.4877 14523.1968 20409.5806 6906.2547 29800.9369 42351.0851 10382.7235 23376.7826 312114865 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 130021 50216.462 50429.0984 67926.6527 50772.4365 62406.3603 70878.7763 109688.6513 51332.7434 73431.0412 77751.4105 88335.5729 1812465.6835 52462.9242 47187.1078 134472.923 99835.8277 99835.8277 286003.0198 179760.8802 52287.7649 170331.1885 424939.6281 115904.4228 99838.8765 74220.7314 82998.9462 87615.1849 155380.8075 71656.7753 61758.7692 51104.2129 94555.1047 61293.4587 79549.9122 119468.813 183581740 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 10533.8208 15950.6055 10318.6904 45095.0843 15900.9964 7331.9952 18570.1277 9985.4088 10786.0417 24511.869 105537.9086 335392.6925 26635.8698 20935.6754 50393.406 29337.9981 29337.9981 10804.0646 19594.7833 12083.5252 9683.4101 24264.005 24474.4993 19155.1449 8853.1584 24009.5259 6378.0256 25466.3252 20872.75 128155.2707 8374.531 21950.9988 14226.5337 22201.8899 12961.4799 2822404 arsc Metal Homeostasis Arsenic Detoxification Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 22174.3168 113614.8337 16038.9878 5367.1629 3991.005 26338.3818 15325.4724 15319.4609 18936.0429 10706.1187 134255.1123 13269.6229 6110.0916 41075.607 21901.6723 21901.6723 11216.0099 33444.1863 17749.5115 28922.1429 24547.3425 34175.9145 18018.7077 19896.6219 66777.0045 33476.2714 34022.7486 12666.8131 19593.2971 6175.5057 18165.5713 28100.9541 40365.69 12830.3701 320137895 amyA Carbon Cycling Carbon degradation Starch Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 7750.6312 12839.6097 8445.7534 8542.5164 12755.4527 10884.0098 9339.098 4333.2475 8411.27215 8073.49393333 7190.50205 110602.772 7142.55275 8507.064 11310.7276 3217.43735 3217.43735 6966.1625 20869.72065 6576.2446 14855.1642 14435.725 5175.6611 4450.8936 11152.9381 22494.11295 21110.5676 30673.1384 4809.2072 11698.8109 170656479 PRK Carbon Cycling Carbon fixation Calvin cycle Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 6487.397 81081.2164 7690.6397 6102.1281 3767.8158 3107.727 291092068 terc Metal Homeostasis Tellurium Detoxification Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 14223.4809 23803.9418 18624.4289 6186.57 12656.1107 2168.6465 10073.7954 8023.6008 4997.8484 167524.2364 11572.5086 9780.5259 10834.5201 5244.3024 5244.3024 6737.5439 16756.6212 10253.2969 64836.5213 10832.5224 10450.9873 4809.3209 6544.5252 16221.7364 7667.504 31384.2716 47681.7181 22507.9545 3588.5752 9602.639 7139.0491 6235.928 11424.5257 385739652 ben_bcla virulence NA NA Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11842.0403 5006.547 14367.938 11996.4579 5914.7173 42667.6088 4210.1934 8712.8797 6414.1639 19050.2274 109255.2884 8971.4462 10053.2558 23325.7293 5846.7963 5846.7963 9138.6573 18615.5411 9184.8434 10068.2084 10732.6072 8811.6674 3691.3355 60049.0405 10839.7331 27111.6444 16149.4307 10502.8176 10676.261 4681.5048 42550.2198 8968.3429 68232.8198 18582.1444 261188755 protease_serine_fungi Carbon Cycling Carbon degradation protein Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 6494.9905 28534.1613 7847.7115 9834.6411 6272.7846 6587.1273 4510.2097 7234.4023 3891.2005 155055.9355 7301.8848 5693.9454 21883.9392 2807.1398 2807.1398 4197.9187 5856.4057 4300.6755 7307.06815 5581.6152 4675.976 2732.9088 2718.2816 7750.0687 2565.51555 12169.18735 7972.8728 2367.2 4138.0576 4181.87595 4657.0755 6721.6608 255922984 pme Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 5780.6164 14968.3387 3115.3515 3250.685 3800.2953 3489.6558 3025.981 70088.5817 4639.7582 6480.0228 24904.7262 5228.5618 5228.5618 3547.571 7157.1453 3760.7471 4544.1064 134838.7395 10513.9504 2502.3952 2893.1019 9981.518 4085.0915 9113.4214 4801.5343 9997.1185 2399.0797 4191.5281 4117.7434 3921.6785 5379.99 295398411 cda Carbon Cycling Carbon degradation Starch Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 69275.1262 8865.0327 13197.8572 9203.3443 18509.4736 11305.6097 37204.7617 9071.3169 8397.4239 18260.9995 13560.1581 269292.6505 13499.6953 17216.9297 33181.4316 23816.2049 23816.2049 28689.3928 45085.3233 12666.6479 106492.6655 15525.7304 28675.3026 9121.2419 38371.2134 26755.1315 27832.2926 23233.3112 68942.6703 15465.526 35737.9209 15862.0048 5803.9232 16702.6587 147886104 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 25551.9483 19966.5337 26765.8731 52564.1788 13863.1302 29732.0972 15227.875 19157.2347 16285.2853 30697.8434 22374.1917 264995.7803 13537.5207 20989.8216 24120.7752 58601.381 58601.381 37676.3606 138651.546 27309.3608 34164.7068 41170.4711 33723.291 23558.1624 11378.6503 30028.5066 16045.3201 48784.5742 34014.845 30811.5319 18320.1266 24226.7062 24259.9074 20950.151 30689.6787 1255480 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 5778.4729 3767.1089 3721.6683 2376.8815 7627.9823 4412.027 3727.1178 106013.8125 7683.2314 2916.8731 2916.8731 3740.0173 10955.0742 4873.1317 4916.6144 6253.2853 4752.8292 3262.1048 3742.2367 7781.6974 2785.0248 10966.8902 6487.0057 8440.1927 3304.0322 4859.0715 4427.9185 4320.2043 7452.0908 157285630 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5545.0771 2828.1399 3397.642 8029.5577 3532.6468 60485.5141 6049.7599 4391.2886 6541.5868 6541.5868 3941.0561 6028.0333 2205.5724 6596.4264 3260.7463 10143.6986 5606.6819 5556.4243 2319.3277 3359.7687 5573.9944 341614436 limeh Carbon Cycling Carbon degradation Terpenes Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 24051.989 14998.5132 23448.9438 27081.7005 16058.9895 70459.8957 16343.3498 9228.2907 17049.89 24978.4987 9714.2268 402752.6193 22092.2274 19210.2232 18182.4005 7721.7709 7721.7709 13830.5283 25245.1474 19921.7707 19490.6597 15574.7052 18456.1852 9276.6656 11358.2448 20832.6699 9911.5415 34529.6573 14903.0473 22264.2527 15729.2688 13445.4623 13813.4752 9350.1593 26971.4486 32141330 narb Nitrogen Assimilatory N reduction NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 88949.9015 20211.0526 5810.7864 4388.9851 5112.597 8743.4238 4792.3605 10931.6541 10257.085 9412.813 4598.0613 3282.0514 398836168 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Herbaspirillum sp. YR522 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 5871.5357 13274.3565 2716.5049 3004.2422 2243.5543 21649.3815 5667.6411 2476.8414 120690.5497 3599.7447 4067.543 2459.9334 2459.9334 3086.6662 8150.3024 4445.6613 6193.2877 6250.9961 3863.9391 8185.734 2496.0324 8279.4834 7039.8828 2886.5619 2637.987 3027.1053 2725.6321 254476185 soxY Sulfur Sulfur Oxidation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5240.9771 6560.1554 6752.3001 3473.1288 9144.4922 8140.7105 5562.0549 8348.0192 3758.7426 56327.5095 8516.1685 5243.2171 4481.131 2589.3427 2589.3427 5119.2866 15368.8293 6063.1481 22319.788 8513.0871 10190.0015 16158.863 3720.6135 8035.1218 3863.4592 5382.7891 4013.197 7512.1184 4280.7063 7318.4842 5484.4168 3859.7964 95265.933 20502013 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6167.8994 8132.9343 2181.1136 2391.3706 79392.6373 4336.1442 2020.9398 2020.9398 2735.179 4260.9043 6653.7453 2303.8931 6234.597 10351.5828 5909.3751 6443.4058 2517.4345 3257.7009 7424.7974 45386205 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 151657.8624 16368.9137 50295.9823 64420.0755 18309.876 8366.0533 30253.858 45503.3682 60159.0446 27647.4446 63271.9954 158421.3433 624279.7809 49200.0834 70421.6697 81167.7784 34618.2087 34618.2087 81915.2431 83914.8736 74756.2934 65987.873 218810.3601 154012.4779 89282.8771 94840.9753 90827.4292 58873.0531 102835.5815 48523.3345 87698.9553 19645.8433 72118.2769 98723.9608 29852.135 59693.471 301634351 amyA Carbon Cycling Carbon degradation Starch Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 11072.287 6953.3255 4441.5562 6544.4132 91768.8823 4045.3469 11890.7609 216530.8714 5966.2765 212793.3494 12988.4212 12930.9781 5501.6689 5846.1865 5846.1865 8214.2243 17136.1815 11074.5457 10365.2226 14348.588 13771.185 8326.9749 8903.7944 11982.1508 5907.1309 5942.3618 3582.4599 11957.7559 4667.0107 8006.2532 8330.5463 5636.5445 14237.6552 153962722 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 5340.5197 9214.8242 37358.9851 3626.9043 4556.7464 6106.8122 68188.9077 5921.7782 4050.3625 5653.4596 2893.9786 2893.9786 3492.5178 4142.9337 2066.787 3572.9171 5692.3644 7529.2997 4616.054 6341.4815 2618.3013 3284.2756 3312.7038 6770.4873 364009462 cysJ Sulfur Reduction NA Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 52269.1147 130026.182 49047.7564 10077.8684 9261.7717 21472.7999 20453.4535 10760.65 19941.9193 21910.1917 34162.3582 309251.2729 51223.7611 22416.8828 92634.4939 67905.1665 67905.1665 13683.369 65068.0817 20252.0766 75564.8009 391655.8147 41763.0735 47456.0212 40324.0007 28939.2941 40681.6859 303081.5506 115179.1345 35113.5917 60978.7292 64815.2231 172758.6016 128999.5127 785181.4977 405128165 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium indicus pranii MTCC 9506 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium indicus pranii; 7530.3495 8631.2072 6130.084 3689.8545 60104.7976 3890.5499 6595.1594 8167.9842 5445.1776 167355.2786 6303.7662 8818.1776 21307.7107 4140.5058 4140.5058 8049.561 13057.2876 7904.8049 11483.1741 14723.7036 16277.7828 6272.8735 6058.6554 8515.7137 7585.6581 17711.3557 5167.0388 10430.6232 72413.7107 8108.8679 7602.4755 5776.3434 12706.604 223585979 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10860.1581 7799.5461 3221.8232 5727.6321 13918.8538 3070.3213 99057.1984 12553.9089 3509.9889 4261.8563 2972.7483 2972.7483 11946.0885 21229.3863 6213.0168 8884.3011 6383.6859 6300.3327 2913.7847 18997.088 5187.1458 3642.0423 11485.8984 5026.6392 11036.9326 2748.069 4537.4463 4920.5209 3187.6709 10428.8057 374367139 SoxC Sulfur Sulfur Oxidation NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 9717.9904 11387.2774 5309.4422 28750.5075 5400.2216 6044.6557 16946.1798 9124.1152 9157.4937 15285.3482 21755.6882 228639.4163 39029.9717 10940.3684 8143.2368 16682.6059 16682.6059 35538.6541 24725.6799 8293.4174 10162.9195 16044.5922 14963.3184 7973.093 29947.7446 33132.8954 6836.0691 581054.2408 15598.61 13978.62 6386.3905 13222.0024 12940.4856 6495.8659 9330.8223 338805878 arsm Metal Homeostasis Arsenic Detoxification Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 119418.5299 24529.8484 380148.0491 26672.095 10094.6306 60671.2729 30928.8994 28317.4496 27543.5563 80699.814 36889.635 660674.3321 34256.7705 41751.0248 68905.8225 56737.5329 56737.5329 22635.1642 72131.3843 42993.5209 79322.0421 60070.3378 47079.5189 21106.985 53298.7156 57569.5823 29979.2526 81286.8585 42949.9736 47948.8937 19308.9112 30910.9008 62969.447 67242.6615 50268.6203 253688555 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 5738.0269 8953.5531 11865.4381 3178.1431 7002.4265 20510.7991 3121.8382 10452.7266 6676.7037 109466.4744 9467.8686 4058.0894 5273.128 3518.28 3518.28 3935.305 11347.9177 5026.9801 6299.5238 11341.623 13295.8587 10109.2564 7825.6345 13746.6123 39855.3554 7741.3505 4523.154 6411.2628 9924.2433 336300524 cysJ Sulfur Reduction NA Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8289.3556 4231.083 106878.2777 5163.3984 4666.5564 12884.9835 111977.2298 5947.2226 10268.8322 7653.1885 4051.1218 4051.1218 4591.2667 10470.3187 26475.1418 11829.7476 4085.3784 3487.7136 6783.2452 11148.724 12326.0212 33765.5862 8155.4898 11123.822 20720.7618 5863.6003 12028.4223 15356.392 317055058 pula Carbon Cycling Carbon degradation Starch Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 6159.1443 3660.8438 3546.052 4534.3599 10351.1038 6550.5047 2620.8365 3089.1088 5505.3287 226308285 urec Nitrogen Ammonification NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 45397.3745 20967.3348 63962.7277 14786.9496 27704.9492 18234.7168 29151.6657 16145.6246 8777.331 16762.1991 181088.8887 13159.9725 370966.4265 162502.5423 46363.6073 25732.049 50515.6429 50515.6429 53298.4321 29056.1716 32557.7711 21812.8778 69085.9712 28717.5033 12827.2282 11224.8336 44246.2515 36271.5831 87767.5791 32785.4276 31756.1699 17193.3594 22158.1696 38098.2542 11854.2594 28247.6627 383769368 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4876.9285 7024.1738 117645.2114 4424.1074 13219.6003 9346.3413 4936.0082 18827.419 3235.3187 4716.5742 19070155 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7778.7173 24581.3741 13959.9125 11826.534 7398.007 4790.0867 6377.1039 6197.3411 26808.5507 10268.7467 162233.3086 10614.9467 19794.2437 22244.2357 6576.5287 6576.5287 5399.8904 14688.0373 7669.732 6016.5695 14472.9808 6878.0383 8134.159 3915.8784 12125.5485 9654.1076 17662.2805 7985.8054 12421.515 4813.8226 34649.8441 5612.9637 3918.2912 10998.9654 82791395 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9556.7878 5438.5226 8020.2039 7415.1536 6889.5459 3314.0724 65592.3825 7177.9158 4041.4484 1760921.2234 7441.5618 8482.2083 78806.8065 27478.0671 27478.0671 5301.8385 17549.1559 6903.6095 6595.4438 11376.5807 4710.7819 3750.6357 4391.1428 13717.9223 5516.3304 18178.1909 10793.8786 11505.0263 4946.4116 6736.0666 6410.281 7270.7668 11563.5611 358243376 cutinase Carbon Cycling Carbon degradation Cutin Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 14042.4684 20517.9235 7434.1624 22313.8911 11946.0839 8180.7877 9462.8469 9852.2951 10242.81 12828.1863 6660.858 333979.3023 14954.8204 14053.0386 11282.0219 8547.2541 8547.2541 7824.2794 19684.0667 19843.5263 19634.3137 19516.6375 12881.0037 9283.6219 13338.6521 12806.9049 20978.6299 24530.157 25266.3234 27065.7864 12917.593 19711.9235 10975.3218 17650.3935 51610.2996 209963641 phytase Phosphorus Phytic acid hydrolysis NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 11855.5304 12772.7901 86983.4881 8884.8553 4185.3574 5334.415 9178.0707 7117.7211 9013.1276 182086.9709 6896.9262 8188.7518 15798.3488 13095.9552 13095.9552 3635.185 13112.1391 9677.0898 4439.7283 28034.4243 3187.0242 8266.2504 27102.5033 7382.7311 21230.6911 11876.5911 15809.3787 7508.7193 7007.7982 36129.7727 6026.1426 8282.6812 357039623 B_lactamase_A Virulence Antibiotic resistance Degradation Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 23474.6955 91183.1986 361780.7933 27035.0985 116441.7721 52076.215 8767.1486 25004.2648 16914.0987 71323.5025 22523.2015 36173.3648 647670.5707 47919.2164 52119.9828 102030.5998 42241.2411 42241.2411 12379.9778 41426.0804 33042.4789 15382.0148 35672.7288 14430.4398 8171.4992 43329.1071 78808.4572 12915.3034 68291.2728 33772.3883 56608.313 17241.4099 26257.6396 17274.0517 12490.3502 33445.9543 118650748 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 144802.9362 22691.8361 88405.9242 61425.3863 74332.4992 24088.2586 212051.3269 67152.2724 46947.3137 61963.48 136029.5839 178092.0194 2001303.3579 85105.565 101288.8245 121013.6924 122674.9008 122674.9008 56338.1759 163617.8147 102150.7578 537120.4659 200209.966 135647.8976 59420.9936 79728.8807 86407.3932 88232.8233 308210.0709 164173.552 125008.2874 57834.2144 117372.005 116258.4404 127569.6692 611942.3509 374576254 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 37765.9664 419927.06 55080.2959 253325.9847 6657.1109 678611.1955 30070.948 35646.1076 25162.8066 46991.4244 34309.8948 1254499.8708 37994.2809 172698.2777 35793.4903 24255.1373 24255.1373 22934.4665 51871.4902 37141.9309 48109.8007 37253.7996 30671.3413 47692.8855 19976.8308 40484.3654 38552.2425 223094.1255 46617.3015 48909.0438 22212.9652 42129.5327 36725.1138 131153.929 45862.059 154702337 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 5598.6646 7145.7393 20196.822 4651.6199 2815.7838 18674.7213 5277.1981 7675.8973 2849.6718 184552.8463 5741.7186 6820.3979 3219.2125 3219.2125 4172.6188 9834.5633 5282.0693 5495.7363 5938.5879 6577.0793 2641.2436 3410.135 6996.3951 3061.5014 13034.8568 4951.9635 7880.0272 2890.1803 4712.0235 5388.5706 3055.0266 7800.644 167461486 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 10497.2303 6773.155 78316.9563 13066.2757 3710.8897 4960.2945 4598.2695 80075.3095 4858.5719 2681.9639 2681.9639 4043.8927 9451.7816 8121.7886 78864.7929 5026.2615 15140.1405 3940.5734 3935.7027 8401.6209 2777.931 16809.765 10074.4798 16382.8635 4337.2711 4947.4391 4497.6856 3100.1511 11960.6931 338211391 amyA Carbon Cycling Carbon degradation Starch Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 35571.956 17511.4935 11115.6323 30689.1025 79371.574 14352.9871 13487.4385 25910.5099 24517.1187 32056.4015 45600.5832 24125.3197 343474.8165 31075.2828 38210.121 60522.8468 18688.5 18688.5 13940.0334 54797.8373 29043.1697 22239.4416 30749.4146 57515.4101 11242.8233 18026.8306 33580.2309 15891.5687 73543.6669 46689.1634 39343.1378 17537.1603 18631.8406 21715.8399 12256.2712 34522.5085 170108658 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 8947.6093 6271.0055 2949.1548 4524.5075 2860.3066 7479.157 7904.2345 4091.653 6278.8798 3959.8582 4319.8288 2539.0045 2539.0045 5397.1674 7421.687 663704.2377 2895.8463 6013.1296 2138.4359 32495.6914 6877.315 9757.5655 2913.1718 4422.8028 4663.4144 2654.6895 294340907 PRI Carbon Cycling Carbon fixation Calvin cycle Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 39564.3561 7636.1181 89815.5932 18190.8 7600.0882 9385.0541 18079.896 18558.787 12822.0114 69757.117 7328.6698 28509.2841 13904.893 14843.5595 14843.5595 10037.4937 67831.2266 9726.4954 29538.2554 24569.8888 22288.2849 12968.1017 15077.5092 25148.1877 25297.9038 59507.159 19000.7114 24504.53 10246.5639 37220.0529 36251.0338 22832.5272 13813.0226 111223515 camdcab Carbon Cycling Carbon degradation Camphor Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 900707.1975 114123.9325 509963.7962 1073356.7001 882297.4868 431165.7575 462265.7659 682597.7071 538760.9843 565891.5897 514123.7305 375818.7724 14549330.0703 480882.533 670754.2664 1630406.0073 619620.1901 619620.1901 355348.249 557438.6804 379992.7763 525091.3685 909402.8582 562997.388 408666.5615 318247.633 506945.8219 281201.9734 917770.2195 541409.2021 681567.3432 404261.7052 367240.6585 373850.7276 284924.1776 1822553.3276 28864361 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4159.8134 2328.6397 4871.1089 109921.2925 3043.9499 7951.0758 5642.0997 5379.8753 2667.5527 3405.236 8085.2136 2510.1697 10729.7643 6671.1833 7752.3739 3352.2387 3849.4418 2588.802 7921.4184 291307392 cysJ Sulfur Reduction NA Neisseria elongata subsp. glycolytica ATCC 29315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 13449.9467 8266.3226 16334.6374 20044.3228 4476.6645 7793.1622 232007.7525 13755.1382 11105.0677 13872.826 5703.7178 285804.7884 10075.5658 12489.9912 5378.365 5302.1422 5302.1422 9839.3588 18742.8409 12619.7117 11873.1471 14267.6198 17660.574 6070.8477 6941.0641 19885.222 5040.3562 25253.4375 13725.6681 18318.1371 5891.267 10965.5894 11447.795 6913.018 21141.5521 133911774 chnb Organic Remediation Other Hydrocarbons NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 198113.0566 35206.7371 243542.8184 66152.1192 72765.8661 47247.2652 139989.1025 116661.3826 213486.8347 143387.8604 172641.7222 74825.5143 5593290.1993 117780.7138 151859.6027 141361.2289 118830.7679 118830.7679 45191.9431 158712.4199 59802.474 281083.6699 243989.1158 91827.1102 82212.6994 84727.0577 99052.9825 93238.9134 380659.1404 72786.2324 146357.9003 85751.3436 154303.8319 145024.9226 84929.3221 143657.319 162072842 dsrB Sulfur sulfite reduction NA Thiocystis gelatinosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 5777.4831 13838.0038 3619.7484 23579.2687 6266.5533 7376746.2677 5223.2179 11226.7596 3202.5297 3202.5297 14751.3917 6633.2986 4259.8089 6024.3529 30500.1662 7162.6323 18105.3227 11111.065 23677.9286 4574.1971 5293.8119 34335350 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23342.1643 36125.9886 55975.7792 195826.0368 59647.7576 9036.4739 26279.7598 16018.1532 37830.9117 24477.382 22043.9219 743240.3427 23854.607 27329.7905 36483.0915 29185.8552 29185.8552 35714.0313 48648.8181 21692.9085 25225.9736 28148.2452 20895.6381 24592.5048 35448.8251 39420.9524 24846.063 348401.3765 57080.1208 185204.4223 19325.6407 47642.0489 17506.9675 16578.8331 45446.9795 262334437 chitinase Carbon Cycling Carbon degradation Chitin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7902.1495 5610.0289 8754.3026 3529.8329 3140.1478 10895.1125 7290.6628 3117.9367 89425.4949 6077.866 5642.7533 9329.2378 5988.3828 5988.3828 4412.7499 9188.8585 6029.9301 8903.3557 11519.3473 8937.9889 6290.7906 3931.851 7817.3228 3091.3363 12118.9782 7449.2758 2164.9443 3881.1185 5983.1122 3825.2508 8469.3905 197773295 ppx Phosphorus Polyphosphate degradation NA Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 21503.7664 23108.8146 22153.0615 17005.7993 5872.7896 6760.952 10999.5607 7869.8128 10582.7529 23082.0424 7641.4063 213729.2232 11263.176 21246.942 13495.9034 82958.5768 82958.5768 71024.7518 20591.0734 12567.3105 18575.2157 27942.7118 35541.8621 10213.7488 9982.2604 20757.8501 10666.9666 34243.6385 17807.1803 26015.0558 8012.6833 16710.4662 10736.8626 12045.9085 28429.4387 209401830 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5713.3737 50974.9569 16044.6249 2822.7294 14926.0985 3731.9187 6734.5575 5112.0973 3278.1095 3278.1095 6677.1624 3873.4489 3061.8424 8249.9368 2564.9473 8257.436 5740.393 7767.4829 3276.6243 3956.6877 8202.1413 9927.7567 87280972 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4635.4068 19710.7979 4715.7758 3538.4831 4388.7047 4013.4486 4560.584 5401.0443 4880.1505 11362.1862 11362.1862 3218.3203 15837.082 4188.7725 10996.9248 16074.5027 3457.9847 2978.1439 5855.0943 2425.8578 15357.778 4299.3575 6303.0623 2833.4474 4712.9302 5880.5485 347586252 ppx Phosphorus Polyphosphate degradation NA Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 3950.1387 2359.514 3101.3929 2628.4015 102530.2227 4024.2985 3162.2199 5428.2411 4393.0555 4250.2561 10626.908 7072.4169 2327.1685 7636.0196 17439.6058 3757.9305 6212.6807 2268.6791 3224.6974 3655.1956 2062.5092 27350496 xylanase Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4348.3273 2571.5411 9673.1473 5811.7967 67523.9324 4066.451 3610.7801 2192.9117 2192.9117 7883.3613 6380.8918 5181.7754 4130.9739 2321.0317 8978.3562 4185.5053 7086.6924 3363.5148 3878.4972 5484.8195 3100.3555 5859.046 117949582 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9175.2051 8042.0646 6320.6082 47971.091 11932.6219 14291.093 7365.6975 13099.0415 14286.3672 26774.3329 294970.2508 15019.1299 9974.4329 12565.6569 15424.7715 15424.7715 4904.9152 19958.1352 20694.0384 8986.7681 12030.1836 10672.8912 5425.7438 8396.4421 362346.2578 10506.5199 15844.1391 12675.0365 21323.8482 13875.5603 19606.676 16950.2253 360863.5795 19551.7185 388245931 chitinase Carbon Cycling Carbon degradation Chitin Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 4393.1039 4270.0151 5099.0704 4174.58 84269.237 7306.5397 3532.5916 7617.3285 7448.4034 3958.9115 7799.6575 2442.1459 2995.1326 8204.1807 12716.8984 7215.3013 8269.4565 2518.336 3990.6556 4795.7891 3175.4659 9564.1535 241660026 axe Carbon Cycling Carbon degradation Cellulose Penicillium aurantiogriseum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 5962.3939 19158.5997 4986.7168 10388.1421 4724.1011 97560.8223 4532.4956 4086.6369 26908.0209 4451.568 4451.568 5151.8064 10621.0362 4699.2329 5113.675 5161.9049 6045.0884 7292.5988 28471.866 10631.5218 22048.2853 10679.2414 6061.7126 3999.559 7023.7684 5256.0672 4975.6358 4931.6543 62003505 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6092.9775 29767.621 2365.2903 3660.7737 6034.8418 3343.7835 87374.9708 4726.2808 5153.9599 7699.3216 7699.3216 2626.5144 11948.2662 5831.132 4271.0388 13399.4416 4157.3134 2741.2397 7054.9476 9657.4355 4162.9507 14632.2286 4199.187 8035.3337 3167.2003 4962.3643 14138.5431 3079.5763 6953.5275 119455167 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 5444.296 36454.9709 5409.5734 23380.9896 5144.507 7933.2354 11509.1392 5240.5289 9860.9288 5254.1639 210325.6697 10727.0477 12100.4547 20279.7693 10175.9486 10175.9486 3864.8719 14941.8207 7790.9724 7084.9995 10726.6323 9538.6303 4722.4193 5716.2535 11683.0788 14833.8142 38250.6435 10370.2011 30206.9391 4859.47 14870.5386 16014.7428 54346.7116 13448.1229 63003127 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 9099.0378 634527.6143 175047.3907 20922.02075 11662.7586 8103.924 5725.6388 4425.5497 11190.3113 165953.5634 10029.8952 12310.2888 13616.5886 6584.508 6584.508 6808.069 14443.9802 9555.28685 28423.1978 15236.6688 12470.1069 36197.7309 9888.4949 14090.44045 4745.34615 73477.71685 9197.68385 15637.7659 4588.673 6318.52665 7793.2208 15826.6627 358244526 nirb Nitrogen Assimilatory N reduction NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 10131.4744 5629.4908 4251.5529 12952.5616 8083.5656 8912.2392 4455.299 7868.9235 21166.9509 8969.0919 166449.6378 12029.6665 8334.5797 5296.2419 6151.7166 6151.7166 3991.0782 26166.3983 13541.7883 26149.3905 14974.8899 10578.2412 5914.5934 5157.2768 11447.5724 4431.3491 38296.3967 10011.8132 16942.3436 5362.3462 17903.1957 8639.2843 9250.9865 21009.8862 332654037 cda Carbon Cycling Carbon degradation Starch Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 23831.7368 11747.2258 17918.0283 18296.6608 6867.8484 17383.7004 12460.2003 9613.3409 19217.9658 16541.5868 6129.3043 363431.1862 20657.8675 17630.4269 17522.1047 8999.9387 8999.9387 11302.0833 22682.8961 15386.2057 20052.3671 22763.5139 28605.5629 7373.5224 8466.9963 19895.4814 6053.6101 28595.2867 18057.5218 24328.6094 6719.4198 7979.5801 10993.3153 7068.0769 24336.5055 89043168 tktA Carbon Cycling Carbon fixation Calvin cycle Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 4815.2622 4052.1808 4912.4398 6345.1357 6000.3304 3813.1657 20861.053 5785.2497 165350.6404 6829.0702 4423.4868 4617.8189 10784.6732 10784.6732 3084.0354 6818.851 3663.0137 4805.7602 7029.1508 8432.4182 2200.8391 4820.6305 6373.7188 4272.3112 16396.905 27048.3687 5256.2003 3481.2239 30556.5497 5523.7962 6579.6619 269125758 cutinase Carbon Cycling Carbon degradation Cutin Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 264763.114 39033.202 53221.1541 62998.8488 18598.0152 110869.4588 85802.4353 15736.6801 68466.0492 50624.7657 66560.809 6396957.0671 119006.3207 84049.5365 220203.9387 94828.7058 94828.7058 39226.7513 127597.5647 43984.2473 208019.6625 156140.5228 351162.1192 83218.2077 82904.5536 55329.4464 39571.2253 125408.825 65794.6709 85474.4977 40722.6916 90980.5951 53290.1967 35899.8405 151363.1514 333808837 nitrilase Organic Remediation Aromatics Other aromatics Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 5783.1572 10459.2034 8525.9328 10230.6423 4415.6114 1894.8708 4692.6129 5361.6842 156932963 arsc Metal Homeostasis Arsenic Detoxification Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 721931.5016 191081.8542 364318.5182 1867146.7111 1761667.5581 139478.4061 281126.4775 626136.9875 411120.8683 267508.2117 419329.3739 301320.6368 15583927.1289 500454.2195 511244.4469 739461.5494 373014.3403 373014.3403 331689.2904 404752.3239 234412.382 739547.2078 532835.062 861119.5209 375337.0081 281616.2974 602605.6601 249331.4796 989269.439 590115.831 529316.1136 216459.8915 258880.7489 350051.8866 275478.6284 830384.2836 17742881 napa Nitrogen Dissimilatory N reduction NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8575.7486 6546.138 7597.1648 9766.1133 7266.645 6287.7793 2257.8025 7577.1573 12195.3371 18000.2998 176435.724 10007.8259 7798.2713 4585.038 4585.038 6581.8926 15417.2476 11347.3033 7333.5565 8841.1502 11314.0545 4811.408 15170.6031 19074.9743 3653.7224 14120.5571 6730.687 13928.2839 5765.638 6545.5475 6582.7601 4746.9042 14141.7495 269469112 soxY Sulfur Sulfur Oxidation NA uncultured SUP05 cluster bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales; 10655.4418 5944.2364 10907.6813 12683.8132 6908.6872 14878.8432 7171.2486 10979.5624 11624.1833 6020.3177 215088.3004 16476.0727 13460.0867 13127.9527 7753.2219 7753.2219 5745.383 12065.7951 8821.557 8129.4348 10552.6996 13447.0882 4589.8147 4874.1237 13886.8637 5163.3647 37461.3173 10470.9186 13474.2932 6526.0155 12194.6933 7080.9765 5100.0487 11266.1681 116226010 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 19298.3145 14305.5824 4594.3428 11906.4874 29537.0337 8126.2299 14935.0821 6371.5374 111530.0961 21635.1972 17315.5937 13098.3378 7273.3056 7273.3056 3828.1309 32896.5281 12921.9104 8762.1847 60928.6213 5799.1396 51836.8698 10619.6428 6621.1438 16986.6538 95326.2147 11806.1909 4622.3597 5104.9062 14309.3928 13008.412 10977.494 227213116 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. infantis ATCC 55813 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 17796.4652 11342.1234 16671.2839 9852.4518 11953.7673 10749.3473 19279.3908 16774.8158 13242.5585 7485.1848 192069.2794 17924.3669 10769.8441 9070.4173 6335.6024 6335.6024 8225.2515 17737.4731 13011.9497 19207.7953 13299.4807 15051.5929 8448.1304 6968.5682 14230.5434 6794.7512 23444.817 6257.5863 15878.0678 7254.2909 9084.2009 9269.9485 8488.4299 14631.4068 119356634 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 11273.43 3156.166 5551.2877 5685.1179 6417.8087 8906.0805 10466.5053 164040.9967 41328.703 12332.9577 30033.3487 30033.3487 50660.3405 16759.7394 15841.8413 13479.8308 18299.2759 7573.4531 8154.0903 5919.4692 9046.5987 2819.8762 38786.8624 18745.6571 14792.1426 3875.8406 13232.9932 21697.1344 4939.3698 12333.6261 212541000 amyA Carbon Cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7462.6461 350886.8467 2199.3373 4812.4189 2675.0865 78515.0239 9177.0276 3095.1503 19267.2912 3927.4412 14225.8053 1926.076 2915.0314 5135.1494 356690779 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14822.6154 7846.2386 7783.5703 23216.9276 3181.7758 8600.488 8173.6316 9276.794 6894.445 7537.6008 157511.8237 8371.0521 10412.5963 7369.9171 5764.653 5764.653 5862.7098 17516.3517 9233.9032 7573.648 11466.1043 7544.1634 4047.8854 8230.0278 34515.6216 4894.2029 19198.988 15688.9071 10214.206 4567.1981 6812.5509 18843.5356 5207.4706 40239.4786 164455682 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 24145.7527 233053.1178 13748.1929 18747.3719 10184.236 13075.2776 18014.7236 29378.976 31462.5575 19231.451 228462.3796 17732.9311 37821.8253 33645.0715 23674.6298 23674.6298 11755.4591 32532.5346 17986.5514 26559.2103 96728.2979 15468.0011 9382.94 28500.6181 38822.0723 25131.3787 49183.2666 18466.8731 24237.4795 19160.8623 15877.6832 25045.9301 19249.8373 131888.6365 28378213 narg Nitrogen Denitrification NA Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 9359.8737 7244.9483 7441.2398 7302.4769 6526.0684 3450.588 7206.0047 8023.0724 4300.4544 164168.6644 8625.915 7836.8785 7744.1646 7089.2036 7089.2036 6584.9493 12435.6866 8534.6452 8481.0203 10460.5325 6520.0306 4254.7481 16830.0436 12611.2561 5977.5817 18250.6645 11340.1828 13040.4447 4784.5579 6836.6096 5911.7921 4811.9673 12612.2631 70985709 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 7713.6446 15766.554 9501.245 6516.8956 6070.0112 5321.7948 4500.6263 6445.3914 6104.365 2728.3779 162163.7583 7531.6807 5147.8445 4957.7138 2489.7239 2489.7239 6010.7572 7713.4224 7720.175 12313.5544 19323.1764 11168.2323 3468.3334 3397.5903 9674.082 4063.3668 15521.6247 6374.7642 9450.3377 3450.6603 5870.3032 5114.3108 3150.6949 9260.0987 380832881 poba Organic Remediation Aromatics Aromatic carboxylic acid Kingella kingae PYKK081 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella kingae; 17250.5333 17684.6132 7185.1228 4396.3227 15150.8141 11403.7635 102255.5434 58148.7542 14183.0796 551790.6985 28095.1824 21306.5635 8776.2403 17716.9462 17716.9462 8700.6019 31253.4834 10870.8323 14349.4987 68915.9106 66340.5663 9341.2802 20206.0136 21342.0571 39181.4838 31213.2708 15570.1041 14741.227 24825.3284 13264.353 16959.0567 10553.1649 35420.8132 113196156 chitinase Carbon Cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 129557.6726 35029.5567 197024.8198 7003.5616 22056.7024 48960.5776 15665.2194 22121.7276 24079.5206 16490.426 610049.6001 57662.7411 36355.4184 33424.7902 12420.3494 47243.4704 32951.5139 27423.5985 38020.6126 25026.2087 19468.9177 59573.9786 48356.4318 80152.7314 31900.8286 30067.4634 13513.4834 32434.8892 124488109 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 10177.3486 9884.9386 9948.0248 3684.9881 5984.9787 3278.2683 13776.6884 21790.3301 5662.2178 251428.6838 42275.3631 7509.7884 9530.014 5183.6604 5183.6604 6641.1457 14853.9084 8036.5343 9036.091 12913.0996 8030.3845 4310.0543 4749.0099 18621.9313 6274.5442 21355.5592 9302.2217 17315.5807 5262.8677 4497.1415 7371.5574 4164.5467 8414.8082 297580613 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 4325.9779 29005.2491 18474.2147 6241.5971 44770.1652 6360.0001 5719.0718 6623.9634 7374.9502 7937.2607 103646.2566 4957.6174 14044.7885 8386.9375 6227.6007 6227.6007 3717.1552 9408.9477 7753.1044 4568.6575 12937.365 7622.0708 14293.9902 4982.6056 14425.6097 14018.0984 14605.1846 6021.129 7538.0306 6721.6892 10608.9544 4646.2607 289646913 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. aesculi str. 2250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 6193.0219 29819.1258 9367.8348 12196.8544 9875.8165 7412.2305 6072.2562 29245.3954 3460.4072 13780.7501 13780.7501 5810.0228 4715.4948 17361.1494 9371.5723 22595.2342 3110.9645 12757.6913 16493.0226 4024.1121 745052.9122 4473.5601 6327.0026 10450.5437 25157.4197 5403.3848 2257.7407 8592.6297 154251548 PRI Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 24753.1025 160852.8125 122819.7823 14957.8656 9509.9017 25110.5077 26654.9736 10084.8346 21077.1639 33820.826 183471.5365 58187.3984 44588.8998 17801.7696 17839.3415 17839.3415 28217.1786 57437.5719 13582.5379 12452.4612 29309.4206 69237.3258 11031.3412 34759.7945 35677.5584 24834.7722 44083.4255 32712.3715 30584.3996 16212.4882 28406.0989 23024.4792 14745.7262 19293.0406 300390295 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 10768.6633 20571.949 9275.7575 27629.488 7309.8654 79596.1946 5956.5127 7891.6754 25547.3846 150601.0115 21311.2906 14527.3902 8593.3433 7895.5619 7895.5619 4950.6172 20052.5123 6763.6964 12270.8029 12075.1046 6424.3187 11034.9778 13297.6376 4599.1972 64985.4863 13857.8264 37581.6399 6413.005 10345.481 10887.5581 6306.0291 14632.9216 117981544 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 11257.4211 5012.9401 19236.9942 7153.1289 2353.9068 10035.5989 4410.6557 6944.3826 11361.9892 8718.8126 260685.6043 18415.341 12860.5409 15374.9919 12551.7661 12551.7661 8991.7417 16785.5659 16745.1868 12904.6321 8838.5281 4908.6321 13848.8417 29015.0827 6765.1406 32076.184 25957.8784 81494.2888 20186.2074 28494.9239 11506.1094 5966.9265 15395.5219 326780694 cysJ Sulfur Reduction NA Streptomyces cf. griseus XylebKG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 161764.9596 12577.5825 24438.9937 41660.7169 172171.7608 37886.1233 28117.2403 24762.5783 12652.0178 25708.2334 69792.7999 25224.6937 704944.929 99191.956 37111.4114 54723.5007 47173.2931 47173.2931 37336.7658 51233.98 38155.7881 52756.1637 62036.7649 31479.8574 24697.6562 22068.8372 54489.014 17373.7653 62657.1314 48510.8372 50188.6636 23177.2559 24542.2443 26048.1686 14336.3913 33293.972 315250987 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 14153.344 6630.8124 7409.9232 5263.1405 2951.8073 8990.0566 8124.4776 5194.5309 148156.786 6000.9431 12206.9693 11283.3616 7780.4745 7780.4745 4678.5701 14055.7828 5691.036 7860.5455 15073.1861 14570.769 3465.5743 3881.3565 10257.8288 5736.6439 14583.0488 4394.0481 11027.6954 14531.4643 6194.2728 6508.2674 2972.6827 10978.2081 269933986 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 44394.084 189163.1954 29182.6687 21917.6011 24203.6136 53091.3774 26466.2709 22625.903 24180.483 24392.4199 466642.5482 31169.7879 24526.1936 25332.8101 25572.4361 25572.4361 17929.3362 30992.2639 25918.6026 48995.0025 65371.6743 29648.5023 17930.7209 18349.6994 25584.2338 18757.3192 55775.7215 37609.1943 43872.1488 11246.3626 16424.824 21847.5283 14841.8231 31025.334 119956588 amyA Carbon Cycling Carbon degradation Starch Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 119338.2047 119392.9522 13439.8723 21106.1344 9779.4986 193894.1206 35944.0204 45211.3149 78613.7929 43212.3172 67851.3571 717804.0804 54812.1745 58676.4545 544251.1144 57127.4204 57127.4204 79308.8382 92194.648 25817.7539 92937.304 97178.4103 34011.5819 109122.5978 126098.4118 51562.637 46789.7672 119802.3971 95277.5738 54930.9723 21155.7229 74183.102 87818.5113 32256.1577 124286.2966 85696951 arsc Metal Homeostasis Arsenic Detoxification Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 7630.3241 3255.7941 4082.489 26797.3199 4954.4816 5121.7975 3356.5281 105838.9346 4808.2954 3927.2508 3257.0446 3257.0446 3604.3235 11233.2521 4664.1286 9607.6255 5465.9076 9706.0232 2512.1152 3276.6452 7688.5407 3789.6315 12795.4587 10275.1409 11029.2521 5271.8792 3996.8446 8869.9817 4668.0925 7425.7003 145299749 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 4738.5654 3674.2301 2416.7959 3357.243 4607.0864 2432.8409 2432.8409 6824.3208 10874.956 4570.4358 36754.6753 8886.1833 11466.1222 3286.1741 6661.4891 4344.2551 6169.2254 5833.8758 3753.1339 5917.0645 164415622 mer Metal Homeostasis Mercury Detoxification Sphingomonas sp. Seq21_b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 17633.075 126507.1717 8731.5208 2284.197 2692.5718 2553.6537 19226.9773 4300.0389 8086.189 84741.6881 16598.9212 19222.7657 11482.7954 7075.5855 7075.5855 2793.2883 15257.6577 11257.5467 20241.1863 19314.5115 13166.656 3084.746 28631.0839 8313.9241 3347.3871 31346.072 13338.4704 21201.1484 3415.2372 64954.2881 7890.6204 4079.4568 10414.2732 326950742 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 94387.5676 107838.6653 139363.4951 58179.0787 13662.3145 35161.1368 31025.8138 23018.9623 52877.6368 34765.3356 53874.3694 433646.1003 41369.1326 87661.2208 93321.4461 33760.2268 33760.2268 29072.2027 100353.8683 31018.1711 58674.3986 107989.6543 44039.0006 45627.9462 59533.9394 53875.0793 47705.8545 105644.782 62202.3417 66399.2682 50217.5799 50104.6661 63679.9263 68652.0291 51902.0707 238843148 cutinase Carbon Cycling Carbon degradation Cutin Microsporum canis CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 24350.5566 28054.8147 14493.4895 10136.1402 4294.4968 5295.3804 6001.8642 10035.523 14615.026 13478.7785 21201.0995 1050712.4422 15910.7492 126068.4302 11067.219 12196.8119 12196.8119 22474.8591 42713.0542 20480.4662 16558.7409 36960.5233 7752.2094 7198.7406 20362.6531 15124.3132 16378.2343 36978.5233 10717.6223 43734.3405 9115.278 16079.2233 29461.4567 9681.362 19976.9461 256685143 arsc Metal Homeostasis Arsenic Detoxification Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 6738.4988 5098.1112 13194.0317 3203.1578 52379.8791 58940.7655 4379.9519 4276.0904 4276.0904 7051.7442 8094.3093 7731.3941 5480.4124 2829.1944 8277.2329 2926.275 8572.6236 5590.9499 3448.2762 3726.747 3393.6792 3014.2824 6066.6456 32445105 tehb Metal Homeostasis Tellurium Detoxification Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 65383.7606 751015.5537 162382.1654 4793.2397 4052.3707 108945.6962 5990.9935 19232.9496 23981.6103 19150.3769 83441.2026 4795.0269 280432.981 105612.4871 7815.5777 113187.2589 2585.16 3221.3194 250274.6312 362303.6915 111023462 ppk Phosphorus Polyphosphate synthesis NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6704.0114 6239.5782 7393.5191 5980.781 3567.0166 3609.0962 4425.9874 5948.3218 3936.4746 184141.9924 4314.3619 8462.806 5082.4158 4388.3657 4388.3657 2669.771 9455.1088 7589.2285 4007.6123 16420.8505 11226.2921 3222.7468 3782.4737 6756.1206 3775.1323 9344.5602 4078.3084 6021.5342 5153.393 5296.7366 4588.7224 2292.5244 8584.4078 167964816 cysI Sulfur Other NA Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 102257.6732 5685.9068 11967.2885 109509.6599 4427.0596 2762.0307 1919.6938 4530.5342 5462.7047 229864795 amyA Carbon Cycling Carbon degradation Starch Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 33930.764 14213.7138 7720.344 80278.0813 24738.5967 10177.5477 37361.1001 62372.1086 34641.6017 470256.3446 16679.5099 38221.7748 34405.0221 29494.2733 29494.2733 5893.211 33828.1578 23706.8183 7066.9269 85883.5959 5068.2261 18634.081 28079.8125 15389.4876 26330.6982 204990.9342 51048.971 22727.6074 13084.0544 14524.8141 19116.7459 23396.9975 363719063 phn Organic Remediation Herbicides related compound NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4730.985 4744.1061 4167.6487 5863.2546 5787.2176 5787.2176 8285.813 4910.0717 4854.3311 2491.8551 3099.1979 5159.1124 2399.5936 3059.6957 4134.2469 281420404 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 13616.1111 10033.2501 28271.0016 11512.9893 11001.4351 31396.7904 5522.5537 8081.9046 12998.7363 338766.8749 217494.1497 19300.0839 14268.7187 11790.7046 54196.4226 54196.4226 4867.1872 26242.0327 13559.9925 14573.4593 20814.1717 13974.9735 7763.3398 7924.0436 11875.6701 6764.093 30476.4544 10123.8594 16302.3513 8601.8481 10109.1177 15691.6439 7162.2918 26176.3762 134095033 TIM Carbon Cycling Carbon fixation Calvin cycle Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 12150.5519 78003.3526 88862.1542 4993.3183 3234.458 3234.458 4318.2511 13810.4157 35201.9085 3927.6553 17057.3069 3693.6269 21826.7125 335356798 cda Carbon Cycling Carbon degradation Starch Lactobacillus animalis KCTC 3501 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus animalis; 31338.9347 11609.7453 9668.3183 13170.7637 4797.6408 5826.5809 11553.5721 9649.6011 10848.445 11328.0114 367362.6863 98166.2652 14656.5302 8773.7062 15146.4745 15146.4745 16814.376 22405.9144 15558.9535 14653.9872 19844.418 64700.4867 8517.7886 19601.4349 6334.6663 31595.7142 15006.0169 19062.2406 9827.5097 11509.3839 13263.419 9744.4531 178715.2215 157804834 aps_apra Sulfur adenylylsulfate reductase NA Thiococcus pfennigii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiococcus; 4033.9465 4792.4463 4007.2188 5370.6994 5609.194 3788.9887 3464.2154 6149.3281 3483.4946 5301.085 5140.8105 5298.6448 2075.5997 2119.81 8847.4653 1983.6382 7873.9126 3441.7993 7125.2155 4987.9018 8896.1528 3391.831 3116.2384 6400.6895 395808967 arylest Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri DSM 10701 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 31623.1754 17964.8879 12643.2172 29773.9194 21048.3838 18475.7527 11677.3155 24350.6216 8901.4753 15825.9026 19761.0524 609951.7751 19843.6076 13325.3279 63426.5546 17109.8322 17109.8322 15104.824 43687.3918 19472.1629 35000.4397 36910.6092 87706.9638 18344.1121 21059.1673 40627.3521 25008.9007 53385.4401 48928.4124 31619.1655 10420.5966 22620.1275 26670.2545 23459.4936 55121.5304 294338565 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 6786.0902 6237.9957 7600.5854 16221.4005 5377.506 5132.6235 9670.8026 3375.1063 8275.9471 4943.0104 3014.9644 71280.4544 6957.7745 5151.8078 4866.392 4932.1243 4932.1243 6875.6146 11334.9326 7583.3666 6306.8242 8412.0743 7841.8584 4629.8525 9916.0809 10096.9454 4927.4564 13927.2005 5881.2893 10452.8407 4784.7715 6656.5257 6999.1789 4575.2474 9456.3891 219848236 mch Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 77570.0555 12362.7517 9480.4485 28393.7996 99291.0962 11080.9134 47952.3823 14108.3852 15327.9219 37327.5824 39691.8399 168478.5793 13749.5026 25318.9897 26414.3019 23417.4181 23417.4181 6301.9972 32817.0678 30497.7052 10521.6107 43012.2576 20074.6652 16150.0551 16914.4294 23634.6163 41674.3909 34325.8744 22025.1428 33051.6111 6688.6961 18175.9547 40619.8504 11051.3266 12038.3837 55845949 nitrate_reductase Nitrogen N Assimilation NA Chaetoceros muellerii superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;order:Chaetocerotales;family:Chaetocerotaceae;genus:Chaetoceros; 33153.2179 30785.1861 28379.9076 27679.8343 33363.1263 13285.6834 33426.6591 23929.3144 15206.63 19342.7873 27792.661 11081.562 702193.0626 30153.1392 38558.5395 23515.2884 15009.8392 15009.8392 26763.3063 35364.4464 25015.8752 35939.0081 35765.7444 35926.2024 15339.1196 16459.2262 31363.4719 13327.7916 52332.6183 32087.8951 34682.6647 14331.158 18433.3631 18978.3968 17252.2095 46452.5631 124258126 dehh109 Organic Remediation Chlorinated solvents NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9800.8774 8889.6561 3171.7035 3645.3773 8642.8386 20822.6186 98604.4 15973.1324 3310.0574 3310.0574 3361.0673 9449.1429 4035.3305 9940.9506 5889.4751 3320.2485 2667.6446 8111.5831 5125.1503 8574.9157 4007.6203 11475.8274 4704.2682 3051.9585 8649.3182 5067.8516 5806.1323 89346908 urec Nitrogen Ammonification NA Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 71931.1225 57606.6582 37606.3878 28760.1981 410938.1697 13936.4411 44529.8301 69815.0782 49314.8689 42845.347 118398.879 105315.186 913119.521 386065.4276 87142.1073 50910.7418 122281.5425 122281.5425 35689.7923 182991.6039 86098.3777 105744.4246 146417.1922 83649.9458 44621.2151 102157.9094 91242.3046 63710.4825 166031.9189 140074.0625 104243.4529 37411.8077 60771.6128 78055.1805 50277.1306 87968.6566 377810815 xylc Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 52946.5444 7003.7553 13191.4581 3307.1015 4448.3844 3216.5705 31713.583 12803.4635 6850.7813 110049.1769 9218.4199 10336.7264 6202.9336 6673.7189 6673.7189 7821.3365 19853.5853 18223.0684 10887.2605 30566.2474 7168.6909 4730.458 5935.9578 8878.6452 5499.6236 17332.9829 12482.042 17362.2475 3787.5567 9972.9016 7793.6322 3413.4508 10001.8473 194562390 arsc Metal Homeostasis Arsenic Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 20983.0149 9365.1563 226905.1034 4546.962 3291.7471 8295.909 2935.1719 8379.5859 10736.3047 16635.9441 99405.8837 8196.6393 6483.0228 15649.7554 5201.4948 5201.4948 4537.5945 24663.2322 11532.0068 15329.9925 15719.8701 7115.2527 8579.6207 8135.6882 12757.766 24851.4151 17553.3488 7714.8479 10779.5464 8098.7069 11765.0146 26112.1737 17197.0053 5118.4764 146309965 phn Organic Remediation Herbicides related compound NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 12399.9413 12237.1334 6579.4322 6559.3569 6864.9052 6263.2184 9749.1346 22355.3928 12999.1812 111653.4314 11071.9559 11653.5127 9293.8056 44109.8001 44109.8001 5847.8898 19386.9258 11708.6734 6148.0377 13409.7338 10789.4195 4375.2968 8108.9068 27104.8793 14262.3604 60947.7636 92464.7468 16012.7398 6795.8536 16111.2482 52905.3306 5622.8676 7568.3795 240015434 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 32985.918 10082.1206 13862.2992 19947.0017 4917.3192 15093.0859 9697.485 6565.0997 13421.1542 13251.9302 9356.5578 318139.5436 9111.2581 15832.2279 10930.3447 20318.7499 20318.7499 10275.5311 23135.5194 12779.5323 66129.0604 49586.266 18297.0891 17937.0185 7801.1401 15297.2143 9448.2828 38125.9325 22123.6668 23222.377 14106.6782 34651.9336 13782.3028 8620.2507 48432.2216 119872152 alkk Organic Remediation Others NA Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 5835.8116 206917.4032 5951.9732 43715.8951 2790.3712 6744.0936 5215.7631 54627.1933 4385.5119 11156.1588 4328.6691 5670.779 5670.779 5353.4516 9990.1297 7909.7257 13316.3438 11149.4299 4139.498 12984.5405 4154.2255 9203.5688 24634.4003 11934.7894 5669.3252 6439.0372 6564.4338 21279.1091 7371.1354 3466.8728 74291.9696 327465456 ppk Phosphorus Polyphosphate synthesis NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 11043.8164 4680.4332 6597.2095 19377.0444 16294.5082 9292.8669 8832.5268 5055.9038 22440.581 35973.3105 15158.4499 133451.9327 13738.1934 9623.7733 11727.2637 6756.9527 6756.9527 20788.5144 20912.7002 11438.3645 6304.9951 17970.1439 12875.2625 4279.468 10067.0346 17335.2996 4015.1614 22667.4571 7450.3184 14223.2643 5822.0366 10222.6219 18075.1328 4908.0837 8235.2482 365891626 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 21457.5701 12149.7019 20056.6003 16290.023 13762.4853 8957.8939 14596.0723 9092.6451 11066.1686 13415.1224 9001.5195 240716.6698 22375.3691 18067.5424 12338.618 6014.1484 6014.1484 12108.6174 23804.8368 14551.6181 23088.282 21906.9699 131238.9271 11463.0428 179378.8482 19222.226 161680.1054 28643.5777 8001.665 28078.7142 9241.0973 23552.5633 42468.0341 8426.8524 24683.4996 296180693 amyA Carbon Cycling Carbon degradation Starch Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 12365.792 13133.1214 6143.7995 7241.337 3270.5315 13293.3447 5846.6349 6787.3274 8180.4342 114548.5209 4943.5642 13462.9788 21742.1318 11044.1771 11044.1771 7008.1315 25866.475 10190.6547 7854.4963 20928.8186 17641.4497 8629.7922 7200.4238 13087.5065 6122.7139 20440.6397 17510.4386 26737.9592 5579.1111 19483.1805 18532.8221 7305.4656 5262.2749 158524034 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5897.9221 5919.5113 5344.6786 17074.908 3739.839 6298.092 92551.8703 6170.0136 4330.0743 7745.9271 7128.9467 4820.1776 5249.3512 2833.0696 3236.9408 6442.0015 3649.4841 11402.9894 7527.9145 9521.1103 4546.9091 4102.1412 4915.7601 3769.129 5070.367 39839 cda Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 10341.856 28774.03825 5214.9736 13015.4217 4874.196 6373.90355 4363.8388 7846.9989 7086.6697 4774.6984 141134.9638 6745.0759 11518.0192 4082.6559 4082.6559 5468.5355 12650.6205 8757.5631 7272.0215 11678.7721 9242.7216 6896.9621 5587.4729 13727.7545 3556.87895 19106.8479 7634.117 10063.594 7015.11385 16463.51 14627.7068 116061998 rd Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 243863.7058 13359.7808 6358.3533 10688.9326 5392.7177 6973.3496 15503.4663 54756.2502 59901.5431 23008.5759 15083.9479 356361.8159 20097.6188 22852.7292 28927.1026 15866.1132 15866.1132 10209.4141 34514.5376 10999.2933 13740.3709 20891.5614 8027.6809 9416.0847 37831.3915 24382.4858 21525.6864 85307.8256 33425.6397 20646.4084 9558.3355 24371.7401 23593.4872 9425.0045 84964.7541 89113935 glx Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 19396.6441 15587.2859 26875.9186 111579.9239 77562.9679 60834.3649 23989.5404 14303.0864 24503.4478 29151.3846 14641.507 489401.2207 36406.0205 47757.3977 33529.7456 21232.2239 21232.2239 14606.1362 21344.886 30900.5974 17176.1271 17598.1173 21418.3148 125207.0951 16788.1987 25628.9815 55999.1031 64220.0326 40351.246 42904.7627 32779.9654 17503.6201 31070.5417 15876.2181 19885.9152 315494452 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 25629.8181 12426.7395 10008.9533 7702.7443 15431.9077 11370.5456 7546.2451 18858.5891 20482.8472 11860.1163 631680.3151 33232.7004 18849.9554 9746.3078 26354.2441 26354.2441 10341.8392 86593.6586 13951.4395 59394.8526 23976.1546 21072.7114 9687.1227 9524.1179 16581.4451 8735.9843 52703.3543 16496.0928 22837.8185 16526.2007 44097.9637 13817.2201 13702.9025 534473.4322 330688042 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 24977.9752 9801.2273 6699.1609 5579.9923 6942.4334 2918.0667 5266.6591 7919.704 13354.0832 381408.9349 8612.2502 26103.5742 15014.8965 15632.5224 15632.5224 5797.4247 24013.8376 9738.6379 8773.7706 9839.2974 17723.3401 10781.8487 8296.2603 9359.416 12813.1261 22322.9675 9224.0346 18886.4899 12149.9397 7549.9319 8831.5502 8096.7533 9566.8224 300075184 cysI Sulfur Other NA Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 8315.7813 2866.0972 2756.1553 8368.5444 86620.3715 4097.9524 4097.9524 16040.0842 4521.6429 21220.6276 4498.9568 4731.5818 6383.6601 3109.8766 12010.0749 6617.4861 5152.6089 2862.9519 6058.0297 4109.4777 47752.9267 10055.5159 325662566 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 4_1_37FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 11843.3241 18364.4933 4577.1014 9450.4276 6031.1849 7669.3081 3159.8653 161043.2341 6437.2617 12559.3612 5925.2777 5925.2777 3861.5703 11920.5273 9210.2644 27091.4656 10014.4211 4286.7176 2478.3653 3486.5113 9735.6086 3651.8959 15567.1115 5839.7905 8997.1042 4063.6317 14567.9878 6511.5959 4067.6244 12452.8414 115371850 ppx Phosphorus Polyphosphate degradation NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 20967.2577 8145.3569 13644.5774 16008.5246 75116.436 30246.5591 9250.015 11848.5335 13874.9248 9870.0781 220725.6302 11792.7417 14243.4513 8054.6085 9232.6068 9232.6068 10083.0529 23952.9113 19878.2184 12791.1863 24736.5323 15336.0097 8131.3091 7954.6497 19236.0761 6690.7372 59997.5191 16396.7605 27330.1384 8305.5518 9290.4109 9522.564 10476.0112 27009.4663 153005715 soxY Sulfur Sulfur Oxidation NA Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 10835.5045 8056.4405 11109.2838 103543.195 9827.5255 33919.6334 6946.1132 6150.3605 6387.9667 7126.4444 227762.8978 9607.7312 32966.3959 42740.0868 12980.1793 12980.1793 5124.5148 20253.3868 5548.1809 10053.7073 70732.5393 4870.3328 4440.2644 9652.8233 13108.9596 13108.4643 35543.0087 18476.437 10632.8746 17174.7499 16930.2343 6944.0686 6486.2948 5334.7738 340776996 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 10813.026 21732.4537 8107.128 10009.1639 8841.3317 5674.8619 5021.3687 3116.0347 6002.0297 6603.1566 59476.2482 216016.0578 8254.2875 9764.3667 6360.0356 4146.6084 4146.6084 5389.654 13255.6878 10252.54 5647.6834 19687.4526 8740.4396 3199.7062 4752.9706 13372.7776 5317.0687 21372.1446 7731.843 10012.9747 5853.4185 5958.3034 6651.2527 6231.2224 17258.8823 148253386 napa Nitrogen Dissimilatory N reduction NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 159088.9229 46928.5818 46699.7169 21300.1797 11429.1418 86865.5395 28207.7245 97810.1421 27279.7568 97596.4053 30741.4303 981422.8567 41180.2513 41261.0344 30587.7263 33520.7432 33520.7432 34478.6328 90622.8838 48898.3922 51913.4393 49166.6339 34613.0761 33126.3962 25998.5592 49812.951 31748.7169 99319.3966 34647.975 111090.6939 26924.8712 43600.8787 26400.2127 26941.5966 50686.0727 270508782 tfdb Organic Remediation Aromatics Chlorinated aromatics Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 37345.8686 93994.9585 19769.5112 93370.796 7462.8548 23096.2461 75500.8123 11865.8584 155609.7877 177441.3097 58517.6623 378474.0048 56239.0728 52122.2466 100219.8299 92391.996 92391.996 57300.143 83073.2672 34985.0075 32377.2397 47273.642 20395.0194 19258.7643 65617.2542 58665.8851 28956.1852 88470.1928 60442.6617 62381.3556 56628.726 57509.6669 34766.9574 94115.8883 98258.5328 139003717 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 12346.343 4874.8715 6997.441 13867.7194 11490.9414 256824803 amyA Carbon Cycling Carbon degradation Starch Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 7400.0513 18948.5352 146965.6253 3607.6693 3538.3611 3643.8478 3292.9414 6045.3352 3180.2019 134005.1268 6709.6768 7276.2855 8787.0695 8787.0695 3406.231 10052.1944 6223.6439 4880.1589 7847.2716 8641.2381 6000.9982 4938.7089 9312.7963 3837.1078 22423.6421 7167.7887 10109.7684 6775.2663 6855.9868 8045.6631 6141.891 9229.4904 154162690 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 11769.5063 108399.2256 10501.6094 96224.3651 15600.7571 8040.7025 22810.7337 4870.6118 15942.86 27738.1781 13599.0982 459680.4775 18062.2783 41366.3592 44648.8631 20582.2911 20582.2911 13478.4047 24544.5724 14341.5175 15376.7315 15729.7166 6208.2615 6856.2317 14943.3244 27064.7481 10511.3626 26522.5422 22645.7725 22690.9439 35066.9857 16456.0501 14850.5868 4625.2662 9861.3314 388445109 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 5389.6051 4566.3373 16762.2883 7478.6959 2422.5007 5771.5852 8891.1277 9831.6504 2753.7624 9129.0866 10471.672 13861.1153 3961.483 3961.483 19621.1105 12550.5771 5434.7535 10569.2661 27765.9302 26745.5334 81206.9511 14099.5363 12930.8328 7515.8222 13910.7137 8845.1035 14721.6549 5120.7142 5649.2942 12960.2864 9793.0238 9907.0222 94471091 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8889.5539 183985220 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 22809.8901 285801.4259 9737.8083 15840.6302 12266.8553 26096.171 3098.5713 6880.7072 20383.5158 14047.2287 9297.4655 25129.8732 164140.3917 15465.7506 26197.5503 19419.0549 11244.9624 11244.9624 13320.9631 22596.5441 20304.1291 21406.7698 16788.9864 11675.8731 4270.5345 10734.4371 22175.3335 6377.5683 18187.7623 162456.1169 41382.7991 5321.2305 11154.2137 14907.682 4851.4078 7894.5194 381381687 atza Organic Remediation Herbicides related compound NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 9503.3437 31963.0657 7262.1825 6857.8027 8322.5758 4537.6541 3319.7027 5369.4868 8146.6506 5927.6664 233687.054 9844.915 7927.1944 4588.4845 3330.0344 3330.0344 6145.4076 15990.0741 8147.2788 18611.889 11591.5453 8332.5614 5070.2051 5555.2745 10921.5648 5403.3755 24280.3207 8075.481 12614.3208 5777.8012 6356.9782 7305.3817 5944.2009 14777.5052 292560771 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6093.963 5249.7805 16490.0352 2915.1054 4088.1356 3953.351 10697.8441 4340.7272 80450.2311 4897.594 5871.9643 9531.1709 5310.3182 5310.3182 13164.9771 43972.1321 6251.2277 8177.7539 3554.9671 16431.7309 4141.1091 14743.9682 97217.9334 8869.2526 4644.5331 8754.2263 3869.4699 3527.448 8753.5553 144898973 amyA Carbon Cycling Carbon degradation Starch Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 29219.8827 18502.7918 9882.0631 17749.2676 7668.0306 24052.1909 23506.5614 14258.8001 65613.1583 18331.4403 329843.7594 19038.9263 170092.3564 15388.2469 40118.9352 40118.9352 15787.1045 24131.4214 18264.4193 53222.0065 36780.1964 18495.4812 10160.8353 31066.7003 21472.369 11307.045 35772.8984 25811.8735 25171.1284 9253.5133 17687.7525 27668.9059 14136.6675 30181.9375 171060000 amyA Carbon Cycling Carbon degradation Starch Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 20828.2513 5389.8233 4348.5952 11309.857 2882.7089 10152.6136 7173.641 9225.5084 11483.1067 162161.5737 14084.8317 29554.8886 107627.1913 15336.9732 15336.9732 10432.6289 19274.6906 17397.163 146533.6008 17985.3556 12119.5893 10108.3339 10020.6082 18255.5602 12357.2699 22019.1191 8587.5351 31199.1928 4791.4105 11528.874 15135.194 6100.7246 8905.0255 296426271 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7818.4348 5560.6093 4657.2644 31628.9201 4925.6054 3842.7682 64660.3806 5817.0966 3402.439 5907.1287 4277.9548 4277.9548 16573.356 53773.2486 6962.8718 155360.5575 17220.5649 9253.6552 5364.2645 8936.8249 19020.8117 5360.4147 18198.1337 5761.9827 7988.4432 2981.3565 4261.0827 6986.5782 14288.681 26434.9473 7573260 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. LB126 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4936.4464 3084.93905 3461.3156 4590.17 8860.8127 4774.27 5260.6171 10394.2149 2754.55055 2754.55055 3268.9769 6853.165 3413.7998 4147.4225 2356.7714 6894.4273 1958.8998 8137.4643 4543.9333 1901.2655 2614.5202 5391.8771 2042.3467 5688.8295 58613941 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3631.8273 5355.7594 34593.52 26889.6623 4590.001 47970.7874 5076.1846 4398.2211 2466.8981 2520.4984 17280.8556 3283.316 14011.5564 3025.7188 2352.1709 333919789 alkb Organic Remediation Other Hydrocarbons NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4865.5634 2411.2386 34122.7626 6622.168 166682.9483 106720.2895 11735.3 4264.7719 2936.3964 2936.3964 10341.1417 4117.8218 16436.5987 7995.2161 8224.0035 13160.1773 8037.6818 11157.5774 5400.5221 12155.8394 4978.0269 5979.9198 6441.8858 4866.3415 5406.5715 349700943 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 17564.6535 10368.6785 25772.8908 21888.8065 9685.5264 13034.1559 11849.4423 8818.9236 24839.7173 20561.0457 18069.1868 440016.99 29813.7843 27407.915 23877.0022 29765.5977 29765.5977 14757.7673 28007.0405 17728.4563 629910.8991 21560.9992 23139.4851 11781.5634 12668.4532 24360.958 8801.2858 41663.459 19382.6123 26488.8079 10327.1399 14855.9082 17266.137 11501.5598 25272.9893 37726840 dsra Sulfur sulfite reduction NA uncultured prokaryote 49284.011 2946.7229 254473559 SoxB Sulfur Sulfur Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7515.0109 2242.2701 12612.9825 5376.7251 8454.9393 5435.0363 7862.4307 7862.4307 25854.6703 23209.6765 19062.1071 6294.6141 12786.5983 2185.7514 3171.5294 13572.4946 2194.0758 379067418 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5595.3277 3783.0015 2220.8822 2971.2983 88065.9775 4781.1134 3472.1316 2702.2271 2702.2271 43899.317 4497.8875 4428.2574 7805.8265 6929.9456 1943.0135 4580.5899 5840.3216 2188.5157 3119.106 3649.5373 2328.1451 4965.9312 160896886 cmci Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 25928.0503 156244.1924 12767.8195 8075.5752 12445.0347 6937.7094 10567.2535 39679.6798 15346.549 18793.7123 24225.6314 2010441.3139 10757.3184 22686.0595 16875.4927 23280.1239 23280.1239 12433.9783 44126.533 15958.7962 18035.549 32591.467 9475.8514 10195.0452 38949.1229 16942.5395 25235.0972 48867.1111 25619.0619 30213.2813 9507.5324 17195.4854 36824.2566 10996.6476 19817.2129 383782423 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 86895.1316 28223.7156 26697.1604 44757.2579 5001.6414 21384.6099 18651.97 20148.0917 22012.8953 27934.7965 23279.8895 574240.609 32220.2958 32729.1924 32349.1519 23657.6576 23657.6576 16862.2238 43983.0997 31487.963 28067.4117 30742.5899 40855.0234 18304.8887 15903.7996 24551.1071 15559.1374 142621.949 63462.749 54041.0609 12612.2943 16491.0599 19542.7453 15948.6405 37274.7769 90591777 mannanase Carbon Cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 13519.0667 15465.6686 8951.7459 18159.6223 4944.8938 10915.42 8006.1151 6766.6218 9856.6204 18680.669 6467.2138 305894.5669 12545.9291 13323.6673 12279.2374 5145.7121 5145.7121 10566.6511 14506.9876 12888.2919 12903.3879 11576.7637 17734.4123 6102.9261 6922.9446 27265.966 6631.3808 33557.0882 18771.6027 17996.0718 5872.7896 8209.2799 7943.1168 5499.7052 22251.6695 311741568 amyA Carbon Cycling Carbon degradation Starch Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 4762.37 7697.4785 3361.314 4798.5053 4916.2402 67458.3555 4238.8506 2292.193 2292.193 2905.5768 9614.7937 24636.8366 3746.107 9867.333 7199.7027 3330.026 6794.6518 5636.984 2461.582 6716.7751 2597838 nirk Nitrogen Denitrification NA Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 16612.6571 7829.7571 5829.1805 3751.6542 2912.8102 2504.655 4879.8068 5616.6976 5616.6976 8347.0667 3970.4827 5370.5783 5912.319 6263.2292 6574.0174 4118.2776 8869.3895 6302.7554 10302.1251 2010.4165 3307.5282 3091.0205 3572.5727 16818.7513 334302697 xyla Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium superkingdom:Bacteria; 113221.0555 39324.0206 40658.1763 120680.2487 32019.4178 39926.6397 35293.8924 140468.6262 107427.9947 165161.7749 96790.4883 122193.499 1347477.6482 91276.9693 188455.8118 90044.9263 117530.0139 117530.0139 111571.4412 67758.8987 55664.6157 148499.8387 458390.0986 64491.4424 79306.3109 55571.9002 120807.8177 48266.8045 262654.0828 167350.0981 134632.1638 37336.4405 81356.265 86062.1935 96205.6331 118618.8948 26278708 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 64665.6104 32780.2025 31508.0342 192525.0037 28158.8314 46450.876 35149.0092 62623.8116 46428.6734 74241.6508 41773.0773 1596546.4436 59475.7388 55216.0547 381482.8491 37958.1747 37958.1747 33029.3754 84874.3122 52107.8009 50806.3956 79273.812 72803.333 31153.5211 30744.0407 93498.4834 36849.7699 99122.9966 24276.4647 62372.0866 28542.4875 30925.9831 50508.7538 26729.9239 69712.7152 311032157 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 84433.4552 14301.7249 50524.3151 673147.0934 56340.8785 25572.9801 57298.396 46623.7281 179831.4521 46070.3088 83747.2268 56971.0316 1015657.6966 52170.6439 86340.4482 82485.0568 48866.5629 48866.5629 32291.7019 83309.2524 70638.0768 133526.1225 118115.5822 126585.7784 40791.9991 37967.2761 51619.6723 45044.5237 122012.5106 94006.3036 61342.4508 36765.1124 41622.7827 110298.7019 33353.9065 138588.8192 46307974 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11356.2273 8787.1405 9550.2112 119636.3306 3895.5695 4950.9132 4254.9872 5552.8453 6331.5156 9688.3978 301245.4761 5507.9753 9525.2777 11456.0591 9524.2664 9524.2664 17463.1996 14718.2304 8290.7324 18665.8122 15265.4791 18051.2052 7555.1026 6077.7924 13856.6002 7863.1496 38395.0664 18204.6734 53859.3059 5351.4494 9084.397 11217.7644 17441.2263 44333.0382 254774506 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. avium ATCC 25291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 5031.7651 16087.0501 33106.5726 3240.7938 6384.6111 13962.2906 65913.6752 7066.4711 8129.3869 4283.0722 4283.0722 8355.8095 5114.5668 3563.072 12455.3604 44660.4651 2751.338 3824.2641 116743205 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4131.7075 299821694 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 271438.4518 12145.7721 5028.0397 6291.6975 5258.7258 2498.8532 11762.7744 31559.1991 4710.2763 114160.5397 5849.9323 10317.0061 18022.3594 3572.4759 3572.4759 2989.9214 33248.2171 10996.9701 9396.4722 16741.5566 8392.6071 4476.8117 4496.241 14443.6423 4427.7577 21698.5948 12314.816 13555.5212 5351.6182 6482.1724 7183.8986 4219.5408 9596.1831 160917443 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 51997.8032 59858.0767 13482.4497 7044.8694 23161.4568 9586.3267 8962.7689 11022.5474 11788.0497 10659.1549 17343.1233 23265.728 204391.8751 20998.0455 31883.4908 62978.8147 24724.0691 24724.0691 21902.3544 88788.3392 28676.9724 10388.2536 167286.9388 7486.6368 14274.8389 13191.2059 20752.2281 12367.4956 66748.9131 16713.6448 29186.0351 13875.0049 26918.2234 15307.7444 133541.5705 14185.942 71000251 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 3899.242 27502.8542 3844.0633 2327.1606 7252.4433 4328.4708 5754.8149 3593.0193 57128.5141 7912.6837 4429.1971 3114.6765 3114.6765 3477.685 9905.347 6513.6794 5364.4224 7550.552 6829.5928 4562.2498 2966.878 5195.8828 3218.7052 14197.421 7356.2323 11141.3258 3440.7859 4457.5362 4666.798 3145.218 40286.4699 284042004 linb Organic Remediation Pesticides related compound NA Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 81242.828 76740.0204 387576.7874 35144.3158 16078.4861 24773.112 42045.358 35119.8306 74191.3684 66317.7762 44279.7003 1130151.04 64956.7206 114327.9978 60600.9972 57825.2832 57825.2832 29158.1527 82452.9883 43756.7427 42121.5576 71640.1435 164735.2337 35838.5019 28536.1254 60479.6686 65236.9608 164355.9703 104979.5814 61957.8113 26110.9052 49827.0497 34182.3013 33315.6699 69150.2991 306835477 nira Nitrogen Assimilatory N reduction NA Corynebacterium accolens ATCC 49726 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 11280.9195 16084.8646 9974.4852 8470.9195 7287.4943 10085.6984 12258.4944 11349.1882 39163.3586 220158.1513 16328.4357 16299.7266 9911.3283 5842.3393 5842.3393 7676.8057 18375.8617 9727.2447 32293.585 20813.5952 22050.9006 5492.0161 6912.7393 10935.5499 4557.5042 25158.6341 17378.2682 19635.671 5391.2828 11108.63 8263.1091 7597.9287 18578.9835 258655172 dehh Organic Remediation Chlorinated solvents NA Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 15532.7485 23004.5907 28308.4459 49200.5807 12862.6148 7235.1684 18391.0226 5929.3152 12770.2219 17565.3596 13974.3114 255579.9965 39581.721 17524.4315 28047.1784 10633.419 10633.419 15646.745 33679.3541 30709.9779 29099.3631 22763.4221 19195.4286 10498.6819 10233.608 75292.4476 17060.6625 48113.1202 35496.4845 23086.4407 8500.7156 13547.965 17703.6165 9818.6319 22297.5911 161502395 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 14363.1719 7059.9466 103353.6382 15344.2358 13607.4003 7301.7784 89755.9993 18702.4579 54746.9994 2551674.6118 157692.5713 170712.9258 15358.9615 17740.7905 17740.7905 15837.6488 53553.2627 17481.5139 24418.2243 97469.0493 27828.7936 63628.5337 16208.2472 14972.8399 9196.7549 61501.3608 15903.2798 27653.0213 35257.5968 30807.2427 17417.3925 44416.0595 14073.7327 269790850 merb Metal Homeostasis Mercury Detoxification Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 33126.3088 15326.5937 13012.176 36891.848 10687.4231 11006.2889 63398.9361 8713.4816 22335.1822 19864.1527 14502.0698 384646.9785 22903.4067 32490.6894 21684.6066 19959.3382 19959.3382 19827.935 32922.5077 21181.538 21744.9129 43426.8561 17585.1417 14469.8876 23249.5728 22834.7816 24415.7564 66287.2911 24901.2952 28605.9774 15997.0535 18138.8216 30769.9899 9454.9757 30884.425 332173334 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 78597.219 20054.7446 18612.1551 7535.2785 6795.3841 19774.3336 21581.6531 14524.3051 19470.2141 23912.6836 58991.7581 914904.6178 25228.8307 27914.3031 35565.0752 16205.9538 16205.9538 18854.0524 56842.6367 18056.6531 32848.075 177447.1509 23208.6683 252712.9094 26857.078 49294.7672 21803.5838 170378.2749 41473.9677 29313.6047 18423.618 27095.8842 28731.8401 28269.2746 51951.8892 256645875 ppx Phosphorus Polyphosphate degradation NA Acetobacter pasteurianus IFO 3283-26 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 5679.5882 5019.5133 11405.5152 6320.2694 91921.7025 3516.5659 2134.2609 2134.2609 3467.3939 6402.5819 3550.7051 2555.5268 5436.9937 9711.1562 3662.3805 4627.3779 1761.3265 2159.2512 71368759 xyla Carbon Cycling Carbon degradation Hemicellulose Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 57913.4026 10755.2411 10426.0698 49172.6325 17307.9654 10120.7659 49527.1844 18268.3503 16492.7466 25844.5414 10537.1192 1038618.7091 20060.1392 25455.8586 74984.3832 39884.1178 39884.1178 7302.8611 18710.2797 30799.7806 13121.8156 18616.5304 24745.0451 8920.8847 13820.7926 22655.9338 9957.9526 207138.9602 25631.0787 21783.6683 15058.1237 20894.3979 13915.1043 26547.9454 17327.4299 340786915 tktA Carbon Cycling Carbon fixation Calvin cycle Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 9370.7322 13582.1204 8409.6686 21423.6716 9849.9276 44979.3331 8533.5198 2601.7529 6555.6796 8656.5589 5314.0639 143839.3534 10822.6368 8990.9556 16087.3171 6628.1705 6628.1705 6119.0029 24764.0898 10737.8786 6442.7218 5188.2561 8055.3377 4958.6791 11478.3868 19101.3783 5827.0233 19476.4375 14276.2513 16880.0127 8343.0921 7940.6901 6207.3639 6049.6841 10994.1682 404421345 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 327885.13 862493.6062 363794.3063 1042394.6161 1701251.9776 103403.653 212804.7945 405265.5088 322386.5098 488842.0051 236898.2006 346298.6729 14256127.9754 382226.1125 751315.6709 1034472.4984 496399.164 496399.164 198761.4988 291615.9647 177459.9002 301907.2842 367517.9289 740731.1379 179794.8613 206333.0765 407720.6739 236389.6146 671777.2984 347620.2835 714020.9527 131384.6357 221476.9031 319395.1815 217448.3523 357782.0941 379736008 catechol_b Organic Remediation Aromatics Other aromatics Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 9057.5848 4542.1824 5912.9783 7583.8558 65806.3936 4753.1303 9431.2061 2553.7032 2553.7032 2832.574 10306.6509 5775.6952 2650.7866 5798.1134 6666.6531 3287.3211 9887.4588 5267.3953 5699.8994 6927.2056 4791.3124 4004.0427 3296.9618 324988348 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multiformis DSM 16608 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 11589.0652 8462.2772 7167.9318 3822.2475 3822.2475 4983.6226 10937.0484 5469.9892 5765.1299 1935.0982 3319.1255 5200.9644 257870670 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 7498.6338 5638.5132 5670.5863 16216.3367 6008.5638 5589.1782 6937.2155 2430.5379 6473.2044 14578.2285 4457.7739 150145.9234 10726.0031 8892.3055 9885.7932 7526.5581 7526.5581 5597.9646 25719.5732 13451.4391 20971.5993 17662.57 16360.4456 5003.93 5672.1226 15845.6999 10272.4298 21615.1903 3595.6252 20769.7847 3506.103 7881.1922 10630.0111 5912.7295 12257.8268 228469990 amyA Carbon Cycling Carbon degradation Starch Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 215713.2683 3399.6533 3214.9177 187941.4802 4176.5059 11608.5996 3815.6967 5261.3463 5261.3463 12069.6374 4194.79 5714.8774 4474.2633 10214.4192 2238.5549 11573.2817 3902.4571 9166.0892 7704.9724 1725.6344 3586.5648 3298.701 3384.7516 6230.3127 84687620 phta Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 5139.2453 3852.212 3838.5838 3569.1987 3398.6904 5200.5246 9011.7383 5944.6497 5476.748 5595.3905 3445.6619 7134.3588 2636.5563 16229.3872 12251.6558 6057.635 1880.9573 4042.6435 3865.7409 5783.9355 1150568 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thanatephorus cucumeris superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 17334.5522 4797.2865 5695.3295 15183.6118 10431.7479 4674.3148 9912.3194 7229.8277 15543.8222 14936.3461 9896.3403 300821.8923 14896.4947 14450.8692 54999.7502 8808.6822 8808.6822 11496.5409 11583.8537 8253.5063 11974.412 9088.9404 9390.9367 6195.6126 7307.4973 21830.5414 9581.6588 23975.1599 15133.6401 18096.0465 9706.7909 8088.7591 7569.824 6315.2425 6304.6368 33385657 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7562.635 4500.0209 64109.0629 6866.0918 5358.9175 7041.2917 5502.3831 2803.0513 3798.0484 5792.4595 3157724 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 10176.8905 27140.9605 11660.6894 20761.5267 4925.9944 159209.6264 3570.0397 6509.8422 4113.1544 112276.2794 5901.5695 14500.9085 27784.1618 2023.2855 2023.2855 3144.3245 11935.9787 6931.7779 3950.1381 46482.7395 5601.601 4001.5345 4092.9927 16529.6542 4064.0846 16572.6691 7029.6253 12398.4675 5040.2898 4985.4298 56498.572 6369.1123 10303.9052 384564422 vgb Virulence Antibiotic resistance Degradation Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 5529.3937 5190.0519 7157.6875 2750.8031 8204.6735 4981.6412 6330.8845 2972.4491 106065.7636 4867.105 4960.4967 2651.4083 2651.4083 4504.2044 8077.1007 4856.3867 5398.6095 7717.3335 5509.0322 3319.3152 2744.5069 6513.4486 2612.0184 11612.8024 6625.2339 1995.3375 5113.2471 4968.4941 2853.373 9423.1094 372985287 urec Nitrogen Ammonification NA Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 43611.0864 12551.3048 4226.5538 9949.702 10045.7344 6695.0149 6182.9599 3635.4325 17297.1144 15582.8167 24859.6135 197490.6324 9619.8346 18537.9279 11055.4533 23271.8195 23271.8195 8016.833 38413.8827 10370.96 14482.392 37549.3479 9179.3161 6061.0567 8435.1846 16132.3757 10855.4582 41206.0695 11972.1807 21256.0303 7046.076 29188.2636 20322.9324 9381.3523 20369.5338 291303320 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 44561.1768 11220.1904 5738.3658 10808.0762 20827.8864 4516.1176 8059.3005 5118.9444 3142.4798 10085.8529 15690.5287 16895.275 169687.6192 13482.9836 29745.5123 24104.5358 8092.6725 8092.6725 7064.2103 18769.0398 8470.0859 11349.6601 12494.2586 11500.4682 6284.7378 8523.6348 15830.8148 9376.1481 25947.9143 12587.6776 15273.609 6541.3298 9018.7255 7248.8291 7204.5848 17085.3575 377574404 nrfa Nitrogen Dissimilatory N reduction NA Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 52397.0515 23085.7304 116826.0509 23152.9316 49857.1259 5497.8414 37559.9383 33182.7211 58791.9588 64808.2998 93365.4233 40710.1025 715635.0428 38078.0076 48875.1408 34207.9135 80323.0626 80323.0626 28814.0621 97453.7988 73611.3638 37992.0256 87342.6546 55969.2181 47467.0395 31517.3482 56278.773 31894.0477 109754.3362 42059.844 62528.4841 36246.0914 36765.517 40572.7239 51081.2781 71916.6563 374991904 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 139245.7753 13321.7467 198238.1113 15619.8392 10897.1185 6693.4148 56086.2168 12847.3981 12499.0276 145002.6026 15327.7943 34655.6831 246127.1562 27789.9284 76806.7872 72396.0658 21967.8938 21967.8938 11618.0374 32598.3875 18710.1564 144007.3538 16426.8561 33714.6593 14225.7972 17624.8662 17887.4664 17408.5441 54561.9608 16878.0704 23435.9642 10559.8091 15300.24 22028.0811 13704.7598 22659.2784 126952486 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4903.9037 18217.3304 6574.1676 7963.0654 2316.957 67647.6784 255535861 amyA Carbon Cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 11003.3815 5320.1665 9609.1325 4036.0201 6711.2535 5039.0305 10687.0582 6116.7744 5894.7819 138651.9822 11948.8141 17649.4332 6176.5087 25803.4224 25803.4224 5449.2889 26713.3724 11318.3137 8863.4248 16853.9144 13101.2485 5625.7891 12565.1712 11673.3787 3706.4405 20775.2249 5212.5337 9145.5025 6397.3393 21409.9686 12877.0176 4701.826 27051.9967 323358164 xylanase Carbon Cycling Carbon degradation Hemicellulose Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 12975.8073 8466.9293 12455.5351 19996.1639 126815.7311 8820.168 5236.869 10217.7528 14435.4559 8505.1552 187297.0202 14555.2038 12189.5959 6665.3805 6055.2867 6055.2867 17435.4118 13324.061 7660.6599 15427.5285 20635.6993 15349.7719 5446.1745 6386.224 18462.6559 6321.0652 19485.7156 17665.9577 16402.5087 7320.6677 6624.535 22896.0963 8551.4183 11190.1452 309777961 cellobiase Carbon Cycling Carbon degradation Cellulose Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 7709.8157 14933.9464 5793.8081 3834.5503 2237.0891 7517.831 8056.0997 13839.5848 4418.597 174610.7672 6941.0744 6248.8268 3224.6935 3224.6935 4453.4527 14128.7121 7503.2127 5870.7249 11268.43 6494.8547 3767.2304 3744.9363 9324.4935 7250.5527 14208.1247 8622.6499 9973.8749 11632.9312 7256.4702 5776.6114 3926.6782 12439.694 374322355 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 5250.1881 30825.6996 3046.8499 3339.8105 65122.8181 5641.6752 7498.0311 7498.0311 6709.8165 4280.1072 15082.6229 6165.2939 2426.9282 8312.5926 4165.5514 5321.3338 5311.8652 4279.3049 5304.0172 6104.9641 3446.9877 6388.4728 121707620 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 24960.5135 15507.9486 4347.7167 8904.1859 7694.4273 13226.0541 11390.631 10462.8771 33805.4408 12167.2332 435391.1754 11511.6751 19313.6524 15617.227 14438.1645 14438.1645 13808.685 22657.296 15616.8712 43221.5009 38633.7719 20983.3531 10386.8978 9037.1888 22727.9657 8659.2346 28256.7116 20812.9375 54815.3448 8895.424 13822.6777 17034.3172 13618.9068 15041.3571 157285650 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 9274.8657 92303.6232 4673.7853 33739.3993 4416.901 4760.7758 63388.7058 13633.5213 7168.2667 4665.0943 5083.7576 5083.7576 3370.4005 17606.8519 3971.896 5446.2342 194619.4625 8664.0645 3899.3414 7836.9979 9267.7571 4935.7838 12845.027 7067.6101 47235.1178 4552.751 8506.3778 66719.1548 18140.4498 44145.8517 166714131 hbh Organic Remediation Aromatics BTEX and related aromatics Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 4516.8757 10311.5445 5178.7172 2172.7005 51868.1368 5663.2874 3663.0828 6471.729 5027.3165 4843.788 333830085 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 8127.8726 11260.787 10761.6599 35014.5385 14234.5126 3742.9676 6237.1711 12838.4539 14249.0742 11895.1333 15796.5349 134977.2703 8553.6505 8730.1577 9443.9401 7738.2212 7738.2212 4512.5281 11199.7016 6773.2569 6676.9038 7545.0254 9491.5907 8986.6117 7497.4564 15237.0684 4756.5145 19684.7961 10768.3141 15473.9463 3514.2525 7504.2239 12815.9743 4603.6884 16577.1783 110648096 cysJ Sulfur Reduction NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7613.4736 624472.0508 6204.1504 7262.2005 8048.1699 4028.8799 11330.5264 17213.5188 35630.5371 190838.1113 10683.8733 8560.164 8559.5803 8563.5972 8563.5972 7059.2398 20065.3641 10553.1354 8451.4461 8836.756 12305.6098 4339.8025 5463.3181 8638.3809 5933.0957 17543.3387 3718.3437 9341.1984 3918.3686 8342.7907 5934.9854 5096.1507 105829.3804 377523013 cmci Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 17961.2851 32852.2735 23824.3595 20030.6868 28105.6522 8166.4166 15195.4729 214387.2832 10487.2298 18776.1505 17109.9605 18044.562 311482.8431 19295.4823 22698.8253 31309.2016 15656.4316 15656.4316 12171.9347 29733.8836 14795.0695 18583.4022 21867.6108 12200.3361 11405.0271 91979.6711 21637.2489 12398.8735 73617.2165 79711.7784 42230.3955 11574.9378 14347.7764 19468.6319 74476.4651 18123.6458 29652498 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9390.0755 5578.6478 7559.5051 26073.1902 4403.0704 17565.0405 3417.505 110356.8354 6449.9864 12663.782 9174.9788 9174.9788 13247.744 7358.2306 4790.3337 3127.5995 4875.4283 10471.2531 20543.9612 60972.178 5746.4293 7846.6322 94021.4364 5794.9541 9648.4404 5171.4053 196478323 arsc Metal Homeostasis Arsenic Detoxification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 46772.9477 13657.0546 400974.5576 36233.0372 59605.8692 12567.1269 21367.3041 31152.994 19382.6849 24089.0262 21627.0734 554395.7822 55451.5501 185753.2446 66105.0068 21435.9279 21435.9279 12291.4706 23826.2624 18228.3621 15729.6177 27616.4206 29636.4711 15699.6501 39331.7233 25540.1693 26131.2691 138841.8503 16465.3911 21558.8048 15780.8773 16545.8376 18576.8718 17825.1288 22114.1706 257465712 amyA Carbon Cycling Carbon degradation Starch Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6779.1333 5038.3021 2654.0407 2623.5914 5277.1751 5080.6871 3187.1714 111153.1097 7164.6074 5389.2084 3811.9239 2328.1428 2328.1428 3141.8113 8335.4001 5962.1855 4049.0174 6387.0915 3861.4629 2490.804 3099.1162 5518.8069 2023.8654 10480.0179 6746.3473 1792.8936 3382.0534 2965.3744 2173.2412 5916.7567 227205709 chnd Organic Remediation Other Hydrocarbons NA Rhodococcus sp. HI-31 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8090.1754 5405.092 8183.5863 5529.8132 3838.9979 26325.1644 10109.006 16182.3394 133442.1844 9578.5291 11520.1081 7892.0357 30607.7096 30607.7096 6390.6903 16789.5247 10965.2748 6883.1226 10305.7403 4704.0142 4156.196 46503.8799 10846.7659 6188.6018 439919.8949 10296.5453 11929.7926 4961.921 10772.2116 68948.6875 5537.1186 88452.6723 290467829 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 32815.2272 5751.667 15370.8815 8331.3083 14105.1976 30091.9682 32346.8753 8370.1115 14205.5878 832136.2605 24049.5876 20824.3728 11377.1427 19294.0757 19294.0757 8088.333 18959.9602 10943.015 16404.5759 36845.9267 16468.2187 4921.6576 23871.2876 15833.5305 7657.247 145984.2555 53612.4631 26994.3796 12158.9249 36603.6397 14921.4596 29458.3231 13268.2586 227015885 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas nitroreducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4566.3409 5009.0822 4777.8338 5822.5119 8576.9098 6521.573 7230.4797 10277.0205 7865.9232 212112.9897 3942.6566 11343.6645 5720.9922 4544.2881 4544.2881 8470.8558 9629.4858 6509.6522 52203.299 8558.1324 38415.0319 3912.6974 7932.2906 24725.1036 7521.0566 13487.2298 10197.7837 10229.7827 4212.8802 6137.642 7560.7386 7311.9893 8384.2045 304313314 nirs Nitrogen Denitrification NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 25307.1509 6448.6909 5145.4673 20807.8151 3523.4814 6597.8701 54342.9099 11605.4057 11182.7658 4014.6383 180100.8548 10030.0582 13408.2163 8708.906 5627.9668 5627.9668 5492.9491 19807.5683 6813.9958 7670.781 15386.2533 13788.8491 17539.3007 9150.5178 9317.5574 12895.6603 21897.2674 5775.3063 11177.9133 7107.0699 12526.3826 26233.5117 8222.2196 21622.5633 145553678 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8177.4982 3365.4411 5765.6796 79158.1946 33652.0412 2519.596 2519.596 2643.1983 10548.3461 7017.7247 4489.3661 5863.5327 2974.3679 3090.5588 7326.2416 3569.3775 19282.5334 6432.7329 7325.3414 3567.4009 5204.9845 5638.4609 3195.1051 86285622 xylanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 3952.281 4586.4573 5057.484 2939.9148 4423.8468 4800.8495 2767.7085 169295.5291 6615.0824 4259.4022 4116.4083 2228.9039 2228.9039 3359.7358 9053.4533 4149.2455 6999.8351 7112.8813 3983.072 3948.6384 8204.9835 2382.4001 13355.2595 6668.6627 10373.5402 2522.52 5066.2881 5214.4047 3076.747 10155.999 311112119 ppx Phosphorus Polyphosphate degradation NA Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 8156.7449 6311.5891 11876.0779 18379.6935 20461.3895 10244.3218 5151.3825 3909.0273 10570.2023 19054.643 7067.4456 468980.9058 19318.9658 25997.4358 7566.1604 7470.2612 7470.2612 10629.5946 38669.6963 26372.2037 22278.1356 24742.6198 29121.869 8546.2904 9390.3574 19338.295 9608.5184 40037.6997 12085.6247 26055.1469 13463.4875 14838.4482 14185.8519 7381.3673 30492.6079 114764281 ppx Phosphorus Polyphosphate degradation NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 5146.0147 6369.2629 12982.5554 6664.5523 13980.3672 11747.5246 1427244.2858 4767.4457 6966.9529 13856.0981 4556.9979 14135.3898 5994.949 4528.9252 2593.5974 16893.375 5826.4823 6078.4859 1914.3111 8868.2617 3268.1258 2091.5638 5152.6901 319414045 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 15832.1947 26650.6224 6045.3738 13237.237 9589.7587 7403.7386 2943.2102 7410.399 10228.8557 12404.4143 158019.3681 8287.9828 22488.2574 8189.5615 5652.2605 5652.2605 7063.4061 13887.4568 16170.4191 9323.9186 12304.8493 9682.6838 6267.9102 8751.9056 15792.7449 14878.9543 77361.6831 31487.0514 13392.3199 7025.7882 10795.809 6872.1031 6079.7708 150108.1526 346991454 urec Nitrogen Ammonification NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 32235.3987 23761.3923 7115.4847 25256.0348 12102.6532 18014.1637 16429.1294 20196.8002 19265.5659 8068.0061 152755.2987 779832.9483 41999.3948 16883.0565 16154.9208 16154.9208 10679.1351 35501.5561 26020.2285 15355.7972 24903.8709 13244.3874 14570.0099 23837.2523 19461.7773 19643.895 55098.3776 16944.613 27378.4128 8580.6078 20224.5937 114954.8491 8740.4959 42049.3125 399539451 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 30581.0132 30072.5639 8454.3694 43747.8779 11389.7605 13898.6954 21399.8844 23741.9539 243189.1278 31576.6941 43432.8825 47643.4327 19918.8776 19918.8776 65276.7649 20571.7967 24950.064 30007.3234 8193.9358 5497.5118 6316.6904 30557.0899 31510.5475 34396.796 84611.5914 12704.7313 32406.7271 250600.1949 8528.7564 51040.2993 4302.9392 96667.6361 33391363 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9009.8941 10435.4234 13244.4758 7380.7399 7054.868 4389.3528 18174.9568 4327.1787 74825.1062 6884.7231 4345.0385 9960.8969 8059.9706 8059.9706 5293.0194 235582.495 5926.9521 7642.0699 4621.417 13504.5385 7312.5383 14105.8953 4821.9387 9248.5645 92671.1228 11433.5403 6411.4509 2981.274 4393.3186 4773.8028 3503.5073 376379359 cysI Sulfur Other NA Klebsiella oxytoca 10-5245 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 8307.3986 5500.3963 12386.6815 2673.3012 3154.4273 7094.01335 8755.07095 70827.2519 3914.5862 4392.00035 5871.6234 2778.38575 2778.38575 2875.73095 10890.38765 5798.67355 4280.75325 7920.2437 5966.3973 3335.4315 3278.6339 7536.91545 3677.8673 15438.2067 7123.9964 7332.1032 3330.58645 4847.42645 13467.8989 2666.2514 6398.8355 2598192 cellobiase Carbon Cycling Carbon degradation Cellulose Cochliobolus heterostrophus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 20742.5242 7336.6773 29184.6021 25264.6089 51471.3734 13691.8177 51274.191 87500.415 15623.1848 27046.066 63868.81 1587330.1548 26639.3076 40355.6861 43790.4231 38387.5895 38387.5895 15716.795 74598.1465 36256.4723 36489.282 26226.645 17761.5877 10245.9807 26561.5078 63337.4926 30289.4709 71379.8231 43678.8593 75286.5188 21635.6408 19052.5181 35492.5318 90315.655 47486.7068 209517111 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11224.372 69403.3538 4857.7187 12280.6291 41873.1824 6737.8567 8028.7357 4399.5222 173647.2835 11363.334 26160.7812 8230.228 8230.228 6039.3003 16991.7565 7388.7311 10558.9489 31574.746 9333.1078 8739.3399 4282.3269 18531.1232 6925.2825 36064.2128 6066.8443 22351.3845 7313.2083 11261.4953 56009.3095 8332.0019 18706.0898 780709 nifh Nitrogen Nitrogen fixation NA unidentified marine eubacterium superkingdom:Bacteria; 96100.6927 47154.9666 38438.695 18848.0863 23041.3336 9871.248 14656.7375 19180.2185 11814.5268 26898.8992 23901.2059 217962.6932 10559.7347 77832.7548 59902.9506 59547.9256 59547.9256 114752.1126 42268.5567 44739.2264 28554.5599 26093.4533 16625.1774 22979.0267 19783.0939 21446.9646 23440.0396 107268.7459 49029.5705 19261.4972 14842.4346 23628.8168 23841.3436 15334.0294 31373.1583 258619103 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5410.4354 6412.4049 2039.9547 62102.5406 4905.1679 16979.8784 3707.6268 10189.504 6779.5966 7259.9446 4011.9578 2984.6111 6373.8159 2728.979 8782.1214 8279.3253 6234.0515 3207.3321 3354.3485 3272.2883 2744.7243 7110.6182 119899403 nosz Nitrogen Denitrification NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5434.8706 2083.3365 3676.0583 3499.731 100460.174 4811.188 2651.7874 8034.4723 5789.396 6702.6764 7294.5114 6065.5024 4232.3559 5601.5189 6567.9597 2412.8798 4258.2257 4478.2572 4297.0098 5495.6647 323364720 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 10270.1881 8946.1039 11858.9672 4289.7308 4950.0048 4633.4569 5827.497 11812.1565 5500.091 185420.7505 12786.4709 7865.8129 5924.312 4408.2477 4408.2477 6928.4195 14778.862 16289.4201 13006.1058 11939.6068 14266.1995 5060.6446 4725.8298 15241.2018 5489.7483 23252.9384 16952.0477 14026.9298 8657.702 8050.1923 9228.4334 6602.3639 13582.6599 328939346 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4096.5441 5445.6565 3573.5048 6291.5216 7033.258 3349.3645 130058.1318 8574.1496 4338.9049 2824.0989 2824.0989 3574.9056 13729.9037 5982.8583 10905.7353 6452.8593 4838.9727 2319.2624 3607.2234 12665.2407 2458.2794 12212.34 6398.0225 10656.0728 2454.7007 5514.9417 5786.174 3860.4639 10379.6776 23325733 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 4324.3868 13627.6088 3114.5518 3032.1847 5255.8207 19823.7324 41823.3468 3629.0968 239116.2891 5101.7982 15184.2391 4784.5847 3016.0004 3016.0004 2990.0889 8515.5751 4066.1689 5490.1748 4066.7742 4748.2157 12081.9076 3874.963 9378.8188 4572.7832 10390.1389 1851.0212 8788.4889 7245.9015 3267.2163 291543758 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 32005.9491 60958.8151 7734.8316 8473.2782 15797.0001 36635.5308 6406.8763 10294.4457 17339.2331 9656.7292 452424.9088 12366.9164 24142.2747 22517.7818 14528.7639 14528.7639 9646.6129 20990.5808 13128.6689 58776.3458 22831.9991 15915.0961 7741.9388 11794.6854 34346.692 7123.0391 50815.7131 19772.1237 26352.9326 4923.7521 28515.815 15060.8145 6155.4831 23402.3774 260839753 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 17063.7291 13181.3794 59944.6188 17435.3694 12635.7543 13034.3948 25002.0516 19520.9088 9263.4224 506590.5263 17691.0197 21506.1762 15099.1816 11020.6269 11020.6269 12152.2428 29893.723 24064.0198 20166.0177 20359.3914 16951.2266 8129.4788 11247.039 20846.3995 8688.1136 28503.2385 20174.6839 28805.3843 9570 8434.2359 16212.2807 15143.8592 21946.5829 359424660 alkb Organic Remediation Other Hydrocarbons NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 50586.7614 46930.6914 24553.5986 7277.3308 19514.7461 31783.1743 17222.1479 57012.9346 31065.4691 29377.3755 1644427.9004 24092.9382 127742.6403 21892.2296 19707.4783 19707.4783 17719.8029 48540.7885 34930.3464 45079.4575 38903.3075 35038.3319 30809.3116 30584.5682 42249.2722 54611.7514 87323.6302 75668.9977 66468.3083 13871.8271 42571.4659 35003.3562 42812.527 34143.1939 331694691 catb Organic Remediation Aromatics BTEX and related aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 5898.0686 6697.9728 2240.3739 9983.3896 3117.1922 3117.1922 3324.7017 8426.9146 7683.5596 3298.4833 4297.6658 8143.9434 1659.8973 2389.1304 4244.3196 153870586 narg Nitrogen Denitrification NA Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4425.9139 2860.6893 3309.5433 4231.47 4060.1525 3078.4181 71098.1704 5522.6923 4399.0694 4662.171 4662.171 2783.1108 9297.2713 3939.9928 4844.3236 5874.7531 3207.775 2568.5168 8221.0354 14684.1726 5572.7106 8282.5123 3300.9844 6456.2675 3852.914 5080.3955 134266903 nosz Nitrogen Denitrification NA Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 11349.3977 14273.282 9566.8901 9626.7748 6285.6815 8786.8675 3564.2596 9541.1563 8644.6365 4315.4731 205365.0695 20343.3991 12157.368 7120.6934 4504.6196 4504.6196 8750.4357 14093.2357 10664.3932 46955.7522 14883.9137 15329.7292 5384.4003 5515.7979 14654.4379 4869.1503 20836.7307 7498.3511 13569.6133 5504.7269 7435.7862 7128.8241 6362.3391 14802.0101 184198210 alkk Organic Remediation Others NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 19296.0995 46024.6254 18202.3143 15700.5283 37544.3331 10929.8322 7771.8824 13497.3425 26916.7776 15380.5931 222161.5244 26774.9943 17057.2192 8737.4178 8153.7919 8153.7919 8487.9068 31717.5714 9252.1744 20374.2396 21562.9106 12802.0158 12294.201 11372.7692 21996.261 8988.1223 29595.5367 13246.2474 40061.6133 20351.3171 35420.6245 13066.51 16232.5019 17808.7394 380696310 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 28764.9743 12711.4143 48643.0247 18662.0856 5896.9151 13578.6509 15512.7297 24343.5374 14206.2666 17072.1729 16291.7429 421187.7474 11543.5756 19911.922 42607.0008 13326.0888 13326.0888 23173.9935 75959.7378 15769.1953 51504.3072 84829.6189 39212.7194 18776.6675 20145.2108 84324.9969 26531.1911 56532.5452 17180.3059 34311.7807 8917.1651 19478.6672 66698.7677 18925.13 23321.6459 385738489 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7107.3529 5391.2533 4091.0734 4660.7527 3272.5603 8869.0888 89141.2417 4388.3777 3921.8284 20777.998 5146.6199 5146.6199 4214.2857 15261.8569 8620.1637 10914.3579 19739.466 7058.8333 5318.6056 61129.1632 8805.9015 30584.4934 7129.7072 96789.395 4466.4878 12870.0415 12470.2461 4146.36575 391324258 arsc Metal Homeostasis Arsenic Detoxification Agrobacterium sp. GW4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 452877.1584 126092.201 218304.5672 238700.2534 541293.7501 201381.7128 438455.4577 305397.8466 285617.3412 335350.9128 270612.5911 173602.6325 7293155.458 487331.9499 537152.8017 419448.5928 230353.4689 230353.4689 173602.3964 324912.5462 211343.1884 380652.2101 365292.2218 491377.5322 169224.5855 217488.8672 291861.8052 213249.4491 627244.586 302395.1006 307253.6696 282863.7144 233433.2344 216109.7378 179565.0077 525988.9407 89347083 dehh109 Organic Remediation Chlorinated solvents NA Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 35335.847 26042.2147 15521.2323 8761.38 7105.5034 3389.6203 2331.0642 17514.4375 8971.2338 6017.6123 72565.1911 9486.5261 10629.9531 3203.2406 3203.2406 4399.3994 12343.0012 8198.3882 8363.1855 16672.2116 5818.9491 5161.1186 4905.3348 7287.3921 5161.3737 18413.4131 16423.169 12169.5352 7749.8183 9020.3767 7232.3679 20938.2668 10768.8009 374984292 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 48950.9349 352621.5454 100136.8166 51488.9474 68049.815 74491.5422 29183.2883 40981.0371 28222.885 29526.9189 31744.641 21878.7764 841645.9347 41750.6105 48882.3773 50928.9649 34133.8671 34133.8671 26451.5523 48656.6051 38960.7849 26860.8538 63259.3057 46310.5971 21042.8955 41318.1307 62802.5988 23381.6644 72173.8423 72098.8677 83542.4322 34894.9073 41268.1422 34177.1576 16847.5058 36515.5105 58201588 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrosovibrio sp. FJI82 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosovibrio; 3765.3603 7378.949 55110.1103 6828.2308 3997.7538 3219.2727 5605.3935 25742.1745 18954.3518 75970.0175 9035.9145 31823.4346 34324.4411 2413.3317 2413.3317 3811.4479 12802.2817 7222.1809 5595.9659 6959.9435 20124.1998 4024.3666 10095.5846 13467.6334 5122.8569 15751.5794 17327.1692 8599.2709 12175.3636 12272.635 5814.4938 6765.1287 26308.4403 146188541 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6090.7262 4599.4395 3549.1353 5723.405 4823.6745 2270.6371 166429.8171 6113.4716 8147.011 3216.8647 3216.8647 3940.1437 9860.4171 8408.744 8012.4825 8233.6967 8381.4869 4450.507 3978.1597 11503.6741 3643.9506 15834.8092 10820.16 12079.7965 4161.3945 5277.1655 6218.6311 4845.3867 8712.8177 254819182 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 24262.2974 5897.4769 7801.3715 9392.5947 19472.6577 3794.2407 29140.0133 6527.4195 11284.6107 12046.8824 7999.8135 109693.5638 6195.0193 12069.8539 8357.4519 5884.9211 5884.9211 18014.1446 17121.6167 7287.1017 13108.7338 23057.4973 11927.4732 3987.7189 6942.9286 11175.7236 6443.9187 41701.5603 9385.654 15336.9433 12636.0042 12462.8172 8262.1251 7427.0264 9295.9132 110825138 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4695.011 7672.5309 3824.5874 7486.1141 4474.1476 7776.4098 71330.677 4938.4718 6369.6403 5661.3707 3163.3453 9473.0544 6551.2592 5959.8138 6723.5745 6539.4624 3175.5447 4109.8496 8752.2108 12098.1375 5009.9232 10994.9078 3317.8283 6518.2244 5373.1958 5866.6907 13874.0022 90903257 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 75474.5276 12914.7434 972482.1793 3446.6841 23383.0448 15214.2542 7027.8028 71526.8644 76845.9539 494934.578 48342.3819 4348.7353 5623.2269 25678.9071 25678.9071 143388.4915 407424.5035 156807.3519 207462.4021 32547.7609 854525.2772 95111.7332 149038.8657 14507.2356 77221.9525 152825.7769 157867.5769 50355.8544 18730.5733 291724.002 73372.043 142418.8763 409806.561 16503486 napa Nitrogen Dissimilatory N reduction NA Salmonella enterica subsp. enterica serovar Typhi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 7339.4203 4976.6692 3099.4569 9805.6532 5528.1868 5120.305 6614.6701 6325.9266 72973.211 4890.129 20931.6233 8777.6784 25688.649 25688.649 70826.4757 9046.6798 6481.5678 6719.1376 4379.8207 6425.0424 6943.3357 4463.9559 40445.0947 10432.4113 7958.4812 3248.931 8757.3253 6403.7357 7747.7377 6318.376 304359 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 47484.5836 119543.3312 13432.6527 9957.411 71490.1985 74840.7536 5501.8094 14370.9894 25686.1319 20474.0813 434363.1916 19665.4991 19990.4725 150437.7055 22016.492 22016.492 19035.8628 27998.9423 25959.3124 27615.838 146333.8562 54514.1712 17190.037 22555.6346 19356.5285 20415.521 54928.4748 24325.8598 34898.4536 11932.7393 17183.5212 27993.2639 12880.7263 33435.2194 45386223 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 22399.4236 11951.2717 12754.6963 13520.2805 7413.5829 4649.389 9067.3458 32098.8289 16619.9732 218581.8653 12344.7996 16757.4195 8288.4738 8451.0565 8451.0565 11850.1534 18412.1115 11623.3412 14893.8819 14824.8133 7944.1337 5735.8697 6864.3362 15798.7608 6272.1367 23404.1049 14884.293 22845.4129 6272.3543 11204.1223 12390.5368 6214.8194 13581.8674 328542610 tktA Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 24261.4876 15556.2962 17708.2822 36306.7828 11754.9173 16574.1531 12731.538 35378.2688 10876.9639 18514.4987 14481.1483 347183.5309 15788.7161 20576.0063 19953.6644 13816.4075 13816.4075 13412.2845 28605.1179 15603.7961 562342.1649 43264.5464 35655.9399 9844.765 103653.2457 22078.3483 17980.7912 46680.2251 17955.7512 31086.2275 8456.4382 20219.8387 16281.3885 13756.8741 21673.1056 313894164 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Veillonella sp. oral taxon 158 str. F0412 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 158; 10830.3236 25401.2757 6415.408 5906.8647 12187.5014 5594.9104 9446.3872 4018.5918 9502.1533 11625.8568 13971.9954 248304.0497 12285.067 16387.3504 11009.1928 6894.8666 6894.8666 6131.3908 21009.0361 10573.1936 21324.8123 11098.5832 7883.752 7687.5718 146649.8793 16943.8651 64704.5891 26812.0069 23387.0165 16843.4909 11848.9205 11451.9366 8321.8665 7147.6365 13545.6062 255957259 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 30277.2834 27923.8442 9645.2645 40695.7596 480813.5255 41655.5157 367981.9792 24235.9923 121627.8974 99292.0254 359139.1524 18158.6814 27541.3534 54973.5721 24265.8297 24265.8297 18601.5292 31927.6432 14372.3963 103487.017 38085.0901 24859.8719 13701.0064 27797.6139 11421.8746 141303.2902 69968.0795 21276.3641 32528.7469 41751.906 33766.2289 21470.218 14205.4027 22332.2604 213968723 atza Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 15571.581 11328.8178 19314.6972 7609.4291 5916.6744 4003.3461 2952.3203 3414.6203 57528.2653 5612.055 5754.5443 6268.323 3329.0162 3329.0162 4654.1364 9980.2308 6494.088 6327.9024 6457.6749 9152.9469 2226.8636 5604.3442 6437.1298 3033.4755 10371.7774 6108.0652 7006.8699 3447.2528 3033.5726 6506.013 2516.6384 7894.7761 348689136 Sir Sulfur sulfite reduction NA Phytophthora sojae superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 8894.2909 11556.6453 7123.3285 10147.9908 31960.9534 13761.1435 3932.1026 7672.9816 4863.6027 3056.4627 121677.6545 4434.1152 5320.8669 4343.8415 3951.7895 3951.7895 6563.2512 14014.0073 10787.8313 8541.0283 10024.4825 14502.4972 3981.273 4484.6165 13870.6363 5433.6041 27550.1973 17175.2048 10564.4214 7625.7157 12110.9921 6588.5219 5272.695 8484.0274 268311646 poba Organic Remediation Aromatics Aromatic carboxylic acid Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 312259.0828 40017.8791 122594.5017 138576.5465 184203.0192 66200.006 339075.7001 180735.0343 117346.258 183507.6018 160278.2752 201047.4726 9316126.3607 288612.8974 354796.2344 311980.2651 181793.3436 181793.3436 93611.6578 165033.2829 156078.7644 255047.3975 174956.5073 235210.4611 105290.3805 80458.3242 128018.054 293013.6119 315107.9671 88325.1345 150569.2626 68308.9518 230828.957 120761.8617 102252.9493 217815.2461 357079865 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38393.4393 37372.2711 6022.7469 6664.6534 28287.2909 67238.9862 60741.2421 20613.591 63466.9522 2376761.1411 54810.6651 23518.4902 8504.2009 12965.225 12965.225 8501.3968 23176.1106 23947.4022 25827.704 14800.8642 44037.6543 24084.9316 8835.5404 19588.4074 20052.8088 99490.7552 20434.0864 18894.8554 21355.1636 14138.1229 14771.1692 8043.9378 15700.8434 326574308 ppx Phosphorus Polyphosphate degradation NA Moraxella catarrhalis O35E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella;species:Moraxella catarrhalis; 7703.7397 5014.2579 7560.3589 8008.8814 15994.0291 6669.3984 4834.5712 5957.6461 6314.8797 3823.8848 125812.0018 8659.4242 5985.6358 2126.4375 2126.4375 4740.6973 10746.2447 7031.7842 8049.9487 9559.4293 12891.5583 3449.0974 4290.5537 9700.0981 7883.3802 13628.7878 7301.5868 8430.1295 5608.8544 5207.1156 6242.7415 5159.9802 13860.761 332524022 amyA Carbon Cycling Carbon degradation Starch Streptococcus porcinus str. Jelinkova 176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus porcinus; 8110.9965 5052.9151 3269.4003 2012.1488 6311.934 6472.5778 78979.4311 6624.8379 5435.9391 2379.1057 2379.1057 5471.6668 10578.5523 8189.9008 6393.684 9303.3317 7513.06 3730.73 3767.1624 8037.6842 3578.6847 13379.0066 7186.6673 9998.8001 3484.9445 5555.43 5636.2272 2502.5205 9556.3664 357403379 gdh Nitrogen Ammonification NA Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 190568.841 38659.5085 309635.5939 82092.8673 13797.7297 11146.001 12770.3613 6479.928 19285.0173 76982.9864 25483.5264 391364.3811 27774.7229 43008.8753 24713.5298 19295.3351 19295.3351 46138.745 60737.9968 73637.2875 15003.32 55324.2953 38602.7787 13516.7562 18727.6195 29695.421 13385.9851 38169.9309 48721.5424 72876.3718 14959.6532 37252.4048 23618.6361 14235.0633 17969.5634 171463835 FBPase Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 4660.0159 7543.2752 70596.1776 16092.3304 10030.8856 5457.2293 4658.355 3412.2027 17293.2083 3840.0344 80634.9542 25341.8024 8696.1078 12741.3587 11093.1826 11093.1826 2983.2395 139445.5631 11158.9479 7900.9199 4126.7628 11537.4714 4563.1906 3716.6949 13783.8453 7702.9807 14239.3317 7976.0789 13734.2911 2779.2266 5386.8186 4111.1808 111073755 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 37254.7299 59575.1686 31068.1809 54669.1276 26419.1387 5416.0972 18317.6517 102309.1669 58412.6485 25012.8232 32478.6993 29234.433 1218598.7049 33220.666 78102.9089 106462.3973 25078.2953 25078.2953 28713.2825 113072.7697 31122.396 153039.4501 30584.9839 28228.0576 27236.5721 21488.6092 36256.4356 39538.4751 73393.9369 53878.6743 64441.3837 19866.5203 41991.117 39883.4524 22662.3146 21550.6268 262259653 PRI Carbon Cycling Carbon fixation Calvin cycle Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 5859.3899 4354.1529 15555.6946 4197.1044 79108.4621 2307.7042 2307.7042 6064.6888 6214.7103 2629.5727 8882.9205 6960.6812 4715.8612 302395670 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 4237.8253 11163.0587 8040.5283 6129.4026 107259.6477 7244.598 2367.7257 2367.7257 4384.4087 6066.1109 4777.8249 5228.2259 5013.6367 7624.0595 4616.8678 6594.0893 4411.0187 4876.0363 154159546 fccab Sulfur Sulfide Oxidation NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8439.4138 38864.4978 6733.3395 18815.5082 5197.0607 9656.5474 4996.3041 4267.7134 8787.3669 17522.6313 258357.3596 29962.4934 11257.1392 25263.8849 11512.5026 11512.5026 84806.8121 12745.1299 7955.7249 19548.0884 7855.7712 4600.6445 4002.9354 11686.8256 15656.754 5644.2472 21871.3819 19537.2406 17265.0071 3752.6786 9812.4079 10824.412 3679.1151 189419921 ppx Phosphorus Polyphosphate degradation NA Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 138018.3838 105456.818 51096.1583 40831.3245 3803.0167 2555.8216 21696.0889 4298.1876 5500.99 7448.724 3528.8023 3717.3227 2169.5849 2837.8832 3048.1 3815.775 126179880 nifh Nitrogen Nitrogen fixation NA Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 23815.9175 51112.8683 9428.277 4441.2881 5929.3617 6037.7549 20819.174 18122.2607 25549.7092 81685.0086 100592.4865 10255.3076 21357.0736 27014.1788 16329.6998 16329.6998 6031.4095 17279.9188 17940.777 6355.9143 24244.4963 16416.1934 7765.1315 13142.414 12608.7499 6715.92 43834.1041 18117.3458 24415.1182 6822.8989 10067.8827 9298.4811 10020.4708 11575.2871 20278843 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4566.5997 3480.0639 8869.5652 14141.0174 25399.5607 2262.1857 1842.9023 2709.5029 164425288 glucoamylase Carbon Cycling Carbon degradation Starch Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8544.38945 27687.94285 12332.75055 30811.57555 8969.2453 6426.36775 7656.2121 12470.33155 6669.13075 182023.23445 9955.9401 5713.45015 5713.45015 8727.0906 15783.78565 11806.85995 5708.44565 8749.886 28990.52965 5401.2098 6556.2534 23347.237 7628.4583 21332.4998 20375.5931 8101.5934 8189.74155 16218.64965 375145954 xylanase Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 10809.714 6453.4066 4443.9692 5207.8568 5832.0563 10079.4772 22060.6591 6608.3756 3952.8421 130664.4944 10232.5758 9617.6519 13154.6295 9220.5312 9220.5312 5327.5185 15838.5809 11370.6492 7835.3781 20050.3563 23770.8714 4743.9938 7741.8989 14426.035 33719.9638 43595.0532 11233.6675 15690.6109 8662.8276 6482.3385 14268.9797 5098.6802 9835.6893 67154492 poba Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 236818.2687 37215.1443 66453.5543 35807.9821 32289.2749 15890.0374 39869.5829 88127.8584 42113.6912 55936.0925 74498.1701 78166.3875 1735893.8561 150808.0304 48945.056 112567.1696 100202.1359 100202.1359 62637.7923 104529.2345 54389.6297 194389.4541 141835.4019 75539.5067 69097.2381 88437.2924 60719.9368 138090.5034 121553.2469 71600.8864 122617.9566 52900.408 135251.7593 91646.4069 54393.0304 237484.0419 149809645 SoxV Sulfur Sulfur Oxidation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 22259.1892 10320.0898 15237.0759 10754.908 9381.9641 13003.9381 14196.2687 14929.7604 20588.5834 9522.4156 763000.137 24923.7172 13864.9529 11272.476 12080.7494 12080.7494 9742.1728 57302.331 17344.8608 85560.0825 20532.944 21532.5811 7571.7443 33752.3052 22876.6973 46817.2802 21508.7801 14969.1504 18395.6695 8009.4512 10100.4107 9967.357 7470.4012 13079.6118 334880735 terc Metal Homeostasis Tellurium Detoxification Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 57009.8577 333443.8311 45593.3334 46380.6237 29826.2403 44831.8896 57707.3192 180672.0369 132392.934 85841.5154 43956.2706 1088115.7212 55479.0553 54316.4862 51307.431 254621.0061 254621.0061 43289.4758 118572.4329 50104.7447 97648.2786 181661.9668 163492.3947 38197.7709 42187.508 265321.535 54508.0185 153243.3333 119617.8907 53771.6553 36087.9413 36950.0151 54784.9609 54105.214 78269.1195 338209613 amyA Carbon Cycling Carbon degradation Starch Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 4017.1112 5872.064 5448.2896 6593.0153 8353.345 3711.5978 4813.6227 7694.5462 6800.2003 3114.5841 99290.2854 7281.9444 8935.7136 3530.0484 3530.0484 4778.2447 9639.1399 8577.9887 5016.6346 8532.8028 7751.7088 2962.068 4197.0527 10824.5437 4630.6688 21470.3378 12524.549 12728.2632 4097.205 8135.9681 4426.2904 4933.2464 7654.497 77378791 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9016.0987 10978.4029 7688.1439 3491.736 8838.7333 3791.7492 19419.4848 11405.459 8256.8044 95743.4375 8892.7412 9137.2577 14197.8428 3848.8638 3848.8638 5204.7948 18309.4464 10299.7109 293263.1542 14615.0909 5159.8928 7237.4391 4457.4073 12175.6426 3777.3369 18030.1988 19165.9268 8951.6248 3984.9571 5626.7969 8775.8863 4024.1108 10246.0173 251846598 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 28884.2384 63009.941 3786.4069 2402.9192 327189461 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CNPAF512 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9523.6308 2503619.9346 10804.2601 2954.4316 1971.8769 7118.2362 4977.3585 5982.4564 170374.2471 5292.0138 6588.5031 4047.7276 4047.7276 8041.1699 12480.1283 9688.0325 5352.0181 59180.3518 8336.061 15940.606 6569.6547 10258.8707 13400.0884 17409.397 8775.4537 8295.9641 6347.5942 4773.0983 14761.2061 4518.3215 11961.9692 238725435 amyA Carbon Cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 9368.429 975906.9294 53130.1516 4320.5882 19142.3164 11387.2199 4571.6295 3954.0085 20974.4561 5205.267 4000.7663 11972.0993 29334.9723 20831.439 20831.439 70258.4148 12751.5543 8355.3087 11375.017 8288.9748 7253.1075 4396.5593 18895.3436 21037.5062 37542.1631 8925.8079 6093.4552 6432.8341 4864.8864 8409.6679 24986.233 260774042 amyA Carbon Cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 7560.348 13882.4977 14418.4197 7476.1126 15071.4325 10475.864 7875.5777 3565.3153 5440.8395 8455.7863 5589.7706 231094.7207 13089.3875 6744.9077 9128.1292 3564.9647 3564.9647 4238.8698 14120.0981 10532.1327 5208.9634 8889.1063 8579.9809 6890.823 5332.9399 11882.2183 3506.6605 19350.9755 13870.132 11723.2017 3935.2283 5862.2111 5447.8769 4702.9849 11812.8937 82618383 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 35014.9647 11959.939 22146.6804 34142.3548 32146.1822 10590.7639 17908.5225 22482.1129 17532.452 23967.2874 27667.7185 15271.05 565402.826 47309.8715 29227.1518 24696.6824 15344.6179 15344.6179 19101.9118 29196.3946 20717.2156 64268.1759 24996.5388 33092.5942 13625.1874 12137.0498 28352.9001 89529.6281 46523.5847 15467.6102 33011.0673 16455.6852 12718.1149 17709.1095 15213.2035 42084.2518 357053283 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 4186.2814 2803.9282 2083.3949 3486.7132 3475.4591 7520.9999 3395.9397 3395.9397 3467.9983 7975.7879 3733.6035 11147.6837 2429.2337 4955.484 2912.201 3957.7697 1948.9868 3923.0662 4502.9083 2049.4958 5138.6127 71728342 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 4854.1523 172228.6683 296131056 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 8990.2584 43278.6663 22872.1086 6262.5684 84448.361 3492.5244 30453.444 3562.9928 77623.3836 6374.87 8457.082 9236.1737 7889.3473 7889.3473 3505.8653 10058.4214 6309.419 5096.5789 6520.9737 7558.5044 27368.4986 4093.8762 27618.8041 85051.488 22599.8758 57365.2376 70804.1766 3849.4071 7570.6392 6145.9111 12120.5266 5695.6706 88818629 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 7628.5129 6449.8502 5939.0434 8099.4921 5322.1387 3304.9957 6645.7344 14624.2614 3581.7319 178337.557 9713.7454 5951.0459 6279.404 3574.6069 3574.6069 5643.0108 13254.1798 7790.0862 9798.7255 9398.8639 17535.1406 4867.8063 4730.794 9012.9156 4422.2023 16626.5253 11915.3515 9476.0087 5049.0899 6361.2298 6486.5234 4509.0846 15636.3213 386825790 cmci Organic Remediation Aromatics Other aromatics Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 4673.6111 6070.6202 2765.4315 2872.742 3768.9775 2889.2988 93769.1734 4018.6538 2131.7347 2131.7347 2895.5676 7311.5902 6155.7895 245679.7101 4797.7619 3713.3824 2816.2713 2842.8905 7932.4464 3535.7152 10666.4047 8246.6786 7364.6084 3512.9872 5416.5883 3957.0992 2969.0891 6219.4676 264675172 amyA Carbon Cycling Carbon degradation Starch Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 178204.9336 51068.256 76667.5239 70755.9728 14153.8752 23385.0525 106293.7924 37192.5228 62296.48 89999.1606 85146.4165 1219885.6668 63623.3216 666464.5461 101243.0419 113459.0278 113459.0278 43922.9524 131137.5701 62155.2961 74143.663 100276.6563 64183.3412 59859.3979 55516.6225 110288.0148 54062.12 178884.6899 46273.649 88830.3249 39094.8299 62271.1983 85404.3532 70315.0779 106958.5911 126704210 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 106596.0411 36221.3333 33679.5483 139639.6673 17461.1044 74786.9866 46940.5188 70481.7152 40568.9456 191067.5944 52138.8416 1782749.7441 67941.0513 84695.1168 232767.8907 72531.1616 72531.1616 34962.9043 144647.3661 60195.4487 61594.2414 133124.3944 97669.2041 71117.1558 73088.435 94790.7709 55322.9012 334024.4437 81542.7538 115051.6554 40278.8057 96597.9041 117721.7681 74208.3621 181317.0662 301319417 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 119897.2937 41189.7411 49675.2266 635137.8996 86729.0245 14245.2063 58650.5208 44737.7375 33256.4172 124773.6331 95167.7215 50761.8652 1356418.7052 77720.4346 297856.954 95867.504 69303.495 69303.495 36752.0294 95021.8897 54766.1159 69132.211 120389.7168 106405.9965 50370.285 47494.3019 81101.2529 54426.6476 101057.6012 96760.1416 71181.4018 28862.1293 48246.8532 65255.7569 62956.8386 90908.8427 302557276 rgl Carbon Cycling Carbon degradation Pectin Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 166988.1766 78119.9782 443708.9146 16687.8038 22685.4335 18403.1306 30450.4683 83815.8596 79371.0285 32134.5206 46698.6958 70336.1215 1347019.7323 58145.7396 69290.4883 181932.5735 77455.4123 77455.4123 48685.4752 87268.843 64042.2587 181159.6918 1267276.4572 37569.1683 53960.7977 58433.6522 53172.1429 74373.7024 117005.2834 51274.2584 102838.946 44731.9293 55400.288 59833.2756 41187.8995 63770.4534 256362487 glucoamylase Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 7254.492 426835.4044 119734.1212 4578.8696 15493.7198 3525.3594 5589.9014 8385.0112 3172.2696 5010.2492 4237.6112 115691.5085 18313.818 7256.4167 9056.3965 5294.2584 5294.2584 2728.5377 8864.7584 4392.4453 13759.67 8375.128 8986.044 4405.845 14923.9094 14224.1602 15267.3365 8612.3208 9116.2849 3043.0484 4755.4442 21448.1194 2682.9437 5625.232 269219875 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 33626.0355 17603.2691 67696.1652 120430.4718 20988.1624 333916.7943 26698.6616 68202.6845 26765.7996 35321.9797 34822.7593 522962.658 46476.5442 37267.3632 64022.6603 39739.4347 39739.4347 29763.4043 56358.8023 31951.4027 33304.4758 84632.5287 34528.8526 54888.2708 24173.9839 38229.3973 59703.6086 97903.234 58528.8598 48723.2475 24395.404 115030.8594 52022.8716 33858.3539 45176.4236 146313536 terc Metal Homeostasis Tellurium Detoxification Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 9164.956 8238.4359 8044.3771 3986.4436 40778.1983 5656.9387 6909.7665 6675.6174 5133.6372 175506.4676 10172.7016 10364.6649 7964.8608 2966.3063 2966.3063 6814.7309 12430.7134 13297.2209 10119.0422 11215.3077 9774.8388 4030.4247 6429.8106 15110.3283 8011.0485 18647.1801 15271.2526 14492.2896 5494.0907 7972.4578 7504.2479 4673.8242 13587.3578 158523504 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 27677.1261 12985.392 14903.7941 21479.461 17555.4956 13438.5795 94963.4897 20717.8059 16943.468 17518.9834 24029.3284 11923.5829 687645.9914 38938.5501 26188.1405 26769.2435 22940.4195 22940.4195 16975.1587 31163.706 27943.5491 21253.4821 22196.7112 28255.4908 10894.6998 10733.9864 37856.7924 19028.4298 47797.3072 24316.5819 47636.4401 30365.7622 16167.4818 24941.7739 17513.0845 30406.5436 49646009 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 12510.457 10787.442 10341.1102 11886.2739 7068.7223 6530.5015 6138.1681 8418.8344 15697.5045 15635.3697 8054.3928 15476.7451 15115.1139 6856.303 5429.0728 5429.0728 8778.4056 17921.3428 13966.7707 16142.4602 17233.6639 15921.1585 6316.9267 8375.7082 14275.8869 5648.5879 31144.541 15573.365 17468.1891 8728.3646 11287.3154 9019.0639 8253.4843 24681.9815 365422184 urec Nitrogen Ammonification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11278.0835 10131.9061 9010.52 34657.3577 7450.7241 5820.2461 6440.5226 6376.5251 3608.2038 106661.8274 11068.3069 5329.5436 3674.1916 3674.1916 14102.342 20169.2647 15904.9419 9953.3071 11437.6199 8147.837 4477.1331 9051.213 12672.9758 16380.7704 9723.6222 27276.5203 4273.8394 6578.7036 7362.4851 6259.5036 9818.6005 83404780 nirs Nitrogen Denitrification NA uncultured organism 11832.2854 6250.7668 5524.9515 29120.3653 10142.831 7206.1247 6434.9605 9935.2662 39737.0995 4680.3953 238520.5687 12906.0922 11814.082 7601.4329 6180.2495 6180.2495 9328.5894 16327.0644 15866.9192 49634.5278 14769.6333 22487.343 4722.9021 6352.6489 21480.4997 6035.74 27165.9408 12217.9652 16987.4534 6576.2549 8340.3914 10246.7065 6962.2273 27268.7223 386395203 terc Metal Homeostasis Tellurium Detoxification Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 486180.9494 37023.3256 3995.9075 570662.6783 5590.3768 5288.5501 15423.9468 72668.3586 9401.7436 7410.0343 21910.3452 32779.2428 32779.2428 447704.8121 184837.5393 5685.8627 136378.6115 5740.3569 24472.0887 11941.4422 16429.0118 6959.8248 7663.5336 9349.8792 4918.45 209997.7004 15834.3935 361728.7861 13422431 cysI Sulfur Other NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 53636.428 965135.0901 27618.2203 91168.3433 66741.9762 36488.6534 140401.5646 46998.3542 29729.5206 34376.2592 269679.9247 40544.5338 1095036.0004 61186.2465 69980.6339 62050.6723 39102.79 39102.79 36980.5554 86031.8563 52586.0263 47687.3344 85533.5648 81010.4762 24913.5717 38255.7452 51809.0842 42032.5514 115912.9706 70013.1722 76245.0623 31645.354 66978.1046 42111.3954 38991.7491 67794.867 375100932 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 7118.2867 6961.7261 2574.6857 12733.1233 9551.2477 3188.7537 7428.3521 31593.2639 31593.2639 18823.9844 7143.0845 6036.7762 4485.3039 4512.489 7301.6474 15217.8507 7673.5903 21270.171 3436.1313 27265.4446 5200.8621 3920.6719 13108.996 119469627 ppx Phosphorus Polyphosphate degradation NA Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 12028.5969 8623.6686 10395.242 9641.8964 9262.9922 9741.4539 10051.729 11687.5703 26458.3026 6899.4691 4117637.5207 14110.901 11325.808 9855.0152 9913.1461 9913.1461 8560.0347 16821.5038 15717.4317 41878.1767 15320.1323 18844.7452 8005.5019 9050.8443 11813.2822 12291.0044 73734.7428 13977.9135 20221.8352 19588.9622 15600.7613 11362.0972 7157.9223 20558.6184 29827104 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 5304.8139 2180.0525 47357.4403 86935.1896 2381.1613 75502.9601 6174.6639 3655.4425 2494.3146 2494.3146 12557.5261 8661.7922 5759.0172 4721.8508 3293.563 3983.1609 3033.5268 3645.1584 5094.1582 2282.5855 3361.0277 3323.9564 2236.8125 83316528 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5064.2992 24087.0216 9284.5475 4263.8028 99926.8777 5619.8382 5525.0734 4027.1231 5361.167 10379.7176 3400.7599 3098.2905 336320384 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 18808.4691 36534.0602 7309.4348 20374.5976 312303.7196 8591.8366 20506.0376 10762.4219 20291.0134 11243.2888 276502.5686 46755.3728 12405.1424 16247.7781 11379.6457 11379.6457 7075.1893 17888.1292 17947.0131 6187.3449 7546.8549 6975.8929 35561.7288 21185.134 32962.8385 9453.706 56620.4679 16678.7534 22987.0963 7685.3811 12411.8665 15473.1226 10990.026 9887.524 7769068 arsc Metal Homeostasis Arsenic Detoxification Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 5273.9149 4726.7733 69726.0279 220696777 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 40147.4072 37948.9817 7975.9211 19341.8094 4668.9068 5989.0655 160057.4948 4080.9291 4623.942 5363.0923 5363.0923 3949.7397 6439.3206 7925.1677 3747.0706 2748.486 6490.9929 4932.5563 12620.8264 5198.6094 6226.6237 2353.7843 7280.916 2838.3333 7175.717 62149146 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3690.0296 28491.0861 4178.385 367474613 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 43288.7179 9735.1403 14766.1404 19960.7955 24515.9898 7449.553 32556.6577 36477.1808 802501.3252 21830.0278 32286.3753 24376.747 15376.2216 15376.2216 9093.3965 43970.5993 26218.9982 20286.8337 36114.2586 25428.8054 14145.6946 12695.919 27833.5458 24308.479 44673.993 89037.398 65304.4594 11946.8375 16419.5232 23905.0713 35018.978 16002.201 15075129 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 6846.4071 5678.2934 5166.2653 6971.4245 2175.8045 3698.9014 2005.9452 371536.3059 4307.5366 2520.6481 93344.0672 6112.4615 5114.8489 2601.1855 2601.1855 4628.2164 8260.0105 4635.9844 5653.3228 5029.362 7331.3931 2930.1065 3204.5815 6469.7548 2686.4516 9161.708 5487.1789 7546.6655 2665.8663 3937.1789 4544.3557 2742.6005 119774539 cellobiase Carbon Cycling Carbon degradation Cellulose Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 4609.2423 8850.8097 2378.015 93496.3539 4534.8267 2097.9311 2097.9311 3193.2999 3117.8315 6381.8888 2152.1971 5766.848 8008.4461 5630.0965 8749.388 2241.7619 3118.5259 293395526 arsc Metal Homeostasis Arsenic Detoxification Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 903974.1165 2251.1797 2731.2899 2016.7339 4886.3148 4848.7985 54342.2465 4599.5927 4421.8674 2107.7329 2107.7329 2762.8834 8385.8088 6469.6704 4619.1136 6378.5471 16885.964 4472.7896 2819.558 5980.3231 3913.2741 13711.6504 4396.164 7463.5979 2603.8025 6108.0447 4329.2517 2722.9409 7853.5148 299064390 amyA Carbon Cycling Carbon degradation Starch Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 5119.4388 23409.2221 4650.2693 59521.1949 6804.8439 8863.3776 5408.4653 5408.4653 8017.9216 8114.2901 6369.1476 5434.5126 7146.43 1977.2545 3511.3445 311230271 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 17771.608 5094.7291 6084.2577 11572.3804 6809.6535 3872.3634 11308.4759 44491.3156 7172.0534 86958.1519 19994.314 246410.6482 6061.7961 26743.4557 17174.8701 11026.211 11026.211 14897.4274 15583.559 40486.5824 4438.045 36013.2825 4965.763 4628.284 9784.6353 13458.1862 10500.6281 21474.4152 24060.9603 16965.9077 5020.952 16325.8 23991.6306 3765.5437 6921.7829 295978260 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 397732.5139 61077.6482 375815.9761 208711.2252 156068.0614 228641.1985 237828.2084 455703.0059 149686.5319 224771.8858 223748.2392 240592.0173 4294743.6516 192727.1264 278787.8803 474455.4555 318836.0803 318836.0803 110343.8771 322410.1165 129361.0796 162697.3321 184993.3735 180683.6944 118811.6311 120322.9139 148972.0789 111216.1724 485851.0958 164165.8967 287917.6962 148361.6831 136655.0334 141129.2296 166972.2704 226696.4781 89087925 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12168.7684 14721.2011 18906.8238 12598.2375 10733.4777 9590.9283 6868.191 11293.5501 23982.3275 96670.2044 35059.4377 10326.7223 11263.6382 15716.7449 15716.7449 3655.3544 13162.822 8926.92 9100.2061 6253.4101 10945.856 4585.9616 7148.4652 17228.8368 6393.5245 14436.4025 15425.3037 13108.7499 4180.4428 7190.7699 12359.004 3232.9407 4735.9853 315312357 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 17649.1036 651349.5187 196279.5053 10667.5312 23528.9287 3888.3464 6144.8867 10371.3082 7042.93 9774.5353 22862.7569 185690.2293 23994.9684 13817.6528 5736.4385 16283.3963 16283.3963 19644.9777 17631.1462 17537.0438 6549.3219 29309.0428 411679.8697 10286.956 17074.5049 15225.1251 24185.0943 48287.0696 13781.0871 18089.7375 17796.4582 22367.815 13928.0728 6812.5824 13048.1195 83025984 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5123.8109 5191.3275 5372.3878 3091.2165 2283.5485 5376.1236 11337.5254 125347.9969 4015.3247 48710.1945 3560.3142 3560.3142 3056.6414 9267.0359 6992.9826 100956.1825 3377.9441 3707.8413 5616.9779 11905.9317 9406.2448 6050.4088 6940.3879 30001.4749 3942.2557 6105.1156 3349.7619 13186.5225 380732341 chitinase Carbon Cycling Carbon degradation Chitin Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 106663.1892 452406.2846 48404.6632 28063.0261 15325.488 55732.2888 122602.8204 140679.8282 81486.1638 95284.8221 60630.698 1490315.8131 230989.1359 114290.4569 168963.8627 60388.1852 60388.1852 65381.026 148158.4322 60145.3996 359282.5168 296483.6699 171215.2298 54856.7495 69175.7089 80561.1203 144173.3972 153541.8815 105762.1063 171525.9379 48962.6807 89587.4722 74826.3691 91882.8874 289514.5353 83316608 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8224.5307 7086.4704 2030.6406 2411.331 5518.7551 62003573 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19326.8254 12392.9367 20694.1341 21908.9632 25875.4475 12388.5898 15824.5433 13049.8824 8727.3593 22719.3922 22926.4893 14445.4948 321283.0905 26883.224 14942.4464 8634.1967 9508.6228 9508.6228 13762.4745 29859.0803 13860.3782 31094.7032 20763.6936 26748.4533 9299.5359 8951.3901 32018.0291 11071.7414 37188.4532 14727.0868 21418.7073 11530.9248 12682.6636 14498.7843 10679.3209 24031.5787 50542666 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 19427.0957 14823.6967 9537.8047 625143.6349 11103.6307 14370.7333 5473.2362 10343.9955 21949.6503 15400.5979 267713.3778 12606.0628 15262.9827 12953.4681 16389.7009 16389.7009 10574.6686 30411.0823 23993.512 19708.0127 28310.1499 21667.2641 12000.2421 11602.6955 22741.8545 14476.8163 36237.1004 19442.4657 22101.8022 6429.6911 13772.9199 14236.4509 11914.3519 47564.5897 329300494 mer Metal Homeostasis Mercury Detoxification Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 5588.8907 8120.1836 15321.016 2203.3653 6422.8502 6702.6214 4854.6803 15701.3028 8974.7367 95800.2767 9015.4939 12925.9744 9736.1914 9807.4036 9807.4036 3979.5064 12354.5645 4546.4941 7910.2879 8322.7259 10663.7612 3530.2356 9698.0329 9363.861 3582.3919 62400.6567 14464.5337 39552.9555 3285.8333 6566.9278 5830.447 3441.4648 10323.4539 196187326 ppx Phosphorus Polyphosphate degradation NA Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 15004.4139 6088.1081 10642.5356 17347.0648 41121.0162 9608.5618 13077.4087 15795.6934 14756.0822 359405.4707 11055.3354 25796.2001 13925.6183 18486.0573 18486.0573 16342.4176 30815.214 6861.0517 22317.2794 47016.5681 9086.941 15103.9316 19773.3038 9404.3388 21712.7382 58014.8864 19443.6774 13107.5442 9259.8619 23564.2399 19398.6436 24612.1735 8867.1954 156446889 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10656.4572 7610.6075 7721.4465 117961.6553 4775.3984 3445.326 6451.6602 12387.0279 5066.9485 371426.4287 10695.9946 9495.1912 5352.1693 4313.2246 4313.2246 4913.48 13159.263 7875.4507 10362.4775 10978.347 8521.7191 4899.4744 23559.8291 11884.469 8278.8585 11072.1125 4671.3223 13184.5524 3736.9791 7032.9766 7005.0723 4227.7123 10180.3329 209487038 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4274.5805 10198.6774 541389.5979 26757.0637 7277.5036 5287.3815 20384.288 13543.4439 104439.8953 6523.7158 644295.3821 12797.3419 7266.2718 7266.2718 2514.4756 6111.9492 14430.0087 6352.8451 4275.524 2883.9701 8208.7565 32344.5838 26043.3347 7947.5345 206159.7695 7451.0507 22249.8314 20504.1376 224223697 rubisco Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum sp. J10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 37981.5494 10486.1897 6055.8717 45065.6562 4914.8199 18660.5237 11471.8168 4743.5433 23498.1047 13151.246 14673.0656 178455.4023 29339.3607 20116.3206 11139.5481 17757.49 17757.49 8233.6619 65569.7907 11553.575 53791.8166 21928.4075 9470.3074 9968.321 11082.9199 19548.1652 12200.5369 27132.2626 37291.1188 48754.9818 50614.5083 16615.0464 33307.8961 9611.007 9255.8956 395444104 terc Metal Homeostasis Tellurium Detoxification Pseudomonas putida ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7030.5367 8205.556 7256.0941 4491.313 8087.2721 38308.5556 117610.6129 8237.8042 6088.8413 6593.0601 2217.9049 2217.9049 18927.4362 10761.4806 8153.5462 19975.0897 4773.7576 17052.6198 3961.5901 2674.3216 6920.3739 7553.9883 17176.9263 16068.3805 13103.4944 3701.21 5944.9186 4560.9313 7799.9627 7005.5308 95111185 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 20512.1022 4080.2526 14614.7699 2970.7375 3065.3742 21842.5425 4839.4516 5075.1769 17173.6984 6609.6815 5490.126 20345.9295 20345.9295 8229.9119 5701.1301 27173.7154 4752.0152 7858.3034 1958.5609 12850.3873 7333.7116 11371.5107 3910.2202 10347.5541 16687.6202 3524.2041 367040745 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 11595.6927 10386.6786 24421.3859 6823.8706 3615.2278 68712.2249 5644.107 35179.3354 21840.312 10596.8397 294929.8624 20898.899 14384.0583 12206.2656 12251.6326 12251.6326 5919.4235 30953.3024 14366.653 21378.6966 22019.9912 12317.0841 8456.0987 9590.9078 43953.6514 26368.9843 24941.8635 7962.0597 34550.9494 6720.7617 10670.0404 8506.6269 10078.122 9182.6239 222448425 amyA Carbon Cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 37178.7612 4423551.2735 7355.4525 703440.4282 62480.247 85320.5973 35473.2619 51389.7151 5900.1397 7718.4204 32797.8224 12825.9117 411197.9782 13543.207 11429.2034 14237.6217 14310.2562 14310.2562 114560.972 226900.3542 23047.5624 274771.5038 15371.7263 9362.9128 23593.2421 96195.6616 82631.0274 42686.9836 95118.1551 39862.6671 42715.8477 46051.4415 158442.2149 44471.1754 11262.1147 29567.8197 299061689 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 14597.4737 19604.4382 16630.6053 12469.2353 8873.945 10759.1148 4154.5206 9537.4086 20471.6993 12071.1112 229029.7666 13607.1141 11376.4572 6313.1336 9064.0084 9064.0084 7925.4093 22665.9412 10762.6834 16015.742 23077.1273 17099.5538 9936.5488 7503.9104 17564.4378 9318.0049 35797.6594 9937.4003 19380.0037 9204.1306 13147.3603 16198.797 8211.6963 19146.036 13195098 dsrB Sulfur sulfite reduction NA Desulfotomaculum acetoxidans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 5241.4142 36855.072 12210.4002 11886.0032 4193.5389 3784.4611 12102.7845 5349.0787 74774.6745 5771.2855 5134.3919 2117.4165 2117.4165 2932.8741 13498.2748 7299.9214 5191.3343 8281.9823 4002.1005 5998.7382 4445.0008 29848.5956 3533.5216 11163.2691 4357.7926 4137.8889 372046.989 12105.8971 254254989 mer Metal Homeostasis Mercury Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 14341.5794 9632.7956 13025.1379 3426.915 23900.5496 6127.1823 8629.8838 9066.1219 2818.8141 6179.1238 4009.7586 4614.0518 11050.0873 11050.0873 5563.4227 27393.5483 4998.4076 19922.9745 27521.8045 34035.7712 15313.8763 7627.1505 11187.3677 8593.5832 22168.6132 23245.1061 19092.8424 11254.1254 20948.653 11275.7555 8415.8988 325168864 limeh Carbon Cycling Carbon degradation Terpenes Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 3869.5118 4839.5654 4194.2753 5407.9746 3698.8694 4038.1319 126210.7158 3593.2215 2414.3492 2414.3492 3175.2273 5358.2371 5054.7749 2613.6235 6329.3575 2158.6014 10248.8998 5052.02 7745.2888 2993.9909 4730.5845 3505.9671 3138.6513 8609.0277 315498983 RgaE Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 222844.8792 16752.5679 18402.0159 1488534.1365 20246.9711 8157.1285 27637.5627 532459.616 15136.3876 46550.0157 37933.3768 25122.9374 1325409.5207 36949.9866 59727.8175 37475.6859 35759.807 35759.807 16296.4959 37534.7923 30651.299 77569.6345 78980.1984 57233.1122 147870.3919 31024.3334 970111.1249 221446.6285 57769.2021 348810.3898 41704.5588 25284.2517 19555.2307 36621.8019 371078.6042 290235.0803 219544300 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 72185.5287 24475.4093 54636.0794 17279.2893 50836.6325 13432.7947 39175.4122 31890.1861 28363.8711 32772.4733 92164.1281 81063.1528 2008573.308 35349.0183 56013.4982 71642.0578 54202.0545 54202.0545 73447.8163 83435.6577 23724.8716 37990.7644 82152.7419 555064.0081 36155.2567 67824.8604 79103.0207 33882.6368 144900.3194 36834.1968 90692.9409 22238.9545 40478.8072 40048.8857 26212.9298 132161.6699 288942597 PRI Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 43289.16 120594.9197 28465.5236 53764.7462 1966134.4064 1503832.4291 241790.4742 86706.9704 99316.6003 21144.0953 48682.6749 55555.3798 1184306.2962 156086.4135 41753.6387 120934.0124 46263.4011 46263.4011 18724.2465 78780.194 28149.0491 114832.3252 66944.6795 23572.3672 48066.2335 28257.3673 57210.7989 46341.1364 128388.4865 40021.8666 59166.4136 24646.1439 79452.8479 31699.5625 23682.7205 380030.3028 349600055 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii TU-B-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 5172.9762 18552.8966 2281.3126 3924.0422 3766.4881 7213.8624 6733.4799 2694.6128 13120.8838 2171.9122 3914.1465 5301.4335 285310099 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4154.1463 2941.5994 2925.0264 4140.3583 3559.5444 6001.4205 3556.0178 2454.9869 2190.0242 8827.5627 5745.0783 2305.2588 3056.7243 151302186 aps_apra Sulfur adenylylsulfate reductase NA Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 19681.0854 22964.0448 6007.288 11634.5659 3307.5792 7714.3373 2400.5854 6920.1336 17850.1967 15491.7738 90243.3438 8162.6857 7806.0907 6777.367 8898.2934 8898.2934 6432.1677 13726.5369 5997.3728 7469.9752 9474.4009 14894.903 6020.2321 9714.462 11755.8154 10114.832 25725.4121 8728.983 20006.5084 9009.5307 9854.8047 17367.8181 4820.4644 9452.9686 302395417 xylanase Carbon Cycling Carbon degradation Hemicellulose Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 7544.9741 5229.877 7266.8331 3310.7032 6186.2976 4463.9797 2523.9684 2875.7139 10140.6717 5147.7087 3467.7033 255021040 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 30766.3742 250346.1507 8027.0198 114989.8517 29448.3037 167236.8402 3078.0965 4841.214 4144.8167 4476.1366 219321.9887 5056.8213 9688.6093 23462.2154 15062.7424 15062.7424 4238.7291 4719.6692 15307.8423 9859.0725 8274.5818 22989.0101 3568.5098 75715.3997 97170.4103 87059.0385 6820.7213 2870.1684 3704.6414 4834.4401 31665.4203 28736.6372 269305587 amyA Carbon Cycling Carbon degradation Starch Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 40072.657 80488.9099 9015.1914 89189.872 6019.9476 7390.6634 48871.4018 7417.9934 11543.8794 23715.018 29732.233 199662.2335 20833.7828 21334.742 25217.6439 38033.8909 38033.8909 13083.0868 46013.4594 14593.9851 18165.3504 20021.4745 19712.7187 21509.4838 25814.6721 19089.7968 10855.8987 46705.6136 14884.9905 21121.5785 29033.2633 20849.3933 24431.6206 21299.4029 50838.9265 2746667 ppk Phosphorus Polyphosphate synthesis NA Neisseria meningitidis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria; 18977.9665 13985.711 7885.6573 19484.1252 5630.2929 7129.4922 51101.2311 9150.6908 15396.7127 140868.2497 21061.7388 3608881.8707 10091.8536 86513.846 28760.7352 9240.3827 9240.3827 11758.7461 15727.13 14062.6418 14828.0477 15841.894 7902.9013 6737.8802 12313.8324 12506.7679 19341.4112 24046.0614 18062.4995 43912.1505 15087.4588 9579.9069 9536.9496 24288.0611 21845.8695 90197718 terc Metal Homeostasis Tellurium Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 46810.6994 34959.9566 480889.3672 21565.5193 77538.4968 21206.5175 21688.8546 23210.8523 40261.791 67407.0508 39130.2318 32988.6441 1226652.5275 38275.7152 140912.2596 299030.2435 90344.6791 90344.6791 21906.5894 69537.9373 29579.944 63445.273 47442.9872 75667.6558 33250.2654 24185.9478 36855.8685 35835.5278 74754.4581 33573.9094 41500.9252 14842.2713 33046.5307 39925.4179 23983.5399 64317.8992 77460301 atza Organic Remediation Herbicides related compound NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 65716.2793 22223.7542 23188.9793 39090.5939 163326.496 19876.6166 57676.7019 57013.4177 28999.4733 40505.7804 111871.6568 54869.7531 783534.5646 69334.4051 156006.3374 165589.841 55406.2241 55406.2241 33373.8357 76992.6995 54754.5227 80213.0612 103895.1248 64420.0832 38319.0923 50164.5945 92964.931 43400.1321 136451.6215 60941.1847 60170.8876 32302.0847 48038.7559 48964.4082 36961.9125 94942.2875 255104740 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 6138.5109 6675.9922 6658.0292 10475.6748 92981.3752 4215.5035 23792.681 8700.7822 4662.7554 748367.4389 8093.0296 4766.0445 2683.5673 2683.5673 14286.9429 10294.4551 5218.0651 5116.948 11721.8266 3962.8044 5841.2024 12128.4779 19871.0909 12732.5549 10417.7283 27252.501 7319.1294 4592.2379 5952.6658 7266.9513 375140498 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 18220.3366 25792.7358 323047.8147 21518.7292 135983.9764 14151.3787 72002.213 22937.1167 17292.5828 19816.3655 71381.6819 55401.1435 1825876.9972 18598.5351 34740.2348 32046.8447 25803.6478 25803.6478 14112.4637 127185.0823 18809.0931 22353.549 59587.9371 30219.1951 19650.8604 21439.6385 26532.1365 29151.3107 40874.0469 39343.1876 23942.4108 12128.3539 25156.9657 41864.1161 31967.548 28701.8088 241871125 terc Metal Homeostasis Tellurium Detoxification Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 8877.1243 7315.5917 9171.4754 10186.5026 83536.8761 5258.9919 9560.55 6572.8285 5345.5587 177381.4248 9049.2798 9358.6611 8241.3516 3556.8011 3556.8011 5956.1927 13332.4467 10685.8989 10564.0549 10042.0384 61263.888 4200.5408 19082.0296 13011.3954 67262.6796 16668.7335 9175.0062 12339.2867 5068.1953 5240.7471 6210.7543 24174.2792 14928.2256 118027744 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 8933.7589 8728.0125 16449.4344 24917.7954 85046.774 145111.9872 9156.7393 8158.5682 4348.8582 117592.4853 9136.3691 5216.3835 4741.4408 5671.9028 5671.9028 5663.6416 15569.0352 10372.0745 8153.3485 12063.1686 12204.9078 4004.7626 7384.9173 13620.2977 9822.8287 18749.1486 9835.3279 16440.7643 4746.1613 9604.7641 6828.6921 8092.8675 41821.3668 319948508 amyA Carbon Cycling Carbon degradation Starch Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 20061.6537 10439.0332 12586.7451 32983.5321 12972.2499 12804.2874 12697.3542 81242.4414 14348.2631 15346.436 19292.2304 11046.6079 389181.0179 24730.6147 21725.7693 15093.9105 13539.4231 13539.4231 12006.1876 22734.99 16210.0342 17609.1492 24858.1353 64961.7675 17279.8817 16794.4588 25076.999 21675.3004 46378.8698 19870.5053 27279.9601 14006.7596 18870.7111 31350.5449 12836.8998 26030.8138 76578825 cysI Sulfur Other NA Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 10943.988 11501.4726 62759.2052 27181.1142 32115.0753 2550.5011 63230.3752 9644.0159 11657.3385 16326.324 18751.3478 193405.9764 59612.881 4824.0566 11872.0913 5418.0424 5418.0424 8319.8941 14544.7366 7393.9265 44119.2087 10242.4007 13256.8027 10318.7173 8588.1874 36916.2447 55009.1411 7649.3876 16424.648 4436.6307 13165.6472 13480.7065 49151.252 11961.2472 164508660 nosz Nitrogen Denitrification NA uncultured organism 8665.4886 4217.2698 12952.6603 6007.1421 3799.1969 9201.6569 9855.2252 91081.6166 5702.027 144837.5499 5866.2358 3068.2537 3068.2537 2673.6499 13229.969 3720.8905 122027.1926 9401.267 3146.0247 7486.1924 6306.8714 3114.3091 35434.9128 5529.2381 9128.2206 7473.9696 10636.0438 2397.1743 363423130 amyA Carbon Cycling Carbon degradation Starch Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 15267.4273 12681.3961 17187.1499 23826.6425 6676.2917 4416.4446 15076.6449 123021.6108 6844.765 11123.2386 4872.4395 4872.4395 3746.6263 8109.5048 5030.8523 7422.8461 22389.9376 9166.3935 3235.7495 4010.5639 13521.2341 4458.9057 6197.0961 10889.4454 2627.0197 4382.8358 7001.1052 29519.5575 374413696 dsra Sulfur sulfite reduction NA uncultured prokaryote 5240.1561 1890.7765 15149.725 4121.7343 6184.9353 7407.9085 7407.9085 3878.9502 13232.3682 2350.7337 3059.5436 2652.6939 6570.1859 5367.4998 6768.3314 5293.0661 341926033 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 16952.0113 52025.7705 11602.6984 13786.1985 32428.1207 7849.4613 13593.4379 10960.4962 12959.3055 25427.3186 27183.4795 402718.5873 18254.9517 25201.1541 22215.2024 15038.94 15038.94 10898.0154 23012.0319 17597.0629 26756.9454 19617.0535 16039.7247 9136.0951 11586.6983 23355.5944 19440.1754 40053.166 8252.6272 18205.9545 8584.7154 12541.717 15858.9889 15348.138 20150.9686 119376802 cmci Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 113653.8951 14899.2335 49071.4114 37497.6122 36462.5606 119124.1012 156965.7984 50542.0844 27244.8126 34908.8757 32749.4753 23186.9077 1144941.6087 43058.9739 40061.2441 59925.8647 26474.6911 26474.6911 21408.9678 69077.9564 40886.9725 50069.7956 50588.5162 42927.7867 20433.9456 12368.8181 118977.2408 19899.5558 57246.7229 38074.9045 52430.5696 24255.2305 28054.5651 30566.5543 16990.9456 58520.3961 386353364 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 14436.2525 10608.8024 2480.7952 2480.7952 2268.4772 229828712 pula Carbon Cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 9825.7687 11634.6226 12346.4974 7216.4267 5728.1606 6686.1692 4605.8209 5863.0948 14348.5906 7358.0073 113061.0352 11280.1931 10848.8528 5919.9542 7549.1346 7549.1346 19532.2257 18642.0027 9195.7017 11011.7973 21653.7082 87943.2448 5907.2325 5386.5156 9282.4335 6090.2882 20491.0948 7329.8449 10954.9766 9839.4404 7348.0965 8285.9756 5076.9083 10250.51 86169120 urec Nitrogen Ammonification NA Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10343.8553 8354.4851 7675.8785 13354.4772 12403.0742 6187.1903 78750.2206 7498.2579 7940.2404 14290.2114 34729.499 355696.2874 8735.1569 12737.7538 19432.084 13856.1418 13856.1418 14288.1619 23481.5832 12128.3985 49003.7323 34877.6046 9087.1143 7139.7263 8490.0064 15230.3445 6752.8412 27074.7903 15848.1714 14840.1994 12158.3376 14301.8832 19082.9832 6000.5316 13397.5842 221722353 amyA Carbon Cycling Carbon degradation Starch Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 11361.0655 19610.4557 77602.6967 51744.5081 4171.009 13962.2987 7441.0662 4801.3163 2496.3012 4204.1918 3146.5999 9982.5101 4015.6219 290467859 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 7718.4349 7230.381 7404.2873 13769.5917 7537.5803 7796.6254 5161.7121 4604.9313 9312.729 7832.269 5268.1963 257883.6737 7992.2328 10258.4676 25212.6287 6741.1162 6741.1162 6822.6352 15577.2667 10425.3176 13875.8577 11762.3389 9977.6619 4106.8409 19506.1205 13195.8846 6177.1845 14682.0115 9377.6535 17366.5301 3912.0606 6721.4991 6740.8557 5087.2261 14667.2909 357589205 ppx Phosphorus Polyphosphate degradation NA Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 31660.974 14039.1809 18498.5486 10506.4839 6062.633 19120.435 32938.3221 18102.9144 11815.3115 11202.112 147945.6465 17440.8631 13807.394 9361.5754 27222.0037 27222.0037 8202.8825 24100.6487 10044.0928 14345.7155 70800.6751 9874.8204 10147.1548 10438.6208 18281.614 14292.0734 37097.8041 15129.2428 40650.6434 13168.4568 19576.9903 37438.5153 7053.4793 7495.7995 359248892 mer Metal Homeostasis Mercury Detoxification Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 8974.639 6436.7491 12633.1927 6347.0706 6670.0827 6440.3866 5810.3518 5398.0732 8186.1737 3358.6534 123000.2689 9448.7027 8595.0618 4867.8204 5052.5278 5052.5278 5960.0325 12123.3275 8858.6719 5130.0219 8365.4124 12334.671 4530.2713 4210.6908 12063.1343 4493.474 16936.0945 7150.6424 11409.3507 5463.277 5788.1169 7290.1824 4091.6273 9068.5891 339323809 tfdb Organic Remediation Aromatics Chlorinated aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 18863.6233 20155.1144 19122.8072 5123.5407 16874.5936 100157.1814 6704.2684 24603.0597 30315.1361 136300.062 5660.1703 11300.0306 12658.1268 11640.5879 11640.5879 3843.6223 19486.6631 25101.3057 48421.0293 22274.3138 47539.7839 6782.807 8805.4295 21639.5675 13438.0094 30226.3493 16226.3392 13158.1409 5791.3949 11003.5609 22539.433 16614.1243 19954.0865 313155170 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 57344.2743 19075.4745 10866.8737 2416.1449 8749.3889 8800.1043 2650.5947 2650.5947 6727.4801 4352.4427 4510.6942 5555.7496 4504.2512 16330.8566 7160.5433 5666.1194 160362383 vana Carbon Cycling Carbon degradation Vanillin/Lignin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 7399.8086 10255.4157 24999.0275 7796.8376 5406.2996 106354.4351 6120.9722 4594.0101 6697.8876 6697.8876 3130.6392 9954.0572 8872.7441 5619.4186 15633.2064 7451.3927 2629.4938 10046.279 10234.693 3664.7921 17666.4714 8728.6502 9750.6746 2833.6716 7826.803 7084.3422 4859.901 9934.1292 374329806 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 5038.1597 2995.3935 5200.0648 7012.9455 2720.0316 112030.0999 11156.9368 10597.2431 7728.9477 7728.9477 2555.8812 10642.2295 7472.6793 5830.9096 5042.7466 2672.6491 4555.7475 4287.9915 3963.4333 2099.6143 111026488 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 90998.0921 113198.5721 89780.978 153508.2993 28023.3954 38147.7694 29837.5232 34219.6137 37628.7147 83303.7914 55907.9107 3360018.5786 58620.0314 115161.5404 82806.9892 57933.3633 57933.3633 25447.5528 88097.7641 49433.7093 41937.6955 92526.8617 185008.0949 44574.7424 43156.7192 56950.0099 35287.8785 176055.1602 71304.0179 58603.8842 18151.1168 62132.2586 52869.0751 31809.0493 48889.0233 307594619 dehh109 Organic Remediation Chlorinated solvents NA Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 7174.3212 4777.8605 2618.2667 5591.1236 6217.3182 2528.1675 4526.2517 15887.0161 15887.0161 3266.7952 9243.4535 7829.4564 4195.7864 19393.6895 13232.1979 7587.6132 2737.5314 8005.0119 4780.6534 11618.4114 7403.7335 4777.5616 5805.3543 7399.0368 4051.8295 8879.849 86558241 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 27220.8429 15749.3615 15002.5926 6571.8065 23702.4316 9539.2299 21886.7879 11564.773 50392.1903 18625.1238 15883.7694 15939.4813 310983.3389 20834.0828 19058.9216 27982.3878 11373.492 11373.492 17568.1572 42853.1131 20937.4878 18536.584 24304.6385 27828.0234 10893.5927 70740.2425 27776.7854 11533.4485 42344.714 104084.7797 26231.4979 10377.3454 14107.8132 17984.6529 11017.3486 28993.9321 293631898 nbza Organic Remediation Aromatics Nitoaromatics Pandoraea sp. BD-33 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 7678.945 20112.8794 30479.6179 13828.0583 5545.3733 4496.8983 8133.2755 7018.4381 178310.5872 4271.5578 10950.9467 12452.7172 12452.7172 3628.817 11905.6274 6808.2621 8572.0819 51776.2222 26164.2908 2430.7632 18315.5894 10029.2749 10001.6648 17696.6911 8294.5726 11223.0803 3252.8595 6340.9428 19427.4698 20809.4701 5491.6547 302448422 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 54683.5624 502694.1147 26984.7151 68754.6377 11180.8764 15672.4145 14249.6091 28109.1496 24543.6579 41874.8496 22515.4346 673315.8918 47347.2689 29301.7199 136245.1767 27317.0878 27317.0878 20320.5207 37922.6307 35385.7353 58441.9339 60945.4612 27538.5998 24956.4693 27480.7281 105079.8466 34511.7416 70467.61 41574.2863 42620.8417 14209.9063 39422.9392 35604.5135 12535.3243 40034.6382 374991446 limeh Carbon Cycling Carbon degradation Terpenes Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 12020.263 16142.4377 15144.8742 33169.7869 4864.6689 14557.774 19745.3364 6356.4804 16922.8831 20472.2386 10326.504 373798.1509 18793.9133 25173.7814 12860.3614 12412.2663 12412.2663 17064.38 46708.1501 17412.6899 14327.5086 19529.6916 27434.9313 23043.1006 11632.906 24275.3548 55809.8097 46347.2862 20384.8267 22061.5343 13905.1739 11690.9954 11050.6814 22761.0084 36254.3659 381191213 fccab Sulfur Sulfide Oxidation NA Thermus sp. RL superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 6864.7892 5927.6587 12744.3699 4757.2418 9311.7353 4045.1309 14851.51 5323.3389 4549.1198 3379.0968 31754.2032 5223.4923 77205.9713 8119.7224 7426.8526 7290.656 1716.3179 4389.5933 6196.1351 2787.0973 120406746 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5205.8271 16518.8559 15314.0539 4050.7612 9392.8624 4767.0171 13576.6348 3651.6969 85225.2753 15390.6614 4680.2463 2444.2507 2444.2507 4738.4378 10108.3337 9864.5934 4468.0157 6381.6484 4966.7616 3781.3186 11720.6391 6251.4821 13779.0413 12761.546 11522.4273 4374.5367 7258.8548 4360.775 3717.5371 8779.5096 379708641 arsc Metal Homeostasis Arsenic Detoxification Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 115601.7657 23879.7694 7403.1649 12535.4394 12815.1035 21001.7773 101214.7974 18777.2933 24284.6457 20194.7243 70552.8203 628579.7932 24297.0515 35841.1552 89987.8734 31426.5691 31426.5691 25660.4448 58413.1842 28184.8095 38029.9401 70822.1833 21062.3376 20145.4151 83993.2755 31976.287 20893.673 85509.229 20053.9372 103084.9889 12027.0459 117601.3752 83705.4192 37572.523 116378.4555 254281991 ppk Phosphorus Polyphosphate synthesis NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8043.4038 12860.0898 14765.8582 112860.2709 15419.0824 5293.8302 16112.281 3626.382 22582.7523 16809.1469 12586.0333 388742.0464 70847.2569 24755.0363 54587.2568 24662.6212 24662.6212 11670.5623 30485.23 24236.4218 6980.8488 5723.1967 51724.7485 5406.3725 15018.3117 320337.5715 13396.5696 51396.198 37879.0406 43423.2155 18987.4585 29343.8226 13998.2665 4831.485 11620.8222 78102057 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25489.3098 10940.8365 12746.0271 14246.9995 7751.1468 12017.3547 12862.4143 8089.0204 16725.5614 20293.6092 11882.4274 4195785.0881 23364.4988 22465.7689 16057.9398 36706.3715 36706.3715 13949.5539 37462.2952 18088.2495 15808.675 27577.5424 15921.1228 139418.934 33801.1495 23011.8601 41606.2488 57703.6868 37192.3694 43492.1999 15545.203 27270.1514 29268.4972 12808.5788 93364.2573 346644299 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4196.7713 2082094.1884 5391.6668 4533.5461 6620.9887 10290.6533 9336.9968 5447.6811 3532.5924 3532.5924 2916.8115 6931.9419 8966.2947 9023.618 6206.3825 5179.1424 14792.6905 6110.0745 2519.6921 3023.4382 6828.52 12915.8063 358382817 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 9412.8651 75682.1577 9598.6458 16227.6556 15712.6791 28370.611 6149.9708 19367.8323 2680.5853 11379.919 8439.3674 6985.4815 102317.8447 7973.4466 10918.2042 11913.9891 5983.574 5983.574 6125.3107 14017.7248 10426.2748 9493.8361 8352.1452 24461.5419 4169.2858 17068.0641 21426.5435 9872.1435 22988.7597 12992.3024 13519.5229 5386.0777 11051.1 8688.9198 13194.9795 10742.7067 170101420 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 5014.0531 8469.2675 4063.5452 3188.878 3288.1183 6047.4632 2479.6425 164951.861 4995.2177 5840.984 6740.8093 6691.6122 4898.6738 7546.4594 5828.758 3287.5869 2454.2849 6379.5056 3689.5135 8946.5035 6868.6576 3675.7743 3875.4516 4045.8975 3563.5912 111068244 rgl Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 8339.7946 8387.4575 4910.2102 4748.8574 3004.4094 4177.5642 4195.007 8648.8319 121803.407 6153.4629 4034.0926 4280.3891 3775.5725 3775.5725 3629.1915 8930.385 4043.5675 5505.5601 7668.9741 7079.4847 2308.5352 4581.0439 7203.719 3624.7874 7682.0151 4153.7701 8327.4195 3077.2219 4958.5897 5268.5598 3100.7604 5527.2747 391419266 arsc Metal Homeostasis Arsenic Detoxification Streptococcus canis FSL Z3-227 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 5716.1439 10797.6821 11092.9112 5604.3151 14404.7056 4055.0423 7919.5954 25594.511 12764.3898 184625.2273 13342.5466 12721.7433 12793.2551 3837.2623 3837.2623 3523.1352 13278.4919 10333.1307 5705.5562 9300.1041 9842.3027 4210.8149 4041.4646 18901.9991 3186.0329 16661.2757 6115.589 10373.3629 6196.8447 7403.3383 6978.7162 4003.2568 9429.3078 152026694 nosz Nitrogen Denitrification NA Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 4377.6274 5897.969 26723.9083 10475.13 3984.5455 19558.0908 3585.6722 88322.3207 6834.2967 4610.9543 6607.7096 11984.9951 11984.9951 3297.7102 12456.8833 5854.2825 2434.3021 10639.1866 6688.6134 10567.5317 7867.3647 8506.6954 5602.2464 3721.1357 2356.0975 6681581 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 89353.5605 12203.4312 4188.1861 13716.2483 3291.7012 126409.6735 2965.3355 5491.8773 76893.6196 4821.4588 6574.801 5719.3807 3740.8122 3740.8122 9794.6735 7550.1924 5207.463 13125.7083 4005.5278 10026.4443 10567.644 19352.5062 3618.7297 16807.7274 3298.0424 30269579 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 93066.5427 72546.3443 21085.6913 48049.1216 17281.6544 6650.4421 46692.556 23844.3668 32583.7283 34233.5683 40606.8148 55679.7006 792630.8834 80046.3105 33624.913 32343.0587 37221.5043 37221.5043 23922.7483 41495.2816 32343.2163 30891.5361 39672.4296 72491.8695 18179.4492 23022.9187 31484.0611 18551.3491 64720.0304 22284.8209 46104.917 17526.2919 22146.885 22499.3803 14950.2049 62221.1129 60476328 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3968.6312 138828.6471 5185.8687 3029.988 5528.9959 2094.4885 5639.0445 6328.9035 5842.5468 64735.2862 4388.4278 4595.3496 7593.6265 58767.1176 58767.1176 4864.682 34195.4174 8336.99 11748.7461 10659.5502 2953.6319 11042.0159 14635.6564 20023.3749 13063.0334 10968.3611 15674.2782 4918.6823 6280.9538 4664.781 7629.9682 15748.7954 311218364 nhh Organic Remediation Aromatics Nitoaromatics Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 16368.3952 10719.2809 14008.7532 10390.5601 8357.1066 7775.9707 4222.5262 4681.0834 21482.6834 12250.1318 175304.4077 12382.6188 7368.9767 12151.3138 11374.876 11374.876 4432.5089 12340.2803 48018.6781 8780.9565 16372.9186 13227.5532 4515.5906 9561.739 19729.6595 9699.9784 21702.6972 9739.2675 31190.8444 9112.7993 7364.2239 27477.1734 8719.0058 7529.0877 359423194 badh Organic Remediation Aromatics Other aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 6268.6677 6776.4827 16585.7112 3442.0843 3808.4825 796039.7574 19509.9072 16646.1506 16646.1506 3080.2625 6197.399 4232.4086 5027.2091 7851.7423 6764.3557 4866.7354 6076.8225 2435.0594 17786.9654 5348.0018 126668643 urec Nitrogen Ammonification NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4712.2212 2696.0056 27945.6531 4785.2113 104624.8796 4161.211 2272.6733 2272.6733 64138.288 6577.5702 12920.5733 8892.8182 2913.0367 10890.3777 8382.0568 3564.5256 18826.5018 111073793 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 30864.6183 12940.4939 28292.8046 24443.9174 170124.0517 14303.1953 7932.7843 16994.295 21337.4405 32785.5617 291144.756 22150.9328 18010.3724 28338.1994 12917.8285 12917.8285 11445.173 21972.9431 19509.9779 24970.0711 47125.0428 25643.3774 12222.644 8460.0591 20477.9122 11831.1813 39741.6094 20085.2906 23577.1337 11674.0555 11655.5463 12079.7992 11533.1076 26500.5415 83949933 arsc Metal Homeostasis Arsenic Detoxification Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 20706.6901 8205.3913 5394.0768 4013.4262 2383.2048 4145.8704 2707.1878 4147.4982 14127.6935 6872.9863 6872.9863 7378.6568 4568.9613 4810.891 2905.6335 2725.2178 9790.4219 4618.4896 9283.6251 6141.1162 3967.1679 8479.828 4591.9941 94471337 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9304.4392 14459.5213 4366.6272 11811.0978 4558.1161 2360.4784 11569.0419 11801.1793 6344.829 12810.1966 18520.817 112874.4082 8471.8309 26237.6448 16414.7933 29913.3661 29913.3661 8938.8347 26416.301 8022.7967 5996.1641 16709.8697 8102.0657 21013.4931 16170.2491 15169.6102 15057.556 32682.0077 21819.4667 29747.5491 8498.1076 11020.8536 24378.7677 21237.577 88898.0732 116750059 ben_bcla virulence NA NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7619.4247 6222.0741 8441.9936 8059.4945 9086.5399 11903.1778 3804.0578 7081.3974 13198.8724 19205.0659 941822.0042 12309.9464 8999.5208 5837.7094 9458.6096 9458.6096 5211.9055 10061.2012 7939.936 8781.3119 13354.6119 15068.9786 20831.0649 4685.9002 14770.4399 12246.3972 20621.287 9401.5224 12218.6931 6440.9133 16008.2103 9879.4197 7909.1179 11124.3449 317404894 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Achromobacter xylosoxidans C54 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 13167.2988 8468.6666 24539.8684 8667.6004 18088.547 12588.2165 14363.7841 10562.0034 11670.6695 7987.7544 328753.5623 22304.3757 12290.0843 28691.5893 6028.3198 6028.3198 14116.2568 42323.0585 13786.4584 16864.0836 34180.8692 16983.1063 9509.2525 10987.631 19504.3907 9248.7896 30935.5062 13050.763 39707.2894 11951.6657 17889.6249 13554.8063 11957.5008 27300.7691 383837983 oxdb Organic Remediation Aromatics Nitoaromatics Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 18208.1405 6406.6418 9651.4683 6751.1269 7533.7673 3073.4222 6710.8986 6601.6276 8376.995 324341.8776 5669.4321 19004.985 10690.7741 12532.8281 12532.8281 4420.2752 52914.0992 4658.0638 235728.1042 4978.1699 4140.6274 5700.6665 12632.4527 8880.2212 10583.0375 26631.2513 23957.0194 21014.6696 14962.9743 19136.354 22209.5357 8844.5346 5630.8084 297539826 terc Metal Homeostasis Tellurium Detoxification Methylotenera versatilis 301 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera versatilis; 7844.1396 4943.2778 4634.2096 3353.9921 4054.2204 14068.9324 3059.4883 58457.704 6684.6475 16054.8153 76464.6657 4179.906 4179.906 3430.5657 11045.9305 3989.1001 92220.6073 4541.3294 4122.9561 2294.4547 2686.7647 11095.0539 4383.899 7985.9963 3256.2785 3428.5216 6880.9737 271962485 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 19360.5125 4773.9393 2114.2828 8172.1164 2109.3683 10896.6332 11045.4409 8568.0546 213243.5045 47349.7615 17656.477 278501.005 11945.3637 11945.3637 3562.3975 20523.5058 5631.2622 16869.6953 8060.4614 21511.8251 43927.5109 39332.554 38154.2487 6878.0487 32634.7045 11744.8838 24904.7072 3753.4906 28986.1432 12907.4652 12075.5789 5076.5706 357211689 xylj Organic Remediation Aromatics BTEX and related aromatics Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 5160.9347 5372.3957 13764.027 5257.207 4660.4687 3392.981 4669.5132 2266.7183 2266.7183 3474.5037 8199.8758 3557.9535 2451.268 8478.3379 8481.4398 4918.4092 5068.5419 2619.1729 2842.1151 4677.9179 2303.6002 223017319 urec Nitrogen Ammonification NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 5360.4361 361937.9825 120380.8096 5665.3016 6060.6777 2322.9081 4835.349 12413.1822 19375.3857 305067.982 10232.2599 5611.8282 24648.0682 3814.131 3814.131 3001.1977 16237.6286 8454.8507 17895.9881 4709.7641 2837.4193 4147.4585 10205.7715 4114.7044 47817.8469 7978.139 9489.8067 4507.3616 4852.1551 6045.8302 4310.4263 7623.6508 29293360 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4376.8829 5245.7772 3139.6578 3084.3382 2720.8983 3894.8827 5568.861 3922.053 22134.7712 2939.6079 2939.6079 3585.4483 8422.2377 5798.5206 5942.7899 2080.3573 2865.0553 2846.909 7937.384 3748.7871 3522.0298 4100.0618 4550.9422 2709.3867 46104760 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 4063.4343 97850.4582 3669.202 4030.6847 4030.6847 4300.4489 3314.349 2935.3931 4886.4001 21646802 dsrB Sulfur sulfite reduction NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 32150.8418 57223.8522 48771.7438 6086.3748 8718.5924 7513.8475 13686.4825 123693.2118 6990.15 28932.904 39979.5166 30975.8109 458537.3207 9447.6547 28897.1005 75298.6443 44018.0026 44018.0026 17784.0331 40054.2556 15097.6591 30976.752 25916.2721 28085.3784 25671.8659 79220.9357 24598.4641 32207.9512 51865.9065 24589.5648 34782.0282 40266.7121 31019.392 33480.3227 127485.6102 42945.3201 237785218 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 54514.5058 69308.131 21650.5305 12795.2271 17619.1696 69728.8599 48662.4644 16808.9087 24966.8104 51064.0012 357318.6266 34972.394 53696.7118 83202.1034 62245.8843 62245.8843 24543.8174 43522.0675 32672.3054 36041.7982 115354.6493 29888.8199 46510.6845 31128.2231 34584.4553 67167.4565 71482.7356 79443.9374 48588.1031 31655.375 43483.901 29461.4258 34371.6066 41573.4151 379065405 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 4774.802 3375.3313 2430.4647 28912.1648 4842.3905 16560.8764 104054.7052 7027.785 7272.8425 3274.475 7346.1958 5495.8955 4180.9074 7692.7993 2496.7813 4053.5009 7470.2971 3308.6685 3327.2367 5216.2965 2494.543 11901.114 55791896 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4389.9037 6168.8872 3599.2229 2387.7715 5895.8952 4674.6598 51117.8702 4367.4408 1965.266 1965.266 3525.6222 12307.3307 4369.8223 3436.6604 3839.583 4327.0776 2741.0571 3300.1318 4927.1196 3172.7719 9714.5044 5706.8697 1969.4253 2778.8603 3165.4865 1907.6952 4744.5777 306487927 nirs Nitrogen Denitrification NA uncultured organism 7346.9474 118059.6099 12419.2675 4579.7448 2978.7135 88750.7973 10174.4223 3147.8998 3147.8998 3479.2292 3267.8469 4193.5079 3704.6181 8075.3651 2765.0748 6772.0421 4019.2297 5149.7143 3053.8461 4180.4702 2171.1448 5768.5814 338810437 atza Organic Remediation Herbicides related compound NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 79948.2398 38926.9149 17275.1759 15694.7303 15793.4564 4020.2063 7666.4848 22519.6574 12601.4413 140435.537 10175.1597 16225.3236 29366.3888 12522.3638 12522.3638 34084.3828 31053.8067 10267.396 35861.5468 304058.6897 7152.1879 13480.4931 12117.648 13277.6092 6713.3789 16955.2674 21558.2924 10798.4616 6521.6891 5405.2851 10365.1831 6498.5789 10276.2193 381372402 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 12625.0234 53247.6006 18384.2984 20693.4324 5822.2025 105840.4381 12940.9755 10117.0614 10797.3931 14886.9448 8975.3494 223295.2674 37749.7776 34338.7257 7422.7339 15749.9648 15749.9648 10937.4796 27357.1922 11433.3725 21297.2616 17729.137 18006.1508 16639.5076 12089.8097 24990.4961 14911.499 37833.5108 23820.4152 28115.4202 22881.7315 11789.0901 33504.4888 30352.8718 13024.76 53854603 dsra Sulfur sulfite reduction NA Desulfovibrio aerotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 14952.6992 18047.8008 48427.5666 7787.4331 8016.7818 6366.4351 4874.8821 118312.498 11405.5315 2113.3191 140262.5566 9333.0965 6386.6729 5995.9544 5995.9544 6481.076 29033.3762 20286.9988 29245.2183 13288.6761 5330.5099 5838.3988 12303.0562 14237.6217 29842.1351 29707.5465 18164.7047 18485.0745 5599.4845 41131.7565 26083.8537 5578.0914 18159.201 312961482 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 11911.6708 8200.4457 264321.6484 9946.9595 4837.6617 4765.729 8634.8613 4729.5657 14244.9005 12633.4119 7391.676 237685.1074 16022.1183 13236.0604 5078.5241 4458.7813 4458.7813 6116.9096 14306.9467 9666.8419 8819.8131 13107.4551 13532.1193 21359.787 5905.555 12872.1616 7446.1785 22631.0644 5664.4134 10802.7645 25142.4277 6251.9912 11473.5897 4184.5121 16418.5245 118472931 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9761.653 7261.8832 4216.3353 10304.7 58834.6478 17029.0524 8857.5838 86447.7662 15217.6446 144430.3261 13889.6552 9868.6929 16049.726 10925.9842 10925.9842 6875.3904 35182.8768 16678.8403 9993.6916 21217.3233 7838.1254 11913.4717 11432.0067 13813.7834 11055.617 44754.8663 12675.4371 23381.9826 10197.3144 10154.5574 35111.0686 9543.4057 9706.2721 134102743 glucoamylase Carbon Cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8887.006 4718.5765 5982.0371 6127.3421 9941.9172 14235.5781 5592.0992 7033.5962 4266.1932 93086.2201 6370.7135 6079.3584 2876.5825 2876.5825 5927.5705 31186.649 5408.5525 5479.606 8645.0618 10824.165 3344.715 3383.7254 10115.4344 3377.956 16618.8106 5264.3329 8584.8203 4882.2569 6383.6825 5594.4133 6211.3858 12647.1962 308434779 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 65048.1906 54957.5322 108210.9898 20175.8258 9739.5608 95601.4094 79055.1145 98767.8943 23534.2463 176935.0625 51100.8656 842174.0314 135741.8578 153295.0971 512037.8337 40664.0853 40664.0853 53513.2789 78326.3884 23058.5743 84972.9538 486945.1304 31268.575 32050.6224 46523.6459 68378.5571 129638.6291 376922.4886 89239.9879 119569.879 51975.3353 77984.0801 71530.118 34530.8146 46254.3351 71849040 bphF1 Organic Remediation Aromatics Polycyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 16895.2301 9837.2446 39117.8771 9693.4077 169808.5228 72029.5086 103203.0097 12606.2175 9499.3963 19982.1214 21731.407 240408.9062 20952.7125 28210.3531 12139.9312 12966.559 12966.559 8278.3674 36349.5407 35039.9064 25324.6058 48845.9583 58075.4304 22977.8201 10424.2754 44808.7984 60498.5469 30340.3617 66191.1677 182331.204 10724.2635 12456.1655 21048.1341 20892.0203 17986.426 304322313 glucoamylase Carbon Cycling Carbon degradation Starch Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 21107.0977 29245.0414 115262.329 139118.0788 32245.096 55874.4032 64674.6532 45765.1914 38841.2269 46098.1359 3179618.5412 76287.8967 32368.5465 54908.7668 42087.2691 42087.2691 9920.9796 84830.1717 27340.3142 55677.0609 31195.5228 24981.9236 18235.129 34442.6752 142595.7704 26799.3292 72415.685 132556.8094 56950.5209 17012.0846 61014.4299 30152.5642 11821.8844 24544.0243 374656415 catb Organic Remediation Aromatics BTEX and related aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 10391.1026 7107.5491 5343.2316 15557.048 85953.7841 2516.1616 6498.1115 11615.3989 7017.0028 142337.5529 11690.9556 12609.2657 6600.1976 8834.1047 8834.1047 5691.1128 13231.7833 15771.4345 9458.4132 10803.0338 13886.9361 4652.6942 3876.279 10141.8691 5985.9969 25102.2483 7392.2379 18983.4409 6021.6952 12127.191 9731.2086 6763.4468 12533.1499 338171855 ophc Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 85576.7147 122736.2936 33667.3277 161099.9062 24233.6665 401043.6926 60089.2201 51084.8973 65838.232 44976.2913 60474.3645 655614.7969 35132.5599 48458.1684 78982.4664 73000.8618 73000.8618 28837.2772 78359.3736 39614.7617 74646.4204 58041.9498 62717.1275 45833.3164 33018.3283 49661.5702 91105.4766 125196.4567 63312.0565 99861.8369 41625.4236 36623.8263 56141.1504 19396.3123 62310.9235 221635503 alkk Organic Remediation Others NA Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 6108.9887 54805.2532 7515.5106 4524.7676 9090.4103 71183.0839 3562.9416 4736.0905 2664.7355 2664.7355 3626.2602 5766.4439 5304.1563 2815.2837 10503.1314 6640.8162 4340.7676 296444631 nifh Nitrogen Nitrogen fixation NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 6118.6567 7170.9567 6561.8562 8986.1479 3059.5137 3059.5137 3806.5519 7873.9668 14496.4206 4641.0258 5247.0487 4324.542 9814.9452 5501.3679 4273.2087 4862.8686 2495.2424 291536252 xylanase Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 21016.9259 10580.049 14429.4845 56902.2853 26437.2252 9142.1221 24840.6065 17902.7274 20128.4631 16389.383 24902.2062 12827.0795 380360.8274 19763.5183 17403.6701 18050.5558 11756.3641 11756.3641 30171.7061 23676.0414 20308.603 27074.0944 33649.0602 32092.7542 14715.7834 20471.3167 28056.8568 24240.8593 41973.7047 13002.0993 39131.9304 14337.1178 17616.3992 29236.7601 16028.8584 63088.4979 319755744 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 72492.9791 182906.57 244259.3278 40846.0177 88728.8265 238266.5052 80826.1901 56595.3934 137292.8264 76583.3762 181945.992 96337.5153 1876039.3112 142851.8593 113627.8154 76750.1001 127481.0345 127481.0345 52840.5207 185537.4622 75294.0062 248286.1342 96288.2427 90546.9141 60922.9194 87758.8439 58321.0534 55908.9604 140095.4182 58842.292 98888.8243 38913.2454 82596.3586 102479.932 72343.395 61407.3332 29828693 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 5473.7796 4484.12 2737.1554 4894.5323 4003.8066 5103.5614 4876.7086 131127.7002 6721.9933 8239.9526 15635.5063 9161.3448 9161.3448 6562.7846 11691.7585 3377.0906 3328.9118 5307.7783 2524.4795 3600.0005 14062.8366 7955.2568 9854.1939 3486.1016 5473.3349 4492.0391 3164.7549 8260.92 241366431 phn Organic Remediation Herbicides related compound NA Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 17034.4151 7598.6222 10298.7301 16405.3156 7057.892 10270.1977 9842.2624 6793.0183 15244.3239 23112.3245 8449.1636 370440.1803 16423.7185 20981.9566 26078.3786 9624.2387 9624.2387 15832.4903 22838.7035 14200.7017 16280.0606 11293.5912 20508.2888 8591.7535 8464.2343 15878.7423 7450.7728 21421.7678 5780.6823 16422.6097 8517.4184 9774.2478 11999.8738 9268.1578 14636.4561 330831676 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 217241.5623 7608.6915 12902.0346 41151.4486 6357.3039 163363.9845 54300.549 15885.862 87049.6061 34487.9587 31053.4254 449324.2994 307101.7421 25161.8198 12994.178 29831.4607 29831.4607 18996.815 63162.3976 15612.0625 52473.2804 24161.6472 74285.0461 18282.2864 17926.09 54753.7733 26510.564 39274.5856 30699.2669 28570.8755 11121.3886 24956.2618 23204.1155 33952.8277 76642.6508 260598199 nasa Nitrogen Assimilatory N reduction NA Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 11015.6717 10207.4457 6015.275 17422.7901 4809.8569 11343.8619 5689.0535 5661.4865 15211.3739 6977.9789 338063.3883 7573.5084 8635.8475 9068.1741 14511.5008 14511.5008 8989.2902 18487.3596 8253.2959 8369.8245 28298.5826 29851.171 5710.4566 4884.6766 12291.699 7349.4154 15539.1001 16891.4649 20722.2971 7141.334 31688.1542 13858.8193 22043.2739 14334.8791 302830888 mg_chelatase Secondary metabolism Pigments Chlorophyll Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 8812.5207 10834.2712 3581.6007 4141.4778 6271.6109 3663.3999 148590.9916 6820.6641 8559.6812 6329.6252 4106.9444 4106.9444 4322.3447 8434.7463 9898.638 6430.3179 12103.2664 6705.0554 3083.1833 3954.6133 13088.5942 3422.2718 14664.8903 8569.8219 11771.0912 4403.7651 5042.5772 5732.818 5198.5479 13300.9298 302915188 protease_serine_fungi Carbon Cycling Carbon degradation protein Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 10649.4531 40321.9311 8495.7993 3263.5773 35125.6197 3494.3039 16446.0828 15148.2551 52516.4255 1806241.9236 44303.4143 20160.1734 28328.2065 46332.7429 46332.7429 8841.3726 27530.3635 8384.5243 19799.5519 19306.945 30224.971 4579.9844 23198.9277 21978.8804 10192.1451 75078.0714 54853.1102 24995.95 10399.4419 13937.4064 11280.089 15134.9162 15118.2387 119951498 atzb Organic Remediation Herbicides related compound NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8224.8433 10453.3973 8825.6409 10862.2872 8594.9814 4649.9093 11725.8286 9455.0883 6855.9541 8384.2007 8309.0051 6991.9749 204805.11 10319.7202 9238.4032 12134.9615 5698.1177 5698.1177 9091.2894 15739.2623 9246.1193 11166.16 8579.0221 11793.7317 6946.8715 6429.1943 10325.5426 5135.8596 21780.4962 7339.7672 13620.6692 4965.5795 8220.6126 9108.5669 4648.3482 11544.8775 26278814 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 149340.0318 15575.0968 13349.7496 5957.6231 4508.1375 5652.8857 5041.2815 5554.1248 4588.3023 126512.3444 8317.5157 7070.6245 4046.5347 5776.79 5776.79 3729.6366 61411.8365 5476.0455 11656.9664 10201.4497 3635.9732 3968.87 5453.3838 6537.241 61636.1039 37960.702 7701.0102 3196.6704 7283.2251 4862.3336 5443.9463 8483.2756 374702220 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6725.8856 101801.8144 16516.2603 17160.6345 4704.2189 3595.7744 79704.015 10895.6714 9359.8215 11786.9297 14575.0418 14575.0418 5684.9685 11281.339 6014.3336 5862.9628 33060.2119 4940.2861 7942.9049 7864.0895 6083.3656 41614.5178 7959.9477 6251.8494 2623.6478 70838.2332 4394.8703 7182.82 5573.6638 284812469 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 26598.6271 42598.1202 14311.468 67323.3774 18298.0004 13337.227 16531.1264 13781.8369 22412.6864 35226.6879 20906.6701 516716.3328 29322.2242 33563.5342 54087.0401 27916.0259 27916.0259 23138.8509 42880.1008 25517.7835 28527.051 31064.5755 64439.4714 13071.408 14637.4457 33928.4079 23887.6989 43982.5993 19618.0456 27511.8228 20967.7123 20078.9798 20199.3739 12906.1884 24181.451 302466512 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 38463.6774 44363.3397 30378.9928 36964.5964 6756.764 36348.2143 147827.1723 34822.8748 14465.2338 29708.5372 36914.9043 941429.4466 31023.529 21679.6319 30979.5039 34713.0999 34713.0999 16470.303 84334.0549 33944.9863 20383.1251 47678.5045 39522.3729 28656.2888 12808.913 31716.2232 30741.3356 61759.8775 62796.6003 32242.5453 22830.3211 20247.892 45949.4844 31901.0067 57839.6062 226428749 xyla Carbon Cycling Carbon degradation Hemicellulose Geobacillus caldoxylosilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4898.9602 11522.2564 9910.8484 2530.7494 5588.6879 9173.6414 5197.8175 69084.1257 5106.3967 4321.3056 4398.7723 2153.2061 2153.2061 5693.8121 2429.1805 2219.0791 7486.291 2881.0161 7153.2739 4288.6325 6548.2931 4599.2658 2609.7659 3881.1768 2799.033 7071.9227 133754625 phenol_oxidase Carbon Cycling Carbon degradation Lignin Neurospora sp. A004 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 46373.8408 52717.001 6404.1266 21780.5006 18671.5578 28846.9738 41926.5916 20339.2859 72362.3359 58675.8867 450884.258 24252.2447 18486.3136 33262.7018 43774.0631 43774.0631 9399.9639 21601.9156 10311.1013 90998.3853 21865.8272 20456.9228 19283.9237 11620.1609 23391.2715 16961.7102 241762.9602 34252.7431 19512.2294 45384.3441 32504.6352 38757.0319 14296.2911 16055.603 113935746 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9276.1486 7448.0974 4168.6259 30701.2151 5085.482 9952.1592 13554.3458 2814.4084 7798.4219 7421.5292 3853.2473 170851.2348 9739.6599 9552.1339 7207.0919 4087.8478 4087.8478 5991.7567 14339.5062 14690.0392 14150.7228 10743.5276 13426.7768 6863.3766 5452.5993 13515.3866 8411.9669 19994.6485 7797.0741 12793.9751 7606.898 7269.647 7576.9767 6600.3935 18955.5998 213022511 nrfa Nitrogen Dissimilatory N reduction NA Salmonella enterica subsp. enterica serovar Typhi str. 404ty superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8488.9983 7011.0009 24848.8956 5025.4354 14187.1825 20278.5131 3086.1261 8581.9764 40344.2854 12640.1785 211282.0146 7701.9634 121271.1188 19794.8919 9672.8602 9672.8602 5232.7988 45908.5234 17517.4615 10237.3981 14021.1519 7008.6118 8463.2619 10064.1535 13031.5117 9381.9767 30556.4166 14282.9082 26883.1123 17608.0299 10042.4797 13076.3469 24986.5442 22317.6823 25169134 hdno Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 16840.2774 7917.7704 6368.2064 23098.9846 18362.3871 14650.4546 12655.3368 12025.6114 8095.0968 22902.0323 13551.5354 249772.8111 13778.764 25477.0338 22391.8559 43806.6085 43806.6085 29878.7407 15643.8386 18978.0021 10795.5358 18233.6873 24586.0091 9931.4248 10756.5991 30554.5457 21984.9012 60483.1642 24626.9308 25353.5592 10767.288 13581.9488 15100.5649 12092.2998 19339.0191 290582592 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5775.2309 5299.4916 4914.3306 5446.4838 3614.5877 7367.5745 8045.3038 6602.1025 143062.7476 15255.369 8440.3866 5274.5217 2644.2902 2644.2902 4726.5756 13671.3078 10358.6585 12357.0706 11023.7364 10268.0597 5009.627 5683.8522 12374.3617 12146.8288 22337.8676 10565.5781 14444.3259 5814.124 6915.4986 6531.685 5156.795 17922.8295 328880544 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 160968.1503 340990.2393 87437.4525 153031.1563 187772.0796 100074.5091 152570.4783 178752.702 116133.0778 207341.117 180021.9429 125330.4928 2303083.3141 118729.2543 193243.8327 131100.938 140098.2262 140098.2262 96479.9083 197324.8594 98273.2197 96832.1813 178146.9295 179942.3995 98352.7944 112604.8377 147406.0482 132891.7128 536461.5965 212683.9697 186317.0556 123962.7028 85139.9008 153074.597 70717.7885 370973.2198 374619522 linb Organic Remediation Pesticides related compound NA gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5694.8827 6130.8166 3080.1252 3200.5069 4019.1769 4363.1011 78874.2566 4980.1474 4259.9069 3975.1468 7924.0068 6125.7289 8156.7889 4788.4986 5295.8454 2420.8267 2542.7656 8259.2695 2430.5179 10042.5741 4628.6791 6393.3409 2364.1749 3342.285 3534.074 6748.9249 326207015 catechol_b Organic Remediation Aromatics Other aromatics Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 7289.0221 11907.2333 4680.8871 21571.7345 2575.3266 4088.6585 5636.4069 6826.7705 6919.1689 833326.433 10578.8141 13603.4024 3513.2973 3513.2973 9401.1767 12356.0007 6028.6323 7367.9586 27826.8709 6147.6725 11677.5572 6670.1234 8937.584 39346.6958 25081.7164 11712.2863 7504.6943 4021.7493 18461.1121 5052.6656 3605.2866 10737.4835 219965925 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12277.445 9617.6115 4069.513 18315.965 13765.5976 4247.4351 6017.0583 4586.9029 17443.5891 10069.1294 120549.8866 6569.8536 30196.9156 8050.3258 143283.7916 143283.7916 2961.576 15199.6823 5856.3465 297665.1224 9830.4381 12496.0784 4292.3398 4820.4259 10497.1127 5412.049 25147.091 12650.6781 27832.0747 7205.3219 5162.9469 8036.506 5815.5096 8255.0017 158514512 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4877.3907 4622.2517 11240.1783 8390.7061 3394.6862 2718.316 4333.4701 3700.5744 3506.9734 67286.5142 5832.4134 4233.4464 5330.1916 5245.787 5245.787 8877.8324 8268.3718 5090.1571 2926.8327 4044.0328 11889.2974 18410.4596 50437.258 11476.7841 14565.7985 4520.2053 4416.1285 3829.7558 2044.7571 257055345 cmci Organic Remediation Aromatics Other aromatics Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 19026.3576 12784.3172 5358.802 7695.8196 8635.927 7037.1328 16307.9151 3908.7412 284679.8567 32423.7959 8239.6723 7531.9351 3654.6938 3654.6938 4840.5944 33641.6155 7542.9154 7138.281 13865.672 9714.6569 6541.3142 5116.5736 9852.9767 7113.6177 17402.0252 9147.0998 11051.244 4438.8105 5069.7064 12500.1985 4980.3287 12202.701 239996945 xyla Carbon Cycling Carbon degradation Hemicellulose Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6419.3836 36782.3513 4133.0986 4489.1903 2757.6683 5768.0436 5897.8156 4136.4552 83790.7683 7785.2212 4876.3087 5839.623 4355.6303 4355.6303 3893.9175 14148.9812 8105.4025 5719.335 8965.6169 6612.4481 2569.9662 3345.1566 7220.8843 2955.4996 36366.6336 21517.2438 8613.6912 2966.6409 4107.1419 3536.2017 3143.6827 16072.8395 126626875 dehh109 Organic Remediation Chlorinated solvents NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7162.7348 8798.5576 5922.1058 19022.1592 2015.3212 4476.8694 15620.5894 9205.0976 11779.8959 15669.0865 6484.1282 6484.1282 17332.759 15164.9521 8057.5879 12295.414 7789.0355 9981.0427 7337.9011 9355.8369 16724.6609 4489.585 29054.8207 16323.9031 18608.6605 81581.2908 12590.9745 9487.0952 3973.8155 14525.8902 170767063 amyA Carbon Cycling Carbon degradation Starch Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 16205.8755 9954.5415 19322.0266 3114.6197 2160.2611 4598.7246 6605.1138 98982.034 7815.3597 3580.9698 3580.9698 13723.9649 6348.4062 3633.669 4416.677 5138.3303 2275.206 2473.6167 2492.5853 25754.5494 6498.6879 2937.6873 3867.6739 2004.1021 12380.8408 3378406 mdld Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5135.6834 6228.3371 6847.9812 5371.0738 3351.2776 2457.5491 3814.54 2718.5198 113912.4893 752347.8317 2013.7427 2013.7427 3284.1488 6480.8233 6180.2627 4979.7798 21303.9064 2111.649 2665.8434 7849.3201 2654.0607 11365.5298 5400.4022 5578.2848 4124.453 4179.5933 3060.1637 2161.433 6042.3803 389863775 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 105981.636 20112.7353 42280.8421 740800.8954 31263.1056 18909.6099 140087.7011 78193.4645 91295.949 85234.8129 168276.6665 74557.6413 1012965.1665 63975.8733 149505.4825 67911.5165 86537.4174 86537.4174 97553.5312 140074.9554 48216.8685 67828.0342 280801.2622 128685.2167 73755.3192 84643.5128 153642.2286 65343.0098 457104.7427 178788.7522 86122.4293 117520.3886 52078.5288 75621.6918 49917.0573 143423.3743 374310679 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 10150.2257 10375.5856 9205.5927 10497.2557 4764.2401 7486.8846 6995.8904 53550.8922 12015.9605 13104.2348 7413.6064 213438.3728 27871.1873 10432.8689 15684.9226 6710.9031 6710.9031 7773.2267 16124.0015 10598.5935 9107.7983 11848.8419 14989.3334 5582.0261 7885.0763 12089.0402 5230.2981 25372.3285 5448.5558 14076.5097 6853.4025 12554.7082 9347.0206 5962.6262 14286.979 373548346 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 20703.7841 26729.3522 18549.436 14188.119 10014.3265 9266.31 7506.5027 7697.5365 13046.473 12092.2256 117544.0313 11438.0114 64807.1098 11577.4176 11308.0484 11308.0484 3831.4341 20577.1592 13228.653 101439.3397 14625.0827 7617.9426 6774.795 12749.8775 12892.6571 14802.5958 16481.9419 25546.1035 16007.7367 6904.4396 17564.2115 12390.6635 8027.9823 13265.2638 4884719 sdsa Organic Remediation Others NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 221160.6046 69354.8186 326870.7414 141345.9902 1093588.634 133437.2212 110105.2909 236641.9015 154940.6883 164482.0988 374380.1185 102918.4355 9296000.3404 208975.276 305840.5253 751679.6204 370967.0307 370967.0307 137713.335 260560.03 124327.7013 321823.8276 191887.2354 600748.4061 126933.6369 106467.4959 200213.1277 156619.544 411763.6596 171072.6541 203513.8342 147736.826 145200.7136 197971.3386 120299.0765 412064.2123 340552872 terc Metal Homeostasis Tellurium Detoxification Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 14342.8892 10926.6007 13369.4461 50991.4834 3234.8592 8350.6174 98073.5611 7297.7573 14882.603 7525.8549 122002.2763 47305.4355 9305.8491 16242.0541 185784.9552 185784.9552 11028.9187 25873.4678 10575.3747 6411.3607 41881.827 6896.3909 5525.9319 11883.7614 12265.1895 6975.9863 41330.3097 55822.4785 15940.5486 5446.0544 7327.2784 40679.8362 8451.3356 8979.8396 323374071 oxdb Organic Remediation Aromatics Nitoaromatics Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 34562.6115 15852.5798 8288.1853 12000.141 11321.3072 22430.1583 8830.6195 24478.581 20598.0549 169315.6786 20784.0717 14860.2444 23077.4944 10621.4547 10621.4547 10821.3462 26155.5798 14207.819 26143.7579 16589.3968 121665.4799 23919.1098 13958.3286 20985.4578 25463.1679 31001.9605 16627.2006 27248.3655 7451.3794 19555.3958 17878.5579 19606.4569 14828.4163 359296275 amyA Carbon Cycling Carbon degradation Starch Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 18899.6294 6819.4419 12389.0038 23834.3632 10989.9208 11077.615 11841.5727 9380.4121 13044.1957 14124.3815 19899.8838 293454.1022 21220.3233 13504.2397 16341.2787 11678.9072 11678.9072 9262.1964 44260.8086 17780.3405 40879.6049 16785.0698 15333.673 10251.7906 65306.5363 18336.567 7814.7134 30716.0355 18987.3169 134683.6774 9363.2436 55650.7673 18118.408 15912.2025 21816.9404 156861718 pula Carbon Cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 4564.0658 15980.2234 3452.2059 3962.1037 71029.4156 4864.3802 4864.3802 2536.1128 6337.7766 4882.7823 7072.1741 2411.509 2561.3353 5808.0722 9262.0078 4720.0569 1750.4448 2851.971 33669028 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8435.9846 5221.7247 7045.4388 4800.6949 6350.8642 6507.8574 9118.6964 8310.3424 158830.2483 9157.495 5460.1837 16406.0235 8510.4823 8510.4823 4064.9072 15445.9332 5489.7924 12143.2053 9857.3552 10006.8 31679.457 9654.7639 5930.0861 4589.489 28421.9143 8997.1173 12470.1782 8878.3085 7620.4642 9162.8803 2541.7415 7306.4508 386402302 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 23088.0375 9701.9322 11026.2612 20436.5926 10044.6839 10193.5576 5078.2749 38739.8946 9821.5595 7620.6623 251692.6645 10253.2 13753.0398 7346.1488 7198.3263 7198.3263 6346.856 18400.4591 11431.1426 65318.9749 14093.552 31116.7145 6505.7004 6813.5471 20277.6355 6811.7809 28566.2934 11372.9649 16034.5998 11531.2723 8083.9189 9362.2841 6865.1445 34948.3214 281357717 rgl Carbon Cycling Carbon degradation Pectin Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 11908.7835 33395.3105 513577.2465 95182.5756 6134.952 30724.9767 2841.7232 22158.95 28002.3832 11975.177 582161.2364 36669.1389 36313.4315 39262.504 21723.334 21723.334 14963.7825 43755.4945 32562.0098 4008.9125 5160.3569 13632.7559 21200.1341 19966.4 75695.4298 13415.9926 111505.8926 65798.357 61150.1807 36183.3111 27624.287 29989.5688 6519.8687 62197993 nosz Nitrogen Denitrification NA Brucella abortus biovar 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 27117.4916 17369.332 16809.2747 14446.1706 12783.1491 8288.4733 112095.692 12756.9009 118078.6099 16052.6005 19780.7254 5789197.8004 24167.3431 26356.9391 56340.1817 19595.6408 19595.6408 30735.8306 36270.7571 15866.1214 21150.9784 26078.8779 15816.79 8783.8488 11172.8019 26022.6427 10255.4368 34246.5223 22401.4389 37601.1952 9330.3126 22305.2491 27229.5998 9044.4304 23131.1493 338170990 aln Organic Remediation Others NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 13543.0667 12291.6585 20234.9519 5257.8615 8063.5214 22259.3313 5052.9826 8954.1696 10351.2514 8405.2799 348212.5474 8020.7394 10203.3758 11394.2344 7539.8491 7539.8491 16654.0065 15809.9136 11814.4061 10966.6577 10214.3453 22505.2166 4651.1514 5817.2335 19465.208 5483.2941 27107.4632 13261.6049 15884.195 7628.2214 9331.382 6718.4955 132579.9256 78159.2789 229610703 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13762.9198 23138.5062 67881.211 8797.9212 3821.7052 3821.7052 5334.3391 26054.827 3640.2353 6362.854 3322.6105 12588.2773 8907.2853 7420.9431 8865.0108 16745.1975 145586416 rubisco Carbon Cycling Carbon fixation Calvin cycle bacterial endosymbiont of Idas sp. superkingdom:Bacteria; 5077.1993 5375.6245 4193.1682 15864.6582 4893.7771 2087.3594 4411.5233 2462.9773 69351.4148 8512.3704 3538.5128 3899.1022 2743.5722 2743.5722 3129.5163 7197.9585 4807.9572 5303.8961 11886.4631 6732.343 2833.1657 3266.1676 3182.0257 10815.5344 3381.2991 8575.8265 2638.8821 7885.583 162707951 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7132.7923 6201.1116 8103.014 6510.0666 8120.0477 4225.1135 220040.2858 5460.6644 7559.7085 7288.9076 7288.9076 8935.8271 13114.1948 9098.3786 10421.8101 10475.2209 5524.3707 4422.704 3559.1303 7798.4021 2908.1413 16294.8814 8208.2291 8651.0964 3398.7124 5623.832 4024.5308 4351.2058 8204.9438 118656366 alkb Organic Remediation Other Hydrocarbons NA Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 98253.6693 12601.731 35603.6874 292760.3801 9650.933 13653.8613 19942.0873 13302.6761 35654.4214 19096.4911 305851.8725 18341.6494 27133.874 17506.7951 12465.9724 12465.9724 16809.4604 32435.6095 18890.6237 31223.917 55046.9275 27333.5871 69133.2649 20011.9584 22503.0203 17916.2772 37246.0534 32013.175 25946.928 19028.7233 9411.4697 14341.5905 11673.4396 43174.6376 284034683 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 5752.5354 9911.7651 24180.8783 259020862 mer Metal Homeostasis Mercury Detoxification Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 5017.2265 13737.9464 3426.8611 6317.5917 6819.4278 4383.4636 8845.0922 11389.5378 6637.7281 11559.5543 11559.5543 4817.8522 17517.8229 5850.8255 4964.3037 7770.3771 16841.8022 4572.4623 3800.5345 17269.1517 6540.452 17287.8561 9260.152 7371.7323 10428.7638 7178.0867 8765.5079 3295.972 158329924 pcpe Organic Remediation Herbicides related compound NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8480.1695 7640.6318 160647.4763 2412.9456 8094.2987 4721.0316 12035.5928 28535.497 3147.3158 209249.5578 5916.9808 6154.2631 74141.7667 6049.5945 6049.5945 7754.1562 11292.7571 9482.0319 10299.0195 7062.1587 9039.5731 4304.0675 9395.3605 4980.8188 16174.2143 14051.0345 8385.592 2943.0728 7357.0749 9368.5557 3716.4323 8380.1665 291535607 amyA Carbon Cycling Carbon degradation Starch Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 25533.1608 83800.0279 342805868 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 34153.9679 161303.1684 73629.9707 30688.9109 9262.3881 17528.4887 12971.1841 17148.4712 44971.1095 29731.9912 595425.2018 43594.3777 25615.4011 15974.2203 17554.8926 17554.8926 66105.9109 54857.6425 341251.5001 39960.3206 29449.8364 31379.0493 75015.1207 57856.1476 45488.4724 27934.4511 39046.2125 84268.6643 122768.6053 88797930 chitinase Carbon Cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6440.185 9819.6807 8189.6226 3855.3675 24834.0763 6453.8638 7996.4569 47235.4927 7098.0341 5549.6609 5549.6609 3522.5693 22523.0293 5450.8393 18708.2188 38588.9673 7368.6359 6670.3937 3385.7817 8296.2984 9545.192 17350.6114 6644.552 10603.4314 2910.8332 5129.865 3366.2051 9599.3803 60527.1974 338311247 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11879.1198 5814.6463 10912.7174 5078.7507 3702.2308 8214.3212 5612.2819 156598.2182 7568.5652 7607.6607 4443.3191 4443.3191 3444.6571 10015.2694 11939.6361 4745.026 7865.9182 8801.1211 5607.1553 4878.4443 9837.7282 15305.4358 61503.2056 11256.2817 11243.256 5244.6678 178249.8031 7941.4986 5676.5186 9635.586 392415070 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 4069.5972 4205.5024 9733.1992 7101.9281 5849.853 3358.6963 96019.0211 4248.2789 3341.1039 3050.0058 3050.0058 6921.5907 3671.6948 35535.4137 7798.1968 7645.4889 14130.9629 13591.8117 4117.318 5875.1427 5458.5665 3763.1169 3027.5069 9046.0827 218759964 nifh Nitrogen Nitrogen fixation NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 11724.2598 26340.0806 6777.2959 8082.3545 11918.7265 7045.2852 4267.4329 6807.8588 6264.9381 8816.4761 147618.529 11487.1038 7181.1796 5499.9235 4139.9871 4139.9871 6818.7706 11807.8032 11310.4652 6189.2765 26519.3693 7708.226 11865.068 6112.0782 19858.0976 4173.7432 21043.9477 11556.7748 11539.2395 5319.735 8318.9275 6452.5425 4004.2819 7791.3491 110632550 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 21490.3512 24863.3588 235687.3293 17523.3147 82629.4736 19040.4721 27865.0422 27751.924 41399.4187 14214.0146 20999.7789 20342.6187 466267.7207 30772.545 22258.527 65143.6739 10515.1763 10515.1763 16360.5817 32881.42 40592.8655 22330.8132 82047.1313 21452.6131 32126.3378 18877.915 31298.3967 17570.5558 64058.9252 25771.5425 37164.6355 54247.5492 19703.941 18698.3654 11585.8105 176730.5758 333927772 fosa Virulence Antibiotic resistance Degradation Serratia sp. AS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 21155.6951 9551.5376 6308.3683 26706.222 19481.0845 39781.4353 5150.738 12650.6175 18651.5197 126689.9365 9385.7925 11824.1802 16659.0404 9642.2245 9642.2245 11061.9099 14755.0014 11207.1794 16126.8895 19425.4984 16580.2959 8105.1069 8149.9258 10325.6453 12170.6299 28513.947 21742.4512 18948.5183 7037.2296 17283.6089 15976.6559 6088.1836 10339.0622 46409008 alginase Carbon Cycling Carbon degradation Alginate Sphingomonas sp. A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 43361.6187 30479.094 30553.3087 28506.2355 22565.6521 19915.7002 32023.7049 28876.4367 23900.3254 31684.0867 36666.3385 16112.3709 2226769.1659 55785.0176 35490.3401 24401.9243 22828.4535 22828.4535 19534.9349 37520.9066 26667.5991 31338.2613 41450.819 41619.9005 15993.5307 16694.7027 37648.5251 63893.6735 53811.4986 24926.9525 47535.7202 15114.0802 20518.8014 23255.6023 13839.7269 43631.0112 126735928 pgk Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5902.1645 4149.1426 10713.5095 4989.4269 3121.8245 5898.2865 6883.046 6135.8761 83097.7243 6335.0573 5529.143 5529.143 8782.1315 26224.366 7991.7891 5271.606 16202.9948 30539.59 54965.2521 4456.837 30580.9851 63345.5695 21601.7592 11804.5947 19472.2562 3367.4886 12978.3351 5335.5571 6050.2239 124866.0449 218564186 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 19009.1172 9380.0138 4376.9803 9001.6701 2390.9424 10624.0631 5103.4471 4923.9874 6252.6254 14216.935 164565.8907 5899.0311 82497.9625 5751.9666 15731.923 15731.923 4565.6556 10173.4573 4790.3135 6036.2981 5677.9954 4628.9707 11177.8001 21211.1101 5925.5812 26946.5873 5674.1518 31405.775 1683.1894 6449.4844 6226.7467 2194.0145 111073807 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8176.7673 11041.4175 4121.6882 8908.8227 7523.9987 11447.3606 5009.3961 8624.8284 9485.8106 8565.2258 194243.5808 30621.8376 11338.222 6932.6367 5010.4807 5010.4807 6470.9344 17009.9305 10702.9635 11116.4985 15089.7866 19231.0178 4796.8887 8659.2086 17128.3507 16520.119 37781.6269 8753.1324 14895.9739 7739.8685 9852.3077 14438.78 6584.3448 13510.5662 223714334 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 24265.3261 5313.9661 17276.0763 8805.7047 2615.1334 47701.9242 8895.5777 6718.2705 163456.8036 16644.9861 26227.9427 44592.138 19749.5262 19749.5262 10325.4857 16275.4135 11255.4538 7500.0032 10369.0312 10368.2508 4381.3947 4913.1355 15384.8517 21704.4675 37831.3197 10524.6794 15634.2941 6375.7859 7490.9839 12292.8764 6260.416 8137.0632 389796736 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodanobacter sp. 116-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 132683.3003 35596.1262 151812.8724 15240.328 27417.8653 10666.2618 63310.5504 88345.4589 368954.7754 47265.9223 152819.804 88166.4918 1459491.9952 52626.2352 79958.8851 71995.5379 109112.5578 109112.5578 63960.6283 113937.4562 88274.5353 127367.1921 151251.3582 103432.1195 47569.4581 69055.2546 114262.0181 131663.8844 206012.6168 120685.6586 236926.1553 101589.9561 71270.7131 95097.9543 45040.204 97967.6102 239988087 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 62268.7982 231370.5331 37582.6506 56036.6232 18377.06 25461.1357 33686.2598 15782.2825 28920.2355 53224.2969 27057.6215 536376.429 37925.3876 320304.8687 64610.4882 54772.6485 54772.6485 28802.7682 52010.0842 47743.6706 46104.5156 52535.7712 43442.7502 19868.1154 312961.3572 38740.0323 128827.3232 64382.2125 86341.6569 80464.2608 32933.378 30427.1466 29619.7369 12790.5764 80488.5436 335881688 amyA Carbon Cycling Carbon degradation Starch Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 13868.1094 4389.9723 68722.0289 27290.6321 11293.1727 19880.2846 5889.6776 8289.5598 17783.5784 8430.1552 11661.5093 25328.3804 30594.6707 17941.09 14769.8478 14769.8478 17763.8024 42173.6037 25803.1747 15875.143 16526.8148 63949.2784 5480.6082 16860.3853 33259.0698 13342.5604 58712.6966 28442.7578 42124.514 28435.8153 11066.4158 25909.7989 9138.5141 21229.6141 374563435 amyA Carbon Cycling Carbon degradation Starch Dolosigranulum pigrum ATCC 51524 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Dolosigranulum;species:Dolosigranulum pigrum; 4651.6525 4612.3221 2722.0489 3999.4635 3679.1259 74135.2514 3767.6665 3342.2707 3137.3764 7202.8269 4817.746 4753.0366 5067.9503 4033.0627 6997.1193 2015.7145 7564.4524 6248.0461 2254.7972 2826.5586 3442.9393 4780.4102 1395141 one_ring_23diox Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 17943.3994 12243.99055 16092.84375 13995.3466 14811.1743 9304.7539 12232.5218 12867.1794 14252.95 9530.63625 19860.24655 20713.06965 11834.93205 11834.93205 14851.6068 22677.2561 13152.89995 35268.09275 18412.45635 17307.67895 7405.90765 19825.6501 11421.48615 33536.29875 15182.7588 21829.3089 14417.48765 27498.4751 16949.7625 12773.9651 15173.0827 343806597 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 27866.742 10763.2643 18888.8293 42264.4134 11801.4061 8525.1383 10908.6977 40212.4263 16851.7888 24592.3835 31212.9487 388764.9 196123.7744 45023.3507 16734.943 19297.6328 19297.6328 14838.3845 72505.7336 22392.644 46196.9326 48926.6435 28327.4288 31582.0133 19002.8881 33202.9278 30220.7064 53337.0419 19956.4783 35791.6849 39433.3017 21241.5709 77860.9646 26085.5085 38037.2037 392086751 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus 5S-0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 9531.4716 2723.2684 8966.6351 39976397 pec_Cdeg Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5258.6127 6443.0861 31990.1524 4491.2771 5352.6367 3676.291 4582.7851 3853.4121 118041.4281 6044.9016 6071.1262 7650.6328 4785.5442 4785.5442 4440.5136 10195.0947 7885.5527 4023.61 7545.2578 2835.7398 5011.9935 13070.384 4232.7223 15592.8478 8410.0105 11112.9455 5680.2865 5208.8781 4591.8521 3995.2809 6666.8736 333601856 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4928.5732 29782.0961 48415.8424 25394.5097 14174.1694 15558.9159 6054.5103 7244.4879 42881.3105 8169.0195 19840.5746 6268.9867 159633.1439 11753.1056 62321.9715 15194.9015 11490.9941 11490.9941 5137.5048 18780.5387 12746.7068 5949.6442 24323.6814 8194.8031 5386.6864 11932.0581 15088.4008 5172.9113 37720.803 20682.2111 18131.1009 5356.8869 7881.1177 6028.7574 5010.5424 6121.6357 365419928 vana Carbon Cycling Carbon degradation Vanillin/Lignin Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15808.6829 21247.4306 13154.7919 16626.2387 12577.5145 8021.4731 12476.2435 19040.4171 16789.0282 17862.4426 15057.2424 464630.0468 11667.1158 26468.4586 16049.3297 7965.7365 7965.7365 8730.2528 33993.5658 13131.6819 14354.9803 12841.7708 32473.7574 8965.0138 10247.5939 16386.8452 13050.2932 41088.0259 13975.0962 17742.2639 18190.3009 10620.2884 22284.6745 10556.4071 19064.3312 404259180 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 21684.6874 25395.4456 282726.4606 47915.4769 5023.4437 8957.9869 3253.4135 13826.077 11964.3257 4114.6505 171824.6086 13032.3121 12231.7031 8821.9097 4736.277 4736.277 12997.8651 17822.6575 11096.4651 9911.3501 11414.1801 19597.301 7862.2537 7612.1713 11065.5446 7030.9383 20578.8008 11383.1044 10660.6459 4976.5059 9255.6509 8801.3338 3846.0241 8386.133 339018559 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 39281.2729 16006.066 65152.2565 41627.807 71898.1455 21913.0537 28806.654 25431.6148 15866.1084 33899.5311 36634.167 23048.5642 670641.2795 36826.7042 42190.2729 44276.8485 26188.4325 26188.4325 20055.4087 38371.4493 30151.5592 64314.2581 29308.6879 46186.6235 13564.005 18404.3723 44328.4123 12616.6714 57867.1547 44887.1815 40480.6872 16805.6469 20180.7011 20476.8051 16193.0152 34992.8416 347578453 arsc Metal Homeostasis Arsenic Detoxification Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 23722.6266 17185.8431 12929.3383 34139.7008 125237.5425 28726.3941 18023.5301 30911.865 22565.626 20713.1178 42486.7232 30418.025 782602.7919 32800.9982 38255.2368 64677.0633 75518.6835 75518.6835 29741.2169 71736.7958 26925.5223 32486.3786 20907.3397 32852.3472 15136.8033 21858.0536 45596.3854 18033.3063 85899.6656 49712.0649 77118.1775 19652.5024 39535.1557 154603.0013 9607.1811 39558.3801 333982851 arsm Metal Homeostasis Arsenic Detoxification Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 20277.5345 11802.034 45641.58 5980.4994 24335.3861 3686.2868 8422.8179 4599.2696 11839.5648 575016.5133 6149.6963 6302.8781 10396.7947 7703.2977 7703.2977 8877.1158 8316.0512 10505.1802 5339.0578 3162.0267 19350.2641 8538.3549 12455.3746 11200.4422 7008.4971 2087.2334 4256.8914 9053.8848 3036.5508 7239.128 118591563 tktA Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 87119.5686 6788.5517 3367.5271 3543.114 2181.844 3836.4831 4074.2405 3089.1174 61791.5982 8444.2717 12571.59 4693.1669 10405.2673 10405.2673 4054.8623 8219.5674 7323.4858 5733.8233 5212.8384 7369.7339 6915.0057 8743.4442 13550.8815 4941.4434 6710.1102 3333.7025 4569.2726 3637.8801 2975.438 4840.9546 258576799 nirk Nitrogen Denitrification NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 42310.9141 23397.6425 19400.8142 26390.638 12825.1149 40860.828 25861.4047 38191.3848 18319.9005 42279.6565 46228.8707 1234824.4874 34099.9285 78301.3966 93915.5504 190052.1233 190052.1233 26034.8911 59270.2437 34518.4118 90887.0235 54726.8207 34261.42 22074.5567 224714.5867 32880.7896 30381.8994 108437.7899 230169.6697 47981.656 24763.2225 31625.591 35443.5854 23330.7454 41210.8609 227543193 gdh Nitrogen Ammonification NA Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 140570.4385 7186.7558 8163.2544 4306.8608 5304.6706 12414.3751 4764.9174 21628.3534 11301.1205 11301.1205 9770.8957 4949.6542 6392.5859 6660.1386 3608.6386 3923.1688 9203.502 10183.231 13200.2168 24032.6591 6709.4024 2318.4752 5555.7287 3672.8978 2681.3286 5357.847 163740760 PRI Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 18893.8473 18838.3753 46641.5354 10550.7078 10928.041 4813.7246 7861.0883 8764.7112 7594.2178 12420.0261 13720.4935 5944.8545 251664.0685 23809.8501 13963.8007 15343.5565 11331.1469 11331.1469 10871.175 19096.983 17399.4395 31594.4216 24282.3706 18822.2995 15813.1668 8789.9716 22197.1128 7445.5164 73143.8236 21572.2101 32064.635 8100.6136 12268.7423 13307.8207 7972.9524 24204.7476 365905546 ppx Phosphorus Polyphosphate degradation NA Lactobacillus versmoldensis KCTC 3814 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus versmoldensis; 110607.7498 7771.2242 10972.8007 19067.2252 50058.9341 20712.2184 7103.4271 11946.193 9176.4768 5281.4661 292917.7751 11673.568 13633.0781 5395.0395 5321.0597 5321.0597 7576.3433 38971.3202 9543.4303 12946.4011 13680.4765 15448.3456 5901.8144 5450.8028 13425.3334 6673.4478 19706.491 7601.1744 12280.8678 6631.6838 8278.0414 9492.2206 6373.3961 19365.9845 359778537 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 310718.0304 197089.3224 225964.9099 134861.9517 230681.9078 141566.9524 135281.5708 270891.4112 137378.3091 224082.8095 276744.1506 233322.0818 3654107.2178 180907.2263 338473.767 477799.8339 252786.0336 252786.0336 158791.9989 170461.1538 158174.9092 176216.1472 303429.8239 529132.8215 142483.6921 209067.93 347479.566 140007.9319 382690.1288 283034.6039 354111.0383 240965.6157 251711.9256 215505.1455 308431.886 397547.3823 355376607 amyA Carbon Cycling Carbon degradation Starch Selenomonas noxia F0398 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 5636.9221 8506.3107 8145.4694 5108.8264 6916.5505 7445.2357 17432.6451 39428.9908 9580.8873 243171.0888 21120.4654 61922.3099 15162.0997 16603.6141 16603.6141 5276.3635 11194.4343 8082.1995 9420.8269 12535.9066 8996.107 3485.4575 15718.5037 11451.6696 34919.161 23385.4679 11040.1771 11501.3968 13021.1506 8741.6733 6892.9991 5471.5696 10271.6228 95111175 nitro Organic Remediation Others NA Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 6358.882 5056.9735 2948.5567 2792.6412 87770.12 3910.4878 9091.9411 3206.2158 7895.8515 4895.9523 3910.3804 6798.1076 2488.7314 2344.9032 5492.1633 8398.8387 4928.9412 5729.1777 3121.3072 2740.3741 157912382 TIM Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 6120.8611 7143.9417 4339.6028 2519.194 4004.6559 6758.536 6697.179 5182.7351 62860.8336 4482.3463 8979.1534 3515.1508 3515.1508 3625.4743 11508.0203 4853.6751 4068.1392 5657.2142 3326.574 5665.7348 9428.0373 4292.8859 6151.1807 5034.9755 7037.9925 2977.4515 4887.4626 10912.5363 385682439 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 4463.5817 1582518.7933 323528277 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 115606.7541 121640.9244 55851.2357 709737.6763 100181.019 118789.7957 207560.9896 104749.6586 60441.3527 148399.1553 133923.8529 1510848.2189 54345.5528 89277.5962 294064.0549 100280.1598 100280.1598 47770.3412 206214.6044 80725.2604 135564.0826 151585.8218 59409.7341 73053.3931 116606.5885 95526.2791 75106.7711 285954.7587 153491.9946 153009.2405 77800.9369 159661.2756 95476.8559 66493.3054 104876.7349 159036911 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 39098.2858 2603370.6118 33728.6854 437984.5175 23870.6542 7627.2563 11514.5293 196452.9792 10157.9825 14883.6041 30756.9526 88265.3259 353365.3292 28424.8877 47120.4794 98222.803 28247.7194 28247.7194 163099.0425 212049.084 21967.7532 26722.6267 86332.3941 18607.2406 16923.2716 32017.2613 54102.4959 131902.741 258245.5147 31812.0829 101269.6833 30175.3005 25573.9248 41094.5303 62239.2706 86096.3491 332173769 amyA Carbon Cycling Carbon degradation Starch Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 16578.1876 11499.3717 14070.6772 21000.3809 49969.7972 18344.6464 6252.2653 7113.7025 6487.2706 24189.7266 15987.6159 176116.9084 16889.1403 11003.8014 26594.7663 13811.6138 13811.6138 3927.1048 40160.2134 8488.2148 5476.7871 10196.0218 4100.125 6939.9529 20220.4617 2625.7264 12405.748 7593.2276 10247.6898 5245.8432 6164.9662 7125.7342 2820.2379 345299806 amyA Carbon Cycling Carbon degradation Starch Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 9502.2707 18139.1483 5915.7807 3858.7644 4944.4848 3504.3917 3504.3917 3870.0846 3897.5525 5082.2175 6293.2507 3498.8012 4320.0956 4913.016 6586.8126 22209.642 2830.7328 2986.2076 2636.0065 157321962 badh Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8222.1348 6521.1132 5318.9136 5322.3467 7048.132 6233.7482 5628.4007 7745.1751 9768.8204 386455.6485 8005.6515 8828.6518 3992.3579 3992.3579 7326.2761 18735.3294 7245.6022 9050.2873 11435.8604 17249.4397 4015.3765 4509.9665 9259.3027 4154.9496 20738.6224 5506.7477 11304.0063 6516.3798 7404.6415 5047.9895 5114.8225 16274.946 365274412 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7055.7557 3292.1241 3074.2963 14273.08 3977.6296 5845.0698 4743.4254 133246.9749 9990.6129 10688.5231 3927.8605 2868.0991 2868.0991 275209.1095 10135.6073 126461.6672 18303.9503 10374.4071 4473.3774 7501.4602 10681.9839 4432.9304 10142.287 16451.4023 12183.4721 3103.1715 9221.0386 11648.3405 7922.7526 5278.6968 83860065 alkk Organic Remediation Others NA Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 77460.4401 41380.1017 151765.4086 47476.1882 58886.8113 23767.4297 55912.9003 95475.3248 44962.4299 64690.6945 81860.7169 52943.1672 1512490.084 102089.9589 380815.4738 1687748.6623 88255.2919 88255.2919 61028.4756 94389.6414 75956.2792 749784.8141 66782.902 67134.7724 44137.9366 35832.3171 80524.2642 44830.7019 119853.5697 56320.9147 83969.5507 32284.409 54154.4371 63773.5341 32899.837 77983.0587 77378749 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9947.093 2685.2553 5243.0401 5914.5192 6317.7768 7271.7265 4442.7012 4116.6832 51053.0909 8473.5601 6899.1348 3141.4114 15772.3427 4964.4813 2514.1147 20665.016 6296.6973 2851.3887 37522894 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 52628.6117 22570.0309 139952.9623 32311.6991 15729.1508 27281.8596 149232.486 27909.9437 47450.0152 59381.1719 28683.3418 847440.8438 51201.1228 52679.7632 69875.7418 41833.9669 41833.9669 45955.3785 65445.3247 32728.8828 41845.3495 68641.9871 62507.325 23662.8647 35546.9962 45298.9458 36605.0926 88067.6577 26153.3011 48241.6926 47219.9069 46203.533 24753.6109 20878.6541 44853.2461 346644317 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 62606.7595 125749.3416 38028.9496 74349.6641 63154.9653 11873.0246 27292.5457 26361.1839 54028.4041 65838.5105 37348.2626 577145.1216 30538.2644 36407.0203 33608.4861 41368.6919 41368.6919 23253.2762 48213.8591 24902.408 28946.8113 85662.6628 128733.9135 21754.7529 55053.3086 216649.0199 24536.542 108082.721 31348.1787 58060.6285 27695.5225 39014.3831 41740.1085 18369.656 129111.9231 291197012 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 14030.0286 14902.6998 5611.0347 4896.0138 4872.9165 5563.8378 5366.7727 11556.3867 5785.6471 159161.7827 12042.3258 8434.9973 5448.999 3418.4956 3418.4956 6567.6026 17728.9009 12684.6546 11066.1409 18995.9286 18304.6515 6363.9763 6105.8428 56303.1051 5853.9365 22603.7929 8881.4167 12509.6873 10174.5501 7686.007 15490.4091 20032.6172 20461.0098 323366084 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 29589.1498 7913.2875 4104.6543 7419.5282 4588.4163 3892.8627 9156.4484 82225.4353 6495.5413 7605.1837 10729.3198 3738.9672 3738.9672 5065.9821 11788.9074 6035.1546 13953.9861 34619.9919 4405.0848 6494.7927 5334.7577 11726.7782 101968.9841 16891.5712 9424.1627 14089.0079 66831.7503 10390.7119 15332.9423 24377.5939 15835.1475 83317102 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 32121.1326 106617.7639 36600.7777 18258.1536 11811.0995 24820.5821 12153.386 43798.2572 20019.6564 22416.1648 12425.658 122632.1802 259705.9753 25748.6811 40561.0923 49192.3353 29000.478 29000.478 14418.301 43606.1707 15356.9277 69841.1724 48083.3906 27147.7502 37865.09 63321.3372 30348.9828 38873.2542 384793.1634 24139.6898 36264.2994 59820.8533 19418.4083 36816.4745 31771.7965 21685.0568 330897516 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. japonica str. M301072 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 19213.4645 14220.5146 18929.2353 4749.6765 9867.6663 10029.258 34019.0936 10634.7687 8284.9384 77439.4975 7176.8843 11800.4947 11860.0132 36931.0632 36931.0632 5822.5912 21639.7635 8713.7973 19378.3234 11546.5059 11606.4745 12528.5826 31497.2427 11996.3597 21955.7535 31028.2871 19357.0923 29741.3605 7173.9124 7188.2964 11332.0162 5678.8289 10574.561 115372537 linc Organic Remediation Pesticides related compound NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 66947.5726 9917.8216 15318.9708 11200.3093 5640.0011 7976.7761 41797.3488 8066.1012 11148.6355 35216.203 55758.6708 326615.5203 18704.8376 19883.68 92890.6841 23094.5896 23094.5896 15729.0344 35871.9022 17977.3652 21101.5504 59240.3354 29076.7656 29605.3378 15630.0707 19293.3891 11841.0866 57604.2947 63904.4415 27685.6542 9909.9214 18565.1322 22672.7991 10678.1899 28059.5772 119822199 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 18643.6718 5715.667 16385.0619 9986.476 6973.0076 12058.9456 2802.6055 18020.1665 14766.639 12475.2018 159682.0163 21736.034 10454.4677 13691.9728 7165.52 7165.52 8594.3748 16237.0701 10118.1184 7291.4316 7131.2941 7963.4365 6208.1676 7622.3085 23034.4127 9405.9891 13174.3905 17535.6467 16343.9192 8014.4741 12563.4369 8467.2512 5981.9573 15543.8143 328674519 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Carnobacterium sp. 17-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 4504.917 6507.1721 254941666 invertase_fungi Carbon Cycling Carbon degradation sucrose Capnodium sp. olrim506 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Capnodiaceae;genus:Capnodium; 36113.324 12576.2062 5903.0198 22361.7679 14049.0549 86935.5569 15510.8575 7218.7603 9766.6974 17461.4024 19610.2113 339281.4739 19492.8156 12132.517 36702.3972 13870.0775 13870.0775 6630.9435 19196.8801 11097.0143 20689.8313 27649.2939 13866.9416 10835.0524 8539.8984 12017.7389 12176.1486 69474.9579 19712.0503 19013.2072 12881.3717 19365.1691 15019.0373 8146.7946 16684.2798 319900875 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 13173.3285 16236.7953 15729.1232 14978.3574 31658.1618 39732.0441 15248.623 31078.7603 18415.2455 22282.9163 13754.0073 14200.0059 19524.4066 24374.614 32248.9557 11903.575 11903.575 22985.2047 38144.8071 21806.7138 20679.2209 34492.8037 41610.0143 9066.0928 26259.2773 24324.3275 13232.9422 46470.4477 30049.0715 25939.8011 23395.3635 13906.7038 20662.678 12010.948 38123.2379 197626495 TIM Carbon Cycling Carbon fixation Calvin cycle Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 62564.1931 53255.4181 15560.2647 299664.2477 16135.3251 19378.1733 27153.2494 6236.3784 14659.1946 39714.6084 34635.7695 482646.793 28780.9465 44704.0839 45852.4652 35908.5381 35908.5381 15101.2472 37895.1117 16626.6957 8215.676 21530.6385 29655.6458 10481.4422 20040.8248 204825.0533 11285.9206 45895.3356 82973.6597 56778.341 12427.0497 37660.9484 22379.1506 15150.7147 13670.4672 349700426 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 97218.401 11889.8219 10112.2513 18883.8094 13894.3842 47979.5961 39904.7136 13466.6444 57593.2722 27198.3213 946827.0774 27469.6058 65625.5072 27948.502 150881.2883 150881.2883 90015.4063 31883.3445 30270.8043 27619.0191 47299.5816 59929.2572 23471.8521 14216.3774 15916.3992 14390.8067 42902.91 28108.9564 42833.0394 66205.755 22180.0539 27519.7559 12144.8263 16003.2026 323366224 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5295.936 5237.9311 5247.8552 29153.5536 18238.6164 6217.642 8136.2904 5473.1294 4719.6251 4648.4781 120307.8039 11714.552 14436.8891 16062.8387 10536.0602 10536.0602 5593.6806 31817.9477 8676.2648 5652.4003 5302.423 5205.8745 32153.868 2617.215 16682.5702 14339.111 14239.9691 4775.2582 5186.4316 6031.0202 2493.4659 170027547 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 13211.5493 51225.1895 8984.353 5818.187 7605.3794 4282.604 3754.8911 2984.7717 8925.8292 6351.565 175300.5405 6162.9002 30791.8564 17289.8614 3980.9808 3980.9808 5032.8414 15197.9406 10084.2332 21231.3739 8132.0173 3213.9749 6231.2415 6175.9427 12678.7588 14914.6982 12486.8943 2184.8493 5088.3978 6726.1142 171698617 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8154.3633 21952.7557 6101.1042 192292.7327 3179.7446 9035.1042 3350.0645 4022.5433 80464.9912 139371.6877 8077.0759 6666.7552 19062.4132 9904.97 9904.97 7717.069 10844.2927 7139.6183 11013.4091 13017.9191 4328.6403 5931.1536 16644.8066 41586.901 10296.8548 27902.8968 2842.0846 7368.205 88059.8392 2644.0688 13689.6542 384464922 dehh109 Organic Remediation Chlorinated solvents NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 64668.4138 50237.615 31254.8076 27511.2782 28609.0352 17094.1262 44694.303 159026.5679 33174.0609 34365.7643 52221.265 20635.316 592020.1031 90244.1885 61187.3221 75301.2998 47566.7964 47566.7964 40447.0268 99954.0905 39378.9015 41818.325 195751.1194 48038.3776 15329.7695 86554.9656 61354.8453 31065.9996 73870.0469 59769.3866 68303.7663 47348.5605 27625.6605 35638.2067 32470.8822 58946.5315 144905985 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12952.1344 232637.6125 7681.088 9016.2286 5244.4036 16276.1834 7173.347 9352.6244 9348.8175 7514.5233 339567.3884 25757.6699 14786.9464 14649.4738 23823.3545 23823.3545 6736.4354 17736.3166 9977.7503 29873.869 13815.8067 13859.4269 6458.9031 6178.0447 13578.5785 5923.151 23711.0654 14055.8773 16909.9814 4003.911 9715.0848 15776.3736 6039.351 20605.5053 211906109 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 3951.1879 8028.1345 4588.7614 24687.8352 4832.1182 10396.4066 102504.6493 3388.6065 5595.0488 5174.0606 5746.5423 5746.5423 3509.0497 38377.0134 6762.5696 41011.6395 2458.0268 6661.8791 5413.5728 4183.7245 18260.9341 13059.9867 9197.9831 11231.0178 2099.8881 269125899 rubisco Carbon Cycling Carbon fixation Calvin cycle Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 55405.5182 438435.0387 47482.0817 107632.2116 89342.0419 47272.406 58967.9511 46551.4145 42974.5307 106394.9367 88676.7709 42405.5186 1303086.688 65360.6971 77518.4634 58847.8114 84281.441 84281.441 61808.096 86288.7764 62396.9112 74920.8637 101419.1523 103348.9482 123657.2867 52326.7702 68034.8972 52186.0311 124148.9104 73211.8278 96108.6616 43581.1182 52388.8862 58949.4512 45944.9514 92876.2646 313153431 ppx Phosphorus Polyphosphate degradation NA Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 8388.9586 11498.8117 19454.3667 8576.5198 12361.9448 15880.7252 9326.9936 2796.2509 17884.245 13899.076 4032.628 145179.2905 5774.4333 7218.5591 4582.8849 4992.2636 4992.2636 7132.8961 10348.1408 7069.6022 139905.1766 33889.0791 5674.5757 3148.4467 5624.9394 12891.1336 4168.2934 13279.0684 12735.6037 10372.4315 4634.2348 3879.7139 6062.0906 12815.5139 5929.7763 219860240 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 123438.9563 52244.6312 19218.8424 89833.8961 9082.7036 31977.0453 37469.9606 45540.5258 51968.884 63399.2486 46667.6886 635046.726 76869.2641 47284.2404 47328.1333 35667.0412 35667.0412 36219.5393 88396.4969 52807.6044 72066.8033 79022.8553 37755.0757 36534.3778 32184.9467 36001.4086 21706.0029 109576.5047 53148.2687 78315.8274 31543.1366 61817.7132 71168.059 24930.8573 38416.3204 337764133 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 16801.4834 13086.1591 11838.2759 58005.532 11815.2709 26811.6138 13555.2575 4534.9333 14464.7052 18250.2115 15672.4201 964147.7067 25825.9773 35306.6708 32337.4913 30480.4122 30480.4122 7144.6926 22938.5646 11137.5681 18976.4993 26241.8492 12098.3165 8661.7478 15295.3781 40603.6039 9050.0422 23024.9538 33518.9307 23234.6573 14100.3817 35407.0019 17164.1979 11480.3372 36753.3703 240009047 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 15743.2119 60318.5205 22593.4635 4872.5897 7041.1385 10783.7562 10094.3744 33001.4557 14735.4502 43152.6678 208700.6132 16556.0533 34938.5043 62885.6864 7717.2565 7717.2565 5488.2199 22370.073 13851.5587 12602.3866 16994.4282 13856.5471 6086.9156 42545.7562 23220.3908 29038.3501 37050.3922 43428.9674 13978.7159 13857.747 11356.8687 11702.7264 44879.3948 17957.673 225194037 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17744.9312 9712.1917 12073.5034 4417.9589 3111.0386 3374.8616 3515.5824 8674.0784 4353.9642 122067.173 13443.62 6447.3985 14403.5982 5762.4239 5762.4239 8398.9333 13497.443 8471.0597 4791.2594 18649.068 5451.6574 3701.5527 6736.4492 10638.9826 2991.1862 10972.6077 17217.5504 54440.4192 7007.909 15389.1023 8068.321 3070.3875 5616.3652 311227742 pcag Organic Remediation Aromatics Other aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 7753.3486 4346.4677 15632.6485 12182.5937 3820.4428 2945.2055 101528.8137 5453.3431 4679.864 11469.2378 6349.7423 6349.7423 3133.2556 7630.6796 7092.8478 150208.2484 16036.1242 4900.6075 13846.3339 5156.4954 13094.203 11626.0893 7787.8025 4772.0422 5651.7222 3991.4856 2597.7395 148474794 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 25369.8481 14936.2268 223781.0003 14083.6144 6958.6701 15728.4198 15954.7394 14630.9459 14941.622 79388.5192 13192.1058 395301.5583 20673.8382 26715.7253 16713.8897 12388.7469 12388.7469 14487.0604 28277.8117 21370.2357 24253.3381 27884.5316 140474.9824 150202.505 18886.9016 23731.0009 14795.8117 41657.5596 8005.9294 24379.1225 19304.7497 19227.3953 15270.137 10889.1213 26007.489 152985903 mer Metal Homeostasis Mercury Detoxification Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 4821.6576 13314.4673 3308.1276 7976.4413 4931.1776 4931.1776 12859.613 3359.2639 11867.3003 6911.5756 4768.9852 4301.1884 162451336 amyA Carbon Cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 5123.7162 11793.0264 21825.544 4925.2732 5568.9734 4677.6251 9962.0279 10095.1708 146725.98 5022.995 16419.3279 11606.4179 5259.0335 5259.0335 3675.8633 14735.8832 9898.5498 15261.5068 3852.0141 4858.9913 5203.6162 13209.2949 4981.2192 16085.0989 17071.2999 9512.1768 5905.5969 7084.0506 14286.1592 12677.8203 77906.6277 255707042 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18923.8273 9790.2495 154408.1883 5066.9531 27425.8018 12494.047 13609.6471 51548.4279 15144.844 284949.5811 16809.0028 13689.4487 14540.1448 15622.0088 15622.0088 65634.1043 34934.3161 12813.6124 24691.0942 17755.8103 28452.3756 13282.4756 23817.2942 42855.9588 26233.8791 47173.3424 28980.1786 43477.4764 26872.984 21339.0465 22218.7689 19820.8082 28687.0415 254818496 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 39307.7173 16293.9261 15289.9327 11364.2058 309648.0793 14923.6953 10037.5687 26081.6281 8201.3635 32243.8682 15334.1219 21018.3703 309322.3627 49007.8134 34178.5956 28900.605 16229.6345 16229.6345 16185.3927 26157.2964 24170.5376 25943.3247 14375.303 22584.6748 72428.8795 31505.7622 33659.8579 7653.7172 37542.4666 90933.3656 23705.7891 19796.9897 25413.6348 22409.148 7406.1429 48877.0735 262089776 arsc Metal Homeostasis Arsenic Detoxification uncultured organism 51520.8988 2794.7539 4546.168 5304.813 3569.7041 3335.2697 8084.4368 7214.5492 6897.3149 3715.9006 9234.2268 5217.0619 9009.1551 3997.6022 4294.6065 2369.8776 50844411 phenol_oxidase Carbon Cycling Carbon degradation Lignin Chaetomium thermophilum var. thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium thermophilum; 4011.1181 4001.0407 18006.8419 4653.1469 3096.5258 3164.8048 4853.5148 120328.3852 3900.9717 3887.8695 2993.456 2993.456 6744.9125 6293.0437 4680.9118 3895.2027 2595.5215 3100.0885 8087.1504 3068.482 10968.5101 6688.2876 7637.2588 3500.2139 4224.3881 3599.0538 2434.0393 5241.0475 110932002 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 4410.6781 4456.7741 5050.9558 4512.3248 2564.1423 86355.3441 4868.363 10443.28 3658.142 6957.3143 7218.2477 5370.6829 6218.0382 3871.0266 3381.3314 6292.0418 4613.0774 13416.7198 5990.7317 5702.5786 3334.412 3720.8299 4450.9954 6231.7932 7568.5736 21040221 exoglucanase Carbon Cycling Carbon degradation Cellulose Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 26497.7067 54169.6898 16613.9076 25629.7661 121843.5858 19098.7957 17518.5405 38788.0645 28236.3214 428991.6902 35175.1944 28122.6747 32382.3787 29479.6473 29479.6473 9681.31585 26114.4371 27360.4654 25266.05725 34131.2457 54727.5391 6993.6814 18198.7472 58242.9631 23872.2685 43548.5474 23744.5823 54116.2674 30096.2052 28845.2322 26092.6903 28081.3663 281355825 ara Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 13276.3246 19626.9777 3529.9879 30137.6753 12893.4439 40092.09 17064.0537 4702.5329 11160.8683 9656.4036 256722474 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 143471.6851 22230.4214 33774.4767 325559.5367 64310.89 8713.6924 23788.9664 27805.2663 39356.0925 105271.843 43289.672 45071.8389 1033691.2939 84565.0163 67233.9112 51468.5624 38980.1908 38980.1908 81236.3657 202504.2594 54107.3629 46406.5676 113895.2851 64196.3215 68367.9595 74515.1116 59080.4795 52221.7182 190077.8362 84588.2139 83878.3419 44983.4363 58607.718 50676.2311 77183.8559 85725.2184 383624935 aoxb Metal Homeostasis Arsenic Detoxification Halobiforma lacisalsi AJ5 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 36070.4959 5684.0053 6903.6316 3768.6678 5735.0722 2359.1034 9812.3639 18966.6421 8148.7157 175228.5424 11615.6486 65902.9446 9535.0943 6009.9851 6009.9851 7002.3476 18254.3296 13497.1902 18484.0385 22264.4352 10921.6165 5752.2247 13525.3928 10536.8871 9337.0666 43605.9437 32688.0277 65928.7701 11513.6967 10347.3411 9731.4713 26764.1689 20676.1384 209967302 PRK Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 12061.7302 9714.7937 44025.2615 6118.0229 8081.4909 4222.0092 6420.5628 9644.8607 6044.0034 155691.5037 12524.0281 7989.0333 6720.8737 3613.034 3613.034 7520.9886 11767.0468 11812.0896 5149.6807 26442.1137 7276.3449 5159.0908 4372.2838 11321.9391 6559.6425 24814.0997 12445.2766 14255.4442 5234.7924 5828.6283 6203.659 9789.3589 10111.0447 118468324 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 143601.7066 94594.6164 153002.8996 198532.8379 2861549.6301 147270.9073 78197.0069 241779.3764 336239.6637 208773.6097 185699.4707 133983.7734 7009432.2822 271542.3134 321568.0964 367322.0849 212206.7436 212206.7436 221500.5069 298230.0695 196271.0293 130393.2129 195386.5059 383777.6545 236059.5724 136334.5972 340086.7486 104622.0961 564870.7403 269525.5498 271961.7417 182803.3508 234061.5002 193773.8868 122025.4589 612913.4719 114320425 soxY Sulfur Sulfur Oxidation NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 12972.2414 731370.2085 7617.9963 52983.4263 9066.8059 6336.9481 3103.9977 7896.9618 8356.4088 18155.7718 9110.9041 169627.9263 10615.6491 7978.6944 11243.3134 3486.8962 3486.8962 12793.8867 53314.813 15644.4496 10503.8333 17369.9856 9610.3886 101368.7987 7521.3286 10284.0341 7477.5795 53068.5232 15259.1539 13926.2369 8964.6839 10262.4519 11920.9479 6748.8702 36032.0132 71848870 rubisco Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 47109.4561 11221.2816 21118.9151 63087.4898 42599.2132 18910.7642 31987.2549 191529.2027 55692.4083 22699.3899 22546.9521 18221.2186 550825.9833 39949.1331 31948.9478 42171.2949 43828.008 43828.008 31940.7031 33325.7752 35895.7414 240855.3483 55403.3456 42459.7968 290811.0815 27838.3452 38028.9086 12431.175 53005.311 56034.4101 42867.9272 20891.2428 20268.6509 22360.7261 12704.9818 42074.555 407278873 pcag Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4906.9498 4700.8849 18530.7822 2801.9808 3415.8584 6601.5041 22028.6817 12921.7047 8540.6744 8540.6744 4569.3696 12689.322 3980.2257 13452.692 5251.511 8271.0961 8214.484 6680.0131 1858.771 2962.6727 2247.3965 196183345 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 4843.7392 2265.7253 68189.9146 7052.9612 7091.5713 2701.7403 7472.5873 6185.5724 2314.513 8367.1833 4805.5428 2676.367 3007.2089 3879.449 2555.6295 167349638 vana Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 17334.2815 11016.4645 14688.2354 5834.5502 39384.7312 9364.8835 15389.4191 8230.7111 9927.1236 19005.8863 17729.8467 226624.4917 17354.5783 50001.8632 19599.0682 12560.58 12560.58 18854.0879 19728.7478 16247.342 13238.2529 19998.4029 14080.0071 10386.8395 7212.7615 20699.0712 9867.2094 32865.6573 20242.2349 21659.9593 11734.9605 11527.2506 12818.9323 10201.3496 20601.6094 1526617 bphb Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6462.1815 5078.5799 7381.7105 1969.7487 3421.5194 2306.6628 6985.0051 6512.7351 2838.6781 143704.2846 6293.1894 7724.858 2658.0683 8310.9286 6596.7871 8594.8597 7697.431 8910.1289 2689.2308 3921.5217 9344.0574 9122.6553 14029.5449 5730.7806 7778.5055 4660.9676 4207.7643 5809.5604 2585.337 8303.2215 153893454 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7224.5114 5851.248 8200.2354 16374.9977 10503.6448 8458.5512 3135.505 7134.7974 10381.7386 4232.2327 203704.7473 8531.0401 6431.9692 6979.6219 5203.52 5203.52 7616.5094 15091.7323 12755.4386 5916.5044 8361.2939 9772.995 5751.0052 5220.173 14866.8406 5797.201 19851.1792 13499.3755 12302.1227 4763.1868 6562.2479 7843.3105 5592.1363 15768.5975 34104622 endochitinase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 7171.99545 5245.3705 7789.9795 13524.6294 6316.7163 4310.622 6111.79245 10395.7556 5639.3353 112244.411 10614.8941 8810.7612 5195.49825 12121.8073 7241.6877 7973.43955 11750.13625 9660.53565 5681.2066 4499.0831 12584.3835 5321.57395 16185.6219 5638.724 10495.39405 6975.6649 8424.02145 6351.27095 5248.06305 14154.74465 350552946 tktA Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 36019.2251 22312.5795 30835.3662 27429.5062 128480.761 33903.2148 42760.21 52149.9864 37492.752 37167.0789 33345.8763 28158.1954 746985.7942 36043.4399 35588.2962 71062.0056 36597.2323 36597.2323 74595.3009 52540.3564 26772.6608 33920.2821 100035.6036 49905.3342 41033.3798 29517.98 35459.9389 25336.3941 116242.8973 45401.3533 38138.9093 26260.1367 28766.6567 38168.9547 29812.7799 112217.8571 82735456 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9805.3753 38418.7429 9427.9939 18840.6898 16634.8173 21187.0458 160904.6949 5425.3576 5669.7928 11537.4153 13071.4177 13071.4177 2823.4874 28734.0818 6690.6826 218828.653 4585.0176 5509.6253 4996.9405 4378.6301 10652.3199 10108.019 5632.8573 11570.6056 6964.7757 6927.0574 15432.3796 10601.9963 13529.5652 6473.4598 319945489 ara Carbon Cycling Carbon degradation Hemicellulose Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 4989.6078 23359.8209 7195.4342 16480.0856 12851.5063 7890.0403 3507.5447 3884.7174 7443.7454 7203.2216 2461.3856 2461.3856 17292.5933 4866.0955 5600.9011 12916.7971 3850.8022 6056.3915 2276.1025 13109.2264 4924.2643 6097.7381 3049.42 7050.8668 4212.5915 2531.0725 120591879 cysJ Sulfur Reduction NA Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 5291.43 29730.3027 4143.7932 2938.1184 4654.2561 5965.1636 2115.1368 2115.1368 2328.2574 4885.7352 2467.356 4354.4194 6237.843 2284.3392 114321859 arsc Metal Homeostasis Arsenic Detoxification Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 33388.4862 15287.3304 27560.2301 30268.857 6482.8087 12948.626 34463.3011 8231.4003 18739.3071 21841.4304 13749.5462 639747.5165 22453.5267 80646.1439 22203.6465 13740.969 13740.969 41394.7518 36360.6436 21464.3016 29103.0065 33829.94 25014.3042 13283.127 16178.6997 40051.271 24816.7444 51140.6717 31164.7503 35303.7707 14026.9474 16133.8818 16170.4623 15004.8766 38935.8931 170742169 ara Carbon Cycling Carbon degradation Hemicellulose Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 91865.8801 20901.902 152918.1199 64275.3134 89482.1741 24551.6245 107227.9463 102213.6913 63894.0615 50836.449 59394.4646 39012.5652 817643.8989 61481.844 57366.1219 200158.6372 73680.455 73680.455 36205.555 75897.4444 47471.1051 292215.6481 61554.3682 58895.3068 150108.1 39234.5944 67905.7521 134416.4601 106005.9615 39703.0146 77051.6871 102352.659 61806.7179 74987.3817 25476.8502 41043.8175 111222714 cdh Carbon Cycling Carbon degradation Terpenes Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1171605.7289 9878.6909 29932.2612 19652.2728 11754.5858 16541.1817 16915.7739 13512.8892 510667.591 22943.0835 383449.6045 25531.779 30120.2901 25569.6016 55382.9788 55382.9788 12145.7912 29797.8933 17230.3265 30691.9391 24369.3434 23072.0978 75633.1543 13494.4327 20415.1833 43896.6341 53751.1946 37241.2979 48408.9247 129484.0973 33202.597 33846.9698 16174.6046 37935.9086 379003708 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 5607.5118 135374.9737 5898.803 5543.6086 11132.1497 13060.5056 4847.8397 2139.5109 5824.5352 7878.6996 6145.0632 77869.9197 7913.7291 3875.9441 8604.581 8604.581 3593.279 22613.3021 5923.8409 8278.8459 4878.7421 3020.6677 8982.1241 10025.7175 9077.9491 15762.4524 6497.9274 11746.6401 3605.0406 14467.1132 4251.9858 4707.1013 5313.9161 87300826 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5692.2693 23033.5555 9899.3532 8096.604 7480.9457 9567.5559 5012.8036 8441.5807 25444.0196 4118.7419 4118.7419 133857.7327 6905.7874 6604.1272 5661.9681 3516.2752 9819.7306 8313.1981 10437.3588 6095.257 11492.9168 2768.7661 3497.1454 8278.2856 4403.9251 8025.4952 295674029 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Paracoccidioides brasiliensis Pb01 NA 6657.6745 5502.1184 5356.4974 8675.2575 4866.084 5176.8487 4713.9683 6932.8826 7597.518 51686.6316 77124.4601 8098.6396 5364.91 4432.9084 8131.1267 8131.1267 3547.4028 6505.8757 3350.6221 5067.5227 6733.1768 5402.1212 4122.888 7437.192 5990.8455 3169.3683 14056.9573 3743.33 5994.0735 3384.88 5586.3058 5514.3253 2893.0438 8532.7437 374375597 heparinase Carbon Cycling Carbon degradation Heparin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 27907.6859 3750388.0973 1068884.1828 3125.5681 4313.4414 3585.0895 15736.9891 1214204.4701 86606272 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 17722.382 16045.4061 5530.6464 14249.6161 17104.6764 5643.0144 6522.3984 9663.8105 3887.7471 13931.932 20579.7874 7990.761 274779.7398 12453.5669 12552.1341 15566.755 8971.2671 8971.2671 12279.6313 18509.2101 14292.042 10958.4707 18468.0352 13634.7483 4665.5989 6936.8002 20876.5279 5042.4613 30436.8715 14353.4852 15991.4542 6331.8679 10053.6757 11181.603 6226.9809 13367.252 239923937 pchcf Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 44039.9995 27396.7375 38888.3706 5103.9154 14495.2805 27536.383 10207.4935 17330.3025 31307.1515 26488.5321 854216.7983 49731.1854 18614.2879 92555.4495 23358.4439 23358.4439 10077.3735 56233.0863 22326.4366 109037.9007 40246.6727 111382.0071 16778.322 16399.1501 25698.7599 18621.9343 58423.9706 28559.3203 49492.9232 14386.9621 23913.0668 45391.8672 14611.3092 31572.4016 148514534 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6150.68 3004.0879 4489.6821 4362.7001 87978.067 5266.2002 8813.1677 6749.9751 5797.5514 11928.7669 6285.1506 2404.3122 3429.5214 7496.8499 2621.3252 12679.8288 6311.5465 7681.0284 2237.7132 4986.3544 9386.8675 2279.2716 12577.1465 303294388 nhh Organic Remediation Aromatics Nitoaromatics Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 5636.773 5453.1969 2751.3253 2867.3654 3571.2105 4832.4456 104212.094 5588.7193 7774.2768 7815.2524 6368.4745 6720.9456 3076.9822 3110.1352 8364.403 4771.5119 12053.0464 5466.9925 8036.3302 4217.7301 3117.0402 3915.577 5526.8693 10178.787 330964384 catechol Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. actinidiae str. M302091 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 4867.2699 2100.5306 148654650 MMCE Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9580.1236 6838.2553 8664.8327 9667.343 27624.401 12774.3174 17029.9709 10962.1657 12331.2085 8643.4115 160294.3251 11934.7306 19641.6561 17957.8126 10228.101 10228.101 6801.66 19398.937 10641.0639 14037.8456 10923.5479 8140.6668 51975.0534 5847.7878 11975.1352 5323.3069 53922.0724 16576.0785 16373.4672 4269.3788 11351.6092 24840.335 12681.4936 9882.134 238760545 terc Metal Homeostasis Tellurium Detoxification Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 10604.6385 35288.4046 18854.0022 13947.5233 2744.288 2721.7185 6276.9823 17791.0268 4296.0343 37876.3944 3993.5998 3993.5998 4778.5887 4600.7193 7182.0078 2696.6862 5661.0827 7839.9612 10265.6426 10889.7147 5022.8496 9961.3566 4592.8678 7538.9324 9113.226 10273.147 308226090 amyA Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 20681.7983 26762.4028 31059.855 39450.6404 29353.2946 17424.5716 16230.609 12378.1499 22179.9434 19870.4716 13465.8606 553639.4154 50231.7431 32048.839 32542.4085 23140.0045 23140.0045 15150.2504 30841.5311 26778.847 29353.204 28028.6654 21269.7905 11527.5831 15979.3817 37595.8411 16919.2235 45224.0315 35950.2864 35792.6739 11730.7264 15757.6733 15591.6255 11543.9844 26503.2339 196229564 alginase Carbon Cycling Carbon degradation Alginate Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 13182.9345 22444.9651 5799.7394 44714.3776 6175.0971 8407.9538 20008.7868 12532.6849 16206.1298 195380.0593 11237.0764 19404.5426 15172.7113 15550.9727 15550.9727 11044.0778 32352.5395 19830.0885 20187.7424 66144.3612 15870.5103 78099.0914 15578.2593 27020.2119 10950.822 34874.4435 18345.0789 27180.6825 9002.4251 21327.3623 16503.7495 9660.8707 19461.1928 110632316 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11167.8978 10375.7182 12887.9192 4419.4726 10677.2987 14254.6358 86642.8024 12772.1898 5300.1032 3602.1121 3602.1121 2629.6269 18855.2622 9736.2282 7557.8655 5461.3931 4073.2618 5248.9483 8335.4697 10561.1318 3592.6611 19717.0095 12197.9477 10942.6918 3322.4359 7615.8513 13686.9737 4679.6397 102740.1781 319652870 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12791.7618 8717.6491 6395.3624 11249.8777 11076.3027 8567.6407 10899.7678 21447.8358 6704.1348 152591.7558 10380.6771 30205.324 14744.9168 8624.3277 8624.3277 5465.2737 21843.5002 17548.733 25897.7289 9467.2512 21909.7771 5509.3833 5645.9645 14845.0588 8347.1796 31438.4683 26037.3741 14106.8041 6840.4044 8221.0257 9076.2262 6925.8501 15414.6408 325979780 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 49410.9417 8065.2853 17527.6372 23285.8929 15364.7241 3731.0285 16090.3332 6108.6425 5998.6744 30178.0254 42198.1961 42198.1961 2842.4489 18799.9518 5650.9669 11552.9653 8064.6493 7412.4059 2763.7816 13205.1299 3412.7291 21858.427 13046.632 19556.4187 3537.3732 10411.0591 6396.8082 3318.5585 119116142 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 18089.078 19485.5589 7288.6401 7439.5529 10045.0313 7726.2033 5003.1539 10126.4279 11005.6656 9731.4126 224923.7391 15391.4359 12567.8789 14626.0798 9264.4057 9264.4057 8199.0829 18256.5745 9755.8539 11972.8248 14910.0426 11772.3211 5575.722 11088.5142 18032.3384 6381.8441 25977.0758 6698.6711 26281.3906 6782.9726 14157.9405 11131.1148 10387.7723 20532.673 317465865 arsc Metal Homeostasis Arsenic Detoxification Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 18597.315 4676.7871 3619.1735 5429.5817 11153.7437 7330.5595 7772.816 21145.5013 21145.5013 9886.5511 6341.2159 9430.7365 2859.9165 7417.319 41685.661 2734.1344 2526.2885 359404117 amyA Carbon Cycling Carbon degradation Starch Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 24747.7752 10438.7596 606306.243 11908.3427 5482.7014 22042.8833 7941.6846 7876.8429 8517.917 22014.2011 16236.7258 317865.0641 14432.65 14106.5009 9770.9807 7070.0348 7070.0348 14009.6791 16551.9068 11753.9064 39642.8592 13493.3779 43969.99 6596.2856 8138.5226 13888.9038 26952.0935 98541.6243 38900.2012 54280.0379 6139.1068 20820.7278 8035.045 22778.538 41444.3963 324099244 terc Metal Homeostasis Tellurium Detoxification Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5133.9765 153330.6035 5729.7755 14706.7773 5371.3008 4632.6356 3209.0143 3357.0645 6558.8791 3581.3683 79833.629 8711.352 6524.0022 9852.8209 5355.6364 5355.6364 4361.1732 7478.389 2933.8257 37463.1785 12022.1404 9029.3072 8604.9605 5607.2677 7692.2676 4024.8697 12316.4382 6754.8347 7658.9826 2323.9958 22131.9186 4369.412 2508.2951 9299.7442 217504448 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 30878.4737 233926.1159 17050.0756 40659.5585 100348.2812 5230.9317 19898.6658 8364.9129 22104.6965 60821.1193 17607.6201 477779.1699 26784.7942 28320.9456 27546.8987 31417.9548 31417.9548 12251.2832 44465.7276 47494.8487 47667.654 88776.0321 13821.6292 18625.8583 22311.8364 35919.2821 30260.1563 51888.5317 27803.1802 64917.0296 11693.3693 21267.2301 26773.2466 40728.8365 187000.4908 377541972 gdh Nitrogen Ammonification NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 6182.3838 17586.7022 7231.0886 8858.3938 6501.582 5842.1055 9936.4521 7848.7737 96483.8595 13939.9891 9812.8314 3776.7842 3776.7842 6961.8142 9902.8932 5846.0869 6138.8998 5234.1431 27772.1643 5938.4058 8119.1215 34792.4529 82870.3927 20235.0385 18404.0139 4997.1543 7036.6471 5500.2113 8641.223 10518.7629 317474442 amyA Carbon Cycling Carbon degradation Starch Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 8377.7556 5573.5447 2391.8492 3059.001 3632.5309 13221.5766 2614.0077 87918.7068 5320.902 5818.4844 3923.0633 8909.0323 7202.2076 5256.2782 7155.1288 5335.9667 2514.222 2947.1124 8791.4709 2741.7076 12762.1755 6209.3204 8408.1003 2709.4705 4047.6213 5102.3183 3542.5873 9767.4487 146188562 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32549.0255 13578.6785 14416.3984 6422.8527 7059.1975 4009.7219 7409.5717 4979.8026 13171.9596 30857.0901 4814.4754 216038.9128 15619.0951 8586.6691 4157.1682 4427.3233 4427.3233 8273.2422 24631.6398 14124.6198 15676.999 19467.7446 10637.6101 6374.1828 7866.441 14421.3362 6707.4687 25286.8168 11108.989 25065.5979 6151.8221 8335.732 9694.5794 11969.8418 18809.2203 163857951 nasa Nitrogen Assimilatory N reduction NA Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 5877.2819 3550.4272 6181.3563 2908.1407 4752.9199 6742.9762 4903.9333 56139.3028 6321.1991 5740.8595 10199.4242 4080.9508 5469.2595 19952.4517 8545.0112 2191.2063 3119.1255 9205.563 4331.1256 12013.4474 7072.2245 8132.7008 4491.9308 4568.8156 7178.4589 5415.8763 7373.5799 383108277 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 6987.3048 5566.6415 2304.1931 5688.6001 3553.269 4494.3095 17101.9703 5009.0993 6182.2514 5843.4561 2370.1148 2370.1148 3218.9946 8700.9335 9271.315 11857.4352 6941.6425 9030.6543 2662.7279 2932.451 7759.1032 2583.8305 11980.7135 5983.9141 8293.7097 3453.3066 6145.3124 6098.8835 6751.5472 4440.916 332372299 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11646.1927 16351.2921 6662.034 26767.1604 9530.2562 15374.3472 12284.9374 15672.0215 16070.1417 146100.0682 29849.9106 16452.3214 37141.8407 8438.8686 8438.8686 13640.2011 25347.1511 20770.8473 42242.3717 13514.525 51335.1867 12165.074 30133.1121 15127.3676 15134.9365 72832.6685 11300.417 17930.7937 10867.2851 12356.3394 11597.6752 9566.3216 1835626.2783 118424472 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18724.308 17980.2012 21441.8875 25800.7503 18272.5656 27644.849 12706.3428 12999.7955 15850.3079 26106.8831 9743.7681 438861.8085 24500.7556 37644.0157 15261.6261 10639.9425 10639.9425 12081.1964 26813.589 23651.5104 54278.5208 21641.4151 19629.616 10333.4171 6386.911 18179.6087 9034.2641 32263.1759 16719.0436 23408.657 8620.6266 17144.3879 12256.3925 7392.8492 28041.467 26514830 xylanase Carbon Cycling Carbon degradation Hemicellulose Trichoderma sp. SY superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 4505.9276 5794.1271 2014.9362 3374.0535 4394.0475 51942.3892 5692.0315 3785.4838 5581.5577 19840.0946 4788.5456 4929.3827 7243.419 5094.3002 2450.5658 11091.0621 5260.9568 6509.6563 3546.8865 4351.1422 18431.1253 3529.4902 6943.3548 349789474 arylest Organic Remediation Aromatics Other aromatics Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 11711.445 29907.8828 6550.4555 2744.609 5105.7151 70856.2642 5978.186 4519.4729 3737.6942 3737.6942 3279.1838 10980.9757 4577.9635 2330.2849 6847.0763 8993.3034 5379.2395 8841.8997 3716.3653 5476.1489 3904.7609 7690.0565 63029734 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10842.808 8010.128 14880.1181 15261.0164 6951.6307 5032.6815 6059.1299 3558.2898 15737.6244 21242.8926 6250.2146 194343.3771 11186.175 11476.5063 7727.8588 6172.4139 6172.4139 8382.6831 29127.7406 11528.5075 9559.7358 12549.8239 15183.9877 5791.4471 8990.6883 24739.345 4256.2316 29545.8093 10134.8345 15841.7112 5408.2107 8747.2652 10893.0091 5433.119 19560.966 294476427 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 104720.0192 51017.3844 43179.3765 48888.0025 6291.5928 22899.1916 98372.2213 51566.6069 65964.4967 57883.0221 78559.048 312450.3242 21283.5166 51978.1551 92489.6898 145631.0264 145631.0264 19771.6851 89412.0101 28669.3358 279496.9652 84784.0153 40095.5846 70086.2422 32118.7809 62726.3146 44922.8806 124997.7041 72068.2289 54071.0443 86168.119 45292.7423 52592.0035 28691.2148 51334.6158 359253598 PRK Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 288939.872 14727.0581 47983.8961 39512.9063 181284.5214 66725.5231 79647.7143 54506.519 23156.7888 31160.9484 43075.685 59525.804 1890051.01 194030.4189 78526.7521 135288.4061 89004.8755 89004.8755 23315.9741 67025.3487 78502.516 70634.4661 89460.3725 61282.9712 41661.3865 46746.4478 149150.9192 198801.8744 118322.6244 70482.6005 91241.8201 26448.0565 53845.5009 62352.1387 44881.5894 67793.9268 170655245 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 4942.047 5110.0573 15002.6556 14040.6015 2709.9296 3576.5748 5413.8612 4643.605 104262.3423 6868.8985 5615.1761 25870.3603 3829.6787 3829.6787 3622.5527 13591.5081 7497.9662 11657.9437 9105.8154 9816.2839 3066.2772 6479.9575 16626.7345 7867.8901 11334.2754 11959.7421 15459.5166 4594.5825 10855.1081 3296.3609 4096.4384 6536.435 1256708 hcab Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16835.7972 8261.6409 21974.3951 13159.5909 10100.5037 22894.2525 10897.0388 5701.591 10648.1348 11886.6127 7784.6199 203595.5037 11606.7696 9383.595 9404.4216 5551.708 5551.708 32246.2692 21401.8193 11060.7636 24256.9147 11491.2335 16096.0036 5167.2212 7084.6596 18253.039 8770.348 24308.2001 13524.2188 15290.4219 5815.8481 13192.0289 11614.1836 4198.3507 19288.5654 237784869 cutinase Carbon Cycling Carbon degradation Cutin Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 6579.1588 6608.4834 15784.4786 2339.0155 10419.1209 3226.5361 16126.8034 6090.3614 17783.4991 5053.2194 5201.514 5002.6832 10995.6094 7195.4002 6879.2431 9021.0355 7643.6437 3542.5833 3430.2341 4906.6253 4595.999 18876.854 4919.7839 9257.1358 3193.8869 4254.7269 5014.0297 2592.2121 8501.1944 294675571 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 5103.0348 6668.9435 5161.964 4346.3742 5091.8066 4095.5903 85732.8369 3785.9785 3944.7935 4017.957 18880.1571 18880.1571 5145.9536 6158.7372 4732.5669 5222.3106 7420.4643 2702.4711 3750.2722 7252.1908 5667.3695 4791.3315 6588.4391 2598.0102 6389.3835 3714.4903 3189.9256 116208710 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 16843.96 9088.2369 43562.0217 8632.4663 7764.049 27665.3005 23338.0208 16234.8127 170836.8628 13653.9978 41321.6119 29835.169 64340.6931 64340.6931 8495.7671 50605.2936 12003.6542 26408.287 25597.7718 9701.5935 30584.6512 26790.2342 14947.3863 11183.7181 65820.3552 35698.0472 24466.3786 11237.3648 15328.6027 9550.4921 13983.2048 18061.8344 269791858 chitinase Carbon Cycling Carbon degradation Chitin Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 4294.4384 10584.9357 21970.6771 9503.1278 9966.5137 2600.1846 4974.4569 62512278 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6063.8406 9870.1312 3972.3328 23307.2909 11976.835 4769.2915 111502.6495 3616.6652 11267.7972 6083.1694 6083.1694 2817.3622 12075.6935 28461.6531 4149.8746 3522.1027 3653.9639 6618.4745 24272.3885 5311.2103 2092.8666 5056.2009 4686.895 5720.7513 375109627 terc Metal Homeostasis Tellurium Detoxification Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 5692.0873 5438.0723 6508.8015 2116.3732 4649.1803 2475.3858 5475.5552 5859.6663 41553.5451 175062.4214 16376.0754 9691.4163 11009.086 5313.5951 5313.5951 7167.9099 13855.1577 8431.3273 7491.8649 8698.9589 7303.6194 3760.9122 4790.5715 12406.7191 5315.8739 15607.453 14511.1354 11551.0925 3995.1767 7147.766 7287.0877 4336.8303 13374.2849 40745190 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 15908.4775 9233.6811 16572.8535 4999.2145 15391.8572 8732.5772 9765.0669 17206.8889 63844.7907 175527.23 20031.1651 28267.8085 4919.0338 6817.628 6817.628 12147.0416 25589.6725 14215.2406 27421.5609 16996.5345 17218.7302 9640.9887 7212 17055.5901 19011.7727 31658.2843 20504.2711 20869.4736 7670.3281 79398.5717 12953.7557 7661.4954 22788.4638 5830487 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5747.7764 18217.8578 8194.0366 8162.3806 13561.6227 6620.2782 3338.7587 4530.7279 3435.6749 100318.3853 3797.7716 5075.3228 2782.3034 2782.3034 3151.6174 6138.7814 4771.0786 6998.4524 3781.025 2892.0556 13382.8932 4516.6687 16105.0949 7065.4414 13387.7757 4604.9825 14854.5359 4630.4242 4680.8388 12206.8253 151280243 urec Nitrogen Ammonification NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 272265.5551 23908.0302 323182.0182 216998.9798 138162.627 79254.2809 130443.2989 127952.3277 300542.2767 93319.8288 216538.5264 110663.8249 3557797.477 118976.0218 172212.0894 251500.3464 172374.7072 172374.7072 69649.3207 185574.7528 92534.3662 234174.3735 191217.0921 894192.5053 109463.3848 93410.7836 117235.9937 93080.4636 316877.978 213295.3559 132643.7672 239546.9339 90225.392 138555.2779 74352.5801 496431.4542 377561084 catechol Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 112299.786 12316.4986 271811.7463 37241.7335 54052.4395 17024.1234 47496.0694 113985.63 42225.6729 171989.4237 135096.9584 73658.9956 2874282.6441 194873.3632 151580.0677 133800.9823 109462.2066 109462.2066 102538.588 199587.8441 109915.9744 78640.7045 345679.4685 93071.5261 144065.5785 138627.9276 110025.6837 162214.074 436700.6102 185528.6525 115702.5109 78473.6586 98227.2448 135601.7769 97690.7534 127086.3443 56695454 mer Metal Homeostasis Mercury Detoxification Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 301954.34 57950.2855 142435.5556 228256.0693 40513.9527 10372.6455 102472.8889 93809.6613 56772.4804 108610.5511 192123.5268 114697.7575 4133161.698 215144.3668 198690.4027 209553.3706 152166.9301 152166.9301 82704.7406 282248.3876 85135.6607 151764.1564 175527.9091 359123.1496 82980.4661 82032.55 113859.5203 83897.5382 241136.2824 122787.0498 286617.1719 54232.0577 109275.0306 161580.8557 72799.9051 283491.5321 328929550 arsc Metal Homeostasis Arsenic Detoxification Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 6411.3506 15387.8254 16002.0854 5486.1356 4904.7041 43132.4816 5650.7549 4774.9606 4939.4218 193415.6087 6698.4515 9316.6028 16121.1118 10409.7855 10409.7855 6644.3293 11057.9478 6540.7577 10815.3796 5752.6091 4927.2318 6099.7687 17146.8075 28713.7825 18957.1863 32988.4023 11381.1195 10671.4771 11415.941 7219.2251 4638.504 5846.7195 386378547 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 7028.5885 6953.971 115152.8007 10124.586 9895.2193 181252.0377 6692.6212 10775.9904 12388.6479 4881.8306 233325.1684 11401.8566 10929.4824 11157.3572 8821.179 8821.179 7130.9443 17472.1061 11249.3934 13543.6885 15561.0316 11601.105 6237.7571 11033.3918 9873.2717 5726.0239 24542.9592 9863.9062 13544.6062 9335.9138 8702.3158 5688.8922 7875.0638 18122.7846 110006576 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 13562.6845 12009.0252 11665.1009 35331.8623 7973.9778 13244.4468 8314.1541 4608.9591 9320.5635 18571.8811 6445.0823 179307.6594 24029.4811 13076.1606 11880.6751 10610.1746 10610.1746 7258.7929 22084.4272 19473.3557 13029.6617 13232.101 23912.2037 5670.4609 11290.7763 11381.7299 10466.687 28780.1912 8632.3508 17788.3093 10203.6017 7505.0927 14402.1289 24850.7866 14056.3966 328948206 amyA Carbon Cycling Carbon degradation Starch Treponema succinifaciens DSM 2489 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 4271.1139 10868.6598 4919.9558 25290.4817 4079.3688 4079.3688 8297.09 4093.35 2408.3511 2380.6352 7292.2028 3642.4136 8771.9074 82791409 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4329.1579 6504.9466 3284.6066 3412.8069 3429.7993 4578.3023 7914.4191 246154.3177 5033.9977 3967.7745 5037.9276 3724.3985 3724.3985 4159.7742 10984.6327 9012.8394 9881.8229 6664.2023 3525.5742 4882.8366 8746.8738 8836.2174 11403.7325 7620.3564 9425.4306 4291.1949 4127.8379 4613.7709 2979.9581 877683.7361 2385380 sqr Sulfur Sulfide Oxidation NA Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 8597.8793 115700.268 8998.6403 5531.8548 6230.266 103430.5647 6077.4582 6077.4582 13613.4051 7663.9922 6662.4028 4995.6865 9392.2291 7289.5158 3747.3034 7781.5718 13370.2877 11300.9562 7574.3758 3262.2255 3516.7847 10711.5367 6701.0981 300503010 nirk Nitrogen Denitrification NA Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 46774.7087 6698.2938 5593.3199 32124.0696 2525.6824 2979.7519 3831.8696 3347.5336 3347.5336 8545.0717 12039.7875 3404.5657 11660.4977 7555.4907 6552.4571 2585.5959 3800.5525 3393.454 2825.637 5646.0127 5907.1195 12235.8735 343095161 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 41049.2283 46740.0178 63307.4767 14694.1228 8861.69 10413.8267 20985.9024 10463.1177 25229.8769 43005.0229 39912.6065 621820.3715 51923.2641 35494.35 57784.3036 32796.7193 32796.7193 31852.9713 100751.1058 17259.5392 44551.8862 39828.2725 37324.0336 30933.8596 21601.6723 52437.5356 24096.0333 62896.4172 26942.3993 54102.9396 11282.9905 37149.7715 36650.9718 20660.3726 24609.4833 85775236 terc Metal Homeostasis Tellurium Detoxification Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 11364.538 114109.5385 5121.5869 119625.0244 12314.7455 12164.557 8765.0107 10740.9537 5037.9067 231201.8938 11726.9302 8303.9892 9253.4927 4393.7489 4393.7489 4330.1961 15304.1148 4979.4148 10351.6256 25470.7604 11586.4391 17153.4513 3832.2769 8800.437 14090.5534 26714.8523 63957.2211 17142.774 37129.2133 14765.1895 53887.6311 18504.7292 7453.6681 288911619 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 12523.8109 10357.4692 137690.9202 18632.935 45461.3952 3591.0273 4155.0449 7452.7948 5763.5705 8143.0047 8143.0047 3683.432 9069.1444 5777.9283 4690.152 7130.2256 10383.1898 10132.8039 4353.8813 13175.1272 5999.5999 16363.2332 2971.568 50723.4015 15451.3513 2716.1283 358449275 xylg Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 5616.3101 6598.2624 13086.3084 6168.2271 4408.1685 5610.6012 3144.4198 6154.3729 6604.9746 3905.6547 150960.5321 12298.0777 7691.442 14935.8891 10283.282 10283.282 3770.4332 10725.0241 8452.197 11715.3359 7166.7709 2539.9101 6513.9634 11994.6111 3697.9456 16243.3751 7969.9476 9480.5775 5055.9054 6314.595 8457.5413 3562.7478 7836.6733 111145990 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4344.2209 3923.9891 4781.2322 5981.002 2289.2603 4154.0266 2897.7315 376372764 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 47531.2326 16392.7467 37354.5465 80646.6681 91141.439 16556.7047 36436.7225 37361.1734 28896.8349 33941.8449 48119.6444 43956.8294 988183.1621 134777.4091 45854.4436 59686.3899 47828.3641 47828.3641 62840.2141 71516.3067 45498.5642 53459.89 69852.9512 65404.9884 26832.0607 38839.4253 103171.5853 24791.8688 134086.1672 81258.346 70897.07 30933.6476 78643.8733 48013.8991 32783.3909 113183.2998 296255906 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 50953.8646 50439.8909 11494.9237 28403.514 7057.091 13808.1872 80058.0634 10181.8019 12944.8236 49496.2454 42610.5576 311355.1581 29305.7653 36021.3835 61791.6742 30287.8064 30287.8064 16085.7433 50555.7177 24291.7813 62923.2819 23918.2275 32795.8938 15420.5782 18511.2322 283801.1624 42268.9738 127377.8558 76707.2454 32141.6551 26096.253 27506.8636 16123.969 302306.74 22496.2977 237880003 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 15643.9773 20501.9296 5859.5122 5525.7613 8187.654 4422.9717 4288.0752 157142.1627 4463.6645 5741.8274 9602.725 5003.7347 5003.7347 9010.3268 32713.719 3828.2877 9538.468 4206.9757 4759.418 14993.6415 12181.5902 11296.665 5189.8159 16295.8752 3707.2742 3456.3288 6164.9146 2469.5875 340528562 endoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 6316.639 4028.7712 4905.1554 3908.9731 5594.1509 3834.4866 197330419 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7832.5485 125058.7596 4241.2247 7693.7622 15000.3343 2546.5491 4833.0196 4643.5416 4085.3129 3651.6927 62764.0589 5123.3349 11926.7352 7217.6836 4768.7532 4768.7532 11863.4149 5246.5771 4241.9908 4475.5804 8090.1341 8446.3973 3266.7699 10150.6556 5215.2458 9122.3576 9028.5426 7894.6971 3710.6467 11461.2925 17319.7666 5121.1461 6254.5556 387591443 urec Nitrogen Ammonification NA Bacillus methanolicus MGA3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 3829.6215 7080.0428 10180.6469 65713.729 3997.7579 6713.7733 2045.9556 2045.9556 6897.416 6075.1895 3941.2896 5680.8333 4885.5016 4051.4848 7676.2397 2029.6692 22593.8183 8948.2539 4828.534 4906.3506 7179.8315 4520.6621 55978109 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6308.7494 8124.9799 11642.2606 3572.2936 4958.248 8012.6146 5797.7074 4738.3316 4996.0736 74079.8674 7148.211 5114.1168 5366.9903 6053.3527 6053.3527 4093.4553 11180.0171 14502.4656 5223.9858 5291.8972 13114.422 3893.0793 2955.4821 13496.07 5772.4162 15286.3566 11054.7876 8717.9746 3630.9326 5941.0889 5374.9227 31515.6394 203435.8755 190010931 ppk Phosphorus Polyphosphate synthesis NA Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 23852.5392 15179.8923 23864.4901 4579.6515 57204.3 53264.2613 6878.6977 15486.015 18848.7273 18562.9882 253933.8286 25755.0323 14066.7605 10836.6679 12370.4391 12370.4391 10999.1748 50902.3364 8905.9168 18789.1591 30670.1865 5049.693 9387.5425 13978.7497 31994.2172 30923.9076 30025.3673 12605.7788 25294.8417 10996.591 19215.6544 20893.0039 7878.089 16937.8657 145047392 soxY Sulfur Sulfur Oxidation NA Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 3985.5974 3378.7022 4567.7385 2952.7946 56776.3998 3776.9924 2857.727 6968.0305 2362.3088 7137.3105 2917.3594 8661.561 5315.2126 2927.0857 10782.8854 27352383 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 26618.7475 16278.4125 8284.9073 6341.277 7938.317 2559.7045 9374.9516 4625.6516 7988.347 10507.516 6509.9524 137263.4202 6881.011 6313.1838 3474.5801 3474.5801 14859.7378 32618.0748 10268.016 9389.002 9830.6899 13155.8668 8280.9136 4753.2127 10864.6275 5895.5212 19654.3725 8875.9405 11357.6978 10707.0438 14004.514 9134.2156 7166.8206 23007.5714 158279559 mg_chelatase Secondary metabolism Pigments Chlorophyll Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 14085.0987 21834.3994 23764.334 19359.7667 6605.2631 3160.448 7116.1197 5137.6431 6371.9297 33930.273 10008.6457 284579.9603 17504.1329 19515.3414 12608.5498 12397.5208 12397.5208 8413.141 11013.1573 8942.9756 9343.3858 9238.3782 10216.7703 4956.9726 6364.1519 18528.7512 21097.8203 24025.185 19884.3022 16881.4761 8500.9628 10870.2202 8143.2392 7676.7572 18467.0796 187924111 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 99186.6024 13363.6365 178166.0651 9682.9814 15145.439 8791.7489 38865.132 38656.1943 21474.8349 33557.9801 85469.7222 20673.4309 260399.7891 145401.927 30369.1631 107619.4519 33031.884 33031.884 25050.0472 42303.5702 17422.7468 27102.7237 116205.7446 18832.7431 27201.2381 40387.8698 32134.4124 60576.1759 190215.6596 44080.2723 47503.7914 39924.309 38946.3381 54707.662 34972.0939 46844.0257 32480579 gdh Nitrogen Ammonification NA Porphyra yezoensis superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Pyropia; 90124.5965 11870.5213 15519.1835 12026.0185 15115.0054 5127.0761 9283.932 6049.0186 6280.2825 10055.3516 5623.1737 77361.4426 7044.0584 12978.2635 7059.833 5686.2588 5686.2588 4450.4212 13058.318 9137.23 4316.1029 9466.6454 6290.02 3543.8961 4969.3821 11277.9149 41227.6459 16618.5372 11191.528 14807.0984 4596.7602 5246.0461 8355.6235 4397.9943 5601.6129 297630358 terc Metal Homeostasis Tellurium Detoxification Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 6942.2322 7301.6919 6497.478 5024.899 6032.2859 9212.8077 5636.5754 5837.7964 4533.6634 122374.1818 22013.3604 7286.2644 5578.4901 3868.8647 3868.8647 6207.6975 16492.9511 9356.5892 13299.2715 21646.4233 10179.0828 4679.742 6822.0179 11660.2311 4077.1468 14608.699 41363.6728 18031.9964 4891.0906 6656.8572 6544.0595 4748.5864 17390.1752 298232825 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 58702.104 237956.6386 73969.0243 8534.6668 111490.3276 8228.2333 34048.9688 61719.6377 7571.398 24898.712 43534.6338 39107.9763 640620.3939 85162.7582 23681.8349 34878.1054 33065.5831 33065.5831 13358.2885 66677.3533 26287.6265 33269.1483 54951.7019 104618.2161 40095.6527 19840.4944 45068.9875 23736.9581 97379.8796 33134.5973 32828.1844 22059.5706 23794.093 63505.9184 97401.6292 30023.6663 145604206 protease_serine_fungi Carbon Cycling Carbon degradation protein Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 18984.2282 12984.3804 26696.9406 14376.7038 8989.1317 22107.827 11767.8349 4501.6857 11857.7018 16336.4466 6230.6262 294174.7864 40035.2814 12265.2952 10132.8358 9649.5234 9649.5234 11903.3205 26745.0992 17577.9434 28277.9739 19902.1854 35723.87 10983.9631 10732.9596 23583.1874 11628.8785 53622.3183 16816.3096 19345.3163 10812.2988 13778.7089 14451.9892 9272.6989 24643.7821 55229573 tehb Metal Homeostasis Tellurium Detoxification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8132.0723 4777.5994 9024.3252 17290.0487 4602.8875 8896.958 4840.17 5571.1852 4157.125 107230.2585 59328.0184 6530.7389 5257.0498 7464.4088 7464.4088 2972.5062 13410.7075 11178.5345 5108.5842 8154.355 9966.6351 5848.9438 7086.0535 4579.6109 12878.2355 12300.1259 8300.1956 4769.1113 7904.2 6130.1826 6334.7343 6210.5713 363641365 xylanase Carbon Cycling Carbon degradation Hemicellulose Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 4832.8283 21305.3951 6752.7387 2353.9671 11353.692 14652.4295 5198.922 6416.1758 6416.1758 5285.6574 3436.888 5659.0353 5695.3006 4985.5458 5188.6609 7010.3311 2525.8316 4731.7665 6806.8009 5084.9697 359290840 one_ring_23diox Organic Remediation Aromatics Other aromatics Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 15120.0358 8160.8912 155989.9077 33460.1742 38178.7173 7458.8947 14003.549 22358.1954 26317.4085 245204.9313 17028.5452 17010.5527 11911.486 12496.9617 12496.9617 12809.5092 25107.6393 18107.734 236829.9776 21312.6331 17937.9994 11086.904 17790.3249 17472.3299 12375.2025 65435.7471 21391.3769 26658.6713 9857.2616 14205.4339 37689.4083 13289.9969 23542.4758 210611730 amyA Carbon Cycling Carbon degradation Starch Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 18083.6322 5138.6216 3760.2893 2854.1483 6939.5261 6253.0759 4532.2384 98148.5555 8383.2121 6686.9886 7478.4172 4949.9089 4949.9089 8161.5452 10221.2639 6621.4672 7555.7856 51508.6157 16273.8777 2241.3852 5256.6055 8358.6246 6395.4991 14937.2901 10490.7511 12097.9743 5201.5202 6210.8527 7062.5078 4657.6684 9476.4979 84778341 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18079.5561 5113.6692 16705.11 14722.1719 11497.4571 13521.3988 5554.485 12694.5232 21085.9892 7267.9484 263885.3178 11251.6552 11746.2685 9060.3214 10869.0244 10869.0244 7857.3782 16264.7491 15013.5449 43991.8394 15004.0901 14334.0544 9427.6514 6858.4195 18816.4755 6435.9204 25483.3368 15432.3122 20375.0064 7690.7867 8278.6806 9822.0716 8598.5523 19107.438 289185211 pula Carbon Cycling Carbon degradation Starch Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 5768.5714 6423.9664 34071.3675 19323.048 3039.1554 4415.4213 3906.1467 3186.845 147637.8409 6405.969 4869.9013 6815.2205 3877.2067 3877.2067 3220.4796 4441.4171 4006.8036 4836.9229 3968.3644 4766.6605 5920.0569 7723.3383 1742.3654 3066.3646 2681.4768 5647.0612 8305.2366 219719342 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 18980.5634 7177.1557 10901.049 5905.8645 18174.0732 6805.7757 9976.7661 18055.9223 7981.9272 172810.7132 12398.8563 55685.902 42523.0063 14066.7593 14066.7593 10026.6862 36230.8894 13722.8016 131781.2888 20228.0471 71555.558 45280.6052 7348.4021 35061.8399 71191.101 18972.6584 5294.2269 28925.6551 18770.9285 14210.276 11235.4653 14665.8793 30056.6829 225159869 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 15539.2583 10765.3578 357617.9879 15050.8138 19010.5823 8357.5194 3419.372 5150.5847 5201.4105 7480.0316 5833.4306 112857.6137 8516.8613 8113.4594 6500.1152 3163.8628 3163.8628 3790.1595 10019.2261 5245.7456 24570.6339 10554.4685 15848.5897 2538.1592 2879.6272 11500.132 11177.0473 16514.2798 11819.4332 24854.399 3862.8697 18757.4443 6204.9139 6830.1283 15785.8912 363993685 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus subsp. bolletii BD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 30242.3321 11077.5048 16226.977 25165.5863 4752.5439 14104.0671 16278.1981 13560.3517 15175.4294 17660.358 18004.6548 471054.3335 28325.9636 26501.0919 27901.6189 18632.4472 18632.4472 15223.5536 37415.1494 36904.4523 29125.4431 42129.6438 46510.9435 20011.1203 13556.9255 30914.4563 12468.8855 39671.8679 37357.1448 33130.382 9307.1422 23244.0803 21244.3744 15118.9215 32415.215 56680167 linc Organic Remediation Pesticides related compound NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 513728.8102 60453.3575 9533.7395 11473.2832 11755.7003 11011.7342 8506.157 23046.4733 23120.6407 147584.497 58188.8405 38312.8465 27891.4611 14399.9873 14399.9873 7845.823 20526.6996 21552.6518 13267.8205 30610.0732 4341.5832 30446.5679 15030.8255 15908.6493 10620.1832 28296.7796 19983.1327 109658.0192 20631.6597 34522.0417 36679.8548 17373.6268 19256.1585 334698018 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans BR-AD22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 32949.1213 19092.9467 14195.5429 13469.2129 5721.31 13050.9045 9880.4254 9244.9271 16187.4992 12686.752 7419.5358 194767.0844 17473.8816 15781.8558 7994.1702 6810.3069 6810.3069 8632.2028 18856.2257 16924.4713 11933.2486 19454.6775 16210.2594 7827.6335 7690.0127 24326.3024 9677.86 30291.3659 15434.4905 21748.72 7944.6744 9970.6875 11091.9132 8209.9196 18901.4836 50952845 mnp Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 66444.6986 6767.1667 19633.3217 12492.5081 4909.5733 3174.2261 28338.9151 29805.1829 7625.3003 22381.4671 21391.087 122054.0318 4796.0727 8830.7413 13258.9422 20632.8431 20632.8431 9184.4893 19229.3643 32069.1346 27243.4591 24314.1441 28757.6914 7603.3372 14264.7901 14354.2091 16212.8726 40269.8431 11314.1749 12559.5995 2738.0074 11238.9019 21256.6331 9177.7064 8487.5731 84694682 ppx Phosphorus Polyphosphate degradation NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 79197.8542 38273.0633 15892.4495 50832.8386 16131.1238 207663.675 31297.3626 13928.5661 38538.1552 40876.2439 52616.4325 2237168.9507 52801.7419 67526.716 62398.7682 49739.7945 49739.7945 37134.844 95879.5988 22186.8445 44163.4848 84571.9576 30819.9291 20602.789 23507.0832 31757.1172 39581.748 103202.5391 48537.4475 39161.7125 36607.2893 106400.469 84478.6218 35552.1344 40407.0956 164456112 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 208183.1214 70933.012 687913.1935 97751.5804 74176.8434 78486.5131 192483.217 195161.6535 53627.7854 157441.3424 254894.9141 184485.4991 3497409.6119 229128.6255 228823.5228 639410.9646 232377.7577 232377.7577 209521.1068 235400.5178 150350.4446 419277.5274 258088.4006 259985.1267 108662.5473 168087.3556 249211.9849 170364.8257 444051.3822 267373.6345 256334.8814 99735.6375 161678.3005 163271.6012 153594.1915 280730.7975 88814399 xyla Carbon Cycling Carbon degradation Hemicellulose marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 62368.6967 39243.2574 61958.5447 23909.7827 21217.2827 233915.0983 21483.0439 38418.9922 98854.1173 43392.7429 145050.9881 47419.0963 760643.2766 56818.1087 101752.1147 150141.3768 191339.3001 191339.3001 59496.8974 45628.9558 40883.5915 68052.1827 62581.3738 37469.0688 30006.6991 53555.8369 52841.5122 25660.929 100525.6635 41249.825 55118.0554 19466.0471 29537.1327 36364.7537 45250.0926 27149.3564 224566899 alginase Carbon Cycling Carbon degradation Alginate Streptomyces sp. M3(2009) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15256.7042 5072.1876 4535.0026 15088.0152 12263.261 19280.1324 8605.6298 4246.3879 3504.6165 16150.5406 4486.4202 145760.7272 7059.2087 10557.3847 28863.3358 10910.4183 10910.4183 3935.1784 8102.0658 3505.0188 6776.0474 4462.7788 3648.4855 4862.6001 12517.3676 6427.4168 14162.2278 7255.0933 12068.5254 5698.8889 11081.7185 5564.6954 4337.5325 298551209 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 15306.2721 12413.1616 13485.1235 6620.2554 12692.3917 5146.2547 8189.067 5107.8811 8165.3015 8645.9854 11090.4846 208153.6093 9083.8365 37409.8857 10788.9086 6872.6184 6872.6184 10982.9884 23601.8429 11892.4533 24421.924 12079.6866 12949.5182 5449.5517 12686.3454 17046.8681 7636.0894 20156.5247 31788.9478 38537.6366 3801.7136 25063.8295 11638.7847 5010.7539 14632.8968 126460004 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7420.5048 8053.8144 3544.5957 6011.4141 2937.4253 6030.053 5315.497 2617.1512 131370.6743 6341.2521 5920.0993 6524.6217 6381.6145 6381.6145 4781.3663 15580.4598 8091.5182 4719.5846 6712.8429 9606.1533 2859.7918 4428.6873 13726.9202 62038.1518 13576.6154 4299.2011 14036.6157 3992.2668 5195.6837 5448.1773 4703.1258 9144.0539 156523978 Sir Sulfur sulfite reduction NA Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 39169.8537 4916.9717 5944.6884 17271.5528 5146.3955 2035.3924 4376.1658 3948.6313 76572.3263 5105.1066 4658.17 1861.8308 1861.8308 2586.5231 15082.7865 5923.3464 6177.1985 4843.1658 6659.7251 2264.276 6156.6853 2186.5235 7742.5126 3903.1319 7731.0364 2756.7205 3561.2189 4761.7181 2622.0664 7344.1384 109632453 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11746.2857 13227.2538 8033.1484 17440.8337 7409.3938 12892.2612 8666.4564 3623.4937 10485.5548 3858.5455 139206.5099 8703.6636 9556.9041 13230.1769 6696.9132 6696.9132 6738.3112 11382.1111 7961.4847 12899.2861 9477.4802 13060.6502 2998.3697 6416.0625 12366.9973 5320.2752 24690.8541 17187.1791 9491.5678 3453.6746 10077.4762 45747.7891 6430.4131 5629.7632 154246839 merb Metal Homeostasis Mercury Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 223183.0525 41479.0585 249231.546 57325.8635 129794.2198 33658.9953 143493.1494 91316.5669 85818.0848 67245.1297 104207.1943 108611.5107 1479835.0143 92242.2129 172916.2875 190096.7648 247083.2462 247083.2462 57979.3086 156426.2841 100476.9714 311798.4127 192103.1156 112713.4493 130538.9829 67656.9386 98881.0201 57712.4101 317945.1768 276421.849 180987.4692 48968.2925 140330.2468 87428.4197 80690.0343 156731.7199 74038476 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18914.1664 16922.2481 37900.8189 23605.3628 43649.4173 14034.5852 14958.2288 9916.7401 13814.0655 24024.5385 9053.9954 323672.2233 20913.4135 16251.9027 11973.903 11028.6168 11028.6168 9070.2176 27722.6778 20573.6238 20425.1141 19738.0665 24154.9679 10796.1682 9681.0792 28155.1494 10558.4627 42316.2267 31891.1638 25840.3026 10579.5741 12174.7193 220762.3559 7875.2204 25777.9984 162072858 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7392.155 12330.6735 5931.5197 7024.6088 14120.4204 5434.6774 3401.2483 2825.6334 4916.5762 4439.5913 3778.8197 113921.8301 4751.5291 7289.665 7394.5201 3453.1499 3453.1499 3992.1547 10245.2965 8126.4548 6203.5888 7454.7127 4561.0437 2707.0858 3702.4518 9797.0661 2709.3821 37976.7078 7245.9271 10681.8505 6980.4111 5203.663 4817.3145 3943.1148 9028.4003 219847326 aoxb Metal Homeostasis Arsenic Detoxification Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 152071.0161 11449.0851 31106.7827 411123.5439 85115.2266 8519.3159 197711.9125 47829.7768 121801.7073 53725.0088 48183.2102 30787.9437 944884.7152 38413.6782 43060.5632 56711.8792 52697.8733 52697.8733 39540.2981 231292.4512 50455.9474 187658.8839 61464.5034 121219.6294 42894.7207 52075.6049 86133.963 68959.3528 149292.8911 59572.5663 69721.3235 39661.1246 56570.4698 223700.1235 32954.646 49313.4817 118165597 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10015.2868 6717.474 9238.8832 21979.3514 8055.783 16954.0539 7061.2535 7319.2086 32026.8546 31188.5624 241477.2646 52103.1148 40552.1587 45567.1376 17364.8008 17364.8008 8566.4711 16311.8563 11639.3393 8244.8325 21051.3391 15844.7716 8781.7063 11663.1375 21758.0873 11120.405 51732.5177 40256.3981 21422.5339 16796.9378 26067.3155 9480.1249 12675.7033 16530.5799 320007776 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 13412.8037 9605.1858 2941.919 200417.3101 7388.8033 3691.1186 2600.5674 2600.5674 9021.5252 4808.4754 5435.8641 4863.9416 2407.4749 3950.6839 3068.8764 13417.2227 44410.5125 8977.4313 3973.7945 5848.6699 3890.2779 319442111 cysJ Sulfur Reduction NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 7337.7531 20974.5528 21317.6049 4677.6705 2295.6326 22630.0016 5195.0717 30509.1095 118458.9449 8380.9359 8318.0593 7265.0829 3942.5121 3942.5121 6248.9761 44718.062 10016.6613 9826.5877 12808.6007 22712.4107 4191.1454 11629.1028 18869.9421 8997.1697 39176.2065 14178.3659 12970.7225 6040.9049 7244.4928 14612.8962 24111.8423 12266.7192 156740258 chitinase Carbon Cycling Carbon degradation Chitin Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 11714.9527 9494.835 3414.1897 6166.9808 2882.2562 5416.0039 3942.637 2388391.9503 6115.3139 5593.3422 2035.3294 2035.3294 13177.5716 10953.2954 7544.8864 5103.0464 8489.289 6867.5056 5454.578 6943.8531 8025.7382 2644.6456 11607.6249 4097.7268 12702.2281 10209.4394 13401.5143 10916.5516 6387.67 8852.9905 358385925 dehh109 Organic Remediation Chlorinated solvents NA Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 60966.2483 1747367.7679 28516.8377 8404.2283 50540.7496 36213.3076 28575.638 37572.2396 45390.6273 40422.6418 21814.4875 637549.0441 18919.3315 19489.8541 33861.4778 32000.7337 32000.7337 9591.7852 65592.4662 43367.5921 49572.3585 49835.9745 25219.1117 15401.1488 21921.5871 37846.3209 25736.1419 46896.6068 16978.6381 36184.4872 42654.1607 56732.2127 26367.4595 44716.1641 41321.1508 332699146 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 14514.1151 33269.7683 9837.6015 17257.1921 21054.8332 16141.4887 49708.8112 42677.9113 14029.7795 14320.3957 16731.4014 265153.2076 12533.3263 44019.0412 10005.6326 8332.9268 8332.9268 6668.9293 34196.8862 14426.8071 17873.3181 82839.957 44595.1004 8886.833 21139.5795 12646.7254 33733.7513 56206.7209 40394.7221 35522.8656 30579.8105 30968.1476 16606.3425 20442.9148 16312.2166 325672899 urec Nitrogen Ammonification NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 117222.2315 23858.6307 45528.0446 94845.0413 123033.7954 38381.3516 210216.8577 180930.4865 54946.9857 66316.0518 171455.7246 82062.9838 1653670.7639 199452.4571 238670.5134 219990.7274 105903.9762 105903.9762 76751.0225 188556.0708 76093.4298 110378.157 154193.85 91189.7531 179018.4459 80990.8762 115954.3842 88148.2332 285050.8312 158312.4094 148441.4954 131833.7734 83231.0669 117071.5182 63633.4358 310075.0153 220975035 Sir Sulfur sulfite reduction NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 7997.3329 233456.3161 2458.6792 3541.8212 2306.6119 17281.3308 6991.3202 3946.5392 3205.18 8730.4286 4810.8964 2496.4941 2496.4941 5414.691 11079.2113 6354.4131 6921.4489 9775.681 5418.7712 2867.2291 5299.4095 8227.2028 7882.0991 14704.6449 18751.402 8600.5064 3411.6529 7204.1897 4850.0511 4242.594 14605.8559 254487049 atzb Organic Remediation Herbicides related compound NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6303.2585 6372.6619 4380.578 7754.088 7004.1073 9274.2098 3771.1847 5152.6965 7764.0458 5448.2601 107081.5433 6532.4456 7247.275 4409.6632 3648.973 3648.973 6236.7636 13162.3439 8100.6672 7889.0098 77403.4056 9698.1864 3803.262 3357.8065 10436.7793 4198.8993 18228.083 6248.9613 11268.1572 7529.5633 7395.2385 7115.1499 4714.5227 9182.7654 56696200 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8331.7278 44469.4697 5131.173 22900.3524 15400.173 2996.4191 3861.7551 9387.2622 6383.8516 5083.858 252299.5432 10954.7155 7176.9064 23693.576 13210.0979 13210.0979 4330.8023 16164.8543 10760.6603 7253.5693 9033.4134 24590.5694 3396.6687 12223.0239 10125.5987 5247.5137 20014.2903 9022.0762 10817.3299 4390.2043 8649.386 6051.2013 6101.4684 8712.8582 4249601 urec Nitrogen Ammonification NA Actinomyces naeslundii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 7118.8241 5799.4917 5663.2003 13879.8312 3339.6538 3997.8279 5519.2001 5849.6897 102020.2965 6092.8932 9240.0412 2610.2459 2610.2459 4115.9769 10277.1071 5108.0669 3507.2687 4534.8937 5728.939 3913.0385 7183.0643 9569.0737 3934.322 11692.3905 5514.6523 8578.6244 3980.981 6759.1365 6993.1288 3424.3384 5703.0292 353189486 pcpb Organic Remediation Herbicides related compound NA Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4441.2373 47077.6653 8387.5931 6152.7426 4027.8557 11208.3539 4568.8138 3589.9099 27573.349 4904.4191 4593.4893 3655.167 2340.1762 68349021 nirs Nitrogen Denitrification NA Pseudomonas sp. C10-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 40287.7171 39479.1587 98691.7318 56221.2563 7293.0812 54576.7205 37125.3687 36807.7697 112567.3656 72298.3485 60401.6959 485240.0948 53889.0809 99875.7394 176201.7899 47799.2604 47799.2604 18940.8996 67604.9984 26222.9849 55658.7925 52011.6923 24511.0355 19648.1875 34106.1561 66508.2078 69631.0587 134156.1509 59996.52 44016.1577 62669.1021 30160.6193 88939.0446 42279.3822 52221.175 71283718 nifh Nitrogen Nitrogen fixation NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 5197.0339 71469.623 3592.1295 9505.4533 5953.5577 3757.0198 5216.2042 6963.1126 5319.9827 13593.5458 1896.7799 3850.9548 3902.2178 2371.1636 7018.0319 404387763 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Turicella otitidis ATCC 51513 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 93459.8614 12289.6113 8760.2805 34448.2602 130812.4094 20082.8296 25175.583 226570.2635 7297.6776 21160.2981 26168.7812 107899.4732 1295202.351 34310.6513 72149.3574 51948.6762 30925.2056 30925.2056 12488.6882 43567.0094 39890.6168 17030.2088 25814.5934 22349.6073 31215.2692 19819.4867 59285.8966 17364.9798 64017.5664 50843.9179 43205.0065 17615.2301 28526.2793 20263.8938 20166.2879 18348.8193 261857027 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 62574.757 33112.5315 18837.5035 10213.2892 18590.0338 9136.7277 5464.6839 10166.4978 19808.3938 16421.5779 2083159.821 31724.8845 16271.9602 13238.8196 15097.9496 15097.9496 9275.9013 127151.3467 28011.3907 24722.1706 30506.9415 198756.1143 6258.0453 11958.1575 25713.6017 21947.6552 48585.4264 18751.1361 30587.0511 80844.1335 15391.3421 17581.506 11150.6878 20022.6709 303276773 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 7016.8491 25316.1337 20984.7071 13187.0746 3214.56275 7400.46125 5463.84375 3951.2247 210945.7192 4051.6155 8375.54515 17016.1802 7907.9203 7907.9203 4411.00915 10241.7466 3955.1199 22799.82435 7773.2244 5284.56005 7746.0928 5342.7791 9892.9636 5172.8807 6889.5286 2441.07105 4008.9828 3238.8111 3870.3725 11000.6876 351731530 tktA Carbon Cycling Carbon fixation Calvin cycle Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 5687.9195 6467.8841 69338.3827 2527.9664 2527.9664 13441.5007 17694.5809 7789.4995 4442.2348 2404.8581 12213.1414 349687934 catb Organic Remediation Aromatics BTEX and related aromatics Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 19118.2957 5237.2381 10207.2213 10702.6708 9985.5252 13293.0681 4501.2722 8748.8599 9469.7428 4081.4183 218623.2259 8753.3625 11089.8078 4446.9163 4295.8532 4295.8532 3962.4686 14710.7254 12876.621 7157.7161 12193.5421 8377.9611 5481.4568 4964.6534 15994.8617 7547.76 222762.5303 11138.9195 12052.6318 6447.5257 8646.8279 6697.4515 7556.2112 20623.504 333390862 amyA Carbon Cycling Carbon degradation Starch Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 108429.4843 13795.2241 27865.9841 131132.7536 17865.1122 21094.2337 216113.9781 38332.1993 472853.1229 67693.2829 58969.8812 428519.9082 31491.9265 129156.9677 47754.1173 107595.5876 107595.5876 146201.9247 48916.6357 28498.7507 80323.7588 56847.5164 21113.7056 25342.1335 58561.3979 76533.024 71939.2794 71779.4937 76127.0456 48959.7429 27027.9321 76846.2829 34515.3037 52242.0049 43935.6888 88779000 xyla Carbon Cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 10400.5121 6153.5288 7155.7156 18125.6464 4304.5552 11593.5516 10069.3436 10349.0433 5888.4802 175147.9724 9167.227 8909.2382 6021.45 6042.2472 6042.2472 4984.7473 12886.6381 9076.34 7788.7498 8549.9705 6795.2214 3880.3199 4895.8914 9681.8776 3929.3125 4280.1876 6953.32 9792.9907 3792.8633 4836.4808 6270.9828 5588.0154 12556.156 283816451 chitinase Carbon Cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7391.6922 5817.8719 19156.2009 3946.491 5336.9782 3406.5088 4266.2116 7576.3697 2707.1207 104944.9889 7729.2398 5834.0981 6760.7113 6760.7113 4652.5047 9135.146 8621.1128 7322.9736 10182.536 5855.9765 3699.4669 4137.4106 8775.9732 4195.0687 15724.6459 7610.2268 9916.0834 4492.0136 4606.3426 9135.8192 4037.6807 11212.7766 219543221 ara Carbon Cycling Carbon degradation Hemicellulose Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 13710.8885 5053.1415 16282.0988 4320.7859 4986.2581 6156.8271 8289.8673 7779.9434 8720.9849 8923.0197 124876.3825 101896.6461 13561.7606 11948.5998 8903.5003 8903.5003 7774.5577 16176.2334 10443.68 12656.517 10732.4578 22435.6074 8197.7413 6263.1577 13705.7188 9314.0845 26907.5978 13429.8681 12747.185 6030.5107 12757.4729 10317.2016 3523.6133 11588.2896 338822056 cellobiase Carbon Cycling Carbon degradation Cellulose Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 16833.6426 10524.276 4025.8998 2455.4145 2527.8392 5552.6155 9523.1487 5306.986 58568.085 9010.5739 9021.0153 6277.8392 8698.5438 8698.5438 4574.3168 5383.495 3554.5615 4115.5997 5420.5604 2342.9507 23653.1005 4902.2958 13635.6547 25421.7318 19866.5849 297565732 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 11072.0367 5887.2741 11994.3392 5315.2265 2243.4688 6685.1315 15560.9116 9579.2038 97667.3652 7228.4712 8116.3108 21463.9626 15473.0938 15473.0938 3140.8012 16927.6733 11112.4844 7519.0699 11166.0312 14426.6231 3195.432 4066.4712 7229.4343 8957.917 18286.5801 7294.6003 7131.302 7372.4849 5341.8444 10874.2769 5422.5257 56463.5216 237880780 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinoplanes garbadinensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 17224.6468 6532.758 7527.7402 8332.3374 8086.6943 7501.2809 6919.6355 12245.7337 9165.4038 129957.7808 38330.1862 39572.9073 7372.8024 15245.8554 15245.8554 7763.2373 18516.0015 16973.0395 7476.1487 17136.3704 9291.7475 6983.0226 6282.1548 13567.1539 13934.9831 26994.6521 13395.7186 14341.2245 7341.6256 11400.2525 10360.1005 5717.6151 14082.7703 170781373 rgl Carbon Cycling Carbon degradation Pectin Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 14576.8304 16547.3481 17046.448 15511.3141 7432.2022 39910.4115 6547.1198 27750.879 7547.5334 125632.193 6840.0504 19419.9949 9482.6834 7050.3317 7050.3317 28266.9613 15469.6824 11126.7301 11158.4248 35057.5768 17844.4073 11811.1806 13898.3614 10018.2269 12943.8036 21209.417 19115.6617 19914.1037 5492.1497 9370.1262 27602.0086 10951.668 21498.8992 358459286 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9464.2943 9133.7271 5433.3828 5450.5523 9699.0814 9344.2118 13103.5774 74362.1823 120302.5229 133945.8827 6511.2875 4875.4686 5301.7485 5301.7485 10936.5257 18646.451 8637.1962 18388.5146 89345.6072 6465.6697 7023.7267 10868.1826 7092.4766 9289.4796 20285.6424 11889.0086 20022.4564 8138.9051 7948.5005 5667.3344 7558.6335 20191.6264 399230845 xyll Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4302.1025 8936.0213 3257.1469 2723.6404 3388.292 3283.5619 38043.3982 3008.0395 65090.7922 12616.8726 3201.0754 5943.7427 5009.6373 5009.6373 3260.0918 9960.7892 3965.2415 6317.2638 5769.6818 7062.5648 6845.3862 4301.349 18164.3924 6092.9262 5099.638 5032.9236 6915.3738 3974.2919 6187.7879 333919340 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 63085.2503 12538.6451 11458.0263 17310.0771 4726.3431 23858.4699 6122.7839 13824.6571 20161.0117 16401.4872 270233.1377 42474.7808 21802.8571 38542.9216 19619.8874 19619.8874 15846.9235 32893.3138 13142.5719 28360.4178 12649.7515 9255.2176 27118.0801 48121.8943 14722.8011 45377.9868 58690.0396 17990.3326 35932.6739 7018.1652 16099.9699 18827.2509 16580.9555 29051.722 373550803 linb Organic Remediation Pesticides related compound NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 40001.8462 20806.1153 75880.9996 60919.4466 7870.1432 25267.5816 188594.4845 33597.0048 33269.4686 47400.7355 59814.9174 665431.7963 47053.8758 35520.0222 59504.7561 18530.3274 18530.3274 30626.6849 44600.0567 31665.4973 35807.9913 36421.8629 18690.7423 36821.2368 23447.2418 44563.82 134392.6048 53837.9258 52710.0571 36013.0765 154207.557 30061.806 59496.0527 201504.4861 124671.9587 121705978 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5209.922 37099.0266 5214.4048 3218.1326 4520.0862 2890.155 95592.1545 5080.1758 2900.8295 2900.8295 5918.3813 12945.6262 7342.453 4937.1234 7512.3996 5458.5384 3692.6686 10962.4154 2590.231 20151.4608 9544.4921 7175.9415 2582.4543 4273.1948 19721.5287 2894.4039 116248770 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 158662.7223 14155.1536 208231.9892 710251.153 18202.808 15881.6907 67719.9738 62217.5479 29449.7057 76675.9569 42576.6369 73014.0997 546334.3781 59619.2681 47712.1811 95982.7066 117529.4422 117529.4422 37548.3887 56852.6266 80691.793 186564.775 308433.6521 154799.9221 158319.6576 73152.8375 52135.1957 42311.2701 120814.069 46109.1881 72508.4813 27996.7291 52186.2382 67625.9168 43374.3553 65373.7615 146283804 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 162060.7074 110300.6705 319169.0504 125295.5706 100500.0823 44894.7515 127603.751 256617.0229 99328.0853 144278.2672 219689.5686 130299.0211 2631519.3227 230284.6279 715571.8626 1691250.1563 147500.4426 147500.4426 89341.3807 188714.0476 107162.2932 1118240.2289 166468.2236 150144.2892 101931.7065 107922.7259 130559.3718 90207.4508 297092.3043 119988.5692 183338.6847 87123.8304 123401.987 99749.5796 86176.65 181316.4535 63081980 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 145954.985 14458.566 40952.5446 27490.745 231094.8267 39025.6115 63574.8014 60346.0211 65958.2338 49887.1462 73193.3064 132316.2828 1034887.7345 94807.9342 285210.8425 497394.6448 94536.6433 94536.6433 47963.8079 79151.3665 96698.0816 89066.9417 89508.7154 87846.0169 62272.7764 124674.4764 67316.7361 54138.4204 245223.0977 81137.9685 127288.2316 49825.0757 74275.6717 197337.4353 52447.0986 132597.9402 153798558 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 6077.006 16955.5741 10024.1185 2076.7332 4020.2464 7024.2909 4726.8261 33069.5307 5492.8274 4654.0085 9960.2486 9960.2486 38293.1114 8049.0033 8451.28 4376.099 28894.7623 7985.9514 5898.9539 7115.5704 3129.6158 15789.6361 6120.0504 9409.2723 51282.66 5230.4678 4862.1791 3631.1618 6920.575 407898926 dehh Organic Remediation Chlorinated solvents NA Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 5686.7026 9398.296 4978.5458 12441.7859 4445.0485 5859.3718 3059.248 4826.6526 5087.432 105257.2846 8866.3851 5977.21 4923.08 4923.08 6158.4532 16360.7438 5582.1796 4404.9852 5057.7908 6433.1019 4407.3135 3412.6216 8201.2183 3452.5935 12179.3374 5769.8418 6180.9951 4684.0767 4904.1575 4595.9255 4801.1075 7834.1178 332553052 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio africanus str. Walvis Bay superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio africanus; 10446.977 12913.0068 26078.3733 16520.3619 16401.3372 32510.0208 2321.2713 7949.0423 11143.8311 9073.7284 353362.1073 13078.9325 13478.6603 28049.8366 14921.9919 14921.9919 34758.0749 38249.4772 26018.5614 5134.1208 101925.7288 9276.8764 7796.8468 17537.5829 35515.1404 14413.349 43398.4096 24318.5836 28533.1125 11998.7713 13776.4593 67903.4422 6163.7853 93926.3521 328886664 pme Carbon Cycling Carbon degradation Pectin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 97311.5982 248702.3322 652374.8328 49236.1326 46692.7725 6396.0349 18019.1551 42795.9733 63239.819 44139.9923 80118.4869 74247.3272 407819.3409 46023.5384 53724.3774 75739.4785 59730.7209 59730.7209 56579.8299 193158.6678 34275.2516 38119.9862 118686.2791 42907.3403 45710.0525 35047.8107 44575.313 41986.9537 114378.9065 32212.0128 166603.0834 17441.9033 77518.9646 59477.5998 24124.5164 68259.1387 114795205 endochitinase Carbon Cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 4524.1176 6620.9875 103270.2724 5918.1572 2632.4489 2106.6144 192764492 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 34702.9725 29397.3615 14757.8556 13245.5554 40318.1044 25317.3319 29738.5476 22080.4457 33703.2357 36373.9409 38236.7114 567182.4087 111179.5481 117039.115 54191.7488 28198.7168 28198.7168 26070.4008 39177.3486 22796.1094 29876.9774 31121.2077 2647615.0242 24468.4254 18083.4974 53009.4201 20979.8821 45223.4578 55865.4446 34612.16 11925.5501 23871.7109 26668.1114 18890.6119 18428.3042 259502702 ppk Phosphorus Polyphosphate synthesis NA Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 471146.8461 42643.6024 332731.6493 379617.9689 127924.0884 127099.7915 383049.8031 228463.3162 300613.7297 159849.0208 249335.8848 213362.4773 3288986.6654 159430.6253 244773.2591 301786.3254 253258.7424 253258.7424 89120.7688 165954.3243 108170.2353 368379.5487 303681.5265 405736.0707 148232.4935 123918.258 228822.9393 94502.9539 372100.7392 460422.7934 189465.9295 210125.4555 126376.5442 168550.3461 88406.4158 729966.5213 344345296 dehh109 Organic Remediation Chlorinated solvents NA Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 6463.3032 3106.7798 2224.9116 6124.845 3092.2122 117779.9685 5089.0271 4225.8799 4317.2665 6850.893 6850.893 3663.4813 8616.8519 30916.0885 5033.3473 3964.1497 4226.9069 6417.0132 2808.5471 9155.8476 4288.6663 6209.6216 4849.6493 3136.1447 6098.2207 3358.9444 5967.0371 290472354 amyA Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 4757.5314 2410.7066 3695.6335 4198.2062 2660.1819 59583.2374 7166.8322 4382.7506 2551.1018 2551.1018 3554.7805 7362.2835 6697.6088 11719.7189 5208.7598 6334.717 3400.3256 4167.1473 7927.5035 2786.7195 11205.8885 5411.9165 5804.289 2588.0747 4556.2567 4616.0298 16165.7278 6870.3481 237858227 GAPDH_Parabasalia Other Phylogenetic NA Joenoides intermedia superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenoides; 4828.3759 2585.8243 15187.7698 6307.7077 4132.8069 7096.674 6757.3397 11095.5068 9109.8912 3428.5965 260631136 atza Organic Remediation Herbicides related compound NA Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 9445.8422 6082.9481 7376.6646 9167.1283 4554.4353 5839.5883 5598.044 10899.9021 9222.4133 3771.139 273550.3887 9715.8453 11015.6369 5250.8613 3563.3829 3563.3829 7988.4229 14591.1551 9439.0975 9978.4851 8931.7752 17832.5391 9103.6788 5937.1288 23876.9116 5050.9863 27839.0278 9584.2647 12780.1716 6725.5801 18069.1278 22797.8196 6436.7269 36415.5678 73762892 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 57251.2274 83759.6994 18111.4435 45877.099 25887.6558 17311.044 77870.2755 59806.5105 88653.1189 45152.9421 56272.2731 49502.5607 870339.4975 42662.7585 92178.2004 53023.2751 25911.532 25911.532 35071.1154 72365.9895 40601.3771 63088.9885 68642.9441 34276.5997 35291.8518 26277.5356 32166.8553 34921.1858 80801.9718 61469.6814 46318.2673 39084.1853 38490.2016 32612.9173 80748.1809 39692.7319 220964589 mdld Organic Remediation Aromatics Other aromatics Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 22581.9759 13590.8666 20819.0228 30410.6254 4870.0861 17834.2034 12021.6484 18567.4126 14225.9243 18614.8449 21208.2513 148868.7164 126399.8421 14386.2434 14782.561 31029.4324 31029.4324 9256.635 26266.4608 45273.5161 10506.2691 17017.2581 36907.8662 10445.6419 22096.3446 32823.9361 18659.7734 114771.1737 29908.0954 23238.6771 47238.2723 13681.0895 18632.5135 17745.0995 16314.1082 338757684 amyA Carbon Cycling Carbon degradation Starch Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7059.123 12109.1061 8151.689 4922.1738 6748.7743 6000.2379 7347.8489 5337.3454 5146.3843 103484.7508 6771.5813 3967.4137 5786.591 3152.8905 3152.8905 7214.1483 14854.4003 23183.1152 6699.9662 8650.6026 8020.8368 3238.7205 3988.4908 9532.6547 4794.5214 15600.3233 9075.6917 13143.0885 5069.6872 6443.7995 24959.5069 7371.2125 41571.3448 390426432 b_lactamase Virulence Antibiotic resistance Degradation Thiocystis violascens DSM 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 177563.2445 159045.6011 23855.4836 57039.8188 20565.1 116634.2699 53179.6716 87344.2526 46071.8867 41744.0791 83022.9253 539057.4457 36527.7423 72339.7136 108007.7857 61068.1217 61068.1217 127878.5368 130786.6802 53065.5876 51636.7108 89036.6522 3180845.4577 44233.3321 75895.6952 78172.5353 93708.3821 224098.1368 134017.1767 102839.8121 41199.2031 97250.7464 226031.7021 56702.1107 99641.6506 85687794 nifh Nitrogen Nitrogen fixation NA Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 113777.0454 40204.1504 316313.5327 20213.9584 63738.309 54629.3871 42568.9516 13629.236 29456.2706 63031.8757 27125.2553 480319.841 31024.0591 30787.9047 35555.0925 20488.1874 20488.1874 35102.0294 91861.0926 29073.2848 45130.883 44245.9772 84353.3238 60242.5537 30008.1651 40923.2709 143994.521 80840.0589 67398.2005 56415.0727 24873.7606 35770.6283 33296.9557 133062.2002 51763.1154 381198834 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 117872.3206 25804.939 76271.264 64948.7529 46276.3103 37225.3958 76713.9681 42320.6859 27667.4892 63680.0209 55628.0158 37978.1486 1555832.991 232788.1057 59950.5033 83263.6856 49309.107 49309.107 40747.6835 67203.6839 50076.5846 890791.4996 61219.1082 77593.0136 28084.2668 33769.4001 184515.8771 48212.333 127210.2012 56745.8846 82039.844 25851.4546 57825.1027 49134.0023 29113.381 85886.4952 163782701 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 3914.1321 88117.7986 4515.5145 23856.1732 2160.7934 3606.5877 2733.356 67749.8079 5714.171 3476.8016 4507.0158 2220.9196 2220.9196 3757.0883 4074.9709 4622.1243 7648.3592 9377.9097 4653.7745 6907.1053 1996.8472 5432.4442 3308.5644 307353038 arsc Metal Homeostasis Arsenic Detoxification Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 12941.775 27249.875 17362.1032 4980.8507 5197.2982 6379.8604 2972.128 8366.1224 46623.0767 7825.3237 154810.0584 16471.2392 10611.1081 11076.711 52080.3561 52080.3561 4886.8096 15559.0104 9055.6725 6855.0479 21099.5952 9886.0202 3434.5287 6739.3954 8918.9134 4638.1246 19407.7663 10958.1122 26048.8754 8816.4487 10116.6586 10675.419 4689.7768 214815.1919 121713454 nitrate_reductase Nitrogen N Assimilation NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6076.0056 8035.2407 8880.1649 4896.2962 3685.8185 5694.7016 5860.7327 2474.227 87244.5276 4558.8891 7969.0346 2425.0798 2425.0798 10020.7684 5341.0456 12438.9075 5165.7112 5257.3082 3478.7201 2959.0024 9981.2652 3429.5731 14128.043 18116.8331 9860.6131 2968.2281 3695.0576 5038.5399 4124.3117 7997.3902 334891466 linb Organic Remediation Pesticides related compound NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 6496.2917 5295.8262 5674.74 6386.2122 4282.7898 9219.6893 27148.6905 7681.8609 110009.3323 26789.6083 12195.558 6055.5307 6297.7331 6297.7331 4953.4217 20958.2103 9486.5165 8254.968 19804.922 12737.5243 3841.0091 5861.238 13557.3231 9815.6188 24286.4504 22219.0479 10231.8499 8283.1666 10181.2976 6865.7911 7024.198 18344.5722 40783181 phospholipase_B_fungi virulence degradation NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 11785.5747 44230.7534 8166.854 7681.6324 69849.242 4194.4815 6568.2914 10065.9674 4898.4282 174771.7321 9455.8661 12246.4267 8529.7592 5755.4311 5755.4311 9835.5826 12252.2474 16801.372 13679.8992 15529.9474 11816.1964 8911.5517 6120.354 21446.8368 53791.6343 21382.4188 35844.1731 13847.4457 4466.8973 6582.666 6971.4516 7830.3431 17220.8023 365291682 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9687.1861 15398.9053 6682.8452 4416.9377 3019.435 1989.4333 8824.1335 13282.7364 3466.7857 99503.2783 10437.1446 5220.785 5249.1693 5249.1693 5016.6581 11113.8917 7955.7044 4345.2882 8644.1137 5152.9167 7649.4754 4075.4486 9362.7227 3230.9199 15226.1774 8284.1464 10789.864 4129.8277 15031.9324 5023.8121 2577.7714 6757.5815 340531624 endoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 31859.6364 184500.5296 26796.1488 265018.1217 6771.2025 23207.25 43641.2728 47308.5194 24083.1138 63646.5693 46825.9434 365520.2243 32110.4651 19311.3004 68475.685 32844.2042 32844.2042 24260.4757 32481.2252 44244.2666 22952.2015 28278.449 52951.9472 14410.7821 23908.7791 35247.0901 18787.6202 61050.1084 50398.149 44814.8469 14900.0233 27150.5524 34816.0828 24174.3694 20020.7828 373941206 arylest Organic Remediation Aromatics Other aromatics Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 6336.5435 4046.0379 4302.927 5980.089 3326.5974 161985.1674 9239.5989 8199.6403 3014.3428 3014.3428 4805.0164 10002.9851 6448.976 6442.3865 4809.8643 4592.5568 3193.9001 13410.8113 7543.3278 2769.855 15117.4784 8745.1844 11612.6202 3110.7609 7657.4619 3954.8816 4146.1133 9243.9789 409118724 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. Chol1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9235.4149 33926.5043 20492.4893 1792.4283 2946.4879 10675.9136 2644.272 161065.9214 7363.1744 3588.6764 3588.6764 5940.6399 3512.5634 6851.2699 16665.1 2809.6329 4696.6457 5551.9095 12487.0475 5749.9107 9982.5092 3564.3828 4694.1282 8651.8686 145558153 fccab Sulfur Sulfide Oxidation NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 52894.3341 19437.031 133834.2511 47114.6399 43897.7144 70813.4066 27876.6778 41789.7089 24718.6665 50608.9551 79338.7276 36005.4603 1024841.3693 59305.7521 48783.995 71155.4414 31685.1656 31685.1656 57645.9172 125356.3293 44559.4678 90718.461 127564.6805 52771.6692 19184.5603 37840.1968 106245.9601 23825.8519 96464.4779 52830.4326 84272.5719 24457.6745 31076.914 60144.6413 23297.7467 39909.0462 89052885 alkb Organic Remediation Other Hydrocarbons NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 19337.9683 40795.1142 16140.2701 8912.3872 13573.5498 11027.8078 29160.0534 36565.5289 26497.0413 14075.0451 421458.2043 21183.723 19605.9981 16366.379 11102.8465 11102.8465 14336.365 30421.892 16267.9221 45621.2998 35147.3743 26329.2621 16128.0485 14758.4144 34287.1037 26579.6188 40553.2915 21152.3807 26245.5903 20101.062 12864.6891 13012.0762 8485.1919 29555.6419 319742105 narg Nitrogen Denitrification NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 26230.3166 28137.9653 84639.8701 159358.6826 4982.7266 29098.5919 9187.4744 12228.8398 14046.0337 19505.8094 8368.7209 190193.6934 11406.3651 24450.0914 10155.4009 9068.4956 9068.4956 11146.5531 30788.9831 14751.2959 22786.7763 23754.168 18756.2243 10520.2953 13899.8891 16802.6508 12478.549 41385.8919 34968.9424 18587.3965 29740.7721 12858.2144 13044.754 8053.5618 31678.853 70996440 arsc Metal Homeostasis Arsenic Detoxification Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 4510.2303 2956.1951 4344.097 3774.4376 6914.2085 2927.7569 121371.0089 4763.0174 3298.9941 1862.7564 1862.7564 4198.9692 9434.8466 5132.277 4179.5312 4666.9229 2375.9398 3190.5172 6502.5196 2856.4379 9652.0081 6831.4277 3146.7232 3553.2472 4386.3973 2951.8835 9343.8102 51534775 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14000.7827 6804.2585 9238.6696 17403.892 5485.5743 5378.2453 10582.7448 4281.9924 8385.8911 13517.9633 5214.6699 232602.6617 13347.5158 16127.6376 5545.7236 5307.6225 5307.6225 9954.7402 15602.3267 13008.497 8363.2057 11447.528 15049.1487 5423.2924 7251.9873 12964.0323 7419.1432 13122.6569 22459.2728 16484.9204 6575.7817 8114.0754 106078.2832 4820.9011 17557.2678 192290196 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11913.78 77956.244 23006.4407 4106.3785 8887.6061 15494.1504 5910.0934 48356.8127 2302.6337 19969.3703 6309.4681 9297.7616 171238.0717 11689.297 11220.3867 60317.5365 3654.5091 3654.5091 6264.1448 18033.84 6897.6114 3868.8825 7908.6515 5403.1894 13942.0462 8177.6356 7149.3852 24018.8896 10391.6148 9986.1736 7140.342 8294.0211 12144.6969 4404.1371 33135.8582 74421045 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 111985.1341 231386.7843 6650.1948 51343.0709 6542.4043 4758.2979 30011.7068 47911.9424 9880.8948 9993.9169 11575.0778 198143.3171 33773.8721 22180.579 14048.0112 11131.4079 11131.4079 9105.7435 22971.1616 15901.7898 27341.9524 9139.5231 34191.1514 11241.7285 27000.7386 21076.2066 9924.7301 39742.8548 173151.0103 22710.4086 6277.1585 14788.3481 13141.7106 6231.7345 10387.1295 18160861 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 22689.3083 10973.4105 6421.2329 12509.3093 7486.4859 10855.7364 15662.6884 9880.4562 44498.4447 19651.1737 10231.2246 262150.8618 19007.9378 66601.3996 28604.897 13320.7295 13320.7295 8829.2537 21111.0844 14046.0744 12077.4667 78960.0267 19551.8292 6757.9646 9002.4487 22704.5968 9754.9229 37775.9278 15380.4122 26354.6553 11026.1428 14370.6719 14746.5236 11426.4394 25794.4846 407939662 dehh Organic Remediation Chlorinated solvents NA Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 33972.9513 45106.7426 43438.2784 30841.7694 9509.2805 7829.7383 14740.25 5132.6778 15945.0429 37756.4072 239166.4113 408277.09 56582.6801 33731.5457 19133.3467 19523.7381 19523.7381 8419.8638 39271.1363 28022.7165 12486.8181 17793.4292 33522.4183 11491.4282 51585.5773 162420.6665 13797.424 1213814.8317 43453.7942 35047.7582 17885.6883 19012.5536 17135.1245 11176.4546 17366.3742 116804546 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 26355.4341 7280.4575 10534.1436 12901.8345 5197.908 5502.5021 11092.4066 29874.7531 16995.1481 14138.3732 13873.7399 330549.1402 36087.0064 18075.2664 10441.4706 7638.3635 7638.3635 8533.964 23207.6441 11568.6094 16222.902 214242.2664 20359.7784 8818.959 8267.144 53600.9078 7579.0981 35001.043 18656.6093 17192.5532 10228.6496 12875.6851 15282.9091 11087.0471 15049.9826 310631250 arsc Metal Homeostasis Arsenic Detoxification Enterococcus faecalis TX0635 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 4914.7548 57411.4909 2492.2366 23066.4576 5782.1029 8147.4071 4468.8104 6415.0368 4512.9971 4136.5774 17591.3678 17591.3678 5645.3634 13172.2024 5412.1299 9620.6959 10405.6837 7755.0036 3748.485 7469.7194 9714.2124 4490.3519 11438.9195 7485.9746 13876.9299 7495.7832 9546.6203 22606.4101 4661.9599 5539.543 77820046 nirs Nitrogen Denitrification NA uncultured organism 55111.5079 93084.7837 21194.6909 21058.4984 8635.1007 32665.1877 16768.4616 10078.0893 18545.1208 42485.2552 53337.4095 398226.1894 23210.2007 40772.2936 68117.7513 24099.692 24099.692 17539.3108 39202.8447 23400.0957 31338.3164 55833.3414 36796.5598 25727.3436 16833.0353 29650.5705 10702.1622 57881.1517 19367.2413 30458.1915 15194.4132 19554.0144 20861.4113 16050.3971 37131.2497 158138798 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6500.061 5401.5067 30574.9889 5436.6875 9718.8637 11307.3375 4897.779 66370.8687 45820.6536 3827.429 6105.3728 6105.3728 6642.2219 18668.6989 10353.1241 4723.3518 7836.6595 3218.6603 12764.8423 9171.1729 1919.4594 6765.8012 4504.114 31455.156 145242544 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 5130.1092 55605.3315 6767.5039 25611.0845 2760.0764 3135.922 5727.3977 64600.8049 4896.8433 2576.0406 2576.0406 6514.607 5053.1134 3845.6166 2900.5853 15367.7215 4997.7402 6148.8978 4383.037 2857.91 2558.5296 4968.476 378402048 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 7840.2735 80408.2174 9048.8278 10712.4191 15290.4947 7933.2741 6521.4777 7676.1832 4055.2917 277867.162 8978.4738 4428.3786 5258.2582 9451.5135 9451.5135 4931.035 15119.4397 15180.3992 10086.9561 9458.2388 7231.5321 5000.8414 30363.6445 10238.826 4549.1847 24742.3592 8399.0255 8875.2106 24420.7378 8363.3009 7891.877 5027.1708 5916.0172 149203282 exaa(moxf) Organic Remediation Chlorinated solvents NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6177.2032 6193.7706 5127.3345 2197.5346 63674.265 4033.1312 12917.5681 2756.185 9017.3289 4625.4535 6323.834 3261.6024 2338.9891 3066.0722 8456.9836 4658.7947 2707.1612 3617.7144 3323.7596 302527949 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5390.5655 6686.299 31175.7079 30082.6618 8380.021 6135.6563 5619.4998 10569.3473 6514.258 13756.9738 260838.4835 7963.7646 9158.5991 14788.1597 7850.5529 7850.5529 8367.2341 12244.3264 8377.0381 56031.5759 7400.6681 50168.0266 4357.0335 14684.9752 7164.8679 4765.6499 16404.9696 5199.6963 20835.8142 6842.6228 5811.607 6550.6955 8591.4683 9055.9311 226318817 gdh Nitrogen Ammonification NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 86051.8172 8633.5339 48342.6535 9061.854 11060.1501 33621.5847 12672.378 18753.8079 62209.1732 42952.8965 1000581.2642 25575.994 27061.7395 77109.1618 43016.0793 43016.0793 17718.7937 63874.3519 20926.2304 36568.1168 36351.4881 17060.7381 20819.6219 58476.2515 28813.2011 56355.3993 67720.5283 142420.9946 44445.403 17027.9345 39404.9959 83730.6907 11428.9627 24852.1693 392402270 amyA Carbon Cycling Carbon degradation Starch Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 196722.9158 31362.2437 174223.5666 273335.8658 133628.1987 62979.8377 91521.8319 394383.5002 107631.8231 149167.298 130128.5963 124613.4844 2328504.7031 117567.5084 180657.193 161841.8901 237262.9671 237262.9671 160908.9292 150656.9375 88709.6975 459806.7793 221661.627 117930.7348 76102.8869 109225.3408 125544.6199 114291.256 445538.6487 107179.8378 139816.7457 81210.3869 160491.6737 127030.0905 85380.4509 294284.3932 37925891 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 10037.005 23750.1891 4582.4475 7856.2123 29560.966 6486.884 7983.2196 15610.0826 4608.3851 1096444.9475 5209.4178 11133.6372 5288.5501 7143.6117 7143.6117 6948.8863 25969.6666 8165.764 18986.6448 14696.3257 11448.1933 8701.5093 28798.6496 11889.4428 11354.1342 73675.7525 11948.8619 17328.726 5762.8626 8414.788 11684.0126 13174.6837 17016.7565 397334965 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida DOT-T1E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10655.3457 5909.6874 24024.5117 10754.4324 11290.5982 7856.6327 4893.9076 4193.0687 18942.1093 13534.6511 9960.2629 105377.0628 12071.6651 10472.0388 23422.4422 7657.431 7657.431 7882.1331 10764.7978 6729.7782 22806.8864 5622.3204 5361.5594 7134.6546 5417.885 11892.9337 5463.303 20036.9256 11594.6707 11592.5198 8288.7983 5980.1662 5564.6247 3256.3279 11424.539 296013024 amyA Carbon Cycling Carbon degradation Starch Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 24307.125 5492.7643 25918.4972 48235.3375 17178.7887 24267.5683 16769.4261 7350.7495 6604.0088 18602.2279 9159.0576 483749.6721 22251.0531 19773.4098 27284.7229 18062.1558 18062.1558 175656.6472 110208.7624 23155.7493 18510.4302 33824.0607 16036.2665 6441.9383 10736.6023 30523.9307 11392.4858 49560.7975 27298.3811 29395.0958 12332.5505 25074.6448 12705.0747 8480.6253 8546.7595 319799109 arsc Metal Homeostasis Arsenic Detoxification mine drainage metagenome 12299.2863 10475.4573 6452.0228 13883.7645 17775.9461 42873.5217 16785.6151 18811.0088 20055.3611 12215.7897 424706.2538 24978.5306 737396.0126 21408.9688 10363.0741 10363.0741 9807.9981 31888.2615 17867.078 25350.5525 32691.3852 18030.4535 12511.7711 8309.4366 22659.7625 11288.7305 45096.0548 12396.9275 23099.1766 10172.2711 19370.059 13668.5792 14354.8827 32264.2841 255292321 bphd Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 6693.266 3084.286 2859.9193 1983.028 3588.0357 5928.9081 109328.4354 6851.8728 4830.0157 8959.9448 6508.8018 5368.7864 7173.9889 6217.5644 4081.995 4809.8532 12114.5825 2741.4876 13043.3121 12214.2984 9320.8596 5294.3522 11254.6546 4820.8273 2820.4451 27733.5069 300023395 nosz Nitrogen Denitrification NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 7925.0894 2878.611 2782.4296 1977.0294 2381.707 9688.4289 9135.2927 9135.2927 3917.345 5435.8693 2667.6325 13359.4771 2645.4996 2579.8172 302335100 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 5797.3205 5795.8446 4330.1018 5292.4209 2614.9892 3646.1564 10567.1929 5583.5209 3082.8435 11120.9479 7929.5825 7422.0733 6252.9125 3659.5456 126708216 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 37492.4142 14787.5654 14349.7673 33173.6747 28237.7233 17276.137 44278.8357 12040.5073 23659.9751 201844.6683 19338.3993 29758.324 15282.7885 29142.6412 29142.6412 12221.4217 19158.1989 16072.7616 57616.399 39586.2584 10231.4171 6713.1232 51727.1263 29866.0749 16014.9614 58900.9039 23445.1016 48097.4493 9546.2507 16865.3239 25850.7606 20992.5358 14557.4686 33150446 Sir Sulfur sulfite reduction NA Porphyra purpurea superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Porphyra; 76557.7929 287867.6279 53245.1171 153438.3787 82444.9031 32664.1443 56930.3095 117678.0816 45056.3445 70602.0648 75513.4832 43182.1139 2081660.2852 115993.4816 87938.0489 106315.6727 48668.0981 48668.0981 66333.2265 99235.6482 62707.4917 127657.1153 92875.1004 131245.1564 42712.5774 38737.0459 93415.1557 31790.2767 130072.13 41292.355 104984.2858 36552.2777 49520.255 63615.744 36414.1215 112923.9111 90655551 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 4N23 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 46422.1841 3622.412 1939.8136 1939.8136 75957.5749 5754.2557 6004.8683 8242.495 1879.5561 2542.043 3806.1403 87080641 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 289135.4602 2005.3018 2883.4835 6903.8133 8121.3422 4538.1493 12293.9883 18505.70825 6292.1306 5149.5241 8871.6322 4145.1864 2442.1744 9432.9992 6999.2382 11377.0641 3110.7746 6229.92125 10294.0308 2857.7001 381198833 catechol_b Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 11620.3032 46262.4687 36680.6743 10689.0825 5944.1093 13272.5583 6951.7542 5711.3733 10273.623 67008.3727 27792.4181 258152.3534 10033.5764 76792.6865 55553.0565 8676.7747 8676.7747 12070.8165 26107.6451 23818.5825 43673.611 101247.8806 34641.07 5849.1161 14792.692 13831.4163 6550.9385 29616.2111 9666.7333 24916.6318 15029.3488 37789.6459 19340.1616 8469.5553 12889.6687 72121305 catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 66026.8222 28417.6122 18332.5524 60567.7182 13051.3247 117170.529 142894.6914 51146.1427 28709.5347 53071.2846 275958.3555 657256.2302 57786.1149 78065.8897 87543.0883 83643.1094 83643.1094 28794.8016 60700.456 69154.4292 54007.6614 235388.8218 61580.2743 191814.9455 60074.8351 64431.045 94434.8125 107208.0494 65384.8766 98394.069 22615.6745 73074.9731 98439.0995 34035.4014 38788.6231 47076737 narg Nitrogen Denitrification NA Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 48703.9901 24022.3759 91441.2673 5610.3086 3580.6689 19742.6909 11105.4025 171171.7469 185314.7798 27596.1289 27152.5408 16581.5184 17472.4467 17472.4467 25628.1228 144667.3919 9724.7955 54657.5127 15778.6047 10190.2266 260318.1897 134112.0427 22791.9947 54856.1909 1081926.5037 10035.5597 16941.6741 10571.8319 18157.797 22268.1986 147408.8408 16522.0321 157368303 amyA Carbon Cycling Carbon degradation Starch Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 19131.2219 19035.8702 10981.0121 10784.3068 27287.761 51335.1785 6899.9449 15620.978 8033.4174 20211.4848 19771.0093 18341.746 320674.469 18695.6002 27242.1418 93985.8617 10459.4078 10459.4078 12915.2741 51396.4503 21433.2767 11179.574 28997.6231 26384.7226 12798.0328 10910.257 38585.4792 12816.5616 38851.3191 36096.927 28514.2818 17237.6832 13148.0821 12854.3618 10032.9959 21333.3288 311070003 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 4899.2894 255532529 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 15496.456 95491.7279 6222.8024 24135.2365 68845.8303 12466.8998 6037.2635 14662.0276 14693.8746 6038.4722 238768.3798 16801.4979 10468.8694 6077.8092 5741.2721 5741.2721 10360.6383 27304.4665 12178.5392 9939.9769 12982.0729 12761.2967 6637.434 10722.1203 15124.9378 7587.2368 33687.9585 11194.4075 16659.8371 9618.7518 10629.3539 31169.6628 10531.2575 18133.9222 340357402 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 58255.4703 22164.1077 65720.3631 76664.2269 106867.3143 17418.2889 29186.4867 41246.9624 34251.2299 46524.3496 44176.3208 32081.1593 5907775.9635 43524.6836 72445.1639 67887.8457 60768.7952 60768.7952 26751.779 42160.8467 29656.1569 59482.7161 41136.124 44059.1791 21028.528 41060.7279 47335.3908 19576.1652 76713.0434 31108.8606 64096.0556 23255.9391 34058.9084 59067.9691 17106.9571 49873.7769 350530324 ppx Phosphorus Polyphosphate degradation NA Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 7234.4668 5133.6018 7260.5862 7534.4024 9268.3089 6576.9799 6958.1565 7827.9574 7993.4402 10363.6425 167742.5363 6673.5025 18327.6548 5316.8578 7659.338 7659.338 6539.022 30766.3601 8564.5446 11613.9615 7522.5011 10946.7966 4991.7329 4638.6236 12418.0501 5223.535 15866.0061 13108.5904 9388.1077 6463.8255 7186.7398 10663.6958 5506.5476 22026.0655 339498735 amyA Carbon Cycling Carbon degradation Starch Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 4693.2585 7081.5034 5856.9985 9966.9056 5799.0137 91665.6852 4296.9794 7651.0861 3549.9994 84899.0309 5767.1395 34497.6597 7568.463 8054.6036 8054.6036 3366.7411 11102.6645 3807.4776 3675.7641 6610.378 4188.0374 4215.4858 4115.8156 8198.0877 2116.4734 6052.2713 7807.2079 2365.4536 3226.7557 4909.3797 1942.929 7845.4395 54026830 ppx Phosphorus Polyphosphate degradation NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 10844.3011 4890.1465 12414.7902 17979.4651 10885.1143 4888.2728 12960.1873 22246.2505 8540.1534 40595.1544 7354.8652 7817.088 7817.088 6560.4507 5159.1379 5362.1264 9811.5178 5732.5637 15153.3124 6076.6611 8760.8502 4098.6182 26535.5806 18970.8758 6496.488 10688.9219 5765.456 5808.2532 3401.5934 38637905 norb Nitrogen Denitrification NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6769.811 13404.7221 5321.0262 2215.6797 6241.1224 8103.9365 4743.7635 142196.4705 6207.6036 11081.3161 11483.3348 6283.8869 6283.8869 16287.695 4623.5604 9049.1479 7088.6114 2601.2487 3233.8237 7565.2605 3548.7409 8720.779 6175.2125 7121.0983 4105.5261 3728.2863 8904.5249 4145.651 74136890 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8524.2099 21999.0327 12469.3291 52679.0222 12706.2739 6331.6129 11899.7644 2647.905 7519.0377 9609.6969 6081.2286 180000.4898 11536.4422 10618.9081 6342.151 3292.9867 3292.9867 5922.4896 16758.2876 20634.7138 8067.0112 16805.0861 10937.4193 10062.6471 7297.6557 12883.6293 9697.0102 19728.857 7679.0883 14499.1095 5925.4689 9573.871 10531.0244 6278.2174 8069.7327 187736497 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 13799.4619 5399.8696 5447.7985 5069.1499 8898.7761 4045.7328 16171.1467 4987.5297 7055.5131 6700.5008 105996.7631 8495.2386 7116.3723 2938.7231 2938.7231 7726.3007 13967.9055 6183.4368 5292.4467 18786.3362 22887.4673 5335.9097 4366.9325 7592.6553 4451.3149 16120.5866 6280.1285 16605.5753 4490.281 5650.2662 5395.317 7961.1944 8639.815 284447990 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 6134.7378 21567.4166 17450.126 53946.9026 7209.0676 42053.5441 58504.6078 4691.6358 5478.2235 6973.6845 42611.1975 42611.1975 7523.2987 12605.2548 5302.3532 4068.9176 47732.7985 10694.2412 5317.1863 8040.2983 5594.2105 3403.1646 13036.681 6875.4476 11191.0464 3812.6573 14391.3943 5986.1963 21987.4004 5104.6932 145255355 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 10317.7829 2915.2796 5585.4513 4523.2143 2771.7306 2771.7306 5029.1381 3904.4367 6148.3929 4837.0968 71734541 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 225097.262 82077.5967 239848.8419 107634.5883 128071.0058 96825.6199 132578.5871 265574.9686 192879.8757 313577.4668 182850.9348 159855.712 3326667.2232 246462.5065 278012.3826 529729.5408 223678.1371 223678.1371 112873.1993 292541.437 121976.2159 392148.9088 166432.4539 297551.1084 146581.9932 156969.9119 169140.5718 142542.2671 577959.0602 142785.8333 450090.3085 308244.5214 160604.5327 325235.7735 145027.5656 225772.1496 356642534 dsra Sulfur sulfite reduction NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 14008.1502 14173.1168 16153.3627 11948.5359 9129.6964 6908.734 11032.3459 81002.4648 6201.991 175367.2376 25842.2156 11101.4957 36191.2309 12693.3233 12693.3233 17908.0038 24536.9839 11395.2318 13183.6282 18628.1966 11288.7882 7206.0086 10482.0926 17841.1455 8750.0376 28381.5891 20076.8244 17753.7751 7800.9652 10295.8085 11933.6482 9711.2027 22076.5693 330992472 amyA Carbon Cycling Carbon degradation Starch Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 18262.6351 51009.62 25049.2848 24463.4323 7681.8992 8202.1639 23473.2651 7624.8089 12917.1475 17612.3821 10738.9673 238451.8586 13735.378 22033.6191 20556.9607 20234.8393 20234.8393 9992.25 28168.8279 17055.2785 18576.2092 21107.8534 32940.7252 65869.0318 9227.7285 16336.5613 14144.55 49706.5385 16154.925 21992.5634 10416.1807 16173.8026 7949.2323 6433.0088 17869.477 170027499 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6695.933 3976.4591 3778.5937 5335.4401 4103.5401 4919.1687 6121.0407 2521.4917 69250.9377 4792.3436 6265.5594 2956.7746 2956.7746 2613.0122 7790.7348 5311.5646 8934.5686 6875.6557 9210.3142 2582.4926 3358.4705 10824.1742 3536.398 16817.4056 6946.6843 9401.996 3799.5171 4363.4244 5353.2699 4148.7343 9491.7134 78519228 vana Carbon Cycling Carbon degradation Vanillin/Lignin Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3930.0072 7327.1081 3108.0035 6575.0109 5849.2626 2616.0411 69715.0663 4962.1505 4847.5797 5939.7082 5939.7082 4848.1625 5326.7478 3444.2639 4457.3152 5772.2996 5901.1757 29118.0697 2813.0691 12775.2877 6429.5431 10449.7952 7028.7893 3164.9905 3163.6805 2108.7816 345012665 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 11317.6249 6521.9821 5645.3942 3634.7962 3551.1032 4293.3691 2550.7781 16330.8136 5163.219 10893.2219 5855.0949 4998.3438 12239.2038 8733.4646 2697.469 159039432 xylg Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 7180.3922 20789.7984 8321.8136 8410.56 6172.7527 3117.6785 11283.4536 7504.6202 3367.066 193701.4737 9757.5801 9611.464 6609.444 4077.1554 4077.1554 7209.2895 15368.2244 13247.8139 7291.0697 8211.135 11840.4515 4504.4167 5480.8072 15423.1056 6654.5468 24356.0906 9697.0557 11987.379 6611.9425 5075.6474 6987.4807 6596.4317 12324.1016 256392879 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 88273.0923 357373.0204 9532.4115 13191.8329 57549.288 80056.7464 94806.6542 15888.1178 36126.6485 37818.3664 54624.5573 1075985.7107 33862.0695 44045.5974 44695.4012 50398.4476 50398.4476 72290.1562 75306.0867 31953.8426 32299.827 284687.1813 23175.2245 35027.8095 29838.9733 44847.6122 28299.3827 81733.8175 101542.5374 43740.3324 35166.6658 30968.011 84044.5888 30697.1871 45621.4251 46850292 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6142.8149 2105.6544 6658.1883 3526.8122 4930.8648 6153.2157 6455.9902 5512.006 2167.4159 2167.4159 5738.2488 7841.757 7051.2123 9096.0642 7460.6417 4614.2213 3080.7747 3728.0035 7674.2848 3780.7515 14827.2725 8509.5015 12597.296 2257.7772 4481.0134 7045.5143 9047.8065 11962.8531 390167234 toma Organic Remediation Aromatics BTEX and related aromatics Sphingobium indicum B90A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium indicum; 9523.2479 4532.6949 5326.9109 2839.0327 5391.1719 5342.3791 8964.3412 135879.7283 8745.0159 4286.0114 4104.5064 5586.2432 5586.2432 4228.1253 21500.7435 6699.5129 10978.4115 8426.4275 7849.1589 2549.9502 3928.5309 15337.9879 3166.1442 12853.7164 3506.6279 7792.1441 3776.0041 4144.7203 4834.4377 2834.1587 6837.8266 302383695 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 5727.0325 13198.5609 32113.6583 4065.6268 4747.9246 7364.15 4788.2188 94312.1544 27285.0944 9928.9764 6599.7984 6411.4004 6411.4004 6525.5628 12848.4013 8631.08 5417.5268 6277.7092 9698.9137 4776.8473 5065.2215 14169.3325 3334.7109 19308.3759 14153.7617 13679.2132 5293.0553 7326.0974 5446.6518 3706.9173 13963.3333 21886618 one_ring_23diox Organic Remediation Aromatics Other aromatics Thauera sp. DNT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 10010.5933 9285.232 13064.9335 1251829.0744 9613.8519 15345.2781 3818.8176 5066.6856 8678.3618 4596.0079 115387.2421 15147.60355 10515.6791 13199.3617 3797.31193333 3797.31193333 8932.868 14135.0938 9364.223 10250.902 12143.6377 4701.2672 4558.24935 15715.2928 11798.0599 20553.9795 11765.3112 10997.0769 8150.7746 6769.6764 7442.2206 20968.0917 8225.3651 192764468 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33767.6039 5775.5403 254780.3987 10434.898 15040.7433 11385.3084 9962.4484 69021.521 138842.3207 5367.5698 16441.2993 11983.1507 12611.3578 12611.3578 89706.7997 16475.815 8685.4266 13165.8063 12485.4694 6727.5021 12090.3719 5738.7171 25917.9945 9723.9539 30966.7 11366.7095 17159.9071 8573.097 12452.5864 9359.4598 28677.3059 10295.3416 383774919 xyla Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6095.7635 6829.2185 23897.2126 7459.1042 7497.2388 20269.883 4826.3934 6585.9664 118518.058 5771.4734 6126.1689 22727.6373 5763.5869 5763.5869 3008.3135 26653.397 9996.9906 8238.9902 26943.6746 32648.3193 8492.3594 4387.4584 10852.972 3306.5927 18500.6162 11475.3818 10615.3274 2233.657 6888.8649 6370.6178 10226.8842 8251.506 326952775 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 38966.7737 14011.4159 24607.2286 74402.3721 14448.4879 19723.2698 29760.8252 8311.5092 15556.2929 21334.0753 202683.7399 375184.607 53938.6116 33651.4061 55359.3412 52382.1397 52382.1397 18177.6273 82161.5142 175290.8348 27871.2466 24516.0776 34521.2368 123495.2051 26965.6292 40010.9134 53380.1568 58928.5721 31774.1951 34871.4282 26352.5645 33201.9639 57059.9122 17027.6985 87039.8225 319945328 ppx Phosphorus Polyphosphate degradation NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 59756.6114 121836.9353 14509.4907 15824.5363 40232.4825 14582.8671 110473.6343 13108.7613 17878.3504 84592.0062 69222.037 549708.856 431971.006 36239.3585 50115.8796 35976.372 35976.372 14804.6035 34261.1656 48955.9697 16706.8546 39942.0862 72512.0409 20784.3264 21342.3199 53348.5403 22789.2065 81029.9844 55039.539 52077.2643 31282.8812 45407.4352 44922.2733 17697.8295 37867.4109 169851160 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4772.416 39903.9462 24712.8956 6877.4419 2471.2167 3075.3073 3836.3331 56160.9365 66960.2861 6772.6506 18710.4803 3230.827 3230.827 3401.92915 7527.5243 5335.477 5579.69425 7510.3638 2424.73065 4265.88165 12619.715 2236.13565 6396.03825 6672.52255 3973.29265 3801.4034 5446.7702 2524.9752 6270.33755 313624128 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria innocua FSL J1-023 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 8681.914 8350.3276 3952.8268 4408.686 4327.1807 5311.8736 7057.9579 3842.0822 128142.0753 6114.9191 7828.412 10878.9712 2790.1451 2790.1451 4875.6854 11493.1775 7684.9469 7603.1096 11644.0363 9433.2093 3320.2523 3472.4691 11686.0577 4251.9892 19747.486 7278.5992 9809.7834 3463.7565 5087.6801 5981.9234 6073.5046 13762.1802 309697337 axe Carbon Cycling Carbon degradation Cellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3649.0518 12447.2257 2865.157 316254288 cutinase Carbon Cycling Carbon degradation Cutin Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 8242.755 4660.7202 4116.704 3938.3427 5062.4901 8370.233 3041.4833 134944.0093 5463.9821 7142.594 2786.7955 2786.7955 6023.3165 12897.2404 8326.4869 10688.3486 10917.2584 19146.0318 4095.5554 3298.4265 7996.6391 3037.7396 17591.808 6891.8975 10692.051 2218.2187 4596.713 6421.7133 3960.0623 8937.9903 86357875 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6644.0375 17528.6698 192269.2377 543127.7193 13751.4549 40751.5409 5096.3365 4368.5104 15144.8597 9318.7901 5318.3452 4363.6358 8717.0649 6569.6205 6569.6205 10493.1349 31975.3441 17406.6863 13611.9625 5305.3098 17000.0117 9074.5758 26323.5437 3676.5359 14676.5072 13939.989 183063.5625 34239.3696 105684.4199 20524.6119 7620.5535 12191.387 297627523 amyA Carbon Cycling Carbon degradation Starch Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 9646.62 12114.496 2587.6692 2587.6692 16818.2322 158522680 dsra Sulfur sulfite reduction NA Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 4949.6963 4279.3124 3166.80185 4199.3837 3783.60795 4010.4376 5044.04605 4149.2986 101214.79475 3718.5742 3364.4057 2640.4059 2640.4059 8368.11965 3304.0308 4511.78555 5467.4439 5791.11805 5989.49285 2260.6709 11987.81295 5530.982 9051.89415 6320.0946 12054.84575 3199.0492 5367.1065 5905.38405 9409.37795 302337679 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 7961.8017 8069.6755 3218.9685 5386.6966 7668.4353 3405.2159 5964.7607 3258.5707 15122.7348 5227.8806 5227.8806 8642.3613 17795.667 5810.3711 6065.4628 7007.7289 3999.3995 6541.9334 4396.8832 24367.821 3624.4507 9690.488 7751.8626 8593.8474 8151.5163 5268.9504 7173.9751 14130.9835 392417552 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 14308.3657 4855.9487 12660.7731 6893.6409 9173.5576 5510.2644 10133.9163 11464.4832 6937.2339 170367.22 8180.1785 7429.6623 6211.7428 12451.1446 12451.1446 10561.6009 18793.4903 11815.5295 9425.6992 16187.404 21531.8135 6822.7722 6806.4136 12306.4319 7816.4309 31560.1977 7395.7017 11922.7167 5853.2903 5794.5162 10437.1982 7070.8543 16793.7113 161162937 pme Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 712610.1752 207466.1399 642071.4159 735169.78 1643344.1549 868855.5023 699561.2599 811144.0887 342669.8395 391917.5277 794869.7797 382603.0447 14782523.4931 696478.0023 566762.7716 1442327.6163 649375.7684 649375.7684 488542.3432 574052.2397 563320.0595 582663.7794 757150.183 1051739.8649 350198.0836 309000.3836 782118.0404 331643.5308 1074061.6084 519672.7057 671220.6326 441940.5283 374770.2997 304224.4508 315460.8632 626116.3447 373854794 heparinase Carbon Cycling Carbon degradation Heparin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 29644.5435 30840.5841 11222.375 204511.3279 7854.4261 32328.0293 17818.4648 29261.8447 14330.5604 30647.7886 19024.4809 636436.9567 21396.7873 34208.1267 42315.0237 150864.0698 150864.0698 13680.3225 37043.6282 23473.263 18502.5407 36161.1096 32488.8283 20873.6451 21163.9386 31633.1922 18425.5723 60129.3841 40737.1069 36460.892 20778.8213 25056.2713 41982.2625 15381.1737 36692.8512 310867705 rgl Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 14343.9156 6580.043 20475.0792 16044.5711 5870.5765 5189.8012 14474.0139 4238.5154 76544.3241 6916.4123 9903.0017 12374.9837 6322.853 6322.853 11915.953 9640.4243 13263.3971 15850.7049 5364.8419 7767.3801 19379.0621 4912.9154 27134.4414 15388.0203 15742.9062 7722.6875 6173.0071 6664.5474 3656.3153 7621.9598 299743559 rgl Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 12582.6757 7316.4543 11847.9066 6132.0445 6099.3375 4782.6472 6303.4877 8596.1628 3613.426 101429.3288 5994.3055 14791.4588 6521.9903 5106.8702 5106.8702 4471.6612 7628.5738 5604.6364 7579.1861 7323.8604 9207.4439 4259.3918 3921.5124 12191.5625 4080.576 11785.6382 6958.8368 8486.0139 4922.0314 4902.9323 4074.2801 3640.6308 12163.7226 384086268 TIM Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 38586.3248 55131.163 26049.2722 16492.7926 5181.4888 5197.764 6054.4066 6053.2611 16522.2011 127606.8883 37775.9287 6923.5344 4657.0082 9678.7885 9678.7885 2654.0004 10702.0046 8217.0845 5464.6387 6839.2926 9926.0739 5771.3517 6511.7129 9633.1858 10262.3365 31783.5114 5430.7629 16959.7709 5815.6051 4000.7914 9462.7136 18023.863 148741.4026 94983115 silicon_transporter Metal Homeostasis Silicon Transport NA 50566.983 6046.6613 12140.7443 2437.7473 2437.7473 2731.9525 4199.0156 3451.7631 6025.2704 10047.4799 302464007 pme Carbon Cycling Carbon degradation Pectin Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 119908.6941 31316.3663 32707.3341 28720.48 14830.3028 9873.6587 13768.2466 17269.1254 32893.741 27166.6118 59962.147 39870.8968 1086728.5279 32631.4943 30877.5595 27606.3197 20229.0122 20229.0122 21445.8124 49868.8782 26978.198 55631.219 39864.8747 198242.2959 28144.1009 17443.107 32474.2422 19329.003 54011.9972 18662.3475 43709.9595 13383.066 47076.3197 31346.6036 32305.7831 38901.0947 212530880 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 14019.8796 6462.2351 8657.6237 12998.0429 8599.665 8045.544 5541.3151 10256.5691 14883.8233 9177.7033 239642.5335 15226.0208 15672.9551 12572.7737 6589.8449 6589.8449 9201.9433 23654.5726 15930.59 12609.8444 17266.1604 23238.9167 6861.2754 7357.2139 18103.5512 5611.7609 25740.1906 7189.1732 18014.6262 6206.3014 6822.6959 9132.7704 6153.3313 358422.4724 257870344 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 10154.7052 4395.4189 10352.694 6420.3512 6087.4421 7986.5982 8757.7818 5924.7325 154893.2944 7534.3473 5337.0073 4326.7263 4326.7263 4950.2005 22294.9516 12677.1046 9966.0561 7322.0136 10722.9563 5460.2192 4813.4532 9032.5011 4003.7647 18772.0303 3864.8722 10306.9168 4563.936 5985.8472 6162.6156 3821.0748 13528.6842 347304858 terc Metal Homeostasis Tellurium Detoxification Pseudomonas aeruginosa M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 16872.5416 5274.0503 6281.4719 7974.485 6798.2323 3682.7359 8876.2964 7771.9726 4098.1942 191097.4457 8531.2899 24662.3359 4370.8197 5961.1151 5961.1151 7764.1033 8527.1254 10003.0395 8029.0251 13706.9285 11455.2477 4868.8241 4200.2119 12792.7615 5046.6968 13600.0847 10552.921 6201.0635 5466.4097 7306.7033 5578.8718 13216.4036 255035614 chna Organic Remediation Other Hydrocarbons NA Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8631.0858 5858.8304 149610.7752 3082.8473 3339.3717 62259.3231 8203.1255 3822.6394 214488.8412 21436.711 9920.7914 6615.8613 3521.9066 3521.9066 137384.2348 7450.2065 8936.2009 6365.7316 10217.4012 3263.9275 2694.8219 15094.9213 3567.7535 33086.6739 14742.33 17664.9302 2237.4387 3971.146 3486.6953 3898.2787 13476.8877 325922367 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 14127.8403 21671.3163 6737.0236 24530.3549 10503.4333 7889.5879 19613.5706 9100.2349 9169.9454 13456.5988 14016.3461 326009.15 12822.2162 9959.8794 7458.0219 15368.0372 15368.0372 10056.7815 20826.6288 26605.3804 16352.154 13864.6045 16998.9724 6091.7562 8701.9959 13815.3554 10476.1809 28883.7054 10055.1873 19041.4771 20104.9974 20429.4636 12691.3175 5843.8451 14010.7516 109452497 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6776.9443 4380.8609 7739.6528 6000.6669 5168.5991 3285.1084 5920.6044 6272.6554 2269.318 117305.7639 474410.1248 6505.1884 5343.7213 2859.3172 2859.3172 4072.2469 9684.9466 6861.4943 7828.8928 8654.2424 7950.558 4749.303 3967.7757 7496.2134 3820.1978 19886.9181 9217.8733 13478.2182 5609.6961 6449.6477 5022.8762 5427.2369 10123.0586 134095158 arsc Metal Homeostasis Arsenic Detoxification Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9150.0841 5825.5412 4844.1871 5061.5262 3873.9667 6469.2665 5283.3551 7626.1729 3204.8088 128858.0012 5937.4224 9119.1711 5027.8927 3122.8529 3122.8529 3905.1641 12587.7983 8479.6376 9786.1852 9868.511 9740.178 4236.8369 4583.1909 8370.2266 2987.7129 21319.0984 8782.8661 9197.8138 4810.7004 4984.377 6458.0947 4320.1373 11683.1853 304347094 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 6533.5094 6118.3809 2614.9436 3412.0264 4028.3852 9409.2719 4282.0098 137624.4644 11264.2544 4701.4596 6245.3286 2468.3796 2468.3796 8236.6349 5264.8447 10294.5929 15172.4602 10657.0694 4655.1298 3676.466 8334.7697 3562.6464 13479.7297 8656.8145 3144.88 5984.243 5308.9452 6238.2454 8235.9215 342859942 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 62264.3596 55122.1494 52838.7483 47388.3031 10525.5981 43424.4081 54623.9137 113774.2214 16427.7677 32215.2594 104724.1925 500069.5691 49942.5636 26079.5432 78456.3662 102011.1041 102011.1041 138030.2598 36838.6498 27907.1914 24324.2991 34982.5298 18284.2607 22650.2413 44441.2951 37724.2257 35130.7893 75334.9573 55607.5876 35590.6821 91798.6881 41266.1116 35907.1501 59277.1663 24709.1875 134142983 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4531.001 11036.5861 6869.6899 3015.0579 2348.5042 6210.7134 4840.7013 4360.0782 4392.5743 4392.5743 5428.7966 2850.921 5425.8593 12564.5414 4900.6796 7046.2348 3829.368 3691.016 5733.9353 91788100 mer Metal Homeostasis Mercury Detoxification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 144251.9116 40815.6362 48115.7349 29040.4796 56826.5253 40987.7451 62511.2372 64055.0627 69544.1669 200454.6916 99995.7619 1054744.5703 53941.3517 44175.9347 66423.1333 55132.5212 55132.5212 38621.43 105538.5009 136910.7241 71534.4693 82724.3524 59490.0919 70912.8627 63728.5148 79217.8351 61834.1747 159335.1111 72505.9733 79700.9491 40737.1139 115358.6274 60795.0818 64483.9683 63747.0146 355333712 endoglucanase Carbon Cycling Carbon degradation Cellulose Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 179040.0978 356665.8796 127793.9792 31049.0094 49929.9823 235880.1127 271404.6468 85399.3204 79505.379 111134.0092 64435.4786 4828382.3683 77230.0051 107276.6202 530903.6654 166675.6591 166675.6591 78638.1797 163775.5061 176845.4545 313209.5357 146804.9281 48371.3221 83976.9009 128628.082 111838.9061 55410.6832 491373.6069 193210.1812 191353.3364 151473.5236 96812.8962 137949.8709 76028.049 168764.2115 169762876 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 32667.8648 9096.9602 7249.3494 8827.6236 10780.1601 14162.6153 9508.1221 32931.5644 11809.8372 125965.7903 15353.1936 8839.0899 6950.4739 6029.9239 6029.9239 21112.1253 14505.2974 13810.4864 14075.4469 12282.6637 9175.058 8673.0803 46933.9739 10345.0434 16029.0681 35011.1618 6661.2185 15825.4205 8139.0433 14693.3146 35840.4493 8739.3232 256880.26 330830691 amyA Carbon Cycling Carbon degradation Starch Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 16383.0655 9087.782 4364.0754 9142.6681 7237.0293 3086.4484 3414.8424 17223.9168 5313.0293 61922.271 6768.7614 14292.5215 5525.7563 8127.9625 8127.9625 2927.3232 9493.2837 7787.2147 6649.7028 4631.6163 6391.9043 3569.2069 10387.9707 10674.1851 7335.1243 10339.8266 3816.0771 5502.964 7186.6742 2183.6228 32307915 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 34619.4847 13232.5706 73263.3447 40943.4357 13590.38 74493.1669 28288.6264 18680.6895 37431.4587 19061.4011 32370.0545 781341.3353 52439.9029 27874.7281 54683.9546 21805.4484 21805.4484 23107.6632 39210.8386 23957.5063 66447.6518 54170.4784 86637.6693 35062.1356 25380.0295 48169.2462 44697.2143 78228.5875 105313.5709 38158.8021 14318.6288 32611.8362 19955.8345 12334.6278 49351.3552 295800279 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 11866.6518 169589.3067 13126.0994 20103.1457 23897.392 6238.8767 13028.4029 7611.9399 29708.9034 18183.3863 175458.7118 9710.5874 70971.2773 27605.1675 22844.7768 22844.7768 20249.498 58044.7109 12734.7799 26441.3791 35261.7429 11132.085 12249.8206 15227.8193 9208.8254 10251.915 37910.3043 30374.9232 264816.2131 7361.5273 48046.2392 20278.3532 11113.6866 22324.1356 148557165 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 10279.656 5909.9435 4206.2812 8312.9072 3936.422 16282.3611 7155.6265 109304.5674 12934.5509 10691.9673 6953.7309 21610.4871 21610.4871 3851.3498 9557.4578 9217.994 9214.2665 5726.1304 7962.9883 5262.571 4874.5531 25713.0494 12027.368 27884.8782 26627.5285 17810.3299 3955.0168 5823.0501 7817.9237 3285.6278 70999.5852 260936539 chitinase Carbon Cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 7133.4125 6174.1982 6323.0896 24297.9161 8687.8743 395840.2688 8762.3927 3426.9488 3852.0024 22646.2649 5184.6289 70986.0562 10968.2184 6213.9946 6276.2912 6276.2912 2698.5408 9815.9319 4146.9027 54809.7511 5729.9618 12032.0901 5390.1285 8481.8199 14085.2779 65435.9465 11490.6025 12837.5327 3724.104 5099.8959 10464.6508 11592.1347 374703189 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 40297.4719 38104.8014 20263.9195 39656.171 8693.752 22080.8778 34895.5764 16657.0496 27431.7272 50503.7629 30707.0832 1653039.5135 37722.1001 33966.1917 40522.3908 85772.0303 85772.0303 23609.0216 48020.7562 36071.5013 52214.667 47767.7963 51897.4949 24956.5445 36042.481 41642.8521 15223.3871 124006.6144 43758.7786 42162.5465 19990.6438 33127.7534 24463.9545 17793.9827 36189.8722 78093550 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29257.2157 17898.279 8573.854 10949.9411 11578.5588 283406.833 6744.4879 15069.1059 57142.7711 16142.6335 24459.5918 396367.5654 54563.6681 19967.041 79399.3164 33645.9792 33645.9792 13280.3179 19660.5685 14211.3867 100671.2445 116145.1222 24361.8601 9356.8207 11553.4211 14928.5859 16697.5926 37984.1716 12597.4082 22332.6339 9261.0555 18455.1842 12604.9419 14943.8584 17818.3251 11691635 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 38816.5708 273440.6632 11516.164 107877.1282 11095.7205 17970.7621 143336.8672 11166.9158 108125.0396 34000.9584 53222.6425 1086292.8884 59894.3276 34173.4792 24490.4146 31778.0781 31778.0781 91248.135 68081.582 43003.0756 14995.485 26292.0531 69207.3974 13142.8727 26265.4743 106090.9886 54962.8065 116023.8386 34534.1983 45875.5953 12933.6717 27857.6933 48962.1899 116170.6206 27013.7681 302897284 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 12049.8488 5334.5012 31801.7648 32238.1836 4301.4067 10772.3133 2359.7107 14284.876 152527.854 12206.6658 1186477.9941 10287.6709 194973.8229 15562.0978 8874.244 8874.244 7481.68 16714.263 10766.0479 4390.301 122482.0741 8502.0299 22803.4911 7173.9821 21833.2726 10278.5538 37352.3833 13687.3882 25603.2802 14859.2002 10851.7362 12295.5965 4608.2744 8859.4253 260751751 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9433.1083 6346.4079 36209.4333 7420.9821 3375.6218 3697.3945 4911.9787 10227.3249 6244.3268 4369.2633 23815.7518 10833.073 5259.7287 5082.6722 5082.6722 4218.3948 12903.8706 8024.3099 9132.641 13351.5282 7736.6442 4548.7888 5321.8592 9669.8455 3776.0893 14967.4894 11194.1793 8514.3873 3699.7431 6926.1266 6468.274 2928.3336 8687.3645 56314689 mdld Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7524.0274 5517.602 4678.9197 8687.2341 5871.2613 6902.3243 3242.1118 6683.6164 11519.5374 5122.2762 202452.1716 10206.3603 9403.8679 7485.9458 4317.746 4317.746 6881.1636 12397.5992 12077.2103 11806.4628 12086.0654 6754.4031 4492.5842 5922.9157 14655.3568 6020.1275 23390.7398 13072.2211 12687.2566 4771.7563 6766.866 7848.4679 7088.7741 15067.8779 326951140 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 72569.2999 143834.8898 92239.0998 119306.1301 64196.7761 193895.2304 84288.9272 54099.0938 23991.3694 46427.4197 61259.6008 84026.6827 979760.2177 73006.234 98323.5612 94973.4462 85352.6895 85352.6895 161733.4824 76399.3436 47843.0346 69637.8552 208268.7505 58554.29 93728.5858 44810.2566 81663.9022 59800.6903 126051.0838 43851.7998 74476.4033 31704.9214 59382.723 194947.1411 134784.9131 51171.5599 220694706 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 27071.469 18678.4013 66274.7288 18332.5966 45487.7246 9386.9174 26954.2846 19568.8013 14594.4362 17465.2439 28632.0665 28550.5815 434913.9134 28466.8978 21234.3602 26857.645 13565.1721 13565.1721 30402.2998 37481.8115 21644.1112 26465.8432 24281.521 23906.6671 12451.2338 22664.1654 32296.5654 19304.183 40688.1708 25268.5795 26780.9221 20875.9568 24611.2028 18436.5234 18177.0863 35907.3556 13676306 cellobiase Carbon Cycling Carbon degradation Cellulose Actinomyces naeslundii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 5854.4997 12124.1548 9118.7575 84939.6626 5806.5018 3004.6408 8823.8956 8209.1127 6068.2013 289081.1083 6269.3593 23964.5009 6108.0858 4455.1719 4455.1719 6715.5721 10224.3685 6359.4056 7243.8389 5380.66 2681.7159 14071.2716 7931.392 4578.3501 16138.7492 8386.7939 17262.1114 4652.3845 7513.885 8729.7238 4482.4456 6327.0323 260418135 urec Nitrogen Ammonification NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7396.6814 4324.2257 12402.4929 5684.3015 4616.6552 5270.2761 3079.4687 5217.0565 7055.9751 3831.9708 86753.3759 5076.5784 14359.3658 7595.5594 8442.3685 8442.3685 4645.746 11907.1229 8105.0281 12048.3717 9923.4223 5196.2991 6132.2557 5215.0223 9762.9982 7817.6457 25664.3878 22768.6711 21758.1827 3284.7767 6374.7424 8208.9376 9628.7666 340350657 cda Carbon Cycling Carbon degradation Starch Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 4333.2264 6489.2195 4830.8451 3444.7733 3443.9919 3862.8221 5606.6704 3870.875 50679.989 4243.1512 2593.4355 7542.5458 4876.7644 3406.6355 4867.7553 6318.6 2696.8576 2358.5535 7833.0101 6032.2385 17449.1 4778.3832 9940.8326 3354.3139 4580.6294 2963.5733 6949.707 154243973 phn Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7174.801 28533.7644 9615.8113 15184.2182 2659.0309 4094.893 10555.773 6511.3535 5320.5553 3898.3704 111099.2013 53360.492 6025.0358 8936.4225 4690.969 4690.969 5175.9845 13212.568 7440.3056 9557.5835 10553.6243 4658.9327 5647.5666 18005.3129 3435.4129 16684.9227 8076.2639 14076.5316 5099.5345 6814.6343 6475.414 3086.2838 9095.6213 359372311 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 10310.4303 12207.5447 17845.9892 20619.9601 7608.6489 11322.8465 8135.6558 3009.8455 7899.0882 8500.0187 5063.2573 169389.6658 8384.9924 7157.983 5668.8388 10685.4286 10685.4286 4581.5616 10986.6794 6545.7323 9205.7324 7222.7154 11114.015 5843.1367 4363.4992 12920.3083 3953.4156 13381.4941 6569.2155 12274.3258 14870.7814 5077.0501 4992.6934 3454.7427 9692.3058 115367542 endochitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 16343.3175 9281.8914 55899.8501 6497.9526 9899.3003 18761.5838 7140.9352 12828.6825 17680.5566 15318.7992 2052013.9908 15040.722 16162.8063 9794.0125 4825.888 4825.888 6408.7877 25099.006 15091.8668 13248.4355 35266.9411 18851.6586 6245.7 11562.6468 13275.4298 8533.7857 40172.1666 9741.6163 19847.5316 8218.4215 10472.9688 27491.6801 7126.9418 22516.6687 389863495 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 27785.9635 8054.4045 27212.0611 16983.945 4983.7385 3444.5485 16163.6464 12241.4988 8567.3377 16028.1861 34978.4141 151960.8798 11027.5664 9934.1201 39636.9352 17371.3735 17371.3735 5556.7877 12920.0687 12801.266 10673.2854 20031.2322 7473.947 8173.4707 8691.2793 17489.9717 6052.588 21698.3921 14702.3197 15056.3258 6374.3972 19785.5317 10690.5677 5960.4818 17435.6585 392243825 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 5569.6889 22881.4449 49217.1747 3164.5496 2272.736 8349.8645 3671.3355 4418.4666 2481.0566 85008.0528 5086.571 4594.9485 7432.6756 3553.0211 3553.0211 12323.5621 5379.3483 5547.2679 8389.6852 8048.4255 3557.1218 7464.3483 9473.0627 19059.8701 17526.1477 7255.8169 7837.9543 6619.7285 7890.7557 8145.9434 3953.9208 296015223 linb Organic Remediation Pesticides related compound NA Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 8239.7966 11873.3014 4738.0068 8001.9814 11326.7621 4062.5299 181359.8498 13996.4955 11864.9294 6663.6511 6663.6511 8984.9477 18355.6109 12874.2374 5762.583 7731.4658 7084.2471 3987.726 7836.3767 17743.7154 5149.4178 20934.5277 15541.4379 14188.497 6499.4172 7327.1775 9266.8759 3876.1444 5224.1295 333386139 terc Metal Homeostasis Tellurium Detoxification Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 154986.1962 153454.1547 97857.5541 426579.9233 104184.0411 1319820.9947 233962.0918 422911.8068 81134.5344 77870.62 104924.7814 58611.7889 3865796.8018 110926.4174 147388.2333 142502.7792 86903.3181 86903.3181 59652.9426 104316.3715 91731.9158 190652.9462 123105.7948 108082.4671 66486.6832 53608.947 140890.9507 128318.0762 138929.2571 142108.6215 108653.2233 67078.7082 59130.9316 61224.1643 79586.0129 173613.4941 255293120 xylj Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 82771.1481 10635.7322 30928.7437 414734.0445 80198.3199 40482.1033 337545.4885 54908.4384 53798.7211 37094.3928 645798.3605 71949.582 1231583.1241 70536.6765 62144.9885 237215.3085 117523.7315 117523.7315 96208.1809 130466.5082 45397.14 36984.0483 69176.1454 95344.0265 37730.2241 140136.2945 66367.0106 90266.4774 218976.3141 97491.055 80681.2781 31434.8414 58949.5995 46903.228 46112.0124 124032.3205 239506387 amyA Carbon Cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6028.2087 2222.6541 2450.727 3201.1349 2862.4117 153077.8656 5715.9941 2639.8677 7479.7341 4684.1535 4462.1109 3041.1427 2288.6091 12821.8243 19964.8223 5127.5803 3455.8452 3629.4832 3747.9055 27329.1852 6931.8746 367043112 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 7148.148 92137.5079 18582.8032 12986.7093 4025.7241 28547.3738 28464.6878 6415.5048 11307.1347 4121.9273 128239.9002 10947.9158 11868.1839 12478.2936 8734.6232 8734.6232 5864.0705 6763.2022 8004.8026 6035.807 5098.1073 5749.148 17155.751 13282.0667 3834.8689 45925.9887 16601.3518 18351.3798 11787.612 7803.8102 58018.3496 2486.5445 4289.0794 375310878 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7007.2124 5415.3689 12902.1831 7703.2526 5590.3541 9675.5989 6141.6634 5547.3489 7686.0509 3949.5987 123709.5101 7902.6115 8827.9809 9073.2542 4547.4233 4547.4233 4679.343 7408.6218 7812.6051 5989.9909 5042.5652 3364.3182 4367.9959 14130.9569 4644.8154 14898.197 7315.863 11716.9398 4372.9931 5183.499 4894.3882 2900.6586 6991.7292 57634832 hao Nitrogen Nitrification NA Nitrosococcus oceani superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus; 25281.1396 17585.0748 27479.743 36647.0898 320144.1954 41723.5897 48972.9118 35479.078 13496.3352 39481.1134 50557.738 33590.8236 1518387.8308 202047.7767 76285.1826 73621.9464 48362.4931 48362.4931 24374.8491 70963.9594 29310.3796 38534.6748 28524.9192 48625.4335 17137.2511 36855.8739 370974.8104 33833.3108 109060.9004 42369.8881 88290.0918 24974.8749 39187.022 29556.7486 22680.4167 59475.5453 227821234 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 103168.5385 39953.6691 13197.4439 94497.0873 5935.9808 32792.8341 12944.8275 68325.7904 16157.8397 16510.6442 23778.5048 357670.8305 21428.3384 19984.0252 15038.5454 11450.145 11450.145 9107.1904 44611.4339 15910.5574 24378.217 302551.8081 16858.6433 19926.3087 10481.2904 124472.8416 13631.5908 56633.7732 20570.5983 37621.537 63595.8298 19792.0017 22529.5691 13664.8579 17837.7215 115254579 phn Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 107920.6022 79811.023 161271.5313 795347.0674 146326.2175 128022.4328 22934.0884 363347.6809 66962.8137 214950.0834 116907.2212 122017.666 3085515.8516 149455.3799 220891.4509 205247.4346 128492.8028 128492.8028 197714.6285 123693.1652 85690.5604 90796.9873 305537.4712 41638.5683 46680.2758 127719.4208 151948.0121 179361.1867 203060.851 277820.7204 219077.3868 113698.9541 69124.3797 215798.6558 80278.406 431239.1414 384083826 soxY Sulfur Sulfur Oxidation NA gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 78750.5359 67349.2613 53867.3335 252895.8355 9092.0041 49472.8161 18920.2259 21375.4751 27562.4155 45569.7981 23612.1189 1376540.088 96499.6798 45226.6783 28787.5274 29236.6937 29236.6937 22151.0955 48284.3025 27724.9757 36430.0007 33405.9244 183547.716 40557.8343 27718.7204 36504.2728 22811.3888 486802.6074 85468.6305 32690.3807 16231.0926 24477.7674 55332.6947 22934.7509 35571.1967 242818857 cellobiase Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 10572.4696 359463396 b_lactamase Virulence Antibiotic resistance Degradation Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 5009.6022 15037.8977 8227.4662 4207.1194 7156.5055 4184.955 8893.2056 2765.779 5138.8168 91777973 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7305.4535 2748.9057 3811.9895 10064.0696 7154.5408 6397.8616 3540.7494 10014.0378 2484.7976 8119.3924 5515.491 4712.8844 1865.5837 6257.8124 114328503 amie Organic Remediation Aromatics Other aromatics Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 32252.8208 1060005.3395 80838.2785 10741.1637 6862.7479 2519.2675 9386.5104 6521.5374 116274.7007 114729.8027 12632.3205 11561.5965 4237.289 4237.289 5767.7641 97245.0888 14695.6378 9859.9085 17844.4587 10538.8473 31502.5567 84204.9748 12494.9339 24625.1382 31261.4737 9327.0022 14586.4573 7460.4475 8549.6314 10390.4203 47145.8087 21979.8241 302431104 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 14189.0482 31797.6818 8913.4232 13318.3686 31678.3361 47608.8979 9259.7057 35329.5869 5301.1509 9599.7996 16125.1259 8374.7858 273541.8939 17496.297 14971.6324 26975.574 13488.9582 13488.9582 41037.2925 28041.6604 19935.9906 7428.1609 12720.6284 11313.5045 6486.4031 29779.7707 21833.1369 6729.8062 39087.5528 20646.7955 31043.6812 12672.167 12181.8123 30839.0153 7138.3682 18782.3875 372266296 amyA Carbon Cycling Carbon degradation Starch Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 49629.9839 7463.6774 32938.9625 22025.31 7405.8696 22116.6977 370992.2374 15272.6411 35970.2091 49966.0179 81554.7357 292791.8196 215513.8478 34412.2652 29015.5317 64760.3406 64760.3406 42375.4483 215313.3299 95035.7668 29044.6805 107403.0619 30380.8422 15409.5809 22553.622 32109.5825 21904.9709 96061.6942 52116.1792 184167.8675 39877.8402 29074.6003 32837.5367 19689.0286 30886.0173 325979740 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6270.0154 10248.7311 6956.4932 16832.5297 5920.7301 4134.753 4381.6802 3399.0948 9453.4901 7152.6528 76916.7044 5789.9485 17229.2316 40828.7473 13845.2247 13845.2247 5846.8212 10123.568 6403.672 11741.1334 4948.7527 3752.5504 5822.3835 10717.2879 2846.8057 23864.1994 5112.2399 9748.4399 3046.4974 8651.125 8953.9899 4676.6618 6426.8849 8515797 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8684.9305 42192.9241 16188.5035 2374.061 9642.7251 7952.8634 8414.4738 5086.3127 94188.1526 6556.5491 3759.0402 10066.5339 19517.8422 19517.8422 3501.2671 14934.0845 5924.618 5557.3525 4996.6378 5157.225 4755.1157 2989.1956 9524.1489 5357.6964 9163.2136 2599.9525 3275.1686 5720.3483 3550.2018 9308.4819 22255726 nifh Nitrogen Nitrogen fixation NA Mesorhizobium sp. 128a superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 6825.7923 10557.3688 4118.1899 3661.0228 14481.1098 7214.7801 5753.4897 177936.2892 6517.0822 10848.6052 12173.1522 9833.9665 9833.9665 15035.765 7245.6833 14185.9222 10011.8745 7134.6938 3995.5176 11755.8685 13625.1771 2617.3988 19593.6347 20251.0256 15910.4895 5439.2078 8030.1228 9382.7016 33684.5514 5483.0033 151359553 xylanase Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 125715.9199 14085.8769 52020.5016 38884.2704 31403.5723 44117.3514 25011.6288 53323.8665 29274.3439 99341.9683 368842.731 90988.7451 1524050.6357 65845.0742 87429.9975 98998.8549 102750.764 102750.764 64623.3317 75166.9801 55259.8258 1532013.1591 150870.6906 80486.0872 43756.1364 80860.0488 64259.2946 65392.5132 141682.7033 90551.1295 74174.4059 56519.6948 76174.0241 85187.4549 81397.5972 363131.1302 124488241 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 63399.0396 32964.0751 44353.7738 75628.7204 24609.6014 22122.0259 51728.9704 77518.6183 51669.3289 45715.193 63071.1616 36645.0214 1211464.5331 48018.2162 78676.3972 136925.3853 91496.5072 91496.5072 38957.9673 81819.4071 126663.6812 98887.979 89199.6659 74048.9579 34991.2582 43775.7907 53445.0232 36188.9627 138401.065 323798.4181 88391.5593 80419.8055 46438.0018 48351.0667 53230.8075 79906.3389 298346580 sqr Sulfur Sulfide Oxidation NA Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 53815.3967 17816.3357 167071.7805 11963.218 13556.698 162669.096 31912.6154 32152.6821 23166.1981 22610.6507 470904.3972 37480.5589 19146.5923 57069.4504 15603.2075 15603.2075 14079.7751 47598.2281 20130.7951 23896.7684 73189.9462 221070.963 42635.4783 13831.9409 127708.7346 160209.8419 17634.8288 125359.203 24879.8728 14458.3845 41144.7758 22935.67 46408.3799 19944.8527 396931390 tmoabe Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 16159.5169 11891.7857 6142.7914 2606.0466 2606.0466 2533.6631 7920.8468 36388.7589 313884667 gdh Nitrogen Ammonification NA Eremococcus coleocola ACS-139-V-Col8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 4982.8245 8423.4003 3924.3225 2555.3418 3854.9604 4207.4193 6618.2112 3765.7337 87776.9376 5878.1196 6711.1392 5701.4835 3679.2762 3679.2762 3562.7166 8794.0651 6913.9539 340355.1352 5242.1744 7895.2777 3854.5124 24847.0547 3741.4671 23879.6384 6591.7453 5595.9851 3296.8319 4958.2522 4397.5582 2369.2233 6917.5785 197299320 amyA Carbon Cycling Carbon degradation Starch Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 4466.0409 21056.1952 2532.3278 3552.2245 4310.8014 4158.7116 10547.9309 16045.1129 4596.4028 4596.4028 4739.154 5573.9029 36644.1256 4920.797 3019.7185 6843.4105 4894.8337 5308.6119 338461.4034 2666.1963 3550.8764 3528.8652 4877.9299 398959333 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4495.7041 4472.3675 5878.5566 5636.4347 25333.6564 25333.6564 2776.3445 7002.9175 3502.6785 4536.3774 2289.6715 2419.6098 6078.5892 10600.7581 7461.916 5356.9725 3153.7875 4050.3943 4292.6828 7254.2678 197104901 arsc Metal Homeostasis Arsenic Detoxification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 5462.1664 4617.8399 7008.3902 5691.6515 2560.1553 6088.0851 22661.348 9318.536 4253.6813 5903.4069 3976.917 6436.4675 7129.2164 2786.1478 17029.4948 5417.3338 5751.5193 3811.3258 4474.3699 4632.1114 3668179 mnp Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 17401.5779 18346.7446 9092.0198 6401.5819 152059.1004 3604.4613 12680.667 7064.4606 41377.6091 13012.353 14697.6935 391085.7978 10271.1144 8434.9283 14213.7813 25229.2332 25229.2332 11326.8405 18161.2048 12701.0273 9668.7863 22982.5288 41957.9673 5205.8072 17763.1056 26056.1843 6377.4458 21147.6413 32626.6805 64026.2073 7930.239 13923.3654 15469.9296 5830.5877 13042.7574 299800799 assa Organic Remediation Other Hydrocarbons NA Desulfoglaeba alkanexedens ALDC superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfoglaeba;species:Desulfoglaeba alkanexedens; 5689.1118 5399.0117 6502.9085 5272.8287 2290.3676 5857.8973 12302.3084 12302.3084 5222.79 5490.3071 5605.6653 58085.3215 34274.7355 2853.7888 8937.63525 4023.2148 3000.6129 2285.6158 2735.8555 9220.4281 109456299 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9034.8675 23062.6734 3075.6499 5979.8155 8975.986 12161.6938 8604.0691 3811.1927 167662.545 7630.2757 12322.0239 5138.9972 6498.198 6498.198 6552.4035 13315.0168 7595.8418 14355.9396 10031.5833 5309.7314 6346.5116 11186.6747 5909.099 19055.2157 10828.0074 13853.4964 5233.4429 5996.6213 7422.9905 3384.2043 8258.3918 322719080 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 13016.9855 204164.6367 30544.3419 6477.387 11171.823 11171.823 9453.3166 145226755 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 155869.0837 6212.8648 6696.5739 17020.882 8242.8911 5568.8571 35687.9475 12308.6547 116505.9561 15172.6816 7661.8646 11590.6212 19676.9275 19676.9275 4876.7659 36383.2241 9959.6207 13075.6144 6525.6596 9317.593 5127.8893 12943.9088 8532.7009 8272.8826 20163.5477 9157.5298 58795.8047 12505.1209 9793.473 8490.0784 58343.9543 15612.6512 149783597 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4441.3284 2609.343 5229.8319 6589.4959 1730.4777 6515.6748 328491672 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 4084.2759 16545.9272 20130.2538 2015.2391 2979.3991 3859.8354 3249.0525 6297.9125 6297.9125 3315.7955 8570.1767 2001.3702 16600.9338 19327.4609 6471.4925 3143.0286 2536.7531 6003.8917 151302260 aps_apra Sulfur adenylylsulfate reductase NA Desulfonema limicola superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfonema; 11574.9051 27016.0101 6568.8121 7713.1079 4636.2148 5812.236 7582.659 13419.7025 10983.414 6129.1759 223961.5156 10699.3451 8248.2568 8151.3311 5847.1923 5847.1923 6687.9018 11529.1272 13597.5412 35338.4786 13439.829 11772.5246 5909.4191 6233.3068 11862.6259 19139.2433 24170.3215 11638.2105 13910.4737 5549.57 14443.3181 11100.1252 6098.1536 13164.1833 256858049 tfdb Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 10387.1175 7982.2196 6339.8197 21834.9064 12364.8661 3375.6303 4954.8463 7233.1984 11861.3821 10502.2204 163663.2334 9133.8445 7991.6384 33875.5112 13362.5223 13362.5223 6685.3242 26544.7219 10060.5289 131356.4559 13207.8125 45217.1515 5510.7143 6914.7111 16950.0336 11815.6352 22303.8533 10345.8216 17028.0381 6991.5525 13408.7239 10285.6261 6162.4668 20005.8685 59859756 EF1a_Stramenopiles Other Phylogenetic NA Cyclotella cryptica superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Stephanodiscaceae;genus:Cyclotella; 23490.097 12065.4812 7781.1306 3258.6912 2045.8042 5962.2481 11407.63 4220.3501 3577607.6133 13689.6664 9010.1321 2287.1047 2287.1047 3814.3719 13447.0067 38359.6745 14028.9281 9550.1765 9410.982 3131.3358 2835.7907 7534.0561 2979.2782 18288.8798 7151.0476 9575.0085 3773.2042 8489.8983 15373.5204 4361.8567 10973.0864 306495414 hzo Nitrogen Anammox NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 64329.9714 10944.3793 6975.066 6655.1874 9929.9194 3032.1857 7281.9711 2978.0841 8853.0528 10586.2621 6916.0488 161295.0761 13837.5039 8344.1588 4244.6022 23683.982 23683.982 6066.7907 23107.9109 8531.7138 8574.3018 12953.8483 9146.6603 5581.5754 5495.9089 16708.062 4156.9705 23491.33 12603.0591 18291.8855 6094.0754 7843.4901 9484.6891 6707.3844 17713.3309 260433188 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 36541.512 7106.0433 14077.3256 18120.3351 10984.0973 9229.9088 8010.824 10638.1379 26622.9637 5588.2791 219148.1993 10619.2752 11648.7517 11652.0685 9255.7984 9255.7984 10426.4338 14996.9138 11207.1744 19213.406 26320.0871 48380.1009 8148.2041 5629.5813 15195.9513 17234.183 29605.8226 15242.9082 113004.2736 8976.4833 12795.3599 12863.9854 7499.3216 16572.6652 288336259 xyla Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 28005.3223 47649.7981 12506.6615 21803.1398 20458.0654 16376.4381 11129.2094 17145.4605 17425.3981 1687174.3958 12344.2088 26253.1015 43718.4488 18248.4442 18248.4442 65071.4271 32506.1034 14753.3669 16401.1386 32924.5568 10364.9272 14529.9165 24437.1229 131469.5133 18293.1701 52901.6091 31616.8499 31373.8756 20285.2366 105348.0956 134128.3233 10164.594 12827.5916 307586208 amyA Carbon Cycling Carbon degradation Starch Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8788.0709 6041.4222 22027.2697 7523.8655 5953.4474 5666.408 11032.5918 15381.0798 17001.8693 94071.0552 3510.1951 11184.7013 3092.0778 3092.0778 12021.7682 5191.9685 5527.1736 37377.8236 2809.7207 2868.2899 7704.5043 6453.4006 22375.1003 17176.1939 8074.8296 5556.6242 7510.9342 4989.783 3714.4611 11250.4293 66130215 mnp Carbon Cycling Carbon degradation Lignin Pleurotus pulmonarius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 24107.2764 170754.0804 17605.7636 8887.7591 42657.6696 17711.8962 10339.5953 11982.3219 26113.9027 36408.1733 308777.4077 30070.961 16674.9799 40703.7361 21591.8103 21591.8103 48719.4403 41469.392 28025.4621 22896.8302 762156.5014 503803.4105 16722.9855 24261.3011 21051.4107 17155.7012 56630.0239 126238.0856 31825.7606 43576.2821 23713.6687 18756.979 80370.9562 50292.5712 223936929 xylanase Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 16827.3973 25888.9609 14895.6408 8267.0416 2146.3875 2466.3549 4778.4421 3981.3575 3236.4525 84306.4741 4072.8408 4156.1177 3286.3847 3286.3847 4241.3205 6834.3772 4376.1227 4821.1584 4855.5129 2488.4866 3005.4887 8975.2244 2409.2276 13410.6317 7078.4891 8802.48 2419.3442 4318.5847 4094.6355 2529.9853 4596.0523 365844112 amyA Carbon Cycling Carbon degradation Starch Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 4263.5233 6508.7829 16488.5552 3528.9926 2891.0822 5011.1298 6560.9193 3929.6487 6521.3653 4082.3465 10769.6825 2483.5199 2483.5199 44236.0922 3704.1936 7410.7171 4931.7325 3891.3183 1967.8496 18273.211 9884.4244 6034.9323 4828.7234 3016.4424 4750.2963 9973.1454 295397225 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 6413.3584 87065.4089 23698.3993 85572.7162 5372.2051 3022.4846 1569.4154 3642.0309 3491.5571 29320.2843 198251539 tehb Metal Homeostasis Tellurium Detoxification Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 5796.3615 4348.3005 2463.4427 5483.4011 3216.7611 5829.687 65684.7668 5743.3386 4584.0354 3701.2251 7417.5942 7749.4279 6807.6317 3200.7053 7053.8587 2182.7507 11533.1013 4733.7571 6364.9992 3063.7808 12585.7649 3472.5547 6283.03 91203274 glucoamylase Carbon Cycling Carbon degradation Starch Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 71094.6708 19971.2967 43326.7752 18785.6826 7302.4799 15560.4664 17082.6292 16739.6874 26049.1116 29372.2635 17496.4247 538420.7446 39833.5525 28645.5599 25451.2255 26180.752 26180.752 15698.2168 42826.6321 23081.3806 28412.6574 38375.804 33381.5016 14463.3855 16976.8498 36745.3798 12579.1902 58093.1752 19504.4858 42602.7189 12945.4327 21957.5891 19777.0358 16744.601 35058.8052 209401812 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21482.8087 4512.4867 10433.1739 10209.2704 23492.746 1120562.8198 5811.2491 7376.2222 6425.2439 21532.6996 21532.6996 6364.5118 11640.5222 6939.1089 6004.238 12838.2982 16655.1431 3139.4403 18337.5305 4721.2943 14895.8716 9072.7994 14556.3792 3418.0341 6371.7482 6216.0132 5385.3599 110823833 catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 24821.3243 4758705.0585 1507262.248 2245.1621 3541.0251 2218.6905 2218.6905 3604.1143 6209.6064 3682.6833 2315.9754 2625.2122 3233.6687 9739.7987 4510.2041 2128.3986 13666.2675 2349.6299 837249.4668 392402274 amyA Carbon Cycling Carbon degradation Starch Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 206619.4679 8100.6501 6214.2643 9604.8877 15377.0822 10628.2081 22080.5075 16371.7639 283467.5885 10689.6252 18258.8617 14615.5479 19395.8895 19395.8895 9427.4303 27369.4945 11080.0874 16430.95 90922.2297 13309.2241 8606.6911 14686.0936 16024.0779 21683.6826 65585.6691 18041.4129 13496.7686 14747.6838 9523.5494 14073.1562 19178.8812 32976.0036 365879472 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13830.8296 38956.468 34384.2593 34263.631 11260.7426 2218.1463 20850.1516 3603.2092 6748.2436 6763.9734 5349.7164 5907.7648 12682.1042 9983.434 26708.9236 12609.4183 12609.4183 4968.4121 18025.1224 9104.182 9315.1914 7280.0593 8174.1189 9846.8062 7933.2087 26580.6049 6926.772 27988.3423 17993.4147 59596.4361 9920.9208 9744.3664 11362.1062 5118.7306 5869.4008 289208048 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7401.6684 3128.046 8426.7911 2267.6911 5573.5207 115674.1728 17954.9264 2550.1274 5805.0393 2259.3647 9879.5951 2450.0763 156744239 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9400.1197 12603.9248 4192.9994 10512.394 5647.3715 6681.8255 7155.6409 28265.9118 207653.6219 4647.1535 6212.0382 7387.6604 4950.003 4950.003 4584.4814 9303.9255 5559.3068 3332.6441 16606.8885 9146.7111 8974.3567 14857.6247 10131.0346 11454.2171 5494.6815 7386.7473 9037.7725 2895.0214 165880041 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6542.6114 2083.0053 5623.3012 4757.1642 5712.3405 3182.6297 2149.7654 4896.6445 14639.1942 2073.156 5065.4181 326950797 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 7538.2421 9509.2375 6644.8525 7812.0093 3589.8733 3888.623 5945.1087 7577.3295 19182.5262 185853.1638 58527.3396 7874.7015 8288.9725 4808.2149 4808.2149 12544.364 10958.9382 7322.2139 4481.083 7764.3956 4930.6785 51825.2937 26297.8372 30721.8057 2964.4718 24231.572 9811.6519 9399.6652 8948.6457 4809.5014 8804.8653 9632.4206 10615.7343 254818817 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 31136.9967 33554.2613 21457.2372 10373.1604 6488.5844 22479.933 25500.425 24195.9248 49763.0682 60369.3731 39494.6594 344726.6919 29738.7928 23221.5953 926033.3439 16678.5281 16678.5281 75110.4576 43419.4563 34851.8385 22857.1096 34527.3013 39521.578 38160.2644 8460.394 34592.9521 45653.2736 64579.2069 40584.8253 95707.4219 17856.9006 23163.1211 19781.1389 17295.1556 165809.1618 355336209 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 19399.5631 8392.9935 14525.2466 18768.9405 8889.5357 8756.2908 5720.604 13755.5095 15979.4945 7599.0453 258458.9584 14377.0585 15123.1083 8593.7779 6649.8627 6649.8627 12511.1069 17987.9189 11437.2686 158829.5082 29701.7574 87042.2349 9920.3192 8056.3519 17910.8123 7943.462 35493.3973 11204.9657 15673.1601 10568.1155 13887.2714 12164.9737 8892.1256 25707.62 110281479 amyA Carbon Cycling Carbon degradation Starch Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 13328.8648 7947.0631 5910.6472 18927.2891 8173.1448 5544.4447 6208.7915 10165.4679 10247.1995 8466.5983 203678.7127 10695.0177 10686.1301 14512.3076 7534.8335 7534.8335 5635.3251 23904.236 9206.1849 13526.5279 14008.043 12248.0821 13079.9609 5729.289 12816.8931 9326.5997 29547.2058 5945.288 12334.038 68524.2071 8749.7985 9509.2802 8129.388 14435.0419 50541861 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4767.5312 6572.9307 2798.9156 4535.6166 2638.3267 6035.7908 8685.7877 4554.1153 89406.0968 6135.2729 7167.9145 3854.7386 3854.7386 4408.067 12451.7934 6021.8505 3683.4168 13464.7327 6504.9517 4698.3716 5765.7773 10886.3694 7528.1498 17996.2441 7304.3979 8651.9666 3746.6795 8365.2829 9851.1991 4722.2903 9437.4484 148829422 arsc Metal Homeostasis Arsenic Detoxification Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 49758.2591 13250.3264 20809.162 40339.3903 32414.7186 8400.9065 53096.4382 20950.3975 48490.3337 21479.2848 30948.3195 34697.6985 531860.0424 35724.2353 35953.726 21646.9819 50950.8898 50950.8898 23850.4936 41765.8549 35969.4561 34585.3312 58687.2997 52628.0047 36297.9751 27172.5109 91747.74 62445.7691 91512.4688 25960.8915 59334.2084 16790.8105 20686.4989 21984.4854 15167.7712 38847.2402 209546214 mer Metal Homeostasis Mercury Detoxification Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5320.2983 203327.1284 71149.8435 6143.4847 3451.4327 12279.5529 4743.1199 20532.1818 6794.398 11944.1087 5976.9166 4595.7272 13022.8859 5325.8315 1931.4655 3902.7006 2511.8555 119482956 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 21225.9761 11928.9679 16489.2388 22568.7686 29294.8987 6539.1816 18621.4916 16760.3431 13282.8345 20577.4936 21806.7628 11831.5804 595387.0833 21383.2441 20981.6807 16589.7679 10206.5093 10206.5093 89180.5907 35119.1331 23991.2951 54282.186 28388.3159 42211.3905 15460.9103 12613.1268 25813.2335 41528.5391 54516.4933 14952.9535 28889.5921 10866.6881 20285.86 18171.3124 12962.9728 36716.2245 227843089 ppk Phosphorus Polyphosphate synthesis NA Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 5975.4319 130309.8267 44976.6813 4239.6389 9202.8217 3230.6533 5856.0392 5648.4738 3964.9246 109368.7783 3706.4277 4064.5394 6117.0775 5452.3214 5452.3214 5603.0029 8445.6099 62011.8218 5972.9052 103064.6173 2280.6221 3849.6619 8439.8761 2791.7683 23700.3709 6639.2851 12951.2521 3097.2179 4584.253 4389.8319 9054.0041 6277.0456 403401054 nitrilase Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 11830.7539 14047.2407 12759.8637 46711.1441 22728.7677 4992.2226 14657.2277 131760.9144 8944.871 11049.2637 11532.2253 428322.8594 19637.9164 14343.1281 27811.0673 12344.9044 12344.9044 7907.8612 25323.8363 26804.1752 4673.9168 34184.1252 9463.8999 3926.9802 16366.6671 30869.2667 7563.4064 62749.9216 21278.9678 37653.9807 66174.4081 14266.3124 7604.3015 6393.4129 9794.5823 85713564 cysJ Sulfur Reduction NA Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 146138.7261 41001.286 119456.3644 69244.5202 134003.7344 178292.1975 45163.7427 78163.8251 38533.502 490353.3298 74420.4273 60493.642 1515718.1451 87215.1577 107471.0454 154331.7367 164660.9456 164660.9456 69690.7628 95287.5949 43963.2547 58593.3835 116529.6028 56326.3369 44117.342 95327.767 119067.7033 302067.6821 142180.1922 78606.3979 99057.7724 54334.3152 71036.5613 69045.3492 34719.7653 70862.5895 339503753 dmdA Sulfur DMSP degradation NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 87668.9107 12900.9248 18610.1878 57280.3786 46753.9821 13925.5235 88132.3017 145191.0644 21451.1239 41402.6806 27408.93 60377.4026 609857.4222 30059.4974 52817.3451 40559.8273 32248.1185 32248.1185 66405.0121 53458.7713 35429.9024 20728.6477 72388.3518 124608.1627 22852.519 27816.4986 38070.2062 32988.7244 75397.8276 138019.2267 47390.1695 73352.4282 31005.0314 76888.9682 15421.7118 66068.1074 374846110 bphd Organic Remediation Aromatics Polycyclic aromatics Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 5769.9392 20097.0112 29424.4689 5524.3512 2458.1688 4113.7164 3525.0183 2213.2876 115469.7519 14036.3354 7751.5945 10511.642 5034.2507 5034.2507 2865.907 6416.177 4769.3047 3513.2988 8292.9859 4861.9197 6486.991 3885.2004 11359.9278 7677.8295 14423.4285 6095.8592 20072.746 3847.7799 12676.2544 5790.9191 2402.4892 8082.1156 331003930 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae oral taxon 107 str. F0167 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 4731.7836 2908.8572 3763.208 4822.9184 73184.3018 3696.953 8476.2765 4535.8099 4752.7723 4625.4759 3424.1174 3459.3945 6552.5118 2777.7976 4806.8481 5555.701 1948.3334 2883.1863 3844.276 7112.3582 150036080 soxY Sulfur Sulfur Oxidation NA Beggiatoa alba superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 7084.1226 6870.4158 20517.3746 2149.5624 2315.3215 18901.9697 4817.2321 6504.7853 2550.1013 3129.1694 8987.1348 3820.5249 4716.1826 7884.648 5426.3529 8135.6888 16536.4517 2182.0736 3566.2415 9302.7553 2128.7329 11709.225 5939.2455 7734.7968 3070.0431 5267.1591 3910.1561 3342.0667 8180.3189 159472825 gdh Nitrogen Ammonification NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 20690.9857 541597.9546 144274.2179 10299.2309 32376.5114 4908.9407 8354.9585 24183.0347 21856.8335 12213.763 53529.1484 11652.5932 151418.653 11856.528 132703.435 17114.4324 7901.2072 7901.2072 9419.3839 22089.5676 9593.4715 10416.4507 30809.0123 8983.7311 14761.0519 10237.3805 23463.2869 41878.1298 31392.742 41933.166 30047.9231 99819.7046 17489.3354 23836 28821.0038 29972.3886 297163098 catechol Organic Remediation Aromatics Other aromatics Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 259388.1022 7295.6181 6795.166 7831.3197 3597.3825 2321.6472 4318.6108 8147.8936 3142.0445 124378.0381 5802.4528 8542.4163 6750.7607 4916.1355 4916.1355 8749.33 11505.7927 5409.3954 4923.3919 7028.2941 8413.6996 4033.413 7074.3786 8881.4844 3970.7123 13464.5845 10623.0214 7002.4059 7463.0769 5887.1359 12714.7385 4074.0186 7139.8672 313505760 chitinase Carbon Cycling Carbon degradation Chitin uncultured microorganism 31074.3116 512747.2772 101047.5726 32871.6118 8252.5745 12753.5201 25271.9039 9297.6302 22516.371 24540.9604 22016.246 466263.0548 213594.1764 46972.1367 20106.5403 30699.4274 30699.4274 19020.4852 30878.2405 25984.6732 30006.2188 37139.9628 46653.8641 38488.1614 22292.3214 26384.4746 15031.3294 49316.9031 43405.0822 71390.7187 10820.7084 31837.0131 55716.3874 9998.5968 31349.0328 310791430 cutinase Carbon Cycling Carbon degradation Cutin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 5206.552 4213.4778 72283.6239 6126.7678 2556.1256 3115.384 5370.212 2838.245 93061.8832 7810.4583 12452.2028 10289.5258 6999.613 6999.613 5557.8701 14498.9909 15338.8819 2218.1037 5492.1574 20889.2174 2099.7554 15715.3919 8276.7059 16026.3189 5000.7224 10491.8782 7715.9598 163698273 vana Carbon Cycling Carbon degradation Vanillin/Lignin Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 84093.4196 13980.3341 60495.1684 68142.0183 39946.5456 21209.5037 49299.8659 34688.1279 40926.1502 34854.1574 56109.1648 39111.442 1139937.1606 58918.3895 52916.1187 345732.3586 25209.9865 25209.9865 37161.3337 61824.3834 59702.9374 49466.3865 92890.6247 435057.0303 34905.1483 43293.028 57331.7236 33494.8889 136286.7925 66309.8827 68166.0425 41479.3741 46750.1452 63069.4254 29838.4012 88678.1305 134142929 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 18479.4732 8170.3027 14274.7914 49062.5828 13601.1504 11163.0078 3454.8484 10686.5621 15135.151 14831.8673 189746.2661 18131.834 15987.1712 23523.4372 9793.7503 9793.7503 8292.1234 31599.1758 16966.5399 14036.0447 24566.5391 15276.0707 8721.6134 9866.7499 23280.6809 9742.7637 30347.5165 22233.9382 24194.1528 15347.2963 12144.153 53568.2324 66912.0182 23291.0712 28629801 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 107528.7042 85016.0528 18311.313 22976.4027 9578.1836 34757.5205 28183.0913 24083.1572 18424.7957 27735.5428 18746.2153 635284.2868 93485.3412 36567.5263 22756.7844 30905.807 30905.807 13059.5912 52908.9873 31935.5131 36651.3539 402849.6908 19344.7534 40711.6638 27050.0119 30698.506 40136.7694 88326.8449 27699.4638 33842.2602 13997.8347 23624.6609 37276.7071 30294.1287 19270.5627 68446139 cysJ Sulfur Reduction NA Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 12157.9189 6571.2729 7276.2891 16211.3188 6491.812 8214.2754 4199.6037 35126.8895 33405.7539 21695.4613 254532.6888 9842.9893 24510.1426 8910.5258 4063.8925 4063.8925 5634.7702 13644.0785 11181.1243 14301.7501 10780.1593 16379.4084 6495.0726 4300.8642 13778.6457 5272.4781 20786.2928 8379.7004 14147.1373 6693.2473 9157.1561 7132.3232 7632.571 18149.9996 20278787 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9026.3921 4819.0987 7984.9905 4454.0792 2842.9013 4027.2229 38610.967 4196.6376 98196.7004 7748.0576 7426.9842 2622.3343 2622.3343 2967.6489 8568.7449 7326.0728 10309.7673 10696.8239 9657.9441 16088.5668 16324.989 15011.4494 3173.0031 13135.7773 11524.5032 10739.0133 4376.4311 6559.1703 6412.156 3848.0795 6560.949 144898530 TIM Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 13241.0819 13060.1039 4434.7853 8120.2187 3028.9255 4573.9322 7790.8299 6912.9125 4780.5583 4634.973 5522.4611 21611.4624 2453.2789 2453.2789 9347.0132 13156.6373 4449.8127 14505.5449 6154.924 6424.611 4102.9257 5638.9645 5625.1893 15204.8552 6859.5761 9644.0543 3839.3125 5472.1521 8421.1845 3395.9432 4699.4256 219935498 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas viridiflava superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8056.4183 13376.7028 4329.179 3805.1754 86866.5594 16267.708 7664.5202 5333.0622 14175.7809 4129.9207 8236.8949 2663.6706 6537.9731 4161.7832 14611.4599 4778.9348 4963.2425 2338.603 7963.9109 16114.8801 3647.0304 66846793 oxdb Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 6935.783 4992.2005 4835.6325 3543.4645 8039.1404 5807.4582 2068.21 2068.21 9106.0389 413507.8185 6619.5369 2441.8516 2148.6863 5841.716 3164.9837 10286.3281 6548.037 2112.3504 5043.8139 28991.7445 18713.0948 385867002 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 13479.8207 5495.4443 12402.6615 12512.0677 7959.2202 6910.4951 9703.1811 4804.044 29324.4007 8096.4186 5036.9755 161822.3432 9035.1815 7344.617 8640.4886 4324.3448 4324.3448 8326.3539 12515.0282 8999.7635 9058.995 10151.488 11544.0084 6108.2995 4573.2183 15609.0562 7705.6978 20273.9235 17531.3859 14464.5609 6521.8425 11435.0564 7883.2783 5214.0743 11183.2341 260616529 bphb Organic Remediation Aromatics Polycyclic aromatics Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 11044.1693 7035.6686 9603.5517 9273.5058 16166.099 5766.7531 9542.133 4140.303 7504.2161 6916.1779 4086.3831 178133.3053 8865.5539 8185.4848 8082.9478 3003.3613 3003.3613 6181.0869 13444.2661 10570.2403 37330.9175 10402.0699 10235.3804 4031.7363 5217.4011 16291.9105 4563.9451 16850.0409 10166.8476 13628.371 6330.8552 6685.1766 7585.0782 5680.6199 12647.5041 254029798 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 19886.6994 31140.6698 281591.1411 6818.4881 20538.8044 24691.2258 9872.3583 64308.9636 17387.5921 48747.9633 552591.3232 28444.5531 13823.6143 27691.7952 9848.5836 9848.5836 54066.9388 28717.677 12861.4735 12573.0598 13228.5488 42860.1958 14971.6444 9690.2609 27052.5714 47575.3744 97905.6986 13205.013 22032.4575 28718.6006 14076.6663 21259.1163 77582.5775 61336.6456 383452553 alkh Organic Remediation Other Hydrocarbons NA Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 64120.7726 19995.6937 5566.2228 11839.6727 60861.5712 9453.6624 49683.4724 14678.6773 4704.3051 9858.03 22839.1947 12612.3731 146292.2642 19909.1056 15452.1652 10776.9394 14171.9503 14171.9503 3795.4259 16516.8245 100304.8937 27662.4525 14418.2424 8805.411 5402.1136 7776.3761 28222.8319 32301.1831 38421.8469 21805.1816 17185.4304 14171.593 13536.6303 10683.5403 11935.1136 36878.4206 400387871 bphd Organic Remediation Aromatics Polycyclic aromatics Acinetobacter baumannii Naval-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 5471.61 3323.9974 2328.2672 3393.6486 5581.1697 2536.7078 127459.2837 6006.9129 2395.7686 2395.7686 7881.8421 3830.2971 5025.5379 4887.3692 6197.8854 11326.0167 4480.4322 7470.8032 1901.3399 4602.8401 3310.7728 2189.6213 5205.8234 163747641 tktA Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8352.1709 58306.8938 20005.2198 5438.4984 130056.4541 4890.8581 2731.9581 2731.9581 5044.5882 2365.8254 2777.9025 94471237 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 116054.7476 15306.7754 12638.8529 9576.0907 5890.4345 13926.4218 17619.2059 43581.4739 14671.2864 49351.6717 25854.1234 356884.6824 29410.5086 39151.2899 36591.8851 9924.7916 9924.7916 56852.7156 29271.7716 35820.1939 41663.7897 29005.3358 35596.8597 16328.0204 26724.1124 26202.5295 21587.8839 58872.9003 50621.9182 36614.4867 9313.0462 22635.5206 22465.0156 18606.4091 40788.3789 148254171 hbh Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11459.4799 4319.4533 325478.8325 2669.443 4869.383 4250.9796 6826.7461 9246.4799 88061.2159 6162.9928 5507.1188 4379.7373 3798.8888 3798.8888 9997.2048 4771.1447 3536.2168 8684.7115 6325.4564 5093.8409 5738.765 8955.4288 2273.9194 12062.5703 13046.9614 10536.9987 7787.819 6043.6425 5274.7896 2567.2761 7742.136 3157534 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 8956.7426 13167.342 3204.7646 6922.859 5411.9859 19055.3526 4237.5725 4237.5725 10112.8804 6465.5814 7809.4012 4866.9793 3785.2326 4525.0296 8842.2406 6284.527 24248.2039 9029.9747 6220.8263 4606.718 2950.2856 6514.3332 355534787 ara Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 11163.2585 1973.3266 84205.4428 5176.6551 2647.8757 6426.1914 5203.3305 2719.5853 5191.3035 1958.6138 8882.5913 4139.9253 6927.0362 2145.9534 3721.8252 3544.4427 2230.2703 222149814 xyla Carbon Cycling Carbon degradation Hemicellulose Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 31446.4825 12549.6428 16979.142 23437.5693 6440.8513 33377.7993 34604.2571 47810.9628 51671.8228 19987.3983 29831.1677 2683188.7651 15061.8281 42807.8843 88824.0703 17829.2986 17829.2986 15125.6342 44556.8641 69949.8529 24598.9248 51302.4249 46765.3483 181703.9802 15850.4803 24787.5451 14398.1931 120053.9669 16651.5673 20474.2636 13757.7697 24575.274 41342.2157 20148.6086 29123.997 163746718 soxY Sulfur Sulfur Oxidation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7188.8719 9588.001 9146.7157 4048.6844 7194.0488 185833.4127 42007.6216 98041.4942 764276.3546 157598.6314 44898.566 60078.1225 39940.8409 39940.8409 7032.8099 12953.5996 5453.6611 3983.116 9338.5668 6787.2281 2362.8845 4092.4579 6946.0097 3185.9873 14454.8364 5871.8319 25204.079 5209.1817 6386.5621 15093.8501 13136.7406 7633.4723 237747456 arylest Organic Remediation Aromatics Other aromatics Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 7133.7529 69999.9262 17540.0903 5942.264 186083.9546 14509.6975 24019.6679 10539.8673 16008.5674 9651.5824 156975.8999 7041.2117 306407.6017 7351.2783 5895.0108 5895.0108 4153.1271 11635.4826 8388.4745 6422.4016 50921.373 4289.0768 13032.3328 4282.6426 13075.3895 10435.2688 10298.9838 8046.2015 3482.8885 13247.5857 2849.3285 10423.1333 117188459 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 22844.7535 90788.0365 296847955 cutinase Carbon Cycling Carbon degradation Cutin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 15439.3724 6071.1934 16941.5206 9021.7629 2883.208 2061.8364 4924.5848 111793.6461 4017.6966 6124.7674 3914.7654 3914.7654 3358.9833 5841.9256 4063.4988 4653.2921 2600.9434 3140.3227 7416.9655 5628.2392 24206.5418 6005.7536 8480.4808 3369.1147 3226.3116 4484.0278 2664.193 146195669 bphc Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4559.0859 5372.716 6016.0084 3568.7763 3568.7763 7037.2836 8362.1206 6170.5431 5528.6503 6270.468 6212.7105 10523.7858 2317.8794 11022.9089 8567.938 5413.9304 2980.2501 4279.9594 4137.0153 2887.4994 12278.3016 308755290 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 23180.5146 7704.5198 64984.1735 44298.1323 16549.7527 16149.5726 21412.2549 20354.2586 28219.1962 96697.1743 24976.8518 460663.5686 20210.9958 578745.7753 95773.8593 20128.453 20128.453 24397.3598 27483.8106 21086.3665 18742.1905 44795.05 27338.9078 10379.3896 25169.1486 30872.2295 16708.8014 68085.6099 37304.3486 34910.8223 16538.5226 25028.2634 10093.3505 9051.1138 49702.0245 338821542 alginase Carbon Cycling Carbon degradation Alginate Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 12218.4071 34796.3084 34286.4838 6253.1657 16789.1985 1992.611 3904.6529 20361.146 3270.0563 348852.6669 2807.0048 108899.7819 24203.1564 8470.854 3349.6112 3349.6112 3424.9833 8866.7999 4667.9424 7357.5475 14103.5906 4440.8207 2878.868 6515.7181 2360.5575 9856.7452 6192.116 6012.3731 2190.7773 4738.1133 3803.4164 3570.7823 9639.8453 238696602 amyA Carbon Cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 79090.607 19231.6972 47014.7772 34606.8426 59053.5589 12873.4457 32220.5709 50662.7717 46338.1859 41907.3407 46372.939 72460.7795 699488.9123 47576.2915 40469.6395 55235.7437 50103.4308 50103.4308 66943.2016 70774.1288 29800.7824 39578.0594 58556.8592 34887.0903 24710.4712 38875.4157 56951.1462 24973.323 687784.3221 37060.0642 53892.2474 15149.9434 43721.8471 34943.7584 214219.3092 60557.2638 340521563 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma reesei QM6a superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 38454.8442 5952.1299 5263.7726 4512.6489 5102.2633 16828.6544 9397.4115 8752.7878 22375.6411 16442.576 218663.9002 13338.1571 15002.3621 22999.0415 8074.4213 8074.4213 9099.4136 56042.699 20015.3072 14299.7385 50680.1883 21508.9954 23695.8252 18457.4975 16589.0328 15468.3588 29658.7229 20688.9496 15876.2411 13776.1958 23031.8628 12316.6956 9667.544 20241.7251 307217221 cysI Sulfur Other NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 594934.6485 23823.3281 381659.4133 879829.0647 585797.0323 264167.173 194781.5563 465816.4465 525563.6704 350152.7705 492475.3421 379576.4417 11601179.9655 553053.1192 440836.6257 697965.8084 498173.5128 498173.5128 444055.7053 484949.1161 366520.3517 348540.3569 546934.2379 578105.7684 428516.4342 338498.9615 408106.8082 304960.7719 912565.5363 363766.5545 579252.8319 165275.7135 300712.4449 400993.8397 234793.0405 523026.9633 91787940 tfth Organic Remediation Aromatics Chlorinated aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 67680.637 28606.6089 103222.1963 46528.829 42142.1172 38914.9323 99915.2931 105198.5059 47751.2046 75684.9472 101794.0839 67182.435 1174880.1836 82639.5117 80859.9825 92149.76 66778.1969 66778.1969 62309.6029 92753.2384 57873.5816 70855.7532 77149.7218 297148.2539 52892.8182 48570.0207 146027.0826 121913.3039 186235.9013 105951.3422 143317.9888 69743.8242 150156.4875 117625.8007 54831.6337 93867.1262 325530964 arsc Metal Homeostasis Arsenic Detoxification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 6827.6656 5457.6529 5293.2829 3448.0962 2713.047 4691.5746 6385.2072 19477.492 2914.3054 74789.9364 6218.2954 6526.5411 3939.2382 2014.2159 2014.2159 2571.418 13804.3555 6377.0253 6117.5349 6514.8967 7551.0085 4039.952 3518.3919 6239.3516 42874.896 12782.1714 4821.3128 7081.3272 3463.0557 4524.4641 7004.0408 4183.3956 8970.3175 290571646 nitro Organic Remediation Others NA Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 11150.8589 25724.1555 5662.8394 4404.1044 11768.2197 7058.8917 13404.4349 7974.1914 112140.5335 409359.1543 16899.6662 16758.4001 11657.9082 26870.2593 26870.2593 5177.389 47452.0125 6037.4338 15215.7358 22581.3047 14742.1217 12941.0277 9676.169 16228.9654 15231.9723 37239.4448 18197.3508 18282.9011 5149.6202 47000.9067 26550.5902 5704.4374 14989.145 296020822 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 131539.4116 53614.0243 46778.1636 65672.2258 13929.6713 72806.9056 126625.9612 32676.3406 49300.0058 92577.3222 73969.7468 848133.2047 68874.5446 72093.7177 183002.5914 161299.4087 161299.4087 59295.3565 97030.226 76467.2764 85037.0271 222560.6716 124660.1796 51153.65 60982.5821 108105.0977 60697.7543 214371.6243 62744.2381 106474.7965 54506.2254 176574.3793 110706.1776 63235.2596 580482.6464 342316506 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 16336.4687 5214.7491 23846.6087 5658.5967 11205.8117 100935.7068 5374.5475 7249.7729 11578.5534 4130.3988 193977.2431 12343.3933 9901.3038 9628.3671 6868.1741 6868.1741 29178.9761 25957.8006 6038.5823 10099.3607 13115.6995 6688.7649 4911.4907 8154.2764 10857.3253 9484.8872 22386.5936 10008.853 15911.2154 5715.3251 6036.6899 5624.2545 10197.5777 9807.1847 288345679 poba Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9546.0355 13797.4541 4706.8495 2680.2153 2298.2506 25660.5354 7157.0093 13017.5751 24589.0571 6257.2629 8906.0493 8906.0493 3406.0308 13456.768 6896.4099 10897.0571 6998.8795 5702.737 11996.8663 5014.6012 31771.5039 10448.6116 80294.6095 3807.8198 10611.8333 9370.4898 3184.3166 5613.5427 114537112 nifh Nitrogen Nitrogen fixation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 153186.5872 20677.8802 117375.3066 20459.6725 82013.3522 14088.6463 27186.2137 42281.998 20719.1183 28810.3803 44634.5437 19666.1871 1106945.5038 39084.17 73236.0467 26109.3617 33350.1935 33350.1935 53074.5044 68182.7413 48892.3466 44738.7751 62719.1754 40010.6792 89825.6485 35553.849 101610.4517 39333.641 606504.4805 56380.9691 56576.2445 27189.5209 33097.7531 31540.7739 32312.3383 55696.9969 146283160 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 5990.1921 3231.7225 3971.3773 1883.1234 3228.7932 402251258 b_lactamase Virulence Antibiotic resistance Degradation Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 5463.7369 5520.315 4750.2465 18331.1362 5909.6111 3089.8085 2618.939 5253.1289 7701.7079 3985.1371 162606.6974 12451.3737 12576.899 7988.2506 7011.8267 7011.8267 4276.5784 12839.596 7942.4508 5933.2622 6833.1995 4229.4465 4021.9298 4936.6184 10742.4607 2726.0832 15417.7581 11093.0875 13203.0248 3788.3587 5063.5461 6956.7002 3524.1731 7924.339 400386002 pcpe Organic Remediation Herbicides related compound NA Acinetobacter baumannii Naval-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 13692.345 5855.8816 15815.0294 15774.1308 12311.6874 5302.029 14707.437 17366.0661 14260.7399 302448.0903 17135.6706 20792.1597 9828.8108 9111.6317 9111.6317 11467.1253 28245.0927 12879.1759 18038.5341 21303.683 18311.2172 8576.0225 7974.4606 23196.9833 9907.1865 37813.1855 13908.6883 24490.7877 8629.2771 10254.3061 14370.324 9995.0111 26402.9923 297148264 cysJ Sulfur Reduction NA Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 301444.7529 16943.2611 76931.5468 25408.3561 93816.7356 9300.5434 41505.5671 40650.0038 34313.7653 48832.6236 37281.3706 337553.4141 55309.7598 76057.3255 201710.1596 32429.8045 32429.8045 27557.8152 73891.2497 31163.0884 46481.3762 205436.6334 33559.8702 38299.9802 48678.8998 49629.896 29425.0897 97236.7434 49599.4792 52900.1494 58999.6232 83266.4169 75323.7027 125084.7051 51369.1683 219858669 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 3870.5473 7886.4899 17302.6898 7225.7744 36694.4614 3660.2131 5199.0609 239587701 cellobiase Carbon Cycling Carbon degradation Cellulose Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 6040.1677 6192.3145 2221.6668 4546.4518 2757.4542 5523.5745 7162.5715 3793.859 157628.3664 7573.6264 5543.0264 7630.224 3776.1271 3776.1271 4654.9856 8093.4249 5277.4263 6098.9787 5707.8032 10568.1196 2763.1452 4055.7095 8888.1699 2262.1441 7666.936 3134.3916 3630.0577 4388.0303 8717.1538 7812.8614 328929435 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 5186.506 13466.7075 4403.9819 15251.0348 17026.5057 2405.1486 3547.5061 5547.9076 98246.2667 8722.0494 5291.2532 4143.577 4143.577 3290.279 7499.6844 4571.9459 4715.9825 4903.6934 10548.5655 5127.7972 6678.4898 1761.3208 3493.6175 3405.6675 86751473 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 109406.8536 42668.3477 41704.018 50861.4422 19837.659 74505.9606 108308.5078 27904.1279 47328.6716 77855.9471 59059.7121 991471.1308 39147.9484 137779.6308 110454.1639 52537.1309 52537.1309 27804.657 108666.1652 48555.655 63348.4035 114480.406 39342.8275 27897.6431 25801.7482 49011.7845 79172.6488 161138.4022 73554.7372 84098.4158 34386.84 94585.0324 78569.8521 38456.5739 63614.1167 148254805 mer Metal Homeostasis Mercury Detoxification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10166.436 142983.194 4420.0876 2204.4917 4804.5849 6041.2587 2908.1205 563523.9241 4411.3139 10789.4826 5965.6415 5965.6415 3163.6363 7645.5481 4187.1546 8363.1087 4080.167 6218.9459 3113.7742 13302.3317 12510.6997 4937.6932 5235.8056 2236.1189 5209.2799 3192.0949 2842.5862 4544.9196 28971836 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 19159.0458 4815.8328 8890.3021 3616.383 6776.2369 4737.5333 3314.543 79543.6602 12682.7063 8137.9769 6778.3616 10695.6219 10695.6219 7839.1237 9602.4295 7672.4829 7390.1124 4980.1786 4529.2976 4214.651 46653.8774 2527.3401 37215.6514 6814.3443 9654.7374 1972.9254 4884.3657 5913.9898 3172.1964 24154.1928 261338438 ppk Phosphorus Polyphosphate synthesis NA Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 56114.1109 46096.0923 46757.1559 11504.8408 20439.7571 6732.7795 10315.8558 20199.2993 49801.5038 16210.5517 16856.5799 20019.6726 221722.431 18411.0401 12921.5901 14413.5669 14777.5595 14777.5595 11341.2163 39700.7521 19224.0981 15150.6683 30610.6027 17718.8724 11982.0436 9344.685 22161.9245 20442.5421 56651.7436 17270.3563 22007.815 15918.2325 14817.1824 10680.1949 29990.0526 42135.3829 17863089 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. 5SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8509.2323 26400.1403 8373.5964 10053.567 2914.8934 34503.0175 5447.5726 110758.7739 13558.9875 8497.9258 3206.78605 3206.78605 3171.93595 12427.1429 5400.4271 7411.8248 8073.72505 5561.4908 3371.345 2966.7651 8972.36705 5529.31555 10645.5089 7265.56105 3012.0155 5348.15795 5033.0745 3422.76685 10694.6683 120405368 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 6049.1923 4218.7447 5683.2657 2926.0353 2199.3243 4831.8526 3545.0265 4733.4196 68211.2256 8176.7207 6219.5887 11636.9728 4967.8995 4967.8995 12622.4069 12570.5728 5007.9043 4848.1687 5547.4185 7307.105 3695.6302 4329.3983 7347.1517 2999.8612 21055.3069 10299.4541 8874.7506 2395.2984 4728.5254 5439.4588 9820.7297 9351.5345 121528959 chnb Organic Remediation Other Hydrocarbons NA Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 7031.0569 6493.6108 35486.0941 9874.1942 2650.098 9898.5989 10626.1511 15470.656 19324.0705 22096.9352 310500.7005 5274.5296 14176.3932 31892.0239 10717.8667 10717.8667 2722.3157 27473.329 8221.7184 12794.1818 15777.1017 5334.7505 6196.359 7867.3588 8088.7184 13007.3027 22427.6499 25577.9726 18824.2269 5628.6536 32921.0941 27570.422 5142.9432 5430.7262 389742511 badh Organic Remediation Aromatics Other aromatics Stereum hirsutum FP-91666 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Stereaceae;genus:Stereum;species:Stereum hirsutum; 12749.3328 13658.32 26391.1524 87560.8627 8753.8969 6174.9156 12061.3212 2658.9882 8719.2094 12557.9441 9424.7235 289976.8261 13662.0148 16475.8866 57794.3044 16422.6311 16422.6311 24287.0213 11485.2411 26438.0011 5036.5949 9822.9307 7851.1975 4958.5532 13509.3813 21199.2466 4837.7022 20891.0989 17798.5987 18910.6955 8722.336 9459.7485 11519.5892 4691.9806 10266.4172 379064403 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 32360.3268 287083.5044 17895.7624 19658.5865 9582.7183 3740.6316 10820.5514 4651.8998 15680.8518 7071.5121 9252.5138 128007.2023 10967.6381 16664.2989 11428.2672 24561.9903 24561.9903 56725.9123 18435.7985 9133.0613 39736.2346 24986.6643 30215.45 4306.35 7880.7826 11188.488 6902.4543 12251.914 9421.0286 14470.4673 5574.8426 17430.7149 102151.2787 4089.7556 12293.2532 170690598 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 5969.8046 5951.2406 3482.6866 3879.9833 7682.168 2514.4711 86609.6481 12194.0185 5762.6921 5412.8771 5412.8771 8899.0359 8327.9086 4385.9453 2433.7278 5340.1189 3527.4311 2725.4501 13393.4651 345873279 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 6669.3279 7314.2039 3700.222 57982.4959 14530.383 14530.383 6569.1646 3937.4729 4844.5664 42119.4314 2781.7069 6263.783 4480.4977 7699.8463 3728.9239 2995.9054 2682.7679 238592280 p450aro Organic Remediation Aromatics polycyclic aromatics Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 10197.9354 4818.0346 6882.019 107562.4906 21709.658 3524.9942 42211.0516 21723.4241 9277.9191 9573.6887 272558.5736 35674.1674 13940.9156 10910.4536 359999.5381 359999.5381 4769.827 17164.1654 7549.3807 34996.534 16063.1771 26483.7618 7140.4974 132246.6261 9085.0894 55047.8776 23136.361 8835.7169 9262.9594 5585.8985 12341.7208 15025.729 12701.5422 16976.0353 386379987 cysJ Sulfur Reduction NA Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 7570.8206 136836.7793 11296.384 6133.2854 105107.4013 4253.9864 19568.0518 89242.0017 89242.0017 6653.338 3964.0128 11070.7131 5322.6334 5613.1879 2820.1152 5706.486 5252.3183 12446.5684 5185.1521 25222.9209 4124.0356 4330.4138 16754.7579 283484365 glucoamylase Carbon Cycling Carbon degradation Starch Marssonina brunnea f. sp. 'multigermtubi' superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 16291.1036 14416.6479 10664.742 17660.9336 25329.6276 15598.0234 19996.973 163637.6556 73980.28 57865.0127 17340.3724 433792.0956 25495.4624 23803.9307 19913.6852 19903.0925 19903.0925 15684.5245 35878.1546 18249.845 18746.362 42494.7729 21933.3159 51147.757 19371.4878 19953.402 46428.4747 88306.1003 14815.2547 44813.3194 58844.3357 19619.2225 50548.3748 12936.9255 45137.8516 323319495 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 52683.5437 12010.2474 162364.1982 38775.6731 30176.1198 40274.1152 38211.3298 70229.9428 33677.3066 31124.4623 82777.1943 56670.5052 1047279.0922 63727.1033 150547.6365 157059.3865 51139.0731 51139.0731 40090.6178 66580.5805 55921.2495 71950.6401 59187.9422 65934.8721 59992.6218 55216.1725 98744.8467 46289.5069 165205.6898 54550.7909 323675.2549 30250.6103 73745.8447 84107.1178 57347.897 280641.6411 154489166 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 6957.4409 2936.6723 5268.0124 2833.5166 76150.8592 21374.927 4627.486 4627.486 5891.7509 6300.0418 4872.2233 4267.4429 15291.4746 4709.9954 3674.1412 6847.0928 17599.5632 7362.9766 2606.3926 4598.8348 5767.3841 2578.2715 375100648 dmdA Sulfur DMSP degradation NA Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 4712.9752 2090.9492 4076.0793 3809.8549 3085.6957 73199.6343 4451.6185 3777.3648 5056.4975 4661.4379 8232.7092 4498.3111 3028.1578 8462.6311 2544.0765 10249.3876 6523.1571 7646.016 2251.9077 3263.5042 5293.3045 2995.6455 6128.618 126734021 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11066.1053 7902.6997 15126.4833 12938.9704 13833.9662 10147.2646 7141.2304 13777.9318 12747.3296 7438.9681 364309.8227 18580.1521 18579.3124 17064.9648 8057.3425 8057.3425 10479.1039 20232.5859 16924.1157 17531.7397 18418.2838 17973.0075 6424.0151 9549.9674 22640.2427 7841.0737 27893.8507 17207.276 22285.6695 7608.1023 9528.7272 12429.7944 7695.5056 21382.8333 255920267 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 4224.6204 12494.273 2287.178 2707.6293 14552.8349 79234.5501 7858.123 2819.5166 2819.5166 6044.8109 24953.8977 4713.3506 2494.4558 116634799 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9186.9457 14553.633 13095.0726 8181.9819 40585.768 3639.0205 4384.9614 13186.4023 5369.1238 345679.7795 22932.7087 9485.0128 5855.7616 5855.7616 3925.0812 12440.2648 9451.0201 34877.294 9131.0431 8263.2175 30813.3233 8804.3392 16910.1294 58765.2347 13799.0126 32321.8947 12598.0072 45478.2644 8959.1898 6084.3142 4362.7697 12248.8959 119505803 dmdA Sulfur DMSP degradation NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5847.8375 11350.2725 19267.8703 3978.9562 3218.3333 4694.832 6657.0564 4458.6275 72097.2742 3875.6695 5802.8133 2864.5326 2864.5326 2823.0661 11304.7894 8263.3067 4992.7081 6861.5065 7305.7867 4213.7753 3033.3267 14659.4333 2687.6608 13247.9152 5918.795 5376.2284 5205.786 4866.2538 6055.0148 4437.3598 13354.5022 298291958 fccab Sulfur Sulfide Oxidation NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 26060.5505 131941.8314 39845.695 27659.4776 13650.9962 28641.3966 21945.4713 11259.9163 12966.9899 29704.4692 27917.3976 354195.6952 23960.138 26390.1475 32017.0176 31256.5018 31256.5018 15443.5214 36124.6775 22070.6005 58319.6677 55204.9077 25723.7539 36425.0494 36360.4007 25913.1047 16013.1818 110784.6392 31794.7536 33976.3557 20640.0898 20908.6362 18909.8203 11376.6366 33777.4257 113731798 limeh Carbon Cycling Carbon degradation Terpenes Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 4618.2773 25125.9303 49186.4026 13321.9822 6680.232 5894.8021 8845.1663 12775.2021 152224.2799 12711.8658 16783.7514 12880.8709 6273.6217 6273.6217 7966.5495 22609.4184 17858.695 53088.9063 3069.6526 8007.8287 40778.8164 7797.2646 42951.0466 29462.7682 27081.312 13971.5181 12006.4343 4320.322 5029.9719 35212160 amyA Carbon Cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 10720.2239 9261.9315 4165.6882 6931.4487 4284.0169 4770.1057 9653.6614 3089.4257 80394.283 4204.0507 5187.3309 12793.8191 3517.4822 3517.4822 4274.7477 10714.3454 6078.7737 8657.8115 11297.1052 8011.6015 3899.5933 3957.9775 10261.5623 3836.6687 11033.6393 13822.8344 11292.1483 7100.4922 6024.2705 7819.5843 4841.4173 12875.2413 158139619 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 5227.0722 180227.0865 8573.5869 3800.7043 4945.4591 9077.5065 111887.5595 5139.8966 3980.9637 2410.4476 2410.4476 3792.0778 9572.618 8875.8529 7548.0101 9675.6641 6664.7294 3781.6307 4069.9006 7252.6316 5289.2359 16497.5394 6631.2859 12117.739 2720.8625 4216.29 6653.8401 6047.6513 6825.6176 336009639 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 5_1_57FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5682.6882 10440.986 4555.3567 5252.3409 2745.6448 3586.9246 4675.2625 3082.7495 105647.4259 6455.8576 6122.3275 5159.5638 4441.1756 4441.1756 5767.9958 9933.9792 6760.7399 6429.8118 9113.7279 7321.111 4472.7283 3699.6031 6263.7283 5485.7092 15372.1222 7097.2413 9429.1881 2122.4159 4848.9343 11448.8061 2821.0954 6706.9759 157101502 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 6974.6785 7122.8274 10675.8148 8500.2106 7841.4242 13380.0316 3904.8914 14654.975 7785.1917 6982.1172 384535.9354 20657.0023 6841.2983 30681.7555 3916.6255 3916.6255 5150.0821 18985.8056 8954.073 8241.8633 12535.9613 9700.1328 4396.6052 5790.0957 12199.7713 8568.4294 33867.3252 19394.3586 13216.2633 41847.0417 8826.283 18342.428 8008.102 11333.6667 392723554 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 15528.0619 38094.0723 54044.8123 10960.1482 9238.3657 10432.234 28665.2168 12605.8889 23681.0475 23465.2419 25854.3771 361278.8118 18010.7105 24815.0305 29487.7241 23512.1986 23512.1986 13662.8641 35944.1786 132649.6854 12382.5155 18459.3814 31014.4162 11964.0736 18452.1669 22445.9733 17623.6071 55907.8829 10219.2873 34380.5556 14646.0875 19785.2937 32391.6367 15721.7597 13847.1709 238696735 trze Organic Remediation Herbicides related compound NA Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8304.3985 278616.0509 9962.3917 23406.6082 6892.7309 4584.5025 4737.5979 4781.9739 5897.5024 8257.788 127237.2699 10499.4616 19047.9859 14224.7334 7847.8194 7847.8194 5198.8435 11766.8168 7745.5996 12567.3742 6683.9331 10427.0145 2628.321 14321.829 11685.9306 5095.115 16391.4512 8599.4027 11409.7433 4284.7121 5722.8404 6570.8227 3876.7806 10774.5843 307770624 PRK Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 19102.2587 18885.4256 10035.6684 29633.7433 15637.4148 14892.2603 13523.2866 8180.34 18055.4634 20369.4335 8177.3348 441126.5497 22808.7627 19424.6659 13172.6143 13216.3257 13216.3257 14669.419 22963.6162 20538.0477 18754.4118 24493.737 20778.2911 9401.2619 9591.084 26516.3247 7926.6782 34547.7531 17526.6016 24153.055 7478.3226 14804.3938 11507.9757 7690.9629 31906.7048 269979611 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 14825.5656 23965.5845 7744.7386 4284.7449 92546.5184 9968.475 12892.2282 26081.8067 10721.0859 316956.8865 21385.6831 27138.0721 13533.7008 11096.2708 11096.2708 13958.5526 24496.1216 19012.4728 15624.6295 19102.6812 13766.1216 8317.2615 8007.8692 23266.0321 9191.7768 25228.1641 17218.3501 28853.4995 6452.9708 11777.5348 14999.9581 6358.6457 16317.1201 238497984 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 5049.3794 10867.6386 13285.5939 2775.0708 3126.521 10814.3216 2609.1949 7178.0894 10185.4263 4562.4559 4562.4559 11828.4607 4545.3627 5404.0352 15609.1544 9277.9951 2750.9405 5954.4477 9951.4869 6028.2769 22589.2507 7101.3945 14753.6245 3936.6899 4417.1081 3877.0265 3387.041 384566222 bphF1 Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 48584.4695 23166.1454 34396.82 14472.0379 13328.3953 30203.2163 28547.6786 31350.5384 23396.8369 36038.4917 73819.7306 779136.2259 74631.8619 84147.9787 33267.5447 48192.0586 48192.0586 35515.4916 66947.0788 30557.6307 38812.2724 50048.0444 65200.1413 22449.5223 25430.9766 31340.2884 33084.3137 79808.1704 23790.4029 45067.4006 30295.5994 37967.9878 66030.8654 35105.6647 50172.6644 146191610 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 27599.8714 9646.4756 13636.1502 10745.8951 168186.4377 7709.208 99849.6683 3674.0847 4456.6117 4876.0656 4876.0656 7510.6764 3347.7217 8390.3086 4993.3872 9518.9812 7232.997 3721.7433 50582.2508 11258.2094 7614.446 4484.6574 4173.1145 7236.5843 16116.2378 144578352 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus lucimarinus CCE9901 NA 28336.9866 11701.7783 5821.2078 3493.9492 6908.3165 2931.9683 7924.7212 5778.2439 2355.4827 2355.4827 7231.9659 9155.5058 4384.1506 6047.7685 5678.234 4142.2835 7161.0048 3133.0869 10282.5962 5398.3258 6722.4963 2267.7254 4744.4188 6713.8507 376007852 tktA Carbon Cycling Carbon fixation Calvin cycle Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 12265.2677 7977.7686 9734.216 8049.3524 12954.9931 40906.6154 10338.3203 11892.1059 20176.8643 7695.9257 240970.2836 13816.2344 22164.7101 13649.7152 8096.2231 8096.2231 10248.7559 26238.3293 20522.692 18293.0235 18769.7922 22038.2089 8678.361 12069.2432 17297.6703 70037.9157 68545.1219 11988.8067 17229.4022 19131.1479 15937.467 12438.4869 9376.7454 22638.5794 188520791 nbac Organic Remediation Aromatics Nitoaromatics Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 26006.6424 1113006.5636 8381.1482 250044.6194 32060.3247 21737.7887 45818.2499 119565.7432 35734.7944 33574.7843 462616.7404 24678.1535 32898.3287 37346.4243 19036.2139 19036.2139 15198.6808 30483.7004 22007.9829 44537.0192 29446.9347 37673.3069 12395.3935 12188.5151 625060.4561 56604.9585 68301.6521 12947.4537 23136.7205 12491.4575 24864.7005 20293.9036 20361.5139 60334.2232 169605891 protease_serine_fungi Carbon Cycling Carbon degradation protein Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 5676.2645 10419.0732 54768.8651 33658.0744 3514.289 6560.6016 5332.8017 3219.2184 113062.1741 10934.0112 7050.8259 10267.9135 4798.6104 4798.6104 3906.7265 29661.2812 7569.3482 7002.7214 7811.9694 5555.4491 3852.9783 4926.9329 11622.5141 4159.5844 17503.2344 10239.5671 12675.5348 7778.6647 5620.0276 122078.3478 3439.3762 6837.8948 254948566 mannanase Carbon Cycling Carbon degradation Hemicellulose Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 139147.9827 55088.787 79390.4954 168599.118 152443.2738 55458.1458 82288.4284 91367.968 147952.4995 114083.3407 111976.4758 95886.7857 2520229.4672 109847.3833 121966.7634 148885.2103 84759.2274 84759.2274 76062.3809 131628.9512 226398.6497 139131.2603 370208.8238 151703.0639 206881.4582 55801.77 106001.2187 88710.3663 457057.9076 150917.9588 145678.6749 48712.0528 86525.5072 122879.7918 62309.7365 426449.1545 70906158 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 18002.3259 11283.8348 41206.4849 5329.0871 4365.9832 9268.9056 6948.4825 107668.247 10413.3841 7047.693 5386.235 3700.0534 3700.0534 8381.5334 15352.5543 14444.3751 13448.4562 24176.5738 12191.3769 6685.997 6705.1404 9373.57 133754.2311 28907.3904 9853.8501 11046.8822 337666.2565 17692.3899 14078.494 5792.0392 13760.8001 375144118 chitinase Carbon Cycling Carbon degradation Chitin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 7945.3504 2288542.562 430979.9156 5793.2258 3699.8192 3100.1942 9196.3054 4298.1436 3112.5161 94563.0706 6926.3428 3779.4603 8656.5513 8656.5513 3183.1021 7805.3903 5988.3804 4980.6319 2549.6036 6255.7591 3269.3161 16647.8145 7025.4318 7834.0893 3054.0149 4111.7661 4387.7071 2990.7988 66999.3521 386851558 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 156948.2177 57966.8812 87262.828 389779.7778 328402.6038 488503.4977 66397.1574 241540.5776 98363.4405 177512.2701 154424.3033 144746.921 6240953.1714 366889.8897 207239.5237 306794.0701 252671.4772 252671.4772 109048.9349 261222.3412 199159.2616 101784.9869 292088.3427 1281452.7977 87251.1109 343481.9385 391494.7581 93804.2574 279072.522 218755.3001 225163.8209 101173.5988 212882.782 256780.619 119347.3732 136245.3445 227069433 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 15952.1321 9069.0976 5540.3592 2869.0689 4669.321 13532.2401 8027.9624 99880.5992 15248.6301 12878.6201 17849.2241 5077.134 5077.134 5837.3975 12273.2249 8284.3535 8686.3917 9193.7644 8300.9912 4843.6768 6488.2242 18555.4253 5278.6791 17187.6436 14379.3123 19276.3244 6468.2528 6823.1877 14343.0713 6147.8594 11294.4778 83574500 ppx Phosphorus Polyphosphate degradation NA Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 45157.2401 18539.0534 33681.7102 66108.0289 25115.089 10296.3349 24785.5461 11185.2047 32214.5758 44282.795 29377.8654 749805.1944 37829.6925 25969.1307 33396.6611 35125.6633 35125.6633 50110.9843 69330.3136 47658.9229 21123.8769 43245.056 31818.4027 35876.3836 27860.1508 43192.5948 23421.7667 652384.7683 148512.6433 89738.1122 18756.7952 56783.6014 75119.8164 18057.2306 36319.2862 334892478 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 4058.0541 7576.0072 2347.9729 2853.9793 7312.1588 9118.2233 2932.2972 76320.6785 4894.5328 5258.1954 5065.5025 2862.5031 2862.5031 8692.4032 5206.521 6319.9146 5494.0197 7003.8838 2275.1275 5325.8882 11023.103 6175.9428 17846.5786 5516.1335 8580.0659 3432.7399 6092.5049 9206.0369 3135.4576 5636.1912 198268651 vana Carbon Cycling Carbon degradation Vanillin/Lignin Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 4441.0362 9155.3607 8324.3276 17961.3588 5945.538 9058.463 3012.2004 7073.6665 7496.2643 83532.6449 4234.9602 8716.6789 1919.3628 1919.3628 3641.794 7731.8098 4778.1518 3883.8009 8516.7858 7915.198 3240.0121 7922.8741 3348.239 14029.3885 7456.2204 8531.0042 3251.494 4454.3421 3979.1183 3219.3705 7804.3363 9106794 linc Organic Remediation Pesticides related compound NA Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 140379.0638 66795.7069 518488.7241 305040.4696 141375.9736 36044.5629 129981.6922 137973.2012 64117.4515 99916.3404 109943.9553 160300.7449 8804637.8607 144724.6963 138512.6296 206967.9654 134016.1204 134016.1204 84874.6283 209508.2582 88723.5477 161754.7103 289386.0997 373203.0736 83559.7403 54843.3334 242306.9213 150010.6006 537427.0686 129299.3456 211170.982 107278.9909 148053.5426 111185.7748 117698.7446 222245.795 182415051 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 9253.258 8165.3063 5504.1845 5629.1106 4616.0812 229823905 amyA Carbon Cycling Carbon degradation Starch Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 9798.9252 5447.5981 10006.912 14046.7248 7324.4236 3844.9318 9202.5562 8009.31 9797.9443 166206.9174 6945.956 9771.1774 6197.3591 10815.5535 10815.5535 6203.6925 15443.1805 10072.9699 10979.4343 54154.9365 8797.5027 5397.5267 6956.8577 11620.7082 4453.2034 21686.6757 7684.7816 12430.2116 3225.7481 7112.6998 8491.5379 11124.1976 11498.3443 4106534 mnp Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9732.6155 4003.5232 4611.4224 4404.2007 4778.7922 6182.4171 10563.6822 3996.8005 85636.4448 6742.6779 10985.1679 5657.3962 16820.5486 16820.5486 3548.8065 10592.9782 6356.9012 8940.8434 10274.6522 13902.4489 4674.0082 5744.9768 16431.8033 3620.7336 28509.8063 12431.7674 7876.064 5116.078 4454.8522 6734.9403 3489.7489 6099.83 115423322 PRI Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8953.2361 5642.9303 5799.6657 7822.7997 66957.2761 5060.942 4475.126 3882.7459 3882.7459 3140.5466 24903.2831 17720.8255 3508.6223 3516.5525 9054.8069 16090.0833 7485.7954 6747.8402 3360.5467 8729.6696 8079.6261 9451.9155 4933.3285 94971105 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 18227.1031 5703.6217 11590.6024 1063613.2589 7874.9001 7671.8441 4061.609 23682.5528 25121.5276 51856.7467 186812.9476 11628.685 11259.0432 15662.4637 7353.9285 7353.9285 10164.488 18731.2693 13621.8852 8079.5068 9918.2479 8446.0675 6306.0795 12080.894 18551.2541 10781.489 24011.488 18494.2616 21601.8683 12732.7204 9268.2489 22534.8431 28738.1608 12690.4288 192287065 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8533.1849 20859.3265 6366.2117 13831.0382 9559.5034 7200.9193 2561.6247 250663.8911 53145.7828 6625.238 6601.2103 5008.8382 166093.4812 12200.5118 24260.8366 6718.9489 6224.4467 6224.4467 4746.5194 10858.6003 13348.2742 6522.4568 17877.6706 135472.947 4422.9606 4409.596 12216.3229 4997.0026 16269.5338 9786.6852 12653.3866 5519.4949 6875.6301 17361.0885 9526.9737 10467.9423 315123197 chitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 34998.9116 14650.79 8111.8636 7233.2815 223168.2154 8801.276 17200.0576 22823.7478 25508.0775 20155.361 547877.1479 42114.2568 89257.2949 27410.2975 23146.6561 23146.6561 42167.5585 37542.8182 20131.8588 81363.2706 101309.2052 57447.1373 9974.3991 25829.5173 18278.5857 53265.9495 74163.1979 60071.3361 47665.4958 10766.3138 30476.952 33677.4064 17629.88 267115.2347 116621219 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6727.4959 4831.2043 5633.6864 9219.6007 3906.3743 4438.6475 9931.8404 6992.3566 5437.7675 119460.2512 6693.633 12469.4483 4320.9641 3561.2402 3561.2402 7125.0947 15275.8503 8390.1638 15121.96 11577.9614 7490.5897 46504.2962 5642.6675 8974.399 7218.8527 16003.1705 3495.3896 10006.9454 4165.7445 8804.244 6964.5144 4980.5058 11042.8036 74038394 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10053.5389 12119.2349 5590.155 5212.2847 6553.3074 3035.0601 8868.2284 6059.0544 13218.1971 5691.9893 98034.8351 9690.2344 7670.6106 19315.3314 10795.2708 10795.2708 9511.0985 15447.7951 8738.1315 6819.4817 9875.7723 11908.514 4704.8579 5965.1422 13607.9197 5003.3254 23773.9879 8438.8608 11797.8301 7160.6288 20091.0682 8307.8872 7424.9987 15972.4382 71909397 xylj Organic Remediation Aromatics BTEX and related aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9146.4977 2738.2044 5459.5032 7412.8652 7412.8652 4698.9594 5763.3755 2045.73 5971.1129 5820.7031 2303.4355 149357236 pula Carbon Cycling Carbon degradation Starch Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 3798.7374 20051.1352 3870.7279 82591.2554 6433.8405 13170.2767 3689.3436 15347.2432 4689.2046 5452.4017 3898.4353 5929.6244 4235.331 6114.7693 357976398 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 27009.0502 11578.831 16570.6785 12872.7643 9369.5895 14222.2458 23731.9148 15130.8701 42863.2723 51851.5237 16917.5903 820287.4288 63333.4691 91733.3356 61679.8824 31410.1562 31410.1562 12725.9071 40430.8098 13066.3808 21713.6626 48704.6251 96775.496 19189.3984 12763.7338 27817.6295 19777.5645 64859.9438 17355.402 21574.2399 8797.4176 14845.7732 23267.5229 8542.3563 41936.9539 404263910 atzd Organic Remediation Herbicides related compound NA Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22252.7762 17187.2457 8478.005 18371.4976 9251.9466 17671.3843 23769.9887 19103.7461 20675.9915 48677.9176 473336.3343 18830.958 24495.769 20740.7423 29150.5584 29150.5584 14814.6829 35029.1521 25386.0368 39326.967 36288.8153 32138.078 14768.231 19497.6913 24627.8163 13795.6087 51088.8313 28144.9692 52690.6481 10498.3464 19848.196 21736.825 13567.2183 34171.6296 23501636 ppx Phosphorus Polyphosphate degradation NA Brucella suis 1330 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella suis; 5793.3491 10388.0455 34790.7339 4617.6725 34903.6078 10347.7072 2751.2764 2751.2764 13688.1617 6633.9458 4838.6358 4704.7304 5053.2256 2249.1056 3190.4581 5574.7171 10089.9983 9652.4578 5771.626 3890.7622 5159.6615 5267.8923 6165.3186 9337.0935 356641485 adhC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 22847.3393 15855.4698 9270.7644 29837.0999 3580.6696 13739.083 4514.1599 7596.1488 11323.7184 10180.3943 142525.1566 87018.4143 24297.9168 9175.6346 11212.3785 11212.3785 5785.1309 7485.0054 12647.0033 13232.9757 16293.5601 122933.7147 5788.4382 9615.636 12888.1077 12260.6118 22987.8609 13793.1703 33953.449 7614.1802 6551.1913 17170.6622 4332.0372 8840.5545 377536448 terc Metal Homeostasis Tellurium Detoxification Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 36693.5571 18584.6159 43882.6358 29407.1848 194755.9838 40453.1258 18823.2387 38824.1611 28911.3564 31127.9928 35667.6504 20229.6517 792979.4841 49487.7896 48637.0609 57364.4442 41366.6007 41366.6007 31143.5708 42035.5154 40737.0054 151035.2016 48794.9155 52126.5463 20708.9085 31033.142 64323.2584 22692.9294 216957.148 50977.7668 51616.2445 19153.0231 26737.9143 30027.5814 18426.1243 40172.5418 380870522 nrfa Nitrogen Dissimilatory N reduction NA Corynebacterium pseudotuberculosis P54B96 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 7042.9018 4524.3443 2137.6819 2810.9185 17939.783 3655.143 140033.7922 11994.101 4620.5669 3452.7583 3452.7583 3390.8013 7137.6191 5849.2951 7393.9812 5952.9808 2367.5278 7511.9056 2084.053 10080.902 6215.67 2380.4133 3297.2726 4573.0985 6821.7027 78693666 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 27305.5872 12441.7053 7447.777 5249.2962 18463.7378 18718.3636 14057.6151 20259.7384 29753.958 15598.5537 155462.0247 14327.7409 8718.7468 108956.8065 15279.8934 15279.8934 20845.3673 43032.5779 11589.4784 11657.2174 17668.1026 23805.1497 24631.834 24130.3289 54690.1451 26652.3555 40532.3286 26918.4139 49047.8444 29374.0368 41651.9438 69455.8584 34872.245 15894.9718 405108851 nitro Organic Remediation Others NA Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 4167.0508 5804.2326 11597.1795 4088.9982 4905.6734 442774.8861 13965.2716 4666.498 4666.498 8776.0391 7362.7252 3774.8373 130721.1973 2655.0358 2943.7429 6661.0243 4789.7904 15781.0545 5489.8875 6007.2541 28850.3748 4912.8023 4649.8207 2669.0475 5667.7369 400198673 nitro Organic Remediation Others NA Achromobacter piechaudii HLE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 210504.7761 473912.9527 432862.7521 220222.7965 149112.6547 102011.9849 228486.0028 219624.3784 419953.7399 365848.9736 90988.924 2002628.6954 88705.2788 174053.6154 267179.7415 137910.4899 137910.4899 82403.7727 118277.9851 107468.2342 123269.8216 134983.4667 87410.4813 78387.911 68442.3421 143638.6104 106134.4268 549152.2802 174717.7632 110142.9856 68308.8464 157464.3971 101373.3669 240218.8539 161449.3661 288345549 alkb Organic Remediation Other Hydrocarbons NA Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 159759.953 16310.1357 267124.9034 870185.1909 704896.3633 48712.5608 86877.2636 145079.4558 90367.9228 230241.9824 103127.9388 84385.5664 2164615.1596 51395.2098 98463.6519 99555.2196 84074.8933 84074.8933 54046.9036 138112.1825 65420.81 142835.4011 189289.0182 137627.691 115482.6274 65691.0204 99013.2769 100689.3581 359890.986 97778.8083 110545.9296 292150.2142 268967.6864 136238.8731 57426.7068 111938.8675 385737140 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 126269.6583 14731.9047 90547.133 83480.8093 173350.1137 30200.7625 71066.8057 65489.1741 167439.8803 78088.7863 85132.096 69638.5661 1934979.7781 93425.5543 230738.1784 118622.5609 81940.0958 81940.0958 41494.872 103604.2745 78441.5981 126688.5761 178451.5926 196581.9108 266005.9463 138523.5005 85935.5621 49952.3738 256347.7742 174964.5751 158889.167 54143.4842 72416.2294 94737.5982 64619.1069 124543.8856 328795584 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11300.2254 11878.9568 7578.1932 4067.4621 2465.593 2430.2839 3501.156 728883.706 80524.0182 6647.9627 5475.9219 5256.2397 10939.9005 6928.61 6021.7823 14420.2099 8109.3818 3759.6299 3611.5989 9934.1529 2554.826 12648.4586 7915.6598 10463.0111 3046.0145 5032.1259 5726.323 3166.3321 9473.4904 378592764 urec Nitrogen Ammonification NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 5444.538 6239.881 17347.5938 2289.5829 3749.1852 5089.1925 4268.4376 94862.2138 4756.7147 5269.7682 3807.4262 3807.4262 3725.9493 6413.2206 5233.6036 5242.1587 5518.4043 2226.9439 4311.1261 10015.4289 6199.0988 8607.619 5805.6611 8139.2624 2809.0861 4339.3108 4125.0725 1990.9237 6089.0868 296426331 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 15015.9074 9089.4957 81701.7728 8786.8354 11136.765 8352.9725 7825.0269 8809.191 13040.1988 6938.6422 395583.5924 10641.3404 11947.8235 6300.9564 6216.2439 6216.2439 7898.0662 32894.0215 15881.9488 10616.6537 12301.2376 12253.6146 6518.5268 9459.3386 17944.1391 19049.7319 24503.5964 12957.7236 21044.0558 7903.5579 13980.2979 9663.1765 7789.4526 17159.126 303276651 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 9108.31685 7684.96315 13680.2173 35903.9527 7389.2659 11571.8999 5182.5912 8413.27405 12698.513 8127.27435 7055.438 7055.438 7689.9166 16747.09305 11590.8185 15565.9214 12963.5049 15392.48565 6041.75895 6683.47765 28896.83855 14014.94935 16287.1496 4905.045 7480.8872 11560.0973 14027.02255 145349352 actin_Viridiplantae Other Phylogenetic NA Ostreococcus lucimarinus CCE9901 NA 9091.3955 6375.0697 6257.91355 23050.79745 8099.1473 9362.4455 2261.5829 6057.64915 10045.20095 178251.4967 7344.459 6892.22255 11677.23525 5693.6759 5693.6759 4668.40625 24508.51765 8579.0274 5659.61415 7822.31725 6049.87205 3159.53155 5786.2244 12887.92165 6147.0856 15851.41675 10373.8637 11248.284 5205.4508 4914.51095 7261.1087 4843.8223 114332096 terc Metal Homeostasis Tellurium Detoxification Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 7448.5744 6389.5751 12457.001 6251.1921 3793.4779 8087.6747 5570.4609 25050.7999 20018.5716 9912.3709 161673.5329 15182.2427 17767.0148 35380.3678 11315.2793 11315.2793 13132.4452 15255.5052 6712.6376 72158.2565 14320.8939 9765.9923 11876.9662 11076.0045 8530.1967 13399.4614 29760.7158 12500.0252 33104.8165 17084.0479 13464.2154 23664.972 14704.6756 15968.9087 332592150 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 115248.5098 26538.2064 88156.4603 62594.1374 49632.9079 10566.6813 51915.991 64919.0776 52227.4985 70737.877 80386.2431 57024.0198 1575665.1997 146865.4219 98145.4054 230611.3969 70016.4989 70016.4989 56515.738 162184.7699 58990.2323 88092.6141 93310.9736 88222.2049 53906.5739 71957.6589 101089.2977 57450.0824 177782.5935 72295.6496 89077.8114 46663.0529 54246.8008 71540.9886 40646.6529 254969.329 83632046 chitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 68209.2128 306140.7663 41014.763 28498.8797 17290.8622 51937.7489 38998.7906 85653.3271 56092.3433 50935.4286 61803.0619 974826.1624 148603.5302 119366.6842 253295.472 75650.2402 75650.2402 28707.4881 99519.0373 32140.224 298680.4738 78171.6759 91817.9564 38790.1971 32288.5002 83672.3164 38047.4142 118670.397 59906.244 90080.9943 40462.9868 45064.6839 51882.1218 40918.1536 119092.5468 91795546 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 4556.6473 6804.6026 6867.7969 87338.0013 12444.6526 10435.1184 20079.4822 3363.2656 6072.2951 7194.6953 7074.6406 197260.2597 8058.502 8333.307 26932.3434 19337.0038 19337.0038 6763.8236 12229.6068 4645.7624 16166.1907 5350.9287 14041.5252 15515.329 8679.4746 11134.5188 9705.5276 4721.0096 4270.3955 5468.2419 11453.5959 308747132 terc Metal Homeostasis Tellurium Detoxification Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 5574.7979 6562.5287 6516.7798 107212.9564 5956.5441 5718.504 3745.2494 3745.2494 4287.6759 9886.1863 8840.6994 5792.4626 6660.2663 5933.5562 3375.425 3201.2459 9613.8095 2467.9524 20068.4001 6951.4498 18328.1693 2964.5048 4844.9819 4465.9131 3155.1391 12378.4661 351591786 mer Metal Homeostasis Mercury Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 61844.1752 46825.4054 30137.9532 56618.216 28320.3087 19950.4297 41561.0775 37727.3037 28689.0113 46008.8701 71175.0279 110236.0387 1315385.5901 284304.437 56899.4521 118627.819 48779.2507 48779.2507 26517.6693 65233.6613 63236.4791 84159.8366 51013.3021 83162.3429 41279.4023 88356.5326 138795.5606 31398.8678 88805.1021 44922.8665 71253.3488 25876.2636 150227.9676 85491.9076 29796.4826 74090.2755 377560582 badh Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 4839.2071 3159.8963 3818.9758 3648.1123 4174.6996 106018.254 4391.4255 5734.2379 3862.1315 3862.1315 5183.8898 10185.6419 6571.7298 118847.0764 6709.3389 11385.5629 6182.2042 6874.308 4186.2453 9662.1415 6775.9058 9863.4595 1922.0121 2797.3194 8818.8694 3223.1283 11047.9987 381380906 terc Metal Homeostasis Tellurium Detoxification Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 7155.4983 4940.268 10934.1627 18396.2487 8084.1993 4880.8859 7058.8521 4583.3209 7546.2806 8596.7628 6792.0261 173210.8542 6592.6122 12373.0457 4354.9932 3057.4515 3057.4515 6335.4093 14126.8293 10043.7531 8248.0445 14095.7403 8940.7956 3616.3752 14341.4977 15014.0667 7303.7602 19253.3291 5429.3399 12968.2177 6280.7843 7437.9538 7788.8374 4050.6004 13453.2028 373253270 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 66383.2032 12577.6195 10496.5925 6172.5096 5628.2063 8543.9782 26570.2534 16928.7614 19790.0675 300853.0402 10472.9279 14509.6236 8174.5495 9386.4461 9386.4461 11875.4488 21913.7201 6669.7158 8216.6705 165083.7261 12594.5379 7304.8521 11313.5309 15648.7842 24363.4911 75482.3362 10127.9476 12375.6614 5093.447 8845.7927 39217.8175 9829.0779 11445.2245 383780082 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 54904.5995 23416.6326 33123.5899 44788.5405 53223.6665 21680.586 44746.1563 112094.5149 22131.2199 39431.8901 59217.3583 35020.1258 1115826.2497 60708.8322 73395.5591 70671.8866 54418.6489 54418.6489 25134.2083 69529.3338 37573.0931 71832.3819 48095.6093 106868.5956 32036.9887 33785.9447 61688.0659 33714.4528 97964.9453 50183.8838 202495.2733 26880.813 31284.8074 73066.1392 31901.6744 121699.8208 333480072 bphF1 Organic Remediation Aromatics Polycyclic aromatics Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 138893.1841 11375.6798 4879.2538 9005.9032 88519.2212 11211.6146 46726.2082 8160.1481 37633.5858 164670.352 7048.5093 9578.6151 10988.4786 10988.4786 5808.6795 16402.2169 12080.7287 9199.926 6793.3154 7651.7693 7536.9389 3031.6264 8101.9829 28353.1562 145699.799 9548.7721 16617.1713 6189.0307 11749.7509 10699.8457 9602.9763 5387.9234 31088842 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Gelatoporia; 7152.5461 12037.9291 2662.7713 3797.9401 2710.7114 6941.5903 4677.2792 144782.5442 7137.8196 6375.937 2557.5849 2557.5849 7215.7167 12668.5832 6816.4895 6635.8762 5626.575 4484.5202 9306.042 2448.4259 12226.1106 11717.6683 25022.9039 9889.7213 10639.093 6019.2629 4330.0345 6255.1237 336069221 amyA Carbon Cycling Carbon degradation Starch Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 11485.264 33067.2726 5969.3887 37140.5363 10965.5355 6384.8732 7338.6073 5349.5995 7981.6412 16657.0383 84318.2435 9272.8594 109544.8331 20529.0298 7169.7933 7169.7933 6915.0297 11159.2581 9416.277 54250.574 5404.7968 4194.81 11245.5468 10804.4212 5080.3095 12664.6897 10132.1438 9908.388 3585.2318 4732.1708 10352.9956 5412.4904 9132.8382 327371722 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 7068.3998 537220.2382 7375.9878 2231.7295 6152.1878 4924.5229 4599.945 23251.8067 9612.9459 20767.4879 39160.3774 4997.7973 4997.7973 3175.3293 13105.4722 5648.9665 6687.0784 19456.3423 7925.7884 4107.2051 8329.2215 10886.3189 8459.8186 16870.1108 7799.4425 13612.1859 6666.2185 13910.6476 35297.9148 5354.0835 4683.5269 155212613 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured haloarchaeon FLAS10H9 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae; 29888.0299 106785.7253 7381.8226 20292.7218 3449.5317 7245.4035 4924.6107 3720.7066 88201.1616 4663.4626 4171.2957 3868.403 8106.3744 8106.3744 5387.4418 6187.1523 4830.0224 5606.7173 7813.228 5530.711 2585.767 5180.9912 6379.0253 4629.7849 18136.83 6295.9936 9926.008 6877.1957 6649.869 9440.1844 3796.9089 157804771 APS_AprB Sulfur adenylylsulfate reductase NA Thiodictyon sp. f4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiodictyon; 5830.9745 25758.9951 7968.2905 6580.5182 2734.1398 5428.5881 98004.7951 5013.1065 5376.8954 2488.8798 2488.8798 2683.6091 7958.3036 4208.1544 9035.2724 2534.126 4228.4809 5992.4102 3769.0061 14954.2264 5181.3921 7957.0609 3767.6937 3301.7689 4451.0122 2276.3457 5637.5443 39837158 catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6613.147 9960.8081 7290.8941 5349.9006 3458.3007 2241.0754 5681.0893 5575.799 4296.7349 178557.81 4184.6064 5659.4485 6252.2489 3961.2465 3961.2465 7030.0392 12580.4549 8088.2895 340100.7731 6532.832 3932.3868 3102.4123 6358.599 9365.3471 4416.5839 15333.4776 6443.0301 9942.5921 3103.0047 6837.0978 8490.9976 3322.8349 7280.9246 170116763 pme_Cdeg Carbon Cycling Carbon degradation Pectin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 39927.6632 10184.6246 115761.8647 18816.3613 27060.4175 11181.162 24722.7157 23955.6743 12738.3017 23027.2442 26268.9097 20079.32 654413.0348 32545.314 55173.4679 44607.4651 29007.6992 29007.6992 69144.4377 47080.9652 23635.8002 39342.4124 37448.66 34902.294 16941.0762 14713.7739 28744.0018 56429.9067 91038.2495 16323.6816 42657.0248 38922.4595 33592.1127 36585.7054 65115.0334 31575.5725 73535158 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 360892.3266 19675.431 9344.8207 12021.6023 25894.4374 4406.5163 9617.5952 10605.5422 24069.5359 358932.087 24471.5483 13394.5178 24026.6664 7185.6471 7185.6471 5484.4107 17087.8974 10819.9518 14186.9909 13675.4029 12902.5048 5394.0873 8660.7052 10772.5179 22397.0902 31032.1498 11686.4312 18386.5641 5830.6663 39522.1158 11278.5418 10599.0163 10061.6453 288961232 vana Carbon Cycling Carbon degradation Vanillin/Lignin Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 5585.8195 10360.6419 6120.4439 9104.7608 2451.3397 2743.7204 9172.6522 4743.7571 3852.1269 6378.3705 2364.0124 2364.0124 6439.1464 3933.0008 4285.1958 4503.7099 5386.6714 3437.5643 8988.5111 2081.8617 7799.3271 4764.3046 6835.2159 8048.1508 2932.6832 4541.0459 5052.6592 16989.9977 119956352 amyA Carbon Cycling Carbon degradation Starch Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8367.3962 8594.5651 27177.9982 7793.1589 3471.8076 10133.3657 3943.2289 10153.782 7597.8855 3386.4573 183666.4274 9653.8346 9850.5591 12579.066 7703.3617 7703.3617 5804.1549 15194.3585 9000.2531 7483.1851 2992.7854 3970.1064 18885.8891 3199.1174 14760.4154 13501.5611 18706.9382 6391.1066 5945.2662 5319.6289 6065.7817 125497235 pula Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 8013.0326 6329.1725 12185.382 15079.7203 5021.3511 5117.4001 4588.6267 2928.659 9017.8311 7489.2754 3677.1371 248705.2584 12357.2603 8939.3471 12140.7423 6318.2738 6318.2738 5691.8632 17593.0803 11090.628 7650.2706 10289.1582 14068.5049 3684.1679 5526.4965 16251.6268 4165.8858 21187.7115 10141.8495 15021.0469 3525.4508 5834.5966 10317.616 4042.2133 12433.9866 325547945 cysJ Sulfur Reduction NA Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 17326.7536 9827.8614 69043.6329 21409.6169 5042.431 9647.3266 14852.3814 5978.8599 9137.893 9277.4014 5829.5928 330952.2261 10715.1232 10508.0792 11453.8805 7712.6112 7712.6112 11040.7634 44784.3388 11433.124 8459.125 10285.0118 10608.111 5430.5484 6376.293 16819.3696 5970.9897 22219.2736 15056.5113 13560.3159 6263.6593 9095.6922 8115.0677 7828.0178 19598.498 359794926 rubisco Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 6893.9113 20783.7661 70611.9665 4981.0773 4008.9485 9948.4606 8989.6385 4834.7467 2426.7501 2426.7501 3905.9133 10658.9611 10879.2046 4988.6398 9653.6471 10972.2811 4140.5249 6221.7448 13162.8591 15874.9641 42447.1673 20837.1567 8516.9732 6789.3282 5189.6444 8126.0763 6461.8885 11713.2137 162147323 alkj Organic Remediation Other Hydrocarbons NA Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 20847.6898 45061.4504 62352.5305 100116.5913 20098.9855 200679.6198 23551.7021 9811.6046 40335.5307 44078.945 18058.8515 464256.1338 20048.8897 57850.7898 118523.3936 57074.2175 57074.2175 27476.7812 51376.3815 44978.5717 22924.6593 17445.1805 23504.1564 10963.4546 23983.0846 37699.1833 22693.2915 67043.7248 86312.8047 50555.8102 60256.7079 26716.8455 24102.1347 46296.7434 19834.9182 353674630 ppx Phosphorus Polyphosphate degradation NA Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 6074.1096 44331.3334 3666.0035 5560.0525 12321.8633 7071.3085 151594.1094 8255.6564 4858.2042 3866.7331 3866.7331 9722.6136 4960.2801 7755.0315 9273.8102 7728.3034 9194.4487 9970.7177 26217.459 4899.8373 9725.0249 8225.5016 7589.3911 4138.3586 4737.5392 12811.1575 110819505 mdld Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9581.1138 9766.4562 14305.60205 29906.81545 2288.2453 6078.744 3970.4758 3762.77125 9256.55715 97803.4295 6205.85335 6857.89755 11897.2392 7628.9521 7628.9521 3816.2278 6409.97395 4238.3844 266168.6767 5437.6951 4509.3033 3411.214 16311.8545 3274.7471 15630.52645 12027.5884 10920.68275 6582.2932 7211.08975 11345.11445 159180619 SoxC Sulfur Sulfur Oxidation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 12499.064 7119.4496 39987.946 17109.6954 18843.7933 7318.1299 17613.2375 16578.7227 165663.6432 20616.0751 10189.3644 79001.4854 17912.3986 17912.3986 43030.4172 15789.8914 9949.7193 27718.0368 50051.9941 7644.9048 6444.1068 10438.7193 13571.2209 12253.5552 73781.6985 41100.7614 21988.7768 7810.8849 11693.0836 43221.5098 43907.0191 14767.1372 374303591 tfda Organic Remediation Aromatics Chlorinated aromatics gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 51892.5672 6051.8315 8730.4734 27429.371 27326.4826 6210.4044 5685.6226 65055.5963 451251.4279 158234.9333 315658.4466 20123.3627 14334.5928 197589.9478 5269.3909 5269.3909 8826.2194 26105.8979 14714.8572 189157.0786 77176.7098 12436.5773 7999.0281 8657.5315 53213.0188 9878.9325 30365.2591 54932.1596 21202.0773 14764.556 367862.2077 11790.2468 10183.9978 22953.822 118660505 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 13340.883 4705.3923 6329.4612 14087.1319 3089.3689 4181.8324 2980.7799 6320.4427 6945.0003 4246.3634 91500.3444 7134.2032 4540.8582 4616.7664 2121.1238 2121.1238 3192.1102 10219.64 6280.4541 6231.9009 4674.9469 3589.3868 5201.6593 6980.7995 3239.6439 22169.4831 8237.8581 13760.1798 5951.1903 6281.7768 24643.5047 3836.7509 7319.8768 212640012 amyA Carbon Cycling Carbon degradation Starch Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 11905.6663 7802.4829 5508.181 7615.4809 26363.3576 11900.5783 8206.375 10795.806 10173.1735 6123.2927 269316.7738 11563.8891 10927.797 8304.8386 4951.5261 4951.5261 7199.845 17475.2706 9005.4538 9659.9968 14436.1859 10082.2832 6280.1823 5897.6546 13231.4737 6917.6808 17759.6807 4339.107 13179.3112 7373.2601 7867.0053 6716.3605 5452.9018 12482.5968 373555364 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5214.5735 2440.1286 4001.512 61280.9951 11732.5115 11732.5115 7076.5773 7855.7032 6616.7579 6843.7837 3316.5145 10025.787 11127.3184 7594.6326 6971.5154 2646.2962 3713.227 7548.6569 2474.4729 305857705 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4913.1602 3754.2215 2584.2223 2273.3513 3405.1471 4320.976 62961.45 3829.6931 4742.1398 5603.3557 5531.1947 4727.8712 2242.4734 8124.4564 6534.5595 2494.0073 3309.3442 5797.9144 119670562 catechol_b Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 21948.7755 6773.8697 12032.4003 26353.9919 9299.9672 15833.8617 13227.7935 14100.0924 14012.6106 12234.9958 21221.6777 122596.9533 42885.7193 16007.4435 22250.7679 20181.968 20181.968 5253.393 47059.1385 24728.2759 60447.0165 26797.7889 5995.7348 12167.3906 33625.2461 18722.2946 20560.1768 57823.926 23481.9353 52888.8007 20979.2986 23635.5198 29233.8453 15414.6397 13240.0731 157913480 nirs Nitrogen Denitrification NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 13069.6862 6188.9057 8704.0392 22307.232 7132.3174 20129.6392 28413.8971 10211.8594 50826.2287 11718.201 9484.5401 246036.4888 26176.5932 14410.4611 10195.7996 28459.052 28459.052 9122.4154 26189.5932 12550.4432 55332.1023 12371.3801 13500.7943 5813.0891 5422.1712 17918.4829 7441.486 23423.6331 14324.5455 69222.6224 164215.1307 14409.9312 54973.9163 9100.5613 19149.131 371590037 xylanase Carbon Cycling Carbon degradation Hemicellulose Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 11695.8835 9092.941 15498.5304 11525.8877 149213.432 8170.7935 9543.3456 5820.5112 8064.5629 17821.4477 9957.2393 358722.0612 21351.5042 13680.8422 7770.6607 6504.9456 6504.9456 7930.8261 20491.306 18567.3909 12209.7254 18618.0137 20390.0125 5390.133 6818.7938 17124.8851 11601.6507 29065.8737 20272.6893 16679.4983 7500.9086 10772.0331 9123.4382 8425.8405 15909.0894 301108071 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 11884.2527 52883.0626 8804.104 13910.8114 11007.9468 13381.2126 5499.1504 19081.0993 9940.9986 17544.3482 202084.6307 34257.9059 10461.5188 11994.9855 7282.0971 7282.0971 5565.9184 21255.9689 13149.4542 15757.1638 33834.0668 12401.3783 9086.1345 42981.8831 19104.9502 11432.136 27006.7732 15862.2782 25759.6334 16495.2978 6243.9418 13873.0588 11179.9434 9100.3112 222354262 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 6595.4224 2997.2517 3545.348 3099.3679 4770.16275 7862.27755 71569.6932 4845.8976 10769.4919 17038.8838 3297.0573 3297.0573 9026.9186 10974.87085 20417.5435 33834.0408 7238.6607 9340.6028 29247.79 8621.2601 109024.4999 12140.3264 33209.1992 5230.1052 5082.74845 18492.1295 8406.3481 86606277 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 18121.132 8020.4522 61805.815 10917.977 26375.5276 7932.0181 7478.1347 11243.6027 235130.0818 8233.9995 15400.3196 27449.8456 12701.1073 12701.1073 4712.1265 38911.1342 11613.7328 31342.7653 9376.4356 5808.9241 3764.6705 13541.8491 12369.7862 24427.0204 24273.4892 14636.0339 28790.7245 10194.2425 11267.8967 10431.0783 12467.1246 27347.3272 373851601 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 128232.1257 53785.1849 77436.4878 32649.9205 267371.0493 41826.6161 48630.3261 106892.4133 30603.0799 80145.2566 132756.9346 50498.0694 1594052.7108 52445.0739 124829.422 252599.6395 38434.0774 38434.0774 126792.2881 48670.1087 30546.7535 51673.6911 96158.6971 405015.6258 28836.4479 31798.3067 61575.4132 27360.8802 101715.7414 36090.2961 63160.8723 24412.7132 51136.8042 83490.8362 31018.2804 36140.9043 193244833 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 81236.1064 127534.9727 81610.0939 81539.0173 37876.4548 48743.1527 331273.3554 71892.14 70066.4376 69306.8807 98855.731 3247663.0516 99909.1934 87288.4013 131554.0644 123976.1902 123976.1902 68683.3642 152673.8005 154899.6722 170861.8941 225525.1613 112308.6116 99317.8259 82055.6771 121140.7868 111177.6638 366384.1276 118212.5161 239861.1366 52531.6512 114749.9546 96915.7684 73101.1297 230998.7941 148537349 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. ASS14 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 142862.6633 1606377.2765 254771.7845 11046.0998 8047.7015 8344.5933 245395.9296 6272.3682 11282.7727 6183.1275 5336.2908 5336.2908 2798.3122 7229.1785 5216.2154 39809.607 40298.0341 18694.4087 86048.8272 9197.8545 574456.0249 130730.4956 12993.3606 175124.1579 7201.1395 4612.7806 6207.1661 5848.5975 419603.0298 192704.8895 262194709 endochitinase Carbon Cycling Carbon degradation Chitin Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 5512.2815 10741.158 3307.8234 3933.9776 3675.7006 75975.3027 7493.786 13399.7002 157027.7391 6759.2007 5754.4472 4623.4288 7156.3099 7156.3099 6424.3144 29421.0495 6887.1034 4775.6113 6714.2881 12503.2552 2892.1207 6975.0591 6240.697 16998.0406 11347.2556 11824.499 3624.5764 7650.1487 28274.9254 3499.8537 9104.8409 162290029 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermodenitrificans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4331.8479 7768.165 4691.4071 3248.126 4779.027 2602.886 4123.4096 3956.4042 19051.801 85472.2014 5104.292 4636.1869 3861.032 9167.8519 6720.9093 5105.9341 11160.3677 10213.9253 2909.5195 2783.5076 10374.0877 2224.8207 10728.978 6523.2733 6933.5655 3033.8458 3353.9674 5069.3637 2976.1716 11164.6829 110818588 ppx Phosphorus Polyphosphate degradation NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 74549.8179 24378.5026 8925.4513 18735.8675 5686.9487 7721.616 9085.021 5022.5373 59239.0567 47411.0255 10187.3756 326089.6098 18360.9882 13441.7262 10980.1746 35735.76 35735.76 10260.5425 18504.2976 21173.0113 9785.9224 21104.6886 20827.9469 10413.6063 7734.5806 21196.2057 13231.44 47684.3273 9413.2796 19874.7561 11633.8788 13437.6709 22126.0506 8607.8095 24439.9267 206685279 ppx Phosphorus Polyphosphate degradation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 61931.9881 440364.5954 13866.1099 77369.3994 23520.3156 46186.4942 74348.7815 30485.1635 116566.2616 49330.7214 46376.3788 802341.2645 38783.62 79758.1083 158277.2442 60094.2937 60094.2937 29572.989 98614.7616 50322.7366 44455.3409 91249.4146 44722.3763 36249.8528 66854.1289 90135.317 64549.1159 110004.9451 112000.8896 77332.3229 29319.8866 46817.0091 55406.0571 36740.9195 59763.4864 251844850 arsm Metal Homeostasis Arsenic Detoxification Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 20071.3594 2198240.1794 6072.7196 222313.3655 4792.2479 2286.9025 5596.4967 33367.804 20564.8374 154154.5999 7241.5278 4926.2782 4419.4171 4898.8119 4898.8119 37614.9815 128271.621 12019.4571 5730.5376 10578.4584 9507.346 44708.9765 64223.1943 6890.7158 10627.1705 88761.204 27230.6069 17972.0719 15818.6377 13365.1859 21934.2158 6559.1713 44328.362 374847000 badh Organic Remediation Aromatics Other aromatics Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 123876.6993 19833.0405 112385.9085 353214.2925 478288.0357 76546.3004 121272.4407 301031.4432 237115.6371 272416.0298 138922.4251 179686.3448 2554103.2756 208367.3243 236023.7882 223793.9214 184409.0081 184409.0081 74350.2455 593317.4558 98229.9356 153537.1614 345896.501 120541.6742 106335.5602 165705.3982 184383.0993 121251.2513 384491.1915 187461.6276 302776.5753 148648.6488 152766.9792 128016.1314 114240.5575 599659.3641 121590136 dsra Sulfur sulfite reduction NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 4539.326 1988.5494 3235.8742 4357.4007 2087.5046 3101.8308 5420.4296 398992676 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7363.6418 23901.3085 4712.1907 5974.95885 47741.6714 4891.6288 8703.4724 10626.9393 205417.4961 11474.3753 11979.2423 11826.9946 11826.9946 5251.5245 9382.90515 6282.2441 8948.0868 6505.5278 4231.8756 10257.6757 10445.7649 4353.25795 5103.662 402258484 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5731.444 9357.1865 6062.6751 6799.1489 4537.6148 5661.2173 7629.8321 3247.7597 160934.3905 4815.0415 11466.6875 16150.9756 4306.3887 4306.3887 6012.1777 14722.5835 9574.6769 6063.424 7208.0241 7313.1676 5146.9583 3677.3674 10495.2329 10518.9573 15389.7891 12243.9113 13218.5969 5052.3062 6036.3553 6737.3349 4919.6741 5523.3854 291541232 dsra Sulfur sulfite reduction NA Roseburia intestinalis XB6B4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 8509.9997 9232.7844 9124.2784 6627.203 5452.7104 5834.9137 9891.451 8702.3963 4349.1804 251328.8206 10713.3271 8626.8527 8280.7053 4723.5229 4723.5229 7269.4977 14934.1477 8914.9933 9660.3561 11487.1167 16385.8164 5377.7017 5226.0745 10384.5485 4654.6904 6082.9533 4679.7343 11092.6596 4237.7862 5333.7434 7174.5175 6094.1897 16529.1191 288348950 vgb Virulence Antibiotic resistance Degradation Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 16670.4577 11230.8345 12646.3663 63992.6179 5282.7363 12644.2923 13459.203 15243.3183 15707.0399 18268.7887 18600.7036 486648.8039 22330.9732 16363.6549 26136.4002 30349.9783 30349.9783 11215.1267 39251.3489 16227.2905 24892.3353 28611.0886 299470.5217 13703.6114 15795.5375 23309.429 17112.4454 66661.7597 75946.0041 26052.2771 18534.4779 23007.8927 21608.0623 7996.3187 62528.9117 302694727 mannanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 17711.3961 9964.5447 17650.5465 7198.9473 3880.0171 383756125 amyA Carbon Cycling Carbon degradation Starch Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 12657.0097 6419.025 2149.0421 4834.6589 6685.5986 8082.5004 41054.5983 11200.2599 154709.8854 22221.4983 6293.9195 5082.8733 5082.8733 12744.4304 11814.2099 10964.1827 30753.6639 60202.6003 85417.5575 6869.8611 4893.199 10214.1508 6772.5156 29030.5471 15097.1335 13260.9179 7904.935 14500.7754 10965.0919 9011.0395 14432.3261 385664631 catechol Organic Remediation Aromatics Other aromatics Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 17456.107 553816.3263 29209.78 10720.5834 5116.4808 9822.3394 5284.5933 4864.8191 6145.3637 10220.4006 5623.1859 212155.5773 6292.1256 9422.653 10200.7359 5580.0043 5580.0043 6831.6192 22759.5662 7633.9016 6637.5248 30663.3785 11400.0191 14763.1181 8214.8611 10557.5443 7456.2683 17961.5531 5536.9283 11708.2099 8183.824 7585.0116 15137.0779 8738.0498 20686.9739 340528563 exoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 16311.7635 14007.2703 11159.5918 12047.9218 5439.6092 26079.0316 39671.2684 12503.3175 30022.79 12047.1662 338842.918 14730.77 11887.4315 21454.5291 27827.4025 27827.4025 231306.5597 27136.0482 17634.216 36308.9116 25135.9989 14020.6389 11340.9468 13665.9513 105149.6232 16894.2751 62438.1935 34191.3446 23598.3278 11211.5167 18006.282 13230.4785 11397.0838 18866.1861 257054347 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 126577.7856 13408.0884 69913.7848 36879.6837 41495.0106 20588.4007 199608.6584 117640.709 53589.6166 83845.8442 99533.4903 63395.0315 2053820.7852 61435.6101 80666.7682 190430.7618 65377.7918 65377.7918 62991.907 81495.7918 53777.1603 54305.9583 161020.1776 69918.7587 62132.8313 52220.7802 133284.8321 46639.0928 128650.7203 510393.529 93230.8595 38089.9421 67204.4635 71290.9596 43870.8124 114357.3264 304406863 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 9216.9972 6279.7765 5370.4717 2767.8085 4317.8549 4725.7105 4329.7949 76116.3505 8993.92145 12575.9268 5692.0003 2471.7135 2471.7135 4161.4227 7663.1678 6294.65325 5692.08545 8055.69525 3263.15675 4510.7416 9279.2907 2803.7878 11941.08115 6951.5807 8206.6417 3313.8494 4091.24045 5693.3857 2477.79215 7665.7759 224607311 amyA Carbon Cycling Carbon degradation Starch Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 122499.1386 15198.036 783920.8395 297390.1741 35242.8684 11095.4042 59584.7067 127509.0704 17603.5039 49171.6237 38603.2294 30847.3786 802580.5267 516399.8921 52123.6843 41830.5981 40048.1529 40048.1529 29060.4494 54794.1926 28748.8502 43352.1139 42684.0616 44062.4087 26482.9563 21201.1441 45368.9579 19624.1125 75570.8028 36824.8509 62837.3095 19297.1315 31582.7729 32431.637 25336.1331 46077.0581 374426438 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6286.1708 7278.342 31823.7346 4840.1641 4823.1594 7719.2417 21667.8301 8884.1578 9030.5199 10801.3836 421367.7354 12353.7826 12324.9423 17797.8606 9279.2597 9279.2597 7668.6161 35188.3705 9838.6509 7804.3789 9413.0722 7879.8506 4959.5533 8314.4597 20954.9975 8569.2242 19319.1106 8025.2324 15811.4349 7748.1767 10708.1356 9386.3255 8210.2421 8450.8693 311032392 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5269.8699 4136.5361 2175.0435 3740.8668 5004.0026 105023.1794 4171.6471 4741.7664 6743.046 6021.2108 4677.1068 7572.3123 3684.4645 10848.8677 4160.4381 11917.4461 6846.7903 9012.4499 2554.9269 3472.9213 5869.8793 2547.8779 8670.859 158447917 amyA Carbon Cycling Carbon degradation Starch Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 5183.8674 4382.9672 2311.021 2543.9082 2947.0544 6189.2687 4272.68 16198.862 5055.4025 3986.7594 3986.7594 10402.8424 5900.9903 7223.5365 9923.904 3411.7196 7829.5625 4505.0899 8510.5745 16059.0191 1921.914 3853.2588 4422.5756 8527.0639 5964.6827 149143986 mer Metal Homeostasis Mercury Detoxification Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 152897.5871 94178.9864 45898.0152 38694.0787 54522.7259 52219.604 111146.1324 52236.3776 31481.4354 50013.8731 64559.7487 55923.8877 1021842.2446 72095.5439 109065.8706 100178.1672 60584.425 60584.425 42790.058 89070.5576 57666.0506 51145.8653 45931.7578 411811.4209 66105.5241 37807.929 93023.113 44334.0305 188605.6181 43326.8194 73981.1956 46893.9263 74096.7446 69767.1394 78279.6111 107230.5896 323364940 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 10200.4295 10892.4768 17565.0525 17322.3152 11181.2691 9914.4106 11112.8276 6765.5826 11228.9361 14173.4613 5124.2994 322317.9742 13103.6391 11754.6732 10548.6644 6292.8003 6292.8003 9963.9054 20113.4566 14786.337 13149.7022 15727.9715 23401.6489 6410.6725 6648.0291 23971.3269 7722.0007 28183.3622 13863.1096 23892.8248 8531.294 10026.6132 8175.2784 9109.0498 20963.1622 365970912 nasa Nitrogen Assimilatory N reduction NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 5099.4237 6062.5407 9409.407 3254.1096 5001.297 4644.5074 9155.9066 5442.069 6792.9882 3712.7459 3449.5351 6887.4494 7500.4108 1735.3708 4153.1508 3595.0342 6681.4654 139478615 mer Metal Homeostasis Mercury Detoxification uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 12627.4922 9292.3343 25347.8683 12775.5062 50696.7113 25807.8991 3549.8433 125079.461 15623.312 6698.7567 114229.0707 6348.3842 50613.4663 11805.6463 28434.8439 28434.8439 8162.459 16960.7465 10053.2839 5894.0476 11265.498 7255.6103 6734.475 11644.9347 17832.3022 7639.6964 23008.6923 13917.3442 14024.2299 4683.9726 14418.4076 12601.9508 8513.0346 15254.1454 288787549 icd Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 4083.9129 3576.2348 2681.2442 3033.9155 3899.4174 4958.3878 2308.301 115073.3795 5926.8615 5365.9055 3597.8524 10395.9644 5383.9531 6284.6389 7612.4674 4672.9552 3309.4365 7546.3371 2339.5302 10879.7133 5400.0418 6940.3719 2577.7814 3754.5823 4755.9111 2070.5229 4661.0917 351730178 urec Nitrogen Ammonification NA Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 18438.4941 11403.5022 11695.8457 20074.7281 10576.7337 57704.5216 86086.2686 15359.6893 14124.1809 123332.0649 64342.9466 879271.8865 20527.5098 46356.1148 37358.8262 30966.0235 30966.0235 47229.703 26193.9361 14030.6298 22964.7612 13617.8304 26438.5953 8600.6444 15878.1232 25428.899 15509.2241 93167.6828 15376.7749 40127.6028 20381.9695 18160.1976 45599.6459 38618.1065 26266.3186 298373670 amyA Carbon Cycling Carbon degradation Starch Bacteroidetes oral taxon 274 str. F0058 superkingdom:Bacteria;phylum:Bacteroidetes;species:Bacteroidetes oral taxon 274; 24510.0746 15783.1314 19706.2435 17720.7423 6010.48 32584.8259 12032.2952 9592.676 23220.9116 27035.2969 10815.4131 600220.7953 24885.5715 22095.4704 12453.5726 13603.1749 13603.1749 17699.0261 32635.6738 21258.4188 19749.1187 25012.0471 26151.7596 9875.4792 10679.0569 30659.6759 9053.4666 42551.4436 23754.3592 29408.593 9320.4777 13582.973 15884.2282 8942.5294 32491.5551 388469611 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 15195.1219 35103.5878 15320.1264 12021.3526 54736.3636 14549.627 31189.3295 18468.6388 16898.2571 212961.2108 12072.7284 29391.4887 13816.656 24443.618 24443.618 8942.5641 33275.4933 42496.6106 53989.5424 32556.5667 38985.739 14324.9697 44110.0141 16807.9128 23693.7258 33857.8256 32390.0596 30620.247 19427.2144 23561.2635 42880.4455 75883.6013 22186.8686 319743069 fccab Sulfur Sulfide Oxidation NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 4054.201 23491.873 16965.013 2332.2179 233703.2793 4289.247 4306.4274 6099.8458 6613.0438 12140.334 4131.2418 4131.2418 5101.3235 86567.5296 15869.461 16982.2909 12899.655 2123.2413 4124.6713 15878.9271 5047.6684 10129.5634 11489.1148 12125.5277 4427.4677 3508.376 6521.6581 5497.2205 342133243 ppx Phosphorus Polyphosphate degradation NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 5599.2607 5469.7291 2347.7095 2816.7877 2437.5723 54593.3899 5588.8626 3071.9257 114505.4517 8427.2166 4060.1892 5081.2779 2079.9586 2079.9586 3557.2677 8965.1231 4968.608 3602.6265 8115.2422 8237.5671 2927.7301 2764.9592 7979.9539 2227.2658 10209.7283 5978.8054 8008.6082 3167.3321 3363.6597 4252.901 2610.7511 11952.825 159045313 atzb Organic Remediation Herbicides related compound NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 139850.0626 38369.4506 1067576.7519 789092.0601 17859.9724 6238.6283 142916.4679 48967.1707 167014.763 32819.9268 92492.1518 68142.3216 5210832.1166 165866.2048 66459.4741 129941.3906 70461.8735 70461.8735 40528.7936 108323.3117 38954.5288 54560.809 448427.077 159961.1212 34859.7851 52825.9736 87940.6585 239513.222 151908.7987 73520.9355 50639.1019 34015.1008 38437.2952 50218.3186 34221.8954 726161.8523 149190072 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 8331.70485 6029.493 9779.43955 7938.07575 6341.26515 9834.5188 13063.13315 142942.6023 7063.7915 7579.83505 4586.51495 4586.51495 3334.5387 12176.1694 6437.3058 6457.34705 8843.4702 5558.5628 4624.6918 5261.83755 8603.4373 4177.1265 21453.38 10464.0292 9703.53395 3849.95255 4877.172 5835.05845 3609.3473 8043.3825 71735530 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 9673.7164 5349.9518 6795.5979 17244.1229 4732.3131 6537.1265 15473.4864 12767.635 8326.7532 12315.4028 7858.739 131044.6503 11768.0905 24830.9596 13880.7697 8949.7492 8949.7492 5516.5525 22730.0489 9661.1829 11157.6172 10923.664 39701.2705 15557.2798 7707.685 10529.6857 9668.6263 27944.2242 7657.1495 61575.5004 16392.2815 11433.4713 14680.9851 7704.4252 21381.914 126715555 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6386.2095 5730.8042 308957.3577 4081.2566 2419.4193 3636.8493 3836.0891 127293.071 4659.7442 2229.0387 2229.0387 4791.874 6987.5872 5351.8816 5483.5908 6475.1716 6351.2456 3571.9792 8675.0345 12789.9745 6128.1266 4195.1072 3300.8153 2580.2782 8408.3377 83025978 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 3978.8462 15654.9092 19783.1786 4897.1449 3293.1966 4703.3433 2736.2264 66402.1794 4387.4697 4608.26 7175.0208 2740.4819 2740.4819 3575.3946 8062.7653 8086.4836 3321.8718 3705.2766 12672.9897 2457.8173 10205.5554 13064.5355 11430.4346 5943.5364 5277.1443 5652.0374 4294.6667 312109877 pula Carbon Cycling Carbon degradation Starch Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6084.6973 6596.1204 3122.0886 3942.8317 2790.0877 85828.5418 8773.8452 7170.7643 5290.4401 4475.8908 21449.4978 4854.1713 2678.9999 7391.1719 9759.4681 3577.231 5220.929 1635.2364 3290.3262 4709.7498 4966.6366 330961174 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 86606.6986 51510.4276 9730.8682 4821.0614 3609.2934 2873.1321 5367.5098 4937.7612 2806.5237 65741.0382 37200.3754 4308.1375 1930.2415 1930.2415 3018.3414 8702.3685 6427.7729 4174.0318 10625.2184 13020.68 3003.0547 6425.3045 3234.7811 17734.0437 6534.1398 7195.0468 5876.3194 6833.9824 5959.482 2711.6441 7698.8824 209486846 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5409.679 7143.0361 5918.6296 8112.3914 6241.0842 5538.9361 3366.7014 17250.1988 12513.1612 5999.9897 241241.9389 16396.9511 15053.3399 12729.7175 12153.6887 12153.6887 5400.4908 12731.186 6654.5269 8136.0188 7467.7047 6357.4175 3797.9799 3625.3036 13324.9243 6685.3813 17060.8348 9356.2231 11877.4839 6009.7398 5439.4676 5562.4359 4177.9694 14085.2242 147886166 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 17451.257 43136.7636 10095.8245 302687718 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 180948.1914 107560.8174 35117.627 115767.2569 21119.7062 88068.9871 40696.6958 140032.1449 68874.8643 71918.2334 104269.8815 2305508.141 92071.0068 445464.9568 163162.3388 219341.7554 219341.7554 59573.7489 156155.0201 66325.6118 653093.5009 116252.2488 239631.9563 80135.1468 98370.2849 75036.119 127435.4534 232750.652 91344.6144 130512.5862 47039.2311 82290.6287 96023.637 81620.3201 326305.33 71747748 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma brucei superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma brucei; 14857.2915 95076.3967 4307.2525 6101.2494 4277.4077 28020.1571 6993.8786 5391.2002 90419.992 19052.2199 21320.2694 6062.6744 11224.8177 11224.8177 13620.7821 5297.7453 5234.2767 20711.5784 8388.7188 2622.7536 4246.7085 15952.2315 3746.3166 23630.1134 10162.435 22298.8221 3531.1123 7697.4857 7255.0612 11206.1324 12935.4842 334117264 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 59245.2943 10226.0465 6840.1336 8383.2145 9477.3408 12773.0089 18860.1782 9055.3641 8445.1893 243652.8828 14033.2634 13598.8853 3930.3919 6890.2395 6890.2395 7071.4559 25556.0709 13415.1822 9431.2103 16143.2747 13601.1633 9467.3752 10194.4068 14646.1793 8453.4313 27546.0001 8299.9462 15596.0019 7438.2625 9483.8721 9873.8804 8737.9616 13926.5821 227069653 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 6572.0381 38163.3542 4623.7832 4641.8964 5272.2016 3022.6301 3022.6301 4354.3921 3251.7762 13156.5126 169276 ligninase Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 83483.0585 5120.1849 18309.6426 28515.1363 8307.2297 4204.2607 10687.3756 8840.7364 39114.496 18238.6489 6657.065 192469.674 10341.431 20923.1839 9819.3732 12764.5141 12764.5141 9419.9578 10189.0423 15564.8409 8046.596 8499.0139 9533.5477 4876.5512 6831.7157 61774.3217 3926.6022 19303.761 10400.5326 15663.949 5959.4857 6403.6741 5816.5408 5854.1829 7917.5658 164456026 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9894.0735 7191.5293 8583.6744 5841.7524 9716.9742 124734.3826 7869.6328 5308.6057 7538.0212 9601.3563 9601.3563 3174.1221 9679.9983 5444.4693 8254.2878 10011.335 3863.4782 5046.5612 9752.8664 4008.527 15132.7539 7005.5096 10477.1956 4302.4496 5555.4186 4117.6414 3447.8359 189336147 mer Metal Homeostasis Mercury Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 7743.7884 3902.2069 14762.8729 2188.5621 4306.6079 4632.31 5062.32 100637.1394 5936.1949 34691.7407 7508.9213 7508.9213 3294.1424 28262.3906 29887.5838 10802.8382 3953.8732 3101.8857 18982.992 9192.232 2793.7813 15601.2164 8449.1241 6863.7089 2454.6656 5497.3923 6275.7146 3050.1281 7435.1371 349786206 rgh Carbon Cycling Carbon degradation Pectin Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 16071.6251 4818.7768 4046.7495 2331.4894 7872.8953 1962.0771 3309.5222 2801.3961 8095.713 325549158 poba Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 40093.5768 7192.9152 81118.1953 3228.8581 2974.0812 5986.5783 5976.6866 3984.8999 3398.0121 3398.0121 13997.6473 3986.5972 5848.5539 5087.687 5259.955 8462.1395 4358.8313 13775.1706 13001.7719 7340.5245 3057.0244 26470.0024 23488.6271 3648.5032 357224068 mer Metal Homeostasis Mercury Detoxification Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 27529.4984 2634949.4043 8004.0402 632407.8114 10440.4891 11174.7846 4291.6882 17185.3927 26817.149 9503.1329 278009.5405 15795.1083 11329.267 8839.5703 10804.9538 10804.9538 182203.2481 152069.9441 20569.3809 13640.7436 13948.7156 30993.9259 40859.0294 20491.5287 17872.3714 21692.2934 71350.9563 53735.2149 33790.8859 21175.6891 39085.2346 28853.6391 10485.1781 33521.0587 380731049 mannanase Carbon Cycling Carbon degradation Hemicellulose Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 14043.4511 30226.508 39375.1574 6425.6618 7037.7194 8136.8336 2973.01 6415.6089 10508.3263 12120.9871 212010.6809 7144.8232 8471.3352 10969.4075 5808.736 5808.736 6868.4229 16639.7586 11358.9701 6152.9752 12937.7962 6716.0803 4074.8491 7616.5464 16809.3966 4921.5074 24190.0725 16955.3616 17770.8479 7048.2437 9448.2877 5945.3584 5312.9412 171594.3699 118436437 arsc Metal Homeostasis Arsenic Detoxification Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 34329.4489 4299.1487 4632.0768 81124.8664 4270.4226 3526.2072 2598.8156 6620.8493 4698.8893 4254.4004 4494.4517 2158.6403 4844.0631 3725.8809 2290.857 4780.1034 151302361 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum luciae superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 8819.0713 3971.8185 6696.2706 4815.6254 7655.2291 58418.1876 9719.8701 6512.5874 3437.7671 3437.7671 9366.5106 3665.5751 2327.3041 3258.8672 1627.5076 2739.417 60476241 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 22799.1883 12695.3148 24126.3795 8152.7171 4481.064 11434.0555 15378.8538 15846.7412 18704.2041 21897.8005 13457.4773 363485.5864 32617.1914 23736.8164 51392.9669 39677.6585 39677.6585 11852.0995 84688.6523 18217.384 86849.138 27739.9604 20762.7198 10357.3611 142779.0412 49889.0987 9738.1711 51475.3018 17240.4338 27689.7034 12192.5879 14212.5669 18456.762 8507.6461 23669.7224 407789501 arylest Organic Remediation Aromatics Other aromatics Gallaecimonas xiamenensis 3-C-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Gallaecimonas;species:Gallaecimonas xiamenensis; 8639.3663 7763.6328 7082.559 4279.7278 4808.6382 5856.1112 3984.8425 8780.7736 5433.1315 5895.0617 155340.5854 8125.7561 8571.3692 5395.5186 3518.5195 3518.5195 9591.43 10849.5985 7272.6743 7916.6182 11827.0722 7757.8705 3458.6096 5212.5379 11125.0608 4044.8149 17612.8532 11937.5131 10372.7403 4432.5981 5643.4091 8826.3826 4836.1713 17152.5112 177840327 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 59670.3762 22108.0427 19230.9872 10884.5358 26439.8722 13953.3857 61638.1023 18442.7492 18597.3556 48216.8039 29783.1399 575116.7476 28780.1278 27987.4845 44744.4784 29238.8235 29238.8235 14822.2129 53891.0925 32540.9665 46938.2793 47873.914 130408.4029 19440.934 36362.5247 28905.5603 31361.905 269394.3985 20784.4563 50886.2142 21461.6369 23644.162 36669.3664 27260.4949 26066.7806 322437661 alginase Carbon Cycling Carbon degradation Alginate Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 33167.5151 16139.2615 14909.0299 33997.9725 17311.4091 49528.3404 12260.637 15877.3492 14549.3096 20574.3852 17654.3138 10427.2261 399634.2455 24582.5909 21444.9568 18937.1989 12304.8984 12304.8984 12752.135 29003.5434 19788.2063 27354.6022 31867.954 33059.74 12987.7075 11960.9828 25336.2169 12222.4057 39120.9011 25341.4069 29547.477 10326.1623 16445.9722 18774.21 14847.6421 45119.4067 288315928 endoglucanase Carbon Cycling Carbon degradation Cellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 15158.2193 11113.8507 10795.8539 16063.5109 9250.5724 13066.5628 17030.0857 8969.4019 11647.0525 15660.7517 6408.378 334513.0167 19761.0947 14079.8203 10024.7309 8567.3818 8567.3818 9908.4127 20738.3693 17771.4454 13917.5143 17530.0437 15172.8139 5562.8495 9161.6834 23910.2885 8869.5022 42983.3594 18694.6094 20138.2955 9889.7076 13578.1793 15880.4547 10206.8168 20808.4848 84684901 TIM Carbon Cycling Carbon fixation Calvin cycle Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 703246.2061 42830.083 306183.7724 106079.5098 390840.3125 434000.6825 311828.8662 329557.7392 193351.966 126277.1427 166885.3903 128994.7508 4173800.4419 231252.5099 234086.1471 507266.864 243435.0764 243435.0764 159126.5868 263594.4539 134524.8238 603621.128 333323.3165 138022.2363 140352.4931 158393.4467 232421.661 189969.6832 314656.6181 186473.0409 248490.1471 106670.6444 109615.8112 148295.935 79422.3439 197108.9331 254488753 nirb Nitrogen Assimilatory N reduction NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 18949.0519 17037.1715 43196.352 24808.4729 6854.5155 13069.505 65111.4368 14664.9953 27186.2605 20793.772 14292.1214 262253.6537 21859.4604 115439.5337 41793.6271 15403.4738 15403.4738 7896.2244 43400.8444 20305.8712 18660.2654 26400.1139 12214.7932 22587.2947 29857.6393 31234.7077 74451.9842 55061.2964 125727.4099 40901.3536 15254.3752 20053.1468 35549.5513 30281.6375 32396.1606 393719697 linb Organic Remediation Pesticides related compound NA Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 175408.0922 39062.6611 13626.3374 27473.4803 12956.7833 13615.9572 203789.1449 5240.7532 60293.0594 14594.0351 40755.1701 316658.5078 12507.5204 20225.2415 44608.0003 20472.5625 20472.5625 51287.6797 55509.4469 11616.7877 26345.3394 56268.1914 14684.771 17154.6757 28083.7049 20887.3642 10243.9904 107691.8042 43069.3998 41782.4089 9051.6702 15615.6811 18596.8398 17839.8747 27188.3398 118164360 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8812.0479 5569.871 3276.5048 6500.359 3534.1568 11884.2082 9806.3921 3933.8764 229043.8846 9181.384 8423.8214 4592.8898 1991.0091 1991.0091 6250.6297 12066.2045 11932.7181 9578.3666 37003.1154 11095.6401 4899.3425 4538.8549 45839.0267 9054.7657 18994.1786 8048.1785 12104.1665 5518.77 5974.6052 9751.072 4782.2289 13336.4315 37526188 xyla Carbon Cycling Carbon degradation Hemicellulose Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 5947.5385 356413826 pgk Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 20884.3239 11124.2252 12278.0842 23761.7523 17103.2593 5405.8892 33301.1783 18766.4251 44735.1435 17582.1378 17678.598 11696.9521 356537.6736 28550.6636 36945.3037 14220.1938 10987.5054 10987.5054 10168.7738 35573.6977 26148.8686 20231.9347 19354.1827 24897.6889 9032.5621 25744.3033 65455.5499 19612.7292 54131.4824 32910.7376 23087.322 18176.5005 11625.0067 20251.1495 13923.307 20192.3249 407300052 xylg Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor pacificus pht-3B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 9849.8764 6881.3093 7516.4438 6637.964 6895.3387 11120.5551 3346.5941 6330.0895 10389.7546 7325.1951 220599.9316 10642.3839 8538.4057 14418.7008 7317.7523 7317.7523 7171.5261 16337.94 9206.2862 14340.8784 15415.5471 12593.9625 4573.4016 5307.7963 13896.4846 9485.5602 18950.0163 6412.4249 11287.4049 13009.7994 8381.0809 7968.1177 4843.4568 14866.0944 291345361 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 44937.4484 55933.0661 27185.861 31426.2771 16586.1766 13760.0513 86155.4392 23289.5372 16724.4403 60468.8685 42932.5266 982653.3882 31981.5891 136852.9342 66919.0487 65031.0403 65031.0403 25938.7247 71894.6822 42798.2377 36465.0601 100361.0191 33631.5726 27694.8981 21722.3759 50747.4356 38710.853 92254.8768 53347.606 53336.1032 33171.1357 56791.8863 44560.2568 27719.5159 104046.6065 297161521 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 49288.0921 117432.1816 40306.5386 9405.383 8846.5749 58335.2223 46904.4715 27824.8609 46996.1747 58275.619 121024.2159 1558607.1963 40104.3944 30977.5326 21416.5302 15771.1593 15771.1593 15781.178 55635.9321 24425.2667 193889.8547 91518.6644 14091.3124 13235.676 12531.2624 50215.8702 55343.2657 52805.3097 66496.8941 50396.8668 39279.036 58811.7895 29503.3187 12325.7392 26036.3494 26278694 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9486.9846 16774.8965 10057.1162 4483.5526 7654.5665 5113.7114 44673.0664 17284.1446 92928.3136 26227.6589 33708.8384 12554.7636 17690.4287 17690.4287 4484.104 33046.3101 11594.3026 7551.6717 8927.4033 6003.4232 6133.5108 15446.8346 8939.1058 85388.9767 10590.0808 10010.8199 5598.8282 9551.5757 19843.5728 2996.163 15428.6505 338822115 poba Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 32433.4529 16523.4454 20205.1726 24309.6547 5042.834 13480.851 31074.4258 41998.0612 32204.3631 25672.9571 13750.9977 417120.5473 48975.6201 27157.4417 17370.9221 20536.9718 20536.9718 11852.5205 34853.323 27586.7495 26768.8236 26884.7339 31727.0689 18412.9337 19778.0661 48530.6535 14489.0027 51970.7737 27191.4248 51015.5169 12398.155 15998.97 14687.6833 14744.1525 29930.4398 320332969 mannanase Carbon Cycling Carbon degradation Hemicellulose Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 171120.7017 22055.729 106376.0117 115403.8511 106147.9383 892884.8033 296742.0721 234035.0227 81693.1328 83858.575 153346.3311 121914.8325 1560267.9413 199638.7722 63894.0958 306256.8621 155775.4204 155775.4204 87854.5799 140333.2062 93754.2053 116046.1726 127185.372 140313.9695 82137.6353 95450.6603 89442.9564 143332.2349 327453.896 102413.3657 112159.7792 98888.2401 180737.9307 335173.1987 64506.4787 184834.8466 170076957 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4593.5141 12146.1406 20326.1797 6307.6276 3247.2102 4755.5842 4652.3837 3333.247 114794.8412 5308.0759 6794.9288 16498.6656 6531.267 6531.267 3892.2835 5977.3554 5783.023 7325.8629 2142.7699 8169.0434 12005.2187 2344.9206 10950.3241 8837.2335 9997.9016 3051.8753 4714.8536 3472.3281 2160.7942 4562.943 259652643 TIM Carbon Cycling Carbon fixation Calvin cycle Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 10614.2047 7614.7558 5623.263 2286.0698 8347.9179 4368.4882 3721.5268 188601.0534 5833.5494 58004.8288 6133.1122 4746.7399 4647.8944 11958.7477 11958.7477 3253.9844 17390.2283 4875.587 82737.4637 10155.4389 12234.4674 23809.202 10352.0712 6710.1369 24857.3614 3515.6056 10667.4882 5472.6618 7752.2539 6364.8102 5774.6977 46867.8562 261286652 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 20056.1141 8548.8963 11954.5274 8986.9659 5470.469 15813.5665 21690.1799 17427.3907 19071.2912 9836.3884 12224.8597 178183.0449 15940.3831 154488.3926 24440.7901 35139.5852 35139.5852 7504.2868 20242.4496 13261.881 22389.3504 24208.781 60720.4617 8898.2008 5830.6848 13747.1445 15381.0269 40873.2131 10631.6759 28764.2623 6117.506 14860.1868 10500.0584 5799.7749 51362.1295 119358354 ppx Phosphorus Polyphosphate degradation NA Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 4080.2544 1946.4177 3970.1159 1993.3175 1993.3175 2905.7685 5801.106 3152.9621 2580.6315 1725.1016 2745.4469 2059.8866 357590695 pcag Organic Remediation Aromatics Other aromatics Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 9200.6385 5902.7658 13882.3579 25266.6179 7196.2175 3346.6497 5432.1768 2864.6169 8236.1285 24613.5374 16985.0765 176033.9546 8487.2558 9099.9417 10904.2638 6487.3698 6487.3698 5120.4957 14665.1586 11075.9277 7422.0827 19759.7083 4907.5289 6562.0694 10125.5977 14643.0413 3814.4841 16836.1377 14345.6628 48880.2373 4035.1368 8253.8959 6593.4841 4022.1141 32545.6145 282899523 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 13878.5041 92244.0649 9372.5792 54145.744 5839.5935 21002.234 2335.7063 10947.6442 13156.7814 8886.6329 307011.0131 43299.5584 13017.3988 24196.8552 11418.2264 11418.2264 74815.6186 44172.7512 38803.1647 14547.6312 11687.0997 17571.8358 8425.3579 7375.4107 31356.0584 14077.8482 44659.3254 22571.6675 15473.8418 5058.0446 11662.3351 11345.5652 3372.9876 11651.7205 94471123 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16413.9137 6577.562 37983.0219 14365.3493 32273.069 5903.0422 4152.1578 8269.9734 13604.9668 7308.8784 320756.3392 20006.4703 7227.6034 14251.5478 14587.973 14587.973 3903.0614 11925.3234 7687.0546 8562.5213 11183.1719 59809.0576 4307.3365 13105.1947 9337.2971 8159.3266 26774.5975 10291.628 12283.9028 4990.8065 12595.0155 6989.4833 4570.6466 12351.7344 334132837 catechol_b Organic Remediation Aromatics Other aromatics Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 122363.1225 31429.2182 38182.8886 245568.1135 15235.9442 21018.4143 38435.3248 55951.5807 176514.7 34561.7014 64370.3813 53664.7031 876694.2081 76644.8891 90133.3637 102760.9841 95571.8684 95571.8684 25898.7413 58273.6884 45562.3375 54302.3481 160618.4134 84401.8012 33921.7034 50571.3007 39230.1285 57604.4943 91388.7658 123224.3509 71853.266 55301.4902 46761.9818 76337.4276 25883.8922 209891.0638 365860860 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15148.8664 28626.0629 12801.668 3365.414 8601.3703 2284.7342 3155.7564 29191.6029 14064.6679 243261.4331 19100.5469 6571.3931 13390.6745 10190.85 10190.85 10292.1154 9681.5903 4609.0175 4853.5361 7364.3458 16683.0872 5223.3146 8867.4086 15102.2472 7959.5765 17364.4475 14266.914 13726.9684 2959.6853 6125.9293 12496.6757 5132.7721 4417.7941 219678276 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 22352.1383 34273.0729 9724.5311 11140.1091 6179.0004 12196.0115 16004.2092 11950.3932 19874.9508 58276.4047 19954.3706 312779.6716 19055.4249 15523.603 16541.4675 8792.527 8792.527 18062.6969 45501.3828 13053.3278 21882.2616 104975.9699 25181.814 13584.2851 13065.0709 20868.4879 13799.1162 65657.0829 12319.5263 24598.6606 13044.3947 25560.4208 14230.6545 18002.403 14006.2407 294865314 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 5626.4262 6950.6868 3237.8015 2418.8495 4082.208 93793.0208 5371.4725 4926.2652 1827.923 1827.923 12724.3613 13953.1079 5466.936 6326.9163 5871.9757 9034.704 2819.3935 2780.9065 7413.9478 2894.8573 33011.2153 7559.2195 2599.0293 4472.3498 4713.6271 3057.5252 19699.6537 119695017 pcpb Organic Remediation Herbicides related compound NA Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8072.711 4645.5627 18478.3272 21096.7764 3202.7143 2421.523 4050.1198 8437.226 4862.3547 2977.1921 130113.7897 11939.3 19730.5572 8866.4794 11130.0081 11130.0081 3395.9728 12144.8635 8468.0611 4917.6113 28333.0057 6808.8824 4553.3912 11994.4083 4633.8609 7523.2372 4071.0887 7981.4435 15112.3141 8980.2507 8715.6534 7671.0602 4479.7905 342826822 ppx Phosphorus Polyphosphate degradation NA Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 12713.4955 15928.1569 20659.6874 36406.7764 15124.9727 9319.7604 20410.7684 3983.8639 12745.563 16331.1439 17204.4095 239219.062 21305.9176 12873.5649 6815.8696 8176.1819 8176.1819 10054.3488 17336.8295 17679.4818 9434.1078 6698.7021 15980.7044 5409.1998 8953.0487 23233.0867 11490.0268 71502.5675 142255.4029 25295.9462 9287.514 9950.2846 29383.1744 7181.2225 11930.4591 302546012 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 33587.1852 12372.3 12327.5621 20159.1567 57745.4838 25978.9056 10855.842 43767.6554 55710.9667 16145.7594 34599.7849 36973.0806 528698.1118 22430.2185 29302.5967 109660.0043 28603.7301 28603.7301 16624.5273 82229.9918 20507.4093 19620.111 59716.8807 41487.9388 12345.5749 18114.912 76792.4767 39187.0083 75247.9615 92577.0216 46968.1615 53116.9266 50008.0053 30469.7799 27664.8426 26423.3474 262184687 cutinase Carbon Cycling Carbon degradation Cutin Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 4784.8661 2471.8704 4009.5776 3519.32 2108.4827 2108.4827 5407.5817 9239.8603 2514.4395 3687.2953 162568577 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 13976.6585 48036.8082 5729.2785 6128.1786 2077.4987 12231.7227 3975.8026 119963.3648 8471.8083 9749.1377 39398.1533 39398.1533 3619.119 7486.3647 3947.4259 5921.8456 4425.468 2109.0008 5818.3945 10188.1091 4043.5899 12267.2615 5453.1061 8849.0701 5039.9921 5670.5831 7444.334 1938.6771 11935.5552 99081812 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 40860.9298 8706.1955 10663.4379 12201.2368 11416.0844 5396.0684 31557.0839 154699.0714 7107.46 5830.3242 18899.0276 10497.7532 10497.7532 2673.751 24950.6435 6296.3125 554935.1955 64574.4901 16317.207 6733.1728 47725.0934 15448.931 6149.8894 11716.9185 5813.337 4611.1394 24805.588 10494.755 20502031 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4554.2053 6877.9606 6070.6087 3048.371 2481.0189 3185.994 94471161 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26546.9473 10505.5252 14326.3457 454595.1207 28370.0601 2842.6325 3540.6977 10882.3547 5000.7318 65707.7788 9085.7424 11391.751 7448.7794 4916.6829 4916.6829 3348.6042 8925.0382 5110.2598 6172.0631 17941.0418 3967.9011 3305.5817 2670.8741 7236.8225 3456.2407 11350.5286 8340.7014 9385.4461 1658.4468 3535.1628 7489.0052 5598.9187 18258.6795 295633908 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber; 5268.2406 3699.4864 3006.6923 5727.9663 62998.3997 15296.4443 2396.0866 2396.0866 7146.1171 8781.8893 4683.5017 8135.4669 5982.2902 4142.6213 7981.2044 2641.992 11480.3792 5518.1869 7004.9786 2422.1583 4950.4309 4538.5024 2269.4335 6422.6201 62003565 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9555.9693 4062.9659 18322.7025 4043.321 7136.2865 2803.7081 4670.5495 3674.5048 3725.4758 94232.5799 6180.3062 4431.5149 6075.1225 7299.3274 7299.3274 4219.8788 11349.4706 8049.0416 6310.2589 5512.143 6303.263 4564.4123 4445.538 14732.4994 5880.3675 19745.2225 4960.2137 10876.0669 3379.0193 6095.5684 4309.9922 4218.5824 10143.793 221735522 PRI Carbon Cycling Carbon fixation Calvin cycle Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 12492.206 9877.4552 44755.1069 12442.3651 5886.5698 8814.1895 30234.8141 171078.8509 6707.1983 7437.8632 4757.7934 6965.1127 6965.1127 4240.2826 20540.4408 7084.792 8568.6031 63841.8871 5746.9745 7605.0788 5173.6373 11073.6787 4876.3313 41338.2371 9554.0674 11313.2689 5365.73 7613.7237 7620.1169 5831.0284 11200.9243 309394190 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 25944.4338 6652.3596 52402.6799 2247711.1431 7594.2667 28063.2573 87914.7475 3044.825 75499.5219 10353.6555 38905.5355 841219.2525 19147.029 40606.6664 13622.9037 32225.6049 32225.6049 21290.9705 45445.4395 26004.9068 126648.7634 25420.374 9793.8273 10189.3822 17524.1184 29694.3244 13781.9907 24863.4224 17968.5287 65235.4065 27942.9268 16569.8771 64082.1784 26991.0822 72283.8343 299133729 ppx Phosphorus Polyphosphate degradation NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 10271.9151 13110.788 10818.1485 7549.9389 10675.6566 7812.6305 6143.1816 5068.8513 11159.5639 3430.5682 161920.1349 14613.3916 9404.8513 6214.2502 3948.5095 3948.5095 6035.5336 16206.0671 10616.1427 9595.2873 8694.485 10437.9421 3715.7208 3779.526 11270.1269 5782.202 21565.7507 15164.8814 13045.4521 9138.2761 6879.2671 6701.2827 8229.4141 12448.5201 170077910 mer Metal Homeostasis Mercury Detoxification Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6339.0316 6444.6476 8480.4073 67749.8932 14485.9703 2370.9562 6304.5784 5484.0911 6506.5528 4632.9677 208221.9477 9557.4002 15328.0997 20745.3736 10042.1635 10042.1635 2961.3385 6774.8575 4669.9245 2761.0787 23262.8853 14955.265 4459.0262 17778.7151 13374.4163 12616.5344 6683.6145 4854.7136 4145.9685 2405.2462 194348647 alginase Carbon Cycling Carbon degradation Alginate Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 57199.03 101791.7904 53345.845 550872.3784 134581.5668 16556.4019 121382.5109 37211.8631 37294.2954 117201.9306 58990.9635 2103397.1043 71116.7314 73680.0926 89498.6237 72024.5859 72024.5859 276954.8156 53354.2187 67712.2907 343373.3718 50563.186 53384.08 24304.1385 34554.2836 76602.9487 28946.8367 107625.7829 62266.0349 118048.7257 34721.8559 56041.0445 44426.4369 12985.0733 33921.0617 139003150 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 31091.3086 16054.9549 20270.9791 58656.3777 15584.2078 24102.7908 108886.6183 36226.334 33252.7358 31726.8749 611545.1917 23008.8606 107917.8298 23302.1613 31598.889 31598.889 12503.5516 34859.6645 62185.7851 28578.4958 61888.0757 40493.1861 12528.2574 18631.5217 33493.6466 66535.006 74779.0518 27270.5951 24270.4086 32717.0234 29980.8507 26663.1688 117665.7956 36976.6753 110592173 nirs Nitrogen Denitrification NA uncultured organism 7739.2953 7352.071 5711.7214 4902.7039 5933.4834 7018.46 8523.4551 3498.2437 227232.8047 8562.355 6778.8644 4414.0304 3039.5971 3039.5971 5641.4587 12523.3985 10642.3254 7793.2563 10043.9964 9587.3002 4514.7482 6043.4501 14136.4394 6084.5938 16697.5064 12511.972 11799.6107 7888.8087 9763.8899 7432.2757 6354.7238 22662.9873 374095537 one_ring_23diox Organic Remediation Aromatics Other aromatics Gordonia sp. QH-11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 50255.5205 2518164.4314 8332.1917 67636.1694 20545.0283 10402.9641 118301.7161 13404.4335 9292.5786 18918.3549 7425.5368 389252.7994 11649.4226 12450.8388 40179.0024 7220.0184 7220.0184 35088.3777 121798.387 18492.254 20317.8837 18290.724 30311.8668 8696.1719 11030.7217 20715.8191 11909.8417 77763.5099 31899.9453 25739.5483 23713.7993 14414.9538 16081.2212 7747.1673 23429.0348 302580062 tktA Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7783.8084 5704.8622 8033.8806 4009.133 3202.9274 4518.352 9606.8913 18359.531 431017.7872 5209.6347 23822.9773 3465.8749 3465.8749 4971.8136 7004.8789 4823.5431 4130.2609 4610.448 4311.0356 3819.8984 13842.5251 6725.1567 12304.8815 4181.519 9344.261 7266.1042 4115.8529 83744449 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 25842.8596 13299.3216 6073.8607 9875.8576 11046.6391 43035.576 10866.4814 19838.6212 7884.0057 177469.4919 16908.9734 11636.3523 38189.9039 9627.5747 9627.5747 11654.5629 19959.2135 10162.0073 14459.1939 21768.1617 15683.2154 9070.7271 16564.833 15304.7038 12717.3959 28471.3563 15659.3457 17713.7282 10067.865 12381.8501 11761.0324 8410.2102 52025.7078 118435542 atzb Organic Remediation Herbicides related compound NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 11066.92585 15975.60455 8438.10255 11368.98605 5949.70325 8690.1091 2753.01645 12265.71275 14952.18705 7184.5386 257829.1791 14668.4327 12493.81825 11080.6715 8609.08425 8609.08425 8967.80335 19005.482 14404.0348 16331.2059 12676.85355 8765.464 5968.98935 6763.5748 17415.84165 6632.8888 34015.64705 8855.7425 16193.43275 11353.9373 9065.3937 9725.5704 6475.95175 13019.7991 214037379 dmdA Sulfur DMSP degradation NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5255.0803 5269.5507 6396.6804 8267.1433 14835.9025 4769.7504 4757.8014 2551.3797 8078.0275 6951.2203 3310.9077 107754.1534 4909.69 5495.7709 9170.6413 5039.7757 5039.7757 8193.5127 6878.0889 4327.3535 4585.3849 5073.474 6330.5316 2024.9642 5021.9296 6522.7556 3412.6926 11311.6756 8246.1352 3691.5016 3282.3183 3997.2072 2538.0763 5654.871 311067189 rgl Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 12506.0999 3122.0729 2971.7669 3975.9303 6250.812 6835.0562 3352.6057 2933.8964 1655.0656 3053.3182 3033.1188 298290904 PRI Carbon Cycling Carbon fixation Calvin cycle Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 167005.0425 74186.6398 18138.897 162445.1977 25253.5061 47157.511 180991.1808 139072.3418 81349.4042 139988.3713 131826.4505 3972790.6751 171614.2674 122666.757 263683.7834 128990.8975 128990.8975 106342.37 129352.9525 67076.0365 208505.7581 263229.0489 231431.2474 97878.2065 178296.8258 200392.9661 151364.9317 563249.5764 314880.0917 188896.0541 94369.4904 126145.4489 210215.5468 82767.312 178532.9162 118655574 arsc Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 135178.3691 982804.6595 39688.9931 102121.8087 49593.5297 46771.7791 110077.2686 161332.4812 96989.1281 80222.2166 78118.3956 58459.6758 1120963.1119 93982.1254 39802.9066 88084.9702 49086.8529 49086.8529 116314.7385 124377.318 29681.6115 118187.1655 123647.8814 84879.2368 41053.4681 57693.4873 75882.3697 76147.3197 168607.0887 48215.1573 56875.3083 41463.463 64977.5488 42921.5383 64527.9614 87115.135 94470979 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6420.942 6133.5524 2824.017 2843.8677 5253.1308 11102.0538 4200.969 147291.2588 6911.5896 6183.8831 2377.3976 2377.3976 4218.9918 11531.8228 8848.9002 6696.2576 8170.8175 3166.2074 3926.3137 9838.737 2806.0099 15014.2414 10012.632 9731.1461 2908.4756 5136.9908 4728.7147 3324.9902 9997.1932 392530619 amyA Carbon Cycling Carbon degradation Starch Carnobacterium maltaromaticum ATCC 35586 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium;species:Carnobacterium maltaromaticum; 4733.2462 4821.9811 6342.5897 34977.1204 4913.647 3162.8692 2285.4985 5834.512 6544.4836 22982.6177 2959.5912 2959.5912 3158.1384 6836.6218 4627.944 5657.2531 6691.6757 2801.4317 6553.2559 2910.8287 15445.0337 8914.7467 4684.0212 2956.6068 3521.027 359767201 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 40812.0974 9835.1962 29207.3562 3216119.0313 10106.263 14434.0462 20272.7164 8246.4465 23035.0094 192362.3928 18205.9709 646120.4951 31508.4507 20338.5176 22130.1696 24374.4704 24374.4704 35409.9291 34533.8033 24164.4689 22627.8108 34429.2556 31604.9519 25286.7712 50310.3278 36950.9585 25877.946 56857.9772 74136.8983 32064.9446 20471.7458 59541.1231 42799.605 20365.4495 26114.3943 225047243 atza Organic Remediation Herbicides related compound NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 49980.4479 22791.3399 16291.9967 23169.15 15068.0601 30233.7135 12547.4754 22984.4762 57865.965 20535.836 345637.3086 31987.8375 29689.2727 37584.8418 16582.5037 16582.5037 22020.5398 53380.0196 24763.9737 179072.8449 59494.7456 31156.0133 59489.8652 22928.7564 25731.0252 17314.2322 78033.1623 53489.4318 43909.116 18492.5938 36248.191 38072.6774 26287.3555 50728.5367 339719871 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15250.5721 6356.2558 27309.7093 5654.9783 8603.849 9247.075 16632.2737 12277.7134 213153.8882 5191.4995 14217.5903 11139.3004 8785.6148 8785.6148 6181.8103 22374.7517 6857.5382 17100.4523 20638.5699 5977.2635 5050.5185 8550.356 10123.2106 18752.6851 29257.1214 35229.9906 14075.2283 6320.2288 13502.7977 14595.3856 19307.153 67409.6083 300534032 ppx Phosphorus Polyphosphate degradation NA Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 11331.6406 23291.8163 21850.4566 12636.905 5994.6354 5155.3978 6155.2491 89279.6938 3961.466 6421.0245 10746.0686 5316.64 5316.64 2956.2898 6723.8181 23188.8983 5185.081 4048.7023 3061.1652 5596.4016 10942.9061 3982.6423 9380.1524 10213.2262 8095.4526 4515.3214 5317.3521 7267.801 13586.5058 340777834 PRI Carbon Cycling Carbon fixation Calvin cycle Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 25006.9125 9308.421 27926.2824 12135.513 18519.9211 24815.8791 16645.166 11562.4945 16256.1727 238672.9364 17072.9377 17271.5723 21238.256 9422.852 9422.852 10399.0049 20645.7713 15042.1406 15379.8479 10226.5588 17504.6562 10422.5583 10163.2046 17460.8951 14889.1789 42971.4093 9873.6556 20294.2057 9951.5101 9184.0074 18246.2915 8354.4566 15454.8686 359783689 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 43188.8549 13500.6639 4388.6814 76535.5102 3932.0318 10131.2697 5803.0922 16102.8908 36870.2309 8681.884 174012.5262 9597.5354 24183.6089 8607.5091 9844.353 9844.353 9461.4015 21696.0697 11107.4597 10443.3981 28605.0966 567611.0956 9631.825 10526.3651 12818.9582 10074.6027 33440.457 19994.979 17431.1516 5247.4448 10202.4397 16017.8517 7279.6279 13152.5531 319755696 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 21335.6861 5564.4085 4286.186 33952.5691 4578.162 9526.1418 8514.744 107201.099 4641.0517 7921.2241 7599.5945 9679.4094 9679.4094 5316.9177 100288.9074 8897.1864 8008.7219 12671.2957 8197.4596 4354.3254 7529.4024 13200.2069 20603.8435 17931.6577 20018.283 43179.1901 3848.2249 12833.7809 10468.9255 11527.689 8211.1899 289549223 ccl Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 59575.8328 27115.6954 22506.0965 9863.6543 565993.7583 117391.5268 94002.2579 14028.2081 16382.0194 122504.2166 18328.1524 326128.3965 23826.9452 37851.9327 16998.3847 19199.2844 19199.2844 9831.8168 263292.7158 21535.2086 66873.7894 186788.1432 180803.516 67033.1818 43268.233 36562.9344 35425.0902 48146.4563 27031.1545 32942.9 25715.2634 37559.9985 20788.6688 16110.2413 67663.1347 347309296 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7992.2286 5718.9873 6009.5133 3295.5447 3652.5775 6735.196 35728.3546 6975.2905 15126.7608 11291.9864 4150.3147 5442.5144 5442.5144 7659.7657 14105.6125 14539.3094 5900.479 5536.6325 3519.9543 5580.7325 8159.245 3221.0234 18451.8037 11084.6541 21742.5454 3870.8714 10000.818 5382.3503 3283.3247 9056.7675 333117036 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 121668.8204 18936.4258 249834.8192 49991.532 25197.7515 14297.3656 60957.2018 78517.2103 90542.6957 100561.7863 76525.7573 92839.8243 3289247.5177 129508.5206 91317.5569 81899.4714 154637.0454 154637.0454 51565.0794 122035.774 102169.9227 122276.8582 86769.4151 189498.474 51678.94 69968.0466 70988.715 58305.6868 167405.8755 105909.8472 87927.8861 126462.2138 64351.6574 105943.1177 59007.2056 126764.43 118172952 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 18857.4244 32748.4004 8193.2301 10176.3946 23342.366 26642.0283 9901.0384 9275.9767 16021.5097 21836.6301 13546.1117 327659.298 30166.9839 19231.7428 25560.3207 15359.2479 15359.2479 20615.1937 23977.6888 21457.3651 40381.0612 32908.539 29505.1348 17757.9887 17744.9676 33647.9316 18256.3772 44480.5567 27091.0276 38281.0587 11343.1066 14342.6148 25995.638 11758.671 27086.8775 169242378 nagg Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 63723.1501 148302.6287 34914.9415 353868.3535 19331.9763 20790.4345 46352.4556 12904.6021 23442.8876 34707.1741 44533.9742 499870.1661 53815.6757 29668.7082 50726.2541 36113.322 36113.322 24758.3472 95451.8108 27804.92 37878.6011 114968.7791 41471.4555 70182.9049 27251.4519 35679.2511 200904.0741 226866.0273 99245.8148 35055.8305 29552.9705 68786.1217 45577.1548 30574.0792 68520.2299 149915910 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 81867.1306 16117.9598 35448.2505 17128.8708 7763.9974 5798.4336 186928.7761 60853.6408 45178.2233 23208.0746 43322.1615 27510.1199 7566550.3712 27096.7349 37828.1312 45077.7234 93182.6915 93182.6915 26104.1557 108794.4707 39487.4615 54331.3471 128188.2417 49693.7068 30225.8193 20101.9745 59017.9626 102474.1881 81487.3964 22628.7456 53405.4413 34858.2433 32732.3086 44909.4588 33296.2878 85756.5147 342316456 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6411.9482 4400.9926 3159.6981 3159.6981 7847.5803 6797.6451 10037.1386 37521000 amyA Carbon Cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 46347.3847 9725.2601 22254.7263 14139.3026 13392.1911 9153.1117 12223.4232 17856.5721 16833.0801 15399.0981 326237.5727 21608.7119 99100.6381 35501.6641 40553.3415 40553.3415 15982.744 37446.0978 25353.7637 66884.8137 23052.0348 20455.3591 10775.6672 17664.7794 25067.3862 18176.7429 80043.9778 21530.36 24600.1058 9017.1135 15017.9669 32054.4486 14276.6601 29299.5404 347759984 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 31352.3492 10333.6625 13015.1352 7954.7144 4446.5877 10163.3746 2876.6482 14433.3578 10950.2547 7778.9143 188241.6079 8846.0167 13995.0639 5825.0715 3677.1811 3677.1811 5310.8298 12848.6339 19584.4917 6029.9733 13794.0199 8154.8513 6777.4902 6327.0597 27036.4442 4624.6014 17239.1153 6119.1915 48867.7686 14233.1548 9019.3079 11736.3915 20446.2287 9418.6541 392722232 catechol Organic Remediation Aromatics Other aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 74400.6806 12631.0808 16624.3902 7101.7678 8393.3685 22134.3013 239820.3984 32277.9468 90195.6779 23265.1858 276288.0247 19424.799 29433.9179 43329.8297 28463.3192 28463.3192 15967.8309 50914.6578 10336.8215 48264.2588 34864.334 40417.3722 21988.1752 38398.8131 20950.2589 11978.6968 220104.9724 24900.0181 72093.0009 12533.8188 16777.2543 28711.473 26247.1005 15297.0077 111021875 atza Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4708.5168 4673.7485 2576.8831 4745.4424 3095.966 3625.2411 4577.3348 4126.5153 20965.6057 7006.4822 7006.4822 2942.9648 8398.5701 11603.0932 4595.8395 5388.6352 3844.4282 2698.3409 5095.1423 7442.7723 4044.286 6593.8704 3748.3658 3558.7469 2974.2123 2218.0255 7466.8203 254383649 ben_bcla virulence NA NA Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7096.6901 8599.0604 8247.3368 34342.8136 10237.989 7133.3279 13179.5241 3020.4763 4301.6881 8468.3223 14949.0521 166597.9872 10141.4666 10907.2936 118353.5662 7043.7445 7043.7445 6678.7614 23395.6036 29039.1247 7175.199 8239.9194 7165.5457 2234.8405 26560.3258 14444.4623 2854.366 27621.305 19030.9195 22787.339 2745.0797 14400.3927 10022.0013 2883.1062 8966.0358 37924855 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 18194.7353 17021.8933 18412.5006 38600.0893 4674.0111 19792.6781 30866.1634 35039.5792 53482.8763 124534.6678 62446.6007 752008.3602 24092.2301 20969.3112 42181.7793 37234.2411 37234.2411 10064.554 35613.1831 17747.7208 27128.4429 34882.7606 18701.0971 22927.4299 25031.7765 22680.7869 14687.5276 48026.9508 47869.2929 24791.7497 17944.7955 28021.0345 29667.8642 15866.0898 28939.0744 334364886 cda Carbon Cycling Carbon degradation Starch Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 99299.9226 10816.5615 37267.14 40930.3862 298381.0245 36346.1988 57097.9921 182484.2965 107527.8564 79699.5699 333621.7563 98226.259 1326146.8281 77587.0282 111070.416 157234.7897 103232.8156 103232.8156 61986.4896 139378.6451 140647.0243 223532.1596 357300.0306 180560.5992 71048.6721 77139.3159 82349.4111 294605.2444 290427.6148 107509.3514 159276.3149 96268.8885 113620.0626 142759.3861 78712.4797 137868.2591 118616210 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 25137.9069 15610.8052 5059.0338 20027.845 5788.5402 3010.9161 5921.6348 4910.4672 8438.4283 90262.0617 5178.189 5748.8541 4147.5444 2791.3645 2791.3645 4717.0339 7057.9288 5252.861 5555.91 5897.6176 17500.7716 3228.5538 3699.5647 8430.8407 4073.6126 11410.9081 5813.6876 8972.5 3975.0678 4591.0394 5087.3339 3870.4608 6474.0991 380773685 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 16647.2775 5521.2853 6973.1132 28210.0341 4656.3801 11662.5843 14647.7765 7714.0635 50316.6529 14293.0573 12839.724 104378.8753 11576.5783 15581.004 18494.9665 31160.9805 31160.9805 4902.4301 16027.8197 8432.1533 15502.0146 5681.0908 17653.6897 6451.1783 8576.5315 29284.7575 7677.0664 31094.9894 11186.9448 13541.1381 7492.0568 9058.2699 5648.1385 7947.376 8219.4931 115422350 catechol_b Organic Remediation Aromatics Other aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 4241.4006 8474.2554 9816.1279 5235.5513 5606.0333 3297.2886 4455.4377 6759.0892 5396.2223 2713.1046 98203.6503 3777.2689 4205.5802 2015.3261 2015.3261 7835.9424 12136.5774 6835.2354 5892.4248 12260.2182 20661.6226 7257.3805 6342.6781 10167.1159 6049.8185 7071.7529 2845.8208 4665.1877 14779.973 3462.7809 9916.5171 212540702 phospholipase_B_fungi virulence degradation NA Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 13296.8011 24210.7703 8406.6789 8569.8851 11571.9341 8712.9628 7597.6302 4894.272 11832.5423 11947.013 8893.2181 5209.3627 184250.8853 11541.9154 12840.0469 6947.4626 24768.4017 24768.4017 7636.7407 11793.0136 8909.3186 8947.0745 10029.063 1214649.4351 5299.0128 5652.0999 13529.843 4827.8136 18220.9455 5087.3751 10748.7695 5793.3563 6784.2939 7241.5075 6146.4498 12091.5077 365337281 ppk Phosphorus Polyphosphate synthesis NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 113096.1438 15494.9208 37843.7384 455576.7019 28868.317 36546.6524 38092.8635 16616.3235 135744.6336 48628.9353 31130.8926 123213.3942 44362.758 89974.5194 97814.7802 64943.5706 64943.5706 46551.9832 96748.5739 34660.9224 298463.1184 63802.4911 71038.3465 43810.9547 57300.6598 82731.805 49409.7829 313452.5217 165800.5305 90933.5575 21605.3824 55736.5494 66083.9172 17133.3854 100459.4122 307772774 urec Nitrogen Ammonification NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 5348.1179 8629.6063 10228.2373 3997.949 3751.509 6808.7258 4318.0549 4674.1123 5516.4361 5389.4129 9772.6925 9772.6925 9551.183 9178.4567 9196.1416 4986.9553 6049.2188 3299.6132 11402.1898 3912.6719 19023.4684 7149.8113 5508.861 6835.9418 5572.6114 5234.2972 3364.9547 206676408 xlnd Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 197054.5286 98558.4008 73453.9932 102271.9125 177009.6349 53776.0926 134874.3052 521261.0059 63306.7646 85858.7988 118707.8311 96516.9176 2089153.8967 150629.5063 126872.7892 708087.1107 107422.0098 107422.0098 49184.5115 140810.8064 64315.4977 70686.864 348136.7614 109024.0675 56140.7988 61254.1656 90040.1036 90117.6072 143990.2883 68364.4228 106555.4476 47116.9565 68852.774 75276.7612 72928.1889 131417.9792 167349063 linb Organic Remediation Pesticides related compound NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 61016.7984 15467.3904 25148.208 18898.422 61927.3626 31707.7828 51693.666 75607.4192 25849.5241 20176.4739 192397.087 43366.2377 652836.668 37618.212 61207.6774 41878.4506 83453.34 83453.34 32946.8905 73363.8906 56910.1509 54053.4002 39378.2684 80824.4671 31589.5585 35280.0787 45102.9148 27842.1328 134027.65 54360.4674 93066.4824 30305.0049 33407.584 80973.3554 38457.0426 39721.5639 104781686 phdk Organic Remediation Polycyclic aromatics NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 6843.6626 2280.5389 4984.3976 4604.2979 3553.642 134125.4593 116743245 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5923.425 5357.4655 3554.006 2125.6048 4254.6865 6449.78 2728.9885 87573.8281 4050.3407 2297.5166 2297.5166 4325.4565 7501.6079 3998.0957 3950.586 5782.5063 5927.7976 2989.4888 7831.0533 4052.2912 10070.6079 3808.2678 6754.7807 1755.8413 3168.156 4119.2006 8146.9106 395773649 pcag Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 129009.2661 286099.3251 1883990.6967 43626.0165 16023.2677 89150.3521 49202.6343 17378.917 30991.8486 55883.7398 77791.6816 1381437.5286 133411.4833 59077.0084 57857.7905 78611.007 78611.007 35004.9957 61206.9262 33935.4274 42849.1598 73158.6811 45337.0144 30783.8006 20465.3194 51524.0579 28354.6595 127538.1098 68354.1193 56946.9679 24235.4794 33613.732 43938.1453 26236.1931 54067.8981 145591430 dsra Sulfur sulfite reduction NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 215659.8383 13545.8479 335411.5484 90357.6702 80972.8404 3002.0443 4770.5731 3265.8204 85573.0747 3984.997 3265.0122 3265.0122 3017.848 39518.9412 5311.5675 8992.1868 12817.2551 5142.3709 3566.1458 2839.6738 11297.4889 7880.4638 14793.0673 6941.0195 11156.9968 10283.6893 4333.6848 4767.3179 9245.8182 269828429 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 11240.734 6395.6679 24267.3207 13263.5412 11561.3021 5591.6835 7099.3935 11659.1158 15631.1894 19347.5769 165132.1621 9836.8016 14268.0293 5702.0967 12059.4622 12059.4622 7443.5202 23405.6726 11269.6258 15603.705 13580.374 10867.8587 4771.0071 9245.8835 14813.8627 7140.4092 22407.3043 12263.7091 18107.0664 6537.955 10773.3826 8833.1245 8668.8133 13437.1005 242212047 rgh Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 4623.5539 346350.3433 2527.7008 4800.9135 5151.0075 29268.6008 6401.6813 4751.3029 6398.2604 11735.943 10378.1453 6535.0038 6172.4074 2699.323 4079.2046 3666.706 162281286 soxY Sulfur Sulfur Oxidation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5344.5252 264140.6583 5146.2764 10659.1001 18642.0383 23583.0946 3103.4363 5594.5332 5938.6372 23774.7903 4902.0436 3260.6351 3260.6351 2588.818 6903.2091 4773.0546 4906.4234 2507.0413 8164.7044 7527.0952 3733.936 9426.9545 12267.8747 10164.0882 2410.8014 7475.2095 3045.4801 8635.2645 388003864 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Q8r1-96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 33239.3373 20666.1433 33744.9753 12129.6829 9299.8668 19771.8561 19171.1593 13630.3556 22859.6212 26430.5465 11252.8927 647081.4779 31554.147 39957.1527 19349.1613 12801.445 12801.445 18953.8509 32993.6879 20197.3364 41022.1972 32383.563 28634.7789 13350.6884 19436.4829 27638.2996 29124.436 49035.7193 41338.5573 31036.4651 18906.3305 16658.096 23936.6567 15365.1631 38434.582 227091116 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 3889.2154 7541.0154 6346.8071 4202.0047 2673.3207 9313.9958 14457.8519 2693.3514 142601.8508 8935.7139 5799.9159 3013.0288 3013.0288 4328.751 11415.1268 8280.953 4974.7656 7114.7884 8905.7682 2378.7304 3237.1631 10908.217 3352.865 15276.0116 7572.2217 9180.507 4318.8486 7701.8689 5771.3978 4999.5949 15183.4144 365418365 PRK Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10315.4223 327395344 terc Metal Homeostasis Tellurium Detoxification Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 88771.615 21379.8205 1744567.1231 59727.0122 54074.1176 274244.4714 39770.6815 16926.3415 35139.7567 23883.3354 31049.0846 1034192.5429 41670.6148 39890.5836 77168.3834 68886.8319 68886.8319 20130.8267 97268.505 29839.6655 55298.2115 721558.2938 127270.8026 30476.7364 29155.1644 59671.282 25525.8026 268253.9103 135782.6975 215449.1209 57812.4708 93971.3709 21052.4112 21712.4954 133487.1688 387847560 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 29132.4326 16857.4603 364496.7805 16345.0912 62466.5159 26317.1102 19851.0283 20194.1269 6995.9482 17641.373 23101.6121 41414.4502 446964.4489 23496.1486 38446.1257 55511.1445 29669.4546 29669.4546 14067.6668 39874.4123 24687.9936 20171.3429 30136.2912 21385.0076 24204.0455 16624.7965 56028.5493 12458.0571 48972.4389 39097.3939 36601.7388 16048.0682 21835.8592 33128.6653 18089.1956 23543.3031 387968498 narg Nitrogen Denitrification NA Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 15865.9849 6171.1427 35894.6514 4934.4488 6624.0429 52910.4667 5720.9497 65155.664 11137.4173 5349.0448 8856.4289 7461.7938 7461.7938 6164.5823 16690.1966 15491.8657 9660.578 6575.4446 3226.2183 4130.583 7434.83 13782.5314 15816.8338 12065.2568 11044.5711 22788.5993 5818.2665 10011.2397 10927.291 6323.9964 219858510 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 7905.8564 9593.9692 7471.6369 4877.8484 4722.3626 2171.8415 7373.716 6506.473 37819.1045 93036.6799 7414.5964 8616.8279 4283.0912 4283.0912 7492.8261 14933.7403 14727.3398 6579.0105 20091.5272 8180.7059 11021.372 4661.2913 10874.0798 11683.9051 14104.327 7690.5885 16490.5278 4032.7795 6327.3875 11588.2548 4263.3955 11406.3236 37548718 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 606099.2103 538902.3273 110664.7542 143421.0789 32966.653 230857.9583 218462.8146 179755.4355 440632.8564 545089.0601 214499.0613 3490592.0658 252950.3318 502237.4194 572353.4293 260427.4827 260427.4827 190697.7654 311842.3527 206819.6859 179884.221 421404.6459 125211.0666 104277.7064 130877.3706 184942.4706 157192.6869 630232.4394 560556.9315 443149.163 303659.3438 216363.6695 243997.9371 160906.8965 280196.8513 145609041 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 72686.978 9636.3899 23685.2522 34868.1859 10733.5362 53892.3005 29676.4454 14301.8437 23214.7086 48121.4036 62773.0267 320444.9377 64161.6222 49559.8785 23025.0703 45021.7085 45021.7085 13826.5494 55197.0777 56577.0616 29049.5056 28962.7291 29039.2843 52696.6604 22628.851 19931.8097 44413.3251 44868.1696 19439.66 45259.4447 24282.7804 24532.7348 43278.6567 16329.2872 23363.0712 110825324 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4159.4554 7738.8585 35192.2607 8618.8673 3714.5509 8143.2641 5681.0105 7619.2259 7439.7178 4287.65 212041.1066 8515.0167 28228.4765 45703.6471 30744.1047 30744.1047 13731.9373 8706.033 9630.6234 4537.0049 4292.1707 2641.19 6786.828 12162.0686 2452.9864 14631.6489 6131.121 17889.1625 3612.8547 5245.143 16930.3075 2418.3183 160917548 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29137.1525 12230.7588 39296.2154 24110.2353 14899.5304 9372.3152 16763.5428 15101.3339 28598.1392 30211.4062 16777.1183 823947.3377 29513.8895 31290.4511 19404.5415 15315.8882 15315.8882 28276.1204 35168.7364 28650.8763 29801.3328 43352.6192 39498.2362 17254.4738 15867.6716 35545.1914 12279.5127 47923.5406 38888.5014 34587.758 11186.91 18562.3006 22214.5887 15513.1878 34344.8183 262182429 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 19962.2786 32882.6914 45596.3563 22051.2271 27042.3267 14013.8168 16247.0808 17298.446 20432.4935 17066.2945 816333.0677 25256.0303 23405.1409 35829.4407 19213.9795 19213.9795 123938.5103 32820.862 23359.9266 33954.1283 31084.0585 30224.5209 17052.4191 13915.4177 28361.1508 18454.8305 84012.3822 12842.7839 30168.3663 11983.3466 17543.0618 27483.292 16402.411 30177.6261 238784332 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 36272.4509 5905.2386 6523.2205 41242.0373 55163.2453 59522.6763 22874.205 4116.8089 63919.7667 16619.6556 6232.2041 320282.9272 6448.8134 6255.147 4326.8381 10813.7765 10813.7765 3734.372 12497.3554 4239.809 4315.7047 6977.1994 4583.1162 2925.5678 8589.6265 12096.9277 4868.9077 10837.5075 5143.468 8868.5936 6275.8033 7198.3999 23956.2967 4729.615 11484.032 57224952 mer Metal Homeostasis Mercury Detoxification Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 9639.9083 39258.7136 27922.3297 13289.3112 16158.8155 3673.9569 19833.2455 27871.4874 13360.8494 25175.0569 10563.1582 153343.8545 9555.1283 10915.3332 10972.076 4292.6722 4292.6722 6121.3127 19778.2038 7609.9667 17443.7521 18569.4992 8699.1621 4955.0277 10416.8717 10979.0457 26533.1817 31708.8097 13853.609 14858.6891 8627.5422 9765.7212 12677.718 7982.0887 16397.7206 289558063 amyA Carbon Cycling Carbon degradation Starch Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 15148.4396 18669.9559 12480.7902 44452.6778 21228.7657 18633.5766 10442.2457 192402.6403 10783.2186 18806.6822 13587.8951 232746.5149 31731.1283 43680.2806 18605.4291 18079.6729 18079.6729 10158.398 45020.6816 12813.4088 9999.7083 17607.1072 18184.7533 14279.1898 10995.324 28894.731 10831.7511 64531.6593 25516.3811 31185.3646 10151.5653 19648.3121 63120.456 8692.9582 49612.9207 68347567 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4668.6382 8968.6956 4746.2678 5019.8082 4707.76 4347.3079 10299.4286 300102959 exoglucanase Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 15013.1068 15064.5934 4834.1681 7774.8588 22207.1378 6007.3809 7059.7022 6295.959 2187.0968 7761.7152 11591.5753 17596.0198 142573.5875 9669.7732 13923.2145 15258.8488 12444.7814 12444.7814 6940.0599 16422.8386 14682.1093 24205.0996 19185.3019 11232.3509 5879.1079 8031.9862 18512.7564 6258.3613 33061.8047 12378.8318 22430.4034 7397.0884 13907.0199 30658.0847 7449.2584 12759.0205 386019182 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri DSM 4166 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 53078.744 9526.5818 9501.4126 30365.8671 12006.4352 9638.7129 18101.3173 7560.0152 14564.4377 30070.9504 13445.4214 720407.4287 40155.2107 16967.2415 10803.6329 16244.8555 16244.8555 11230.3112 32836.6977 16096.5238 17095.3252 28244.0535 15932.1901 10322.0815 17342.8745 22286.6023 16617.8502 55300.5995 14282.5887 35035.7967 14239.0586 20578.4306 48340.3571 11823.5832 22887.5487 294676161 terc Metal Homeostasis Tellurium Detoxification Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 5244.431 9065.3788 5910.5317 6190.8759 126106201 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 17293.6705 10806.3027 19643.8334 9684.4284 18750.8171 6481.5873 35894.5481 6710.5998 6123.068 433671.5139 11118.7563 9897.5099 5177.1608 5177.1608 4958.7712 10811.5269 4358.4919 7419.4559 5975.9586 54583.0042 12805.0309 6344.7939 18712.5355 4717.5224 22096.0772 6743.2009 10639.8732 4417.3987 10189.726 16084.8833 7940.0029 4477.0181 301335087 merb Metal Homeostasis Mercury Detoxification Pseudomonas plecoglossicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6396.0576 8548.5098 5665.0448 4471.8917 4394.9857 6021.5883 3007.222 84347.2519 7005.4446 4380.4614 37986.4043 3219.2068 6811.6543 7708.4794 13413.3929 3301.6202 2241.3288 10172.1286 9572.4513 6386.3737 4060.9776 3593.4596 2397.198 291005403 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 25005.5959 24802.2059 24362.1992 71245.5995 15522.0914 13222.1022 8657.8438 18524.3457 35976.8901 15646.5737 215974.4373 25132.251 33252.9342 113216.9123 26820.1961 26820.1961 14654.5088 90138.7947 55571.0001 14764.9153 15093.1338 7900.8738 21707.8773 20076.8181 14803.5697 34670.3127 65053.1651 37681.2043 31826.8509 8597.9941 18065.2512 38244.1154 15105.6401 18932.5541 29829246 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 4178.6207 4450.4254 5520.2113 2989.5687 4835.9506 3252.6147 9765.9782 73298.9799 8612.4611 16280.1414 4603.7044 2764.5559 2764.5559 5240.4357 2115.5868 5275.6432 7442.4907 6173.4541 1858.3987 3362.856 2295.7476 187977955 cpnb Organic Remediation Other Hydrocarbons NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 11503.0766 4109.4939 7720.9406 3347.7923 3128.6184 2183.2354 6633.6415 8821.6276 2983.623 3720.8726 18129.8263 7171.3421 4258.5451 4258.5451 4510.6898 15872.2096 8112.7894 12337.8619 16611.2894 13087.4452 5667.7858 4101.9992 15326.6285 4548.6328 17746.7711 7059.1108 11152.5423 6745.6909 8416.7251 14830.4526 8324.3442 8485.0338 15157719 pcpe Organic Remediation Herbicides related compound NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 210765.6548 23322.863 75951.4681 193196.937 140736.1801 48699.8986 55823.092 128623.5845 58464.991 83730.7598 118536.0941 117982.6739 2058520.3312 125912.3134 238503.9537 237308.7948 130729.5293 130729.5293 53678.5029 186037.0342 114283.7446 159834.9235 153354.5719 144408.8676 75596.4175 75160.3098 129269.0786 64354.7769 196699.6069 93806.5395 137027.8015 64256.0437 109506.0738 114892.6337 90771.6421 131682.7319 154297971 ara Carbon Cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6660.1591 27398.7227 9741.2755 6929.2834 9543.795 15821.4744 9082.2743 9006.232 7532.9999 10863.9033 6656.361 6656.361 3213.7338 9861.3729 6041.7145 4996.8757 5936.5937 2764.3607 3515.8566 17482.8707 7720.7777 12345.5566 7009.0984 16617.0684 5309.0572 6934.9179 25899.0126 4689.9882 4728.4683 321140272 amyA Carbon Cycling Carbon degradation Starch Streptococcus infantis ATCC 700779 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantis; 4019.877 3039.0305 7459.126 2066.347 2066.347 3121.7423 6197.1305 4763.5674 2411.0514 1713.9726 2667.9188 218131961 amyA Carbon Cycling Carbon degradation Starch Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 9797.6094 13432.8678 10748.0575 4957.4148 7993.349 7825.6334 6193.9071 11345.4017 11103.0209 5537.682 269426.5216 18656.3203 12198.7105 10526.3531 6112.0147 6112.0147 7945.0933 12993.1943 7696.6836 13588.5842 15410.7138 16779.8116 3492.5486 4571.4553 17270.9801 5129.9694 16215.7544 13826.8526 15567.2519 6441.782 4855.7282 7237.1429 5803.4201 13814.7817 91720252 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 41086.0999 14102.8962 19685.963 42426.6972 158747.232 13411.2126 24012.9603 53115.0228 15838.3304 42792.0695 130734.872 41036.8891 2556363.9855 59400.5592 30697.1376 71299.2234 69983.4509 69983.4509 64184.2484 93654.826 46549.1225 69653.7321 58540.3939 66815.6653 31992.5526 56774.0632 62117.9103 74937.0826 163358.3115 58202.8542 85244.9269 51458.5034 55009.597 76300.948 164801.3278 39118.8933 407749355 cmci Organic Remediation Aromatics Other aromatics Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 8837.4612 6167.2088 4678.0749 2329.2663 2109.3988 2989.7761 3195.1097 145319513 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 56722.0455 437544.6824 46741.4448 60251.7875 9042.5791 9126.1456 20785.3696 12761.6858 31508.9232 21568.5182 19124.1862 200817.2764 46245.619 29649.301 39506.567 24358.1308 24358.1308 47126.5543 46143.3823 23438.854 118635.9768 52018.468 44766.7927 19438.8447 17810.0585 47015.654 15550.7419 44467.7799 26654.4287 52168.491 11196.2235 20700.9677 28692.352 13452.0231 20774.0668 326331080 ara Carbon Cycling Carbon degradation Hemicellulose Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 93430.2862 26762.2252 112587.8428 33415.3415 383003.1232 30727.1495 26794.7337 83731.7278 21678.6331 40163.8728 45962.1051 47969.0401 1350976.8965 360691.8519 108033.1664 119415.4405 62905.9964 62905.9964 52118.0151 179787.1708 144563.1645 51920.8263 62739.1623 76997.7518 67637.3321 75996.7382 86330.6348 25284.7276 145122.3317 90054.1988 78899.8954 41582.5054 104997.9862 67516.7524 37179.3499 84930.2202 307216282 dmdA Sulfur DMSP degradation NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 4859.0325 10041.3177 5444.7649 8826.8672 4725.4436 2538.2177 3666.4789 4579.4965 15564.7954 4041.9794 67297.4946 3670.1631 3373.2976 9988.1992 9988.1992 3981.1147 10130.3458 6070.781 4462.4182 8368.4256 5685.5127 3179.2802 6259.5732 3097.1355 5123.1597 7611.1521 6083.5084 4962.0667 4355.6294 2459.0114 7439.6268 298291962 SoxA Sulfur Sulfur Oxidation NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 35096.9024 8779.4008 7711.6306 8389.4745 12159.8621 7816.8007 2729.1316 4329.0604 10631.4612 12282.4846 133243.8414 10906.1391 11267.5384 10431.0215 15426.5138 15426.5138 7168.8831 9530.414 9088.0779 6208.1348 11632.7909 12958.2881 3469.4757 6952.1391 14913.2581 6614.3527 22367.5846 22956.4099 14266.8101 5398.95 7710.8074 6881.4428 6865.3269 12544.4086 300335452 FBPase Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 6218.6237 4605.8808 6423.3102 77278.6915 4081.6742 8886.6033 5814.2837 2762.6379 4669.284 6830.5034 3689.332 3694.7374 2548.5079 340781639 metc Metal Homeostasis Mercury Detoxification Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 4765.6367 5325.4869 3769.738 4238.9741 6069.9959 5022.6292 4353.6833 90817.0593 5308.8704 2082.8205 2082.8205 4572.5545 8630.8836 6443.2025 6329.7624 6881.493 6529.9653 2805.4714 3590.7302 10428.7969 3569.5577 14235.0712 5200.6102 13174.8025 2942.8148 3967.8156 4682.9731 2740.4835 9256.1293 114324585 cellobiase Carbon Cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 11509.2613 12922.9858 13931.5903 9094.8718 11901.6516 9011.2957 9088.6031 6602.8412 13709.1203 13597.4368 14555.0569 490969.5683 15988.2798 13439.1601 14590.2483 9958.7859 9958.7859 206051.7796 14302.3288 10988.8278 15254.1686 15960.2207 13397.3419 18338.8728 18294.3481 19525.6157 9497.4833 23581.9443 13590.1084 19715.9343 24391.9167 11304.8437 10525.5121 9944.4731 10935.604 256392772 ara Carbon Cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 82023.0099 55359.152 48562.0726 58741.7066 22902.5893 9668.3582 15096.5771 8129.9461 26112.9925 18473.9106 12971.0229 578936.3917 15007.9663 28681.6672 35532.8566 28390.7868 28390.7868 7789.0434 41030.7221 27321.32 7188.9106 18564.9558 27486.9053 9555.3483 84212.2485 36415.9481 36807.5318 31334.1387 23632.8147 43765.7103 10518.899 15676.7829 16430.9784 9680.0258 21195.9218 91789118 TIM Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 20490.9893 5202.9803 17535.3614 9427.082 7990.4345 2065.7156 2903.3071 6112.7089 4202.2792 95480.8583 8781.7089 5143.689 7927.827 5030.0291 5030.0291 4050.1487 15595.7997 10706.0261 4940.6691 9323.5271 45433.2768 4749.4453 11506.4755 10486.352 4842.166 13542.397 5945.8127 8592.8868 6875.7254 7740.1964 5860.5121 2325.3987 6307.2195 68510314 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7503.3141 34329.2044 18851.8473 5680.9818 3997.5979 6315.5416 5611.9148 11289.3633 4700.2362 63342.2087 4069.926 9892.8289 6103.0193 6103.0193 5054.0285 18811.2775 12402.2275 10222.6836 8774.5033 4689.0244 5300.7244 3413.765 10418.6617 12668.3218 21246.0506 6986.089 7823.54 4426.0709 6581.3205 9606.9337 5762.9324 15349.3758 291615186 ppx Phosphorus Polyphosphate degradation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 8988.1008 4324.4505 7980.3478 36611.4041 4614.4616 2552.5355 4154.1218 19293.5802 6281.3742 73003.4429 5272.3351 79265.6088 7541.3356 5674.8295 5674.8295 3580.6932 10791.6503 9515.1897 16084.1879 15529.9998 6488.518 3975.5372 5407.9898 10154.4189 10936.4076 15118.8087 5449.9996 8706.8815 3864.5473 6106.0347 7724.6411 5217.6517 71864.6427 74038378 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3920.6135 4261.8188 13555.2007 5083.5118 6420.8481 4822.8032 3967.9362 2686.7969 110674.7453 9972.7528 4795.1629 2378.9572 2378.9572 3110.7568 8707.011 5049.544 5072.1056 6481.6526 4608.0306 2356.8441 3215.0738 12592.3976 7641.1723 12231.487 4542.615 8725.4042 3465.7202 5044.039 4261.9045 2883.3534 4204.3542 291515066 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 8783.5585 6504.3485 9559.9236 5597.9296 4911.1519 3319.449 3034.7747 3034.7747 8399.1325 8047.0671 2764.8342 7216.4586 7922.9591 2974.9652 4174.4019 2788.6447 344041897 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 48460.004 13178.6268 18603.3762 34189.5206 34606.3162 12323.3136 18454.1791 31863.8572 281082.5099 35551.2713 45890.3564 23700.7876 629164.9752 85651.721 35958.3534 55475.5917 66393.6152 66393.6152 36302.6704 57140.0137 41709.6194 682601.1054 40879.5828 49837.9881 24065.5398 27116.9353 53138.9488 33220.6557 101979.0401 18085.3104 160004.2566 16844.362 34934.4518 27877.1245 16987.4646 73550.5291 145903203 xylg Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis DSM 13 = ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 12204.2875 9495.8728 10144.7845 14565.6271 6598.2349 8391.6071 10307.0943 14253.7759 5302.4163 236122.9062 16479.977 15283.0625 8611.4037 5753.7662 5753.7662 10500.1676 16394.8219 10282.9794 1076861.5992 10051.4127 11496.0315 5671.8743 7573.6623 20937.7161 5430.2528 31877.5262 5490.6666 18431.1091 5034.4867 8484.5738 9190.3232 5323.0935 17125.0972 366158298 xyla Carbon Cycling Carbon degradation Hemicellulose Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 5188.3599 3167.8597 3608.3245 3907.1651 2770.7232 85461.4884 6397.8429 4458.7491 2930.6181 2930.6181 3401.749 9628.2426 7326.508 7362.6262 6296.348 9185.0315 2754.2819 3043.554 8963.5879 2680.18 13349.4492 6232.0109 8404.0393 2539.1628 3384.3879 4354.7685 3195.9757 9583.3137 219965634 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4551.378 10919.231 2427.4647 3600.727 2373.3984 3405.0454 5445.6327 4493.9997 70040.8116 8001.3064 11553.0635 4246.6495 5292.8526 5292.8526 5155.5934 13051.2096 3324.7657 5347.2289 2506.122 5617.8046 6145.92 3575.1857 18322.2588 6598.6017 11654.7381 3293.4948 5289.0324 6763.5696 76577420 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29530.8738 22274.4802 43894.6869 4529.4165 17103.9452 14142.1165 24312.4582 12109.8231 24201.3291 30587.1888 16960.4923 271240.1657 16730.1349 21609.9056 18263.8116 26587.0747 26587.0747 14378.3293 47907.0144 20760.0937 108522.1965 68624.436 24573.0294 18495.6967 19554.7054 16868.1141 16817.7602 54544.5562 29516.7937 25516.9601 21072.3157 20143.5428 15340.9968 24406.9775 32778.2662 347751915 amyA Carbon Cycling Carbon degradation Starch Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 10875.2646 7336.6124 20847.0364 5739.2726 4235.9351 16401.2473 5265.4924 12388.5213 22670.888 9613.2958 133367.6581 9061.7376 18952.0647 11172.8953 5530.7536 5530.7536 25583.8824 13330.1787 10039.8044 13099.436 12362.2703 8618.1542 5055.559 5742.1809 18194.3114 8478.5998 25222.5892 19882.8763 14635.0313 6408.1308 8630.8031 10152.6496 7336.0728 17547.4901 28971837 xylj Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 15466.1287 8641.3634 5801.2129 10651.798 22004.0997 5130.4173 7511.4965 13410.5679 9594.8483 202501.2908 16678.5463 8972.1165 17051.9599 8939.2313 8939.2313 30392.8576 20937.2411 20654.2194 95049.8047 38543.8318 13865.8542 15290.5347 15106.9008 12805.9016 7355.7298 340208.7412 6290.5261 15388.0145 6303.5932 9778.5243 14555.5775 6982.4067 24926.9184 29293194 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5737.0473 1872.6084 2521.3772 2700.4522 3691.6797 3715.3105 74716.4049 3340.9177 3436.5258 4291.7347 2536.704 7983.3991 5024.3287 4767.9756 6180.6936 4025.8115 6079.3184 10037.4108 2095.5487 8767.7854 5903.6759 1953.1173 3853.6233 5997.3256 4234.6132 6271.6715 326951034 catechol_b Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 48605.7463 26842.2026 46758.1059 53049.2287 370231.0993 75477.0583 17474.782 62387.4374 15220.8501 87584.3376 66437.6684 126585.9508 2108939.6345 179808.7483 187864.3925 176423.9995 98855.3655 98855.3655 30425.4745 71297.19 37287.1898 52188.1669 77928.4118 34964.1109 20617.0884 63036.3906 108847.4221 26094.7883 123682.2912 96588.3422 105144.8999 50841.6875 36740.2991 45145.3448 15475.6089 50045.6599 320106025 alginase Carbon Cycling Carbon degradation Alginate Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 22082.2758 6064.7838 18423.0278 71272.9098 4224.8212 121951.5841 4014.3846 20836.8938 9048.133 12564.1873 4624.0092 11336.2971 11336.2971 5581.0373 49475.8446 7058.2108 68839.5742 33257.1592 5149.9455 159503.2695 9283.6358 19568.335 3411.1583 163057.6654 32861.4456 12255.1895 5540.2232 14001.9125 8637.85 3380.383 712749.7313 315444915 linb Organic Remediation Pesticides related compound NA Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 35563.6222 7224.0301 7393.5504 45985.7477 364271.7223 6367.2804 14469.3944 28532.4495 23323.9128 20507.5427 248531.5977 10648.9003 10577.5306 46131.8847 16101.4252 16101.4252 10431.0392 114605.1103 86926.7262 22753.3484 67590.1456 10706.1687 10558.489 19077.2801 27412.0285 23285.1029 56435.1519 67529.9217 15662.5246 48974.4759 10743.362 158370.3355 25611.8307 38536.8985 170777897 soxY Sulfur Sulfur Oxidation NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9714.0618 11136.0663 22543.5605 3175.2362 62404.2416 2973.8865 31672.4072 10681.2151 22355.1099 164492.5166 35107.0085 81568.2593 54314.5266 13578.5564 13578.5564 5044.3503 14526.4283 13463.7324 25536.3245 8663.3021 35803.2185 6408.2887 7757.6207 11955.221 45181.6477 45531.8638 34438.9253 25168.3334 13670.9899 54473.8672 19344.0807 7619.5039 10408.8946 380774728 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 44849.816 21707.6523 2780.3254 10241.9244 7195.8501 9364.7674 13630.2351 15855.2751 116209.6249 9556.4434 111837.3488 7044.7729 6752.1946 6752.1946 6581.7903 12244.3488 6672.071 4822.1568 68617.1612 5424.6687 4097.4956 6486.7142 22820.0205 5038.547 41941.0733 13083.6314 11639.699 3456.1709 7762.4682 8658.0983 12130.5895 4519.9122 109452531 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5290.0533 9632.9477 2006.2169 4541.6686 3176.5286 60413.3634 22412.5396 10603.0589 3710.2525 5137.1702 5207.6568 5759.6453 14978.5194 4127.6767 13208.3618 5751.0429 6521.8498 4175.3602 4852.0878 350532609 amyA Carbon Cycling Carbon degradation Starch Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 6479.5041 3126.8319 2753.8686 5667.9955 3368.0943 3666.7939 2905.6685 6365.9545 358637919 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 33677.6139 6084.3491 5110.8997 7583.2417 5234.0054 7795.6209 9138.6247 14133.3987 6310.6492 10153.8762 7087.0063 124295.2436 17059.0108 9211.4625 10743.9174 12327.1518 12327.1518 8559.73 12382.8164 10792.7268 25049.1521 6854.524 15108.3514 5482.4362 6700.716 10628.0576 7226.6435 25601.8878 8199.6932 16395.4271 4234.4414 9381.9013 5355.5943 7431.8737 11014.8715 14523756 nosz Nitrogen Denitrification NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 7823.5048 8542.0121 6403.3597 4466.6994 7914.6788 3738.8339 153805.3038 4746.5325 4746.5325 69227.3147 9664.7705 2656.0026 5287.8144 3706.5723 10946.1994 11568.4577 8841.3708 3340.0805 5819.2849 5360.6879 5152.5648 187476763 terc Metal Homeostasis Tellurium Detoxification Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 19635.9242 15276.8043 17654.9436 48743.945 304172.2631 37063.3978 172926.8361 35935.1056 22939.9838 23291.9483 38429.5348 31490.9283 1031941.2348 31247.361 35856.6277 41105.2901 29595.1815 29595.1815 14298.7547 58887.0654 33745.5616 16218.6621 21665.731 36405.3331 39841.4073 21557.5959 69214.3526 16686.7524 70840.3596 77698.5491 96736.9007 18794.5231 23801.5964 24921.5609 9861.6064 22238.5125 302686354 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 31339.7234 151996.0169 30792.2643 6698.3292 20897.6982 10401.522 32287.6774 17433.5514 6900.8886 20498.2023 18517.3557 33909.557 1548394.2683 37091.3085 121835.9293 28679.3703 15817.6203 15817.6203 34038.0321 47476.2353 18888.1738 26381.9877 20875.9964 20171.0602 29852.1843 25355.2629 23214.27 96883.127 77418.0729 120166.5782 53375.4244 12330.2997 14154.7733 15205.5822 21968.7881 65831.3993 56678387 nbac Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8092.2888 5664.0988 7645.1991 64580.4608 5823.1277 27342.6826 7379.9204 8752.48 5510.8465 7106.9085 4566.2825 114034.8248 8110.0233 6679.1575 9374.196 17076.0058 17076.0058 5019.1783 6919.042 8935.59 169034.0965 10969.2763 14549.6779 7411.886 6430.9688 11826.7577 4620.5997 14669.4765 12169.7387 12762.742 4546.351 5613.3467 7263.5474 5858.8881 15476.5805 356699038 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 25898.6686 19410.0031 19210.4235 36455.8868 21528.8025 8431.7032 21148.9656 13764.2484 12721.9353 20626.8638 23856.7293 10061.5156 543234.6133 27097.4093 30015.3446 36350.6277 11117.6963 11117.6963 13464.9813 30145.9803 21548.3228 145582.7352 58417.4538 48602.492 14524.4159 16844.9364 30039.0158 14968.3214 47289.2237 26255.1389 30953.7239 11598.7169 19188.5542 17997.6697 12729.7449 34470.9563 6175856 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 41244.9333 27768.7821 18483.013 33798.346 7832.4963 9946.6984 38970.2162 18490.3435 37522.2353 58412.3431 28160.9674 429182.1094 63508.4353 21423.6781 106888.2741 26056.9592 26056.9592 15635.5748 43222.0599 22543.31 23605.7273 22885.6995 22751.6896 22644.4232 19846.445 26269.5033 19482.135 51992.3802 24973.727 29281.7744 10879.2936 20490.4491 19634.9415 12825.3908 76431.3839 53758880 nasa Nitrogen Assimilatory N reduction NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 45518.6696 18081.3451 143944.4949 29802.7941 30178.6058 9628.209 15519.8375 39714.6304 9635.9832 21037.6128 37011.8198 30416.2194 699108.5239 51236.256 32566.7139 30005.7316 45656.6427 45656.6427 19499.507 44712.9037 19758.0811 36075.4572 253233.7465 23877.315 107004.82 28505.7488 52358.978 13105.8624 114718.7163 31730.4039 36524.0968 16013.6902 35160.8582 36672.1917 22761.3984 46025.6505 237797281 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 7640.1279 13149.0205 5693.9729 3546.1437 2189.0987 1933.4488 3229.5271 9716.9884 6311.2237 141946.3476 8135.4114 5032.8568 5370.5491 3340.6123 9692.2922 4568.2497 8657.9987 6628.9102 4977.5759 2206.7753 3010.4525 5276.3502 4234.2235 3095.9019 3708.6935 5559.0299 2320.2389 5102.9928 5527.4401 2677.8279 5879.1007 157401497 nifh Nitrogen Nitrogen fixation NA Methanococcus maripaludis C6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 20733.4831 6658.0218 13475.3423 15323.2147 9983.3658 7513.2309 8940.7347 13561.0222 22366.6894 11890.4355 312127.8129 26785.3796 18614.9533 15693.6965 9182.8291 9182.8291 10436.6245 19435.0126 15275.9855 12205.9171 17588.5199 15656.3704 6796.3552 4905.9172 16981.7521 6412.3697 41899.4261 14087.1663 21936.1744 8869.1807 11941.0686 13803.8845 8112.6357 27221.3545 251773406 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 19914.0818 11976.7433 45375.5766 13864.823 25759.4081 5821.1538 9007.8587 21499.4474 8680.3991 20475.1104 32407.0719 16203.6272 230896.7548 17901.8799 30521.511 19266.4066 24588.0856 24588.0856 19007.4447 32238.7311 20699.1146 33607.9077 126528.0395 20259.3058 12779.3158 24537.9929 20756.9972 20020.8212 47139.6773 19453.2346 26601.7534 10160.9077 25533.9674 24813.4721 7482.052 22645.6384 407684991 catb Organic Remediation Aromatics BTEX and related aromatics Alteromonas macleodii str. 'English Channel 673' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7492.8192 2350.4743 4760.207 94307.3046 3977.578 3679.3127 8636.6152 4238.5107 3720.8326 21420.9268 10189.9951 4769.675 9439.6982 87280994 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19770.3711 6028.2423 7502.834 7721.055 10872.9674 9871.3656 11626.7115 11752.092 241289.4573 20851.1592 12620.203 12754.508 7280.6625 7280.6625 5492.765 13092.8824 7542.5788 4146.9816 24705.6592 18430.4385 7356.6624 30828.2452 11289.902 21922.7945 27071.4578 6112.4241 15470.046 7822.866 16348.3139 22483.1433 12685.9532 15881.1118 300313152 gdh Nitrogen Ammonification NA Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 11743.8662 12465.0246 2859.452 6221.6354 3861.3465 5605.4231 9042.0686 5056.5784 850048.7512 5884.9417 12135.1483 47081.3524 7150.0155 7150.0155 6158.2533 21965.8087 12418.483 6473.9043 14624.5546 4729.1862 10327.7329 8547.6416 12320.0894 8428.9517 63533.8321 12525.1858 15676.3159 4402.9392 12037.8229 20942.6233 8503.3953 15698.296 63081964 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 16594.9641 15459.7441 44169.7641 9018.1709 6600.3055 3726.6797 5256.9244 7619.555 12751.3437 166402.1025 7608.9279 18347.9845 11081.7099 6499.3832 6499.3832 4208.9537 11401.4606 9036.0415 11926.5505 14698.1188 6875.6584 8839.6637 7005.2729 13307.4094 7307.8027 18400.2799 10333.1526 8520.4305 6818.6568 8010.8122 5521.363 34966.5759 62512288 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16494.1411 8374.4912 3595.288 3678.3894 6173.6372 2785.2481 2785.2481 3707.3874 30796.7565 4457.2478 3992.108 159185940 nirb Nitrogen Assimilatory N reduction NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 4872.1895 13419.103 39603.138 31722.335 4602.9138 14590.3766 7294.1338 10897.89 5572.0727 342408.3775 8079.4534 10390.0941 11039.3044 13455.2078 13455.2078 5776.7946 14774.8173 11325.0284 6811.8628 5629.7623 6127.5876 2801.3281 9625.656 24124.3124 5065.7015 25566.6258 22318.3134 19185.6501 5914.2883 8927.9414 4507.5911 5788.4366 12593.0696 401669366 xylg Organic Remediation Aromatics Aromatic carboxylic acid Arhodomonas sp. Seminole superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Arhodomonas; 149824.8273 19560.6224 304275.5386 38062.6908 26592.047 9516.4487 82282.038 20456.2187 22527.6083 26126.2999 38898.65 426998.7326 31600.851 40183.8718 32016.617 42481.211 42481.211 19278.8475 71794.0055 25725.3595 38472.0805 33411.54 25143.525 22678.9962 24743.8877 45890.7478 18359.3225 81548.0393 73751.8614 41337.6718 18084.0321 47991.467 57124.9157 17673.4444 39749.8037 422314185 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5993.0556 40032.0398 6136.1719 13158.4603 26810.4753 5930.9449 3723.6681 3983.6839 10828.2733 6802.3194 91519.8684 3865.4969 16645.6799 4665.2564 3727.8178 3727.8178 8380.3926 4333.9764 13809.4602 4665.0802 5846.0633 3295.7232 4206.0341 14039.662 2860.5426 13159.0821 8580.1883 11539.8668 3625.8148 7005.3704 24955.3963 6240.9341 390190066 nosz Nitrogen Denitrification NA Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 4227.4798 8553.0235 4093.2232 6284.6601 6828.1465 4563.7171 7890.8805 294611076 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 10214.3518 6044.8725 3307.1941 4924.5281 5612.9365 6089.2074 9265.4929 16173.5491 2618.3535 2618.3535 3990.3668 10741.9684 6165.1282 4711.4491 6870.5929 9284.3674 4057.1909 3402.0702 6534.3006 2710.4806 12859.71 4462.2622 5963.7541 4256.657 5173.0373 5935.9799 3587.4569 7815.8927 169615238 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 3690.384 1837.9176 2447.59 4044.122 59897.6294 4544.5706 2618.9702 2618.9702 4426.3802 4838.7007 4814.6417 2571.9729 2974.9903 228018837 MCM_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Sulfolobus islandicus M.16.27 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus islandicus; 83759.0307 37686.5205 36180.8536 86019.3921 39166.7873 51196.2329 148695.8336 131786.1986 42865.0018 153083.7255 98503.0172 149201.4643 1453233.5138 62565.0868 103423.5547 120268.353 84347.9842 84347.9842 41501.5534 95149.5637 48461.4574 54274.2129 70434.3237 76244.15 28322.9261 48590.6688 71678.7031 132995.6162 221035.4619 130444.3214 80808.6011 80464.7324 44495.8692 45119.4364 33650.4364 95928.0002 379988835 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 122059.6035 18672.5124 53965.6102 36418.9981 21485.7908 38431.7159 24432.8265 27165.6043 30217.0191 22609.7645 33920.6721 37702.8619 631868.5673 33367.3998 35026.9129 30675.507 31815.6385 31815.6385 27234.4782 37780.6244 20237.4009 103037.6535 40214.3344 48615.6691 19409.8242 28326.2006 37397.9989 17386.4443 68269.8185 41847.3149 128511.8482 18386.1313 19590.3876 21283.226 17125.3103 36159.7076 302432123 xylc Organic Remediation Aromatics BTEX and related aromatics Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1016089.1982 12505.6672 38396.0882 37323.0553 45188.0778 50033.7576 28023.1516 41924.1765 21559.79 51285.0032 100588.1946 94607.148 10332535.2481 167736.4506 81183.0266 54957.0404 173702.5183 173702.5183 28438.9792 64152.91 59363.2879 96809.5999 69705.5123 53331.4934 25614.2675 37394.7744 71633.0189 24142.2234 106424.3273 355064.5979 84181.4815 23287.2521 30499.9489 79326.879 22366.525 72885.7901 242130571 arsc Metal Homeostasis Arsenic Detoxification Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6670.4095 10504.6379 15679.5104 5265.1221 8988.4284 6542.264 144495.6785 8994.0215 9746.1472 7355.2851 132351.0307 6546.5201 10322.1734 4561.0012 4561.0012 7069.3764 12521.9361 17139.2127 10990.2623 13897.5328 11370.6889 6086.3711 9938.7743 8017.8746 10039.3456 19073.5992 6081.4786 11912.8873 89586.2511 9864.0761 7641.15 6874.3341 8165.0496 182382462 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 39547.594 1877384.5853 5706.98895 8106.6645 5391.1015 11893.43045 181606.7098 10424.32865 12259.50945 5390.3924 15827.78965 9940.53345 11932.4112 12073.62385 8729.0494 3631.1376 9721.8472 28030.1106 10501.2596 16455.8588 4887.4513 6734.07375 6650.4453 21571.6786 189188436 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4613.7817 5782.4864 2999.3766 3241.8332 5484.1557 4486.5949 3614.0994 111294.9649 3656.3586 4109.5985 4109.5985 7428.0273 5794.521 5850.4664 2580.9205 11497.4198 3071.8103 9838.3151 5621.9423 8418.2767 2727.9636 3895.9502 4415.1213 303282011 terc Metal Homeostasis Tellurium Detoxification Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 3955.3995 292489017 tehb Metal Homeostasis Tellurium Detoxification Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 27980.9932 23909.8812 46218.6453 17420.4716 43198.3458 17317.7162 34191.0117 34405.9982 99276.7252 28832.8431 39395.0094 381936.2881 382310.4295 76304.9974 52165.7105 46466.6139 27009.2955 27009.2955 33613.8134 60322.6679 23940.0927 33371.5908 125191.2174 45757.5499 29435.1402 34634.0266 64655.0127 205468.9773 143496.5785 50206.3202 39696.6946 22562.0593 31738.5911 31730.9894 55702.6953 58253.6241 91774673 cysJ Sulfur Reduction NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 20968.5389 121428.364 10549.3429 5383.1817 4720.3302 3686.5923 12078.9848 6512.1222 5995.4678 92813.6002 16847.0786 8526.6764 8905.9545 15400.5825 15400.5825 6273.8717 13186.2167 7675.3317 24285.5296 11779.0535 14343.0467 6732.5463 7887.7463 12035.8402 9040.2291 26528.1545 13211.4912 68044.401 5501.7745 11348.298 10776.9366 6047.8123 20338.7339 353211455 PRK Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 6994.1348 15443.8884 2036.8734 5147.2167 4148.4049 54708.7802 4998.1017 6247.5765 6247.5765 5142.9583 4802.8891 11946.0349 2185.2088 7522.3752 4902.2304 6522.5879 1972.437 2756.6101 3976.0733 357596204 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 4752.0967 3889.6197 3272.9839 2853.3587 5392.6489 2649.1838 109531.8717 12877.0697 4333.4916 3415.826 11065.0405 5084.3821 5690.1562 4929.4951 8228.9278 3239.5764 3099.1829 6492.3872 2312.7409 13188.1753 5584.4018 3154.4066 3618.7195 3371.455 2293.7894 9439.67 148503424 catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7478.3916 7684.9806 4784.968 4569.9861 3625.7635 4845.0792 8877.1155 2623.422 121213.1724 11981.0293 7044.1566 6319.5494 3246.4659 3246.4659 5416.7637 10723.6281 4934.4434 4465.1668 5236.4264 3071.5161 2688.6906 7723.7682 2785.2805 10514.582 5286.5433 8139.0361 2330.9469 2952.9836 3485.7914 2423.6864 6441.2675 110597228 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 9050.8366 6050.1841 9214.818 6486.8431 5068.69 3688.2104 6463.7348 6755.9662 3951.2535 173899.2607 8100.0343 9732.0467 4200.513 4200.513 6009.4632 16982.8665 8941.0402 8459.4458 10012.0633 6314.3971 4238.0685 4569.7767 15299.3258 4333.2928 16357.1345 5263.7187 13401.2964 4555.6872 6009.8445 6386.7453 4154.5016 11775.2047 26278844 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37516.2369 12469.9846 9233.1869 24906.4761 25841.7703 12258.6165 12690.7095 9422.7782 15957.2817 21650.0498 9386.4127 931345.7156 21287.5073 14638.1509 10512.8848 7512.3157 7512.3157 13492.4809 34401.4832 13381.7695 53827.9168 22239.9825 54066.4755 15183.3608 10867.5037 20890.9506 14579.3937 42744.0557 16442.3472 23392.2049 9653.0351 13288.6204 20043.7797 12402.7869 25249.8602 340552219 ppx Phosphorus Polyphosphate degradation NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 6522.1258 14543.0091 3011.3979 5104.9563 6309.9202 12586.3117 40399.4977 10421.1854 108862.2364 9645.0549 26185.0812 15378.2449 4900.1244 4900.1244 17198.5325 12315.7345 8894.8394 6668.5284 15692.3085 14644.3832 3066.8876 5922.6214 10663.3106 20384.8585 33364.0111 15223.9653 14318.7282 10470.5408 7369.4175 8185.286 4979.8247 9176.0617 110634738 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 78935.0008 42077.2528 88584.8898 92046.5867 63583.2663 43267.2552 97503.6649 132501.0218 68769.287 86886.637 38238.4331 5356334.953 78807.6101 80939.873 98530.5332 55417.7387 55417.7387 40737.6108 90719.5212 57009.7412 63215.3987 69527.7451 93154.9177 45863.3138 36602.8635 68651.7485 154099.2265 151800.5092 50940.5703 80438.4358 36294.371 97772.8181 50638.672 37160.3662 102226.6473 347821371 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 101428.6793 5659.8889 7789.644 3889.3592 5631.3185 2294.9976 6072.6177 5138.7823 3286.1808 135339.3604 283647.129 6270.3776 2894.3374 2894.3374 7217.7675 12161.0413 6008.5093 14015.0042 10612.9461 10494.8193 4816.4009 3139.0193 8772.3414 3793.0539 16401.0765 5458.2092 11381.2451 3329.9639 5387.2347 5552.6876 3618.1951 10311.4178 377562406 cysJ Sulfur Reduction NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 7357.9296 15979.4489 5479.9616 8477.3871 65815.6253 8614.3132 3641.3355 11033.4879 8820.2921 5687.8087 141830.0691 9727.7935 15440.9134 15970.0911 11840.3774 11840.3774 6649.4285 26727.7084 12482.2013 9655.6925 24100.3308 10297.6612 7811.8188 13537.9701 19985.8199 6376.1315 28348.4777 15842.5161 12419.9668 7745.7487 15455.8983 10538.0727 20485.0312 13284.9926 87302502 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5410.4779 2794.5768 7543.0757 7273.8308 8357.6903 78381.8134 5571.4613 6509.6244 3946.5521 3946.5521 3860.3302 4092.9466 5628.5838 9156.1149 2742.4631 6578.8966 10524.8237 4047.3228 50279.8683 5603.2524 19603.0009 2620.7105 5718.7562 8765.9598 3049.3649 8227.4518 239593743 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9673.1321 6298.341 8213.1814 8175.7532 10577.6217 7666.696 12421.3385 5772.0436 9225.6351 8859.2321 5791.1913 169949.2476 16387.1809 8792.5765 5934.917 5535.4362 5535.4362 6657.3317 17784.5547 11114.3766 9539.4267 11388.5064 10167.8488 6575.9828 4303.615 21908.7511 7202.8181 18237.6846 12650.6973 17409.9922 6477.4695 7724.4295 13638.947 9707.5969 17948.2166 49532025 ppx Phosphorus Polyphosphate degradation NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 21229.08 85288.8226 7459.9532 7435.1128 8468.5288 4391.9976 22623.342 57283.1088 13165.6966 199989.0052 363380.3854 29522.3634 20936.2101 13512.4494 13512.4494 12709.6056 36974.3734 23334.2873 15496.2729 30772.5185 52597.2074 6434.2144 9528.6275 21475.8701 8619.1631 38118.1183 21579.8116 20157.9895 11652.8849 15460.4026 14600.3059 82145.1152 12688.7114 17976737 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Stanieria cyanosphaera PCC 7437 superkingdom:Bacteria;phylum:Cyanobacteria;order:Pleurocapsales;genus:Stanieria;species:Stanieria cyanosphaera; 4955.3842 6465.7716 3702.3935 3732.0321 31540.2979 2954.8726 5301.4639 114026.6257 6100.9336 5014.8769 4084.9805 10084.0745 8529.0551 4851.3499 10892.0497 6917.7632 3504.6534 3461.0582 8908.2786 5684.8302 42380.5431 6453.6595 6192.9914 5067.3975 6442.0096 5067.322 5145.5383 8789.7492 332665873 terc Metal Homeostasis Tellurium Detoxification Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 44416.2483 17660.2828 58403.4679 6327.7299 10544.0622 195381.3195 9456.5719 62523.416 59111.3849 17128.5376 405863.2612 19671.0479 70893.8831 17634.8075 11773.5109 11773.5109 8301.8663 37864.5711 14026.032 13648.5216 16342.5145 34287.602 15090.2875 11540.6471 18882.3869 14756.7753 41514.3947 9549.5642 27509.9766 8434.1141 12999.3587 25441.7586 12741.3702 23290.4077 337255889 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 73509.7846 17258.7749 15967.3372 21252.0036 14456.37 11926.7844 11628.2003 6634.5622 56760.4789 21932.0943 11608.5859 261581.821 27701.1241 38794.746 13939.9039 20369.1391 20369.1391 45729.2821 41501.9695 14096.9169 14905.4624 28417.0877 26119.4814 25890.09 14834.5349 24091.8199 11956.5445 43150.3611 24623.9393 26592.4656 11006.5058 14672.3313 26614.4436 35214.5068 20721.2497 384084022 PRI Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 8345.7549 6577.5241 7403.3942 14027.7108 6215.5405 11566.8225 4067.8358 2641.0225 5005.5544 13186.7346 7492.4658 154738.0623 10126.5297 143854.0781 21984.696 13944.2792 13944.2792 6735.2201 14806.0405 6443.2438 20251.2513 10691.2795 21527.8697 7215.3414 59810.7031 13003.5617 26722.7405 29030.8906 15204.9345 18743.7695 4031.0362 7187.6994 26685.7874 3691.9224 29698.3143 353211049 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 38783.3171 12567.4229 36955.9052 31644.0371 54846.9975 12143.4578 62988.7119 50880.7695 21075.6207 40247.9922 36994.6511 26488.7897 886761.9878 47497.8183 55285.2761 81923.7659 40348.7642 40348.7642 37985.7265 58833.7048 34661.4086 55363.1738 154551.4724 38469.4504 25570.3164 27846.2252 76675.4772 57860.3528 133100.0882 43647.9696 94003.3239 27217.7975 72500.0113 58978.6195 35233.3897 50800.9562 243082670 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium botulinum E1 str. 'BoNT E Beluga' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 10271.909 5976.5858 325795.818 62500.6114 4279.9678 2876.8793 4656.4141 4427.9122 77511.6468 6023.8094 6974.8728 4857.7818 2747.955 2747.955 3948.8138 9442.3435 7359.5051 17152.5363 24572.8442 2608.3348 2805.322 3359.3679 54313.1309 22148.7494 27724.7245 5779.7141 5205.5103 4842.942 4791.2004 25036.9559 28853374 mdld Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 150802.1564 56529.1033 49582.9621 39821.6842 14186.6499 74963.1504 159091.0295 77245.9189 186939.168 191982.5395 104381.3097 2980587.2856 377155.5406 173410.1099 292754.5936 117677.1285 117677.1285 36998.8018 165541.4288 78386.7335 85209.7071 107383.9158 245743.4917 145530.9806 97582.8714 63655.0537 121095.1391 240540.4721 175100.7662 139771.3397 65344.5217 102924.0098 131505.1444 97776.6132 103238.6896 110589044 APS_AprB Sulfur adenylylsulfate reductase NA Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 56648.0251 37375.0413 28440.6824 15820.0725 9741.4408 15324.6216 11627.9338 9126.1703 7164.1418 12305.8185 12047.4491 267050.6662 16794.1609 21348.7745 15404.5101 25432.2052 25432.2052 10022.3936 18313.2646 13823.6157 19629.0045 19157.9244 24593.2444 16719.3111 15481.9528 12507.1058 5117.9333 69588.1259 13829.1992 25177.7211 7888.2725 12807.6217 15908.4153 7562.4981 25549.8972 225791753 ppk Phosphorus Polyphosphate synthesis NA Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 15619.2196 7729.8588 19824.3055 27827.8575 7997.7969 8175.92 2907.943 7579.6065 19951.5166 14517.5892 242861.1009 12230.1708 11790.2219 11690.5456 15955.6801 15955.6801 17575.0598 19694.9897 8693.7232 27354.7414 49819.8897 12580.3551 8088.1369 10585.2534 14772.7108 9263.8908 22430.6129 28230.9047 19525.3949 15739.2361 13383.1782 12434.3 8280.7415 23901.4932 237684176 bphF1 Organic Remediation Aromatics Polycyclic aromatics Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8874.8046 56799.0783 4440.1037 53955.7027 6970.0956 10931.3993 26833.8423 10323.3484 15511.6721 13910.613 15160.1662 2758175.6521 8482.6941 27762.1121 17685.2995 24173.3501 24173.3501 5358.8458 19806.3054 11229.9466 18221.4558 13748.0747 5813.9783 13510.5929 14075.5944 23843.8936 15584.6972 35728.9672 18252.077 25758.7114 13226.5441 12420.0115 14968.7154 23765.6003 21477.705 356677131 dmdA Sulfur DMSP degradation NA SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5769.6896 9146.1554 2691.9188 10415.6903 5519.928 3651.6733 5932.7554 2549.3992 2549.3992 12281.5718 9548.8996 7066.9289 5705.7848 6375.5166 3144.5117 6815.771 6979.4719 4344.0646 8685.5593 6749.3596 7407.6597 2961.9414 3485.3737 4083.236 3696.7867 12300.0509 393759647 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 30540.2376 13765.2015 20325.2079 13036.6323 8581.9156 14076.1526 19335.8025 42533.7176 22756.0257 19048.5502 39502.0727 31054.3293 403985.095 33785.2983 70312.335 115747.277 28470.5824 28470.5824 56735.5673 27966.5988 16429.4643 28212.4358 19768.2281 120956.961 11205.0961 49416.6907 19923.6421 25144.5127 39704.5383 22952.8854 75284.3882 13528.2091 19768.0827 38341.4357 9856.5738 24979.8406 371770447 RgaE Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 28994.4373 18288.8168 11094.5389 14766.1277 5155.9412 17117.2668 15050.2205 10305.673 15463.4775 17214.1699 10882.3446 239648.915 56540.6222 31180.795 15256.48 11539.5335 11539.5335 12439.6098 44492.8397 15935.6513 19965.171 31909.0921 48797.6965 12601.7559 12509.4175 15410.4617 11430.7807 44364.4392 13840.7399 18057.9261 11935.8579 17908.7863 16783.0595 13527.6662 30360.4608 21106382 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 3660.564 4607.995 10956.8497 2513.413 2268.5596 6083.0308 4153.7532 3862.9312 2274.9349 2274.9349 3435.4729 7846.823 4835.2841 8089.3906 4422.3473 2469.4075 2572.3648 7084.3861 2367.6652 9782.2728 1625.0006 2961.265 4916.3959 2165.5344 5715.2687 319925415 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 8474.0557 5825.2428 12661.616 32004.5155 3340.3334 3428.1182 2301.4291 3605.4733 4829.9684 2872.7417 99648.2372 4375.4854 5602.214 7327.8889 7019.773 7019.773 6048.8514 7980.1249 9124.1533 6305.7515 12564.0725 2947.8843 2622.4996 13845.651 3505.6351 15864.2583 8011.4973 11772.366 6444.023 5608.8442 4731.3551 4204.7299 5739.7381 222107050 poba Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 11085.1648 9574.3593 15027.4347 14891.4356 8152.5479 8106.143 7367.4471 10843.4942 9013.9665 6170.5782 227183.6618 9420.2965 9549.0862 6010.452 7624.5638 7624.5638 7685.3548 19317.6042 17566.2236 13896.3368 15428.8924 12157.9936 7991.4749 4694.4858 14885.0255 5894.5026 19578.8373 15397.3153 17393.8812 5935.4076 10016.4426 8882.6561 5554.8675 14674.4835 294677244 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 73618.0476 11780.2746 21766.3059 16380.4494 7224.8952 6854.3392 11551.5771 29519.4435 14493.5469 31746.8336 11098.2298 13691269.1895 22813.0909 17517.4187 11808.7076 11290.5719 11290.5719 24156.5674 30385.5808 33113.7899 14489.6986 16871.4992 19851.7769 12189.5619 12111.5538 67561.5225 11725.6385 44225.5106 29186.9831 24074.1558 12621.3225 21463.0551 18139.1288 8919.8208 27199.3344 125861476 dsra Sulfur sulfite reduction NA Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 170665.5035 21256.17 202277.8776 161409.2125 185858.9581 107530.9909 82337.4806 487796.4308 94000.5744 139265.0759 193743.3237 131096.5599 4567162.5799 129785.4823 210663.0887 529246.7466 214195.3652 214195.3652 105333.0517 267655.1609 97537.1922 259225.9598 161248.1381 252420.6864 85477.4532 188410.0088 137860.8146 141455.7738 344744.6912 115465.2518 184572.2424 87647.3899 90064.516 112474.2645 81161.9518 195456.377 255299790 terc Metal Homeostasis Tellurium Detoxification Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 5553.3948 20157.0853 4709.9853 16471.2011 3604.11 6042.0802 2436.9378 140837.3993 5828.0897 6548.6293 4997.2863 6656.4646 6656.4646 4701.9827 11233.0639 6251.8675 10491.2463 6944.8085 4219.6027 3048.6424 6238.6993 10608.7347 4088.9772 13896.5102 5289.1311 9017.4187 5897.3754 4146.3138 4927.4077 5628.2049 7116.9637 189194071 ligninase Carbon Cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 50299.979 10873.1844 14364.3889 71951.9849 23720.3056 8860.6986 25543.5988 22287.6594 12814.3206 57022.2987 27232.8866 627171.394 25065.771 21588.3043 46367.5685 50502.1978 50502.1978 8777.6393 52721.1759 26256.7956 21324.6526 46952.464 77464.1155 17010.8859 20869.8705 27297.651 29894.4011 51983.4255 72315.1585 46974.4536 12330.533 26971.6025 27365.1518 19922.674 17712.5821 365425317 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 135755.2032 99257.1847 15355.8466 51404.5906 14065.9088 25594.7649 58136.2239 79240.9701 190684.6636 206576.5554 55755.1281 4746683.856 190226.3099 59817.587 43103.1014 105424.6226 105424.6226 30111.5138 63686.046 101756.4808 53225.1697 55042.3648 158882.3702 121309.8244 63936.2747 52606.1329 100405.1679 128105.3146 119938.4939 52374.7595 39039.6647 44181.5421 86882.9368 48867.8554 77111.6075 389866118 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 122118.128 24120.6635 30140.1087 89532.5312 27113.037 109308.8558 341244.9919 113707.8103 54423.571 47401.5048 38495.5009 561029.7414 36647.5787 88766.2757 48124.1883 41364.2199 41364.2199 32581.2788 56295.2323 32765.4018 46745.4432 25414.8278 23801.686 39052.6125 65593.4367 41674.1655 57016.789 88901.5367 73420.5554 47031.982 18274.3703 37848.2209 55015.1652 24828.5752 322820.0415 83772446 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4958.9447 3892.9106 3030.2738 3355.8157 3461.1508 4919.761 5866.4464 192452.1696 6644.724 5361.9557 4140.7918 2727.3048 2727.3048 3534.0313 10529.3255 4445 5968.1391 5823.0389 8418.2746 3094.0145 2699.6276 5908.7241 3142.3989 11363.9965 6774.8198 3090.413 3236.724 3590.4808 3074.6886 7917.2368 380879321 tktA Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 746889.8376 24262.933 32164.4704 34424.9182 276694.253 43936.8869 36415.6399 149764.8608 107360.1484 100836.9909 123638.0029 74206.1555 2141610.3734 158346.0245 126836.2816 308097.0218 62681.3196 62681.3196 53062.6951 107840.0913 61642.1508 126548.326 71532.4509 61393.0957 80505.5532 78901.1386 187874.7504 52395.1699 695833.2839 54523.3898 85490.6864 40813.9813 71594.2881 67858.8999 69035.8852 178144.3722 126630170 mer Metal Homeostasis Mercury Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 6975.3134 6622.3499 6454.1151 19456.6932 3308.5348 2996.9282 4194.5912 3034.3689 80538.5786 4518.0305 3804.4405 3039.0769 3039.0769 3135.4265 4710.8415 10142.8799 7745.3018 2902.5352 17313.1179 6968.9628 10240.4651 3534.5504 4680.1858 4864.3231 2815.3799 7269.0464 334732688 ppx Phosphorus Polyphosphate degradation NA Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 22110.5107 48483.5942 5136.8077 8635.5422 21234.7246 33786.0985 13649.7258 23813.2274 10898.3865 722453.2432 12269.2652 19275.1085 11803.778 13267.3094 13267.3094 9780.1054 39740.405 12705.3912 16355.1266 22958.7405 18966.9446 10239.6845 9069.9108 29695.0951 39721.1973 47096.7063 6523.1022 19205.2687 11366.5098 11743.7832 16267.0113 9981.9944 15676.3993 352094382 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4976.5585 8752.0148 8932.075 15202.4954 2235.1304 16258.3191 18605.1122 10986.7964 5483.2905 5372.2668 15845.6616 4391.8314 4391.8314 7099.8805 7130.9292 7853.2346 10282.4718 6594.1148 3667.8009 15558.6854 9310.3076 13834.2786 2062.4149 6070.5764 17143.4581 2212.1439 76152062 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acetobacterium carbinolicum subsp. kysingense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium carbinolicum; 181990.3177 332592287 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3562.4646 6204.1393 2179.2114 2442.5272 4539.2742 5107.9791 4262211.8426 11153.1251 3953.5862 7594.3087 7253.8323 7253.8323 50846.672 2471.2192 6109.6718 2456.2124 10297.5631 4738.7245 7132.8712 3046.3861 3715.1805 2921.3579 85705316 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 120964.7145 79109.0062 58860.6095 114048.9801 13976.9168 28931.2986 33327.0667 64892.5096 95765.6089 178344.3292 55664.1869 1017131.6495 96125.7276 140648.3277 74532.7927 65400.3654 65400.3654 46704.3625 129140.9207 47794.3719 123757.6743 91696.0566 92698.1031 52699.3203 44113.0012 78627.2777 43032.8033 129173.3907 161291.4049 80854.2079 33427.6805 84277.9001 76868.786 49130.681 42779.8931 149811649 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11654.6137 9576.6599 13125.3268 17601.0497 10912.6805 4524.9835 4052.8185 5766.0869 5787.1203 13056.9209 5190.2206 150790.7072 7462.9057 524842.2084 5405.9661 5405.9661 8655.0681 12836.0465 11236.4079 14017.1204 121474.1919 9769.8951 4415.2664 5943.0689 11674.3445 7143.1981 25175.5201 10438.0319 14312.3368 6250.9962 6852.8161 9065.9443 5704.555 9852.9409 169761077 nitro Organic Remediation Others NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 11794.954 11511.4014 10242.4907 11024.544 8217.8747 9649.2458 10746.2074 8898.0019 18564.4866 10207.9664 12876.5319 111597.6527 16935.4693 75073.1615 9978.5403 9669.2185 9669.2185 5754.7969 20041.6012 8162.3656 42092.4979 25808.9197 15282.9169 8733.2328 20470.8461 16062.5654 9589.8791 36459.8521 17808.3738 16225.6303 5831.0458 11330.6627 11888.5254 10862.608 9606.3443 295110902 ppx Phosphorus Polyphosphate degradation NA Synergistetes bacterium SGP1 superkingdom:Bacteria;phylum:Synergistetes; 14404.3219 6496.3827 2064.4561 2916.2935 4046.9433 6530.588 3005.6951 73788.603 4581.545 6287.9589 4301.5123 4301.5123 4608.5802 11897.465 5479.1975 5037.4465 5149.17 7679.0872 4945.4506 7552.1917 6054.3392 3151.0517 7730.1872 11713.5742 1844.3715 2623.9166 5148.0313 2339.3947 8290.2464 297161515 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 8795.0983 14449.9475 11295.833 4225.0497 7258.0594 3143.8853 4684.0352 7315.0377 3550.9215 224224.3573 7247.6449 7774.4878 6445.1781 3891.2712 3891.2712 4848.1558 15138.368 8376.1241 22776.0909 14631.4331 11852.5603 3800.6473 5669.3147 8572.9314 3997.9753 16303.4587 13161.4211 10294.2528 3919.7787 6940.4356 6267.9128 4332.2085 8714.7699 343918460 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 13266.8479 8160.6907 12170.0231 3123.1596 6499.6028 11510.533 16527.5612 11279.4355 5997.6053 382226.1432 7499.8145 9929.2262 5075.0414 4667.6354 4667.6354 5946.351 27348.7944 14266.9493 11339.2436 9526.0564 7943.3918 4813.9199 6070.161 13343.1441 14930.5134 25888.9772 15290.2842 13662.9092 11490.6733 8552.3174 13882.8081 12358.5062 9381.8432 281199024 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 4951.3904 4834.9523 5196.7426 9973.9032 779253.8124 32714.7259 81553.0771 21016.4881 9258.3588 2290.5965 2290.5965 10639.7568 7660.8024 497923.0473 2724.0288 6878.8937 2331.8498 24722.9841 5835.4491 6375.1976 3023.509 3180.2635 10092.9508 71554888 alkk Organic Remediation Others NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 13482.3691 8045.4522 6504.0374 19118.7085 11585.2386 8689.2838 5606.1119 10535.7591 13878.8811 13503.7833 266654.7408 10687.3024 11440.6202 13112.2073 7037.1231 7037.1231 15235.4514 15005.3167 14171.078 12822.5508 14145.9768 14601.955 5584.729 6510.9556 17417.9902 6058.2248 24431.5616 14572.8365 29262.6889 16400.1785 9690.651 7644.0737 6327.5088 16357.5076 67088759 arsc Metal Homeostasis Arsenic Detoxification Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 16867.1967 11412.856 21232.7035 49817.6141 6629.673 11139.6635 14158.2361 6491.661 14365.9092 18489.0893 9624.9328 697443.6505 24748.5617 16878.4413 14678.5692 9130.0697 9130.0697 9235.1427 34343.5588 16937.9368 25027.754 59548.5885 66226.7908 11009.1075 66766.5783 18542.6861 9520.647 37649.7641 71484.979 19591.5325 9214.9694 11332.3852 12178.4431 9892.106 24196.3828 336301057 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 18324.2182 17854.6691 10892.9568 14418.9605 5362.1393 10504.4863 30713.4965 17676.9494 8950.6603 22927.0114 51712.3985 208875.9409 12708.9575 18438.1184 8643.8459 31498.0316 31498.0316 17954.9931 23118.1445 7558.7977 7140.6008 24538.7786 10006.1139 19999.8708 32506.3024 50763.8119 7464.3692 33193.7551 14191.267 25718.6964 11269.2928 19800.4938 13730.9381 14078.7197 35506.4434 356659149 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5554.774 4599.0165 5327.3346 12768.1679 6242.6434 1965.5704 5112.5505 5748.3384 3582.9273 7450.8657 3355.6837 3355.6837 3869.0567 8976.5906 5180.1992 5690.495 2745.7017 2755.0598 10254.6745 3508.0508 10009.4503 5608.3158 7147.2078 3231.6075 4023.6526 3847.6441 3323.0396 6619.6411 150014776 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 36070.4308 18926.5855 32841.3129 13881.0638 13634.6488 24101.8608 76836.2212 50615.0696 21336.217 50206.2399 19172.9818 1055791.1877 36731.5007 29430.1452 197155.5744 27785.7434 27785.7434 28932.1188 39713.5724 27761.7555 219977.2892 47350.333 25543.6461 22137.0955 14985.7127 31407.3688 39437.3138 97295.0516 47560.1299 34519.0801 34809.1597 27447.1273 22704.7097 17714.4479 59776.6541 377523923 narg Nitrogen Denitrification NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 17534.8479 19416.136 10340.7308 17222.7865 4712.3022 11141.1652 5784.9167 21050.9255 14299.9782 26875.2773 15114.362 291192.8795 86970.1853 17463.6159 29944.8769 16419.1124 16419.1124 8963.4624 22145.3495 11790.7128 11189.0915 28067.6996 16268.4532 6976.6772 23907.2988 22868.8287 19950.4038 34093.2416 10871.1011 21845.6816 12464.4014 35493.2005 14882.8521 8578.3806 23111.2943 87283696 nitrilase Organic Remediation Aromatics Other aromatics Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4591.7613 31655.7366 86111.2406 30324.4609 7473.8321 14514.248 4272.8331 4776.3063 2451.857 332887.8651 9697.6833 8006.0384 7449.5458 3576.8672 3576.8672 2595.4097 9551.1135 4496.892 5977.7602 2260.6141 8654.0016 9185.7544 34395.4213 12366.6953 14969.0472 8557.0267 3505.842 4967.0161 3297.9632 12417.6771 379045194 cysJ Sulfur Reduction NA Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 44406.0629 6879.601 5892.626 4103.8367 4169.7112 4135.7469 666362.7657 6660.3675 6358.9892 5820.7975 5820.7975 7525.3747 19997.5515 6595.2899 11182.5071 7608.4578 6919.2635 21608.4938 2271.1865 16214.6728 8153.7278 11655.3475 2933.1659 6477.307 4275.8782 353210385 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 10752.499 12444.5526 7542.1743 7170.2301 83959.9811 4128.774 7658.2446 7454.0968 10743.5099 930743.9001 3202.9069 5548.3842 2362.1098 2957.9928 3920.0301 219119472 nitrite_reductase_protist Nitrogen Assimilation NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 18832.1746 10633.7047 14593.541 16711.5506 5248.1268 11833.9066 10371.0888 11550.26 12393.0854 12597.6195 6062.8672 349383.3152 19798.5723 15150.5604 9768.9127 5886.8143 5886.8143 9398.8671 18356.3291 15909.1801 16322.164 11630.5164 22336.7031 7872.0878 8267.0948 16450.6063 7270.4397 26249.2762 15421.1821 18588.8201 6937.9703 10870.0886 10347.3447 6163.1745 26340.2087 389847255 glucoamylase Carbon Cycling Carbon degradation Starch Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 4595.0176 4933.3063 8659.8878 4552.9237 4942.4727 3136.2004 4055.4798 4977.2242 53352.7901 21303.2341 10221.2901 3227.6882 3227.6882 3737.9206 14861.1686 4701.3814 9140.5509 6341.6672 47867.4784 3248.0614 3569.0895 10509.8892 11029.9769 3683.0597 9249.1086 3149.0848 5821.6652 6442.3287 2420.3674 7557.4088 254473616 fccab Sulfur Sulfide Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7554.9699 9185.6639 2362.1854 3467.7511 4119.5261 6867.0053 4334.6124 4620.5427 5714.1265 9655.6413 5592.6266 2930.6158 397087464 badh Organic Remediation Aromatics Other aromatics Chondromyces apiculatus DSM 436 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 32079.5281 172245.9281 17737.2038 41547.2275 21398.9597 3760.6859 24913.9321 16913.7594 31251.8088 10098.1384 18960.6266 429186.6963 10389.4101 25045.512 31208.344 27693.3005 27693.3005 18495.2733 18896.4251 13619.6157 60457.4991 26705.4751 14069.4669 7132.9274 14999.1888 20808.2724 26821.9464 11077.6901 17443.9604 19067.4325 8084.2372 15301.6084 26512.9767 7544.8129 11529.096 338973617 chnb Organic Remediation Other Hydrocarbons NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 15003.27 51611.0071 5303.6082 4586.2146 18525.9335 13120.008 6315.6546 88104.5668 15026.9478 8901.3378 12692.8937 16955.9616 232234.1967 32833.5615 21935.0304 184651.4879 18154.8032 18154.8032 10907.7449 20761.3464 21235.7908 13269.2608 14566.7389 106391.2679 7116.8487 15038.4786 25253.0977 14483.5008 62994.0733 26609.7199 21888.1465 9184.0396 18906.4585 19840.5632 37692.1524 25172.7417 89512612 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8777.453 4866.7936 6606.5191 5782.5567 3509.6988 11063.0653 5523.4552 6030.6058 4452.037 629346.7272 9746.8916 11681.579 4815.7868 8440.1825 8440.1825 5722.6719 12994.9335 7250.227 6309.4909 11280.1074 8054.8807 3920.7064 4465.8607 10962.8872 4295.0685 17895.4302 4430.4612 9952.0715 5500.2563 5578.1355 6427.2726 4333.4458 8613.0691 170720068 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 15983.6622 5978.7801 5237.457 2983.5663 9662.6975 11141.0326 7935.5701 10864.4012 10684.0061 144245.5295 22159.67 68493.079 10905.4563 14206.1146 14206.1146 6724.403 26509.4727 10470.3785 9195.6439 18417.5092 35389.6313 8179.9326 15590.9231 10630.2079 27968.1103 73957.3061 26379.1308 17710.6949 9079.8298 55053.4449 17301.4594 13766.207 17301.3368 86749821 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6816.6412 124894708 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 61682.9273 17622.3536 35846.9815 24772.1071 15615.6379 4799.058 7734.8966 19448.4569 13190.1908 16841.4741 24878.1002 12722.4822 436310.1156 30765.8636 19165.692 57961.624 35253.4769 35253.4769 16267.9193 37698.168 23390.8132 18462.6219 26472.5336 25575.5146 9844.8406 12991.6597 42477.6038 8398.9547 53258.2056 30746.6115 33148.584 10546.8584 17875.0666 16953.5798 9469.9677 28068.0921 319750826 linb Organic Remediation Pesticides related compound NA Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 18142.2058 6604.9143 9589.6417 7134.5454 14808.555 7422.7144 8707.9128 11847.233 14423.571 178464.3684 20112.5215 14200.2879 10913.5444 10855.0384 10855.0384 8988.0679 23399.6922 28898.8603 24851.4125 28496.6517 10609.2432 9277.5031 16869.2176 11510.2509 12161.2327 34424.154 43688.7526 40661.6007 7448.6991 7921.9495 19899.6906 5949.0923 16034.5085 237884412 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 38113.8083 21614.9998 65201.0329 7933.7233 23097.0457 22460.3878 28335.5475 20839.7591 47439.5574 127044.3661 89322.4974 40351.655 1305738.0773 40837.5342 109254.3665 127926.2267 93621.2647 93621.2647 24050.7057 52916.3322 31622.6344 25458.6106 79017.8524 12496.2897 101609.8925 63369.196 25748.4264 82790.7276 95173.2986 21192.3321 76454.0803 28844.2368 30449.5779 32584.4772 23990.7939 50066.0876 333488662 terc Metal Homeostasis Tellurium Detoxification Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8004.9973 4922.9359 2885.6547 5944.7375 3281.141 4941.3544 6285.1885 19010.3109 630715.1066 10329.0147 8271.2084 8026.6205 4119.5867 4119.5867 6716.1814 16142.1457 9438.5608 7207.0454 7157.6528 6715.7066 4848.2388 6369.2745 9168.0541 5587.2903 15349.7144 15344.7121 7307.272 5285.8439 8489.6397 5572.3155 4136.5683 9273.8896 67158162 one_ring_23diox Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 203174.8045 28459.9109 224802.5049 292619.8752 93164.4262 115881.3577 94390.0972 333985.9067 187383.1717 122452.4297 129710.5747 108636.1575 1269361.2521 207155.2908 81825.1947 148626.8486 118673.1887 118673.1887 105089.2088 103791.7038 64481.9699 98273.6427 81569.5934 57623.4935 39021.4811 75284.8885 82792.7581 71085.0545 185277.0527 85959.6827 119105.906 70804.1177 65011.8645 122840.6098 43934.8995 1365590.1448 3378405 hcab Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 10774.7572 34336.5029 9641.6152 10143.4619 6732.8004 5687.8746 15282.3048 12703.0999 10756.7096 15505.95 27987.6499 1233739.3446 43388.3213 97771.5088 17375.86 27874.6594 27874.6594 5728.7712 14029.7457 27297.974 64810.7253 13711.0782 9288.7578 7957.2627 9935.1383 26491.4912 18299.4346 59502.0799 82101.6205 21368.4022 20489.1481 15258.0803 16459.0283 12075.6172 8324.0493 339490660 amyA Carbon Cycling Carbon degradation Starch Leuconostoc sp. C2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc; 4431.8144 11714.2388 4238.0606 4703.7091 2186.4966 37363.6106 37404.5677 80968.2894 7528.4547 5968.0779 55178.3197 5164.993 5164.993 3422.4835 14905.6116 4220.094 9346.8465 5856.4865 5129.9835 21769.2139 4568.8907 18832.1778 4266.7688 350563904 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 35543.1295 11509.3801 17060.5629 10213.2519 14041.1919 12206.7381 11020.249 12387.7984 21818.6881 13537.1347 251580.6324 12658.7579 11818.2979 132414.167 7220.0434 7220.0434 12085.8114 20647.0981 9590.4726 19531.1553 34351.0416 18083.12 12745.0509 11055.3558 19484.24 14755.9824 28703.9696 15959.171 28270.8104 12495.2711 12157.7559 13421.342 11920.9171 14107.1115 340347816 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 4126.5712 4190.2899 2429.3815 2266.5886 3211.3588 4063.2094 65551.1228 5123.1733 2151.2129 2151.2129 4277.7234 7016.2833 4700.6232 5707.7618 4084.8143 3543.4572 5712.9761 2559.3348 8361.9029 5073.0571 9020.9136 2628.3239 3460.6253 3455.1154 2587.8873 7165.2736 116620454 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 5390.2019 4400.1127 10873.9935 4345.0862 22007.5238 2892.7976 10306.0852 2196.0352 60553.5024 5235.4468 4302.8517 12784.8507 12784.8507 2908.2047 10230.6764 4894.9693 3911.7595 25482.4566 5970.2858 2498.5387 3536.5274 5800.6116 2843.5535 11087.1019 8208.4333 4188.3253 3808.3786 9053.6238 3825.9031 8128.9902 254464129 SoxC Sulfur Sulfur Oxidation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9170.2101 19439.6773 13754.024 14887.5264 2741.9627 11613.0051 3949.9567 9062.0722 8417.8658 15319.53 244100.7428 11267.7718 10151.685 6299.8554 10228.3854 10228.3854 14161.7965 20875.3872 7073.9107 11453.196 5029.2752 9357.9259 6173.254 7342.261 14617.5144 10260.0105 19004.7801 9232.7056 17330.0923 11936.5171 12548.2502 11459.8157 12118.1863 7211.9218 302442226 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 23809.4342 26930.0261 16516.6538 43327.0502 26095.3871 16366.2044 25562.1767 5500.1439 28205.82 29466.0651 30550.2192 549868.353 26449.6133 29821.617 257743.5694 45770.2043 45770.2043 277848.8982 45744.4819 45350.8908 15389.5092 35257.6553 19261.9633 15103.4253 29415.4463 70067.7801 69415.2881 73184.997 45821.0291 67627.7216 18401.6184 26137.4163 60292.668 19264.1596 48374.5322 142230 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 10131.9408 13471.6041 8820.028 15465.0041 2741.2904 6209.6773 2530.9213 8452.5579 8596.1031 13175.5863 63754.3838 16485.1164 23384.7703 40611.8067 9228.4452 9228.4452 3614.4001 25009.4314 13195.1713 4474.9096 19160.7171 10042.6892 9943.0768 9791.0251 16422.9039 9266.9552 20926.1321 9576.9276 30880.4426 109882.2207 9749.3845 27044.5331 5153.464 20016.3369 117999993 ophc Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 55521.3051 72015.3492 18929.3586 21077.6531 16643.6099 17332.5257 21523.0806 23453.0853 17941.3898 35982.9934 378841.9845 16869.7513 46293.3741 23629.9568 32785.5151 32785.5151 13104.1564 40772.6792 23755.4385 22344.4851 76453.4288 16487.4781 30509.7301 18293.1411 21173.1147 13877.0095 53567.6916 84953.4999 32387.6495 9730.7615 109054.5448 44744.0701 33063.8769 30028.4126 15788895 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4660.19 41529.7569 2432.4267 3825.9968 60985.185 9671.4601 4396.8409 3859.0465 4718.9091 5061.851 4583.4372 7848.7348 16435.3151 6219.2945 7618.9383 2719.1091 3435.6049 3652.2031 2437.9864 353236111 rgl Carbon Cycling Carbon degradation Pectin Piriformospora indica DSM 11827 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 7186.4465 7068.4202 18054.0965 3862.5191 9619.537 2596.7727 5632.8562 6385.461 3807.2869 128006.6968 15347.8406 4727.4116 12265.6161 12265.6161 9600.6162 11174.7009 7104.224 8864.2461 5506.8363 5945.8099 3438.9587 3914.073 10290.5757 4513.1587 21976.1189 11922.6361 11551.8089 6966.156 4065.2972 5374.5908 5662.8858 8155.2339 78223987 arsm Metal Homeostasis Arsenic Detoxification Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 5645.2735 4456.8027 3286.8136 4532.3641 5094.9196 123621.659 4950.0279 4477.2914 4286.4104 9247.0153 7649.5264 6204.4367 6859.0116 4667.1067 9988.8527 3308.8093 12616.7113 8639.6961 7133.9091 2633.695 4955.0448 6141.9199 3786.1628 7303.6941 346995252 amyA Carbon Cycling Carbon degradation Starch Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6125.4955 25126.549 13230.5312 3506.5118 2763.6223 3748.9636 4794.6235 2957.3556 5176.8083 2482.5113 8806.254 4686.118 12369.3971 4499.3072 6057.4397 2714.8662 3434.4506 7016.5083 3388.7498 8276.8408 6195.7071 2160.8914 3926.4226 6801.5557 3245.3252 6983.1433 377816191 cysJ Sulfur Reduction NA Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 12777.3395 16737.4113 55781.3337 28827.0506 25460.104 36138.7899 263506.6266 61009.2859 21078.388 29000.2659 15866.1076 3583337.941 24769.5057 230773.8707 15258.883 95774.6539 95774.6539 17762.3701 17056.6264 12842.6322 47575.3838 254204.5668 10383.2663 5079.7614 14811.7551 48134.7363 26111.6293 38053.2675 27419.4676 30441.9402 14842.851 12614.1121 29349.1129 13694.7343 5795.2888 116672618 cmci Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 31030.0515 5550.3215 11722.1822 11153.249 4781.619 15404.9087 151480.5582 15577.3629 132123.5427 24300.2831 21026.6072 747618.1416 20167.0281 377391.7148 22741.2967 14340.3489 14340.3489 10054.047 28144.3705 15402.3693 10914.1495 19680.1757 50343.2795 15855.5572 37530.3187 17771.18 35601.6718 73667.9704 14391.4847 19794.7716 11298.5897 19094.0546 79012.5845 13905.2412 16568.6763 78513570 xylc Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 51760.3468 50183.3666 27318.0565 26082.5597 6948.7555 11483.3886 19349.7489 21654.2357 28799.6797 48432.3939 60009.9483 681581.7398 33633.9398 28793.3968 28841.412 33950.7582 33950.7582 29050.117 55730.3253 31587.6339 40514.4526 35773.5563 47217.4707 16867.6483 29091.8287 73046.3908 23303.3213 24143.4734 26249.9513 55144.4152 14857.5783 27547.9362 27154.0017 15006.6219 31553.3264 206579037 badh Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 19343.9443 13189.59 10078.7883 28203.9131 8131.0996 13298.6147 10711.9056 12451.667 19492.2955 19063.2942 312513.1215 19874.9896 14179.1637 16087.5291 8602.0542 8602.0542 10631.0705 30573.0293 144178.1686 10017.0806 35156.23 15418.1484 6990.631 18957.4653 25006.4827 10734.3182 35659.8343 32405.072 31201.1343 14560.5274 11166.8447 16135.1528 9117.375 25809.1702 365748241 arylest Organic Remediation Aromatics Other aromatics Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 5866.1708 57037.8242 3077.2635 3348.173 5616.0265 107014.7856 5014.8353 4616.9738 3771.8828 6646.4817 3302.3985 19117.8334 5574.3021 5464.5428 2396.1979 3237.8434 8836.0993 6731.3604 2782.8772 4357.6617 3016.0704 13474128 urec Nitrogen Ammonification NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 11400.7136 48658.2767 10111.5664 5420.5902 41068.0672 4533.7263 33430.5807 31788.0609 24878.8833 165865.2929 6167.4837 20426.1426 121239.8597 9830.4902 9830.4902 5872.5722 20428.4808 9629.4371 58748.8804 7172.5838 109538.1751 4640.5973 14611.5819 26267.053 29433.677 19914.2059 17780.0788 18350.0336 2800.8518 16914.8343 9619.5032 71618.3279 10409.482 383814878 phn Organic Remediation Herbicides related compound NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 6572.6597 20580.2069 9825.559 19258.813 10447.9464 15155.012 11073.3123 11971.7459 22060.4754 243275.3488 21384.9463 37022.5428 130395.9336 5190.2936 5190.2936 7140.8633 22836.8695 16907.1766 122917.7298 8214.0089 4529.6121 4654.9471 10312.9214 19487.7779 11676.4262 25891.2858 15536.4961 18793.5348 7202.4949 19478.5109 16669.6216 7117.3547 16443.4272 58616642 pcpe Organic Remediation Herbicides related compound NA Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 11056.9799 7639.7858 95321.1615 18990.4047 21837.9472 23794.2854 33934.6674 19950.6119 181079.4444 12363.9326 28394.9 12901.0724 10094.8268 10094.8268 15829.0229 31431.8991 16862.7238 42274.1919 18242.8532 11432.9949 13772.6595 11120.4421 26062.0514 27779.9181 48948.4538 43161.6309 20991.1265 15279.9498 18171.4254 17955.845 9998.1847 15836.9963 351683431 cysI Sulfur Other NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 8912.3724 13376.6557 7495.3921 9369.6192 37954.9592 12369.5985 13893.72 122807.1033 10877.7059 67714.9571 11387.5417 17976.1461 298482.1535 16045.6764 24305.9657 19545.4009 8316.4803 8316.4803 5364.2692 35502.7935 18843.1507 56267.7312 24026.9727 14673.7024 9788.0777 17904.4675 22764.2896 34194.55 51083.0215 45553.8928 18740.2676 11419.0761 14399.8605 20799.4428 12397.2427 9852.9168 343798032 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 12180.1456 15206.5723 15718.9843 93067.678 7994.1843 8566.7939 7850.7417 5291.8349 11730.2638 17086.624 21940.5446 347082.3986 36936.365 7855.2735 23502.7917 32764.5959 32764.5959 297203.3888 19972.0101 8899.7636 8456.235 21725.264 17815.28 8287.7125 46472.5385 28024.7395 11316.8713 29643.7965 12633.8271 25862.0175 6473.2818 10699.2196 14457.4682 10804.4809 12486.5677 332798557 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Tepidanaerobacter sp. Re1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Tepidanaerobacter; 30850.877 48400.6078 26909.3973 34511.2638 72765.9883 11041.4771 100842.8669 180938.3741 35833.1654 31510.8083 36907.2157 53259.8626 637427.5436 84519.6085 43280.8052 92201.7223 50249.4212 50249.4212 27781.5267 69419.8314 28876.3068 37977.4096 36255.527 51270.7925 21703.7801 34365.0946 77146.3769 33453.7116 120719.4851 36416.5289 53691.6131 20087.7057 33036.0649 46623.64 24466.1167 64568.9997 322434801 pme Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 118315.7897 22106.1964 90116.2606 134285.8066 96558.0149 47795.2034 81024.0941 596131.3869 81319.5734 100943.6919 126100.817 141822.5615 2734851.1607 114842.0052 121225.7048 408965.1282 129024.0428 129024.0428 108467.5423 119374.7373 227383.9058 120393.8671 122590.0677 230469.6216 84797.7133 68319.1324 300849.9898 290676.8074 212064.079 85385.0018 154501.2255 289871.0527 87995.0534 76143.6977 374731.0884 172397.5332 227273366 cellobiase Carbon Cycling Carbon degradation Cellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9130.9575 5247.7189 3572.4712 4286.5067 3016.432 5024.6757 9443.5797 73367.2295 3706.1938 9526.6834 129145.9453 129145.9453 3791.3628 13515.2491 5045.4158 6004.8075 29464.6366 6033.8028 3663.9376 2470.2199 5597.4479 3586.2738 10909.7228 20529.0327 7207.5287 3059.0669 5871.7762 5531.8633 2947.1761 7705.2202 260654255 nitrilase Organic Remediation Aromatics Other aromatics Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 3893.4921 5658.1082 6754.3862 2972.9756 84028.9648 5609.5748 4387.1565 2273.7472 2273.7472 5743.9768 7188.6827 4405.6668 3881.1917 6110.9823 6074.9877 9589.2569 2641.0444 2528.0513 296845696 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 116221.6736 23473.1258 36668.2894 21354.4745 41158.8043 8408.4861 35079.2264 45373.2605 48318.7099 42111.9693 172558.8289 112638.5891 426888.8214 53670.3064 104601.9917 179356.0992 51610.7316 51610.7316 27630.5781 68984.7288 25948.6722 138723.4819 87651.4738 21089.6981 42334.6587 42431.2583 51471.195 88231.2402 128122.891 66033.597 220777.6658 24361.0125 47351.1705 121923.3128 26504.4323 142664.2038 119898813 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 23871.5137 17703.3206 13994.5806 5510.1046 4025.6134 50771.5329 7626.6588 10656.5968 14658.5254 11560.6937 495088.3151 9950.7601 18847.2857 12978.0553 29216.8539 29216.8539 15981.1516 22983.6227 130313.6217 20689.7239 21122.5148 17344.8609 10415.5758 17171.1897 15448.1791 28336.4027 35242.8909 21108.0597 24025.3174 9015.3285 63009.3673 17096.109 11622.6559 26890.5725 39973413 ara Carbon Cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 10603.3783 13729.381 5440.6723 36117.2175 4498.4618 3925.571 6519.8425 9235.4687 14065.1403 7573.2148 413715.8597 16641.9046 48775.5929 8784.9247 4518.3876 4518.3876 9768.2388 16359.018 8301.5717 6500.6948 23652.5104 12394.3005 4008.3664 15293.4054 10496.1777 7181.6851 12214.8266 23893.311 11922.5143 6795.8508 16324.6041 11924.2643 7706.1791 5596.9603 356690818 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13913.2896 89349.3873 9785.5554 4712.1272 63608.5573 14749.8811 6901.0218 239299.8908 67384.368 180824.0066 22445.659 11223.9375 15789.3696 9813.1986 9813.1986 21555.2672 27131.906 12165.8785 22765.3702 37447.5989 31908.0519 29444.9185 18997.8476 12559.2465 35618.8076 141231.0155 17359.3496 22112.8408 7417.7711 17009.7568 16748.1408 11958.7589 61198.6509 28852189 trzn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9608.7757 7984.6731 10970.7911 2190.33 22788.3865 3616.2957 5911.9884 2432.597 3765.4006 5226.9833 378549585 amyA Carbon Cycling Carbon degradation Starch Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 18610.4285 40999.6415 12176.5498 41226.4972 14403.0888 8731.2056 8685.1722 4483.8972 46278.6799 14502.6893 22954.7136 254957.4234 33164.5167 36879.6217 105791.7379 38124.7364 38124.7364 25986.451 38272.5585 17439.6428 20354.3435 19220.3937 39322.6273 10696.1565 23959.0651 78857.3596 13081.8263 44960.4085 25672.9396 28211.7483 7763.3715 15162.0806 18902.7348 21309.8783 57821.1633 389878289 cmci Organic Remediation Aromatics Other aromatics Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 14873.9302 7577.1127 9939.0524 16086.0703 15407.4926 15176.0742 42840.9904 7940.022 4077.6785 231598.2116 7829.7054 9696.8057 18294.2781 2848.9944 2848.9944 5032.2613 14134.9513 14762.2298 9733.0173 12585.4118 7973.497 12817.1254 5815.4523 14225.4432 6163.7007 14848.4712 11215.7177 14247.231 6814.7593 10050.4192 7517.8599 8911.4637 14166.5191 254509987 ppx Phosphorus Polyphosphate degradation NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 15544.9273 131605.1823 6779.2274 26386.4761 40815.4644 15152.7699 23102.011 32208.5937 28181.3903 39524.1025 18333.0707 311090.3308 44113.3595 21458.4209 349451.2579 20999.8631 20999.8631 52386.6335 40455.4787 16586.0392 30279.5888 26800.1056 11006.8249 14149.6656 19103.4427 50091.797 44034.1912 119745.4266 20131.8454 28389.899 20813.7537 34936.6699 29177.9145 21660.8456 145445.5516 294815711 amyA Carbon Cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 16737.2838 11492.8801 10665.5673 29054.6778 8314.7044 6181.4898 11927.2029 11544.7989 6754.3705 171683.9678 17121.6118 11230.3419 11159.4257 7466.8344 7466.8344 12946.7628 23517.6214 17277.355 13896.2752 170403.5943 15853.2409 13661.8737 8812.0719 15958.6242 15031.9487 30259.5448 17898.7528 23821.3529 13106.7578 14728.35 12565.4618 10689.744 15661.4605 145304916 amyA Carbon Cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7009.6836 21272.6133 7200.7956 26998.5723 11788.196 3813.7487 4185.6151 5583.3555 3240.2495 85330.6126 4454.4406 4698.7685 6093.8999 3309.6288 3309.6288 3343.5163 8936.3006 20963.3284 5625.2224 3865.5478 3380.6293 10011.2425 4229.2411 10723.512 9873.8834 19906.4562 2899.9539 3595.2194 3616.1361 8865.9685 6739.733 219546809 ppx Phosphorus Polyphosphate degradation NA Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 89281.4607 26432.8011 21481.6234 30806.5525 37921.3217 9092.3231 30799.9139 31882.4545 74655.2258 52014.9849 76717.5918 33256.0443 991499.4516 65507.0333 41767.9212 43923.7606 29451.043 29451.043 33350.1924 61042.1769 44255.3081 37096.7847 49705.1839 58350.5254 25206.7426 25448.6332 50329.9914 29237.1639 85095.931 34981.6555 52190.1853 24899.2994 47111.7474 45093.4099 25186.305 52209.0226 292631693 ppk Phosphorus Polyphosphate synthesis NA Bacteroides ovatus SD CMC 3f superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 14344.8804 43706.6997 4848.0139 4686.5125 7116.1751 26761.8635 5425.1838 16061.1546 7166.7117 7166.7117 6531.1803 15022.8729 6906.5145 7097.1505 7136.6955 5581.498 2861.3865 3179.6342 3035.566 12812.9972 13327.6622 10016.3646 3342.6669 7691.631 9716.2533 3227.8306 5859.9037 89056319 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 12228.0432 7861.9493 14877.6959 5009.7715 8234.5275 11915.7115 5961.6074 13623.3516 12653.5911 6303.1817 219106.0153 31807.6468 15797.8181 9063.9302 7501.4024 7501.4024 11111.2503 19133.685 11713.4478 14650.7445 15180.7957 23683.0176 6333.2104 8097.6924 15260.2505 6703.5839 21100.0088 9468.7795 19554.4589 7367.3037 10587.3904 10850.6469 14121.89 21956.26 393180528 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 24429.4503 16550.1824 34325.1602 18179.5962 16209.8563 20137.2019 17205.4879 16306.2258 17149.592 24915.5471 13223.6711 658811.8744 25667.0717 32762.8577 20098.9907 13606.4003 13606.4003 16128.5612 34883.5781 23847.1778 47055.3745 34044.7329 53725.9087 15012.4518 14179.9739 31167.5062 18904.8793 91070.6631 26627.3906 37774.9149 14656.7705 18552.0004 21108.6566 46443.178 38156.5521 299766972 ara Carbon Cycling Carbon degradation Hemicellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 53652.0567 262461.3197 28114.026 27513.0279 7252.6481 20564.4323 21496.7371 22573.7828 28879.4294 32167.698 16340.7597 499179.9769 30657.448 22353.2229 30687.3241 18913.1844 18913.1844 18837.6556 41443.5615 20801.4728 28459.4652 26357.671 31337.5777 18566.3882 14403.7556 26476.1779 16579.129 58073.8548 13468.6145 32937.4436 21764.187 20323.5494 21999.8103 32170.6966 31019.1652 254443492 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 21467.738 65746.5709 8476.6215 23903.4873 24362.8456 2538.0038 10639.0788 3262.898 13711.5177 39621.9285 14786.7064 308212.3449 19230.85 14795.6293 20932.72 10161.5724 10161.5724 9528.8629 27845.628 13539.6434 8705.921 13801.6508 11309.7974 5149.2984 9859.653 24689.5664 6158.3467 40550.6096 22490.4337 26505.9976 9036.6916 14393.1579 11880.2337 6680.326 13669.0174 333829661 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 6811.5753 10696.5303 13449.3241 3926.4952 6426.1006 9208.8959 91250.9135 4234.0979 4695.2254 10590.6711 6747.8499 6747.8499 9819.5888 7252.3077 4159.7736 4698.9881 9043.8087 7040.4447 6083.1264 1833.5729 3892.1202 3086.6452 95109326 nitro Organic Remediation Others NA Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 21733.0427 21646.1311 10086.2395 24470.2132 26498.4829 10018.8777 9020.8578 5433.4705 13664.2993 11424.5219 25332.4087 516695.5664 17908.5366 16733.9313 7637.3589 8064.8037 8064.8037 11111.1144 39388.0054 123990.7905 13485.5073 21282.5143 21513.3903 6790.8565 10934.1332 17375.9899 21404.7308 29358.4836 14302.2025 207860.3569 8041.436 11503.0463 30375.7721 9720.331 53611.9364 255957291 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 19170.7302 16006.9552 27253.6237 13332.9036 7716.2118 11074.4673 11946.2955 14389.9585 18667.9466 18310.7838 11162.4534 609569.7592 16787.9171 16530.906 35979.2769 16605.6076 16605.6076 15620.2252 23554.6211 15568.8676 19320.5706 17381.8012 25859.4416 9322.3454 8330.0289 20767.8311 11131.8349 38876.2192 9872.8977 19823.162 8606.3676 12422.7392 15663.7162 9381.5982 21364.7594 392594387 badh Organic Remediation Aromatics Other aromatics Coniophora puteana RWD-64-598 SS2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 25531.2929 20953.8058 10543.4437 7713.2793 39764.3967 5021.1597 11299.1706 10446.0855 7197.0021 40867.4237 19572.9012 9528.6037 558284.5039 18390.5396 18481.9856 17926.7962 15586.5815 15586.5815 13431.0319 26612.0188 18545.1681 23504.7347 20415.4528 32315.6377 10828.5883 12599.0881 24557.8264 11860.915 44710.9738 24215.2649 30696.4798 7467.0207 15254.3411 15733.1228 8738.3158 19529.2675 32307993 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9604.529 8510.6993 14056.0334 23561.9385 9973.8485 12182.9147 14811.9752 36172.3949 12004.9562 18819.4668 7449.3244 217207.7594 14095.9145 105355.3442 15367.7136 8124.0866 8124.0866 9578.8932 20532.9108 16256.8118 12953.4795 42966.8652 16742.1997 13423.7497 20244.4967 16247.1436 8090.1445 32694.8896 24976.1755 20682.9894 8956.6443 10686.2299 14227.2385 6836.823 13388.5398 193087034 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 25075.8592 9449.2235 7983.7841 8822.3689 8215.0922 5836.1229 7626.1933 8949.7265 8985.8099 5333.6631 152379.1781 12231.3126 8691.3611 10861.0274 4924.3314 4924.3314 11472.6467 14084.7485 9868.8214 13992.3813 12965.7279 12109.1092 5192.1102 5827.8506 14265.4127 5710.4134 21835.8392 11245.7605 15221.0414 5749.396 7892.954 6846.4576 6035.3853 12470.5087 37521417 Sir Sulfur sulfite reduction NA Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7865.6475 5879.4721 48083.3981 3231.5288 11500.754 5665.4404 7638.6658 4142.0684 70644.2218 4440.3744 5864.1982 5521.4603 5521.4603 8167.6233 5196.5859 4826.6029 5626.502 2852.1428 18326.0098 7708.2512 6338.5629 25537.6496 8374.9794 9679.2168 2875.1633 3414.0981 11284.0838 2660.4619 6083.5653 315639651 apu Carbon Cycling Carbon degradation Starch Enterococcus italicus DSM 15952 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus italicus; 5296.4722 4322.0498 3076.6314 3863.9906 4106.0909 116323.7462 5183.981 4584.8721 2217.7768 2217.7768 4947.0893 9664.2538 7553.0834 6466.2973 8540.2417 7784.2213 3581.6846 3486.2109 8320.598 4336.4598 12843.7368 8713.3851 10066.9731 3524.36 4840.3835 4236.3414 3172.3727 10710.8716 145205126 SoxA Sulfur Sulfur Oxidation NA Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 5817.9949 7093.6232 2537.334 7463.9839 3477.7769 28113.2871 10211.2436 10211.2436 6735.0231 5582.9719 4972.7942 4321.4049 4850.1265 5101.456 2730.4477 3348.4091 365858548 pcpe Organic Remediation Herbicides related compound NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 20066.8166 28858.227 17010.7003 11252.2031 12661.6472 11938.3466 105780.3711 17826.5965 24291.7416 18119.2394 394623.307 18930.6397 20874.5766 22752.8175 12991.0348 12991.0348 12706.8513 29370.4246 18905.7443 17343.4601 33462.9071 21245.8233 12348.109 11847.5325 23260.6981 9635.4848 39235.0127 28782.1888 25290.9537 8446.3727 15823.3813 17804.1539 14656.7465 43552.5522 359756008 amyA Carbon Cycling Carbon degradation Starch Aggregatibacter actinomycetemcomitans RhAA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 5020.4805 4926.1404 255942725 phospholipase_B_fungi virulence degradation NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 13535.6642 9214.0197 8295.7716 4984.1019 4424.0671 8737.1564 5319.8366 9506.8272 28452.6841 7250.8708 219601.7425 5294.984 7465.6351 5501.3611 4957.0378 4957.0378 6829.9339 14480.5325 21978.6283 6100.32 6256.6609 3858.5924 2618.6321 8641.7504 17094.5824 5788.6585 42601.3139 15296.3709 16640.952 40847.7745 6199.6845 18647.6668 3436.2636 5574.4322 254449498 FBPase Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 9989.2086 6212.4267 6511.0176 4479.4026 2941.362 2982.0196 4380.6505 4702.2915 7636.1723 5094.3887 5094.3887 7488.7475 8473.6253 4919.4586 5762.0651 6993.7569 6836.8537 2594.4002 9329.3786 8591.8673 33456.9733 3946.9411 5402.5633 2273.8424 220062013 one_ring_23diox Organic Remediation Aromatics Other aromatics Delftia sp. JDC-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 8143.0861 6757.7512 29820.2584 42041.1647 6829.4231 7310.0369 8702.1688 10393.529 100770.0779 8631.1377 7129.2101 10945.0533 5543.9023 5543.9023 3740.8743 14493.2399 7321.6277 5875.3269 4551.6232 5132.214 17869.7122 5877.5603 17471.5306 72803.4355 10576.5908 4798.6238 13873.2904 16708.7376 4048.5438 7651.8911 171911021 Sir Sulfur sulfite reduction NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 27923.3446 6766.1304 14416.3782 55581.1414 71233.5343 11617.6494 6603.2721 14222.2631 22452.3335 51548.8989 377983.9235 22026.0756 12773.356 52199.9885 11937.0044 11937.0044 10273.1807 30106.954 19979.6107 64995.1819 23589.704 158975.7404 11366.3591 11354.4588 21700.2466 18635.5408 45852.3384 20450.9292 29225.1634 12195.5894 22175.2824 15624.4129 9001.49 23524.6704 156937471 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Ignicoccus hospitalis KIN4/I superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 46861.1198 662109.6782 281708.8647 19840.5416 801628.0632 15209.3372 28553.0256 62148.694 19939.8344 23424.6961 34022.2933 27171.1814 538284.3039 54939.8232 35809.2178 47725.8488 29777.7042 29777.7042 36269.0833 56945.7245 27998.6993 65028.8032 47666.9774 34552.5288 24310.6042 23803.6263 41565.309 34803.7678 67255.0895 39832.529 47657.3862 15809.2442 24896.9852 33254.6412 20535.4284 31819.9959 403659883 pcpb Organic Remediation Herbicides related compound NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 11840.1182 4868.3502 15559.8185 2864.3712 2538.4819 5288.1296 6876.1939 3534.1669 104812.5124 6798.4993 6578.8551 47194.7136 3060.4447 3060.4447 5271.6501 8407.9822 5329.9571 8567.3555 26683.5547 6694.0303 4324.1502 4001.2921 7517.1467 266070.0328 13335.7448 7924.7479 3995.6277 5864.1128 6718.6757 131490.2663 10690.9347 326412470 pcpe Organic Remediation Herbicides related compound NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 8749.6097 9753.2896 12805.5934 3396.1827 5042.1289 13142.731 6690.7295 7661.1081 124796.8058 18470.2623 6476.1719 7942.0626 7942.0626 6280.2361 36639.7134 6728.9234 5767.6337 5136.4633 2990.7678 7100.6981 9646.3342 2969.6842 31369.7453 6951.9338 12728.9817 7669.2856 6440.127 8324.2709 209520879 ppx Phosphorus Polyphosphate degradation NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 91000.7528 9168.4914 567248.8347 46024.2413 4617.5423 15624.4466 17156.8181 32193.3085 30532.7268 35000.432 19956.9017 389550.074 21892.723 68621.775 15567.8309 87730.2458 87730.2458 28697.308 49691.7662 19846.222 80735.9339 114508.5162 14695.6864 15775.0294 26150.8923 25739.0909 38787.819 60503.4987 54022.8803 32047.0643 12598.9068 26867.0143 30142.5687 35973.0717 27641.0157 323358715 chitinase Carbon Cycling Carbon degradation Chitin Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 126550.3315 42286.4287 8268.2699 13895.1846 6411.393 9034.6598 29888.2531 8579.5428 9828.3954 49053.0663 15771.039 393312.7091 21797.2419 21151.8461 16084.8168 25644.2076 25644.2076 14830.3809 29047.345 26442.686 12086.0875 15803.3591 19983.5036 8929.6029 15119.1477 19443.9157 70435.6383 178093.8351 44486.9262 28401.4022 15418.8083 13680.7776 28509.9718 6937.4206 29020.6507 330906871 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 10732.9133 11426.8694 34125.2471 14926.5528 11971.7666 9472.4262 8253.8928 3940.7114 10233.4783 8943.9742 5458.7354 215408.5779 14036.787 13749.2883 13846.5261 8667.9092 8667.9092 6805.6338 19801.7187 10713.9164 12308.365 12363.7275 14945.3712 4548.4803 6538.3686 17214.2606 5947.7444 20640.2659 8599.4896 17261.4423 6334.6232 7943.5367 9246.5079 5468.8229 13802.7204 32815765 mer Metal Homeostasis Mercury Detoxification Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 21249.7784 25695.049 18342.105 15812.6566 7364.2516 18223.1221 43185.79 10699.0396 21823.1726 24702.3452 11830.8415 642279.2334 25943.0967 22115.9243 24263.5936 17958.0194 17958.0194 12121.9776 30149.4863 26174.8611 22802.163 28448.9303 31695.8277 8782.1131 10137.5911 26181.0975 14255.0021 43327.5724 21382.4769 26823.6103 20447.3052 13743.918 11978.1716 12881.7966 27266.8967 37924788 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 45714.3047 22262.3507 12093.199 9200.7722 9419.5852 8517.6997 58375.6099 28308.4295 13186.2672 21401.4807 13111.8642 577884.2968 53486.2769 22198.1485 31963.7553 43127.6497 43127.6497 29933.4114 30477.6203 18348.4951 21159.3609 28532.1105 27147.7886 106138.1251 70278.9477 16052.0271 40027.0252 114812.1958 57580.0547 45547.9886 11550.3127 35405.4549 24082.3415 12266.3778 125419.2087 119899278 chrr Metal Homeostasis Chromium Detoxification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 34414.9593 14690.6076 51187.7413 32210.5927 19418.051 9329.6909 27136.0085 28319.2781 24034.3476 27921.4841 31785.9511 17787.1171 785218.0233 34878.5056 38989.8731 27776.2553 16124.656 16124.656 25129.7729 55467.2388 30407.8511 31722.0746 72047.087 40231.7004 17272.7534 18152.5074 52800.5427 17240.8753 89848.271 19507.5593 33120.6111 19342.8094 19101.463 22285.2956 20539.642 47411.1869 221532903 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4582.5498 7000.9773 3683.0782 4121.1189 6436.2763 8516.5107 3776.3144 2643.6137 16977.2322 3617.3925 6047.3964 2679.8187 311105710 xylg Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 32656.3996 12955.8766 4813.7918 7408.3571 3636.0738 8073.8089 15803.5905 17831.2043 104594.5558 6027.8098 10258.2865 18816.379 7978.1166 7978.1166 4596.0947 21662.5517 6950.5957 24426.2899 11025.2904 8882.2574 5620.3133 8384.5465 12549.7966 6299.5504 14779.4867 11385.6676 12907.8456 7860.4024 8840.4183 9672.9506 5305.386 9668.3983 119485538 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 51431.3446 1891443.8656 7079.8827 1587674.6149 70093.342 29231.9676 18162.0442 295300.1865 12177.7322 7662.0003 4104.9215 22145.705 22145.705 172131.8819 347349.0555 12951.2217 8077.575 11547.967 5297.3506 9137.304 27266.478 12907.6543 70225.597 92732.8074 41450.3152 45825.1273 42393.2877 105108.839 49166.088 4660.8714 347527138 mer Metal Homeostasis Mercury Detoxification Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 10551.8691 9492.9545 5884.0176 9783.5631 9998.7547 5391.4314 7976.4439 15802.8525 14127.006 12328.3169 19373.414 248224.1218 11895.327 19915.9141 25564.2248 10670.8099 10670.8099 25510.1475 20152.573 11850.0759 23765.742 10072.0226 10324.2001 6107.8219 13246.6556 20710.8213 5529.9258 255132.1025 13034.0332 23704.4452 7255.2732 47708.7022 19383.0634 16219.6426 24926.5902 302677430 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 63201.5164 17129.3055 19165.5407 38289.2528 17496.97 21486.5992 23489.6668 9048.7073 27496.5063 34431.8366 15623.2532 726520.1449 29718.0727 37434.7953 22511.0408 19428.1351 19428.1351 15489.3731 38971.7219 29032.995 21183.8926 29553.1992 26533.9447 12577.6157 14603.983 37730.0636 9901.6152 54670.4438 33928.2398 36408.6844 20664.1755 19496.5525 16137.1025 11739.4036 52162.4511 296536447 ppx Phosphorus Polyphosphate degradation NA Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 32657.6601 23542.0422 45670.9983 24730.9589 11092.2982 43144.2943 9789.8474 16705.022 19715.8092 16821.9067 584151.7748 17559.3901 24692.176 68634.9741 26176.8784 26176.8784 33375.7367 35080.2152 17846.6492 10319.7962 18988.5138 10390.3948 10059.7665 28368.8773 26760.5321 11442.2052 35188.6835 15223.1149 36966.4702 7126.496 18309.7181 24133.1909 6942.2108 21676.8799 91787356 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 160433.3308 27953.1618 201761.841 16108.1048 19725.8618 12747.7108 11684.4249 10322.5848 88793.3947 107799.5172 18605.7086 560001.6534 13839.068 18450.6003 13933.1812 29934.659 29934.659 9308.7093 26969.9944 11509.1307 33816.5895 35132.2438 20967.698 9196.7321 23652.4255 19395.58 32527.0137 59253.0171 12147.2197 48707.2691 12409.0624 17454.9916 16379.5572 10823.1112 17995.7628 392722233 one_ring_12diox Organic Remediation Aromatics Other aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 34077.5735 6090.7498 17264.6099 16705.4212 5033.2117 62630.0058 4711.7682 10984.761 8972.5997 11196.8234 388056.4345 16308.4076 23208.9458 21904.203 12027.8477 12027.8477 13977.9237 38458.1539 18327.5494 32726.847 28596.1118 19304.4988 14177.7811 13736.654 20283.7514 9818.0034 50457.6857 10453.032 32942.7028 8620.8274 15468.5184 21135.0975 9453.7299 33827.9024 342316542 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 66824.4516 47229.828 6479.9069 63135.2911 6201.4287 16373.6588 12879.9566 18075.172 14991.4417 38639.0475 16280.4707 747700.0124 12674.4756 8044.025 37129.6538 14066.9506 14066.9506 13261.153 42857.6509 12016.7179 14460.9052 38017.1997 15619.9842 12464.98 49601.2104 23810.2745 16504.8777 53429.2896 31882.4687 18335.6465 10833.374 60170.2581 19556.1284 49295.1702 56965.6194 291454332 urec Nitrogen Ammonification NA Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 82854.8514 65355.7886 34011.0036 159237.2792 85518.7298 33570.4447 31749.5748 69468.6823 25834.5233 41323.3098 293101.2253 47764.5984 568228.71 98177.9212 56950.9558 81751.947 57919.0858 57919.0858 38050.7228 113770.4423 47159.42 42565.6086 130465.6313 46393.0124 26351.4071 33516.6917 206415.9753 68093.218 131176.1909 76264.0085 141275.979 31059.5366 45364.5041 45788.8354 30506.6284 94928.6675 302550937 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 17779.1092 6442.6987 9385.0387 2710.2997 4365.2242 4470.8421 8129.5075 209523.9325 16758.7966 9558.4917 109605.8189 24344.2749 24344.2749 9157.6786 14459.8361 6512.2193 4757.8514 7620.0985 10319.0847 116056.5376 14102.8608 15906.5736 4416.389 8559.8307 6748.0003 4066.2769 10190.4269 40253036 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 27460.526 7617.3021 16731.0177 143887.6685 55949.8847 5126.5827 21662.9084 5364.8213 20881.7877 40225.8663 17841.0032 621877.4515 28971.2583 33135.8425 53420.8225 81410.9442 81410.9442 47309.0078 36672.5602 33954.3471 14244.9685 12991.7287 9963.901 8153.3699 26546.5156 39354.8647 10816.9667 45273.235 35641.1342 90279.5424 9340.8029 23674.9066 42942.8666 6130.5338 24672.8253 312221407 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 7601.243 5080.4282 21148.1385 9767.8715 3278.9951 2868.8169 4207.1702 3831.2371 19257.6881 79913.7909 8875.2385 4277.1969 3213.179 3213.179 5191.3544 9459.2654 4692.813 5595.9698 3718.6021 2599.3576 7237.2572 7530.4382 2849.9837 17164.0055 4306.0596 7644.3498 3555.4976 5135.2328 5160.0115 8030.0823 5638.5075 172072470 amyA Carbon Cycling Carbon degradation Starch Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 17614.7685 9294.4447 12978.4874 3492.477 7955.6799 13734.3955 5160.1593 6817.1274 9020.3166 679073.8843 8949.4326 13158.6709 5732.3967 11925.9165 11925.9165 68680.3241 22933.6235 26332.9572 15843.6906 20190.8372 10903.0096 5571.9309 7155.8887 16681.0298 15523.571 28685.0463 17652.3631 18195.1805 7534.1949 9788.5491 9433.9618 10080.072 8309.4588 118016698 phn Organic Remediation Herbicides related compound NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9638.9266 6087.4318 82410.8569 20928.1976 4931.1466 8586.0319 5909.9352 5704.6446 7343.1799 100406.9425 10810.619 8419.0147 11228.4477 11228.4477 15355.8145 7142.6142 13682.4573 8856.9182 9756.3995 5831.3108 5159.8749 7504.0194 8002.6638 13823.8872 12120.8632 14025.791 5728.6679 19172.1221 4083.9856 4920.6887 8895.2813 302418644 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 9110.0074 144507.3882 18257.9325 10571.1981 24728.6204 19896.4584 2704.6302 4481.8002 7690.4517 11226.1436 20224.0732 5145.521 13397.1645 17203.9548 17203.9548 4043.8991 15577.3506 5959.9694 5590.4255 11620.8053 11329.9812 9476.4961 7306.4456 34883.8024 16105.2175 19181.0343 6851.0239 14292.3062 7478.4537 8037.2046 20501.4 12533.1573 16893.3036 90265665 phenol_oxidase Carbon Cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 15682.5095 51651.0464 79595.8732 7509.2538 15443.9772 30416.1528 17003.7003 14219.3587 24055.012 39307.6493 1848067.9985 39936.2282 11661.8832 10737.3015 20803.2389 20803.2389 10665.0108 42946.0617 22519.2731 10281.1677 51690.6043 22808.0251 17553.3374 14116.313 15665.2811 30574.875 137002.2737 39461.4859 37447.4979 16276.8434 54299.7419 14957.2066 14626.4165 53507.7926 358449557 dehh109 Organic Remediation Chlorinated solvents NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 29232.3595 9807.5566 17039.3164 17272.2287 6082.5385 13414.2701 15068.2502 9494.5387 18747.4026 23699.3551 21858.6781 448090.2451 35920.4597 27268.3125 12701.9324 12771.8883 12771.8883 25678.8892 32348.0202 29201.2647 29125.7575 31618.5996 41750.7837 11939.7895 11052.7329 25236.4569 11632.2 52136.3019 34829.3377 29824.4703 12746.1035 16496.9796 17746.4709 14258.5885 40536.8589 256832748 cda Carbon Cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 21979.4801 106513.8612 21206.6418 4207.8141 3415.3514 14152.6691 4724.8387 3521.8384 163054.0369 5865.7559 3947.2995 3947.2995 11398.9834 4726.5161 15408.5758 8185.7232 15530.5583 43801.8693 7462.5826 7233.8274 3463.7183 21454.769 10309.2288 5165.5596 12809.8384 218762225 mer Metal Homeostasis Mercury Detoxification Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 7732.5045 5360.9806 8226.721 7350.9713 6677.532 9440.4807 13092.0413 7170.3817 171274.002 10375.5241 12532.9063 6087.8794 5423.2332 5423.2332 7938.1735 16978.0448 10008.709 32281.0952 28904.5925 16167.1767 5312.5891 8854.1847 10016.7169 6105.4697 23480.1571 5474.352 16212.559 5891.9339 8128.1802 19133.319 5297.2396 11615.2061 342316522 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4990.8999 5619.8633 96836.601 7760.8856 9266.2794 2754.0725 3732.6414 6251.8159 3308.2614 3308.2614 5673.3972 3836.6312 5265.0167 2054.3628 15031.8463 27722.1238 6527.1227 4797.8559 3614.7791 8094.0858 3416.6402 355336811 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 8260.0491 10134.3513 8707.6914 9507.2643 32284.5868 4889.9694 15560.8908 3282.8606 6230.3132 6339.6066 4742.6596 134645.2178 7944.315 5448.1866 3106.6135 3106.6135 4059.6501 18566.8953 11175.9547 6739.7823 10750.6441 10198.7038 4454.2403 4655.8107 18131.3089 5427.5573 16489.4411 12211.0525 15178.4809 6809.8685 8742.1418 4941.6137 4982.1807 11720.8569 189008016 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 14327.644 9481.5483 13636.2367 8841.4822 11701.1817 14855.0854 42624.1583 14765.5867 168114.1643 13919.8126 23645.2248 87705.9506 12963.8298 12963.8298 12250.1533 22993.8104 24974.4403 8650.5721 16293.7707 12686.6332 7139.5712 19521.9415 16989.4969 17174.0538 12094.3631 7100.3333 21295.0878 6970.0948 15100.4453 51693.4182 5559.057 14442.3311 108743469 urec Nitrogen Ammonification NA Streptomyces kanamyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 474265.6743 34531.7418 72678.7749 197661.2528 18955.2339 12635.6877 50968.2511 69122.0211 62108.7906 197624.2787 142343.4863 120857.8068 973646.5285 79344.0879 67692.3036 127236.2225 98993.4796 98993.4796 63707.4878 129447.7342 153764.9433 205943.2891 261745.9839 66198.7471 76275.5115 95603.4999 84244.1475 112363.3944 187493.2906 184071.061 138444.1407 69373.089 78257.0861 148931.3566 46540.5962 115780.2951 383778953 ppx Phosphorus Polyphosphate degradation NA Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 19901.2091 11443.2058 18024.077 3346.8198 26100.5623 3451.1208 22444.8453 29093.5426 11054.2662 80527.4459 5050.2544 14619.5032 21191.6433 16389.944 16389.944 12609.7035 28575.4329 7213.5443 15553.6638 23167.1767 9204.1514 5008.9574 12476.4275 74291.6897 26139.6207 33031.7353 38373.3621 32412.7081 4008.1687 21676.1784 14537.1205 8140.6707 38587.2138 379988859 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 120410.2116 11589.7733 74224.6086 86344.2689 301098.7788 18821.9987 78922.3774 50982.0814 73928.959 51608.4011 56471.6787 44787.5629 2799146.824 134175.5027 74437.3137 86655.623 86826.605 86826.605 49336.6413 105523.2318 50202.5081 47021.2712 66603.2101 277383.0442 86065.1948 50403.6028 92343.4874 68127.371 402368.2285 124355.456 74091.8398 30914.9353 44675.7883 102676.455 38283.6848 143922.4138 363714233 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 9573.2011 3524.642 3967.9231 3873.4442 3873.4442 6523.3894 2440.9501 9823.2364 4647.5234 6813.9232 121607195 tktA Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 26087.2567 8748.2893 13884.1605 7083.1109 148682.4294 5818.2852 7680.5563 11140.9913 39499.6127 137643.7235 29529.5156 11878.8379 14698.5419 22991.064 22991.064 13364.8452 88629.0737 60190.2335 43986.1355 14706.068 15564.6199 13106.0968 15441.9909 39452.7297 12943.6967 36641.2198 16417.2495 40417.3755 7587.8519 31658.9889 75392.3552 12258.9626 13354.9374 329849042 mannanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 55358.8736 30945.8305 4359.4971 18380.963 10720.5332 3279.8192 6182.9419 18875.2179 4556.005 124589.358 6248.6489 8634.0591 10861.0295 12534.7457 12534.7457 3500.0947 18412.823 4552.8075 16947.0624 18159.321 25490.6942 10299.7713 3348.2295 7383.6455 6540.8926 23249.4498 5901.6982 8084.6349 4627.548 5103.4974 10936.9714 3531.1206 23034.5378 296825494 cellobiase Carbon Cycling Carbon degradation Cellulose Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4869.9136 14484.1628 3105.3719 16961.0487 7602.4859 7491.8409 10744.16 59761.395 12809.8832 9263.3943 8058.2933 5607.4963 5607.4963 4142.7212 18559.0921 5665.3709 6118.2234 6184.3093 13376.3886 6373.3843 32772.5229 3352.2595 35225.557 15441.4844 24936.3205 6318.2889 8546.341 4669.7998 9301.3553 338530591 urec Nitrogen Ammonification NA Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 25852.0329 25761.5502 131372.2402 40302.5847 16362.3142 18238.9671 360744.5907 7748.6467 29690.0034 23633.1257 18804.2214 6822587.1302 19074.3841 25290.9767 36359.5985 30537.6644 30537.6644 9786.1978 30575.104 30397.336 19049.9647 38960.7131 21975.7788 30084.899 30368.7127 69205.9243 239203.6836 34343.164 90885.7438 29140.7973 25267.0172 23219.0126 20311.5231 411765.7 100446.0448 219860730 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 23479.4039 7711.5579 234498.9725 10649.7419 2690.9235 3632.5096 37306.6914 8533.9462 10521.6509 3201.0593 134079.9046 7796.9243 8367.4722 6289.587 11394.474 11394.474 5011.2493 17368.0347 7196.8038 21993.5524 18468.5133 19388.2524 11341.7926 5348.625 10956.59 6014.5531 23521.7905 4940.1566 10325.2591 4482.6182 9737.0595 12682.1696 5219.3981 16815.7174 327481346 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri DSM 4166 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 12473.8235 84588.2615 76331.0725 13407.811 4819.1173 19501.2571 24481.7297 17061.6004 79426.2355 46579.0025 21976.3955 252130.1553 16474.499 23587.0637 41816.5411 33091.9152 33091.9152 10175.5144 71737.2513 14268.3436 15208.3709 48266.0531 150620.3685 25079.7622 25210.8639 18001.5635 12667.4331 45894.871 35567.8009 24832.2718 9785.2441 16342.6981 63335.2686 12706.7236 16190.7355 170934871 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 23585.3419 72439.4018 39858.0948 162266.2579 44157.7178 26158.7537 30224.0201 16548.0546 51336.1093 28284.6021 39925.9786 3464127.5641 43443.1425 76027.9014 123401.3223 38281.3084 38281.3084 145240.0511 44709.4795 387378.8087 24254.9912 73029.8371 25228.5899 35726.9776 41110.3524 44167.6261 49340.2682 156311.0955 62273.2302 66446.1823 30444.2578 313971.8091 34804.8699 13193.3074 44501.351 54016528 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 79047.0484 365910.5424 36442.964 37315.7319 1012491.383 41154.8003 24573.7815 61438.3998 23255.1748 83117.3506 32988.229 88525.4552 1018483.3896 37616.3647 61534.6138 224392.5945 57812.5684 57812.5684 27419.4264 74717.834 27409.727 48348.0028 80913.3191 56580.7588 33654.8092 91812.8321 45777.2039 26381.6936 129134.4961 68987.6384 56751.9784 30394.985 81667.2313 46124.6684 43114.8829 59829.4986 226953200 pcag Organic Remediation Aromatics Other aromatics Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4709.4922 3643.2742 4638.5906 2643.8948 73976.9907 8341.912 3688.3169 3668.4003 8554.5023 5503.132 4940.1828 12133.2313 3436.6528 3800.9945 3012.287 12806.5043 5997.0307 7429.0266 3285.0469 2932.8374 3148.5812 3780.8961 6600.1736 291544169 xyla Carbon Cycling Carbon degradation Hemicellulose Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 5127.1059 1608026.3266 12978.3466 67643.519 2959.5006 3876.9599 9561.1275 5570.2715 4036.9526 66123.3274 10320.155 7504.9939 3225.3588 3225.3588 21707.2134 59391.9467 7763.0701 5041.0239 17211.1991 4729.3663 7825.5377 6526.9684 10192.0815 6233.836 17788.4422 6924.0737 13667.3096 5357.3222 5293.3783 12234.637 5946.5434 9758.5732 323274777 ara Carbon Cycling Carbon degradation Hemicellulose Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 89152.5683 6454.9409 6803.0464 6209.9694 10210.3886 15844.7754 15922.2773 8034.0122 12847.7646 12100.8218 158382.4386 4392.062 10908.1574 7529.8 9205.9562 9205.9562 4833.2416 45195.2286 11826.9553 8058.2857 21658.9497 6930.3404 16726.0332 10719.1 17339.005 7452.9022 15833.5734 28722.7078 11434.8808 10731.4965 11352.6357 32272.2612 9778.4014 24462.2835 116608920 urec Nitrogen Ammonification NA Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 70265.5272 393876.3183 17614.529 32824.5782 6872.9847 5140.2063 10793.2202 33791.3613 67070.4907 22011.8481 46896.1894 416789.6224 62806.5118 44191.6948 51878.0355 48598.5505 48598.5505 32042.1869 50170.0951 42621.8141 58605.8695 63572.2102 24989.7215 37757.2069 26025.5101 21181.9954 25738.2969 61013.9836 98722.5722 55568.396 12244.7445 49437.327 41096.2236 17678.0595 22281.0973 86571793 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 350542.7933 56437.5694 37212.6244 58719.32 135821.1477 73820.1704 276488.7562 92080.896 98775.8419 104846.9801 163871.291 1580407.4551 185757.145 75969.1313 153767.1126 99864.2275 99864.2275 55978.7293 212252.2957 60121.7077 112692.2882 630550.7969 317813.8203 239207.0243 96623.6871 137817.7443 115287.6635 362664.7894 171894.0907 113831.3548 86113.1363 90975.3832 91415.3909 74430.9367 135452.9633 71919825 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 42320.4426 12236.4895 9172.9576 19483.9436 4942.9197 20839.6946 28582.0621 22866.1219 13409.5046 15516.8909 26332.3354 33539.8034 40494.5796 33735.4235 42904.1231 22842.8756 22842.8756 12680.8202 44597.5909 21003.8651 27573.8979 42605.7046 36823.7109 18646.7186 67614.8426 23763.3114 16803.7947 87939.851 28294.8649 38399.3069 52436.6026 24310.6667 29175.1278 17330.8338 58857.4946 19171194 phenol_oxidase Carbon Cycling Carbon degradation Lignin Gaeumannomyces graminis var. tritici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 15834.841 2657.6863 6249.8263 5455.6912 2842.342 2463.8651 9966.2214 6493.391 4709.1514 78484155 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AJ9463 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3895.907 6033.0277 8374.1473 2208.4338 3349.3348 5766.0143 3277.4876 64737.3833 4626.187 3660.0533 3660.0533 4080.5188 12468.3 4907.8139 4476.5926 7165.5022 8379.1782 2358.4924 2894.1338 6208.1866 4591.1831 810700.3193 2865.499 4409.9352 4990.34 5164.0113 384565169 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 6652.5123 5776.41 2268.8094 4880.6999 5409.7914 3495.9242 2540.2339 2540.2339 10469.4997 3631.092 3013.2045 12506.5452 8034.7648 3436.602 4875.8033 4513.4962 68053497 arsc Metal Homeostasis Arsenic Detoxification Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4250.5178 13403.3143 2639.5147 21277.0578 16884.5051 2436.5819 77683.8089 4122.8106 4040.1933 4040.1933 17567.9263 6542.8586 613534.3331 4832.6869 4850.9198 2441.5288 3285.7977 8612.8441 2375.5328 6187.8734 8189.778 3563.9187 3461.0486 3791.9705 6351.2409 7689.6464 126635945 alkb Organic Remediation Other Hydrocarbons NA Nocardia sp. SoB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 11641.2717 6432.4368 15009.4908 15121.3052 26921.3808 8677.0413 9269.6047 2919.7188 6129.0483 12576.2796 6383.2053 123295.1698 7998.4044 8252.3751 7763.4286 7962.4371 7962.4371 8075.3252 23398.711 11667.2882 50436.2621 12678.0332 127433.0853 10407.4504 6993.2114 41008.131 14107.5314 32888.9872 13757.2554 18968.6358 6373.5316 9748.8778 15782.9697 9314.1833 39819.3816 386924139 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 6467.5502 7860.3916 5818.1771 2655.0056 3721.8277 10924.6191 2826.3532 2826.3532 3047.5812 6907.7186 4643.5325 5056.3727 2929.2932 2673.386 5303.5838 2813.1576 12059.8891 4352.9033 6770.713 2463.3144 3097.349 7820.7981 3700.9132 48290 amyA Carbon Cycling Carbon degradation Starch Thermoactinomyces vulgaris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 7448.3601 12915.3385 8565.8208 7362.0798 10129.7199 8761.1111 8671.6382 3283.8863 7122.4758 9012.6083 10611.4739 154829.2807 10012.002 13906.252 18195.1958 6589.4626 6589.4626 3968.1277 24541.0036 7097.6926 8950.9425 7420.115 3945.6394 4813.5917 7536.4835 11547.5808 6601.1932 21767.741 6118.3543 9887.9479 14250.983 9086.172 6480.2895 6907.9338 10045.5978 399160626 alkk Organic Remediation Others NA Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7955.3806 2652.2027 3138.8134 3129.7699 4694.8143 2291.5373 77150.3414 3474.2439 4585.6846 4389.4743 42437.3731 42437.3731 3446.2041 7759.2109 5119.0687 7630.1817 4950.2876 2855.0028 2657.7252 8383.6493 2629.414 9638.1402 3702.3349 6658.5177 2167.8964 3928.2263 3500.9527 3120.1994 26531.1121 225387560 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7475.5671 5252.5768 8708.9587 2493.8203 66853.6645 8907.2611 2911.224 2911.224 12638.5109 4907.0856 6549.7966 16258.7227 6879.4363 5397.9208 4355.1767 2425.4907 119483664 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 25773.7613 6493.0197 119028.543 7658.3775 5327.173 7596.5058 13887.2947 77099.3987 87157.4478 8167.9737 34106.3774 10423.1103 9087.8184 9087.8184 4083.6518 10425.9907 6918.2754 36292.492 20806.24295 4515.2826 4398.3063 18683.571 22361.9313 5634.9852 18895.1627 15867.3417 6380.0312 24889.1821 12534.1713 16453.284 11683.7481 146280016 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 476758.1022 223597.7894 163511.4367 385458.6327 184894.6559 1101204.5457 312500.0373 393541.9927 277945.6205 315188.4453 314111.9146 262437.775 3574866.6189 438529.9636 549851.5899 438729.7262 475592.7404 475592.7404 227822.0492 498852.7734 181376.1846 241710.3648 556840.5405 551668.1689 201707.7019 193296.4561 596209.4765 280312.9548 584962.7525 243822.8669 479754.9619 205893.7868 241038.1542 361111.8102 177357.0904 758616.3549 320333221 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 33066.9172 8840.7011 20252.8505 4212.2211 10182.2409 4430.7188 8956.2095 12282.3719 12336.3089 162125.3892 6557.175 10017.4549 14568.1517 6273.8792 6273.8792 3496.9322 16063.788 26827.5 14605.4304 7694.9142 8734.3687 8266.2477 6699.1234 9822.3495 6245.3628 22394.298 13610.3616 15379.5183 5409.2034 14145.6708 9445.4582 5420.8863 14779.0408 169846011 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4210.9252 6536.0224 2688.971 9930.8259 6361.8914 6577.986 5807.608 6647.8521 1986.1477 1986.1477 7471.0528 3795.7398 11016.2709 2629.7112 3298.4462 2512.1209 12508.0659 5887.4727 2219.8601 3292.5578 5960.1104 6174.2591 210613789 amyA Carbon Cycling Carbon degradation Starch Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 22434.4 11813.0156 12889.161 12449.5736 7671.7911 7328.7948 16865.3914 64283.6943 10128.5691 6107.952 6081.3897 116572.9361 12856.0557 14521.9684 16123.5626 6323.2039 6323.2039 5290.2131 11125.6661 6044.2838 10772.2825 36300.6955 7546.5824 6619.6177 7858.3009 13008.4975 8870.9963 20700.1615 9562.6657 18547.6853 5274.1881 9122.9218 9566.9481 4949.2152 16760.787 33243251 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 290958.1507 18180.2957 77648.5051 130694.3585 335963.3534 82236.8853 89046.3568 84261.5951 215995.6786 67811.6906 127847.8219 60110.0861 2991986.0389 170162.2017 70239.6651 57811.2639 63336.7082 63336.7082 36499.7334 154651.7863 114378.5441 109404.6355 78252.6918 262995.2485 131310.3874 95524.6801 278094.1337 83483.7048 768357.3943 105176.2964 75926.2469 95849.2139 93487.3615 82313.7277 59507.8716 113693.4867 99083183 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5224.5154 10969.7481 3990.3716 9433.0208 5440.6406 4380.1302 12917.5455 11314.1615 129078.0981 6492.0468 16843.7067 6965.8501 7448.9627 7448.9627 10313.4465 13333.5762 7824.4075 10965.8912 12110.894 9279.6757 5636.4809 4716.1374 8869.4291 5566.8531 14929.1861 20400.6626 10313.0206 4127.6228 4508.6446 9939.5485 5456.2342 8449.6951 383830329 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 63795.8021 27555.9185 70168.939 43149.4559 23125.1936 19455.0579 126592.9181 36627.9949 28551.9396 36665.384 45942.1151 28294.1135 617644.0811 50020.7278 49347.0618 42440.4469 53152.4249 53152.4249 24916.4924 35828.2751 28707.6964 38136.6866 60129.2793 33806.9441 15398.3639 23839.9199 40295.3764 21827.3384 176943.4141 53076.3448 45560.7858 18207.2697 21625.4745 28297.9894 17262.9369 53739.8959 295895262 narg Nitrogen Denitrification NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 6653.3652 8793.7702 8269.0706 16954.3933 29124.6929 3668.9862 4251.0134 25046.1507 5049.7168 10821.5498 98014.2891 75679.3207 9756.4551 8641.468 6309.3212 23159.6443 23159.6443 5016.0441 11886.4813 6467.8849 7313.2939 5970.7304 9087.9733 3801.3907 6372.91 12167.3258 4295.5604 16107.11 9952.7667 12711.7587 5260.1818 7849.2198 5691.2723 4880.9319 7994.047 365857198 poba Organic Remediation Aromatics Aromatic carboxylic acid Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 7152.0945 3454.4776 3022.4828 3238.4641 7581.6054 82363.5533 6705.2269 9993.2125 2685.9908 2685.9908 8757.0147 4603.9284 8015.3053 6210.8849 3023.8346 3954.0957 13412.43 3796.2244 14665.4376 9064.6785 11046.2979 2932.7579 7559.067 4303.1203 3025.3949 16766.7329 291439842 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 13176.1724 994913.9411 4538.4895 5381.562 2672.7978 5241.6365 3095.5071 4869.3569 7352.0343 7478.8512 129345.1508 7162.972 8771.7829 6691.3214 5042.1029 5042.1029 5023.9971 22932.0707 4001.7943 3607.763 10252.105 6514.4547 9970.1262 6497.135 9197.1215 13971.1151 5307.9732 5131.8017 13190.8939 2902.0688 13666.8686 6645.5579 3281.4908 372471984 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 6123.0495 9347.1504 11189.2638 13278.3394 6741.1822 3324.8121 3927.7821 8068.6401 3677.5212 9019.5289 7865.0648 66155.9225 35982.2498 5694.5891 6296.8061 4269.676 4269.676 4532.7887 9215.4943 10663.2235 7017.1788 10066.0924 5919.8058 14129.8567 15714.238 16616.498 6106.8311 22614.0948 8425.4599 10545.1567 3131.405 7919.1755 12443.8216 2455.3453 8491.1019 170658341 chnb Organic Remediation Other Hydrocarbons NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 7718.0201 6945.2313 5055.0566 3785.1154 2763.1683 2582.2069 5341.7415 5811.4306 9274.4887 333408.8209 4976.8918 5525.1104 6170.1579 5107.0164 5107.0164 28956.4065 11810.9929 6388.3781 8062.2219 15531.7239 7253.5351 3897.93 3050.7526 7240.3091 9506.2624 23584.209 13286.2264 12050.2111 4765.3008 7250.763 6333.2439 9884.5557 6754.3732 242207727 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 20637.1153 8480.9514 14132.7229 18536.0892 13156.4773 13824.2093 11169.8816 24023.7038 12129.8743 392527.3648 332173.922 18949.5549 73675.732 14096.756 12719.1204 12719.1204 299330.169 26734.7043 17711.3578 439826.2712 31189.3444 20936.7553 8106.8606 9167.8496 19542.5338 119985.1031 54400.2392 18760.4885 20569.6729 8963.412 9841.3192 14277.8917 11005.9005 26613.4912 13471048 b_lactamase Virulence Antibiotic resistance Degradation Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8242.8317 20915.1135 5589.2735 4751.0589 4342.7141 7879.891 4120.1023 6720.3608 3557.904 83830.4262 6358.8623 7216.782 6616.0167 4966.9976 4966.9976 3990.0238 8617.1755 7105.134 10666.9817 5211.739 11258.7591 5643.7157 26028.4124 7647.2193 3599.1473 19374.8933 7211.265 16350.2209 3614.2163 5805.5869 6195.5627 4326.8279 12865.6761 212633527 chitinase Carbon Cycling Carbon degradation Chitin Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 65328.8549 98727.9366 10514.0121 46391.5335 12580.1248 16233.1823 31089.3959 316045.5178 32032.3111 42942.3447 37142.9652 616589.6121 30020.1567 49440.9472 36498.8977 46191.8103 46191.8103 26451.3082 52774.3164 35047.7309 44886.5244 38809.9779 20332.5204 194791.8785 57751.0184 26881.818 82857.7698 105378.3545 55190.4071 31271.8782 48278.3153 27677.7259 50620.0687 18116.865 40501.1183 62149162 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 80677.3718 6358.6068 12112.9556 18245.3548 8084.6086 14676.679 9209.9931 21270.7517 9886.5623 16816.7699 14779.5831 414573.4995 13298.7893 33704.2942 28078.6968 20730.0792 20730.0792 7075.8514 33549.3508 19057.3634 16015.3495 12029.1055 32921.1456 9264.0196 7485.7235 23665.8081 8732.3371 71978.2016 82844.1944 25582.7399 5931.6667 12845.015 12497.9751 8637.3791 16759.3042 338756403 TIM Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 304524.2848 15702.9684 40916.6002 12167.7706 8369.1864 11495.862 52639.4687 30253.6343 15225.4114 11988.8229 8611.8063 250717.9534 16782.9641 33700.6398 17188.5188 111590.8064 111590.8064 10119.6621 30882.8855 19958.5974 14737.6959 27807.7042 21482.3894 8501.8155 9511.4702 15106.2724 8134.1491 31605.5627 20724.037 17484.4177 9317.6393 11480.263 11756.8511 9185.4647 29638.6511 374607585 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 112662.3159 19460.2655 55013.6121 39091.6722 62406.3179 7821.7874 52771.149 59922.9205 63131.7757 67540.8219 526024.8734 207386.1537 700216.159 67519.829 175211.349 319659.6852 113727.6737 113727.6737 30227.8384 97027.3717 54064.014 208993.5987 185281.6441 65965.2247 76132.2521 88146.3177 114844.6026 75754.5014 231207.1676 82104.3934 67011.374 388634.6441 368706.1525 71773.8545 42236.6047 628093.2007 72121940 tktA Carbon Cycling Carbon fixation Calvin cycle Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6915.9177 6091.3488 7606.1199 16287.7946 6362.1984 4971.4293 3346.5823 6053.9872 7529.193 3649.1988 109569.4776 8626.6823 6341.6089 6233.9793 3120.8202 3120.8202 5194.7645 11471.9973 9951.5142 20063.4929 7540.9804 12688.0222 3411.3603 4446.7931 11824.2585 3687.1257 16888.5021 6202.3629 10604.0758 3134.1625 4991.056 8103.2443 3383.8554 11063.8127 50950572 amyA Carbon Cycling Carbon degradation Starch Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 7633.1182 5366.9285 7562.8426 3202.8162 7574.3254 11508.5412 10339.0806 8513.0861 7159.3924 7230.5853 7230.5853 11857.1583 5876.2589 4418.107 32200.8938 5471.9286 4841.2288 2561.4975 3438.1894 10213.1272 12259.353 8645.0806 3916.0938 5241.8557 6458.6939 3933.5661 357590694 cmci Organic Remediation Aromatics Other aromatics Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 4473.4631 3560.11 4884.6632 9384.7567 4520.92 3205.9346 4038.4305 5076.6944 12256.1234 5786.1331 5786.1331 4482.022 5059.5962 2339.0158 4290.9607 6885.3196 13437.4739 6136.6459 35803.782 2656.957 3957.1381 3422.1831 21096.8529 6318251 protease_serine_fungi Carbon Cycling Carbon degradation protein Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 8415.7856 7921.5509 7371.7857 7139.3336 6972.0051 6400.0437 3387.7405 5630.6493 4697.3246 27855.4759 189599.0334 10151.4887 6330.4741 44313.3299 3956.4481 3956.4481 4450.9593 10577.6314 9928.6082 7748.7833 8953.918 9055.2901 3247.1134 4116.8493 8023.0267 3398.5386 16566.4526 12474.1739 12587.0056 3999.495 5488.1106 5979.595 4236.2191 11320.2787 145220951 cysJ Sulfur Reduction NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 45830.2201 39124.2823 40224.2894 65522.4445 24934.048 95692.8543 33485.8067 53588.1439 58692.5101 46737.6231 78118.9498 1086181.0251 48813.821 38795.107 56590.6301 39751.1311 39751.1311 17653.5314 51299.3855 33659.294 28930.2087 337941.3214 40377.2384 26286.8027 34727.2814 129571.5254 33744.9312 95332.8297 32652.0809 67307.4419 20443.0095 34960.631 36302.3316 65526.079 47239.0956 326413838 chrr Metal Homeostasis Chromium Detoxification Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 8954.2335 7597.7138 12239.8567 12171.0357 4809.3496 2745.3776 45870.4993 70220.068 4304.6765 10452.8777 10452.8777 3212.0292 21004.5876 10610.2355 13430.1753 22568.9051 6476.7011 4854.9544 9283.9166 18633.3809 9659.3293 12850.7007 11057.8217 4425.7713 7647.8804 12266.57 4791.8524 9262.6511 289617373 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 7066.9223 9470.6212 20379.6142 4305.4958 3591.5298 11509.0492 7055.4586 7043.159 128672.6665 12046.3128 9339.9838 6382.3154 3298.0191 3298.0191 3570.6189 10104.5385 8647.3949 6100.3721 6934.7803 4701.5126 4705.3632 4185.2597 9701.2833 5202.611 17925.8482 5590.6256 16504.7253 4328.5786 5546.7494 5059.4881 4198.6397 10321.297 308097641 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporales sp. 2 ZY-2010 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales; 23032.5014 14511.1739 6987.4862 8011.1412 13808.4761 7094.0578 23872.931 14596.6457 7376.6522 12426.8644 26465.339 9584.201 187028.4963 15162.0751 13087.6006 29337.1437 18051.2588 18051.2588 7545.5571 28982.8894 13799.7376 8146.7327 10856.6859 9717.0753 11361.8175 9846.6042 29549.8715 7841.2346 29663.9564 7414.9327 22666.9294 48363.8529 10959.4962 7882.6941 5773.3154 10309.4907 133913193 hbh Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 102942.2439 35682.0227 41678.2336 76625.72 56628.3083 16811.055 99124.0783 44304.4074 567397.9361 57287.1779 104497.3753 71679.8644 735163.3749 52150.8117 149146.9057 121285.8411 89844.1359 89844.1359 110468.97 83386.3779 52505.38 90485.3493 330281.9315 77741.964 212387.1984 49550.392 89993.3719 83899.5938 128284.6653 71344.392 213381.0243 113633.4948 46656.2514 113389.5413 114859.6013 108074.4234 284447505 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 8796.7488 40113.9352 2384.6963 3943.9185 5464.2222 6850.8336 4704.3651 4759.1966 6847.4435 10882.5574 10882.5574 3420.9597 12107.0335 10243.4891 736357.5996 9669.6961 13377.7553 3619.1531 4244.3967 7110.1371 3890.0847 13182.9031 8644.9687 7083.8752 3926.2017 8962.8115 6225.1663 6065.3163 89951792 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 5734.8732 7615.4357 19112.4678 2355.8294 6989.0157 5592.3914 36539.1148 11606.3173 59825.5901 6238.7228 8222.0241 8222.0241 3007.548 21792.0409 3886.8749 3827.8275 6270.0013 2569.6333 36048.1755 4430.9517 8256.0784 7765.3944 6646.0597 7878.4889 11941.4236 5901.1706 4579701 catechol Organic Remediation Aromatics Other aromatics Frateuria sp. ANA-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 13655.0326 5190.7191 4054.4683 5051.28 4180.5421 2315.2486 3221.698 1869.8854 3143.3643 5431.1008 3842.919 13426.7056 160917807 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 47101.0672 17091.6222 14973.5256 99855.1835 61348.5009 28391.7994 49876.2964 16826.2286 21439.6618 45854.5936 46547.6439 1784430.99 31279.9811 110742.0233 43395.0078 34986.0605 34986.0605 22208.828 57262.7694 38608.239 48651.9878 81993.6325 641917.7497 196283.3781 30964.6685 63664.613 32060.7359 212700.1975 58449.2395 55693.7787 152339.4881 70657.3686 49733.3359 18097.6121 28584.5691 73539513 xylj Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 11197.0013 12294.1796 128838.1684 27627.3694 8398.4172 25445.6525 9314.531 13349.0742 11532.9722 13416.1537 679825.7787 26044.7244 23023.3181 56648.9435 46998.1455 46998.1455 8196.1538 250567.4437 24284.7352 6485.601 7613.741 9966.1497 4859.1881 18724.1327 42468.6323 12564.884 36049.3346 31895.6848 59137.5474 10742.86 91853.1649 16187.0964 6497.7949 11791.8954 338741190 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 68758.1143 78380.4229 17701.9462 28935.7243 20977.7497 21941.1443 11926.7144 19744.1146 5356.5598 13029.6435 46423.1055 47632.7237 193781.1381 15619.3745 125008.5439 26796.1341 36805.1727 36805.1727 27461.0892 45412.0387 13628.9299 24084.6683 22842.4543 20503.4719 11329.4833 15639.2993 30933.1926 15858.2239 242513.7407 32900.34 31888.672 17111.5734 48175.6208 68901.9041 22849.8301 25230.4973 327544889 PRK Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 8707.616 114390.9238 4226.1658 3917.8148 3839.9156 6812.5434 7279.029 6834.5251 4278.9104 171533.3878 281951.5275 13260.5467 5824.0764 6783.4333 6783.4333 4362.6437 11761.1702 8612.4318 7418.1015 12377.1722 13545.1745 9294.2214 8017.5859 11913.4487 4151.8834 15012.7479 10549.1173 11427.4089 4849.6319 7701.364 6024.7329 9023.0697 11763.3382 297143836 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7913.3145 16199.5176 10903.9008 6860.0588 5101.4339 5375.3468 7651.7969 7433.4702 5930.6989 2927.6028 141225.2357 8217.1265 4530.9977 3081.8409 3081.8409 5926.4789 8747.1686 5861.6576 7143.3008 7501.2293 6600.0956 3124.4134 5777.166 9084.8374 3327.7618 17133.4138 6583.649 10188.9173 4629.323 4988.9657 5500.1216 4737.1158 20788.7709 85720801 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 31961.4022 26025.5597 35470.7186 31601.2654 21787.3198 26017.0199 20203.6888 19080.8212 108170.1498 85720.6598 25489.229 418427.8767 23978.7615 22427.2375 13404.4787 12922.8454 12922.8454 18938.3028 57374.1899 22720.1688 32303.6153 32686.3372 24721.2766 32648.0994 18828.5971 39584.0488 74478.4173 73009.9105 15831.3426 33070.806 29322.0938 25820.4409 31808.3943 25822.186 35427.5521 307546553 cmci Organic Remediation Aromatics Other aromatics Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 12730.2462 7043.9223 9623.4138 6799.21 10464.2241 2353.3054 4997.9366 18955.8029 5580.3744 7642.7199 7286.1563 13943.4958 13943.4958 5855.4363 17201.3933 5133.1922 9169.9911 7806.5785 7077.2642 6697.2331 45503.4284 4743.2997 25067.7359 9852.3825 43430.5495 3608.5582 13720.0619 6810.8109 5085.395 12446.425 159179978 phn Organic Remediation Herbicides related compound NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 45085.3447 12854.4033 18600.2157 5638.9027 58248.7881 6613.5821 39977.1925 5459.5163 5479.2219 6707.0128 7081.0206 161347.7629 16116.8921 8879.131 16641.2285 11163.8154 11163.8154 3590.9387 11735.4038 7290.2859 7038.3194 6264.5487 6977.546 3520.1263 7815.0826 35518.6294 6315.724 14672.4297 24093.3489 17815.2996 6098.1469 7909.2175 5886.8322 4348.9525 257797304 arsm Metal Homeostasis Arsenic Detoxification Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 222850.9571 93186.3958 77462.5092 488036.1902 54367.5951 26459.6763 47447.4263 116633.8237 81897.7351 110791.7639 82732.2651 98136.1085 1101057.5632 128659.8779 116994.2891 141723.3473 150214.1092 150214.1092 76570.9483 258186.3676 391795.556 101452.1562 334920.5562 73528.3688 120657.7923 95589.3703 102625.6756 86849.7715 393749.8665 117821.5489 146350.6036 215551.9989 125933.5289 135751.2295 65308.3593 116877.6254 146191733 vana Carbon Cycling Carbon degradation Vanillin/Lignin Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 47242.8546 12836.0092 861766.826 57748.0094 14266.2122 8017.5745 67125.4284 5972.5335 14637.7542 21307.5557 14276.0584 400016.8951 22359.0801 21400.9377 24909.6899 55404.2252 55404.2252 10881.2725 64829.7181 20659.9944 52531.4554 17300.3617 73412.1714 7529.7358 15977.391 31780.7695 9721.8991 148045.7855 61327.1291 89113.0488 9607.8713 12331.5917 10294.4821 7376.6959 56324.7665 149361059 mer Metal Homeostasis Mercury Detoxification Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 246011.8859 103151.3433 75171.185 808114.6023 20019.4349 69500.2643 133378.7025 44307.8903 69935.7963 241442.059 70739.934 271855.5027 126301.6054 125263.6585 94645.8648 236104.4744 236104.4744 42636.6848 121674.333 83507.8648 119356.2233 274761.3055 111768.9102 211469.05 68106.9755 91961.7669 64837.8453 261004.825 131349.5899 90595.1739 63945.6443 63803.8024 78020.4914 60923.3102 127374.1994 26278846 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9253.1362 8338.6764 6901.6841 3319.2404 2392.0288 2812.2094 4968.5731 9251.4682 4659.2325 80084.4409 7596.319 5040.5348 4470.2105 3725.2996 3725.2996 3633.4884 12440.5508 7139.9185 98312.2221 8166.9168 17534.7256 3707.175 4502.117 8409.6773 4681.534 11569.6588 5388.2876 7823.4361 4574.0818 4492.9458 5073.3634 12588.96 9109.1145 317170478 dehh109 Organic Remediation Chlorinated solvents NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 41588.728 7402.7912 14139.2593 31356.5611 13635.3166 5505.5348 13216.1916 4227.883 21866.489 15530.9767 12920.6293 265511.5486 11342.8807 42648.5151 15930.1787 9759.145 9759.145 16059.3306 25095.1243 25569.4212 17157.4958 35607.8295 20100.5333 8583.3771 8986.0355 78029.2766 7522.276 46033.8911 44151.1706 46776.0432 8121.0228 11210.1721 28237.1478 8362.2248 41887.044 163792890 pcpb Organic Remediation Herbicides related compound NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 30445.2271 6462.1348 16144.321 38547.2518 12056.5077 10531.0422 15399.8882 4870.7894 30779.5199 79239.8076 42517.4716 250616.6314 35824.6504 55362.2 25271.3692 62183.8718 62183.8718 36259.2982 43746.7963 14462.7219 123274.7417 39279.0624 37054.5199 23054.8219 46574.7899 220841.4022 50092.2481 78372.5102 20239.0564 40435.4219 14282.152 56080.6692 53027.5725 36732.7284 29984.4878 353247761 axe Carbon Cycling Carbon degradation Cellulose Piriformospora indica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora; 9208.1855 26782.5672 7272.646 10045.8095 8065.7881 9068.9045 2400.4442 17450.4146 9260.2135 4991.5436 384898.065 12197.6198 12259.4562 10532.9365 11245.9647 11245.9647 4747.053 12200.8125 9238.6827 10925.7296 10939.2486 8295.7194 3246.9239 6827.5534 150275.539 5433.4282 60809.1924 5940.7546 15044.6564 3272.454 7007.0887 8796.9309 2803.0085 7495.7926 260777262 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 5275.05455 14576.34565 6533.2846 8624.6784 5379.6161 9089.62515 65508.72995 8638.9359 5115.71595 9362.30935 6513.24235 6513.24235 2947.5377 7838.05785 28275.6519 3799.5795 18695.4831 6392.0198 2191.3188 3877.35885 6616.2164 10391.4221 24487.407 26434.76495 8904.06215 4538.986 6082.9545 4534.19445 3410.811 6589.6966 319784883 cmci Organic Remediation Aromatics Other aromatics Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 5580.4856 2190.8867 4821.0319 1858.0682 4297.7033 414818.1583 3952.9647 3143.1653 2813.0632 6031.1552 4670.5143 5769.0215 3907.5605 7962.4976 2278.3473 5283.0317 2679.8508 6856.9499 2773.5119 5159.1795 3521.1627 5738.8463 2982669 gdh Nitrogen Ammonification NA Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 70081.0992 14633.9504 24993.3445 17734.6282 2304.1578 31403.1259 26446.8463 3395.9542 5503.729 7041.8166 4359.6919 12367.4894 12367.4894 4040.5249 8548.4416 5189.2187 4431.6026 8931.0711 4664.6567 33035.9659 7292.2561 6531.2899 3379.3567 9038.561 12547.8365 10765.06 4956.8765 5788.0406 11527.3486 7032.832 326196654 urec Nitrogen Ammonification NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 5319.4584 2384.4684 3722.5606 4126.8044 3296.1957 66169.0331 4075.3977 5598.2089 3921.8586 3921.8586 21258.1552 3968.4247 5893.541 15562.9324 6869.6236 2752.98 5896.3545 4611.0267 11081.6653 6056.2538 5634.407 3792.9657 3005.1295 3246.7121 7201.7388 4772.5541 119955112 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 140784.7578 28063.9216 25822.1929 61323.6005 18251.0585 30555.3252 40612.5071 118863.836 83303.6462 80233.5038 27007.1666 824013.4324 41336.5854 73902.488 76997.6363 42196.5107 42196.5107 158216.9175 120029.182 52495.3047 107597.3475 73373.4875 34763.4722 31878.5696 45241.9092 724154.4632 27112.4592 217654.9022 81119.6773 94190.0901 34776.2361 69337.2083 66918.3516 272058.295 99712.6009 258557205 poba Organic Remediation Aromatics Aromatic carboxylic acid Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 17377.5804 48121.3016 9416.6018 12154.3706 9064.145 16617.1818 5389.4209 7227.5901 8379.766 42292.4673 6022.4192 122105.5407 7318.4538 7096.0253 7020.0136 5936.5984 5936.5984 4924.1657 16772.7849 9012.497 9506.4148 11219.8021 57895.0751 4998.3206 4981.662 17610.2585 9816.3094 15112.6775 6242.8348 10899.2367 4394.8499 5976.1598 8707.3049 7805.0529 18102.355 72121736 linc Organic Remediation Pesticides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 15845.633 25391.8462 7031.1827 51535.7918 21329.1004 5231.7709 32123.1934 22717.0382 21184.0963 20543.5028 12475.7879 178238.252 14866.5909 34858.6139 51042.656 25883.1027 25883.1027 8480.7918 20688.191 13288.6683 46604.1215 14784.1831 10434.8194 11127.6653 11348.9806 18837.7626 4912.3076 17880.3734 15044.6507 23840.9581 16568.6677 10891.4058 12178.561 3910.2691 7320.0573 325181983 actin_Stramenopiles Other Phylogenetic NA Albugo laibachii Nc14 superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 5706.459 5871.7314 3911.382 2665.9286 3967.7968 3580.3982 78845.3806 4135.2579 5076.5087 4150.797 3065.2554 3065.2554 3288.9918 6596.2665 14407.6592 3463.6926 4136.3353 4369.4135 2227.2514 3563.702 7679.8448 2335.2476 10605.8499 4690.3497 7493.6282 2300.1432 3650.0442 4418.0788 2759.2259 4523.4118 359372176 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 65227.6869 46521.2866 45101.0534 74180.7919 37227.3219 19816.4316 75419.9064 58066.1149 169246.9485 41444.5779 53211.701 36335.0568 1078258.4353 74399.2288 91896.749 74706.7733 55162.3458 55162.3458 38603.8046 83609.1953 50922.1065 89138.1893 140812.4165 140253.3472 67459.8436 48804.7856 64084.5281 52515.5241 132856.8766 50246.5762 103900.0989 49168.9545 42638.0567 51606.8367 33464.1118 172431.6461 254463156 SoxC Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 13012.1589 7241.7034 24438.0935 125637.5438 8194.5712 22595.1086 5276.6795 11483.6663 15109.8433 16046.7337 153513.8831 21411.2159 17101.136 18050.3147 8210.9746 8210.9746 5399.9869 17843.3151 9315.0865 3390.7223 8865.0057 5989.4999 3027.4168 8147.752 34141.5181 5714.5116 25399.6599 14558.808 14822.2633 4712.7775 16949.6545 10552.1824 4741.5661 21646982 SoxB Sulfur Sulfur Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 20227.0398 11000.8191 104580.5003 7522.0596 19856.8528 19844.7957 41871.3669 7389.9849 52232.4434 94389.0308 30481.3107 947694.4082 37303.159 28100.0612 21657.0823 27905.3686 27905.3686 15878.0244 47710.0559 47455.4105 25807.9906 22067.3034 51137.0602 22816.9995 28574.5932 70164.0258 17798.2663 78956.6293 48034.045 29309.905 10773.0172 19179.0183 42250.6828 13289.1601 21877.2216 305680315 amyA Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 7062.0645 6517.0122 6368.2248 5521.4707 5674.2314 3672.1875 3420.8453 4421.2029 4789.2754 6511.078 7185.3265 8288.5767 13499.4226 3985.0252 3029.5 5783.495 74057795 aps_apra Sulfur adenylylsulfate reductase NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 81450.6317 5400.2258 7098.5647 26571.8223 9517.2041 10532.6467 24802.7042 29877.6675 13324.6621 17462.3096 20210.7885 370803.079 109547.9248 24195.3355 22222.4267 28022.0903 28022.0903 8259.7389 21353.2266 40990.4498 41547.0818 27970.7419 24653.5607 19031.7434 27703.4025 23578.8288 9663.6225 55563.4223 25989.4195 26288.7232 17998.233 8873.1074 15833.0887 11555.4883 16724.5805 148252062 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 41599.5593 6647.1003 322325.6387 8658.2193 19998.8592 6567.7292 6742.0502 17841.976 201846.2785 7694.2276 9360.0541 16501.9838 42332.9105 42332.9105 5014.5624 27074.0108 9394.9206 11094.5437 10980.7325 12031.9436 12573.8498 17406.0204 32112.3903 10335.6096 29116.8514 12131.1402 19285.2077 6188.8221 11758.843 53661.6736 21605.3721 14488.3191 312200812 xyla Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 46096.9114 15687.972 9533.4171 17078.5799 20034.6386 7321.4713 8165.4623 20754.8865 108588.3775 18078.6982 1239048.2989 27192.1744 11313.9066 6795.9753 13050.0299 13050.0299 4358.6986 25751.5386 14368.3137 15099.2797 19990.5209 5189.7487 8349.6026 9680.9612 16289.1906 33023.4182 22444.6153 44258.8954 19545.652 14271.9056 15290.3269 23901.608 20861.9434 9604.6354 356477818 amyA Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 17623.7271 77201.8144 24581.6191 32940.7134 15768.427 25762.3249 51480.4786 18495.1734 34578.3102 25926.2367 20999.194 365009.9043 44602.9173 29727.2822 52370.9137 14151.9607 14151.9607 17886.0399 39477.8651 26251.57 21904.0914 206527.1383 26369.991 10313.6816 135702.4183 28834.789 33514.7472 65488.1531 41071.3729 36531.9435 34508.009 25188.144 30882.3357 76383.2862 36487.4661 113953110 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4989.6596 8582.1723 19042.2077 3846.9987 2570.158 5330.5681 6992.1498 3415.4939 146846.4663 10137.2915 6989.1481 4653.4662 2887.8689 2887.8689 5824.6971 12039.5593 6343.4334 12868.4259 7835.8011 12416.5522 2848.8567 3685.3081 11909.6677 4507.5933 17679.0282 8266.9711 11749.1507 7842.7112 5936.6161 8925.1724 3459.1129 11495.811 338994548 amie Organic Remediation Aromatics Other aromatics Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 4584.5388 3143.996 341925990 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 48168.9254 2844.0881 2844.0881 4722.57 304345387 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 6575.6357 6068.6945 23621.2567 9914.5194 5134.1341 6188.8442 5651.4594 5511.2825 254693.2646 4683.274 8701.5391 3613.919 3613.919 5378.4099 15111.9385 5088.3014 4820.0207 10041.9385 7059.3723 3045.6279 4683.4333 17451.6997 6577.211 13457.721 11068.8009 12393.9389 5160.9496 4242.3885 11934.5745 3909.0092 10059.7965 29891971 glx Carbon Cycling Carbon degradation Lignin Ustilago maydis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 15646.0229 14412.9411 4841.2567 21500.0403 23711.1238 6671.7949 54481.6802 17005.5697 14788.8792 36134.3314 176866.7658 39774.8163 15254.2439 17738.9539 10461.3191 10461.3191 10449.8989 26540.1093 14177.4376 16218.1017 29270.4724 8071.5405 9062.8002 19644.1126 19086.3845 6429.4043 38157.9504 12029.9843 34533.9704 9347.434 41517.5415 26867.3988 15406.6174 18023.6758 299133407 cysJ Sulfur Reduction NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 7780.7809 365539226 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio ordalii ATCC 33509 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 11853.8396 9133.059 29616.0109 7310.5304 12573.5721 10362.3557 5378.926 22207.5935 27260.3973 18565.8499 257168.4255 51922.977 18772.296 24962.5315 12183.7975 12183.7975 10199.6699 15684.3078 29599.5027 14094.4992 9247.4522 10857.356 6091.7291 8627.8548 15116.5805 16669.8007 32367.6449 15392.3048 20673.0516 9082.3399 10793.908 12164.6201 4781.0453 11666.5223 91682461 ben_bcla virulence NA NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 26903.8585 14894.9804 25904.8186 62823.2084 13419.2557 103482.455 24739.6409 24755.6809 47438.3297 23807.2288 15401.3035 492503.8725 30073.6062 32621.3319 30319.4583 23784.1501 23784.1501 16358.1427 36019.1778 27723.1567 18438.125 27943.9118 43521.7036 15981.179 25606.9987 44287.2554 52023.5708 272654.2443 52644.7676 32800.0427 20434.5593 39493.0526 14761.6529 17717.3349 58578.814 51869938 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 51976.2492 14235.2626 654675.0846 20660.5056 37594.388 8616.3539 30046.4882 16790.6133 18134.7029 17191.8138 28160.9725 29165.6216 440370.6625 30520.165 33313.5035 58496.7798 41864.6033 41864.6033 18718.79 98492.5074 25144.8178 38659.4439 104693.4594 55296.7353 57027.9328 31187.2543 65104.8098 45765.5416 62690.1568 33440.3721 70946.9666 26114.5396 27226.4373 28828.2846 20703.5275 47111.5029 52347648 RgaE Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 19973.9706 12596.3176 6849.7717 11266.7616 5813.4462 6345.4101 3528.2601 19622.9783 11300.3821 27800.3889 221539.3025 9540.4687 14071.5599 8590.1909 6382.6 6382.6 5643.3481 11945.1121 5602.6652 11963.9207 94566.3908 10052.5609 10742.5582 11037.4736 7592.9497 4564.36 20113.1841 4774.0753 12187.999 4783.0277 9530.8418 6884.1838 5250.3806 12765.5755 118703430 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 40577.3135 15384.6516 789823.7392 46676.0469 52183.9237 77745.6661 22754.6646 29607.6175 29686.1295 70193.5762 77870.782 135533.1535 8573298.2369 32176.1743 37228.9108 27473.637 26962.1025 26962.1025 24124.6751 46530.5225 32314.1029 55215.5447 371293.6961 74988.3034 13820.2399 46766.1412 53037.4086 25017.7342 138757.1389 46285.168 68959.771 41132.6781 31871.3901 49647.3744 39306.1968 26461.5772 149142298 SoxV Sulfur Sulfur Oxidation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 32961.9136 30367.809 25971.5427 14097.6959 13050.0091 49646.5059 19495.4733 14604.5764 34338.8898 28124.0322 14192.9105 768698.2518 37677.035 34401.4268 27157.4652 20768.2287 20768.2287 17372.9208 33042.4585 26030.945 36137.8003 27512.2574 45680.5641 13291.9773 20678.7036 28922.6501 13552.718 50120.6539 9602.477 34482.1101 19155.7369 18302.3248 22545.2027 14890.9817 29749.0604 323135576 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 6182.5494 5456.8864 13258.4359 3841.4265 3969.8903 3893.2546 6962.402 7305.2769 90094.2467 6653.8726 9353.1024 5849.9233 3391.3261 3391.3261 3865.1557 7449.3031 5626.6985 5458.6085 3837.5476 3948.6757 2530.4926 6491.2061 2664.2081 15388.7756 4949.9723 7161.6347 2564.1746 4428.0342 3688.2714 4137.1643 7416.8743 217330187 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5449.8891 4195.7471 5902.5842 14591.6032 63147.8308 8973.0095 3529.5645 3529.5645 3013.0593 5771.7589 6341.3366 11170.922 48023.2994 2383.8966 4051.0053 2258.4815 11291.3751 3490.9203 6576.778 3671.9657 4255.5532 3761.946 112463277 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13413.4064 5675.5688 17879.0983 58829.0465 7980.1164 12945.5798 8529.8159 15362.6304 8257.2289 227526.8487 15643.2619 11265.4112 6095.3557 12099.9243 12099.9243 5263.5609 113251.7009 12457.1911 19548.6745 152746.8394 9825.7202 6172.9568 7633.015 15446.6643 7465.3678 30430.9638 26054.7764 12966.0327 11324.4776 10601.8026 15507.8471 8351.1288 16002.0703 392420901 catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 12019.9081 10475.6446 6993.608 18827.3228 8067.8182 5198.6818 69369.174 2807.0486 10129.2013 13812.3793 21822.0554 285020.0732 11921.2336 298070.6463 32831.3505 70034.3202 70034.3202 12373.7697 21731.5952 47629.8123 8813.8811 14732.579 6560.2849 10518.5921 17818.2551 50692.8378 40650.7371 106079.9895 18048.5309 13397.4611 12035.3105 29141.2256 15572.4452 14727.1617 327545300 PRI Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 57632.8234 41443.2122 23148.3416 45253.2286 29641.3728 141720.6957 6966.9998 68938.7504 37756.168 59396.7992 801291.6707 28194.1176 56915.8061 57069.0646 19453.5306 19453.5306 52873.8199 54381.091 36355.613 32919.9961 96196.3132 21997.9249 35656.4836 21190.5377 43053.4089 63050.3336 72826.6548 44680.9062 33843.5289 24892.09 45500.4781 61667.1386 28571.8828 45549.0498 30138789 arylest Organic Remediation Aromatics Other aromatics Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 39470.1739 9693.0166 27415.5965 47899.8054 17804.2908 12832.5263 20412.3079 8873.8285 20653.9041 28355.1291 17958.2021 388853.8199 25850.5007 28426.3876 52182.2098 23544.1068 23544.1068 17616.5182 46120.9857 29137.3461 43084.2337 31553.628 24820.0175 17380.3935 22058.3561 36130.0647 11844.4279 47794.3859 32505.8211 43779.6363 19055.6744 21944.4182 30380.2426 12852.6754 44436.9156 214028622 soxY Sulfur Sulfur Oxidation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 183525.6065 16765.2907 24499.7782 54112.0095 108945.7801 35417.5074 85501.8649 113063.7853 41661.6456 35750.6727 90070.5571 113017.2722 987427.6039 164376.6028 77170.8766 66210.3301 82541.2836 82541.2836 58727.5469 73067.0615 46846.1351 41292.1568 374709.327 32102.3427 39138.343 56241.872 91600.1545 35012.7937 129339.9063 96420.4422 85944.5588 114375.6041 40330.6965 35396.6768 35056.6181 223838.8138 110819318 xylc Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7623.9724 11567.8432 4920.1136 6864.1851 4953.2227 6390.7062 6820.0997 117108.4067 7820.4466 9232.9267 3103.271 3103.271 3349.4529 7457.1884 5772.8062 6466.6967 36351.2167 2308.7692 3424.3132 8190.9016 5506.7263 12337.2062 30557.7378 8590.3028 6163.2439 5826.0845 4817.8929 10316.7672 229565886 amyA Carbon Cycling Carbon degradation Starch Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 4826.5114 3061.8754 4219.2658 29293.9763 3772.5224 7792.5788 4282.2992 5526.4097 2404.8025 5268.0754 1708.4842 2564.7165 3115.8339 2955.6968 397733548 alkk Organic Remediation Others NA Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 63518.0196 4565.1287 4878.3528 7428.0502 4872.1737 336428186 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 28788.8436 19917.7938 121673.4089 13893.3052 15844.4357 10877.6926 6640.5972 17227.0264 19305.8 24123.7776 5736940.2751 26711.0059 30556.8996 18549.4566 10500.5288 10500.5288 25791.8454 24741.7132 20444.4537 30473.488 26644.4434 28114.4838 11900.6471 9928.0187 23601.7203 11784.1427 67968.0523 26606.9279 33696.9994 11288.8738 18331.6009 14389.4746 22092.091 107613.2204 114227515 TIM Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 9115.5923 17275.5796 7706.1226 6763.228 4679.0525 8152.2244 14834.1863 4057.0562 266595.3456 12180.0391 8502.7327 8439.418 3280.5059 3280.5059 7465.8943 17764.8242 12662.6559 9112.0026 9638.9037 6714.4436 5835.8468 6646.5782 13549.0451 5540.8307 25414.045 12007.1791 14048.79 7240.4196 8160.1578 6948.6402 7820.3951 17332.6437 290954821 hcab Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 24395.8324 6441.697 9139.7316 8370.8041 3557.1758 25695.2893 42866.6073 3600.0262 10394.6395 9458.2716 97893.6061 9431.2034 6228.1351 22314.746 11819.6202 11819.6202 13755.2118 17779.2058 8253.3607 19063.1588 40459.0654 6631.9815 9842.425 16474.5324 11860.758 31225.9363 43541.9536 16963.7901 14936.6192 5670.7525 8106.9066 9717.5817 7216.8444 14290.324 116194332 Sir Sulfur sulfite reduction NA Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 15158.6057 5505.4336 2578.2215 4304.1532 4020.2433 4889.608 2801.4981 9313.0358 8108.6017 11330.1175 5870.4075 3018.8682 3540.1916 8170.764 3452.6855 11734.6337 4526.0056 6717.4941 2306.3372 5150.672 5611.6482 3584.4232 6925.4793 325519915 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. TJI49 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5995.4384 1063303.7872 5741.4444 3134.4465 3299.1673 4647.0544 7337.9694 3833.381 3833.381 3065.6079 5215.8875 4081.2528 12408.8551 5610.154 3858.2358 4643.853 6431.7188 2221.0765 36267.651 8579.2568 12940.9379 2312.0067 4056.882 4656.4845 2700.0977 11325.9649 256680807 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 22889.5071 15799.2514 1271762.1175 16176.2253 3620.0189 14671.8617 8232.6268 6124.6202 5739.9471 15380.26 115797.2499 4819.5003 7232.7473 56183.2871 330133.1052 330133.1052 3147.5788 38945.1325 8999.9992 9058.086 46538.452 11018.8559 6981.719 13355.1536 10803.0846 8744.1569 16229.7387 10059.8221 9930.7773 7635.3859 10508.5922 13785.9793 35359.1615 12053.6655 5531409 alkj Organic Remediation Other Hydrocarbons NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 19177.7705 10272.724 32960.2954 29713.6103 4979.0223 17906.4611 18102.9273 12009.0535 19672.9722 24833.8788 12195.3614 663855.9016 63360.7718 23047.3111 20002.3648 19785.365 19785.365 25190.4897 50431.3822 34971.2509 36261.9066 25209.7527 50804.7696 11361.1116 21211.247 50776.8582 15240.4819 59164.2889 28816.3964 61019.4904 15113.9699 33187.9415 30031.2752 11561.4257 49513.1233 397718181 phn Organic Remediation Herbicides related compound NA Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 14996.4862 140743.9868 10428.9163 8579.7084 21551.3918 224787.2936 9769.2694 17209.0946 26259.7168 21980.2352 334220.5569 13239.5672 54179.6606 44684.6487 44029.9805 44029.9805 20511.1728 47675.8968 13949.9967 17052.0219 23135.9857 14442.1151 14200.8587 19527.8313 35295.4282 13190.7855 35787.5766 50090.7654 36274.3899 16277.8113 26315.7948 29802.7841 14620.7409 50165.3105 114321987 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 42643.5382 12609.7229 74028.0764 14606.6869 43526.5853 22487.8083 24334.2432 27597.3784 48004.8805 30795.9813 66182.4108 57690.1325 455240.1808 86958.9351 58584.5235 84851.2124 34481.0525 34481.0525 37848.441 70552.0571 32942.2202 31580.383 49074.0813 18554.4154 52678.7297 37651.6364 52527.3109 36519.2455 83385.6878 44977.3279 62704.5138 26845.0307 32070.9359 60029.0038 28016.8212 56934.0519 349700497 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 3825.4489 481082.6384 46513.3618 6833.8304 31396.9438 5412.5226 6799.5927 11515.2604 3553.0263 3279.8557 9835.6179 5114.7134 2524.0091 363415775 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 9002.3665 10267.9105 10316.3031 13040.8728 2172.6221 156227.625 2994.7045 9931.3743 6254.281 8203.1593 115598.4313 35009.4664 6382.0188 11969.1607 6340.381 6340.381 3670.5523 11852.2934 10558.2555 9542.9294 18259.1185 74206.5222 3300.5976 28511.5063 16038.1786 126350.3064 47002.3153 7793.9472 10627.2667 3091.3608 7301.654 14181.3259 43276.3734 14653.8804 164455670 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5326.7993 145789.5147 5120.5994 24672.1233 2864.0477 13749.0757 2995.6417 11578.1009 3536.6946 182139.8674 3894.3741 17384.963 2819.1023 8986.2971 4563.3025 5176.747 10588.9579 5018.1706 4513.2335 6260.4157 4344.0887 10908.1555 6439.5359 9630.0807 2915.2078 4969.3906 4241.106 3807.6565 6032.9049 302918152 cellobiase Carbon Cycling Carbon degradation Cellulose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 6494.9954 41706.9211 20703.2791 36208.8114 5359.2146 19084.4305 6215.7051 17640.2331 77006.9668 7482.7656 12631.8607 196520.5652 17375.186 19168.2149 7020.2197 5676.2818 5676.2818 4236.8445 16051.1601 156560.715 5295.0141 9531.8213 9937.9627 4734.7629 8536.7574 18127.0267 8907.9411 18195.2743 11890.0092 15068.7352 12939.6852 7274.7435 21254.663 23574.8348 10233.339 324110335 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 7313.5799 8638.5076 18831.5869 12490.9543 8477.7011 5979.4796 4499.8436 4342.7158 5645.2755 5103.4412 82803.4037 25554.882 8172.277 9882.6053 6019.6422 7479.6968 4323.72 28113.1304 15180.2772 13926.8767 7190.728 14161.1897 29290.1884 5351.8243 3283.4112 9412.7643 5269.4611 5458.1204 5841.5071 222543198 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 23221.0842 27682.7236 2881.1552 6263.2563 9008.1779 3709.9578 3130.0381 132559.211 4762.6194 3979.8524 12237.579 12237.579 3429.2444 8888.7104 4208.2619 5639.5428 7830.9724 12713.5532 2536.2309 6716.6091 3125.7764 9873.2373 5693.1725 6239.3961 1948.436 5968.3978 7224.995 2572.5444 4452.5198 70731214 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 172243.3528 8159.7063 10365.3529 82851.7531 13609.9085 49571.2586 12785.7362 3544.653 9998.1069 16457.4016 35942.4547 308990.8919 324861.4687 19441.6065 25616.9187 20059.9449 20059.9449 8472.7703 16536.7042 14002.4367 20011.7069 12367.3242 22616.358 7089.7583 12238.7202 418438.6375 7198.3179 27906.7505 29542.0554 25175.0051 9630.2718 14150.8318 20209.6228 5568.3711 14307.0643 169627729 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 874455.3406 7210.7365 25524.605 26059.4824 22861.8809 7492.6528 16509.3686 3359.6349 7180.6777 8191.9555 5841.5199 149112.4332 9276.0905 10770.5856 12184.3107 20503.6755 20503.6755 6365.3466 15874.3964 14933.9537 7738.6057 37005.9968 35005.0064 8918.9121 6707.2954 16763.8463 4561.3186 20633.1817 15921.1388 20024.6757 6403.642 9537.2156 7750.1453 7168.2091 18280.4562 210159903 ppx Phosphorus Polyphosphate degradation NA Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 6467.031 4442.7681 8611.8878 13108.4417 2598.453 3287.6793 80847.8907 5271.4057 16808.8938 4396.2921 4396.2921 76281.9 2445.2145 2371.2065 3905.3015 4157.4064 306516909 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 215864.1793 31351.765 87261.7099 66522.2348 169095.5774 47916.8475 419632.991 221766.6379 110513.2509 138936.4429 164960.785 113312.3374 2666349.4888 158473.7975 131496.255 150400.869 168407.984 168407.984 89324.2298 139618.3095 114083.0289 89669.5395 164664.8717 202631.0889 51356.9689 82968.6079 700883.8368 131936.2586 313306.0186 80917.844 109823.3735 76959.2318 107516.4656 117148.3932 87958.6938 137236.1021 29125946 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 7728.8513 6457.7889 3451.4508 4975.4705 22152.9389 6251.9267 6251.9267 28610.6651 8229.8146 12228.7695 134733.1853 2075.1576 2841.1671 3874.2112 162285079 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 22220.1051 51088.9179 319250.3286 8802.9847 11204.8428 36996.8988 12092.7197 21816.4453 6291.7907 17696.2907 12560.6067 14646.8072 296315.7295 12833.5646 28266.2966 12318.7654 11618.2829 11618.2829 8655.578 18780.1012 17980.5158 145370.2053 178603.5592 19411.3757 7685.3456 12281.6329 19431.9504 9216.9286 25429.1394 9145.351 40792.7673 9417.4016 12315.5671 13148.5717 7960.0245 14022.7019 297592219 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 59451.0035 7283.0594 8389.2449 2458.3489 13956.3366 58276.6197 7656.4391 13218.9471 14375.2913 78104.5792 4907.739 5009.0846 13886.9435 9306.7618 9306.7618 4691.2659 13599.0719 7749.1326 17420.7452 29892.6075 3847.5115 3798.536 7519.8876 12872.9723 7351.2157 13564.4618 3431.1959 7610.3795 7028.2512 5173.2344 6964.2956 133913413 amyA Carbon Cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 99839.1339 29853.4135 93956.2838 29201.5521 12903.4558 217200.5195 13501.2015 12160.4116 22091.5186 10337.4901 304560.4638 18654.9931 16888.7771 45720.7169 32370.591 32370.591 467122.2529 63881.017 22700.2021 110198.9994 40071.8539 41462.1963 31206.6457 35009.6829 33620.2641 17130.1366 50519.1987 36169.8662 28739.6127 15937.8577 81803.3189 21602.7776 357540.4031 32567.3375 359840651 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 59992.7692 1339045.2373 184385.0322 10707.9383 9864.5809 20455.8762 5750.1489 2542.8038 8905.8476 15418.7819 8079.4979 271800.3053 13625.5535 14239.7168 15330.7465 10947.1522 10947.1522 8176.4499 12102.5055 9728.9638 11833.6579 19573.0127 12301.2772 18920.5545 7926.928 13559.3826 4878.1098 17880.6737 9499.8137 16150.8233 6912.6254 7116.6816 9635.4315 6029.2703 13526.033 340346640 pme Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 10105.2784 79475.5027 2752.9298 68004.869 2228.9909 2228.9909 29177.2712 3523.3993 11541.5386 37359.0554 4673.4048 2458.1197 3997.8202 27188.9509 302480920 amyA Carbon Cycling Carbon degradation Starch Atopobium vaginae PB189-T1-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 16970.4613 2147.0594 6072.8248 15544.4889 164201.37 2378.2602 3648.7384 2886.4863 120612180 urec Nitrogen Ammonification NA Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 5996.4289 42515.4319 4422.2831 182741.6515 2130.2169 2048.2747 2857.447 9180.7929 9180.0822 2976.1547 56785.8102 6965.1802 4993.5597 10369.3133 10369.3133 4618.5879 9512.2473 5253.2878 43628.3942 6731.3907 9552.5137 6044.1151 7860.1164 7330.3656 16462.8366 4664.8181 6192.6776 3132.3691 8132.498 5775.5196 5202.6443 4801.8482 17430694 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 14675.7785 9738.1401 5123.3253 16823.8547 7814.2093 6537.5059 4848.9638 3325.6522 4633.3385 5924.1878 4157.852 108582.8401 4644.8453 5601.1772 21551.3934 7331.61 7331.61 2925.2494 10177.3181 5635.0559 5165.5683 7733.0639 5382.2485 3673.265 4910.7726 9154.4149 36682.1779 15263.0813 9078.4338 11464.1121 4391.2926 6249.8724 4934.1911 3145.3473 19747.6344 117924502 nifh Nitrogen Nitrogen fixation NA Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 6184.8061 9401.4666 4484.3639 4422.986 4251.2135 5985.3086 6762.4951 157005.31 6851.4587 9180.9951 7167.7717 2607.6177 2607.6177 5588.6147 11682.4479 7785.7264 8381.6848 7454.9349 8333.2047 5426.0156 3376.2475 10432.9124 4513.7354 17471.6865 8763.2501 9239.524 4835.9168 6159.2486 6590.4712 3771.7889 7918.9617 94424356 RgaE Carbon Cycling Carbon degradation Pectin Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 43723.9295 7860.7287 10091.9133 2883.7821 2757.7187 3016.1507 4280.9623 3657.5175 25696.7555 6229.6662 6229.6662 3728.9889 57800.6591 5782.3136 3222.8691 6022.597 22232.9811 2885.1361 4730.5122 2274.8918 359821962 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 17454.289 13657.3703 7628.2633 8314.0976 5209.6914 2146.2012 5812.8052 3704.4654 5064.7637 9074.0606 150902.5617 5458.246 11209.4163 21782.0675 20576.4312 20576.4312 2517.7714 4312.2501 3528.7705 2996.8284 4126.2561 8576.8509 2761.138 12918.9047 21368.2381 11957.0864 5056.909 28778.8211 6473.2448 2312.7572 144898603 pgk Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 4627.6851 12028.9766 2750.0854 4517.4737 14607.9355 6782.0287 8305.0889 8269.3893 33140.324 7174.7384 2896.8067 32965.0983 15530.1128 6218.6844 5385.0152 151840.8999 5614.7992 17805.3304 371771824 RgaE Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 13309.9209 19626.1882 67414.2369 27197.8223 15680.9888 13168.7148 10031.3182 14125.6271 10119.4533 17020.217 22165.6984 11463.5215 369432.0624 31747.8949 43537.595 64905.1596 34314.7158 34314.7158 10105.4661 32209.0162 16793.9536 259707.2441 18513.2287 27341.369 11789.5795 14968.9155 41295.4103 12549.8106 82828.4249 49396.654 22831.797 8766.5216 12799.5983 22294.287 5627.6459 32558.6634 118502249 nitro Organic Remediation Others NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9262.9338 28507.5874 13762.1707 7463.3777 8928.7845 14810.3346 16196.0185 10752.9355 25973.6766 8342.4125 188167.3082 11054.0247 11994.9603 5442.5145 11415.1106 11415.1106 113250.3195 21054.7121 10348.2329 19754.0321 13183.4075 13660.0294 6722.9674 7519.2124 21336.2345 14836.7091 46502.4818 10582.6872 18685.0843 12527.1626 22600.5635 8286.6346 6092.0963 9520.3306 239582633 phospholipase_B_fungi virulence degradation NA Zygosaccharomyces rouxii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Zygosaccharomyces; 22467.3048 289832.3903 25049.181 14114.31 5627.2188 3739.2178 3739.2178 7085.2216 9045.6196 11754.0807 2746.8062 10758.65 8738.987 2830.9448 12045.1912 308225478 FBPase Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 1170993.423 54498.7876 162339.0717 143988.9228 160230.9096 109635.2191 108658.9992 345934.1805 71763.7065 113854.7584 115838.7867 129558.7067 3283242.5137 162807.0472 179690.2284 351451.9636 186337.6414 186337.6414 82606.6275 224188.9069 103115.8972 292989.88 150749.9178 143644.6697 76885.9488 87650.6777 248171.6264 226280.8553 326444.4204 207650.421 233390.1063 118596.1526 112712.4779 159355.3487 84325.4141 146511.868 254970370 tehb Metal Homeostasis Tellurium Detoxification Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8232.1319 8221.5527 9176.2073 12881.5919 5480.9248 4215.8099 4110.2441 7365.8385 17452.224 6027.063 171141.6306 10135.3061 12430.9475 4597.2042 3802.1102 3802.1102 5944.4314 22764.0985 10749.001 9472.4077 14725.2569 7508.3378 5547.2191 6032.3738 12352.3304 4582.5886 19837.1662 13141.7758 13890.6615 5448.721 8307.9521 8871.0679 8950.7003 7297.0255 292655130 rubisco Carbon Cycling Carbon fixation Calvin cycle Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 49070.5365 15746.9494 62814.703 133925.8926 120936.6527 45613.2513 11908.2229 41652.2589 35986.2272 101679.6583 28913.7797 46619.398 497442.1088 101834.1301 56826.0956 52833.0419 57917.6862 57917.6862 39940.7891 60262.4333 34626.8111 61725.2737 38587.3152 60469.8404 48074.0086 29125.9439 75583.2163 17656.4842 77139.9399 55772.0561 73577.0026 17527.1602 27500.6888 100429.6514 13819.8357 49209.087 334123215 cda Carbon Cycling Carbon degradation Starch Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 4140.9684 8399.4963 6441.767 37528.6519 4209.4227 4722.3512 15469.4725 8156.015 17374.9319 6076.3657 8178.9148 4419.2616 5219.534 170934034 dsra Sulfur sulfite reduction NA Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus neutrophilus; 43941.6133 11356.4667 18298.9761 49895.3296 9613.0193 14874.9321 11847.6828 18303.6689 26139.3942 16324.5498 20202.9139 331969.5758 21953.9841 32870.5687 24592.1893 29050.09 29050.09 22509.0648 28371.1153 16420.0071 27393.1092 31690.6203 170447.571 10026.2394 8874.418 21796.357 8760.3562 33563.1807 31681.9775 28423.1701 10715.2227 14659.667 15036.2379 10557.0758 37336.3394 116255138 SoxC Sulfur Sulfur Oxidation NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9059.371 11960.529 10254.2402 3985.7676 4302.2542 8376.429 30612.4046 6995.7574 77590.6857 5311.0864 21656.7764 8851.093 9473.6593 9473.6593 9016.4243 11713.5961 11441.3352 97589.2928 19937.7013 14206.2693 7710.59 9655.7729 17430.4898 10142.5649 9196.9598 9212.987 3301.9984 5928.2256 7048.7571 9792.7118 9302.8214 74058115 terc Metal Homeostasis Tellurium Detoxification Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 12948.5056 19644.7313 6845.9764 7870.2348 7683.2771 12417.7233 23175.7256 7819.9098 15201.6996 7027.0382 282490.7722 15303.0871 9813.3803 7847.6224 7297.1437 7297.1437 5041.0916 21738.3174 16042.8291 13727.5953 22001.7368 10147.6393 5422.7645 7782.367 15280.4444 7279.2915 42573.6559 13427.2696 21836.4114 7726.9765 10682.1511 17307.9849 12613.1084 11111.1891 223510876 mer Metal Homeostasis Mercury Detoxification Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 967595.9744 78708.6095 114629.6967 178051.143 291506.805 65987.1364 376698.3858 666771.0953 69006.2561 89322.7125 126917.2551 109685.7812 2669161.332 168097.7852 156195.0631 202503.3764 244697.7664 244697.7664 472547.3083 638201.8366 103478.762 231457.7622 125576.3313 148746.9354 99322.8653 104884.7891 153611.1757 106164.1688 220734.3115 188377.8766 165311.3516 71839.139 346342.5203 155252.6441 387962.2233 186995.6435 219541239 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 17302.9076 7275.4494 25402.9537 5704.4067 26181.9756 18628.1802 37212.6699 14921.2967 37373.8909 14990.4997 952463.7829 24545.823 20064.6328 22993.549 20827.8226 20827.8226 13372.8014 40975.3651 16836.4111 20787.503 49588.8165 23895.2236 31890.8303 38894.2825 24904.0182 24276.1432 57050.1768 36750.3667 33696.5658 15786.5795 47627.439 34547.4048 168803.6051 28247.6627 116197274 xylanase Carbon Cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5407.8221 7163.204 2528.1689 2547.7506 16222.5503 4577.721 15607.4352 72013.7908 4360.0781 4083.6362 4635.4234 11863.4407 5894.4185 6546.7595 2849.6834 3040.038 6078.3332 2721.8867 11239.1482 4094.199 7964.3601 2219.5847 4357.8406 3316.2079 3505.0948 55582.1385 324029611 cda Carbon Cycling Carbon degradation Starch Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 167244.7679 17210.7982 10601.6046 10204.1813 5865.9372 13574.645 12458.8118 7657.6098 23729.7327 26870.8037 20637.2566 171323.4206 12626.5173 32103.0362 41484.3991 12797.606 12797.606 11873.6009 24128.2555 29784.1431 25083.7307 21305.3368 7688.1038 57737.7005 11534.5691 27825.767 22238.8136 29157.1416 18073.1179 17808.4841 11552.5554 16487.3578 21419.8853 23022.5111 26722.5049 40253074 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5091.619 10116.5884 23767.1333 8582.6432 6246.8225 93058.8721 4810.6467 7368.0425 6231.9549 6231.9549 3901.5164 4386.402 223983462 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 19536.5946 6977.5484 5795.974 17802.5371 6433.648 3742.5298 6131.7668 4575.1098 6897.9286 9055.6605 5406.2204 180289.9729 8882.4917 11318.4661 9768.5186 12180.0799 12180.0799 6241.5255 16610.972 9205.1084 6803.4645 12242.3181 7211.9664 4145.1133 5099.1682 12888.2411 3125.5691 21449.7119 11053.9169 13805.1225 3514.1281 6980.069 7560.5126 4921.1478 14881.3911 371909423 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4587.5539 5316.3679 11649.2597 3055.0637 3133.8197 4964.9807 4192.7987 7579.3052 3900.7721 13094.317 5273.561 2762.5976 3894.8865 7681.2821 386385025 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 43982.5761 8561.7058 15233.5171 37542.4101 21379.7753 11675.3559 13970.2812 20408.3147 251274.8149 18937.7735 13260.2723 292842.7481 16574.842 19398.6115 16171.1096 11667.5733 11667.5733 10528.6715 24263.1487 15919.4796 15563.7511 24520.0351 12611.7409 9685.2238 15295.3516 24809.3305 7114.9815 52926.0938 18649.5234 26817.6874 6156.6886 11968.798 10956.4101 7235.0815 18924.5387 62003523 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26297.7358 49040.6564 36581.3794 27667.885 9345.9576 24112.7095 38320.6803 8014.4109 20488.3594 22494.9264 14233.8077 547386.1383 32210.5159 29848.7529 16093.6033 33693.1788 33693.1788 17193.4407 35626.4183 20987.4114 38695.6725 42946.1363 37241.7702 19040.6903 12367.5398 35310.0929 42426.5482 43482.756 40663.9789 36747.9424 12842.3086 16955.7701 16749.7439 99424.497 43369.1146 319414029 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 101837.925 37646.3463 40464.4415 14542.4137 35211.1614 6958.576 42964.1506 79713.6402 50560.7008 101148.3523 131055.5511 114908.6155 1294693.3568 141405.6845 467708.9753 60789.6198 109345.1235 109345.1235 67253.1872 162245.4874 51739.1936 103273.2311 136880.3303 23587.4748 33635.4281 82346.2071 97244.6428 87838.2151 192374.6414 98689.7243 142248.96 67522.5355 99224.4694 158191.5225 60753.1578 218493.081 223986886 amyA Carbon Cycling Carbon degradation Starch Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 20256.5699 5922.2189 31973.4921 6993.0449 39101.6713 9181.9537 8333.9206 5908.8872 8143.4013 12218.7419 85859.3331 7598.7351 5058.5282 96614.5143 24109.4768 24109.4768 9557.8826 24993.2397 8265.9812 8889.8211 40541.5675 6128.4904 8709.1932 11572.6922 13750.2073 6901.1969 35624.7926 9382.4868 15184.2525 5115.754 15894.0877 13482.1339 8401.0416 101071.5919 55978100 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 29279.5728 20804.3829 25798.8917 17763.2771 8583.4174 14425.6798 63572.6802 82284.6165 21037.6291 21758.9457 24643.714 1299392.603 24256.3542 25490.0047 78919.3376 18482.4773 18482.4773 14806.0066 43313.9462 19697.6948 21865.6392 58436.4156 16772.9204 12791.8298 17899.6915 163117.2468 17389.6077 55622.3723 21190.4071 59157.2364 13845.5994 29870.2532 19338.367 13222.939 39670.5288 422314103 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17972.6791 9159.9079 15127.2633 33534.3191 7984.4366 8467.3948 48395.3789 16532.9211 14735.2436 5678.547 345572.2339 15670.3111 11755.6473 8238.0834 5503.6306 5503.6306 6498.7751 13187.104 11646.2036 15048.6009 11991.9378 75215.6348 5922.4496 6495.2943 18858.2153 6658.1128 25075.0416 8063.1759 15284.7599 7279.0196 7502.8915 8429.4861 9851.0911 17291.0248 356642533 dsrB Sulfur sulfite reduction NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 29511.449 19843.2997 21481.9591 47160.0447 241387.8483 27689.4625 17007.0047 22078.7382 34171.9199 15024.5926 590130.5564 28298.7715 68497.2519 93901.1603 19462.4988 19462.4988 20051.457 55963.4876 69034.8413 87870.1311 38566.7767 32230.3537 57631.9237 21434.014 35191.9012 28735.6471 80542.1356 129906.7694 44593.74 20656.7847 27468.6314 28393.3958 22092.1644 48750.0618 320127769 dsra Sulfur sulfite reduction NA Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 10277.9108 85852.9416 9583.0533 7931.332 8972.4084 9614.8388 7366.0361 10416.6354 9373.4982 9968.8788 7308.4814 219577.991 11036.1083 14693.5271 6910.7834 6463.7933 6463.7933 6581.7564 23579.9975 12976.229 9757.7913 34191.3573 14348.7221 7485.6719 8984.806 12799.3371 5317.6898 25303.0475 10716.295 14341.6765 4482.2148 6906.7879 13123.2793 6719.7552 19385.1145 170692416 arylest Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 153025.6435 5840.4001 9379.2301 12866.7277 7087.2916 22916.3244 223790.0297 81623.6968 14192.3717 59340.734 25712.0907 331680.3883 45280.832 25196.004 17386.5957 17125.3008 17125.3008 15534.2679 31599.8371 24091.3806 16162.7894 26358.712 8107.1643 10658.2106 11824.4496 21817.3999 95369.3774 132274.1232 33810.4447 45628.245 119779.2892 18275.9051 13425.9982 27890.3958 12528.3786 8517644 soxY Sulfur Sulfur Oxidation NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 34531.7532 17529.2949 8527.1931 25523.5397 8639.8193 17339.7791 130765.5964 9419.3257 12289.962 22430.5118 21046.0239 293734.0437 30842.6164 19220.5018 13721.7366 15921.468 15921.468 36156.9062 37496.4728 24708.3487 21335.1219 35142.428 31545.0667 23538.4335 11841.6781 33152.3684 39507.6879 41943.7982 19452.0315 46946.5362 16371.2773 13813.999 13854.4611 25371.5488 26506.3221 380682713 cysI Sulfur Other NA Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 76880.7509 26237.4472 39842.931 171631.0834 73963.5041 20617.0654 23748.9019 60287.3009 32966.8927 37659.3023 81301.1677 55013.898 1279417.364 50890.2593 108884.1131 49330.3705 29385.6979 29385.6979 241553.6906 87348.4017 43299.2613 40278.8507 115456.2747 43897.4747 30738.3656 29192.509 66711.3733 30607.1193 151550.1299 60201.7889 57537.2081 32799.8799 50866.3966 62488.2599 30231.2896 74910.0369 371760819 ppk Phosphorus Polyphosphate synthesis NA Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 6483.4555 59009.9497 15231.6128 2502.053 6615.9063 3096.3156 3545.8375 4894.036 110786.1153 4405.528 8131.6099 9669.7074 6317.4357 6317.4357 5423.9891 11240.7971 11238.4453 5435.8699 2350.1012 9972.9155 18701.7538 4820.221 14539.3843 13516.965 12418.9699 5562.0647 4289.0458 7627.0825 5246.6471 121302629 linb Organic Remediation Pesticides related compound NA Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 22790.638 20979.9098 13734.7253 9935.7109 4811.5893 9234.2511 6035.4941 217027.7099 7823.58 228006.0963 4774.7944 8224.9729 18916.8612 15239.4615 15239.4615 8278.8162 21802.3331 4016.9735 5528.1342 10194.525 7080.7309 15829.9419 5550.3458 13686.1895 16366.7912 11482.186 10433.4585 10390.1106 3376.3723 5303.1729 9283.5341 7324.0437 4991.4964 189306742 endochitinase Carbon Cycling Carbon degradation Chitin Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 3889.2531 2229.7081 15046.9285 8389.2604 8376.4449 8376.4449 5638.7411 5081.1504 5112.0842 3883.8975 4400.8888 4437.7171 256688145 amyA Carbon Cycling Carbon degradation Starch Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 6480.4559 8588.9025 6677.0576 14435.8363 5985.3964 5140.362 9164.1035 3301.7494 6436.5335 9177.2841 11932.6944 181093.8872 11494.1858 13277.6106 14903.5594 8582.0744 8582.0744 4847.9765 8566.7911 8132.5542 8537.7373 7279.6371 5042.8513 12460.2524 7726.4919 13900.6511 4106.3426 18434.0007 14573.0673 9967.2609 6264.0776 9682.967 9764.8802 11521.4942 5901.2953 258655033 amyA Carbon Cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 26803.7472 7192.9987 11073.8389 16963.7699 4072.1699 50053.617 7694.7862 13469.0124 18876.9543 17109.461 329533.6659 21006.9496 17834.1626 19836.5813 18352.8425 18352.8425 9462.9575 32185.6405 15024.3277 22643.8423 16107.6258 12396.2939 13197.6859 16295.4384 25405.579 17966.883 52182.1857 26042.5316 28478.2021 12539.4814 27243.6779 21041.7465 11179.0104 28008.8627 83634171 nosz Nitrogen Denitrification NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 5927.0544 7944.2346 8883.4516 9433.172 163834.9394 7826.9012 5702.5663 5786.051 4148.9969 77745.3357 6448.6676 4716.1499 6236.4166 3254.2762 3254.2762 3359.871 7566.8987 5988.5089 5692.1054 9100.0029 6543.5582 12291.3655 3112.5007 7548.4054 65121.0674 7837.2244 10982.5531 3075.5497 3958.8311 5741.2748 3294.7204 4374.0268 145613786 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 35019.0016 31012.5953 14986.2763 40291.2921 22796.1854 28076.2753 88379.394 5148.5602 45334.3359 256691.329 24565.4248 529129.6377 55965.5813 52130.5744 39925.5435 50162.7837 50162.7837 95768.982 60287.3885 22661.2623 13948.165 43448.311 69574.1141 48756.0002 24987.5097 58035.6149 16217.101 78624.6168 904845.719 46179.0026 30948.3496 21356.0452 64086.3376 15881.0138 19714.5357 251771950 mer Metal Homeostasis Mercury Detoxification Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 25191.5982 15751.789 27933.3367 26096.2617 49081.5611 7776.6626 20574.1919 24810.1085 12359.4659 28716.9215 28011.5883 34578.8059 614195.3047 34589.9591 33642.9528 278557.2655 15387.1698 15387.1698 25720.6373 48266.0469 30772.7175 41606.4809 147792.9574 42285.055 20988.7712 17341.5379 40566.0099 13890.2693 54750.2367 20788.8327 47536.3903 14434.7841 33530.8774 20642.0516 16847.5151 36247.0529 46307850 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4644.9536 4324.2822 20850.8538 43230.2798 24124.033 8459.2878 2734.6919 68699.5093 5845.9948 21067.47 6148.0797 2448.7238 2448.7238 15493.1349 19826.8494 4692.547 43100.2039 23505.9626 69909.6733 3007.5299 13355.9067 35013.6975 15390.3367 6889.7138 7597.7121 4746.102 10770.3159 3414.374 6541.9109 55978089 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12710.4692 7506.0476 8094.3601 6406.7048 9441.4644 3640.1582 7582.9599 6663.0862 4469.0467 175790.7274 9507.7498 9544.1354 4074.0355 5110.2691 5110.2691 6951.6869 12145.0706 8848.4921 7923.3342 11383.6403 22039.1166 5281.2256 5295.0124 15289.3621 7728.5767 18515.756 12937.5351 13772.6484 4961.1645 7537.0042 9579.5413 6366.4969 15105.6164 378594350 ppx Phosphorus Polyphosphate degradation NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 38928.7467 14562.3553 20678.2802 22920.4187 7673.2724 16909.4573 18382.5407 10576.8915 22275.2047 16750.8533 26085.7255 411896.4775 69237.0644 23354.6568 52770.8029 22442.8422 22442.8422 20657.3387 40590.1646 20341.6093 22055.9899 65140.0424 30062.9652 16323.5329 15078.2757 31212.8878 17347.5139 44268.9558 31806.6687 26058.1967 12658.3053 38375.7448 26273.451 14105.7791 25916.8392 353189299 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 15166.335 30027.6755 9023.2857 19083.8255 43476.7149 6639.3934 11953.5025 12196.8804 39126.0225 27781.276 10769.1711 13168.325 131290.4001 17430.0906 21812.7203 71934.7174 20472.9746 20472.9746 23745.7859 19515.5721 12738.0709 13786.5898 14021.7802 17828.2565 28363.2746 22919.7738 25005.4436 21588.1721 39691.9764 11599.4706 17117.7668 34845.8139 10846.6483 13515.8485 58978.8559 55610.5 406701699 nagg Organic Remediation Aromatics Aromatic carboxylic acid Trichosporon asahii var. asahii CBS 8904 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon;species:Trichosporon asahii; 7342.4932 4050.0694 25600.7563 5242.8586 2794.9352 12613.0114 6671.3312 5864.0936 4145.6461 68555.363 5449.3339 3518.0574 4174.8338 4174.8338 3039.2334 11465.5996 17344.8856 5036.5879 4494.9337 3159.2704 3380.1448 7128.3498 2186.8882 13190.017 5417.4814 9695.0133 2836.1219 3482.606 6682.7083 4820.97 11642.9893 192764398 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8298.9145 467172.8845 6703.8249 4025.4375 3142.4499 3471.2187 31323.7289 11667.3618 2076.0709 3301.6637 6300.589 1754.0132 8683.5083 375301669 dsra Sulfur sulfite reduction NA Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 21027.4606 6291.0121 5006.9726 22580.4768 5499.0812 18835.8532 6941.4317 9566.0291 15240.9708 15401.6969 27512.0114 686374.3853 13741.1489 14275.0049 32401.9507 23501.4803 23501.4803 11756.0561 16141.8463 15225.7459 27950.5687 15980.3141 13557.5966 8813.8875 6798.9933 22726.1597 8012.2726 31498.8683 16806.0618 19185.4576 10083.027 14135.273 11459.582 6304.0401 16883.101 99030445 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4603.0797 26194.4793 8009.3863 7370.4676 55483.6099 4712.1612 4439.38 12754.2911 8751.7403 6147.6066 7418.0637 16697.5444 6618.7956 6618.7956 19182.2403 7730.2548 5691.2731 4430.9303 2679.2681 4570.4608 7354.4068 6607.4883 13980.5791 5386.0974 11743.3147 4187.2652 6217.9433 7174.0128 7319.728 149808813 nosz Nitrogen Denitrification NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 34892.7486 62814.5304 235647.0529 34331.0422 39060.2539 34978.4821 134443.5173 32541.1105 33205.664 75340.7802 23346.9381 1399132.2331 33878.0897 54130.2685 60196.1725 49655.2808 49655.2808 33325.8731 45169.8297 30588.3953 147969.3865 141570.039 35522.391 57198.4581 30010.4 381289.268 147474.7684 71248.0837 114314.9423 46288.7294 38213.1293 26524.213 28107.7803 62507.5195 80825.0481 183219094 terc Metal Homeostasis Tellurium Detoxification Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 9655.115 21954.4973 60100.1782 13810.3826 19816.4263 34103.1631 29596.2916 7882.5166 20081.9557 12157.4971 30141.6974 355933.4759 15886.9426 28012.0245 12744.8378 11667.2819 11667.2819 9885.3969 19745.9414 20776.3543 14448.5983 30214.6252 11861.2299 10766.625 34701.524 30959.1259 12495.8376 122207.1798 20401.7223 22260.9824 11053.2121 14631.2706 17564.2972 8190.1149 23130.1045 66801871 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5977.579 5070.2238 8436.2089 3065.2469 2813.8293 2771.2085 168615.018 10553.3385 3198.506 8983.3345 3960.1774 7385.6788 18147.3031 4889.1067 2702.8146 2525.5217 2621.3766 12114.8858 148254103 alkk Organic Remediation Others NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6068.1487 4943.8875 3576.1278 4345.9243 7195.9627 2259.8751 65378.0843 3805.8543 3209.6817 6206.321 1839.4356 1839.4356 3299.421 8907.488 7680.9924 14755.8566 13296.5433 11250.5117 4379.0696 3209.4893 7097.9062 2832.1233 11505.7549 7166.3234 8159.6525 3766.5341 4223.0025 3899.0574 3635.9997 12147.2875 13872675 alkb Organic Remediation Other Hydrocarbons NA Prauserella rugosa superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Prauserella; 38410.0763 77500.8792 33613.4653 46908.0852 27819.278 15458.0071 45663.4427 40737.1221 20340.2114 45745.0947 46978.6096 38761.6279 1059538.1544 50970.736 66146.6024 54618.6529 34891.2345 34891.2345 32708.2519 58087.6261 49669.5067 84242.2537 67801.1837 56448.877 23321.6847 42143.0518 40383.4613 35105.131 18837.351 23251.829 51852.5561 38792.9114 45174.1548 31664.1307 28134.4294 49679.8252 372986372 cmci Organic Remediation Aromatics Other aromatics Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 56622.0201 5445.8091 6088.9183 5756.4424 3109.7796 5128.3859 7344.1905 5446.7179 83914.7585 10640.4501 75439.8189 4373.5833 3307.1625 3307.1625 6156.71 13708.705 11297.8215 29803.2741 12216.6803 6591.2015 5172.666 5518.1279 10828.8144 4105.4737 160810.4776 19626.3183 11330.0804 3769.8351 8388.1862 7638.7168 5121.7624 12201.2579 170945736 phenol_oxidase Carbon Cycling Carbon degradation Lignin Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 5960.9235 13536.9186 3327.8545 2997.8536 3880.1151 4604.1732 6340.7679 10095.9156 5298.6692 2752.0334 2992.9739 388566410 tfda Organic Remediation Aromatics Chlorinated aromatics Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 17516.1472 13449.0913 4339.7198 22897.7985 5083.4356 2817.0414 6882.6217 8069.3955 5124.4179 10996.8514 16434.1322 120164.6454 10405.7777 12910.3065 16366.1261 7900.428 7900.428 2580.0299 9060.929 10336.2233 27652.4482 6188.3149 4276.4244 5376.7586 7799.1486 9117.2293 5099.0856 13192.9225 20511.6288 15697.9433 4116.7925 7170.4841 9186.7262 4222.37 157373665 nitrilase Organic Remediation Aromatics Other aromatics Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 13415.9666 6284.746 13387.8167 22292.1401 4499.1688 9731.9012 7678.8261 7026.5282 10677.658 13769.169 4469.4385 297615.828 15890.933 13338.0769 10878.9103 5321.8353 5321.8353 8715.7393 21235.39 22722.482 12810.2977 15969.8267 15181.5155 6189.8343 7216.399 21175.1999 6776.2194 28410.3152 15470.0776 18937.5974 6891.1822 10501.6115 10957.2852 7323.1675 19867.9951 358752123 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 30753.9605 10358.4561 11940.6534 31437.9539 6756.9087 8498.7987 9060.2382 13039.8343 13484.4214 104542.263 83018.0598 12590.1126 18150.7574 17945.7399 17945.7399 3658.9438 19579.9733 11240.5813 7121.1042 15501.6291 13905.2653 7308.9683 35276.005 18479.9317 36311.7388 25111.349 14191.3843 17273.8581 5637.1627 13536.066 17372.3913 4272.7206 11236.0997 41394664 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 14881.0096 11101.5707 4970.3867 6092.5435 14592.802 7689.5355 8812.736 3718.6335 5822.5034 5168.8306 6230.4436 13349.4546 3671.9438 3671.9438 2989.7938 9172.7103 4772.3195 8114.6011 9329.3249 4104.4308 15350.4811 4837.7989 8295.7995 9239.7991 12955.1603 5397.6771 8789.9558 11450.7759 3892.7243 8074.5797 7669.0711 7002.2457 389577810 nifh Nitrogen Nitrogen fixation NA Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 6908.4762 4503.2485 2535.4542 3952.5897 5479.0218 3549.3586 3436.4189 92220.2363 3298.5864 4894.8284 5264.479 2070.3649 2070.3649 4711.9342 9490.2611 5532.3403 60074.7786 6978.2359 6757.9093 2362.9322 3485.2622 6582.062 2627.3859 11426.4764 8610.1009 3127.3976 4285.658 7029.2683 2730.2608 5400.4857 109290271 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4041.2463 2327.215 6521.0857 3185.1016 8106.5609 76621.8882 4704.2068 3701.5632 3473.2759 3473.2759 5277.1303 7049.5883 5643.989 6266.7988 17029.6364 3502.289 15486.2191 2701.5095 9730.858 5555.9641 6311.8167 3364.7274 3761.2477 3664.7245 2917.3863 359783427 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 15261.2321 5605.8358 54424.5334 6114.8925 32477.1827 2743.372 11105.7167 29209.3503 36169.843 705385.5807 37493.5988 66148.916 12732.6351 13877.6501 13877.6501 7270.1005 19088.0558 8380.8734 9991.7616 11228.77 29614.146 10704.6521 21179.5145 36380.4704 13208.4349 37619.3646 21396.6056 40502.3553 8932.0802 19242.8607 20987.0274 5463.3948 17664.3967 223470324 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3756.3232 3832.0434 4396.6966 4214.6353 6898.9245 14152.8787 2458767.5396 7490.5731 4180.2036 22301.4008 2506.3725 2506.3725 12199.1116 5447.9533 4071.9668 17980.1606 5113.4587 2848.3002 24232.2659 11566.555 4232.0308 47108.1227 1847.7307 4888.0241 6603.2113 8573.2002 302868850 rgl Carbon Cycling Carbon degradation Pectin Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 23524.9762 95728.2935 50307.6927 46972.0742 28541.8342 47097.4686 16943.2349 17140.1252 7910.9729 30560.4462 12699.7438 378528.6643 51727.0054 77576.1882 16963.5199 32820.0376 32820.0376 31749.9611 34033.9215 19009.1361 16890.6779 43469.8932 23929.3829 24214.921 16390.829 33829.9065 20282.9926 89147.9799 38006.4684 35974.2737 11295.7224 23667.6747 33059.231 13628.0603 17843.4353 112802752 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 6517.1958 4892.1082 4789.1609 3662.1291 2176.5528 2459.5426 13813.2142 9992.3281 9992.3281 9296.0989 4164.7753 2771.5701 7537.5559 3163.1065 3058.7753 304314490 dsra Sulfur sulfite reduction NA Methanothermobacter marburgensis str. Marburg superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter marburgensis; 6483.1379 7807.0241 5339.0545 4050.2546 7502.2747 12833.0482 3310.1285 437333.4617 5374.9146 4952.3187 2063.2326 2063.2326 3879.0016 16258.3291 5776.8735 5530.3214 8349.6073 10266.5492 3165.7843 4879.8713 11188.4987 3397.7927 13200.6899 6730.2543 3627.8596 4196.8194 5853.5878 4319.8269 8195.2509 76802027 rubisco Carbon Cycling Carbon fixation Calvin cycle Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 82428.321 16900.7592 25812.0327 43464.3721 176225.2294 20440.0114 151691.5527 25523.98 25498.4983 34349.4202 46002.3431 393293.3674 79757.2942 37088.9821 122283.5833 47452.0672 47452.0672 18243.2953 40792.2684 37814.1466 23535.3151 192369.7789 72604.9767 58747.5185 33915.1385 93787.3049 29935.4648 86296.9981 93351.5968 78094.5675 51384.8435 38113.8218 56539.8503 184358.0679 77243.4944 220907038 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 43137.0188 144919.8498 114501.5948 245511.4327 70619.5939 31172.5125 95418.9477 55004.7839 61269.0452 77178.8616 47470.1294 809875.4257 70508.5971 58938.029 82036.7153 114292.0108 114292.0108 39492.5959 84169.5804 63746.486 43136.1163 58150.7564 27864.8982 23924.1992 46391.2316 74877.2931 37087.7809 264458.3307 59691.8797 93386.4152 35130.4262 56917.6186 47881.9892 44626.0045 59432.5049 81299925 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 48570.9774 23612.6384 30399.383 64643.0307 124603.3054 17402.0678 87537.4394 83986.622 81788.2838 74674.862 39514.4533 40023.7082 958722.9354 78048.806 77916.2299 45459.7754 40065.6465 40065.6465 26635.6563 70498.2006 37335.464 41857.3942 73860.5357 71952.1161 25685.9961 35719.046 101585.9383 31732.7505 120535.9557 39186.4647 49742.8137 28101.4429 61222.6495 39367.3088 24796.1389 84361.5241 193224926 SoxB Sulfur Sulfur Oxidation NA Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 148641.1751 31674.0845 133314.2438 84490.4502 53495.7322 47250.48 64561.405 92782.0461 68348.6817 107031.2205 125859.7368 81680.0586 1454280.7305 94917.4133 181882.5347 100464.7382 81459.136 81459.136 59772.9573 134952.8231 71414.1943 240326.8808 128460.5583 104226.9116 63220.1225 87449.4618 84351.6341 56766.5883 172529.6069 100908.4647 98873.5432 63375.4773 65657.6105 104602.5308 55163.2615 131602.0372 42524234 nrfa Nitrogen Dissimilatory N reduction NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 9143.9451 18218.7316 17729.7559 81830.0238 98364.5268 5611.5383 32046.146 218275.1794 9425.5355 15650.8793 12921.8098 375210.571 22971.5707 25171.2499 38565.3698 19256.0725 19256.0725 37123.0878 17279.0722 19646.2238 7279.5164 10239.2067 4136.4945 4868.0397 37166.6143 47609.7657 8346.8914 34811.3685 32648.0076 29340.1654 13338.3114 18283.708 22950.634 5106.0945 9985.5759 239832026 TIM Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 18620.1328 9818.304 6189.41 98525.2146 4915.5434 4232.1751 4027.8889 6328.6811 10646.1265 3926.8449 99115.589 8045.7957 5895.2189 5529.687 4898.0442 4898.0442 6021.3863 14637.7838 10253.4867 18298.1268 11596.4878 5981.9306 8514.456 31532.7613 11594.3863 19233.5378 47089.6973 11623.6455 9165.2383 5837.7292 10501.5505 7294.3688 7082.3296 12292.598 41410334 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 8496.4541 11438.5948 20341.8636 3310.1471 7047.8628 3479.2992 8050.3876 13881.1457 4629.1824 123933.2699 7322.7718 7609.6136 6054.9728 4799.7249 4799.7249 6887.8515 10928.891 8921.5903 7537.5355 14219.5607 4597.9812 6152.6485 14226.2897 3415.0159 17574.6009 14218.5053 17130.2672 4506.7541 7143.9951 6054.1877 4480.8032 7127.9539 257790482 ppx Phosphorus Polyphosphate degradation NA Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 231052.2595 13174.2858 58008.4841 41814.8903 30124.9769 20081.5443 42431.4782 74382.7566 67847.6752 62642.4312 95081.357 100025.1128 3089250.7188 101716.7013 156750.4394 150467.4622 123236.4376 123236.4376 110790.0648 179034.6292 75521.2376 180642.3537 258224.4219 73914.3475 125243.7793 84015.7132 168107.4201 70344.2732 209728.5108 184572.0664 119763.2561 85717.7953 118618.1909 95040.2476 52874.7208 207798.8998 334090051 linb Organic Remediation Pesticides related compound NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 3665.2383 2051.7388 7923.3221 2267.1108 3773.8303 8105.2049 3256.9165 89082.5554 6308.4087 5179.624 9017.4083 9017.4083 21472.9612 3514.9315 3536.6796 95957.4679 3885.1693 2543.5945 8701.0144 2014.4093 5497.0385 12564.4573 1762.7909 41124.1402 3451.7936 3220.198 83592243 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 35326.617 3860441.6429 1161029.8155 9746.6592 18426.24 2629.2016 3212.6683 8437.0433 5016.7866 65334.9389 3629.6691 18549.1709 32855.1174 32855.1174 4063.0922 3354.274 3232.4416 2631.1619 3824.6671 1924.3876 14582.0008 2463.9638 848482.5573 306415532 pcpe Organic Remediation Herbicides related compound NA Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 6855.7032 6269.3316 9746.5716 9059.0349 4987.4176 5707.0568 7612.1584 9727.0529 3596.602 228713.608 8430.8707 8856.7802 6759.9072 3142.818 3142.818 7277.4437 9432.9471 9044.7379 12256.2972 11313.8193 9587.1729 4391.6557 4548.7767 11925.9236 3216.5004 18217.4756 9962.5392 14674.3215 5955.4729 5488.0889 6878.7672 4375.6079 14262.9721 166028472 ppk Phosphorus Polyphosphate synthesis NA Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 14949.1837 9604.3777 24312.0703 12143.5201 3948.2974 39168.5932 2544.9776 9651.4237 7929.4368 7243.734 149278.6749 8597.7263 11006.0002 12439.7372 12281.4704 12281.4704 5646.7386 21185.0101 9464.8489 7514.444 22095.0318 9954.0276 41239.1258 4581.8966 14368.9491 4222.2254 14500.9149 6103.3552 15396.5052 6691.0168 5847.0124 8065.96 3976.8957 9861.1617 375329256 pgk Carbon Cycling Carbon fixation Calvin cycle Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 12029.3776 87708.6523 9150.3395 85829.2306 532287.5169 6191.4929 29896.526 184005.2013 14115.2964 22396.8403 21026.349 16787.0557 360662.4901 29614.6559 22424.3983 150959.4449 15455.4605 15455.4605 15700.2805 180631.0164 27781.545 17188.7659 31010.9247 22861.2769 7555.5328 11874.2341 52598.6566 239600.0721 47092.5837 22478.794 50288.9341 22375.9251 46117.367 32111.0684 21596.9367 21965.7585 160932642 amyA Carbon Cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 57021.7636 12928.7174 39546.5073 12474.9762 25784.5357 37303.6815 18379.8714 30224.1393 7820.8779 35270.4088 25641.3056 28146.3722 311716.6483 34617.3704 77901.0815 52715.7083 39479.8729 39479.8729 14914.7918 52900.7328 14937.4579 33441.8378 35675.5313 26100.8911 12729.4258 38547.2178 34062.2014 42391.4327 103557.8096 29224.8889 31745.4768 20484.1362 22191.7057 9637.5405 192280.7863 45726.6739 377531760 urec Nitrogen Ammonification NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 35405.3525 14292.1711 5537.632 5813.0028 26334.5644 7196.5083 33411.9066 7292.0532 42276.9791 13541.9501 20435.6176 77521.7683 137707.9326 12548.0716 19867.3099 21042.9085 14188.5824 14188.5824 11455.3745 25138.4108 14721.1335 21536.9392 16271.1551 14737.7615 12169.0042 15079.5633 27507.8448 9313.857 142510.9465 26140.4162 26640.942 8730.2712 20841.0705 20534.9678 7212.423 12334.002 145613179 protease_serine_fungi Carbon Cycling Carbon degradation protein Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 13136.4044 5386.9648 10522.1068 31185.9427 9515.43 2786.7105 4126.8174 18677.3374 18168.9164 160350.5898 15147.4656 9828.9312 19062.139 12311.7942 12311.7942 7431.8616 35959.8683 72371.2449 26485.979 25079.39855 28453.5416 20121.6938 29573.4848 81575.9227 3766.2144 13025.4399 18869.9069 114641.8987 372454795 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7215.0245 6584.5823 4260.9135 8236.7639 3478.8154 2844.6313 3039.2995 5060.9521 4623.8634 2780.3335 103925.5075 7060.3092 4823.3382 4771.3555 5154.7174 10218.5342 8209.1734 6929.3908 9574.7808 7713.7268 3373.2375 4068.6888 7312.6585 3140.993 11500.5703 8520.8376 3479.1966 4527.8596 7140.4662 3534.4621 11934.2975 383772618 alkk Organic Remediation Others NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22789.9905 23739.4491 23488.5432 16110.2496 45676.9943 34285.2126 33113.9633 10535.7015 17793.5659 10329.884 14158.1611 1036963.8151 10959.151 19125.6875 79621.1256 50394.9524 50394.9524 12144.0242 12149.5115 17563.3592 14368.1924 13364.2611 13789.7892 13846.5902 24435.4973 27190.8849 10657.6447 20760.6319 17077.0677 38184.6665 8412.0613 9349.381 17487.2245 15349.8097 11750.2985 383083208 amyA Carbon Cycling Carbon degradation Starch Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 38959.3157 5028.9757 3883.1346 87362.4681 4829.7256 6119.2471 13818.0924 8795.9018 8795.9018 3549.5311 6688.4275 12955.5016 4646.4159 11805.992 2218.27 11368.2644 8014.741 14858.2103 2722.8619 5966.9847 7358.2735 254425153 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6199.9418 2813.8745 6707.6654 4399.81 8993.4031 149128053 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 8611.5185 11199.6306 5918.8991 10790.6651 8028.0436 5434.1045 10989.1926 9146.7675 12538.3792 14607.962 14831.9362 189399.9796 15218.4995 21935.9103 13679.9215 9091.6644 9091.6644 5597.4481 12319.3804 6274.7698 8811.5468 15937.4716 9736.069 4997.4776 10413.3652 17689.1277 67248.2426 34961.9819 12183.7866 17423.9934 6754.0478 12367.4568 12008.9834 4762.1023 8632.0956 297624301 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 7504.3558 34804.0836 283797.9177 14292.2227 2783.8158 5969.6128 2564.8028 79965.6242 8941.5008 4555.9248 9778.9582 9778.9582 7723.3347 5905.736 8576.4861 109165.4399 3700.9081 12592.173 6087.435 6095.5412 2908.5051 11375.2798 2894.7982 5266.2884 304438646 amyA Carbon Cycling Carbon degradation Starch Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 3886.4633 55446.7328 5113.4686 8774.7968 15759.6431 2130.8738 67226.5239 4969.9324 11802.714 11802.714 11908.69 4410.3441 2318.2624 7434.1817 10147.5804 4981.8104 5748.4622 5655.1893 3919.6079 169624056 glucoamylase Carbon Cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 4308.2876 3436.358 4073.1747 3239.6341 4285.5717 96453.1525 8565.049 4318.1713 8359.1344 4934.8025 3840.6138 13251.8945 2425.8309 7118.648 4671.9548 4208.3086 2543.9931 3198.0096 88699293 pgk Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 6677.633 8953.789 19219.421 5086.9779 7363.8711 8292.5283 7325.2387 12284.809 15011.5092 256107.1041 7006.3132 8361.1444 11122.9518 13954.5384 13954.5384 5264.9691 16353.0506 24945.1413 5836.9945 6972.7702 4601.3812 3958.2689 23566.733 15482.0101 5554.1163 23101.6985 14114.212 24280.4313 4995.5898 157063.1019 33528.8701 7034.8088 7063.3897 392727337 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 5332.0236 13248.7557 11247.1465 20450.2474 12687.427 2818.6199 3344.4608 18165.952 3103.1581 4839.4331 4464.6719 4449.6017 10106.0116 10106.0116 6738.7826 11575.1771 6836.634 3672.5144 88573.3664 4894.1682 2150.4374 5388.5941 9666.3533 4511.9492 16776.8155 7744.379 5836.2017 6510.6012 7872.1035 4783.8806 3603.0759 9442.8577 337277901 dehh Organic Remediation Chlorinated solvents NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 171624.3982 29596.7145 77765.622 129979.6873 70373.5027 38137.7094 80504.7928 399710.7116 74553.0522 137306.3166 275230.5764 169459.8402 3045347.7876 145432.7067 143022.3673 157154.5661 165061.1968 165061.1968 77627.3993 116304.9904 91327.7906 120762.6881 147260.175 156949.1055 93499.6912 95413.2023 336906.2476 280421.2265 234162.4062 174574.3677 140482.7765 167717.1598 74629.3085 112538.0357 489942.934 184036.2392 223470359 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14113.8732 11181.1601 7714.1484 43822.3017 10950.8512 39812.6944 5485.7006 8099.9389 9686.5166 5546.9223 127844.1587 9577.6009 17739.2139 7826.1007 7059.5292 7059.5292 9980.7277 19132.7618 16751.0161 12492.1803 13017.8786 15754.3727 7524.8903 10603.8072 18597.4015 14686.6847 23236.6013 18972.3262 15693.3973 9292.4769 9834.8263 8857.682 7664.0512 10443.5772 219795536 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 6407.3853 5579.6107 1802.601 4315.4583 117169.8804 3601.335 6202.7927 58615.626 5082.4394 5492.8466 7153.6938 7153.6938 4386.3025 11652.303 6032.3889 4992.7842 4719.2003 6858.3793 2430.3557 12590.455 5862.4142 5886.3636 2117.6244 8461.4432 14221.6281 2588.158 5610.7538 295105901 badh Organic Remediation Aromatics Other aromatics Gordonibacter pamelaeae 7-10-1-b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 11728.6435 18183.1397 9653.9859 10804.4335 10592.0269 2513.6274 8189.8597 7412.69 7664.1896 128847.4626 12593.4988 38099.2562 30156.003 9449.1565 9449.1565 5164.4609 18001.4584 8840.5522 35844.5411 12608.9949 15174.3888 7566.9506 9807.5266 5247.0271 14679.128 11099.8208 14256.4863 5644.6358 10974.4731 8065.9261 11749.5225 18688.1979 337270300 cmci Organic Remediation Aromatics Other aromatics Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 4211.614 2553.4608 3011.0529 2310.8793 3348.5918 4776.368 10579.9533 61166.8714 5799.8167 4635.9724 4163.561 4163.561 9189.5203 7064.1496 5651.3627 9442.5195 3613.0671 5439.8753 3773.3448 7815.3574 5361.0701 7643.0482 4557.3387 19087.115 5511.4987 2584.6589 8086.5006 108765844 mer Metal Homeostasis Mercury Detoxification Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 218410.8184 38203.886 19969.925 14008.9779 12249.9907 16683.5567 18259.1574 20407.7027 96852.9462 43971.6268 67011.395 435994.6806 113512.5509 485879.7195 55133.8262 19113.7227 19113.7227 21371.0101 39945.5432 25146.8973 37896.2544 88751.3264 98303.174 32329.801 26269.9051 30673.1484 23473.7699 77705.7351 49022.9282 42082.3187 15447.2772 24525.0288 41301.149 14683.2897 137245.4927 158316512 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 46132.2894 13633.8887 12086.0395 17899.2287 17174.2905 8787.328 13825.9122 29279.9683 46880.2308 390670.4522 12603.2844 21618.6389 27151.4779 43524.2225 43524.2225 17132.0914 94677.3314 18922.131 42675.1385 24382.0663 31891.4083 13168.42 14424.4007 18164.9668 21857.4199 77527.7796 16083.3484 36983.2147 11936.2153 31410.077 26743.2409 15650.1181 32577.7949 111023819 dmsa Organic Remediation Others NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8012.3894 2474.9198 7854.5104 29956.2281 14551.0799 14551.0799 8782.3025 92627.2031 5779.7467 2228.5882 2324.0546 14151.951 27761.4389 14007.4243 319950505 glucoamylase Carbon Cycling Carbon degradation Starch Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 12094.2824 16323.1935 13448.5698 28010.8595 80304.9762 19996.9569 6058.8107 13881.9443 6105.0171 7421.4776 14687.4056 12177.0533 445794.673 17890.9132 58234.5425 67618.0303 28962.1473 28962.1473 5778.9977 44749.0273 16369.8149 13540.3698 6809.9005 11070.2568 10831.002 17662.6324 32964.5443 8482.2707 42443.6273 31996.7826 32657.659 8222.8032 13947.1428 11068.568 5826.1853 8506.0545 357008633 amie Organic Remediation Aromatics Other aromatics Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 4978.4743 10152.4002 4644.3198 2857.2216 2344.9985 23557.912 4512.4639 30448.3949 72555.3421 10513.375 7809.1554 2665.3508 2665.3508 3077.6743 11991.1023 6787.1354 6404.9613 9148.431 6694.1655 5105.5175 3020.5217 6737.7144 2307.732 16913.2206 5186.0992 6658.0611 2574.371 5855.5523 16213.1736 2460.5458 6221.3034 38505862 arsc Metal Homeostasis Arsenic Detoxification Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 27435.0959 4547.5454 6825.8508 8980.6312 5827.9132 7379.8002 11255.1387 6199.0945 11715.5992 11834.6069 4240.0362 252174.2358 10120.3239 13151.5251 11040.0601 6511.4674 6511.4674 6779.7498 11990.4761 11223.6498 10306.7726 8466.9842 23373.7631 5515.057 7436.9213 45885.5807 6141.3481 21125.4234 14763.668 11816.483 5903.4575 6321.3793 7201.7149 4546.0673 10434.428 247543146 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 18496.7507 7582.5444 56871.6816 4627.2932 5279.8716 9954.3209 4650.8187 4720.3557 9513.3511 5586.0168 93577.5074 15570.7579 6540.7752 10163.9384 6518.9617 6518.9617 13156.6218 11198.2755 9203.4346 4705.057 15168.5924 40695.4307 8750.4701 9403.4946 13324.9569 16814.4549 37095.4442 18151.7739 15480.0906 10830.4877 12634.2063 10149.202 16687.9222 13016.6305 91777684 PRK Carbon Cycling Carbon fixation Calvin cycle Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 155293.0646 9853.0707 15738.6531 12212.2601 11592.6506 11184.5698 11494.9814 11136.5909 232231.2064 69764.3711 12004.0581 33002.9705 7342.1298 7342.1298 8574.8645 23905.4953 14340.3539 9268.2722 20044.633 10266.0208 11837.9705 12385.4849 16237.3718 7035.572 28020.6416 14926.7693 12480.2112 6488.6 8793.4883 7572.9079 5766.8483 26970.8155 147886254 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 17726.3897 11169.6061 12502.8805 9256.8102 21177.6849 6486.6328 15170.1763 46339.2601 14115.5973 14780.2664 8485.8272 359171.8921 112566.4957 23802.7139 19021.5387 7507.4005 7507.4005 12660.2246 25427.8514 21550.9521 35050.0607 65697.6078 15245.8445 10324.8006 10716.0836 103752.3924 9545.7606 32676.9824 28761.825 39877.9801 12198.6543 15555.4704 18140.4784 8379.5392 15703.737 113526719 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 14381.5372 6923.6003 14625.2068 75977.7361 5532.932 6985.5652 7536.0908 8136.9445 13696.4343 6300.5049 151538.7299 11392.7569 13296.3654 12823.3087 15095.8926 15095.8926 5277.1957 631697.551 6267.3035 38471.7168 11701.9862 10665.0507 4819.4542 14926.6674 20216.1345 6866.6285 24079.0995 12319.5594 46010.0056 5933.7103 10022.3509 9830.5444 5598.623 88571.2298 90954557 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 103938.7919 40875.9332 26420.0187 9410.6078 10707.0611 10282.8834 13712.1242 33494.0132 16483.5985 17739.4462 18010.0696 32065.4798 357789.8985 24543.6247 51485.7535 38656.2475 18157.4362 18157.4362 36200.8737 52165.3034 39807.891 83668.929 32139.772 43124.2569 21474.3594 21897.9359 90768.4578 39502.4418 45917.4859 18519.1683 34149.9941 11933.5451 34030.6303 32260.1522 17997.1871 17025.9753 197714255 urec Nitrogen Ammonification NA Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 16951.6864 2128.2049 4521.0953 4505.7899 3438.2458 68449.8839 4581.7791 16103.431 11010.216 11010.216 3488.2095 5004.7669 7069.1777 10300.1122 19772.0797 4175.2329 3746.8114 2468.6783 11037.3422 386801221 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 12797.5526 23126.8619 7383.9532 6767.9293 11936.4718 14872.7787 7715.013 3634.5911 28437.6681 12432.6023 7068.8837 275396.841 16867.3431 14631.6674 9103.0528 6313.6656 6313.6656 12551.3082 39462.5368 21466.7497 14990.6862 16563.9521 14115.1905 5765.0239 12400.92 32326.9496 10896.0522 36265.6634 10247.8042 19710.8497 7842.4997 11678.8704 19748.4278 15910.1064 21854.2374 71383880 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4537.165 2530.0962 2530.0962 6536.7257 43280.2898 3462.5861 2931.3183 178469188 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 59317.5401 29175.6036 81560.9545 31379.4588 110842.8658 20686.5989 12426.2712 33951.6445 25438.2401 37336.8877 61602.0971 58037.4226 469026.3735 32530.4861 56672.0173 108179.9531 45487.2992 45487.2992 31745.6972 75934.0861 50918.8324 48010.3754 38382.4601 24323.2766 18693.4711 24027.0278 44474.848 22752.4068 74130.5774 98791.3287 45506.4742 55723.2821 26666.1381 38393.2869 18290.954 153671.7386 229591217 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 34308.4005 6211.8204 6209.6081 19095.979 13957.3998 15994.9846 19020.5327 6485.9133 9453.0665 10386.0414 13855.0903 189835.2725 35723.147 15915.483 31410.0011 46080.2509 46080.2509 25074.902 24010.9425 15506.345 58257.8726 69322.6498 12189.0461 13612.8795 14018.7058 19477.1845 15406.2092 37331.7367 16625.1301 22397.6363 11147.9528 16436.0971 24265.0203 69967.3269 23275.6119 76056987 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30948.7427 21013.6643 87950.7787 42231.1135 84975.3629 31073.6662 12745.7076 22487.9228 5816.8204 15717.6634 32593.9889 18244.1537 1049347.2028 37111.1789 20051.9484 36613.1006 31866.1131 31866.1131 19029.4807 37989.4333 24994.6869 23622.3042 26552.2817 29051.4348 39897.9424 27453.6413 66982.8607 16550.0075 89577.3879 55789.4201 105435.2756 37952.3004 27740.4081 30478.3888 15042.2824 25504.1354 177840389 RgaE Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10494.7425 51239.727 4836.1596 6028.8276 4368.3984 21703.9021 8778.3146 14077.5914 107099.4599 8716.3565 7067.0574 27343.0547 8476.2204 8476.2204 10972.9723 32964.4937 21902.486 7959.0323 14078.7411 6772.7815 6607.6642 9925.9549 17047.4374 6222.5101 71164.592 18109.4893 21220.5915 8166.497 7471.9154 10228.1364 7011.636 10229.5751 146406836 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 42679.1238 115500.5686 10642.8508 89888.4576 13496.6267 95785.2593 24668.7693 66466.905 48764.0564 98105.2717 54801.103 736497.1544 50905.6983 23523.2889 53680.7668 49178.9535 49178.9535 15334.4717 33345.6611 36349.9496 36415.1158 31059.874 32701.537 16107.1511 25916.4888 39564.1382 112863.3222 64607.9459 57192.4363 92199.2932 27010.2329 34310.9438 61055.0695 18374.6704 39890.8746 357538769 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus rhamnosus R0011 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 90607.5277 25421.8899 65543.6854 19838.8258 50199.6553 6787.293 22445.8506 25432.992 69680.8196 45542.0487 45803.0333 53670.2572 571058.1267 52948.5279 59216.4897 82348.0492 65985.1783 65985.1783 21486.5406 63504.0636 32991.1646 41963.948 113102.868 49655.381 35668.4416 51814.2944 200348.284 47284.7395 88061.44 88181.3533 51737.4847 24552.5772 29589.3995 65164.9086 24184.8838 86327.4361 52548525 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos17A3 superkingdom:Archaea; 4873.3523 4031.7006 3489.4705 3195.2905 70782.5668 3713.9887 3391.7529 7849.6395 4459.5996 5121.5287 7331.2285 5266.3587 8811.2431 3413.1295 5978.0293 2229.5255 3049.298 4596.0398 2257.5046 6505.2596 2854060 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus sp. KK-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 56120.9211 19125.1548 7708.9532 10958.8858 13818.3872 9855.6505 8823.1006 23556.8072 11531.0705 14615.338 24625.7117 199576.8909 23986.9807 22734.0876 7833.9311 16272.7707 16272.7707 7192.1754 27580.4118 13727.1401 9313.5935 18876.7629 24596.3611 11014.7976 17894.1975 17998.7644 7605.0315 26952.7005 12456.5867 19172.2831 4452.6078 11101.3327 12049.4817 16357.5448 24545.6408 58041829 xlnd Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 6155.5182 13707.4295 4983.3452 10960.8657 2287.3001 3652.2425 29291.9474 21884.688 672340.4094 8165.006 13781.4574 39867.21075 3942.1827 24507.5463 11997.7872 37584.0305 82050.8642 14625.7935 8088.4808 24934.2751 16043.2165 11315.70385 13170.15695 3484.36795 6185.4909 15641.9378 55859.3748 227069631 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 6843.6455 5732.6149 8142.248 4278.0009 3397.7921 4118.5319 82963.8857 5498.0667 5007.1625 6470.7245 6470.7245 3155.8663 7722.8333 4721.1653 7232.9792 7476.6488 5141.0005 7044.3647 3530.3105 13522.6547 12126.1875 27036.6031 4617.5684 11896.6179 3679.451 3148.1791 375100650 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 7098.6784 2863.7456 5641.2475 6750.8812 3061.5355 119410.8994 6609.3133 3375.2079 5533.6132 2195.3214 2195.3214 5299.5215 12846.6398 5184.0767 9627.6733 8484.5212 5742.3231 3688.0739 2380.8447 8138.8853 2813.7553 11294.592 3845.9182 8840.8094 4276.0059 3275.9193 5478.3689 4295.7746 11279.0701 163662725 trze Organic Remediation Herbicides related compound NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 39528.3109 38976.9841 16081.6199 34099.2795 4806.4622 179821.6852 13901.7068 14077.2618 10318.8666 52456.6317 19294.8179 767743.6876 42926.2683 19276.6387 21547.2065 24458.3728 24458.3728 18549.9505 28712.4118 14829.6693 17267.2058 19130.436 130449.7627 23859.6881 13128.3438 24873.5101 17234.3942 42020.3956 33629.6455 33290.4887 11549.1952 14823.9094 14877.3878 17344.0229 20261.8961 49240193 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 56373.399 13374.9025 12091.1872 528702.865 15146.7508 14094.3601 228343.9566 5589.578 13751.6566 12080.8935 8269.087 448924.9283 14061.0302 17263.0979 8386.4094 6680.4987 6680.4987 10437.5769 18781.0384 18222.3491 24640.6955 32858.8104 24860.4849 70604.5283 9247.1468 175083.5928 127123.7782 29463.6928 137647.0878 20721.6738 9128.0956 11539.4 13138.9111 132110.9843 584155.4414 76056991 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6753.9699 2768.106 3937.2247 13663.6227 10023.8984 73580.9221 9207.2652 3562.6107 3562.6107 5434.1259 4133.5213 6182.0877 4231.915 5963.3669 6534.6583 5759.3307 4697.4952 10955.9786 5491.6482 5899.97 4409.9946 3975.3444 5611.9242 4164.8337 5448.3102 209959072 terc Metal Homeostasis Tellurium Detoxification Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 3992.6208 55455.4825 3035.8154 3043.239 4519.6065 45213.5164 4535.8232 2093.0701 2093.0701 3052.6391 6631.6649 4681.4651 3715.1359 3818.1423 5004.2078 2043.3704 2928.0172 85058228 arsc Metal Homeostasis Arsenic Detoxification Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 58986.5075 5404.5387 6273.6908 7193.8878 2817.1391 3547.9189 6125.3752 4940.1896 10767.1317 7051.0008 101475.7684 4904.4076 21580.3666 5983.4631 4754.1461 4754.1461 6213.9303 7218.2489 6583.317 26843.0225 18383.1787 12619.3379 16151.7929 3654.3508 6552.4456 6305.9208 11666.5784 4856.8957 15976.1583 3963.2861 11343.4354 6210.7866 5395.6172 5139555 pcag Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 73570.4659 25408.2092 8766.048 32372.5563 7769.4943 8165.8777 16227.9762 11917.0853 12014.5109 46235.0925 87024.8099 569854.2618 31020.1315 41320.0871 53859.6678 49761.6313 49761.6313 58322.169 57938.1329 25709.3586 93690.5698 118412.756 65374.2755 22479.2505 35611.7147 24476.0002 155784.8109 73869.3312 84656.1352 67201.2544 27580.7052 30670.1891 39297.9459 21911.2217 40492.4173 82719311 mer Metal Homeostasis Mercury Detoxification Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 20330.3977 15360.6893 22105.1536 23341.5335 6941.4131 18514.0057 18993.6855 11830.29 17743.9116 19158.5788 9589.7612 451629.2936 24403.6778 22584.9339 13490.0625 9576.0195 9576.0195 14737.7579 20855.8706 16133.2587 20182.6931 20736.6499 27210.1457 7634.3728 9949.5778 22591.0574 8780.4715 36586.5092 8815.9544 23246.8953 9945.3613 10937.4069 12940.1192 12365.4908 28427.535 20799543 silicon_transporter Metal Homeostasis Silicon Transport NA 7158.8471 6529.0497 5044.1492 4104.54335 4506.4985 5177.6765 4799.8474 18920.5892 4971.4182 137971.0781 6794.4354 5370.9428 5677.9406 5677.9406 5285.8659 16501.174 10739.379 12408.4108 11692.7695 9923.0582 3826.1312 4033.2114 6563.5581 3878.3278 16182.8447 10127.9001 8583.1408 4495.5471 6690.4957 6273.0823 5217.6188 9404.6773 319418520 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 44157.5433 10431.3529 14753.796 18901.3057 34501.2682 28674.3602 13487.622 10070.0792 14980.6718 67765.7526 12097.1925 403526.6253 26408.3814 19505.4992 15694.5909 10012.4322 10012.4322 16072.244 34033.8563 29793.3547 21873.7462 26788.2984 23697.1527 14265.336 13439.7396 22628.4307 16324.8789 49599.3867 22262.6217 23829.6879 19911.7604 30567.9698 30680.7369 16212.7459 26102.64 365266016 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 11907.5317 11743.244 2891.0413 5070.6132 5392.8144 5605.5801 7049.8584 470250.2973 5039.8848 7237.72 6547.2715 6449.0663 6449.0663 3825.5773 92780.1839 8999.0077 6727.7035 11303.6258 10347.1196 4724.0354 5698.3665 10369.0983 11195.0024 26134.845 26561.0998 14976.0163 8751.9565 8941.7559 10175.052 17108.2434 11217.5448 221633372 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 25423.4078 16137.7641 12249.7598 8824.8664 3584.6305 6292.1334 5030.7876 24353.7579 27778.3022 12662.967 196284.0239 14657.1021 9739.3285 34157.2694 7757.3968 7757.3968 25018.2812 20877.8957 6830.4113 38328.9722 16900.5604 6743.3084 6658.7845 10853.6704 10263.654 35193.0287 20812.5187 51923.8069 19962.0031 5754.1295 9966.5102 9660.745 20523.8099 11695.9932 48926964 narg Nitrogen Denitrification NA Halomonas maura superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 10333.4719 14314.5007 6476.4103 5451.7989 3567.5004 15340.1447 6211.0511 39641.3557 19921.7113 389481.9974 36609.8475 19196.4822 3937.4088 3937.4088 4178.8247 17484.5422 6226.1683 8199.454 28501.0928 7586.828 35733.3792 10776.0185 12128.3527 21718.0402 12620.9686 10141.5367 4713.2779 26167.2549 15220.6088 6052.0294 17762.4944 87283080 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4687.7735 4259.1496 12537.3242 76872.712 4732.0492 9298.6946 3746.6543 3746.6543 2947.2233 6463.5463 7664.5438 218675774 aps_apra Sulfur adenylylsulfate reductase NA gamma proteobacterium symbiont of Robbea sp. 1 SB-2008 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 31193.005 14281.4093 5505.8308 685909.4019 3962.5083 3092.9296 16199.9091 13618.5077 7936.2955 119466.185 7296.6347 6715.0251 3679.5162 3679.5162 12583.4447 7522.6566 31133.6567 7839.3462 65693.3155 10413.4041 3486.2596 7293.0273 11476.7835 134122.9602 45814.3013 65369.0108 2668.1766 5461.1175 4214.3439 3652.7926 53785.8535 169759169 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4307.2243 7387.2638 3114.4995 4989.9982 65998.1726 6318.073 2677.3721 5648.1631 4968.7541 4526.2984 5327.1591 2439.8243 2560.1777 11217.3514 3108.4715 2704.1773 4399.9356 46371039 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 32561.4664 6014.9377 7350.192 22259.1972 4497.4817 27746.1015 9160.9061 8300.2729 7869.7227 15470.1933 5594.7357 188524.7872 13120.6137 10902.9964 13029.1947 5824.73 5824.73 6651.6409 12585.4532 10989.2161 95606.8419 10271.6496 29961.8181 7669.0943 6277.9807 17865.9748 4741.5816 21511.2484 12257.5598 28213.0967 11098.2721 16344.2663 9023.5408 5369.1147 23605.3668 53803762 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 5223.3844 14211.649 2507.7304 2442.1083 3783.004 45112.794 164210.7851 10104.3811 6701.9483 3893.1671 3893.1671 2945.1413 13542.9626 8459.5308 9094.1288 6544.4035 4134.6776 7030.7664 7783.9914 2767.9799 19808.3059 5753.6329 8753.7228 4514.1961 3373.4031 16263.1626 5576.6132 159186182 xyla Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 60378.9997 20934.5887 87372.0938 48562.7244 5713.5589 22886.3864 18735.8128 16230.1533 14084.1914 67061.8003 76721.8911 249230.5815 33028.1542 23564.9283 36102.748 18402.5891 18402.5891 42733.5252 53673.724 31706.1644 40464.5348 129407.2955 39568.5041 32337.5015 47108.722 24692.348 38240.4776 65850.8395 42779.4139 40324.809 88046.0548 29133.2043 54177.8583 35831.4963 39777.1926 296014816 amyA Carbon Cycling Carbon degradation Starch Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 11414.5425 2565.867 3008.4176 2372.0793 4163.954 24768.2717 10402.9735 8002.8843 7693.2274 3015.5365 3015.5365 14389.3805 4384.8861 3564.8529 4728.7155 15015.7418 3353.6406 8343.343 7967.9775 5654.848 2246.9325 4355.1282 3214.0322 8188.8952 340346789 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 48046.7354 8859.4165 23413.2428 60707.9219 20702.9208 7541.4148 15027.9161 12679.4125 27529.7468 25573.5216 39589.5182 436981.7551 54328.2727 219236.1538 47925.2373 32555.1227 32555.1227 17310.3077 40666.027 17254.5062 95644.1305 19495.8452 16557.6787 12270.5639 34887.438 24959.3182 14752.1466 48611.9906 49658.2332 37511.9192 10980.799 127321.9664 29216.7297 11273.4838 16504.4088 44829089 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4441.9846 5324.9354 21750.2517 9551.7913 7362.1028 5401.5228 4396.9149 2988.998 139889.576 10207.3784 6832.5036 15029.55 7440.404 7440.404 3341.3667 12139.4333 10713.5324 2422.0113 3978.3049 16047.5925 3028.8367 10745.0113 6078.1557 9666.3533 3153.2324 6052.8413 14284.576 2350.19 353243325 rgl Carbon Cycling Carbon degradation Pectin Piriformospora indica DSM 11827 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 8429.6097 17955.944 38431.4472 19173.5102 24641.5114 8916.4529 4904.6791 12890.0556 6000.3836 6492.6055 10328.1083 16644.1033 134110.6338 16559.29 13069.1378 13761.3787 11280.0192 11280.0192 4247.5729 19571.2659 21564.5798 4056.1039 6082.8349 9461.8774 6306.5433 8722.5216 29742.5549 9945.8899 31345.6129 24347.7108 26753.945 9417.0142 11963.1687 6766.5732 7662.8362 5958.0308 260574362 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 304347.4394 16045.698 25702.3974 13048.8209 35935.56 6119.3516 346034.3656 28892.8367 144995.4295 18235.3131 74725.3193 35680.4579 334933.6325 26307.6104 30395.3548 46715.1298 26519.7548 26519.7548 141746.1946 31567.277 22876.9893 18143.6737 28164.3287 20819.7643 21362.3461 34156.9765 45979.9054 20656.2196 38401.7002 19227.32 29147.6175 11934.4966 29389.7632 19828.7382 20308.2977 200358.5369 363897419 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. ACB7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium; 4776.861 4275.6262 4735.5083 4756.288 2286.6239 4703.5863 6768.4985 171703.1785 7117.8825 5595.3552 4254.4626 4796.3017 11444.5245 7561.58 5206.9534 10308.4016 8131.3683 4252.6257 5009.3717 9259.8039 3800.9948 786080.098 7706.4507 13448.3009 3001.5707 6610.6391 4927.4116 2870.3288 7453.0837 167361723 mer Metal Homeostasis Mercury Detoxification Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6584.7959 1601788.0427 16547.3988 3694.2771 2230.399 3000.9953 54750.1586 4002.4751 3998.137 10910.717 3496.477 11933.2474 2193.904 9725.7107 3443.1197 3366.9706 3073.7091 4579.8192 7499.6399 324316624 amyA Carbon Cycling Carbon degradation Starch Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 9301.9573 21182.2285 12113.5767 8050.8001 2480.4511 2972.0286 3359.2871 1835.7543 1835.7543 8847.473 4117.1046 1974.4898 3089.047 374374998 b_lactamase Virulence Antibiotic resistance Degradation Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 384087.8471 9521.6772 4743.3725 3859.9973 5295.1742 500046.6398 3682.4972 3569.7101 3569.7101 7626.809 5635.3259 7069.4581 2264.5159 3476.4217 10497.0275 3514.3064 13491.8361 13687.1967 7676.6206 3038.2221 5252.3534 4008.5567 3931.7382 5730.7371 373107111 pula Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 15654.4398 12583.15 10036.8923 15798.1279 16456.0028 5089.6711 14836.1133 15390.5747 9865.6791 21284.0621 20232.0661 21130.1597 432509.4754 24442.1131 20911.196 19586.0895 10927.1238 10927.1238 10425.4992 25256.7295 18968.7194 27236.534 30633.6103 19567.5036 8715.2303 11747.6016 25444.4211 14126.5958 31776.9978 12260.732 29591.5485 9017.1354 12300.7542 14845.0748 7285.0173 22272.4841 310762832 ppk Phosphorus Polyphosphate synthesis NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 639529.8066 51121.1525 249753.5981 1687671.656 777609.5337 254269.612 313703.5384 577269.2249 712062.4827 303166.7078 373029.4466 238766.8066 16063551.1165 374274.4771 451845.0566 654593.5219 434208.1483 434208.1483 297101.6058 395789.2278 218614.0103 366329.4211 627457.0162 495896.5013 244346.3414 221040.5667 256977.2998 252612.0345 884797.3548 369197.8175 381384.5825 182294.6237 209751.7918 314158.2717 260964.2394 316238.0423 283796982 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 5221.5391 17512.319 2485.7363 5846.5297 3902.6287 4763.2526 4875.1755 68049.4534 8016.6868 5210.6419 31716.9434 31716.9434 5343.6295 13815.3252 7321.1233 35202.2206 11044.7359 9279.6792 4734.9833 4324.3504 7721.6506 18907.7743 17682.3754 9161.2161 3102.6261 8223.7379 6476.7933 3582.2746 10415.0602 320149878 terc Metal Homeostasis Tellurium Detoxification Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 59713.6001 10354.7359 18733.0746 6836.7917 23455.2291 2790.5663 6873.7056 3475.1599 59615.7134 8793.2489 3746.0775 24330.5587 11356.492 6502.2853 12700.0107 3044.0747 4087.0698 12700.452 4379.8127 5838.5542 148530.0597 3802.3611 4474.2923 27210.5745 104966.8655 289530597 alkk Organic Remediation Others NA Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 19916.2381 12584.1762 165073.0644 27375.8318 8688.3888 14364.6825 16728.8396 14301.9153 53239.7333 19033.3694 26675.5675 291518.8025 25383.061 17706.203 62101.8043 22863.8489 22863.8489 12498.043 48809.5473 19880.6451 36538.876 24584.1837 1574337.6067 13577.9656 62907.1348 21489.3568 14366.1663 58290.1376 81468.8297 31186.3761 17039.4318 14606.7058 19211.5996 14177.345 43245.3818 391317829 amyA Carbon Cycling Carbon degradation Starch Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 20317.5124 6100.2281 7354.984 2553.8043 14707.054 4726.9437 36263.0636 8105.495 8569.9359 2171.3322 2171.3322 2535.372 91606.4849 24256.0886 4952.9115 5049.568 3562.2921 6179.2723 9098.5918 2542.8264 19288.4783 11144.2048 9101.6922 3544.4611 4276.7312 4237.4932 2858.1532 6555.8656 26278676 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7328.5746 6315.2699 2978.0468 4255.0411 3155.4775 30549.9264 5783.0737 74525.8262 6132.2032 12730.5248 6740.781 8720.9897 8720.9897 4485.7797 15174.1389 5640.275 4889.1437 5787.5711 6323.9162 4298.1768 4731.1972 6052.8982 5615.3627 11172.4753 9102.2212 9367.9408 14013.8221 3827.5268 10319.561 7826.4351 189206824 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 12330.7751 5353.5866 3549.9857 6027.3333 3760.8938 79006.1157 6893.2405 7368.2946 10725.6448 4169.341 4169.341 5294.7813 8030.0705 7329.2013 5060.2417 5779.0285 3207.0967 3059.3621 9374.3046 3030.9074 13132.5495 7057.3709 7257.005 4253.4338 4907.9872 18181.8344 3785.2713 8299.8246 288961173 pgk Carbon Cycling Carbon fixation Calvin cycle Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 24750.8599 14699.2682 87571.2502 28970.4882 13927.5259 7938.5234 26120.4285 11504.5645 29256.9341 19293.0724 18679.281 322851.9174 28051.8162 18882.5499 29629.2925 41283.1075 41283.1075 33189.4223 31636.7576 11833.4547 15591.3791 36839.219 21887.3168 9049.8615 12068.4221 83506.8682 104585.8783 33474.9576 28405.4144 30310.0129 8167.6725 30784.4127 14002.6627 7741.4134 706198.1366 151362235 nitro Organic Remediation Others NA Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 64104.2127 17903.6258 29026.2584 39439.0419 43106.2092 144337.5587 54271.4219 42924.0112 16588.2583 42502.0123 43802.4049 34901.0675 729643.39 225372.1132 39579.2078 48672.5747 75433.2792 75433.2792 55162.3291 75672.498 35709.3276 60060.3865 70016.617 75492.8519 50899.1797 40712.376 62634.8084 37143.7106 128778.6075 146570.3266 97170.3683 80109.0831 46642.4459 55998.3294 70383.2581 56049.1915 170749958 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 11756.964 4812.6604 2491.5357 6651.1306 66575.3771 5113.2678 5592.3321 6201.6543 6201.6543 6871.2968 5863.4319 6493.5999 2962.2922 3881.7207 25698.655 3791.9634 18431.398 10638.8832 7582.4865 2779.336 4609.37 7832.2519 2880.3506 5711.9101 218439569 nitro Organic Remediation Others NA Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7068.6118 6547.1119 6813.4244 4638.3537 6959.1186 6959.1186 3033.255 22793.8329 3359.3646 4731.9032 10760.5039 3920.9094 3159.7378 11557.6875 331014318 amyA Carbon Cycling Carbon degradation Starch Pseudomonas syringae pv. lachrymans str. M302278 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 3883.3557 13936.9321 26715.6324 3687.4603 4317.3751 4317.3751 86165.2527 2844.6335 4795.6582 4832.5175 158314787 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 16992.2985 24428.845 12094.6582 14895.8743 8973.1303 17274.1648 9534.4245 5619.9515 7666.069 13418.5013 7307.778 230043.5469 70562.7428 13555.0601 22964.3007 22964.3007 10996.7195 21725.1057 19843.4403 22440.6538 25918.3407 25630.6618 8854.1772 7433.7795 21160.9939 7210.4952 39099.8484 16179.2764 19411.1901 9254.7744 8651.1388 11066.4739 8891.2512 24685.8045 7839375 urec Nitrogen Ammonification NA Prochlorococcus marinus superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7088.7817 2074.8956 7728.7184 4311.7931 1887.9135 1887.9135 2724.5212 6936.6071 4241.0011 11340.2504 4534.6353 5224.7074 2750.8311 2285.9717 5013.663 2129.8326 4205.5033 5255.9359 2018.8446 3050.1323 2864.4339 223469554 rubisco Carbon Cycling Carbon fixation Calvin cycle marine magnetite-containing magnetic spirillum MMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospira; 7085.8043 11077.8498 3549.2941 9022.3217 3458.5908 82011.8466 39155.8863 120787.6375 9687.0964 5904.2255 7524.5593 29510.4639 29510.4639 4649.5825 14914.0146 8173.2542 6254.9409 108890.8953 7592.0151 4277.5363 9243.3376 13561.2291 11037.7884 32587.6048 63690.9337 9254.9377 4443.9767 7600.234 6472.0913 5242.2056 40621.0621 118588878 FBPase Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 22193.8203 27031.7142 11194.2754 8570.7804 23739.5321 11606.1249 9541.1908 11039.4005 12635.414 12727.611 19321.8522 31988.8922 455438.9229 73185.3642 18184.2608 18513.8903 12372.9171 12372.9171 8286.7266 21392.1441 10664.2607 9941.4303 14460.4946 12853.9911 37347.5816 9583.5186 38422.6481 18971.939 8338.4329 11866.7236 22936.0074 8573.8868 31207.09 14710.2217 5899.5394 23288.4603 170943984 endochitinase Carbon Cycling Carbon degradation Chitin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 15498.0462 17192.9718 12892.483 5736.5931 12989.0025 60134.7705 15945.5947 21482.7958 25466.8404 27437.7071 109829.4627 18736.7255 25883.8273 29269.7 24849.3706 24849.3706 13371.812 25883.5867 16038.131 9374.5457 16765.7841 24524.6214 10542.1324 53689.0192 51302.019 8234.9813 44474.5512 35654.5293 28691.2303 24743.5698 27941.2165 23419.768 83231.512 6404.0847 217331421 aoxb Metal Homeostasis Arsenic Detoxification Ochrobactrum tritici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 6735.0259 11008.2198 2718.7029 1947.577 5612.4059 4751.4956 4344.5287 78896.0493 5003.0756 2879.5942 8505.753 2582.94595 2582.94595 6204.4511 5045.71385 7146.2317 8048.7439 8193.45675 2090.0423 3304.4778 2182.5283 9482.8007 6002.15135 7014.54315 2631.3497 3120.1506 3478.9867 2288.0497 10760.553 158315918 pcpb Organic Remediation Herbicides related compound NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 23467.7378 8353.969 7412.2358 7249.8009 7555.4389 7371.4328 8415.5918 10735.1756 5219.6368 237127.5312 10957.6157 16424.0764 12211.1054 4878.9688 4878.9688 8789.6449 24999.0881 8096.8732 9902.2725 214299.0177 14999.3881 5819.0139 11322.0588 11472.4935 12085.6387 29490.437 9594.185 13281.3791 7549.0332 9028.7476 29119.5217 6242.7742 10277.5757 224519944 rgl Carbon Cycling Carbon degradation Pectin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 119806.8697 31001.2198 43223.3534 26620.4935 39118.5701 15405.7338 24823.7709 48947.2497 42808.8009 30172.2124 64970.5051 48363.1279 707002.3296 46669.6361 55872.9036 89318.2104 44490.9868 44490.9868 41933.2678 55050.226 38040.4779 36733.2842 139571.9752 57972.0745 23296.791 30901.774 41703.0271 18916.7423 59647.5482 35256.3932 47729.2217 21778.207 33189.0383 64341.2666 12294.5213 154583.5656 292821337 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus F0309 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 13224.8687 1078101.7743 16507.5405 19311.3123 19988.5547 10811.759 273695.9289 8064.6608 16043.252 17632.0533 12737.3985 422166.3073 12599.5331 28579.8044 17749.5526 20088.2279 20088.2279 11455.3913 28838.8442 16301.4038 13060.0309 39090.5519 14898.5433 19415.7145 17187.0783 17187.577 23795.9079 39358.7778 17584.6003 23511.5343 19084.4746 20346.8772 15836.1997 10426.3337 20479.0845 126435676 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 265224.1106 8363.1385 8692.4767 29487.3167 8146.8587 3968.9998 7387.0276 8509.6521 7699.0242 4626.041 137505.7023 8405.3141 8689.1819 9145.1342 5462.1461 5462.1461 3987.4946 14593.9412 7660.413 6318.1857 272390.1761 7318.5688 3679.5287 5829.4124 15799.1042 4650.1754 25364.5497 17221.6176 14219.7658 7534.4265 83415.5272 6390.3832 5135.3069 7534.9858 220924329 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 180932.9213 560334.6279 197087.5655 58643.3421 12970.4589 25927.936 44075.3078 46199.2062 46184.8336 66854.6518 64193.0338 535235.3463 38101.2786 103545.9187 118445.961 147947.268 147947.268 113077.2467 137380.7206 43969.0705 73442.6663 338175.1859 114727.4143 53123.4499 82679.2625 51500.9686 120398.9369 206610.0031 66037.9191 120415.0443 31096.4506 55153.7235 79456.2029 43300.9108 231735.8235 339495438 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 3975.1823 8313.2096 4509.8541 2331.2794 5336.9136 4246.2512 72795.8748 4030.3847 8579.4914 2531.5535 2531.5535 4156.4749 8278.2521 6951.523 6521.9294 3070.0121 8167.1039 10787.2794 5789.2057 6814.304 2666.4829 4086.4996 3567.0159 2914.6395 269144316 terc Metal Homeostasis Tellurium Detoxification Neisseria cinerea ATCC 14685 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria cinerea; 4322.9023 4348.1128 5024.2198 3353.2406 4549.1939 7225.4352 3577.6037 136091.7436 7114.9474 7912.2785 47091.6373 53956.7859 53956.7859 5141.7552 14150.0293 9606.5971 6356.9084 13684.2472 5333.0485 2785.6002 19879.2079 13637.9447 4165.6091 19613.3535 7074.3951 11653.8223 4188.8338 6123.9037 7532.1153 3561.5987 7964.358 121605619 vana Carbon Cycling Carbon degradation Vanillin/Lignin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 52208.228 15716.4751 9248.0657 7001.1441 168856.6705 26648.1567 7545.889 27335.4368 21260.3322 20445.9993 101905.9425 60673.2489 10294.5331 19245.6021 71855.5382 71855.5382 9465.2796 44545.8216 6233.4846 14634.5406 50674.6788 179028.3623 15068.6297 14411.2475 24453.619 28380.9751 50478.1842 14738.6076 16942.1131 45623.0762 14876.9875 20296.3311 8244.8695 36322.695 255267507 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 10002.5433 6892.1819 18909.9048 3623.9935 5241.2172 3838.5934 3160.6259 83665.342 3965.882 8334.5929 29427.8224 4825.68 4825.68 4428.7823 27570.8653 6624.9095 2439.6935 5781.9443 84072.0759 10882.3158 5213.3628 11209.3022 2039.638 7139.9789 6260.3827 4290.779 294629964 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5623.5072 5706.4987 7251.9945 16930.7137 18490.1977 5856.7571 3558.294 5731.9379 7048.5704 69179.1805 4616.4782 9025.3051 4227.3752 8448.2949 8448.2949 6271.7696 6713.5209 6169.4114 7192.7097 72063.9081 5179.1834 106835.5894 4475.9383 8489.5126 7789.3341 10594.8876 5295.6407 8069.5658 2932.3863 4749.4755 6941.5214 6220.4687 8263.5887 388060792 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 00703Bmash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 18874.1798 12684.5231 20041.4733 23156.4651 18574.0988 6514.0464 21683.0952 19411.643 13262.5149 17852.6571 21263.4458 10108.7666 491160.3195 25934.2867 21962.9854 16699.4663 9781.6303 9781.6303 12966.0148 28568.1519 18429.9217 16820.3782 21703.5747 28469.9349 10267.3707 10195.6626 24239.1313 12668.0817 10862.2878 6853.4493 23974.2658 10607.5395 10915.4834 15225.7977 10644.6193 31644.7552 74038404 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9365.9464 8379.6334 4619.0793 8862.9052 4775.2552 4503.9841 10128.8244 2365.2925 8701.0911 49819.4562 8903.849 133639.3304 8113.2131 7094.4073 9328.5773 3984.347 3984.347 8377.4028 13776.9794 14135.007 7259.4247 11519.4674 12820.5885 5347.974 6427.3103 27937.75 17789.1006 89012.3171 19865.0376 20341.4986 5118.5354 8392.5288 10549.4431 6656.6394 11247.6553 71383720 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8831.227 9517.7264 19669.0077 5758.147 3434.7284 11316.1192 5692.5344 31514.7787 7696.1678 58366.4394 15113.9941 12920.2192 6906.119 6487.8163 6487.8163 5546.7307 14161.6404 9372.0729 8476.3306 144038.2779 266234.7759 10271.0796 17304.1907 9072.3253 6268.6882 16017.7057 9356.9646 12074.1264 4695.3033 9151.9772 20750.0844 4466.3792 8995.4151 73540662 TIM Carbon Cycling Carbon fixation Calvin cycle Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 420063.7218 138225.6444 278352.2338 338771.8191 162755.8996 41832.259 155650.6017 399046.734 160857.1271 147523.1342 145163.9494 180788.2834 6261129.0717 227900.5529 208828.7143 381267.4022 202526.7731 202526.7731 162156.5797 305885.7607 130103.27 274474.5002 394760.7061 353474.9599 182517.1453 130173.4798 493920.3147 139494.3468 608706.8864 92606.6557 250892.3573 191022.2753 140396.1327 166055.6976 223841.7255 346955.2926 169848689 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 55682.1162 28867.8329 15231.2139 67077.8844 29893.5089 30114.7857 15497.8945 16906.7616 10301.6655 9078.0825 19235.965 159416.3918 15043.3253 26617.0378 26110.2507 17607.2966 17607.2966 9404.4672 25593.3803 9223.3066 337352.0433 34828.6293 22218.2622 11132.2763 18127.8139 25454.2793 16114.8851 43337.7232 33229.0404 60407.7229 10777.6913 19711.2806 14251.5142 4778.1604 26456.8739 386854657 arsc Metal Homeostasis Arsenic Detoxification Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 20147.6211 16632.8016 5246.6178 8779.0195 4239.255 14187.021 4582.1381 114390.9866 12067.8485 18884.6826 120163.1909 30545.7999 9955.483 13665.6574 5603.2633 5603.2633 83961.7283 25500.7036 16756.6638 34432.6298 7545.7884 10708.9944 7790.4685 10739.5465 28762.8181 18463.0896 10240.2542 2827.8027 6065.2677 9211.3776 8531.4614 72197.672 334132849 xylj Organic Remediation Aromatics BTEX and related aromatics Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 21032.4326 40155.4591 5911.4948 9018.3945 12706.1994 9608.4547 13888.5333 6130.9293 11981.9095 383680.4786 9825.7747 24491.9103 35679.1672 12177.2978 12177.2978 14223.0777 14218.8409 11363.8006 12226.9282 57911.1645 9987.6722 20519.8425 15661.2787 24736.3042 12844.3605 35240.1108 59716.333 15441.6366 8529.269 9610.576 59185.2095 8667.554 16669.5049 312113381 dsrB Sulfur sulfite reduction NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 11718.1863 7720.3453 4785.6372 7422.3963 4960.0315 7151.7796 4920.8435 4278.5318 12831.0367 12576.8411 90712.2255 5868.0045 5606.344 114338.6313 29248.9446 29248.9446 8022.3842 15141.9582 11653.8567 18607.3545 13343.0147 19561.4068 7012.4581 14112.4475 43155.5144 6495.3628 41142.6984 15852.5454 9612.9355 6010.679 11005.2953 22890.1254 9671.2995 15995.8895 222148583 cysI Sulfur Other NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 7448.0201 5936.2177 26860.0377 4297.2782 10548.6146 7609.0294 392974.1112 134240.6994 5313.3612 6140.0729 4752.4689 2691.9734 2691.9734 5833.0496 9806.5362 6278.9604 6736.0608 7474.446 4690.3611 4307.8944 10539.2408 3471.8599 13017.4119 8954.4307 11270.734 3194.9018 4528.5439 6280.8043 3599.4233 8480.0033 170175815 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Thermotoga sp. RQ2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 17191.1427 12455.6193 12441.781 22730.7353 21053.0408 19934.1406 15720.5532 9708.8636 18676.0853 16159.6434 10083.4554 430604.4124 17119.9738 23104.4594 23247.9762 9951.113 9951.113 13251.0764 26963.9851 16439.9621 18953.2944 14927.3621 31711.9843 9399.8895 9406.0527 21365.0477 13627.9514 37010.4049 12843.9238 20946.9068 10382.6147 11901.3296 14435.676 8808.791 38081.1317 338533521 cysJ Sulfur Reduction NA Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 23403.9002 88537.0726 13566.4983 16767.3285 10065.7322 96943.4347 55564.8231 28281.9314 22054.4296 13126.4227 20605.4744 700668.8601 22376.893 13004.3498 59520.4352 33732.0318 33732.0318 17850.3114 46200.4931 94063.6621 97513.6087 72773.1032 50707.7038 162877.2272 28472.8046 39415.2474 12275.3491 37273.015 29709.8275 19426.7277 8020.096 39548.6998 34200.6765 9195.8618 31256.8117 261857091 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 36491.1944 29211.2319 17412.6765 18994.8782 10519.1704 23063.5782 80190.8059 27372.1779 16413.8654 13943.0983 19387.0303 208361.4372 13871.6827 19237.1337 14061.3461 20990.1246 20990.1246 13820.6727 36526.6303 11651.9802 26893.7982 33989.3586 90865.4847 18885.1793 38064.7824 17879.3838 11913.5802 35438.5681 22201.7034 23601.7941 14509.912 43267.4586 21251.7747 11296.7921 18545.3072 118030378 urec Nitrogen Ammonification NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 43414.3506 46774.9246 17405.8558 16244.7721 878167.5642 10634.141 38696.7596 20928.4112 25453.5958 35408.726 76862.3718 2220685.9576 30161.6851 77803.9043 27360.6822 63586.6009 63586.6009 24080.5903 100119.4166 167900.4422 48146.5105 57413.6993 38055.2338 32683.5136 24970.5143 54122.3598 46040.2557 85818.7829 39050.7472 59084.3126 24681.9224 76579.1353 109089.9485 23908.3988 65499.6042 37925044 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5931.9121 34490.7081 5033.677 17111.9391 10494.2212 5565.1768 3987.1762 91115.8147 4665.2877 6065.0525 5183.6388 3780.5433 3780.5433 11834.1184 13802.9741 4849.2088 5941.864 18804.9671 5540.5597 38558.4735 10682.3482 15620.4587 9614.089 3415.7207 7515.0636 3462.3356 16506247 nasa Nitrogen Assimilatory N reduction NA Vibrio sp. AEA-2001/8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 29756.5493 12604.1161 20581.1761 56964.6139 52981.4745 14137.0484 476482.6497 81685.229 34574.5547 45049.2518 67453.9013 27904.4067 966270.4757 39646.8095 53116.0682 37266.3938 21853.1796 21853.1796 23995.4332 53950.0154 38411.1371 56965.2897 95803.9052 45288.233 85913.3629 22338.5026 46251.6942 41235.9298 98034.0185 39716.2583 48919.8173 23780.1447 375605.2059 28871.0446 21438.6154 234670.1583 344338403 nifh Nitrogen Nitrogen fixation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 12800.8216 2124.3982 3620.5217 4164.3394 5294.2844 3722.9729 25442.3382 4841.899 4841.899 4225.245 14324.3721 5330.6593 9396.8775 6104.5426 4468.0402 20187.7782 14349.7873 11350.8965 5154.237 4646.6567 2558.9046 4197.7977 9779.8504 3275.8536 13789.0819 157084650 cueo Metal Homeostasis Copper Detoxification Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8074.9361 6114.0214 17651.7063 3828.7224 4296.9184 13352.7885 7179.4449 8870.4273 5069.7905 147163.8415 9597.6052 4283.2261 4279.5742 4279.5742 7613.9234 17358.9475 11837.1965 7388.1528 73208.0648 7222.9176 5693.2425 5449.6245 13682.8624 5798.1159 27318.4347 5023.5493 15479.6363 5111.5947 7225.4118 6835.2382 4706.5345 6917.4348 84711534 nifh Nitrogen Nitrogen fixation NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 14358.2846 7951.58 5391.2891 2199.3468 5360.658 4053.7474 4434.295 8102.0598 9893.2773 9744.3338 11149.9102 11149.9102 2795.84 7822.6236 5723.7222 8766.7379 5041.3346 5362.408 13447.7234 5607.2844 8594.0961 3653.4847 4103.1186 4395.9023 2338.2661 30664.7127 323528694 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6411.437 4010.1974 2918.5671 3264.1038 20020.9693 9040.0436 4151.791 92146.797 8521.1807 8356.552 6322.5566 2944.136 2944.136 7835.4975 204257.772 6775.1743 4580.9606 5494.6956 5195.9883 3242.3495 2896.6374 8131.7335 3044.9682 20632.2976 8457.8229 4278.3042 5185.4549 3970.9807 3247.7201 9557.51 110834398 dehh109 Organic Remediation Chlorinated solvents NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 6001.8574 1972.9957 27709.152 6323.0619 11153.8586 6954.9485 4289.2792 2875.4886 2875.4886 3019.6334 13273.8787 4849.3714 11212.9834 5474.5326 8158.5336 2494.4463 21694.9358 5299.6991 16894.0065 21376.6414 5370.9649 6996.7859 1899.7377 3630.3383 8007.164 2497.5115 5338.0361 291613464 arsc Metal Homeostasis Arsenic Detoxification Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 7707.6437 4609.7852 6869.9414 32626.0219 7931.0613 5633.456 15355.6447 2553.3584 5786.6777 11063.047 8689.018 164570.0334 12766.6487 10938.6014 8625.5684 6929.9037 6929.9037 5196.0909 12541.4751 19262.7608 9340.5917 19630.7274 8447.2038 4448.2523 6711.4926 21064.6661 6935.1227 31834.7097 22045.4387 17609.8932 9494.9145 6953.8842 7472.7953 4192.4401 11762.186 392437334 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 5579.3538 4951.4002 80131.5798 3689.0117 3646.6731 3088.4917 6701.9389 5530.92 7127.0261 4951.7834 4781.5257 2313.0259 5336.2896 3655.1239 6025.3033 2598.5678 3065.6995 1986.383 6497.6473 50122988 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4934.4105 5738.024 4553.6655 3756.3062 2775.1955 4444.4382 6078.5524 91809.6173 12139.1588 5560.2576 3604.5647 9258.6633 3725.3544 6774.2578 7220.3163 6645.587 3710.1224 2935.129 22984.544 2234.5653 15709.4526 7752.9242 3321.2567 5195.3648 5239.2798 1900.6078 17619.5388 148507549 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium tuberculosis H37Ra superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 6292.5195 10060.1408 3988.5229 7577.1325 5022.2625 4573.3272 24572.9917 4813.0596 6961.7781 9155.736 13575.6144 103059.181 11596.32 8386.0519 6260.3216 7063.4232 7063.4232 4855.9069 9267.2462 6621.6165 7357.8138 6174.9741 8429.7439 4014.3117 12648.2945 13521.9226 12106.3094 19643.9023 8422.2201 10558.1355 5869.4068 11931.0591 8112.5382 5214.3116 20288.3047 292634548 pme Carbon Cycling Carbon degradation Pectin Bacteroides ovatus SD CMC 3f superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 158097.8444 40965.5993 232912.1743 116291.9856 57534.4496 91214.6389 134579.5545 88326.3724 280672.8897 123247.5744 163659.5977 100417.6783 4820471.8651 116126.717 180585.198 184976.8972 207888.0043 207888.0043 74341.9588 170978.1862 102852.0043 137188.5005 212952.0846 604516.1501 82542.7632 68874.0341 124409.7947 84048.6275 278751.0635 188907.9092 132015.2922 204097.0371 80887.3 98922.2622 66469.7548 183006.3795 56798361 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12831.0299 11855.1787 7436.7442 6446.5565 21566.2314 6969.8666 6975.164 3854.4169 12023.3726 16601.2599 16981.1407 74026.6135 17593.5151 14897.0112 4475.1882 19047.167 19047.167 15901.9833 23022.848 10503.4802 41963.1498 34500.7749 271924.4371 8456.0344 15073.7355 10224.6221 11148.5912 87301.8746 28172.8588 14640.7879 7733.8742 17445.5228 51829.6784 11001.7826 26960.0275 27884046 urec Nitrogen Ammonification NA Burkholderia sp. RS99 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 25613.5189 3390.5519 10954.735 7220.7118 5179.2045 353192532 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 8612.8395 5140.5358 1507448.5131 11532.3322 42468.4067 7135.3712 6678.3047 4657.5985 6926.6454 6905.714 8267.18 157069.8621 8043.0948 9223.6776 11081.189 4923.1207 4923.1207 6061.478 12316.3727 7083.7414 5983.0893 8220.4685 11002.9389 3803.588 4614.2493 11514.0125 4140.9973 17993.4759 6570.4613 10974.2949 4837.5145 6396.0735 6543.883 3552.0307 9964.7095 238884501 amyA Carbon Cycling Carbon degradation Starch Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 18307.0479 92634.945 20691.92 38777.2222 23046.6285 25354.8089 5653.6394 7022.2762 14014.33 118923.9405 13422.6499 495250.7866 37562.7101 16214.7002 20101.0385 16358.5644 16358.5644 18045.4453 25995.6189 13075.7934 9829.1051 17820.0138 13877.8611 16672.2539 11039.4403 13911.0965 13617.4431 29137.8805 27575.6039 22328.4706 12193.423 15941.0207 37985.5062 9604.8974 21860.3435 68536414 amyA Carbon Cycling Carbon degradation Starch Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 4553.9366 7444.6706 2120.7569 3779.2209 4902.284 9005.4261 4661.2106 107622.8892 5156.2797 7315.8935 3689.2568 3689.2568 7130.67 16626.3533 6899.1552 4300.2977 9391.5159 6892.0133 4138.019 4799.7981 6377.7858 2870.0613 18110.1474 10533.7798 8553.5979 2952.6373 4516.1659 3971.4664 4599.4358 12882.8856 47115400 rubisco Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha; 6912.9741 13431.037 30538.3188 7336.9293 21241.9872 4808.2432 9665.7205 16803.7376 5950.7517 206398.7146 11478.0052 12079.5521 9477.0739 5084.4175 5084.4175 8466.1893 19938.4662 9793.1115 9056.679 9961.6106 14785.0835 4932.9023 5127.9949 16991.2944 11148.2937 28205.3537 11498.9793 25387.2598 6666.4719 8805.2763 8851.4245 5133.9535 16673.1957 119479243 pel_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7198.1511 247294.2044 6619.3535 11564.443 8628.6886 48007.8874 4490.0056 3730.8266 8496.3432 8483.8234 11171.4153 138810.5157 7732.3635 7761.2713 15334.2662 6807.3703 6807.3703 4101.5372 37967.4283 7721.3928 7559.2084 29129.1229 10300.3494 4731.674 11518.0077 10128.2046 3498.0578 18299.5089 7443.5713 13126.0571 4626.7322 8769.6861 8394.1531 4762.1011 6855.2279 37199901 Sir Sulfur sulfite reduction NA Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 15677.9505 12798.20865 4374.7278 319097.54475 106357.5837 56759.80585 4054.7487 5548.9875 7268.15905 8544.51215 127304.615 7259.74285 8471.24765 5227.12935 8735.0572 8735.0572 6166.36555 19232.4548 7604.1972 18860.4344 90922.09065 42919.94525 13462.42305 5515.8475 15690.90135 15864.82785 32669.5606 9780.5286 19877.0013 12419.9143 198771.7439 8316.23025 7394.72105 17527.61075 221311293 Sir Sulfur sulfite reduction NA Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 30022.8221 41743.8649 10278.2916 55740961 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5666.584 2316.0739 4390.6399 2779.7037 2779.7037 7372.1793 3953.1342 4125.4311 10835.589 5448.5628 6896.8886 8126.8007 9776.2669 302388959 xylj Organic Remediation Aromatics BTEX and related aromatics Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 18678.6351 77629.6038 16312.9553 39045.0453 6673.4741 4177.4818 7940.0988 6423.0599 5551.4833 11381.2377 12580.2652 336982.0136 18260.8748 11833.9959 54871.6153 18406.5004 18406.5004 7170.4499 17958.9493 16160.375 34458.7945 11652.4487 35785.2621 4134.4958 9079.2346 14131.0689 7425.8746 27998.8429 19461.8259 15385.9114 4585.172 6488.4353 13100.7499 5242.5084 10083.7077 261414587 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 7847.557 6245.1671 3970.7537 11125.7405 4842.7378 9580.0338 8947.5575 5983.9782 4240.4404 117784.0463 5098.316 6866.6545 5121.8838 3273.3946 3273.3946 3381.8411 10413.9189 12367.4242 8060.969 7126.4122 10709.2756 3809.4335 8891.7285 4244.6946 16880.2028 4147.0647 9837.9184 4996.3042 4579.401 4275.039 3542.0594 9969.09 182634511 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 22582.7488 11793.6074 18252.585 54567.1596 5642.96 46207.8741 15912.6866 8668.3884 11484.3602 28966.5535 11390.1212 449486.184 16660.2784 17000.679 22420.1345 11281.7187 11281.7187 11935.7777 25531.3332 26072.9538 15905.0214 22736.2551 20536.7417 16753.769 10916.09 20993.3068 10824.3153 35374.8318 33587.1587 26622.7827 9150.2527 16020.8395 17116.2881 9054.7557 25571.1779 160917729 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13906.112 27771.6459 24209.8525 26437.1861 18877.3583 11282.9576 8791.1505 16540.8101 69693.0277 10544.93 117522.5664 16113.0261 266229.7182 25723.4982 34586.5513 37991.6741 21520.239 21520.239 9770.1463 23775.5669 13557.1886 13347.9166 26084.032 15572.7898 35725.6533 20752.929 32720.7232 9590.2058 42406.732 16904.5707 26388.3347 33601.7587 14129.4895 18818.842 14572.2094 23172.8125 365859427 B_lactamase_A Virulence Antibiotic resistance Degradation Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 10024.1471 30800.4839 15537.9187 70052.515 23239.8382 29273.0037 18371.543 18262.3132 14990.2338 6422.237 328659.6557 184473.7978 25947.3452 16495.9708 8826.437 8826.437 5224.5605 24924.0621 22562.388 5522.1115 13825.4614 13312.4389 13577.9305 65876.7828 7183.3348 46798.2275 28430.0146 34031.5618 12295.3161 12471.2816 13015.395 3741.8114 6103.2691 133740357 arsc Metal Homeostasis Arsenic Detoxification Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 22625.9408 12309.4428 13654.0208 63383.0239 17625.3998 5302.5941 18288.7312 171665.0263 10933.7618 14711.3183 15294.0524 6112.0335 410098.4724 19800.6444 14090.9029 13424.9776 7949.1406 7949.1406 9804.9637 23796.5721 18192.6937 18842.9673 20498.6034 18440.9244 11004.1639 8424.7967 19396.7782 9396.3081 36227.1606 16525.3032 23389.527 8338.1557 10380.8415 10607.4128 6884.5221 25997.8605 384100588 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 12300.3589 6722.0615 6149.3762 11755.1261 9530.3664 10472.1635 15132.9729 1932.1325 122939.527 13318.2151 12128.1444 186412.9419 53574.0097 38482.2841 54490.5936 9691.6249 9691.6249 12122.9983 16409.0575 7082.1061 16149.888 12509.5947 7513.6949 5292.614 7990.5517 17295.3483 37057.5477 21269.2193 11582.8201 17278.0262 12185.6807 23907.4411 16077.8411 8753.5207 15596.5039 19568104 exoglucanase Carbon Cycling Carbon degradation Cellulose Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 14149.7082 10324.1811 18462.1209 46642.9908 6969.8454 8113.5105 22709.7951 17071.7363 12406.2516 69741.211 8831.9255 492054.7027 23287.6123 12709.1689 9654.4392 8581.0858 8581.0858 11471.5817 24064.7752 12900.7875 8932.6431 18057.8524 25240.2381 92443.4904 9043.3008 14168.0865 14400.8016 46512.3198 16318.4816 13375.4533 6145.6718 11175.5964 20295.4859 7190.8988 24929.3256 404251762 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. PAMC 26621 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 18002.8513 62065.2521 18345.2633 128698.7966 10489.1826 17145.0143 11865.6709 22875.8121 20757.2705 22144.1637 15700.3643 314574.4748 17645.1877 28500.3001 14330.9432 16111.7175 16111.7175 8926.6087 28901.6909 16365.4465 14317.9095 22641.3483 7781.8705 6768.2544 17378.6667 23265.895 7669.5876 49425.3435 27619.6165 21612.2636 20962.2863 23099.0163 15026.8259 36589.4545 36518.1665 261405493 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 22630.5498 4001.6146 2767.8727 2859.1317 2531.7203 3542.1737 5249.8207 6264.2078 2000 2000 3878.49 10157.8632 4663.6738 8589.3305 6887.2893 6022.3683 2526.8106 2711.9596 8491.8858 3595.6581 13045.6507 8426.5017 2718.2397 3053.0796 5602.1147 2222.0927 5987.255 329760073 aln Organic Remediation Others NA Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 12101.8861 4427.9073 3178.3052 4864.874 2609.9697 87005.9741 3838.3472 2011.4078 2011.4078 3242.3483 6443.3836 3082.4227 3541.6401 4481.959 7776.2185 5272.251 5185.6523 2364.1872 8425.2926 4649.451 3153.3524 2075.5126 6667.6241 99030642 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 12987.8981 5953.7148 13875.0849 10163.0577 6359.7003 7481.9344 6385.7596 4508.7249 10044.6395 14209.4535 4900.5378 184091.9619 11634.9261 11156.5593 30624.6373 5653.0925 5653.0925 7928.7846 15925.541 11710.8465 10600.7135 12974.3666 14095.2966 4221.5571 239360.9074 15419.7443 4483.2695 18261.2435 14173.4151 16719.2444 5962.8612 9039.5341 8809.2267 6830.4464 12883.5229 340552724 alkh Organic Remediation Other Hydrocarbons NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 4863.5177 49048.6222 4009.6508 5557.6404 3473.3925 4445.0203 4481.3112 2750.3247 114413.2935 5007.6438 5881.0511 14856.2883 14856.2883 10620.6162 4253.8562 8613.7442 8242.6614 7988.4255 2688.9487 2841.3617 10816.2294 2406.2366 9712.8383 6288.016 2561.6031 4219.0561 5237.2393 2373.235 7428.1927 170721876 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 50696.3501 31005.3037 44036.4005 23966.6745 60747.633 19753.5929 29041.9188 51481.5867 40351.6623 32329.9329 78633.5639 85642.2854 668479.3629 60266.6682 68535.2967 66507.7046 34588.4893 34588.4893 33645.2139 65385.6036 32019.605 62649.1225 63702.0661 41709.7983 41067.7064 34036.1498 56956.4199 28718.8941 88269.8411 26541.9366 52559.2177 22345.4412 36285.3368 33749.4417 37790.3003 116822.9206 170144335 amyA Carbon Cycling Carbon degradation Starch Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 20428.4032 8776.1215 5355.5338 30096.7492 9338.3866 646158.0891 16165.6016 56712.9125 16269.3601 40256.7256 19305.552 338808.6952 22287.1642 27070.8483 18383.8374 15063.0699 15063.0699 11286.6015 43063.8073 17786.6777 12001.9486 17626.6968 17587.1393 8533.1353 21867.4383 40480.1646 12855.3183 79539.6243 19716.5593 70432.9465 11547.2522 16480.9119 26184.0508 9537.3528 29400.3089 327372764 cysJ Sulfur Reduction NA Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 3741.2763 36533.4836 6757.6425 17141.2311 29371.0547 5154.8382 4842.434 2716.8374 3158.3158 5353.4639 6222.2902 133912.3724 6042.7274 6064.9095 14417.85 5250.5622 5250.5622 2922.1495 6821.5003 5285.698 4193.3708 3959.373 12622.577 6952.5498 4318.2303 14014.7351 3955.3137 16582.8508 7746.0476 11599.5038 5136.4234 5476.7579 2737.3883 4220.9644 6939.893 237684403 pme Carbon Cycling Carbon degradation Pectin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 5081.0412 3488.2748 4189.8711 3639.1591 8412.8861 5079.154 94159.847 6180.2617 13918.6299 6223.5823 2854.193 5526.1507 10722.75 10302.1596 5469.2847 2809.5004 8203.2534 375081465 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 10743.3768 7164.5568 5540.6429 10376.1223 7831.7169 5023.4868 9444.2252 9169.2281 4206.5149 201197.3069 14820.7203 10223.5582 5829.9174 5965.8705 5965.8705 7285.2214 17619.0783 10765.9938 7523.0197 13316.8849 13102.0177 5892.6718 4739.9104 12560.1633 4260.971 19579.825 6338.8624 10491.7637 5424.1005 7148.2281 7660.1235 5501.9141 13979.5478 225376384 pme Carbon Cycling Carbon degradation Pectin Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 52705.1922 5247.0766 5415.0415 19718.1758 2589.967 4674.7892 34111.6183 10805.9619 402734.7913 4836.3575 7098.5325 4396.9225 4272.436 4272.436 4504.8299 7491.9552 4357.2697 4880.8037 7524.7261 10146.3977 5807.053 8216.9387 2249.1078 10474.1572 11767.5276 6668.7795 3353.1076 9932.915 5539.9793 2941.8733 184128.6783 303323575 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 1047415.9977 46455.9534 30116.4626 65436.4549 61606.7639 24577.7735 52349.011 23686.6416 25125.2304 37828.5037 26793.1136 485859.4364 31085.6435 50651.2358 29565.781 28023.8285 28023.8285 24675.9089 42566.6886 25003.4266 35465.134 41197.4616 30692.2106 14433.2905 21966.5373 32617.5117 18642.1302 59260.8943 30308.0817 40289.3552 66338.8436 23403.6727 49638.0839 29908.382 26876.0143 323365268 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 8300.3526 15209.0308 7588.8601 5184.4365 3758.8121 3057.7515 6697.9814 8107.896 3393.4617 153405.0636 7269.6852 6692.5013 3993.6638 13934.2689 13934.2689 4477.8852 13099.0965 6444.3282 5283.8617 6838.707 10029.7483 2799.7475 10357.3756 9591.378 17981.1707 5119.1785 10533.3917 5106.1611 5198.7863 4626.5783 2973.7571 11076.5619 146323129 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5142.8978 2521.5879 2932.7879 3474.4747 5126.1555 70873.7664 4096.3105 4666.6541 2907.4639 2907.4639 2776.2816 5809.5453 5494.856 5370.2314 4612.7256 5021.4462 17638.5242 2286.7589 6746.6643 2880.2134 9775.4431 6628.0005 8378.4163 2642.6634 3330.32735 4597.3017 3116.515 5635.8454 89953239 phytase Phosphorus Phytic acid hydrolysis NA Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 285418.9324 2298.9693 209401598 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31956.0236 26517.0432 1693611.975 17812.1159 28340.168 31196.7675 64611.6364 17101.6062 29175.5883 54865.8437 34016.7391 589206.1915 104130.1985 90270.0415 72149.8084 39162.9556 39162.9556 23931.5961 160191.4231 47146.584 28393.0501 309440.3953 39810.5597 53564.4784 34668.8893 37759.3423 51945.4077 113399.942 38073.5727 113477.2302 20098.822 83538.9229 107295.9335 21469.1853 61963.5998 326947818 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 79573.5488 11400.5875 8778.9436 55297.7474 21964.5517 33151.2211 5265.7172 74664.6951 5953.776 47441.1083 30986.5205 20831.8399 1706805.1915 33583.7618 29104.1963 86809.237 36460.1851 36460.1851 9627.6561 39839.8512 21154.1411 52432.3568 53173.8457 12577.215 26297.5972 18837.4446 42121.3979 66415.9815 76864.3451 101862.293 67467.7343 19151.0891 23622.734 19227.3442 16122.9904 15781.1323 383936768 phytase Phosphorus Phytic acid hydrolysis NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 160799.2439 418534.4854 140124.5285 82683.9912 68672.2816 436905.2889 62517.1387 220587.7079 94263.9344 112547.0041 378788.1177 112657.393 5871265.7098 104718.2376 181541.6993 497922.5258 116838.9299 116838.9299 96600.906 204278.0208 140488.0019 143291.1737 244314.4928 135447.7567 91743.1616 75352.9618 153531.3488 151908.1904 342913.3752 156049.4009 181738.9904 108729.4392 115427.8727 182177.0201 97435.6088 235957.84 221134643 amyA Carbon Cycling Carbon degradation Starch Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 8419.3317 8874.8105 7819.5119 3020.4656 4126.3722 8854.2887 2274.2772 68350.9818 5376.7648 3531.046 4735.4048 4735.4048 5518.8731 277753.6139 4395.7209 6609.7909 2853.7144 7849.4579 19132.3062 7252.0945 2402.1258 2389.8978 2117.5806 226908019 ppx Phosphorus Polyphosphate degradation NA Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 44945.161 35351.0055 9609.1423 12283.2926 16635.6559 17683.4261 11622.9223 23281.9451 26946.6148 38310.9117 29888.7528 1060157.8694 23719.2389 19216.081 42858.9637 26937.1249 26937.1249 29530.6988 47079.9803 24552.9257 24472.4397 26233.0654 22545.9056 20547.8634 43006.4001 24249.0804 15054.0529 63784.8446 21490.9296 34742.598 15381.2059 43125.0824 25027.5628 17565.0218 33861.7986 219950314 alginase Carbon Cycling Carbon degradation Alginate Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 5871.1921 4296.0789 18778.0868 5602.3529 8371.9386 7279.3469 4391.3074 5170.8767 5571.9818 75402.6 6932.3937 4456.2592 2942.3202 2942.3202 3110.6968 13080.246 5502.4538 16623.7324 6869.2674 6455.3007 12863.9309 9625.1844 3332.3992 19472.3305 6462.0535 4936.2411 3135.2465 4798.6084 3452.2179 61396.7547 84386131 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 3897.0048 1222235.7851 16404.7645 20419.1427 18485.6818 3046.6337 4069.5993 56051.4641 4740.1255 6786.3842 5403.4094 80738.1125 11264.7815 22571.1535 32303.6436 3697.909 3697.909 6808.2639 26834.4312 6537.8552 5523.7158 9569.7841 7808.7355 8139.1234 5461.3702 17240.567 13655.5619 13658.5281 11019.6016 3321.8079 6137.3723 22093.2463 19146.9397 8079.4117 334734104 ppx Phosphorus Polyphosphate degradation NA Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 87311.9977 13684.0294 17864.6669 37005.6616 274507.6983 48056.6655 34616.7523 33807.431 20953.8173 99962.3545 42613.5189 33500.8653 736434.6844 186251.5182 56268.3506 45372.2553 31259.47 31259.47 30827.2645 50234.7595 40515.8296 34603.2905 47588.4098 112062.512 46406.8328 23353.9252 67182.4862 33763.6908 64800.0964 80978.4835 52565.9417 21701.3737 27414.8674 56190.4484 13097.6661 36351.4857 76667400 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 33408.8262 19976.8287 4660.3776 10470.2706 8095.1754 9627.1842 11192.6819 8307.951 23296.8619 16460.1353 187130.6894 28794.9998 5632.6633 16223.7209 27974.507 27974.507 6180.5318 27369.7764 10048.2966 16116.6117 44123.6834 17443.1221 25082.0865 10930.3509 9830.6465 7852.983 75567.6146 17442.853 19629.9515 10428.0611 12785.7089 15502.9867 8393.1472 18393.6177 384092510 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4892.9867 11504.1759 2807.3414 138274.4254 5323.3807 5392.099 6832.3211 14101.4935 7573.961 9035.7194 3296.2648 8625.2255 2548.4426 10280.0319 6294.1112 7942.2904 2677.1724 4644.5263 302675262 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 13299.3815 5286.6249 10019.645 10266.2525 4124.797 4235.7747 7608.8301 10293.661 16376.632 112631.0531 11694.7627 8129.0455 5178.6198 5178.6198 4359.7911 13887.8034 7077.8588 11753.4584 10974.7623 10867.1181 4254.3533 5781.1219 9757.8433 5741.169 47120.7713 7756.3446 10636.9748 5865.4571 7326.0122 15005.4565 31966.0658 30710.8544 148572420 tktA Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 3929.631 5478.8743 26401.7912 3202.1162 3602.9711 3229.6753 3778.5156 3778.5156 2677.4864 7688.5973 4296.0369 68258.0964 2708.4885 6207.8823 2320.0841 22901.3084 6661.5827 2187.9493 3233.0359 3605.3312 5403.8544 398248243 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5300.4274 8544.8041 8105.1868 6891.1308 3129.7421 3141.1364 13416.6978 7416.0606 5680.8533 64667.3849 10102.5785 8317.2268 7246.1377 4900.172 4900.172 5564.0171 15696.9916 7066.7821 13118.6232 8238.213 79209.267 5556.6378 3221.2358 7228.3096 5922.1285 16680.6666 5312.5047 8483.1955 6333.7703 13192.36 10102.6581 3471.3911 9883.6221 192764382 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9504.5841 7904.1016 4069.3484 137467.408 4161.9133 10586.9474 59836.74 10059.6185 5583.7229 3241.5721 3241.5721 2654.2709 16793.5522 4933.2359 8509.9475 9721.4591 4841.9695 2196.7747 3306.9942 8120.026 2316.9959 10567.9359 5563.2528 6242.286 2343.9606 2774.404 3229.7761 156708224 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 15900.151 14056.2384 7335.7591 11535.2483 7953.5355 12527.2008 3963.7514 14265.2537 23905.0697 13099.6717 267959.8413 12872.9077 16110.2999 27829.4113 10249.4957 10249.4957 17083.0173 26449.5204 16515.5056 629238.0909 24242.0999 14496.9614 9832.774 7799.4581 15254.8576 10245.8853 28498.6019 23804.3304 19013.6492 6810.2029 12466.3631 17187.099 10248.3173 27496.6705 339835192 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus sp. GGI-221 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 11251.5711 27083.4908 8480.4626 25765.1085 9232.249 4999.0597 13361.3108 15509.8752 14192.2212 160678.4579 10880.0383 23886.9531 13185.2664 12813.4151 12813.4151 12263.9974 20240.5754 8734.2954 8555.3846 11053.7502 10411.8641 10263.8445 12955.5821 11908.0903 15442.0543 112375.9425 17727.9884 30988.4494 5369.7918 10268.0616 39488.0978 8993.8508 314619.8169 1322079 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes villosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 18243.2248 9578.4769 16410.4929 9477.8213 14118.82 16585.0287 17532.8028 19882.7763 15130.3104 9427.7984 962161.6806 23124.3214 34717.0111 10705.496 6951.0646 6951.0646 369110.2823 20796.0226 17434.2096 15023.7816 35806.7049 21996.5629 13660.0272 12049.4011 21184.1257 12241.2716 41504.1745 19101.2135 23023.2941 7497.9223 15597.0875 30461.6473 10979.2135 26522.5633 121700749 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 11159.7261 5675.9497 3261.1232 2521.1637 3741.7075 3435.7402 2962.6511 83570.5904 4719.0169 4479.0956 2579.774 2579.774 48683.1955 12108.1218 17994.9059 3036.4881 8626.5261 2029.8779 7328.3989 4634.6117 1680.1297 2532.9719 323365742 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 10173.0322 12480.5916 12388.9323 10187.3135 3179.8509 5041.654 10603.9528 9555.3923 32975.849 200366.7653 10488.5206 11935.4518 7079.9778 4664.2296 4664.2296 6614.8711 8629.287 8765.4118 9053.1349 7742.0696 8254.9599 5055.6459 4488.1498 13321.674 5457.87 25006.5119 6956.6198 16292.6324 5299.5158 6070.8601 6764.7592 3826.6473 11245.8782 134077613 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4604.5049 2683.4909 4451.8654 4349.5118 5680.728 8113.9865 5896.1064 17769.5482 8834.5362 6603.9145 6603.9145 2824.0409 13511.6126 3917.2863 4232.0684 5019.8973 33350.2609 5504.2027 4505.3257 7382.2331 2995.1351 53487.6391 6249.5719 4533.9558 4152.3361 3288.6842 3700.7497 354582972 Sir Sulfur sulfite reduction NA Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 11089.9566 5121.0609 15714.1523 5437.0307 2147.3257 2106.3796 3900.0522 6009.5475 2734.3836 4980.4412 2684.0247 2684.0247 3693.9961 7253.5747 5704.4057 2844.9613 10717.3861 4240.1418 5418.4756 2504.3814 4458.5962 3904.5859 187716020 ppx Phosphorus Polyphosphate degradation NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 55672.6436 11818.7432 15934.2023 24806.7819 59464.6053 70219.7456 38551.1295 342106.4691 31699.3516 67661.5277 64667.5635 49467.8158 2209666.6227 33675.8291 36171.4415 40990.9086 37786.553 37786.553 43926.0971 66200.011 48764.4425 50733.612 83985.1222 80307.2181 15589.0529 23929.9797 46200.5635 135779.965 175233.7546 100278.5374 62418.0319 63228.1277 79237.2129 43843.1789 83539.6056 123290.476 255954671 amyA Carbon Cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 76597.6688 111548.2524 25098.8729 27715.3936 79179.7803 857076.4756 57746.7773 58703.6581 49297.2646 78236.5136 956557.1328 69232.8676 73257.7325 75706.3615 48601.7062 48601.7062 104622.154 77269.648 45111.563 177607.7479 89758.0694 78458.6803 92789.5716 71165.3929 35464.4681 34610.4029 188881.1546 57396.938 68269.2568 115291.2801 62731.6569 62571.1291 61369.5122 44016.643 308741610 amyA Carbon Cycling Carbon degradation Starch Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 54829.1615 86534.208 4476.3911 4981.9641 41419.2866 16044.1742 19278.1129 68012.5839 24427.7247 214067.5859 23825.6048 23645.7234 37888.5794 61944.591 61944.591 10960.9933 43403.1202 10351.3045 13922.771 161791.9849 28024.525 32299.7273 28913.5971 95162.5898 21428.6243 49653.0005 75547.5799 29988.7823 15761.8727 22841.804 29380.4676 17185.9104 7251.8456 209401972 tutfdg Organic Remediation Aromatics BTEX and related aromatics Sulfate-reducing bacterium PRTOL1 superkingdom:Bacteria; 16016.5637 16174.0211 5922.9317 186021.273 6333.5332 5520.3482 14938.4316 5860.5477 9882.1297 6697.4261 21668.4651 364935.9597 12458.4356 10594.9221 25741.625 26851.395 26851.395 17448.7249 15567.0676 25411.931 45098.2827 27080.0983 13367.7584 18767.6368 17426.5059 43810.8525 7702.7032 53399.7878 16263.6075 15155.0628 9067.9645 11956.3293 15243.415 13110.8162 20455.4457 317133580 urec Nitrogen Ammonification NA Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 7440.4492 35654.8436 5757.9921 4179.3136 3013.553 6010.0667 7544.4622 4875.7574 92508.5448 7687.7864 6052.5284 6006.028 3539.148 3539.148 20352.5141 14419.4388 6339.3081 6121.0571 14595.88 6938.7352 3087.8756 3865.9943 117726.4425 4087.4429 17589.2988 8536.621 12155.5309 3636.5253 8559.6731 10777.2102 5395.3037 11269.7077 221133539 tehb Metal Homeostasis Tellurium Detoxification Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 6155.1003 11703.595 2615.754 4357.4714 2927.3562 4759.9552 94281.8379 3901.5185 5208.1031 9217.4149 7237.0562 7237.0562 2908.6676 4556.4113 3453.7501 46784.0559 5716.2608 2492.6057 7194.23 10961.7859 5807.1509 3156.638 3866.0075 2879.272 2428.3971 5358.6437 372281194 pme Carbon Cycling Carbon degradation Pectin Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 11764.5302 39186.2961 11337.2331 109686.6998 19747.3476 11434.5018 6814.8719 18918.0663 6205.4351 126798.7478 20792.4675 12737.6279 8283.7091 9421.8277 9421.8277 5381.9812 16820.8991 11733.3254 5439.8093 8413.2659 8160.498 2975.8101 8296.5787 24257.2083 8824.1075 21279.364 19406.129 16684.8189 9872.4924 8790.0092 10121.1477 12515.7595 5869.4202 422314107 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15376.5916 5522.2297 8176.9669 63934.5094 7627.2357 8318.9073 6591.552 9226.2345 9670.0806 85978.9924 6141.5679 6256.617 4417.4326 6108.8929 6108.8929 5982.3262 14328.7023 5529.8831 32102.8716 10526.6692 8663.1992 4539.8241 5137.9899 9721.0865 10383.9141 26673.8764 9072.4494 13435.8797 12208.6696 51146.6923 8935.565 3793.7931 13123.3647 373102616 fccab Sulfur Sulfide Oxidation NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 12712.4673 9408.8295 27233.6543 4670.4493 11333.908 17072.6808 45023.6513 12398.0567 21067.5206 16733.5231 133425.2039 68628.3868 13589.887 22412.9847 36094.9044 36094.9044 41710.3116 23805.0794 18576.1107 25546.9726 37950.6342 12394.9202 10895.5648 14788.2306 12272.8078 56405.7662 63217.3999 27329.8823 25012.1855 17040.1095 29249.909 67221.0623 25662.3784 18317.9037 359405813 terc Metal Homeostasis Tellurium Detoxification Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 247328.2329 2515.4543 31848.8157 4946.5745 4946.5745 5322.3707 28747.6741 183217828 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 68419.0525 93450.0717 7977.6433 15479.5519 10642.6959 5544.1688 15079.8959 17261.8707 96070.7962 45046.4276 13110.5624 147157.8588 36778.8361 10263.5717 15656.2256 9748.2991 9748.2991 7119.4052 18328.4208 11657.6471 7058.0966 19375.7993 34611.1515 7461.6346 18807.1094 14205.3355 11574.6965 25903.519 15117.8938 24237.1891 6132.8901 9765.7172 27285.8034 7917.2744 14786.9566 284031806 arsc Metal Homeostasis Arsenic Detoxification Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 132047.2449 7930.0808 10205.5012 31319.7321 6351.8231 23562.662 64787.2833 84179.999 19965.8128 33742.1265 28586.1017 610625.0402 14630.5889 36752.8774 44816.105 60518.6017 60518.6017 11727.8656 94254.5703 31998.5445 187705.2272 51104.6035 18833.0737 15342.6285 33155.5147 68809.1586 26255.3925 92244.5831 34258.6976 21327.8588 26204.7884 26740.8703 48886.9406 17989.761 66078.1583 16126632 vana Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 15567.0733 5333.0069 7800.0163 8204.1912 4637.1436 4670.316 3500.6611 4389.8797 7253.5681 94838.0638 8451.2088 8288.7644 4805.3593 7029.6551 7029.6551 10206.8802 5272.8675 3950.6323 12304.3242 3871.5099 3304.5415 2827.7633 2489.5329 76286.3643 4851.1667 8916.7536 17822.2804 3561.6081 12391.6379 7076.7042 5755.1864 28144223 urec Nitrogen Ammonification NA Phaeodactylum tricornutum superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 8017.1772 7737.8267 6090.6068 17763.579 3034.9279 4275.5485 3587.2452 5823.0532 3067.2172 76748.7337 5032.0439 8095.9447 6075.8282 2561.2631 2561.2631 3162.5813 14767.7732 6571.9331 544892.6096 11678.5099 5273.237 10844.7454 3528.9422 9031.2624 3757.8228 14355.9232 10121.5587 12558.9204 2774.0071 3887.3724 3506.3292 2187.4161 149915183 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 177931.7076 20608.4488 34661.8469 4341.3394 5013.2198 6595.5775 3388.7227 4159.1869 5621.7563 14352.1509 221015.5132 5679.0371 33486.7258 5790.8661 8056.4594 8056.4594 13601.6401 28541.5472 27086.3447 3823.4916 5776.7245 11902.9854 12161.754 8998.9853 15050.7708 48137.099 24072.8534 4590.1195 18372.6273 25535.4983 9122.3491 12369.4878 8160.05 35455.466 71841644 narg Nitrogen Denitrification NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7273.874 8314.4292 27031.9597 16459.2582 3350.4567 4089.0446 5731.4591 3960.1326 405211.2186 15071.6594 8891.9496 8452.3219 6257.9145 6257.9145 4652.1641 6981.9998 10560.4819 3833.9858 6972.2277 70547.218 5370.2041 15139.2334 4652.1295 14087.6408 15013.4941 14112.5402 6222.5994 6169.8931 7794.1918 3589.6079 5405.7829 220936358 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 56718.4301 383208.3137 21135.8004 80782.9331 13998.3887 12747.9779 22851.2611 40672.7558 33330.385 121756.0713 23218.2231 381373.8239 131169.7543 30942.3529 38152.0835 49444.2322 49444.2322 17773.3774 47160.1324 24664.5574 23111.4031 24725.9144 44726.6935 16764.4088 30914.4884 35382.9076 40502.5224 72600.2234 41356.3671 46059.431 19856.0239 82388.2163 36234.6584 30005.5385 411758.6155 116743270 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19542.1501 11600.8799 35853.3885 33784.3441 13875.9664 240764.5704 20551.603 65113.1765 25294.5348 45750.0622 22562.8901 357554.8043 23051.9765 24399.9097 50463.6225 17799.2494 17799.2494 22641.4606 33745.6298 17708.1981 81228.9673 24196.7228 12389.8838 11843.4476 11541.7829 20897.2768 10437.9644 36909.4187 21884.5074 36753.0888 12270.2145 13901.4856 23775.8333 17553.3513 24942.9292 350553965 TIM Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 4445.7368 8067.6262 4821.8308 4626.3357 3053.6054 8665.1884 25041.4818 2438.4362 108590.9913 8792.6786 7435.911 7198.1907 3375.3095 3375.3095 5425.6027 14230.4604 8008.4778 7608.153 14823.4628 9531.1992 3973.5632 2614.5084 7482.6587 3255.4611 19886.1286 6221.5329 8085.091 3622.3722 6321.3345 4018.2765 4753.5303 9479.5408 329889278 linc Organic Remediation Pesticides related compound NA Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 14187.5059 5768.8427 4052.2306 4084.7824 10658.6067 28319.8043 22303.7704 13756.7653 1925480.3312 10330.7588 10212.4021 11734.1067 10566.4816 10566.4816 5586.9912 320444.7482 9447.8129 4153.3883 10502.8143 10502.3863 4509.8089 11673.9607 20164.1259 27848.2922 29710.6566 10002.5259 26739.987 10835.4152 13247.6449 13257.1667 7100.3811 24393.9945 329301061 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 5106.8342 3344.2134 10184.779 3381.5945 9427.1424 3501.8737 78167184 nifh Nitrogen Nitrogen fixation NA Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 11908.8104 16298.0383 24133.6462 51289.6072 34468.7399 9918.5948 3423.7382 132551.6254 5381.3726 21750.6495 21404.9763 29202.7147 281563.3252 62901.8507 16165.5301 46860.4868 27277.2378 27277.2378 6895.065 25016.8576 15879.4092 17439.8759 14764.1801 8794.8248 9076.9788 35490.948 17973.9316 26417.7574 48090.382 17711.6766 32585.4966 8613.7084 13325.9982 11992.2977 4347.9745 13354.3964 37726814 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5425.2693 213141.2978 3406.6823 3002.2625 103128.7606 4036.3569 6380.1718 4842.7675 4842.7675 4695.7835 16828.2508 7542.133 2510.9806 5532.4998 11842.2542 4087.2243 5446.178 3380.0818 2415.185 359304448 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 25464.5652 12669.6902 10022.6137 6528.7841 3373.4617 3971.5311 7845.1206 17467.3904 7511.0839 15204.7011 126280.6339 6342.1436 15656.2658 7585.4539 6357.682 6357.682 81790.754 16560.9726 9529.3397 45433.9293 17168.1081 11335.86 6290.1195 6379.8116 45775.8936 36575.7767 22916.3863 10915.4445 40725.0573 10289.5487 7763.0418 10807.129 9807.6469 13990.382 167594225 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7839.879 24296.3359 4851.601 6144.4834 2245.7789 1871.2776 1871.2776 10284.2525 4585.9544 4795.2346 7639.5872 1949.2262 4086.405 5522.4056 152992096 SoxA Sulfur Sulfur Oxidation NA Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 6315.915 5838.2566 24846.1343 7580.318 10207.577 8707.9249 4699.7327 5261.5182 11196.1039 7365.753 216425.585 9360.4138 5315.7372 7944.1104 7198.2838 7198.2838 4469.5245 16417.916 11502.9159 39173.2435 8232.254 21472.9984 5719.3399 6470.8483 16498.5277 4430.1773 17343.2313 19880.9893 12101.6895 6584.2689 5932.8491 12612.2314 5042.5592 11078.0453 378571928 terc Metal Homeostasis Tellurium Detoxification Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5356.7695 8756.3564 5245.8873 3676.3093 5055.7996 144065.8318 4572.555 89730.0308 89730.0308 9178.1156 6431.356 6229.142 5224.333 5322.8816 3972.3117 9788.2661 3033.8231 11178.2415 5388.6322 5794.4572 4662.7026 3911.0652 2707.3777 6259.672 288869050 ppx Phosphorus Polyphosphate degradation NA Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 109079.3924 63767.0839 87162.733 26644.49 47338.1338 1975430.6515 176212.5182 287246.1792 33380.657 24224.8235 43670.5995 94336.0861 766390.8594 53260.4881 45047.4305 77916.0701 38731.744 38731.744 21242.2162 103582.3124 41376.5193 145557.8248 96200.7831 128115.6393 37267.3371 22453.1295 218529.5427 92751.8342 139568.9075 43412.3862 78621.2065 90536.1058 55055.1194 57737.7797 37338.3965 107616.4465 291196998 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6402.5298 62824.7086 4740.1985 11130.9706 4861.3624 4111.4838 42930.5342 8025.7964 7182.5389 24105.1698 139052.6574 8945.7082 9706.5407 10610.3418 8149.4358 8149.4358 7207.188 13172.4627 10933.8647 9227.6401 14815.9272 5014.0253 6015.5302 7267.0082 11129.6541 10807.8357 122170.5095 20578.0647 10840.7739 10521.9659 6349.5294 6094.4205 3814.4739 9163.6294 42556011 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio mixtus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 4472.3971 27013.345 2030.6854 2030.6854 2128.507 256725305 rgh Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 9047.8393 6542.3642 9163.4175 14047.7905 17469.516 8129.003 5955.932 10950.6285 24456.9886 32204.0867 76469.9055 18078.4382 17234.2191 21054.4669 9287.1585 9287.1585 21443.0212 208277.5372 9028.8715 91392.5962 17372.0261 166995.4027 10481.104 14570.8344 11387.3731 15227.3143 34983.7205 192153.1494 10065.7856 8294.4246 11244.6148 10154.8443 5620.8884 16895.5617 119766150 terc Metal Homeostasis Tellurium Detoxification Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7548.5421 6062.2333 6379.7762 5970.7643 5214.0995 3887.2115 8140.5502 5213.953 2570.724 146765.6714 6380.5779 5812.1563 5624.1929 3086.3419 3086.3419 6298.695 11353.3159 10290.2446 41673.4039 11887.0493 8434.1495 4018.4348 5450.3323 11238.4814 3909.6098 11545.2493 9462.0023 9778.9291 4462.4904 6240.1739 6454.2295 4158.4116 20046.7756 156744162 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 115054.7159 20999.2312 27729.1884 43163.8678 27696.8626 31291.3746 162285.4239 141700.224 27736.196 66201.3312 51079.7587 74416.3246 1183687.2625 27963.7549 69184.1384 172471.3059 93331.9948 93331.9948 60446.2229 101616.16 37702.2001 249208.0739 103712.1179 137916.7831 43074.6255 62933.483 41370.4418 44522.452 448509.992 101188.3005 161538.8938 44105.5092 73398.1384 69300.0495 52555.8026 96063.1846 373499691 pula Carbon Cycling Carbon degradation Starch Prevotella micans F0438 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 6999.7523 428330.839 7513.3902 7533.6374 7277.6918 12525.9797 19215.9276 4842.7656 17799.319 7945.9967 127907.9078 7026.5976 22621.5749 5073.6571 5344.5536 5344.5536 5068.4548 12092.0792 6683.0131 10738.6868 6686.2136 12853.748 2951.7897 3827.3857 9797.9394 10841.9378 13070.1655 10204.4874 14808.8106 4158.9691 12741.6184 6408.2575 4832.914 9261.4219 339453152 tehb Metal Homeostasis Tellurium Detoxification Streptococcus sp. oral taxon 056 str. F0418 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sp. oral taxon 056; 964347.0905 7695.8331 8482.146 16722.2052 11884.1418 4824.5552 6212.9191 12999.6033 5277.4081 218833.6964 14516.2551 10187.6969 28424.4697 3392.7428 3392.7428 7976.8326 12051.6951 14420.6901 10198.7542 14539.1844 31510.1329 109393.6552 4610.3408 10583.0477 5350.7278 21595.2473 9692.6776 12876.6155 7822.1716 5817.2968 18354.9143 3661.6898 13129.5625 349586286 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 21769.6966 2949173.4218 20155.4667 919318.3688 12920.6007 7637.9451 55631.7366 7612.1226 9885.9719 58571.9376 27951.8216 563096.2617 14773.524 41613.5202 28498.7798 16373.7969 16373.7969 92121.4104 355682.2972 22905.8776 46022.7207 32510.3359 17581.5779 23073.4705 39887.4123 39053.0212 50600.9699 75938.9107 61881.1652 82012.5049 23678.015 33902.6168 77303.9985 19523.4264 139697.4151 288344444 bphF1 Organic Remediation Aromatics Polycyclic aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 20692.965 2761.8934 3488.3157 44722.5341 4197.8773 8306.2067 4342.7232 121584.9417 4559.5217 7246.7605 4377.1412 4377.1412 3298.1113 20240.8145 3606.227 6268.7865 264064.5311 2361.3446 3612.4292 6563.9061 3518.8677 27380.6676 6992.6531 8704.1912 4377.6108 9710.7604 5778.0056 307586380 tehb Metal Homeostasis Tellurium Detoxification Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13376.5552 17954.7706 8678.9567 49514.4618 10264.3503 5088.652 38449.9418 17085.63 12657.6468 14356.9378 13163.8857 275840.4274 81244.4457 16087.0942 15795.775 16556.236 16556.236 7406.0288 88396.2039 11431.2174 34647.5668 39428.4107 13073.4638 8422.4598 8079.8957 16209.1329 9309.7682 67083.7463 18848.9712 22298.7344 7519.8286 12868.7324 14591.4295 7599.5515 42574.1971 358755007 chitinase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 5529.8129 9576.0446 4456.9185 2680.7297 2524.0596 38356.6241 3584.5432 85281.4951 7264.2186 6422.0577 4807.214 4896.4871 2845.8543 6961.1055 4932.0306 2782.2502 4442.2464 2197.6797 283820330 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 25553.4813 13371.5315 5351.6852 12248.4194 3714.8456 18425.7705 20980.1885 9848.4287 8566.742 31946.7476 589697.0951 50482.4321 11366.9558 13165.8741 10013.6504 10013.6504 3665.3703 26053.028 10826.7949 11059.8989 24409.1202 17050.7457 7389.0731 13379.3288 10130.493 16183.7832 49674.5942 29852.3302 17523.6294 8271.7849 13613.5412 10723.1419 8105.7605 11062.004 121529335 dehh Organic Remediation Chlorinated solvents NA Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 34737.7563 30846.5529 6719.099 13056.3522 2022749.3874 97749.8635 227523.876 4600.8521 7086.3972 11692.765 59149.1507 255506.5127 13147.942 10992.1978 15595.0084 23626.8995 23626.8995 8082.1079 27445.1406 29758.7079 62525.6627 37057.6308 34639.8379 12370.2943 12852.6402 144053.9591 33020.9645 41430.4438 26111.8459 263959.5636 33448.2438 20421.8198 17213.2088 22552.8407 25014.9983 345633979 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 9785.902 5345.6472 21201.7161 29540.1886 9150.9356 8613.3541 6980.6756 7467.7103 7677.8399 11507.1529 123465.2647 5699.4826 7251.2264 15934.2013 7438.6454 7438.6454 5723.0211 13634.2935 6485.9708 21496.064 14237.1785 17397.9593 4803.8925 5752.0669 24596.1775 16101.4871 32669.594 10908.5245 19777.096 10379.7902 7648.742 9100.3945 5443.7172 12289.2245 119402187 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 4341.2504 2937.7946 3726.1756 4181.4537 2190.5359 6826.1603 3584.2605 18246.0301 18246.0301 3475.9916 8242.1759 6656.3909 3523.5537 4863.4389 2336.0844 4031.6957 7659.3438 11568.5731 19913.8406 7202.5048 9065.8918 2846.8914 3976.5352 6567.8269 23824.4517 6891.8682 118171608 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 104080.7564 18528.227 155459.9062 26778.3203 98563.0931 73565.7752 47590.0542 56864.1051 23494.4969 41199.997 124115.0321 51710.5049 786062.6125 40719.4958 97215.1121 91591.8118 77703.9625 77703.9625 32761.1804 77718.6232 59746.4413 49911.3839 57547.506 87925.1532 54191.3508 67705.1627 57938.9215 51389.0354 187443.0662 70402.1116 111250.662 44790.2198 66037.1228 67575.8386 43037.6099 55825.1319 361054167 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 112156.1463 94392.0161 56660.1833 81592.3628 108731.7629 24978.8513 68537.1922 86267.4519 79761.339 69521.9717 87505.1092 57956.6098 2150814.2602 129037.0482 79171.7273 87150.0223 81672.1067 81672.1067 50094.3979 133486.2924 67362.2737 338697.955 292089.2841 112912.6456 42215.5812 93026.2182 59838.4057 52562.7121 146585.1501 90335.2687 408598.566 80653.794 47229.5892 74045.0881 71277.0934 290101.8828 255010730 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 9367.6727 33727.4206 3346.7 8311.7621 3028.2214 5321.7606 4196.759 128012.2194 9575.2417 7705.7455 5656.9086 5656.9086 14619.984 18158.3394 17070.2948 10486.8884 5686.5453 5859.8303 3734.1778 4911.9922 17299.4083 4843.2284 29503.9702 64231.9998 20668.3264 9769.7257 9194.2567 7683.4243 3572.2356 7914.6903 168703992 amyA Carbon Cycling Carbon degradation Starch Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 16989.8402 9322.9518 10263.0213 11146.9304 9926.6661 11833.4158 12428.4958 14330.7499 7412.1073 235981.6544 14793.378 16209.9685 11882.4941 6191.6538 6191.6538 10280.6984 19185.5356 18957.9711 17952.0516 20398.17 20232.7163 7613.2847 7808.7752 19209.4661 7562.7 35395.5592 18654.109 21306.8724 8288.0443 8828.9348 13117.7348 7017.0216 23249.6965 407937241 phn Organic Remediation Herbicides related compound NA Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 794072.5245 50221.2976 267079.2226 139210.4569 158445.7168 1218707.1166 331345.1092 630290.27 235821.5791 223070.1479 274002.9524 150454.8958 6825068.3723 283029.3943 557283.3545 239937.5643 185239.6194 185239.6194 135727.0996 549576.6941 213357.0202 185905.8862 456821.7085 808631.2947 295672.2786 71636.5115 183297.2753 280958.5366 395845.6934 229247.0692 317894.6392 175008.0794 154910.658 200209.608 88547.3108 486389.8194 302388369 amyA Carbon Cycling Carbon degradation Starch Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 4821.3731 7914.1324 2723.1635 3779.3209 3136.7835 3717.136 4807.509 2503.7362 86177.80265 6020.7512 9011.1212 4977.375 8001.2026 10565.1671 4277.4452 3000.3931 2584.44735 9147.8786 5548.05365 6957.6292 3286.2964 4715.54235 3604.6413 2778.5798 6595.75785 377817486 nfsb_2 Organic Remediation Aromatics Nitoaromatics Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 33629.9318 16679.933 29190.4898 43653.1388 7801.8616 20899.2576 18907.49 49742.4299 16544.6747 24360.6229 14173.801 676485.3163 21792.8137 37376.4109 24344.6741 12392.3626 12392.3626 19192.6043 35846.3869 25158.887 38369.8547 25831.1027 34972.7767 12404.7468 16309.1971 28721.5209 14158.2919 60116.0493 24467.8773 28924.9504 19132.431 17917.1258 24211.8853 12684.2566 48845.9527 379990521 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4188.7844 113252.0398 202803.5031 101379.4768 8403.2116 48889.0601 4873.5921 8549.287 5361.6972 8894.9098 70168.7264 13650.1839 6041.5639 6381.1415 5509.4191 5509.4191 20310.0707 9944.5066 6597.137 8405.9397 5684.7569 13709.3477 14296.8626 5650.1964 37499.3321 18726.404 13646.6045 2608.9651 15101.1845 24733.6393 3465.014 23901.1453 71915736 xyla Carbon Cycling Carbon degradation Hemicellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 37239.1157 16257.0919 15397.3134 28876.7406 44670.192 34119.4568 20867.431 33141.5948 107582.4275 65220.3825 71028.3663 24681.3613 657592.0886 76076.6684 33953.9215 53811.5584 24458.1367 24458.1367 92265.567 44312.3561 22834.8108 49011.1011 59136.7796 52916.5235 18920.4921 31307.1137 62789.2917 35339.6787 50621.2477 19600.1851 46453.0103 19851.6349 63526.5633 24647.1497 19108.2879 36213.5659 297143539 amyA Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 22117.9481 21231.245 2575.3606 2136.4016 4253.7196 72104.6675 3998.7042 5321.6592 9056.2281 9056.2281 6157.4838 3705.1546 6615.5389 4304.261 3262.665 6640.7938 2528.914 6072.8487 1855.4753 2859.0273 3469.686 2530.5792 347540297 terc Metal Homeostasis Tellurium Detoxification Pseudogulbenkiania sp. NH8B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 17407.9045 4897.2845 12819.8644 33023.2397 2858.8736 14367.1597 17920.6485 7554.1326 73461.4282 7991.1356 7487.8145 8289.8653 12691.852 12691.852 3130.4672 10863.4043 5370.0036 8820.9403 17619.8871 7981.7008 8447.335 8583.6784 8615.359 24474.9052 23295.3037 6771.5783 9043.014 6831.3554 6613.0154 13687.0495 6420.5385 11057.9084 111020274 badh Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 10786.6945 6066.9018 5567.2339 13209.2345 5415.7246 4176.7181 3736.8173 6461.8897 6012.0332 27102.735 10312.4491 172876.222 11973.5966 16106.1866 22978.8308 6579.9252 6579.9252 7530.7855 17716.3633 14749.0721 13937.7205 11857.0765 22529.929 6838.1774 5927.2771 10969.4091 10001.224 21213.5731 12024.0603 13437.5866 11598.4959 14409.5064 10976.9163 10394.861 14903.7301 377523082 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 6018.8916 2373787.8992 1760912.9191 20532.183 9398.6226 380752.9841 3986.2646 3788.8831 12210.5264 383039.3975 18021810.6552 15193.2015 9679.9524 9891.8012 5176.5149 5176.5149 689749.819 4841.078 16188.9238 4443.597 10244.0911 3149.9905 90002.18 696765.9035 21573.8831 2843.8845 400321.8703 15233.6635 442084.9023 251787920 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 6009.286 6966.7726 5579.535 4043.9645 2255.2129 5054.0193 8211.9765 2669.4274 79435.941 6492.2064 4094.6933 4930.9443 4930.9443 3890.5681 13258.7646 7318.8402 7853.1715 9392.4713 8094.4947 4326.957 3942.457 7190.6467 4571.5561 15336.2726 5208.2238 10809.1406 6048.9459 5025.4224 5388.6234 3545.1276 11022.8711 262078056 chitinase Carbon Cycling Carbon degradation Chitin Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 11168.1388 2725.0362 3842.1645 5854.811 40633.7111 4539.6014 108274.6066 8121.5334 5698.9711 14234.2484 4088.3375 4088.3375 9084.0951 8632.9139 6666.0773 7766.8529 9583.2992 8497.9181 3670.8055 6184.9742 9175.3242 3384.1672 9964.1897 7865.521 20781.0718 5121.653 3737.5094 5921.307 5911.8507 12549.8318 220718746 aln Organic Remediation Others NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 164602.6663 24127.8506 22606.4776 9056.8213 31950.6896 175877.9546 54749.5861 32714.8405 14422.4243 33523.7843 222847.2366 18818.6602 23375.5505 50465.5752 22917.8071 22917.8071 65683.4412 43840.1009 16781.6345 18320.3505 18599.8658 55939.805 14016.7697 39173.1781 33062.7827 22016.7881 71207.2129 56698.9495 27986.075 20104.3177 25730.6204 44696.3812 28874.4364 15123.4975 284032429 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 5969.6142 15924.6396 16059.6203 2729.2643 2687.9012 5703.0839 7722.1821 22226.9493 93868.8998 6599.7557 5858.1428 5620.0753 4111.2942 4111.2942 4456.8943 9542.8877 7942.5205 6971.6912 8958.576 8003.9339 2385.0741 4399.6784 12544.4526 3050.864 18953.4767 10079.546 11624.4914 5196.0381 7546.4203 5217.1534 4346.4773 6528.2564 379004945 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 224882.9158 164519.2744 188020044 ppx Phosphorus Polyphosphate degradation NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 10102.6147 5146.7347 8706.0825 3688.5396 3688.5396 17637.8654 6887.0288 120435471 terc Metal Homeostasis Tellurium Detoxification Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 4383.2743 4221.7406 14615.7128 2245.1438 3391.2102 77380811 urec Nitrogen Ammonification NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 216609.8976 142580.3877 37084.2027 62579.4058 68911.5607 199120.0928 45918.4 118291.8294 109676.5075 125142.0061 65781.7279 1121300.3938 140109.4344 103909.1423 222736.7881 162800.7058 162800.7058 45209.0051 89281.0325 95441.5837 208492.7653 102732.2574 181772.0884 39916.3569 83159.0663 72696.9738 57540.0787 116996.3642 75306.0374 116585.8627 37949.61 115378.4024 79904.013 64448.7673 903852.5389 374578414 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9538.861 16201.7831 30480.5188 8614.2621 102850.6735 8298.7934 14652.9596 10407.1485 7556.2181 5982.8941 225360.258 17640.4129 11422.5565 16901.6707 7168.6339 7168.6339 4753.6269 16391.4005 8651.8234 8010.4834 11112.1553 11315.6573 3758.9421 4992.4407 13539.5777 5810.6613 60755.518 6385.3936 8700.0879 7390.6261 18639.004 8169.0806 7493.7384 9060.2178 373280201 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 143054.2916 29926.9272 76554.4927 113577.0956 112154.192 23147.7134 84046.5901 49859.9777 35331.9899 177210.8079 147169.7572 203882.0117 2134220.3285 119106.9014 89865.9237 309359.6529 79133.8544 79133.8544 51141.0994 109389.6526 62713.1433 108579.1429 185653.5921 98441.67 52468.8864 43716.1729 111526.0836 75338.2338 214911.8881 91755.384 164807.8861 73035.1063 92212.0012 77788.4297 92950.6819 106564.4222 356607003 amyA Carbon Cycling Carbon degradation Starch Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 35476.472 84562.5531 7162.7417 21793.0286 4809.8759 61761.1919 17149.8525 21060.1334 19062.0756 39043.3653 256800.9386 14477.6147 29073.5967 28086.4362 159539.1687 159539.1687 10181.7503 30452.4547 22600.0481 25562.8632 174912.8212 134144.7824 13512.4879 15141.834 20585.5805 15818.6203 28159.8221 27721.0747 19579.5698 12131.7735 9634.1805 32076.5995 76235.2978 59255.768 76580434 terc Metal Homeostasis Tellurium Detoxification Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 907328.2196 62544.1674 1550416.8332 262729.2829 2784822.4176 318100.5419 418111.8228 525659.2859 324385.0713 354547.5642 457623.2876 385157.538 13262824.4343 662636.6908 490015.4726 638486.0584 519823.9055 519823.9055 480806.4966 287528.4042 338912.8779 940407.9076 587848.7501 552248.358 232348.3059 242763.7906 412832.9835 294534.1983 1035338.5847 377945.7949 424947.3984 347571.8631 243495.8172 362050.7513 365553.3879 1022765.9189 393702654 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 5488.9962 2614.6805 2306.643 3744.8768 4130.2904 4987.4416 2351.4399 5027.293 6960.0111 5206.1718 4737.7654 6902.7072 2730.0075 2499.9843 8881.89 4512.7391 8544.1059 1988.449 9279.4007 3737.6227 5891.9159 119384611 FBPase Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 18882.0017 16048.3005 18449.4695 4189.3194 33490.7315 9837.762 12271.2758 22646.7326 11319.5265 477503.0903 13333.5976 20724.6387 25164.9982 14511.1776 14511.1776 7713.1147 26743.4372 21983.8914 19956.707 17650.3238 11632.9161 10398.1813 10849.1753 12445.3569 31354.7973 240930.9543 16005.0157 28515.2747 11681.3469 15426.9517 17461.1194 19470.0226 26428.615 255505529 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 4456.5892 7624.8531 2601.7247 2853.3895 3258.3753 3157.4933 66707.3441 7099.0843 4378.7249 9292.2899 8857.0037 23194.806 2470.3118 10134.0172 3329.2135 3866.0428 14146.5587 2608.2543 229313593 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus LMS2-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 5943.0518 11020.586 11741.0362 2669.2447 6185.4455 3702.3631 12401.8181 7165.1623 2662.1079 4335.5151 2578.0891 88062456 dsra Sulfur sulfite reduction NA uncultured Desulfohalobiaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 34586.9948 11215.6224 30785.0046 36575.1799 28968.8236 11954.4327 21644.9785 44441.5745 67849.2753 561778.006 31028.4213 181175.4902 484050.0961 49801.8626 60403.0567 35474.1908 24954.0875 24954.0875 28749.653 64665.5415 31681.8988 112042.708 60783.8238 93418.8572 83844.6853 22113.221 49727.5328 24251.3754 68636.9992 30295.7303 48801.2673 37742.3501 21853.798 39870.0077 38863.9948 95984.9859 326199167 arsc Metal Homeostasis Arsenic Detoxification Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 78417.6026 44570.0419 61365.6443 71284.9881 34028.6938 47703.7839 29173.5591 141925.0921 56680.6219 34829.9322 93697.6639 109491.5155 818190.1013 66494.6452 83748.1155 78534.3249 82165.5904 82165.5904 33986.9496 111758.1586 95054.4801 195478.1938 115081.8268 273480.597 44488.9095 53864.0736 394219.3646 70365.9951 152882.6076 58065.866 135769.1427 94444.856 84742.3645 66471.7099 57600.2288 53099.7576 295799325 cysJ Sulfur Reduction NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 19512.559 11941.0587 28070.5342 4536.116 9581.1265 10279.3095 16313.8572 7366.4354 24018.3882 14120.0295 142011.2089 20647.5868 20529.6853 29860.7427 14703.9065 14703.9065 10846.8364 21064.8931 8959.3009 16160.864 13273.6715 9732.7378 8958.1113 9624.3383 14511.4644 10886.6829 31008.5487 17732.088 15801.5119 6292.9787 16836.5187 33918.4994 5058.8168 71560.5979 110672112 xylg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. PHS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 12985.7378 8549.1652 9867.9627 26298.7471 12071.7889 19058.1509 29510.7999 9563.2823 11274.4346 27848.4031 11547.1031 221705.5946 14358.4341 193481.4712 35399.7368 19383.5997 19383.5997 8574.6467 17638.1125 13917.1983 74881.0809 17025.7133 13261.2276 6480.0547 7735.8185 15054.6269 12211.3156 24910.7547 13070.4416 20140.1596 7968.1531 12743.738 23880.076 7999.2771 45918.2581 32397025 nrfa Nitrogen Dissimilatory N reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 22347.8444 90957.2189 42792.2989 16612.7952 12611.688 10970.2983 7879.376 14362.2924 17722.5073 20181.9435 10673.1966 263135.4264 21444.5571 14265.0538 51510.5111 7239.401 7239.401 11665.0938 29619.7839 13340.9864 10103.6494 14360.0857 14287.3127 11403.9357 8621.9604 22163.5661 8276.5481 26117.1453 14153.1047 17342.7775 8800.3219 25625.4237 13832.8157 10272.2115 12261.5375 363539229 B_lactamase_A Virulence Antibiotic resistance Degradation Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 72773.6747 11173.3463 23169.3957 9024.138 18716.153 20085.0463 11556.4087 13235.9051 13279.9748 7094.085 244919.9467 13029.5476 12194.7177 10516.139 8382.9459 8382.9459 6527.2585 19079.9203 13790.8007 12577.8556 15542.8603 24535.132 6112.5335 7197.4197 13408.8733 6222.7932 37853.0707 7394.8312 20422.8127 10757.6216 9432.5235 9524.3336 6573.6922 21185.278 398238627 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3668.4854 2076.2333 4329.7878 24341.5066 5837.0943 3375.0763 8437.2363 7812.4215 7812.4215 12092.214 5447.0336 4394.2445 4672.2886 5634.9188 4904.0528 4794.6809 5413.0596 5913.5141 13506822 pcpA Organic Remediation Sphingomonas sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7755.3671 2896.6817 3673.7857 2431.2485 5360.0209 9489.7383 5238.4659 284620.7957 9560.177 10940.1331 10940.1331 6848.1023 7263.4976 6683.639 5241.4369 15129.0531 3136.3686 3106.7607 12290.9341 6371.3833 8613.1776 3116.1352 4410.2538 5621.2347 5879.1364 83943572 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 27837.4602 263475.7843 68297.347 5142.8193 27163.5842 8897.6652 9862.7903 8690.0413 10968.6903 22354.8813 85228.2491 13848.125 7862.898 16439.6492 9664.147 9664.147 8200.6101 14462.7421 11137.9272 10648.6643 12829.1408 9928.9083 6122.8869 6380.0735 11497.4211 17836.443 64658.0247 13045.6186 12457.893 4362.4548 12603.5115 14910.5988 6845.7286 9188.1445 357426045 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 318598.8009 132248.9643 19572.0029 26030.0797 1948162.9074 174093.4851 428033.7345 120578.1425 35435.4284 176992.356 364336.401 1020323.8908 36909.2371 153164.3261 336716.7408 165102.2004 165102.2004 100081.8942 178094.6235 52476.528 251255.3747 165069.0872 126219.9831 134054.2402 88217.1222 603928.7319 158202.8034 336841.5934 193715.2106 514097.6169 263325.0337 173225.9848 213176.4595 67420.4501 454479.1599 302665610 Sir Sulfur sulfite reduction NA Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 26905.8954 28898.9823 65134.7791 4933.6849 7293.2977 6314.9811 4457.1959 11426.6297 8499.3813 4901.124 306456.6862 12877.1256 10070.1819 4520.0218 5422.2905 5422.2905 5936.2848 16152.1183 13161.4468 14602.7867 14926.7169 6351.1391 6123.8849 11187.0157 12191.4527 6179.8129 16473.0405 9349.8365 15420.7023 7701.7683 11943.6507 7109.2215 5498.323 18911.9794 119384020 tktA Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 102260.5088 10764.0789 40556.7432 27508.3113 5170.4839 6226.2838 6396.2942 9330.2926 23034.8519 49108.3304 24297.7196 1766503.1835 16560.4056 18030.1388 12600.9124 14683.963 14683.963 8598.469 34844.3014 16093.4257 23023.6484 105406.5422 12456.7352 14440.502 21860.971 18846.6341 11074.6589 38957.3326 17573.4817 41133.7034 8149.7513 18544.6024 19602.7903 19179.8267 333747.9354 299525181 PRI Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 37533.189 19302.187 20853.3176 23910.8061 7863.2581 32536.822 18026.7691 19368.8283 20555.8705 34002.4271 18309.8229 495347.8547 33159.2933 231683.1559 28981.8752 16505.2998 16505.2998 20240.6715 47772.2647 30054.8012 27184.0887 60222.6287 41896.7372 19904.9731 22671.4833 38393.204 17432.257 84579.4036 39851.5702 40961.4258 19368.7599 21216.5031 31783.947 17235.9534 43619.4057 15217139 amyA Carbon Cycling Carbon degradation Starch Lactobacillus sakei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 4941.038 3817.5404 3730.0695 72552.9729 5156.3732 3290.0374 10924.8533 6271.6748 5421.5608 5867.9176 2619.0316 6167.4979 2953.5298 4038.991 2612.1195 375081626 phytase Phosphorus Phytic acid hydrolysis NA Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 31317.08 30298.2627 10010.0503 5606.0185 37872.7632 20179.3843 11834.3057 18991.9956 13209.7471 269991.3348 251337.5006 11723.4079 45219.3257 14448.9171 14448.9171 12760.1861 25028.0759 12151.8208 10448.5629 20979.9544 40139.9438 10526.297 22734.4361 20413.7739 9630.7779 42004.9597 16992.9287 66651.4562 26531.2028 23021.5632 15090.4746 22596.1855 43070.9415 292648066 cda Carbon Cycling Carbon degradation Starch Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 21782.4726 17649.5527 6997.5476 13837.146 13917.502 6531.4731 8701.5972 7824.3441 10909.1574 14467.9285 6373.5033 468058.9733 38048.9058 20862.3162 21253.9296 18119.5451 18119.5451 12784.9592 36796.0346 18449.3557 19674.4952 28920.1099 33832.5261 10780.9637 10066.9343 24265.3293 13131.3171 46105.6303 4088.6642 22800.8931 10066.0489 14581.4573 17580.4551 10278.715 26170.056 334117336 cda Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 3846.4144 6506.1881 3155.0083 5346.8128 5416.6006 4151.8556 4511.274 4125.3298 135914.4893 6411.7565 9632.3436 4328.3271 2573.5691 2573.5691 3760.2034 12563.5746 11664.8965 4684.7123 8617.4837 9219.4223 4014.8037 3630.1466 10598.1635 3659.4492 15050.0614 9318.5463 8118.7689 5351.3156 5783.0576 5832.9473 4289.2609 8034.0205 186476301 ben_bcla virulence NA NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 28239.734 7138.7765 8325.1792 4220.8591 8217.4763 5806.3131 7355.0579 15019.5003 23295.3358 164511.7412 20514.6171 34637.6287 130429.7492 15916.4628 15916.4628 61279.6882 26651.005 12728.451 9684.3199 24101.5964 11817.4484 13134.8291 14683.3342 22942.0441 10075.2988 83857.097 22724.7583 23490.037 18250.3501 12704.8353 32324.2549 102162.5129 61533.0265 212525994 axe Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 6593.7018 7267.0129 4984.2477 7029.7172 5808.8822 3438.0561 7886.6878 9730.9555 8022.3528 309763.1404 12022.7811 7874.0033 8619.5192 2931.2685 2931.2685 5199.7413 10185.1265 10791.9056 7485.5609 9917.0895 11017.7199 5307.5073 5788.8033 14316.1632 7208.9016 16854.6983 9826.3307 13953.6274 4558.7996 6175.2553 6193.4679 6210.1252 9823.4064 74318642 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7538.54 12746.9822 15238.2676 4316.5674 4927.1094 3993.9455 10446.3073 12594.0373 8426.8609 146839.1409 5174.4388 7853.2124 6560.0967 3725.7612 3725.7612 5177.6257 11298.5707 13791.4483 9823.982 9747.5212 16995.2179 4566.893 4124.5765 11336.1791 4029.8158 67663.478 16927.2906 12744.5343 3621.2052 6359.9131 7543.447 4120.5856 7991.572 407690231 badh Organic Remediation Aromatics Other aromatics Sinorhizobium meliloti Rm41 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 214234.4154 30098.736 24692.3464 1390330.098 31643.7655 12444.9672 33072.7966 346606.325 18376.9252 43659.6336 32662.3498 46606.2464 1036226.8199 45705.7182 61802.4798 44265.1018 26481.6162 26481.6162 24501.8348 48448.3557 35194.0993 98626.0308 93101.058 70698.5939 109870.6676 30035.0717 921516.4358 148419.8774 71099.2239 218836.4978 38859.5865 25042.5173 26505.6681 42434.5141 347278.3964 685776.4606 26278696 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4966.7767 2583.0682 8942.0849 8942.0849 12085.2786 12255.5541 5444.7475 4307.5578 254430590 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 12938.0317 316678.8371 51511.6427 58050.9942 5582.6099 2462.5175 12485.8309 15249.7337 3687.5743 15583.9193 12852.1586 273772.8591 23252.7382 18098.2769 11034.7225 20563.1318 20563.1318 7505.704 17695.0069 11565.0734 26783.9473 29201.6165 13108.9617 10645.3798 14727.2011 29809.2295 11168.2012 25759.9325 22998.5228 18922.1898 5241.3838 55929.8776 11534.5885 5711.0662 11076.3342 119374419 pgk Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 18585.6267 12575.5187 18982.1352 18325.0999 9903.4746 19453.9572 14791.2942 25587.8509 16412.2624 37025.7198 18620.8549 212905.1217 20136.0887 19178.0194 15039.4701 35033.8951 35033.8951 19632.4229 35666.1657 13862.9971 20016.5885 42029.0557 11413.2373 11001.3179 11373.6886 22187.7976 12973.6485 47864.3619 11265.7222 25458.888 29665.5603 14942.5502 65094.1153 13857.0169 24232.3747 16263147 norb Nitrogen Denitrification NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 14296.4668 5373.22 7366.4897 25445.1097 7823.1398 4095.4482 6893.5165 13113.9296 7388.6742 18222.2973 37935.2305 240085.3383 19620.5439 21271.6244 14238.8977 12675.9299 12675.9299 7582.5324 20744.3217 11428.3246 11668.8263 10578.1316 9685.0736 6870.6407 6688.0845 16854.2144 8172.8104 36846.1934 16756.1532 17318.9078 4939.2984 12129.0823 9974.4304 3449.3215 5781.2694 302383233 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 8987.5489 5448.4534 2628.8662 5376.7371 8118.7 10260.418 3912.0726 3291.1945 4538.7581 2155.8897 2155.8897 7923.5175 4850.7347 4926.9806 3699.6119 11876.204 7366.0175 2278.8374 9047.8022 4255.7137 6018.2151 2183.0398 4598.0098 5879.4946 2377.9817 4726.1025 76057545 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 923477.742 96202.5231 267961.7421 164402.9526 792222.12 827284.2405 185276.9603 652859.1679 405414.0603 327423.7152 347658.6721 300673.6987 5058977.4799 482600.4401 359192.4671 526468.4099 348533.1077 348533.1077 387078.4437 406133.6322 323869.7465 781735.4075 499817.2574 623592.7504 217965.3636 334099.232 315513.1279 304416.6124 595866.6951 457459.946 389413.6004 176848.6088 258397.4325 296491.9407 200060.7798 702012.3967 34483462 nifh Nitrogen Nitrogen fixation NA Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 18151.9857 14006.4621 16243.4904 18459.4354 37460.54 5322.671 5151.7716 9098.154 8835.9713 12954.7577 18280.96 217724.3089 12648.9331 11237.8273 14919.945 10706.8608 10706.8608 5970.5521 15315.4489 12632.1664 40046.3274 16496.0567 15392.2394 38390.9505 6679.6096 11481.6071 6657.8037 39874.1194 7806.0868 18985.8684 5641.4476 11853.056 12334.9795 7238.8083 30040.58 283811139 cellobiase Carbon Cycling Carbon degradation Cellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 19589.9708 9824.9031 5980.7869 8006.255 6859.2041 11055.395 11488.3936 285859.225 18699.4038 67974.874 176763.4645 33038.9828 42620.0991 31874.2871 27491.8825 27491.8825 14564.2925 17350.803 12148.2377 19405.5968 27851.0886 17143.2891 55320.4962 12850.7113 10833.2656 20274.7687 40490.3547 18532.9945 13876.1848 21022.206 11099.6477 18698.1129 8523.3925 62274.6559 292675836 catb Organic Remediation Aromatics BTEX and related aromatics Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 8171.6431 89612.3656 8605.039 5596.2529 2277.7243 3959.473 5829.4288 11041.059 110962.1864 4972.1752 10562.0738 6179.5386 3301.3532 3301.3532 3176.0428 10703.8558 6650.2244 5966.0527 6311.208 5756.6736 3502.8358 3912.0649 14315.4259 4114.8398 73962.7903 4219.1517 11765.6588 6544.5867 5100.3075 40604.0033 4828.0621 5182.1612 229455206 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 9_1_42FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5982.2858 5036.635 8190.6758 5906.1638 5054.3809 3355.6901 5900.6248 6163.294 16858.5264 140104.1261 7065.4317 6507.875 3366.6634 3366.6634 3787.1096 10555.971 7876.1826 5669.9524 8840.8974 9380.6911 3384.4423 3878.2324 9226.0643 4931.2224 24035.3191 67759.6805 8548.3835 3944.1567 4223.5738 5870.6471 3345.5427 9926.1411 119116114 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 14505.9903 40430.8531 27033.1855 6509.1898 41995.3961 9302.1519 4011.9282 17744.4991 34209.1991 18772.3975 17921.1104 17565.4547 882137.6031 27179.9806 27949.3222 22120.623 20141.0738 20141.0738 14201.2585 39886.0111 13973.6287 11383.8963 70802.9704 16871.2219 13447.2182 22009.652 42064.3295 29820.9861 52809.8098 14756.436 22232.7654 14343.024 17615.9019 33793.2341 41243.5823 14374.35 296170382 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 12357.1773 3931.8238 16878.0007 2530.7703 3562.7612 4165.5877 6021.961 90798.3744 135654.2539 4945.752 6071.3125 4920.1698 2931.2249 2931.2249 5538.2603 11305.7921 11627.918 6980.8385 18239.2571 8515.6539 3619.6016 4232.2646 12006.1891 2917.9611 19074.4808 12481.5183 12444.1075 4440.8709 6028.614 7780.8534 3558.3521 8540.6488 284039635 xylanase Carbon Cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7260.5506 270615.7935 8898.6712 15677.2179 8775.7813 3719.4108 26725.938 7146.6513 12832.9673 3498.4668 265687.8909 10706.3431 14927.0668 9451.5529 8916.9512 8916.9512 5810.587 10022.4265 11579.6806 5733.8102 8202.6166 175776.1302 2546.8608 5438.7851 13118.9622 6326.4466 23680.3489 8416.552 11981.7003 3322.0023 6531.1739 11666.1223 3127.5332 11157.8965 227937723 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured Alkaliphilus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus; 15205.8535 15841.706 14070.9441 11320.1759 9605.6934 14861.9388 12356.4704 9295.1571 10134.837 14648.9429 7121.1664 296807.1405 15513.6349 17209.0255 11201.6289 11846.2235 11846.2235 11820.3382 28039.21 18851.3215 8521.4804 19448.1812 11037.2293 7293.745 9466.8552 19416.498 11000.8101 33786.5393 14053.6074 19647.2628 24581.4901 8990.4235 16478.4279 15819.8692 17501.2267 375310130 ppx Phosphorus Polyphosphate degradation NA Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5858.999 7178.2671 392421197 arylest Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 335035.3049 33875.7613 251459.7183 1590233.3374 104062.571 675201.5464 575522.7884 419340.7959 166870.6081 173282.5395 236365.4288 242386.8011 5880652.1716 198201.737 178687.1915 571806.07 383326.2241 383326.2241 187618.6283 387845.5977 200059.1944 204017.6717 337845.393 278814.276 179964.2264 286713.6673 234758.385 214668.1139 649358.971 187902.3008 250712.1087 230210.1713 208006.074 239244.3862 321779.6084 1070073.9635 290472025 cmci Organic Remediation Aromatics Other aromatics Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 15241.2134 5376.543 5712.347 12204.7433 3512.3176 4772.1925 3821.5615 5385.0974 6927.6982 7768.4012 288446.8673 6819.3983 5664.193 6463.6448 6846.9657 6846.9657 5813.6046 12362.0412 5568.4772 13072.5466 11076.3593 8963.1615 7523.751 3972.4903 10985.5443 4100.1778 13241.8541 12571.124 10689.2788 3093.4892 8300.9566 10470.0769 4555.5023 11861.4408 365270372 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 30048.0332 10886.0544 9060.4042 10733.5393 6272.8768 12370.9255 10033.7472 5519.7725 10475.4993 16506.3521 14282.0052 175987.8923 11792.5179 22841.4514 11713.2652 6739.4928 6739.4928 6428.008 34863.9043 16943.6698 15077.7077 37545.4215 30159.4205 11475.2775 14097.3637 17436.4628 64235.5641 29133.5245 16292.4476 18333.6038 5997.9952 10159.2395 42115.6731 8493.5246 23222.0734 356665107 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 10802.4661 310567.9065 3130.0423 3803.8554 4327.789 6419.8747 17322.1235 103798.5373 3739.1983 5693.6327 15949.9229 15949.9229 3286.4914 7724.656 5827.4571 6745.5143 5632.5991 10890.964 4030.4581 12276.576 12677.2551 14352.8953 16592.3858 5575.3448 3273.7246 3624.6781 3600.1568 6504.6971 156043008 endochitinase Carbon Cycling Carbon degradation Chitin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4338.3422 7114.1228 3598.6894 85832.5146 2996.7896 3326.0513 5056.7862 2424.5082 84852.7232 3633.0758 5385.0988 16409.5432 16409.5432 5677.6867 10778.3695 4606.7779 12480.3115 9944.0392 7645.1006 3259.3133 4658.6758 8253.945 2325.6735 10486.3767 5007.8752 10397.2202 9344.5133 4590.6192 3634.2613 28605.5593 8502.2618 46307986 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 81249.9845 34641.6796 49781.625 70421.3446 68953.6835 43752.8547 62433.5371 62266.6605 31294.9381 75155.8528 47397.5065 141271.7873 1098615.4431 92035.3072 65697.3858 48022.7785 33269.3191 33269.3191 30055.4256 77471.2025 40098.9379 230473.8115 43511.3952 84270.0645 115469.4617 97365.2502 71434.229 49368.5888 132360.1815 43971.3793 241693.1983 28219.2363 123130.1472 37257.3972 28926.9053 78991.8185 315001898 aoxb Metal Homeostasis Arsenic Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4343.19 12503.917 2720.8332 3942.2567 2167.7226 6286.7524 3705.0614 2671.892 89574.2631 6105.9201 4812.5085 10489.0679 10489.0679 3066.9837 7722.2453 4237.3265 63512.8646 8891.5738 4787.1789 2783.5263 3446.253 7570.6443 2591.8109 20272.2854 35922.411 8183.9103 2532.1306 5845.5517 4580.0637 2551.6532 9509.7769 145320514 ppx Phosphorus Polyphosphate degradation NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 69012.6937 24031.962 25450.9479 13462.6232 17579.3742 352127.513 108031.9943 66189.1395 87580.4702 15685.2726 15608.1551 15995.8415 526669.1105 19032.5626 36122.8991 21905.8204 19291.0149 19291.0149 10501.7688 35595.6614 13415.4743 100619.4207 32571.6593 24351.8925 14721.135 32033.2656 20685.2384 14651.1986 40420.4165 21484.5004 23480.583 11648.2576 16597.7191 14379.1957 13227.5482 24213.3316 296023004 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 260642.1113 70306.2303 118522.5025 140956.9727 255071.6556 138675.522 331845.27 594290.513 246172.9799 87341.4835 80447.5691 109541.865 2991712.9244 116748.5175 270471.6995 134988.8706 144554.109 144554.109 123048.3498 142772.2379 67067.3142 197458.8296 187299.6287 117712.7084 71215.8397 107295.5989 118672.5705 149585.6763 212471.7446 150772.0893 144707.8012 88251.0005 98623.5453 137029.1065 90898.668 357688.7746 146404225 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 178891.7974 2190699.2132 39887.6379 103921.1443 54894.7763 52619.6229 132291.6861 86441.8773 232838.5532 102430.1939 91057.5206 1783952.2729 188195.689 85913.2179 286607.5522 208017.4511 208017.4511 82157.0802 205574.0235 76279.1561 494995.3798 226879.1728 314168.2548 98985.4975 92517.1652 97213.0422 73823.8366 1028906.1245 216511.3498 100507.2779 76929.5098 100925.6589 98086.0012 127241.1437 333436.8782 372012126 Sir Sulfur sulfite reduction NA Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 48667.4357 20677.2175 50679.856 19991.2509 60396.3253 9518.9025 63017.2896 40222.2315 18701.5962 31332.1316 50160.621 146404.1333 562572.801 71915.8164 61879.1495 118548.6501 33380.3953 33380.3953 30393.4987 76026.5234 28104.5116 69686.1143 55973.7039 34798.2675 26082.5626 33604.8509 50160.8991 56974.4579 96019.6634 85456.3845 62230.7028 20830.1038 38348.317 30745.4236 23771.8983 46905.8596 295900224 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 220609.6971 21602.8538 67948.4775 88591.0151 141164.6127 64827.6967 73115.4192 85072.9409 81029.1712 128979.4632 323897.8837 166294.3141 1816298.5339 819605.5017 89271.5512 189253.7019 115419.9802 115419.9802 54793.9705 112254.4902 62170.8886 228202.6357 183512.7135 227727.7731 115406.3299 97269.215 120426.7779 91217.6063 202011.1527 193593.9119 176601.1841 68376.0187 96974.632 171414.6727 84261.2269 279158.2734 74038294 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7379.4077 2315.953 4486.7318 9140.6865 13313.7924 5035.3434 6432.3905 2249.3735 2249.3735 6533.0143 86834.5856 5431.6685 3423.2404 10543.992 3469.3529 2708.0345 3185.7905 4361.5149 16611903 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosospira sp. 40KI superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 8873.0073 7999.5304 13059.1858 42427.0188 88647.9063 3123.1741 8716.074 8045.2053 8525.2944 165467.7455 6855.9418 12165.0185 12253.8827 9716.213 9716.213 2670.9581 13106.6925 12031.0801 15867.5868 32507.7515 11318.4654 14393.8818 4969.5785 7181.5579 7197.7574 34701.7794 15987.0952 12976.6205 3493.8547 16581.6243 19059.3973 7697.9218 29705.1751 264677490 bphd Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 10224.8569 4969.9866 5603.1231 2601.3284 2115.7222 4162.6082 5984.6479 7650.8099 3442.9327 92885.6942 6864.9526 9927.6651 11467.1404 3996.2803 3996.2803 9142.5053 13582.3354 8677.3304 8479.104 9511.1876 13077.2122 7112.4124 5358.917 9259.155 2591.5367 11843.2 5281.8893 7544.4013 4295.2971 5295.4733 5431.949 3383.0922 26114.117 383781672 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 6261.158 13101.5676 7769.7568 7702.2616 5295.7239 5075.4984 5942.444 8952.5787 9670.1657 5203.8111 232989.5012 4739.2082 8334.5097 13032.1782 4536.1974 4536.1974 6222.1845 11720.2374 8462.5933 4409.1079 14202.4305 6326.9626 3553.0272 10906.5646 21856.689 5154.9167 10919.9044 14576.2772 21517.4486 6752.2547 4666.6353 21787.1461 2089.1102 89099809 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6077.9316 11778.0871 4238.9736 3593.3526 5117.7562 7436.4686 111879.1456 6284.2397 3642.1749 9423.4115 6701.9901 6123.1195 5408.3585 2180.8867 3250.5743 11129.716 2409.3777 16041.833 5925.482 8723.2854 3927.6059 5877.2368 5377.5404 2381.4592 8788.5907 40787206 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 86235.551 39709.6563 42909.9134 20798.5723 16762.8407 12520.0523 25833.6506 10373.3428 181739.2893 42374.9042 29855.7368 566850.2909 24906.7075 26175.3032 34299.6146 30624.3466 30624.3466 15641.387 33089.3974 18975.9619 21340.7902 21788.9302 1045396.1736 11365.7661 43802.2473 25473.3142 37246.2341 65373.5948 15614.2029 25087.0239 11952.8801 18763.236 22306.8518 10807.5638 34806.7404 329847348 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 17003.6254 6020.585 8832.8557 14821.2358 9214.3798 5812.367 25018.6505 25628.0741 11010.3562 9494.6034 246274.8516 10063.4774 9548.1083 8196.4795 4432.694 4432.694 8816.8168 16835.1846 13396.977 13026.239 22965.4923 15721.9155 10657.96 11577.2817 22251.8064 24352.4048 23662.7395 17368.5772 16732.9467 5825.0027 12199.8143 21568.6622 26129.4102 10082.2826 1679595 exoglucanase Carbon Cycling Carbon degradation Cellulose Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 5098.4403 3001.1585 3180.6081 2331.2736 4152.0562 2977.3124 129645.9446 3890.346 2715.5801 2715.5801 2820.2022 5439.9597 5102.5713 3572.1956 4304.6446 4229.8663 2329.1873 2884.4346 6508.2153 10039.2001 6284.7263 3165.5878 3951.8774 7974.5044 299749055 badh Organic Remediation Aromatics Other aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 10814.9009 8820.2628 11737.5443 20108.8468 7926.7327 6496.8186 5485.8262 10004.5313 9530.9222 5302.0808 185220.288 14609.7587 10195.9168 8995.1881 5446.5734 5446.5734 8231.9418 17468.2534 12848.7606 11499.8297 12977.6241 20095.7561 6306.6979 6219.6032 14345.5704 6807.1036 21796.6699 8538.6623 14279.017 7204.5941 7970.6934 8198.0196 6385.4621 17813.4381 153281 amyA Carbon Cycling Carbon degradation Starch Streptomyces aureofaciens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 21696.2905 6262.8974 5086.1733 3404.0769 4934.3391 11284.2206 13281.5433 13281.5433 4275.5712 9302.5395 5041.3434 4175.9705 9734.5483 2514.8178 15477.686 11865.2461 8118.5801 8983.0972 3350.9983 13071.9172 55831.7307 373875342 amyA Carbon Cycling Carbon degradation Starch Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 6258.587 18998.4438 6377.842 24374.8598 4780.6279 3612.5518 3031.9844 6354.9774 3248.7856 159361.3918 4887.0681 4020.4222 5421.5892 6454.5999 6454.5999 6921.4651 7270.0072 2887.9589 15985.6258 3535.5291 10403.8269 11678.7304 9066.1419 2986.7909 3568.9841 2800.892 2477.5068 5042.9857 297191743 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 15810.3788 6906.474 4992.6752 12682.6157 6018.7666 8467.4433 5619.262 9076.2302 14610.4125 5996.1689 214561.584 12636.8607 12635.2931 10315.0135 5331.4305 5331.4305 8006.4232 18941.5033 15671.8475 13147.7578 15996.8568 16112.7295 6586.6077 6835.0636 14558.8648 6664.2147 36348.7401 10201.5393 16485.5344 67990.7389 10032.506 15101.2024 7933.507 12453.6506 84668568 hbh Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 12065.2112 6277.3316 5614.8929 9568.872 6443.5506 9437.4469 5305.0908 7715.6717 9463.1302 4570.4452 221492.1031 12720.4488 9994.4417 5240.6482 5287.2069 5287.2069 29258.6987 15609.2004 8088.1013 21821.6755 12472.9615 21476.1698 7066.383 5573.3002 11273.9779 5630.2439 18735.6032 4665.6397 12349.8112 5926.9891 11437.8774 8899.6336 8323.5656 12721.6457 357601159 amyA Carbon Cycling Carbon degradation Starch Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 11761.4329 17999.7939 8468.1984 14592.2867 6678.2425 9761.4929 32387.6638 8782.8998 9700.9602 7911.342 4962703.1303 10758.0745 15139.1121 15379.1628 6537.0663 6537.0663 6114.5808 12894.192 67783.1147 17737.4779 17975.727 13691.5862 4069.2616 14867.1092 16116.3573 7414.1392 24426.6272 179947.931 16046.3832 5555.261 7958.2755 8455.8867 5251.1337 9757.6555 50541803 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27372.4108 20287.6839 9917.4405 202261.3578 48495.2375 10779.5487 6708.319 12254.2478 5281.3639 13765.9201 16711.3092 34611.3149 384437.3727 38935.819 18752.1476 16748.2153 13801.3188 13801.3188 15562.1724 19773.3066 17495.4771 53994.9194 26756.0701 20025.4847 12103.486 13058.873 57599.9639 9381.8139 47239.5698 17340.3184 22129.0912 8376.7709 139511.3207 25570.2986 6356.3168 14566.7334 284015127 dehh109 Organic Remediation Chlorinated solvents NA Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 16474.0866 2921.7225 27962.3065 3554.6187 1916.9973 308227452 tktA Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 80102.4544 60323.4037 63810.9323 68765.778 20350.4831 53257.1239 83042.9233 53711.7641 47428.641 68463.9665 69933.9345 2467505.5001 122999.3594 103757.7261 96338.0115 131895.5387 131895.5387 122445.7627 165802.9861 61389.8109 91783.3248 126001.1104 102835.0803 101437.4736 48126.8658 88264.4807 130232.2073 790081.3609 139267.1961 128111.2406 46756.667 68912.8111 74891.342 73653.4449 70207.6267 77966700 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 34508.7915 19001.9506 37211.6421 24510.4213 15742.4567 31982.1626 44022.3411 47637.4348 23128.2239 39103.9338 33386.4829 624411.6224 34567.4812 43799.8637 62885.8821 48030.7006 48030.7006 18387.3859 62415.7561 34594.7514 39665.1044 45695.3345 69988.7545 26716.2501 19450.7921 50970.3135 42068.2002 95266.1813 205026.9995 48208.3987 40356.9745 28250.7132 27865.6546 22790.5737 62413.8764 152992577 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 5149.2563 8090.1424 4310.2269 4387.8913 2620.561 2548.0397 3744.6339 4506.6948 5803.496 8651.5341 8651.5341 4176.8295 10169.8429 3896.2505 3918.2807 6404.5325 4182.9293 2862.4166 3275.031 6709.563 2772.9381 13904.8367 10739.1743 2101.8577 2878.6437 5721.0686 344035304 mer Metal Homeostasis Mercury Detoxification Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 17863.648 9879.5753 5828.434 7271.9851 3963.8005 98915.4754 4097.1898 7687.7693 2630.8654 2630.8654 52315.801 18023.5922 4387.6643 6225.7952 4806.9158 6461.1659 2329.13 8213.3933 6221.8134 3392.4508 8306.7826 5953.8442 5509.1958 2106.5102 6640.1731 9902.79 5035.4222 209536735 cellobiase Carbon Cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4886.2777 2447.197 5205.3943 58391.1781 3725.2189 3439.731 11043.7312 1876.6088 1876.6088 3446.4595 5337.06 4318.4021 3860.2024 5504.7057 4184.124 3033.2474 2282.5669 5479.289 2541.9481 13759.4741 7023.6861 6917.8177 3252.6837 2948.2977 3690.1569 15698.3003 5449.1135 60326804 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6321.7968 3631.2184 4560.5103 7102.0022 10694.3008 4933.0551 13305.0383 7480.779 4518.1242 2732.3696 5958.6087 301155255 ppx Phosphorus Polyphosphate degradation NA Haemophilus parainfluenzae T3T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 13179.4636 3134.9336 3274.437 3378.6899 12104.7738 3005.3913 97647.4677 4453.8058 4797.0767 3718.6966 9085.1275 7360.9335 218525.1762 8714.287 5457.6403 7138.9348 3841.4609 12764.4764 6882.2247 8901.1443 2771.6403 4505.622 6560.6532 2836.8529 7430.8929 60476245 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11336.7159 9862.3525 14169.1772 16941.5015 5316.7759 5823.736 33021.4164 3785.2867 6752.2303 11757.7972 44648.672 268214.3529 11524.4748 10935.8433 8177.5611 13700.8353 13700.8353 10016.8527 18479.2683 15190.0639 15891.2315 19249.0954 18596.7344 8279.0284 9937.1249 13710.0019 41071.6681 132486.8352 13524.4585 13616.3092 8318.7523 7080.042 36491.421 7294.089 9905.3508 301104619 gdh Nitrogen Ammonification NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 11832.3918 2166.4938 2201.6809 4344.5033 8044.4165 2537.3252 9289.5822 7904.5009 2503.5548 302200708 cmua Organic Remediation Chlorinated solvents NA Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 145040.3645 3084.8538 24152.736 5507.0047 7539.3963 188025.3638 4248.2416 7656.7163 4868.2951 2769.7182 2769.7182 14288.5626 9504.4344 5213.2993 6563.9837 6040.35 5482.8156 7039.4597 4190.2128 14566.0856 5903.0063 10291.1851 2488.8222 8658.0209 5408.3277 5313.6108 54440.5773 158329959 hbh Organic Remediation Aromatics BTEX and related aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 15399.6997 11865.53605 31377.2786 27952.25 8521.8538 9837.57865 3650.5622 3072.6528 5222.78895 2549.271 106077.1676 4283.9637 5641.9908 13493.4512 5283.3816 5283.3816 4371.54775 8904.37265 5395.17645 3498.9877 3977.47985 12830.4638 2354.5468 15279.8737 9437.20805 10271.3231 3252.3474 4671.2241 17100.83385 2775.4745 340346913 rgl Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 49371.1349 22292.3249 31717.2566 90763.9087 19093.0482 11256.3814 22978.289 11942.7095 27717.3228 25790.2353 51456.0815 826541.5878 77862.6546 39410.743 55647.9402 42207.6335 42207.6335 15143.6662 36833.3401 21585.6369 156182.8225 41088.138 20030.2921 53452.9795 26506.4517 34107.7787 24523.1196 43319.0729 76693.0856 30605.1811 9244.7686 40178.7485 27719.7671 21157.4305 39365.8964 385843022 catechol Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone 12CTD superkingdom:Bacteria; 11644.1991 7265.946 29483.3324 7708.1499 3289.2516 33385.0989 9457.8321 19803.8243 29944.1827 54321.611 159299.3878 11176.9314 9840.9456 25083.4647 19978.6841 19978.6841 8905.5224 27012.81 14819.8866 20236.9508 7445.6639 24937.6805 43070.7676 14854.3571 25216.3215 21823.8278 45660.7882 16290.8229 18354.5489 14048.6718 10561.2661 13777.821 18865.5873 66123.4095 99083259 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9277.5429 9482.8502 6554.658 15651.4944 5007.9095 9992.3468 42724.5676 15027.6481 180087.6646 17766.3466 12721.2146 9064.4477 8459.3677 8459.3677 4723.0632 17736.5099 5852.7545 6648.763 22238.5354 28645.6413 4829.9971 6106.9289 15504.6941 12035.8897 29175.2457 11923.2728 14931.4095 5653.3104 7197.6278 7463.3456 7979.0447 7649.79 347526770 ppx Phosphorus Polyphosphate degradation NA Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7007.2776 6427.7701 3370.3866 7538.4294 2475.9653 36330.5987 8028.9712 13786.2996 177825.044 10002.2219 47131.274 4850.4831 10131.5885 10131.5885 5462.2153 7689.1998 11217.9091 9565.0317 7293.1563 5695.8916 7633.3653 8227.1263 13235.1847 31839.541 8049.6343 14794.1512 4346.8775 6085.655 6532.6 4101.4853 7970.4838 359317181 gdh Nitrogen Ammonification NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 27913.2134 17102.2926 1239615.59 24844.4442 80902.5868 12191.452 49780.6413 168235.6458 133562.4738 50674.1063 61103.4268 29808.1525 883969.9229 73219.1303 142633.0931 30441.4737 35576.9056 35576.9056 27277.5947 55689.8166 58982.7844 32038.9733 95781.7391 57411.6448 22736.3058 46642.0463 38212.2414 26878.2023 77537.4362 353712.699 54427.5138 36535.7882 48167.4997 85037.5782 39258.9537 54848.6848 219861449 poba Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 6760.4748 5839.2029 29856.7284 5082.6719 6366.4161 2973.6156 2214.1757 170943568 endochitinase Carbon Cycling Carbon degradation Chitin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 13931.7464 8504.9809 16528.365 8698.006 9586.4524 4827.2698 4350.6544 6701.1323 11063.3859 4825.302 170187.9629 11929.8676 11434.3001 7687.1419 16290.9364 16290.9364 7976.9728 19564.2719 12201.3335 13163.3919 15833.0826 13390.749 7222.4826 7594.2522 13905.8005 7457.3809 23424.955 15221.692 16657.7869 6736.9366 7632.5281 9872.5077 7593.2471 16939.4854 149186396 mer Metal Homeostasis Mercury Detoxification Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 11373.3656 7620.5591 9590.9786 8400.9632 6175.9145 8378.317 3439.451 7971.078 12305.5502 4572.7478 165858.4148 10958.5016 9967.7357 5159.731 5159.731 6699.2006 12596.7765 11210.8017 10210.403 12094.1436 14395.2899 6947.6194 5172.6486 15634.1501 7328.9837 21030.0177 9015.8914 13194.7581 5381.1081 6928.5055 7463.3271 9665.3346 15101.748 261206220 dehh109 Organic Remediation Chlorinated solvents NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7865.4733 8419.8355 4198.2191 2325.6621 4368.1254 2642.1716 291688.3778 4089.8775 5593.1743 8666.6717 2739.2557 2739.2557 3990.7773 10769.1611 4159.81365 39634.7726 5496.5566 4295.1823 3117.8992 6909.5836 7531.6003 3421.9713 12753.367 7770.8259 11553.7311 2988.9295 3121.30355 7918.15975 5192.63835 9206.83245 326798448 ara Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 78443.2505 19288.7426 59011.3432 935181.7701 86234.9128 14188.3292 45289.7431 66912.1178 130287.1226 93271.2749 155961.7932 72530.652 6838536.7772 90519.7396 194833.2259 172474.4523 105934.4272 105934.4272 63834.1946 102665.2209 69678.2698 365559.7859 88971.799 235174.8351 64281.54 56006.1285 103393.3194 55121.2692 180873.0283 83056.2192 110976.8809 40787.0292 69898.2202 72747.4962 46132.596 91530.5562 374584725 arsc Metal Homeostasis Arsenic Detoxification Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 28466.0759 5474.6722 8000.4575 15110.5853 19722.3495 6589.6534 5019.7693 9542.2666 9135.3088 20873.8838 163943.0531 17205.0191 13299.6835 31203.499 42132.8445 42132.8445 8897.5082 21148.3714 11671.3473 10242.2175 27539.9976 14785.008 5180.0176 9272.5615 20978.0434 9677.3137 184704.4331 12330.3449 21591.5725 49493.3064 10215.1962 20418.2157 9076.0094 21771.2497 153159 amyA Carbon Cycling Carbon degradation Starch Streptomyces venezuelae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4684.8311 5693.6452 3644.3066 4223.1639 221534691 dehh109 Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 14735.3184 6088.0656 7026.5098 10425.4174 110541.4322 2861.0837 2861.0837 8010.3913 6386.8337 52054.6538 3077.5046 6207.4482 11870.3053 7157.6764 7217.7011 13429.7358 8323.9065 24433.9964 5093.1888 3205.7164 288918947 xyla Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 10882.2441 25501.2205 2547.3172 2742.9787 3270.8729 133550.2773 73440.78 6646.7879 6678.7723 5288.8823 5288.8823 3553.6662 12924.9376 9259.3823 6253.4088 17093.0222 8551.3793 12101.6541 17474.4302 2626.9092 11149.6098 6638.7222 7879.3559 2394.3993 3631.8588 4454.4718 4966.0297 13877.6486 336297446 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7824.5064 18820.948 10290.023 4071.52 10915.7516 7350.5935 11560.4992 12776.9749 6767.8805 315044.9897 14321.1599 10172.9133 22302.996 10197.3695 10197.3695 8500.8949 32177.4742 15857.5591 12617.1116 20494.857 16137.601 6653.4868 9645.2436 23617.3123 4885.8645 23294.2316 20412.2366 29270.5559 6127.9736 12037.6109 12941.9968 7256.7386 17266.6726 116633904 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5681.127 5501.8068 11335.8543 17970.0454 5176.7453 2742.7572 11355.9016 8032.4128 6280.9875 1098438.2303 4241.9798 5665.9902 8639.4993 5566.5899 5566.5899 3893.0459 16250.6917 7423.5621 8969.3367 12254.6605 10021.1418 13056.1316 6042.0483 7475.833 12176.373 13923.8427 8033.9055 14844.0375 3692.4646 7439.3528 5704.6489 4727.6425 8902.4242 327177912 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 16118.6432 12615.1471 171456.0726 37475.9249 11156.5703 41014.135 47275.5702 7686.7687 10368.4757 16944.9417 25002.0841 220875.0769 11746.1311 17355.1699 76346.3501 55763.8513 55763.8513 14095.2137 24238.6046 14515.9608 122154.6181 27943.0514 31816.5863 26232.1465 14835.4498 14403.014 7063.0425 40297.7085 12394.5539 14181.3296 6093.0549 19318.858 38161.7913 10265.0362 31196.1483 222480923 dehh109 Organic Remediation Chlorinated solvents NA Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 11614.5291 9488.6932 9840.766 10651.2838 6921.2942 9496.0257 6934.067 7236.5969 12190.0447 11710.9518 33751.9823 304720.3083 16454.9209 7569.4058 13298.4272 7767.1721 7767.1721 11226.3255 39704.4619 41639.1003 69116.354 19742.5547 13461.2243 16776.5132 35510.3433 10167.6857 8453.0014 45010.3705 20760.6784 71811.8716 9390.3781 18903.7007 44414.7046 7403.0278 21176.7314 94422635 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9971.118 7934.7106 10818.8186 49402.0586 11649.5873 5849.6759 10999.9746 31776.8297 37895.302 10377.8487 20772.3444 396966.6351 16185.5158 16296.8037 11666.0805 9569.3399 9569.3399 8202.7064 15649.0529 9706.5638 5385.3185 8598.1486 7710.3327 3081.2641 9684.2726 22321.1222 5595.6927 23242.9054 17545.6472 24978.1059 8219.975 10953.8645 11642.7295 7644.8121 16973.0644 212691094 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 4642.5311 2301.7941 3053.7689 11922.0645 143683.383 6492.4678 3995.4467 7385.8966 10327.1068 4852.7972 5182.7423 7017.3544 3271.3949 3109.1721 2935.9705 5267.5426 170176875 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga sp. RQ2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 15695.5525 29119.4682 16633.6317 13699.2596 20494.9013 14933.2617 7498.2378 6048.5734 15185.9401 14387.7586 5786.0598 293776.0762 21679.7853 13848.8946 14265.489 7996.9651 7996.9651 12028.5347 19127.8011 14504.0418 13370.7882 18470.6432 20408.6816 6704.6792 7288.0598 17685.8297 6727.5684 26049.1184 14927.3394 22723.0731 6257.801 10078.9769 13160.1795 6521.4015 22457.8963 317394360 b_lactamase Virulence Antibiotic resistance Degradation Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4798.2627 2812.6203 383778989 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 39486.3979 7935.2655 8092.21 46899.6661 7676.1764 9133.0113 9085.0463 10322.0765 27815.1299 64538.4959 22926.5139 225506.8649 17787.3031 29567.3645 26211.0516 50276.0487 50276.0487 16205.5819 20217.8238 12775.9019 18897.8096 147962.8648 15967.5691 12312.9278 24245.1268 18818.9411 62386.6776 74800.2889 33576.5976 23794.7858 8976.6045 19638.3782 40196.8251 8874.5075 18811.5143 68346556 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 111943.0745 6192.7616 7425.2015 6057.2104 6654.4715 4825.1655 13624.7104 8231.6289 136189.3664 8625.9157 9297.8118 12059.6418 9180.1623 14750.4194 8614.1778 10214.4589 3975.4596 19581.5852 17876.9678 52857.6519 14825.8193 22527.8764 16091.2724 6908.2921 10784.0319 11614.9272 5817.0315 87310833 Sir Sulfur sulfite reduction NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 79421.4906 29555.8774 87913.5741 92961.8483 833684.9747 49307.9816 94577.8557 122369.2038 198740.8583 63759.7595 167244.2477 82334.0888 1741906.3721 117426.6554 91258.9712 132258.6513 118021.3738 118021.3738 56907.6161 340569.7111 63479.8431 95428.5784 93124.5679 175231.2275 108685.9043 82260.2578 113318.118 167814.0222 253766.8785 254676.0033 110617.345 97538.1693 70799.7754 113358.2951 128072.7221 126904.0957 209486842 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5067.6823 6647.187 4002.8759 3815.9523 3446.9044 7535.4955 3158.4887 3158.4887 14611.1958 57533.5111 6596.0935 104954.7692 12205.5175 2355.7118 8997.7104 4376.1765 3125.5934 2824.7887 5867.4481 3441.1179 295432816 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 127283.8331 19125.2713 154313.7418 42480.6416 96902.743 35762.637 109543.3633 93451.6751 118094.8588 92079.9917 70017.1204 82104.7991 2805107.5497 85007.6491 80290.4041 118260.8887 82836.688 82836.688 101211.4087 131666.9467 54148.0863 72641.9288 231195.4274 147027.1241 73490.5765 70866.3065 67850.883 74464.1415 220849.9261 108057.0347 146549.4757 101008.9615 78115.7691 95613.1966 59430.2141 187832.2527 142850687 endochitinase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 4023.4376 2219.8222 5585.9666 5424.9683 2987.9175 242481.715 11606.4352 8009.7114 409571.4942 3069.7456 3069.7456 2580.9294 8939.7556 5767.5201 6940.3702 3285.7931 2694.7441 8906.7324 8121.2228 7309.597 2686.9484 3458.8328 3634.7865 16608.0358 24108.9143 300310928 alkk Organic Remediation Others NA Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 100174.6304 25705.1067 54073.7489 472445.3538 86248.1172 29311.6561 64451.2444 198377.3812 35003.7624 62042.0583 72727.3683 46749.5341 1868488.2129 80814.3439 77081.1269 68481.0675 52295.9803 52295.9803 43619.4721 118751.3147 58677.6707 94542.2898 78892.7127 101605.7223 107368.9561 38521.1628 204291.6553 155033.3456 128865.7879 135008.0749 81442.5415 40451.3367 42341.9384 75086.9577 215371.7768 175956.4252 298282880 cysJ Sulfur Reduction NA Neisseria sp. oral taxon 014 str. F0314 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 19865.5667 10488.8252 8517.9776 8527.5055 7201.2165 5904.5767 8106.5535 4455.0018 21642.2154 21642.2154 9269.6856 11922.5017 4721.1378 46280.8327 3341.8162 5844.9541 5559.0276 10644.7603 4926.6292 14509.7063 3572.5239 6597.1543 5077.6818 2480.0642 338824530 cysJ Sulfur Reduction NA Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 35174.3371 959226.1901 335538.9074 14690.4682 9813.8179 47101.3191 67321.9578 65103.9851 19080.0185 43490.321 28106.4965 1057871.3616 37964.1563 28433.3978 32742.5326 32629.5817 32629.5817 20832.7205 46408.9228 25003.0289 15010.2369 30773.3143 40889.5037 15333.6533 30121.94 31273.4542 50119.0219 99084.2181 36674.0113 77857.934 51462.6067 40475.8304 35126.9721 23900.689 88986.8495 383829900 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 13887.3989 5598.577 78219.0884 20796.0127 10855.9331 94548.1924 119899.0824 7017.5258 12441.1524 31744.5159 9154.1617 194984.623 54390.9853 32133.986 16605.1003 22175.4541 22175.4541 6807.7346 26619.2712 41559.6634 14543.8589 28097.8187 22120.2495 21733.2671 10693.9636 95945.75 130559.1974 51716.8953 117024.303 19952.0484 28879.176 12074.227 16836.8009 27156.7145 20601.2022 15160399 alginase Carbon Cycling Carbon degradation Alginate Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 41260.3683 40888.9686 27231.1821 89542.9494 32364.4574 22518.6084 38307.892 15151.814 48955.8071 57411.115 35549.5099 508777.9599 77771.3094 87885.3272 70049.3304 103070.2869 103070.2869 36905.4044 102482.5232 44185.8683 52705.7056 33311.9985 28335.8399 56429.7574 43687.4132 138074.8851 85015.0153 1099607.6165 96677.3178 97559.033 50736.8745 42351.8687 33273.6916 45834.9734 32894.0074 238720698 amyA Carbon Cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 6698.0927 9830.6902 4919.1885 73806.873 3951.3714 9073.9271 9571.5354 5642.3154 166951.5614 8324.2504 7130.1215 6626.7296 3410.4888 3410.4888 4783.2978 15807.3892 20807.0808 7643.529 8801.6216 7131.7345 3499.1969 5333.8362 18831.5787 71787.0731 15943.9401 7750.8055 9234.629 14255.8415 5233.5239 10214.3273 137440.7438 12076.7269 66801875 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 15080.1627 5128.0779 39038.7819 73655.2677 21823.0738 7144.2538 12815.226 7993.7899 20354.7774 58906.1168 12329.1565 247800.3127 19865.9405 77236.5101 47372.2337 25288.9747 25288.9747 8487.7205 59790.2406 10741.5406 33235.0367 85092.2448 36798.6925 9264.0307 8836.1006 40399.2717 25662.794 289168.7218 17354.4445 63053.2633 64677.1934 20276.4625 29218.0262 40876.3047 7707.6816 66474859 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 9039.5682 11614.5405 10898.5866 26427.6966 6243.461 8398.3574 28376.8083 5159.4732 11320.3617 10942.2514 6978.6533 282130.1987 11682.3048 15775.0113 30072.0147 9427.5872 9427.5872 12633.9338 17930.759 12805.9115 46914.1014 10951.2837 9114.4339 6972.1781 10367.5216 30745.7116 12977.7765 66381.6383 13831.793 20025.5984 16800.9776 8047.2634 9114.3769 10188.4192 15419.7644 139003137 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 71277.4754 159683.4447 43288.0921 20613.8441 14412.3408 5052.517 11399.071 12474.6566 48088.7137 11852.2846 14837.5708 110171.0076 166520.1194 24538.9146 37172.9401 58591.0892 55804.7572 55804.7572 53867.3534 54928.156 20320.2433 29945.7681 49140.1585 13505.1991 22375.2073 20749.0044 20393.4865 45835.7264 95998.7084 60757.1334 22297.4841 12016.7116 21188.4853 23111.1083 17273.6088 92016.8239 161378972 arsc Metal Homeostasis Arsenic Detoxification Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 31880.1146 4675.6747 11766.439 4859.6359 3638.3054 5423.1577 3293.6075 8859.0486 7381.3128 12979.8671 138311.3021 11286.4183 10085.3838 14026.4488 15642.2427 15642.2427 5724.7335 19117.2703 10666.9217 27081.8143 55713.809 66075.9807 5736.4596 8890.0674 7310.7464 22532.927 29968.0123 15000.1173 15044.1967 13498.1333 13210.3412 11619.5699 3734.9416 31645.6596 218324093 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 16003.4204 17824.5543 25152.8192 12052.5131 5987.4425 8341.7616 94941.0056 10121.3871 13115.7773 23582.538 9376.2663 338420.0533 20840.0426 13484.3187 12403.1154 16570.0636 16570.0636 7333.2623 23494.3789 11659.348 12780.9687 17137.0964 24573.6806 183196.0504 11203.0383 16773.2422 7726.8456 42011.7886 8926.3373 31570.2246 10406.9769 12297.9073 9604.9277 10070.7235 22613.4932 228015267 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28095.0443 14838.262 110523.7216 70722.6058 43633.0125 23063.8917 11989.7057 41166.9446 12187.7687 31293.3634 27148.9435 24510.0834 215419.9701 37645.2354 134853.6332 28634.3426 226919.7757 226919.7757 18986.6575 47956.8108 13802.1138 46591.2354 57944.4678 23276.0391 8660.259 26077.0779 35568.3596 12668.3242 69161.462 19959.4179 69473.4094 49199.0135 33573.9699 48354.6994 43757.5303 29260.4932 15055577 dsrB Sulfur sulfite reduction NA Desulfotomaculum ruminis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 31433.2347 15759.1686 16092.7153 26661.0591 9648.8475 4768.8303 12798.0862 7943.1115 7635.1471 38715.616 21269.1824 27392.2897 11553.2932 64910.5526 17301.4055 11679.0338 29102.9908 29102.9908 15299.1136 31796.3591 24491.5301 26348.4961 23996.4767 19241.0038 9337.6966 11164.0072 23102.4616 14454.314 174742.2391 25241.5042 34824.1566 12863.3279 18720.4398 21747.8136 21255.2235 29334.375 386015607 nasa Nitrogen Assimilatory N reduction NA Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 6494.3484 3595.5006 3204.3851 27998.1044 5494.8885 8870.7101 2724.6202 5637.0747 7955.6524 3250.3661 6119.8956 326948094 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 32227.0268 19781.6504 5325.8063 59242.82 14039.7239 66846.2447 19894.3498 38412.1545 15005.3155 140895.5238 106718.7371 427666.0774 25341.6191 36798.5543 301227.4252 22616.4552 22616.4552 39550.186 38881.9729 21306.8204 35794.1559 72037.07 61596.1053 30094.5771 32310.3541 48914.5155 58956.5111 103025.791 49675.4667 77878.0304 29857.9291 29689.9702 45546.103 34704.4425 46423.0527 229488764 one_ring_12diox Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7497.8264 10128.163 4799.8249 2972.3747 5622.1248 8288.0476 8288.0476 22524.0196 4332.5126 2291.8789 5992.842 8956.0016 4346.8231 5150.1786 3206.3064 2732.2719 3856.5528 63029769 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8244.2346 6631.1211 4647.3024 8655.8706 6552.0805 20500.3026 7454.0688 5354.7914 10456.993 6791.9906 245340.6862 11869.6912 21381.742 33043.9252 9616.9639 9616.9639 4882.5488 17608.5976 7912.7248 8214.9634 9151.9817 10460.3038 4604.2741 5676.2615 16076.6201 6768.3065 21662.0931 6226.3802 10310.2259 10145.6717 9539.1749 16438.2863 6596.6538 11190.1151 312963550 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 10117.2178 9936.9863 4804.1726 5106.2677 4232.6607 7913.5205 6759.3746 4624.6432 162693.2435 11818.8349 7929.6091 8535.7517 5935.4368 5935.4368 6022.1821 11277.2787 6283.7087 13358.3587 10568.975 6213.5144 4391.8741 4194.5154 11327.2464 5689.3504 15168.2408 12595.3039 12071.222 3872.0573 5587.3327 4327.9107 3715.5182 8519.0411 260850317 mnp Carbon Cycling Carbon degradation Lignin Hypholoma fasciculare superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Strophariaceae;genus:Hypholoma; 4428.2312 7922.4915 4408.2859 4330.8405 6135.6575 4794.2971 4723.7263 2874.073 6164.1364 9358.0834 8021.7022 1774.5925 2855.4637 309303964 phospholipase_B_fungi virulence degradation NA Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 25572.6198 7017.9904 8072.6402 12978.9982 6575.4926 3952.7017 6328.6615 5297.7783 11503.0023 11471.1787 162920.0094 11621.1103 8341.8167 17530.5369 8966.2417 8966.2417 5036.0737 14156.6971 8337.5106 5159.2293 11415.0924 9891.7794 4831.1774 6509.0559 133004.8068 7064.2433 18769.9858 13358.2306 17468.8581 5210.0924 9357.1479 7668.4024 3174.4282 11199.8958 383339800 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 82730.4376 9259.6428 68663.6083 16492.4569 54134.0526 44606.9559 16780.4183 8961.014 12217.2563 14988.2428 20449.1808 297715.6243 12865.3858 23464.54 31063.6229 18512.8576 18512.8576 15458.0045 37785.9365 11991.172 13768.2494 18783.9975 229429.7887 12490.9039 21310.2565 28293.7788 14629.2849 49656.5134 23443.6971 18747.6512 11846.9229 13757.2443 28057.8198 11567.0891 12623.2161 348593388 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 48181.2993 24074.2062 22893.7304 17151.8222 17310.7759 10813.9079 51318.64 10797.7865 40463.9096 409938.3157 32375.3697 523603.1011 110256.845 25760.9597 52478.3746 29861.9885 29861.9885 14881.5301 46228.0118 62585.0664 48817.1059 74111.8078 31649.158 20984.8237 20172.931 27705.2032 60374.6024 58956.2133 35357.1907 51749.8592 16453.6524 30148.6022 37778.0358 61987.625 33792.8313 269098612 amyA Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 41937.5615 30904.3519 11635.7752 6004.3306 25792.881 23538.2577 26212.5185 26955.5116 31389.0477 43986.4948 704621.4716 28235.025 49862.9485 32559.1891 21203.6973 21203.6973 21817.8558 74247.8636 19218.8136 23625.6941 58490.0769 31280.9209 259274.387 36894.3264 68520.8471 46908.3147 56303.969 27143.314 33474.2821 21470.0238 45958.9374 37954.4395 22697.557 331278.7123 94549834 ara Carbon Cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 24556.3916 2375.6151 12382.3718 9040.3911 7643.6645 30151.1158 76508.5103 4182.7809 4917.0189 5132.2622 5132.2622 8782.0761 5344.0862 4042.2634 8969.1764 5066.0859 6457.4697 9344.2352 3363.8386 272263.6997 13106.7654 8114.2522 3265.4515 10026.1887 5165.1235 8669.5649 7300.9314 357012514 atza Organic Remediation Herbicides related compound NA Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 4692.4355 14378.3498 6337.741 4516.844 4661.4189 4319.1493 6286.9215 1955.4622 1955.4622 4270.3317 3635.5106 3090.6583 11438.5329 2535.6689 4842.8221 9316.6316 3308.5573 73487245 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7365.7404 2482.4741 2126.9883 2530.4704 5984.7336 4078.9743 9332.4149 4313.0639 8632.7143 6228.5886 2023.2019 4639.5735 2827.0102 2677.4454 254489200 vana Carbon Cycling Carbon degradation Vanillin/Lignin Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 20895.9518 7232.1479 5117.403 20151.2897 14937.8111 6266.6631 4166.8502 182108.4398 17857.7889 20856.8685 155017.389 21936.5835 24612.5838 19167.6086 7835.3447 7835.3447 11185.4363 21774.1528 15674.1784 72710.1065 27204.4335 15196.8195 12172.2835 11770.2033 22272.107 9262.3819 78221.7745 18531.295 22917.9572 7933.8548 16410.7167 49264.043 10073.7796 16105.5686 372266321 ppx Phosphorus Polyphosphate degradation NA Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 5773.093 10713.2301 14757.6653 4452.4491 2666.9644 3679.3733 4867.5639 3414.222 72049.5907 4437.1812 4831.5469 5120.7181 3944.7629 3944.7629 5985.8294 10144.0559 4559.8903 10249.2616 4083.6231 2363.9779 28681.7775 11569.908 6719.2843 8610.4751 5609.9222 11880.3773 2700.5898 3274.5554 7914.4776 2072.7473 326692172 ppx Phosphorus Polyphosphate degradation NA Leuconostoc argentinum KCTC 3773 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 11551.6087 14661.0855 6177.6879 92150.1228 4098.8411 7990.4942 15017.1742 139310.01025 4860.8703 43217.5621 13197.10685 4799.88095 4799.88095 5787.5542 16302.4152 6016.0732 7995.8179 4349.8823 7910.705 3863.8508 6631.0328 6655.0482 20478.015 4182.0752 8929.3156 48215.0999 7559.2805 17102.2848 6716.482 4638.998 119536164 amyA Carbon Cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 11736.4281 12699.0192 12545.3305 13675.0029 5507.4521 14473.2685 25172.9366 80972.9712 11272.0661 34355.8134 37788.8156 163160.3769 10771.8995 16585.7284 125746.8514 17259.0725 17259.0725 14423.8285 199437.6501 55429.6141 12907.1494 23836.0467 8613.5967 13852.9045 8563.0446 16110.9795 15845.8968 33987.0323 14592.4852 27872.3706 14739.8003 20662.4742 28822.258 12529.5294 16397.9547 355621552 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. 7_3_54FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 7128.7498 5291.5727 6162.899 4422.9582 3346.0781 6296.5586 9077.2325 4436.6187 229025.076 8154.919 8598.8629 4931.0307 4931.0307 5537.3714 13638.2234 10064.8581 11829.3905 7464.279 5500.9948 5517.0805 14794.5549 12105.5129 4550.2081 15824.4016 8791.0705 12234.2633 8516.8403 5520.9667 5824.6938 5558.9347 27948.7833 86357410 nasa Nitrogen Assimilatory N reduction NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9914.9344 7944.7955 17478.1287 9273.6138 4635.3005 4479.8919 10699.7461 3582.3591 4771.665 39676.6803 11211.6621 153946.9013 8749.1675 12313.9514 12903.7182 3876.0704 3876.0704 40514.2677 17371.5435 10453.7612 7313.0221 7012.4297 4212.5303 3675.0348 23359.6414 4596.9269 36112.1754 8247.7523 10290.4412 20371.3998 14467.7989 3799.0195 5906.2939 9850.6155 208605290 hzo Nitrogen Anammox NA Candidatus Scalindua sp. enrichment culture clone HZO10 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 4482.8198 4286.0657 23147.1708 8277.7285 3468.0621 6458.2638 2269.6061 4730.8598 4531.0463 3196.4709 167710.6431 5789.0873 9897.6221 10804.6344 5696.7738 5696.7738 5155.7564 11790.6338 7990.4743 5630.4329 8652.3014 2501.4558 4287.3264 19257.9372 2948.5269 15850.97 10694.2405 13236.9125 3927.9709 5286.4563 9550.4989 3044.3711 170110953 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 3980.1746 12080.2537 12191.3214 3531.2378 4984.4819 10409.5565 3955.7988 147994.5428 7065.1106 5931.0325 3996.8489 3996.8489 6458.2009 16240.3528 9802.7636 10890.4717 4436.6077 88843.2446 3364.4887 11668.5527 18938.8588 28646.3217 3567.3344 5773.5484 4593.4866 2052.1327 5061.3397 379724629 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 9089.7733 10356.2502 8806.8727 9534.0753 8857.2609 3818.8841 6452.0188 8199.7462 4290.2947 147363.1846 8866.8462 9632.8411 4610.6163 4706.3822 4706.3822 6905.661 11506.1391 8057.2669 12480.3944 16017.0009 8107.5919 5129.2019 5419.0664 14850.4543 4497.1931 16366.4933 11778.0176 13971.4151 6074.1891 6949.131 8398.1495 5540.7828 15302.9589 110823938 tpha Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 371020.7727 8613.3067 76296.9234 43603.9016 17203.9411 4022.6663 12688.4645 2118.6063 5832.39 24141.8281 8609.547 150667.4691 26092.4473 10667.9144 13134.4646 34092.8232 34092.8232 10043.4237 62616.1174 6161.7991 16435.4808 15376.5454 11325.3349 14277.94 13547.5858 21164.0208 19206.0115 76616.6155 36868.7627 20845.8823 8089.4664 21124.2795 14406.3685 22445.8747 9361.054 269928606 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 29273.0287 8860.9389 6014.7515 894582.4371 19879.9145 34503.2376 17269.4706 60151.81 14893.7048 17922.7449 428953.1397 10868.8014 13603.3872 18838.8546 17043.6187 17043.6187 16099.6172 18724.1156 22040.4758 8789.1726 20287.6255 19835.5171 9870.3158 11315.0393 19411.2667 31130.0626 67859.0332 29204.6613 25422.0984 13103.3006 21256.0285 11480.3806 29138.7136 24573.093 227198601 gdh Nitrogen Ammonification NA Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 21998.8375 7861553 PRK Carbon Cycling Carbon fixation Calvin cycle Hydrogenophilus thermoluteolus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 5336.404 11127.534 3259.1191 5484.2188 4832.2479 26828.0999 3564.5757 11188.5569 8409.6376 343917113 phytase Phosphorus Phytic acid hydrolysis NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 15776.1617 5904.8618 30284.4508 263290.0105 28034.5496 6341.7572 17874.1673 2163.6052 13331.5464 19051.2179 18190.9754 560606.4812 30156.6917 33833.0977 49660.2929 32928.4994 32928.4994 11355.5249 18160.0964 14755.5754 7541.4384 10596.7679 52419.2202 10443.6257 24266.8366 56267.7538 23812.5452 45439.0436 67583.6392 60372.2724 18936.7454 21995.9901 23902.2128 7147.1865 19755.9237 117928665 exochitinase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 43681.4184 14518.5384 308983.4524 65251.7812 34732.4268 40752.8314 38626.7378 58411.6834 19736.3591 51138.0775 82533.6949 43541.6924 683016.0939 44031.7088 58702.4308 43844.2899 37699.0813 37699.0813 49146.7071 187811.6203 44309.4123 134295.0343 89253.0805 70106.0488 70341.5136 78328.7005 76497.6289 34567.2755 188065.1355 49408.4829 69785.5916 28198.8559 38833.7214 50261.7927 27704.6926 111537.6776 374998622 FBPase Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 3675.2412 5562.3623 21490.4248 7498.6835 3344.1757 4454.9517 5960.7426 90539.1699 5412.2266 6365.6612 8041.1174 6234.205 6234.205 12392.39 4156.5239 3808.2375 5287.8282 10042.3372 2622.7473 13980.2832 10720.9272 8765.3281 4575.043 4665.0987 2866.1039 2878.816 166362991 PRI Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 44683.1681 30657.0215 9408.8272 72799.7547 7783.382 21341.1817 32618.5515 14810.6938 19124.1035 30524.3716 17213.7436 450018.3305 36977.7644 25952.5778 27942.003 28685.4644 28685.4644 15760.3579 36109.8323 25916.5164 41030.8324 35230.1608 428438.9734 21657.9074 25518.2297 27658.33 22547.07 232799.4539 56729.396 64490.1608 86916.9794 22725.7811 33398.6465 12002.897 28302.3254 327300301 chnc Organic Remediation Other Hydrocarbons NA Trichophyton rubrum CBS 118892 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton rubrum; 17600.9558 15163.1447 16974.3811 23479.0538 14337.5293 10521.0585 7202.8958 12232.4411 12498.4097 6628.5294 262951.9571 15439.4862 13932.5751 12916.1737 8142.0385 8142.0385 8286.3882 18216.9527 14821.3681 12763.1672 15663.2284 19042.3442 7613.8051 6512.8503 19009.4945 7144.0136 25303.2446 11607.2169 17812.7726 6150.1518 10967.4403 10892.5112 7780.9772 26058.8063 332185685 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 200812.0501 13163.9063 26543.4435 39677.8322 33430.9644 11305.669 33641.8501 12427.1083 64884.1015 30271.8901 39842.1243 892543.1199 75982.9212 107477.6947 98229.3433 61548.0142 61548.0142 15123.9953 27372.4186 17649.936 27737.8966 25584.8682 37623.5594 36835.8052 11640.9975 48360.998 20989.5219 66216.1013 19401.9254 25641.5666 10659.342 13890.0889 26657.6005 12590.0039 23944.8618 334730772 poba Organic Remediation Aromatics Aromatic carboxylic acid Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 9401.9706 14546.3485 7265.0973 9434.677 4667.2901 5530.1987 4205.8559 9369.1095 18716.6909 5109.192 148935.6184 17018.6426 9525.659 11726.8263 7883.6072 7883.6072 4948.7237 40511.082 19115.3062 38578.1713 6301.4112 4613.7076 7187.1946 7890.3427 12265.2029 13894.7503 17921.6895 8189.8695 14923.5368 6483.0536 10436.5738 9776.8975 32074.5406 14822.1794 301092799 xylose_isomerase_Oomycetes Carbon Cycling Carbon degradation Hemicellulose Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 4763.3388 3655.1973 2405.506 99570.8227 5192.2965 5287.3529 5810.2795 2100.6634 2100.6634 8547.5415 5064.4385 4270.8795 4746.1723 5666.5696 3402.9025 2467.2779 9233.6355 9256.7678 5788.6135 7355.7206 2345.1098 3868.5998 4175.4316 2535.1272 1899048 chitinase Carbon Cycling Carbon degradation Chitin Serratia plymuthica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 76490.2977 22262.8076 34556.4667 37470.6006 132375.9376 50753.1711 39375.7004 39473.0546 33057.7131 32836.04485 18035.9096 738104.73135 723072.19505 40899.09945 48946.32885 41451.55875 41451.55875 25158.63495 46146.03605 41607.57555 27761.93695 56358.9478 87252.64395 63705.35585 20984.9247 52677.66485 27343.9766 114585.76725 54363.58275 49704.3371 24770.4427 24719.937 36098.4982 16602.08355 25425.78715 294884141 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA89_4W superkingdom:Bacteria; 6308.9005 10437.0361 6674.896 2823.9587 2351.3272 39481.304 7991.2795 112005.1415 9302.8484 7382.3029 7382.3029 3267.7552 10104.6578 6664.6924 8108.7515 13986.716 93406.4484 5589.3922 15115.1964 3677.7962 4315.4696 4515.8364 2377.1787 8020.3772 296392579 cutinase Carbon Cycling Carbon degradation Cutin Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 23567.0008 12962.3334 9382.2741 16999.9781 62214.9058 5931.091 9914.5677 16569.9891 18448.8546 11182.4099 26968.4206 9528.5643 354812.2257 14477.7174 18430.9692 79048.411 25297.6945 25297.6945 11764.5657 27488.9651 19719.749 14554.9117 15329.6901 29987.7495 11905.6813 9018.6851 23055.5032 8898.3788 31240.1133 15933.0312 24754.5569 15525.1385 11289.543 10330.5019 11835.5911 22756.9095 307728600 arsc Metal Homeostasis Arsenic Detoxification Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 42082.1308 9127.6221 13422.1168 22502.7079 6305.5587 181904.3428 22544.5276 40822.5032 35552.2166 163187.2314 35991.0417 765093.2704 34702.2686 19268.2208 28189.2985 18915.5156 18915.5156 11694.7845 65384.3329 19784.8992 30334.9853 71783.1527 31001.4237 22776.5063 15519.4607 21196.1949 18867.6682 91571.2716 32251.9603 42185.806 11619.8327 22849.734 63362.2076 19119.7254 22489.5225 ieghzo203 hzo Nitrogen Anammox NA 7231.8214 9781.468 4771.949 4847.0993 3017.3694 2310.3072 4820.0444 5759.4392 3054.3856 129717.9824 7609.6188 6245.5945 3311.4948 3311.4948 5608.0402 9067.5799 6986.4191 10343.2155 10176.2784 12310.7613 4478.8023 3067.4165 9255.9248 3379.2654 10479.467 11184.5128 4140.8676 4554.3066 5360.7998 3893.2887 8892.9092 118172732 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9716.5303 4698.8025 2875.4515 6279.3619 6576.4061 2744.9803 2744.9803 3243.7537 8428.6005 6205.2094 4950.1213 4431.9235 7139.5874 3423.2813 10947.5566 8305.8793 8347.6337 2645.4455 8361.0396 3275.9946 12145.1214 322434602 ppx Phosphorus Polyphosphate degradation NA Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 58952.9371 28314.019 30352.8199 66084.6994 53011.806 17521.8536 32895.0806 64828.5379 31696.3027 52965.7091 78678.1775 44313.3429 2181076.4186 79801.775 84164.0479 77373.1601 53281.8673 53281.8673 65995.3267 67048.2885 48299.7317 54617.6828 56908.1938 152552.6755 28540.1674 31958.1998 64949.2462 51728.1013 169621.508 80586.9785 81006.7441 34240.4842 43380.8281 36916.6538 42647.2069 78311.6446 392844399 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 42597.1058 16760.6431 10186.2155 75196.5604 33219.756 37677.1521 34631.8693 35895.8379 30721.3152 34272.9562 45124.5549 464988.0579 43056.105 42409.574 54405.9555 41158.6325 41158.6325 17599.8571 51569.7835 35377.4763 16169.8024 122863.0938 39073.9426 24074.9767 20281.4602 49647.3158 19587.5893 71414.9311 44702.7079 45166.0346 16161.0027 51049.6434 39764.012 24011.0296 50983.9099 336427552 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4571.9682 4335.3102 63585.3227 7610.9785 2420.3799 4436.6097 5077.6269 120404477 endoglucanase Carbon Cycling Carbon degradation Cellulose Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 23943.553 10669.8044 16343.1157 25738.2841 16951.9645 12542.968 17270.1868 12701.8888 19700.2035 7310.0676 276102.6408 45410.4679 16673.1862 44042.9824 8597.6074 8597.6074 13731.8549 44116.1242 16683.3943 13549.7003 38667.5827 13164.551 14040.2276 16746.2151 16225.273 15861.4439 40109.2613 19107.0601 33907.3316 11972.9908 19937.3475 49870.4384 12819.1874 23985.5017 386422904 tmoabe Organic Remediation Aromatics BTEX and related aromatics Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 6938.2586 7301.9588 23692.4405 5615.9279 4075.5893 7599.5698 7697.2504 3543.652 98423.8349 7776.7891 6425.5873 6958.2778 3770.7654 3770.7654 3803.2835 13459.9279 8361.4948 6735.2957 2679.3567 5538.8389 12750.9144 2420.8056 12511.6334 7808.6413 9317.0755 9504.6129 6252.1096 6413.2419 3752.0967 345432970 aps_apra Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8736.1282 7858.0119 3057.0254 235466.9769 3271.5764 9349.5324 7635.9033 3905.5027 154065.0992 10014.3281 7085.3522 4239.2063 4503.6156 4503.6156 4273.8412 13397.2174 8778.2558 9041.6079 9999.5989 60422.3495 3148.3633 4277.4725 12505.2011 268398.5593 17277.6338 9878.9895 11908.2537 4013.8862 6356.8945 5108.4 17731.4498 10660.6923 220919687 msmabcd Organic Remediation Others NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 4002.0819 8369.025 9687.5088 7653.4471 5415.7561 19472.8333 297805.2135 4357.6095 5700.9358 10305.3597 8003.5777 8003.5777 4489.6839 7447.0643 9056.4797 5802.423 10274.6492 2379.3695 9774.5816 6205.3116 6478.3975 5882.1279 4559.2139 101004.143 2437.9069 15559.1824 99079220 nirk Nitrogen Denitrification NA Bosea sp. PD 23 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 5520.0601 15601.708 2997.3534 2441.3589 3822.5023 7158.3568 2620.8475 112294.5878 4058.8599 4988.1485 2868.3948 2868.3948 2720.7704 11249.2869 4706.0059 4836.4359 6782.4443 2584.0219 6924.1449 2296.237 9845.657 6314.6112 3675.0589 3567.909 4137.4759 2536.8963 189338852 arsc Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 82208.0267 1498117.5956 49877.0021 52067.8554 111464.7623 75597.6498 113180.7293 77089.4366 44127.4304 57290.563 148045.9163 79236.2762 1703297.0208 92349.308 128772.0498 99064.0551 51605.5364 51605.5364 31214.6262 84223.91 53236.9998 229176.8378 110766.6946 86259.9253 35423.662 62547.9189 49111.3773 49265.8616 136182.3718 61796.4652 227720.1063 39124.6501 55960.7604 54892.3396 108277.2085 113726.8979 163757602 xylanase Carbon Cycling Carbon degradation Hemicellulose Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 104944.4883 28565.6036 15424.0556 8330.0372 9523.3935 5528.6043 15350.5758 17207.0187 23944.8212 257120.148 15112.2803 12498.9848 10175.5966 10490.923 10490.923 11497.35 211073.5463 11870.0496 18493.6061 45535.3426 63130.3045 8316.5062 7406.8942 21155.8906 10194.0874 43933.4644 26767.8683 23859.1708 8717.0701 13284.8467 15376.6013 16874.4587 28282.905 112462885 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7084.3363 6742.2122 7083.564 13739.9686 7189.4104 4566.4582 4041.3033 3674.6381 25852.5444 80086.3767 117579.5848 16165.8674 7785.1739 5299.0374 4343.9749 4343.9749 5291.0172 14434.3911 12085.5876 4870.0071 6599.5304 2659.8958 5061.3858 15820.5193 3206.1193 16010.5855 19718.7655 21551.9334 4804.2908 9392.2706 6748.1873 3049.5508 7536.6281 225681209 chnb Organic Remediation Other Hydrocarbons NA Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 8924.2947 9446.1486 74898.6917 5610.373 2872.7925 2872.7925 5949.441 4493.7502 2544.3141 6465.4656 3908.3935 6491.8838 2950.4948 3962.3344 260221820 tktA Carbon Cycling Carbon fixation Calvin cycle Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 20681.0975 10604.3621 15473.4814 10977.7431 13642.4067 13320.0065 11678.1527 17193.7311 16982.6668 15415.2219 370355.4095 21504.5932 13407.4606 11488.1105 11129.5732 11129.5732 12451.3947 34323.6814 70444.2825 24196.0838 26906.1932 35138.5915 13594.096 17618.2227 21988.6676 15578.4884 33404.4042 142349.3084 17079.4131 8538.9233 9927.6172 13686.7493 11519.9196 34547.332 164456202 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4362.1721 7064.9734 3180.096 2968.73 4235.9959 5133.9114 129292.6896 7511.6214 6271.8435 3459.7005 3459.7005 9781.6454 16023.9118 3236.8724 5889.7753 2770.0325 4318.5679 5322.6305 2543.1706 3626.9529 3963.1947 7314.4253 374623928 ppx Phosphorus Polyphosphate degradation NA Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 13105.4735 11673.9477 2443.7613 5552.0392 5962.8027 3732.8343 10109.3266 263611.0905 98486.4054 6375.397 10799.5838 5734.4015 5734.4015 3901.9724 14366.3028 9983.9957 4763.4226 17940.2194 10805.5402 6149.3337 27747.951 8649.2529 5856.1053 18343.2897 13038.9176 12346.4456 7512.3901 8492.1872 38562.6488 4109.8326 19113.2435 209967214 norb Nitrogen Denitrification NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 51870.9901 27295.181 31833.163 72471.6361 241466.0682 355038.6967 39223.9308 32678.7999 35621.4508 80773.0758 37007.9933 40413.689 668882.4249 35555.949 110184.3952 206213.4946 72521.7567 72521.7567 24204.5944 47546.5086 28773.6489 65410.5413 166287.5875 47574.9124 42386.8232 21425.5135 65732.8336 30712.3164 81886.3977 102581.7846 58429.3787 29046.2048 57774.6299 50367.4553 56510.6808 23624.1914 332186662 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4135.9326 3144.7803 3824.2969 5062.0666 90621.7383 5896.6355 4353.2684 1719.2584 1719.2584 3344.7007 6620.7135 6144.295 3948.0193 4111.4455 8299.1127 2663.2259 2414.6726 5787.4651 2422.0842 10362.6633 7044.3647 2835.5591 3041.725 3588.4217 2716.6679 7838.118 344169219 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin blood disease bacterium R229 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 3873.291 4175.6469 3744.3594 30991.4042 3072.4599 6580.3728 5971.6905 179790.3319 5664.2917 3368.9328 4133.554 3802.1644 3802.1644 3700.7951 10153.1595 6394.3568 7845.0212 9161.4337 9097.0464 4197.1863 4392.3052 7356.1821 5732.6616 11286.3882 7237.6821 9498.559 4707.2 12837.0035 8204.8012 2961.3517 6648.4876 300789270 ara Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 17847.2587 74491.4636 8998.4951 26105.4973 9951.7623 23732.1509 26966.2165 48929.6088 26705.2927 38972.0247 46523.3352 177366.7241 5472.7646 18467.2871 16262.9382 11746.1082 11746.1082 11328.8941 38320.8861 16410.0513 20223.4174 30753.575 38547.564 9894.467 17708.6171 19108.4703 16118.036 55515.9919 36920.4008 29502.5218 87141.5507 23086.2693 30676.2974 14999.4133 11346.3493 260221578 cellobiase Carbon Cycling Carbon degradation Cellulose Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 44370.8703 54146.536 37960.5284 29545.5212 15630.5026 126450.5658 200800.9847 40265.7502 30218.883 66958.5346 50235.4064 752973.8419 45131.6032 96150.2251 47645.2637 56557.6003 56557.6003 32780.2514 56273.2328 35144.893 25784.9899 135259.9311 30946.5418 23901.1716 67670.0626 41914.7254 81953.962 134396.1994 76686.3653 104335.46 38051.1497 58966.0352 80051.5089 35825.0657 237997.9411 46133893 p450aro Organic Remediation Aromatics polycyclic aromatics Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 34527.9087 9548.2281 2757.7025 14757.2311 316253.9514 2400.4278 2400.4278 6013.1602 6822.8923 5099.5725 2142.2474 3285.3947 49609584 xyla Carbon Cycling Carbon degradation Hemicellulose Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6784.1986 47238.9357 8167.2217 129120.5876 58255.1566 33742.6827 21290.2496 8549.272 17267.3234 401167.0353 19403.6071 17821.8726 4023.0062 34907.7213 34907.7213 3939.4125 15912.9053 15452.3303 20111.7161 110042.1597 19029.9274 6571.8089 7282.7559 18358.4295 12435.6497 50640.4427 9785.2819 25066.9682 11468.0801 14587.655 73694.7184 16526.8903 18781.2974 326543900 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 4729.4132 4847.4259 4476.093 3181.5604 4307.9161 5184.6099 6482.6915 3283.3936 86110.7476 7987.9378 5185.9475 5494.007 2914.5961 2914.5961 3962.1037 11921.5661 9061.5474 8686.2676 8250.8345 10348.4177 3260.8458 3288.6387 8780.7615 3454.9859 14971.5395 10078.1286 8470.3261 3096.3436 4633.6051 4323.4133 4557.4751 11626.9079 33385627 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5228.8904 19558.4061 6229.8762 13924.5513 7174.3137 5657.4612 3951.4094 5419.7432 8098.6689 4802.9786 92655.6395 9743.6745 6409.9569 4093.8722 4093.8722 8190.8246 14665.8972 10013.5147 9136.4112 9475.4354 10783.7104 5793.3859 5340.813 12814.1143 5909.211 20800.796 10147.8733 13414.3254 5412.5126 5223.1757 14839.7025 4271.8328 12396.147 288568946 amyA Carbon Cycling Carbon degradation Starch Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 9939.0199 3252.5679 2791.2413 2893.1156 5700.9931 9240.4841 7670.4041 123000.6494 5035.8806 7739.6831 6470.394 9342.0226 11643.1552 5307.7102 5991.0736 4059.2759 7728.6185 13862.9757 5268.0853 24127.3864 2517.7695 6670.4171 3125.3979 2429.9437 2804.6025 67008218 cmua Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium 179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4280.1126 16868.2718 41041.9683 3838.1172 3121.8859 4705.7264 6101.0751 2849.8418 98285.375 7698.2013 4897.7038 4775.736 3760.2379 3760.2379 3883.452 6225.9366 3993.1922 8926.4118 4574.8647 3307.8678 8188.9919 2547.2103 8181.0961 8163.0248 6446.6578 3436.4682 32061.2091 4223.4538 2338.5566 295414360 PRI Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8899.3475 12921.8196 2264.0585 15825.9322 2914.628 4007.8304 4916.4942 2916.8123 61718.8708 5380.5858 4036.0039 7616.6519 3297.1275 9871.1918 5286.0882 2327.4809 2669.9511 5823.4914 2377.2429 4706.1264 6813.0487 2270.5528 3468.1412 3577.071 2773.5941 10745.4773 299123728 amyA Carbon Cycling Carbon degradation Starch Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 9950.6165 4763.2628 7493.6378 9586.5278 4897.3139 22803.628 15333.9859 2316.8766 2316.8766 3065.9636 16916.2705 23101.5358 10422.8859 5982.1455 4128.2695 6000.3661 35135.7725 13884.4304 3978.2978 5623.5603 34486.6649 4553.7985 25402.5069 20814.0788 115364090 ppx Phosphorus Polyphosphate degradation NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 19426.8631 12651.302 23892.6852 4901.0446 8741.3273 3353.57 9707.5696 7985.7846 3685.6194 53930.9999 3676.6883 9549.7866 10976.901 4555.6134 4555.6134 3680.4523 11100.5303 10581.5368 3977.3117 21937.8408 4416.7672 3500.7077 4298.7681 12498.9885 5251.4454 12081.0276 17198.5854 11647.3716 3738.8974 10034.4489 6616.4969 8405.89 16297.144 151302126 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulfatator indicus superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 115520.3133 7886.5229 7924.0614 16778.4754 22221.9223 48372.4001 95908.407 5180.7878 5307.131 9291.868 22007.2376 22007.2376 3066.3851 17845.0645 5728.8998 6243.2536 20060.5294 3205.869 9497.6509 4109.8923 15623.6186 6395.4849 9980.7571 5588.5527 4012.5412 4648.1573 404264235 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 17089.9048 13817.3889 73325.7362 14800.0961 5034.6962 6384.6805 20489.4616 18103.2766 11335.752 15673.1473 106000.4298 82517.8893 7366.5574 19748.3296 9075.1096 9075.1096 7349.0428 18506.4933 7404.1969 68920.0925 14128.6322 43149.4652 7698.3029 17531.1056 13480.1698 6180.6084 33698.9415 6377.2031 9369.967 10435.6303 36447.073 10299.01 5778.1195 6265.739 299744125 protease_serine_fungi Carbon Cycling Carbon degradation protein Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 31508.1619 127230.2686 4441.8541 13267.4847 13521.1247 10797.8085 62961.7837 9158.1659 20199.1786 30346.7473 9700.4726 293775.2408 33492.9562 22336.5989 40949.2739 14549.7824 14549.7824 27264.0125 32656.2946 28813.043 59891.2553 20145.7342 16300.3641 29544.9411 13178.0221 54484.7338 18990.0741 29438.2366 8112.3094 22619.8753 21495.7734 19889.4137 26972.1605 398210177 trza Organic Remediation Herbicides related compound NA Pantoea sp. YR343 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11403.1884 55566.0167 13755.2761 12187.4403 4625.5238 31708.9379 10859.0536 7096.8414 9428.825 13011.2072 19121.0529 275719.7699 24250.3554 11579.0826 12219.7104 9367.7297 9367.7297 7762.9204 32410.6399 25766.7672 52917.0433 80187.5934 12200.6751 8171.8351 9551.1532 27721.4678 12926.7499 61531.7191 44403.7639 15628.5562 12759.2457 13186.9076 36766.8606 11693.5618 27532.0781 70993930 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 6093.6856 2700.3533 3146.5003 4315.7266 4238.3185 2287.6785 69630.3595 4183.5482 3655.2215 3685.6774 6836.5473 5362.0844 6455.9568 4391.5605 4489.9245 2722.3871 3711.8864 7324.4368 2113.4845 9213.3625 6258.4539 2614.5847 4044.5421 4262.4586 2272.4779 7140.8754 139003254 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 12835.4592 2752.5714 3308.7149 3808.4424 92152.9869 3721.8465 3464.1419 8743.6951 5202.4246 3379.2794 6834.7465 8926.9592 5372.143 4393.1204 4250.8832 3868.3192 2760.3573 357410990 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 22446.2667 21998.4912 21629.7991 9580.4636 7621.2242 11238.3267 9699.7083 20169.7829 25852.1807 35007.2227 367750.8781 25085.4017 21834.9249 161245.1571 20262.6569 20262.6569 8594.2707 37336.5573 29507.9985 15745.6165 317204.6623 36619.7195 13043.3172 15428.5384 61757.4478 16673.7835 59626.7656 33681.0639 38134.2118 12470.6859 16129.7121 47198.9719 12096.3398 39028.3948 389932116 ppx Phosphorus Polyphosphate degradation NA Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 9156.3679 3389.7155 2885.8985 12497.1299 3752.6116 2900.7044 5399.8155 2058.6222 8010.6098 3199.6735 194561935 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 22160.6878 10144.3169 9434.9253 30120.4262 23357.7245 13155.0866 31937.6734 26622.1943 7189.9534 19179.8945 29953.1996 11190.015 316652.3251 26843.9737 28856.1134 20841.4724 14771.7572 14771.7572 11420.2366 42343.7782 25579.8615 11927.8783 83404.5232 25008.692 11122.3521 14530.4838 43502.7444 27305.1976 35852.0257 26290.3791 50937.7602 14470.5115 15249.5257 37613.8536 12541.1759 26644.6089 260772260 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 5525.2215 5591.572 7076.5581 7208.2645 4774.4956 6698.854 4976.5322 6966.2857 96808.9185 4762.708 5219.3911 7026.7287 2390.7108 2390.7108 3093.7601 10180.9255 4228.9689 5487.9217 5379.0974 2771.4237 3115.6253 6953.9583 3101.0382 10714.5359 5887.6293 8561.8108 3514.5951 4102.4611 3636.0285 3736.7157 39841.931 48131 amyA Carbon Cycling Carbon degradation Starch Thermomonospora curvata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora; 8964.0303 7020.9381 15022.463 6695.2734 5811.3381 7079.6585 5370.3844 8652.1281 7781.3972 182299.7699 18236.4801 9219.309 5055.8525 31071.1565 31071.1565 12057.8442 14681.5246 8792.642 15332.9248 13030.5682 7004.6133 8543.637 7191.8796 25900.6845 7366.1658 20208.5439 12135.4536 11971.4844 15239.8046 21272.7759 11081.0664 6375.1988 10430.2189 139478509 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 16410.3646 6355.3149 6084.9296 5121.5397 14374.5942 2509.5531 4251.5053 7948.0187 4937.6794 126539.8287 7622.0186 6224.2045 12752.1339 3819.1319 3819.1319 29794.1364 15990.7358 7983.7586 28339.3324 10217.5892 11899.1528 6751.4855 4865.0202 10749.0418 6411.2716 15127.6215 6863.4121 10328.7874 3587.5833 7420.7772 6796.9733 4605.0388 8504.4505 14389215 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16608.5834 8685.5466 6902.1603 8854.6551 7189.6469 13303.1487 13613.1713 14173.2017 12724.5349 8419.0809 202784.5726 21623.2597 14943.6612 12883.3436 113328.1896 113328.1896 5189.2205 22023.9631 13897.2848 13293.747 55621.2744 18100.6503 9293.4465 6739.3416 21845.7357 6382.9695 45396.8147 13803.1338 19683.9071 11193.3818 8972.6388 10528.6694 15899.0706 34678.2908 151302177 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio sulfodismutans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 54142.3322 25225.8825 40781.4566 21596.7909 5093.1514 17610.6297 105905.875 14409.5836 24486.5844 49360.6121 23842.0845 657538.3782 18178.5825 30177.1084 22784.4051 39062.5494 62185.8173 22283.9444 30325.5532 30730.5758 41332.526 44581.1291 28659.7569 46645.8834 83222.2139 29865.4013 25947.7156 34577.2448 76884183 pchcf Organic Remediation Aromatics BTEX and related aromatics Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 37230.9603 385527.1453 11629.1588 16144.698 23590.5419 24367.9673 79408.6814 17726.2129 37270.8341 17117.6384 539154.4445 39648.8206 29468.8826 98658.4614 19254.1032 19254.1032 47469.784 36425.1375 34355.299 29406.8741 39662.9097 28352.8973 21497.3955 19360.927 37492.5588 19842.7457 55715.9625 31366.5797 33453.5516 18280.8819 38428.3163 40066.9783 19541.6372 59888.6011 433606 norb Nitrogen Denitrification NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16234.8733 5511.0877 14939.4291 12970.0961 11317.4858 7476.9569 4038.1399 10162.5761 26801.6373 19562.8741 462829.4912 14280.3744 14112.0219 9644.5025 5655.0121 5655.0121 9307.9494 37215.0376 10022.7126 7514.7678 13393.8302 19751.8242 11124.8639 5255.0891 14344.48 5722.5289 21165.6786 14442.4003 15175.0122 6952.0108 7315.7832 6337.0909 6459.2975 16007.6597 255957239 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9492.1967 10930.7979 24005.6616 3127.069 7709.6927 7841.2683 34510.0162 3069.0609 105644.4219 4556.5311 10055.3272 9851.6099 5396.7205 5396.7205 3218.8473 53139.1892 8839.1915 9025.0883 122689.2322 2527.4892 5727.2135 7532.6749 3717.1187 18954.7578 9003.6833 7746.1403 3833.8097 5517.48 10559.6587 2538.131 7101.8796 253689416 pme Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6786.0152 12502.7412 5258.5802 32054.0227 8144.0372 2756.0511 11994.3847 3928.4043 11778.6337 15272.3626 7706.6008 269918.6007 36506.8499 19018.048 37434.6779 9868.9844 9868.9844 5026.3896 11995.654 9752.8475 7205.4659 8164.642 6172.6686 5484.7921 7859.7266 17742.4611 5637.7118 43733.5851 16401.5271 20542.9088 6470.2551 8738.3002 13041.0964 3707.287 7470.9344 1002869 exaa(moxf) Organic Remediation Chlorinated solvents NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 39021.8523 681748.3426 15439.6125 10020.3272 45317.9404 10975.1484 27870.5495 44018.8432 20500.6282 32035.1684 27236.8564 585558.4105 18539.3829 27937.5186 30799.9178 42323.1273 42323.1273 13731.0786 82449.024 28787.392 28709.8019 100337.8528 32593.9634 14709.0742 22520.5644 80246.6532 30036.7292 86618.1304 90900.2388 32934.7879 17679.953 30628.2334 52802.8129 24911.9148 74585.6213 41350153 urec Nitrogen Ammonification NA Saccharopolyspora spinosa superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora; 7631.2019 5595.8132 5656.5749 8477.8757 6165.1432 4625.6471 3454.8634 6966.5528 8147.8757 18071.801 143771.9471 7470.8795 5536.3473 5286.8667 8686.8447 8686.8447 7521.5025 17953.8518 7731.3471 7405.6837 6791.5921 8746.8358 3279.3141 4840.9991 12399.1713 5868.456 16955.1906 8989.7498 10090.583 4521.9872 50552.9586 9951.5521 5358.6723 23464.6666 114335646 cysI Sulfur Other NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 5116.6237 5619.1916 6938.2094 5174.3416 6932.3927 32259.5606 2627.6695 6501.4986 6206.8184 3453.2514 69476.9867 3776.3373 7718.0418 4622.3514 4034.6378 4034.6378 5569.9584 12919.4249 4573.4759 11531.7894 11751.8881 14177.0766 2893.4091 3593.1797 8160.6209 3550.2345 16910.8616 6584.8432 6079.9835 4012.5337 14138.5168 7252.4888 6769.2362 8970.0121 224600877 amyA Carbon Cycling Carbon degradation Starch Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 5745.3467 25637.2195 25623.5596 3064.5436 12224.619 9721.4647 12635.407 81927.1998 7485.1333 3511.0996 3511.0996 2504.5372 31084.5706 3558.3425 6954.1356 12081.8079 4244.4772 5284.4978 11520.5987 3511.7053 104191.6545 106056.6991 9036.9011 7365.0581 81007.2679 5651.1542 5288.0145 7266.5847 73763002 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30865.2094 20607.3155 13297.4276 19612.9099 7282.7986 15474.5638 18099.627 22508.3607 13551.1869 19243.3361 312715.818 12820.1584 20051.5362 12114.4349 34061.8529 34061.8529 15310.7709 45292.6364 10904.3968 26158.6198 86715.4048 17910.6342 9711.2069 22454.5652 14494.7799 5560.2779 30493.4866 11155.8164 16797.0421 8282.5724 70141.1142 14721.0755 7259.347 22545.4254 371958186 tfth Organic Remediation Aromatics Chlorinated aromatics Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 82095.7851 18590.6492 23386.6617 43186.6536 529437.0107 16483.3633 24996.1307 22553.2612 117839.0019 26090.7204 40310.642 24217.2297 505503.1874 32706.68 26755.7105 94248.2594 53910.143 53910.143 21397.8552 48402.3585 24065.8629 40319.1092 70118.5895 42690.8716 60672.4876 24264.3296 28814.644 24203.0537 96443.7477 37322.8072 59317.3618 28207.9601 30164.3015 61737.5923 29165.2094 31693.033 242277943 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 29540.8381 7301.6395 44262.5995 14020.4255 10448.9196 6861.8107 5332.6711 13912.8494 345196.8402 7865.7832 27535.8707 100700.5762 17503.4806 17503.4806 5398.6002 12588.0377 6364.3232 17219.6452 22700.8631 6248.1917 6375.1803 25681.6801 4455.7769 22795.2004 15971.0685 17624.2096 6384.0043 16432.3082 5558.8964 5308.2476 40668.4609 357423825 ppx Phosphorus Polyphosphate degradation NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 5219.951 3057.4526 3264.7164 4189.7659 4160.2457 3899.0256 2581.7515 2581.7515 6948.3384 5658.6573 10155.2001 5977.0093 4859.8307 6530.3159 3702.9643 14338.2019 7203.508 6784.1802 3837.6341 3341.9374 4811.5419 3445.4776 8549.2998 365884791 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 119537.1205 10723.4757 350741.9273 51093.2354 47187.973 25237.0378 31682.8321 87439.0432 18677.2827 134573.2647 64495.2044 38832.3168 1432790.9123 143505.3594 59079.0425 153872.1911 48094.778 48094.778 86182.3385 80650.3788 127092.5468 72692.2278 201331.9467 1156644.2714 23825.7008 59706.6153 186403.8378 140464.2135 296098.1378 162707.7055 74917.2595 42494.003 90418.9721 55801.973 23433.3297 135421.9038 379059290 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 6792.7257 14103.073 6815.829 21668.7637 7883.3596 6976.4298 5974.0783 7351.9152 3083.1422 3265.7132 10525.8263 6151.535 3850.6393 3850.6393 7897.6406 20856.9317 7679.3488 17218.4771 12450.916 11585.7443 5317.2008 4458.397 9908.6292 12231.7018 25394.7135 11033.5166 13336.5868 11885.0387 7457.7981 6672.6195 5678.8166 13260.9216 389721304 urec Nitrogen Ammonification NA Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 17471.058 14897.9473 7161.9286 9298.8833 16250.2192 6598.608 13678.3461 101892.2543 5898.1739 15814.2738 12193.6113 117324.0044 4633676.5601 13014.7409 10543.4817 6661.0216 54751.6814 54751.6814 5552.0113 47204.5376 14103.1481 15756.8427 59774.0541 19089.6504 65962.1426 8632.0897 26010.6135 6854.259 41529.3032 28584.1767 30219.4503 7771.0327 11720.1563 12019.0251 28448.8777 19649.5208 114540674 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 93413.2697 13785.4983 68429.0635 277914.541 34469.279 20189.3149 19543.579 103085.9129 24885.9602 33463.3986 52714.6787 77835.5598 1028157.769 104138.0819 80402.0962 52344.4872 53360.4036 53360.4036 35061.7582 86620.4237 61712.1317 182963.0871 155591.8642 119865.8861 60817.6234 95192.8178 58883.2185 54593.8011 441730.1685 88227.5722 107522.2236 26834.8082 78238.2632 71876.7314 42349.7048 109008.6008 158316361 cdh Carbon Cycling Carbon degradation Terpenes Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 89191.4996 15108.9171 7377.8466 61025.6938 8260.0022 37573.9065 23884.044 22775.6509 56473.0219 28647.4928 96836.2255 1873784.8213 47496.1547 59128.9176 27770.3351 24915.013 24915.013 50139.7119 76666.3487 41595.6177 22047.1838 45315.3301 17815.8402 42397.2378 31120.6481 92007.5127 46343.6804 90831.4583 42962.44 60556.9837 32877.7277 56534.7066 49560.6754 20418.3823 45963.2087 76577384 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7927.2412 7726.1903 3049.5176 4953.6818 2304.6451 5317.5429 6722.5406 4678.8033 158741.142 8283.243 5933.9031 4504.1953 4710.4129 4710.4129 4959.199 9819.2471 5744.6113 8200.8739 10537.1834 15816.2867 3218.4671 3925.6449 11091.7257 4300.4605 17149.3499 14146.1818 8008.3285 3472.9083 5980.3969 4997.4191 5013.5075 7924.5844 261280908 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6512.09 23435.9566 8455.8152 3455.9927 2692.0135 2398.6795 4407.9947 4882.3699 2401.5763 93841.5877 5392.3137 6746.928 10308.2627 5157.1745 5157.1745 3653.8567 10798.8372 7941.2463 6310.2978 7767.0601 3519.5328 3457.3602 11643.2006 4531.0873 10410.4862 11757.0124 9411.9549 3426.5975 6451.5089 5952.3703 3607.5659 8439.7317 84502425 alkk Organic Remediation Others NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 45340.0844 26741.7415 11673.8529 14081.0099 6567.3866 5946.7034 3771.5735 9750.1473 10721.2593 6623.2951 295237.2611 46373.2082 13071.9845 8367.9908 8136.7662 8136.7662 10217.2439 27726.6085 10011.4105 14274.4652 14537.4806 17853.701 18137.9701 6821.3584 12550.8097 10226.3441 315656.1513 4516.1218 16711.6889 5475.2201 8295.288 13754.4967 8738.2695 10879.2037 121530929 catechol Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 50714.2873 1160668.8187 14470.0058 172224.812 22291.6914 8900.4872 40981.278 64436.3506 24284.3826 71620.151 156514.6265 81886.803 1192284.5533 131191.7951 48036.4846 55125.4524 188177.9549 188177.9549 16547.9604 65154.6578 47067.516 51953.4979 113643.8929 26766.2454 30206.853 55128.3708 49136.574 81276.494 101733.3209 71875.1225 47711.037 30498.0707 47708.6676 45025.6547 41073.8025 286894.0052 222086651 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5062.1504 4570.3872 2802.5826 4882.7857 6500.4955 4540.8038 75153.768 4632.2973 9930.136 9930.136 12203.2563 8244.6739 4784.5979 10639.7937 8172.7077 2550.6059 4163.7541 6645.1439 7149.6908 11110.5562 6620.3203 5769.7096 2298.1964 6110.6129 10177.6773 4367.232 8073.5454 404271360 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22818.8351 8224.6681 15505.3379 5359.4004 12743.1309 65241.2576 29921.9719 47811.1309 33343.2662 207032.2099 26840.6664 42895.0999 24187.1776 12151.8088 12151.8088 9686.7871 17678.9719 55647.0092 10498.1741 11641.2891 15339.0093 19761.0467 14467.8487 111858.7046 13599.4203 90438.9086 25935.2315 24398.9427 22502.3958 36973.9524 30402.4549 21528.1688 9348.6106 330994236 cpna Organic Remediation Other Hydrocarbons NA Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 47917.9254 1912347.4684 49052.9617 4927.5152 2249.5728 5843.0538 3361.917 56770.7526 15386.3698 6246.8669 2680.5069 2680.5069 5114.4666 11409.5622 5706.9815 8150.0967 22349.0749 11290.3143 3681.2183 5134.2644 9296.2552 12633.2456 15086.0276 6492.6826 8290.0157 4283.7072 9658.0896 7237.0864 4862.4455 19531.5314 21220950 nirb Nitrogen Assimilatory N reduction NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 10779.0244 29894.5662 13013.6891 173472.6815 4213.0382 4669.1388 6063.5106 6257.4372 8345.6758 5576.2741 137985.4621 7424.6464 7519.95 5086.4391 4996.7619 4996.7619 4949.0691 44614.3121 6014.0934 7088.9195 15308.5728 13034.8027 13971.6723 7359.9989 7984.2053 6982.5377 13421.1262 4925.0597 10479.0306 4206.7979 15772.7653 12130.3724 4703.8882 12244.5959 366160899 amyA Carbon Cycling Carbon degradation Starch Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 25132.2158 10162.84 14819.5063 6452.1837 9391.8628 10645.4829 7360.1956 5739.2206 10117.0677 13005.1632 6954.0778 224722.1561 95620.3885 15102.7794 6913.245 10468.5547 10468.5547 17092.9283 20491.2396 10781.6443 9477.7236 13025.6492 30790.8539 8394.4576 6329.3404 15690.467 5783.279 27442.0155 6062.4768 22905.364 13138.5487 9189.1311 9409.2404 7024.7801 19657.6057 336391733 amyA Carbon Cycling Carbon degradation Starch Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 4766.562 5807.0151 13077.2612 3912.8396 5040.3676 4583.7254 5098.8994 2306.7075 2306.7075 8086.8621 3180.513 3091.0182 6765.8448 11810.7836 6111.347 10235.0787 2519.3689 3312.6719 4880.0898 2696.9023 6609.1035 256820252 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga ochracea DSM 7271 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 39188.6549 10516.6544 11967.6336 12524.4299 11407.5301 8459.9419 49346.7303 17107.5325 8408.4065 456485.8258 25245.2072 17655.8251 9890.6388 8952.1849 8952.1849 12822.8184 25281.1826 20387.1159 23985.3739 22999.12 19766.1038 9132.0529 8337.7461 27824.3718 9420.9818 33941.5163 22134.5581 21965.7153 8073.1613 11673.4683 17027.8117 13414.7646 27761.429 109290253 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11029.0704 790222.1536 6568.5552 5117.3862 12355.8619 12187.9693 191280.0037 7689.8559 11459.3846 11543.1616 177762.2056 17915.6823 19985.2339 18666.9982 16786.4092 16786.4092 11572.4022 22354.0635 19654.0736 13133.5848 27526.4434 29142.6722 19473.1508 7281.3383 13272.4365 18195.4957 27700.4678 13197.225 23855.0969 7301.9753 12709.0085 10801.1565 9176.3019 12034.267 254821614 cysJ Sulfur Reduction NA Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 6544.1274 105640.9569 21079.5913 3364.9099 8620.6175 9340.4658 5648.2528 158745.5466 5225.9292 7749.0607 8992.6946 6277.1062 6277.1062 22524.7473 7281.2476 3738.9074 7820.3985 3689.9071 2650.097 2424.0162 13047.3084 21635.8015 9000.1761 14884.4746 11700.405 3338.5561 167105.1527 35358.6841 10728.5808 15342.282 307095248 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 7856.1796 5462.6936 20309.974 6818.4795 3156.113 3129.7616 10588.5091 2909.2617 102744.4997 4653.4192 6549.745 5107.2632 5107.2632 2765.0038 8971.3143 4558.3602 27587.9965 6764.5781 7594.3403 4527.5716 7624.6748 4509.8068 12476.1401 7418.6177 6169.4155 4882.8443 8762.0912 7905.8911 3098.3987 32307667 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9771.2821 2123.7504 6624.7488 7461.8157 16335.6545 81834.0729 8269.0604 10257.3943 11428.1945 5069.1347 9785.2407 8746.716 2973.3311 9351.751 6567.1416 11327.4352 4972.1451 41498.9367 5268.5398 2988.5744 5111.0104 24104.5892 126627156 Sir Sulfur sulfite reduction NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 9380.8385 253956.0527 9387.6048 35385.4441 20815.1828 14062.3849 10486.0587 2977.4278 9115.8477 10531.09 7252.3966 215937.2416 20216.7377 14653.0692 11213.2913 11419.8314 11419.8314 19280.9241 21012.2854 13123.3073 12227.1949 8926.3062 11699.4692 5130.1604 7081.7368 27573.2367 27367.591 25716.6303 30076.4046 20279.2603 10628.0217 9281.0554 10517.5065 15475.0363 9929.6005 222138074 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5411.519 2088.3221 2088.3221 3486.3115 1722.8113 2147.5814 170091408 Dyp Organic Remediation halogenated compounds NA Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 3766.9498 13530.112 3222.2304 46386.2191 3752.6858 17791.9527 3242.5741 140179.6428 6396.5464 4173.7427 5529.9125 5529.9125 4489.4482 11024.3211 5239.0081 56964.176 6326.0467 5083.5348 5480.0444 6967.4813 7726.2493 14404.231 4881.4338 11291.2309 3161.7256 51270.6568 5954.7951 3129.2086 5494.3498 94311912 tktA Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 9402.7572 5764.4834 7423.1175 8160.1651 15199.0995 9433.404 21366.4103 4942.2311 85426.098 6886.5114 6307.2908 7256.7423 8866.2635 8866.2635 11880.174 16566.5618 5090.6403 8088.1368 74142.5862 17634.4276 3054.1557 4989.7729 7064.0639 4268.5601 6596.189 8398.5593 2940.4746 5442.112 7364.5182 4233.5973 110082653 nirk Nitrogen Denitrification NA Mesorhizobium sp. NH-14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 18493.2022 10835.257 2224.3751 3919.1255 7826.256 79756.3322 3168.3944 7057.4177 5352.6544 6521.0096 6399.9079 10448.0092 2410.1589 7334.678 4400.83 7467.8124 2780.3135 2681.1945 3998.0006 2357.4896 5801.3852 60476326 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9321.3238 4475.5404 4146.5585 13873.1557 9992.853 4089.5105 4012.1382 9779.6078 28378.4715 4781.1527 139225.2587 9817.0274 6439.6664 8550.225 11027.2994 11027.2994 7173.3046 23037.8324 12412.9304 12470.6379 72057.528 11381.7962 7921.1012 6571.7481 20575.3277 8685.7645 24406.9199 11482.6164 16061.1543 6123.6394 7873.4442 8266.6875 5914.119 22243.2259 291440333 amyA Carbon Cycling Carbon degradation Starch Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 15692.3554 15971.198 14990.2242 14679.12 11718.1957 10095.7727 7583.9839 16748.9535 12405.7261 265455.9347 15149.2276 35671.7405 12300.1791 7896.3269 7896.3269 11442.0457 30724.9021 11475.0586 12608.4368 32517.0407 15883.5576 9294.9271 7093.3795 19740.533 35528.9722 29014.8508 8600.2471 17472.3266 7973.5425 9039.7206 10934.7826 8258.7202 13117.6803 149783387 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5730.9387 10235.1927 2418.3582 268590924 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 13255.4844 29181.8683 6941.1053 7033.2398 15278.288 166541.3016 9870.2847 16077.8273 16997.8283 16491.2874 415535.8868 18167.0745 14039.1461 132736.8141 11398.3895 11398.3895 9618.0064 27955.6377 16187.242 9708.5732 28156.7135 17909.6195 6917.12 12979.0041 19199.5493 18246.0136 35154.3005 11845.7876 16892.2498 8539.7623 23553.8948 13996.5539 10393.72 29337.7547 89145100 ppk Phosphorus Polyphosphate synthesis NA Microbacterium phyllosphaerae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 19712.5042 13504.3999 11655.723 5415.8012 5711.3795 4842.9662 12587.5678 13675.8118 62799.396 7486.4207 37133.9571 11753.7541 18841.2482 18841.2482 11955.8214 114447.1236 7216.8081 18059.6848 39060.9117 346806.5732 19073.7709 127811.6771 19762.179 21916.1441 28838.2982 15354.3495 13893.0918 39083.8483 12508.307 8462.0973 100482.5916 363719147 tfth Organic Remediation Aromatics Chlorinated aromatics Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 138789.4947 150695.3057 58071.7564 56978.744 9453.8994 19753.0247 29988.7756 26896.9236 70470.109 36169.275 94245.3793 834206.0754 51443.8865 43595.8658 61401.2118 62854.2554 62854.2554 234749.3647 66790.4897 101652.7091 209912.8745 57625.8734 121260.7609 21800.3867 48335.0229 37824.8243 136972.6281 76218.5798 78924.1872 47746.334 16378.4131 71266.9434 62802.7954 114367.0345 14513.6688 386000764 nifh Nitrogen Nitrogen fixation NA Methanosaeta harundinacea 6Ac superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 156603.1145 98418.7101 62976.1983 24380.1362 36085.3725 6210.7755 14566.2762 93365.4611 448393.3758 74830.8909 104277.7581 42529.8741 813820.3648 80474.5652 80133.9219 30973.2254 47430.0649 47430.0649 53553.6359 77335.6266 30156.7052 162682.6171 246820.8805 148039.9722 51650.4546 89971.2489 59453.9385 70251.7694 224828.2908 73371.107 97159.372 96342.7543 86510.8375 172026.898 42644.4782 58079.6669 126735829 dmdA Sulfur DMSP degradation NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11556.988 4426.6129 10735.2041 1934.5614 1934.5614 6339.1796 4935.1917 5889.2141 5355.8864 1903.1442 3547.9444 4983.7434 1872.5444 2266.6688 4215.1043 356481878 amyA Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 4661.479 8364.1334 7286.106 13087.1018 4113.094 5450.2001 4403.5405 4403.5405 104542.6539 3417.3219 3402.915 10848.6733 13276.0862 8418.9157 3497.0009 6167.2911 3455.5745 73535242 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7327.1204 5575.6156 5271.7105 6351.6549 3024.52 3361.1351 112783.1613 4659.4197 7767.6643 3677.6943 9626.5935 5712.3427 5090.4264 8259.4069 8002.8032 2865.9147 4115.9447 7448.3788 4292.3678 13158.7376 3752.6374 14009.1758 3108.6522 4850.3886 187823.2661 4133.9573 7974.2306 206565176 ppk Phosphorus Polyphosphate synthesis NA Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8825.1765 8414.0102 2887.9684 7718.153 3661.0107 10077.0214 10077.0214 9032.3874 7245.0997 3851.8676 5176.612 8480.0906 6032.2896 11614.359 14513.6568 2441.5355 2535.5934 6520.56 2635.876 61807988 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5015.8775 30166.4652 6558.6326 9228.8899 6690.617 6080.4103 4921.8778 5751.9738 6002.8416 72563.4205 6002.2555 5260.4027 8268.3258 8268.3258 5018.7587 13235.6059 5164.1779 11809.4798 8187.5785 4111.8389 2983.4666 7471.1425 4508.1122 11874.2642 20263.8399 8688.5078 5236.1134 3827.1943 4918.2995 10824.0311 6253.9919 147920067 nifh Nitrogen Nitrogen fixation NA uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 12544.7766 14279.4536 9852.6569 5860.4944 22799.1868 5851.455 4954.3535 5844.3034 6699.4884 6346.6652 23633.717 8103.4653 133797.6721 9682.2134 18921.1845 16339.9302 7595.3815 7595.3815 3897.1133 16685.4607 9755.0632 16589.015 10065.7145 12521.2937 5802.3925 7212.6589 21894.7929 7879.5558 23195.86 14530.9442 15421.3966 8630.0059 8774.6887 6525.0707 5602.6608 31063.1451 186465480 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 4664.8186 6670.5494 90420021 rubisco Carbon Cycling Carbon fixation Calvin cycle Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 5738.7599 2935.0455 33320489 dsrB Sulfur sulfite reduction NA Desulfospira joergensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfospira; 7823.8389 8656.809 5347.4334 18249.712 4874.6545 7924.1254 4799.4548 4974.8978 8423.5484 5376.8783 188854.2849 5687.3864 7308.7416 14624.34 7444.6326 7444.6326 3230.0161 17006.0239 7615.0487 8268.8162 5557.7214 5432.3963 15701.8197 10314.8353 4168.8611 18194.165 9401.9808 8581.4345 12686.8034 7410.8348 10883.6296 3831.2818 50058.2025 193087361 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 18284.8131 12927.036 13045.3118 14622.632 20870.755 14097.2276 24029.9922 8884.1859 13334.7996 19268.9177 8544.4771 314345.1783 23695.5037 15611.4342 10852.7905 10980.9644 10980.9644 15592.4414 24600.245 21615.8429 16444.4015 17969.9863 19891.535 11384.989 10283.6274 21102.2772 17750.7584 47731.0241 18044.0896 61090.1351 7627.3241 16645.676 13711.1566 90920.6712 29935.8471 254431342 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 147344.7264 20978.3333 25382.8927 102430.7258 69974.2197 46415.8149 32280.7659 94175.8948 51286.6964 52128.9946 126743.6833 163680.3462 1554408.1513 59425.0982 91453.6216 87000.7714 91995.9716 91995.9716 51349.4971 110177.2893 63875.4015 173921.3386 111643.3388 45152.5198 44635.8569 78316.859 99746.1809 46698.9371 135922.3747 137455.5191 82420.6115 48389.9898 52707.1476 81064.2789 25815.2012 73282.6869 302036197 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 24723.2975 7038.2832 29359.0222 31879.8525 11257.4245 179694.4741 30530.428 10665.8286 31427.7512 22700.1457 21926.3772 596521.0227 21088.778 25960.5178 45868.0255 43592.4558 43592.4558 12207.9129 50062.5708 25085.032 46625.8044 35541.9172 43272.9706 12842.9556 62233.6976 29170.25 97747.454 423202.9256 32684.6569 30946.6716 18002.3455 27880.9932 42511.1851 16949.8018 22389.0548 357590453 alkb Organic Remediation Other Hydrocarbons NA Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 30954.9866 35052.3593 28052.8304 32627.9632 10956.852 8244.6019 52163.4728 29833.8056 20872.148 35800.5531 43121.6748 469379.4249 63130.7647 69371.462 56866.1495 169792.1758 169792.1758 18866.5482 47872.277 19032.3183 24960.5621 186370.3928 21665.5997 137486.6592 34200.643 63590.4048 18849.2849 129648.1685 36885.4454 62004.2336 11865.5702 29958.5459 39525.7153 66136.1701 35606.9227 158314713 bphd Organic Remediation Aromatics Polycyclic aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 132222.729 114113.7906 42863.3209 102020.4797 27809.6122 46904.8433 94217.9159 57806.1363 30574.8656 65358.7005 73507.2309 1046528.6973 111835.209 81725.4223 98631.6299 109831.6624 109831.6624 80220.7444 80807.2155 49542.0455 77834.0927 173721.3959 421363.2288 82301.2458 178387.8159 284602.5598 89704.8317 177853.9023 87529.8727 91801.1651 49173.2446 102572.773 81221.09 48701.6337 331309.7594 300390406 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 10590.2663 7701.1491 8683.5625 5470.1177 3162.6408 9462.9349 3288.9605 6359.9965 5957.9745 10261.2375 86338.0187 11172.6825 6707.5322 5956.0437 3306.5921 3306.5921 5972.1677 14456.5282 8445.7273 5832.8997 8991.789 9836.9005 4204.1555 3751.0191 9363.2074 4079.9175 96801.7899 7240.6645 8417.2441 4005.2821 6286.1875 5823.1065 3301.3597 20051.1859 359502334 cpna Organic Remediation Other Hydrocarbons NA Sinorhizobium meliloti CCNWSX0020 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 13672.8695 10945.277 6649.4631 2992.3825 3975.1489 9328.2877 5887.988 4750.4491 7131.4889 3207.1285 5986.4127 7438.3121 4436.4391 3333.239 6561.102 3925.5967 36480.4893 8122.1151 7143.5492 3314.9 5608.1975 11984.0056 3039.9527 408779959 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 15092.8204 12447.5028 12716.5067 4368.5497 12086.7373 12543.4923 10938.0279 12996.0832 38829.6894 12288.8208 279690.5786 14349.1391 16696.02 10370.667 15851.5498 15851.5498 6987.2773 31400.0266 10764.6792 13769.7195 44569.9426 32503.5178 11445.4187 120319.7704 18201.7734 56892.997 40687.9479 24480.6362 26365.036 9090.2695 13511.5151 17848.0917 11306.3994 79605.8108 126738786 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 21559.2775 13693.3373 11905.0072 12206.1852 10912.2769 9134.0676 33759.9343 14181.8347 25291.6296 21010.0414 16765.3388 338453.264 14873.9101 31170.0259 41968.7543 29080.1489 29080.1489 12303.6536 45886.8844 19219.1501 23684.242 49631.6303 16802.2624 11917.4799 53425.1492 25049.2166 45642.2479 73388.4427 26414.7618 30637.3792 16062.132 25730.6882 29156.1365 42603.5055 12627.6105 325298780 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 4941.657 4745.1616 7295.5763 4051.4007 3133.0835 3691.0448 3904.7093 5881.5648 2466.0053 128330.667 5333.5764 6611.2246 4098.3143 4038.1454 9074.6707 8362.6217 6478.0427 8077.6965 6337.0256 2957.1563 3311.168 6968.2169 3095.9021 12995.0027 4603.2096 6662.8623 3539.727 4627.8248 6540.1412 3626.2713 7623.1554 226834050 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 5770.5037 4201.0408 2634.5463 5506.9448 3327.1106 6190.2579 5788.7367 105003.0774 3519.1081 10655.3975 9600.3459 3845.3481 3845.3481 5963.4673 6567.594 3479.6806 4619.5152 13575.7778 7393.8878 2974.6664 6562.4534 15939.5473 3350.7958 7355.4643 3875.6612 7621.1541 8218.1493 4484.9667 11293.5057 32474.7714 182416080 pme Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 102602.5883 65799.8478 73191.4111 112220.8121 47208.7948 49584.1906 81106.869 106906.4837 101041.5757 133924.4506 70731.852 1799643.1094 56596.2755 95552.4589 97773.2142 83197.3999 83197.3999 73880.3559 100156.6553 78209.5357 105603.6749 85839.5081 63169.2239 33209.4005 74507.3994 216024.506 62480.4942 166240.1121 84392.0111 113461.1194 38122.0897 59262.5603 68912.6174 37449.8331 38772.8377 171464945 mer Metal Homeostasis Mercury Detoxification Dyella sp. Is-D134 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 33922.1237 13819.41 17897.3824 11960.404 12434.7534 24455.3554 8107.8703 13421.9051 15463.4564 11761.0209 235624.5384 15658.8491 17296.4011 13595.1603 9484.6342 9484.6342 8381.7755 15688.9491 11747.6302 23441.2695 34453.538 26377.6116 9032.2056 10301.2862 18576.7682 13522.232 21789.974 16756.9673 22887.8926 11686.4192 12695.7556 13366.9305 8093.1662 25610.4378 325261967 phn Organic Remediation Herbicides related compound NA Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6120.1372 5817.3038 9934.2083 8889.1991 3742.6645 3568.4594 3528.084 4464.6952 4785.6455 2899.0959 132841.8007 7489.7353 6975.8394 4720.6528 8765.9265 7057.1061 4904.9837 6579.3074 7484.2482 2940.3104 4503.3922 8343.673 3709.319 11385.8307 7866.0737 8698.8074 3335.9022 4850.1432 4589.5744 3270.1098 24802.8911 377815426 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 4707.5982 30483.8186 6225.3693 6340.5331 4174.2969 2554.0409 9264.1901 4035.0922 13206.6708 4035.7386 10995.835 3041.0842 10279.9764 5172.5656 3061.5381 2710.8148 4217.4241 18242.0396 7832.5199 389694474 urec Nitrogen Ammonification NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 14103.4069 10059.6771 18414.8022 13292.4229 2874.8071 3317.7827 5246.8643 8354.575 8796.9803 27712.2115 215232.7979 8021.676 16984.6037 33441.9473 15561.0691 15561.0691 9270.9386 28777.8904 9020.3315 10130.7384 16629.5381 8308.0996 6499.1465 15105.4299 17543.963 10647.5012 24783.1514 25080.1672 27863.1916 12980.997 11416.4268 17207.4378 6028.5388 15281.8347 5441780 cumc Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 55880.6165 57772.428 43092.5991 101544.2352 12235.1382 14987.748 16908.4467 7737.7033 17033.2603 587500.9379 46486.5917 592205.0788 50715.2151 22826.945 96717.2875 24794.9452 24794.9452 93535.6267 37226.1902 18938.9095 34011.9896 45893.3734 35418.665 18155.1232 38064.9152 26149.2527 28954.1624 57853.2715 27260.8766 35952.8491 26206.4479 24082.9922 23114.1768 14473.9735 92936.2022 255957055 Dyp Organic Remediation halogenated compounds NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 34993.3541 43440.1597 7324.5294 56853.6091 5181.2435 10131.2468 10663.5898 15404.577 8964.0483 17981.7755 13293.8688 188771.3989 9310.4131 12110.2856 14882.532 33044.6119 33044.6119 12799.5813 37740.1025 15037.1428 9557.7827 20306.8904 6795.4802 8600.7525 10763.949 12874.9599 9054.9145 60345.0474 11691.298 17918.6388 7731.5472 15566.446 15290.1451 9389.6583 43806.6697 154367883 one_ring_23diox Organic Remediation Aromatics Other aromatics Pandoraea pnomenusa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 4182.399 5641.6459 9206.9468 5464.5375 4583.1942 22698.6437 10271.7998 1203357.9199 8038.0621 8282.3174 5042.5928 8530.2858 8530.2858 2499.5931 9838.0715 5003.3062 3674.1497 6403.4856 6135.2819 7520.0852 11277.1483 4572.7534 7593.743 3172.7211 5513.2346 4548.5466 2298.0639 12067.1748 325676599 ppx Phosphorus Polyphosphate degradation NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 33832.7327 1416829.1109 17717.0739 7033.2971 10395.9009 9275.1182 9592.7244 43876.2932 6754.536 11407.7491 7635.8869 13894.3162 13423.2488 115054.5951 40215.6464 40215.6464 5329.7468 28849.7315 7961.6072 76012.9485 10614.0597 4641.6857 3247.4516 4942.0858 8845.636 11013.8091 17894.8498 18250.0414 8703.5422 22063.4841 9542.7353 17973.0368 4005.1861 6902.6898 260414511 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8198.3931 19665.6581 3757.8209 30814.85 24451.7488 10209.1776 634056.5711 7393.1225 7885.6713 6222.0313 11583.4029 11583.4029 5106.9859 12734.0353 13349.9224 94479.57 70131.9867 6508.9678 3687.6934 3736.9444 10337.4993 8322.3611 14714.1297 5967.3527 8938.2119 3377.8199 4485.726 6178.8108 4771.7269 20699.2331 315499629 ppx Phosphorus Polyphosphate degradation NA Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 4326.9757 1478585.0646 280963.5441 44265.7832 22715.122 31586.8528 7715.9262 2195.0151 6720.0875 4295.9394 3679.6808 156053.3525 13102.9358 10349.3548 22904.742 11319.5485 11319.5485 9178.4196 7587.8295 8755.4691 19220.6004 6165.5953 25735.7925 5742.7931 12678.682 12157.6479 18471.3672 7047.5543 11398.5736 5587.6685 5085.7248 8083.1926 126659614 phn Organic Remediation Herbicides related compound NA Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 23048.7748 50580.1707 10144.3821 6786.6018 24076.5346 7238.9219 46626.2292 6773.0719 9670.7351 43403.235 22573.2233 27106.5847 184868.6785 30347.6577 18588.193 17426.0052 14271.3919 14271.3919 5900.6 15929.8336 8615.4619 14635.768 11336.2166 9115.8963 5552.9655 14298.5204 13623.528 5900.124 31881.4839 14741.0904 13395.8618 27842.9083 14442.124 8779.5893 3009.008 6751.2844 288925922 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 18139.5436 213288.9909 5795.7129 8408.781 22128.6279 21412.6418 28307.7273 9738.3754 38553.4224 18841.1367 25984.2015 390189.5629 22870.1311 21527.0535 24139.9451 11867.7766 11867.7766 25665.3648 47117.0145 14715.63 362151.2028 118249.5612 30099.5725 9968.3709 14063.3646 14918.8003 26302.6743 115971.6165 12559.5207 17184.3581 13404.7216 21637.7056 24930.8286 19831.9335 34640.7408 242825658 protease_serine_fungi Carbon Cycling Carbon degradation protein Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 11668.60505 22192.7324 22014.8544 21821.6127 7024.1602 19069.4775 17527.0498 13577.16055 11075.73705 11193.55905 214031033 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6146.189 6154.0684 12024.8678 15554.3739 24382.5272 7257.5694 5843.2124 7875.154 8524.261 5703.0242 133299.2718 8473.6621 7617.0734 4722.3372 5299.9944 5299.9944 62235.9138 13538.394 26856.6726 7840.2081 10292.6045 10164.3769 4413.5797 4628.8876 15485.2934 7902.9818 17972.703 38476.4739 17755.9169 5698.5612 6330.5154 7935.7364 4517.5198 10427.1276 145588415 tktA Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 4782.7032 22935.8101 26281.0883 14039.7321 125487.1752 15993.2433 7836.2989 7836.2989 14552.8437 87980.6758 42825.8937 31570.3146 4430.3612 276741.4027 31543.7332 10523.7482 6586.7182 13984.005 33626.1644 18722.1957 13764.9298 5028.7105 15935.0146 12457.2186 61557.7204 97615.5913 219939174 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21352.1019 90760.4639 6580.1725 365641.2879 7293.3063 8734.6888 16268.4187 8147.4713 55999.3762 45575.4733 17362.7401 269799.2765 30116.8869 21149.3375 73101.988 25224.816 25224.816 18028.6753 43123.7076 24140.7111 12600.4587 21332.7373 13442.4563 8740.6219 22011.9154 22199.2452 17246.1652 27568.6581 18456.5289 21733.0961 6614.2288 18295.2187 42140.5658 8921.1016 27363.0162 326198195 ppx Phosphorus Polyphosphate degradation NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 126746.4965 17040.5979 269333.8162 27361.5736 61366.3293 53181.3303 42460.6161 281167.4067 36396.9605 32292.0596 40719.2104 52687.8907 827300.9963 148632.982 245044.6794 80173.2505 28716.1773 28716.1773 42871.4986 56492.1645 163192.4896 141647.013 136313.2986 49045.4751 42210.82 28606.121 61047.6737 65556.5719 272541.8569 74276.5477 54406.8292 26566.3008 40176.9868 48636.3801 21022.8103 53421.0492 323364938 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 13708.6197 8959.748 19737.6531 20274.9794 6303.8035 10253.3196 14319.3208 9683.6544 14843.9252 16897.898 7973.7427 438967.013 18877.1941 15352.3883 15830.2165 9507.9637 9507.9637 11975.8614 23011.7663 17498.2789 18865.9664 25626.3172 23054.9929 10321.6915 9519.3254 23587.0313 7254.5875 37831.6533 20016.6749 23334.6845 10367.1563 11766.5006 11371.4825 7444.0912 29347.063 46204754 Sir Sulfur sulfite reduction NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 129525.4369 10994.2874 5399.8771 7268.8649 41635.1074 4203.3526 3370.4878 6984.7374 8545.3111 3398.6028 3398.6028 3875.6837 5638.9713 5492.499 9137.6552 4015.3348 4955.2137 12787.0677 6993.7463 14529.7657 6340.6541 97954686 nirk Nitrogen Denitrification NA Ochrobactrum sp. R-26889 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum; 10009.097 6597.1249 8347.3197 16223.9081 7443.4945 8851.5258 3433.6785 9133.9277 12740.525 4083.0093 245295.4887 11383.392 10004.0899 5619.3711 4958.0941 4958.0941 12988.6956 16787.4737 13821.5275 24120.1694 21975.8173 17732.5453 7997.6475 6892.9026 18845.7906 7641.3603 27564.5736 19451.0052 66216.8163 8151.5453 13228.9463 11728.9293 5067.7072 19739.6189 389846508 amyA Carbon Cycling Carbon degradation Starch Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 4840.6506 5307.0114 13469.5585 7081.184 2699.1475 2657.2598 5034.2119 7195.9323 123896.9824 4462.1858 4872.4615 4264.1778 2818.7662 2818.7662 3774.4379 9946.6921 12138.7488 4857.6951 6726.9857 8771.0349 2875.7857 12960.1035 3355.0004 12368.7906 5484.7172 7736.2108 5623.6184 4796.1204 3542.4734 2361.963 8470.9066 364002961 pme Carbon Cycling Carbon degradation Pectin Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15193.114 10732.698 3047.8148 65823.2379 4556.647 8061.3383 7291.8542 25721.2699 280982.9148 6784.446 11749.9688 15929.5404 8635.9483 8635.9483 6447.6297 167979.6911 4366.4234 20884.8354 10523.6814 6669.9086 5961.0146 13311.8996 9549.7524 8097.017 23463.2991 67747.6411 21657.6943 8273.9253 9689.183 10221.5588 103997.7294 25666.4775 296164835 urec Nitrogen Ammonification NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 271598.1941 12261.7362 408949.9179 130019.6945 1360692.7152 73599.8056 63339.5714 213933.5545 78899.6612 130155.1713 311425.1216 176533.4094 5743480.7751 336704.8915 156972.2978 315644.3127 200867.2975 200867.2975 101631.3279 206120.8515 91141.8895 313766.4903 250510.7808 273683.1454 96045.6864 102933.2067 392090.4985 216620.1987 419879.0345 222507.9304 191211.0326 128314.1617 130283.2019 172053.684 76614.6134 160180.5847 88702641 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 14208.869 159240.2705 46390.1322 6525.7977 6237.9779 5722.31 5865.508 10056.4322 12952.476 16293.8811 168332.1063 13263.3249 58850.0926 16816.5789 25561.8993 25561.8993 6532.9039 22897.9831 21911.4669 4594.6261 40677.2142 5293.8174 5289.0579 7964.9289 12817.14 23416.0596 30254.6048 22450.5777 14541.3951 12413.8828 22381.8336 10158.8658 5133.1593 28869.2701 146341448 aln Organic Remediation Others NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 40778.9011 13657.2177 7931.2291 47611.087 20327.8375 8058.8641 7094.1363 11961.1534 17847.0951 9690.2915 13730.2616 20514.6628 227571.8932 12285.6341 18642.5235 17019.3775 11473.2741 11473.2741 11764.4085 19071.9355 14264.6722 15310.626 15856.4614 18764.1065 9312.8125 10601.0278 21712.997 8554.1187 39720.8621 39609.975 48325.8768 13688.1624 29539.3735 26399.9435 9521.7437 16540.8861 119670393 ppk Phosphorus Polyphosphate synthesis NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6150.8695 7241.9964 4515.8988 4951.0677 2858.8576 2858.8576 4023.8854 2766.0004 2535.529 6221.3266 9868.2168 6896.2544 4857.3904 2102.7963 162282261 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7645.3706 20183.7828 4732.4548 4763.1522 4895.0973 48155.5036 9457.3967 16892.7283 10111.8075 5401.6158 7500.8895 4124.372 4569.9067 4569.9067 7268.1579 11908.7769 3567.6029 4613.2057 159367.8624 5503.0204 2812.4124 9385.6454 7276.8377 2906.2855 3839.5425 15226.8344 6318.2227 3078.4006 3780.1424 4423.4654 41626.3553 4966.0327 332365745 pula Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK1059 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 4372.3418 15749.3286 11185.6599 3039.4448 4858.9058 187403.148 5896.3417 3260.9597 3260.9597 5934.6311 4084.5796 6094.4477 7305.7005 1707.874 2503.4733 3499.0202 4489.8159 298261301 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 6779.896 6635.1511 5835.4748 8325.3752 5427.8426 4395.7386 2942.5777 4479.7528 9497.3983 2618.1653 147495.8784 5983.7795 8494.9132 7071.2698 2757.513 2757.513 5775.3134 15607.5332 7763.482 10012.7596 12764.4386 11151.9716 6191.955 4391.9051 11636.028 14130.6022 26272.3735 9759.59 12367.6741 6824.7507 6956.1856 5809.3539 6743.4499 9750.6478 326423835 cysJ Sulfur Reduction NA Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 120059.0486 270814.676 173282.2314 142813.2522 45313.0938 229617.278 46331.2699 128264.4832 115732.8999 146832.5944 109822.781 5422729.9211 180748.9072 120105.6117 88368.0303 79155.4771 79155.4771 53551.5052 408154.315 58848.6357 87842.2945 121019.0358 38360.5073 46888.2331 70093.0166 81199.2173 99370.9904 259810.1253 111579.7307 191784.2347 31506.3313 65255.9099 79924.5446 108378.8584 69658.4763 166065001 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20702.2904 9446.0667 8346.1422 12105.8817 7411.2314 8277.4558 8956.805 8787.1375 10470.21 7516.542 229725.0558 18069.6881 9384.3455 10606.72 10935.4932 10935.4932 10647.5156 18184.5104 12223.2131 13009.7684 16683.8068 17122.1884 8682.7967 5545.6495 15468.6231 6898.1819 24820.3998 14989.8928 14708.5409 6320.9282 8502.9675 7675.7023 7637.9657 18247.6722 380774933 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 11423.3834 38326.1839 3486.0775 17162.8883 5069.1455 7509.0736 8919.9245 72951.5031 3688.5592 3343.8987 14892.6347 8978.7167 8978.7167 3202.7971 9044.9247 18523.2174 10661.8064 5828.05 6691.1936 7649.6983 5363.2702 2976.55 45315.6522 4108.9997 10883.5332 2882.0687 12444.1769 6577.4081 4087.1189 315178645 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 66889.8679 31576.169 29034.1423 9729.3931 10977.4406 5413.0265 388822.6161 17440.3711 8204.9801 16180.2228 21430.6523 8642.3105 206938.34 16161.782 119170.4932 18966.4785 14884.2257 14884.2257 11279.5774 28259.4408 13559.8135 17915.1786 20274.8087 18674.2124 18171.6881 10172.8396 20699.3693 21714.7997 48670.2684 20818.349 23424.7396 11248.2971 13258.332 13560.9721 11161.3432 21269.0292 3821797 exochitinase Carbon Cycling Carbon degradation Chitin Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9136.4792 8060.19 5567.5717 10581.6187 5185.6564 5726.949 2707.9077 7597.367 5528.8646 3627.3475 79507.2996 8403.8883 5129.7405 3019.9164 3019.9164 9918.44185 9643.9725 6514.5105 11491.8265 8823.8521 3873.7851 3368.72055 16289.3437 5193.4598 6011.5917 8098.62875 4465.5798 4894.5264 6226.1004 4050.032 10800.6815 385681955 glucoamylase Carbon Cycling Carbon degradation Starch Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 6414.3033 5192.9744 11901.2703 7203.494 4401.6202 3317.8023 6158.2037 7540.9368 3694.7103 129076.3597 7933.0281 10594.6695 3245.4514 3245.4514 4895.0281 11241.5881 8579.0271 5711.6742 7600.2494 9083.3841 3023.14 3621.7864 8655.1818 4675.068 15526.8804 5683.5941 9978.6882 3788.991 5230.0529 5959.2574 3849.1661 10739.969 37222160 beta_agarase Carbon Cycling Carbon degradation Agar uncultured bacterium superkingdom:Bacteria; 7818.8615 11106.369 13750.7349 17580.3664 11052.7666 8517.9652 15999.2531 30929.5944 15069.7824 258756.4817 6006.8062 20305.1221 11771.9799 9916.1648 9916.1648 8749.6213 26091.4363 13986.8105 12703.0834 145679.1255 68288.6589 10415.4911 8853.1354 18007.3013 9564.453 24645.8781 14975.5424 21901.5366 12773.0607 11224.0995 19304.2911 8503.4749 15956.1441 271966336 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 98490.5378 27905.719 383053.6432 127047.208 73918.1008 23538.3099 143379.6293 118495.2957 79823.6928 132805.452 140482.6231 141663.2015 2657653.1515 88405.8584 102208.6781 248440.34 138102.8724 138102.8724 57799.3507 192847.6287 109961.5886 150361.466 204967.6361 173284.4904 141736.9934 90046.7815 100379.5607 134697.8148 335929.194 121030.0863 115891.7254 75688.2804 127352.5078 190074.2636 73143.1306 223880.4433 302540196 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 22674.1033 27394.7906 8619.819 21771.9857 6507.2325 12889.3196 62677.8849 6389.014 17753.3455 35069.2687 7358.7352 287915.4792 20674.9601 17083.3697 71519.1168 15546.0637 15546.0637 12223.6382 31705.9349 18222.855 14172.6027 84940.3556 21300.2909 26121.5755 9507.6078 17454.7372 17601.9272 49376.0287 15684.3855 22169.2645 33868.5773 53670.2547 22045.1857 18853.412 74902.0722 307770999 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 24792.12 5539.0192 2614.3443 3551.0175 19305.7359 6874.5655 74794.0011 5999.2668 6661.4983 3384.9849 3384.9849 3419.6852 8206.7227 8102.1955 4289.9276 3573.4929 3991.1269 3442.0314 7285.6228 4181.3543 11954.4016 6360.4407 5329.5503 3987.0566 4309.3436 3628.802 2883.7953 4305.896 223029707 hsp90_Stramenopiles Other Phylogenetic NA Glossomastix chrysoplasta superkingdom:Eukaryota;phylum:Pinguiophyceae;order:Pinguiochrysidales;family:Pinguiochrysidaceae;genus:Glossomastix; 4507.7559 15124.804 8289.3808 3080.8428 4474.5388 5306.7267 4234.3146 2935.9365 62810.8195 3919.1078 6115.0496 4257.9843 4257.9843 19917.9136 10595.9079 5241.2154 7693.2758 5580.2877 7908.006 2989.061 9587.4787 9216.9811 5329.2555 2252.008 3001.569 4559.3911 2761024 amyA Carbon Cycling Carbon degradation Starch Brevibacterium helvolum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 4885.6096 7289.0981 3496.2443 7052.2382 5951.5683 6659.3556 2202.0263 8226.8323 4339.9907 5563.45 2811.8006 3367.7638 4048.0504 2854.7649 5107.29 146307643 chnb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 49654.8052 80193.482 84646.7262 15424.4839 14175.6006 3980.2936 9031.9018 15216.5552 29347.843 96510.5871 7632.5135 16647.8286 12338.5024 32526.5101 32526.5101 20855.0869 209515.3823 56232.6084 19401.8518 44300.3073 22461.7563 35249.9688 9208.3156 14294.9439 12873.9789 29865.6429 17890.7207 228951.3778 50662.5093 24605.3668 48027.1554 8775.8706 20909.8314 86136892 linb Organic Remediation Pesticides related compound NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 39803.4307 7446.3048 1524819.1814 3003.8258 7532.1746 2616.5103 8927.2426 10810.3879 11138.7628 137952.7933 35934.1218 20199.2849 111183.7909 5097.6491 5097.6491 26554.9139 33564.3718 11744.8084 5250.1998 9713.3357 45123.1939 6922.0537 10981.9684 25675.3879 13443.873 28682.611 29855.4343 12327.5708 5641.8336 9594.3601 98338.2874 11301.0921 15328.029 295441295 vgb Virulence Antibiotic resistance Degradation Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4631.8442 3455.3874 5388.5684 4643.1091 3789.7182 5222.4909 3417.1086 4337.8734 5046.6109 1557.1812 5077.147 2160.5988 119954372 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8759.3221 23578.6509 126643.09206667 53345.0537 227102.8038 21828.40365 4501.4455 10108.77445 18086.164 9966.48565 442372.8412 21306.02805 28161.44665 48273.57965 27906.2753 27906.2753 7653.1603 26660.1081 19528.31455 21911.5756 9569.34665 4411.70175 14084.97935 52452.47135 11429.14485 42183.28236667 40923.4761 49374.1107 12211.9187 21231.23015 14457.2539 19945.2336 6376.64075 219113439 EF1a_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 5796.7726 3208.209 2627.0269 11633.9675 11633.9675 3178.1697 3974.3689 4802.5364 9228.2011 129279082 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 46650.1786 19901.4458 2428.6232 11433.9498 3806.2984 7548.6878 81412.7794 10909.7657 4209.3019 5535.9909 5535.9909 7466.6616 3600.3961 21949.2984 6072.3562 6037.1539 11192.1338 825488.1305 6268.1189 4885.1222 3172.8497 5055.4843 3919.539 325536980 cmci Organic Remediation Aromatics Other aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 13881.1567 8385.5853 29291.6026 57753.8494 4862.5693 31095.0936 10881.4573 6301.2003 13234.6099 12276.4239 15122.1232 4163564.2693 9576.5121 18506.3572 13816.6822 15437.3602 15437.3602 8959.6705 22406.0394 19110.5167 17242.3572 24704.3724 11433.446 8570.7423 9278.0194 15986.4073 8062.5039 33994.7672 21315.9439 22788.5443 23404.5738 13758.5672 190650.4631 17830.5492 18954.2057 330688049 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 9446.3776 4110.9632 11814.0601 10484.1384 7487.0009 11643.2898 6395.8409 6779.7843 3131.5876 112371.9473 6079.7978 7772.0114 4224.5301 5681.458 5681.458 5734.3347 13117.1821 9583.2699 8363.9286 6397.9565 7358.4631 3166.683 4692.337 11364.2026 24680.297 18108.7961 8627.9292 9928.9872 4945.4869 5631.0885 4953.0091 3378.1355 13624.6454 212633497 nrfa Nitrogen Dissimilatory N reduction NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 15516.0007 20316.0471 25266.3539 12006.9916 9262.2426 158269.4347 9170.3883 8265.5348 16698.3058 10739.5252 126382.13 7805.7784 24451.1038 10482.4644 8331.6386 8331.6386 9688.0697 21793.1372 11912.0995 12651.1645 12924.5188 20286.2898 7308.7461 7810.4795 11953.7718 15709.6563 27292.9656 16748.2786 13299.7069 7816.6149 11447.8244 16802.8022 13169.6291 19866.6284 260223127 gdh Nitrogen Ammonification NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 9073.8886 12856.7247 6462.1161 5948.7917 45825.1223 6244.3129 12729.6828 16975.2508 6163.8546 168958.013 16976.0325 11056.5219 13542.2711 9030.6759 9030.6759 9691.8764 24429.2824 11673.8139 9192.9179 15318.6074 8295.5488 5572.5787 8295.5086 20009.8329 8492.5075 26392.9335 31060.64 18065.1579 15588.8715 8961.534 19661.079 18244.6635 43244.7844 365419961 xyla Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3858.1235 4128.4787 4032.4684 4447.108 5633.4487 2901.0071 1965.9753 209897542 ppx Phosphorus Polyphosphate degradation NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5098.4552 10920.628 43440.8376 27247.1882 22572.3437 9960.26 8434.9788 14477.9406 5568.4792 207990.8947 8763.3869 10687.5851 26168.2613 17118.8942 17118.8942 6924.9829 21316.9893 14906.9663 6615.5322 15148.0059 3881.9072 5838.8298 32533.2977 5421.0572 22913.109 17603.5445 25565.8627 9361.2212 9029.3939 13600.6395 4645.7944 302406080 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 9243.7436 12462.9641 5220.9086 3847.6107 2572.8964 11145.583 4611.7267 5218.5219 19313.5305 3441.1079 4837.3959 14468.5465 9387.7161 6317.7728 3197.8211 3048.4616 9349.398 307636387 chitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9932.022 9291.8375 21722.6921 10582.9471 2168.8716 2980.8606 6452.1766 9737.1253 3774.6556 127453.0241 6774.2096 4348.7815 9395.7749 4686.2228 4686.2228 3810.5616 7377.8865 4862.5126 6565.3242 6114.5207 4133.6346 7133.9418 9078.0926 7055.0595 9180.0583 3178.885 2983.0762 4146.4305 118170486 nirb Nitrogen Assimilatory N reduction NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 21852.522 9688.8257 9143.81 19978.6851 6356.0446 80012.8221 28869.1413 175350.6937 13243.2539 13592.8064 22949.1947 223983.2198 37793.9072 17572.6326 35980.0505 12447.0324 12447.0324 6800.1528 37522.3402 19198.5309 25875.6048 31555.9638 19804.5144 12697.7507 10251.4233 25064.9019 33934.098 61949.3476 26125.8564 25023.9277 8799.2455 14064.8581 13722.2928 20790.0274 17296.6166 124515171 amyA Carbon Cycling Carbon degradation Starch Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 205934.4033 737882.748 499493.1814 231526.2048 129565.9525 23947.2559 19825.4849 62075.571 17770.7285 19703.6671 97611.4901 34469.1113 653430.4181 313387.491 44314.9309 48221.7184 85011.9605 85011.9605 22984.0934 37940.541 28816.9579 37367.2316 32014.4332 45155.9572 42651.8339 31059.0742 66109.5562 42486.9113 223922.6669 76229.2242 201676.8494 33739.1744 29767.1129 47071.868 20256.476 87578.9487 284037765 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 4479.9004 6240.1567 15677.5465 3322.4552 4397.4436 7069.7074 3995.4831 6031.796 7911.3426 63701.8753 3609.8692 41494.9078 11856.3141 190682.0595 190682.0595 4246.8769 9550.997 6876.6533 5410.415 5742.8746 2894.6936 6402.6316 4892.1013 16239.7101 13222.2866 17624.9531 11165.6259 12188.8604 5801.0478 6061.2754 7556.4991 4230.2554 380774146 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 26837.7509 5767.7111 17360.112 66840.5401 19974.8796 7938.5705 6067.3373 32530.4127 3851.178 116106.0763 8719.8621 14848.3578 11953.817 6963.5341 6963.5341 3710.8934 10788.6041 9450.818 10668.0137 19413.4164 117597.861 15009.4176 5688.6317 7116.3741 47162.7894 15999.0658 4250.9431 10121.3773 3855.4696 8781.9328 9365.0234 2906.2981 10244.3425 117188449 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 21015.3939 16004.7962 13386.5697 14205.4647 16766.2231 16293.4288 10867.3497 29379.6635 25750.7487 18785.2443 390623.3681 26279.1782 20028.9501 65469.3541 20304.5945 20304.5945 14699.4934 56511.2051 18738.9171 19272.7627 31556.1686 37098.6825 18028.6405 15766.3371 51890.9892 32255.214 54299.9204 13670.927 26514.0617 14541.9708 43499.9147 22086.996 13251.1 475844.9028 25990810 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7955.8974 48552.1898 6993.9153 4155.9454 74890.3873 36085.8721 9600.3134 3550.9746 3550.9746 2917.5418 4612.3056 4286.1079 17724.6424 403120729 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 14335.4524 5956.1997 18611.0148 63059.7643 9121.9835 11150.8569 12714.5375 12825.6272 101102.6828 19415.0492 16096.5866 323350.7069 20017.5462 19685.3883 34552.2677 11679.851 11679.851 8098.1576 23244.1166 16025.7587 9382.0434 15319.9806 16195.8176 9049.291 10310.9834 22506.1741 10794.7493 31898.1845 28789.8542 21353.345 10080.0117 11101.8432 22069.7321 8312.951 25327.9665 219664365 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4234.4895 2280.4772 3397.728 9760.1943 4842.6795 5268.1644 4435.4298 3587.5332 7640.8715 6328.154 8682.399 4884.0167 3080.2059 3211.9355 8054.1873 2578.8974 9201.7466 7522.3313 10441.2477 3612.4171 4230.9606 3534.2555 6290.3308 60476048 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5984.4599 4473.1272 4190.0841 2471.542 5786.9869 7782.4138 2615.0965 128922.8577 7343.147 3711.6666 2147.4362 2147.4362 4623.8523 10306.8986 7971.8956 7716.7458 7773.6719 7103.5499 3919.0552 4170.2651 9382.2499 2906.6148 13968.3754 5355.5214 8943.9414 3660.8962 5860.993 4645.1274 3502.7731 8184.2902 83404790 nirs Nitrogen Denitrification NA uncultured organism 9163.1781 5737.0317 7808.7231 15023.8563 4001.7686 6052.1391 3012.4196 11211.9261 12298.4002 6854.2669 163851.4996 6306.977 6827.9292 5040.5016 5126.0928 5126.0928 5726.7529 13375.2661 8480.9211 5896.6972 22036.0056 8252.9568 6060.6614 4310.1629 14406.5673 5525.8954 16033.6486 8390.7897 11199.8951 6112.9944 6313.9313 8829.171 3919.5212 12424.3436 238836756 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium sp. TN19 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 272497.5752 16805.6274 32697.778 19681.8791 349552.2454 9370.7531 44376.5878 23633.6461 28182.033 33092.2567 38546.2552 20311.7759 1299718.6497 172242.695 42158.4813 36410.906 30705.7421 30705.7421 20125.6387 55993.1542 28341.7094 44183.6353 36437.1505 254691.0946 101546.7092 27054.8675 36192.0753 21118.2594 721697.4188 201259.9483 43593.3383 21803.9157 34115.7911 50381.0169 23604.0485 54031.9785 325947942 vana Carbon Cycling Carbon degradation Vanillin/Lignin Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 7230.912 8147.0578 51592.0773 2649.3315 4685.0131 21408.9417 6505.2909 94684.6258 2189.488 2189.488 3523.6999 10151.5034 25384.0343 10564.9626 5381.6843 4130.3611 3346.626 3681.502 8506.185 6980.1185 14300.6991 3656.4555 5717.4131 10572.1725 5058.976 311742895 gdh Nitrogen Ammonification NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 5781.0748 328922826 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5954.5966 310959.2531 25520.5628 10256.6394 3228.9371 392093.0568 6092.342 5322.2123 33677.9034 174628.3346 6752.5701 7229.158 17077.7578 24750.5959 24750.5959 5424.6373 7967.6835 5735.3606 19557.6007 3048.9059 10800.8829 6297.0291 8398.1857 16081.223 15711.5523 7486.3349 6955.119 11473.1719 4329.0912 2171.8783 8054.4637 302688435 rgh Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 11099.5462 14433.186 9200.3895 1912.5707 4663.79503333 2101.006 24227.82215 6529.66466667 54583.7176 9261.5965 7091.84583333 5033.13195 8598.5006 8598.5006 3408.9272 15110.32395 7067.32905 3862.7909 40222.81643333 7241.7933 2937.5639 7817.156 8798.4386 5055.57466667 15948.6481 6802.815 7784.14015 4478.1907 7227.76275 6296.03835 4792.0254 6870.84226667 170027493 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 249448.1244 19723.8706 106038.3692 848254.0441 27762.1101 32719.769 40129.8104 124394.5896 117918.5399 98073.1269 358545.4739 121121.3942 1489625.7243 687185.9139 237723.7704 318258.7259 185464.7914 185464.7914 115142.1526 188544.2642 142763.2591 320536.3866 232055.5506 96644.3566 93327.9085 94623.1701 91120.572 102400.0942 284563.3954 124191.8656 244453.0869 51205.6927 79735.2763 126700.4645 96070.6587 278391.776 116291829 cda Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9623.5712 6830.1344 11706.4531 9908.4479 9140.4285 8300.8457 5190.5546 14352.3709 12906.9595 16544.961 248810.6704 11895.5356 14403.9799 15710.8143 8152.4097 8152.4097 7743.5765 18554.0353 17072.3395 11842.4759 12657.0048 14562.248 8202.4703 11409.0408 16735.0918 14701.4663 24354.8516 9804.9478 18373.8653 11042.1068 12354.8613 12944.355 12086.5937 10212.4188 212661519 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 9014.2844 7825.7723 40476.9064 4654.769 7690.1647 5735.2302 6717.5403 11277.0134 6262.9951 5130.7188 888579.5191 17839.9288 7349.8024 8177.7843 4126.3772 4126.3772 4785.3948 14225.452 8104.3541 12518.8863 15983.6613 28740.616 5458.2928 3622.5431 9868.2852 5149.5583 20411.883 11587.7276 11877.8294 5558.5891 7738.8353 8615.4593 6102.7153 14690.8942 296922693 gdh Nitrogen Ammonification NA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 22336.7255 9521.1998 33107.7937 176835.1556 5407.3871 5941.5269 6788.8012 11268.4813 212578.5677 4797.5415 15641.7027 17136.2372 4989.0558 4989.0558 3671.8977 10594.2003 8011.6862 3771.4995 8228.4425 13388.1483 6439.6442 4827.79 13092.3767 7757.6301 24952.6317 8738.7138 8515.5441 5052.4428 9046.529 11615.6264 5107.8135 16506.8919 119353305 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 87531.4543 43501.3084 7019.098 18393.3391 6705.4182 5149.8289 11872.7737 8185.1213 18623.8795 19505.775 11942.6527 873754.4432 21923.9766 52230.3502 16470.3926 11560.6466 11560.6466 14288.0569 44908.0083 22565.0038 43434.2882 311117.4575 45008.7494 20352.8768 12550.3251 30094.3417 9563.6522 54776.626 34475.0487 27112.3639 10428.264 43497.6478 18040.5029 15760.9563 26368.8318 56479167 ppk Phosphorus Polyphosphate synthesis NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 6863.6438 6772.5198 9477.8897 28985.6023 7561.2172 8227.6233 5692.051 2838.3433 6228.4802 11064.3908 11608.3297 245661.1366 171701.8358 10645.6372 19587.6482 22303.7272 22303.7272 4148.9588 10231.9859 7872.4788 10103.4847 7996.7984 3520.5353 6051.3844 13616.6521 6416.0298 15510.5439 6586.9985 13137.5544 7189.2418 6316.7664 6078.1877 4361.3513 19183.8839 2828271 alginase Carbon Cycling Carbon degradation Alginate Azotobacter chroococcum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 6781.8032 234138.1387 11989.8322 27974.5245 20747.2953 5453.547 59120.2454 6730.7956 14645.861 90183.1639 66785.2575 99219.3808 16766.6882 8121.2505 8121.2505 4082.2543 21793.5222 6339.9216 4601.5311 22774.3576 6051.5413 5989.5082 12143.5589 17595.6981 41978.3216 9660.4645 9629.4705 5560.1049 11011.1549 7429.379 26942.6022 11699.2651 374814611 bphF1 Organic Remediation Aromatics Polycyclic aromatics Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 7498.3285 4361.5675 5022.0186 3629.1924 3899.7662 5069.9148 8596.4793 2707.7725 106789.2208 7659.8868 6495.0483 2562.7498 2562.7498 5008.691 10413.133 8687.1803 8285.4596 9567.8488 5119.0954 4012.0901 3577.7863 7647.1064 5384.186 10738.7361 5995.0586 11245.2868 3225.4939 4956.3873 5823.8487 3283.7744 7838.0373 344036343 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 118723.2834 28236.5619 71242.9421 52701.7963 1069423.456 124278.0121 70747.8563 213500.1886 141201.2185 41836.1169 45603.7619 52986.5275 841008.7223 133581.8579 62187.9897 70721.9427 61351.4282 61351.4282 34391.1617 59776.0293 269457.0496 107305.4333 200184.2553 106837.5283 47440.938 37727.0542 70325.7641 104149.6332 125416.9437 101485.8789 75414.7637 26622.8172 53735.2376 73232.2747 92161.2509 72568.6416 157086340 endoglucanase Carbon Cycling Carbon degradation Cellulose Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8099.1582 9044.5785 7084.2706 4501.9178 9475.3246 21235.1686 5395.1406 5320.5255 4520.5682 5616.1014 3766.683 11076.1022 3967.9284 3967.9284 2849.3082 9237.354 6396.8006 3774.7634 5594.8087 5340.0302 3359.6249 9187.2211 11588.161 29064.9907 15657.443 8974.4754 3025.282 5785.1119 9003.5844 8575.1135 288910086 cysI Sulfur Other NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 4906.1196 12248.0189 16242.9155 10900.8583 3740.5138 9065.2331 6859.1185 12421.2606 5299.2749 13205.6588 7308.5831 12621.2848 12621.2848 8033.2946 77044.3437 34043.6318 6221.7411 12230.6884 3927.5002 4530.29 6337.2444 20289.6196 7481.9484 33744.7819 6996.9072 18707.0521 8076.0538 7402.9504 10010.9785 10850.9119 5513.6733 220718747 oxdb Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 65798.688 82391.1166 1733667.8814 101573.3827 54316.8176 51168.912 88298.0618 61702.1962 31080.128 80190.8079 39262.6788 841500.0366 71313.9586 46366.0601 315002.2457 45947.0446 45947.0446 35138.0367 77043.2913 95984.5137 81007.5289 73871.579 72409.4313 45981.6105 36078.9216 96295.8341 51846.048 185958.3911 65920.143 67706.5628 49082.4745 61632.8893 59697.8074 33844.4481 94004.7429 302483123 cda Carbon Cycling Carbon degradation Starch Prevotella disiens FB035-09AN superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella disiens; 4046.3868 4800.5992 8541.4807 3620.9837 2443.0145 2837.1135 4937.9828 62211.9224 3997.7876 3641.3452 7590.5517 3697.9726 6773.6388 5441.8589 2767.7791 2593.2579 2981.4497 3396.2996 150036122 soxY Sulfur Sulfur Oxidation NA Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 19166.3267 10438.5767 21527.3675 6561.2409 26693.4868 14157.1216 12587.5175 9911.9794 25262.9 22575.6942 216375.3269 29330.2273 19914.6475 12994.0823 14383.2452 14383.2452 7305.9792 34452.5654 11279.3753 22135.4296 12803.0295 11138.6081 4885.6279 10563.3659 15976.3391 8039.0005 35379.0755 13678.6243 16171.7708 13062.2053 9934.713 12091.4459 6960.7947 15513.7489 225194091 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 82246.0889 2604.6952 2604.6952 13004.9753 2115.2557 2866.6427 2728.49 302689067 pme_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 86519.3032 21669.7196 34345.446 48228.7992 17578.376 37104.5082 60349.2665 55752.6406 68446.7332 67575.8308 54826.0681 1146784.1539 60505.197 46099.6871 47500.7541 64693.7847 64693.7847 20749.7728 111157.169 34116.3081 106710.8636 54568.609 44355.3809 50999.2242 54866.1147 65591.0392 55367.2733 145341.7145 74426.6365 52142.329 25938.6964 77247.3762 64549.6319 46954.526 51053.9901 357022852 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 60389.4735 9523.0052 74279.5297 11023.797 7794.3845 21427.8015 11175.4939 301529.0628 24027.9272 20202.2952 15988.9339 390190.7329 22749.1178 34483.3266 28057.5175 18194.3104 18194.3104 14938.3043 37912.5142 17906.5684 30921.8418 22771.2292 14564.1945 13756.4869 17378.5218 31992.295 17167.9633 62918.2476 16404.9115 26213.2339 10817.6593 22509.1855 19148.9832 16022.7792 25475.0666 164455598 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 18413.2358 7240.7829 13291.4265 19391.09 7480.0639 6033.9142 6710.2992 10041.6431 13062.17 6342.9699 285150.2401 13272.5095 11357.7409 10412.726 6069.5735 6069.5735 11254.2489 16125.7681 15310.685 12680.4167 15693.851 23722.5475 6804.7836 8419.2744 18781.5815 5171.0268 32017.69 14300.9993 18840.8882 5762.8239 9453.0773 10267.9106 18577.2922 22397.6438 225376385 amyA Carbon Cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 75396.9171 18410.3646 8190.8343 9686.4306 4385.9067 133489.8466 6984.659 16718.2112 7503.1148 6053.018 6053.018 4475.8818 12595.1266 6839.7 7778.0754 35951.9109 7559.5269 4942.4297 6132.1788 9882.7597 16100.5354 12612.2462 6505.8894 7726.8808 4812.7543 5868.0451 5039.4811 8097.6351 7434.4316 209486872 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 123854.3394 14231.7115 2567.6111 3443.7255 3250.5618 30072.9023 14702.461 5199.3808 8017.144 16532.3039 5189.5951 5189.5951 12611.5617 5469.549 4263.9874 4767.1862 9396.7741 6804.7153 6733.6667 14342.2895 7633.9019 8645.9652 3131.3507 6091.5956 10984.9774 13758.4896 295429836 pme Carbon Cycling Carbon degradation Pectin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 26927.6068 81602.4876 20841.9004 5750.3736 66770.2233 4881.3721 33443.1384 15868.8941 23639.889 480655.5931 18190.795 15927.6447 26325.5933 31752.056 31752.056 17259.8069 27402.0097 10594.4765 36391.8345 27643.8157 25658.5821 16568.5242 18523.4848 21653.6395 32518.6513 43455.1879 29302.5586 31721.2624 15476.4093 11044.2555 16478.7633 4747.1063 15306.1351 115377085 ppk Phosphorus Polyphosphate synthesis NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4926.0806 5332.5493 7182.5011 9250.4426 2491.9241 3783.8923 2419.903 6323.4386 9094.0533 135374.6399 8757.2177 12458.6945 3438.4235 3438.4235 5052.7292 10623.9569 7006.2238 5857.5752 9106.8447 6191.7916 2914.856 3877.8682 10949.48 3306.3666 11901.4074 12185.9827 8334.0442 3687.9166 6078.4235 4402.6714 3066.7656 15092.3405 18149134 nhh Organic Remediation Aromatics Nitoaromatics uncultured bacterium superkingdom:Bacteria; 11683.9595 58974.3281 61142.7502 8540.012 7583.8701 7954.0908 4927.3849 12398.8088 7670.5138 12852.0042 10545.8566 144864.5186 19919.2585 36867.8264 12716.1743 10586.3966 10586.3966 15346.5726 18109.5262 6672.5625 25821.2896 55433.1984 7353.9457 3876.1613 13965.0211 12649.0361 23270.0374 28077.822 18552.4133 38168.587 19874.0772 20700.8335 13112.6589 12064.6433 302696017 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7537.5935 8561.8706 8213.6001 21018.49035 5791.76555 4817.4519 4385.7824 4251.4614 12320.9712 6088.8856 11804.5144 9521.2242 24820.8697 6275.2365 16291.1531 10514.3992 8637.2494 16009.3398 12177.7536 3635.7939 4445.42055 13680.3838 4609.9186 24879.2437 6330.8183 7566.715 5855.4764 5008.8198 10356.3844 623540 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 35504.1681 7510.022 5081.5361 10485.7524 5188.0613 7660.1716 6538.3821 4374.4575 15003.9899 23665.819 13130.509 195966.277 11776.3327 29832.9962 14861.2809 9998.9807 9998.9807 11437.1121 24459.2218 12835.6182 72699.1347 27253.4779 25742.3134 11261.4267 10668.8142 17833.6948 8970.8009 32307.7467 9825.5999 17699.655 6361.6315 14334.6755 22934.3253 9183.0027 18909.4756 329956818 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 50958.4132 98727.9681 11743.8057 72822.8612 7792.5415 16014.8709 20307.7774 17015.4865 48086.6275 23697.5179 35543.5013 283129.1894 31860.9564 23276.6127 29912.6047 29502.9672 29502.9672 15197.0997 34851.4941 19864.9859 29174.9121 37505.8115 21180.3856 56830.9354 24203.1568 40331.9278 19288.8045 48892.392 41180.0823 33530.3192 80136.3534 27677.8334 21885.6983 13523.0115 32186.4927 260433200 PRI Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 4294.1203 8469.0671 29566.8139 12217.1455 3584.4901 7800.8374 2894.9981 4550.7175 6463.5863 3212.3708 141388.7647 6375.63 7355.0401 7398.0914 4978.7921 4978.7921 7035.1409 10058.1444 10740.546 10063.8098 4339.1854 7011.0221 7982.7316 5727.9318 18542.6241 5203.2123 20007.2784 17013.6425 17418.713 7840.5797 8061.6584 4326.7383 4939.4686 5548.0317 333481981 narg Nitrogen Denitrification NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 9359.2114 468228.3405 7524.8079 196667.4371 2816.5301 2816.5301 2746.1038 5397.3294 6270.3311 3578.0615 5177.1582 5260.7574 5505.3897 2105.5241 90104852 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 42510.0675 6060.9124 927653 chitinase Carbon Cycling Carbon degradation Chitin Kurthia zopfii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Kurthia; 7814.458 6567.7155 5256.0989 8594.5244 4742.1386 4413.8486 4922.5676 9488.1896 4673.7468 156397.8225 9925.887 9156.0747 4385.4252 4104.9665 4104.9665 5790.65085 16075.26235 8623.6705 7246.0574 14049.6118 5374.2672 5427.398 4030.4747 8861.9679 4864.7996 14808.28225 8252.1231 19165.90735 4403.67485 6257.3792 5110.8508 6216.8809 6848.01995 60476036 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 29979.3948 2458.2072 2590.0379 4260.4061 2517.6094 93060.1999 4558.53 4305.9342 5133.2527 10823.9297 6981.7525 229911.2742 5220.9112 8304.7863 3634.4393 3187.5443 13650.25 2524.8455 11822.1574 7139.6014 12332.2582 2737.3492 4223.0891 6475.4074 2804.7393 7293.2969 39650578 urec Nitrogen Ammonification NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 209490.9994 757348.7188 95273.6975 233217.9223 64555.5994 15807.5063 127417.7042 148597.5972 69896.8906 176149.9896 301354.8124 180984.6859 1589124.2472 144327.5882 245280.2924 184398.5356 179269.4122 179269.4122 148287.3741 257653.9173 117874.4513 72390.3121 175685.2809 83522.6814 70830.2311 91512.2686 121928.455 154948.1929 350443.4647 131108.8571 154275.5552 192224.7262 158382.6438 126569.1546 109597.4575 209296.8692 221169566 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 12109.7028 10190.8971 15744.1796 20899.3649 7061.0413 5574.9386 8356.0518 15145.6051 6886.6219 7996.616 7833.5078 147276.5658 7524.1521 18123.4356 9922.6817 28911.9708 28911.9708 4966.2548 15593.8248 13012.8099 6957.9816 11137.3402 7872.1803 6127.7568 11962.1828 27337.9112 6599.3078 22872.7201 14455.0051 18104.7644 43400.7127 16179.9374 10727.3254 14526.5781 7564.7033 238059513 endoglucanase Carbon Cycling Carbon degradation Cellulose Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 31032.7643 22970.129 21580.7229 74059.697 15088.1985 56353.8084 26151.3969 6857.2548 21214.9004 13495.0627 13536.4894 467127.1803 16397.0931 17764.236 16246.3551 12720.3405 12720.3405 11005.473 22463.0832 17700.6638 13990.502 26365.4571 40735.7785 8453.1896 10942.3376 27694.9505 104749.9283 37802.5084 23327.3764 29240.1415 85792.9058 13287.9017 13102.2068 8950.6066 14634.1632 119879899 cellobiase Carbon Cycling Carbon degradation Cellulose Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 12451.4761 6583.3406 6494.9266 17993.0742 7284.26 5947.3866 6585.9989 8131.257 9995.5385 10987.6221 640751.6458 9249.5816 7861.245 59306.0317 8784.0039 8784.0039 3309.4187 14050.1759 4723.9432 17057.91 45670.3877 24528.5157 5870.069 5170.5532 13337.3255 11846.9226 28395.9727 10160.8642 11185.4688 8451.4683 8217.0091 9265.128 4409.5457 6399.5319 328846666 B_lactamase_A Virulence Antibiotic resistance Degradation Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 474168.5888 9676.3186 39296.2325 15519.7752 6077.1945 5965.3852 8985.3931 4393.6919 8142.4961 8684.2928 155519.3934 9284.6292 15632.4077 16523.9182 6135.6319 6135.6319 5346.759 16504.499 11914.7007 4916.8847 20743.7247 5463.0378 2981.2566 5586.6714 17932.4872 4688.3904 19717.5925 10995.603 29485.4847 5853.3568 7651.7212 4265.7471 3784.1429 4965.0756 255919536 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 63999.2054 13520.7546 22292.7844 33632.6115 4432.5333 9855.0569 15754.9318 5291.7754 13694.4704 23184.3275 22779.9667 282117.0149 16508.7244 17717.1743 17819.9731 16124.3436 16124.3436 22503.1951 30439.177 16704.5987 26349.5225 24613.2705 16995.4099 15735.205 20005.953 27438.9151 18925.1683 53909.7516 24847.9037 35114.6976 11295.1667 19600.9935 33848.5419 14111.5163 34208.9978 315589607 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 8364.5134 6315.4636 14830.002 8641.098 7452.8034 4571.7561 5139.0485 5403.0262 10797.433 100857.6749 4280.5695 13889.1628 22611.0655 16886.2082 16886.2082 3308.198 21710.9295 8810.2104 11623.7521 4076.4591 2933.4529 13176.3645 20650.5343 6270.9031 18574.1794 10281.4002 31518.7778 6836.7895 31066.9624 11415.3227 4221.2299 16874.4164 55978130 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3991.3043 25020.0689 5485.0304 4214.1281 3082.3627 5905.9128 5394.3074 58489.8239 6211.4312 4992.1153 28921.6364 5160.3928 5160.3928 4059.0049 10871.7993 5661.7586 6186.6826 6202.9133 10004.7268 3352.0383 3218.7564 7540.7168 2441.9299 10140.608 4078.5273 7559.8254 3161.0086 3333.3004 4579.9626 3245.0426 6929.4808 319783963 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 6216.4304 28737.4778 12458.7801 3351.8729 10135.6147 6468.0297 32185.1143 3796.8939 120202.7895 4851.23 17148.2716 3271.5364 3271.5364 3234.6923 8444.2197 5245.3506 3800.1956 8723.0844 3990.0271 3472.3541 11369.8881 5505.8704 9598.1316 1825.2667 8635.9064 14819.9686 4017.9372 313894942 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 26754.8474 45213.7175 5385.4897 78460.0287 7680.7652 30065.9724 10841.2464 10436.195 28333.9727 125028.8846 38631.0729 12422.1826 49308.6232 13677.0061 13677.0061 65513.7589 23504.4439 44613.0008 12843.907 6850.7239 17027.6448 41906.0064 19568.8869 9962.4908 30719.4105 29857.0476 21969.7335 8627.4495 5964.4442 12660.7856 18583.3464 9124.1062 18673.3619 347589363 terc Metal Homeostasis Tellurium Detoxification Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 3920.492 2524.8433 3768.7794 3103.9643 3343.6989 74808.119 4897.067 1850.6191 1850.6191 3976.296 7376.6968 12638.7957 5002.4654 2803.3247 2342.5245 5851.5888 4167.7689 7447.8875 2864.4463 4404.2528 3042.3275 302385904 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 34668.354 24785.5758 35976.1289 30802.644 4448.6263 7965.8726 7683.4995 39675.9598 21768.1895 10300.2788 16103.3458 250778.056 15988.364 12124.0494 7703.2119 16705.3622 16705.3622 12389.3635 142644.9246 27681.697 23268.711 30116.5703 15318.5292 9012.7819 14456.8301 13917.3513 9981.7526 43630.5464 17968.9852 130963.5099 26457.3375 12888.8573 34407.6687 15328.1637 19848.5491 227329114 nrfa Nitrogen Dissimilatory N reduction NA Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 16446.9786 7399.2309 9402.8462 12092.4662 4941.1798 12535.2627 9990.0287 5845.4804 17912.095 29906.0579 18076.0614 188894.9463 20243.2205 36561.8257 9705.0498 10753.919 10753.919 8364.0143 28885.0766 50725.7277 10774.452 22487.1059 29740.249 6874.8791 7407.5832 18993.8938 11897.061 39427.0766 12601.8118 36618.1632 9516.4905 12049.236 13091.571 9270.0793 16742.206 359827819 rgl Carbon Cycling Carbon degradation Pectin Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 6066.8532 5898.5338 7250.7979 7736.383 5558.9379 4320.5505 8093.2476 6058.2278 3259.7914 166519.3632 7301.1015 6931.2142 6122.9966 6122.9966 5040.6956 10404.56 7120.6206 9980.0041 8190.6335 7937.4227 3828.8118 4015.0201 8540.8828 3904.2574 15513.6464 6304.5285 11266.0424 3050.0067 5379.8764 5782.2902 4364.2009 9721.8716 323365010 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 60134.9658 21174.2095 49602.5046 65715.4154 99187.4123 32732.6213 32115.1058 45396.0872 22497.3244 35067.4039 43444.8771 22641.5077 1294547.6149 56351.5515 51919.934 82643.1321 97673.3488 97673.3488 28641.0175 77247.0298 42460.8725 235344.3757 44996.9793 57174.6223 25730.1691 28983.6582 73816.0354 22074.6695 103654.571 54805.4706 84557.8036 24729.9953 35884.8227 29643.9195 22032.9185 54746.0414 374334931 arylest Organic Remediation Aromatics Other aromatics Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 10847.527 38746.209 19363.1839 26624.9255 3134.2072 11565.5001 6849.5306 12676.4053 3204.6498 121959.155 4758.0746 1999.8945 1999.8945 4379.3534 8318.4074 4964.8467 4077.6684 8930.43 2334.9635 3384.1601 85737.6347 10001.1201 3718.8416 6888.1739 2071.1278 6893.9814 5656.0999 2152.1666 10913.9015 121712495 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 15415.1354 8660.2698 4401.0933 11901.7993 5226.4533 12580.4712 243081.4404 7796.5198 9084.6479 17659.4987 5530.4305 5530.4305 3955.12 13010.6888 7804.9383 9205.7099 12257.4523 5666.8188 6922.1272 10466.4578 11094.177 8162.342 30591.8933 10958.89 13073.0416 2790.1658 25212.8181 15044.9142 3490.7962 124267977 pgk Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 32030.7582 4706.2862 10343.493 10962.4278 10607.2859 133543.0705 10835.7753 10159.5803 10272.6795 39995.2044 31171.0525 241750.3991 6060.5099 14413.7308 23314.1294 13306.8436 13306.8436 8656.0857 53874.4583 7686.7006 10075.8419 44805.841 4745.9513 7388.8483 17649.4446 19345.7572 30245.7922 41026.1894 26890.3102 27769.563 6280.8204 16922.6674 10433.5349 16306.2259 15015.9518 224371587 alkk Organic Remediation Others NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 5421.1335 3518.2398 3518.2398 9479.2045 2943.8364 8135.994 327311639 amyA Carbon Cycling Carbon degradation Starch Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 35741.4304 20495.4902 28787.8127 40230.6115 32382.0168 32057.0872 22370.2306 23022.5522 23182.0792 48111.3923 37908.7742 17228.993 944705.9617 47056.7592 38829.0455 27858.7258 17878.4052 17878.4052 27573.5083 50407.2416 31413.6108 113912.5676 41807.4784 57371.9285 18494.1922 17106.9239 43819.6873 13463.884 58809.0727 21021.7029 42509.2199 17045.3031 19540.1132 22526.6478 15590.3608 46541.3719 317131734 amyA Carbon Cycling Carbon degradation Starch Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 13866.6571 4127.565 9511.8042 3071.5571 71266.6998 24973.1988 3926.3128 5628.6662 14553.9986 10125.6381 4683.4901 3002.2435 9183.0145 315600199 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 22153.3342 74630.2049 26032.5567 26852.3994 110972.7519 195227.9889 10379.8897 11845.8121 12894.1276 26303.773 25511.5271 411900.3193 33054.9759 21570.6422 169889.7478 25243.1976 25243.1976 8354.6479 33402.634 42119.8739 30285.6289 29909.9457 22293.2809 22032.9623 31327.1738 587963.0494 33348.915 68776.724 46891.9037 41668.087 11122.0323 43419.9472 23586.0377 29456.9705 48134.1061 126728392 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 64145.1345 4729.3676 14720.2189 3574.924 101611.7656 5589.4061 7531.1464 8050.6098 120500.6639 12025.2129 9625.6855 9452.2063 18437.0255 18437.0255 178305.1558 18227.7674 9316.0063 51187.3427 7301.397 4717.8851 5908.2628 4237.3112 11769.5509 4222.4528 23291.1325 13244.6732 10955.1568 5831.2273 15174.3361 7021.5656 28928.5902 13980.2438 95109234 cysJ Sulfur Reduction NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 18739.9585 18032.2281 2412.5601 5829.4695 8506.6164 143368.4721 5648.5999 6348.213 3808.0642 2606.2598 5599.8653 5232.2231 6421.6475 1827.2165 371991071 ppx Phosphorus Polyphosphate degradation NA Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 3863.4646 3887.7441 4119.3674 4898.0643 3628.9084 6267.9327 4651.6018 2647.3106 2647.3106 2839.9888 7542.5719 4932.7852 5033.7136 2936.1532 3394.6213 6841.2613 3254.8784 15266.8647 4952.2093 2076.9574 2905.6277 2873.9571 6151.3106 302688289 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 16313.2139 5864.7166 10808.4873 7764.3696 6395.0526 123687.0684 5132.8679 8954.048 17203.3774 15160.0095 226424.165 41502.0112 11718.1156 13484.7122 14838.8866 14838.8866 13641.6364 22361.8819 16440.5106 19909.9025 18128.6946 11187.3259 7857.9369 10565.8597 12860.0487 16797.0668 40391.1113 29483.0666 17352.1927 13741.0626 21244.8343 17478.6621 10504.2912 17255.3466 380878026 fccab Sulfur Sulfide Oxidation NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 14676.5662 8719.0786 14535.0014 8100.1646 89624.2321 6208.4562 9596.0288 12016.8747 12325.2375 211148.0246 12800.3844 12213.6907 4554.1647 7891.6765 7891.6765 10521.6931 24252.1394 16501.8339 14592.9005 15182.3872 21097.7621 99449.5887 5868.0719 20612.8857 5490.9418 34765.9603 17004.4458 16108.91 5835.9945 8655.5926 10963.9364 6980.0058 16597.8639 345878422 SoxB Sulfur Sulfur Oxidation NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 278105.8807 23901.071 46709.2759 470780.4251 19858.8681 15636.8397 54523.4561 182891.2588 83379.4782 89938.8889 61806.8688 85798.317 816272.5894 54388.7677 100430.8888 102401.6652 219382.1814 219382.1814 60469.7611 140098.423 71698.1365 52883.5286 324329.1483 69240.2261 102200.7593 60668.0292 104412.928 243693.7044 359462.6783 104798.2234 100796.4191 60754.5901 77257.4418 108972.2805 72416.2623 270844.3714 688433 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 34508.6698 87981.5752 15390.5122 11759.0669 15449.5543 23649.726 38732.4093 19158.7969 41355.7672 21169.1658 232270.7916 14790.3435 24587.6426 29211.5913 29936.2312 29936.2312 9480.3682 32184.1892 16321.8335 16458.01 39443.4505 11671.5057 12633.4701 50325.5154 26126.7841 58377.327 69780.0582 34046.4248 59461.63 18596.4432 23428.4685 32224.4682 142479.23 39321.2187 169847738 badh Organic Remediation Aromatics Other aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4003.1796 6012.8112 7592.5784 4058.9963 3538.0528 2120.2348 56094.8003 10195.7735 7532.8076 75917.41455 4811.6698 9287.5387 4350.0516 5250.779 5250.779 5785.6881 8349.0367 5507.9023 6043.4447 4447.4497 6493.2966 10234.2189 9020.7369 2615.4606 9393.5059 3991.1136 5745.6152 2932.40885 3990.0077 4911.0607 2775.8665 7563.4024 126665532 linb Organic Remediation Pesticides related compound NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4911.1414 3392.0741 12495.1254 2841.0685 2841.0685 5881.6307 5533.7522 2529.4805 7302.5004 209401664 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 41763.7762 14558.996 15024.1592 17478.1644 23688.1636 14678.2128 13338.9932 19808.363 33304.0842 20187.2602 610027.3461 25562.918 14987.6374 23876.4798 23974.4437 23974.4437 14018.5591 45694.7133 16243.4707 50909.5932 32647.4075 94419.1182 19090.2123 13230.9471 17457.8507 23003.1155 52509.4542 10544.9122 27210.5935 12186.4444 15434.4323 19506.4546 23269.0036 52240.4003 54023783 amyA Carbon Cycling Carbon degradation Starch Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 19311.6966 6212.8386 9238.0897 7893.6347 6323.0339 5160.9938 80339.5025 10163.7169 13247.3687 12397.593 10456.1286 146554.6465 8412.6046 12346.9043 21066.6078 18767.7981 18767.7981 9812.1167 25091.0369 6679.2995 9429.0825 17721.1043 8312.6871 18672.0692 9552.3916 11322.5038 9358.3967 33464.8807 16131.0677 13705.579 5174.3576 13285.9871 12973.1392 6740.4364 6830.5539 71383812 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5235.929 11785.1568 5008.9711 5063.4165 7400.3477 5147.7948 162090.7764 4068.2466 4088.9122 4308.7532 2722.1384 2722.1384 5536.7734 3984.654 12872.4121 5267.9121 7011.5919 2411.2224 4438.4621 10470.4782 6386.3992 2300.8638 3386.2344 4513.2804 3285.1199 4427.9365 374293595 norb Nitrogen Denitrification NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 10250.9812 16953.7866 9586.6511 3764.0786 4486.7356 11471.0024 4515.9664 4644.7578 4597.4668 130981.0517 8164.9403 5102.317 7407.9645 6817.2098 6817.2098 4159.0118 8015.2704 8876.7481 12624.8852 3361.2396 7848.2066 11209.0671 4922.5664 17255.1794 13070.8344 14666.6296 4602.5755 7580.0691 6332.9255 2578.5784 110817069 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 47754.3908 10796.9856 24042.6656 24468.4419 32717.5784 6135.5329 18451.748 19491.4339 16035.8145 42794.5136 43979.5099 34860.9133 496000.5008 32176.9727 45495.037 52637.861 48499.6195 48499.6195 25300.475 44328.3652 45588.3775 25554.1952 32653.2668 83656.6202 14901.5027 16453.8124 29158.9302 22882.8362 105916.3782 26494.1336 41392.3458 13298.1905 43069.9933 26026.3176 61405.4908 657663.3135 19526729 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 121566.2496 203576.0802 68142.825 47056.4509 23545.0381 14589.3086 26312.2382 53476.7678 28439.3683 22363.5008 22368.5013 33375.3857 307754.9358 24421.3765 222356.371 39828.2843 65983.8614 65983.8614 38319.9045 56155.8057 25233.4634 100393.2107 107990.5888 35543.1108 26652.96 42526.6169 36218.2801 29942.1534 69060.8293 31809.0326 57018.9313 17730.2951 74222.7646 33385.1499 77487.5835 36680.922 91800763 chnd Organic Remediation Other Hydrocarbons NA Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 5517.6581 8870.1352 5649.4548 2920.2737 4254.7912 5189.8062 3233.0153 8659.121 3856.8215 4167.431 7218.8572 3091.3403 2895.6966 7239.2673 2757.8274 3792.8732 4023.9267 63003133 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 20129.0255 255960.3824 9819.3621 36025.3448 9262.6568 36837.1851 12264.1112 35461.138 13552.2138 8575.0584 376756.7907 18390.3741 30674.2969 124344.4869 15241.9612 15241.9612 46849.3608 25207.8824 29855.1316 15757.4045 41183.2437 32090.5109 8233.0305 23973.7062 25774.2651 7923.0527 39506.5557 34980.0203 38953.279 8294.2418 15340.0251 20125.2711 37699.14 36368.8481 330993229 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 33682.5358 24934.4034 20095.3805 14862.456 19226.6156 20048.5024 19847.2842 35305.8909 32803.2849 35525.8071 790171.3865 24298.5957 36389.5849 27764.7926 21870.8585 21870.8585 17753.6268 49167.4119 28540.8527 72294.6589 49085.4625 45335.4189 23346.2067 18761.3821 33669.6901 15002.8054 82830.9891 35232.5046 44291.4805 15921.2267 40509.0561 20910.0905 19704.9729 40132.6449 13898399 dsra Sulfur sulfite reduction NA uncultured bacterium BMNP superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9281.5945 7417.1086 14673.6155 7102.6997 4207.8833 3974.6504 5501.3865 51008.0454 4935.7876 180675.8888 11684.243 7677.1263 6341.0792 4361.7709 4361.7709 5488.1775 15424.3927 10309.3122 7596.2413 8251.0762 8095.971 4124.7625 5340.1804 10423.4187 3278.7657 17098.0136 9164.9492 10783.9034 3402.5351 4893.1808 6117.8404 3598.293 12118.5388 118019166 pcag Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 15775.9647 8174.9236 5356.0129 2994.1561 4770.44 4247.6174 6171.99 8366.2969 3864.86 87398.0984 6468.7747 11032.78 9591.5781 11451.0511 11451.0511 5430.3528 11689.7727 5362.017 4951.8618 7684.9934 10862.0777 4279.672 4941.9509 10796.5842 6488.5406 66560.64 8040.9363 13453.6851 7508.9227 6257.5499 24617.1869 4913.0664 7809.3715 261356260 ara Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 214863.9557 57241.5316 17012.1992 18082.0557 43838.4519 31784.6347 99606.0199 44617.0726 62279.273 66417.8256 121040.5422 65870.3024 43407.0619 61327.5429 188868.7161 77611.0801 77611.0801 100959.347 99612.2391 34851.6932 69183.2774 155200.4908 62385.2686 48297.2076 146454.9181 57284.5855 109397.6105 327245.3709 180460.8022 107026.5282 38686.6738 65764.2413 90928.709 38827.3605 69046.9071 165988110 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 6220.8861 11182.2104 5712.8156 3771.1579 5948.7974 4397.3155 82022.54 25083.3379 4374.8008 4926.7148 4853.0823 4853.0823 4567.1469 12115.2148 8156.649 6915.051 10063.6342 5903.4765 5651.8364 3735.5559 5990.504 16036.7211 9663.4248 9834.1859 2889.3045 4848.6985 6952.787 3533.5807 119698479 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3920.886 4737.1486 4665.8137 4186.6544 4226.9258 3243.8486 2595.4401 181700.2904 6073.1111 5692.0869 2333.9103 2333.9103 3192.1734 6982.0954 92894.6739 4882.9262 6011.6621 15793.7266 3054.6864 9283.9405 3618.0747 9320.1974 281227.683 7834.5087 4009.8852 4114.6876 4086.9967 3384.2475 4720.934 10175525 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 1061221.8463 486065.3605 3114.5416 4385.0405 144303.6399 3851.5562 5721.8919 2891.5572 100682.1677 4764.6393 7628.9441 8964.7872 2824.5145 2824.5145 9432.6196 9290.0521 13121.6137 7624.2085 31493.0983 7612.8483 3925.9584 7347.4782 2913.6877 9507.4783 12223.6565 10313.0641 3239.1662 52475.2393 4559.7123 3659.3791 5725.9291 316981104 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 17371.8998 5998.2244 5069.2189 5858.2847 3693.6642 10407.9634 18749.231 11267.4612 238398.9499 10210.6024 9442.2295 11367.8911 4727.0608 4727.0608 9923.982 17192.2429 13700.0643 10071.1694 17566.8468 22127.9485 6343.7211 8061.473 12788.8861 6172.3239 18763.5006 15085.7871 13285.6693 4895.2433 10355.8041 10099.4868 8266.0646 18667.3499 146232579 ppx Phosphorus Polyphosphate degradation NA Dichelobacter nodosus VCS1703A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Dichelobacter;species:Dichelobacter nodosus; 6664.2214 5371.2496 16968.1613 36565.0146 8925.7773 20630.2402 3956.2309 33953.616 21651.5943 564817.3726 13495.3092 48168.0662 7438.3914 6811.5897 6811.5897 21633.3498 17553.7978 4469.7139 23053.1265 9778.4942 8321.9186 7665.7753 5456.8037 10101.9389 24550.5258 22648.8423 14965.4523 10583.3143 5352.4969 12244.4893 8235.5533 30911.3421 55772535 mer Metal Homeostasis Mercury Detoxification Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 28817.5438 12057.7756 22710.1863 25193.5794 13364.7816 20446.0906 29104.5028 7753.0716 20246.0648 22277.5251 12853.5254 367564.206 32677.5883 23877.8539 18350.5821 13022.8661 13022.8661 32786.5432 57276.55 29610.7394 32134.3178 40635.5666 82359.9073 22317.3771 11888.9771 40055.2343 13861.11 48198.7616 6670.9841 35857.6018 13066.8148 23857.4875 29833.2027 25352.9621 58626.8084 402698363 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fragi A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 8012.597 5046.7148 14149.881 2905.1339 4893.4727 4410.5011 6464.072 68856.9788 4756.3959 4753.5456 5176.596 2363.9003 2363.9003 13942.6163 5583.816 4880.6711 9419.6915 6991.5286 2214.4991 2485.76 2360.5258 10231.0159 4983.7715 7626.6622 3145.0128 3784.3803 4474.0856 3153.7237 6157.1147 344995347 rgl Carbon Cycling Carbon degradation Pectin Caldicellulosiruptor lactoaceticus 6A superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor lactoaceticus; 13231.2115 17889.2035 12628.5142 13158.3689 6644.8881 20750.7876 8804.766 24645.0772 12684.346 12322.4953 5175.6482 315845.4836 17326.1135 15122.1301 5322.7454 5072.0071 5072.0071 9362.4557 31225.8262 16263.4153 21305.645 30340.2645 32039.0986 11341.4339 7051.9039 24016.1081 13363.2334 36637.3082 12691.6232 25525.8499 10785.4321 14903.766 13677.2222 9261.0889 21076.4199 296123002 Sir Sulfur sulfite reduction NA Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 32358.6871 26185.7767 14028.4819 12895.0308 17250.9928 115219.9284 19779.6468 17558.0261 44580.4972 31521.4825 372880.0154 35145.3511 32664.671 60626.7351 11213.6424 11213.6424 9910.9905 23802.0638 18745.6148 18285.7396 40071.9327 10435.086 10387.0048 17462.173 17622.4105 18152.8553 63274.8249 51875.4932 46762.4651 56300.81 29450.122 16114.5332 16451.1211 18642.1726 83842013 xyla Carbon Cycling Carbon degradation Hemicellulose Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 10583.1021 10063.8825 4231.0733 5072.4042 4311.0211 10047.2101 16057.1805 8207.2408 126824.9417 12511.0313 9614.992 6696.5399 10012.1749 10012.1749 8742.8703 12246.1312 14746.7621 9801.4853 19100.909 5401.6982 5059.4126 6483.7691 9523.6169 16497.1357 30525.5192 12594.8704 16898.7401 19145.4485 10671.4565 7990.0055 8395.3214 7551.1653 261406459 terc Metal Homeostasis Tellurium Detoxification Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4012.093 2713.6592 3447.003 3256.0678 4945.3233 4450.3619 86371.2899 3995.1583 5017.3364 3641.7023 6155.9452 4783.1092 5817.809 4539.2139 5451.4286 2153.3449 3757.3899 5932.0437 2661.5144 11264.5281 6914.3017 3183.6984 4302.0494 3123.0095 2446.9782 5531.3573 270345854 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6441.4903 6908.4892 3106.3048 2178.5577 5339.3767 4587.538 96310.7581 6297.6111 5256.3079 5855.0329 2914.7221 2914.7221 3941.8648 10084.9937 5672.2875 6481.3369 47471.0265 6236.3052 2533.6376 4776.9168 6236.2403 3939.6232 12702.5224 5637.1541 7706.8987 2929.3926 8815.415 5675.761 3734.5983 7267.8358 318099790 mer Metal Homeostasis Mercury Detoxification mine drainage metagenome 7957.1932 10211.526 9361.3748 3552.1615 3565.9167 8350.3152 8451.6 90382.8163 11407.2338 5827.718 10619.9802 9089.2017 9089.2017 26622.6207 21686.2595 8236.5856 12797.9424 38829.3418 4075.9209 4808.3952 20892.5544 30080.3557 27060.7921 39670.0139 75239.8263 20775.4078 8972.745 8691.0279 4404.4042 9119.4097 148254273 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6039.4174 8648.0268 7910.937 4517.3338 3240.7448 11725.343 24316.0698 6384.0237 10248.078 9871.419 16594.2157 16594.2157 5928.2277 4948.4422 17682.8668 7266.8553 4850.6054 2319.0512 8669.8303 3630.7821 5550.7867 269119670 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 9800.3449 12634.3321 12631.8137 4317.1747 7780.0992 6132.6682 12062.7124 13554.556 5915.5491 3047.4977 9326.9779 6210.9501 172036138 nira Nitrogen Assimilatory N reduction NA Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 507419.0912 10650.6472 163226.9961 41407.4119 129052.6835 51153.3945 55599.5161 225149.5398 48101.425 50233.6695 93639.9007 65802.6894 1483958.0616 67338.8094 76309.4699 245184.5893 149415.3508 149415.3508 37485.1585 107934.8127 47318.9773 144497.7473 262346.1355 316082.1088 49821.1537 75835.3924 82899.8266 86813.0498 456372.8473 39931.9857 95577.5229 39635.7417 129705.6318 73895.8156 154930.9101 90923.6638 259506943 nitro Organic Remediation Others NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 11498.856 15734.4083 10346.5921 14302.61 4788.5311 4406.9035 24255.219 23760.1487 6683.8408 8600.4635 140210.2599 26050.8418 10106.035 7930.2376 7992.7431 7992.7431 6989.8026 22448.2429 10686.4457 12772.3198 16374.8958 17333.8468 4860.391 12394.3851 16248.3393 6953.9019 22193.3165 57860.4516 14561.9989 9654.3082 8181.1186 11057.567 6729.408 9764.5619 126714812 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3936.7082 262612.2716 6887.5781 8358.8445 4974.1698 4250.6949 2750.5593 2560.3911 2686.2267 7712.6454 7305.9731 2648.3557 2763.2788 2579.6675 259346420 pcag Organic Remediation Aromatics Other aromatics Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 19191.0791 6516.3548 6544.2588 6875.1738 14600.5004 2677.9056 8584.7971 10196.5168 4767.2002 276506.3391 26394.1706 8669.3926 8154.5016 15131.7794 15131.7794 8136.6387 14957.6419 8946.6995 21756.6771 11355.3008 14556.9777 6513.265 5228.8942 11760.0127 4153.7236 19373.5248 7727.4432 10633.6783 5601.7289 9223.7175 7107.1989 4922.5817 16911.2225 393776716 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 17090.1634 10863.9568 45863.6404 14062.42205 13131.0289 21560.0632 10641.0623 18021.6855 21065.081 27319.0286 273104.57 18941.2203 28719.4351 46434.7698 8010.56205 8010.56205 13736.1871 42918.1839 16971.7881 19664.47415 20115.9316 20313.2274 17778.988 12966.8525 19695.919 12674.9343 49020.1447 14791.4314 25682.3454 11239.0558 15085.675 14732.8444 9899.4027 21557.3836 1663519 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 13672.9986 6779.7147 10277.925 7519.4012 9536.544 4431.2394 10365.3497 10679.7299 4610.6586 267842.9771 15048.0987 14039.479 8788.3986 7100.7309 7100.7309 17714.6474 17149.7117 15891.4753 13900.4642 19455.1729 22049.4737 6675.4786 7763.5523 16729.266 5646.004 28436.351 13129.9483 63943.328 5736.6694 9187.0585 10356.6712 6877.6851 22281.5969 111026276 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8812.4759 7331.6793 1997.8196 8607.5829 3367.2122 5888.1002 4090.2347 3095.2575 2345.8753 2983.7755 10342.8716 4645.5454 3369.0676 5069.4345 218240655 ara Carbon Cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 441272.1315 27126.6834 137749.2568 53158.9721 263302.9686 36311.4935 114360.0273 380962.5882 140591.176 135156.4033 128765.063 176194.5367 3138022.205 313755.6241 177302.7605 508191.9938 307067.4781 307067.4781 193100.5573 164824.2773 125432.44 177372.0281 337886.001 558648.7845 165479.8871 134827.8408 241146.9518 171211.003 1099240.8574 264293.4668 198207.255 247499.3728 170670.2661 176751.1639 112172.8836 166286.6399 291441677 alkk Organic Remediation Others NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 23184.2833 76839.9564 9107.1632 12266.6148 4937.372 54531.4457 35177.233 3607.6591 7361.5015 12317.7747 25493.3018 122246.0672 7589.774 10487.9204 12065.5575 11610.6593 11610.6593 9423.7339 29934.2206 13070.4505 116458.5159 30285.8778 9139.8267 11818.8783 14904.0271 12354.9965 11651.4022 18999.9223 16000.5948 13591.5796 7093.5035 9819.2954 7208.2432 9357.3921 14487.0315 319417212 xyla Carbon Cycling Carbon degradation Hemicellulose Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 5274.2001 24113.177 2162.7554 2601.1952 2023.4366 5374.0899 78095.9722 4028.7789 2245.1 2245.1 7171.7045 12924.466 8259.7604 15697.7374 5117.842 1819.8168 4339.9523 3138.4848 407896503 linb Organic Remediation Pesticides related compound NA Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 74611.4103 68500.5879 44887.1029 146363.4226 21648.2596 56996.5071 80000.4532 38018.499 58547.5429 94327.4783 108784.0442 3063106.4305 96424.2678 153057.0731 303466.9915 114311.8836 114311.8836 32819.7197 153883.7577 97644.444 79503.9464 372817.7351 136460.993 102596.8473 61955.0956 174934.7881 105163.0249 517350.7725 84871.3017 144512.7008 45520.4503 77818.5544 107452.4114 155167.3597 88538.8971 119954449 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 125186.0652 198230.3954 50126.4206 50747.4679 100459.3433 51030.7802 74529.1726 72806.3039 42769.9407 75438.8859 109394.5381 59025.3842 748169.0047 429396.9556 199462.7529 115057.7202 135302.8526 135302.8526 103952.838 117975.6583 42213.2703 59932.0577 161050.4707 103513.7695 79369.7218 75435.7448 98000.9423 74799.2794 125178.9697 62700.8403 132063.7225 222507.8038 92329.3636 82411.3217 46881.9478 214483.3475 76803684 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 7930.4519 4728.0047 9025.1179 4604.5716 9782.8018 2468.7083 4825.8783 20156.2744 16016.8667 140334.7171 9645.8605 22952.224 12677.0709 9079.5868 9079.5868 5213.9066 43843.8639 6994.6059 8297.7223 9419.1888 12218.9803 4499.4241 11992.0103 20021.0383 8384.9924 13455.1882 12186.074 11981.3436 7051.4619 8253.2506 12248.8635 4229.7327 18341.6309 21232911 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 174566.3397 37218.3745 102954.3365 87231.9039 73228.0992 64112.9613 133797.3451 202824.9526 199344.534 211403.663 119701.8554 207571.7028 8971009.386 197465.1714 210566.3675 546929.4232 214244.5379 214244.5379 62434.0606 239386.689 112743.6202 138621.0093 244985.3825 849819.4916 143738.9882 125128.1409 345663.0646 138198.5601 1190534.8039 297991.0792 181244.5903 104994.4172 203484.9414 212751.5042 148928.5671 124160.2679 363805725 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5779.9455 3190.327 4817.4784 5297.6633 3873.8299 5195.8568 2714.2982 118333.9203 5045.3287 9005.745 4071.3088 4071.3088 3712.7945 8945.1449 6026.9219 9530.7089 11424.929 4296.2493 4556.5946 11469.0457 3535.8442 13705.3357 10206.6216 10172.6139 6000.7384 4300.3487 8116.3928 15495.9637 5551.3658 377525149 alkb Organic Remediation Other Hydrocarbons NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 21504.3759 13244.5726 5674.728 4923.1171 2363.9886 83315.8862 10150.7586 3865.2841 3865.2841 6075.0627 3334.5611 4871.4652 2074.3066 4920.6089 3141.5444 344225490 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 3708.9046 3699.501 2056.5228 3488.3614 6259.7791 4866.0375 4909.9465 4522.2343 2593.0099 2746.2354 4020.9564 3193.8046 2468.7562 5095.6504 67524479 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 528268.0768 96573.2105 649384.8421 638298.9087 904281.9765 753631.5487 477675.5028 711952.7833 590617.1462 500142.7386 501479.5436 401469.9547 8399322.9215 560002.9422 646783.3202 1176850.38 626897.2892 626897.2892 322940.6038 658877.2177 397347.3132 744833.1687 794907.5374 814612.7179 389432.7213 346155.8132 367452.2919 258603.9053 871350.0937 474603.293 429901.6903 392261.8679 317109.2307 358517.6406 307881.9995 1229871.8517 343924910 gdh Nitrogen Ammonification NA Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 10442.2343 18151.9904 8595.9938 10619.5461 44453.9714 6765.907 5629.9212 4942.1012 8451.2486 6682.3909 361147.6726 9073.2111 7123.8421 6434.4859 6234.8512 6234.8512 7423.3291 23391.7631 8709.3773 7313.6183 14374.0039 15177.0629 59172.2538 5347.3904 11015.431 7408.3856 28237.6188 12335.3604 17186.0335 4692.7371 9533.9031 8245.6218 10386.2527 11622.1988 365815451 cysJ Sulfur Reduction NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 203389.0994 38276.3833 41785.5049 18373.9481 51823.7709 18874.5176 43689.2069 90696.1483 55567.9954 25520.6488 51063.565 35666.057 1143933.4375 41880.4617 203570.8266 30797.1278 71779.4039 71779.4039 41695.1022 75516.4808 56004.3671 79377.6514 49253.1324 577560.4002 39929.2323 30881.4875 47541.7732 67178.8921 142967.7709 63279.2578 58600.5462 31901.5141 44860.1053 47393.5723 29593.1708 79186.9477 269928479 linb Organic Remediation Pesticides related compound NA Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 75363.9413 11837.8405 51954.3932 11720.9569 12976.112 12057.5031 36935.9776 32771.6588 33718.5364 57409.8998 66536.5527 82074.0323 581778.071 432015.5277 66858.4877 163522.173 40455.279 40455.279 552204.3948 92932.5571 31900.3342 69086.9019 112949.6448 90015.9276 31563.8848 30474.8411 54781.2499 34003.7256 108734.4831 75291.5445 63204.2329 24055.2394 108018.433 66032.212 33477.3857 48667.3747 254262253 amyA Carbon Cycling Carbon degradation Starch Enterobacter helveticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 9299.3693 6303.8697 7146.8586 84665.6591 8581.3916 9656.8001 6134.8091 11193.6448 14818.932 8296.7356 308684.7652 39381.1864 11663.2133 13665.2878 23493.6858 23493.6858 21700.6912 21419.8404 13748.6968 20869.0529 18851.5519 18099.6577 6390.5547 7802.8651 18114.4982 9757.0833 47201.8511 20646.8559 19049.8945 6090.2102 26319.6937 11373.1758 6827.9729 22362.7559 341614895 B_lactamase_A Virulence Antibiotic resistance Degradation Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 4138.957 199822.8265 4004.4164 2800682.9675 2166.4767 3206.4245 2143.9884 115413.05 4429.658 4413.2508 6980.5182 6980.5182 2687.6701 26979.2609 11727.7678 7523.9419 2306.6925 11481.7808 47116.1945 5656.7747 10981.8955 11634.8685 22100.6786 3323.6348 4515.945 3996.7314 11007.1608 5545.1108 309790711 PRI Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 7460.3907 21270.2924 4553.8581 2277.0609 8579.0637 7484.1281 15284.1571 113415.4092 13853.4194 3535.0917 2949.6653 2949.6653 3945.4626 13584.9313 5186.3651 4733.7028 9865.7411 5127.0923 2339.3253 3558.1705 13289.9736 4329.6683 13426.886 5681.1837 8078.4933 3225.9372 3421.9685 5317.5947 2382.7466 9185.8547 31620028 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 51908.7063 191640.6816 210811.5375 204994.2043 91832.4747 79873.2583 84204.4113 15425.2329 36241.8283 146707.9794 42241.2145 1697138.0384 75641.3631 97625.9235 211229.7023 113687.0129 113687.0129 28534.6434 51569.1951 34160.2927 93433.2497 43378.1015 34335.8113 106814.8915 66219.7803 73304.5618 51284.043 20749.6393 69862.1979 82035.0685 28467.7286 33582.4844 48120.5965 29008.0256 28101.6809 254970801 soxY Sulfur Sulfur Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 20127.3482 4410.6339 17521.3811 5596.1511 2816.3113 3341.9027 5275.4183 72780.8459 9596.3074 5251.6982 7652.3647 6757.5888 6757.5888 5865.4643 9507.3379 5656.1936 4839.0943 4404.3686 4201.8201 9336.5568 3301.221 6679.2909 12817.9862 9508.4328 5650.7279 2074.7103 3059.3154 5807.4657 13771.0952 17691.1002 109900027 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7026.5981 4405.8788 2884.1238 2402.7526 2685.9426 3980.0399 5798.7264 2563.8631 95443.792 5433.304 6781.5796 2323.6234 2323.6234 3477.5614 12951.5139 6460.1881 7880.8151 6336.9282 5944.7078 3432.2435 4128.7554 7004.3554 3448.2927 11468.2006 5125.4661 3121.8501 4886.6281 4045.7292 2929.6535 5913.2195 46103450 nagg Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 5674.1277 4875.7915 2564.6003 2294.2058 2305.1842 2915.4538 2281.9934 3504.9892 5776.0921 2330.6501 2330.6501 5769.9345 4069.6244 4259.3105 6646.0443 2374.9231 12622.654 2222.9112 6461.9405 3610.5871 2593.314 6155.0542 421953154 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5414.5893 2066.7221 3013.6582 3592.9895 2381.3494 2381.3494 4132.2044 6308.7693 3922.0069 5742.2058 2671.202 152963807 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium occitanis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 4474.2832 3788.9196 2999.3995 4101.7388 79102.0539 3642.054 5286.8872 6333.1326 4402.222 4423.8259 5230.3523 2294.1858 2459.1148 2866.3955 5515.8955 2289.8087 5383.0122 160917424 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 32010.7136 15346.0004 41193.1261 3150.5252 6347.4037 21584.8608 47215.5715 47752.3378 18775.0732 80958.982 7984.2539 28350.6854 69066.7277 9340.3635 9340.3635 6893.8717 39585.1788 18892.7043 8432.8581 37816.3137 220526.8565 10198.8905 9863.0916 19624.715 12969.998 32012.1757 24868.2107 17859.8907 27704.9349 23857.079 36291.8817 46087.0085 5913.4503 302475167 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 40345.142 6022.2447 13744.5536 27317.5331 11442.2924 40868.7339 19187.0623 5417.311 8370.4955 13581.0446 18137.9105 374425.4256 11613.2049 43196.1428 23241.2584 13101.0773 13101.0773 16574.4686 28275.9458 11249.6461 29866.775 24956.7703 15906.3001 19241.8676 21983.8933 29627.3126 32331.243 53225.7652 38977.2491 32973.0898 8588.3294 38345.7642 25890.76 7853.495 14452.0932 387126746 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 5071.6964 6673.0963 2801.5598 2815.7292 3751.97 3907.3316 89334.3223 4658.1931 3515.9101 9164.2908 5216.0068 6933.8396 5222.1315 7659.3174 2497.9112 3068.6127 7412.6797 3125.1977 25151.5257 7871.1364 5973.9608 3429.8667 3249.9828 5303.8805 2982.7531 10261.5737 301335089 merb Metal Homeostasis Mercury Detoxification Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 30528.1841 36132.4029 42942.119 18546.2502 14823.4673 4447.9394 16560.7311 12274.7163 8262.7167 28301.1522 12795.158 129180.4222 8395.7824 33028.5098 11861.1804 11861.1804 14371.054 22237.9908 6548.4425 18690.9415 28237.8409 9608.4158 15078.7645 9436.8467 11310.1036 9070.2175 36088.0152 24128.0029 44604.4599 14334.3348 20314.5448 34794.4926 7746.1269 23157.9012 3925401 norb Nitrogen Denitrification NA Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 18046.866 12570.2706 6911.8765 8052.3695 19505.1339 48387.0801 9438.4543 12596.1708 10358.6177 14897.4514 23903.3096 199505.9865 11394.9497 33713.5969 13758.1329 5799.1857 5799.1857 17245.2226 20222.6542 10124.2273 14218.9007 47487.8926 21078.3069 18385.0057 9688.5117 35239.9074 13975.7922 31551.8836 14925.6098 20021.8035 15628.5425 16955.1514 32357.6558 10327.977 19630.2099 74038296 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25813.6429 6984.074 7228.9991 3566176.4084 6558.875 5873.9785 5873.9785 4600.2696 3218.3048 12750.3737 4615.2515 10194.8228 7139.4996 7260.4373 2780.4972 14721.294 64623.1905 4884.7206 148246378 endochitinase Carbon Cycling Carbon degradation Chitin Trichoderma sp. BTM-T3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 79674.6909 233275.3055 9356.2612 9356.2612 3776.1142 76253301 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5115.8194 5690.4388 5673.686 21731.4609 3044.4535 4868.532 8333.9962 6300.5023 166839.5859 7398.3236 11499.0425 24566.9355 24566.9355 4729.2666 11377.2233 10326.4036 6412.7526 4903.6205 9136.5763 2156.4552 3517.479 10343.7156 2766.1466 9900.1452 5651.5981 7585.6136 3505.6177 4755.2274 33286.2471 4163.1121 8224.8543 119536073 badh Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 30795.5864 173283.8981 27990.9715 31201.3256 315794.2164 15658.3625 24714.9003 98338.2324 46714.4997 58180.69 105060.2889 85211.7783 531301.5156 42061.396 31878.3856 70260.3443 93021.0836 93021.0836 34145.4281 68548.3669 28098.8588 33374.1159 50946.1196 67526.2774 25479.4995 45263.4805 39005.6974 101332.6804 74884.1914 129699.979 43846.2404 51791.7247 65025.388 57410.0064 77790.8605 271507.8321 188485517 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 25686.5885 5958.4852 3292.7516 3580.7987 3772.5541 7421.595 23874.2327 6625.7607 2559.0855 14231.4646 7668.4124 3154.87 4335.7039 2603.4828 146192230 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14000.6327 5673.4849 11768.6821 18551.4052 9612.4401 3391.4357 4188.0606 2792.1468 6845.9583 34382.2608 10945.6826 155607.3878 6733.1351 7406.9321 10212.7424 9617.3496 9617.3496 7010.0377 16423.3586 9733.2742 8649.4661 9444.8363 10722.797 4048.1867 3975.5956 14429.6709 8740.3045 29167.9799 18763.583 15248.601 6443.2088 8255.8901 5648.6207 8504.1226 10484.1386 84310709 merg Metal Homeostasis Mercury Transport uncultured bacterium superkingdom:Bacteria; 8989.8991 3698.4811 24692.0372 8542.0424 5242.2119 3863.9548 3417.0943 402842215 pcag Organic Remediation Aromatics Other aromatics Klebsiella sp. OBRC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 20081.055 5501.0868 4806.3411 26140.3648 6322.1549 2659.9141 4840.079 3729.1906 6137.9137 9326.6602 4839.5687 99561.6255 7521.2017 12718.3174 15583.4249 9873.1299 9873.1299 3721.4644 15284.5089 8560.3187 54112.8904 103625.6011 18078.135 4820.2141 6704.0674 9957.2542 7682.692 16975.4624 8396.7156 18340.1334 4705.5275 8353.5571 6388.8077 4007.9536 6638.0251 388006822 dehh Organic Remediation Chlorinated solvents NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 12396.1479 9291.8045 7283.3145 5014.3579 3653.0223 4304.0158 4998.9906 583243.4434 4037.7592 11633.111 13639.8306 7433.3522 7433.3522 3188.0319 10616.5043 4431.3967 6867.0814 4929.592 4205.7645 14467.2196 3256.2388 6299.3553 9793.1181 6094.1342 49256.8939 3280.598 18063.0928 219948862 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 5479.9731 9457.6793 20576.3806 4149.8269 3212.9808 5849.2284 4931.2863 8175.5509 1924.2416 1924.2416 3086.398 7200.1067 4981.9179 9941.479 5565.2605 2477.7966 4774.9694 2335.8606 14092.6931 9215.8975 7108.9226 3833.2319 4191.4581 4428.4635 2921.7841 145046938 cysI Sulfur Other NA Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 9665.0072 10511.8956 7311.6432 5323.1097 2976.6333 7590.2737 5086.1706 2905.6553 2905.6553 7313.0533 4140.5168 4321.7116 6886.7036 3377.1615 7407.3567 4957.8963 7116.8182 9924.1607 16082.2283 3996.9789 3038.9118 304342912 Sir Sulfur sulfite reduction NA Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 28110.2609 4703.1401 10376.8087 2466.5417 3698.4828 4088.3568 2801.8747 67806.9384 4154.5451 1881.4743 1881.4743 3908.4427 7456.5179 4054.5643 31789.2783 13496.97 3864.7118 2722.70705 2625.98725 6851.9469 3205.78335 10809.58785 4010.5538 5704.60685 3322.3592 3066.66335 2929.4627 3293.8876 85671675 nosz Nitrogen Denitrification NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 22164.4014 37726.7974 17339.8276 208670.3776 125454.2683 17082.8489 16000.194 7062.2287 37564.9226 23353.0754 16315.2758 707762.2192 34401.1908 28230.4515 41632.6429 32750.3598 32750.3598 16689.4652 67686.4723 27801.7923 21066.3354 100220.8663 24951.9769 32754.1797 21599.0528 53762.8607 26162.6314 47651.7628 44045.2039 43104.3913 22368.6951 19940.0304 22671.365 15621.5547 29838.9577 192764428 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5005.0472 11474.3768 4712.1157 6519.2345 2933.0659 10248.8868 4202.5824 18941.0429 6403.5462 113247.4818 9453.181 6500.8693 13744.5318 13744.5318 12367.5535 6120.2781 6878.7394 8844.4222 7467.1103 3143.0072 5538.7904 6819.1308 9342.5684 48244.6382 28506.0975 9610.6836 5157.7992 9274.5712 6620.8311 4512.5733 302309595 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 8698.9985 5024.3036 59009.7614 3692.5417 7534.0095 2971.8653 5469.9413 5483.7175 9014.8693 107077.1145 12130.0458 5488.6938 15863.2698 17202.5762 17202.5762 4950.2928 15346.0096 5420.9344 9344.1148 14596.8769 5374.909 3079.8942 12291.376 11125.2685 9149.1864 10218.8131 13275.5431 5048.4725 5237.7004 6237.252 4351.933 9697.4021 118424418 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3859.9305 4093.9238 4858.8048 2243.2156 4677.0064 5772.0496 2474.0914 80292.2627 4276.9527 2381.0546 2381.0546 8900.4337 7460.9578 5955.3051 6673.2026 7968.5889 3808.6615 7436.4693 2608.8567 8625.1788 6634.3629 9801.1006 2632.8633 6137.0682 3581.7341 7886.5975 291372762 dehh109 Organic Remediation Chlorinated solvents NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 9480.6638 9984.5754 15497.1887 74280.6716 10408.2587 20102.7692 8580.0001 200891.3525 18809.8224 14261.1122 23053.7116 26395.1343 26395.1343 7955.902 29017.8086 16630.9927 54728.8795 13000.0582 6459.5898 10867.1688 9058.3101 13238.8558 13936.7421 46143.2048 23323.2812 16293.5802 6998.2412 15922.7992 14366.7786 18299.5994 14643.2276 318041673 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 27189.9493 9750.3145 21104.6181 313559.174 48796.5793 22773.5768 38358.3748 30239.5996 19109.677 22200.9698 25093.4643 17486.3072 673081.7146 40863.8986 36273.9578 36738.6985 24198.5703 24198.5703 17512.5549 48420.2825 32385.4878 34491.0983 30899.2704 44640.598 18412.0658 18997.0138 45325.3716 43294.8933 286782.7442 46124.6874 61450.9487 20695.9711 95554.8246 17976.1287 19062.0262 48327.1237 169793396 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18393.8855 29419.0136 10191.7118 19276.0075 9442.4893 4636.5863 16729.5178 125106.7573 14922.3502 16113.9605 25989.9506 11579.6567 569462.9651 25579.2875 20258.2759 19474.0035 12897.6531 12897.6531 13143.5866 34109.0124 16676.1183 53121.6843 27670.7598 28783.9186 179287.9833 12026.0701 20781.6647 11958.4492 43581.9354 19524.4675 25790.0187 14706.0892 18476.078 16488.9832 11665.6348 27725.1188 383367422 xylj Organic Remediation Aromatics BTEX and related aromatics Geobacillus thermoglucosidans TNO-09.020 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoglucosidasius; 7009.7059 8750.9902 9357.6759 27745.6485 5498.8916 5515.1728 8586.9643 30494.8159 7631.9187 9218.1448 10982.8052 161677.0837 9248.5557 6937.4046 17464.7382 7125.7245 7125.7245 6122.1965 15321.6959 10743.0258 7555.5521 7508.1699 99506.1709 4659.088 4406.9248 38314.8388 4872.3388 17397.7811 13512.1359 13131.0967 8523.4573 5686.3154 5085.1847 3995.4585 12951.5075 255020282 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 484432.5349 145367.6017 79465.2647 1801910.8128 127642.9025 51734.3718 261390.4889 512493.2773 209071.8102 155511.4878 223438.2634 204293.2634 2168621.6193 230458.8573 205874.1767 336647.3199 262232.8943 262232.8943 160610.8614 434961.9315 88766.6018 877693.0426 298572.9201 439415.4858 176599.7553 105090.5048 892059.4839 199597.6772 1382299.3897 354809.5819 264991.2807 160385.0241 185201.3645 221163.3604 432243.0747 1480215.382 225568285 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8441.3219 4854.7022 20066.5029 4511.4221 2831.358 11440.0801 5637.7087 5637.7087 5677.7155 3966.9469 7015.6473 7097.4674 4583.3667 4807.0979 2587.5339 5789.4661 8553.0466 4882.6275 6796.2168 4178.8301 5923.1714 5029.0486 40732.934 320450230 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 28197.8884 15314.1123 14167.6798 19755.9738 26936.8969 8992.3452 17065.4792 6994.8637 16264.3797 20401.09 10616.0663 437451.4964 22153.2436 12921.7421 13312.861 15765.26 15765.26 11004.5794 36068.0058 19677.2666 18161.8065 34639.9569 35624.9037 11487.2524 10677.0754 23248.5096 10280.5235 44546.7348 25588.9189 24107.3832 14197.4967 15367.0097 16041.2445 12632.5598 63433.9144 334858987 xylj Organic Remediation Aromatics BTEX and related aromatics Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 143213.7598 284785.5032 257757.4409 12424.351 13030.8459 4741.5911 6460.0578 8660.2984 176821.02 20380.5919 25809.9635 14955.6134 318848.9498 12689.0231 8702.8693 21192.9438 7283.2487 7283.2487 25373.9726 30703.8743 11111.0672 29575.784 30070.5543 22925.2089 11280.2109 11573.0322 15509.8938 7705.5956 54216.6688 32427.7586 18967.0527 12327.3244 15328.8317 21118.0359 9363.2101 55511.9291 162284361 amyA Carbon Cycling Carbon degradation Starch Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5721.2332 6526.1338 29117.9025 2005.6208 4259.3962 5467.5639 11832.7048 18393.0479 60792.2184 20473.4042 10851.0442 10809.7664 6586.3994 6586.3994 2635.1249 18001.9886 9020.7866 15633.9903 9119.3488 4291.2036 4136.6193 10011.5996 17890.7085 33301.6234 20784.7547 7141.037 8432.7031 6127.8406 8266.4172 8684.3828 10220.8046 15323.3376 119654875 amoa Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 4019.256 7947.6432 3166.9636 8934.9824 5577.7323 6397.2339 5262.6537 2757.5714 6080.1233 8897.7944 7954.4735 3114.5054 2998.8974 3106.2934 3025.3047 4228.2722 390944408 amyA Carbon Cycling Carbon degradation Starch Belliella baltica DSM 15883 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Belliella;species:Belliella baltica; 4142.0866 3767.2193 96081.3434 4785.5262 3366.844 3366.844 3981.058 8064.4821 5671.1117 5363.189 3666.9939 7699.3705 9589.4151 5944.0809 9531.1969 1902.8144 3789.9489 4009.816 2877.3516 27351771 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 4425.3971 14221.2297 12656.6746 3437.0204 11661.0332 4229.9827 68702.3014 4012.748 23842.0378 2513.166 2513.166 10873.1571 6350.8014 5359.4408 5373.8976 2574.0853 3221.0424 5278.1215 2582.8833 10436.3807 5803.3513 2200.8002 3168.4438 3072.3218 5981.0707 6455.8073 387163414 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens A506 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 17483.5577 6833.5887 4509.3935 7691.266 3071.3448 4245.9716 115150.6457 3327.7214 3327.7214 12499.434 3658.2517 6234.801 3818.0619 95305.7041 2562.9965 6360.7705 6096.9048 11409.7623 6228.6496 4245.5512 2549.8597 5374.3247 3238.7483 5443.31 334901680 dsra Sulfur sulfite reduction NA Thermodesulfobacterium sp. OPB45 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium geofontis; 17115.3523 21134.0106 10762.8478 11167.8658 9761.3985 5469.9955 10896.7561 15659.1623 79474.4855 296363.0747 20765.7215 13540.6521 9388.6489 55181.2488 55181.2488 11049.7831 34575.6342 21534.0031 12010.7893 15659.1241 26951.1657 13116.1883 8422.9095 20685.2792 19426.7396 29496.1689 12932.5783 29449.1539 11328.1159 10617.7584 13322.9354 8792.478 19471.5761 50982462 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 24600.5038 4228.4964 10787.4839 99426.4482 6074.5872 5886.3601 30081.2907 10983.4683 183691.8329 24201.3386 7899.6083 7725.5753 15246.6088 15246.6088 5881.1197 32152.5416 8532.2211 40755.0226 13695.4472 36594.8816 6541.7099 9077.3045 10402.8655 12193.1807 24663.0571 16719.8404 16901.9544 8559.9259 13668.2189 15587.0802 12465.0156 113871.875 169885312 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9566.8027 7008.7927 17433.7684 6792.9902 10786.3083 13243.6525 4173.076 9224.8722 3648.0516 159896.3318 10899.2228 7212.141 6899.0078 4642.7795 4642.7795 11313.4117 9847.499 11364.6296 4509.9732 3917.5085 4210.7855 10380.423 4645.0274 23643.0267 11304.2276 12145.2687 5212.3729 7481.2593 4260.223 4546.5111 7074.8124 197768726 terc Metal Homeostasis Tellurium Detoxification Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 41325.1587 9318.8811 6562.4359 12886.7223 4189.5137 4229.968 8153.704 5052.2767 89698.6714 18040.9873 764767.1275 31000.4683 4425.1641 4425.1641 101017.5565 19085.5297 8137.1978 11260.8509 16548.4972 11645.6794 15233.6161 13310.1607 7712.9852 31023.1254 24551.6944 10956.87 9532.0118 7414.2771 15466.3252 10905.4571 9679.5115 13275.8203 381179493 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 26914.2477 12303.4268 6936.5286 35212.0424 8684.7663 5721.8698 14577.3342 8314.1581 17752.356 22958.4071 42883.4642 422827.1062 50829.6166 783883.3436 26882.0762 53351.2469 53351.2469 16873.9106 53599.7213 17180.0304 195949.7825 88046.1528 62471.2671 15611.8124 21158.5014 29905.7619 21287.2869 109412.2252 75754.7921 38217.5773 12276.6026 26198.3528 29695.0297 12246.1854 27645.1431 302408903 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 20086.7928 2019.073 3137.4924 5078.9583 3978.2901 10517.6743 53871.0609 31902.6891 4913.0115 9052.6878 4623.5065 5451.6716 2257.3247 2514.8624 5072.4447 1909.1187 8541.9826 5048.8002 5081.6669 2964.7946 2855.5067 3469.6119 3536.2587 350530993 nrfa Nitrogen Dissimilatory N reduction NA Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 6594.9541 2301.6235 2910.0953 3107.0389 160201.1129 10360.1562 10294.3317 4785.7249 4860.7583 6506.0243 3140.5968 2889.5974 7939.2922 7025.3267 326414223 vana Carbon Cycling Carbon degradation Vanillin/Lignin Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 4208.1915 3537.4022 4108.8125 3262.8944 16647.8863 5508.0741 3167.1945 3167.1945 3563.6185 7029.5731 8383.6494 3770.71 5052.6555 6798.488 2737.6685 7980.0173 3757.7807 154286.5098 22415761 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechocystis trididemni superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 4075.8501 3609.4467 4020.7185 3794.3387 6585.4496 8103.797 82588.946 2142.0898 2142.0898 5403.2247 8335.185 4470.3957 26586.8181 2472.7433 2450.5157 100703.0776 9939.177 6073.0738 6241.3525 3193.8629 3534.3937 6631.5565 7201.5657 345443165 vana Carbon Cycling Carbon degradation Vanillin/Lignin Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 9154.2614 4980.9611 12223.6569 2562.5046 3034.4376 4433.302 3617.7357 64120.6749 3400.1149 8824.9397 3491.7987 4679.4581 3023.8903 2815.9834 2949.4142 12288.125 1901.6386 3146.2139 3379.8618 2463.3634 5140.5329 347731629 dsra Sulfur sulfite reduction NA Desulfovibrio sp. A2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 19753.2891 42934.922 23547.7501 69661.6288 20736.5367 6336.2489 50969.6072 386781.3101 26736.8466 31496.6474 37369.3073 1147504.9684 28427.7423 33295.2408 31880.6808 39702.0966 39702.0966 6545.9718 78216.5473 16539.2352 23920.1995 33818.2659 18542.9978 10420.3245 16861.0425 29049.24 132875.4073 57411.3744 40026.117 51659.3186 37333.0823 20151.7036 21575.654 361421.613 27991.5225 407787561 pcpe Organic Remediation Herbicides related compound NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 6359.9232 11307.4886 2349.7351 3323.9589 21258.5896 28083.6535 68535.8637 15337.7009 5714.4485 10000.9789 7292.6367 7292.6367 2631.229 10716.4181 6481.5952 16909.1114 5400.4589 8599.216 4186.7856 12169.3679 26071.915 11546.4101 4841.4304 4385.7483 4564.4097 5800.336 5361.7366 145847410 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 498176.3136 8177.8749 19801.6187 3959.2339 2336.3009 3637.4119 92849.0622 4283.2724 2848.5776 2848.5776 7239.1379 995253.563 2513.9979 6036.885 2561.2521 5182.8136 3397.8478 2736.3621 5614.2545 324314668 amyA Carbon Cycling Carbon degradation Starch Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 7282.5132 4712.3347 4198.9307 4020.0023 2864.7191 3053.3762 5187.394 3564.4331 4202.8485 2876.8874 3236.3452 6658.7626 7235.4204 5236.0256 4361.5173 23216.174 3284.4035 2987.7479 5979.6552 2288.7131 12718.513 14640.5972 7213.3649 2496.7442 4400.3517 4220.4597 3638.2399 6433.937 340841629 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 6397.8196 4950.2593 11171.0894 9962.8901 94514.0651 5839.3429 5433.0339 7384.4802 25599.6926 105859.3672 6101.2524 12452.1117 5813.3607 5813.3607 6245.4484 6670.0647 4616.7493 17101.4416 11873.3083 3764.4058 2506.8846 8707.71 10268.3297 4496.501 14214.6388 7459.8514 9603.4942 4438.725 4637.6421 36687.0852 5649.1836 5663.12 281401445 amyA Carbon Cycling Carbon degradation Starch Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 37106.9732 12236.9306 10935.0638 44325.9944 5473.0549 22079.3163 13615.2246 15625.3988 12267.3401 26160.7722 9685.6816 254291.8213 17661.4092 24956.1804 21229.1439 22403.0271 22403.0271 12804.3789 25417.355 16604.2787 18854.5975 30565.1198 114207.3267 15567.3292 13936.0993 31153.7614 8353.3526 40940.8518 26625.9692 33453.9042 6889.7462 15320.2452 28218.8069 13092.7874 27827.6087 319413907 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 13125.8604 12890.8946 145551.3443 14876.2026 4025.6721 6199.4105 6343.2781 16534.4246 12373.1745 12503.7208 119155.068 6454.9062 21160.5903 18242.4499 16648.9885 16648.9885 8876.0024 15234.9268 5222.0079 10828.1252 40738.2029 5594.6678 6376.4685 18357.5032 22334.6317 4503.4314 38888.4026 12351.2459 30474.5368 5025.9312 6241.2095 25881.5301 6908.7483 12434.2709 146323424 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 253751.7021 61894.2032 25503.7885 40823.912 22859.3471 14523.3786 562546.5118 206510.4523 76191.2172 59630.0974 107936.7267 94248.7902 927544.1231 111125.685 181387.0473 92741.7649 76124.3454 76124.3454 37682.0522 127760.8146 43604.4197 143411.3137 171424.5373 96786.9909 47719.8555 45968.0699 71282.3235 93053.142 248542.9908 40049.356 75545.6632 81895.3757 69525.7289 139074.8366 85530.6064 64630.5458 328813287 ppx Phosphorus Polyphosphate degradation NA Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 39131.1608 51406.5699 21989.1618 11803.0131 5531.1369 19700.4681 82207.7451 52008.9337 29649.6658 32538.4894 62028.0231 2102553.6439 14226.5986 50176.7246 373407.9477 58780.2499 58780.2499 15710.9633 47164.0882 21172.0583 29211.7182 27730.0188 47319.6493 43789.5078 20651.9689 29952.5893 27255.4518 68622.7251 17760.7232 40603.2067 16163.0104 91617.4249 31365.4695 14048.2919 22593.3725 386856591 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 35604.2172 16525.4974 45964.8062 29016.3124 4792.8386 34839.4485 16982.2846 66249.4275 20768.7759 48945.2914 165708.3547 46178.9882 10375.5301 27437.4123 16081.8452 16081.8452 82409.4529 14701.1722 19464.6294 8061.0365 7051.1404 6319.2459 21125.7534 19472.2133 5586.3197 29637.187 14668.095 13694.3838 5546.5571 6607.4871 11865.5041 6348.332 12444.3646 118468526 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 33444.4813 28033.9071 4294.2325 6685.2119 7913.5433 8433.8091 14804.0556 10725.6243 146478.9175 6136.6903 71636.7493 73298.1187 32286.7297 32286.7297 4626.9646 25285.2288 16854.927 10800.2765 16262.1437 11663.5081 23416.908 11266.0753 18226.6843 16181.4177 29685.3269 19610.9981 17248.7887 12103.4952 15573.7747 12654.7272 9217.6738 40320.4667 188578912 pcag Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 33843.4374 131727.4829 49717.3849 75755.2931 20995.854 29446.4674 55023.7228 28007.3019 37379.8213 57696.1193 29203.3383 945583.7377 90293.9557 46816.2862 44482.9359 49825.894 49825.894 47668.1202 94133.8225 57678.4997 42283.5194 63085.5441 47162.9511 45315.2934 52384.9608 84569.5789 49140.3076 137685.3208 91438.324 58745.5165 29411.2234 39585.8202 42941.8212 41879.1504 60411.3368 123967458 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 4628.7405 3025.8101 3809.3495 3468.731 104501.0267 3451.3447 5911.9614 2867.5455 2867.5455 4365.1779 6369.6529 2736.9097 6743.3107 3864.3448 2701.6612 2510.8678 4625.0342 2854.2218 149783415 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7469.7241 8067.187 9540.9137 12141.5881 13538.0394 15423.8785 13139.5104 4891.8924 76810.9089 23767.1232 12937.3688 3982.8642 21499.3877 21499.3877 3965.7672 11819.98 14212.3166 4802.8848 8242.3019 2282.1638 6395.5777 10677.8874 4507.08 36907.3191 11179.9162 13811.6612 3167.9135 7613.593 11388.5483 3480.84 7711.4729 240138506 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 5534.7479 169386.1915 4777.6621 3741.2508 3877.2296 4678.0481 4925.7532 14849.5479 5212.2708 47220.8086 2874.8877 2874.8877 10265.7656 7729.0421 10261.8862 2723.5308 5261.4989 11549.6018 14096.333 19321.5405 16549.5669 13926.8229 4767.9936 5560.1329 6804.6429 7597.8586 7117.9352 31338549 one_ring_23diox Organic Remediation Aromatics Other aromatics Ralstonia sp. B15 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 15713.4401 12194.2579 15221.3407 16811.1527 15652.0381 15619.3761 10584.4609 19093.6631 12742.6402 23198.602 260695.3198 17057.7548 27872.207 14786.3999 10315.4256 10315.4256 10234.8653 35434.8593 16099.4274 96559.5351 25214.6335 17625.4323 10268.2954 8871.2468 18142.7483 8803.0347 32087.3112 9931.6761 25216.2265 7834.0493 11412.067 11869.7949 12362.1113 179004.4413 218272682 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 5629.3811 21426.0547 92762.7236 2551.1 2551.1 384104807 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 16338.1924 31931.8989 15034.9772 65450.3678 10842.0564 24562.4555 4333.8332 11232.4358 15492.7409 20134.9162 209861.3801 47710.5392 30080.0879 41545.9072 35850.1596 35850.1596 21692.3809 25160.7544 24086.1104 17376.551 28077.7346 12112.8105 266787.7775 10484.4181 18322.0678 22316.423 49039.9695 24388.358 19899.6174 7251.754 17233.7828 22483.0242 9117.7934 18163.0489 344317268 xylj Organic Remediation Aromatics BTEX and related aromatics Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5725.0068 110632685 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 17211.2449 4936.8398 4599.2889 4484.0597 12310.3862 4418.1329 14744.8577 45910.26 5442.4841 4383.6839 74719.5687 3758.6476 3758.6476 3489.8744 20970.3491 4133.9869 4442.2579 12145.951 2546.6082 7083.248 8761.3201 34982.7708 12155.6317 5623.5653 7806.8536 2018.8431 3339.3248 6049.6238 3629.3012 306818486 nitro Organic Remediation Others NA Mobiluncus mulieris ATCC 35239 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 4153.0936 253753.2391 4155.3855 6838.2668 2706.9425 4708.9047 5707.7274 5387.1921 8616.5876 12629.4274 12629.4274 2888.1064 8096.6615 8906.4945 4973.8966 6949.1039 9679.2306 3888.1759 2195.4496 19005.7912 5007.2964 4907.3806 2924.6978 4340.3784 330469889 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 18503.8246 125594.5472 5950.7914 8488.8381 8002.4637 4653.5155 19969.3796 24768.5372 40983.6093 31228.8738 22831.4907 369530.1688 8299.7563 119833.5349 61844.205 13890.6969 13890.6969 23978.7541 17930.4467 16185.4311 12097.8431 31839.5037 12406.4854 16605.5241 144302.8334 45794.3894 20708.8345 23124.4618 16391.8263 26899.1205 5171.0083 23087.4062 30222.0482 15635.332 15114.9272 197322318 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 69841.5653 57311.3013 80787.8873 25904.563 9001.1383 34310.9803 87276.011 54068.7399 236032.6133 44662.3971 44168.5892 815162.5401 57272.8586 79150.6813 293453.9563 54782.6771 54782.6771 53966.5549 116129.0004 40559.5489 65188.3583 78991.0335 33494.3551 49209.8044 62757.2353 41169.9703 70705.9746 112088.2152 71299.8987 72172.9583 24889.1176 41474.3476 47653.1589 80770.245 50574.9959 3378445 xylj Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 15372.1219 18523.1682 32551.44 75601.3274 21154.8204 10079.9678 22247.9874 15414.8683 105473.1195 12194.8712 34727.36 203016.9759 26295.0919 17609.022 44453.8929 28971.3614 28971.3614 10657.7924 34564.1095 27696.3896 11796.4312 32102.8217 21836.4537 9680.841 17621.3395 51201.8127 7636.1642 56418.0769 28507.1322 28995.1894 17815.9619 13532.7279 30223.0275 15659.759 13272.7959 115383904 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 11344.0861 7945.2053 5908.6433 9967.5734 6602.6672 4216.3389 8645.721 11947.534 6333.0124 336467.8998 10366.7507 15803.2841 7419.9007 5263.373 5263.373 6229.9541 16354.5064 11825.7511 13484.4314 22898.3976 8738.2002 6922.4349 8301.2815 13568.3204 11622.5096 24256.881 11917.8127 13162.431 8136.871 8493.9413 12507.7604 8113.6486 14891.8716 294982680 amyA Carbon Cycling Carbon degradation Starch Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 15634.9336 150093.5412 7005.793 12350.8884 14095.3691 6990.0582 9636.9931 7051.6054 13602.3377 23409.2743 13960.2002 299301.6484 22712.9358 21527.243 17147.1375 15566.1307 15566.1307 10189.7509 26581.9583 13612.685 19654.9834 27391.935 34807.6241 12668.7916 9640.054 18854.61 13845.986 43970.3451 18867.5735 22850.7609 7215.1227 18625.9219 17894.9928 9952.1126 22510.1365 118590152 ppx Phosphorus Polyphosphate degradation NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5631.7139 12674.007 3044.6475 9384.0147 5506.8729 8950.7397 7735.0634 4617.5517 7418.7093 5006.1763 8366.5897 3368.2135 7659.0676 10974.6049 8638.0205 3792.622 5064.1978 1915.6911 3248.105 3596.3909 2967.4192 84393133 cysI Sulfur Other NA Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 5975.9309 40693.9903 11393.5218 9841.6184 2737.4522 16735.5092 77250.6761 4880.2595 5438.1681 4554.8088 5266.2298 5266.2298 11872.4557 4657.4818 4942.4483 8444.3736 2685.195 3123.0056 6795.1532 2730.9677 9908.5475 5812.0549 6404.2332 4159.3625 3027.1486 3675.527 2688.464 371947994 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 67867.0257 23781.0241 85896.6916 117761.1056 28573.5314 28230.3453 80779.5688 35096.3344 62706.206 194902.6235 130147.9786 601260.9175 30037.9724 60442.1442 31117.0368 44120.1641 44120.1641 41080.8854 47945.5617 33520.5577 30449.4869 46635.4047 59550.6889 34734.946 27519.3285 31656.4429 77955.7974 54032.7283 29231.3686 69586.3722 34907.2262 49501.395 41907.6557 25104.8548 62195.6269 222084400 phn Organic Remediation Herbicides related compound NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8692.8329 22832.094 5499.1074 5150.4454 3893.8516 7848.7089 7054.7157 11887.068 8599.9932 103010.2554 11056.1151 15687.9562 12897.5458 9707.3451 9707.3451 6324.7908 12619.9144 8537.7222 5658.3303 16861.0609 1067387.4591 18058.6648 9314.9896 13104.3194 8426.8637 28599.8959 8938.9718 16354.5293 4669.971 8757.6231 5152.6387 4779.9454 19745.3227 337276624 chitinase Carbon Cycling Carbon degradation Chitin Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 93166.8595 85467.184 11337.735 43953.9557 6390.5475 11357.0248 6018.6949 6865.5089 5282.5284 196678.4681 11373.7017 7589.8612 23580.4933 10625.9292 10625.9292 6689.3561 31914.915 7589.5448 4358.7905 2746.8339 6967.6759 24055.7564 6243.2351 24156.763 20140.661 16120.0704 6136.3292 7499.0166 4354.4811 3075.5027 5166.7696 316907992 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 26981.7228 22441.9653 49590.6909 9815.3581 4590.4223 18875.8735 66005.4383 13101.2625 19288.1308 25191.6066 14052.4076 558897.4636 29964.5359 28715.1873 36786.5016 15223.5397 15223.5397 12877.0981 32071.2727 77854.0686 20261.1301 31375.157 47848.1161 15648.0181 23770.2146 28962.2795 14631.9217 49414.9985 19101.8303 39685.4469 13788.1656 55955.5378 21615.0134 12876.6271 132441.5702 227069587 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 469920.4073 3216.2564 10209.5471 5971.2019 2937.8641 7366.4476 4303.6732 7352.2649 6128.9047 5571.3261 6295.442 2550.6632 10222.6047 6534.6909 10893.5806 2234.0874 2686.7257 2578.7085 8663.8117 340001140 endoglucanase Carbon Cycling Carbon degradation Cellulose Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 23232.7103 20925.3574 3181.1142 5007.9405 2248.4257 4544.537 4904.0198 2900.0589 85075.8297 10725.663 4909.4766 3663.5363 3663.5363 2915.6901 9004.9006 4744.4714 5217.8981 6973.2594 477033.51 3805.041 7942.2164 7886.736 6402.4754 10919.0058 8358.7085 11602.7255 2870.4647 5710.3448 3713.0298 3575.3474 5660.3573 167589245 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8700.428 7455.5657 5519.9232 14061.5033 4625.1425 7674.2813 4422.5461 4536.5967 14320.2714 4497.1626 4497.1626 17211.0922 14353.6099 4182.0382 10384.6739 8656.1944 6609.2221 16077.5454 5216.349 6526.9577 17820.4409 65452.7157 30146.1478 7791.8756 4456.5154 4873.1772 89186.6653 6579.7494 258653258 amyA Carbon Cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 6304.1104 24416.5693 11276.3456 2672.3461 6172.5521 28224.4048 8252.7669 511448.2416 7452.5044 13518.2238 12836.115 46652.2797 46652.2797 13331.9899 7068.5834 9692.7773 7982.2301 12615.0722 20396.5593 14715.3911 4673.1986 30282.2248 14913.7693 18463.2972 25880.5697 13120.1375 7818.3214 7502.7537 8848.4669 300390410 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 35391.5622 11089.624 4858.3744 2372.2483 5045.3069 5048.3159 6696.0227 32176.1305 11447.1966 13348.65 7095.6415 6609.7134 6609.7134 3500.7801 7931.6106 14207.7408 5301.9683 23408.126 6453.9451 2800.7622 12570.134 9129.2007 4648.2053 15242.5601 5622.149 9524.0109 3309.3105 17968.0779 15073.291 4667.3987 8847.0256 291447771 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 5720.0831 15056.1712 83344.662 10981.0144 4711.0336 19988.3051 6686.244 6968.4745 12079.2336 8194.8708 59275.6105 7732.5121 6275.133 12707.0143 4881.6226 4881.6226 10054.6542 28940.6287 8453.1804 6211.7223 2729.0909 5692.7561 11120.8796 4260.3897 16938.3619 6266.4798 2900.8964 5625.5119 6311.7384 5001.1056 16640.22 237886442 ara Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 28081.0373 21104.472 309924.8437 17250.3923 14682.4863 18746.1065 106990.1976 5658.1459 43574.6358 29691.058 125272.6557 9633.5597 10277.8282 18974.1343 22232.2976 22232.2976 6505.4139 45529.9444 7761.6566 4697.5441 25231.272 115692.9221 9166.8649 11336.0889 22036.8412 18236.0885 15528.6776 16390.4224 4648.5487 4909.4876 8240.113 6158.3739 22449905 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 10276.5265 23301.2379 7226.5521 24317.5197 2444.5842 17179.9486 2886.7958 5439.5921 12781.4085 73611.7811 5004.0157 7992.9983 14677.0097 4336.1147 4336.1147 4406.171 11162.0086 7407.5306 4589.5723 9197.1053 6213.4981 12604.3536 6375.0286 5007.5454 3709.2874 12539.189 8098.2413 11220.2383 4046.1264 9750.954 5131.6287 8504.4704 11528.9699 387927299 Sir Sulfur sulfite reduction NA Bacillus methanolicus PB1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 12715.7146 9471.6954 15781.4992 12290.7854 16540.0674 8488.8904 70865.1798 6261.6953 9707.0518 7381.3509 7381.3509 7901.6393 4149.5513 8915.9676 4679.9267 3135.4323 7278.2055 7242.1973 3903.8972 19660.9576 4875.8033 8794.9561 2499.4802 7874.8249 5696.4157 4738.9245 6350.8063 171060442 fccab Sulfur Sulfide Oxidation NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 87508.5342 63627.7073 71140.4224 55145.0435 39281.2525 340313.718 105830.7139 49295.2061 63620.0013 64700.1578 167595.0879 1428397.8469 206963.2686 144104.8477 88107.531 64331.6833 64331.6833 175036.7342 99879.8824 78748.6621 74199.1838 89841.8528 270833.9549 55393.1682 62098.7493 58272.8947 138706.1807 153795.1181 201363.8509 121511.8194 46739.553 79521.0359 89369.726 173684.0725 227147.4718 378822357 terc Metal Homeostasis Tellurium Detoxification Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 57553.8028 43044.8415 24468.4383 14385.0161 15882.1595 90249.0702 44790.7832 13412.7158 110935.0524 103543.8338 35081.6689 626164.7963 31164.6292 61632.7589 37890.7384 38443.1255 38443.1255 16708.2883 54754.8367 35300.0677 52035.1103 39925.6706 17909.0553 16177.7507 29812.6236 86495.4619 36782.3144 82441.4208 66219.8229 45635.961 17720.7681 23678.5885 51772.6203 21946.3902 25503.6385 334696529 merb Metal Homeostasis Mercury Detoxification Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 12593.5008 31313.8218 16896.5447 9820.5662 3032.948 26133.7744 7492.4676 5300.6066 8206.3194 6629.8277 200465.675 59894.0234 13273.1199 29347.3548 27032.0515 27032.0515 3903.7454 13316.9603 21150.09 9836.2112 5815.5259 5112.9024 5067.8697 11583.2992 15363.4473 3916.5333 16721.2324 21626.8515 22666.7067 4980.2266 7748.4026 11472.6755 2959.3549 6145.0448 214044780 pcag Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8023.5013 12428.9777 8662.3747 4987.1724 20854.6347 6255.5122 8841.6947 9787.7373 18498.2148 6631.6031 176016.1841 17280.0424 11802.1881 4686.8865 7727.6778 7727.6778 5749.405 21517.8699 13026.3501 12006.8532 14336.7456 17038.4878 5096.9638 6466.7438 12271.6067 5375.6009 32785.2689 11140.2687 15831.367 6495.0363 8667.834 8517.3802 6719.2497 17318.2342 315442552 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 116610.6034 6220.0941 5187.8136 16162.1641 15295.3765 14259.4222 8446.7468 16220.4962 12136.5197 8624.5984 9148.0061 132409.8557 5654.8984 18043.9058 10129.536 9077.4913 9077.4913 5560.463 16088.5156 8092.3518 7742.4575 19281.4308 9256.8953 5290.5944 12058.0731 58704.1996 24702.425 16519.9259 13857.9118 6420.5078 7587.746 61075.0134 9020.3184 12169.7789 126707779 ben_bcla virulence NA NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 7471.7934 15376.1817 10461.6383 12355.254 5374.8712 4875.4286 5794.8208 6175.242 19469.6093 5114.1924 157986.1102 11534.0238 7145.5809 7500.8359 7067.519 7067.519 4044.3074 9209.6128 5563.4999 8838.4638 5389.8392 7957.9174 2320.9532 5251.2647 7669.2227 11040.6195 34198.8092 12085.7524 2523.9621 4076.7857 4880.9924 2953.3338 9005.5452 262014340 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthrobotrys oligospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia; 27236.3698 9232.5647 68809.4384 175706.6236 57083.962 7626.4443 61670.2482 19267.11 118645.2522 146376.5469 52041.619 1458256.4608 57927.4779 105153.013 83411.4701 153944.9731 153944.9731 397854.7199 79333.682 128503.8044 25157.2304 146385.207 37694.4042 11438.3127 59946.9786 192763.6911 25985.7398 122008.9611 179036.9128 192874.057 13212.1408 54231.6368 101862.3711 17045.5154 78125.0124 388243314 amyA Carbon Cycling Carbon degradation Starch Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 365630.2336 10415.9107 25937.4828 10561.408 6400.8886 9221.2363 24919.3205 20865.4975 20401.3111 139825.8914 43412.9963 124088.0032 19117.3444 41467.1128 18630.0199 18219.4166 18219.4166 12915.6016 41390.5763 6572.5001 21757.2653 37700.0487 31558.82 7612.5722 12058.514 11803.3117 66662.2886 41137.7938 19722.2423 25564.1697 39505.7549 15754.9254 56236.7174 18723.7214 45275.9296 381387385 cysJ Sulfur Reduction NA Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 7578.6575 7754.1391 7642.9358 11758.74 3108.6586 4678.572 16789.7073 21063.7918 5257.2516 11292.8325 11292.8325 5311.8364 5756.4295 6112.799 20841.7896 305661.752 15000.5835 8985.0635 4539.6327 5917.4852 8835.0291 359732642 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 6203.7769 35894.7155 6596.6772 20055.3256 8265.2127 4403.1508 11315.408 5767.5871 5147.4999 99105.079 6149.8454 5607.9604 9313.6663 6304.1916 6304.1916 4372.6107 13683.6721 5652.8224 5994.272 4596.6966 4440.2662 3294.3995 4066.1831 16433.4671 127787.0056 12969.2534 7160.2798 13570.813 4058.3746 3804.8168 4886.3891 2337.0972 5111.3214 163797967 dmdA Sulfur DMSP degradation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7296.0412 5365.5486 10019.7024 16109.6747 3420.9733 3887.1223 3304.7794 4748.9007 6790.8188 4190.4019 130609.3483 7481.2505 8901.3692 11434.642 6212.6677 6212.6677 3022.2016 10528.7638 10120.9324 8543.0587 11107.8629 5954.6033 4609.8669 4049.818 8298.5991 4587.3794 15606.5698 26054.9819 16379.0699 18196.6167 9508.5302 4858.6632 4339.1995 23562.8354 219921387 mer Metal Homeostasis Mercury Detoxification Laminaria digitata superkingdom:Eukaryota;phylum:Phaeophyceae;order:Laminariales;family:Laminariaceae;genus:Laminaria; 29045.736 30065.3016 50389.7123 24842.2444 32233.806 5107.2854 31652.7494 52231.7272 14394.7802 18420.1632 30089.5594 21406.4454 1143725.7793 38929.7427 34508.0743 21125.188 17626.3578 17626.3578 25782.3861 35450.7159 26742.3816 48501.0531 32317.8124 49259.03 43623.571 20991.1617 42679.3864 30641.654 55642.8275 37992.0057 36131.6334 18901.2209 22629.3992 23766.0928 22311.883 48141.7935 302443005 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 22411.6647 79313.0655 9294.1433 10249.1162 16528.8329 23977.2708 12688.9252 18179.6205 19442.7136 405649.3732 13177.6663 17717.8772 14686.0402 7919.956 7919.956 4772.7312 45817.255 9737.462 22941.095 25355.3469 10880.7597 8915.8855 18010.4421 35719.0417 18094.9235 30100.9602 10858.0035 20502.594 9563.2551 18382.2693 13695.5052 8870.6205 10671.0277 343927596 nirb Nitrogen Assimilatory N reduction NA Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 27046.568 100002.2314 8348.5602 6003.6823 10258.3544 11218.6364 6576.2814 6587.9767 12298.5724 23881.8491 28111.9444 175624.6235 12214.8475 14947.5478 23518.7276 8205.4495 8205.4495 15734.6573 29647.5187 18485.6646 39834.1596 41066.3474 10131.5749 14502.1453 12336.7898 18814.49 19747.4652 53779.2125 43147.6052 28243.1351 13840.4632 7853.9432 209773.1361 8364.7556 13574.5632 256420882 cellobiase Carbon Cycling Carbon degradation Cellulose Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 11199.8757 7787.4251 16288.2816 21160.7063 9203.4723 8469.0402 6871.8903 10048.6504 9714.1407 5019.6754 300511.8554 18853.8583 12661.8861 7813.4299 7514.2217 7514.2217 9479.7662 19081.6915 14293.379 13421.9497 20233.9318 21930.3401 7623.2463 8174.3245 18326.1693 5863.7834 26952.972 17055.6814 17567.2077 7018.4979 8470.0396 9229.7259 6602.9187 23753.0109 325261634 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6824.0349 287195.6128 7191.2071 21049.6662 3607.4193 13257.4163 14576.5005 21722.1056 270852.4437 9199.6209 7617.7151 6038.3332 8155.2324 8155.2324 5781.5613 12786.2992 11807.4974 11210.2555 17052.3852 61928.9259 4478.9533 5569.5679 11066.8133 7540.048 21476.1113 10736.7827 12457.4833 5317.6799 11854.0909 10532.9175 5041.8423 12009.5148 184204799 mer Metal Homeostasis Mercury Detoxification bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 13640.0253 62337.5846 4645.5583 2347.1196 3062.6368 81731.8981 4116.4931 2244.6863 2244.6863 13340.879 5803.2345 4027.3525 20233.9718 3937.2106 3184.2756 11269.792 7373.3969 6672.2433 3713.3223 5140.311 3760.4194 2643.8113 5724.3257 163758822 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 48419.9688 19443.2215 29514.6764 251314.9009 55943.9995 9433.2762 65221.0703 175918.5224 70156.0859 27979.3249 86599.9839 29440.5733 818351.3788 40772.9306 48434.1698 36771.6946 27578.7078 27578.7078 22728.6924 51407.1514 90623.3945 51099.8832 48527.1379 56550.008 20578.0287 20271.8433 49611.1146 23866.8682 71024.2564 37225.5091 71182.1963 39874.3023 28801.9141 62243.7989 25855.4447 52734.8543 192764452 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24287.8591 389408.0358 49744.3507 136041.1656 7952.7389 9954.2682 16574.9418 37940.2095 30648.0485 30705.2344 37596.2537 17248.7847 724752.2678 25766.7339 82203.9338 61637.7013 61637.7013 21084.5051 63056.8358 19820.9239 183714.1153 72863.3531 25464.0231 35663.4777 30425.0965 37004.2889 26847.4819 53859.7921 81792.8814 36174.0772 12840.9824 67153.5685 49212.6467 18378.0689 132524.7763 210630336 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 19480.1466 14630.773 36225.5213 24039.0527 13353.3305 14687.3336 17142.1142 17344.9238 18296.4337 20584.845 11365.3457 428421.778 28811.3065 26237.4755 13444.1123 13616.1193 13616.1193 11956.4223 22654.8096 15321.4785 18046.9584 20936.7807 18676.076 18502.0805 10114.9664 21508.3811 7428.1257 34899.2643 19273.9127 18793.0848 11390.0372 12842.1785 14934.6237 9366.4367 53001.8125 114762874 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 56173.9443 8238.6794 16378.0091 17668.3401 39717.1241 6607.9738 6469.3815 5760.5481 14202.4914 16636.5315 170332.6868 11225.4304 22215.2472 15761.5479 33871.0669 33871.0669 12744.5335 22641.5577 9223.8319 18786.6589 14924.2821 42741.0307 8347.8737 8701.7255 19016.2931 9998.2527 42074.4959 7459.5453 45651.3796 6387.4778 11061.8917 12863.9029 8427.963 14707.8232 282163034 nifh Nitrogen Nitrogen fixation NA Methanocella paludicola SANAE superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 4680.1597 5702.9636 11711.659 3223.4925 2512.0909 5060.9514 3880.3899 4301.8031 9106.6301 4493.6296 4493.6296 7585.3025 5552.7351 4636.6599 3126.5166 7421.9557 3395.7598 2844.409 2874.8145 380880436 PRK Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 12092.9068 7336.1595 7792.3487 5256.9158 3879.6777 2222.7311 11320.7318 8510.7133 3152.5884 139459.0208 84120.8039 7340.3883 13436.7356 4647.7691 4647.7691 5132.8617 13874.8905 8805.3534 19511.5822 16973.7878 9600.8711 8493.7631 9429.5469 11784.8906 3867.4887 19468.4375 5125.664 11844.2511 5560.1678 4963.0268 6848.0537 5370.287 17024.2039 394311147 linb Organic Remediation Pesticides related compound NA Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 18320.0328 26723.1009 9709.1119 17843.3825 14026.5793 7138.9784 26484.7498 6263.3603 15414.9773 13567.7603 16597.9694 205352.0357 33363.3943 20687.3124 54084.05 14195.7382 14195.7382 19517.7065 30733.6588 8587.3692 18424.8012 20088.1975 69761.6004 7929.0573 10167.768 25823.2701 42988.3625 80909.3135 182006.6408 18090.1193 6628.4538 28826.8304 21989.0846 8830.2783 28644.9511 298252100 terc Metal Homeostasis Tellurium Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 35150.9916 5227.761 8580.854 18385.3263 7437.7999 36772.73 14925.5645 13090.5837 15519.398 7899.3621 215900.3747 12544.936 11606.2235 12232.312 7889.7303 7889.7303 14444.7352 19060.995 17664.5408 23869.3282 20729.154 43889.6334 12418.9136 11627.6309 20678.1519 9457.8139 34354.3301 10729.5837 19674.2146 14079.2867 19907.2381 18780.4267 8250.4317 51229.0986 91788852 poba Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7107.03 32943.0706 16011.6648 6229.801 5807.7591 6502.835 8804.7801 8067.7064 4414.2079 128440.6544 7883.4269 8648.3645 3069.7046 3069.7046 6673.9307 12854.8992 11904.8195 13251.3267 10505.0461 13219.7345 4028.967 4544.1832 13266.5875 4553.1215 16447.3358 9412.1889 12480.0467 4367.9402 6958.0321 7666.4777 6781.889 33886.7569 119872734 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 5003.0372 2034.5824 2685.9818 2945.2945 6758.4339 4785.5939 6468.631 2986.5512 2986.5512 2579.0332 6570.388 4110.5997 3840.1593 7062.0608 3886.1062 17758.4042 3098.2635 305856335 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 15007.9783 14619.2996 26298.5332 8208.3475 9895.5833 17717.9037 12438.2761 17115.6817 15846.5487 12418.035 2529776.1937 194008.9474 16909.4657 13044.1689 21303.964 21303.964 5515.5406 25843.7314 16708.87 15098.6348 480511.144 16740.0586 15821.744 14471.483 21263.9631 11697.5238 50198.1806 10866.616 24046.538 218704.0441 11580.2278 24152.0971 49407.1119 13560.7396 55740969 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4189.0185 16193.9001 14228.5269 10263.9715 8385.2566 5620.069 3483.3496 89503.5131 5047.9921 4034.4679 3192.2185 7876.8738 6184.5166 5468.1978 6994.8251 5942.1759 3621.4211 2877.2104 6794.0122 6979.9494 11233.6394 5954.2757 7284.3918 3490.1094 3939.0534 5809.8029 3609.343 5550.6674 118173735 urec Nitrogen Ammonification NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8429.7267 255000.443 7638.7514 3763.9274 5522.0568 2781.1682 5060.0562 8365.2468 3831.1129 100863.9599 8967.2079 8045.231 5379.5882 14151.637 14151.637 6280.6418 12850.5887 7618.2993 11153.7672 34829.9366 15546.261 3252.0577 5718.6106 10442.0088 3774.0459 20920.0398 11926.1289 16451.2521 4168.2565 6040.1705 5434.6001 3653.6375 8371.0994 363413209 nosz Nitrogen Denitrification NA Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4553.0441 4441.7781 2623.9141 6681.3914 3868.5612 4936.8585 2408.3638 144432.998 18997.3345 6316.0758 2227.4267 2227.4267 5883.4918 4078.5233 2429.6241 2724.1532 5938.7643 2672.2819 4031.4861 6302.9278 2386.7369 3546.529 4116.4983 171318562 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9514.8158 9841.0125 6979.3687 19113.0556 9238.201 9124.6592 8065.7187 2134.996 6329.3775 12901.0521 4824.8026 164443.3797 12918.6058 9047.3762 12237.448 8779.7988 8779.7988 9834.3799 15541.789 5877.248 5963.2453 9895.4634 7351.2063 3366.2149 7806.8476 15436.1311 3276.9254 14339.6171 9367.0453 11208.156 3648.5345 7228.4843 9618.1139 4347.7817 9565.807 381209266 amyA Carbon Cycling Carbon degradation Starch Lentibacillus sp. Grbi superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lentibacillus; 29081.853 47074.6506 23582.4307 23897.2501 7150.34 9621.9313 32782.868 11372.404 22817.2057 12122.588 14728.9752 330156.3611 17081.0715 18040.6132 18043.6036 13397.3967 13397.3967 9875.6285 27555.6617 143032.3961 25142.4478 24589.8073 20597.1901 34401.7893 12469.3527 19153.6911 20440.6248 35585.7341 10302.608 22818.586 28704.0654 55524.9539 15087.7305 9676.5262 41319.001 37956598 endochitinase Carbon Cycling Carbon degradation Chitin Nomuraea rileyi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Nomuraea; 88103.4365 43440.1125 16077.9762 145399.9088 63265.0736 69444.1201 25504.0359 592820.9925 24878.7556 38207.4429 54781.1218 31592.253 635447.8 56928.9975 41990.8117 30792.4566 37524.1217 37524.1217 44790.428 74499.5912 33281.5655 33540.6531 39824.482 53460.5606 9046.0824 36621.2387 297204.6284 57946.8344 65618.8048 74131.0703 39183.422 12114.7322 25329.3912 35519.3133 13555.1848 49627.5091 158523704 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3778.597 4239.6884 3332.6704 2197.996 2365.0124 156740540 cellobiase Carbon Cycling Carbon degradation Cellulose Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 90871.0501 85787.3582 19748.1256 39375.1355 16344.6911 16059.0376 19068.8993 7261.6865 16056.2487 20011.8196 11587.8412 663180.0578 23640.1839 24734.418 40944.2644 23178.9223 23178.9223 10845.2281 32958.8116 17083.3766 13516.9675 21643.9026 24423.7705 9625.3081 10449.9611 26667.4737 16916.0161 120599.1724 15786.0458 24137.7628 30008.2819 22450.8267 29796.7773 10008.8506 31254.0672 148271944 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 98717.4682 6304.5119 12016.7974 6310.0624 6532.0736 4759.9184 9654.3686 10987.9943 8270.9209 175865.803 8882.1887 8389.5436 7024.473 5093.8454 5093.8454 7149.2588 27901.9696 11770.0109 8433.7841 15367.5762 18948.1449 6121.2712 5777.2389 15248.6746 8433.6298 31962.2917 66959.357 14371.8937 27371.8926 10396.4118 9359.4712 6892.0468 19036.3257 222452154 alkk Organic Remediation Others NA Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 68130.9272 11771.4643 4847.0985 2041.3428 6066.1966 5298.9655 5616.2436 6871.9064 6335.6086 135841.1152 6687.7687 6600.5803 6798.8016 10101.2034 10101.2034 6840.1309 23997.4118 7915.4897 16994.7427 8813.7694 8889.7786 3767.0277 7842.6227 13241.6927 7182.8377 75754.5367 11688.4672 11229.7384 5530.6368 42964.8916 10663.228 3473.7073 18758.8678 353194004 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4513.4512 23233.8125 11778.8194 7117.1022 2680.5784 4442.901 3260.3531 73073.1116 4087.8028 8807.429 7739.9085 27248.1138 10309.2214 9015.7775 2177.7994 3426.0436 2481.4534 1030506.8761 109457038 pcag Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 12736.6673 7973.0371 118474.4176 17397.871 18628.9286 12857.4183 196028.1148 6176.4618 22255.9455 18592.4347 12536.6527 566989.4982 18032.1581 43509.7874 27957.9384 29851.7655 29851.7655 14923.6462 29867.4439 20422.642 31258.3105 19083.4492 12581.9651 11545.5012 18397.5096 16028.6233 21495.0689 52004.8093 13400.9616 21096.6259 13519.4929 13588.8808 17008.0191 10425.012 19869.0507 66351659 oxdb Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 78489.8384 60300.4547 204323.2628 20210.5984 26008.5757 20673.7706 43205.487 23649.6177 62457.5464 60920.8829 51330.3744 1752972.8993 37549.4884 41433.4241 271275.2511 55710.0178 55710.0178 48027.6431 68155.1858 33043.0751 94465.0513 81412.2715 46590.0996 56400.9749 39384.542 88928.4707 64718.2062 218885.9961 55272.3653 64885.2825 22966.9471 52674.4406 46522.0411 48208.447 66418.0434 225201574 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 6793.6398 5848.6541 6539.7123 22943.5005 4096.9811 3005.7978 7722.6865 9923.0459 5774.2758 176836.183 10245.4005 8542.3873 4623.9419 4250.4032 4250.4032 5305.331 16143.0844 10586.0793 9450.2132 10453.7329 12926.9648 5850.6784 5020.6416 14140.8636 4637.6709 18050.5949 10345.3193 13537.7369 4509.0541 7005.2072 8785.7627 4641.4744 11806.7557 120591561 terc Metal Homeostasis Tellurium Detoxification Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 66212.7737 13424.5993 26442.2089 30989.7053 26505.8723 47144.9837 57567.6481 52719.851 15281.7749 18912.6179 26871.9039 25398.4725 638619.303 29921.111 28838.3566 24309.4445 14129.7789 14129.7789 18946.1444 40672.4747 23162.3594 143499.239 32385.4172 106652.0542 14656.1683 14188.6929 46301.332 15429.1706 59226.9579 23572.1731 37671.7007 30385.1059 16691.0966 28582.4842 16569.4492 55082.9909 83316708 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4382.2969 2966.7106 2828.4072 56608.5932 4883.4037 4806.6838 2656.7183 2656.7183 3189.1109 9275.978 4643.2971 4554.6219 5464.8386 4479.7928 9448.3384 6612.2302 5979.6626 19887.6338 7449.4448 3349.4124 5814.045 12176.9816 2321.599 4500.7584 381360919 urec Nitrogen Ammonification NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9310.9383 15112.2526 46337.7696 11219.5935 7015.0675 50783.766 2993.41 8917.0991 8158.1498 13335.6427 408483.6149 16404.3473 16350.4095 29946.4907 18679.8076 18679.8076 22385.4347 39550.5104 11506.6373 10682.3508 8156.6007 10465.4214 4478.1748 10512.8917 28723.3157 33226.3562 67585.875 33974.0032 37465.6098 7780.235 15846.8641 13630.2475 7664.8828 11494.3323 316981094 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 6045.889 7275.6232 17558.5597 11550.6234 4187.1656 9063.3444 4791.948 5814.7692 5100.3094 6270.3148 10125.7023 6148.8014 6148.8014 3871.0121 5174.6533 4433.7252 4445.9438 3416.8584 9335.527 2453.2736 9231.9939 7181.8238 10510.1961 4121.7837 5241.4528 4087.0897 372486661 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5938.2718 21546.1232 5122.4463 2310.203 4020.6109 3044.4317 3660.1356 6444.2192 11575.6849 119404.4967 4682.9812 5993.4534 16364.4079 9156.7355 9156.7355 4267.8255 6482.7814 5999.5772 3855.0315 5728.4435 9230.5361 2171.6722 3746.7145 9364.967 2077.8275 8706.5846 5613.6676 9056.2257 3446.2275 3753.5187 5640.0225 2672.705 4579.6523 307770297 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4598.1731 4566.0991 4183.9461 10315.0648 5015.6415 62512.2172 6270.5539 3054.0828 3054.0828 7555.1058 33192.5186 21717.0296 10056.5088 78098.2365 6367.3265 5593.9616 6468.5111 15608.8993 20464.6264 9967.3177 10028.8716 3377.0457 5919.2557 32795.2418 18997.3745 13423949 cmci Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 51909.3577 27278.7764 13395.1284 33506.7226 25094.1471 51106.6503 12805.0117 68896.9241 212725.2288 51914.7917 1356173.3558 77354.6453 138017.0128 276951.5837 77503.976 77503.976 204367.9725 58372.6382 22084.0371 27202.4094 379691.6996 20722.7182 209026.069 37353.8526 50787.9805 52570.0925 173997.0609 42160.27 128325.5073 31989.8548 50253.5037 172510.2886 13950.7594 42158.2147 353467245 phdj Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. DBT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 266367.0281 35877.1445 105856.3178 143490.9212 793378.5717 252717.0676 126086.7611 417330.617 112910.0624 208723.8322 736908.4861 206961.3478 5428179.6231 277763.257 419534.3125 518061.6087 376690.5457 376690.5457 135537.4815 588012.7832 146664.07 263187.1311 375227.1531 124452.4579 145428.4895 148627.4482 505220.9763 193225.3709 353969.3992 288103.7964 305785.7937 92772.5968 129894.7486 184511.1935 125475.6568 399232.9181 194345587 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 19429.1662 16692.5573 56975.0295 7034.6628 3921.2368 6995.4722 19920.7393 7543.8769 27026.1307 36921.2392 227298.5209 9611.5755 16526.1976 17651.3544 11844.6563 11844.6563 5786.4303 16803.8045 7806.0884 6023.2183 8110.9694 8175.6726 5716.7203 12085.8189 20255.2168 12526.5304 28257.51 21644.6252 19838.4282 6772.1303 7722.7354 8945.0359 7922.0315 7761.4054 46911936 PRK Carbon Cycling Carbon fixation Calvin cycle Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 6915.0459 3831.7891 9823.0272 16701.8958 8906.4214 90005.0721 4983.8157 4730.7303 5007.5697 7136.5423 5458.5 6807.8557 9402.7341 5047.7865 3177.2722 3036.628 8884.3026 4740.4383 6949.8306 7734.7488 3423.4651 8789.9023 5042.2882 3478.4935 9050.3317 86609427 mer Metal Homeostasis Mercury Detoxification Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 52054.3161 8702.6042 107765.0187 10969.3883 6707.1152 5662.7118 9133.0219 4641.3891 183595.8516 7661.2615 16551.0001 29559.7878 11148.4242 11148.4242 7191.34 10351.5352 6518.3055 13335.4787 10339.3488 8508.8698 22126.1591 3117.0196 39667.1679 10908.8693 12110.5916 4855.5912 6669.7146 7493.2689 3205.923 6260.7943 340772016 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5101.9659 40966.0797 7710.6203 56278.5675 24648.8953 9436.1384 4344.5319 7632.5068 5281.2889 334364.5598 9519.0617 14434.1369 35896.4626 20107.2048 20107.2048 3101.5289 6940.43 7982.5161 6127.6039 6004.8197 3215.8607 5922.9357 18951.6107 3816.8093 15966.1062 14629.7105 15254.1776 7004.6604 7486.0721 6732.2255 1962.6275 154247873 aoxb Metal Homeostasis Arsenic Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9998.478 6949.035 14786.0069 17669.9752 2488.0976 5792.5161 3756.7359 62660.8251 4149.52 4487.0884 6891.3847 8623.4221 8623.4221 10376.7713 4497.8088 5523.6231 5061.9244 3441.6913 7445.3586 4079.6137 24866.728 11083.4926 5738.0259 3744.3589 5800.3594 5380.9521 388556644 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 5932.4445 16435.1392 6376.3661 9909.3894 7412.6767 9908.2506 6280.6334 104193.2888 60477.6871 6609.7422 2790.9128 2790.9128 5131.3162 17423.8751 7948.5333 9370.5504 12772.9088 5415.2004 3041.3275 5216.5555 12405.8273 11157.0616 34571.7097 10288.562 102519.1059 3575.0928 7228.4009 16636.4099 4274.6714 8694.0114 355468520 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18597.6916 7787.6985 16044.3506 13226.4221 5732.2505 15287.1456 16191.3337 13087.2054 12217.7255 17804.6046 8258.5531 239402.2507 11454.3556 12567.7453 46551.0882 9764.2361 9764.2361 10143.5439 23231.4125 17299.9495 14140.6459 19675.2975 24900.8187 7914.719 9987.7764 18640.6276 18694.998 47712.724 18713.3959 19814.8497 12293.1586 13032.1656 13012.2789 13579.9757 25164.7895 305860676 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 10560.7832 3992.4468 31695.8044 10026.1844 5549.8252 24521.1793 4951.0414 2615.0429 121838.0367 5039.1446 6125.1044 14428.5007 6838.473 6838.473 3092.7269 14641.8037 8860.6491 6139.8465 8726.0771 5289.3713 15205.7532 2693.7242 17230.838 8773.5674 17705.4506 16401.3406 4418.1423 7162.9716 2541.3482 404441825 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 8727.3286 6172.7945 3735.4209 3580.6943 6083.2069 6315.8538 4835.6843 118955.9369 7895.7437 19747.2816 4398.9025 4398.9025 5047.2189 15688.1228 8193.5977 5530.0758 9126.3545 6634.4455 4177.4682 3736.2885 10220.969 5258.4586 13602.4723 5417.7068 10629.9368 4771.6077 4572.2536 6212.4312 6606.1001 11285.4191 109290313 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 29053.8549 11613.1792 19554.6487 6603.1886 6869.087 7908.4596 3614.5368 9891.8958 37603.511 19931.9267 225305.4898 197303.371 10216.6588 53002.535 6832.1608 6832.1608 15538.8133 29318.4075 9107.9776 9467.176 10671.0356 10233.9365 7906.652 13421.1117 18564.2246 12805.8794 21093.3426 12596.1168 21935.8638 7443.8383 10917.3496 13303.2742 34727.0696 14568.332 367467575 linb Organic Remediation Pesticides related compound NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 251721.2271 54842.5254 223747.5287 309666.4447 409124.3408 227989.5151 191529.1285 170819.2193 243392.747 151386.3463 177048.6248 178601.96 5029460.2353 163038.5525 244491.5781 212558.9629 232251.5377 232251.5377 292040.2313 197675.233 97867.3296 239901.8735 278544.6524 183605.271 79902.8576 95330.3283 189218.3912 86952.2052 379476.5978 209402.6211 205272.2233 124468.3349 131187.9396 157057.5569 74264.1652 200588.6416 77378433 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8456.1512 22368.4044 28425.6288 38614.7465 26295.7465 42678.9518 2883.8546 11660.4498 10270.1657 10070.8213 239866.3496 12066.7191 19836.4963 31502.356 13093.8771 13093.8771 8739.2863 22059.7045 13988.9916 31919.1677 9654.85 12175.0116 5024.6163 7539.2839 30045.1947 8623.6075 34807.0788 29546.1762 26433.8028 10462.1166 11636.0033 9530.2854 7724.7026 14945.1842 171192961 PRI Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 31767.2733 22974.3822 19253.7093 46911.6994 30231.5335 16190.7509 52793.1878 23362.1722 14695.3188 24436.4504 30243.9017 11723.8904 653480.7129 32032.6403 28888.211 23257.8704 13503.3712 13503.3712 15901.5581 47133.1576 33541.3407 25838.286 32429.7118 47809.4446 14274.8823 19033.8188 34236.4557 54280.9206 53393.8001 35567.8447 27468.0285 18518.9043 25115.6012 15803.6223 15097.0014 41615.9107 121698955 chnb Organic Remediation Other Hydrocarbons NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8020.9578 26074.4836 12125.9985 7220.647 17633.6625 5078.4411 3149.3211 4556.8367 8061.5112 13728.0015 2707.5343 364285.9989 11769.3008 10710.6264 5766.3696 6508.6561 6508.6561 7575.9249 31615.9237 14743.4259 16823.7441 18435.8129 22461.7852 6200.7368 13041.6452 17735.9475 10655.4786 36039.5032 8404.4046 23534.998 8694.3894 11118.6145 12679.7632 9594.9493 15509.311 92908605 endochitinase Carbon Cycling Carbon degradation Chitin Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 23208.9415 6808.0172 18945.9288 54087.9195 26806.4718 12748.0481 17571.8723 6578.2278 17176.5831 17954.3798 21361.8366 388633.8153 169715.7063 23149.8252 54329.2817 20671.3049 20671.3049 10282.2586 29927.3505 19733.8694 87465.5351 14971.5238 21168.5932 8086.0755 19409.1052 35264.3883 8761.564 34782.2283 159052.4975 35679.5563 8158.0324 11785.2199 15612.5865 11743.6744 15674.8983 390946596 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 14611.5801 2619.1884 2842.7826 4803.422 11579.6028 3699.0937 59493.1046 4887.0688 7503.2347 3592.7587 3592.7587 3047.7625 12821.9072 6522.4768 10095.4686 6516.1799 10751.7083 4467.458 3666.0245 5608.2089 4229.0575 12909.2688 35337.3545 7525.7603 3517.4291 7612.6882 4610.8327 7562.9138 9094.2584 319927907 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 79197.538 16978.2139 45914.6288 99749.7517 12085.9035 21690.6134 45538.4765 35170.4927 79593.6247 34341.5217 45812.3045 1225038.5171 50067.2131 88260.8734 220019.4551 54553.7383 54553.7383 30569.5786 68757.2565 43700.2248 76174.3289 149859.2556 86598.5672 22416.756 96058.7686 80608.6776 35733.6171 123205.5578 108283.6542 96165.4316 30081.8357 53474.4486 65927.7917 25972.5145 46113.6778 315119476 nitro Organic Remediation Others NA Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 9500.6533 30455.9469 8502.9569 10382.5671 4564.5813 4606.7698 4455.4501 8331.4774 10082.2154 4362.3681 201241.9193 8971.3293 8163.9829 6989.6574 3093.9326 3093.9326 5763.7993 15777.1304 8739.3879 18010.4145 24799.9399 18387.0811 5272.6472 4846.9204 11450.6258 4839.1379 17896.8212 8091.2349 14282.0366 6138.9384 7704.176 6968.9393 7756.7829 12905.3699 148850486 chna Organic Remediation Other Hydrocarbons NA Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 14644.1916 4788.5365 3076.3467 41302.5364 4077.2854 4918.9232 8850.4484 4140.3704 153775.8641 8704.5416 19558.7605 3168.0078 3168.0078 4540.5506 12236.5523 6430.2948 13043.0592 14647.4316 12934.7597 3648.7416 12879.7208 11132.8945 3995.6553 14672.9589 14178.2944 9635.2932 5602.8451 5434.4668 5160.1329 3414.946 14961.3329 312195127 xylg Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 83225.1266 19355.1949 6366.5592 15405.3903 16859.4228 32648.2027 8820.3947 4236.5074 16186.4055 68291.7152 59248.714 20682.0627 22237.2272 1993.4143 1993.4143 3988.0047 11195.5761 4721.3259 20051.522 25160.2608 7976.3162 17512.684 17646.8777 10603.4561 32613.557 15240.5754 13580.0462 7613.2508 10247.3945 22890.3588 14715.6008 12858.7012 169175749 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 74624.1821 5180.8737 29435.9854 7706.7449 6305.0145 12557.4228 72931.1033 84376.4927 10499.8733 8799.079 27712.532 27872.5384 27872.5384 12191.1608 20931.5246 6435.9677 11998.0678 7018.2611 2238.322 18699.8142 9636.2255 3200.5419 15271.9644 21188.743 30517.08 6048.1738 16948.6097 13156.5168 9185.1923 8446.5938 91802028 soxY Sulfur Sulfur Oxidation NA Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 1043841.9117 257931.346 953187.4638 747321.5535 632685.796 1594312.4633 618007.7774 701387.0151 844435.3173 580796.6008 736704.2099 410828.348 16788925.7675 819400.585 760300.8318 1883800.629 594192.9076 594192.9076 501016.5556 656437.2429 480512.8026 834814.6235 846907.9324 1084059.1947 409965.6087 414593.0387 764203.5659 325299.2439 1149735.4112 847731.4106 837607.2199 452385.8605 383124.9955 426626.7164 397558.0591 1252350.6359 88814027 terc Metal Homeostasis Tellurium Detoxification marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 42590.0407 154275480 phospholipase_B_fungi virulence degradation NA Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 10746.9806 6892.7879 9234.3577 7689.7105 24183.0839 6464.2192 9014.0358 12273.2823 6769.1693 274964.0353 13691.4658 12288.7793 7825.3758 5058.1863 5058.1863 8558.0674 10966.1737 11927.3556 12736.3078 14626.4784 15109.1746 6805.1931 4851.5191 12584.3907 4930.97 20912.7542 4671.9966 15451.3825 6931.4792 8275.5677 9129.4307 6039.2157 16715.099 52005547 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 15685.6103 40929.1371 9218.4681 12161.3146 15844.8398 10336.2462 8512.7387 14487.5105 22357.4126 7709.5395 192538.1995 22453.7416 16757.3929 7962.6223 8559.4257 8559.4257 8050.4905 16386.7711 10079.1754 20542.5587 14164.3601 14272.0419 8967.9166 9694.7195 16672.8687 7414.4996 25682.1387 17976.9075 25057.7043 10868.0674 13095.7358 15419.497 6857.6546 22304.7089 68510348 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31564.5183 774825.6267 104266.0318 49704.6516 34154.1656 37715.0163 93066.1722 32520.73 29160.082 29226.35 33294.9418 443408.83 88081.1774 161275.2758 36332.0985 36533.3732 36533.3732 14162.7247 51446.6351 23665.3529 624800.1897 200115.9711 25751.1065 38139.0736 124347.9575 110497.8085 22288.5828 113843.1512 38276.7175 60365.9689 27419.2671 124791.3512 31964.4799 24580.3598 64078.7571 367041774 rgl Carbon Cycling Carbon degradation Pectin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 8210.7963 11427.5297 8222.8534 5756.5523 9050.8649 5500.6712 12146.3893 4419.7016 6479.9599 8561.1423 6278.0723 241570.8846 11727.8803 8774.2577 10602.9853 7756.8407 7756.8407 5614.5645 12683.5919 9099.7199 7532.681 9859.0678 12361.0437 6134.2275 6237.8834 13555.1019 3980.6691 17978.1873 12897.2722 13752.8998 9150.6974 5880.0807 7118.9828 10775.2198 11155.17 304393545 dehh109 Organic Remediation Chlorinated solvents NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 12799.738 41111.4798 9741.746 5815.3667 47403.8095 20558.9608 14087.9637 16878.3404 12844.5246 84338.1414 9365.1912 39064.9463 10569.9385 14619.999 14619.999 4314.5429 22567.9027 10208.0469 13313.6171 9700.6247 13616.3031 23089.8822 8289.6042 10527.4762 11595.345 23480.8539 34317.0992 35842.666 5052.564 12344.8341 23881.3375 10514.8549 6638.9942 329902080 bend Organic Remediation Aromatics Aromatic carboxylic acid Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 33805.4427 13691.7762 30457.7064 281710.3571 36795.8388 15545.9402 38769.1337 55299.75 28064.5478 34277.7764 109415.4859 36319.9172 844432.1011 105636.0277 114532.6462 66993.1748 51719.7541 51719.7541 63642.1327 65245.7079 23326.9753 32498.3918 97400.2843 33799.2657 24667.4369 24584.8909 60004.717 16064.5821 144122.1445 28805.8829 42053.5312 16437.4986 39932.6554 33650.0564 25332.027 34756.8913 302350999 ppk Phosphorus Polyphosphate synthesis NA sediment metagenome 13125.4071 7729.9337 188799.6491 188799.6491 3086.4149 3237.2372 8081.9716 2236.2731 84666915 urec Nitrogen Ammonification NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 54666.4983 13511.213 584846.9378 113893.4016 44993.6357 43615.7108 11438.8879 133003.6456 36225.8649 22953.4428 49295.1799 40711.2446 3654805.1843 68296.7545 38751.5372 48640.9726 30906.7111 30906.7111 100309.0312 48467.3989 49638.7442 63930.1577 388684.8271 65080.0245 33614.1846 35927.4232 95774.6934 45904.2867 67558.2913 49580.5528 71085.2554 73601.326 31303.6297 28859.1397 30690.7286 48630.4375 256362074 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 5949.686 4625.3541 14034.5835 4911.2277 3209.9592 6483.0391 5275.5098 9868.1834 4632.4502 117026.7094 4841.9903 22282.3625 5905.4662 4721.8106 4721.8106 5113.7737 13280.5017 5331.532 13934.9621 6994.3111 5075.3989 5698.8238 5103.464 10833.6308 4512.4803 31527.0099 7671.2504 17132.2062 7661.3058 6594.0469 5256.3507 3681.0775 10365.9986 337277256 dsra Sulfur sulfite reduction NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 14660.9787 11234.2458 29564.67 18126.1527 4534.5772 13195.161 70361.9586 7514.3017 33388.3406 7969.0858 7147.5168 235691.8066 9964.8659 13907.7744 22683.2693 9199.9832 9199.9832 14134.1456 21359.664 13765.676 18965.3076 19287.0809 13643.697 16615.2902 7808.7922 29178.6165 102689.9208 35654.4839 35081.0638 137320.0192 9234.8899 11649.6665 24939.0528 11849.5027 39844.9226 196176253 endoglucanase Carbon Cycling Carbon degradation Cellulose Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 8794.7765 13365.5137 10783.8852 5583.7694 3547.4969 2559.1829 72720.0182 6017.8124 3555.2192 105552.5315 7190.4133 11753.1006 6358.2033 13917.7152 13917.7152 4840.6766 11676.1274 9606.6162 7895.5975 13350.7186 7897.919 5231.1638 5592.0629 8576.6723 5743.438 21198.2332 9916.1865 15159.8001 3581.6721 8123.3109 21691.4236 6615.199 6391.9544 109632489 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5044.0369 22761.6337 9654.6375 17931.4855 6534.6941 5605.9413 9126.3149 7549.3794 12665.0189 12195.5951 4848.8025 16736.2974 16736.2974 379552.981 8856.7412 30975.1479 8198.0443 3775.3826 8799.0703 4370.6533 15556.4077 6559.408 9859.557 4330.9564 7228.9784 11957.6877 4572.7742 162072845 dsrB Sulfur sulfite reduction NA Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 5597.5603 8797.0968 5737.6191 2232.9638 4482.7173 9629.6783 5069.3995 89975.9389 6444.1802 4917.3626 6540.5191 2591.0894 2591.0894 3320.7578 11961.0059 7292.3534 5508.4426 7285.1754 5683.24 7900.3907 9493.3491 8442.3256 3569.8219 43634.4958 8055.9617 10545.0356 2640.5683 10029.0963 60035.2402 10182.2249 8178.3927 299752630 exoglucanase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7943.8459 10027.3712 14252.42655 2485.5313 5935.0096 6443.0626 4859.005 2976.3948 102305.7544 6520.2848 3044.6439 3044.6439 4772.6578 11338.7456 4984.64545 7992.6849 7690.3066 3493.5885 9392.8535 3710.5198 16135.0727 4727.027 10309.3424 3305.153 5489.3005 3743.039 12547.6808 169820670 catechol Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 62298.7781 47209.8745 30277.0454 34825.078 13236.2369 35509.5445 90172.601 32931.7506 68833.3712 78459.0899 39325.6844 785783.1494 56870.7963 37126.3845 66738.446 52643.7975 52643.7975 39446.5494 97428.5096 44948.4983 195623.8446 171849.156 55356.0811 99338.9849 50856.0832 51792.4977 39990.4849 176663.5948 47651.2961 78002.1944 61773.819 77859.376 73590.0546 41070.1169 83066.9204 46358547 p450aro Organic Remediation Aromatics polycyclic aromatics Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 8372.5212 14425.168 12037.9645 3617.1703 5281.5916 64786.2877 6680.0501 13303.2637 5621.7389 224598.7112 25737.4468 7091.4568 4741.143 7954.774 7954.774 12162.9359 15885.1064 11035.3388 16927.1084 31635.1866 13127.9296 7872.7242 8523.5138 16332.8945 13036.8656 29706.9196 52227.6697 17166.3174 10081.3139 12649.3288 10201.4802 5199.1649 39597.4294 147850096 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8886.5263 1897.3856 2147.2453 4358.1946 12394517.894 7077.8257 5585.9921 5585.9921 3424.4693 9602.1275 3644.3736 5678.5695 2286.6869 5111.9163 6232.8197 6610.5786 1778.4457 3371.7674 4693.7853 37726843 dsra Sulfur sulfite reduction NA uncultured prokaryote 9145.6079 2884.7961 9323.2887 3883.6572 33240.5032 68264014 amyA Carbon Cycling Carbon degradation Starch Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 61533.9703 146376.6749 30221.2095 112030.4388 88923.0161 28171.9308 52116.3711 65371.9778 66286.4677 74897.199 186531.9813 92441.8232 884658.5856 65161.4189 142426.3485 128420.5103 52140.6085 52140.6085 116255.1301 227733.6282 106876.9111 67238.0937 67600.0679 56966.4261 68190.5974 63056.4697 65923.555 159979.2405 118301.4526 82606.274 93333.7397 95230.6112 76552.0145 175898.946 48420.94 148439.7117 160917476 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25509.2438 72066.1505 38193.1996 20994.2584 63283.2598 22384.7524 30475.7369 72637.4054 25870.0194 20505.3838 27997.6849 21471.5738 510606.3844 33829.6245 56097.3188 75976.2549 24079.4698 24079.4698 15217.8635 48379.3518 30179.6251 36681.0726 34844.3923 100441.0766 20361.7506 31927.0523 28901.8636 16396.0443 200420.6938 29330.0815 34711.1841 15870.5683 22469.6816 27862.5372 15444.5236 70883.6507 300024641 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 131377.4774 8229.7059 28848.1043 10341.3416 32814.0394 17230.0474 15986.2117 6947.12 17051.2559 16719.1298 9941.5963 363817.9561 24119.1619 25778.997 17670.1833 7271.2038 7271.2038 13937.3755 35083.211 14504.0037 17673.8132 23993.5322 21232.3292 9617.7285 11137.4448 21887.1854 53781.1984 44813.4698 18643.3234 24671.2014 12753.0463 15392.396 14442.4565 65096.5187 23530.6242 85668487 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 4841.3035 39039.7343 4226.793 2730.337 2588.7521 5007.0191 4588.4642 8618.3893 5974.1949 5691.2911 3694.3765 3694.3765 2762.1754 12507.6912 8473.8726 5134.7335 3906.7335 8503.4294 5644.559 18844.0952 11402.1907 9150.4603 3802.0646 4226.8064 12147.3309 4159.0234 8225.668 126470054 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 107003.491 32365.5802 17456.6431 304570.692 17238.0941 38517.7858 83256.4992 285186.7794 52378.4725 73282.9567 62739.6096 1960625.3379 31306.7856 62261.115 202661.5395 77464.3099 77464.3099 32054.7611 81934.3441 36510.169 49344.0216 64036.4763 181427.1714 41970.1324 56441.5152 64536.4079 55708.9961 144377.454 95376.5283 125960.6713 44517.5878 40376.3168 145707.6147 30988.2056 184991.4521 311282912 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 24486.4642 6816.8049 14877.1368 34774.2683 7320.8384 32593.3726 42568.5689 4833.41 25490.5222 93816.8084 11391.388 412548.3806 17180.8979 16974.7875 34671.9057 24910.1947 24910.1947 10581.3903 20357.1912 21113.8752 10541.2001 43503.8602 19394.5292 26898.1296 11020.8416 17326.3213 11657.7001 36645.3729 82777.9544 19028.6497 13766.3478 15993.3537 13777.2879 12539.1059 24796.1401 330427312 cmci Organic Remediation Aromatics Other aromatics Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 11688.6622 5120.7271 11411.5753 32027.163 12538.3321 7711.7278 10942.863 46806.5252 6626.4084 7855.676 15744.9476 470181.6125 16864.6349 17311.7574 25721.0931 8129.251 8129.251 11615.0365 15835.8905 10349.2821 220477.6096 18803.2265 11382.2991 22450.0553 9243.1227 14459.2377 34219.7446 33515.4779 19282.3207 18011.7792 14940.7615 12211.134 8227.2966 7271.2189 25731.8804 27352384 ppk Phosphorus Polyphosphate synthesis NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 5624.0677 15117.2259 2068.602 3695.142 2133.4837 4529.9532 2879.8083 7546.8503 3197.8626 4059.2749 11736.7275 5643.2989 6594.5164 1730.8471 2595.1151 3057.8894 60476006 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7468.844 7238.8555 80223.4325 10065.7319 6321.5471 6687.2149 7187.0412 103167.7569 11966.4225 25264.5844 9270.6306 96876.5998 9821.9778 24445.8375 17856.71 21031.2964 21031.2964 5638.743 10172.0009 10897.1062 5042.0413 20040.9981 8217.3787 3945.1666 20666.2681 20319.8325 5643.7306 21149.9957 16084.8135 20182.9347 31644.5441 7105.2956 11768.1539 12106.9716 76289.4561 381383687 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 30652.4521 8875.9518 7043.4157 2064.2544 45819.8389 5339.8071 3642.5393 3218.9482 2583.1166 2583.1166 5108.8598 2239.5247 4810.8262 10609.2281 3194.2892 10523.4396 9470.6921 7657.7254 4690.4488 3808.2311 354470124 amoa Nitrogen Nitrification NA uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6323.3059 4993.9762 18931.6676 14311.1715 6826.0861 2419.2438 3926.718 7019.5788 9146.2387 3640.6423 214935.8068 7877.2917 6137.2302 4445.9152 2814.6118 2814.6118 6470.7413 18591.922 8335.4477 9062.0847 9808.1595 14419.5842 4738.2737 8013.3167 15669.5317 6869.3903 20679.6298 9324.3592 15591.4931 5833.8319 7528.8632 8514.9798 4634.2599 14529.8841 308177680 amyA Carbon Cycling Carbon degradation Starch Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 20816.3082 195442.6659 27276.4396 11617.5628 13148.462 16535.0573 16434.2347 8229.4338 14341.6892 104308.0174 12234.9373 481859.5042 16293.1634 19436.6366 18114.4139 16072.6504 16072.6504 28356.6382 35238.2436 16743.8862 94181.9462 35040.2718 21391.0968 22168.903 12203.0665 21092.8235 20091.3576 39700.866 20868.9843 26067.8279 13157.4833 18204.27 42598.1862 8948.2609 26087.3363 115397527 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 101144.2072 335337.1323 23335.4761 57990.7626 24121.9941 16402.8968 28663.2919 12879.3859 39744.4963 44545.1572 152948.0423 1463521.2836 54432.9046 55385.4556 60172.3456 42755.375 42755.375 443893.1058 65160.0919 40169.9146 25340.2236 75914.6996 781844.3551 37399.0017 23914.2809 37990.6557 24481.3511 89923.352 36812.405 56482.7267 16792.3771 33753.5701 25122.1869 22994.093 20403.0651 118467352 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 60593.8071 97530.8635 42261.6983 201634.5083 38452.4609 38244.0513 67628.7245 21990.345 64030.3774 88989.6122 74403.2396 726206.913 54678.3016 163942.9992 61194.9995 59613.6504 59613.6504 25399.3044 231276.5087 29051.2359 22659.6468 32161.3234 65516.6896 37550.1413 108259.4778 60649.8724 28973.2255 104905.8507 68312.4536 81042.2957 86469.8631 41181.6044 54420.0963 19209.7255 45258.4485 377554000 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 6092.1837 5220.1135 6361.7721 14636.762 2837.7265 3824.7757 6503.7383 115946.6485 5686.7216 4711.7617 4281.161 9632.4235 4406.4169 3933.8129 5044.5194 8047.9377 3037.3334 9699.3113 2746.0217 13530.3665 7286.5252 7830.5467 2256.071 5146.5818 5663.433 2884.3562 16360.4861 409402577 phn Organic Remediation Herbicides related compound NA Acidocella sp. MX-AZ02 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 12072.5904 8006.6133 8346.7036 6765.0569 5640.8121 4044.1785 11140.1807 11597.7863 378303.6236 220137.533 10684.9756 12373.4968 8459.8456 5855.3679 5855.3679 8222.6319 18590.0964 10945.1258 10257.4083 14982.0119 18941.4753 5232.162 7119.6031 14360.1225 5549.3428 20666.1161 10944.8721 18272.4983 7489.7576 6499.5464 10089.4421 7526.7906 16395.8311 326950107 pcag Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 37936.9515 326905.9776 6305.5518 11141.464 10928.4293 4693.8575 14121.3098 8385.9841 208436.8616 6884.1965 16341.5445 11619.6114 28967.9108 28967.9108 4266.4209 22809.3966 13388.8155 6411.0488 18156.6391 5544.3817 7089.7006 9196.5299 10597.9891 11555.6074 33964.0598 41586.4551 18311.2916 8242.6579 25972.5071 11751.0075 12716.4671 11526.8982 225016067 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 65832.4158 426910.7921 6580.5805 14981.085 6544.1995 71152.5606 72088.546 53885.7901 28810.5971 21665.4615 42930.1416 540498.3377 33232.2113 75557.6794 46336.364 45458.6765 45458.6765 23904.2513 44703.5753 29485.1265 221853.4068 115863.2942 34935.2961 22404.9108 20950.8867 30869.0475 26280.5789 147471.2614 31302.8828 47941.5059 13628.5681 25947.1531 37705.6627 19101.7125 974820.0962 238920023 amyA Carbon Cycling Carbon degradation Starch Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 35152.5601 24089.4754 24267.314 166809.0622 69335.4195 51327.5137 33999.3271 18135.457 110689.1271 192548.2244 50803.3517 973870.1795 87618.4307 48969.7285 60369.208 39360.4562 39360.4562 40123.3394 90617.7258 43043.9961 37246.8439 51991.4805 36513.8142 23797.5404 35904.6473 110144.0716 114421.0242 103068.2421 89901.8592 66185.1276 44994.2498 36299.4355 40381.8577 32310.0428 33581.1897 106769291 nifh Nitrogen Nitrogen fixation NA Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6703.571 5697.7519 40817.5054 5229.085 4686.4883 2337.9247 5070.9841 4925.6428 2819.3874 128012.4757 8259.8004 18129.8615 2390.2901 2390.2901 4284.0351 13968.0918 6680.6354 24835.0021 5602.9631 8596.8245 5053.3407 4532.2582 10593.8445 3501.6557 13524.8202 9058.3092 9491.544 4699.709 4362.7599 6774.352 3132.4009 14999.3174 157407680 urec Nitrogen Ammonification NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 28070.2684 10367.1779 4796.0663 7565.7836 3994.9645 30988.1906 2734.5979 14404.9333 8214.2559 11145.472 169891.5673 7410.1402 26277.8927 10355.156 13768.9187 13768.9187 4720.2939 34066.2106 5609.649 6165.6489 11242.7973 9776.7729 4875.3584 12077.3009 21521.6071 14802.7153 11644.9341 8538.1563 12834.9601 3744.1972 7317.9207 16371.5745 8526.5185 12326.8357 294056364 nifh Nitrogen Nitrogen fixation NA Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 7480.6888 4941.0625 3297.0418 3504.1355 2224.0994 3538.411 6481.858 82191.4773 7164.0927 3961.4967 3645.5112 3645.5112 3196.1735 9133.3319 10158.2421 5277.4003 5180.6584 15624.2232 2809.4297 8093.1739 3838.4896 10781.4642 6929.1665 7131.5525 3523.0682 4376.4063 4589.7571 10304.8268 256393948 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 117184.0234 42577.4762 35632.1923 87113.8629 27776.0664 51219.2124 66618.7164 22920.7527 39454.3751 70994.8051 84262.6107 1117876.36 50450.0972 83999.1631 111736.8476 95429.6681 95429.6681 38051.8866 95893.9322 30174.967 61449.2482 101266.2532 243231.1462 64981.6549 52293.5548 73771.7564 117169.8997 101896.9587 117925.6819 68224.6495 27204.0248 55614.6105 41506.4155 56516.9438 425874.8835 307726447 pcag Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13725.8128 4745.0499 19558.0024 6258.4618 15281.9764 15164.1569 17847.0049 13497.4725 26440.9909 119674.4976 7451.2269 12404.4918 16101.4004 8174.1371 8174.1371 9444.1669 20562.9163 5552.6054 25460.4338 9911.4995 8575.1942 4084.1518 10967.8651 10030.9843 6792.8928 27601.0737 15431.0628 14988.1589 6897.94 10520.5498 11374.8969 19988.513 19184.4359 311113754 nirb Nitrogen Assimilatory N reduction NA Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 18896.4005 4278.7144 6809.0056 5177.6105 2699.8981 3826.207 4682.1079 4753.873 6182.6912 2851.776 110315.2327 7317.2314 4470.254 5062.0869 3726.0077 3726.0077 3543.3917 7368.4761 7220.934 9662.1968 6259.6753 8558.0479 3950.6773 3331.2832 6689.9906 12789.6977 4416.6487 6998.7603 3044.0564 3442.5947 5136.4456 3310.3285 4644.584 29652656 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 134652.3943 29063.6642 23608.9525 55749.3747 35553.9384 14005.3346 33718.8358 45538.989 33507.7901 378410.6062 42476.7866 103614.5346 796926.5597 43179.7087 47687.5257 42780.9688 79122.8949 79122.8949 24387.4202 43023.8337 26890.8823 101898.2699 61194.4883 39010.4036 20542.2765 22328.1816 39506.9765 21541.9258 69201.1083 22553.2076 55690.1093 19384.7837 43981.0975 43224.0971 87441.0102 44957.2671 121606034 nagg Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 27139.2177 300820.8076 42328.3676 7990.2596 8615.0307 13830.0689 29236.0293 11202.4911 10653.6072 15740.5877 42882.7684 556054.418 14432.0086 20064.4605 19388.9787 20227.2826 20227.2826 13197.817 26882.8228 31435.3691 46860.2522 38058.2117 17907.5115 25914.7472 10810.611 16500.3777 24305.1642 39777.5712 21457.8664 27448.1825 15607.5755 11668.7067 32112.6559 15204.1401 42511.5888 353203241 fosb Virulence Antibiotic resistance Degradation Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 7782.5682 3572.1156 251029.4732 5912.4489 7663.232 6420.4744 10268.4314 169845.9637 13032.3339 8360.6019 10862.1435 6879.6868 6879.6868 5170.9544 14499.8519 11133.6487 9175.0828 9306.4222 6065.5268 3385.2888 19981.5736 40537.1887 5599.286 19157.2119 18294.906 12528.643 5984.9863 10348.8372 11589.8715 9968.5725 8468.8625 337739167 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 15969.672 14066.5147 9315.6586 21360.851 12273.2952 18700.3439 5027.2467 8240.0746 23855.7077 9798.1042 166926.7606 38623.9357 15672.3793 9008.2937 7962.7436 7962.7436 6695.3755 32105.2782 14247.7559 45734.1802 22730.3096 8030.7566 32048.1584 7098.0114 18441.5499 6510.6003 32417.5432 19654.2704 17318.4906 5238.5742 7814.5635 9466.9936 7246.0243 239962.069 221736382 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 24392.4565 11879.9198 24489.1485 47147.1083 16117.5737 4638.3594 40102.8625 27778.1059 16591.865 20023.5491 27936.7394 10495.6057 708702.1562 23647.7195 26477.2363 25160.7984 18652.7705 18652.7705 18223.421 32833.4272 24931.2742 28235.8341 32804.2701 32521.6587 12972.1668 19398.8964 27408.8179 21951.974 53321.9395 33626.8902 32197.2293 12491.05 18263.4117 16262.202 12165.6901 29861.6075 295898549 tfdb Organic Remediation Aromatics Chlorinated aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 59509.6474 25800.7464 37027.8154 93386.3006 48922.3278 15375.0957 47995.6874 42155.7662 45201.5471 45489.861 48409.1315 51324.6598 1711767.4272 50622.2204 53324.4732 61716.3245 37838.698 37838.698 53908.0958 81107.8537 52500.3375 54770.699 291257.898 68252.4563 162749.5981 31112.1695 46264.2739 78109.3537 141118.8444 30088.986 58633.0522 29695.0786 34665.8963 47020.2564 32948.6376 68522.9882 371952963 amyA Carbon Cycling Carbon degradation Starch Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 6530.8705 17717.7524 5616.8361 5208.8337 7076.8487 8894.0922 12961.6759 6081.8634 140114.3493 6390.6136 5084.0498 8094.4765 9603.9327 9603.9327 5341.3586 10206.724 7569.3512 12605.6381 7362.9222 9709.2406 3355.5694 5361.0982 8499.4828 8298.4168 14172.3112 13395.9261 8225.9544 7677.9267 14587.3129 34227.7258 6318.5553 10307.6661 111151678 badh Organic Remediation Aromatics Other aromatics Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 13896.8004 8528.2803 10071.303 3723.4122 17667.8998 17994.2294 5310.5768 12244.2906 7659.1783 132962.3917 9725.5111 6177.4386 6927.5389 28352.5163 28352.5163 4944.5223 34901.1819 8802.5303 7164.4043 9841.1701 39574.0883 8539.376 24967.9613 60966.4806 21260.8292 27523.1985 26127.9653 7810.8391 7144.2411 15281.5213 5333.0357 85517.7247 256357030 alginase Carbon Cycling Carbon degradation Alginate Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 11994.5328 6717.7702 15433.0015 26639.0019 4490.2841 31012.7165 8143.0875 10477.4737 7979.3802 189715.8212 7828.974 19923.3898 26577.1511 17162.2555 17162.2555 7738.9585 16589.0786 14311.3594 25644.0929 16554.4488 10555.7202 9262.8432 12156.4432 11258.6306 20054.8026 20020.3635 20629.689 35641.2376 6069.5409 11827.5978 12106.2272 12973.3075 9197.5789 212528230 dehh109 Organic Remediation Chlorinated solvents NA Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 9136.7099 7288.9976 2636.2273 2636.2273 6485.949 5514.8662 4866.6911 3162.2076 6723.9905 15787969 dsra Sulfur sulfite reduction NA Desulforhabdus amnigena superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 24012.4499 2626.2223 2128.1087 2128.1087 2397.285 379003391 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 118264.7357 9119.4853 18237.9569 9913.4941 15026.1639 22961.0973 16624.47 20611.2606 16887.655 17308.4429 214552.2473 13790.1765 51376.4872 25036.5518 13228.6121 13228.6121 4785.8998 32185.5677 20479.2684 7968.8294 88829.5825 32130.6858 10404.783 12191.4374 25200.9134 22933.4118 36497.6768 9566.1509 22975.3923 15455.5467 33345.0026 61043.481 89922.8921 11095.7554 335367346 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacillus coagulans 2-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 21024.8985 5872.5985 10529.6648 11696.6033 5941.1377 6101.3343 3783.2815 6909.4229 10246.2537 9211.2302 155834.7993 10517.621 13471.7059 5611.5318 4998.1866 4998.1866 5906.5927 15777.9404 11962.1136 6331.3184 13073.4296 13543.4651 10350.9672 6133.1906 15398.6509 11945.603 23150.663 16155.7645 47333.7052 7569.1043 8759.913 10219.9165 5069.6136 14410.3142 262333572 mannanase Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7065.3857 107220.9259 2865.2985 5785.9288 6735.7159 4943.7696 4943.7696 3078.4471 6642.8615 7093.6741 6743.0543 4212.3384 7013.8283 2751.3267 11484.1442 3973.5708 5310.5148 2821.737 9479.3195 335864333 arylest Organic Remediation Aromatics Other aromatics Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 14377.7816 19478.8987 9480.9484 12006.94 10731.245 56355.4125 120232.5444 15423.6691 19900.9309 12746.3698 8604.9074 180729.459 34857.5548 12838.6949 26940.7136 17624.3423 17624.3423 9575.799 19559.8314 9222.5638 7968.8487 10482.2095 8965.6001 10487.872 14599.3401 33323.2357 9679.6265 64746.7612 10462.8501 11806.3664 8305.6083 7541.308 8782.6168 6577.532 12702.4554 238548638 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 7213.845 15715.7476 6176.9756 8241.6688 7075.9924 85803.9651 29214.0962 6473.7628 4057.5163 4057.5163 8485.5261 5348.3422 9164.0887 19382.9755 3650.9164 3686.2723 5813.2729 7720.1559 11781.2039 5094.2217 6624.2657 5142.7537 2905.2462 305127798 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 10210.5653 5006.4139 17730.9766 13474.3228 5300.092 9942.5666 8314.6861 3457.2849 6666.4562 9286.3594 4370.456 251697.0749 12526.2977 7079.4096 5542.9989 4261.824 4261.824 4545.5858 22494.2388 11374.9142 15064.4378 16600.8213 11847.1098 6475.5166 7488.8585 16717.8985 6670.9119 29051.6047 14050.8999 13612.036 11006.4999 8646.837 8727.915 7220.8819 20628.3881 339323784 tfth Organic Remediation Aromatics Chlorinated aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 194533.7092 18760.4355 60449.7989 105895.4649 38700.0984 38506.4407 47350.922 170604.6682 155440.0901 65195.3155 85727.677 85873.6903 1231766.7667 159779.2242 84226.9326 160908.442 76677.2666 76677.2666 261615.2497 98256.8623 65839.92 49682.3819 81484.8939 69298.7618 125527.3896 43353.6229 57185.9967 92439.043 136659.2715 53640.6359 75687.3426 45014.8132 54806.7703 170416.4424 56791.6835 99144.6686 319786080 cysI Sulfur Other NA Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 49731.2792 21349.7189 13203.3895 16245.1942 7574.1683 11523.0728 19502.6925 45022.31515 682306.8589 22531.4493 32447.728 23503.2621 23503.2621 15418.9923 7120.3911 41113.3761 9175.2892 18266.4754 14405.484 11570.157 27269.8756 26606.1735 60476038 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 14429.3583 5785.8053 11696.712 37791.3014 32082.6352 2107.8369 7955.396 26498.7749 5190.5307 120813.3152 6723.3062 8425.9489 6597.5217 3543.3484 3543.3484 2783.4191 15708.691 11330.9426 32284.6237 60650.4475 10140.4834 4250.2358 7787.2843 11856.1922 6095.6871 25527.6498 10076.3553 8881.3096 4746.29 10834.2273 5716.4524 5257.5001 8738.7515 260612807 cysJ Sulfur Reduction NA Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 15216.4652 14059.4306 32438.8536 17326.8346 39598.0729 26312.0216 7393.2056 12444.1285 6951.5261 8408.5135 4932.2626 152750.6782 9794.5082 14914.8654 10377.8461 8327.0425 8327.0425 7423.9252 15879.3654 14557.0964 14533.8449 13592.5259 7587.2605 12255.4033 7015.9795 29925.8528 12437.7474 23413.605 12911.8917 11210.7567 10329.9427 10949.6768 449754.5013 7713.2899 18983.5046 55772793 SoxC Sulfur Sulfur Oxidation NA Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 6024.9932 12836.9864 47724.4133 21708.7827 5947.1515 17685.7796 3346.5849 7772.6538 8622.4359 8146.8123 545438.5855 15848.7911 29233.7958 98814.2814 34718.0727 34718.0727 4878.2973 23634.0293 13181.4731 12245.6828 5385.6698 9179.7351 3211.5297 10409.5409 26072.6791 4127.3653 29422.4217 14269.9787 20265.2652 5499.6796 7543.1797 10891.1267 3582.4092 11108.8657 162281559 phn Organic Remediation Herbicides related compound NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4318.2459 2696.652 4065.2109 4296.017 3734.3686 3734.3686 8098.8441 8266.9996 12604.1731 9787.1995 13312.6191 4817.2108 9957.1912 9021.9114 5903.2743 3069.5958 4038.0387 6988.3365 2954.0372 389312653 amyA Carbon Cycling Carbon degradation Starch Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 4203.8962 4476.4754 2190.0726 2170.996 6909.625 6259.2101 79799.6523 3709.5898 3709.5898 2602.0289 7256.7012 5902.4381 3678.4776 7400.2049 7997.4691 2307.3955 5944.3438 2500.8961 7674.0589 4383.9908 6287.9809 1983.6252 4070.3564 3184.0812 2105.2334 4613.0297 307544869 urec Nitrogen Ammonification NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 111949.6162 127636.3816 55494.2849 82819.2509 13775.8443 11042.8543 122832.7351 69013.6491 45190.4836 44222.2054 27235.8025 6736747.4343 20576.9361 48720.2254 76664.1804 88318.2834 88318.2834 17587.3318 40796.803 24758.5897 69712.9794 37940.6393 22894.4865 31748.9688 53031.8615 112175.9716 64110.5601 90862.5491 42895.2039 34906.4722 21988.1315 59170.876 80155.521 68738.1451 212942.0231 256690991 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 11511.8132 10876.3212 10101.4533 5781.8326 18812.6983 4714.2982 5986.6329 17320.8929 40277.3328 106831.4936 29133.6908 11031.9521 10510.6722 7464.7412 7464.7412 5665.1073 14410.6404 7227.4626 26056.7437 11094.1785 7002.037 7411.1343 6732.7874 8998.0381 33693.6827 23361.7769 7656.2835 12849.6608 8241.0663 12358.6373 14538.6597 6471.5866 11653.6134 116749742 nitrilase Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 169862.5069 13649.5736 13365.9764 29983.6101 81644.1111 9489.5693 14415.8225 28071.412 13889.1569 19504.5041 25305.1813 12837.6773 8895285.6769 78190.0886 29425.7971 21871.995 22766.6258 22766.6258 17611.4086 204814.3809 31896.4562 55899.9673 46073.4585 49721.0063 43134.412 21958.9176 28758.7221 14564.2452 40464.1585 37606.7841 40223.4274 10815.3692 15618.2349 39299.8635 16729.2782 41418.5316 227069527 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 16068.4223 8998.4053 10908.0267 10336.1935 6439.8579 17955.8921 15635.2158 4969.0389 15402.3321 18293.2196 16641.246 367755.9859 16987.6283 17467.0527 10999.4985 13558.1792 13558.1792 10823.2284 31849.5646 20243.551 22974.6134 19598.1493 46057.0225 15600.9767 12988.783 20786.4312 8845.5001 53567.0823 20283.6125 18829.1811 13497.2196 12472.2722 10002.2339 9305.5125 27483.2627 396992349 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces auratus AGR0001 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces auratus; 288425.6589 115331.516 52704.1611 5297.8752 191526.4744 7291.2691 7287.8272 10321.0832 58781.1023 11045.1816 160217.4054 12108.293 25227.0418 7570.8278 30558.4099 30558.4099 11681.8863 34644.5841 10967.2667 17757.9019 79545.9052 27634.1523 25409.3552 19785.8323 21443.6719 31987.7286 64231.1429 28112.1158 46813.7808 7108.8772 25295.0086 32399.2906 10037.283 32276.4 338740933 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 4203.1631 22744.2855 1798.4018 3415.1351 3266.7092 3998.1232 3129.5963 4199.0538 4199.0538 2898.3971 9886.4037 7922.7135 3290.6535 24132.4621 3067.9886 9707.3876 7959.2823 8818.1473 1821.7644 7112.3522 4006.2676 2150.9842 9612.9625 393720903 arsc Metal Homeostasis Arsenic Detoxification Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 14128.9657 14486.9275 7727.0108 24822.1469 10221.1518 114260.2116 9089.5127 11463.4919 15078.7052 10432.41 156137.1991 48199.4645 11071.4914 12128.7515 6484.4651 6484.4651 7248.2616 22819.3163 23693.9793 14733.5755 26416.4947 19993.3892 9404.3783 8858.3452 20985.3353 17720.087 48634.8976 20553.5054 21327.435 11897.5734 15446.3915 15810.6076 28046.525 27562.6143 300760377 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7125.1495 7343.1738 13415.5858 5131.7767 3594.2546 4167.6395 6920.7616 6823.5596 3199.8104 112480.8333 8080.6786 6592.9827 3276.8155 3276.8155 5957.7696 12839.5707 8014.0044 8093.6402 10317.1114 9262.2531 4247.5063 5015.9555 11739.6531 3398.8576 15380.3862 8682.0243 12578.3113 3552.985 4654.4816 6272.8134 3159.144 10838.2975 116235163 nosz Nitrogen Denitrification NA Brachymonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7048.7487 4573.8055 19977.8892 4370.4779 9466.755 3789.1974 7510.061 7556.4079 173113.9791 5323.3099 11688.3323 4675.4917 7366.0435 7366.0435 5074.862 8012.9832 6191.0586 9099.9483 5514.6457 12633.9108 3274.5006 4429.0036 11206.4012 9768.2865 20633.5375 6647.7558 9227.9106 3947.1376 8293.7121 5733.8379 3987.0085 7753.0219 158331529 terc Metal Homeostasis Tellurium Detoxification Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 31144.0334 10629.4108 29489.1769 25112.256 5790.6209 16022.0125 31650.1028 17683.2987 10019.9603 41258.3045 13256.7137 255268.1526 17288.453 21007.4522 39362.1122 20684.1419 20684.1419 12765.9445 24532.7792 17010.5666 19672.9404 39059.5382 12444.4656 12290.1902 16753.2883 34227.9867 12622.3605 31217.6242 28333.9319 21668.7795 15250.7664 17748.4761 14409.313 21980.6412 17778.3183 114564199 nrfa Nitrogen Dissimilatory N reduction NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8853.6284 4524.8902 3047.3248 3452.3181 3595.0456 5918.2312 15180.6693 5855.7228 77683.1222 5026.9033 7545.3365 17071.0495 2622.1023 2622.1023 4242.2163 22570.8925 4382.2905 67363.0781 13246.6088 10616.4238 3239.6008 11242.183 6746.7834 3157.8399 11504.0574 9015.6044 2706.8341 5210.2898 5400.2737 2838.7094 4303.2084 169610375 pec_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7125.6821 20953.4518 4099.4643 9877.8638 4561.341 3998.4455 3009.3486 3610.7941 5740.5752 6830.7885 9322.8261 108295.4259 6082.3735 6331.441 32938.1732 3008.4421 3008.4421 4685.5701 8316.2983 22334.2492 39253.3344 8995.2604 162061.1165 4480.241 5056.8045 9297.8146 6056.1052 14738.6405 9720.8872 11894.0233 3385.462 6641.3391 9484.043 4503.1228 4960.6372 170144434 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 59955.1728 33294.2941 7188.7385 15590.8348 28017.119 10246.4222 13532.9073 18031.4647 16961.4763 21546.6447 55113.4055 20846.7616 358576.9554 14691.5769 23061.028 33234.2596 35919.5063 35919.5063 12119.8009 42174.2765 15176.0295 53286.3468 20099.7237 9859.3294 10407.7641 20760.2158 33100.2034 28256.1504 46886.8574 25923.0527 24271.564 13713.1947 15551.561 47236.7815 15143.6982 19264.3186 158312924 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 15801.7671 11359.4517 14383.3314 27558.6682 7252.1237 4136.9829 9713.4543 9961.8122 6413.5027 226907.9212 12722.2578 8023.7997 10752.8374 5339.4443 5339.4443 8740.982 22928.152 11853.2765 15279.761 22555.6362 12342.888 263353.5457 6160.7981 17422.4652 9446.0183 40934.2866 14497.7376 24641.925 8674.1265 10162.8992 12305.3822 8043.4462 25233.3628 85704852 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 61256.7844 94315.6657 44921.3569 17471.6183 114246.2865 6756.9517 24675.3709 31792.9011 47646.8109 50650.9513 76917.0601 44354.1652 224629.6058 361210.5744 35967.2432 85111.4131 47591.8461 47591.8461 21574.4025 205319.7342 20486.2849 42649.7843 47325.9108 17720.7994 20362.4109 32659.1188 33429.4228 25701.2498 79155.3919 153674.7852 52758.2245 30117.977 46369.9754 31137.1713 90908.8065 28808.8136 222082141 narb Nitrogen Assimilatory N reduction NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 88798.7195 320806.3751 56949.039 37331.4036 15586.5375 37510.5844 37811.0269 4084.6515 57886.3097 27303.3318 17442.1379 2603445.1937 54900.4709 66710.8292 19305.7847 39547.8181 39547.8181 22278.3746 276651.9843 59302.8004 11512.3895 12359.2813 35265.4966 11729.3961 93318.6343 51638.2387 39997.9978 157277.3943 78810.385 138252.5409 25872.0191 27466.9605 59023.5549 15280.1405 14710.6794 229818250 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 13242.9538 10647.1336 5944.8639 1546505.0194 7549.673 2400.9422 6196.9103 7769.7459 4408.0041 6601.0694 84861.5112 7032.0351 6416.3042 8259.4702 2119.6307 2119.6307 8065.2614 13585.8697 5922.6205 5019.5294 11984.7905 5399.0035 15279.8551 3355.1952 4220.9939 2953.4106 4092.4384 7192.4231 3634.0938 3885.9146 4379.02 8701.6309 11934.3821 403714691 pcag Organic Remediation Aromatics Other aromatics Kineosphaera limosa NBRC 100340 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 46068.6572 12252.7093 125773.6298 43316.5931 24486.35 17225.7097 33210.3974 35780.9633 46182.8883 49026.6949 54828.7369 89961.5875 1245303.6339 59185.5446 33984.4842 34738.6256 117734.1886 117734.1886 22610.7676 57522.6145 27631.4184 88845.7281 79820.5324 44984.0037 34259.4262 31241.6378 155317.8783 24217.8473 96017.2691 56263.7661 63704.9087 21738.9285 54602.4688 51920.3227 30235.1875 1835001.3316 119373932 tehb Metal Homeostasis Tellurium Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 10542.5381 6842.9868 7220.102 18574.3628 7543.4891 5450.9364 3626.9781 7131.8746 8724.8788 5409.6304 258264.4998 9284.4566 9283.6217 4766.7221 4766.7221 14357.1429 16584.6813 9819.0971 10184.8076 16106.9467 11729.6008 4161.3486 3933.6085 15368.104 4862.4548 13010.723 6127.1827 11555.7935 4324.3554 5921.9945 7294.776 4088.7563 10753.2757 151563605 nbac Organic Remediation Aromatics Nitoaromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 5994.6435 6374.2123 38638.9346 15439.6197 2659.3585 6171.6232 5411.7664 3961.4496 95978.4612 32615.3126 40741.8974 11358.5475 5070.1968 5070.1968 7362.3759 11446.9688 7290.203 4251.5658 5663.93 3022.5425 9637.9601 12471.8036 4369.8694 11124.6425 8311.071 11600.5795 4024.7242 5065.9019 8954.6497 3797.662 5748.9788 333988879 nirb Nitrogen Assimilatory N reduction NA Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9851.6923 7259.8978 5427.3507 131404.4252 2277.9635 6351.889 15432.8131 7007.2309 25126.2478 277467.1943 7634.7955 8558.0979 31898.2448 5943.2594 5943.2594 4156.6754 18988.8083 10526.7617 12516.7125 25326.242 29932.3231 12522.5229 7393.1726 8927.0063 9626.4144 39238.4418 22649.1142 15451.141 5236.7835 10581.4226 10630.314 6855.2121 7703.5852 355382638 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 29799.7065 39138.568 5111.092 17309.7318 81548.0585 7525.7088 12926.9847 7835.4633 64539.1368 29153.4327 40763.538 480470.0302 21331.986 36472.6156 44070.4776 17052.2983 17052.2983 34835.28 89244.7735 21968.7143 21527.6185 23623.5365 24657.8384 12316.0212 16330.7342 22196.2597 9431.9815 58526.516 22646.3272 23913.0659 10634.8746 37701.166 26233.3424 13161.0627 24476.6394 146342198 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14704.7885 5339.9369 18894.5967 13380.5077 5602.7665 3517.8204 10116.0896 7766.701 14701.7725 59757.3787 8144.9048 149598.2163 13991.1574 12221.1204 13819.1895 9701.8411 9701.8411 6605.6175 19632.5898 8520.2076 11821.8329 8433.7247 16286.881 18606.1448 6412.7996 18030.5922 7280.311 46647.7972 15270.3534 15233.5373 5462.9826 10844.4902 7762.6365 4664.47 15136.6357 349701885 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 56926.7735 310404.3935 374567.1245 49002.8768 11856.7417 9754.2095 214954.4946 12796.7647 27224.5229 20254.0591 37843.8527 717305.1659 27081.5806 58523.2749 77796.9927 90163.4281 90163.4281 15426.257 32373.406 24499.4522 22151.9614 43087.3993 27020.8645 58077.934 27807.5822 270570.7194 165727.9798 72303.989 201573.9562 39443.6757 20993.5178 20246.1413 23668.3938 88722.4584 48652.6034 118592975 xyla Carbon Cycling Carbon degradation Hemicellulose Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 53596.0153 33674.7205 11557.1577 7117.6212 11938.5841 23372.865 11956.8313 15143.7643 12748.6621 49099.328 14277.7596 850871.2464 16632.0091 24626.5236 27826.9252 20376.954 20376.954 11581.0991 22272.0589 16708.9593 303537.0016 14369.3153 23523.3672 10734.618 26396.7174 25557.2761 11519.0789 34412.1486 11298.4209 29258.6503 19534.8176 12161.1518 16166.7786 24871.7367 12949.1669 258602414 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 22888.0688 16865.684 4871.409 33305.2491 3499.0667 5221.3256 36327.6685 13846.7198 19979.4875 5448.1425 155326.4494 8947.2544 32967.3034 7910.9308 34418.6397 34418.6397 4389.51 17261.3818 10021.7937 11947.7179 13419.1179 6577.5547 8924.1752 9060.5138 8760.8032 7076.5976 20271.5841 9712.7191 12589.432 9848.0467 16351.5515 7870.3102 7723.5144 9796.5494 197290632 napa Nitrogen Dissimilatory N reduction NA Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 14829.2341 9222.708 4658.3787 9683.3394 17741.4826 11854.4695 27694.0217 19106.1523 27208.7145 17790.5524 225269.9907 10815.4831 19424.0764 42855.2231 38628.196 38628.196 3320.0776 28091.0064 76085.7973 58870.5942 25832.0164 19949.7018 10978.5673 15754.4474 20265.1304 140890.5453 27793.3336 24201.3186 23397.469 7639.8535 16731.2794 16679.6214 11545.1329 92592.6148 255933347 nitrilase Organic Remediation Aromatics Other aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 26151.80275 38909.7874 32810.0903 11625.84805 16250.86895 20226.49455 15117.1525 29061.2579 26340.6473 19734.25185 742800.68505 32812.9188 57247.41535 23953.2915 24050.7771 43814.8385 27505.786 28689.5558 47720.62605 45187.5484 19183.98445 18182.8439 16451.0649 63088.2576 30762.84345 16020.6619 22840.5637 23036.5285 40278.13575 407257494 badh Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 8244.247 14785.0466 8203.3006 12778.3401 7514.0308 4227.3718 6599.2186 5787.7935 6637.4047 147517.8794 9235.0036 7190.0592 4849.192 4088.4759 4088.4759 4591.0827 15089.4991 8050.2407 96290.0941 9025.6416 18829.3659 3860.8796 5403.5794 10562.9997 6313.6506 14973.2301 7035.3938 12751.2036 4384.9766 7903.3255 7052.3632 3181.8166 12375.2689 334090341 dsra Sulfur sulfite reduction NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 6864.6197 3015.9262 3597.6489 6834.4819 12563.5273 14492.6953 93952.5741 7083.3654 5716.3482 5336.6217 5336.6217 5830.2642 6647.7816 7729.1509 3851.6437 5087.6426 21581.6898 3711.1948 6174.1939 11674.3291 3460.5864 12867.6527 24155.2631 37936.8136 3169.6713 5085.3933 7849.843 2733.4252 166065021 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3925.5042 4949.6172 2235.6018 2213.3624 4530.4083 2353.699 2327.393 2327.393 3503.7168 6362.4552 4036.023 5554.5199 6174.8474 6277.4872 2459.4901 2371.1109 5124.7057 7731.9101 4137.5432 6875.6593 3524.4389 3456.3824 2634.7356 10163.4642 386854591 arsc Metal Homeostasis Arsenic Detoxification Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 5858.0441 9503.4103 2325.2201 45300.4704 1998.6444 3472.8044 4145.7205 3796.3075 12676.4143 12676.4143 11211.7979 3600.3307 5203.9705 27537.6593 4384.2962 9544.3238 2993.1342 80628.204 15147.1573 21379.0478 8080.0291 3501.6504 3714.3214 7543.9608 9570.9203 86283192 pgk Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10361.7002 5815.3378 11918.6941 12180.377 14128.9818 5112.3667 7703.9093 5188.1767 5099.7463 9143.6985 6740.9101 153420.2615 15900.2855 10203.3452 7706.3962 9272.8248 9272.8248 4943.7267 21895.4316 8578.395 10624.7057 18029.4012 37339.652 4900.778 9931.7193 10904.6044 4022.4917 23424.3391 8690.3573 11882.6612 4383.2344 8242.9773 9181.7293 5167.0247 11047.1514 157285706 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6051.3974 4894.49 4436.2416 2778.281 3947.8108 56731.8501 5631.0562 5345.7584 7000.2146 3696.9496 5499.6083 4740.198 2583.6933 2349.1201 7416.2719 6262.1694 2563.0767 4076.5661 2841.8212 2282.5283 5536.6552 70672897 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 62291.4989 170117.7037 15227.8566 9005.3382 10000.9337 15848.1938 29539.0832 11190.1318 20141.8295 12252.6895 250760.1642 16679.4514 21641.8121 10957.8155 10394.2044 10394.2044 9618.9073 27930.6436 14295.0938 24524.1869 25750.1984 17085.2058 13024.3459 5369.6858 22239.3551 31702.3746 75886.4812 21858.0443 24943.7795 10030.3496 14892.5468 30306.1426 10792.8984 14246.3624 317111297 Sir Sulfur sulfite reduction NA Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6556.6233 7101.0124 26897.2344 6436.5532 13203.4789 6212.2768 3722.9665 3515.4807 121929.7108 7976.9794 6102.0222 12130.1443 7301.4504 7301.4504 3560.6714 8086.8127 7669.537 6134.4059 3903.3579 10114.2529 3393.751 10167.0179 8232.8338 12777.1032 3595.7562 5572.4705 5475.5572 3723.9278 5370.5691 225020608 amyA Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 11540.8519 12542.5279 42445.9282 924673.4335 136337.6509 8922.7413 60531.6755 2976.5167 34970.8218 93151.4838 74577.3083 1244046.4757 73796.5026 84139.4839 87075.0764 76869.1819 76869.1819 32783.3723 51283.6071 30170.6379 18446.6324 33901.0447 27840.2034 8607.6536 42825.767 115762.5562 22244.2699 103292.0842 77565.852 77044.5619 20947.9978 51049.0473 52489.1192 13707.3923 12270.0088 182382484 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46825.8711 5413.1886 5499.7291 9788.6047 14862.0728 14474.1463 14169.6607 11136.9854 86106.3406 19811.7996 117649.5658 9240.3792 18189.2832 14831.875 20014.962 20014.962 19456.9584 27377.405 7402.0606 26117.875 14755.4863 25577.1769 10577.6673 18794.5979 34007.4908 17559.3804 128901.0005 14149.2483 23384.8502 7343.3705 16570.3573 37655.6342 14954.9015 21565.9223 357076096 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 14836.5841 120507.8136 14769.5456 53357.488 10885.833 4080.5595 10018.0687 9238.883 8044.9137 11498.4194 7031.1595 284380.5119 22732.995 21853.3054 22612.936 10908.0049 10908.0049 13498.7835 20766.7661 15646.1712 67298.5344 25496.8122 26203.6625 6256.6558 7212.1182 27666.8728 15931.645 29875.3316 26944.4808 22653.7938 9561.172 14954.5585 8251.0162 6375.1397 11595.7646 361062553 RgaE Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 4089.4129 3769.567 5588.8797 2245.5132 4914.4886 4694.3397 75005.4443 4649.2911 3331.3947 3807.7537 8437.6623 5402.2694 5531.6938 5710.6508 5404.519 11777.5127 2622.02 5639.1927 2198.9266 10634.8203 5759.9045 3293.9971 2964.6742 4760.1905 2441.308 11556.7097 365844513 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 86978.5202 12683.1031 30046.8544 17007.2496 30066.6382 45084.8245 40932.9665 43611.381 43621.097 17999.9984 30035.5614 28147.3092 440359.2585 33753.6385 27716.5664 30346.1823 40007.6228 40007.6228 19080.3319 52538.2985 24071.8037 19308.5895 45408.3286 24095.2169 12711.3886 15450.6325 41069.3167 20114.7634 68882.7243 20003.1656 28556.371 21072.1169 20592.3746 20221.4251 16347.6937 25871.3162 153852900 bco Organic Remediation Aromatics Aromatic carboxylic acid Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 14386.6722 24498.1056 31228.8726 7041.7098 13673.0355 62226.8825 16093.6721 21118.4029 13858.8587 18038.136 14587.8298 478419.7283 15418.6371 15430.9844 13514.6033 14547.4532 14547.4532 12105.6139 26066.912 72056.7572 18493.0844 27723.2739 32547.8221 11841.0643 14787.2683 27510.4933 22103.655 56481.2996 26845.8022 23444.4505 9844.4434 21668.3911 102156.5929 14316.6823 25761.7816 169831034 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 47793.8033 131823.788 12787.469 36412.485 202386.1633 12968.7907 94645.9575 40236.6631 24689.7713 60992.6041 34634.6578 284863.7917 27027.9475 45336.1362 47573.9935 28239.7381 28239.7381 11684.4441 35134.5372 16850.5756 40270.4248 50551.351 21495.936 12040.8094 18827.152 18814.4263 47276.8212 47714.676 33364.2547 39910.1836 16141.22 21156.033 109336.1437 11983.6306 14245.7802 126728076 poba Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 3955.7011 11983.1858 20900.7338 3429.6787 4274.9778 9504.5041 5948.7082 98540.2704 5297.1145 5030.0643 7945.2569 16774.6398 16774.6398 4223.877 7697.2205 4133.2373 5705.2058 11145.9381 2892.6113 4066.8031 5745.2908 2555.5414 11108.0731 15400.1481 6375.7181 9012.7148 6989.5621 226834394 terc Metal Homeostasis Tellurium Detoxification Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 14398.0812 34621.3792 13109.6418 5326.1058 5587.9115 5441.8135 10051.8101 16033.1253 14908.2726 146667.091 7810.8613 13062.6653 34163.7762 14739.1155 14739.1155 5058.8143 20338.2231 9482.4101 4667.3138 26035.2561 47150.5881 13292.3222 17356.7982 13511.263 85910.8991 31645.3788 15717.0137 60539.4684 7683.3659 14166.8666 23472.1693 10550.2302 31999.7869 1617425 dmsa Organic Remediation Others NA Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 4231.4097 10039.2663 6935.1945 3858.479 3529.424 2629.0082 3239.0801 4722.9902 14659.8313 110757.9906 5641.2611 7994.0366 2459.7023 2459.7023 4014.0013 6932.1482 6381.0268 7928.8123 10059.1616 2784.6291 2640.2883 8166.508 11136.6355 14539.1281 33550.9024 8664.8494 4401.6828 4815.2658 7688.6136 48222.9645 237861577 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus grammocephalus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 15579.8906 10178.0757 5771.9274 2643.7741 24442.5052 5434.4626 17007.9434 11864.1377 159641.2141 8989.3774 25471.005 46191.5244 7141.0061 7141.0061 8015.7579 15813.175 9587.0502 11685.3308 11281.2548 6901.8889 7507.9064 11332.8433 15547.1137 5295.8242 19236.6827 17891.9263 15525.3236 5749.7115 8710.9511 11313.2175 5364.5881 8325.4207 124495022 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 5576.4348 4819.926 9649.5514 35038.1153 5447.0354 3799.7365 5579.4948 5425.1193 60531.0404 4296.7812 5396.6252 4363.6241 4363.6241 3388.1708 9496.1095 6043.9417 7385.9656 4498.5874 2452.4917 9371.9113 3442.8338 11436.4604 7999.3557 11470.3918 2404.053 4173.5625 8425.2137 2424.5037 313884273 ppx Phosphorus Polyphosphate degradation NA Eremococcus coleocola ACS-139-V-Col8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 6248.8023 5642.9936 8160.2126 14136.8904 3859.5858 6261.5488 9449.1277 4258.0207 152263.2809 10162.7115 8448.3924 4718.7377 5164.5295 5164.5295 5758.0815 13861.6539 8566.114 8460.7893 12174.7835 15643.1034 3894.4119 4773.5491 11829.4818 4335.5202 24995.1146 6026.3847 10116.8003 7958.7737 7553.5516 7290.2601 6729.2926 11437.3597 91682817 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 37916.1459 27394.5887 19009.162 56911.891 6119.6006 37323.9895 57531.8074 41560.5262 59194.3815 78081.1772 42827.713 1042686.8223 45468.831 34399.3485 45472.5338 70212.9761 70212.9761 18828.313 70901.2225 24930.657 50490.9116 87218.1973 129895.8254 29487.1965 23755.6509 81664.8753 39185.7822 68523.6469 56613.461 102084.7854 16790.2626 37627.0937 37476.0663 20638.5241 27873.2425 294884149 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroB23_4W superkingdom:Bacteria; 10482.7443 6090.4638 6128.6171 35369.0434 9887.6366 3223.6347 9990.0012 3482.5974 6103.0222 10036.4765 4091.3179 129070.3081 16655.0308 7061.847 11561.326 9975.0635 9975.0635 8320.6327 13116.9354 9900.8964 16118.5156 7390.5699 4336.6179 3422.5849 4739.9337 21206.0242 31522.0544 21106.8363 27645.639 15938.708 5665.6447 6718.7808 9397.756 6322.2442 10676.9526 237876503 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 23382.2578 15741.4898 37143.4679 25562.9056 24771.1046 21648.3978 28785.9463 9786.9839 15318.3504 21378.95 16143.2138 343639.032 21265.5898 70158.2817 21898.0937 16087.1031 16087.1031 16590.7439 25726.4868 21466.3166 18042.0381 22002.3564 30211.4722 9378.3546 10894.0672 31074.6196 11619.5929 49440.9191 16713.9605 40297.9263 16808.5149 16595.7292 18598.4853 11580.5585 27184.4391 74038416 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 48884.5306 24535.2939 37093.0272 684961.3854 14660.5101 25512.2278 14074.1176 30678.9414 41210.8848 39771.1037 81810.7798 362379.6156 97470.9372 30002.5957 55307.524 71213.6824 71213.6824 15704.0094 45142.0931 26327.9802 25023.3696 25978.765 24421.4231 19444.0844 43763.8942 33979.4549 25711.8386 127300.5024 62382.2918 28645.4737 19133.505 84538.7168 26965.2852 29527.8585 27530.38 373892314 ara Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 39120.0033 25119.6557 32458.5863 9661.7471 8070.567 37134.6944 84938.3776 15052.56 40063.5027 19849.3943 280139.8611 18709.5713 31793.4302 31691.3079 24916.8398 24916.8398 11899.8183 19375.8243 11683.2482 18411.1681 63008.0253 48174.902 18180.26 18477.0598 27868.9749 13329.79 31207.8472 32200.1668 26072.1668 14552.5483 35140.3675 21277.7615 15820.0292 17889.3833 118501338 b_lactamase Virulence Antibiotic resistance Degradation Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 5381.3532 7365.1578 4573.3864 3684.6974 3478.0944 8773.4439 7568.4034 12491.6575 5751.3889 7538.3608 9289.9221 2402.8005 3172.4474 4232.589 23999.3436 6201.2128 7017.3865 3159.45 4197.6037 6514.8785 4064.2566 7553.2458 156534144 ppx Phosphorus Polyphosphate degradation NA Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 16108.6889 81312.6632 6969.9353 33809.7329 22916.9351 30292.6953 13983.0168 18502.4366 33776.9884 32764.0904 321482.061 92037.948 30247.0026 69710.1348 33254.0726 33254.0726 13561.7108 80719.8115 25684.4333 43078.6518 33513.4647 94877.6828 14787.1475 29319.5337 73028.7493 51197.3483 184532.8731 58893.7442 46923.1085 264787.9129 36245.231 148701.1969 29181.1076 18799.0312 160357972 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter sp. DM-2005 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 51618.6952 28132.3435 345731.7117 7653.5373 51304.5111 6745.4818 13958.2082 17181.2541 7160.365 223930.8589 14962.9283 14883.4964 28105.2434 6864.9045 6864.9045 26043.8433 24889.5951 11409.8939 63150.1265 23459.3441 23068.9491 12155.0672 10175.3125 11918.669 11735.6758 43867.8246 14940.6648 13944.0792 41290.7313 6862.4919 8950.2939 15472.0107 37732.1593 192764352 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 56139.618 11070.2327 24903.8418 9845.5227 42336.2271 17988.8289 103198.9913 70562.8296 23301.6604 147114.0436 32580.0954 39546.4024 1370209.3736 37583.1365 115035.3674 52544.6648 35342.1615 35342.1615 17735.4641 50224.6687 40012.8265 32818.3055 56253.6223 51085.5227 21019.7702 56394.2684 156320.1495 35567.8569 81712.9838 55305.2406 116966.44 217725.058 89141.7044 58936.8178 35213.8864 27002.9127 126355270 urec Nitrogen Ammonification NA Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 5193.6353 13427.1343 7560.2323 18107.346 4620.2978 10773.9978 2547.0614 7165.1778 8171.1777 6072.4703 119169.4235 5665.3145 13007.1458 10423.928 4185.739 4185.739 6519.9179 13379.3942 6791.7023 8447.6659 5296.6572 5304.8774 2696.4801 4662.6713 11732.5472 4065.5009 18528.3536 28274.9318 13268.9087 6483.7662 6109.5017 12725.8013 5422.7698 10264.464 118007278 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 24337.5195 19094.2639 14510.1737 5621.8249 10676.0856 7923.1226 13958.1979 9774.9811 16200.3733 18751.8796 23087.4666 267659.9462 48929.7284 48983.5899 53185.9153 14750.2081 14750.2081 14435.8697 49994.8192 30869.9855 13747.4197 41598.4405 18444.8325 17947.4227 16974.8498 15681.5119 11668.2186 53528.7972 22495.1666 28502.1951 8937.211 14921.3826 17938.3206 15166.3022 18185.1046 46307842 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20374.7741 669694.7204 14009.2646 82411.4233 6922.3211 5952.2759 69264.5959 266921.3455 30315.7564 19316.4201 5622.1611 4745.1929 5949.9726 4519.2638 10889.9659 5036.6292 2978.7494 5539.8936 5016.4659 3455.8593 94471143 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6297.9525 11081.5744 16205.5182 150132.0417 72777.7029 3544.6041 14928.5857 14928.5857 4724.2295 772839.891 3648.0672 5235.2332 9915.9196 124267464 catechol_b Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 12964.5083 6136.3509 54050.5453 16225.8632 10386.4468 16585.5677 5469.0938 13599.3974 72507.3505 5611.2707 162812.1015 9330.1918 19185.7844 57641.4643 16234.1257 16234.1257 8584.4833 33407.0285 14869.4457 17111.8694 40928.3331 50250.8689 9833.3161 11632.8499 14004.8286 17174.4793 42488.4179 68742.8825 16848.7323 8926.2165 15560.9501 25637.6599 12129.5972 42734.3971 157678998 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 31861.0633 21258.4822 8697.4161 29896.9908 8810.316 6752.064 32323.3293 17771.6874 26134.261 64578.3767 26606.1726 403520.2492 28614.6866 106241.5065 37700.4711 30215.5504 30215.5504 24289.4733 41934.5264 77847.3344 23442.2156 72409.4473 84458.8792 45275.9465 34722.2637 89223.389 32252.5327 73900.4708 41826.4744 26872.612 28086.0056 33603.7444 30480.1515 45261.2271 29228.8413 28869917 cysI Sulfur Other NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 40253.749 67594.3915 16341.262 30130.0886 5344.3436 18509.637 44223.8902 47324.1484 22969.1301 24316.9644 26096.18 351977.041 75724.2269 87470.7204 71323.4907 25011.0251 25011.0251 45589.3348 50468.6056 43759.2604 19121.8641 31372.9065 33412.7979 13717.9742 21082.0576 29260.6681 54513.9055 69221.5977 21140.234 36604.5292 65422.371 42323.0778 32821.6598 21573.4737 35023.9564 164455874 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 52491.5543 133027.8645 113423.5042 377559.9987 50518.1568 47245.563 133963.1275 79239.4511 42430.6804 90861.0252 61376.7351 805942.3833 66563.6231 54290.8207 50529.4545 60583.3401 60583.3401 39774.95 109346.2556 54165.1261 61108.0621 61601.2896 63978.4036 36895.3749 35600.9826 96833.041 43148.2514 186223.5263 68626.5772 87799.909 54402.2642 38288.371 79439.5707 35551.8468 38877.3321 302436914 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8308.3095 6474.8432 117596.9143 3878.9132 12118.9215 5643.6088 10810.7972 2606.4411 178634.7787 10892.5842 8824.2389 5691.604 4559.4843 4559.4843 5207.3226 12493.9839 7356.2966 7422.2965 14338.6468 14428.1666 3702.3394 5112.1736 9862.3128 3496.0719 21196.8314 11113.2335 14731.8851 5156.3075 8735.4425 6327.5178 7850.6467 13440.4149 257169861 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 618873.5844 9955.9195 12297.8277 42161.5435 99316.6086 18494.7337 13122.5344 28922.7092 35560.1023 568793.2776 34623.7927 17716.9377 20619.8599 9793.3779 9793.3779 15741.0648 26217.0491 17858.893 28104.6593 17984.0402 26979.3761 11390.6576 11218.6008 24490.478 13717.9018 54152.1433 26759.9917 28282.226 11307.7762 15455.2638 22541.6829 22292.8541 30240.6954 422314229 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6759.0966 3700.1027 2948.7997 3180.7835 15176.1582 8082.6055 5787.1871 7662.7757 11914.2145 5909.2294 5248.3882 5248.3882 5090.3917 13763.4148 10256.0258 6998.8107 10905.9577 13094.8109 5251.8143 7330.6791 8740.6127 4930.704 24402.1008 12256.6242 10068.3746 5376.7734 7927.414 14637.491 5603.3841 9419.1953 113528451 chnb Organic Remediation Other Hydrocarbons NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 21473.1106 10565.3876 16420.6997 4419.0127 4811.5597 88869.5512 3890.2996 2637.0585 2637.0585 6957.0858 49201.1229 16145.3624 15207.8155 27605.941 6410.3131 5599.6881 5825.2929 9387.1477 15293.9131 12829.372 6348.5652 13721.0201 13129.1241 4283.604 17602.622 2438.5263 11738.1532 98960774 phenol_oxidase Carbon Cycling Carbon degradation Lignin Gyromitra esculenta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Discinaceae;genus:Gyromitra; 5977.6474 8287.6814 11546.7242 2757.8542 2316.5197 5873.6859 10046.1959 4762.7308 7703.45 7031.6757 88877.6565 88877.6565 7849.7524 7833.6258 42014.4217 4313.2925 3140.7321 8780.3865 8191.5453 10659.6148 2238.7669 4682.204 6103.3784 2497.1942 4376.2312 302389150 arsc Metal Homeostasis Arsenic Detoxification Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 197030.1965 17186.277 16978.0165 12766.2661 9895.114 23417.8864 35953.5245 26397.0783 32127.7943 37068.7458 354913.6869 26339.8538 31363.8005 42721.3237 28005.4737 28005.4737 101715.2263 40888.5285 22660.0985 29386.0789 75469.187 25942.7612 28571.9377 48279.8503 26345.2987 36799.5048 58775.8534 19482.2422 42116.5077 15215.396 32041.262 53394.4464 14809.2481 50931.2632 86131209 nbac Organic Remediation Aromatics Nitoaromatics Cellulophaga sp. MED134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Dokdonia;species:Dokdonia donghaensis; 4233.5212 4459.4727 1888.6042 288330032 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 5010.7055 15037.8777 11992.1508 5544.0257 2519.0924 3987.6912 3571.0447 60163.4114 4335.5512 4037.3609 2642.3513 2642.3513 2826.5798 7152.5371 5383.7227 6895.718 3520.7843 7296.5509 9934.0139 5177.6799 8619.109 2292.8797 2835.5151 3420.4591 2385.7573 5792.1441 88701121 atza Organic Remediation Herbicides related compound NA Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 200468.25 5305.1433 19046.6705 5047.3712 5045.1585 3314.561 324306.8729 19872.1158 3921.8978 15828.1369 9561.0996 20461.9218 10295.5742 10295.5742 2683.691 16508.0828 11515.9948 22313.5746 15582.6359 9318.3113 12167.3859 7518.9958 8167.9201 22034.8409 20625.4287 11525.0247 29441.3264 57438.194 13440.45 9148.1569 7760.6585 7301.9984 289209550 tktA Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 12120.4252 26775.3916 40067.5035 20691.6225 7560.7923 10600.1198 26040.0109 15831.4272 14061.2534 37416.4204 18210.9087 532647.2689 68009.1262 22283.2705 11557.9958 14867.0081 14867.0081 8887.8793 21377.8796 17079.461 28935.6859 19341.9808 24211.7582 12040.8138 10104.6626 13153.3228 12591.9207 29583.3466 21470.809 22854.3943 6816.7771 16783.9999 10704.4412 36102.2214 13496.6835 45386155 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6033.2107 4949.5326 5663.9156 7472.4822 3509.3581 5812.3195 2412.0399 7242.1578 22040.7575 4733.0261 140099.0321 9114.8952 4849.7985 5692.896 6502.3243 6502.3243 5840.2442 11379.5634 9205.1143 7975.4872 7704.7358 16851.8027 5483.2259 6295.1278 10433.9667 7741.2004 19939.6651 8359.7044 12112.2415 5829.3293 6803.8093 8188.0386 5101.5355 7178.4529 15075594 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 20479.3398 6261.3187 19609.5807 8914.8512 28086.6155 7972.4772 10375.8344 10778.6423 9111.3842 207108.217 8950.7537 30151.0243 8574.4094 4759.0263 4759.0263 10834.7727 20801.4651 11639.5665 12980.4876 12142.0705 12815.0993 6723.328 8037.8278 17732.0259 10197.2211 223873.5825 18444.8509 17123.0475 7377.2087 9476.9917 12088.0712 7184.2473 19859.0398 334125649 urec Nitrogen Ammonification NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 13633.3738 45007.7767 7368.8416 17975.8876 32448.629 14970.124 7304.3371 10235.8185 5528.1193 13748.8923 16874.6954 10777.0653 373460.4992 17983.2974 16061.0771 11474.4579 11068.8445 11068.8445 7190.8973 17766.1235 11274.4173 21299.9928 15896.8991 19119.7992 6837.7064 7389.5384 14986.4925 6173.623 22464.8943 8343.0459 20381.682 6737.1018 11081.2145 13097.4266 6557.9143 19798.0547 403068819 phn Organic Remediation Herbicides related compound NA Oceanobacillus sp. Ndiop superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus; 4434.7835 16122.0649 3324.9683 2183.4963 6589.8379 6768.9425 2995.8336 152678.6133 4951.0202 8935.5618 2039.0866 2039.0866 7911.9724 8894.9509 4734.7241 4660.3537 4811.9324 2558.1965 3357.9969 7637.2213 2484.2571 12121.813 5666.7549 7949.5683 2099.0975 4507.2125 6454.5174 380732338 chitinase Carbon Cycling Carbon degradation Chitin Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 20294.2547 13701.3868 15517.1969 63894.5295 9679.3988 19496.9785 8224.8782 12976.6459 21198.7873 12798.5949 352764.7587 18971.0631 24252.5559 11976.4848 24513.2317 24513.2317 23954.8311 37114.7892 31513.2052 25282.284 47973.0384 19737.6925 28528.5613 14762.0603 27707.2268 16535.2291 55901.2599 24618.9923 30395.6679 58252.7085 24770.0176 16893.7311 11274.1031 22955.2448 398224218 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 58604.3418 3046.6236 6298.7536 6304.1086 4379.1583 136076.6135 14734.424 6845.4653 4177.625 4177.625 4011.6163 11603.0161 8912.2539 6521.6005 15480.5581 4990.0008 4597.0408 3949.3014 7462.7306 3313.3357 14371.8046 8825.5375 10936.338 4116.8486 5431.2068 6489.3803 3818.5366 11035.4307 150850240 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9043.8732 27186.9993 6946.8687 8768.0094 6402.9136 4640.0311 3670.6012 15906.7608 5883.279 8038.7026 103866.1965 10303.5341 6603.6716 16347.7258 16347.7258 15404.302 17492.6975 10087.7109 7918.593 16556.2502 8256.5042 5529.106 11631.6391 9891.9134 4020.4041 30147.6106 8782.018 12984.1419 5383.8036 4667.1549 8152.6512 6414.483 7275.5449 296426459 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4067.3079 11050.8975 5108.2914 17910.8751 5621.1618 7339.1228 4896.9423 2252.9975 2252.9975 4897.1841 7984.6073 10207.7237 8459.1011 10319.2839 2433.3079 5914.3563 3848.4677 11203.2264 5567.3721 2612.6104 4513.4673 5299.5941 251837809 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4630.876 9049.6311 2846.9834 2814.0704 2562.213 4772.4552 4092.2852 2662.4412 74661.1743 9114.3218 6557.4384 8621.1793 6434.9119 6091.6849 4634.156 4657.3461 3616.8862 4640.1371 7671.5069 3377.649 10714.1532 4210.5551 5350.0136 3714.7673 4065.923 7035.2993 3931.5557 5917.6501 339274371 amyA Carbon Cycling Carbon degradation Starch Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 9640.2032 6123.0362 7426.2561 8849.3199 7203.0834 8105.5508 7507.4459 3379.5244 7833.612 9813.3245 4846.5848 184014.2461 7587.0874 9454.2712 11377.6436 6762.3993 6762.3993 6664.7465 18228.3704 10258.7539 10115.9011 25060.0842 13539.1727 6154.1797 5752.7194 16500.6028 6454.7767 32064.6725 10233.8787 18672.5655 8064.9724 19798.4012 11599.7354 8032.9268 13953.8323 119355978 dsra Sulfur sulfite reduction NA Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 6916.5695 8023.4612 10293.8394 50608.2476 15623.6817 2532.5688 6912.0059 4283.7078 5159.3425 9589.6214 9175.9473 8316.8031 5644.0126 23321.8361 7395.5729 13653.4966 6267.1383 5889.2647 3091.6067 4893.2576 82884148 endoglucanase Carbon Cycling Carbon degradation Cellulose Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 23560.53 8454.9103 19930.1632 39688.6722 13706.6915 20282.2145 56348.1005 15791.9742 50155.3418 545293.0486 8499.4872 11600.8439 13993.6633 14543.6065 14543.6065 52528.1804 28141.9424 7082.977 18412.1372 22527.2596 23860.6944 9953.8622 9103.1044 31246.963 22725.9957 30012.0339 19619.5986 27863.783 7474.8374 12010.7878 19085.3406 27739.5312 15192.8705 266625300 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 10875.1907 7472.5566 13869.1003 5685.9465 4299.5768 3693.4597 9373.7765 10329.9809 6209.7679 229789.6034 11969.9639 10854.1864 4744.5416 3924.3379 3924.3379 8319.3771 15869.4658 9203.6 11128.8444 12476.5661 13640.0113 7883.425 4351.5151 12046.4942 4390.5524 29846.3421 5346.357 14812.7866 6721.7177 8149.467 7611.6743 6763.7181 14490.8455 302436876 chnb Organic Remediation Other Hydrocarbons NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 23450.5461 10922.6571 27939.9915 23475.0882 8538.4777 16247.6646 9108.7712 6076.6255 10295.694 15293.5822 6504.5135 211666.3415 15076.8536 18584.6175 11710.4205 7396.4852 7396.4852 11005.5451 18732.3076 11780.0396 9338.5927 13406.7513 21848.8909 6248.3901 7290.2237 19866.6767 10256.7847 32079.6534 66383.7645 20681.439 8033.8842 11558.2238 9759.7102 5386.9644 17129.6484 288554348 amyA Carbon Cycling Carbon degradation Starch Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 4120.9427 13148.0745 5659.2681 5020.1261 2837.317 3337.0994 2414.8669 6657.4 6570.9771 27015.3513 111901.6214 7527.2672 4587.629 5086.9732 5086.9732 5177.985 14498.3201 11224.3951 5211.2329 9866.8976 4402.5774 4283.1708 3966.4715 11570.3572 3983.8639 17323.6296 5543.2612 9724.2394 3649.8668 5099.3855 9878.6714 3659.1239 9809.482 154503842 amyA Carbon Cycling Carbon degradation Starch Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] gnavus; 6032.91115 7708.13905 2540.9266 2797.133 4774.9838 64059.0094 4308.9492 4352.0706 7165.6561 4778.7549 5142.6955 5534.63525 4925.1731 2365.1302 2894.0817 7008.961 4025.2638 10597.8714 7017.7447 7731.5505 2563.0515 4440.2123 4311.6979 3174.8895 359780850 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 5782.1882 14150.522 40401.2224 6674.2442 6533.0705 3863.8368 11221.1928 43162.1323 7453.7072 258182.0489 20082.6855 6644.3336 18018.0364 6430.8548 6430.8548 19378.9984 13648.5854 9741.28 11917.9478 7169.0273 5925.3721 7710.7916 5751.9665 12036.6231 3683.1499 104813.4127 36955.4825 12557.5662 6777.0282 4877.6968 10958.4953 4919.2914 299541221 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 9631.7313 21344.9177 10423.7291 14733.8091 20043.037 21109.3187 6984.7927 5507.0775 97949.4582 2522.6765 71560.3765 6367.6998 5693.0908 8121.2698 3337.5463 3337.5463 5980.758 7118.2596 10098.0176 10983.9141 5530.5682 8712.7241 2625.1188 7882.4128 15682.075 5609.9554 15736.9665 10306.2799 10549.9771 6673.4635 5182.2207 4796.3842 10288.0798 5766.3604 84388610 tktA Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 972684.1337 1428742.1235 1099504.8099 1222954.2317 1748299.9421 492579.3904 523640.0041 622695.3221 442040.9841 560662.3332 1146258.0652 388012.9804 10838651.3029 819785.8538 735866.3669 1684237.0682 596420.1556 596420.1556 474643.8147 654006.9095 510236.6624 962345.6853 958050.8514 920518.8895 417579.7127 389816.1624 721017.4978 303848.6491 1053999.2435 759329.9315 754846.2248 405829.286 367597.5422 400353.5603 399810.7156 1057681.8172 300780737 ppx Phosphorus Polyphosphate degradation NA Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 5541.1439 10968.4913 6006.6023 9678.235 3539.5154 19785.0544 6401.5521 6107.3347 4156.6755 12420.9242 6434.0909 5103.9234 14478.8336 6979.6184 8119.1996 3457.4595 4596.0075 4359.8092 295412521 catechol_b Organic Remediation Aromatics Other aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 38019.338 18970.8867 17321.5183 36725.8163 62771.3743 15059.6958 19437.275 326618.9627 15769.8295 31037.3364 37102.9106 25352.2387 947200.3583 33789.7468 26371.7594 29979.6953 317369.1827 317369.1827 16408.0604 43502.7793 26365.6849 30856.3067 95974.3791 209477.3412 17398.4346 24714.5866 33652.9885 56635.1081 69718.294 21571.7701 66332.0119 17612.3139 16506.4133 32377.4727 14831.0097 32595.0937 387889117 catb Organic Remediation Aromatics BTEX and related aromatics Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 19569.5416 7656.6894 5308.2508 13761.7706 6706.3912 5577.6148 5746.3407 26836.4061 7351.9698 97403.5299 53506.3325 9632.6389 16340.282 7179.1874 7179.1874 6379.2332 17266.1266 49024.6517 10285.6552 10666.5326 15902.0267 6030.2567 6826.8113 8670.4997 4906.3115 18371.7961 99352.3904 7064.8414 4820.0527 7608.2818 9436.7233 6418.3813 8096.5253 373253227 xyla Carbon Cycling Carbon degradation Hemicellulose Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 50534.0021 23100.8249 39392.4724 56048.179 22058.4145 15155.0657 16469.2219 7871.2546 32175.8157 179754.907 77872.1392 355607.911 28618.6148 401248.5469 89210.7312 90061.7804 90061.7804 53757.6755 71240.8257 20476.8607 43282.1954 23416.8817 15897.0524 21840.0246 21132.2032 49765.3979 35353.3093 66887.2716 66882.4506 49750.2763 24567.4725 33224.0209 33205.1177 33897.4482 23828.7484 94471305 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12713.772 7462.7104 3984.5279 4169.1372 3445.6077 5240.2046 4310.7413 36913.1236 7950.0437 4804.8236 4050.3826 3543.412 7333.5093 5388.0536 3717.7847 6752.6577 8310.2873 17763.6055 12921.9839 3881.1271 11326.535 10588.1121 15395.5768 2943.2575 4550.9965 4818.0007 3704.8787 7201.69 373252821 terc Metal Homeostasis Tellurium Detoxification Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 9369.4444 69203.2856 17177.4122 2560.4149 6949.9784 2435.0112 5001.0708 2793.3144 2793.3144 3500.0081 7777.2502 4777.9898 8171.192 19412.1494 23704.0119 3333.9269 3770.81 8618.9576 4763.8017 11481.5593 6593.0538 7135.3924 2932.1688 6250.741 4016.434 3541.9359 359312581 gdh Nitrogen Ammonification NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 14466.0843 29619.5084 7548.5702 13100.6807 10026.739 7162.7577 5338.2525 2901.2199 7345.4509 12416.9462 11246.7869 148216.6314 8874.6516 283171.9493 7666.7518 18529.8919 18529.8919 10266.5315 21080.1161 11238.4542 9648.1247 25434.2507 12911.0564 8395.8443 8956.7714 15681.2328 6808.265 25175.4069 15362.3599 17027.9819 5764.3964 17262.3002 10629.1456 3042.0924 9216.3422 344942029 arylest Organic Remediation Aromatics Other aromatics Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 16841.9432 379710264 chrr Metal Homeostasis Chromium Detoxification Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 232580.5128 9809.5532 65323.3784 116808.3897 55887.952 85736.6468 202675.5184 254633.6696 117482.7838 136108.8728 203579.9102 123304.0206 11583513.3955 82910.4892 150148.2747 221525.0339 123712.2601 123712.2601 88772.6435 263880.45 150014.7693 94880.233 226448.3519 147441.5596 81430.1501 74659.5785 107417.0308 124653.2541 341023.2709 244799.3885 171062.3267 148539.9315 116738.7836 108544.2823 130494.4964 156348.7115 152983577 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 64278.5215 11562.759 126585.7371 76976.118 228502.9987 5715.3862 18982.6687 24843.3456 52213.2429 16912.3337 37925.3536 35112.1616 190605.9278 20685.6132 38940.0761 90208.2811 263734.6936 263734.6936 67427.5629 144777.6153 30504.5636 50642.6371 487591.0542 144942.0281 40872.1256 27840.5868 64317.8603 36797.8316 127372.8253 429295.9531 56920.3017 40596.7498 44771.4821 81197.7328 20871.5419 99405.7553 119538354 badh Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 5163.7538 126526.3551 21624.4419 16996.9004 5199.4224 16638.8866 23570.5543 16664.9683 16323.5402 8528.6634 5819.0514 151473.3871 6248.7102 12398.9578 11899.0466 9955.9657 9955.9657 33000.271 31645.0323 6231.6453 10829.5075 4628.178 6594.3796 12223.85 6700.8279 13766.2109 11795.5708 10265.0792 5989.4815 6279.7392 7319.2791 5797.9144 6031.5707 146273428 cysI Sulfur Other NA Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 3861.3067 41129.184 2963.1137 3363.1891 3325.1261 73869.086 4675.8137 3364.943 9296.0381 4687.1566 4267.2898 5885.6272 2620.3333 5347.6427 5505.8772 10443.5069 9379.7584 2824.4411 4936.6242 271962489 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 57872.5472 9277.7784 5835.1751 14269.8872 7660.2602 12729.0603 8196.377 9913.6104 104873.0555 10680.303 226136.4158 20690.615 20729.0307 43873.3177 24932.9451 24932.9451 10499.6998 29133.9981 15984.7814 21439.2757 20565.5408 37650.2515 9270.4468 10384.3841 17351.4555 8537.2605 38618.8775 24235.8883 25810.9696 11272.355 11410.3359 15474.9942 8132.9825 19321.5239 298674844 mcra Carbon Cycling Methane Methanogenesis Methanohalobium evestigatum Z-7303 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalobium;species:Methanohalobium evestigatum; 13442.8453 111715.7945 4447.4745 33694.5142 15425.647 6223.8247 10179.6638 16718.7316 5711.2841 380251.8952 8779.9078 12359.8046 14331.4236 8580.9055 8580.9055 6982.9086 18082.2047 8614.335 33675.4969 13306.2816 36156.7566 14965.787 5382.0631 17165.6159 3877.8287 14773.5877 13147.1469 16409.3353 4896.853 9826.2119 8296.4967 3982.6154 9438.0817 302912758 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 9168.2171 11134.5103 4827.0399 38723.2778 11219.9358 2770.2076 3320.6316 8690.264 4576.8692 6475.8265 4586.4039 269207.9859 6760.0718 7535.2364 6375.939 5627.503 5627.503 2900.3411 10760.5908 9672.8275 4614.6319 4523.4082 7200.5483 2228.8003 4509.4549 14495.7189 7854.2898 12574.3943 8191.0653 13556.0281 7768.7493 4602.93 6044.8795 4105.755 4979.7061 91776827 b_lactamase Virulence Antibiotic resistance Degradation Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 8937.5282 11743.7238 8510.388 7827.9781 3206.0075 13025.6181 4867.8324 58054.6944 58054.6944 149317.2269 7741.3256 4371.4831 4934.4401 4738.74 3893.6341 5193.5752 2460.2174 30551.0279 7485.0386 5928.0953 5942.1733 4765.1653 2982.8216 54014658 cutinase Carbon Cycling Carbon degradation Cutin Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 76943.9909 132421.439 139951.1031 17393.1124 47380.2749 12145.2205 13438.3606 4642.532 13607.5269 17088.9741 25052.8579 377744.4632 22003.0717 39608.4802 34319.8882 100926.8139 100926.8139 12056.7455 53815.6357 12144.2334 99045.5116 350508.7379 26761.6831 15077.7864 21987.7597 81594.8389 22103.1842 37330.4475 146690.4737 40492.8603 21157.7837 38197.4927 19187.907 9838.6215 13537.5025 67526983 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8159.0695 9537.5895 3920.0348 1972.722 1972.722 40395.8592 8607.2461 4356.8114 35481.9685 8546.2891 14893.2685 5708.4314 146408285 oxdb Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 16095.3318 12627.018 16896.4322 25815.7131 7398.4488 14569.0249 229921.7532 10960.9643 15966.4983 32375.2505 13174.6381 554528.035 30494.2222 24214.8202 26271.8652 11216.6526 11216.6526 12337.1136 25603.4498 20430.8443 48172.9446 27602.3792 19035.2547 13777.9957 13627.8874 22663.3497 68669.7667 40036.8077 17555.3531 26620.2489 144365.725 14874.5114 26618.3256 60919.7283 29761.8393 158329216 phn Organic Remediation Herbicides related compound NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8031.4822 8311.4699 3491.2006 4832.6987 81694.6497 4591.5014 2763.8447 2763.8447 3373.1301 13579.0105 4960.4171 5529.2874 8110.7182 6960.786 3354.6849 8239.9623 2314.6736 11191.7293 3936.3231 9248.9299 2856.0373 4298.9147 4972.8721 2915.44 226244402 amyA Carbon Cycling Carbon degradation Starch Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 31121.5854 23042.583 19709.5806 59819.4357 12072.9181 15515.1344 21159.7017 47895.9925 28263.3066 51211.102 41112.0965 407572.8167 29882.4105 26496.1133 60957.6014 26193.3729 26193.3729 156936.9148 32449.8376 45542.6604 180867.1251 48509.2763 24517.8796 24303.8805 20954.1488 33443.9728 15676.1032 62776.7878 23684.4537 31767.3372 16105.5174 37381.0169 48798.1627 17497.8671 33498.5184 83647477 endochitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 5243.9874 20133.19325 4641.4946 5057.3744 16148.4491 6084.2382 10123.08575 35550.245 3321.54665 11054.3992 10858.52125 411810.30695 128966.7114 11518.17645 11478.0826 18619.9705 8382.27905 8382.27905 9215.4052 15961.29905 7013.3011 7474.2657 20099.66035 6566.88075 14223.2258 5327.92915 11778.69405 8581.4282 61000.0118 8526.8193 12034.25135 18669.21995 42655.0371 10351.0292 7038.03195 10882.8428 94495020 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8519.5275 39967.3461 15788.7439 17186.9171 4610.6975 14268.0085 15638.4963 26689.7216 16639.7688 48942.0233 42557.7841 171109.7817 120662.1051 107063.0303 81138.036 8018.6287 8018.6287 7012.6525 102391.2382 13286.101 9355.8278 47327.9851 6992.4517 3418.0898 10314.0005 21765.8161 16918.4534 72818.8913 35691.6811 13212.305 9768.3287 20688.7248 24395.9382 3488.3001 13420.0861 196221599 rgl Carbon Cycling Carbon degradation Pectin Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 12426.0455 18622.3873 26070.4398 51032.5599 8555.7939 6045.3496 10831.3507 6770.0494 8883.6225 26951.5342 10596.5428 331915.5508 50525.4458 24592.8646 13587.0959 11201.4991 11201.4991 10921.779 61106.2709 17574.8503 14412.3069 16566.5901 13199.26 8657.7547 11844.2623 41559.1735 9128.5748 45312.0456 19094.7065 21890.1406 9300.7516 14021.4105 13047.3373 8530.0526 22019.2781 373551561 urec Nitrogen Ammonification NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 310260.0787 10942.3674 59245.093 191736.8867 18638.6802 8859.3275 59598.2235 41680.7159 35978.6324 31082.0012 62108.425 37848.6904 1012345.003 38856.0095 53837.7349 64497.5332 43156.2167 43156.2167 77684.2674 63016.3396 42615.4234 64359.9065 76604.2802 32962.444 27919.3712 31351.393 72878.8618 53137.956 162515.6738 55960.6398 111298.4137 42300.0555 42512.3551 56886.7844 36904.7697 87852.0647 323707133 amyA Carbon Cycling Carbon degradation Starch Vulcanisaeta moutnovskia 768-28 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 11624.8913 5054.6653 8253.3155 4854.3221 4094.3738 4172.1658 9642.6473 8830.1174 4824.2114 268532.9892 8443.4283 8439.4265 7816.6088 4628.4249 4628.4249 7800.1511 12722.9193 8772.0519 9228.2579 12564.1858 9890.4101 4008.0136 5879.73 12928.1047 5279.5723 14946.3787 10763.3523 11836.3303 6356.6962 3796.4353 11441.54 5427.6346 13255.4782 307151430 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8151.8504 5397.7358 8467.5177 1901.9679 6051.1667 5024.5512 7959.0151 11140.9459 5780.5815 164821.6751 7608.997 6605.0623 7850.6378 4450.6051 4450.6051 7667.0254 40110.4124 63189.5112 25945.3562 7694.9195 7045.0968 4625.4141 13411.3036 13050.5272 6689.4837 18107.8291 5520.7922 11960.3805 4342.8634 5103.2584 9972.6693 5739.5747 9035.364 114537780 mer Metal Homeostasis Mercury Detoxification Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 26583.3336 19981.5406 10686.6215 21620.3349 5666.794 16684.7619 17439.0255 20103.3526 17685.3617 21178.1376 20486.0073 334930.8128 48085.6779 26914.3584 17117.3671 21977.248 21977.248 25396.564 46395.2613 33958.0528 36030.6072 18502.5759 2702923.4824 9475.0662 18593.7341 34898.2573 12931.8477 52790.4091 28881.8645 23384.4636 13617.3811 26241.2702 16316.5644 13006.3829 297896.7942 171694720 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 12136.9765 8898.6359 6736.8309 24901.1607 5117.4136 12956.3931 3556.9222 8968.7085 6753.5742 8863.0173 96070.5095 6837.8934 10328.6076 12148.2957 21250.9541 21250.9541 4003.4899 31383.3945 23290.7475 40426.1477 9950.7365 17991.0759 3289.8487 11713.4322 17942.1054 16948.3998 30401.8952 13293.774 20987.9366 4780.8593 8869.4585 11593.2924 4071.2439 6130.279 66849445 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 3705.5538 402757297 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter sp. NCTC 7422 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7767.47 25225.6561 13004.2716 2247.5779 3707.9453 6843.7316 4077.3946 24855.2132 4783.1868 118331.8179 7893.472 5707.8205 12392.435 8463.5125 8463.5125 8880.624 4444.1905 7884.6158 6777.8243 4305.5349 2431.2097 3962.0254 6036.0273 2554.9793 13323.4168 3358.4011 7498.13 5057.1111 3469.216 3503.2197 4305.4154 4693.9863 302407425 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 10794.6297 2434.8147 4387.738 5407.4967 5209.2947 4266.5393 4758.8154 2483.7067 2483.7067 8483.3295 7873.2937 4471.0337 155420.7773 2626.8234 22872.0456 9518.454 4389.7989 2776.8294 3875.5973 115361287 oxdb Organic Remediation Aromatics Nitoaromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 14594.7365 63554.754 4372.457 112910.5302 3841.2429 6720.8108 13551.013 20249.1132 153246.9013 8166.7753 13734.0522 16363.5562 50196.0291 50196.0291 5501.4125 14020.769 8443.8435 9124.6433 8305.9955 21203.9586 8041.0424 11686.639 11729.7206 7256.7197 123865.4889 47051.7714 14128.0594 181576.8374 7081.3329 15310.9646 3483.3341 12036.3946 377564652 amyA Carbon Cycling Carbon degradation Starch Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 5750.1077 17820.0848 8915.3294 63578.2309 8330.7626 5307.6063 6787.6536 6591.4251 10253.9398 120839.238 50510.1423 7178.7923 9679.0366 5658.7048 5658.7048 2951.7301 11205.0637 12181.675 462994.4982 4822.1852 6996.9942 7473.0302 13804.7035 3017.8436 16060.3126 10979.8665 18401.3678 5065.9897 8975.9437 4023.1788 363712707 pcag Organic Remediation Aromatics Other aromatics Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 8827.0934 10484.7028 10186.4003 3394.3987 4080.1072 2777.5449 6447.1438 6121.0683 10028.4729 92610.4892 6908.8887 7031.0041 10948.1674 3354.7236 3354.7236 2789.4731 7317.9039 6194.0692 33911.5461 28471.6478 15173.8535 3594.4573 8820.1084 7277.7674 13193.3971 9974.0283 4665.1199 7001.6905 3323.5661 3973.4625 5289.9991 6331.5424 12622.7744 383777473 badh Organic Remediation Aromatics Other aromatics Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 20497.6641 12502.6134 6530.5565 129107.2617 7351.1529 2719.3827 5009.6817 5404.8564 6230.5662 39234.4185 12158.1563 97928.1363 6334.7329 22287.9394 57292.7696 26083.5135 26083.5135 9079.8608 22747.7634 11106.5283 7949.7173 17976.4264 9336.8726 53795.9499 11174.4941 15837.5997 29121.5749 33323.0335 70523.6468 50500.8901 6628.1028 15343.5217 28770.9108 8432.2828 32132.9379 334860598 amyA Carbon Cycling Carbon degradation Starch Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9720.9287 6221.2182 21447.2207 46770.4846 8999.8984 7994.789 2788.6308 10573.1083 12492.5667 6301.5962 314835.1127 12680.4772 13173.5962 12947.5411 7139.0348 7139.0348 9939.7693 15370.281 14466.1266 9606.7598 12058.2482 7884.936 4381.6771 10850.809 17482.4207 3860.0175 51552.5442 14521.8777 17814.6764 4515.0793 7328.3396 10643.2016 3354.8744 21061.4021 288920236 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 73576.3011 59845.2124 6076.6598 12228.5567 7521.9396 4952.9378 9190.6111 17383.6448 25480.3317 356871.2357 11506.8087 15688.409 68204.1402 17613.3117 17613.3117 6818.2557 59278.1664 5623.3258 16122.6987 15660.598 14637.3802 14261.8512 11240.9269 15825.4104 9713.934 33354.2614 19028.0164 17007.8782 10203.6071 29988.4881 19222.816 13169.3364 14052.3527 284029242 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 8515.4907 6713.2309 14767.5289 9260.312 7823.833 8482.25 3125.2184 6448.4873 21009.1215 217865.7724 19606.4403 29317.7585 12427.8275 9461.0715 9461.0715 6360.5658 15018.1597 7073.8319 24567.48 94975.026 8916.1222 42181.5413 10968.3883 7907.2276 73136.6561 39560.6088 7758.9748 14483.6388 4393.9828 11868.4079 13549.5011 102469.6813 284029029 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 3930.1523 5029.328 4593.2404 8316.564 3625.5295 4564.1175 3422.8568 4023.3213 3973.4574 5899.0419 4244.2853 8479.3434 3752.8145 3752.8145 5041.6551 7422.8281 7125.6134 4232.2477 9878.9017 3224.2543 3563.5016 10958.6356 2598.9536 12367.6116 4261.8945 8512.6885 2968.0563 3662.3807 3468.9971 7961.3025 343532184 aoxb Metal Homeostasis Arsenic Detoxification uncultured Acinetobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4148.5409 6996.6749 3137.4454 36276.9127 3573.7319 5586.0549 2400.1347 98039.345 3640.9389 3586.6719 7585.8548 5971.8008 21820.9154 5478.996 5929.9351 2773.2156 3321.1163 6045.6906 2323.8796 10440.5731 4068.7033 8589.0058 2213.3209 3819.2421 4752.03 3018.6616 8406.5742 260430198 nitrilase Organic Remediation Aromatics Other aromatics Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 20062.6171 10304.9194 14902.5053 19821.885 11461.4944 4217.9836 3613.1999 26385.5488 11798.5882 246370.0054 4891.8376 11085.0262 34159.4735 12855.2694 12855.2694 3326.4628 8605.3346 3803.5999 4513.832 17671.1654 4438.7634 5604.923 16297.3451 9899.7809 6734.4512 40976.5887 9428.8079 12272.6169 2946.3671 6528.0729 4561.9323 11817.1398 48892.2177 157285381 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33026.0018 144923.2005 31144.6004 4955.3835 14352.5491 34035.8962 6370.5254 69951.5292 62341.9392 194788.9468 14051.8756 63802.8949 99322.4762 9343.4831 9343.4831 59017.7132 16874.2073 12393.712 53037.7378 10939.3737 5358.3189 11014.2414 10661.965 23619.9255 17521.5851 22056.9294 42172.5053 16623.6723 15601.5143 26946.5572 17500.4982 14542.2217 17238.7706 144899379 SoxA Sulfur Sulfur Oxidation NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 95846.5363 106056.613 98373.2791 281357.1732 9579.524 14030.4109 40878.7833 43490.7889 38681.7592 74686.8466 103307.1633 2734709.8801 42017.4964 56653.439 75631.4041 60428.0222 60428.0222 54119.8415 160790.1087 44081.0165 181244.295 110450.5568 55674.4384 40293.862 74726.3216 35131.1219 119635.8095 222935.5757 111882.8607 60797.3131 63842.1378 128067.9975 67322.7709 66903.16 57691.9039 225794504 chitinase Carbon Cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 4861.3557 4366.9955 3228.3756 3710.5629 4422.1888 4058.9122 63532.3207 4671.1121 5554.2473 8169.3832 2109.2329 2109.2329 6919.8615 9006.2952 8018.5738 5900.751 3283.3026 6793.7961 2373.2303 11317.2068 10256.3926 6953.164 2353.7132 3937.0856 3257.6718 2575.3947 163796360 tktA Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 187816.8306 14607.5061 10639.0033 37546.4939 38752.3044 48374.4449 16955.9642 148007.8221 46846.9803 49662.3291 558601.3281 52126.1699 54836.2405 27427.8592 330180.1492 330180.1492 48101.6722 70507.7696 18961.7092 27797.1354 57201.6656 16175.5413 16130.9157 29981.5919 36119.4644 26838.9063 77189.0921 65875.2584 33187.3354 16973.5027 29672.7185 26684.4099 37211.0934 29647.1204 388556628 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 5091.526 2129.3632 4137.1359 132923.2871 4627.949 9549.2332 3397.833 3397.833 6100.8158 7524.1135 4683.4329 3272.8625 2372.2479 3107.5751 3270.3092 306517187 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9709.9245 45401.3138 10906.734 7424.9556 7398.4437 7666.5564 13925.9224 8823.705 3768.4043 239011.0828 38632.4622 10033.1118 5390.2102 3552.7335 3552.7335 430722.9916 22568.2507 11956.9969 339813.2038 16627.1475 29711.0412 43651.1914 9303.5566 12827.4646 4798.3966 20715.1403 3636.1495 12397.2892 5345.2446 8625.1245 8101.0915 6094.7336 13349.8262 3157680 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 3733.2916 8651.3183 4906.13 4075.5529 7241.6068 3115.3941 8450.7332 4870.1194 8658.5995 2882.3583 297624316 xyla Carbon Cycling Carbon degradation Hemicellulose Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 10302.4063 5155.8653 38415.5589 8759.4506 11200.1486 14674.789 7880.9546 7705.1027 12252.9259 3572.2117 235391.9761 10121.6242 11147.8406 9580.6648 17610.0806 17610.0806 7520.2069 17312.3632 11710.354 8198.2335 13002.9792 8452.7666 5382.9968 6155.0233 78758.8408 4469.5163 37388.4945 9615.9287 20076.5901 8398.7846 9231.0251 17172.2188 7017.8962 12494.0372 212702319 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 8654.7506 5008.5779 4381.3418 4213.8648 6237.4705 8970.3571 10247.6977 196430.8014 7954.158 6466.1004 4838.0642 3940.803 3940.803 6111.7376 11715.6107 11532.0767 3655.7381 5450.0174 4224.6023 6762.4205 9401.2696 12515.3213 9810.9568 8813.4376 16046.403 4487.2987 8528.9702 15918.3619 9924.8321 9947.1774 386847932 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 612282.5416 323645.8863 150751.4604 613869.9086 185446.1925 76598.1166 326478.5491 190069.428 138323.535 247998.0543 226953.143 182224.3921 3222563.827 157695.6729 488596.0705 406318.6205 232618.5658 232618.5658 204385.6979 272322.2675 161231.1589 329465.7583 278215.6063 344581.2831 151024.5549 222390.4104 255436.6225 189560.8704 438054.476 199840.7272 266527.2169 207351.806 162022.2354 237905.9098 147204.8695 325289.8449 344037193 xylj Organic Remediation Aromatics BTEX and related aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 41052.3616 106994.6522 26981.8098 432496.065 131746.5121 18947.9578 23984.7436 30124.714 42177.0472 77850.1189 61941.8495 485549.0883 33472.666 29137.1696 36215.1409 30783.8928 30783.8928 23679.5034 106295.4455 23758.0687 18988.2136 73170.1347 22572.5329 29124.0504 56005.1015 34939.417 17079.5929 52287.2553 37268.0102 51383.2635 32247.4294 23123.9941 56062.3242 17005.379 43266.4836 353203108 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4893.8883 4896.1531 54711.8776 2734.2279 4390.1729 7064.2478 3869.6843 76651.5708 3904.6451 4484.6643 3584.3898 3584.3898 7938.9752 4364.1553 11834.9109 9453.3557 6104.5699 5836.7528 4645.7218 6075.886 3373.321 10577.2839 4287.9457 7349.7957 2360.2034 3585.2665 3338.7996 3404.1084 7772.9364 62149172 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 24769.295 18474.3774 25279.7588 26751.0803 20874.1114 9293.8847 20302.11 14937.6107 10604.4678 22803.3265 52065.1455 14574.6457 410551.9534 38549.6103 26343.6759 45824.3199 94411.2497 94411.2497 20762.4665 34787.5309 33294.4405 57886.955 47052.198 40351.1445 14874.5425 15049.8814 33809.5567 18079.8016 54273.0023 32034.7614 94380.5651 14171.3723 41438.8093 22485.9458 20393.9043 48087.3069 117959704 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma fornicatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 7003.781 19326.6232 21506.3365 3593.8865 92204.3946 3768.2643 28703.3153 4782.7989 8463.4363 8463.4363 19420.6704 6005.2043 5399.9544 8288.0815 5953.4549 12683.3367 5915.178 5632.1462 3258.4893 5725.232 2570.2782 227089383 gdh Nitrogen Ammonification NA Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 7764.4578 2420.1289 2343.3875 71903711 cda Carbon Cycling Carbon degradation Starch Streptococcus pyogenes MGAS6180 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 4152.5221 46462.6975 2059.1245 2086.3819 4947.3683 3880.1303 3490.0431 97049.6148 3699.974 4561.704 2117.7137 2117.7137 3333.5413 6817.3253 4596.1361 3546.2273 6327.0537 2134.2892 3140.9164 8331.2657 2829.2958 9445.1878 8456.4588 2291.0606 3654.3562 3713.0012 2516.5752 5734.9383 60593160 dsra Sulfur sulfite reduction NA uncultured prokaryote 4509.2659 5881.6184 5603.192 5413.5011 4060.2118 10995.5262 2131.2009 2131.2009 2510.5332 6890.6504 5823.4588 3307.3619 3697.8278 3047.6819 4911.841 2121.8254 6318.1514 4303.1689 2951.7137 5523.1137 153962608 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 783375.9278 414800.8609 795352.376 1641144.6009 498958.5324 496592.0268 762725.3475 568687.8329 788146.335 521288.64 757641.3812 379512.6075 13317331.4419 677566.5124 887064.5199 1588217.4549 656579.0505 656579.0505 401841.8038 686238.5968 432572.6532 1360286.7547 882948.9574 1408188.6875 400530.1823 343030.0958 609124.9352 333544.4118 1153107.2339 760543.4918 609370.1683 443806.6736 400407.9441 438177.1653 375557.2748 1492670.19 296256676 TIM Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 4183.7313 10475.1912 16309.6215 3486.1609 34734.5106 9103.2568 13270.3767 3006.225 86057.1266 5242.1198 10495.352 5345.5824 5345.5824 2946.5054 44793.7909 10016.8129 14761.522 8587.8658 21136.3825 7381.1501 6620.5078 9060.9278 5212.2908 30166.3718 2465.328 3615.0231 3600.1773 340777298 chrr Metal Homeostasis Chromium Detoxification Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 43055.3699 6211.6233 30838.1503 99320.5472 15060.0835 312131014 xylanase Carbon Cycling Carbon degradation Hemicellulose Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 5285.6662 4841.8921 4208.0666 3784.7114 23909.017 64231.081 3801.9478 2038.561 2038.561 3333.9434 6471.4557 3921.2061 6859.3228 2654.8019 6588.3085 2921.384 9950.1818 5821.505 2218.2435 4109.8224 3623.3783 2460.5385 28186.318 326947322 adhC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 272988.8789 131183.5878 443105.3806 540654.5024 17699.1762 296189.0255 177189.3655 98563.7018 170820.0437 120078.427 92711.8286 983606.9747 245051.5678 177424.9108 197429.8728 115961.5467 115961.5467 108450.0693 189107.8132 225691.7546 348202.6761 172199.5629 94264.8562 87253.7068 77882.6453 102507.9142 148616.5868 604260.4467 60020.3039 152753.7496 48648.9419 171232.118 154617.169 143425.5865 312722.543 4090603 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8384.3193 26072.9495 2168.1138 9195.9752 4689.4822 3012.8104 63119.5832 4894.7753 4050.6347 6857.0654 3049.8109 3049.8109 2630.4471 13425.9536 4795.4149 4770.3954 6964.3705 11250.245 2168.2887 5050.8749 3628.4132 12630.821 6894.7929 4220.3983 5868.1999 6378.6785 9840.3734 6689.4288 383333706 linb Organic Remediation Pesticides related compound NA Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 29578.5884 24160.4296 24064.4699 34060.2738 36773.7738 28083.4156 32116.8435 16862.4301 24469.0233 30324.0097 130921.9297 33929.3238 485642.0987 33336.1635 131309.0692 60837.2934 38623.3888 38623.3888 22149.6781 45028.939 35830.4114 37236.2676 148778.4414 25610.877 46951.304 26966.5646 45979.4803 27626.5787 87023.6621 63376.2734 44564.4028 35353.6653 26939.9062 32402.2457 70323.1177 64054.704 363417675 tktA Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 506084.0432 26841.2663 112464.2358 27454.2431 24138.8023 18377.582 18098.6765 73270.6688 51489.4996 44541.4113 51821.7741 36499.3822 533431.0127 59671.5765 47435.0237 65473.1703 32322.8346 32322.8346 23557.7191 69549.4973 129824.3033 64179.4083 129638.9722 56048.9659 29931.4714 40371.2221 36381.1682 61074.4246 592567.0823 51798.3496 185017.8739 24588.6925 61648.3183 136923.3508 36429.0046 61998.1772 239937278 poba Organic Remediation Aromatics Aromatic carboxylic acid Paenibacillus sp. JJ-1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 115834.3236 29258.2137 126414.7651 116247.5881 118719.4434 28301.971 120147.8392 101578.3665 50488.8841 288264.4165 167936.2828 104760.2804 2252439.2033 105379.2119 139516.2876 151439.8958 97731.4491 97731.4491 125378.5366 176891.2106 107616.8939 195290.2048 334046.9462 117795.1076 88748.6369 75076.9028 194248.7166 95443.715 316116.8804 160253.1451 163190.9291 69050.1618 100776.0543 117231.8794 104618.0926 156269.0612 83575162 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 43336.1959 41791.0331 29088.0844 52366.6292 33315.0314 26322.8548 22995.4069 13965.2384 17096.2271 123506.3042 30237.2805 5079595.7018 24015.7587 35446.5751 82147.8157 281922.7434 281922.7434 21926.4124 62955.7042 19818.2543 31681.817 223915.7379 32542.909 54462.2245 27846.0011 32616.6311 35171.8646 66426.4279 30880.2345 38083.8793 14831.4546 39683.9838 29930.4314 19795.7058 61515.5965 407376873 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium hassiacum DSM 44199 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 12510.5466 17842.4073 18388.8675 10704.2471 13685.8785 19231.5917 17717.0345 6535.6083 97423.8106 31552.9865 26786.2045 10576.5945 113483.7975 113483.7975 7941.9761 12064.7497 9119.4871 8162.5895 7677.0731 4899.5869 5367.4362 9922.1741 28891.0803 86454.6712 20896.1633 10136.3637 6363.9993 47755.5737 28955.043 9536.5033 47874.7035 83592134 nifh Nitrogen Nitrogen fixation NA Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 85648.9659 7201.3452 28683.8586 5704.8912 62956.8162 71707.4048 11747.5904 30336.9858 27951.9894 20699.1755 85094.5873 21082.7564 86379.806 27382.7876 9176.952 9176.952 12712.0014 49560.4337 39881.0912 13381.2867 20176.1508 11612.3674 21381.0723 10176.1531 12391.1285 93669.6559 40003.1661 41182.0053 85286.3771 11281.3562 14621.7992 12398.9262 13707.2884 35781.4796 78184154 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9078.6916 11516.0533 16345.0993 6595.2764 5899.1344 6043.5026 8696.4302 36638.5115 14244.0737 113106.9206 10346.4735 8540.2557 96482.202 130302.6095 130302.6095 8231.0656 31861.6981 10583.8876 26511.7764 16818.4002 5900.9486 4458.9299 164131.4359 62651.8704 5428.2424 77226.657 14777.298 14260.4023 5282.3053 5835.6328 7846.3426 10580.9076 48167.2197 340027047 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4288.3498 6095.1199 6637.8216 42363.5763 17140.8944 6069.5156 3148.5658 5464.5042 19336.1346 3867.8038 320750.0914 8467.6839 13419.0274 26467.5191 11291.2942 11291.2942 3856.7915 23965.8638 12527.9541 6286.1612 22878.1207 3215.6743 5581.092 26476.5597 3423.6846 24517.7039 10218.7302 29455.5035 4357.9003 7309.3732 9309.8981 4377.6723 7328.7197 295432806 cysJ Sulfur Reduction NA Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8610.0674 31202.2248 2216.3283 5506.6242 2393.0475 3408.3894 70410.2094 11203.2676 5038.1406 5292.0704 5292.0704 3034.154 8325.2084 4982.5958 8874.8262 5070.6002 4009.2048 9626.963 3588.8285 10868.5784 6765.4122 8050.5881 2791.7862 4926.2003 33888.8997 44829101 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4448.4306 18830.7857 11230.8299 5732.4704 2651.8616 3052.6992 3993.8147 2369.761 5434.927 2603.5185 2603.5185 5229.6609 4931.211 3693.2055 21622.0048 7860.8732 23914.8316 8401.0019 11219.5376 7326.3258 2017.2384 3924.8708 5559.5174 115519753 hbh Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6479.8025 4498.6529 3421.9806 2633.0655 2706.2247 6251.7713 6778.9482 5353.4095 105134.1456 5457.6772 5718.854 5917.8664 5917.8664 4874.3114 13545.813 6711.2454 6771.537 12408.5137 10031.3611 5460.7355 4945.7755 9191.112 2778.5533 19978.1712 3976.447 9677.6961 3997.591 5334.2001 7464.0423 4660.2531 11784.5201 260861816 linc Organic Remediation Pesticides related compound NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 8901.2167 17041.501 9347.9169 7105.4529 5036.9025 4368.3373 5599.2747 7393.6366 7901.8091 124797.2895 6404.7764 9319.7639 4481.1597 3585.7409 3585.7409 3438.2971 11968.0308 11474.2606 7801.2151 8720.1506 9775.2386 4025.9974 3520.4666 13021.5084 5322.066 25067.2236 3772.9273 15190.5752 4191.4938 7620.7543 5084.2283 4880.9258 9536.5836 333484264 badh Organic Remediation Aromatics Other aromatics Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 34135.4666 12656.4874 13403.3117 3961.0312 2333.5942 4085.9303 255300641 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 450374.6183 323750.4856 287878.5646 1029541.6722 445797.7656 453948.0299 485409.2036 562668.4866 330677.6878 246160.6704 278827.329 299431.43 6041750.8909 313933.4452 512798.9627 782839.7257 424738.28 424738.28 273156.0279 435392.2516 226691.2686 895437.404 404709.0948 401537.9469 201054.0651 219053.4803 349222.0911 255251.6359 630867.0317 333680.9197 377477.2612 196965.9297 232040.8407 271755.7731 221523.748 411265.3517 407995231 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. avellanae str. ISPaVe037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 27333.8805 66309.0306 8673.9577 8533.1581 5525.1522 26781.2696 9800.3104 9217.8152 12609.7715 44082.9442 170863.3 26593.1407 11082.3787 11459.3347 10600.7582 10600.7582 12414.0638 25161.8901 14413.4482 41970.3277 31246.2665 22055.8847 8684.7704 13258.7749 10305.3092 11350.0674 31307.5229 24827.7175 12033.4773 12403.6101 9063.912 12948.1162 14002.888 11522.1681 310791215 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 10218.3113 12255.9495 7524.0099 3167.8959 5275.0607 7623.1086 3957.2141 87348.1658 5491.9177 140611.4033 3310.1609 3310.1609 4716.8659 11221.8238 5187.2525 4071.0598 7221.9178 82788.5284 3087.9847 3746.9047 7524.6436 3445.9025 15389.8746 10481.6235 7800.2483 3408.1434 3547.6901 6064.9945 3791.7187 6958.5666 254469214 nosz Nitrogen Denitrification NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 11416.8708 11848.1809 7287.3072 21459.6416 8456.1374 40160.164 14281.9087 18412.5922 4801.6384 16995.8213 30883.6694 21078.5106 364186.6202 31857.5123 21519.6915 20145.1398 18375.4814 18375.4814 5737.7631 31249.5249 15697.9205 12022.9181 27862.6479 16727.4345 5522.3854 13286.56 21359.3995 17246.0067 6848.8108 20290.4346 24575.8955 14089.9046 9649.4503 16939.7105 20776.6471 10875.5557 114536977 TIM Carbon Cycling Carbon fixation Calvin cycle Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 5514.6902 11327.0207 5353.3318 5472.6162 2673.7503 8951.8596 5489.4514 2990.1275 3075.3253 702718.2002 3219.5989 381397513 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 323787.1575 11459.1039 12274.7891 16534.8806 16664.3438 76780.0284 19548.5482 18434.2822 29560.003 26782.7919 12149.8838 543203.9448 41657.208 16824.4158 23177.7987 14886.8659 14886.8659 17378.3715 42071.953 17364.3234 21050.0512 38200.7132 34717.1104 15439.0403 19456.0704 27547.7674 16141.6467 66616.9299 32303.585 30128.2366 15417.1969 13925.2387 19798.394 18179.013 37698.2544 307132786 mannanase Carbon Cycling Carbon degradation Hemicellulose Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 31517.0105 12861.018 11976.617 14970.8311 4667.419 10861.0872 61401.3827 4082.595 15461.2906 10918.8006 15642.3537 223577.8664 15590.0992 17068.1082 23846.6489 24824.4457 24824.4457 9327.6434 20373.1699 16907.2455 14312.8119 28287.6081 18159.5466 17538.8354 19138.6749 10665.8183 17923.7769 168882.7176 12429.8983 15701.1513 6400.3492 35837.3424 28825.8733 17719.1859 88060.5708 364003714 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4278.2693 4981.1979 7858.1948 17086.9503 12644.2303 2368.6853 5617.1065 3701.5918 7536.9586 3127.5804 4131.0059 6525.7166 11169.4807 4455.9672 4455.9672 6599.1301 4856.1253 3690.4681 6550.8076 8379.7286 2222.5668 3420.0602 8205.0153 2840.7764 10879.0811 4454.1249 5713.4204 3697.2471 8103.8599 3955.8325 2514.6134 359688602 arsc Metal Homeostasis Arsenic Detoxification Leptospira licerasiae serovar Varillal str. MMD0835 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 43041.6263 1061892.1144 93364.4211 2845.721 4520.9271 6918.4217 3672.5141 3994.0844 2241.2591 2241.2591 10679.648 6498.228 16289.0121 6211.5888 7552.9379 7157.7021 2832.7042 8313.0269 29759.0536 15535.8316 4818.4748 14720.5263 67523811 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 20981.5275 20379.6527 4598.9038 4674.5542 9790.4632 5815.9764 23145.5207 29964.3516 20329.1601 286539.9274 23733.4651 22649.6521 24047.1577 25884.8879 25884.8879 3225.6421 13033.0411 13236.9109 5352.6514 10473.0342 14621.2505 3724.3745 10979.0557 17890.5225 5261.1732 14765.3594 5662.6691 19933.6096 2335.0114 4347.2787 8672.4856 9244.7926 4991.3256 257797802 arsc Metal Homeostasis Arsenic Detoxification Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 51189.564 30042.9228 116079.6889 62153.078 22479.6282 10589.7582 29999.3024 33612.1573 42845.2403 51533.7286 72951.4229 62768.3346 627517.8484 49075.0324 40253.4418 42002.8242 29204.3264 29204.3264 23085.3667 46859.9409 26502.564 39131.0772 61247.3802 49249.4059 24243.0911 30589.7326 45902.8103 33776.7609 73733.0456 42883.403 54257.3978 22471.3028 70562.7409 27314.9899 31308.4769 41342.8007 4105709 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5892.5076 5027.3582 9759.5935 7108.1102 4571.7701 5425.564 2616.7145 3937.7703 4309.1142 3251.2204 4854.9441 5009.8125 5953.5917 2911.2668 2911.2668 4466.6624 11408.2468 8049.4076 5401.9851 8359.4619 9212.8489 3105.8562 3306.2873 6547.3428 3046.2297 14146.5242 5862.9094 9224.6221 3783.5771 6260.2048 5221.8141 4523.7906 8736.44 357014880 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 129709.7621 11330.849 71426.8271 199025.155 52947.0035 42424.5441 582611.2048 56837.4177 47692.0939 102072.7507 40193.9553 79865.3091 1018382.0607 66679.7281 172166.1729 189894.2107 118354.6132 118354.6132 58359.1381 173695.7366 63706.7799 165468.4661 221329.6197 196501.916 171899.7572 75893.7574 128900.3181 111775.189 176543.3382 184002.5062 108873.8144 48125.2893 100526.4028 103721.5028 59178.9907 125599.6273 311219837 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 40279.6979 5426.7824 7059.0709 9515.0518 5183.9927 6998.2059 7878.9633 5112.9908 3812.7652 11316.8364 8877.938 103260.1425 5261.2803 19300.1984 21402.3859 24247.0011 24247.0011 4720.6145 19824.5299 14650.5087 14113.6044 21824.6176 5742.5747 5150.7926 15480.2864 15415.8237 9332.2208 273600.5376 17250.5583 14243.4009 5998.5662 10331.7375 13338.695 29288.6426 11246.9215 195931869 catechol Organic Remediation Aromatics Other aromatics Gordonia amicalis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 29674.6866 71743.5108 16812.4494 24575.8042 45436.0162 14424.3342 35783.8733 34390.692 11116.9579 29459.2946 30724.2438 18514.1584 1078156.0038 39762.7342 27910.4732 20271.7042 28317.9351 28317.9351 14550.7541 30685.0276 21845.9143 22765.6102 44808.783 18347.144 17417.6013 15374.1325 30122.4593 28721.6659 48469.6565 38060.1285 43134.4737 17330.7108 22605.731 26364.7707 13923.6906 32198.3241 329568147 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 13761.4042 15211.3239 16686.5157 17371.1087 16303.5741 12340.3242 9300.928 13302.2486 13780.4399 7580.75 364229.383 22270.6959 15749.1837 12738.6557 6450.34 6450.34 12609.7884 21922.4201 15820.6552 14490.3925 24273.605 27685.6932 9538.6706 7907.499 19142.6194 9005.7971 34325.7918 20053.474 25483.1922 11233.8912 12003.1004 11368.0674 8553.6391 24402.7768 375159761 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 7428.7114 5443.2511 11874.87 10786.7105 13553.9152 7142.3831 4505.0841 11473.0422 9236.3918 3818.0608 285951.7848 14012.2759 9877.9049 5283.3858 5155.3332 5155.3332 10981.5901 30500.7329 17939.8519 10041.4345 17617.1998 18296.2237 8665.4711 12004.9495 21228.3015 12513.6665 42349.6369 6053.8688 18000.2528 10398.6585 14026.174 12463.7145 6279.1112 12345.6322 254271893 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 69589.5362 20135.0225 148035.5969 24943.1109 42836.4643 35523.2966 324815.0727 87295.5219 42994.3074 35299.5808 39481.8985 37342.7932 586735.044 40798.2214 132913.6218 17869.1297 40099.4935 40099.4935 62017.3675 44950.5716 25871.1343 24404.9891 40818.2515 29568.1237 22158.6713 17211.6901 31727.9179 25893.0699 161235.173 43227.6954 54121.1874 266829.7372 35437.0645 20348.9304 32295.5397 30931.9353 110819002 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 20414.1247 6336.3643 288846.2503 10062.4927 86093.781 31117.0346 11397.6337 32088.3479 17908.9707 17404.47 305538.2865 8986.7397 11816.9381 19749.832 32260.6245 32260.6245 21325.3455 28250.9721 19443.0306 28587.0539 18687.9871 27261.1702 128661.0698 9684.0197 21328.6215 75878.5912 88371.2641 22116.0274 22492.9602 14725.7804 11977.4861 15619.4203 14408.0704 19768.0155 242240184 pme Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 13324.2317 16030.7037 23655.1051 13426.2 14885.2961 11693.3004 15260.5575 21849.1694 9244.3735 15553.6657 7655.1478 306802.7505 13060.9404 16130.8792 30401.5457 8729.5753 8729.5753 9461.0054 22685.3163 12377.8276 21045.4449 16142.1217 20630.628 6814.3964 8656.582 26736.7211 7202.6993 29853.3772 17241.6178 19159.0902 7980.5308 8163.2074 15463.9152 9389.3891 98600.5732 302405709 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 250561.7063 1468394.025 267840.5044 225551.2412 111049.6666 1237914.9388 104186.8238 360743.6607 75929.4543 198132.2095 691389.053 236194.0743 2284306.0544 215172.312 198866.6842 1194814.7048 221366.1689 221366.1689 117783.3521 319724.1228 100218.2599 368813.1736 205965.1072 122297.0632 84651.1707 235085.9682 180016.0432 142258.7555 564906.879 127946.192 229089.4985 271554.6797 116995.8212 171920.3516 188688.0529 156099.98 366159757 cysJ Sulfur Reduction NA Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 4424.0113 3904.9172 6714.1998 5522.3627 5404.7267 2508.1351 3108.2904 291417110 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 4649.8254 5156.7582 3119.3671 5375.7243 6563.4419 6362.6173 4029.1714 17426.2461 14379.8636 9347.2444 14677.6227 5276.7523 5276.7523 8626.7165 4150.2302 10178.9371 5023.0332 8295.2782 2626.6652 15878.8392 8887.9749 19596.8763 3650.1553 4202.8826 5555.1365 2502.0585 126731818 nitrilase Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9136.1744 8050.1031 7783.0506 12389.4317 12910.1905 14737.3602 8327.8676 6908.3394 195714.4888 9300.6452 9101.9965 15373.2505 3523.3387 3523.3387 5344.2941 21518.1344 10698.6971 27859.4334 32752.947 7645.0796 5822.1901 22729.9526 46864.9207 93190.4863 16472.6976 11992.7672 13888.1139 10194.7993 9427.3775 10279.719 16741.361 338839223 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 5000.4863 21512.8173 5639.0689 2765.9856 7316.1934 127431.5632 4247.0104 31378.1557 3233.2795 3233.2795 3826.8768 9656.9529 5624.6824 5830.0812 16107.5805 7399.1529 3811.2443 5807.2509 8030.6598 21236.9035 61573.3206 12646.6928 8226.3535 3221.7954 7191.2556 6043.1948 8118.4518 11928.844 111036268 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 52323.2889 17075.5814 81870.6009 40602.3211 244445.1315 26008.6511 14520.509 45233.1258 9820.9181 43555.1549 34301.6874 15672.361 653594.2102 33394.4149 98435.4174 186840.5901 36105.3393 36105.3393 28705.3516 38267.1925 40430.6523 90469.4502 106114.5581 47028.4887 24135.5772 19882.386 38609.1025 23831.8518 75728.3318 48029.1988 52938.0293 21598.5668 24496.1719 29499.0193 16513.7184 45950.6742 269957581 amyA Carbon Cycling Carbon degradation Starch Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 4740.6127 4337.463 6203.9768 82801425 alkb Organic Remediation Other Hydrocarbons NA bacterium alkW34 superkingdom:Bacteria; 4678.7048 958105.3813 5052.413 3658.6716 3658.6716 2596.7019 4262.5174 19807.7034 373548996 mer Metal Homeostasis Mercury Detoxification Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 3941.2196 7378.4663 5129.6147 3838.5664 3628.0262 7999.7705 4670.3853 10134.9902 4026.9717 4335.1036 3840.8276 3840.8276 6109.2034 2277.1252 2528.3847 5727.008 10603.2612 12651.3228 5215.725 2165.6273 8641.2054 2215.0457 66964859 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9178.2821 33620.8246 6943.8661 10876.2475 10262.8938 7580.5905 3321.3135 5213.8557 34876.9989 9145.4825 8971.8427 126359.3008 4120.9807 16069.9583 7242.6969 16295.0284 16295.0284 21807.0067 18492.1404 6710.7171 4183.1745 27481.6249 6155.5859 3518.8204 7144.0058 9904.7564 3342.0298 17300.8754 10892.9763 9620.1538 4018.2341 7935.764 47219.9974 28742.7038 37917.1214 323472939 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 18736.749 7097.6383 9654.4157 7315.8711 7069.7987 4258.1559 8947.41 13836.5686 4273.2784 217386.8202 7806.1317 17321.1789 12688.108 16303.0612 16303.0612 7693.2845 14734.0615 7871.1955 10858.2194 16819.6762 9062.5125 7923.5316 7590.5735 14478.368 5143.7526 27601.9589 12364.1537 13103.768 6049.4508 8433.7615 10914.7938 5260.0672 12186.0161 310821243 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5993.2406 10265.5208 3597.4156 2168.3598 9286.6037 3463.25 109520.6753 5253.7197 4854.6315 2248.5328 2248.5328 5101.4004 10514.5454 7398.8622 6599.4967 9789.5518 9020.5665 3260.6377 4934.0187 7551.8639 4036.8018 14966.9902 5956.3089 8697.0685 5344.0256 5801.2445 4808.9275 5124.0803 7670.049 320150996 norb Nitrogen Denitrification NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 170807.7113 20538.7999 16643.6563 34220.7593 18463.4007 12680.6987 9531.2899 14434.4479 10508.618 37321.1866 9799.6203 299444.2773 20893.7272 26955.6823 17169.6234 21476.9552 21476.9552 21602.8272 19513.3024 15708.7419 11760.6105 49460.5233 23498.2433 42576.5041 7710.4387 23841.2968 15544.603 32890.4756 20701.3133 23320.988 9401.2586 14414.8145 43456.5229 7193.0496 140117.8515 283481772 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 20065.8738 12443.2371 10831.2048 11602.8936 7410.1015 3906.3008 10652.167 22521.9291 17299.0512 169089.7758 19790.9672 100640.4312 11568.2942 9971.2287 9971.2287 8993.2383 23253.7447 12963.8907 9399.1599 40581.0392 9749.2727 6508.2454 11385.1062 14989.7479 21782.9677 26595.1498 16962.6791 23112.4865 6991.1126 11349.9499 11055.0442 21366.4377 16206.6263 283458825 amyA Carbon Cycling Carbon degradation Starch Rothia mucilaginosa DY-18 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 343902.4518 8521.6542 13165.2112 24822.7829 7635.7136 13177.577 13630.8918 23199.5044 14093.0609 19989.8 43374.4242 293686.1365 196877.7406 53542.0848 28552.1493 21128.4629 21128.4629 35452.6502 30007.1514 16806.3896 16731.9262 29144.5196 968175.6387 13045.5774 20574.4464 75742.4806 12277.2905 84362.661 31668.5267 149424.1651 8744.5974 26847.7302 43331.0416 14062.9539 22808.9795 317474364 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 19842.5984 13387.3586 196611.924 16262.8075 16820.2499 14438.1805 251723.6338 13042.4793 17835.7923 22537.4784 76613.6533 602232.0447 36917.8035 28581.1657 29445.2305 23636.4137 23636.4137 14788.1278 26356.2009 22326.6889 27142.784 17375.7049 27431.8927 9854.0014 19771.1135 23013.3118 8734.372 40415.8871 15708.7382 26933.6753 26297.8418 15231.8902 16706.9923 8946.4111 33395.5702 257439257 cda Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii A2-165 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 53298.6156 196446.3738 7559.3372 26757.0729 6072.5152 580748.0198 26886.9254 25248.0628 20609.7353 18752.5016 28399.217 144560.4131 42235.2894 41784.6817 24283.5099 17917.271 17917.271 20514.8323 28535.66 22290.7534 17351.558 71603.2084 15586.3084 16307.3885 13580.8388 20773.4841 9839.4377 50140.9989 21083.3051 25364.9652 11253.2987 19909.9855 17482.8944 19753.4431 94044.0124 38373179 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10375.8378 17654.2645 9329.408 4989.0567 10303.9573 5720.1633 12278.9164 14572.4375 10377.1062 126483.6505 10712.6556 14011.0155 10285.2246 8601.6977 8601.6977 11010.1497 20282.1758 10599.6496 11051.7588 17229.4703 14611.5356 6484.4399 13931.0203 25407.1458 6701.2897 33943.8106 9847.4236 17478.673 6774.3504 12229.2935 11299.815 20362.3721 19753.6635 124266668 fccab Sulfur Sulfide Oxidation NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 14519.6282 7711.5934 16859.8742 2529.0419 20667.3132 9732.554 8444.6875 4320.1383 32629.0736 90738.5995 7705.2411 9531.2375 7696.374 4442.4452 4442.4452 5046.7355 13782.2828 4671.2443 4227.3544 23846.8187 5723.5388 3927.0562 6019.8054 13492.3892 5483.3035 20467.4664 56826.1546 15117.5968 4174.1955 5454.9966 66026.4257 3028.8771 157804769 aps_apra Sulfur adenylylsulfate reductase NA Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 31954.654 14727.8282 13158.0926 16999.3021 9532.0423 13297.2854 20365.5506 5851.4071 15213.8532 24482.1071 15491.7816 294440.6113 16707.9108 14002.2012 17759.3308 14293.1862 14293.1862 29070.6073 31536.6126 16165.9044 23041.2425 107858.5781 20919.883 10673.0758 14589.3661 22113.2341 11590.7339 37524.0362 14219.9362 31182.6298 9649.5067 14822.2179 18913.7144 101721.6545 51074.3659 78185179 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 251141.7069 118952.0962 4844.2654 3998.1706 3830.7056 6723.5911 65838.3149 14114.4721 158194.3352 7305.7298 18205.0754 11998.4112 17242.9822 17242.9822 6437.2393 15667.2377 10312.1484 11003.3103 14607.3259 8076.0751 3829.05 5364.1012 8704.32 17413.5323 145620.4385 12157.5656 14030.529 9323.7532 78510.1296 14190.4742 10594.9655 16146.0469 219548675 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10092.3152 9990.508 22814.2352 4224.358 47396.388 7745.3822 7479.3715 10338.8571 9346.3127 991702.8436 9482.5075 51926.9996 10480.2759 9675.8878 9675.8878 6657.9993 29259.2956 9705.2484 62991.198 14194.6699 21494.8916 8855.3471 5401.8117 9160.5185 18796.3803 73565.8942 8081.608 38868.5837 6550.6086 11160.0723 14434.9671 7343.2755 8932.3155 206601958 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 8179.8789 4690.275 6618.4933 2618.0374 3165.7857 4618.3329 11533.4833 7979.1122 13921.46 200206.5733 6530.9292 4957.1095 58625.8761 5203.8985 5203.8985 5326.7582 9926.2813 7787.2909 9569.9471 9458.8681 10648.3038 3661.088 4491.564 10157.9673 3536.629 14498.8964 3804.7984 11060.2973 6307.7226 5376.4891 10780.4494 3405.0327 11196.0707 118433913 phn Organic Remediation Herbicides related compound NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 6554.6037 6773.3723 2270.361 3123.8882 3026.0859 7431.6291 64932.009 3772.8558 4085.6579 3460.8679 13436.9508 6233.8671 4483.638 8469.9808 15196.3287 3994.8263 4831.7894 6654.3 3539.202 14433.5598 6246.0948 94583.7567 3661.2063 8838.734 9440.2821 4257.7629 9138.9696 56798379 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 20592.3747 33128.7228 21148.8676 7759.8209 26205.6743 5032.4255 16686.6809 16083.1004 5612.4582 30518.0247 24770.599 13879.5836 236588.8178 8183.5894 33423.2006 39184.3772 12478.9401 12478.9401 8122.6563 25634.172 22022.3413 10171.5349 13067.9153 10501.9593 7176.6881 10036.5749 64908.7162 6845.5586 26502.0836 19652.105 20770.9961 8045.9424 11024.7574 7365.6226 7785.514 18463.9582 177841258 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 63036.6101 24769.864 50169.3952 22448.2249 26612.6557 9521.2018 230910.657 27341.9094 26366.6491 27167.7153 48639.1337 46884.2156 414247.9962 43642.3444 266276.9881 18564.8247 46564.3099 46564.3099 35496.2321 104276.9371 34053.0335 35923.9857 51275.6641 29419.6355 32155.9247 24888.1352 48107.3432 34420.3151 94584.4936 64560.7863 48407.9861 28274.4259 95503.7879 30683.8947 32310.8456 29917.1577 402759260 atzb Organic Remediation Herbicides related compound NA Acinetobacter sp. NCTC 7422 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5601.9793 5365.1289 4642.5886 2302.2594 5592.0697 6994.0371 3811.1618 84748.9684 4568.8472 7205.5611 8755.7792 3766.1202 3766.1202 135753.602 12267.4618 5025.0778 10701.9588 5537.8416 3870.433 7793.5255 3147.6991 6216.427 3942.5506 16620.7445 5885.4182 6559.312 4731.9554 4684.1029 6418.0981 5141.6639 6681.9432 327370187 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 181502.2962 18546.5409 39277.4257 93183.4037 111635.2332 352198.5803 150693.486 24817.4217 76139.6183 40801.3568 128164.1708 892066.9636 41701.4587 62068.7451 173246.5074 32043.9774 32043.9774 199340.3589 85167.2756 25987.2177 44339.099 153424.8987 57283.227 64974.2649 30572.1488 45243.6745 76425.5585 124238.676 61114.3432 56810.3729 102900.0718 59094.3965 104408.8059 92523.5651 75778.4083 151562117 TIM Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 163304.8749 20213.9198 31785.5707 45186.4288 11941.5501 22076.0176 42342.5105 10454.2481 36615.3096 67354.0734 57068.6893 854233.3902 68370.7326 33171.814 27658.9473 34215.3415 34215.3415 30663.3841 54068.6283 24373.4192 103176.2219 52103.363 69834.9402 20437.4525 23238.9067 38297.5798 24839.7236 78495.3488 21785.3063 32987.0758 23441.5634 75896.9931 35000.3759 21527.6763 47317.9485 254443231 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6738.2805 3744.8055 4038.0479 4311.4684 2855.5605 114938.8388 6459.6681 5074.9346 13188.2315 5579.0549 9707.5174 4571.5589 8582.8389 31557.1261 5544.0986 5681.7953 4670.7683 10132.7652 5518.3346 209171680 dsra Sulfur sulfite reduction NA Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 5100.4217 1701.2725 2316.6584 4820.6958 6603.2652 78110.0337 4396.4374 5169.3276 11475.9059 3070.4311 3070.4311 12121.5691 6868.3202 4802.2233 5140.2434 2552.0664 2596.7861 5743.4722 2929.6341 9745.0165 4418.5492 12147.8229 3065.3848 5554.4089 8528.9034 8824.549 15055579 dsra Sulfur sulfite reduction NA Desulfobotulus sapovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobotulus; 11426.0834 6599.3114 80880.94 19215.6851 2097.3951 6063.7664 33623.1355 16087.3977 4904.5162 6776.2917 6197.863 6197.863 6157.8606 6078.323 5509.0405 5279.9902 4915.5323 4808.7005 3804.2003 19619.9266 8510.008 3265.0847 26935.8874 9049.9906 5847.4091 5337.7903 8073.2366 6770.9851 2646.9316 5875.968 314971572 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium acnes HL037PA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 298017.7153 3230140.7552 20775.9199 1922042.5468 25822.5111 6108.1102 96674.7693 2162.9433 15636.2144 92172.9637 104869.0211 1274360.9971 47949.4774 18676.4711 34057.0646 60010.4154 60010.4154 538939.3873 517171.0614 21048.07 20589.5101 78187.7392 48471.7057 61352.7393 120826.8457 182301.1372 206889.1387 414440.6472 306060.8441 214445.3739 254315.4761 294082.0729 209068.4946 16915.8774 14681.9175 407362144 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 21404.3035 7877.6242 15290.5717 12839.9858 6686.1787 15086.6727 12382.0979 27166.4871 31533.5714 24170.0266 10998.2749 420868.4452 18509.5704 23603.4208 34577.9988 15629.5058 15629.5058 23316.0678 32405.293 20636.818 23481.3235 24504.1643 22030.9853 25919.6763 15701.8184 26712.4876 12814.553 41239.9825 17478.794 26347.7862 14843.9221 22510.4847 69422.7353 15584.527 29946.9215 312166906 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 23962.3391 46549.683 4473.1204 59815.0056 25459.2789 8097.1768 20115.3073 75700.6906 29946.9826 24007.5861 23617.3142 203008.7081 21226.8726 38983.8874 31153.5633 29048.4279 29048.4279 10327.547 43354.9331 12134.0971 22781.2445 26500.5192 36799.0792 19576.5113 66236.3924 25086.1864 55457.5933 108457.629 34114.6995 61677.9605 16420.6536 27401.6061 41659.3633 15093.0931 25677.6673 118435096 phn Organic Remediation Herbicides related compound NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8391.2633 9451.9568 2842.4378 4018.5061 4909.4605 8418.0621 8372.8499 60240.4026 6024.1782 3246.5093 7599.9404 3372.0269 3372.0269 3108.9007 10251.7712 5591.1451 5430.8489 11385.9614 6361.2762 2977.8301 4662.8773 6200.1995 2902.9775 17909.2297 9410.091 9054.0953 3553.722 3563.2958 6553.6576 2267.5286 5968.3824 157285576 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14012.7392 7191.0032 7241.2531 9709.763 8395.6018 6649.7381 10219.9074 16595.5679 11774.9296 16405.9912 226516.4913 12783.9124 9693.9664 8618.7783 4457.5753 4457.5753 6530.0795 18048.5588 11844.1229 9099.917 9407.2052 17940.9247 6983.9362 4893.2277 16687.2787 6349.9508 27675.5583 13262.9228 15918.0261 6562.1598 9621.0879 6798.336 6751.8818 17441.4722 84388281 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 403045.5096 18029.557 79367.8654 24620.542 28748.5046 7212.9658 49214.9372 81842.2099 32581.4282 53674.1807 67060.1714 88014.0328 1728551.0581 55590.426 270444.1519 103409.041 58220.5031 58220.5031 33545.7053 94844.0624 49234.8358 66722.5592 704985.8806 132456.7247 50341.2115 41843.4395 74397.5646 69042.2674 336657.2632 107748.9614 89295.083 48026.9787 52397.3956 118108.111 72378.773 91659.3742 157084076 arylest Organic Remediation Aromatics Other aromatics Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 66780.8857 45776.6501 7073.7072 107062.719 5123.8922 16888.9661 25759.105 13262.5263 12613.7896 54945.9304 64267.1357 253351.6328 23712.9352 20050.5718 52508.2414 31359.9169 31359.9169 7076.779 57755.4001 20424.5249 27216.8039 76807.6957 18367.1738 31826.1448 15723.4616 20403.7434 54003.9125 61527.0837 20255.844 26028.6311 28076.1183 56414.8768 32570.2954 11202.3424 23524.5151 379719045 urec Nitrogen Ammonification NA Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 6816.6707 129781.472 5501.0605 12888.5241 3585.3912 5435.6968 3510.9326 5902.9046 2970.8938 65947.4399 4460.635 8108.2005 5194.1419 5194.1419 2601.8667 9419.5132 5286.7657 37947.6418 5568.3349 21616.8821 3646.5733 3759.5133 8417.9957 2294.0155 10651.2796 3496.0177 6849.4434 3343.1066 4314.7797 4366.7865 2452.6138 5949.0716 380881214 APS_AprB Sulfur adenylylsulfate reductase NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 5174.6603 51485.1995 7017.9544 2481.8919 27257.4767 29395.8512 8509.3381 16011.2108 14835.4166 82956.5556 17538.0857 18211.2899 8297.3904 6888.0475 6888.0475 3150.2357 25580.4727 7542.614 13553.8686 25788.1082 6393.813 10327.5642 8516.9128 12500.6575 5415.7757 13876.5572 18089.356 9430.6247 6439.9162 6387.6114 5533.6959 5669.6612 14589.2705 159178253 pgk Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 34490.8649 141016.0002 7897.7035 11247.3144 16876.7282 16194.2788 9951.3851 71664.0687 11345.1612 32625.9134 156183.401 22526.684 36527.3919 29469.7431 31928.8332 31928.8332 34301.1408 35983.7704 23172.7436 66830.3984 169968.3497 40622.1414 23148.6046 26876.5397 35201.8078 26653.6808 58626.1244 25547.7845 29700.3218 32730.7176 73264.485 41455.63 34705.0352 38226.1575 67523121 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6299.0886 4345.6644 12999.51 6644.5826 2646.44965 4862.60225 2491.0992 5868.79785 6868.3934 120794.6147 5607.2596 11408.90155 16939.4183 5638.85445 5638.85445 5174.97045 14986.1267 9688.3012 14672.78025 6866.8792 7847.24535 2742.32995 6435.19675 32930.2602 6295.70595 12717.08225 8116.31345 13056.208 10899.09305 3989.5299 5140.5299 340526654 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 71434.312 11355.0499 18727.4616 22994.5094 67814.8026 47209.4532 46499.3137 77737.4036 73854.8758 45060.9226 35323.403 518347.2481 36912.5934 44846.2866 82105.7989 48229.5273 48229.5273 20962.3579 49517.5622 38938.7462 45493.5738 52349.0152 73677.1826 20458.6354 24744.1979 42488.8312 47423.647 107835.0111 39387.9949 63898.5433 30798.3046 53337.9995 42009.1915 61059.8295 52435.7265 114544950 TIM Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 15737.9673 11381.505 9830.9379 5866.7936 14044.1367 8789.5313 6289.2255 8945.6873 15012.9845 5375.9535 264202.2053 12137.9753 13505.2067 11965.6077 6287.0126 6287.0126 9463.6015 18610.1455 15415.2814 16219.4988 17291.8022 18256.6265 7280.1549 6553.6936 15747.2086 7163.8558 60656.0091 13485.4133 19373.8955 12764.3678 8323.163 9718.6673 6607.4361 19043.7722 157146457 endochitinase Carbon Cycling Carbon degradation Chitin Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 47748.8344 68086.1457 10988.1325 8418.2798 495571.9288 16460.6474 24692.5239 35472.7778 14115.6717 13742.5397 277318.7702 18562.9738 16217.2356 16049.7771 21007.4767 21007.4767 10406.2625 32939.4847 16960.2667 23540.9392 32430.5638 23369.2954 8170.7595 10874.019 62088.0479 27036.2911 85477.0348 10429.9206 24889.7131 12177.3818 20708.1573 15006.8835 20812.1254 42842.7176 383826053 terc Metal Homeostasis Tellurium Detoxification Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 34080.0144 8581.6235 8070.1171 24974.9357 9657.8303 13459.8782 34015.1154 16395.9797 19680.3721 24177.2216 464709.9753 14220.2502 37536.4473 19538.2447 24568.3154 24568.3154 10071.2376 27551.5793 18428.9859 32350.7089 47467.1458 64576.9792 20953.8125 14154.8123 22928.5846 19474.1984 53438.9324 30123.1579 27336.1318 13136.1961 18536.526 25244.5641 16650.3538 24044.6288 342316512 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 8722.6314 7525.9571 8758.4425 6805.2844 6385.5723 3099.0562 46958.2024 13927.7908 4725.578 228679.6428 8914.1503 90963.1841 7281.1367 13889.9005 13889.9005 4461.1155 18482.7789 9607.7437 7141.6788 18291.9319 12659.2594 6668.628 5768.805 16110.5868 8019.5247 22338.0364 10379.6848 10432.9997 5866.5239 7614.9762 9724.2919 9761.7372 8261.3671 386419647 arylest Organic Remediation Aromatics Other aromatics Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 16794.2281 585251.057 7103.6691 8218.2187 20728.0732 5657.8643 16515.243 21649.9827 49864.8455 19633.8664 22703.9227 16471.7954 700407.0169 477294.5653 62597.4686 30509.0417 23243.0262 23243.0262 20385.4744 30996.601 36733.0964 27797.507 45903.262 42465.8317 37272.1239 20574.4003 47291.0431 16635.3738 63778.8644 42273.7462 35093.8559 19392.567 19779.0774 47187.8749 18413.4251 28865.2273 384135247 catechol_b Organic Remediation Aromatics Other aromatics Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 42760.2395 42278.483 31868.964 37258.63 7258.4399 20436.966 43600.0424 29004.7627 26196.0466 48317.5701 40540.9267 589126.1988 41560.6045 27573.4548 64103.4062 38906.0914 38906.0914 53750.3627 62361.607 27909.7971 65980.0761 57892.3709 45015.9858 33907.7411 27204.2312 31567.0407 36356.5316 68258.7838 36974.1372 51306.3033 72207.3425 38181.314 31674.3011 24599.633 53096.8246 334295352 mer Metal Homeostasis Mercury Detoxification Erysipelothrix rhusiopathiae str. Fujisawa superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 33887.2072 29694.3715 5824.3834 115805.1926 4482.3624 13397.0956 36015.4536 10198.9119 12787.4653 53700.0861 256717.9456 11237.9476 15376.5763 10209.4788 13160.5851 13160.5851 5664.8714 45759.4498 11864.3927 15023.6805 474049.2694 15782.37 10300.7221 11227.5624 16694.6796 8643.0417 66166.7294 10778.6885 20100.667 10081.7026 18017.3112 29007.2546 15310.5518 16315.9332 224017473 arsc Metal Homeostasis Arsenic Detoxification Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 13631.0217 8403.339 8117.4476 13181.5586 4499.5013 5257.8854 3325.152 7565.9569 14175.4188 5704.3535 255590.493 6837.75 13951.6876 4648.3756 6196.2131 6196.2131 4716.5134 12096.7002 9052.782 9534.8322 17790.1716 12192.5389 5310.4969 5786.8767 11223.3441 8861.1343 29020.7322 5556.8668 19548.3794 5530.9068 23755.6686 7481.2846 6262.791 11318.6467 115374468 pcpb Organic Remediation Herbicides related compound NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 28314.4063 49069.3384 29791.3354 30765.848 15006.036 43946.7345 34297.2789 44717.6587 22389.464 60449.1927 81901.6423 511333.8751 35709.65 130434.1447 28603.0304 26342.536 26342.536 17817.6755 50063.3762 34398.6017 35703.1959 43530.8064 96110.9927 29010.5126 19063.0678 32136.1508 47758.4417 92585.0445 54639.8671 64067.645 86879.8485 32421.5693 35649.0448 16992.5497 30888.4709 226094243 chitinase Carbon Cycling Carbon degradation Chitin Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8104.0019 8071.134 24596.7617 8078.26 10765.4729 9157.977 6584.0146 12524.1801 6360.284 10994.8795 205293.3514 13123.0014 30657.111 16131.1575 11609.3781 11609.3781 9364.0213 24811.7669 13623.285 7697.855 16146.9274 9776.2701 6859.6482 8300.0049 20315.203 5520.9875 29061.8689 17415.1918 23390.1936 6484.9049 11794.5874 24131.4082 5772.6271 13173.3193 177841462 Sir Sulfur sulfite reduction NA Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 364498.8131 213713.3385 270524.049 439503.8575 704504.8274 105135.8935 171471.9238 312985.3091 284425.961 196498.4524 420641.5251 194185.1414 7651861.9482 171628.9434 468075.2695 269233.0522 233969.4277 233969.4277 130455.2114 188638.7154 163348.36 236107.8489 248726.9119 828279.1597 206065.8459 98851.4836 270797.8626 169269.0082 638429.6565 225731.5592 297021.8669 137790.9631 299685.452 182979.4852 130708.5752 154697.4926 229318591 pcpe Organic Remediation Herbicides related compound NA Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 13252.8144 9303.9242 9336.7832 8317.0147 20097.5106 11362.0383 14994.8563 18260.0852 27507.7479 21592.3569 848527.9414 25092.3714 51632.149 30009.2334 19461.9452 19461.9452 13126.5738 31172.7787 15223.3067 16822.2928 13655.3005 17090.5318 10692.6226 20985.591 47428.8724 13558.4439 112360.5874 13794.2077 19227.2528 13053.9338 16522.2638 15152.3278 18576.4834 29033.0895 68510310 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9170.5757 4140.0599 3716.9074 3786.8541 4906.6586 5111.9827 87729.7382 5515.4241 4969.0623 2997.3667 2997.3667 2953.3124 10950.5278 6947.1854 7023.5312 17892.1901 54163.9003 3527.5568 5991.0222 14603.6376 2799.9183 23101.5156 7832.3249 14473.702 4331.9477 6949.9964 5685.4747 4604.6222 4894.7525 121589358 fccab Sulfur Sulfide Oxidation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 4483.8329 3169.6946 3245.2142 6820.3637 4688.9353 18709.8626 167928.9494 3916.7448 4529.3929 4626.4429 4094.3596 4094.3596 3408.345 16450.2668 7604.8379 5784.3388 52198.0682 5719.3061 3502.187 3732.1027 7248.137 3930.6199 16439.8595 9579.4306 12993.694 5322.267 4667.0508 6139.3305 4576.8246 325271563 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5496.3963 73068.049 4882.029 8254.1519 10920.583 4021.8513 4255.7813 3878.1575 5388.6381 6960.6359 4116.2942 95500.2183 6193.5258 5357.3765 8436.5038 4917.1725 4917.1725 3474.1467 7735.0787 5688.3572 9163.3871 4462.4978 79048.2014 5019.6883 5120.9963 8545.3167 2596.8221 12186.9605 4263.1747 15637.3859 2918.5319 7411.1866 3314.5766 2659.5956 5364.3869 222354092 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 8167.3569 13115.5407 10445.146 3651.8518 3726.7984 4120.6751 9743.6174 4161.7555 167524.1461 4695.0974 5250.1184 4000.4461 6428.5411 6428.5411 4730.3174 14402.0947 5989.6712 10966.5396 11758.9167 11705.2926 3647.5555 4148.2675 12007.7854 4054.4191 14367.4248 7488.9425 11101.0014 3067.4716 4449.4405 6149.572 4493.4489 12348.3478 210159617 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 33206.1685 16017.8764 22852.0082 17299.6962 15837.3612 30598.9834 30930.2677 12880.3071 63685.4345 21276.7088 518215.0206 56371.1503 28630.5338 35311.7476 23341.2294 23341.2294 18806.8348 56316.4026 29193.6032 34147.3121 43391.1208 32026.4635 14150.4687 30855.7834 34957.0793 29188.1756 213020.2063 45483.452 50745.7173 30455.0546 17433.8082 24428.471 24452.1783 21025.8767 115511388 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. TY-6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 24186.8279 11031.717 1842498.9076 20946.4174 10290.0446 13434.0844 11049.732 17604.3402 20885.2118 19213.6059 454349.0447 15525.456 40953.6462 33022.4704 13017.0906 13017.0906 14172.2619 53698.7799 29756.7512 34638.4838 23805.558 18161.8783 11612.5959 12508.0134 28576.7535 24195.4218 29268.41 49659.3875 47712.9119 8263.0927 17493.9742 13362.621 11417.3883 68031.7017 238937270 sdsa Organic Remediation Others NA Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 10742.0857 10925.801 9640.5412 3031.6883 7029.8137 19820.1867 4719.5564 101302.3569 13017.5516 9008.4431 4371.5407 3576.1942 3576.1942 2742.5092 6326.8107 8802.3045 7217.6863 10602.9887 2550.3729 4198.4962 11302.349 17979.3987 7210.478 4515.567 6801.053 3550.1136 5936.2883 4114.3039 2246.0394 89099630 pula Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4865.6416 81780.7948 2869.9886 3539.7465 173447.2904 17167.231 5109.0587 5882.4784 2331.0783 2331.0783 120198.3755 5250.355 6858.7937 15142.3549 4907.7892 10547.8005 2333.6198 6187.6824 159045532 dehh Organic Remediation Chlorinated solvents NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 5070.1897 8467.6897 226935208 tehb Metal Homeostasis Tellurium Detoxification Burkholderia sp. JS667 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 79170.5066 43824.066 57459.2098 22586.2451 18720.3944 74715.8969 153450.542 30496.3513 32951.0591 68650.8512 77740.2165 11311189.8216 22497.4409 68079.5354 85528.1509 59502.4476 59502.4476 28299.4734 186567.3592 272741.436 41411.4646 84834.9275 16924.5519 30133.5117 60885.3725 29514.5796 32155.9635 73548.3646 113936.489 41060.8693 32558.8879 37006.8339 42959.8474 36627.2855 238095.7109 77961891 phn Organic Remediation Herbicides related compound NA Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 22175.3235 15750.1183 18296.2352 26693.9088 32562.8638 9710.5917 15980.8561 18028.5322 15442.7017 19904.254 22768.7595 11060.1405 656966.2086 28342.8757 24503.9212 36803.9611 15645.47 15645.47 15599.2096 33937.3 20086.3189 18835.8065 25217.4036 27929.8103 11725.5935 10767.5378 29644.5649 20323.5645 44021.1867 13277.0041 25469.5886 13825.363 13780.8675 15545.9965 13403.7135 386830.3976 333487705 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 48468.2365 83590.4424 6572.092 18132.9694 12427.8368 3781.1646 137492.8519 4245.8268 5087.1609 74666.6399 10168.3548 84262.6892 18908.9429 7585.3791 8060.7608 13391.0967 13391.0967 5724.2731 69232.5816 15262.7122 10363.4613 19036.3983 5456.187 5868.5954 15193.6359 10270.0572 37475.5488 110872.1648 13973.5824 12524.7369 16698.3491 14846.9067 8778.1589 6850.972 10747.2904 222543244 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 7513.5323 25645.7132 8284.1269 19162.8613 6488.5075 5021.5527 5387.079 5392.7087 21264.5832 5876.5468 97433.6217 8340.7023 8677.2682 81013.0342 5116.5517 5116.5517 32571.6719 13594.4363 12504.623 6544.1713 12165.9593 14762.0998 6463.0394 18851.085 5607.6805 14220.9985 12512.3218 15718.5582 6139.3951 7454.4305 6999.0392 2894.5369 19293.7516 300309645 tktA Carbon Cycling Carbon fixation Calvin cycle Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 6090.8141 7283.5167 11740.7694 6492.7179 12615.6786 2218.2918 6900.4053 9842.1922 9486.7549 398671.8297 24413.9273 6990.3868 17208.4216 7328.7274 7328.7274 3235.8259 40528.1795 10538.8709 7458.6737 19456.4555 5835.4862 4850.0444 13323.8365 7127.6612 20099.2426 9609.9389 14643.815 6372.7797 7267.104 11865.9287 8362.9336 8696.869 256690954 xylanase Carbon Cycling Carbon degradation Hemicellulose Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 50452.5651 18222.5663 21350.933 64148.0648 41193.4844 30511.5473 39424.7325 23781.5999 27989.9013 47304.0497 22597.3111 514758.3474 28420.6034 24430.3623 25824.2191 17614.6684 17614.6684 36069.9915 99942.3639 63233.9274 48869.4241 52570.7546 109442.5781 26901.5684 24249.4197 57939.7403 19285.3348 112503.259 23720.1205 62102.1547 26438.8468 32222.4597 42785.599 38390.1018 67528.3122 73534169 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 121879.9092 15941.6297 29647.4578 636770.1472 45206.1421 13200.8877 47625.6316 90963.5957 48021.3108 45012.1578 41391.7802 39224.1439 874194.4138 38469.7702 41801.6102 43623.0875 72017.6449 72017.6449 25570.7254 64824.7446 35727.4748 39828.9812 99437.8267 44392.3353 59883.0012 22447.2671 58875.5036 23860.4347 98721.2814 34781.4798 51111.7641 16109.8281 32635.847 41524.2846 55941.96 52978.2046 261337471 inulinase Carbon Cycling Carbon degradation Inulin Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 177139.4085 109643.7942 9711.0718 4852.963 7034.7491 6791.0653 4076.8627 3150.6386 5650.4812 15463.8319 12815.07 123081.5027 11552.4534 5467.5372 10596.2297 9033.9229 9033.9229 5268.1886 12951.5543 11053.2302 6786.1668 32557.3471 12196.0914 5006.7753 4951.9036 10107.5568 10647.7229 17967.9382 8371.1128 15381.9734 4356.9164 7647.3679 12170.7063 11904.2443 9600.1528 333939122 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5494.1854 5010.3729 4884.1234 2834.4315 87642.7793 5129.8874 6723.5524 6827.446 4362.0969 7668.0882 2374.8575 8653.9822 3669.5274 8556.3609 2939.4481 2998.841 3735.6545 112464117 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20427.3003 10338.7174 41141.0732 33791.2626 8778.641 6027.5059 3475.0838 7126.1414 24874.1774 10542.5897 195033.6986 9547.2661 17677.2824 15628.8984 52864.9538 52864.9538 10133.8336 27734.5997 12412.8954 5839.3574 8712.3149 20655.2645 4297.8999 24624.8212 13051.4431 4862.3094 25010.3119 16801.8487 16277.5948 21731.6319 6218.923 6590.5594 4308.8176 10689.6418 346644325 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 225815.6071 518643.4281 119675.2924 95150.4088 207410.5624 23061.3571 57655.7832 110298.3444 101452.1924 63415.9976 287990.6685 2973046.2297 78828.2587 108842.2881 828864.9266 122294.0462 122294.0462 71014.9371 113196.6099 73822.1545 84736.7158 213630.0211 48565.0113 42101.2184 109299.4408 120094.1671 83723.7242 163173.6711 566081.4583 147417.7311 103645.0401 72201.1984 90018.5362 66617.027 74909.3063 78046442 arylest Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 9064.0994 29104.327 9351.4977 4318.2097 2377.2986 7879.3918 80973.3779 4392.0248 2594.8897 2594.8897 6670.0488 6287.5622 4805.3367 2514.4935 109190.8222 2799.7943 11243.4455 10421.6226 8197.0307 8773.7954 4099.9148 332653309 nitrilase Organic Remediation Aromatics Other aromatics Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 17441.887 10291.175 7356.5457 34520.9842 7045.9161 3870.5327 5534.6959 5528.5077 5363.8681 5363.8681 8589.7256 6363.0934 12429.1507 9542.4706 7991.0063 5158.9813 4307.0821 21532.3339 2758.6356 65665.9256 380692198 mcra Carbon Cycling Methane Methanogenesis Methanofollis ethanolicus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanofollis; 6574.0667 1918.3046 3490.6879 16479.9158 7854.294 103884.0232 73104.6683 6809.3992 4783.4964 5930.2434 4147.8532 4147.8532 3603.0122 12371.5895 8816.5476 5569.3166 12629.1002 5130.427 5600.8918 4499.0941 10468.185 3527.1292 13043.788 10103.9593 10259.5914 3605.5291 6885.9428 6206.191 4024.2175 5566.866 307725646 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 58541.926 166332.8402 127412.8067 23642.3194 24847.7789 13067.2038 24707.5981 36006.6983 29964.8384 35594.363 78474.6993 82923.8431 725290.6297 35354.421 91666.5443 104116.6964 72486.3861 72486.3861 79300.5269 82356.485 49253.7186 80334.0128 47948.2134 68417.2115 53235.9383 33838.9684 43552.6972 44670.9689 115859.194 107101.8161 56739.4657 43448.3114 35368.1579 54208.3545 27643.3943 71491.9669 170738512 SoxC Sulfur Sulfur Oxidation NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 30476.0703 72754.4553 85492.0453 85955.0252 24047.607 16842.6864 23180.05 23752.8152 23878.8363 52785.2326 37986.3312 682936.0498 31896.4228 47400.0691 66765.0345 68401.1454 68401.1454 17325.3842 80261.8391 50141.246 47258.625 66897.049 30621.5408 15867.6274 32530.2615 39882.866 33680.4793 120018.9349 62421.6786 52135.7877 14517.4958 50335.5646 46492.4616 22953.8526 23585.1937 156190313 terc Metal Homeostasis Tellurium Detoxification Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 35901.8743 7484.4738 6783.7895 4860.2926 7636.2804 13024.2743 9171.4725 321416.0518 129585.6692 24197.6893 21063.0266 12643.0876 12643.0876 5493.2916 22730.3028 185982.138 7525.0294 20933.0565 19633.257 9144.7744 11542.6097 16647.9264 21818.5622 39581.1486 35788.1312 23113.2021 9074.2176 18374.0983 12734.0665 10954.2139 12265.4401 359837665 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 24006.7601 386859.7479 5551.8506 11866.9758 5234.7898 3808.5452 17577.7726 8630.945 13275.495 104808.8542 171351.4824 11410.1684 59812.5273 42007.0318 18192.1706 18192.1706 14280.146 79586.6755 8193.1609 14969.5569 41497.6661 5918.9506 19939.9973 19924.9801 9253.807 33078.164 16600.6654 28931.5132 7134.9105 12337.6136 17901.6529 6124.206 15120.2409 83317208 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 9923.9247 3639.4131 84099.6077 5688.6652 3414.0071 10952.4429 9757.5007 65763.4755 5477.8323 5910.3285 3917.72 9290.0094 4285.0829 9445.8668 10508.5582 2984.8285 4035.1919 3279.0901 9455.1791 261359809 Sir Sulfur sulfite reduction NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium albo-atrum; 29032.2072 315186.588 19142.4442 6849.0261 19257.3774 14121.2325 7063.1652 16611.765 23253.9931 30186.1091 294981.9918 19063.7022 23821.2985 35348.8165 34351.5784 34351.5784 65060.4868 58960.7222 15104.967 22914.8084 28736.7143 19904.045 11394.5521 13997.8316 19157.8926 10722.7001 51880.7496 21239.3807 31563.6604 11223.6458 26898.4842 19756.6735 12855.398 86752.9034 237858229 GAPDH_Parabasalia Other Phylogenetic NA Macrotrichomonas sp. GfMG19 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 6988.1432 4220.8874 6817.3733 7783.1995 5845.5416 2706.4757 4495.9199 4867.2822 9654.4877 2529.044 2529.044 18476.6935 9163.0202 19965.2395 11914.809 3466.58 5197.0956 2266.3494 5871.0298 9500.9421 3258.7643 9771.4793 3621.2839 121663854 tfth Organic Remediation Aromatics Chlorinated aromatics Rhizobium sp. MTP-10005 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 26084.0013 69279.4769 19767.2685 7128.0311 28886.1708 33165.4264 23559.1221 23634.5903 35642.478 129358.1118 21970.6068 539154.6984 20725.141 117547.6341 95242.1292 78938.3148 78938.3148 70952.9927 47381.6297 37667.1859 29141.685 40080.6719 28991.4945 58991.1652 49512.5057 25558.9135 44391.5333 107776.2998 34921.7034 51380.111 32951.4866 47398.352 23322.1111 79952.5854 257797.2533 347726895 dsrB Sulfur sulfite reduction NA Desulfovibrio sp. DMSS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5358.507 17436.4159 13745.1309 10256.7254 3368.7071 8520.1121 4243.5788 6824.4253 5843.4889 3661.5483 143437.9512 7773.1761 7462.9259 4460.2021 3578.0189 3578.0189 4523.9438 11695.7713 16725.3344 6355.8663 10924.1913 9004.7967 3498.5569 7838.4248 10829.7284 3264.9589 16836.6192 7469.3302 14366.1231 5608.2845 10194.1206 17047.9354 3330.2685 13369.0394 29466062 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16889.8054 4756.599 5330.0773 18786.3448 18786.3448 6399.5318 5918.256 4248.8032 15257.0732 4300.4082 5997.3576 2275.5089 4879.7424 4698.617 318042842 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 61032.9756 4458466.7145 1400189.6372 6039.0189 12463.8861 3715.5166 8234.9605 4186.7353 10832.2797 60919.4291 8517.8741 187204.244 10945.9479 10128.0236 18810.1124 4464.5157 4464.5157 11462.7363 24961.7218 9384.9707 22896.618 14634.5782 12076.4155 15571.9619 7151.241 14111.0072 11094.6819 16252.3486 14826.6553 28073.6131 5623.4887 26334.928 7972.8598 7184.2513 925844.1797 111279206 terc Metal Homeostasis Tellurium Detoxification Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 223414.3154 17688.7112 16431.259 22906.5177 9950.4809 30330.9964 46968.3685 41566.6608 12272.6808 18787.9542 23644.8133 25619.4064 520402.6111 23278.025 23727.9168 20074.915 15482.9089 15482.9089 15221.3166 32045.1044 18391.8816 83306.7224 28079.5856 96064.9336 13440.2672 12196.1321 28376.3412 13620.5034 44066.1738 11857.9777 30437.8175 24102.5008 14412.2927 23195.562 11355.8732 40657.5683 99037234 tktA Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 53701.9508 15464.0946 18312.3857 10276.2963 36300.5721 24583.5075 9047.2635 22279.3997 19285.8464 15120.0973 455303.0528 41937.9969 27039.1549 19689.0717 29656.0921 29656.0921 14550.2522 36519.0644 68601.9617 24994.0454 33183.508 24902.6847 21095.155 17542.7115 25608.8741 9484.8971 55665.5651 24816.0472 31109.0297 12227.135 16761.9838 25378.3916 13329.0228 65780.9563 295096817 cda Carbon Cycling Carbon degradation Starch Enterobacter cloacae subsp. cloacae NCTC 9394 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 5275.609 10278.9724 14247.8176 4278.3044 2861.7037 3876.7067 68981.1041 5946.4534 5425.2083 3292.8898 3292.8898 2541.6585 4931.7304 5556.2151 10001.4014 2245.2816 11375.2959 7063.7719 7499.8971 3014.99 3302.4952 6687.7176 5903.7483 118470979 alkk Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 73653.7914 61904.1938 23315.2168 29639.8155 6605.7309 85381.4932 90587.0184 56039.9723 34179.585 177338.3848 64307.7241 884843.384 76743.361 44748.1679 143184.3966 46936.307 46936.307 43650.8369 66527.0757 65036.4435 27599.1012 157240.6255 50925.9497 50066.5547 46037.7419 31425.4777 48970.223 111722.2112 162037.5426 52933.046 39330.3598 42435.1368 58590.4852 74224.1928 76676.7864 218224637 ara Carbon Cycling Carbon degradation Hemicellulose Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 5351.9237 278017.5265 11003.9344 4987.5553 3748.6832 74440.9342 5093.2149 6784.9612 2527.943 2527.943 7566.9239 5308.7057 4718.601 4576.4165 2451.71 6100.4188 26297.5009 53357.3302 5014.0422 7651.2362 3242.569 5119.9995 2664.104 115519091 exaa(moxf) Organic Remediation Chlorinated solvents NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3927.7664 4501.9413 7414.6096 3631.096 6203.3046 5381.6547 4339.0878 6268.5363 2203.8217 2203.8217 3502.1789 8199.2922 14005.9663 6120.647 5908.8975 6543.282 5017.1597 20990.0454 2202.8335 9897.613 4949.6497 6537.4912 2136.5897 4387.8358 5458.0516 3232.7312 4414.4551 26985946 soxY Sulfur Sulfur Oxidation NA Chlorobium limicola f. thiosulfatophilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 7410.8649 3575.068 4329.0234 10039.5017 3506.1073 17022.7661 70394.164 7648.3162 4764.1571 2036.1928 2036.1928 3635.7246 12692.9847 4976.0966 6163.1778 5178.8518 2313.6345 2657.4137 7051.9941 2806.6843 10082.0119 10594.3324 7248.4709 2836.6806 4337.7084 19442.1566 3120.9686 5873.7763 147886054 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5308.4445 7962.4891 2419.8558 3386.1746 5049.2145 4922.7989 5789.8882 5741.4823 3436.901 7542.735 2376.0273 8694.4508 2353.476 7361.552 7690.9533 2721.7822 4523.0998 2820.4411 333953919 amyA Carbon Cycling Carbon degradation Starch Cronobacter sakazakii E899 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 8840.8101 20270.8167 10789.7824 5988.0085 3425.5516 2270.5492 4181.4452 5272.3317 5372.9559 93341.7689 5731.5979 5682.2596 6605.437 4761.0248 4761.0248 2660.9762 9667.5875 10575.0051 32383.8681 20556.9693 3066.1219 40578.5536 9724.0028 131359.6859 8841.8484 9164.0043 23820.4765 1809.4826 6634.0296 5507.9117 5682.1063 111610916 urec Nitrogen Ammonification NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 46966.8383 13548.7725 5940.6849 39206.3036 137402.1733 11446.3504 17024.3104 11396.5836 35545.8793 16857.3857 15292.9703 476434.1127 18324.7517 20479.3343 17825.7337 15433.3007 15433.3007 26216.3234 61361.8723 16931.188 13343.7853 64937.9788 18048.3511 22074.131 16277.9444 31593.4506 19825.2246 334951.6498 38371.1305 148765.0108 11697.9815 46342.6265 24882.0239 12120.869 37867.3052 392847048 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5494.3437 8731.734 2652.8335 4100.5225 62735.2524 4725.6835 6344.6996 5180.8573 5552.9108 2897.2215 6073.6586 11332.9989 6294.0329 8234.3145 2558.6726 4062.6632 3429.9877 212706782 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 14611.1146 141290.9945 12864.3962 12659.6441 27734.1369 14702.2295 78696.202 10874.2473 14837.7365 32172.0186 149080.6393 9309.1233 16101.9334 13602.9075 12930.1128 12930.1128 6337.6673 53407.9683 33700.6953 14541.0235 153931.7581 56321.6544 27484.6977 15625.6375 11992.6556 11264.086 31934.3175 26591.298 20429.0536 10811.2285 15857.5714 16867.614 28149.4911 10410.0116 365815767 ppx Phosphorus Polyphosphate degradation NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 25504.4633 38057.328 6600.9203 64972.8533 12626.2947 28147.9952 26190.9198 46785.1991 11617.7967 31593.4985 31501.743 7731920.1951 10370.2014 31094.8056 28246.9143 27455.5515 27455.5515 18551.969 35666.5778 20051.3771 38809.7635 144790.9574 24410.941 11737.4919 20002.8985 20377.4268 24107.7461 58111.0668 37897.247 40889.885 13788.0482 48699.5329 55981.8521 41262.5949 64924.522 319743757 FBPase Carbon Cycling Carbon fixation Calvin cycle Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 28489.0825 103534.5216 30875.553 6966.3257 20225.1506 27579.0166 24853.8557 16628.5242 7917.5842 15181.1484 17982.2139 317839.0726 33188.0864 88935.5195 12339.3935 18470.2138 18470.2138 7598.251 22169.8925 12998.867 18021.8872 15369.7723 40263.7439 8856.9654 26573.1473 23620.6867 49373.5359 53690.6085 15415.0691 14980.2508 8412.1176 35363.2564 9067.2848 27207.2062 13307.3637 84517005 pcag Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 43019.6171 12659.9426 43086.3922 16881.5121 23060.7508 115402.2395 54722.451 24068.4431 23578.165 280705.8069 100269.5057 632676.9215 40718.004 252856.8643 70534.5185 40646.5049 40646.5049 47582.8411 35079.3091 45491.3434 29988.3292 305628.5217 28642.0477 13589.4542 21445.3852 39952.4542 61550.538 76053.2481 58710.7988 47682.4156 24982.0754 23231.6496 28137.8185 29235.7696 40264.0058 56680009 alkb Organic Remediation Other Hydrocarbons NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 16209.6646 12262.4085 5979.0164 6045.9981 6631.5013 10704.771 10954.771 26942.6104 162791.9259 9973.5974 14250.038 7491.7355 9174.9165 9174.9165 9570.1944 17715.7161 11499.3348 10071.8682 14306.4213 11248.5539 6440.9333 4753.3634 9048.3689 7573.0972 31174.4248 15247.0873 18969.5061 5248.92 8289.0922 41691.8072 4831.6939 14823.0257 294340408 ppk Phosphorus Polyphosphate synthesis NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 5890.8225 5434.083 4479.3292 11341.4939 2782.1852 9319.2871 3506.5259 8821.9957 5323.3298 5138.8428 3061.1208 3061.1208 6367.7664 6587.5703 3150.0724 7680.8439 8579.4003 5120.435 6093.8381 2230.1591 3339.6364 300390277 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9512.2676 7793.2348 5494.0599 21456.1547 7689.5954 4719.115 6475.4427 2003.6666 27899.7079 14866.7042 8865.2596 180749.4471 13647.7323 8603.2714 10036.764 9827.383 9827.383 5053.8174 12585.3213 11715.1068 8846.7863 7227.617 10358.2532 2486.4809 8722.2071 16439.6493 3926.3772 21014.3977 19679.502 17522.3561 4598.6248 6540.2602 7884.7115 4893.0221 11703.6573 358047028 ppk Phosphorus Polyphosphate synthesis NA Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 16299.9847 35438.4906 8122.1952 7040.9812 8979.7535 4249.0195 13833.4258 21644.6501 4908.8065 218202.02 19855.2984 12744.73 17867.0202 7221.8447 7221.8447 7599.1783 31285.8847 13350.241 30121.2596 15693.6964 15299.7696 5985.7677 8500.5318 14362.3542 6328.3882 21833.0776 7063.7613 13892.6355 7317.3573 12820.8242 7742.8201 7287.9574 15781.2134 60476324 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6651.4271 4447.7605 3312.0413 15791.283 2135.7605 2135.7605 9035.6773 4877.551 4849.8901 2410.4156 8041.8267 10127.8428 2838.7793 5583.6271 6131.2725 2702.7658 116070689 Sir Sulfur sulfite reduction NA Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9756.8056 10353.403 6933.9725 6066.7938 10152.3074 44753.2205 13809.7541 11537.2606 7511.0792 591044.9132 9265.9385 17495.7604 8200.7663 7142.4792 7142.4792 6685.5174 16665.8229 11984.9248 10993.7554 41323.7085 12827.9579 6947.1771 8863.2232 16280.3824 13312.5956 19109.231 10242.9438 13093.0072 6722.0645 10850.332 11532.9404 7418.5087 17295.1722 60476255 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5290.7736 14909.143 5782.1339 3368.1761 2546.4908 2577.8568 4110.8893 4232.3606 75563.2616 4891.0094 4278.2442 5757.9622 3982.8749 4601.1776 4509.6229 2994.2966 6316.3752 2447.1307 3241.6583 345897105 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 35929.3867 78256.7539 109337.454 20930.0409 64170.9037 15614.6853 33560.8781 64162.4795 47573.8693 33687.6115 51470.8334 580398.3226 28073.5214 70267.856 60176.9277 50611.4891 50611.4891 19955.5874 51407.3289 24707.7091 68498.9717 135264.5384 31561.3141 136043.9758 27005.0592 33394.6104 22883.9819 171013.2775 187390.0971 95415.225 17690.2784 31692.1453 50200.5041 64790.2188 49516.1 99030638 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4108.0192 6457.0957 10234.6846 4286.9866 7792.5312 4402.2795 14212.6999 14212.6999 5227.7112 6710.8149 5158.8905 4763.4795 4468.5234 5453.9084 4098.9692 12676.2234 26372.711 11054.833 5893.4935 260938244 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 9606.4171 3709.74 3831.1975 10864.931 4705.4168 19752.0396 106765.0217 7860.9838 3961.4975 3169.5799 3169.5799 3520.5792 14604.9978 7211.2654 4165.8033 19805.9617 6840.5003 4088.9904 3829.691 9047.3155 2815.5051 11541.4647 7183.6911 6552.0313 4735.0597 5676.7375 3372.4755 2870.9355 6821.3042 374312637 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 42551.2233 25036.0117 44569.113 19734.1182 7077.1692 24134.8687 25129.3747 31284.4676 36060.2656 49759.2776 20018.2738 1431407.4314 39584.4087 35815.5007 42022.9702 21246.1454 21246.1454 22877.0993 38864.0212 52700.2459 38139.8605 45158.3177 43765.1788 20929.9956 24787.4287 46401.7417 22810.2202 61065.2281 80476.0577 35018.8569 16349.3409 22606.8654 30371.5982 20954.6024 36925.4736 146192102 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22085.829 7779.4832 25479.4647 26394.1294 10332.5638 9393.9852 35268.1714 11682.4691 18444.6455 21670.655 12272.9072 369037.4486 20314.1072 39352.4141 21526.3529 15043.6422 15043.6422 19674.8176 27510.9437 9979.1039 21733.8694 41280.4082 10013.1153 8122.7853 20901.5947 35561.2697 8134.5756 34627.9012 15176.9493 24277.8712 8176.2727 52570.7271 34151.8758 6035.148 13650.4746 118431474 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 99909.4745 16909.1084 49483.5923 53898.2962 59081.9019 25591.1653 34860.2245 32530.1386 20695.8199 35244.9439 46013.1111 27644.677 1187904.5533 62722.8623 46092.885 41558.8268 31093.6141 31093.6141 33332.4295 62138.4979 43778.0859 55053.4894 72259.3373 77837.7369 25221.5401 22165.4318 52195.6567 27941.3912 112265.263 51712.4462 58843.7511 22840.9251 30478.7901 41927.3612 25221.9522 77684.6846 320105654 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 23578.5634 4805.2259 7504.0172 4917.0205 2909.2447 3659.1802 48544.0884 9776.2422 9192.3176 127043.3809 7745.1263 8529.4966 12299.9112 5947.3418 5947.3418 4144.8467 19091.4417 8072.8356 7115.5251 7982.169 12236.1091 4502.8228 7411.2571 9497.0062 6254.4219 21743.8897 8903.254 12798.9716 4136.0866 6380.6692 25862.4216 16691.9314 5957.8854 145963521 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 6840.3406 7306.1367 6742.2664 5124.9562 7888.4414 6877.5376 7830.7917 15033.791 8704.6586 172217.3724 8000.7258 14451.5065 34456.2582 8614.9503 8614.9503 9544.9223 18742.5646 10882.7869 42534.3727 32623.1943 26342.3006 8006.8043 6382.3935 13184.7123 10290.281 25366.7395 5991.8799 16843.965 7531.5888 11757.1246 12524.9984 7499.1298 13167.2745 291245558 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 4261.6756 5761.4843 9168.6662 5226.5013 2811.8039 4237.2748 5753.9621 6816.9848 3733.8711 3466.4444 6324.7591 22086.4859 4591.6588 3699.063 71915073 cellobiase Carbon Cycling Carbon degradation Cellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 27213.0107 60494003 amyA Carbon Cycling Carbon degradation Starch Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 6975.9931 5847.4673 6075.5687 4586.8773 20381.2891 113026.1939 5276.0418 4532.7584 2324.0422 2324.0422 25935.1258 4801.9616 6284.4774 5847.857 2564.6041 2670.0987 6791.1935 8534.3308 5271.3737 7264.1471 2637.313 3392.0226 4649.9838 2671.926 16627.9548 99083201 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 15802.9116 3954.764 5815.879 4213.8585 5775.3475 5054.6625 4261.841 2448.7245 4747.5159 124515930 mer Metal Homeostasis Mercury Detoxification Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 12096.4527 28960.8438 14185.4499 2294.6762 682176.3305 4858.2038 21702.7199 24709.0943 6408.6677 6408.6677 3719.7421 15819.3552 10460.3078 4792.6214 157404323 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 15187.9903 8172.2822 17936.9936 47140.9919 7012.017 11654.216 6929.0269 10493.013 16117.5387 42075.7448 242017.4154 17326.1889 45939.4621 10868.501 7316.7546 7316.7546 9631.4808 25362.4901 9033.4627 13764.9769 20194.9919 25611.2254 8177.5938 12194.4542 13783.4955 15486.0444 29980.8981 6660.6366 18236.7815 9601.0797 12304.9704 48276.7596 8704.5501 120953.7901 114543919 rubisco Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 20419.0026 7643.4062 6715.3917 7742.2147 11957.5368 31239.9437 24367.2676 22646.5467 15186.776 23830.5274 46928.0713 190357.6859 5851.0183 7104.2673 220602.5161 94356.2971 94356.2971 8444.0023 20291.574 14072.7004 5763.4189 14571.4945 8589.3849 10109.8314 9569.1724 9371.4839 10240.1382 20872.3234 7768.2288 24816.1038 3229.7547 9930.3289 11985.5777 4795.5421 27896.4501 156110458 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 21768.006 9443.1886 10540.3684 7916.5302 15514.4088 3412.3956 19456.2451 44656.0932 14892.1654 343392.3501 5750.2952 14334.7695 72979.3566 7279.2628 7279.2628 8037.1256 12119.6178 15199.7086 19715.876 11845.5362 20460.2856 10570.9375 11924.0486 36788.8549 14580.1512 78961.8915 17570.3454 18686.3096 7779.0397 17825.9876 12584.9319 8446.8236 6026.1721 350552340 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 15922.2271 12001.3318 29174.7475 127266.6718 26533.9087 14730.1272 528072.0714 52222.1015 19518.1144 10763.2015 34187.3362 25995.1642 1054141.4748 18549.925 17959.348 27962.2585 17957.7334 17957.7334 7000.7028 28715.4845 12102.3165 11944.2513 37685.9026 17275.9338 9396.8286 16298.5375 38698.9791 90779.4617 168025.7121 42668.8791 29890.7615 20836.2338 12477.4318 23859.7749 12967.8973 23004.296 404258897 amie Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 9145.5895 22202.1788 21060.1653 4057.9528 9810.0693 9694.5459 6425.8133 95522.4273 8103.5776 8218.6261 5963.1943 3480.4324 3480.4324 7131.6369 17833.9036 9801.0896 8143.4719 9244.8267 8153.2295 3998.0739 6120.5231 8873.6334 4552.3533 15212.7063 13388.7491 13317.0003 4863.5873 9134.2823 7369.5899 5350.2629 12116.6757 47601232 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4009.6567 11639.9078 3407.6414 2665.5144 72863.8521 6699.9323 3690.2897 4332.7568 3833.8014 2424.658 12406.9532 3621.8262 3007.2762 2686.3077 6076.4024 88643101 dsrB Sulfur sulfite reduction NA uncultured prokaryote 91676.9474 10810.7371 5547.4669 5156.3691 7861.6268 6256.6095 20016.7716 6326.1182 160037.6833 12258.8 9310.2791 8687.8789 12588.7466 12588.7466 2933.2705 48241.079 7068.5953 5732.0474 6258.5575 13980.9501 12761.8098 3115.1787 9303.6966 3631.8729 17263.6156 7272.8106 11146.3688 423517.2851 5491.1033 6186.7678 3248.2106 11020.9356 61394236 hcab Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 49717.6964 22392.7571 13902.3862 4949.4254 26161.9763 4061.3907 8042.5181 10728.401 6721.38 915398.7518 17846.718 24758.263 4779.3353 15010.5732 15010.5732 3709.8151 12260.1395 7885.0268 28145.882 71328.3813 5644.8426 6158.4189 9713.4514 10593.1747 154168.6626 10664.0909 15128.0509 12263.0712 15882.8257 11313.118 8284.7796 6386.779 146310103 amyA Carbon Cycling Carbon degradation Starch Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 265416.5964 12354.4028 30899.6435 18216.1717 10313.5975 19931.4948 44275.4751 24072.0151 25334.4021 35856.3338 70791.8936 1100211.9502 37683.3967 27605.2896 26605.2928 32504.7573 32504.7573 18441.1481 36051.0455 21927.6899 34910.8522 34555.0273 45714.2857 15780.6912 13913.0864 31423.9238 18570.4714 53810.1726 18586.1066 42483.5965 24200.8904 20106.6765 35445.0354 20006.7632 38102.4349 227338554 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 13319.0852 41635.4242 11788.8676 14627.9934 11503.4951 19081.1492 3042.9499 5515.9349 5726.9242 5810.6901 20461.3778 126068.663 11097.1597 9027.8825 12153.2569 12636.0038 12636.0038 4133.7628 5923.4679 7011.4904 4142.3157 5748.0737 3811.392 5965.2641 400983.3889 6067.5545 23198.742 7725.9011 16605.5798 5845.3425 7259.2058 7705.5271 2001.4913 6847.8381 379710525 alkb Organic Remediation Other Hydrocarbons NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 17533.8347 16643.8217 60313.581 13957.2537 8045.5268 37743.4939 16263.6143 9809.1683 22566.387 27181.7338 19530.3403 283450.1202 36146.9235 27402.8431 19143.4125 24987.4201 24987.4201 13323.971 27081.2898 19777.3221 20546.8351 15749.3094 29110.1099 11953.914 17657.3777 40171.9123 14850.7499 44820.625 22267.4971 37850.911 95285.5994 15493.9544 11731.3595 35998.8157 34553.0128 365865492 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6190.4344 4918.0094 3617.5315 4081.7614 5723.1328 3453.7797 8411.6994 2472.9815 2472.9815 3519.8148 6535.9226 6877.4861 6745.4662 6249.5179 10160.2585 3019.4378 6117.3267 13250.2347 6668.0396 8917.2478 2626.3076 4354.9161 3622.5473 2369.9197 7647.0591 170946644 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 451781.8955 16958.0597 787364.4305 26847.2076 30849.6517 9965.4125 94698.4884 38693.257 68116.9553 30656.6165 240331.9871 49395.3308 880474.227 35578.87 39267.2468 286762.38 35880.777 35880.777 23559.4299 75208.0935 39502.4603 134213.9236 194174.9508 47386.2011 28651.297 30681.6614 35634.2089 43878.1694 77829.8147 65126.9908 73144.4334 24449.0421 37286.8636 63170.3925 39782.8844 38451.5494 171913717 atzb Organic Remediation Herbicides related compound NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 10829.0794 37432.4352 6024.515 5436.8445 4406.9771 7968.2955 166390.0596 4299.559 8698.9924 6334.2356 6334.2356 5203.8944 6935.4914 8942.3414 4411.4416 8983.726 3349.8044 3335.2326 8555.34 3086.4593 13209.7362 6910.2383 7434.2278 5392.3393 3640.6153 7580.2946 402492085 badh Organic Remediation Aromatics Other aromatics Rhizobium sp. CCGE 510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 10196.2456 10814.2643 10180.7413 12365.7149 5954.1687 7103.9942 8583.6299 16049.5066 13735.5183 199911.2771 20649.0826 21578.9317 7141.8977 4381.2542 4381.2542 6022.6062 13976.2932 14356.7538 11656.6595 13687.3596 16151.4228 7316.8754 6745.3649 16737.9445 9036.1928 26462.7782 12068.3235 15121.5997 7883.9095 7961.2563 10671.652 10634.4786 11195.3865 359767191 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 7938.909 2890.9536 5375.9613 15792.0406 5239.5181 5874.0546 4241.1348 223407.6733 5840.2997 5271.7737 46938.2223 46938.2223 25536.4364 11444.5542 14298.9394 7820.1645 7352.1722 6309.1794 4064.6399 3243.9082 7130.9849 4085.138 17011.9345 5188.5693 11817.6362 9387.2712 5997.5475 89805.3527 7776.0012 115805.475 334091991 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 9247.2158 10319.0754 50721.1233 4770.1472 2530.0809 5805.5234 3989.1717 5175.4391 98888.3762 5649.818 8564.3001 3535.221 2534.6697 2534.6697 4174.6571 11203.523 6656.7576 6978.133 8557.6549 15301.5985 4038.5656 4081.8634 6738.7498 5222.1547 12146.038 7085.0894 8778.7636 3770.8642 5635.0973 4438.8917 3286.679 6982.9542 371940164 chitinase Carbon Cycling Carbon degradation Chitin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 16245.0146 10263.7856 11136.6401 16229.6202 12933.2981 4816.4321 11011.6983 13874.939 9118.093 13074.7375 18634.3418 9420.7619 12110.5779 18369.3869 21340.4127 12738.4184 7029.8313 7029.8313 13251.2141 21617.6545 15426.023 15003.318 22073.1112 19292.5319 8557.743 8477.7446 20229.0511 8362.4472 32875.9013 16068.7124 24877.6469 8283.9077 9551.0604 11926.3234 9272.174 25457.3519 339498729 pula Carbon Cycling Carbon degradation Starch Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 84068.429 13267.0738 84037.8653 5049.6542 12333.8714 23883.2585 7833.8222 17485.2929 41784.8056 49021.6354 278011.957 21765.2296 18376.984 34503.0655 19704.408 19704.408 19272.5235 54539.2554 12474.9663 50219.2739 279736.0026 75626.9393 19848.2166 34944.7741 18853.2805 69396.3902 29474.4611 30639.8314 34615.8175 9098.4577 28342.2978 24182.9328 87423.12 25292.5133 70982754 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 107200.7558 25440.1702 22667.1864 26081.4327 131727.0021 371739.0697 14376.5725 24997.4219 14416.4062 81200.9952 49702.6818 42272.1944 1071360.479 179673.4361 57388.1741 90470.4361 40596.829 40596.829 23015.7031 100337.9037 48695.4339 36060.2291 39752.824 34227.1588 23871.7585 31302.5944 236161.8559 31486.0955 121059.118 42928.647 122348.2989 18830.5533 70552.4435 89931.1938 25699.9374 24198.5392 44903459 pcpe Organic Remediation Herbicides related compound NA Sphingobium herbicidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 255264.0313 90498.8483 20446.5358 899257.7524 18017.2906 20473.4021 69751.7326 16347.4077 55602.4284 58078.2656 60890.8409 1065403.5697 106533.8639 205563.0071 83992.7096 119178.1321 119178.1321 25579.8492 74462.3082 53223.5747 80156.705 47476.9842 44108.8852 25452.9029 69667.8411 36917.001 140405.6608 107174.0299 61872.2818 160798.0817 67045.9987 54838.4125 58438.8692 29686.7429 76427.3028 224951066 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 4061.3056 2637.0151 40076.2901 2739.0674 5031.0504 4031.5179 2393.0495 2393.0495 188908.1876 12569.998 7734.3888 4903.7648 3681.6016 2991.7729 4898.984 9087.0521 7435.762 1733.681 2915.6368 3658.7093 2233.3972 5667.8491 158423027 amyA Carbon Cycling Carbon degradation Starch Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 13252.7387 31101.2034 12106.1575 7162.3435 3769.4122 6338.0324 38531.7735 9301.4673 152696.2139 7036.5583 10309.9029 47747.1891 12195.2002 12195.2002 13987.2484 24535.3604 30318.4461 9712.7989 17351.1663 7064.5993 5897.9683 9591.0786 15054.5478 3412.0256 34352.4893 15344.7459 16299.1882 3737.9828 10378.1739 12785.3625 38230.5322 12635.9435 270288710 pmoa Carbon Cycling Methane Methane oxidation Methylothermus sp. HTM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylothermus; 33575.4264 33397.5692 6074.3562 10228.7973 16837.0045 10710.3426 11243.9344 6954.5009 11830.7751 14815.311 6237.9611 252940.2602 16293.0231 16093.5682 12305.132 8033.5028 8033.5028 13884.927 20506.3133 16843.9113 20608.5921 99859.7169 22661.1912 12706.5779 8581.1057 27021.2919 9455.1693 32935.1709 14140.3989 20450.3012 10008.1856 10091.9725 12705.98 8588.0748 28802.6988 225572024 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 29518.8638 23377.81 42363.8727 15520.2073 16364.422 15664.0663 17769.3446 11477.9963 22617.3691 35415.4018 14689.0104 581035.4397 24252.053 30548.8337 20008.5834 28684.0276 28684.0276 14589.673 40391.5751 24871.7358 149300.1637 45609.752 44858.9508 11540.4613 11893.0431 27912.5802 10062.5532 48361.0328 30151.6596 27287.1561 15948.9416 24101.2624 17479.3724 12806.0088 65944.0926 306493026 amyA Carbon Cycling Carbon degradation Starch Peptostreptococcus stomatis DSM 17678 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;genus:Peptostreptococcus;species:Peptostreptococcus stomatis; 10566.2308 8990.0394 6766.915 22161.4265 5753.1178 9950.3627 4888.4547 10031.4645 21405.1393 4473.3154 184856.5792 12998.7705 11379.0647 7934.324 3639.1111 3639.1111 5780.7882 18772.0481 12688.2298 19954.5914 14446.9306 16046.1094 13961.1857 5732.287 16031.4944 5707.3703 30262.8805 12635.77 15174.4456 6767.7743 8423.62 7864.7835 6043.9051 58360.6142 269790966 ara Carbon Cycling Carbon degradation Hemicellulose Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 162421.397 62462.5065 4804.7862 16660.3354 7449.7191 6260.9232 4390.0863 7067.6631 11140.659 7633.6425 286349.0479 8041.1162 15370.0934 7973.872 11266.3746 11266.3746 7655.3593 27731.2507 7959.8061 26504.8421 19076.3539 11263.0703 12231.4129 7068.3842 19209.8638 9369.7301 32361.7818 9142.4061 15341.7586 4305.0658 11973.042 12939.2328 26662.4551 9665.4352 300717217 amyA Carbon Cycling Carbon degradation Starch Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 5792.0055 11163.9609 3531.2451 3434.2014 4312.97 3314.8574 132413.9738 3763.4388 4956.768 9890.5141 8152.7226 8152.7226 3013.6706 7805.1253 4108.1968 3688.0402 5915.0916 2874.8764 6969.4901 1998.2038 8520.8888 6078.1306 18322.7857 2002.654 4161.6515 4675.2153 239905290 nrfa Nitrogen Dissimilatory N reduction NA Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 45996.3451 275748.1228 11521.2967 17208.3296 22312.9568 12464.0697 29386.9902 10795.8199 107395.9951 41984.4456 121531.7357 240932.3041 25925.5285 37098.7935 28855.7544 58515.9747 58515.9747 49465.7587 132756.1291 14256.1547 32469.7991 37168.007 229252.6364 31098.7704 16530.2532 51198.1291 34415.7807 73370.8801 38640.0809 29219.3854 25916.0094 23402.0383 46320.3748 52176.9567 163271.456 338738382 urec Nitrogen Ammonification NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 6493.6371 2439.6907 111029.3906 6694.2235 4435.0302 20508.0673 9419.3796 4082.9163 8094.9167 2480.2532 5214.0791 8714.0915 2725.7288 13765.0347 6800.2226 8178.6853 4599.2005 3725.7206 5661.2366 25748.926 23330204 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingopyxis macrogoltabida superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis; 9632.93505 15835.2888 21375.50675 9523.31185 8360.75955 6438.7078 15905.0885 21212.0633 7584.6126 234474.60865 9825.8813 11503.03195 9153.8807 5803.0861 5803.0861 9161.17875 16660.18265 11212.40865 10982.5201 25544.42785 11543.94165 5880.9629 6740.9602 15564.9761 25770.06785 28899.7413 8802.0357 16352.9312 5863.85423333 10793.72025 15188.0352 8121.8824 59347.84445 150275006 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 17071.396 69688.8427 3951.5424 27876.6938 7042.818 19506.7897 46884.9509 11215.5286 17376.5356 10543.1228 45865.2352 112882.5089 27896.6297 57861.5208 106505.3605 39171.1063 39171.1063 8472.591 28358.3119 13814.2534 131196.4452 29193.0986 22751.7414 13282.1621 24222.2618 19750.4473 27064.5939 175945.5176 14024.628 25031.2444 16792.5147 22207.8212 18453.5171 33096.6727 9282.6049 157011600 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 14002.7062 3640.201 6738.366 4583.9317 3968.4643 50870.6646 5271.8097 3540.4788 2790.4043 2790.4043 6030.2813 4250.8358 7203.2045 4414.9264 5018.4098 5132.7141 3417.0804 7457.3774 5574.9704 2503.5049 6181.4938 6624.7904 2239.8979 23028.2797 403403214 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 10340.6396 2158.1238 2712.226 5884.6018 4102.0458 3345.3151 4758.6112 13616.4573 5271.1958 9438.1217 2710.529 3196.7708 5917.9033 5301.6568 5488.4632 88643307 dsrB Sulfur sulfite reduction NA uncultured prokaryote 22196.5531 4672.6752 5539.8934 3051.6691 10497.0108 21226.9807 16663.8944 11414.4696 400834.7702 6268.8536 9375.5728 5669.5017 3685.0252 3685.0252 5915.1434 18820.2037 7932.8247 8314.7599 41677.6283 4892.6035 17834.5021 11947.9757 23517.8525 10775.7836 18995.4859 772323.7835 14740.4369 11661.4129 46595.721 8933.4629 9657.5037 7203.0946 326950267 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 20860.8456 9847.8153 10934.1681 26071.4508 5940.0822 6972.4024 11685.6557 5933.7727 6044.2758 11226.6352 16889.2651 166514.2903 10223.3961 16281.8149 5392.1946 5935.5872 5935.5872 6737.8301 19907.6014 13821.6814 13894.0729 22890.9452 17846.6453 7930.8159 7315.3147 14960.1995 35148.7421 35322.4939 9893.4332 17345.5733 9976.2483 10099.6104 11232.1304 6419.6865 16647.9221 372275083 cysJ Sulfur Reduction NA Pantoea sp. SL1_M5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8445.2852 10893.4787 3398.97175 17223.0911 5491.2944 5827.2524 5066.0762 9098.2842 165606.9773 17267.9287 8643.5651 7331.9328 12417.2126 12417.2126 5193.273 19080.184 6953.483 6016.0525 4547.0888 3616.6347 27710.6467 20155.3752 6718.9595 17349.1019 16184.3959 10750.2565 11512.8762 16709.9676 7217.14 4369.148 15186893 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 29896.5759 53990.3261 12272.4957 5228.3127 24565.469 14329.8048 11829.1674 22418.4637 34270.334 26378.1864 34936.1145 35154.6375 504411.9315 142300.2002 30429.0462 38538.9128 28284.6668 28284.6668 13156.3262 64462.5829 21168.8322 57213.9606 38957.8401 18959.5933 34551.4774 51197.8906 57187.6958 48699.1582 137537.3809 32891.2552 86972.3045 40542.9054 38269.2654 42187.6039 129559.2005 39513.4042 153008518 pgk Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8481.6144 3047.184 3482.1765 4004.1717 6523.5129 2337.1031 16799.3744 1001563 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 12182.5938 8179.6418 55403.4592 36692.8163 8871.0604 10471.519 145140.0576 7563.5647 15970.6448 17511.0089 6895.2768 295453.1754 14048.8111 18923.0736 36397.0051 13122.9771 13122.9771 9199.114 13769.8462 27514.6816 15438.5477 14856.1944 17757.0789 5715.5612 8789.4005 17206.0609 5449.1813 23165.3727 27303.2151 17165.6745 21705.0532 16186.5564 9671.4948 6733.5811 24296.8153 312444782 amyA Carbon Cycling Carbon degradation Starch Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 4517.2341 414774.4877 6671.0313 7555.8318 4234.4064 4363.9061 14497.2087 4668.2138 5809.4724 3251.8042 8125.0477 4644.605 8861.1031 6211.9104 2318.2161 14745.5586 2461.1784 7975.2904 5453.1552 8258.5768 4032.8263 3124.0726 325533328 mer Metal Homeostasis Mercury Detoxification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 3878.4543 6270.5152 7821.3488 2154.7032 4156.0372 2389.8815 7092.603 5283.1057 326221.6315 21667.7496 4010.2689 4010.2689 2799.5495 7958.8097 3878.0871 12842.0309 6367.8921 5030.5489 65324.0186 5273.4769 23724.8417 1872.761 5180.8598 29459.6953 2798.3972 289620994 nitrate_reductase Nitrogen N Assimilation NA Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 5003.5708 4357.4497 28174.5603 3522.5174 93618.5896 5471.1549 2165.5721 2165.5721 39236.1616 4739.2347 5007.4675 4481.1912 5688.7461 6527.8788 2087.8586 6482.3941 3523.3676 88807730 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4272.322 7617.5181 9207.937 3449.0138 3875.1707 82860.5933 5438.2578 3683.1198 1925.7312 1925.7312 6918.8843 4713.145 4339.2825 5710.6185 15226.4525 2345.248 2612.5939 6039.0765 2233.6659 7499.4857 6089.3672 2711.552 3659.8616 3758.6843 2221.7538 9848.5552 340526310 ppx Phosphorus Polyphosphate degradation NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 27657.8139 8677.4886 68128.7629 7937.9661 20849.0034 12777.0728 37808.9329 11391.4251 13007.442 36519.3836 41791.0273 281218.2148 20219.6059 31086.6412 57802.8579 17143.9068 17143.9068 19952.9343 60924.0703 47380.2187 39721.6833 95259.8762 31039.0994 26960.71 18288.4882 20086.8992 26778.7784 51224.4396 44695.1303 58062.6277 23604.8539 27410.4903 44050.4675 18087.5515 28236.0569 386847319 cmci Organic Remediation Aromatics Other aromatics Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 63254.0509 18397.8444 56993.1801 261888.7287 149097.778 28706.478 41087.0304 92207.0537 67620.0567 40719.1195 81579.3284 79956.8396 1665436.6895 110757.6086 179890.2649 70920.1109 126187.4138 126187.4138 51968.3724 107745.9106 44924.9878 66513.7204 177673.1443 108837.3814 53462.8219 61395.2016 65825.4991 90182.0375 284207.9959 68599.4699 116249.2105 128647.4528 74030.5977 62057.0992 53506.8845 219888.1395 157322729 endochitinase Carbon Cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9225.2145 119657.12 12554.1071 17846.21755 4567.35075 3713.7608 2908.0554 8336.6038 9791.3158 160738.96205 10359.9162 8078.5564 3469.40855 3469.40855 5004.3549 15096.62835 9348.5734 8207.6667 11911.704 8566.4411 4867.95525 4911.0363 9138.76405 16279.4209 9250.3026 11492.8602 4029.7583 6546.40235 7543.0619 5295.4165 10205.4885 371721264 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 8899.6089 4368.885 11797.6728 4290.5294 4420.0585 3813.9535 9656.0208 3715.9177 68615.7519 9497.1279 4360.6423 8231.068 8231.068 6027.9888 10533.4822 7179.0641 12093.0234 16034.4069 10183.2581 4568.291 6494.3757 8865.4138 5166.3744 13558.2274 5074.1145 21871.4641 7277.8691 3993.4075 15167.5927 2625.0369 9092.4515 54023045 amyA Carbon Cycling Carbon degradation Starch Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 373676.3491 80065.9628 208018.3763 260586.348 122724.1446 152601.746 190756.0135 727642.3884 302139.4026 190198.537 415607.5198 207028.0645 4624302.345 384516.4758 482985.0958 417872.7719 285817.0615 285817.0615 173458.6488 145818.9767 231378.1131 338961.5689 396583.4052 204064.7228 112127.2566 138347.5826 304409.7229 155621.4957 244925.75 321244.9946 350805.6572 162885.7873 112502.1532 265145.9266 188840.3067 216847.2019 269832035 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 6853.1468 5141.4878 5035.8365 5518.1275 5932.45 5017.0842 2823.3134 5259.3408 8662.7645 4423.9974 150617.974 6181.7374 8511.0975 7021.5122 2864.6612 2864.6612 4899.609 11270.4599 8954.8472 10028.557 9453.4076 4949.2661 3476.1562 4322.4433 11288.7145 4009.8933 20272.6519 11912.732 11943.9046 4344.8856 6073.3826 6987.3926 4151.2563 10869.7685 13992710 dsra Sulfur sulfite reduction NA Bilophila wadsworthia superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 23332.5283 20889.9678 6212.8826 10872.7924 8921.1946 5313.1019 14765.3435 10565.7623 41912.3723 10081.0236 429896.0665 12499.2667 13277.6899 10857.4838 9397.2517 9397.2517 10024.8907 27705.5905 16102.6049 13871.9965 30610.2849 15372.2857 6790.3875 7737.3492 15537.8599 8002.3419 28643.6335 12719.113 19071.3741 8249.0377 12561.1994 20274.5224 7827.6623 17820.6031 221215292 urec Nitrogen Ammonification NA Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 52640.4566 46306.2051 29731.4348 28304.395 21421.3753 102774.891 57968.3176 39658.286 39077.0663 149834.9637 55705.978 431293.0599 24933.5347 37198.9672 61193.3292 73809.2727 73809.2727 22980.0409 82754.902 28570.9918 46547.3942 70995.0101 50385.2112 18905.5076 33216.7759 36278.1956 37771.4754 196293.465 26068.0682 125259.2451 52007.0977 48011.8227 80784.8346 139548.7093 65730.0171 296138350 pcag Organic Remediation Aromatics Other aromatics Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 27916.2064 21225.3336 9039.0396 38019.3885 7154.0462 79040.4392 37198.7421 11164.9062 24347.9736 60475.82 31374.2958 695257.5266 74819.115 89543.5187 56664.765 33526.879 33526.879 51108.3061 62498.6243 31906.9382 24518.287 46250.6844 31785.1449 30265.9219 28451.1602 34401.5364 15144.7403 63921.9184 40252.5271 67621.4559 12483.2615 57281.5816 23845.0186 13770.6495 31878.1117 284448043 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 21574.4541 35485.8926 13254.8882 8121.3638 34368.6689 6555.1843 5288.4487 10903.454 14200.9107 20358.8103 5464.6561 178759.2374 14211.8753 231614.0925 18157.5347 8614.5177 8614.5177 14162.5415 33075.5179 12980.3871 22325.9343 98774.413 19325.1908 7652.0816 10049.1535 22803.4696 7210.154 43327.1924 18350.8139 36488.908 7670.5532 10363.3571 14341.3134 17786.7419 16645.2121 334891315 ppx Phosphorus Polyphosphate degradation NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 103376.6347 31659.2956 312051.929 49670.7299 67959.8986 17369.6453 51001.0832 60661.0069 49306.9654 55598.4302 70038.1413 62956.2433 1077861.572 59544.3322 91464.5306 75642.6182 59935.0479 59935.0479 156921.7729 100879.3456 56267.0063 53296.5685 85773.597 48194.9783 49433.2448 98038.119 75831.7816 58826.1333 122970.7794 39116.9882 86984.6393 33359.9681 66300.0267 65303.8352 38416.4947 83208.1817 112462315 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4982.7409 13508.2451 44326.2452 3319.3964 48973.833 6093.6144 4992.6082 4482.1567 4206.8062 4206.8062 8243.5543 3498.9233 8247.0242 7333.1434 10999.8652 54282.9654 23743.5995 3235.5612 3064.1624 2910.8164 14296.5623 10244.0091 160917567 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5211.4662 5362.3117 5972.3545 2589.844 3983.3483 7223.5773 2553.7637 156214.9506 5654.3286 5923.222 8944.3211 7748.2783 7976.2525 17052.95 6264.9062 12151.115 3642.0649 7645.4695 3209.4791 16015.7885 10653.8088 9722.9671 4269.3832 4473.98 6275.2597 3541.4104 8072.8212 320105024 mer Metal Homeostasis Mercury Detoxification Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 44516.9981 17252.632 22677.5664 27380.7516 8591.8486 8513.0747 73989.4533 16081.9423 11585.1515 66702.5165 44424.0012 428173.215 16007.3604 35520.9725 51941.5829 29226.357 29226.357 10872.3715 44475.7287 22330.3828 34982.5786 83139.1869 46607.5588 14086.3967 31679.5016 32125.8136 24101.338 53255.3554 67278.0694 36876.7281 14503.28 35671.348 29567.3159 14188.145 43371.749 384371766 urec Nitrogen Ammonification NA uncultured bacterium superkingdom:Bacteria; 19958.2598 9150.0566 10181.0564 10216.1389 13193.1618 6188.9246 11985.7135 17160.5874 37205.2958 376103.5404 11728.2175 18388.6147 15345.923 18718.8028 18718.8028 10025.9543 28062.7135 15458.2468 20590.3454 23388.711 25950.7665 11467.9002 9479.8291 19984.7931 14780.8012 32812.2353 70574.2375 25112.2084 7319.8393 19870.1464 16290.2478 12085.2785 19503.1534 165880055 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 16747.8079 21124.5971 6945.079 8482.9044 9422.402 5474.1817 7511.7164 7021.0974 6111.349 4765.432 114986.9116 7949.189 8631.3452 6633.9637 4720.5512 4720.5512 5940.8876 14188.1648 8632.9813 9691.0067 15949.6967 9543.5851 5163.6415 10503.6165 13855.9703 14343.1914 63486.2161 15566.6072 14044.6777 8339.2379 8700.3896 9777.3923 8169.3243 23805.6667 196482278 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 24136.481 1390855.5987 341443.5281 20912.2914 12168.7769 6365.1912 12762.7036 12710.8048 5651.595 19299.6129 33279.5999 11114.2907 593855.6098 20120.8799 21855.7746 16258.4255 17447.1694 17447.1694 12428.3608 31772.5517 16852.6029 18084.4797 120446.3906 20465.2937 10701.1064 12335.5264 24660.232 7032.6418 34169.9988 18579.6919 22104.5769 10806.837 13152.4374 19133.5852 19091.1872 30562.3026 46917326 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 35745.5176 11743.4881 7323.9463 12505.6303 5554.2582 16473.6699 9918.912 24798.5722 8633.5286 41184.9128 33142.1586 203234.5149 21240.565 20363.0381 26094.6454 11737.7458 11737.7458 22293.4094 34031.349 22687.2686 10770.9907 41685.6851 27413.35 9995.2658 13711.986 39527.7182 15032.7087 56332.5247 52377.5682 54958.9785 7601.1359 15894.0247 24046.9187 8663.0029 40843.7806 373941909 arxa Metal Homeostasis Arsenic Detoxification Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 13206.5496 71572.9915 6332.526 11364.7594 4187.955 6829.4836 5665.1287 8991.7467 28934.3953 14264.1417 154746.2053 19588.8971 10288.0019 10542.3373 4251.9114 4251.9114 8193.0658 13384.2817 13862.1344 9629.2126 12315.7892 12942.1809 7567.4422 12185.9862 7443.8557 4822.9484 22822.6813 7677.6205 15648.6486 3828.6208 6425.0546 9387.769 4724.4116 10267.0161 307746113 nirb Nitrogen Assimilatory N reduction NA Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 77829.4776 5634.4824 28878.4333 12178.3482 13322.9835 8249.0526 9579.1209 15160.7365 45800.5089 70700.4988 214080.0976 28567.9288 12028.9031 8465.1128 34341.3985 34341.3985 11020.4261 24940.4512 13383.2985 50290.9477 13210.8189 15862.8718 9346.1911 9578.0597 37347.7754 12211.3753 23696.1966 155449.7409 47633.4115 6195.3352 10282.9013 16586.0142 8461.3408 12174.016 359822558 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3926.5853 5985.4832 3056.6644 4100.8172 3631.3632 3678.9412 3719.6948 153885.2138 4868.1001 6996.5904 9892.643 1828.5375 1828.5375 2738.2605 15441.8223 5344.9376 7907.6329 7626.1158 158476.5068 3790.1856 2637.3011 7122.1287 6896.0942 11938.9919 5848.2241 5170.8648 4459.6266 4619.31 15549.0028 7182.5088 213013104 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4318.9893 5360.8136 2326.1634 26381.5254 4970.7552 3966.3559 3154.7381 219861219 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 11456.6291 11353.6694 5084.8876 88661.5677 3701.6416 14984.0571 6782.6933 9075.7557 84118.2528 16914.3195 12210.3128 10222.5925 5244.447 5244.447 2849.612 9625.4064 7114.6652 9649.2644 4881.6433 8094.2961 6611.8522 11009.6115 13740.4634 31958.7163 12673.4478 20680.7132 9478.9527 9249.3424 10062.3151 3894.266 5403.9727 325000982 ppx Phosphorus Polyphosphate degradation NA Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 6234.9075 6203.2411 11186.4769 34521.4564 5906.6828 4176.1439 3624.8828 8099.4892 4141.808 108375.7553 13091.7234 5795.2587 16095.0807 6540.9762 6540.9762 3683.0936 14584.454 7345.229 6778.9707 54166.0059 5314.2796 4825.6859 6935.8464 7861.8144 15924.846 6532.3197 7718.3859 2638.1996 3436.2807 6388.6993 2411.1466 6816.817 271966756 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 23862.4183 78140.8759 7403.4747 29093.4617 9642.859 38320.9105 15810.493 56251.4698 14669.426 22324.024 17134.1715 636219.8671 323569.1728 24444.64 68789.6883 39090.0106 39090.0106 13319.59 36648.3844 11427.3182 24706.3305 50285.4987 33090.6434 20148.0877 23573.275 23898.1798 19852.6595 91176.7185 32874.1362 23108.5486 8737.6494 17013.7059 28063.8035 18571.8672 23075.5326 327377999 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 10820.7294 5844.8968 6624.4799 8299.4154 6490.6547 5186.5025 7918.244 4827.2262 5100.5263 9474.3533 10783.3417 152942.0755 13600.7402 8749.9858 4734.427 3351.9613 3351.9613 11002.0748 8684.6246 7376.9337 4837.0174 19489.7718 9689.1413 4940.774 3820.9661 13228.2723 16219.7254 14717.9097 8059.5512 11060.2115 5726.9162 9821.5917 6604.5555 104106.3778 7165.8909 269832345 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 9627.7522 422314405 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22525.4982 5310.5274 9523.3527 7870.3182 44438.2017 10481.4149 3761.7853 7132.8255 10121.5413 12434.2234 195756.2782 13292.9913 56682.259 24947.543 9117.8412 9117.8412 7051.2684 22102.7462 22654.9902 7837.0594 13751.4325 7230.7815 5350.4321 7172.711 16196.2489 7091.9439 26630.5359 12532.7337 15620.1139 13410.8363 10090.9217 20491.2204 6162.2784 8770.3996 407252212 cmci Organic Remediation Aromatics Other aromatics Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 11117.745 8325.8066 11187.0305 3526.6653 3401.8678 4269.5912 5677.5344 3695.3667 122628.8162 7298.6901 6222.552 5225.4872 4332.8914 4332.8914 4316.8602 10203.7778 5789.8885 7053.8862 15816.0834 4071.2708 5022.7812 6170.1436 3307.5525 17425.2728 4497.6483 9143.0519 2843.3211 4750.56 6597.9233 15880.0405 9553.545 164455396 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 14527.285 14433.7778 5450.0864 13931.737 12920.8217 10132.8111 14563.4141 11981.8658 8496.1029 441288.2189 12394.9837 12028.809 13586.5043 17815.3167 17815.3167 7810.5909 22780.6796 25465.9412 15338.3577 105217.7324 11108.7717 8287.6319 11412.3365 10156.8723 9740.8914 26448.5564 36759.0338 24102.4426 10514.5987 10608.1085 11802.8379 17762.5932 23176.1439 359733668 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 8467.5274 4350.9504 2791.0416 2882.1221 3887.3141 3969.8377 6190.0354 4102.9635 2135.894 2135.894 6316.4722 3412.2973 4819.1312 4294.2613 20241.7546 4085.7986 4803.1805 1576.7325 5338.5013 3004.8172 82568648 badh Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9275.152 12445.0419 6088.1812 3123.70145 5697.6105 5074.88595 9014.67695 4532.0292 90408.33695 6553.5446 5435.82765 4491.5074 2524.87835 2524.87835 4775.70045 14074.05695 7058.81085 10172.46755 8321.74805 8189.98175 3356.4149 3843.75785 7984.7534 2649.2018 7629.733 9416.0916 4108.1144 5142.332 6425.00315 4511.6349 7481.3547 226941000 napa Nitrogen Dissimilatory N reduction NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 23461.2517 37668.4074 146854.7712 30526.0029 16790.0289 18035.5165 21046.8856 8542.3546 17897.1307 22260.7104 14320.1419 319296.6728 16894.8325 21023.176 28572.5392 13818.1341 13818.1341 17036.4769 38168.5335 32654.9245 16677.7619 54027.7405 145860.4306 11915.4166 14226.561 17471.7897 22188.605 143964.088 12853.6986 130007.3313 12809.6268 10775.7125 74964.3646 12778.3753 36831.1974 300106298 Sir Sulfur sulfite reduction NA Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 93548.6759 16227.2147 28615.5396 23604.7028 85377.8214 12470.3804 21192.367 49639.0648 72494.8882 136580.8152 76477.7257 60899.1626 774456.9099 54092.2529 91995.2744 55015.2379 39902.7273 39902.7273 280075.8261 93020.5627 30740.0856 36044.7869 80141.0671 72923.8744 21295.5777 33088.2967 95362.4843 104544.6224 547254.0299 88202.1863 68515.5085 23888.2189 59601.6075 134061.6809 102027.9546 77722.8542 164425530 rgl Carbon Cycling Carbon degradation Pectin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 370328.1166 1451960.1231 50441.0804 5482.42645 70338.0253 32733.99455 183839.78005 19134.5206 26113.5104 16262.4588 16262.4588 38729.944 12813.8632 52590.335 61795.7062 79895.7515 11240.6482 75268.5612 42908.2412 134848.0314 329948071 ppx Phosphorus Polyphosphate degradation NA Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 32131.9161 33181.4955 87484.1692 2371691.1674 19442.107 63012.6793 47861.6973 70112.2628 17113.8796 75031.7543 18374.659 697817.2977 33364.5271 27971.1964 30280.3432 56380.059 56380.059 16554.1789 48629.4024 35107.0752 56874.749 36737.1043 72745.8433 13912.7167 112470.7506 39082.7591 17010.4401 113682.9064 73509.9171 194471.1472 16533.2874 23983.877 30258.3071 14460.5952 26042.8121 339787549 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16516.1196 8963.7747 3993.2546 15038.5838 19500.2112 8969.8129 3901.7307 5928.1219 99781.7478 7853.9635 9582.1294 16832.9214 16832.9214 5567.2083 10962.974 5417.606 4842.9784 15152.7668 5869.6194 3282.3054 16842.6667 8067.1935 20842.6996 39406.2324 7881.5089 11976.7276 3714.8623 6449.5071 59379.1674 6364.6665 5211.701 343784395 amyA Carbon Cycling Carbon degradation Starch Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 205582.9738 5831.0991 10638.7208 8517.3333 9158.19 22435.8482 28733.7827 14857.1065 47255.6426 59793.7153 210534.1213 29125.9961 80529.4912 12716.2231 17401.3172 17401.3172 14906.5506 20254.0099 5673.5717 13498.9468 109700.4363 10576.6507 86597.6551 36655.166 22672.989 15922.9303 14779.1502 22993.1839 16621.6655 13390.2643 8824.1849 15108.7093 11671.7427 10433.727 290570988 chitinase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 18528.2846 9539.5283 3367.1931 10438.0651 3630.4774 134565.4391 12721.1357 11479.8014 4723.6585 3897.9408 3897.9408 4524.5627 12261.8648 4964.3875 4190.6094 6671.0338 6654.77 3035.4318 7585.394 6500.8372 3908.0713 10110.482 5880.8258 7375.3243 2026.4028 5573.297 5858.6032 2891.5263 11210.5595 33591786 one_ring_23diox Organic Remediation Aromatics Other aromatics Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 5655.1337 9540.3844 5790.8341 3228.9671 7537.5058 3995.706 7129.2989 112881.7247 10273.1332 4675.8263 17139.1824 4088.321 4088.321 11724.6143 7606.0584 64227.5189 9836.3494 2646.1567 9212.4089 11064.3815 7005.0437 16560.1217 7109.2572 9497.2748 2979.0444 18829.1394 8690.2219 4278.4651 5320.3669 73534161 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4096.2375 14839.6983 3726.1934 29845.5523 3213.5231 6598.6607 2421.2234 84588.6287 5022.3588 2225.6155 2225.6155 2869.077 8621.6161 6132.6889 90881.3224 6247.3958 14251.3655 10691.8638 4309.6844 5037.3235 22713.2425 4797.7837 3555.2913 5035.4964 383332280 urec Nitrogen Ammonification NA Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 14327.4169 12715.2012 7451.922 5289.4241 5402.553 3293.7502 70234.4373 5163.9008 5676.7297 3766.2137 3766.2137 3309.4817 7680.1343 8063.7549 6481.0495 7063.8437 4312.0529 8145.5044 5444.7918 13624.7476 9123.727 7773.6346 2908.3855 5096.2809 4588.1168 5673.0853 9026.0119 344318444 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4022.3807 7070.4666 3336.6173 2739.7194 52333.5295 9410.8188 6131.6702 4182.4142 4182.4142 3724.1712 3102.4743 6221.838 5644.8406 9697.546 2205.4357 3212.5343 2819.6756 6224.2333 386289531 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8500.7706 7601.9856 8119.9245 21406.0342 7144.2844 6284.5586 4731.7113 2251.1083 7409.0119 7050.3366 7888.8928 128147.4672 8504.9075 10144.9717 18811.9119 7761.6596 7761.6596 5884.8324 24248.9392 14669.1134 26567.7543 49303.7532 105544.9566 33933.1683 5420.8429 14724.8452 22836.9104 44984.7068 10389.6019 11590.5064 5479.5834 6970.5534 19011.6654 3720.6939 95185.2044 332517279 xylanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 10344.4708 13495.9386 28679.4856 5397.845 7326.6655 8478.7836 7928.473 8458.5846 46995.5434 33330.1548 128477.9127 15660.4992 22036.5787 83759.0558 8158.8082 8158.8082 30144.2958 23690.8728 15978.7369 36502.8825 19741.7892 11328.0511 9050.7068 10009.231 16757.4187 7220.8286 31868.2901 19964.6296 34869.3787 8276.9731 17389.1744 9060.9468 35307.2556 12374.3387 373850726 rgl Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 91999.6992 59054.5878 77077.6804 63449.8343 78142.8143 38677.6393 60734.1903 62177.0799 32395.4602 63861.6768 84868.7428 37471.1186 1916199.3419 88858.5476 80534.3676 139426.5992 59767.9937 59767.9937 38199.1763 75425.5962 58901.7601 1217897.2243 74731.2261 135651.0268 35785.3035 75691.2916 75461.9987 32449.6977 107153.4303 30693.0094 75463.5047 32387.9819 44470.1502 41421.0156 33560.5859 91911.2337 348499933 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 432846.7471 11100.0327 15606.5504 57880.4336 7821.6715 503447.5241 3869.3319 3922.2333 5706.3301 3097.7508 15263.8077 6106.3015 6566.6012 164455812 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 253685.4853 20332.9774 197808.1216 194525.8305 376115.8254 69597.7683 81260.6247 193514.8653 88757.0759 159155.3624 297006.6431 185125.0577 6002879.1186 389207.7603 186632.0082 361884.453 367356.1926 367356.1926 122038.9519 242195.8429 186815.6498 398051.1269 553598.2129 204046.2559 191617.0852 132019.5816 217998.3183 187077.3568 384385.6537 354391.6277 201544.317 120510.0803 214786.7716 150078.7355 163253.9815 509481.3597 196480020 amyA Carbon Cycling Carbon degradation Starch Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 231191.655 59937.2377 17178.5882 131623.5705 22515.8487 509460.4127 110169.6093 23187.5269 22517.5987 68800.9336 67838.334 13735955.3632 31616.847 33712.8729 59802.0202 52567.2989 52567.2989 45068.2214 79782.819 38971.2177 320674.8879 252863.2833 577306.0144 77518.5517 42485.5433 51047.2333 93177.805 147218.1925 56316.5647 109630.4435 70427.7642 88467.6153 86357.3801 84168.5028 61083.0881 118703956 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 53482.0096 2397.4268 2429.3066 4986.8799 2578.0966 5664.4731 2901.2201 2066.8374 2066.8374 3027.1639 6781.0264 5151.0374 5216.2176 7372.2239 3068.3666 8175.2562 11120.8491 5914.77 9487.9554 3166.8369 4932.2581 5795.1619 3946.3713 6354.1726 74317490 mer Metal Homeostasis Mercury Detoxification Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 5515.6616 36855.9815 3630.115 2071.0368 3275.644 4233.8339 9014.9986 4748.0678 29003.7122 11299.9237 7231.6534 6378.5144 6378.5144 9341.4128 14766.8872 7513.9912 6013.3531 5709.4977 13121.1484 2664.7205 29957.261 6353.5197 27518.9175 49040.4508 12147.6064 7079.9861 194337793 ppx Phosphorus Polyphosphate degradation NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 12622.2712 10808.6086 5140.0822 13235.0608 8741.6076 4810.8191 5946.2707 6543.3202 6495.0685 147352.9613 5988.6642 18829.9832 33724.8307 7945.5842 7945.5842 6763.5211 26015.9875 11390.8316 14133.142 45827.2386 10959.3223 6903.4806 12087.7264 29185.3392 21270.5465 37245.5991 13221.332 18226.4999 10248.0338 16540.6674 8753.5673 6805.4586 13994.634 22299223 ppx Phosphorus Polyphosphate degradation NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 9865.5985 2480113.5791 612715.7312 2950.4552 3260.1467 4721.2372 5165.0635 6579.4566 143260.8537 7536.3334 7733.6228 3483.5278 3483.5278 5725.9812 18262.5017 7793.9984 18872.6256 12003.1316 8420.019 7339.4806 5905.7871 7608.7183 8894.8873 17582.9853 9134.4885 14579.6982 3891.3161 10040.8068 7118.5948 5111.1415 112432.8696 308187936 cysI Sulfur Other NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 19155.0323 102303.0836 6069.0306 17500.5416 14129.6229 10028.1368 7661.821 6058.1309 5325.2082 7194.5481 103208.6901 12473.1684 12255.7265 21803.5018 7852.7791 7852.7791 5392.4087 21451.0768 7326.6916 4798.458 14138.7382 7024.1726 3632.226 9928.1117 24490.7193 7995.0478 21505.356 13223.2784 13627.3444 7468.9328 9424.5411 51965.5102 5318.8604 55978116 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13448.5808 11523.577 9124.5749 21058.8143 9046.6726 9645.3284 9542.4048 7722.8065 20415.9593 5026.9209 313194.5738 11849.2592 10394.962 5195.2967 4450.7864 4450.7864 8769.3638 17221.0636 12271.7726 15889.5358 15669.1143 21267.6987 8053.4977 6622.8787 11318.1407 6790.2111 23175.2361 11443.4982 27507.5781 7491.2752 12888.4455 10877.1557 10269.1637 21655.7647 260631137 atza Organic Remediation Herbicides related compound NA Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 31282.9376 12504.5614 21498.7535 26574.6645 31434.5666 22625.8069 20499.9032 10740.7932 24433.3724 27840.0868 13524.885 429383.9321 41904.1319 24534.5151 26900.3388 28639.9449 28639.9449 16480.7162 34102.2304 22066.4556 36675.7084 39103.0019 34706.7694 14127.73 15433.3688 27708.0336 40457.5714 67632.3659 16156.0498 31197.0312 12772.2339 19879.9126 51261.9354 17968.9456 39523.1231 149125660 terc Metal Homeostasis Tellurium Detoxification Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 26381.8506 9289.4085 13264.0362 20018.3365 7165.7551 17508.9582 8246.1317 7424.0779 10239.5901 5776.572 172124.4614 7225.1715 12188.8565 20597.9895 8571.1644 8571.1644 6842.5449 12226.0266 11548.6334 148629.0261 20704.8751 7172.5753 7795.3488 9440.8092 11855.7632 8259.2763 16572.8419 16136.0919 16775.5113 8156.307 11250.2534 9267.0063 5117.0667 26819.7795 328885384 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 16901.7176 10877.8978 3331.255 3992.4882 5445.3486 16912.9011 9367.7572 6058.5426 5646.5686 6441.9103 6548.5144 6548.5144 4885.4741 17088.1141 4929.2358 5721.9488 7822.1096 7169.6452 6458.7906 6161.0588 13588.2328 7624.932 8209.9729 9805.243 19589.7343 14482.3011 4272.1112 16737.3518 51869942 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6955.2561 5517.4054 8357.4324 9077.5106 6230.3562 61622.28655 6370.0169 3601.173 9097.75135 2626.16435 2626.16435 2704.7726 8450.7008 6167.7786 7425.1965 13173.5879 22892.511 3086.132 5593.815 3566.4584 14431.203 9209.347 9127.75885 3228.8769 5516.5084 4326.8708 11015.1972 164455506 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 156443.0877 37651.9668 67176.2021 88125.532 107236.5232 15332.2167 126584.261 76034.1622 77927.2971 65131.1856 151742.3763 77816.2585 1544019.8254 171120.0622 115556.1371 248303.1624 287819.3944 287819.3944 50493.5312 148956.5972 60645.8659 107434.2453 99798.6517 90660.3599 51351.9083 65687.9292 83667.2117 106614.6163 701934.6834 243418.7651 115294.1651 450485.8399 104328.2001 70764.197 56265.1979 134270.4155 254043682 xylanase Carbon Cycling Carbon degradation Hemicellulose Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 7328.7116 17694.7467 7125.3018 2894.4679 21767.6876 9806.2843 4556.6641 8185.9928 7981.1114 4190.8372 12404.3365 15203.7797 12892.5875 12892.5875 8353.0327 17317.0896 7503.8452 13977.2938 35430.3085 6089.9229 4530.9174 4677.6574 10553.231 12352.2247 24096.3483 48319.9249 14228.498 6594.8109 13372.4224 11314.4848 5741.9852 10206.3111 39647613 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 24094.9613 26938.5021 4227.7715 6452.1549 8560.3308 10498.2793 13060.1941 9861.1707 43135.2958 17654.7877 126817.6271 12171.8401 28155.8615 18831.8953 12887.3396 12887.3396 12417.2753 33647.9996 12067.6926 187123.0411 37816.7887 10751.5237 20294.5775 26131.8873 18321.5784 19511.1224 101982.232 14080.8527 19522.1539 40821.2617 27582.9202 24879.6923 6602.6772 26809.1185 25900750 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6304.7573 13514.6155 6876.8141 5479.4623 3353.1038 6920.791 5866.3744 130488.5903 9452.1957 4462.271 4803.5247 4803.5247 8772.3961 10063.4717 7705.0479 6533.8922 3159.6963 2500.4423 6528.9117 5040.0601 14297.0655 6586.6816 6255.4621 3320.4365 6457.4692 5002.6562 3567.1667 5916.5404 15077478 dsrB Sulfur sulfite reduction NA Desulfofaba gelida superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofaba; 138633.653 49691.4648 59283.7937 100435.0813 65976.57 56178.0649 131413.671 118651.6598 94458.9815 50441.8862 74447.1827 56460.35 1888705.0103 60924.7759 74800.4586 85196.2469 54655.003 54655.003 36474.1147 66173.5925 49208.119 58263.2222 322523.5742 151281.9425 50728.7625 38771.5085 67819.1058 75365.7468 350726.4412 73771.3813 95279.3686 64719.7809 48807.945 75653.4872 77556.8039 102833.934 119117077 alpha_tubulin_Oxymonads Other Phylogenetic NA Saccinobaculus environmental sample superkingdom:Eukaryota;order:Oxymonadida;family:Saccinobaculidae;genus:Saccinobaculus; 17947.5955 14992.0396 11040.7289 11827.3276 12320.0226 8718.0895 17479.3636 13459.0238 16870.2275 14973.3798 10594.8116 492871.5399 32669.7872 17411.0992 27296.3018 69782.6186 69782.6186 15530.9571 50163.0132 34718.89 20115.6769 27441.1972 21146.7394 11405.5121 10530.9155 20489.2675 9306.7911 37110.3217 26481.4515 25654.7472 12531.3318 13013.6456 15304.9309 23657.077 28321.2516 114800512 terc Metal Homeostasis Tellurium Detoxification Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 13406.2044 9399.3003 8726.4068 4195.3639 22356.3417 5108.0939 5643.106 7361.9203 12034.6877 5089.8681 229606.436 13109.7557 14377.2696 12060.2351 7243.1498 7243.1498 16149.5896 13790.8304 7204.7494 9617.1273 10861.0215 14516.6004 4894.9826 8479.8764 11698.8234 15845.9123 18187.9559 9453.2001 11531.059 14024.6104 7811.9177 8114.489 4302.6066 15834.1549 310826927 amyA Carbon Cycling Carbon degradation Starch Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 19652.8712 11184.4293 4848.6189 48136.2575 2804.5576 6517.5036 3439.6733 5319.953 5894.8673 3437.8158 88315.0679 4858.7344 9326.6099 5845.0097 2162.1909 2162.1909 3015.6604 10625.9658 8419.303 10106.5562 16354.9739 12901.274 3236.8561 3455.0266 9613.5735 4123.4007 21066.7965 6466.0727 7635.0673 1874.2529 7473.036 4950.694 4221.9127 9996.9741 422314395 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6696.682 2109.8538 3451.8604 4074.3241 6032.8954 65001.001 9155.0965 5367.8777 11003.0296 2231.5239 2231.5239 5372.5145 7891.7053 5492.9489 7416.9686 8540.3314 7050.2419 3275.5248 3019.0729 6902.4161 4007.9488 13427.0243 5777.3663 7413.9677 3294.4309 4709.467 4501.819 2910.1775 8234.0241 220907746 terc Metal Homeostasis Tellurium Detoxification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9612.5155 25136.2508 6547.3603 4292.3529 6482.4394 6640.0617 3025.8474 69673.8119 4706.921 6104.1917 3815.5543 3815.5543 9903.1426 16181.5997 7867.1407 8724.1806 12271.7459 4979.7813 6571.4395 3978.4605 10555.2394 5920.9066 19587.345 13316.8855 10960.3981 4319.5052 7423.1082 13860.2971 20262.211 12823.2119 164455344 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5066.6546 18684.2424 11803.7031 2490.4428 3576.0241 3588.3558 6136.8363 2930.9669 70343.432 6144.0004 9250.3365 7865.0527 5178.9388 8085.6666 5857.3845 7605.0828 3001.682 13267.0072 4983.2724 7216.1957 3604.8079 4305.5523 4460.8324 3756.5175 5855.5034 283436822 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9457.2356 11715.7331 3070.7071 5473.8687 88823.9925 3616.3511 26310.3057 5377.6602 2812.237 2812.237 3891.3001 8117.5228 7412.6725 7457.9081 7164.8372 6246.0457 3105.7099 2691.3328 19069.1431 3515.4288 12301.4604 12416.4593 5863.6142 3810.2537 3191.0962 7433.6961 3853.4888 7369.5945 223586133 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 683207.6475 78993.926 272158.0236 347675.9513 2000275.3102 47116.872 250217.8785 788174.7429 253964.9538 310874.0616 295819.3105 313914.5084 9736606.8455 593436.4587 299820.8911 578357.1334 382580.5118 382580.5118 386955.267 468625.0328 631629.2089 401195.3253 907114.3561 1602857.5239 277073.2104 363329.4901 1069925.2344 313308.3736 1108127.6535 400908.6673 330326.1682 214986.8468 293677.6169 289347.3715 225009.1269 586042.5388 398066554 pcpe Organic Remediation Herbicides related compound NA Rhizobium sp. CF122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 28225.81 97761.4292 23153.4723 23412.3135 27675.1064 10377.8852 26938.8573 15722.449 20650.5864 30023.4461 26718.9879 388997.9072 19781.5361 101701.1895 45696.8357 39329.2546 39329.2546 14868.9889 34315.8356 22731.7238 175949.2977 36619.3614 24377.8497 26745.0076 45530.6008 36599.9823 19663.7604 51455.2937 40318.8152 38675.0434 20200.2709 104213.3314 29361.198 20329.4078 53732.8952 378951740 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3995.4816 5230.9656 4880.013 2804.273 3450.694 7929.9619 4776.4104 250983.6458 3544.0633 8211.0364 78184802 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5613.6694 5661.4868 17505.0234 9703.4117 7450.9286 12154.7706 2483.8171 5140.7558 3971.7512 3971.7512 4080.3543 6264.971 4590.9501 6490.2931 5876.253 3119.8112 8847.5498 2530.0017 13842.2929 7012.4742 32478.3112 2373.2853 3399.8659 21178.6876 5430.2209 349583569 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9519.4308 6525.6773 29349.813 7141.4723 3374.8435 9727.3239 10117.016 7096.7507 174480.8616 6120.8392 11223.6129 56419.6501 5755.0052 5755.0052 4329.1152 17000.8894 7854.5094 7747.1749 10781.8881 14301.9666 4550.3791 18372.7178 8415.0408 5439.9575 25690.6868 15726.3968 13027.474 3010.7359 8891.5692 14101.5893 9585.5514 7187.6918 166086218 tktA Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 5650.481 9755.0189 3741.868 3290.2393 2677.2475 4198.9153 4061.0983 2836.5407 74162.9899 4967.4569 3107.0096 3036.9524 3036.9524 3214.9666 7548.7193 5911.4615 87248.492 6381.7478 6010.0308 3929.5395 8210.0067 3632.0195 10706.0904 15530.8495 9531.4861 4175.8039 4853.0701 2693.3897 5640.3313 317170879 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 43250.1689 12673.0281 13384.8296 50678.0944 20157.0497 15817.6731 16530.4071 18247.7783 44715.6969 122307.4672 40823.9995 37139.2836 344186.2444 33630.3158 30672.4903 51242.651 25109.5776 25109.5776 97253.5015 30239.0421 18359.9929 62722.423 27011.5158 46168.3362 10579.1985 25181.3852 29735.1585 156998.1542 78779.5106 31021.0593 29069.0456 15074.8817 51130.1042 13519.2934 52551.5797 38313.6676 37924921 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5515.8041 8395.6819 4119.4253 5278.6882 5175.5653 2463.3348 86714.6413 15452.815 3276.4912 3276.4912 4745.2851 9234.366 5672.8952 4462.9562 7592.6466 7452.1459 4513.929 13623.2891 6461.0465 2766.3435 14365.052 6092.0184 8679.9039 2371.5572 4473.3439 6329.2194 5136.3388 288787827 nirb Nitrogen Assimilatory N reduction NA Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 12725.3517 53442.9078 34589.1307 8198.6345 27054.8908 11123.7548 6091.5381 5542.0115 377529356 mer Metal Homeostasis Mercury Detoxification Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 15051.2252 21282.3848 7013.5162 4377.6118 6449.8837 4918.576 17847.6224 6860.6873 12928.6508 21765.0432 14026.5523 290462.4709 5643.1281 22006.2853 26870.7066 27918.5734 27918.5734 4036.5817 129416.3132 13393.3794 113526.422 15053.6883 13703.273 10680.9984 10191.7332 16328.6049 13035.0512 53729.3501 16034.9871 11618.2577 9259.3172 28190.849 19165.6593 14402.4398 16846.7008 290959605 vgb Virulence Antibiotic resistance Degradation Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 5064.0784 7285.8046 2826.2103 2586.3997 5528.3645 4614.1248 12484.4905 3848.5833 4082.9161 4369.4988 15988.5877 3875.6628 3875.6628 6967.0418 3841.6489 5617.3783 5723.4915 6837.5216 2665.1302 8759.1908 4524.9607 7947.0322 2589.2476 6068.0257 4075.9948 311282788 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7675.2896 4973.4657 5223.448 9936.2467 4186.692 5695.3126 7926.3512 15488.2592 111519.2012 8625.8968 12990.8721 10098.0042 6546.6202 6546.6202 5321.6697 24150.1411 5716.3271 14236.6837 5118.941 6607.1199 3311.5221 6408.2435 17741.4406 6786.6275 19656.3688 10332.4836 9944.8143 7978.7809 5781.9686 6143.3882 4793.3901 7562.7489 333027061 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 16454.3152 26854.3216 6368.4566 8352.8563 13576.3849 8374.1534 60183.0931 6533.7523 11863.4841 17314.825 1571652.3328 12421.753 14919.0511 22132.2643 13349.8308 13349.8308 24128.1175 26617.9606 10074.2859 43627.7227 75903.9749 15188.1994 11607.4634 34093.0213 10752.1228 13095.8407 44076.7993 21274.9885 19549.8585 13976.8407 20109.9718 26641.4834 27760.4565 24054.0909 365900157 cbaa Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 88441.2206 11668.7972 143620.6701 473977.2511 75548.5046 9240.1709 22654.7983 41805.7064 45292.687 89968.941 148094.9925 63834.8269 1817678.4517 32907.5704 58414.139 81360.8769 96911.1468 96911.1468 238606.155 50589.19 36264.3771 46069.373 52117.2909 45736.9235 97975.1795 40737.8601 85098.7008 59025.5514 185181.6495 107631.1588 122533.964 28062.0603 28507.054 270797.117 107450.0341 126714.8809 91783709 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 22848.2947 17413.1897 15048.6961 22176.7642 12110.8236 34640.6262 55038.8387 12226.8149 11656.9195 46201.9337 775676.9706 14824.8058 27724.1393 28547.4457 15186.0796 15186.0796 10192.3237 33299.1769 16786.176 15607.1455 27581.8671 17035.0997 9113.264 13623.8079 33823.5431 12721.4614 71303.1939 20620.4241 18579.4523 9592.3865 12487.9495 12066.5006 11130.8617 30611.1811 109290274 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11450.4376 18903.3755 54348.6589 41382.1169 13565.3978 15239.7403 15165.9611 4202.7268 5837.3699 8989.5991 12749.0472 151152.2638 19677.0324 25881.5172 20924.8121 16721.3873 16721.3873 17137.7818 15231.3265 9693.7347 15112.0377 14364.1051 42056.1251 12190.0773 32299.6758 19327.7685 8526.9411 20665.0983 19260.4373 18199.0584 6169.3556 9112.0135 21039.8963 5112.1893 20293.183 288960200 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 30984.606 11888.9889 18609.0671 21487.9963 39827.2333 24235.1877 35910.7954 30364.0507 28395.4158 17508.8399 24877.8375 21518.2391 589096.8911 28314.878 21339.4171 28085.5671 21438.0232 21438.0232 21099.9547 42989.2546 25420.1695 19584.1529 26297.306 23996.2773 10011.0222 21147.1591 40225.4833 29625.3783 37881.0873 24042.3013 27709.1903 52942.9484 31462.3076 26702.6634 12130.1776 182571.9033 389736919 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 140959.1204 30319.5034 23719.2496 278955.1066 55423.6569 15965.8825 43313.3443 42971.6289 21272.2207 31364.163 119688.3776 23121.2454 561122.4051 34683.2333 37885.6124 38842.2545 50142.812 50142.812 21286.6239 65148.1504 19918.7469 26343.7523 55925.4911 44348.8003 74316.1893 17105.9135 32544.1706 16678.4975 95205.7977 54082.8292 33747.5568 23852.7045 32571.6192 32681.0648 25366.6976 33708.3953 256585852 nitrilase Organic Remediation Aromatics Other aromatics Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 12015.4727 71297.6895 25232.766 4192.1295 4407.146 4545.2271 20281.6338 3038.2227 101555.6831 6736.4223 5647.0603 5062.1265 3600.0798 3600.0798 9988.6377 12171.5288 8108.2236 7680.8832 72683.6226 283786.6121 19271.3855 3672.2149 10113.3076 12048.2371 23111.0298 11575.0693 10524.3719 4559.338 8948.228 9515.8186 3603.1899 9481.5221 169786393 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 18900.8092 77113.0472 17634.6205 4630.7091 8677.5903 4635.5039 7823.4394 9093.9226 16226.4239 11420.6974 219269.1924 5450.3315 5350.6033 6708.485 7754.4375 7754.4375 4901.9256 35254.6921 16060.5774 8025.7511 20999.0222 5082.5499 5604.3402 13996.1238 9816.1578 9929.9371 15771.7348 21678.9453 26754.1866 5199.7877 7571.6003 11374.2851 9896.6088 6815.7108 110599661 linb Organic Remediation Pesticides related compound NA Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 6555.6283 7367.4531 3531.7288 3586.1287 2862.4136 6830.1819 4611.4594 2985.2706 62878.8513 4729.8938 8764.8791 10346.7033 6134.3436 6193.4595 4839.3712 3409.8536 2636.842 6589.435 3115.7884 12285.5686 6940.5242 8877.1758 2504.7338 3840.2444 3597.2467 2703.0704 4838.4841 3021352 dsra Sulfur sulfite reduction NA Desulfobacterium autotrophicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 5243.8668 5362.1228 8108.0946 3092.2588 4289.3625 1930.6051 2794.3409 3888.5231 2559.2207 88679.26 3792.3506 4685.7012 2241.9782 2241.9782 5455.4193 7027.6833 6036.643 5076.9572 5895.1981 7632.234 2623.5975 7496.5345 2772.1591 11233.3073 5920.1671 7208.5934 1997.2527 4311.4098 3375.1048 3162.7411 10789.1329 119956834 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7493.7134 23910.172 6315.8994 15347.5614 10415.5744 5431.5375 7275.0474 4673.2491 5441.1958 8486.0649 10050.2268 132392.0359 7948.2987 9514.0448 14248.8049 2787.9105 2787.9105 4705.7698 12585.2902 9981.9765 6419.0923 20781.0484 12233.616 6130.4208 9205.6288 12278.5307 5659.6221 17605.975 13129.3845 10645.8811 5194.9365 7272.779 8214.0137 5387.8197 11338.6328 119535732 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 14911.1216 12108.7316 22433.8515 19949.8375 27541.7032 20643.8035 14365.6668 22323.2372 7279.0978 17146.4828 16817.7287 81450.842 360099.9597 22609.8041 24162.8073 15434.9533 14249.9853 14249.9853 17190.5939 32722.2114 15924.5568 29049.5273 19202.4011 30844.3327 9916.9462 12734.2733 23826.2419 17483.7711 43755.0893 24342.7091 179574.4117 12507.0629 14067.147 12239.2986 11657.1673 29690.0758 89317011 pcag Organic Remediation Aromatics Other aromatics Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 172885.6432 32478.0352 23561.1778 17176.7889 23406.8909 5921.5247 8633.3087 13323.958 41506.4614 95608.5149 25713.3214 31045.6034 920054.1412 32974.3675 168458.6009 23075.3738 23252.4561 23252.4561 16303.1196 38257.8511 19537.7339 17108.4794 57642.121 23213.7255 11050.4307 15647.5695 38157.168 38657.4772 75156.3828 29334.6608 43896.552 11497.6986 22542.4005 27244.3099 17024.0357 177374.3076 390570507 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 24217.2869 16938.5166 15294.747 24899.5499 29343.2637 135603.2873 27744.6312 21269.5698 14906.4949 20836.7504 36424.5244 15129.4056 532201.9295 25270.809 24705.0691 29391.6606 23324.4017 23324.4017 22522.52 38286.2442 42804.8092 35268.9279 43546.2708 36291.8234 12847.4962 14260.2816 46727.5048 140757.9625 55801.1512 37896.3179 36651.9321 22715.8804 17107.902 100234.498 16740.7317 33946.968 387875981 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6088.1441 12343.5823 9890.7863 64242.0805 8318.3416 4001.7216 5628.0428 6437.3764 34515.9534 86520.2495 5613.5541 9920.6679 5997.3582 5997.3582 6178.6203 8074.6324 11753.8631 5785.2524 32011.2235 10759.81 9872.8868 13494.9018 13566.3578 12675.5146 4379.5077 11044.2131 25652.8931 88800620 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 139116.2351 5679.7171 9098.5309 3869.7925 7947.0484 7507.3937 26566.9779 121058.0478 9118.0655 17576.9214 6958.1792 22360.7845 22360.7845 6687.2345 30736.4324 8269.7526 14644.5073 11076.1433 10046.6849 10488.115 12116.9741 12704.2223 15536.0273 53962.8592 11422.5373 13974.3883 10280.6769 16104.7312 17640.4507 12152.1137 12514.3461 389811933 ppx Phosphorus Polyphosphate degradation NA Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 33546.5181 14773.7115 5843.6819 13280.2892 15825.9959 12559.9738 19332.559 7678.3715 89649.5244 8699.753 25204.1336 10664.4564 9468.5853 9468.5853 13734.7894 21469.2328 12451.4414 11498.2144 20596.3552 12954.3426 8176.5514 12217.8254 12444.0826 34002.8878 99017.2021 13969.5616 10954.7685 52918.068 9253.1692 8092.5294 9095.546 9836.5178 78093524 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24172.9085 39361.7 6120.9896 9388.4917 9421.5961 19585.8059 103453.7931 11508.7473 11823.6992 37356.5996 20219.4134 404211.7301 12287.6156 14922.0292 25886.4611 34498.8289 34498.8289 7842.4691 30156.0845 16769.1322 789708.998 37049.6194 24076.2266 19000.4194 15921.7169 18973.2816 11315.1614 43940.3772 19621.7438 23158.2045 5760.6512 23702.3714 20155.5131 16970.6621 29327.9928 170027537 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 207177.0922 18133.9047 9406.0975 5081.3739 12368.6407 4306.4459 8037.5639 8039.6216 7600.2532 7974.2652 202504.5616 21835.7474 6188.7624 9588.8742 6294.0029 6294.0029 13139.7109 16720.502 8514.7856 55592.4414 33870.8862 6847.4237 27884.2079 3138.5436 14960.5942 4771.1035 17542.8451 9332.0599 12685.9744 7510.6334 5753.1432 3160.0534 9090.776 16192.2758 94498210 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8049.3843 8106.6477 21896.9642 6533.9374 2774.1633 3204.5441 3185.4474 3384.6705 199031.0242 3444.007 76307.7063 11765.7307 4412.0778 8280.8012 3697.5286 3697.5286 5794.3677 5492.831 4383.9321 3179.9642 14316.9351 36205.0804 4716.6389 4873.4086 2086.2171 2574.0672 3240.7183 2857.1558 10888.6943 297554690 amyA Carbon Cycling Carbon degradation Starch Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 46254.2623 18166.451 8160.9341 32736.6977 5045.6755 10325.7075 12471.4947 20833.0387 10497.8694 18963.8359 16811.7769 276376.2155 17721.2844 21243.5565 14372.7183 21399.3373 21399.3373 9379.2344 26240.7738 16553.0008 43691.4881 23508.4 15943.6346 10298.7843 26944.1818 32654.1311 18744.4853 35667.235 76734.9583 22240.0104 9212.1001 12420.7791 29971.3771 12165.5306 24711.0179 395774102 catechol Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 18284.7593 3948.6548 2359.9528 3875.0235 8593.564 3918.169 4976.8198 28914.9648 28914.9648 2852.2882 8171.0977 4098.9293 9329.3201 6504.1743 4694.5379 4015.3248 7435.1913 5238.7743 10253.2206 5623.8509 3852.1358 7179.4821 11280.4429 19044.0674 120405198 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 7088.802 2657252.0613 707333.7387 31695.9629 2866.6868 2290.5459 5371.6297 4478.481 74417.4371 6698.8071 6761.6893 4727.9536 3706.4884 3706.4884 3793.7093 14787.1847 7712.1305 95435.7473 9338.6414 5701.7452 3671.6237 2918.2138 11926.5049 5363.9603 18753.8336 7589.7805 11256.9278 5313.8222 5891.9762 7787.7313 4857.6768 34084.0437 10863129 nifh Nitrogen Nitrogen fixation NA lactate SRB-Enrichment culture clone HBLac1 superkingdom:Bacteria; 1061781.4369 17617.7421 225041.8352 475714.5706 653923.0332 377673.8338 211506.3233 282978.7716 342685.8189 284894.6774 391823.4759 404178.9417 3823335.2245 344919.0437 370460.8663 313525.2999 311898.3745 311898.3745 153529.6108 340678.9111 254732.6367 736883.8488 389422.1555 1150273.329 451715.729 243268.3411 586689.3143 305049.3392 1214304.7621 688141.0644 506120.6422 101562.516 408444.7478 163496.5321 205214.5134 2043678.2447 332284343 arsc Metal Homeostasis Arsenic Detoxification Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 5486.6622 6739.3225 4540.1813 3039.0496 2675.8498 3231.8745 6848.1103 10656.1028 206121.3664 6868.4663 7770.6237 11697.7846 4562.2918 4562.2918 2497.4256 3112.9051 5135.825 166886.7365 5447.5728 11300.2816 6976.3258 9258.5177 11619.1104 5268.3277 6299.7059 8118.1605 4319.4495 4830.8293 306982970 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5410.3024 5390.6036 1805.7149 4754.2558 5089.7967 2782.7738 8369.1095 6566.0908 5328.2562 9491.6143 5870.6725 2292.922 3245.2645 7209.3399 2770.9143 10191.0905 6834.0206 7983.7944 3659.9261 3800.8164 5085.9603 3230.4016 7911.1147 146310107 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 5691.9363 25629.5103 6207.1607 13534.5023 3536.8506 2953.5437 3527.6457 4160.549 4148.2004 5696.4984 6852.67 6017.6013 6017.6013 3262.563 10486.5528 5248.5663 3814.3381 5627.6284 8074.3149 16056.5361 9756.4794 6566.9276 2583.9081 5085.6576 10136.4645 2767.8298 373888631 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 5286.9776 3085.5684 4168.7103 6428.2232 4625.479 10406.6349 90263.0939 3936.6409 6254.3347 3353.6674 3353.6674 4902.0767 27206.2419 18301.5648 5335.0728 9964.2971 5064.143 5081.7442 3846.1006 13074.6175 2819.9676 25340.2325 11955.7833 13317.7934 8894.7469 7109.2923 5724.5401 3506.6396 9408.2132 271964639 ppx Phosphorus Polyphosphate degradation NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 40118.217 9011.0505 23722.0694 9214.8882 24097.0057 27482.4754 28248.4058 14597.5972 29337.5257 31352.9373 266179.2 16714.9705 16727.018 26527.8082 27578.8146 27578.8146 17128.8961 28356.3183 15050.6931 23019.4672 12153.6842 14999.8246 6426.061 11558.4556 20591.2557 26417.6983 37927.1425 44323.224 26232.9394 8305.928 21060.8979 15026.7736 11013.2394 9653.2956 74056686 amyA Carbon Cycling Carbon degradation Starch Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 65627.2125 14980.0905 9747.4968 15668.2925 14317.7462 20678.2396 89095.2182 35340.4526 20181.1515 41203.9879 259015.1349 16409.816 30144.6109 24127.4292 17791.9134 17791.9134 22882.09 117324.3348 21902.6458 12695.2018 37821.4478 39055.415 12372.2616 22959.0846 24642.6533 32471.8229 46508.4811 39093.6885 25300.3828 8368.4101 32142.8558 31332.0764 17065.6293 20803.7789 46981102 nirs Nitrogen Denitrification NA Marinobacter sp. BP45 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 5360.9723 4478.972 3125.66 3177.2961 2162.1718 4606.0587 3695.9334 2161.5744 4793.4078 7445.695 3499.6722 10094.4256 5159.8894 7515.4225 6336.0391 5762.0963 3496.8397 3617.9567 6425.424 4317.9563 9828.3684 7889.3146 10059.2513 2956.2914 3696.8831 5194.1824 2818.9637 11371.6173 372006791 nifh Nitrogen Nitrogen fixation NA Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 76742.2347 24906.4886 26676.5005 52773.2427 39385.5801 20423.6431 20799.3773 8762.3287 20072.9048 28405.9348 20574.755 755645.0414 42115.3283 49635.2946 93077.9251 76138.0279 76138.0279 17291.6128 66743.0958 25591.7161 69057.907 23110.3741 31562.4764 10800.0104 28997.2536 28293.7608 15402.9545 69231.4194 51497.2703 44512.9297 17180.0749 27268.6807 27495.4864 12698.9375 25020.1196 83633890 endochitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 4461.576 3013.1232 5020.0917 2724.1932 26278704 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4510.0831 355449.4873 9150.1916 7134.53 2724.9106 3598.9256 6301.0473 7382.0625 4978.5161 69694.7798 5659.7638 4442.2733 4203.9958 2037.3891 2037.3891 2989.7167 7481.297 7094.3624 4134.8165 8158.0703 16105.0389 3312.7102 3294.9141 6415.7546 9457.84 11428.1582 8509.9685 3342.4445 4065.8606 7247.4411 4006.603 5996.9215 121495592 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 55988.689 4601.6005 6993.1652 12501.7824 71073.5543 8372.9502 35806.5286 12564.2254 66533.5806 8722.911 6154.6721 10298.7786 18089.7506 18089.7506 8823.8897 20931.4361 6220.9573 16318.0062 83797.6141 10330.6901 23719.9118 9403.2836 9178.6821 16222.3748 10968.0072 11538.8177 49748.9718 4328.6971 40601.5924 12008.648 14877.6688 34424.8136 388007327 fosa Virulence Antibiotic resistance Degradation Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 153446.0186 37106.398 9783.9032 17767.3083 4877.4544 53062.0378 94236.3275 21803.8372 43187.6834 26163.915 34549.8914 520589.2957 21340.2391 14378.4334 56149.3478 47249.1842 47249.1842 17792.1027 45471.7702 13592.5648 32868.6146 21272.2619 23083.5517 17917.7645 28397.9083 20379.4032 20939.6505 105399.6867 83308.7429 29937.3431 34373.7756 28090.18 38139.2157 54480.5373 25411.1458 292654327 urec Nitrogen Ammonification NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 9118.3188 7101.056 9175.657 3865.6007 5402.0049 3967.4227 4307.5883 8777.0676 4297.5835 4297.5835 12423.7633 6858.4155 16543.1506 4659.7578 2647.1241 13554.9155 14603.4832 6160.6634 20501.6947 7775.5163 8312.8743 2461.56 3553.0639 4713.59 6487.6383 332297127 chitinase Carbon Cycling Carbon degradation Chitin Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 11988.6747 35475.0751 8159.5095 13831.0035 10621.2116 101862.7095 8191.822 36676.6864 188104.4026 12579.7399 9465.972 12499.5891 9332.4168 9332.4168 5521.9294 37553.8399 12254.4829 6933.966 16143.071 5388.6687 12808.4415 30616.4452 15898.5369 10062.2976 28601.6881 19576.2951 24239.2565 10921.1674 9760.4165 19290.3532 9475.8111 7572.3328 330501275 ppx Phosphorus Polyphosphate degradation NA Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7959.0593 3346.632 4708.1188 5018.2864 5018.2864 4975.2296 9362.5166 3997.0538 4777.5047 8158.0748 3625.531 5133.7471 4112.0701 6660.7117 1832.5911 3239.8964 3499.5571 7267.0949 308802856 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 29220.4733 8449.6883 11458.3531 4309.0091 13513.3251 14209.4063 5753.1283 7040.901 2977.4231 88661.7459 9286.9185 5678.991 6301.9012 5382.8081 5382.8081 3737.2362 12248.8448 11277.5487 9451.6907 4676.3637 5433.1153 5021.4768 4518.7777 11570.6646 8245.7316 20284.2446 8732.6959 10412.3506 36549.8796 5417.1301 7318.6479 3281.7882 7568.1368 220925115 amyA Carbon Cycling Carbon degradation Starch Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 1401024.8907 19804.6242 437095.1686 62133.8313 126362.7724 22421.9603 28830.6992 24266.4779 26261.3077 30078.846 51458.4783 44274.3899 690729.8701 53277.332 118095.5571 37979.537 32806.2284 32806.2284 43999.3462 49570.8136 56994.2086 44759.4478 166930.6661 135860.226 20739.1664 33439.3523 49911.4387 22335.6414 208794.8923 70797.2563 71112.6107 33700.4913 92462.2827 38075.2509 30748.2047 40387.233 115402219 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5493.5255 15509.8208 10289.4118 29609.0803 4115.8209 5664.2204 5963.7435 9438.8749 2699.6115 2699.6115 7103.77 7517.5744 5038.1399 28320.8912 2960.2687 7790.7116 2459.3254 27176.7275 2946.516 3540.601 3597.7532 78170643 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 110767.7404 4506.7283 4168.2882 3518.8103 5619.831 6771.1205 136697.773 6959.4755 5923.6026 4479.0808 4479.0808 5588.652 10705.9739 7672.1094 10286.2589 10630.2677 5566.0907 3322.322 4417.9224 8736.4282 3193.4875 16394.4488 6943.8284 9145.4027 3687.0577 5212.7946 5719.3065 4561.3344 11293.287 99080367 arsc Metal Homeostasis Arsenic Detoxification Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 65485.6887 29139.3523 101097.1062 16792.4426 17374.0108 6302.5939 4025.7013 9917.2608 3382.7152 6952.4985 8319.4272 7031.9822 239150.4321 33273.0049 15089.7209 8248.3315 9025.8187 9025.8187 10198.015 13625.5382 18043.9636 3352.6865 8319.9552 9345.7585 6088.9767 8232.6895 24445.85 10543.5615 37885.3878 18658.1499 18897.2381 11542.8608 8778.9557 10488.0948 6362.6168 4878.8368 119875513 nbac Organic Remediation Aromatics Nitoaromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 25975.8721 24715.2852 69237.2999 19181.2757 31558.7136 7793.382 151065.7018 19226.9876 15651.5705 28118.9473 21368.2963 10624.3684 512209.597 27367.5985 29331.0247 30091.6096 13719.3182 13719.3182 12698.5629 33137.9268 17928.3049 42759.215 71214.2292 32443.3225 13120.2723 11050.8279 21640.4608 12773.3738 54689.989 12526.0572 60001.924 16437.3982 15546.3737 23454.4736 13561.0272 26743.6539 52079167 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 6503.8615 6144.0931 6437.5807 6961.6011 4688.5073 3222.2351 5848.2462 5677.6931 3728.8017 131092.4952 7043.4609 6542.6662 3560.036 3560.036 6463.0023 12689.1479 6249.41 6279.6398 8683.1571 8685.6258 2893.273 3107.5108 6743.2734 3659.7383 16611.7613 10616.5269 11997.763 3355.4493 6546.7553 6458.9106 3960.0971 8223.0609 269211326 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 9533.6337 7504.3074 14059.7326 6758.9659 6925.9534 4980.1538 7356.1658 9830.6278 7213.4521 203938.0235 16085.4716 6156.1752 15336.2355 7911.2411 7911.2411 7103.0987 17553.567 11026.6951 19280.4768 11628.9613 15090.4056 6272.3131 4772.3228 12703.9663 6174.1174 22010.7752 14134.3376 14072.313 6143.2407 7192.7598 6591.6451 7611.7694 16273.4531 89361802 ppx Phosphorus Polyphosphate degradation NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 12912.4499 21693.9113 8108.8382 14206.4809 8640.2003 8032.5802 9630.9441 8037.7805 3270.1858 11132.5026 10267.1686 9270.1876 313817.9871 14127.2629 10909.7501 11264.2458 9013.5475 9013.5475 6943.6637 11954.0934 9867.8942 12544.4309 12459.6242 31633.0815 5256.5254 6523.9668 12940.1666 5265.3959 19204.9608 5650.3147 14953.9686 7064.489 8385.2781 7624.3792 4953.2028 13136.8585 116194900 pme_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 90192.4049 20257.3906 130674.2671 80287.8131 896509.8263 47707.3151 42513.5712 104245.5736 76047.1951 83841.6988 86558.7921 71898.3561 1898147.1858 95409.5132 99432.7455 140183.8165 114024.735 114024.735 119662.2074 107240.3026 60906.2594 82268.2003 120867.6266 79839.821 64379.0417 51833.8641 137466.8999 64650.8914 154988.9112 158935.2257 107490.1169 66317.0975 57084.311 110662.1571 47369.0348 112420.3354 384084149 PRK Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 4137.4971 2433.9809 2823.7254 5828.9506 3316.6849 9613.4361 5006.0983 4723.8264 5984.8448 2548.6389 3130.8726 7862.5322 1748.3731 2868.8978 4157.1162 21042.7936 365331450 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14111.1357 11463.1522 2890.7582 2766.8865 6628.0053 4779.0649 8673.6079 21527.5028 21527.5028 24531.6436 9775.4218 8146.9134 4026.7764 24462.5049 10915.1422 11982.9351 9949.2137 3554.7073 4921.6369 3917.0959 76056973 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9664.9164 5585.3409 3751.8716 2159.4597 15693.8926 3015.5236 101589.6005 5250.6027 5334.5331 49892.2476 13568.0114 13568.0114 2658.9775 8848.1184 99729.8479 3428.8138 8243.0393 7399.7693 2525.9222 8486.8542 8740.6189 2168.7149 11556.0121 5544.3975 5855.6148 2902.512 3839.9263 10677.1359 2586.4986 5376.777 359772902 terc Metal Homeostasis Tellurium Detoxification Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 61701.9834 28918.1907 12116.1477 11176.2464 13074.5917 25058.133 7150.7922 14578.1778 71388.8111 14104.3949 15581.6736 24490.1639 25292.5865 10561.7009 10276.4082 10276.4082 35136.5417 31870.6385 21037.0316 15083.1226 70280.9114 19380.3063 17326.4475 11400.0719 22465.372 21314.6882 72066.6187 24705.7052 27456.2454 11182.5213 18286.174 16586.234 11610.0759 26742.0506 348661324 ppx Phosphorus Polyphosphate degradation NA Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 27121.0225 8957.7154 12721.9301 9796.1449 15479.6324 7506.4501 9858.5289 9917.1345 5738.7996 293458.8272 14288.8017 17253.5225 14219.7289 5420.956 5420.956 11975.039 21528.956 13732.2557 29875.1934 24499.7112 15080.5909 14654.2639 7761.9748 20595.2279 10598.1198 43842.7516 19354.4385 15352.2677 8822.2396 8996.8718 14222.9197 10822.2823 11734.6988 260652439 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 5455.0677 20018.2416 5212.3654 21585.5529 17498.2746 3795.3812 1900.7526 3841.5565 2686.3614 73729.9525 4483.254 6875.8297 15337.923 4125.7733 4125.7733 3240.2132 30522.2332 5689.7152 11479.8677 6095.4267 2211.4287 3412.3243 9284.6125 2852.6066 31409.5432 5455.0301 10177.3725 3167.8664 5931.0179 4169.2065 2185.5439 9851.6138 359425729 pcag Organic Remediation Aromatics Other aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 13175.2669 16432.8786 29445.2958 19725.3574 33548.1548 7540.875 12951.1752 17732.5232 7065.3186 17967.5886 26827.2104 16242.6535 132177.331 9913.0045 23374.4984 52172.5501 17397.2709 17397.2709 7509.5244 13461.5519 17015.5052 22696.2981 33698.0154 53720.2252 7238.0564 6932.7076 13933.8764 6642.4038 27380.7646 29593.5451 35010.181 16810.9138 9196.6786 15007.9646 11465.5061 16784.1185 269979711 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 4790.3349 4720.1493 10319.764 2805.6455 8065.6793 6482.6949 3852.0332 2626.7766 8449.1179 25997.7542 2405.0835 2690.8971 2941.5774 384575239 atza Organic Remediation Herbicides related compound NA Vibrio tubiashii NCIMB 1337 = ATCC 19106 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 6736.7414 21543.8853 353673516 rgh Carbon Cycling Carbon degradation Pectin Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 81747.0188 58454.9845 48973.7402 46088.811 27850.818 7725.261 28659.1708 28049.8153 47706.3529 40658.2678 49152.283 59796.6198 704135.909 41862.0136 153222.8166 34908.2889 32113.0152 32113.0152 29524.77 80614.0999 35092.5027 52911.8021 68312.702 42009.72 24723.9315 39533.9776 57402.4959 70177.9142 111499.2383 61134.3105 71662.8523 21931.0171 41311.2402 59984.9355 29108.9809 53791.956 379257204 pcpe Organic Remediation Herbicides related compound NA Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 15780.9522 13614.1098 38497.3145 10789.2172 6547.2532 9827.6951 13483.0203 10030.3296 14073.4327 80849.441 237102.6798 7866.4438 16470.5654 17542.0531 12494.6682 12494.6682 14597.3287 13834.3985 11188.2935 10476.4775 15888.1769 16644.1569 7255.5037 9306.7975 27253.5844 7520.2973 32903.8888 29393.7573 49652.5481 9715.3196 10324.7109 14977.2035 56429.9142 18790.5695 68135527 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 10138.101 5268.834 14659.998 11323.5299 4232.2842 7093.9065 4612.7018 18173.7424 4612.0153 133747.2528 6862.2194 13312.4956 3773.0664 6292.9823 6292.9823 4580.1775 15455.2726 13836.7431 4990.9831 11429.7707 13247.7851 101761.4332 4380.7648 12057.8501 23111.5378 13849.1784 12395.0355 12492.1631 6550.9311 5907.1293 8198.65 6367.2112 8460.5877 302532393 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 36776.9845 14542.852 473427.9033 8805.9431 24472.2951 11152.8688 10028.1017 37292.2113 99089.752 15188.9356 37396.2759 37047.5912 742393.2977 32967.4115 33977.3691 42828.4875 53886.1953 53886.1953 14664.7494 59303.7227 37049.2684 52262.6058 107817.0894 630806.4049 38971.1584 24653.2442 32595.038 52523.1521 77681.1088 41180.7342 29867.7814 9625.826 33420.19 56215.9779 34227.5665 87633.926 121596146 terc Metal Homeostasis Tellurium Detoxification Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 21552.8084 19449.7892 14874.2935 16705.4919 7699.1446 19501.6248 19302.4654 8787.091 23069.7834 24472.6284 33948.8379 458460.4058 24073.3548 26803.8313 54504.1394 10252.9219 10252.9219 14465.5348 38881.3504 23181.9063 26144.0419 20658.2756 47419.949 169926.6884 14443.1028 38035.4453 29215.8105 55409.8231 13919.0863 24019.7717 13244.5812 17226.5906 45330.019 13822.521 52190.4229 261353897 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 59201.1463 15151.0324 4928.6095 5310.5507 9820.8359 38086.5391 17699.3164 133242.3447 6391.0527 13187.4733 10507.2264 20881.7713 20881.7713 4424.8799 21120.2543 15559.9105 11109.6275 180319.4721 12511.6316 5391.2413 9243.765 41293.9774 11721.6728 11344.6387 6629.6161 10411.5288 3384.1754 50646.0029 8814.6883 6804.2543 5916.1636 83026028 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 573155.924 325964.0515 410776.2087 545361.8601 366025.266 85136.8213 616734.2874 400343.461 229315.4506 541862.3193 241884.8362 275620.5403 6332387.7127 287911.5922 760333.3474 1001680.9177 329264.2176 329264.2176 238091.6017 312141.9196 251221.701 472298.6632 1145965.9613 337651.7957 250764.9202 231973.5437 405464.1705 304413.4858 730943.5056 349396.2577 337570.7086 261804.1998 224003.0957 295518.1829 405595.0259 659570.5504 290469648 xylanase Carbon Cycling Carbon degradation Hemicellulose Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 5041.9587 784158.5589 29524.9348 22136.3997 34576.9557 4404.628 4025.888 29960.4973 83809.9471 7255.4688 5203.9622 6398.6983 12288.3918 12288.3918 5414.4024 8860.4227 4896.2451 9144.2753 22799.4612 2539.4725 3649.2001 8381.2457 7804.0421 14633.6479 6910.0747 8310.5376 2526.9462 4575.1839 6280.9761 3420.0777 23924.4302 242123429 b_lactamase Virulence Antibiotic resistance Degradation Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 6591.1905 71656.6593 55006.2666 33540.4241 18734.3683 2133.2241 2133.2241 5249.3604 253690506 pme Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 10765.7511 8399.0246 8202.1638 3715.4547 18832.2099 15041.2833 15247.6632 16030.4847 17296.3896 97558.6787 10345.567 10659.7859 14236.6786 3559.0229 3559.0229 7599.9512 15790.6763 7888.1197 7575.2112 10629.7018 17733.6907 3288.6018 4245.3737 8289.9327 16859.3049 18895.3303 9361.5771 16675.0937 7790.7274 17267.0192 6935.4327 5697.4827 8655.3506 90331992 bphd Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6384.2351 4235.8937 4235.8937 8547.6365 140774.3266 2293.8534 12315.0748 2749.5752 8200.3593 2160.3326 163792345 tfda Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 74167.5667 170484.7214 65319.0735 128240.4592 216080.9049 105256.8408 53225.2164 108797.9882 45012.4856 69096.179 371400.9963 66133.6067 3413429.8834 151550.8965 70525.1605 104530.5956 138818.3296 138818.3296 58603.0419 98822.7842 58582.1213 411903.3826 219633.1902 189970.7642 97521.8927 71682.1335 107851.7436 59380.5317 285659.5737 87314.2483 82369.7603 78389.9085 47930.3871 58299.7223 140690.9304 140399.2972 299061533 arylest Organic Remediation Aromatics Other aromatics Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 29111.2383 38187.2491 9244.6018 23458.6969 8577.3938 25318.2998 35065.1291 10549.1027 48975.5844 26140.7833 31267.9547 291389.0352 30120.3355 44204.5859 23911.0581 39872.1405 39872.1405 22140.0361 44620.9866 23184.2332 22065.0976 27174.7057 27959.4755 12417.3572 68221.3634 19972.8478 12000.3329 53975.9342 24385.951 28087.0746 20934.0875 21604.2303 30806.3201 25230.6106 21800.0554 150836371 pcpe Organic Remediation Herbicides related compound NA Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 6323.6322 4262.5385 6080.1801 8856.6229 3670.1011 5770.852 6660.8512 4052.6861 92993.4529 6770.8147 6494.6502 4333.1867 2400.4573 2400.4573 5816.8482 12171.7696 10050.688 5661.7807 9109.112 11115.0102 4017.6542 4866.292 10445.7308 4108.5389 15781.4655 6002.0366 10194.7405 4507.6811 4401.4046 6102.0975 4311.3804 81697.283 303278902 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 11585.812 35071.8122 4131.3484 19115.7373 6886.5363 69888.4519 5911.7521 57034.6079 15552.8096 35933.5433 147616.5431 17005.2305 42216.1465 14426.6088 62614.0617 62614.0617 4942.848 28206.6887 32203.4093 6178.3559 15472.6237 16340.0089 5917.4204 5676.6515 14138.6329 4977.603 27658.7753 13513.0084 14680.1128 6530.9372 15130.0025 9424.0541 6282.1611 62273.1677 219739430 FBPase Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 98986.9529 19099.2995 39070.1263 12514.3756 14735.1269 938503.5795 176882.2377 144895.8835 21757.7068 21810.0703 38308.1382 35442.299 678115.093 36064.7397 29329.3185 44575.3081 21572.922 21572.922 20571.4982 70052.1353 18568.4525 51612.9675 133138.2989 36552.0286 24911.9756 20534.7834 53834.876 37964.5195 89742.4169 27958.7535 69006.3212 32026.9059 39832.0073 36531.8342 29480.9144 392628.4233 169125722 cda Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 7048.4836 12567.6474 8868.7097 5323.1308 3182.5789 1861.073 3597.9839 8963.7048 3629.5113 125312.7256 6187.768 5317.2229 8607.2937 7572.1262 7572.1262 5940.3595 19397.7412 7795.9784 5968.3554 10193.3288 12998.7739 4530.5175 12424.9779 3007.5905 23613.4811 7165.2848 20171.5879 2583.3365 6568.9081 8040.7554 3062.6548 7920.294 144905877 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6300.3762 2939.3315 3010.9987 4479.6501 6423.6528 7146.2302 3063.7776 4435.86 330466608 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 483677.905 18795.4641 226315.5085 48093.3936 147727.3088 11763.4347 50685.5871 483292.5733 38077.0088 76382.7429 84156.1264 37716.0044 1052203.7195 60847.3034 50343.435 105213.3806 36345.3103 36345.3103 35969.2991 89892.4944 43506.1217 66888.6258 72665.0502 142258.8865 64280.722 33321.0068 50089.4017 157424.0644 98136.4029 62984.5921 81834.7924 25465.8305 47221.7688 396560.3152 30287.0471 68246.848 157370965 chitinase Carbon Cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 10361.1921 36682.9391 2221.7852 3115.847 4944.3891 65676.2279 4301.1159 5106.0247 2253.8938 2253.8938 8417.5185 5121.2585 20650.6451 78542.463 3006.9065 10708.9819 5604.0035 10175.5495 3935.0897 16090.9011 8493.0146 3139.7034 3666.3923 6304.0162 299792879 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 4513.1943 4934.5308 12307.3805 4836.4034 4567.4879 10102.0227 5175.6945 82392.4655 4707.7086 6186.7386 7945.023 3898.814 3898.814 4111.0284 9128.1539 19782.9358 3590.362 10297.4647 6321.9705 15972.5861 7266.1539 10726.9703 3583.2621 6446.4154 5288.9203 3088.887 6553.373 133778542 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 20551.3933 7885.5786 14047.9839 16108.7083 12384.4122 22335.4422 32958.6994 17595.3334 12400.3837 11638.1033 320591.8467 17409.5926 18918.1352 98230.0398 40173.1636 42152.3218 144221.936 20529.1408 27756.1699 22060.2958 28607.5699 25608.2962 76745.3918 29591.1087 51155.443 11580.0867 13922.9153 14699.8518 9432.0706 24880.6285 226317663 catb Organic Remediation Aromatics BTEX and related aromatics Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 7794.423 5923.584 9331.0355 24915.7675 20588.5737 5454.2417 7525.2373 11386.6132 9136.7608 5061.0902 166283.1029 9253.9761 8497.3471 8139.0746 6868.2973 6868.2973 9442.2868 14864.3294 9506.5284 12600.2451 19050.4028 23166.3628 5927.7772 6905.0233 13485.5788 7412.653 23632.719 9272.014 12875.2541 4098.8469 8003.7613 7739.7004 5974.2781 16025.1022 357938484 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7030.7576 4943.6912 7582.1617 12357.8678 4662.9414 26558.8787 3941.0353 6814.6506 6754.1755 4550.7075 185883.1667 8943.5596 7628.4671 4881.2022 4881.2022 6637.4144 13862.1224 10159.3746 4517.4971 6784.9095 9044.0059 2830.6582 5866.5513 22431.7828 3905.8263 19798.2245 20797.0186 11771.9175 9275.2833 5673.1773 9118.7678 5543.3997 10628.786 84663956 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 10118.3302 13622.2893 6533.6272 3239.6442 4389.8451 6930.3182 75284.3148 5367.6838 20364.219 6815.0968 9431.1726 9431.1726 8776.2171 9758.8936 8219.0778 2424.8905 9341.1939 7101.0704 40911.5147 14176.3282 6948.8175 8465.5879 6212.9048 4852.222 36522.5695 87082457 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 6610.2196 534823.2023 12941.7895 4122.8084 9439.8763 8178.399 4891.9168 33724.8288 5370.6233 358747.4262 10293.1294 6903.0613 5324.6542 5324.6542 5796.2277 11757.9104 9212.7597 9831.4767 16296.5106 21414.2003 8125.9287 6785.368 19013.1718 12671.8011 36710.1702 7925.8434 11040.8248 4643.5657 25398.6097 9283.5758 6383.5167 5902.9571 224943072 ppx Phosphorus Polyphosphate degradation NA Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 11336.9009 18558.8718 20081.4287 49813.2931 86183.1689 9938.9874 17312.9675 27765.7955 18229.0425 172176.4214 35217.5064 307078.6098 21615.0469 21154.7093 43605.759 14980.4738 14980.4738 11410.0088 17077.6251 12086.4036 8538.4177 14306.9307 13246.159 5876.9049 12052.9295 28107.5943 5913.2215 31630.5898 20237.4767 24163.2071 7609.8074 11609.1707 12812.1167 226537.9992 13071.3875 343773866 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 10952.7926 7628.4353 33782.3412 9321.9554 80322.9068 6775.1319 8214.6381 16266.5721 6244.7389 221320.1099 14081.1647 11952.5619 9108.5268 6602.1219 6602.1219 7686.1235 19438.4979 14502.1314 11769.985 19072.868 15715.4996 5255.5832 14092.4967 13670.3369 5703.0224 26365.1727 9997.2591 14537.2113 7671.0705 12301.4147 10671.9926 6621.5531 21129.2821 299006976 mg_chelatase Secondary metabolism Pigments Chlorophyll Chromera velia superkingdom:Eukaryota;phylum:Chromerida;genus:Chromera; 4867.4544 7823.7501 8931.88 5433.5992 3996.1982 3534.3515 6217.5544 4445.5008 5059.697 201501.3254 6227.9933 7910.3528 4364.0882 3029.0788 3029.0788 3937.0699 9186.8217 6691.4324 7642.9451 10586.8169 5224.2019 4384.1103 3618.528 11609.9131 6465.7594 31355.9095 12566.8149 12367.2913 3289.6464 4610.5165 7940.2355 2950.2496 9434.2214 399012030 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7258.9075 22318.2738 21384.9021 3671.0584 3881.9436 2706.7656 5848.2458 6993.334 4979.2053 158140.028 8409.4484 6978.285 8096.0351 5515.0726 5515.0726 5352.2456 11988.0517 29062.7392 5986.5869 10936.1552 3363.6466 6433.9418 12558.5656 4234.0453 17938.6474 17700.9229 10807.3 4235.4061 4538.815 6358.6369 3700.0349 5604.8496 255295470 nirb Nitrogen Assimilatory N reduction NA Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 7685.2489 39219.4151 5408.3817 10087.2574 6256.9577 6241.0773 6382.6247 9088.7924 23054.7734 217639.8425 8366.1065 7158.9207 9128.3342 9116.9946 9116.9946 7935.7432 15346.8818 16363.1967 19304.5011 9067.0124 9462.3714 3024.3101 12854.6017 14144.394 7891.9968 32835.6272 17376.139 20910.6245 8587.0475 14157.0273 7811.2262 7547.4067 9347.2556 374369268 arylest Organic Remediation Aromatics Other aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 28073.3419 8610.654 19474.198 39800.336 13662.2209 4607.9088 9921.991 8899.9727 24505.9906 82807.5636 120881.9159 9693.8334 74961.8684 22472.6783 33180.7131 33180.7131 4668.6245 17008.8407 16979.2915 12395.3241 22394.0034 11477.7934 6392.271 13427.5616 10035.6083 7512.0829 58996.0732 12914.8952 18058.3285 10104.9523 9199.0092 21994.5759 9983.3441 8365.791 84388282 pgk Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 25979.3057 32497.8038 16174.0803 24465.9499 150492.7291 11614.7053 20851.0297 23884.9135 11659.166 30045.3877 24981.3739 15743.7052 878621.9808 34072.1808 34922.0876 40965.2628 20675.2239 20675.2239 19106.2082 54949.5043 26994.1562 41875.6042 30507.7132 79314.0894 15573.9696 13589.9207 40959.7537 12758.9849 39628.9588 8690.3271 30456.6178 13938.7181 19562.7339 25468.5675 11476.9887 32539.5424 251799172 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 15497.0079 5519.9459 153307.8137 9764.7757 7661.9231 10212.5021 32219.0152 21481.3253 742923.0056 12624.1281 23125.6857 8327.4829 6744.0181 6744.0181 6033.6821 23554.8961 9964.6238 10756.7505 15455.0354 26030.7857 5480.8157 7862.3318 40208.794 6686.5054 22768.5317 11516.516 24682.2385 16989.0993 15145.5328 12835.3258 31874.26 15914.9611 384220656 chnb Organic Remediation Other Hydrocarbons NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 35766.4245 6393.9745 6273.1467 18917.9729 10452.8541 4495.6028 1946.0234 6405.8935 24199.0784 9006.1606 197468.6775 6752.0107 8444.849 11701.0032 16653.8067 16653.8067 6326.2823 18891.3591 5407.6295 6600.2862 11283.1309 4972.638 12383.6908 9253.2986 8822.1594 6731.333 16290.0182 14407.6842 17749.7285 4024.3003 35657.0839 21747.592 18262.9362 5913.5962 211583855 cutinase Carbon Cycling Carbon degradation Cutin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 23578.3018 46648.2531 35012.7502 10701.7967 49303.5897 5212.6189 25177.9387 14019.3944 12943.3163 22286.4095 17490.1416 28743.6568 647179.0726 19010.0971 26406.9766 45094.2627 29335.2684 29335.2684 11138.3602 41362.3634 27176.9273 20543.3681 78099.4707 29456.7881 11832.5774 12896.2956 23708.3895 12383.4985 50151.8211 12535.588 44154.5403 14656.2906 15109.0408 21768.9755 11687.2372 44750.3389 70981957 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 20429.9386 17155.3006 2797.7883 3436.3099 5196.1628 6409.0891 4970.6791 3229.8292 4992.4747 2713.2252 2713.2252 8017.3209 7318.9761 3801.9738 7189.3597 6838.4992 10371.5243 2529.4913 4338.9866 6519.5002 2835.8616 6639.6244 4842.7239 56312056 tktA Carbon Cycling Carbon fixation Calvin cycle Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 132470.907 8016.0684 6364.6951 444356.9208 140284.6664 27006.7362 18214.5397 39052.793 32184.4754 28961.5539 454876.0246 20281.5645 28229.105 368516.1403 33886.0749 33886.0749 16582.553 47053.9214 36056.5381 36846.228 96816.6619 21876.5646 29748.0829 25223.0658 17592.0004 19836.021 120509.5405 25868.4279 131095.5384 19657.7116 33769.5917 16053.1206 19220.7151 27850.2116 225041317 ppx Phosphorus Polyphosphate degradation NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 78520.4808 54495.1615 71299.3065 1144277.5061 19176.8357 20316.2429 118655.985 338482.7067 51281.9563 105603.1269 57682.3967 58992.6818 1281723.9276 73541.207 110805.1803 70182.7411 86267.2093 86267.2093 321410.0169 131590.8521 53591.5646 66662.1627 111353.6973 107045.1123 60943.8946 53742.7057 84990.8629 156706.5399 241360.7072 84911.7491 88200.8528 82173.1155 57719.5981 273855.9014 79180.188 65759.1675 119195933 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 7399.5448 12516.8706 2415.8517 2887.054 5391.5504 16337.4807 27102.7885 169411.9435 9433.6334 3417.4502 4037.6675 4037.6675 6802.4495 15382.5966 8934.8468 18541.0751 18373.6794 6718.9453 3711.0279 8511.9194 10662.8992 4540.6556 25399.0418 5148.8279 6742.1914 8551.6161 5914.5678 8323.3341 3819.9369 12339.6357 332304768 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 4170.343 82766.2129 6657.0537 5097.4649 2667.1409 4890.5268 358238144 cutinase Carbon Cycling Carbon degradation Cutin Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 135542.4607 163811.5598 50409.7612 152842.5414 33086.4672 98566.9095 90656.2898 77769.5992 130184.5433 133637.6378 80826.1414 3498022.6657 102827.37 108428.3762 270851.1041 80826.9595 80826.9595 50743.815 113253.0441 95994.8962 228503.041 94742.2206 165771.6775 63248.1733 62990.0286 161655.6595 64096.8719 194232.9035 111747.083 166107.813 45101.7431 67220.4414 84158.2044 60640.7946 71865.7939 146405349 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 334188.2646 20283.6028 209276.2747 1472639.3229 438403.1529 98471.5409 147869.8192 570128.1322 195656.0849 262100.5767 260147.8151 254660.3046 15803121.889 489615.4913 370007.1353 625026.3346 344406.0911 344406.0911 183085.0127 298753.1751 141709.3406 627510.8096 405347.6982 180780.653 190250.4208 152442.6874 685761.7841 241565.3254 574665.9936 479520.0313 358036.9818 131375.3553 239937.843 267822.6329 411478.1449 786643.4127 338171584 tmoabe Organic Remediation Aromatics BTEX and related aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8615.4808 6180.8885 10696.1592 5514.1902 4694.532 5510.7489 5465.3264 7351.9346 6561.1735 184252.9153 9054.6103 6117.6651 13891.7608 5752.289 5752.289 5038.7523 13387.5712 11544.3469 7889.7533 10467.0133 12323.9666 6283.93 8840.4329 7317.0731 9355.1701 18473.9333 7823.6533 12216.2474 6321.4166 8425.7797 11298.9518 7210.1482 10346.1246 384523291 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 6000.6656 32613.9195 5519.8561 2530.1076 6168.4574 7074.3778 7737.5651 5214.4366 277390.3591 7697.4644 8279.387 10919.6714 6974.3869 6974.3869 5461.9454 12508.7012 9920.0551 7385.8089 6883.8842 6157.8879 3268.5836 4354.352 15271.1937 3087.957 18805.3549 13261.723 13290.9436 4890.173 8528.7448 6351.2235 3510.1545 7794.7063 84517380 amyA Carbon Cycling Carbon degradation Starch Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7598.8691 5907.5964 2296.5237 5812.439 12142.0663 3269.7038 68999.2728 4137.3989 7875.0293 7875.0293 21410.1594 12356.1023 2446.5007 2563.835 2704.2054 4921.0726 3592.6374 3362.9932 37094.099 38198157 catechol Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10638.6722 11299.034 14976.101 8607.3627 14901.6275 6372.8704 11385.253 9360.3579 3292.3286 10065.4737 9011.221 5236.4812 226572.1639 13321.5528 12193.5463 6120.3301 5798.1819 5798.1819 9089.5012 18955.0124 11895.5641 9392.4031 47596.6076 29057.1341 9518.9555 11283.4629 19755.7473 9661.3989 21094.6095 18022.3056 17506.2617 8514.5979 12334.5476 10340.6968 8252.9635 15220.5785 219852885 mcra Carbon Cycling Methane Methanogenesis Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 48999.1119 2242.4468 5088.5821 6356.6661 7275.7365 5369.6288 13874.4504 3398.7344 3630.4104 7089.936 9415.5246 4573.5886 1781.6391 4499.1111 356690759 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6701.2637 36979.1118 5961.5555 4979.4953 6701.6911 6701.6911 5055.7463 3026.5227 614453.1933 7289.8964 2319.3109 4813.1484 6717.1728 10254.9542 5260.6518 89145072 ppk Phosphorus Polyphosphate synthesis NA Microbacterium esteraromaticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 8622.2767 11559.2243 14355.5271 18166.434 11139.8724 6035.8263 8487.3641 12944.5762 7217.5447 7511.301 12577.5065 11954.7779 192811.7842 13422.2956 10091.2442 9528.0194 17714.8687 17714.8687 5389.2144 14689.7043 11210.5297 43978.8983 12069.3935 9249.132 11187.4733 15470.3915 12266.3335 20661.9831 19574.2432 11825.9434 15170.0959 10493.6303 14115.3486 15196.9242 10317.8578 13997.9164 162568543 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6102.4077 10947.6463 11114.5442 7984.221 5424.2615 4334.402 5043.8268 8608.4113 10589.971 12078.3803 4485.794 72948.6436 8254.238 4413.93 4867.9371 2960.3121 2960.3121 3264.8113 9087.7459 9466.387 6406.0902 7867.9775 10192.012 3656.175 7796.2575 42718.4635 5518.2732 9272.0298 5577.2183 3580.719 4548.476 2314.4688 9584.5629 300607584 nirk Nitrogen Denitrification NA Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 32502.8576 13926.4365 15149.8657 17004.4504 5372.435 9586.1 10514.1082 41606.9352 11992.5745 20799.6732 8988.0895 345433.4203 17158.9147 42933.3838 15573.5172 7636.1915 7636.1915 13108.155 21060.4707 24368.6813 23101.8346 16447.2682 26857.8426 9717.2013 31966.4071 22335.0415 10553.9661 28719.3822 20081.4135 19603.4488 9720.8001 16570.8699 14503.2838 22778.2463 23596.2563 211959444 arsm Metal Homeostasis Arsenic Detoxification Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 21779.4938 27354.6978 25626.7587 15803.4162 11130.8772 19730.5334 6525.4001 9390.5855 23847.1965 1051130.9322 12951.8998 8650.7589 28400.7987 9107.7307 9107.7307 5431.082 17589.9798 10796.0495 13302.8125 18093.0438 28066.5003 4395.2448 6365.9185 14325.477 14705.5676 23784.8033 13683.4618 15476.3785 4760.7006 8607.2651 15029.2208 8154.9907 8998.2748 126105521 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5608.7629 4747.9457 5633.3692 8104.8583 60257.0005 4866.7543 4357.6678 4357.6678 7333.959 7546.3484 4356.5599 6585.8208 6125.9319 363719562 amyA Carbon Cycling Carbon degradation Starch Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4660.2524 5761.9972 16468.7051 11712.5869 3273.8299 74421.5075 10706.9962 5345.9034 6845.0398 6845.0398 3109.4339 8815.6424 4955.3787 9316.418 8206.0785 4416.531 4198.2502 8426.5594 19579.3791 6402.0209 7888.9482 5693.2949 7144.1822 26278738 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 61444.8833 29483.4766 6453.1813 30072.9079 39145.3233 4750.7811 9777.8562 34383.7488 32774.0236 27401.66 34619.8082 329146.3203 49099.4782 17011.7047 30531.3536 42346.9676 42346.9676 6278.6159 47315.1719 10273.7673 23218.2698 54731.1806 396972.8791 28278.4613 18493.41 31757.0302 38551.5562 86510.0271 46183.7389 28291.1379 6310.591 34828.9687 29889.463 15034.4447 27448.3914 310913331 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7002.4031 4611.9733 7866.0408 6033.3169 4995.377 38215.7167 2086.323 2086.323 3379.8147 10686.2661 5194.6491 2571.4278 9036.1639 5625.777 12573.1761 2227.9102 7034.2677 6021.3429 3379.6947 349797344 cysI Sulfur Other NA Neisseria wadsworthii 9715 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 7279.395 6811.7414 31406.4417 561201.4854 49256.4199 11057.6369 6662.3873 7436.8913 5719.2775 201750.7966 10245.9317 9118.1897 46563.0465 4300.7952 4300.7952 3631.158 22706.6058 7315.2324 4449.0238 5573.8362 10397.9149 35243.2059 207492.9321 20103.6597 8238.1581 4486.3947 11328.1784 12194.8752 3569.4585 5709.9341 302679142 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 182827.036 25574.6604 927082.7536 158923.368 323152.0913 39897.3751 20963.2005 98610.6895 14820.2679 37485.3503 59671.1273 63309.7942 1045132.5813 52796.2635 133284.7866 105045.273 47955.7459 47955.7459 260161.813 58453.4132 67104.517 145533.5661 55023.9564 163674.1854 17012.5386 40497.2949 104994.5852 21555.0039 114034.6846 133897.6274 15996.4061 35295.772 69403.7877 14467.8387 140385.3368 257124887 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 4921.5851 7300.1716 5390.0921 4422.8987 3248.5732 3348.2548 4404.0316 5278.7518 135852.8758 7329.5455 6235.3204 4737.889 3572.4235 3572.4235 4125.2047 9616.2209 7024.0242 5137.2688 7001.0468 6030.4737 3511.7607 3149.5547 8847.8618 2927.4375 12649.827 5309.1107 8953.477 3424.9023 4521.2729 4758.8383 3249.298 11485.7146 359820915 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6979.5283 16248.2025 12059.4304 2459.6656 2707.1564 2123.0092 5385.9286 15848.0819 3592.2564 95232.7292 9194.5961 5828.9485 12206.6572 4587.3101 4587.3101 8157.7974 18042.7266 10969.3461 8109.2024 13031.6126 5712.3155 6285.3324 18808.1367 5127.6928 20329.2073 8223.7849 9823.982 4189.6087 6177.4115 13145.0348 3981.4909 5464.4616 333389803 mer Metal Homeostasis Mercury Detoxification Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 270623.425 81724.7918 147677.1918 252534.8053 707082.4764 152403.6122 201964.6674 133741.993 185368.8258 146135.0209 143577.5903 101841.2861 11987924.3785 161451.0719 172473.2319 232605.0248 164658.1346 164658.1346 103758.756 179414.4454 94059.6564 160576.6623 144175.6865 229774.693 104222.9068 104779.9416 149935.1604 63672.3365 241999.1868 98134.0996 159751.187 79722.5549 108717.7222 129901.1597 65326.9221 175080.5312 196178304 Sir Sulfur sulfite reduction NA Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 36692.3106 5960.7957 10405.7768 11992.6306 3829.1009 5943.215 12285.1844 6222.8587 37874.2013 154099.0481 24026.3527 9236.933 10808.0703 3958.4782 3958.4782 4191.2284 18407.9839 19245.8552 9276.7439 7506.0865 4116.7921 5772.2864 22156.3529 24205.5725 20386.5585 4284.4703 8889.4109 9550.5729 6185.4992 11849.2012 3830.79 10733.8818 291302150 amyA Carbon Cycling Carbon degradation Starch Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 4977.6112 2371.209 4745.5263 3081.899 5430.8667 4904.6044 4904.6044 7509.6901 4067.153 4451.1811 5536.4684 2928.0621 8237.8657 4418.9589 6832.6585 3285.1423 4031.0408 304320966 phytase Phosphorus Phytic acid hydrolysis NA Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 5837.197 11613.1369 4438.6808 2837.7155 3730.6234 9948.8677 8162.5443 19495.6149 4113.0955 4113.0955 8442.3163 9433.4212 6792.8724 4020.9198 6485.917 8391.9814 11132.9653 6899.3602 30231.5055 2283.9918 6224.9575 4806.0685 4210.3793 11514.7776 151302138 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio ferrophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9990.5972 9579.9764 90110.459 3710.5412 66692.0463 5134.8766 1747.5545 46307838 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4866.9821 5214.5763 2622.1324 2881.0255 5393.512 9218.0395 125713.6718 6643.1902 3900.931 1919.0679 1919.0679 2750.4329 10497.2613 6965.0166 7133.2214 5382.4936 3095.9662 7020.4856 3281.1031 18080.9891 4133.8485 5721.5055 3679.047 4475.8694 4296.7459 3294.8834 15866.3534 254282014 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 4297.1116 17372.7287 41756.8404 3991.2988 4113.6815 4790.5775 78697.0389 10335.8342 4375.1197 2096.9302 2096.9302 3427.5978 11007.2501 7096.6938 4869.7893 7656.9852 8389.4837 2395.8991 4150.235 5819.8216 9638.2264 6827.2367 7074.0132 2237.2363 3328.2652 3700.8858 3677.2053 6514.0674 153009870 ppx Phosphorus Polyphosphate degradation NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7503.3968 11779.8815 5570.0962 4741.8927 16039.8487 4088.933 4429.5447 4043.6062 7740.3983 4791.4563 2251.3129 88814824 amyA Carbon Cycling Carbon degradation Starch marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 21173.9464 16542.3664 13963.3324 8399.8357 11914.5509 40336.4391 10540.2718 16782.9377 31632.1008 11720.8836 348031.2984 30263.5369 25210.3019 11602.7347 21042.39 21042.39 36378.7151 37907.132 21427.7277 141168.3901 23599.2522 34511.8402 15102.1768 11144.2334 21018.9705 8907.7952 31313.6191 18625.7083 26743.3657 11958.7504 14264.8369 15079.154 11199.8447 430399.6235 54018042 nirb Nitrogen Assimilatory N reduction NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 26602.6357 18431.9816 13720.3561 4471.4769 2180.8673 3417.7311 4849.2854 7969.6878 95894.2896 5212.8102 3708.2588 8202.2932 7822.711 7822.711 4405.6011 15078.5358 9836.1418 36080.2084 9724.0004 4294.2711 6340.7613 10093.9568 8733.2889 36537.8285 10563.7904 8420.3331 3917.0842 5282.3294 6327.3435 3005.3477 7162.9842 115383232 narg Nitrogen Denitrification NA Brachymonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7222.8481 56711.4646 6623.6425 70988813 invertase_fungi Carbon Cycling Carbon degradation sucrose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 126233.5576 4573.6758 12406.5844 5360.7781 6050.3128 3427.2667 2427.0848 5464.0424 67956.8682 2974.9321 108218.8052 5023.041 4920.0104 9670.917 3926.9431 3926.9431 11206.1875 8679.7845 4809.1557 6370.6914 3390.169 4057.0653 12281.4784 3091.9493 15406.5622 8390.7927 10505.1444 3790.7581 4318.7452 8288.0304 3375.316 8845.5953 392951842 one_ring_23diox Organic Remediation Aromatics Other aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 4247.2239 9029.27795 3930.5041 4632.7165 4384.7014 6225.959 9925.3786 8786.696 4324.2828 5015.1482 3149.2847 2174.732 7727.2098 308921887 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Ralstonia sp. 5_7_47FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 102072.0941 47541.2283 13521.4187 11609.9833 8478.8824 111961.5326 19742.006 11623.0473 57698.0199 24503.1337 21278.7458 228725.6216 161171.8118 21393.9826 22493.5074 10434.6599 10434.6599 11774.6869 56404.6503 16936.1629 19039.348 33504.1381 13736.4605 7398.3029 11798.4068 19585.4097 22991.2317 34423.8547 20676.1906 22393.8936 23771.1101 26835.9017 23893.5174 12183.1555 15027.0964 171851849 terc Metal Homeostasis Tellurium Detoxification Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 4937.5804 5867.8241 2882.9731 2783.957 3366.8775 14723.1753 117924.9034 4883.5144 8955.17 2551.8059 2551.8059 3214.0262 8431.4867 4731.3683 5155.4988 7427.871 9902.2006 7113.3221 10648.255 7611.9506 5873.4907 17709.4707 10888.8003 299063709 xyla Carbon Cycling Carbon degradation Hemicellulose Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 235218.3213 43868.9978 10523.7083 5571.9462 8454.0373 4400.2298 5018.9122 7928.5073 111947.3083 3920.5453 7178.365 3546.8412 3546.8412 3982.5101 7425.655 22710.0625 8417.782 6328.4786 3722.0341 6731.6495 6202.3468 11358.3927 9079.8378 6099.1356 6385.5748 6439.715 9745.8082 4821.7132 5526.4774 83835987 phn Organic Remediation Herbicides related compound NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 14467.6326 7099.0569 15416.9911 8266.3655 328020.9409 13351.9441 16603.016 9860.8772 10801.3202 25259.2096 221462.111 19128.4243 17166.1597 8730.1718 8889.6969 8889.6969 8363.5139 25199.6976 15116.95 29764.3494 17280.742 19010.7626 9928.1343 11016.8775 23951.9935 18987.5523 43009.5779 22547.6026 26633.8949 12029.072 15643.4355 16115.2091 11890.0764 25469.5902 222080136 amyA Carbon Cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 5609.1116 4931.9192 6799.62 2943.9901 3535.3347 2868.426 2840.3083 4146.5001 3072.4517 80310.3333 3498.8695 11220.824 2981.7843 2981.7843 2893.897 7535.398 4190.7749 4195.8546 4090.6526 2215.6696 6933.1039 2411.2244 4407.6681 8230.375 294085739 dmdA Sulfur DMSP degradation NA Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 5052.0456 3858.827 2522.0429 31246.0423 5896.8716 4237.8411 60577.9514 4927.1855 3201.6918 3201.6918 4353.0981 7274.5864 3619.0852 9817.8418 5431.4092 8188.5399 6646.7615 2712.9903 20491.6223 7021.3374 2037.4388 5090.3246 5087.594 2999.1113 5311.9347 123967445 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 47120.1681 10608.8974 6258.2748 3609.6804 88450.8534 8494.9513 12905.171 26241.6339 239145.0018 8093.3453 16801.6856 11914.58 8881.8613 8881.8613 6679.3894 17014.5561 14433.6928 12384.3083 404331.9798 6317.7589 13703.9724 8728.5115 9718.1629 3891.4734 288409.9247 12091.0923 17396.809 12689.1665 7212.8141 18467.4026 6872.2933 368724.503 383933510 ppx Phosphorus Polyphosphate degradation NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 16042.3259 23838.4372 29001.2692 38117.5936 5003.9277 9176.247 5612.0063 5110.0253 6360.7633 5052.889 28844.0278 11221.2276 5051.9352 5051.9352 6567.2006 18872.2306 5977.1641 113107.799 18967.3551 37997.2275 7594.6138 6736.7473 6766.1659 6817.1671 16064.9904 5678.2697 16858.8114 4875.118 4949.8217 11558.454 7627.8294 44994.788 169239146 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 26657.2786 12520.3486 30056.9837 8022.5173 14976.9494 9562.0609 31167.2888 8163.7689 72876.2338 27414.2181 141706.0383 20215.8221 42677.0789 98912.4166 18184.9214 18184.9214 5637.0928 13108.4724 9610.3654 22674.9202 18188.8544 298557.5816 13572.4723 22180.9505 11561.0201 21284.4991 86054.3248 10488.4215 46858.5633 6456.7508 46288.2406 8916.4894 3992.6693 17112.778 88062822 arsc Metal Homeostasis Arsenic Detoxification Rhizobium leguminosarum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6087.6725 7311.4935 4061.0383 3869.8513 11794.5418 3715.2033 7223.5585 7204.9914 4000.6589 170688.6918 8568.959 5581.5851 5368.1055 4496.3382 4496.3382 7675.7522 14029.279 10865.6305 11396.0946 16675.2632 15782.8978 5056.0769 6245.2479 10686.6562 8928.6505 20302.6065 11851.6378 13714.3219 4453.9845 7417.1776 6886.0641 4917.1822 13128.732 167836550 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 271646.711 23433.2595 97783.8134 193502.0948 1175404.4452 56494.0606 371211.7549 92328.564 78263.7576 67359.7772 214044.6779 93160.1126 1312932.7593 170476.4807 152324.4562 300290.8722 111843.1508 111843.1508 66743.0325 200597.6674 90398.3326 103332.683 120898.553 72709.7711 176855.1072 94580.4026 168930.1401 96142.8127 252549.1279 89105.1642 109646.4501 83257.8325 148494.6681 123062.7808 121819.4663 95968.8225 227467048 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8569.5498 37208.1158 7442.5554 6457.027 11476.2208 17355.4303 3680.3736 9277.7331 9313.9367 10342.898 222141.3606 14680.1776 18946.7636 7235.5127 6014.2397 6014.2397 6346.1568 15496.8783 10930.1687 6551.3794 14486.2814 17857.786 5585.969 6655.1952 29202.9682 8059.5952 26134.4436 9762.0042 24779.711 8663.1554 10909.5327 18533.3268 9677.3054 15917.0474 392594423 badh Organic Remediation Aromatics Other aromatics Coniophora puteana RWD-64-598 SS2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 16943.6922 46396.6221 20572.1726 58450.3321 13302.5292 14675.8138 16657.968 7069.7234 42357.6553 54755.7977 19601.7147 286918.7517 18709.7498 183472.5997 97165.806 32705.6475 32705.6475 8280.7517 22729.8334 19582.3513 133442.3148 27421.6326 21800.6353 15077.7651 34468.6284 45938.3071 28703.8342 43275.9222 34748.1 83708.5313 20349.4447 19944.032 48301.5912 22997.9918 18634.7138 290955946 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 22467.375 185536.4544 22135.535 56962.7111 10295.446 192242.8079 16055.15 25499.2329 26542.04 30526.3946 28343.3515 985263.5051 34821.2595 75880.4306 44493.0826 18659.1006 18659.1006 18599.368 26605.2901 12817.5083 109845.1619 25318.0842 84125.5418 11607.7827 13903.9376 24368.9465 17472.6901 52810.2551 33844.8178 31557.1323 14180.5708 29400.5623 26741.2427 15758.5973 28637.1088 169237599 arsm Metal Homeostasis Arsenic Detoxification Halobacterium salinarum R1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7354.1151 4122.4096 5694.4409 4130.8852 9551.5911 4427.9553 5683.3675 4628.8196 3027.8046 2973.8088 8609.4625 1771.4051 3305.7052 3613.9678 295440094 xylanase Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4321.1233 5216.9626 4638.9371 4010.3926 5898.3855 8483.1849 5918.1835 206442.6091 4539.1322 5039.3492 4722.9473 6754.5762 12501.1687 4683.4122 13241.9444 11780.2031 8059.6986 5969.9005 5089.4056 8309.4777 5480.1397 20671.2451 7198.5648 12347.9313 3711.5541 6621.7391 7696.0853 4639.7054 22216.7374 313117088 chitinase Carbon Cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 13683.7739 6217.209 9417.7551 11251.2061 4350.438 11951.8537 6397.0465 51224.2769 27572.6512 17745.0014 247831.7118 11109.7248 17208.2167 55739.7538 7853.3576 7853.3576 5520.0718 15653.2689 8968.2824 14450.7275 9517.3828 8024.1583 11238.2313 10804.691 12051.5842 5622.7695 29199.3389 10369.3876 17898.7007 5736.2901 105590.6413 15314.0856 4414.7799 14734.1722 293614763 linb Organic Remediation Pesticides related compound NA Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 10665.8898 4669.2737 5674.7842 3727.7128 6165.4445 11199.2951 2753.1771 128843.4403 9958.1856 7058.3955 4346.2958 4346.2958 5223.7723 12065.1748 14897.3709 5943.768 8964.2541 13880.3843 4220.738 4434.6987 10546.7595 4205.7599 18908.5063 13051.2292 11625.956 5141.5951 6152.0229 7151.1272 5996.5622 12970.7559 359304454 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 9904.4293 12746.6526 7670.5132 27407.8348 5987.2738 118499.9773 8619.7596 8955.2024 12005.9683 4585.6197 4585.6197 3070.6126 13916.446 9452.506 4980.7635 8081.5896 12373.3141 2834.5469 4545.0005 8573.2107 3946.3628 12247.0623 9985.6 11921.0224 2537.5159 4946.7867 5160.4227 4277.5413 9428.2623 76056967 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14364.917 46673.727 7550.684 7109.49 6715.5789 8233.2341 49293.1622 8761.2271 190923.4966 11761.1119 98055.5937 13177.0773 13177.0773 3338.1063 116501.575 13001.2552 40926.2635 7700.717 5592.067 5298.5212 18325.5009 18850.4117 42225.9734 19699.9502 14633.912 8149.0546 3088.1035 11476.0321 11433.9198 5945.6427 320106919 ara Carbon Cycling Carbon degradation Hemicellulose Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 8378.8849 40609.0074 7797.4487 2897.3915 6144.9671 12755.8438 2776.5861 180025.0163 4065.4382 3633.2708 4262.0624 7246.6602 7246.6602 5790.2931 19616.7975 4334.5478 7256.5814 5322.8654 5315.8662 2887.9733 4602.3034 10107.5076 2746.6156 34588.7974 3975.1417 9726.2329 2716.1603 9951.9408 4684.4026 23490.9774 335424632 mer Metal Homeostasis Mercury Detoxification Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 9271.4007 7599.6629 5516.7297 7389.1315 4162.1789 6647.405 7564.3254 6363.5617 71014.645 8664.9406 7882.3924 5067.8951 3541.1368 14236.93 8129.8557 10221.9113 8811.4869 6623.7666 23481.1312 5724.4078 8956.6083 6201.5615 14878.6006 8012.7222 13782.1206 6289.2858 6817.8823 6094.1794 2734.6343 8384.6979 308213049 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 69661.2556 21350.4769 17434.2203 18758.8987 4559.8215 34716.004 35836.903 107448.2888 63907.5367 53098.1037 50770.4203 681490.5056 32881.0414 78601.2597 88946.9741 71661.4682 71661.4682 33751.5542 104108.778 71600.9342 51220.9465 126034.2023 44086.2154 50021.2485 51888.551 168250.4686 83888.4571 142633.9552 43990.4943 58839.2969 34406.4069 76425.5378 55466.0312 49156.3841 49611.6186 320107745 RgaE Carbon Cycling Carbon degradation Pectin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 9411.8547 6046.5821 6322.0109 14309.202 7081.7444 9892.9666 3783.8076 7842.3422 8275.9789 4317.106 194796.58 9901.4548 7408.8198 10258.1019 4965.4548 4965.4548 10552.987 20704.6774 9937.3537 33918.3043 16782.77 16718.0504 4644.389 4920.019 17153.6058 5186.3879 19337.7281 12662.7023 11968.3258 6676.3772 6636.4926 7553.8677 5256.3113 13578.1649 87201211 terc Metal Homeostasis Tellurium Detoxification Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 18605.3704 5686.3655 807585.6645 14291.9367 11129.7509 12357.6318 8715.6333 3904.0287 18314.906 12473.7959 8668.8383 1707052.3166 15139.4614 21668.0488 8717.8428 6628.1765 6628.1765 8033.8468 18240.9832 9013.5223 8186.031 32346.8069 13132.5439 8370.3673 10709.83 29313.7644 9488.2687 40900.1089 14090.1071 20033.3485 14059.9855 10791.2945 10115.3638 6337.2813 20524.1216 192286281 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7613.1872 1955.2742 4370.9489 12544.956 4154.3851 5436.5338 2774.3783 83533.5038 20220.8465 5330.0738 2743.6261 2743.6261 4210.1373 7468.5678 4866.6529 5093.2628 5963.1665 3536.2026 2966.3511 6637.6814 4564.6865 21794.4175 7751.982 11903.1674 3749.2686 5757.0333 10833.981 2978.4191 17956.8037 340557428 TIM Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 11674.2341 13824.1842 11465.836 2528.4696 4529.3627 29073.2671 3425.8788 139836.3298 25869.2708 9303.0075 13322.4054 4463.5239 4463.5239 70105.7854 10334.7593 4415.7021 8766.5689 92582.4956 14211.69 5277.7833 10120.3236 6257.952 7586.8461 20829.4797 7188.649 8339.3412 3688.4073 30601.9776 12919.2948 2045.3308 10407.2153 262375071 xylj Organic Remediation Aromatics BTEX and related aromatics Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 12593.8713 4791.0595 10027.3162 8832.9721 10534.6315 13844.5455 9009.7785 5829.6585 10686.1811 12765.3066 8056.5055 10165.7078 14085.8357 166857.4798 13610.9582 33896.0085 33896.0085 10565.874 30956.5584 15421.872 13988.7359 15648.1614 39251.2119 8199.3541 6946.7592 20713.8744 6316.5404 26884.3182 18469.7339 18428.3379 8783.1081 11698.6553 13740.5995 8078.2196 17879.3563 302675657 bph Organic Remediation Aromatics Aromatic carboxylic acid Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 29389.1259 27112.0142 29719.4429 29674.7397 9165.1925 21068.571 39338.1768 11173.9154 19542.0587 29708.2024 14816.1185 819985.6312 33164.4134 27677.0971 22171.6468 15339.9537 15339.9537 17381.4231 34887.5761 22960.1711 20612.512 28315.8693 36836.4803 25473.9208 24598.7047 32168.1721 13333.9488 54698.7203 30678.0107 37974.3427 17248.3001 30541.7107 19280.0833 14198.1754 34297.2054 374413765 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4086.29 2272.6664 2272.6664 359835666 cutinase Carbon Cycling Carbon degradation Cutin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 10893.0967 7688.3755 5741.5451 10916.7634 18942.1825 5644.6056 6679.095 2095.8673 25487.3482 5438.4832 4975.8543 90487.9915 18970.6372 4195.3626 4521.1516 4663.3119 4663.3119 14583.545 9321.9946 6979.6424 5640.3616 5328.46 3945.7845 3368.6388 11087.7046 2985.2798 9784.668 9209.124 8353.6796 3401.8267 4932.4274 5757.7305 2779.1584 9554.4823 260218053 ppk Phosphorus Polyphosphate synthesis NA Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 4585.7097 4802.1827 12030.4993 8523.6348 7883.0632 3541.4482 6987.939 4935.4364 3707.9751 72282.1658 5431.6817 4090.2713 10638.4431 7063.4233 5849.0001 5919.9123 6866.5172 3852.9903 3216.9565 8918.3306 3947.4459 13556.5321 8217.7886 8599.4016 3723.5213 4871.9796 3888.0532 3885.0399 10682.7712 20804135 phn Organic Remediation Herbicides related compound NA Mesorhizobium loti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 15989.0892 24424.2075 53865.8995 15234.358 5051.2809 8512.9051 7952.7991 7366.0829 7830.7246 12293.9264 12113.5953 183677.3466 8032.3098 55473.0282 13730.4011 6727.3356 6727.3356 7486.3434 22267.2833 12320.9627 13527.5618 65368.6679 12219.9258 3734.9279 5195.3291 12815.5801 5105.9798 23249.1043 24172.7854 18416.3283 6002.9051 7421.3012 9651.32 8692.5492 12256.0531 296255634 SoxC Sulfur Sulfur Oxidation NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 9856.5179 5879.4777 3354.7274 26067.2113 26067.2113 5715.901 4577.6347 2806.8432 7021.2596 8092.0751 12032.7725 4137.7851 315250976 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 16886.7602 13942.4648 27862.4447 296206.3883 3834.5742 5575.6204 3710.5668 6675.021 9368.4422 6289.1907 141059.478 16705.0661 6726.5771 3613.2426 3613.2426 4515.2109 14556.8193 7401.345 6644.8969 6219.982 100520.7499 6595.7199 6828.6702 20405.3725 7133.2781 16213.8883 7643.4389 21898.2226 5514.9271 17669.2715 6082.6218 6022.3263 8284.397 29897375 exochitinase Carbon Cycling Carbon degradation Chitin Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 9692.8647 5380.717 166014.7748 2483.7787 7467.2871 126893.0075 156254587 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4955.2526 7736.0488 10416.7614 2501.8908 3184.8781 19845.3197 6534.7996 6413.1068 108361.1105 4319.9497 7897.5558 5048.3313 5048.3313 3711.5048 40357.6412 5884.6721 5481.0433 7415.1403 7543.4215 3191.2972 4026.4706 9974.8766 13273.1784 6436.8104 10503.7766 3312.8768 4169.0364 9311.1461 2914.2478 5058.3402 104780601 narb Nitrogen Assimilatory N reduction NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 58417.4682 34402.8739 28873.4724 970475.3801 29528.4206 61930.3618 236684.3675 64956.3744 46402.1127 697015.51 81351.4111 1081318.7946 54840.4184 106261.7972 77109.5773 34703.8859 34703.8859 57172.1305 93386.1151 262579.9246 352059.4466 88618.5443 79832.8734 28411.233 51194.8802 64995.8554 109324.9289 253281.0661 62923.6143 102313.979 98743.0351 78060.9142 94582.6585 54225.8675 82431.7635 348173342 ben_bcla virulence NA NA Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 25333.5311 18251.1302 9172.3589 9360.9686 3491.7996 26315.2607 46890.1055 90404.6669 14501.0422 6551.0182 304283.9653 7135.0354 8391.5722 18021.7208 9942.8201 9942.8201 9531.4864 11689.9377 15914.9665 4528.4222 9665.5492 20203.5157 70635.6298 28923.0886 40912.5863 13287.9337 8779.5841 5349.2125 20751.6201 6890.834 7351.6504 341868965 arra Metal Homeostasis Arsenic Detoxification Geobacter uraniireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 35322.1683 22560.4182 30488.3922 27954.6096 18369.8993 31100.852 11700.4905 26981.3642 42549.2632 38407.5835 1589295.8637 39317.141 47859.6474 31474.7725 34852.1015 34852.1015 37280.9865 51774.9559 30779.2089 26962.3251 62529.2881 71968.2231 45437.5464 37442.8168 51630.4514 21471.2784 112176.8239 59316.7931 57418.4441 14451.5151 50938.0158 54903.7157 20011.4393 59608.2476 421953202 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11938.4143 41585.9514 9981.8056 11026.4025 9906.082 9047.448 6704.4316 11478.3606 8862.4586 6700.2061 212913.9223 13712.2242 11236.5031 11730.6873 4837.6069 4837.6069 9051.3121 16593.1962 12596.6104 10937.0628 14639.6712 12552.2487 5875.9923 7191.9731 14742.5694 23682.2999 21930.2007 9528.6561 15084.8885 6830.95 9656.6463 9951.4043 7065.0232 17507.2571 15597770 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9514.6073 13026.7034 9637.197 8797.7636 6058.1296 5701.6172 12025.6235 4662.4576 20099.6137 3033.7453 3033.7453 3669.7225 26648.6406 5202.0021 4881.637 7751.1488 4595.696 3202.9391 2830.734 8723.6311 6114.7568 12571.362 10314.819 8841.2953 2858.1124 3835.5827 3694.5067 10241.1593 326548024 amyA Carbon Cycling Carbon degradation Starch Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 4089.3827 1943.9731 2321.211 3554.0937 4898.0092 5295.5751 32281.5819 32281.5819 9403.5698 4365.1892 81506.5156 5018.1501 4876.4586 2754.1488 6707.2388 5672.7474 11084.4965 8591.7254 8341.9715 2351.1802 4116.2819 4741.3329 2644.624 4990.0707 13421377 linc Organic Remediation Pesticides related compound NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 51651.3338 36460.8575 22775.501 54681.1171 8144.0664 76318.336 43434.8451 4308.0623 15346.2692 12231.7094 8576.1562 218981.2526 18457.4673 17411.495 17410.2613 10424.6965 10424.6965 6382.5116 23557.5678 29920.4207 6952.7065 20608.5882 7696.9329 40588.9804 16967.6556 78775.1429 20883.5338 34220.7941 15289.2731 37632.6609 25118.32 45270.8864 24856.9678 9019.4816 11412.6427 16081724 gdh Nitrogen Ammonification NA Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 14365.6341 8872.231 8410.2404 9691.6749 4524.7836 12931.1898 2170.1349 3050.661 6106.1639 379708665 chnb Organic Remediation Other Hydrocarbons NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 40882.8708 15862.8493 14493.0196 25332.1022 19313.9666 7507.1307 53277.3587 21372.5197 7790.0223 10139.0361 7080.7441 233241.2322 14679.4212 12536.4881 21743.354 18238.3865 18238.3865 9112.7026 21920.8358 9192.4613 24031.5232 11321.9371 9605.6685 8116.9637 7422.1134 18765.005 7478.3401 40496.5191 8877.4297 15695.7613 7135.7947 10441.1724 18532.2349 5594.6279 13097.6622 89512880 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 129764.9907 26069.3346 211730.5809 207759.1491 114781.5388 54162.6899 92829.3546 135955.6647 277215.9534 145473.9871 237090.8462 198391.0193 3079112.282 140996.1518 496543.9445 1826878.2255 226702.9797 226702.9797 95546.1655 180610.4715 99946.6805 716562.5148 211651.4607 244020.9097 72252.0084 106502.8874 108473.2992 108349.6998 279008.2465 133672.2775 159167.3206 134539.6223 146663.4359 141997.6792 64854.8739 1799030.5698 148512466 proO Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 532510.935 2227073.7026 208360.4993 465933.1262 38294.7837 10837.8202 163584.1066 260080.825 47284.5718 179493.1397 96499.1595 64397.6064 1387403.0428 143787.025 120031.2524 65587.311 71990.5867 71990.5867 119974.449 227505.5698 72461.5668 49792.8176 162807.5626 29663.4303 253935.3869 90696.0899 127048.3312 115485.7061 321526.5211 312509.9571 279804.7236 164450.1719 89875.8989 372071.3297 46733.5567 417783.4135 192897618 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9650.0386 8818.1999 12209.1719 4918.8381 2229.4513 5326.8265 4183.9758 5379.8082 4776.016 12948.3646 4154.9292 4154.9292 5203.0236 5771.9141 3656.1701 3451.276 4056.4216 3757.5715 5575.2889 2107.9196 7350.3282 4304.2985 7200.1213 3641.1117 2634.1899 3808.0647 5255.4689 307150311 PRK Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 136027.789 3180.4968 5721.056 7340.0085 2983.3575 110269.9298 3878.3072 103605.585 2723.7661 2723.7661 11100.0858 4084.2943 11034.6636 7913.5692 6497.1329 7810.9579 8859.5426 8094.1768 3903.0123 3020.8203 4291.8619 4568.239 21783.2341 302520995 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15118.8282 16051.4131 5051.0577 16818.2591 8654.4471 14005.571 17722.4274 15426.2369 27295.1637 39582.0052 27039.4589 3947426.5006 15087.3928 18725.4389 30555.3715 56339.9876 56339.9876 18755.8008 41156.0092 9536.7988 13235.6504 35569.0632 9429.9713 8175.5289 22217.5948 19832.4572 11541.8676 36718.1747 16671.6455 17182.504 12385.9021 15707.0918 43160.013 17544.4229 8800.0437 313895321 nifh Nitrogen Nitrogen fixation NA Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 528174.1559 153258.1324 350388.8654 1870625.4574 885202.4729 141862.1593 361543.2494 315561.9031 327539.0282 357333.3679 501111.5252 262520.9126 6785093.3341 377824.4632 369738.7393 925781.453 353353.4657 353353.4657 432740.8684 582775.1789 222203.3143 473658.3949 572962.4777 610053.9672 292028.6773 183123.3682 299830.1217 235215.8499 605322.8235 375175.85 387635.3002 231590.3436 241181.0933 238290.7715 277202.0867 604189.4847 116671523 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 113829.8017 54156.9512 45696.5735 42146.8213 951859.1879 26901.6507 45642.2203 92249.7769 70377.5158 54560.6621 125028.5861 58536.6938 2373816.582 69197.0726 110209.4206 86300.9922 71105.8082 71105.8082 70492.2556 232123.9096 157054.3137 92364.6692 80578.3325 51931.1382 38907.1702 39203.8135 57941.9127 40813.0937 127358.7398 65581.3254 91086.0673 62907.6648 49054.3584 143962.4866 151544.8306 75225.9403 226363977 badh Organic Remediation Aromatics Other aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 14539.7759 5538.1974 19674.4204 3350.2117 6397.163 2471.182 5880.8241 4043.0565 4407.7416 161511.8619 9844.0137 19364.6966 12459.5864 15773.2258 15773.2258 6197.0817 15117.1305 16103.7682 29899.8994 25957.974 8001.8359 7199.8244 11827.1646 14026.5808 6966.2927 17931.8904 14640.2488 14973.5314 10513.8123 4305.4267 7189.712 5092.7894 9630.5634 86278357 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 21797.9086 8797.6137 21743.9501 14751.4778 5774.7268 3274.2509 9562.2794 15835.4108 5591.4104 182470.2972 30567.0453 7843.204 13951.791 7804.959 7804.959 8207.3579 49873.4571 28130.8248 11077.5088 27016.2496 10131.9574 6418.8827 6913.5195 27363.1612 7318.953 37198.496 6806.6254 22679.2613 7774.8044 12179.6682 15330.1926 5220.6926 94881.6861 229566583 terc Metal Homeostasis Tellurium Detoxification Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 4491.8123 5699.801 4530.7546 4539.568 6952.7753 135328.0176 4024.2982 4806.9038 3244.4123 4416.0608 10965.7064 7860.7949 22689.1427 5930.0322 96021.1253 7316.949 6921.947 2762.0621 7266.8093 5616.0747 113880899 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6112.9474 6016.5556 4092.2536 8604.6831 5789.5055 3813.1126 5757.0044 3308.3102 6713.1497 17103.3033 16256.4162 115167.8632 9462.1008 7120.8323 6071.5746 34251.9406 34251.9406 4172.989 9081.768 4265.0076 108169.0118 9831.5253 4182.0636 10554.3324 7523.773 11432.6756 5482.2495 11051.1736 5647.5176 8869.0327 20412.8763 8659.82 10052.5238 295411260 B_lactamase_A Virulence Antibiotic resistance Degradation Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 91337.0902 383140.6099 176551.4306 282650.4069 185133.7719 26710.7585 50307.9961 43609.6118 263393.2769 266806.2793 188737.5854 140174.6617 5301326.4278 61344.0117 109736.7443 89600.8606 110951.7869 110951.7869 43035.4379 79427.8855 46256.5816 1043209.711 94048.8041 49993.0576 41176.1682 101170.0512 87262.4322 75865.4817 127290.1073 67587.7505 101048.2455 60594.7731 60182.2305 87566.3391 45132.0934 149242.5886 302682021 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 17040.1878 8235.0121 7862.6774 3237.4982 6848.9886 11504.0321 6615.2236 7275.3063 265342.9384 22193.9607 8012.0775 37716.1097 15558.0597 15558.0597 14972.7297 7927.823 20254.179 45808.0769 4794.9994 7365.2002 5415.1862 14059.1864 9373.0139 14487.831 31546.2545 8370.6215 12222.6185 11246.6897 9040.1221 9178.2239 163744445 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 5783.3201 5934.124 8832.4182 3159.1713 9400.7276 6533.2705 4671.5521 5412.4325 3824.0008 175580.8496 17054.9723 22505.1611 6653.1613 9120.3854 9120.3854 11328.8107 13359.4081 11106.6108 75841.2917 9197.944 8814.1176 3143.3793 7395.5858 16947.7235 3385.4585 14681.9803 10728.1634 11268.0355 6071.2826 4891.363 9907.7563 6700.9 11080.2789 260222035 terc Metal Homeostasis Tellurium Detoxification Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 61827.6661 34865.4812 17680.3202 74323.2606 35775.0323 17358.5601 22595.8756 18933.1323 11075.2999 19399.5409 39288.6265 40211.4639 366636.4098 25397.2282 29751.9222 19679.5668 309100.1458 309100.1458 26198.6305 41518.2383 20935.0167 21971.4849 26302.2379 32495.0195 14456.9724 25933.1032 65723.3311 22747.0337 46966.9941 19250.529 30657.6652 14595.065 19766.3577 18337.0706 15533.6239 34304.6135 111919316 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12675.2799 156665.0779 28991.4762 15149.7388 7605.7749 4609.1423 9216.4254 4412.1354 12214.7305 10699.881 9577.7224 250335.401 145270.1652 9615.0282 20345.3961 10866.9845 10866.9845 6502.4718 20477.4622 10035.0297 8239.0616 14011.3477 9496.6341 5167.6479 23499.4346 13011.3491 15792.1173 14781.5728 7909.133 89326.9306 9319.0568 11610.4452 9445.298 9052.8735 8741.4896 163739537 pcag Organic Remediation Aromatics Other aromatics Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 5083.9236 6828.6869 5661.4253 8940.1701 2283.0002 4164.6771 4355.7388 2950.3793 1213620.6691 4898.0516 1975.9479 1975.9479 4040.8148 8909.6397 4884.1695 6120.6822 2469.3226 4977.2934 2336.923 8839.8596 8794.1181 6287.559 2045.7569 6762.0953 5432.9583 3003.3798 6512.8483 148832003 alkk Organic Remediation Others NA Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 39667.0027 32049.8797 33691.0362 12409.9064 7939.7667 12595.4492 20450.7435 13656.1324 24281.6689 31146.6559 49707.5175 1463345.08 29549.9744 24725.5533 33061.1139 74388.922 74388.922 19490.4005 30267.6925 13649.9728 135275.1954 207188.6124 14086.4842 20484.0901 24525.6925 25219.6648 34067.8165 71141.8452 58877.4703 26721.0666 31585.5347 18035.627 56217.5474 29959.9021 29763.6505 333488471 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 108281.5713 13280.1696 118213.5288 36239.064 60084.6997 166748.7897 62886.8854 105209.995 48246.9741 59916.1292 102781.6777 67459.8074 816808.1585 49133.6766 121476.3496 264568.9894 147572.5311 147572.5311 163937.9051 95979.3983 50071.7364 90830.0662 220181.664 59278.5556 120954.383 63199.2922 75900.6198 72100.916 141501.0424 80339.2732 74295.8993 98125.1745 81073.8577 69742.2805 96390.7914 82077.902 119947683 rgl Carbon Cycling Carbon degradation Pectin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 3799.8264 5031.4431 5692.2365 5766.9984 2240.7237 2012.9219 2012.9219 5803.8606 11218.6852 3620.7137 5811.3718 2352.8435 8942.2777 308058405 narg Nitrogen Denitrification NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 5767.3968 185637.2533 6484.9378 8172.7191 3392.3048 11183.2014 4761.0946 7572.4526 4171.3867 440202.9068 6715.6815 3094.6348 5166.2068 1906.635 2758.1618 2915.5309 9709.0081 239738518 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes sp. ECU0401 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 6871.3995 14896.297 3950.4473 4949.0875 8790.6143 5747.4349 66692.6322 3969.1401 3969.1401 6780.411 4574.2246 9359.3605 4921.6098 2716.5237 7568.7878 3774.5602 17968.6525 10936.9418 7908.14 3652.8566 6023.4743 30887.6496 6641.4954 121535070 ppx Phosphorus Polyphosphate degradation NA Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 44533.91 42539.9204 41167.6262 53527.9703 52970.1629 20070.957 47115.0088 41561.9009 28967.915 53237.2946 68891.1195 34794.3741 1423544.0137 169617.7943 47750.0894 95752.0753 44657.2053 44657.2053 29933.1428 65694.165 42507.1131 59395.6164 92268.5955 272271.9986 27945.3262 26367.3902 71388.9905 24655.2383 94438.3438 53966.5727 73927.6258 20941.3731 36541.9089 51546.137 21278.5131 61658.9473 300643446 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7147.801 70438.7764 5098.8971 4647.6622 11238.3927 4681.0085 14164.7285 3301.3573 6083.5474 6485.9252 3762.8086 75201.1873 5758.2414 8201.943 2920.3548 2920.3548 4246.5569 10197.3873 5950.2623 5474.0645 6758.4137 6415.0872 4978.4136 7495.1695 8223.4909 4867.4315 31606.5687 6838.7119 11601.0638 5516.5333 8686.6269 53436.3008 8420.7229 15964.3725 304558342 amyA Carbon Cycling Carbon degradation Starch Edwardsiella tarda FL6-60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 19159.4293 32053.263 10722.9427 11070.1384 49040.4664 6267.011 27118.3945 13675.1265 14207.9228 159893.1315 18921.6367 11602.7363 75295.5767 9795.9986 9795.9986 4121.5138 25042.3642 8993.5755 4951.8705 14221.7485 21527.286 5076.6113 16188.0133 13702.6354 11885.3018 23796.5292 15728.7335 17075.8533 5897.6305 17590.1249 14076.7706 17118.8299 16164.3336 297547756 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 59171.4711 31335.369 29718.591 79175.4789 43984.9401 61107.6021 68970.0041 67754.0386 34290.205 37921.6065 52262.644 37596.4332 1618800.7346 58971.1013 58024.9988 335779.343 47440.3722 47440.3722 80620.0646 69618.6424 30668.6312 41279.0435 48365.9241 57852.0846 23081.0656 40531.1923 44201.7878 26080.5282 86775.626 26301.7287 53104.8101 24618.5069 38494.1546 55565.8122 24332.4557 98455.8456 374922697 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12548.3391 8261.7363 7756.3575 7207.4892 9546.9386 8312.5261 7476.176 8758.2208 11012.8308 5295.0419 204115.6627 11548.653 10892.9007 7699.8248 4314.0585 4314.0585 10506.4389 20238.7163 15790.344 21781.8746 14080.1902 17195.1402 8073.3171 8296.269 25717.8959 5725.8191 24081.1225 16733.863 22331.8239 6386.5043 9912.7168 9831.4733 8250.8013 17188.7301 118435893 rubisco Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 23736.4149 14071.5432 126314.8591 27179.1323 86666.7279 10761.924 11404.3269 9842.8299 14910.0577 16916.3513 119760.9026 9720.0333 178421.0743 10388.2582 7168.5715 7168.5715 6797.5958 16289.6893 16625.0889 5293.0106 15153.5332 22460.0922 5812.0774 9647.9527 16357.5624 20362.3685 59095.0958 14685.2972 23539.8092 10207.8726 41771.6261 7806.7696 8270.1417 18140.2993 27377280 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 103930.381 67598.4731 28955.9382 167843.8238 1902566.47 19554.7588 82332.9339 30463.7564 35927.5787 38576.8892 77278.1518 1132024.4385 68928.2795 191429.0006 77688.3737 97004.9577 97004.9577 28601.5891 77789.3308 59082.896 138936.3555 1002264.0445 48146.826 65760.9535 43769.8838 53591.2503 53525.921 102148.3538 65130.3229 46659.429 45107.0689 107256.9139 50496.1308 27110.2241 111121.4512 305411728 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 4933.5877 2564.515 6174.6073 2742.0469 6141.3974 4380.6742 12516.1091 3668.762 3668.762 3669.4091 11155.5325 3485.2023 16020.066 2336.3343 2386.3343 6219.2141 2523.7916 5415.0908 8467.5586 3012.3363 2856.6739 2303.35 196226834 arsc Metal Homeostasis Arsenic Detoxification Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 4567.6494 5549.9242 11087.1702 3100.1892 5386.7093 9655.8501 11185.8146 4777.172 141684.5792 7736.2941 7761.9494 9273.6404 5108.4783 5108.4783 4653.3239 16599.2166 8740.0592 4462.2061 60773.11 4973.0585 2494.8585 4622.0823 16052.1842 5056.9609 22021.4114 8604.5701 11326.6463 3390.9751 15102.6097 4486.728 8927.7439 7118.6756 81250756 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrosospira sp. NIJS16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 76808.4938 28870.0196 11884.2092 14534.712 8359.5429 33339.3059 11676.5899 17255.7132 12087.9598 37154.4326 18313.75 546861.2062 18012.1047 18053.628 17278.7594 27328.6915 27328.6915 10410.0811 26297.0971 16140.7871 14547.9851 36003.8591 36893.4875 9443.4015 13134.489 139967.9397 17810.1806 38521.4678 19281.6928 32410.6295 13118.7335 18950.9135 20110.2984 20636.1961 25525.501 163840455 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 38257.1829 152235.9798 58037.1148 21837.3401 9508.0903 14489.0254 6251.0961 36761.1954 27643.4159 15676.2593 254071.2829 30413.4996 21605.764 79558.6801 37882.3834 37882.3834 21355.431 38458.6439 24567.2224 35263.6166 27489.5879 35953.2017 19042.3099 22101.3901 33160.8032 18473.7563 206108.3199 28176.5224 31913.3153 12033.8562 27771.1969 27045.5936 41382.5136 21154.1759 239805178 tfth Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 333240.342 6077.9892 17837.4642 21476.0235 4852.7121 40380.1338 7774.5224 6010.3754 6412.8667 52174.7022 10144.855 183935.6437 11458.3142 9528.406 27514.7403 53254.167 53254.167 9204.4595 31524.9448 9503.8728 9943.5452 22540.8709 11172.8066 4233.9824 18668.3895 14933.959 9799.8354 36089.6423 16828.6531 47093.0199 28413.8156 14132.4666 13247.8757 8161.5665 12245.049 259660915 TIM Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 26670.8857 15957.5278 28638.0953 19759.2754 51043.3842 14799.8252 5165.0466 11155.033 26585.6973 13542.5347 16371.0953 20403.0702 291178.6089 13425.5333 22349.6299 24236.1103 16224.9823 16224.9823 6056.5581 23261.9996 15997.718 14971.5628 24806.831 8809.0623 6118.3258 17234.1034 27824.0781 8077.5383 44893.0671 32718.4318 29962.3617 11516.7895 14054.2572 12031.306 8411.2962 8378.3159 407279404 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5002.7739 32321.7832 3409.6864 2064.6203 76957.9082 7003.9381 8126.7864 5071.8377 5071.8377 23177.6157 3188.8375 3320.9882 4336.489 2158.7691 4353.0873 34335351 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 66465.4937 567833.7612 20005.4932 7988.3336 6718.3726 79522.0279 67723.4627 11940.9471 19795.2884 17068.1336 34892.9287 189206015 Sir Sulfur sulfite reduction NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6052.98285 62136.7618 18472.8448 41255.745 25382.8621 6572.4637 3027.53505 7979.7835 6961.0877 14088.7509 3495.28735 187846.399 8807.83125 8876.12685 8241.6942 7740.53425 7740.53425 6016.32795 16532.44355 7960.4561 6598.70295 90814.5987 10686.98245 4858.5175 4917.91145 18079.9153 4611.1639 32057.21235 14996.0661 16183.74745 8597.2127 7123.34245 7489.05235 5735.42545 8530.3128 151302191 APS_AprB Sulfur adenylylsulfate reductase NA Desulfonatronovibrio hydrogenovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 6291.5268 179751.0543 7969.6773 5313.6684 5048.2516 2924.158 3155.4207 17579.0873 18037.1564 149509.5723 4738.3296 21699.6196 11453.8706 18078.7087 18078.7087 2663.5982 15934.4759 5084.0848 7927.8872 10366.7698 31439.824 9934.7065 9790.7407 8128.1394 17594.778 6539.5817 9223.7344 9024.6459 16815.2787 5408.9885 4320.7907 9935.1251 299750604 axe Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 37943.2714 8613.6885 7405.9117 8402.6238 12064.1967 24843.5707 7919.9873 20998.8416 5857.9375 11282.8463 2307565.7866 19265.1203 204367.8348 8590.5702 24243.1378 24243.1378 219091.1523 24880.8227 6923.7546 16079.834 15728.9079 9094.1418 15146.2496 9173.1481 13497.1164 9690.1997 41733.2535 10626.7399 13702.8656 35578.8497 17341.1469 10891.1008 8733.5991 9789.9543 108763074 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 181147.0805 58626.0705 126094.0016 68152.5859 34208.9443 58396.4792 254830.1451 82007.8809 76226.2318 75964.8679 214176.419 104969.1159 2964994.9088 167685.0925 187720.3706 187730.0216 125412.7467 125412.7467 83540.8321 136332.3666 441709.9142 93159.4136 223210.7777 94357.8573 129218.2237 113776.2191 129408.098 91926.1148 273873.1851 759113.4888 133024.6946 122125.4202 112867.5196 113767.4196 148313.4429 129362.9258 67538568 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6776.163 2392.486 3951.1984 120846.95745 7571.1317 4915.0972 5511.1102 5404.7579 6645.0217 11531.658 5160.2589 4051.5079 86566407 urec Nitrogen Ammonification NA Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 102902.1665 17821.1298 67252.5432 91636.4872 643255.1878 38010.2369 45422.855 52124.2174 59058.5112 95420.5243 124052.5971 68301.38 1418252.9949 89866.7486 53675.8444 103836.4165 131842.6894 131842.6894 49525.418 84975.6843 44086.2388 393044.2364 83254.8172 118604.0479 34624.4301 59022.244 73090.9322 53385.7507 122810.4501 74497.7562 78467.969 29245.0026 65106.2333 54520.0957 36750.7912 107244.1919 92442487 terc Metal Homeostasis Tellurium Detoxification Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 49905.7019 9897.5865 16988.4393 6072.944 13127.0554 5664.2273 11368.6942 9742.7197 6335.1042 231752.7591 9807.6167 14182.4638 20539.3572 15409.0889 15409.0889 8726.9227 14906.6074 28123.6378 13559.9832 11728.134 12710.8703 83524.3166 8367.8038 27136.1988 34220.7146 392986.0497 19836.1804 21444.4749 71384.6638 121616.5578 14668.015 7926.7577 356740.0987 372488222 pgk Carbon Cycling Carbon fixation Calvin cycle Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 109092.9647 189063.2757 94517.4365 58633.2313 12091.8636 56080.3345 42238.5199 83662.6187 45143.2941 50217.733 78169.3189 774342.7678 118042.0666 65265.9006 93129.7603 68755.2509 68755.2509 30847.7444 70846.9747 42210.9866 31503.884 115915.0518 35495.0347 36143.445 65658.6524 47467.3026 214926.1411 261814.9927 59515.4262 130441.1152 40771.4087 81548.9596 184826.1575 39750.2952 91677.1159 37726844 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5615.1946 10246.2272 100665.3491 5760.0753 3681.8862 6207.3879 81652.5132 5104.26 3263.9418 2753.4449 2753.4449 2665.8296 5853.9641 9859.5719 5773.3787 3583.6558 4318.252 7336.1377 8091.6056 42868.2045 1945.0296 2574.9276 3832.7685 34017052 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5837.8797 5673.0788 16729.5075 5133.3579 4632.7281 11355.4017 5798.0744 6411.9404 2909.3042 7488.7891 7437.1924 13591.4225 2955.21 2955.21 5415.2951 15626.1045 4062.5901 5805.6642 4493.7355 3832.6693 5372.0308 8744.536 5194.4016 11488.1882 11025.154 9114.597 4971.3251 4613.7695 4916.9165 8285.3849 335436377 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 27714.6774 64389.762 35697.8374 12793.2108 18612.34 5145.1467 17814.7348 19938.248 15591.9571 24275.5674 47286.741 34081.5393 539863.2707 46888.2626 18101.7788 14241.6272 20193.8042 20193.8042 9804.1401 37486.5688 14346.9922 37974.7618 45519.231 16753.8969 12806.1578 14771.7687 19496.4867 11632.1043 46938.8747 12442.9693 57549.8193 9726.116 14990.7724 22520.897 10027.9015 22151.0084 397732874 vgb Virulence Antibiotic resistance Degradation Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3937.6553 2719.2471 4132.6338 256355843 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 47042.3307 23842.8721 159934.0647 62908.231 176567.0613 68089.5131 54782.3948 72870.3065 53468.3866 597544.6378 70412.9965 85638.6611 1184075.5343 78425.2628 78558.0075 87065.4492 132070.6437 132070.6437 199742.8171 64039.1873 50170.9628 42891.5979 94548.2551 107338.813 24336.4967 44887.4528 108737.7356 40533.0015 142176.8695 59246.7908 465320.8085 31846.2444 106747.5009 86793.4864 41432.456 96915.6913 119391647 narg Nitrogen Denitrification NA Rhizobiales bacterium D5-11.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales; 48492.1713 4373.1864 29635.2377 19059.3807 15068.0409 20309.7391 13641.3372 98731.4696 16620.0135 21252.2797 15131.4276 8270.5862 8270.5862 23609.6708 36192.1335 17952.9624 24169.635 29165.7371 12024.5547 12047.9648 8924.2209 13046.2054 11425.3153 39234.6214 18375.0931 24243.3745 19186.6514 11296.7543 15220.2307 12294.0998 32579.6774 154240614 mcra Carbon Cycling Methane Methanogenesis uncultured Methanobacteriales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales; 7267.3641 3414.8249 3134.2632 8973.5633 64228.4715 94133.4617 4355.892 6903.7949 4795.6649 18525.2588 18525.2588 8329.0509 5618.5413 11380.9242 11840.7063 13298.5249 10292.7443 8972.8823 9913.4999 737454.2973 7726.5494 12334.7647 2054.0223 6234.0043 4953.718 48811.1535 325261134 dsra Sulfur sulfite reduction NA Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 23135.5131 15952.6362 15668.707 34511.8504 27810.235 88942.526 24083.5487 18226.6165 16350.9065 28724.0535 23357.781 17757.2776 687476.5291 38402.8522 32598.6394 28809.3177 15926.1248 15926.1248 15391.8858 33449.5318 29103.5525 24508.6019 24822.9809 26934.9798 11361.5579 14950.0674 36937.0159 9904.6634 53435.2355 16388.795 34163.3463 14865.6587 16485.7995 18059.1005 13595.0641 33812.9153 340527097 mannanase Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 3768.9065 11297.2188 2392.1074 5337.9079 5337.9079 8700.6451 8220.1998 12177.2219 3959.6338 36359.251 357174165 cda Carbon Cycling Carbon degradation Starch Clostridium sp. DL-VIII superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 22697.2059 5505.7382 5633.6471 5646.1799 9723.9739 3388.4473 7206.2339 7765.8381 4802.4247 159960.2212 22853.7225 6743.7034 6874.965 4999.9725 4999.9725 8342.0652 10475.5158 10654.2407 13349.1348 11687.1431 9766.1003 4777.6547 4793.8563 11844.6751 4536.6663 17116.564 12680.0378 12042.283 5398.4015 5188.573 7138.7921 12795.8508 19500.7499 218765967 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Desulfurococcus kamchatkensis 1221n superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus kamchatkensis; 34359.4764 26235.1822 27956.709 16589.3465 7298.3428 27918.8639 27416.0276 21592.6959 28497.5314 40878.1816 14615.7796 597657.2627 34642.4073 53715.5661 34805.2881 20709.2916 20709.2916 21547.2392 35242.8936 29977.9372 37056.9632 34921.7154 43496.2364 16042.9156 17526.5946 47332.3127 45719.279 59489.2776 38037.0017 38742.038 19717.1019 21179.6009 23189.0629 20495.2317 53162.2073 28556705 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 180447.0321 171028.252 222704.8188 133401.8176 117009.2375 40414.3356 102820.1937 137508.0792 97030.1184 108378.2108 139276.7528 128455.8084 2173588.2238 130279.4669 169149.7069 179773.7748 139656.8062 139656.8062 75853.2881 153641.8345 87815.1712 154136.8112 135270.0573 175258.6056 75681.1457 88691.183 339309.9628 79293.0627 279016.6006 77324.7324 130679.3074 66042.1133 95753.7093 109493.4069 75745.853 145122.8931 118469348 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 34144.9925 1747.1225 3845.3079 3679.0562 65758.936 4436.2192 4578.7259 3154.2031 3154.2031 10510.1241 3544.5648 4290.2378 5069.2423 2534.0007 2506.427 9022.8502 4144.3445 11834.1324 2015.5449 4714.8471 4353.5876 2262.9483 4712.008 77381501 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5561.5607 6447.464 20748.0704 1982.934 2256.0243 3123.9503 24682.6734 7304.0865 124849.4878 4446.8679 4807.7274 3943.2137 3943.2137 4038.2051 8019.3834 8189.5731 4804.4486 5180.1805 4112.3635 2914.1468 3360.9557 8331.0948 2624.5353 843722.9621 5201.8419 12100.4308 3649.5648 5203.014 4780.9763 2564.5833 9320.2612 222543228 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 5607.5854 6785.2611 4308.2758 19235.5634 4489.714 3028.7421 2285.7871 5407.4121 9085.8193 3342.1511 151283.8293 4437.2252 4771.9561 5566.853 2513.1421 2513.1421 4607.0668 8202.3378 6142.0082 5192.5627 11068.5902 12784.1076 21937.4643 2793.0055 9361.2347 9351.7806 10192.3145 8175.2004 6966.0897 4455.1822 4842.2884 5102.4524 3739.0475 7628.0856 255708188 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4454.3627 6700.4985 10102.2176 7948.0594 4830.1662 13997.3138 5529.3783 4852.5118 3864.2996 110101.3569 6511.6543 13081.7312 3827.4134 5427.1644 5427.1644 5164.5872 13228.2392 7414.3204 5986.5972 16663.9763 7553.7533 3393.1389 4644.6232 10356.7251 4950.3337 15498.8614 7657.5205 11901.8476 4412.8584 5606.713 7355.1528 3209.1101 6892.5409 29466066 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 59531.9274 48675.6369 29906.0521 47954.9895 33137.8206 19532.7038 39928.41 23210.9062 20974.8964 41179.0478 38997.0847 25027.6259 658394.7836 45671.0401 53964.9713 33604.3624 21040.2664 21040.2664 26926.2615 59378.9502 56725.843 45877.2399 51350.7736 58172.4301 35103.4964 19808.6717 42501.7556 31312.7262 79644.5952 23181.7167 43957.2409 19914.0678 27284.4331 43073.3461 29081.9184 91110.1631 398336535 b_lactamase Virulence Antibiotic resistance Degradation Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kmetyi; 17919.5458 10023.7389 8104.9687 21383.1717 7469.5694 16053.3962 10914.7155 16744.9834 14576.9261 22753.0047 12206.2446 288565.6015 22813.8269 42141.9615 13940.4504 11340.2299 11340.2299 10267.5983 25693.8029 13621.0907 28482.0689 30868.0172 20040.5893 14746.7382 10756.0129 22651.2044 26246.7766 37897.701 8573.9983 21539.39 10326.3126 15079.9891 18475.468 13599.5084 18091.3477 70672975 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4318.3857 4335.6635 2347.394 12149.0046 2755.2444 2092.3048 3183.7163 3734.7283 361063672 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 8463.7855 12632.543 7790.1579 4245.2734 4482.5841 3782.7331 8317.1047 17881.793 9960.9266 4953.7945 79673.9294 6120.8572 25871.4636 11843.2138 7257.797 7257.797 5056.6023 24579.882 4630.6547 5052.3734 13922.4567 23977.503 7614.4174 8627.6412 5757.9654 95131.7061 5318.4624 5958.9697 40201.9622 6109.0987 19772.8634 4471.8091 8273.7166 115368245 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 11338.9819 7818.2508 7093.5604 12489.6713 5951.8177 5023.4682 6982.2552 7287.9552 12509.0909 7821.4966 127641.5394 9261.4226 20751.2874 408516.4781 6750.8789 6750.8789 9276.5775 19037.8878 7238.3881 10464.403 25425.2947 322318.56 4960.7385 9232.186 13916.6346 3408.4015 33876.8885 10646.9251 8887.3819 6414.0636 10227.9708 7081.8942 81953.841 28126.3867 94471309 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5585.3923 5294.2317 2851.3575 21454.6695 10599.0161 5010.5935 143983.7065 6142.3472 8935.709 6339.1236 9040.7523 10186.0249 8859.1316 9575.6819 7047.5525 7263.8299 4500.1881 4099.4696 6341.5603 3379.7645 12550.4877 5804.6624 10640.229 3618.4758 3943.6697 8435.5038 5102.0514 5977.1003 83952566 soxY Sulfur Sulfur Oxidation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 6738.1356 3600.0635 2189.2503 3670.9136 3449.1573 79966.8478 7455.0184 4409.5807 4020.8039 6768.7982 4178.0685 5372.8037 4605.0596 5808.0503 2013.5492 5122.8004 6395.9299 2252.596 8028.948 4442.9152 7411.1829 2389.5617 2751.5117 4861.8775 2868.0176 5414.9256 78193355 ppx Phosphorus Polyphosphate degradation NA Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 11543.6487 8384.952 9552.0237 30623.5032 43535.3 2717.207 7686.2096 9661.5572 6700.3755 163588.9028 5932.6044 10140.7504 15932.4435 3197.8784 3197.8784 5125.667 13112.0945 18353.8523 7375.1718 8356.295 12819.8889 7278.5603 4991.8856 10510.9256 7379.2957 11707.2286 5811.478 11153.8696 5080.1353 9483.8146 14808.9912 5485.8384 10108.0472 270280838 terc Metal Homeostasis Tellurium Detoxification Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 8535.0615 8698.6402 4745.7983 2291.8971 3443.5119 6989.1926 5239.1783 5769.9948 8361.6839 6319.2775 7306.0155 3381.226 3381.226 6555.6386 10448.9748 7518.0207 5019.605 5750.1874 10636.284 6049.0449 4292.3002 6067.2396 10985.0952 41037.8778 14745.3095 18857.0924 2588.9487 8554.8061 9276.286 6082.4513 19810.7726 49610275 rgl Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 5041.0238 6609.9897 6446.8173 8844.0443 4264.0409 4481.0705 74978.9781 8425.4186 2458.5474 2458.5474 8449.0437 5971.833 9026.0025 7798.2787 6180.1716 3913.8834 3166.4823 7971.7359 2849.5003 10488.9604 7222.1336 7848.2151 3081.4417 3849.8708 4763.3162 4002.2859 261821990 nrfa Nitrogen Dissimilatory N reduction NA Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 6774.8855 4435.7854 3693.6145 3700.1542 2751.7934 3028.1291 5269.4295 88676.7032 6514.5697 3484.5522 3400.1364 9906.4331 5627.2423 5791.2095 7193.6732 8291.614 2316.6619 3090.071 5361.8055 3223.6951 9279.573 8110.5441 7336.5025 3081.375 3534.9602 5356.833 2617.3813 8035.7624 156528753 chitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 18401.3349 24529.4465 17032.7446 30953.9398 17082.8578 25618.8015 19996.9529 15633.5099 15430.7915 18692.3637 544481.16 27208.5811 126166.3484 19359.1469 17896.7454 17896.7454 37081.0464 30643.7059 16160.0113 17286.8558 13179.4184 17812.5727 37836.5305 12850.5757 18422.4933 10615.3789 46643.446 21684.1726 21898.8426 8214.5257 14981.7651 16068.8914 30802.0461 17512.0587 134095777 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 4845.8296 9641.1023 8160.5542 4224.9383 4135.1797 4237.9699 4502.3545 2948.5573 89395.2285 4715.632 4456.2299 2247.4786 2247.4786 3908.8488 6953.4355 6276.2693 6393.9689 4817.6571 2406.4533 7307.6147 9480.1085 5022.7349 5173.0607 4056.7127 4204.5398 3612.0628 2885.2642 6845.1955 196229793 amyA Carbon Cycling Carbon degradation Starch Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 150870.3665 21725.2537 315481.7824 219547.5342 158106.2059 210126.685 326740.9182 260180.0041 85846.4628 104860.3685 97183.4064 120327.2758 7345738.3222 311982.6855 325936.8706 928385.1572 152757.8875 152757.8875 107589.4009 121120.001 98905.7752 446346.082 117387.2343 131860.9906 52266.2386 85433.1994 145490.6821 89836.08 392749.4636 175289.6036 258443.9944 194653.5137 111858.0345 118354.8114 60244.1274 370465.7641 16125952 ppx Phosphorus Polyphosphate degradation NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 6216.3837 3994.7665 8051.3697 4819.483 5686.8664 4613.0952 3671.0775 27397.922 3669.6919 99007.3668 5358.3387 7437.3859 2386.7097 25100.4281 3796.7041 2771.2888 323273830 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 77033.5547 14119.14855 11042.2359 24658.0056 9150.3768 26920.94195 10266.2609 19054.9612 6738.99415 20627.98865 12225.1932 150855.21675 8936.98905 12499.65765 8734.4721 10654.50145 14992.35805 14225.4718 15189.09105 14150.8827 12636.30955 10993.38285 14836.9339 9792.1784 26037.97085 12807.11625 24394.9437 13552.5871 10332.39465 14018.82965 15064.7639 12225.84765 165880037 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8646.5064 11107.8335 138705.5971 46841.1439 5137.5655 48384.5577 8313.3491 4531.6661 7460.3714 9197.8578 6274.3712 307104.0715 10157.163 10852.7756 9288.559 6388.8364 6388.8364 6225.9848 11341.8504 11989.4997 6194.1584 11093.1482 6016.3337 4187.3442 6060.1699 15809.3154 84248.0306 21107.3149 10082.7519 15157.5947 11746.9346 8891.6869 10317.5526 4256.2577 8919.0174 344342078 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 134517.5428 23053.7937 51036.4338 81283.8833 19155.112 28114.4693 64578.754 48503.9224 34346.4666 61273.9623 95876.4872 1951060.8102 230309.9944 95635.884 81508.0261 61073.3538 61073.3538 57733.0832 91633.6684 55215.3543 64533.3662 152925.8282 119067.3779 38477.4381 63614.2785 83734.919 44945.1277 140563.2853 53126.8692 211674.456 28938.1146 36754.6349 67600.6136 25558.3234 228140.2944 332013820 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 57228.7306 17666.9092 6996.2172 37598.8745 7421.1394 17145.3471 24421.1151 11272.5557 20670.8413 19101.7986 9454.2599 279435.372 17656.373 18526.2958 13682.7079 13378.2679 13378.2679 10563.9018 22899.7442 17625.9523 111304.6682 27810.9124 16153.3153 8680.5505 13623.689 22791.8988 14955.753 53064.6806 27334.3193 36069.9655 20722.2146 10171.6386 29563.438 8719.9914 17668.9315 221322067 rgl Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. subtilis str. SMY superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 5075.362 3542.8066 7271.2623 407257786 alkb Organic Remediation Other Hydrocarbons NA Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 16392.6204 8481.4062 15423.0017 14479.5542 2884.0276 10159.1689 210074669 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 24129.9163 11790.796 20422.07 12471.9983 5191.7498 12938.987 10321.0613 7559.8901 17333.6858 17145.6173 21048.3014 728715.2695 24730.9445 19890.2825 18818.3663 10279.8077 10279.8077 16243.2679 40303.5226 21066.8436 27260.1819 28317.2984 40284.0501 12353.2127 11286.4399 23024.6315 12782.9302 41120.7051 13610.1322 118241.3086 12144.3751 17801.695 17031.8249 37266.375 36301.8951 170777868 tktA Carbon Cycling Carbon fixation Calvin cycle Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 57441.5976 15360.8995 64537.1424 11395.1759 86464.8776 14029.0305 18912.6448 54983.53 56951.269 42196.6462 41322.9832 30821.4018 662990.3497 19066.4781 59770.4683 38073.1065 90282.3973 90282.3973 18925.0479 56117.041 31787.5939 43441.4464 85108.1338 18254.608 32828.9303 33121.1851 54610.0035 37188.2356 227189.443 36288.4801 91053.2321 31298.2606 43698.12 52549.9918 62626.1733 19522.7709 310796063 lactase_fungi Carbon Cycling Carbon degradation Lactose Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 11726.3449 7538.3695 13416.766 8663.9701 10767.6166 9399.2131 5263.2045 8691.8986 5901.8731 136363.7825 24828.282 6102.3069 23523.3977 64321.6064 64321.6064 67109.357 37228.4531 10998.1667 9109.7432 745981.5805 10136.049 7288.36 18757.6986 8615.341 9292.0301 25565.7286 15518.2989 12558.8124 15237.36 12222.6358 173050.9745 7769.315 5536.7448 343788066 pmoa Carbon Cycling Methane Methane oxidation NC10 bacterium enrichment culture clone 'enr c 332d Lieshout clone 18' superkingdom:Bacteria; 78137.1098 16030.5113 13967.5317 6317.1002 19484.6351 7480.2947 7708.337 6428.6159 5035.4313 139306.2667 10878.3628 9537.1824 42682.59 42682.59 3345.4085 18367.0259 6807.278 16788.2396 17046.6982 44438.2978 4563.3948 9580.881 9538.1755 7614.0508 12966.4902 10012.0243 12099.3656 4878.4479 38117.8921 12048.8773 6907.2851 27213.0507 319743630 tktA Carbon Cycling Carbon fixation Calvin cycle Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 29096.6235 5144.8839 6689.5538 9501.4677 5632.651 5860.3975 576411.6671 5977.4242 4033.5914 8526.3891 6065.3459 6065.3459 3366.6118 12296.1416 4310.3664 6114.9524 9590.1811 3888.5103 5098.6429 8147.9072 3738.0553 13844.4068 19366.9992 25083.6933 2817.0835 7440.4003 10105.3199 5744.8165 390948332 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 9622.0788 7712.4148 17657.0699 5883.4994 8043.4998 4932.0844 4961.5632 2930.1879 78832.445 6387.1916 4775.5214 2217.7629 2217.7629 4420.8564 13144.1938 8028.0717 5411.4254 7580.1702 15416.1534 2749.9141 3247.0217 10295.7871 3209.2362 14363.6513 5488.2013 29792.6304 3233.0798 5387.8688 3815.232 3763.9349 11778.1403 163761222 hbh Organic Remediation Aromatics BTEX and related aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5672.6407 8150.1057 19264.0406 5442.6328 16476.6886 19827.6177 5252.7289 5662.2483 11632.8779 7026.0643 8631.649 2089.9616 3827.1203 4744.6738 21708.5778 345882905 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 5059.0105 6945.2358 7441.2136 3570.2871 3556.1996 6539.3323 6079.0388 68958.3548 4333.8409 5899.8185 8514.7829 4706.8202 16878.0732 7911.7429 6273.5021 2843.7108 11858.7546 6937.8642 5206.2491 3274.0013 3946.2477 3723.3483 11057.0767 38637875 napa Nitrogen Dissimilatory N reduction NA Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 13433.7668 15058.1865 21632.6464 9713.9677 42430.8785 6953.7967 9491.7431 14554.815 209917.6852 22878.084 14396.573 8446.2521 8388.806 8388.806 5760.0073 22802.4037 9065.1835 8679.061 14578.7822 7654.1573 6209.229 13128.9904 11871.1579 8715.2887 107463.2519 8957.6002 62294.3997 5091.7451 13132.5759 14411.4354 8784.0017 13849.5844 365333129 xyll Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 28759.3064 216319.8001 53800.3004 6870.1032 10199.9094 6404.6485 4585.818 4493.6674 4561.6666 2961.8567 60235.3983 5050.9599 3349.3352 3914.4342 2732.7708 2732.7708 10909.6287 3375.1002 3537.1247 6283.1953 3843.5198 2870.1712 5806.2089 3108.8054 7075.4449 3721.6188 5120.1294 2331.2411 4081.2926 3711.4826 2283.556 56696787 dmdA Sulfur DMSP degradation NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 198781.3927 43499.9175 24264.4959 97522.3653 47568.271 24437.1525 31486.6068 72805.6228 21591.9128 105310.7933 54402.9303 59052.835 535599.5138 37379.4978 50555.891 111276.6214 43628.9826 43628.9826 36424.3952 49826.4223 63518.6695 55430.9469 73383.4878 84843.0817 24260.8744 42302.2348 39201.0778 46718.9974 76649.5749 207409.5513 58126.1911 59274.6887 58369.8458 218437.5523 66779.0758 66947.1437 392090291 amyA Carbon Cycling Carbon degradation Starch Mycobacterium abscessus 5S-0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 20841.9913 10756.3993 11479.5378 6074.084 3179.5365 9262.6194 11842.8429 4595.3565 216374.9652 12147.6878 11409.1207 6841.5917 4334.6768 4334.6768 6555.3405 18654.6868 10313.7963 7866.7569 14560.2256 12621.7677 4407.873 6339.3482 15018.0069 6058.7197 23239.2322 11246.0386 12913.1808 5856.9549 8696.6563 7811.9488 6557.1805 15834.689 162568509 aoxb Metal Homeostasis Arsenic Detoxification Pseudomonas sp. 1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16048.2953 14074.0317 27012.2096 12580.8946 153825.5578 16965.1649 22288.7755 9305.555 300432.5677 37833.3578 25253.1189 12445.1996 8219.6746 8219.6746 8872.036 13395.7848 10753.4619 54598.9219 19638.2944 5887.1731 8959.3589 12917.0853 11612.3993 24633.5473 42830.3447 27315.6898 11326.678 30879.2506 10979.8951 14696.9974 4815.146 7801.7658 145222277 urec Nitrogen Ammonification NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 18216.5627 13372.3131 9596.274 55735.277 4344.5855 9543.9523 6895.1634 11998.9682 15201.9345 42456.8143 244658.0953 18595.1005 14885.1879 9518.7931 15874.4473 15874.4473 7310.8798 24422.9941 14180.5719 51101.9324 21920.4585 13397.6269 6000.9087 7309.1023 12715.1846 8368.9249 24394.9325 15047.9328 16813.1704 9070.5375 26013.6573 10135.0248 14592.5332 57390.9053 5702381 terc Metal Homeostasis Tellurium Detoxification Proteus mirabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 8475.128 6659.6008 4383.9583 4753.6776 3829.5836 2346.0791 3608.5869 4223.7728 86267.7484 5879.0685 4472.14 2298.7603 2298.7603 3975.2643 9997.3845 6627.9113 7725.6643 9681.6521 10205.7141 2798.8363 3347.1904 6558.221 4487.5827 10654.97 5441.9199 8728.7764 2737.722 3915.6681 4533.9409 3784.146 8602.8645 76577452 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7226.5945 11628.0158 6043.0138 4173.6419 4243.5322 2739.6863 9925.6902 2959.8528 120835.4109 4087.7448 5661.3854 13325.847 4048.8732 8770.7017 8477.0597 5919.895 10354.6351 11600.1769 4675.1184 10101.1635 4087.5058 18328.2428 9174.3511 13829.7237 5273.8039 4631.9634 4902.8845 2699.6256 6005.9317 296022690 rgl Carbon Cycling Carbon degradation Pectin Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 24553.6293 114780.389 29739.5514 614928.5086 50187.8148 7664.4405 36191.9366 19729.0829 17489.2018 26859.5277 16987.4437 571801.0603 31804.8048 34885.5014 54926.7818 55741.7066 55741.7066 17156.6616 19281.8568 17761.2838 31422.3895 99696.8402 14378.7415 6777.3023 25576.8841 54320.7624 14223.8546 49564.8533 34085.8847 47635.4591 12844.9941 22027.1919 26771.5597 7731.8457 25956.5094 121609742 toma Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 25144.0815 24774.5932 7112.786 15175.2424 3829.0716 28495.4248 8305.2306 15650.8223 10643.9413 16544.1412 384281.0263 8810.7554 8681.4335 15219.9468 13736.6866 13736.6866 9530.5215 21142.6901 4254.8369 28204.6225 57899.2433 170245.6559 23605.7151 19351.2479 39920.2459 25629.881 28449.045 11678.067 17382.8673 8635.4815 15581.8486 14434.492 15876.6745 18445.6074 71733895 trzn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 74468.93155 1293749.5573 36780.6101 23856.2344 23326.05875 36461.0887 43872.5031 32835.85115 24197.63035 41769.1178 78296.5119 85999.3791 42541221 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 31914.7949 24045.9207 5034.827 2681.1741 19614.1107 9043.1144 20294.0613 95513.7228 3772.4329 737396.0126 4601.0876 5060.1452 5060.1452 3162.6046 3960.9815 6425.1302 7678.0784 4181.823 7780.4319 6406.625 6844.9655 2342.211 2652.0443 3262.8533 269305886 amyA Carbon Cycling Carbon degradation Starch Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 12884.0756 9125.8985 7517.5982 16838.7965 11192.1828 15033.6358 7998.896 22284.2079 4755.0644 204130.2139 13015.4434 9284.2734 15774.853 18806.2975 18806.2975 10406.8987 13406.4526 11061.6822 9158.4919 52101.8705 12361.5622 6297.4318 6837.197 17635.055 20568.065 14696.3711 18255.7273 13415.0154 5851.6481 9376.93 10911.8176 7482.9639 11258.703 2182531 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 17340.2168 23161.1207 24170.1859 78811.2062 10605.5467 9065.2759 13389.7873 12012.3618 14751.2707 18030.1911 17032.4777 468081.7371 25720.3616 42078.6949 30718.0509 22457.2286 22457.2286 10273.4749 30900.1512 25693.1432 21618.1178 34074.7496 14467.6519 12427.6791 19415.2051 22019.6725 11023.9386 47235.1835 24713.6807 36291.6827 9826.7658 20065.0311 24681.6474 6906.885 14339.1141 359836554 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 455963.6356 15286.7856 107088.2382 62438.0699 8010.4828 13327.3021 490565.565 9058.9826 14561.4711 17039.1442 38426.0958 364710.2731 72263.4324 42935.2323 39402.735 42818.3879 42818.3879 447704.8121 101011.0317 14452.5149 133565.0339 20655.7071 28202.2538 47367.6214 127482.5735 23854.9513 14737.9936 132349.3521 32037.6548 23515.447 10083.1141 112882.7488 16992.631 361687.4221 17938.3795 330827820 amyA Carbon Cycling Carbon degradation Starch Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 12032.0757 15093.3069 5127.5344 8980.5103 7670.026 14256.7161 25349.5393 15376.2475 7864.9521 14035.7172 1943096.3478 15834.9947 14392.1117 91000.5752 13310.1372 13310.1372 7585.4298 58936.3565 11285.7765 11276.7195 18003.0832 6763.7825 7187.2127 22634.8695 68336.2665 12375.2475 24127.8599 12566.4097 27501.6599 17623.811 11355.7765 24482.9853 5741.0033 203029.8899 302408527 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 5950.7311 10137.28465 9710.3323 2420.49835 3351.046 5988.6859 12003.7293 221496.33205 5510.2076 4676.61625 20006.1595 6398.00075 6398.00075 8084.02785 6465.31925 5797.2814 8179.8385 5768.29465 4825.55255 4645.6536 6955.5727 2944.99715 11775.9737 7902.368 11211.7684 2414.7238 4131.6041 4714.185 3139.42785 11941.7956 332335128 RgaE Carbon Cycling Carbon degradation Pectin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 14657.8956 34726.2597 4301.7423 34832.4057 4394.2081 9426.3653 19264.785 8748.2095 332449.5707 8929.3462 25193.0431 6194.0363 4813.9504 4813.9504 7019.0484 19939.1059 9506.7522 11379.9657 18168.6759 22493.9658 20290.3324 5728.5723 18429.0236 53975.3408 15292.9744 23145.6839 10848.5034 6291.2225 8820.4473 9283.9047 14708.974 15948.8158 161381297 cpne Organic Remediation Other Hydrocarbons NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 4441.4728 10285.2113 5118.9226 3691.1909 20247.9606 5092.314 64134.4022 5244.0371 7356.4652 3897.4092 3897.4092 8430.7853 5435.5161 5948.6785 6314.7417 3840.1438 6029.525 11210.4458 10665.6774 6824.181 4187.9645 4743.2232 56479025 nosz Nitrogen Denitrification NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 4735.6607 2372.9047 4896.3449 6123.3109 4934.9039 80800.7334 5661.998 5331.8707 3323.9477 3323.9477 2524.2337 8459.9455 6465.4429 6989.1765 8097.4844 6032.9253 5091.3067 6553.0362 11079.3853 5123.1336 6223.1908 2141.792 4270.5895 5005.355 2155.4705 6462.954 148254220 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 23146.3902 882503.4004 271763.1063 6944.3547 19561.8928 11047.2096 16193.3588 11968.3068 29564.0315 40137.0094 162135.2296 212198.3664 31719.5544 17402.8084 33933.3919 14937.0737 14937.0737 11788.2034 29790.3003 25043.9473 12676.7423 110907.2463 29291.1903 15446.5909 22341.1555 32850.9617 17727.9709 395062.681 42776.5393 28779.6208 6698.2436 29927.5555 58873.5629 12836.9695 97979.1337 14719373 chnc Organic Remediation Other Hydrocarbons NA Brevibacterium sp. HCU superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 6938.4264 7511.9021 3019.2726 225611.4733 8166.7796 5839.2752 60852.1256 7917.8435 5683.9975 3603.9989 3603.9989 10925.925 7259.7138 5391.8716 6763.7142 2839.0842 10260.0505 3965.0338 15372.0162 7519.3264 7078.3162 5145.1929 4816.2608 4989.6045 2821.7029 8786.2098 346992608 dmdA Sulfur DMSP degradation NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7657.432 10070.3957 7714.4147 7800.164 5760.5077 7068.1985 4969.5554 8200.1086 9361.5589 3283.6148 165952.963 12119.4239 10381.3311 6207.2185 3473.5682 3473.5682 5755.2939 11003.4092 10621.7308 9802.0814 14955.5654 10539.8716 5011.6976 4685.7292 11982.4437 4987.1829 17451.8387 5844.8764 13023.7114 4738.5166 6712.5577 6279.4823 5406.9718 14440.3683 261856654 soxY Sulfur Sulfur Oxidation NA Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 12393.8456 10942.5728 24069.0199 29630.2297 6940.3224 20012.6504 4886.6586 2681.0927 11025.8888 9172.8303 6427.0301 160160.8202 12452.7956 5341.6829 42188.5071 7302.9708 7302.9708 2936.8724 20073.5734 29441.8549 5252.921 6059.1594 3849.3636 9214.5843 26521.6496 8693.929 19967.9182 17431.0965 18156.7511 7276.4629 10992.5685 6651.0093 7272.7778 5436.781 359736194 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 7224.3013 1522917.8212 9438.9535 101512.4601 3281.1519 2695.4487 6270.9609 11964.6481 5938.8399 10279.3605 17842.3971 27416.3033 27416.3033 104097.7189 25620.7912 7204.1398 20054.711 9953.2174 7355.384 6267.0506 5722.3313 38366.9977 10233.6597 9077.3789 5594.354 6577.387 6038.4947 5525.9699 10560.0019 219864290 urec Nitrogen Ammonification NA Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5798.3598 3483.0746 3841.3276 3063.573 4337.9513 4694.3335 2649.7043 130878.4978 11546.318 5704.9667 3889.8293 2879.1888 2879.1888 4149.1353 9490.0916 8319.6048 4663.4796 5800.9734 7677.271 2566.9067 3716.2946 7672.2305 2561.9827 13301.5079 5179.2658 7214.5196 2552.789 3950.1805 4547.3303 2456.2012 6115.1344 268638373 alkb Organic Remediation Other Hydrocarbons NA Gordonia soli superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 30218.2179 27060.0116 39368.9931 42596.8655 12803.6462 22472.3335 32116.6927 29677.9665 23439.554 50418.052 20699.7696 533100.5612 33398.2821 92146.9455 39060.1808 19625.1749 19625.1749 17308.4919 58592.9763 29154.0898 47510.6034 46287.3489 54659.0758 21482.5834 16078.5921 49295.1996 42550.6543 78199.8913 31406.0154 44707.0882 16298.5153 24382.3965 30467.9246 16513.2075 42132.1977 357417546 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 15186.4515 51974.4165 13006.4788 9338.5452 33732.6117 11157.0527 6875.8888 3155.8145 6104.7446 84296.2036 7852.4108 127256.0902 7354.041 7200.6757 4658.0632 7507.814 7507.814 8329.6391 13672.2459 9996.0706 4364.6996 8768.3405 18816.5628 4284.9841 5161.8417 10145.101 5099.9885 20235.012 10146.6891 16917.9549 3903.332 8339.321 8720.7573 7249.4494 9137.868 298246563 mer Metal Homeostasis Mercury Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 6143.4775 77370.6286 5077.9475 23431.0361 3008.4924 5252.1773 14069.6588 13656.8643 103749.8971 3852.642 6945.4528 7266.161 8971.4378 8971.4378 6195.4294 16196.5251 6759.3222 23623.8597 15682.4322 17360.6023 7279.0385 5603.0741 10565.9631 5232.7677 16026.1751 9918.5168 10162.329 5118.2822 5438.2486 5223.9393 6581.201 7007.1128 334103610 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 1232740.9413 3500.1161 5055.1125 4575.5989 3702.0752 95438.4794 8799.463 32391.3703 3042.8999 3042.8999 9092.1409 4854.9706 5866.1696 10908.0775 2722.2034 4195.1726 10961.7356 2156.3187 5949.121 34014.8081 294674533 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 4220.6185 4543.0094 4932.2014 116620221 RgaE Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6779.9617 7594.5197 4637.3751 8060.7361 8714.2254 3331.1121 3663.7564 6230.0101 5206.2695 157332.5549 3940.7139 14064.9428 18122.6204 9160.3649 9160.3649 3895.54 8494.4841 11681.4958 5531.2705 13362.4949 2767.0247 3397.2612 7189.5815 2874.3462 10308.5725 5133.335 13139.5528 3325.397 8848.8807 18570.9953 11784.4088 13443.0249 258592928 gdh Nitrogen Ammonification NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 4332.1867 32339.9958 4024.6266 6142.3837 7742.8684 5284.9147 56838.3689 5396.4963 5091.7183 3324.1709 3324.1709 3015.2485 13055.8315 3730.3453 6649.1641 5791.2057 7465.3846 3040.2626 8743.271 10589.4851 4054.8502 1819.9247 2472.9165 2800.0045 6425.2529 6401.391 3378201 tehb Metal Homeostasis Tellurium Detoxification Eikenella corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella; 74698.8021 18555.5841 21619.5209 12462.2836 83233.6663 118624.5926 16329.792 7395.5523 10516.0821 16746.9697 16967.687 413495.8636 24626.8151 33923.1441 23554.1804 12060.2814 12060.2814 34027.5645 51244.8322 26393.1421 19796.3885 48358.0873 26561.8605 32969.2916 44770.2749 31405.9973 20395.4089 369219.8127 103963.1486 37538.4073 21117.9669 21220.4227 24511.8667 15641.8891 34012.4579 83645112 B_lactamase_A Virulence Antibiotic resistance Degradation Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 23528.0158 9363.9163 15804.4446 18376.9907 64948.2818 11857.3415 23545.7732 12397.4479 45721.8014 15777.9052 18400.304 291429.8897 19533.2686 26842.3568 20072.4308 12465.6813 12465.6813 11017.9698 42774.7654 23118.003 16512.0141 51700.2616 21479.1726 12705.3644 18986.0132 28499.9612 17456.2025 53265.7166 35740.6185 32655.6057 12114.1987 24506.9655 21886.2406 14224.2981 18875.665 319924947 chitinase Carbon Cycling Carbon degradation Chitin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 6181.462 3429.43 6201.5235 2534.8223 2534.8223 2785.4092 3384.8422 15835.7126 2823.1555 9674.482 5294.3634 3033.9546 3172.0586 300788798 ben_bcla virulence NA NA Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 21660.7301 85860.4813 28864.7651 17172.0548 5887.2491 19805.9389 53680.4672 11771.1803 20934.8873 22522.962 23885.1165 798118.096 23246.1458 14775.4486 24121.6638 13008.5847 13008.5847 26162.7029 25314.9179 12990.7614 17670.6319 53724.2815 36221.6876 12624.4678 13763.5499 21898.4787 25785.7539 52215.3247 20015.42 43003.5309 11529.533 15616.629 14165.0512 16429.8665 37356.1479 315251516 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 10335.8763 6501.7961 63131.785 10156.4673 6365.7741 39680.8568 5784.3105 5450.7719 9250.9075 4626.12 132615.9454 9861.3493 7935.0811 12536.414 16759.7658 16759.7658 7892.7047 13556.5377 8982.5722 18570.8309 22555.1726 16477.3912 4265.4911 5966.7224 9025.4306 8339.4678 24529.6283 7435.2549 16540.2271 4388.9603 4524.8318 17743.3503 3788.6822 16940.3379 365423625 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6220.1166 4648.1308 5040.657 467484.3916 5138.6427 7924.3072 11901.5841 5180.33 6351.5066 2642.7358 5206.3178 8353.7584 3196.6355 3462.7331 4004.878 3319.2461 7384.9361 41058920 chnd Organic Remediation Other Hydrocarbons NA Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 7825.6442 3073.607 7620.9775 3056.891 7736.6225 333461430 tehb Metal Homeostasis Tellurium Detoxification Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 5756.9125 2761.3291 2776.9145 2154.1005 3617.5231 5402.3582 84943.0172 5426.3904 4906.6229 6320.7704 7557.5621 5097.0631 5105.9153 2606.306 2928.9471 6562.968 9976.3181 6278.341 8082.5029 4989.3552 3457.7086 3195.8414 17942392 pcpe Organic Remediation Herbicides related compound NA Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19948.7087 2143.4993 6150.4316 8898.4427 32828.5482 66134.6444 5469.3809 4259.3432 10054.6432 10889.4583 10889.4583 4176.2237 11889.4847 8341.7616 11160.7533 10209.142 4572.6112 7447.7547 4321.0292 7050.0224 13557.715 27307.7992 15771.9374 7036.7204 3649.2319 6150.8656 6820.627 3764.0193 7434.7804 24346017 arsc Metal Homeostasis Arsenic Detoxification Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 4750.8837 4870.5446 11662.328 8342.8949 2562.1663 3084.1616 2763.7245 4698.6269 6396.3691 3579.3993 208153.3309 7187.9007 8624.3893 4425.5307 10953.1834 8318.0955 31480.0727 10787.0531 8562.1083 4622.3255 3409.1034 8530.5876 3730.4032 12138.6719 4977.8099 10279.4553 2788.4689 5183.2744 4532.3459 3220.4974 8055.5709 381398165 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 16416.5885 8177.7376 4344.057 8944.1044 9468.5289 38411.4649 18344.6196 8198.2982 9926.647 16835.4582 530700.8507 13833.7028 11803.4082 8559.8304 34769.682 34769.682 10090.3991 17319.698 24683.3942 18188.4261 18232.7184 334440.7435 9209.388 15352.7557 15890.6785 24005.3717 39952.7994 28247.8358 16231.362 9283.7057 11034.5433 17396.3243 12625.4706 32557.7304 89053136 mer Metal Homeostasis Mercury Detoxification Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 14000.577 8616.7814 11993.3385 13809.4111 8849.2314 18575.5775 13235.6009 10163.79 7165.0252 12646.7137 14402.5201 558437.3306 28868.6062 30934.6918 9717.5367 9934.2132 9934.2132 7208.7526 43694.3674 594483.6493 9858.9957 13375.7258 17223.755 26990.0759 9940.2657 18484.3444 10066.9701 128768.9403 32906.0219 48488.3888 13590.9066 21405.9149 42147.4673 7842.8657 13037.116 153962638 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 7778.3461 5535.1865 42608.3075 3382.7241 5805.9435 5225.0117 3671.9161 101268.9904 6418.3872 4143.5778 3976.7532 10294.9993 9329.5009 5714.5847 11051.9044 12178.8381 3410.5793 4604.5598 9775.9344 3798.3788 39408.2925 10692.139 9017.2875 4079.5023 6301.9966 3930.8617 3648.4719 6613.0426 302679542 mannanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 93925.3037 22531.1357 98654.5315 40083.9893 10816.4651 7497.0666 50646.6073 151253.4408 140577.8754 98778.4248 40260.9404 57915.7196 5309573.6334 78754.4718 76016.6402 95186.3266 81652.3161 81652.3161 38523.8205 93801.8125 31240.5326 134586.1272 82187.4444 41826.4757 48935.496 93387.5989 104109.958 148196.7177 223482.0242 33660.935 68221.9572 57929.7118 78989.4711 192500.1705 47796.6518 116022.0242 60418443 actin_Rhizaria Other Phylogenetic NA Bolivina sp. isolate 615 superkingdom:Eukaryota;class:Foraminifera;order:Rotaliida;family:Bolivinidae;genus:Bolivina; 4753.1819 130226.0807 7747.5867 3390.3983 2692.71 2065.6736 3358.8914 3673.3271 126757.1235 5663.3697 3396.6183 7863.2611 14326.592 14326.592 2686.772 7824.2713 4496.9327 6653.9602 4652.2725 5859.5715 3328.3576 2915.5195 7186.4637 2513.031 9530.634 3669.7303 5952.2827 3262.8004 6308.8649 4287.9313 2226.755 294345244 norb Nitrogen Denitrification NA Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 4802.9965 41923.6531 4870.6916 2996.3577 2996.3577 6364.115 3015.7547 114227804 tktA Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 63035.2151 1489930.1654 22589.0689 31604.832 6006.3958 14973.663 32818.6041 24715.0304 25268.0776 18438.0287 78440.0597 2558146.2313 61979.4884 11187.1616 29553.8359 26576.8649 26576.8649 33641.4791 52539.0063 17345.1155 73979.2288 92127.9139 33479.8412 45976.5273 16626.9662 45167.8719 50264.5973 58043.4444 77887.3352 27706.8338 11503.8574 27477.3183 67597.5938 13630.7065 18472.9129 169793474 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21113.724 34634.9328 15136.1434 9331.6059 4921.8567 24672.1183 13297.7312 5775.3357 10765.2199 16762.266 220673.2734 8615.2848 8691.4873 17077.4872 13598.7287 13598.7287 40707.5093 46863.8516 9274.8629 7285.6209 25565.2317 7201.8217 12215.861 8110.1456 17550.0394 17832.6184 18762.6568 12934.0555 24010.1087 7562.2084 26002.0029 15085.5744 11432.2506 14455.717 54027835 arsc Metal Homeostasis Arsenic Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 11917.1668 8779.3605 4374.5159 3484.5543 5747.2588 2914.3003 42541215 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 22868.107 18130.384 22264.4755 25418.8921 12518.2833 11868.233 47848.9578 15832.9292 16326.8645 11118.518 523747.181 28584.3462 14244.0171 12992.6978 12274.0845 12274.0845 26026.3301 26416.344 15591.3421 19115.1661 17717.8338 27219.0295 12291.6652 13866.1936 21187.5484 11132.2795 58628.0281 19439.4046 25313.2824 11399.8937 36833.1191 16637.0275 42377.0501 18421.6452 302549732 cmci Organic Remediation Aromatics Other aromatics Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 12012.8819 6548.0468 24838.0869 8708.529 4580.7861 6049.6712 5762.3891 6882.4025 4123.0965 96105.2091 7478.8762 11114.6558 7990.7742 9515.7612 9515.7612 6339.0275 11503.0512 9150.0988 7069.4761 22762.4288 12291.9177 5436.1171 5807.9959 15186.5241 4552.8403 16524.976 21990.3318 12574.1092 5256.9135 8221.8284 14720.9514 4523.5832 8886.6702 192764350 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5950.0849 10588.8343 33531.8653 16168.3155 4861.8705 2919.9388 35934.5116 10325.7075 6846.7547 179165.4688 12726.816 3280.4389 3280.4389 26874.8833 7959.834 21806.9096 7156.355 9414.0515 2965.2649 7050.2823 8336.0649 2605.1492 26909.6715 5697.4842 7024.6139 4741.7417 4320.2766 5837.1454 19265.4904 4407.702 339628013 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 9159.0567 5150.0347 11861.2239 2176.5803 3409.1617 4496.8903 6940.1267 2460.9974 94985.5158 3699.3016 6909.0796 7590.7605 7590.7605 2696.7797 5569.8 5791.5499 7307.2397 11279.6706 2211.0299 3739.5868 7816.8066 12310.1366 5073.0272 10535.2402 2380.7126 5310.8572 8738.441 4561.874 365904644 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus versmoldensis KCTC 3814 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus versmoldensis; 18126.6125 28080.648 7251.372 5369.5631 2960.3564 156818.7896 6623.6208 20276.786 12649.0537 107480.5412 5895.5834 20991.552 4725.103 2920.7216 2920.7216 7948.9508 10716.2139 11346.0234 7148.0935 8299.7297 5968.8371 4246.2657 7840.1543 11100.6012 112487.1333 16560.6343 8227.856 15400.2429 5103.1236 5279.91 24839.1066 155237.6163 9729.458 384251372 Sir Sulfur sulfite reduction NA Coccomyxa subellipsoidea C-169 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;family:Coccomyxaceae;genus:Coccomyxa;species:Coccomyxa subellipsoidea; 86365.7671 51967.3463 31746.2841 54750.5797 44814.6103 31886.7384 18376.0798 34957.8641 26318.9578 72852.6238 34961.1285 32704.9076 133777.8502 138619.9606 206927.5964 39996.4777 39996.4777 106724.1436 97479.6984 28359.615 36757.9015 47540.4116 22255.0634 36761.8877 27527.535 54544.1501 18923.6171 234073.971 38504.0265 54917.2959 39948.6134 44895.0307 45734.7894 18110.0457 40030.2447 302035821 gdh Nitrogen Ammonification NA Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 9863.1332 15239.7548 8576.6628 12659.2086 2818.7188 8681.8952 19611.1257 7269.8238 226748.4181 13054.1903 8334.4152 39268.1771 8886.6706 8886.6706 14511.171 20807.7273 13989.7973 4575.2063 9723.3134 8698.4995 5624.7563 12195.0818 583710.6061 8018.2561 224219.7615 23301.4865 38786.2798 13065.6191 29729.9625 17883.635 11007.9919 7662.4861 283787787 amyA Carbon Cycling Carbon degradation Starch Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 5158.8018 15930.1942 4386.9653 7449.226 4459.2236 4459.2236 6872.1577 5002.7095 6221.9269 4464.667 2700.5905 7161.6117 13052.1488 4344.2463 2942.78 331090204 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium 3_1_46FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 7970.4975 7511.7097 12409.5378 5721.3805 5780.7124 6812.3541 3443.8308 8680.9145 9012.6191 8068.7404 199075.1037 20478.9927 9898.7448 6700.4373 6700.4373 9630.8289 15896.3305 12719.6078 10124.1095 19268.009 13199.1644 5045.3096 63854.691 13878.4823 5576.6776 25823.453 10841.8216 13925.7145 5180.1924 6797.9361 7333.3866 13407.8003 17249.7005 334731350 cueo Metal Homeostasis Copper Detoxification Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 55461.3909 20150.8697 85407.6635 16190.228 28119.485 6928.1237 36853.8005 52083.8207 22921.304 21655.5705 55117.4519 37386.4676 354897.9142 32482.5286 32289.0776 40332.037 44506.7155 44506.7155 16506.2237 53690.8775 24964.8164 48443.9606 57977.7969 33669.0746 48993.0624 162465.1847 51041.2505 35435.0994 150301.3666 71395.8787 70482.3841 31784.7668 38676.4784 40323.0712 25956.9972 78894.6286 317052920 nhh Organic Remediation Aromatics Nitoaromatics Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 24420.1683 11837.8644 49953.2041 9340.5306 10329.5557 4685.2035 12369.0826 14120.8927 8479.0354 12151.6353 12908.8956 9166.8993 292060.1178 11919.3675 22444.485 5034.0454 7911.3831 7911.3831 10294.7504 18803.4663 15249.1401 17452.6521 15168.584 14098.0795 6416.7054 7259.637 30739.9936 11752.6105 25504.6885 16634.7292 20108.02 9747.032 9079.5341 8479.3233 7354.907 23456.9677 339330989 amyA Carbon Cycling Carbon degradation Starch Mycobacterium africanum GM041182 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium africanum; 8928.7918 6817.2034 5932.005 45969.5277 4233.8393 3785.1444 7322.1349 6055.9431 2737.1713 5077.1852 5447.4225 9865.2183 4142.1442 4142.1442 7339.0173 17840.2037 9975.1076 12009.896 12087.0028 14851.2371 5942.7438 4214.9083 12422.1491 4100.3666 16810.7944 8995.5814 10669.6551 6487.8499 5719.0959 5697.0743 5146.3687 14819.7099 3059192 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 17811.1719 11241.4656 6007.5073 11783.6462 5027.6736 7500.0988 8668.4459 3170.5277 9406.9874 12707.353 5018.351 221768.5389 32651.7577 11764.0981 17112.9086 13343.5268 13343.5268 9664.7667 17814.6779 15623.0256 23088.6635 18030.3798 17824.3443 6417.5274 9550.745 19340.8451 7638.9205 27910.8575 19450.534 30832.3241 9028.4349 9823.7086 15006.7747 6031.4172 18546.4108 356697676 pme Carbon Cycling Carbon degradation Pectin Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 48354.4362 39314.3981 21584.7557 12416.5955 5504.0783 17062.3918 49724.3307 37115.5534 37437.7814 74292.9006 45248.4037 879209.8721 117160.7967 62215.0851 43109.8699 45577.1154 45577.1154 36494.194 89525.0494 110553.4226 62881.0689 55626.477 33794.8926 53883.2701 59429.4463 37391.5673 50646.6988 102661.1436 126083.0356 44035.5868 44033.4776 41756.3321 50631.2362 69962.1546 49205.345 151281305 atzb Organic Remediation Herbicides related compound NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 17497.2145 18593.4047 9200.2671 8176.3447 26747.0558 9736.0869 84537.7433 49861.7654 13362.7478 44807.9295 45509.3138 44061.9117 197711.5402 24116.7701 21778.7843 101724.4935 20732.0309 20732.0309 9801.8966 26572.3721 18066.9141 36264.1455 58112.428 12975.5757 13197.5835 13707.2016 21488.0486 19476.6602 93744.4362 19336.4062 48488.1583 38159.2542 21270.6652 33492.3853 9139.7455 22884.2994 333893793 arylest Organic Remediation Aromatics Other aromatics Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 6516.3335 5571.7987 4221.8692 3743.4694 12687.7578 5446.192 64578.8456 5103.7196 14275.2965 7608.7534 4670.1752 4332.6542 7218.5935 8321.2621 3791.151 3936.0144 8430.5057 9734.2909 8729.2811 4683.2727 5677.3642 2563.5657 3545.6558 3273.0922 4450.0525 66969930 phenol_oxidase Carbon Cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 4733.33 5223.1442 4784.0039 5552.7305 10980.2651 3004.3045 6647.5922 4572.3408 6975.8878 2943.218 2892.7292 2460.3848 9506.9173 6389.6458 10952.1493 2376.998 4516.539 156049759 ppx Phosphorus Polyphosphate degradation NA Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4231.3127 2626.5123 5159.4661 4487.772 7445.383 2756.3941 2664.7204 3146.0239 115364871 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 11366.9384 8060.3309 48124.6537 11677.3383 13677.2712 6456.3789 21660.135 7252.3583 10322.9181 20006.5263 11806.362 156217.1755 12467.8491 15396.9864 15355.7757 8039.0554 8039.0554 11353.7977 21464.6269 15228.6737 8017.188 29622.05 55005.1955 7685.6449 7201.8924 16845.9582 22743.8848 27977.9714 13789.8015 22362.2886 9519.4886 11695.6986 6834.2949 13062.197 7638.0395 184195187 catechol Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 21531.3083 25504.1792 17229.5225 34361.4916 4793.3784 29040.035 35206.2309 372934.2461 8937.6497 15663.0329 64824.104 61015.1485 61015.1485 12462.5179 39522.8262 13107.938 26123.2556 45295.0723 24553.8778 6660.838 76616.6162 13781.1738 12708.1406 25747.5523 19477.9248 31693.6601 6442.7318 11802.4997 53062.8019 12650.1557 51248.8321 219677860 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 102350.6446 39125.1541 30141.6505 23625.5733 6128.2346 25054.4426 55171.4945 25119.3943 56796.5018 182246.7249 50667.53 1297598.9902 64612.294 48725.7126 153053.2456 103129.373 103129.373 28220.065 60674.6795 30098.6614 55339.1126 130052.329 208927.531 39688.3229 36357.9939 37135.5662 58116.333 86638.3291 50670.8998 58201.5932 23261.6191 106577.4582 50884.5101 54327.8575 53716.3569 146195508 amie Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6309.9564 25371.0121 3995.9132 4864.6677 3087.1963 143718.2493 5108.9113 4676.6903 8166.0501 4347.9468 4347.9468 11766.5543 6892.0365 4086.155 7614.0645 11415.1528 8462.3711 4412.0811 3545.6523 6919.2371 114727.9975 33170.4175 11482.8126 5726.1034 7215.0131 5857.6236 4532.1324 2407.5788 410370810 catb Organic Remediation Aromatics BTEX and related aromatics Klebsiella oxytoca M5al superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 7425.9803 38433.4953 8751.1544 19185.9557 2378.6872 5951.5038 13097.9244 20076.6814 5723.7342 58221.8823 2499.8448 2499.8448 3757.8144 5776.5193 5690.0564 6531.4149 5203.0697 2770.4199 4810.376 4575.7023 9480.2497 10467.0963 5683.1128 3449.1896 6581.3747 2726.8853 300112756 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 6586.2327 65899.5974 77640.4373 5253.2391 2357.0295 23059.8721 15034.5873 5678.8828 8222.4965 6648.5685 291742.4759 22498.5803 10591.9136 18924.4709 21906.3423 21906.3423 20412.6429 10778.7141 7566.7307 6923.4981 15491.0984 3348.9081 15886.3269 11039.5468 4429.4522 16409.54 11446.1098 12012.1799 9884.7114 8008.9263 6729.497 3515.7578 7079.4535 334696048 ppx Phosphorus Polyphosphate degradation NA Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 9744.4341 5218.8432 10797.1352 9329.9209 3462.5204 18413.8259 156078.5466 23452.8424 7048.5745 280719.9995 7292.4167 8500.9634 16236.4041 16318.156 16318.156 155743.1701 26780.7472 8899.2164 13656.1751 19375.4051 10913.6154 7886.0411 10825.6484 45817.2473 5397.0385 104236.6387 12844.192 81594.9813 8566.1393 18496.7847 375924.2877 203264.7672 30001.3621 151302272 aps_apra Sulfur adenylylsulfate reductase NA Desulfospira joergensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfospira; 26474.8028 34683.2755 8855.2358 4807.6743 25725.0683 21875.7917 4780.9022 15304.7648 16945.8437 13813.9955 160229.6729 28292.2088 41049.7918 21216.153 14941.98 14941.98 48208.2827 135661.7317 13557.5581 15932.6976 23563.7941 17325.564 12107.9431 24476.8751 31017.9284 13232.7194 32024.0258 23242.4881 26291.4791 11354.4278 16631.5949 22048.8874 19041.2279 13768.0907 344338246 nosz Nitrogen Denitrification NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 6353.873 3498.3821 9264.9091 6022.7982 14752.4319 2104.3508 67157834 glucoamylase Carbon Cycling Carbon degradation Starch Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 9447.8105 69875.0179 19597.3329 35421.2866 5748.5096 6588.7829 12651.1365 2436.308 4668.8667 18682.9679 4663.0301 150757.3699 13864.309 9470.5524 11446.4193 15409.7979 15409.7979 23548.5853 19752.7518 11709.1803 14137.6595 16992.5393 11973.9773 6289.1542 6204.4026 14023.7382 8370.068 16135.3837 11773.5731 22957.8026 6111.137 8856.8274 8971.889 37037.8722 15791.0766 183226617 badh Organic Remediation Aromatics Other aromatics Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 6867.5132 5745.1752 2958.4581 3152.2995 5273.8013 5395.9054 2556.708 168310.8391 6419.6087 5142.7632 5821.8679 3985.4003 3985.4003 8465.5069 5173.8638 5427.6533 5866.3532 4426.2615 3061.7037 5341.5219 8440.3547 6750.0533 2498.2641 3981.7581 3798.3448 2090.5787 51893507 arsm Metal Homeostasis Arsenic Detoxification Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 34835.323 60536.04 8382.4413 11639.045 7842.1381 10159.9907 18563.0048 19936.8858 7573.0456 10440.0198 8963.747 381071.384 15604.6362 14264.1172 14851.0898 11980.1006 11980.1006 8207.0931 19227.6163 15660.5881 15091.7048 47767.9562 12655.3543 6183.7424 19634.7002 23633.0074 24966.3211 33857.9953 46768.9466 18958.7502 11539.072 21437.7644 20582.1716 40116.3797 22483.8113 84502903 nhh Organic Remediation Aromatics Nitoaromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 227999.9355 98635.6082 228362.9167 181339.9907 64465.9404 212791.7002 168869.7627 207280.0862 113991.9418 227598.5526 141544.8452 3029986.9273 108196.7717 126139.8514 310789.5973 140258.1186 140258.1186 177027.2833 220350.1636 68995.0525 176656.1975 271406.2232 217086.3351 217640.7782 102175.0689 485561.5171 147012.6094 440152.4504 105731.1357 179257.8264 97206.4267 120458.0726 155148.9356 97224.7104 481159.4881 229818349 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 10202.2387 5004.9974 5187.6561 15607.8778 5713.0221 7534.1109 8298.0618 2328.4567 8954.5138 9136.3004 4613.5651 251707.9739 14738.2221 11218.6601 11948.4918 6977.7011 6977.7011 5490.4756 9956.0831 7923.5706 3927.9882 5748.3626 8234.4881 3553.4319 4764.7823 17513.5577 3365.1572 25806.9268 12079.9627 13577.2912 4519.5373 6136.913 5000.4565 3955.8212 7317.3451 49612434 nitro Organic Remediation Others NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 49026.6133 6825.3319 8170.501 2789.1118 2401.3714 12399.8785 6581.3812 7002.6301 101722.4251 4173.6723 6492.029 5279.7868 5279.7868 3521.8793 9774.0363 4779.9152 5529.2569 7781.6613 6474.9849 3446.3432 3472.9799 8761.1753 5374.8928 12061.6162 9629.7573 7022.784 3495.6114 3344.838 5561.1005 4345.9058 8733.0752 325478476 xyla Carbon Cycling Carbon degradation Hemicellulose Anaerococcus prevotii ACS-065-V-Col13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 11833.4213 6679.1363 7937.1059 10387.1581 7566.9638 8126.7557 7659.6052 8766.6443 13970.1521 4187.3987 309670.5291 16460.1988 8783.4803 7857.1555 5023.1837 5023.1837 256729.1984 20636.6536 12557.5394 399793.8966 15115.6407 18102.6351 12379.0615 64212.0685 13791.8035 5017.521 26735.3557 14417.2186 15345.5657 5540.7006 9463.2042 8599.3756 14944.125 15366.4725 294677369 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 8049.196 7501.5442 2545.0282 2840.0056 5385.9933 4805.4364 5039.1993 3650.5139 17006.7742 2607.2187 2607.2187 5606.296 2956.1818 5518.9411 5227.3375 2972.0377 4583.9599 6135.7549 2190.606 381200989 ppx Phosphorus Polyphosphate degradation NA Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 23416.9526 10824.1232 15770.0632 10962.5501 24092.9282 8975.4653 24106.1055 17919.646 30007.4283 13639.8961 1154928.6042 16081.2287 12755.765 10250.2281 28849.2905 28849.2905 16549.5821 31716.6868 14791.5499 12406.296 16292.2791 21521.0828 20282.6161 20277.7076 24328.903 13866.5298 33060.2617 10831.8844 31872.8585 27533.5623 12341.4776 18252.825 33492.631 22564.8784 350561893 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 7332.3293 20650.0165 11355.1519 13122.8769 24630.0137 29535.6139 4396.6878 3673.912 6841.5305 8051.8818 8695.4478 4538.1746 159455.131 11083.9868 10395.2038 4945.6822 4792.9216 4792.9216 7511.7603 15505.2277 8043.4691 8836.6288 5123.6053 7489.1632 3509.9192 5130.2043 18898.2503 6564.179 17114.0906 10974.3795 14284.9972 4583.1908 6621.4047 11163.9612 4540.6839 10199.0936 107856917 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 23586.6204 12151.0877 16982.3698 6126.7414 38311.706 9787.1949 9914.847 14138.3208 5505.7795 11632.8068 18725.3116 13527.1515 471369.2129 41519.7408 31641.7555 7844.1171 10758.8756 10758.8756 14997.3653 27912.1265 18082.4988 78840.8893 144815.9385 29420.7959 9822.0837 25338.1902 20591.7935 13344.3749 42688.1675 14690.9778 51855.1501 11034.8597 14701.8771 18484.2271 12678.7864 26362.6103 194542117 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 7207.0241 3123.8853 2466.3557 4863.3396 8135.4308 2780.9754 3555.9933 4691.8672 7304.6472 6499.7974 15242.3564 11011.5191 5145.0658 8474.73 2628.3891 7309.1696 2768.5708 4591.0528 4268.2907 15200.7452 6878.9346 164658123 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 4926.8561 4784.4339 23930.078 2436.5972 5032.5394 5113.4265 3294.5129 1984.6027 1984.6027 8200.167 3965.6507 5876.383 4071.4922 14677.9554 5216.0823 2161.0639 2962.7471 3581.4818 2758.9453 209531358 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 4583.3185 2859.6428 6914.4723 4145.9702 5907.3527 5233.8461 6635.9303 3336.5831 3787.3182 3008.0423 409052342 nagg Organic Remediation Aromatics Aromatic carboxylic acid Phanerochaete carnosa HHB-10118-sp superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete;species:Phanerochaete carnosa; 11270.6693 21248.0601 15591.8427 4137.4908 2216.386 5291.2846 18174.4106 9699.063 5165.4377 4023.6701 8866.3362 13090.4029 13090.4029 3395.0885 9896.3602 9106.8865 996197.2063 3701.0557 4746.1663 14415.1397 7036.2915 6328.0544 5552.1313 6320.9538 16152.7333 6074.2303 3498.7697 5244.6289 160337399 actin_ciliophora Other Phylogenetic NA Nyctotherus ovalis superkingdom:Eukaryota;class:Armophorea;order:Armophorida;family:Metopidae;genus:Nyctotherus; 8543.8823 7249.0318 4253.407 2612.7006 4127.6082 11280.1886 5365.8999 77652.8736 8330.4331 4096.1471 2812.1103 2812.1103 6294.2698 9979.4562 4944.1424 5873.8629 8415.6246 4952.1707 2284.1008 4335.8684 7640.4309 14707.697 13401.2306 8644.4312 10565.465 3736.1717 12490.1189 7142.485 3389.6842 8271.0418 374668148 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 15986.2682 12725.6809 18838.3187 9809.8706 12606.0534 16249.527 4848.8603 13360.1849 13034.2115 8853.5756 152225.6 19000.5712 29951.1527 9736.8999 8356.5686 8356.5686 12706.5873 65159.4751 46769.9044 23167.5744 25748.572 21074.3099 15136.6417 8545.0632 24152.2713 16015.8045 91017.5426 78091.4054 40605.9595 10263.3581 19278.4093 13916.7007 11560.3871 63005.82 83025958 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 112018.8628 26828.4613 22629.2881 35800.6082 596832.1787 19595.8799 76902.7499 39809.6003 41307.6656 102013.9777 44589.3935 536807.1028 62216.7335 100031.1082 147208.3071 101441.2184 101441.2184 21209.8625 94682.0843 37281.3051 70301.4192 96611.1508 28543.5759 27688.7998 47776.1085 57958.6076 34034.2034 84137.4865 102089.9686 99655.1962 32080.195 40369.2173 102294.2327 47739.4865 45384.5209 27351195 chnb Organic Remediation Other Hydrocarbons NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9895.211 11159.8124 8232.3778 8076.8752 11301.34 12234.2233 3290.6366 6739.0678 10013.4849 8068.8263 233835.5392 11650.9907 9163.113 10915.2387 4779.2759 4779.2759 6826.2272 18973.2628 22549.3454 10762.5063 11922.5847 14039.515 5484.1802 6899.2608 17398.7358 6804.3959 7027.9081 6092.845 14846.7301 7146.2007 10743.1118 6252.2447 6448.4978 12655.9388 390616436 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 336044.8376 32386.6456 96808.4847 35541.9758 42064.893 300924.1657 69726.461 196760.5306 90801.0404 54014.6259 118485.2569 80052.4129 653316.4406 79335.3639 52572.1111 129004.6324 72889.8882 72889.8882 93394.6408 142209.1494 51402.0693 30209.9446 77567.0146 362725.7436 56512.1498 46025.6741 79151.5485 126239.7243 292837.6482 88286.19 125560.0884 32025.7849 113477.1536 53432.7578 71793.1019 59683.3475 229323403 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 47739.7713 65641.8155 17690.645 7330.2671 15573.5615 47059.1886 29449.8316 20303.2098 32870.8561 122935.696 316747.5617 34655.4431 11773.1752 24950.7975 22284.6859 22284.6859 13123.9059 41781.432 23350.2774 75464.1152 93668.8144 23114.2693 23973.1691 13086.3143 24225.6242 20229.2629 40513.4731 28650.4933 22449.5558 16861.3504 40625.0375 24305.9997 20964.3281 41465.0024 76057023 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5601.3498 11464.0787 7110.3248 3854.325 4504.8192 5071.9437 6344.1011 3655.0953 106974.5323 5799.2907 5823.3983 36580.2957 3031.5194 3031.5194 6774.8233 11758.3249 9987.5156 21030.9198 23388.9026 5621.855 7883.8905 6846.211 8547.5162 5328.7911 80800.9028 13651.3632 15287.6837 4069.8899 5334.9882 9675.4347 6767.6213 10302.083 293615019 urec Nitrogen Ammonification NA Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 108114.5119 19971.3943 17826.668 17982.6757 19824.0895 45551.7474 12159.7312 51496.5276 48584.2157 49348.4632 356246.8298 56406.38 36888.1435 20491.9332 127925.0127 127925.0127 26980.7848 98684.5972 50853.2854 83673.3768 42456.8904 45086.1134 25560.4402 29961.9663 50189.0332 19552.8174 247233.5972 42202.2277 42352.4501 16904.9357 54609.7102 31797.0303 87366.6993 40967.4171 294476488 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 5153.3316 10446.2795 6621.4354 11035.2881 4021.7249 15212.426 4245.3152 8576.817 210550.3611 30771.6248 81107.7715 97177.3108 8401.4553 8401.4553 9967.334 11833.3135 3953.7445 6617.8647 4053.0163 16127.1576 6869.3425 9570.7621 5220.9875 42756.9092 6313.2602 47170.3421 2398.647 9663.0692 5328.2693 2486.7045 6379.9831 359255334 pgk Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 76516.8002 65970.2813 23852.7557 16018.0496 8582.7042 36896.1951 51149.513 35609.6751 33391.8612 65924.7679 53181.778 2722729.9629 40036.2846 50367.3712 73412.5875 52918.7517 52918.7517 25171.0686 90018.6264 48296.9722 48368.3083 92817.7697 48660.968 40090.6221 29181.6314 49566.5015 95608.0656 138450.7219 37547.8569 59723.7905 37375.738 43564.0913 109964.3239 45504.6267 64769.733 76557515 urec Nitrogen Ammonification NA Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 127210.1716 37590.5519 20452.3444 47249.5461 15595.9674 21794.0602 68445.2798 13223.921 34933.079 27621.5227 41987.5059 849872.5005 27225.7606 111965.5178 28220.5329 37780.0859 37780.0859 57075.6862 63917.3506 502384.5379 118722.7982 80506.3192 31633.5602 24716.3777 22591.6661 27193.6066 54876.6713 25379.4452 24240.7013 43041.2052 23429.2316 61146.326 73542.5753 31079.6334 25413.4362 211905521 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18946.9945 21606.0123 6264.246 9601.3726 13311.5652 58318.4118 12408.1711 11733.1609 9655.3726 11774.0987 16889.5402 10021.5029 360960.1828 23335.9704 37631.9016 15869.1975 25894.2902 25894.2902 7391.6759 28633.6478 44347.9778 9779.9938 19913.8666 69294.6864 8576.1462 10733.4288 50193.5704 17031.2526 104072.6567 65251.7226 25289.3522 8173.614 13539.2693 16791.4526 14978.8368 9766.1812 384438500 alkk Organic Remediation Others NA Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 25804.9027 55185.1328 9597.752 23137.4809 6152.4099 4475.3545 10302.5027 3066.1369 11962.2087 18629.3655 20975.3216 120087.9779 7411.9048 13229.8001 23033.9876 26312.7728 26312.7728 6518.4228 15711.5419 12458.1858 38421.2731 11194.505 6905.0992 4459.7252 12243.3869 12270.2346 8566.6554 24679.6778 9093.5615 11864.0593 7629.0857 6656.5028 11383.2119 4862.9567 22019.6707 195952981 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 6596.3274 5832.6574 4394.9058 4220.097 7386.3245 7228.3884 131302.7987 3463.1266 5873.2645 4698.509 3777.7694 3777.7694 6927.556 200539.3 5789.1365 4629.7961 5979.4727 4854.2999 4960.2104 2244.5294 4412.2047 6572.4953 2830.1585 385681787 linb Organic Remediation Pesticides related compound NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 41375.4846 21208.2276 37157.9774 27810.0122 69243.396 28173.4772 34655.4121 37703.2806 14030.7095 63453.9697 136522.534 145215.4539 603452.7316 74373.467 43193.1972 47884.9812 80888.7632 80888.7632 28074.7813 103609.4308 42451.3369 67598.8303 706731.42 56924.2742 33792.0723 39120.8697 159320.5995 65574.1023 337548.565 55301.9542 277609.4311 40048.2172 102643.5236 132229.2855 36676.8978 122628.6567 260089470 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 27063.7642 27776.8759 8576.9199 3761.1365 13957.7898 5085.3795 7574.0746 16001.5558 36279.2087 154365.9325 37559.3727 8314.405 9237.3564 14855.1946 14855.1946 461641.3872 21954.2549 13365.0379 447967.9127 53649.3667 21237.8421 15268.1927 31844.3457 15253.0703 16739.644 28000.8606 27739.9124 14821.8465 7373.1282 11936.0609 14692.5039 151922.4393 31334.3471 115516566 ben_bcla virulence NA NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 162448.2231 20575.9897 98243.7046 376142.1225 136715.833 190054.3902 134339.0192 109375.6198 27259.0423 39375.8286 259992.0819 93504.1758 538173.4829 532590.8322 52517.648 82688.7358 85605.1556 85605.1556 38509.7028 72876.6912 53417.2714 43654.1805 168919.0283 113420.7343 135547.9798 48055.1428 58348.3281 94306.7388 125485.0547 109482.2547 64398.9564 49419.1277 62195.5992 62504.9365 62501.876 253967.9682 222102113 one_ring_12diox Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 20470.1541 9477.7617 5388.7359 5685.8204 3570.4972 7314.4825 14535.1295 66848.6835 1002898.4064 10964.8103 10058.054 5181.9449 3635.9746 3635.9746 4170.7581 19442.5832 4408.6121 14126.8871 5885.4684 3932.5517 7820.2279 18706.0153 5501.0205 18108.7839 12488.0578 16271.2938 5892.1148 13347.5 7073.1719 20591.577 320534819 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 119995.4605 9758.9157 15349.595 10652.8186 6683.7416 28071.5683 9268.1657 25477.0585 29190.1946 23545.3266 477810.1964 41472.214 12660.3888 16806.4413 19178.0768 19178.0768 11981.0542 17908.9228 9565.8632 17731.5649 8729.5615 31374.8248 9325.0172 14207.2682 23664.708 12538.7326 37332.5675 29805.273 31292.8868 15703.8487 12018.9686 35037.1428 20040.4777 24504.9747 374098743 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 12379.7302 11599.6168 15823.3467 34782.0635 99664.2585 3717.0819 20688.6087 9702.541 16900.2635 6699.5103 133573.6174 9164.9155 11085.8886 20918.3882 17705.0467 17705.0467 6608.3986 19265.5972 12438.1783 12907.9552 18522.0907 17388.5018 7880.5664 11027.1198 19300.2194 20046.0859 31507.883 35361.8891 22107.5512 7579.9764 39892.7425 10201.4077 5135.9 12694.9945 304407911 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 5737.1007 3717.2943 84109.5973 4442.5978 4316.6923 3349.6576 3349.6576 7427.7097 6154.528 5269.3376 6741.2789 2382.7565 3819.8411 10862.8599 3592.7382 5455.1609 2062.1261 3467.6162 3732.5792 2680.4404 7183.0762 46308002 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4961.5811 5079.8551 4843.736 3354.5048 2258.1213 4649.2532 6798.2195 3148.841 125338.0594 4929.7142 5322.1481 3292.555 3292.555 4876.6555 8647.5438 5071.2561 6733.9035 7600.2477 12340.8491 3029.2697 3069.9209 7852.3791 2555.0873 13523.5334 5014.2625 8095.0303 2931.2854 5910.7373 8285.2208 2612.4145 10149.0835 159040159 mer Metal Homeostasis Mercury Detoxification Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9062.5243 14204.7665 7251.5873 3486.179 3551.8799 2363.7445 68411.1741 8368.6782 1886.5696 1886.5696 4007.6616 5105.7741 2052.8271 2165.8634 1868.4727 2834.3884 3034.7599 2055.8062 73534215 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 67507.551 36120.7886 37419.4158 45480.1355 18218.4856 8437.9071 21528.6265 17695.837 15554.8668 15992.2225 24305.3219 22851.8022 252616.2285 19968.5639 28521.9471 49621.3722 38366.9328 38366.9328 35374.8307 48898.1597 36331.4265 45169.9743 25031.0468 21120.8172 13745.3095 21471.4532 27761.5234 28283.1916 109263.8453 47448.671 20569.5047 14228.7503 23213.2373 20582.8102 18595.9467 85133.7347 86566915 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 163943.9498 84806.7246 88858.0617 652208.3156 28466.902 47575.3878 111859.5342 64669.6386 102619.7085 89199.5468 190205.3441 1383694.785 151122.5678 177191.1008 219347.8741 165602.8132 165602.8132 67253.5343 150753.0845 60454.9707 101927.9636 1194282.1736 127339.3579 103606.4441 85539.2522 132364.3076 155818.1639 253829.798 138203.2097 154715.0721 78854.6215 99245.453 113439.9538 55595.3879 235012.2716 133912960 nirb Nitrogen Assimilatory N reduction NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 5633.2761 7755.5641 12922.8331 3336.0703 6470.2182 12710.9737 10774.4097 4460.8911 128184.8282 13181.9971 21138.4658 19414.8347 5306.7324 5306.7324 4527.3329 8781.9337 6218.8148 4731.2322 7278.9626 7933.3994 3257.6782 6143.3198 14489.7068 3728.4371 13603.1604 9160.9068 11033.9529 3486.8463 6644.639 12800.8896 3084.0127 6068.2398 291067721 terc Metal Homeostasis Tellurium Detoxification Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 7751.6288 9963.0004 58585.6019 17784.6676 13347.6659 4454.5549 5010.2603 2797.4292 3961.0594 114227803 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 14568.2273 8088.1105 40586.7522 2101411.841 2496.5053 30221.841 64055.9401 5895.7726 40484.2497 10424.1415 259231.9113 14400.0898 142422.5498 24358.8755 11171.3777 11171.3777 10587.6022 23222.597 19014.964 31460.3913 24109.7445 15320.7979 34636.4074 14270.1135 21096.5251 15305.7869 66761.6869 23410.6511 50466.7318 14633.9463 17820.8083 21341.7014 13829.2105 45834.5127 260778296 trza Organic Remediation Herbicides related compound NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 31904.9477 10801.18115 17488.833 9147.4956 13360.4612 28518.8333 17679.2916 32041.9482 43226.6372 20801.5372 588422.6491 215586.1034 55857.3565 110854.9587 19666.2156 19666.2156 18222.4098 58241.4426 28261.6218 133639.652 26501.4148 27133.9814 25411.1828 33072.0633 20776.6562 65189.0932 38059.2291 40008.7011 27884.6741 33761.7137 11152.1857 106005.7623 214042734 aln Organic Remediation Others NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 12012.2706 9356.2052 4591.579 13944.5496 7201.2975 8853.3631 8480.0695 8918.3817 4534.5838 128562.2371 8670.3815 8751.9438 7443.6936 18855.0662 18855.0662 7358.3901 12653.5892 10623.833 11140.2747 10536.0287 14696.5391 10717.6235 3991.5039 22513.955 6837.0425 19255.1791 6482.7189 12670.0575 6001.4767 6536.5033 7053.5019 6984.1633 12812.6539 343461781 ppk Phosphorus Polyphosphate synthesis NA Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 6405.4525 16227.0141 11095.5449 5309.4273 3709.9982 11697.7057 10477.7257 6387.7433 173170.3091 8197.5771 8268.4851 6879.237 3253.7676 3253.7676 19391.9602 10363.6034 11011.7746 8125.682 7343.0726 7637.9238 6183.5706 4787.1845 13223.2126 7608.3996 17781.2049 11216.2055 13874.029 4808.5569 9448.0848 8276.0924 6062.2645 9271.7033 383791645 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 67805.625 5305.4446 4622.0339 16194.9576 8681.7814 8105.2461 10359.5753 14368.8555 10333.3864 13410.9669 221786.1543 322288.23 18348.0331 14287.414 12589.1856 12427.2646 12427.2646 17929.6801 24369.2666 16185.5777 25417.2101 103621.9377 14348.9799 14144.5516 24471.933 18435.3802 9306.2127 50043.1618 17265.9069 26117.0904 11021.7742 15160.2893 29243.3315 12620.4646 23965.8061 55056847 adpb Organic Remediation Pesticides related compound NA Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 33700.1667 7644.3714 3431.4181 2339.4473 3150.1046 5721.6368 4950.3071 3132.406 59814.4759 7483.6492 6339.8502 2198.8074 2198.8074 5965.0337 6745.9444 7181.784 4143.8803 16355.417 4988.3486 3129.6754 4316.4458 9909.4881 2410.27 12425.5758 5634.8744 7748.1713 3030.6183 4688.4585 6348.4195 2776.2619 6517.4808 319977089 gdh Nitrogen Ammonification NA Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 4403.072 6463.8362 2278.8158 2297.7723 10437.7217 5618.2854 5452.4591 3453.4326 2628.2227 8430.7784 3514.1154 2638.2314 3056.9756 23823.9967 87281334 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11810.9657 9969.1168 2591.4516 14855.318 41005.1905 4333.6093 16830.5388 19735.5816 109155.1957 12250.1141 19589.6948 28253.4411 21225.7751 21225.7751 10362.9126 18461.5226 28909.1334 9466.2672 14412.1335 8935.6623 5553.028 17024.3836 16104.7002 11177.4119 81238.9621 77705.0134 20261.6122 4883.6821 12488.1271 13471.8768 5992.53 10080.167 188594588 amyA Carbon Cycling Carbon degradation Starch Porphyromonas gingivalis ATCC 33277 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 5444.9534 4183.965 3618.1159 2649.5098 5094.3475 3250.8376 63739.0921 5054.2617 3847.6983 2858.8205 2858.8205 2529.8133 11086.3962 4029.4563 5455.7489 6806.6339 4991.0941 3926.3958 3010.7732 8232.5469 2728.7715 12978.0781 9151.5783 4599.5998 5274.9921 3589.0174 3739.968 5890.3264 240169888 ppx Phosphorus Polyphosphate degradation NA Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 145067.623 18319.2093 49773.3554 19913.9832 22504.2153 93815.5032 112954.202 33760.5157 25753.1345 53208.1938 34441.0512 1313779.0162 38808.3571 40392.5845 42290.1497 45649.1654 45649.1654 24009.0764 44003.2813 25034.48 73917.771 74325.9688 38133.5602 48047.4491 41778.7601 29741.2837 28897.207 87442.8194 37093.4247 44670.4408 40602.9605 31257.8648 45528.0414 30691.3122 87408.8756 422314487 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16483.7219 41025.8902 9206.4078 59536.9534 11427.5567 14327.1969 27341.0531 135974.9209 15803.4615 9695.834 37616.8933 11560.992 11560.992 8586.7168 26907.0025 15801.0211 44179.2085 19358.883 15414.497 10145.8234 22676.9405 35407.3644 23366.8973 48045.6886 50460.5139 17362.8225 14894.6519 23663.8364 14371.6715 11499.6876 19445.9419 24349751 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 14011.9248 19177.4326 8604.0546 10010.4782 14163.6434 124811.7133 15782.2367 6699.8264 7732.4237 7570.9554 7570.9554 7050.5018 28953.8278 4476.8582 5631.5588 7346.7552 3116.6811 4644.9455 3701.2781 14781.4308 7385.3825 7553.0335 5504.2411 11349.8891 10192.052 6937.5067 19000.2999 56798407 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8886.4482 27431.0681 18542.6659 4476.7329 5757.5697 6518.7 12452.0061 8443.1653 12064.3755 18896.4447 109102.0008 5179.71 16052.9252 10728.0396 4419.1885 4419.1885 4624.0772 11524.4932 7074.7146 68265.2394 10479.454 3899.0622 20740.6297 8739.4811 5584.2078 20753.4167 7867.6853 8380.6712 5080.7677 6843.7373 6227.3162 7019.2813 8189.3978 110678855 nosz Nitrogen Denitrification NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 4548.7976 5523.6991 11045.9285 7174.4921 87532.3274 6069.3937 3735.8828 3212.9142 11710.322 8089.2937 4704.6822 5912.4668 4783.7052 2498.4921 5106.9471 3386.6488 8620.9021 4948.1618 4593.7337 2457.1564 15219.5073 2294.6965 6710.996 384116176 nirb Nitrogen Assimilatory N reduction NA Leptospira licerasiae serovar Varillal str. VAR 010 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 4506.2665 1732556.9447 2351.9501 3992.0316 153667.7412 3821.1813 3773.637 4822.5968 2026.7113 3464.5296 3323.8938 372281953 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 26617.3455 20462.8851 5987.189 9505.583 22893.4739 13301.3377 20039.192 40104.5358 23261.8541 24009.8919 24327.3131 707925.429 46571.7874 39339.33 30309.7467 33569.4789 33569.4789 9780.4897 79833.2616 31868.4488 22282.2636 26328.1286 33805.4611 23719.1622 16796.5125 31156.2271 28322.8761 77209.7629 35753.3548 34489.3205 16413.6109 35127.7734 32790.8309 16601.3648 45711.158 115360323 xylc Organic Remediation Aromatics BTEX and related aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 58468.2891 19924.5336 5429.4707 7912.9595 13511.0539 39640.3618 14267.8252 9064.4979 21313.1584 14285.0044 175555.3007 75392.713 104631.9851 41705.2779 14687.2805 14687.2805 14377.1506 28396.1514 15871.1167 8009.7895 8556.3187 8112.8945 13352.1031 45222.8751 15048.3595 37602.9402 28063.1321 20635.8669 38270.0134 13710.498 25389.4309 14255.439 15666.189 10725.0029 422313915 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8437.1762 12202.3132 4319.4528 22406.313 8884.475 10792.4223 16004.4986 15499.3354 214380.0193 9218.3356 27459.4794 5532.5153 7947.0778 7947.0778 6235.7005 28165.4604 95547.9362 10592.4763 12518.7819 5909.8231 7874.5005 14493.6605 15082.6083 11475.9022 61217.7037 9911.0464 15072.5606 6263.1983 12072.9955 7127.5246 7472.7413 6956.8728 291545122 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 49858.0742 177256.7043 18817.18 22594.1991 48073.2718 4749.4093 14994.0933 26868.5955 64563.4524 37793.6121 24322.0899 16803.831 448086.2257 113358.7188 35957.1672 18247.635 22264.2521 22264.2521 13896.8685 41195.3214 39532.8793 35343.4293 52148.9993 33114.0854 50580.8792 60499.9053 33195.2493 40648.4771 56521.494 34641.8542 41003.5573 19344.8188 42134.0902 59409.1964 70529.0071 55826.3354 9858069 pmoa Carbon Cycling Methane Methane oxidation uncultured proteobacterium pmoA-MO2 superkingdom:Bacteria;phylum:Proteobacteria; 9614.6046 24714.1478 5514.9957 4600.2444 2088.0262 9441.2029 5870.2824 9150.0323 8975.4453 8434.126 84882.1559 7491.0257 10405.0142 761318.9125 7280.8882 7280.8882 7032.6428 24150.8794 9079.4717 15974.9331 7734.4799 3997.1999 2966.7188 13738.6659 10709.9497 7438.5148 17340.0869 8956.5315 8236.9517 6955.6021 21904.3446 8557.2144 387962.2233 8265.9292 389865311 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 97827.1146 43927.8015 80638.619 103553.4878 205325.5642 51346.9389 64934.681 76260.7679 60523.298 45688.6543 83941.5397 52588.018 1090934.7855 96335.9779 77599.8988 207122.9751 60261.7933 60261.7933 46428.7795 141080.583 62150.0434 72415.1148 988356.6979 172560.714 115427.4461 59576.7148 94068.0018 48822.8358 134631.9432 121072.6461 97453.4519 40598.4085 77174.5092 80831.1769 44399.0856 103280.6822 219563148 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 13109.4216 5571.6768 14576.2314 3974.1528 5386.612 4800.0884 5283.7791 7585.8073 9507.8293 104723.0992 16338.0074 7458.2518 14842.8801 4425.4683 4425.4683 6620.9007 13956.7309 10572.2784 12186.9663 11089.8865 60166.4349 5004.0125 4548.3222 22602.6447 5270.6343 11369.0795 13548.9602 10025.2042 7830.1296 5995.4465 13097.5976 6691.7108 9325.7259 221633906 amyA Carbon Cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9614.6043 4878.3637 11107.8122 5150.9689 6201.8055 4517.7053 9246.2354 10121.7566 5752.3242 177623.7671 10014.0048 13299.1293 7287.4661 7635.7805 7635.7805 7291.5902 16580.6381 11535.8911 10406.0723 9950.6966 13473.8062 8715.8612 5442.3814 11573.0673 53803.101 17455.0074 16276.0169 13288.3525 7750.253 6344.7069 8201.8785 6365.6913 13702.0875 15077471 dsra Sulfur sulfite reduction NA Desulfovirga adipica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfovirga; 4598.41 7456.5028 2430.8763 4613.5574 4436.1509 75407.2817 4052.6601 3881.4572 8807.9698 5069.5127 14078.8346 6643.2756 4213.0695 4326.9367 3000.4203 5727.5663 9513.8821 5508.4666 5748.5491 2291.3355 3839.5726 3783.7854 3676.036 7185.9507 288867259 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 17934.6364 11852.3066 7934.4687 5592.7382 1801.7132 3818.0708 4695.2824 8875.7891 27026.9165 7482.5441 111413.2904 8196.2094 16553.9051 11817.3007 21071.6544 21071.6544 5670.1406 14325.3602 4953.5562 12102.6485 14894.6588 8793.5971 6027.6503 7113.6431 11644.3327 11128.4913 39350.9394 11546.1156 16538.159 4844.5753 6522.272 8324.329 6617.0235 14254.3504 162449194 dehh Organic Remediation Chlorinated solvents NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 8043.443 20179.2484 4866.6644 3951.5478 3547.5987 2751.6246 5513.368 5562.7638 2702.1491 142354.3063 7299.9791 4763.2925 3425.7518 3425.7518 4297.8883 10083.8418 6958.3776 5896.2276 6811.2243 7641.5571 2859.2285 3818.6853 9138.5366 2542.9553 13195.1877 5200.2003 7992.7543 3467.1449 4922.3672 3763.6037 2863.65 9821.636 396482868 nagg Organic Remediation Aromatics Aromatic carboxylic acid Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 6486.604 51698.6394 10540.3858 7194.4258 7907.7343 13346.4915 6654.7638 6005.8978 5843.7664 10705.7668 5473.6968 319416.6476 11178.9116 10635.8584 10534.5022 6420.3627 6420.3627 4907.2671 18624.8523 10552.9109 8704.6869 22617.6594 23882.1347 10261.0727 4409.6256 14951.9143 11633.2359 26052.4843 16730.5623 17618.1508 7924.3495 13838.7626 8023.0421 8007.0591 6720.8786 62512294 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8679.1813 4490.3827 8946.6283 9000.4505 4936.7283 50905.2632 7615.5299 208825.3766 17909.7868 8957.6062 22081.1211 5175.1004 5175.1004 4271.6694 11417.8711 12131.9303 6274.2598 13530.9526 8260.1358 3320.0912 3459.4251 12772.5992 23488.7642 20951.0002 14400.0177 18625.914 7114.2086 60029.7242 10424.0995 56943.5887 7614.2762 332665264 xyla Carbon Cycling Carbon degradation Hemicellulose Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 24871.3371 9071.4663 172910.3687 10332.925 12311.3277 9420.4167 41117.4293 28366.509 23022.3389 15722.294 394630.2548 13334.5516 14786.3016 28874.3398 10402.6643 10402.6643 8978.5042 27181.0555 13340.409 38484.4429 11323.6219 23477.442 9299.905 30452.5987 49479.1399 13375.3196 55776.4148 18545.3952 20608.2667 17666.6984 14740.7392 16311.8804 11786.8055 16258.138 260887857 cpna Organic Remediation Other Hydrocarbons NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 16103.3536 5384.912 9785.0696 15174.1375 6279.9096 5232.6582 11272.9557 12107.1205 11247.7478 54193.4108 12896.2618 296751.417 12764.6032 14657.9494 12079.3714 7855.6727 7855.6727 7139.8378 40754.6944 36949.6523 43681.0962 14417.9818 36380.9872 5874.5032 27718.0322 18271.6439 12597.9503 32692.3709 13702.7319 26606.6652 10347.6299 15392.3343 10394.8465 7537.9851 20995.515 89344649 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 22793.0758 2203.6358 4932.2558 3055.1222 4704.6034 2941.0029 95287.2072 8020.4359 3616.8815 1813.4644 1813.4644 3560.2526 8868.8047 5974.8666 4044.3589 9011.2291 6560.0435 2655.5603 2309.8122 14974.5483 4792.2665 13506.5749 13515.7867 7132.2061 2868.9151 4442.8739 4612.064 5464.345 10820.3803 39976129 ara Carbon Cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7860.9191 8381.9497 6968.8398 5673.0278 4716.7536 2159.7697 5301.2257 7249.3079 3309.6599 107998.0795 6681.9821 6905.4172 2435.0893 2435.0893 3158.8499 7942.6168 6210.9502 4711.1065 5425.2279 8170.0798 3185.711 7109.9234 8460.2745 3045.7567 11283.3802 6264.2342 8453.4174 4368.5958 4581.0921 13712.6523 2732.2619 7381.6427 87281235 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5537.823 48888.7588 6145.7669 9921.9003 9115.4563 5052.005 28292.2708 5075.4196 6587.935 9113.4987 5645.708 9721.3071 9721.3071 3355.0141 19071.0844 12145.4368 7176.2584 11699.1565 9188.9661 4136.7254 7090.523 14587.7169 8728.4273 16590.483 11065.3985 5915.6071 6384.7195 15439.8489 9621.676 48589.9823 269963230 chitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 11113.5713 3046.2975 389871545 urec Nitrogen Ammonification NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 35510.6968 6841.327 6057.3131 3096.0438 8362.5518 2646.932 14211.2691 21373.1292 289265.9051 102647.5813 18607.094 17967.3216 44007.8238 5701.408 5701.408 26468.5524 208480.693 5037.4252 8570.3942 7788.7007 6790.9075 4744.4978 9436.3513 10898.9837 35824.7301 24394.9772 11879.4367 10825.6484 4551.795 8502.4498 9627.984 17142.034 8361.0068 94987316 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lawsonia intracellularis PHE/MN1-00 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Lawsonia;species:Lawsonia intracellularis; 13192.0529 7006.6507 7946.3049 11175.2769 9609.4197 38406.2764 5846.552 9789.9488 8987.5304 6020.3619 180133.4309 11648.1718 11668.8014 10362.3697 10929.1595 10929.1595 32283.7118 16658.6399 9179.7676 112905.2798 14693.5789 12009.03 5405.8034 5994.1434 12644.0906 9807.5592 21309.3288 7179.2579 13678.5328 4704.7227 7285.7532 7701.3734 5934.819 12384.0545 112379573 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 4980.8701 14278.0109 3582.6493 2821.302 163738626 FBPase Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 11515.7509 47814.3163 9303.4081 6049.9799 4877.7911 44023.3721 15636.27 23325.2387 33574.7431 69825.4398 4703.1682 4351.6982 47878.5113 3991.2896 3991.2896 3657.9522 73538.6916 10052.4865 6533.9513 8709.3824 2907.4356 12457.8366 33407.5479 20150.4237 31254.63 15705.5654 12550.9663 3250.2355 9457.3628 17525.1725 15060.5164 81230.4285 361055477 cysI Sulfur Other NA Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 6482.0214 6404.1716 4461.9707 8094.1651 5729.228 3406.048 3848.31235 10878.22935 7468.034 3444.4061 117461.8783 7949.19865 6520.5569 6300.1224 3935.2515 3935.2515 5830.4824 14089.1592 8479.2984 10853.0498 10327.87765 9093.83135 6201.4445 4064.93335 9099.8939 3878.9853 17314.16785 7567.53185 9845.78355 5319.8603 6503.5067 6257.37815 3887.13905 10938.31835 374302818 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 107915.0642 2037.9078 2532.2811 3849.7485 4800.8322 3477.6744 157758.2514 7896.7118 2781.7427 2781.7427 13911.8718 173044.4107 5173.2882 47962.9526 69625.5493 6436.3307 29481.3206 5740.202 46323.7159 10456.7807 2324.701 5201.1987 54230.8198 2251.2279 5094.705 299738641 nagg Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 77924.3973 38503.5961 35038.0413 77479.2291 63907.4743 26916.4427 60065.7014 37005.3452 36713.13 58826.6767 64647.2945 40026.1834 2910082.0801 67963.2175 83247.2137 84375.1354 47246.1099 47246.1099 48483.8988 75306.2658 43697.5954 64696.184 105514.918 93684.523 37214.4662 36911.2926 57442.7448 25912.4421 113828.1113 55164.9357 79029.7653 32382.9544 47461.7421 61792.1824 26546.4232 78251.5043 219858153 pme Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 6912.01575 12718.6247 5234.787 8717.1629 7862.95045 7563.7712 8101.6577 10409.65595 13980.71575 17775.3342 250223.13 9243.6289 12411.42215 13450.8455 7743.681 7389.0135 6832.46265 5266.26805 3566.8403 6813.7195 17034.9394 16383.9152 12908.24285 10920.16775 7182.8748 8273.2153 9516.0914 8414.4019 271498891 alginase Carbon Cycling Carbon degradation Alginate Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 33684.5934 16396.2423 12348.3253 5309.4401 5325.3415 13298.1609 10200.6597 13576.9585 84313.0762 16004.5963 493297.3219 12828.1631 12403.6447 22580.2151 6216.8357 6216.8357 7715.9507 23122.451 12761.9826 21818.2594 131323.0048 16101.603 9187.3747 7242.3828 16327.3888 12004.1789 61567.1543 18547.327 19575.8471 6687.2565 10755.3419 13367.3795 6007.6979 15998.5268 354581042 terc Metal Homeostasis Tellurium Detoxification Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4850.3174 4229.6639 9204.7784 3600.1585 2517.1867 6386.141 18392.9466 9849.7856 175237.4555 7874.5272 30361.5162 9205.4034 4437.6529 4437.6529 7262.7955 15548.9714 9760.359 5336.3885 5630.5586 8008.7686 5876.1009 8256.3307 8760.231 6808.7135 20077.5174 6829.1255 9747.3959 5351.4423 7179.5228 9575.6216 6888.4195 10444.0442 373478804 xyla Carbon Cycling Carbon degradation Hemicellulose Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 15124.5022 51959.7701 9454.4465 44750.6542 3240.318 7534.4228 45597.9563 12612.6474 21614.564 5158.7648 1382800.6538 7845.9723 8872.7266 12134.3497 7129.2049 7129.2049 6233.3065 17408.0883 13023.6508 4690.6558 9692.4051 6869.9805 5203.1954 6459.1163 30121.4533 12728.1444 45607.0182 16017.6207 20992.2717 6115.438 7075.4099 20331.7537 8488.0819 17335.0155 158523516 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 119296.9181 84736.0047 77378.1171 420364.0914 56221.5263 76125.0226 103952.1748 375767.1895 70395.4732 96733.0948 50801.3624 1402406.3432 66541.631 167841.5032 563210.2158 81990.5079 81990.5079 37391.4941 104625.7359 45748.6825 282854.9258 71718.8604 58146.546 33900.2549 51134.1536 60565.4483 40288.3932 202385.9476 44913.1664 77383.8946 74377.9044 41652.9577 58830.511 49434.7801 122789.8274 225167364 nifh Nitrogen Nitrogen fixation NA Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 22924.3076 4724.6058 5439.0454 10411.317 5454.6828 4211.7707 224818645 soxY Sulfur Sulfur Oxidation NA Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 37740.2649 22660.9604 40995.7806 32515.9344 5940.7484 13444.4315 91959.884 5576.1326 11246.148 20098.2725 19767.3677 287020.9143 30997.6236 40968.6773 101141.4682 24395.5501 24395.5501 13027.0849 41667.8541 19568.7545 72390.3127 34519.6011 34566.0495 12736.4281 20924.6059 21456.2922 17970.8495 42494.901 38203.636 30749.9051 124069.2812 19373.0246 36306.7114 10609.3532 35543.7052 120405358 pcpe Organic Remediation Herbicides related compound NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 23937.0835 7143.4202 8162.8602 13927.88 12286.4401 3757.5567 7881.1147 11691.6325 7265.4952 802183.7199 8866.1624 9859.1795 12411.6509 4767.8654 4767.8654 4054.8434 19494.9 5540.9103 10471.7178 13914.6821 17981.5009 4475.8374 4639.7535 9805.6054 8142.4954 16036.7807 12538.6006 11772.2867 6289.298 6993.3634 14630.1296 5205.4297 16822.9744 260221223 vana Carbon Cycling Carbon degradation Vanillin/Lignin Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 17404.1083 15987.5923 64348.8676 104682.4504 105781.0342 197059.1738 19380.7504 14275.8548 22876.6916 26106.3774 18079.7508 592921.4521 29478.6803 47716.247 36142.3095 37695.5898 37695.5898 22046.5045 45505.0924 39378.4657 12976.1276 24805.2454 32965.9787 21506.9557 26205.9021 49592.6125 44953.7087 89324.3973 43686.8524 48218.5924 15037.0602 23494.4846 18440.9425 14159.376 29901.6631 326207272 dehh109 Organic Remediation Chlorinated solvents NA Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 60092.9242 29501.4242 56637.4705 19375.4757 79690.0777 15095.3207 85910.3151 18133.5775 14588.9626 60776.2495 307863.5594 26780.6138 252799.339 35720.289 46519.064 61144.8789 77503.6499 77503.6499 54446.4518 58917.214 19895.751 232240.0396 33397.4064 20423.0791 19289.3234 135621.9661 55456.7029 37360.4015 1064297.9868 61717.5774 41283.0606 16383.1889 52110.4399 45632.7378 31166.7091 25407.5211 356660458 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 15093.609 265638.2167 21337.2456 17879.5021 5743.4081 9526.3081 7141.9558 17875.3102 7923.5332 8107.8445 154821.8316 8690.4589 20164.2492 9810.8408 40333.7035 40333.7035 4343.1704 15324.0478 6231.6365 19113.3651 17815.3533 13488.1067 8007.0393 11704.2185 8755.4156 7828.2683 19260.7695 16914.8959 10632.3828 9576.0992 20081.1076 18972.3966 6613.1511 29457.5754 304649884 sqr Sulfur Sulfide Oxidation NA Mobiluncus mulieris ATCC 35239 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 15028.1505 10740.1565 5801.513 12451.5704 34963.1768 6957.5843 19564.8605 16730.0522 6625.2474 21770.2729 23806.9168 10049.303 456499.7081 20355.8062 22130.7744 11101.8255 6309.3985 6309.3985 16186.7671 50677.2331 38697.0811 22580.407 19499.1189 28980.6675 12398.0512 15215.0068 29124.5495 20026.2319 54302.7514 16475.6921 28353.594 14903.3709 23351.6613 21927.8408 13060.5353 36622.262 386852497 nira Nitrogen Assimilatory N reduction NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 314088.5873 1886446.8194 1339927.4292 173717.2903 1207939.5062 479958.1854 205627.6129 307210.4935 100253.4869 311519.0448 293926.9924 213087.0298 6506459.0052 346472.8027 526599.4382 720041.0697 583714.1656 583714.1656 285700.5736 228639.899 160652.7375 277011.5116 457567.0011 503272.7493 110189.6569 201022.6181 272740.7834 212347.0359 480803.277 438281.5865 407515.7244 112395.391 153197.9786 208384.1558 172285.0407 240328.9279 115449825 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 21760.308 37745.4765 5489.2368 50450.6349 7359.8223 7609.7938 12685.5149 19157.5651 13019.6674 7635.1747 181352.9517 11226.323 10566.6538 11512.9623 9460.9462 9460.9462 7496.6035 21565.033 9450.6598 11027.7233 10294.8431 8723.6721 6496.801 52215.9363 16570.6686 7996.0655 22221.2909 12960.2385 15465.1779 5028.5946 11197.076 9757.5132 10117.2076 22010.0868 338811699 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 24406.5935 15108.4257 23108.4565 50036.1736 12650.0068 5943.2494 25728.1227 80114.0012 11476.5067 25386.4235 24483.9783 16269.8027 1294926.0084 28164.0333 25158.7278 30641.0556 21416.3752 21416.3752 17534.7308 36290.5273 22622.31 328222.6949 39586.5788 41326.71 27588.728 13887.7051 52888.3401 83993.8856 52121.7051 71361.7829 28754.3448 15010.0431 19870.5918 23712.0696 19027.0271 39418.8096 126236583 phdk Organic Remediation Polycyclic aromatics NA Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8498.753 9781.1169 10547.9676 6606.1481 11093.4621 10204.9984 186550.4925 3870.4547 64950.6652 9863.2297 15755.1382 15755.1382 6726.08 5288.2151 13200.3443 3578.7015 3861.5468 8493.511 2587.5103 10392.8743 6504.7199 14976.5581 18369.9828 7329.6685 12636.704 3520.4567 6169.0713 336105479 mer Metal Homeostasis Mercury Detoxification Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 4869.7106 10982.5754 115048.8423 6965.0763 11193.0723 9979.7831 2178.6049 5394.2462 10797.5127 2316.4723 2316.4723 7550.8863 4377.3199 2622.2712 7379.0557 10994.917 4328.4084 2749.484 4711.9864 54310028 arsc Metal Homeostasis Arsenic Detoxification Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 11571.8198 17845.4281 157248.8747 5138.1661 10327.2033 9463.7682 321161982 RgaE Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 54630.5097 70729.858 21372.1041 28371.461 94060.934 36718.0298 25791.8364 54106.7196 188049.899 30343.7415 50134.8727 45922.7596 763409.4214 68008.2977 56747.0623 95058.3406 45807.1584 45807.1584 121343.3885 67988.7446 35696.7399 30702.8546 59764.7443 147160.8237 133826.4868 50584.1607 186933.4183 42009.7518 113071.4144 75141.6103 73039.9665 153657.7341 56696.765 59373.0136 34081.0815 122028.6582 295696946 gdh Nitrogen Ammonification NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 9295.1921 5499.6561 11701.3494 66969928 phenol_oxidase Carbon Cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 7312.6108 10751.7001 8220.4192 10544.0798 1834.1087 6178.4992 4066.4509 10177.6098 3641.7643 5968.6769 4312.3344 12865.4867 12865.4867 2931.8303 10679.3537 4033.0986 13749.5201 2090.3911 9551.6886 9742.3983 13443.742 49983.7872 8670.2844 8899.4471 3961.733 3683.0442 7315.4309 8720.9833 238926131 nrfa Nitrogen Dissimilatory N reduction NA Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 11839.3139 6680.3659 6682.7276 5998.4066 6840.5915 5033.6771 9778.9716 17140.8395 13842.2072 209205.6721 15224.9414 9924.1656 6651.4422 7847.2562 7847.2562 6758.4776 17054.4664 11718.4916 20798.953 13857.9661 43393.3356 11677.3209 6138.4328 14812.6122 6689.3296 26925.182 7829.5625 16829.6443 5968.4585 9502.785 8645.173 7944.515 11429.5734 22651419 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mendocina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 32374.4536 14598.8808 33030.2027 24694.5522 38148.0994 13986.331 29395.9281 19623.4453 48564.7549 36139.3236 53422.3384 16192.1041 1365188.4717 28868.6989 37712.8776 21875.7172 22927.5616 22927.5616 18393.8386 27800.7503 20158.9072 39424.5359 36961.3374 23199.1789 11191.0981 16365.1508 44505.634 15385.5202 34366.9044 27268.8666 29012.189 19503.4036 9396.9259 28036.3127 13703.3331 26622.2643 262083617 catechol_b Organic Remediation Aromatics Other aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 10388.5323 8258.0442 44396.7736 6125.3868 2375.0784 6346.0006 12295.6968 5683.3981 129730.4693 7598.6293 32880.0225 15912.6282 17037.4803 17037.4803 5329.4176 36674.5196 7782.4322 12378.4267 14068.2387 5085.4141 3120.7923 6831.3814 8305.2274 16767.49 29251.9149 14850.4602 11645.3946 7026.7466 10129.3401 10778.2894 3126.3695 66840867 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6216.1668 41108.2745 4149.3357 13699.5588 5399.8663 2504.7797 2320.0995 13547.102 4848.4143 8415.81 10386.5005 5297.3803 6846.3788 3051.0162 3321.3641 2894.6126 47057.1598 5550.0135 4974.7696 3417.2977 5112.4811 5972.9868 2312.2736 6920.3027 333924484 dsra Sulfur sulfite reduction NA Desulfotomaculum carboxydivorans CO-1-SRB superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 4978.0518 4797.3793 5050.9325 3564.5881 3118.9981 4328.5519 2345.9966 58084.9981 3480.6067 4193.3553 2641.8042 2641.8042 3427.1736 8398.133 6046.1321 6013.3639 4860.9033 11414.744 3207.8257 2633.2387 6802.4895 3111.052 15146.252 5452.3536 5679.3358 2777.6219 3171.2022 3986.7815 2075.1787 6928.5903 91977420 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6184.5298 6370.3292 4933.8662 2982.7968 5859.7659 5496.6138 92618.4567 267209.3037 4969.6821 2146.9741 2146.9741 7304.7797 3778.0779 70052.3843 4612.7744 5915.3339 103277.9613 14406.014 10688.2906 2541.8344 129820.9144 6963.4151 5875.1505 2951.0014 6336.7563 4730.953 5703.952 9813.1345 10441632 xylg Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. JS765 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8891.1501 212437.7428 62332.2809 10516.5714 7751.9697 8033.5594 26532.6096 3311.7221 10057.8391 7716.1293 128002.7392 13229.4381 7737.2399 4966.9509 4499.8489 4499.8489 9236.7368 12872.3372 9193.934 5440.2924 10630.8527 19774.8302 10992.8382 3988.4886 16409.4289 5244.3854 25918.5984 14347.6924 11719.2669 5785.4715 6606.6329 4445.4791 4328.9991 11465.9488 356658854 chne Organic Remediation Other Hydrocarbons NA Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9479.6563 7831.6855 9280.6004 2999.5398 2325.4166 5518.3966 7944.3623 2692.4848 244022.2839 6162.4465 8733.8394 8100.7418 3993.3 3993.3 6339.1601 11536.36 9696.0595 4701.7404 9629.4617 8178.166 2703.8203 3366.8242 8173.7456 6176.4383 13224.2287 14726.6417 8602.6912 3875.9634 5562.224 4042.7102 5011.9689 7133.4814 169665537 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6571.9614 19067.9106 7668.0688 7147.356 6992.9533 5116.6981 3004.7479 5251.5838 5802.8851 3628.3128 765753.4863 8391.3132 6011.8433 6928.4855 4201.2168 4201.2168 6188.1064 11127.3103 7500.1408 9415.1346 11307.4159 12933.4511 3909.732 4726.1847 8878.6902 4010.0129 15225.8898 4562.3844 15237.3272 4152.7159 5616.1155 5111.7037 3936.4198 9667.4445 256690899 glucoamylase Carbon Cycling Carbon degradation Starch Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 4189.6538 16690.6203 2747.5892 124503.4292 7447.9634 2267.0326 2267.0326 5125.9883 4426.06 3544.3628 5299.0406 8226.9801 4645.8273 21737.8603 126650255 urec Nitrogen Ammonification NA Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11653.5855 41843.8884 24095.9449 7110.9806 13522.2364 9345.4016 8113.6761 12440.3057 9231.5776 21522.5001 387960.4401 20139.1722 12436.6052 32846.5108 13350.4154 13350.4154 90359.6612 20322.6914 16227.5126 88225.2313 14094.3429 25147.0615 7691.1044 7184.8644 21722.5355 8002.4208 39849.0492 13034.0289 18149.3977 7298.1783 8789.8279 14402.1062 5948.9595 18608.9897 219965760 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23715.8028 80085.0258 35173.9512 53647.0565 149876.1974 34867.0866 25777.275 9899.1786 29290.2263 37219.9606 25218.2643 495085.9413 36802.4826 61506.6478 89086.9471 23091.3885 23091.3885 29377.8058 40233.7323 19769.6894 27265.6688 91763.8969 29060.7669 10118.833 31752.3301 62432.3974 44790.0292 41244.3295 113978.9435 104258.5322 12805.7539 75808.7664 63005.7857 400371.0082 30923.6134 357226556 bphF1 Organic Remediation Aromatics Polycyclic aromatics Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 5858.6898 13004.8875 3614.7273 3438.5443 6315.0251 7501.1096 5260.0314 2060.1522 2871.6587 86284436 pcag Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10033.5868 11962.7965 9314.2072 9646.3841 11263.6086 4408.7538 20316.3468 9593.493 7433.7042 133746.4141 9360.1734 10487.9726 5363.7345 4832.6403 4832.6403 7676.7889 23295.5203 9692.0171 12814.951 19808.7147 21896.8788 6636.1259 8977.0426 15101.2469 6750.4651 28609.9036 19687.8557 17807.3024 7574.7385 8229.4463 10102.9731 9640.904 15268.3273 164456010 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 25436.058 45613.8964 9389.9129 3005.5598 17808.0581 4923.354 17701.7027 92658.8385 9542.5391 7046.2625 10488.3069 26310.1102 26310.1102 16471.6348 19076.7184 5696.1169 8446.4777 9833.4902 4109.4544 25791.5092 8250.689 9480.3601 7268.8415 61552.6942 12641.598 16388.9318 18728.1916 22658.3581 9629.9013 4922.2382 5503.0048 221739355 pcpe Organic Remediation Herbicides related compound NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 130100.4719 59037.7425 2020616.8142 336553.6491 70120.2796 37814.6397 61920.4062 107258.3456 72070.9343 60899.5328 150054.458 100607.7403 5214653.7257 122607.3506 390740.4247 86588.2296 189231.565 189231.565 150574.1258 143449.1137 55816.6406 90541.874 381803.1033 89567.4101 86942.5986 75350.2531 132011.2777 125033.924 160920.0963 84624.0272 192019.0246 52613.7581 94763.1031 78597.8604 81245.5529 186520.804 225352717 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 56833.6876 26310.4973 38025.2507 39889.1107 23818.3479 37449.4319 57532.189 33147.4356 34587.6242 28693.9604 712335.1557 53245.5569 46515.3438 42191.5054 23351.8597 23351.8597 21280.7096 52896.3673 25109.9612 60374.7122 68786.3993 40963.2232 20962.7982 22345.262 38440.4447 27116.3433 73232.4309 12369.3368 50008.1953 21371.0667 27214.6914 110730.8071 25409.9321 35030.9208 227467210 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 319568.9275 7365.5456 7676.5726 18891.0795 59013.26 4075.2323 5769.1061 7642.4442 8199.0662 5352.0684 5352.0684 8660.1944 11377.5938 6735.0525 127311.1892 2862.5614 8536.947 29389.677 3222.6135 21198.0179 17424.0726 17753.3535 4241.0091 8219.8558 15657.8198 32154.198 189496187 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 10321.9052 5555.5206 309437.1448 3088.846 4827.137 3714.6521 3637.3553 4581.5067 4465.8722 2850.0247 2850.0247 2545.7938 7779.3782 4347.1563 11326.2641 6152.1934 25983.8118 2425.4266 12113.4909 10138.4199 2989.22 51012.2239 21452.2444 27945.6207 2442.5601 3556.5857 3261.5975 5266.5649 28295.4312 335881720 cysI Sulfur Other NA Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 18663.3456 9348.9311 6842.392 8954.787 7900.6495 10179.3206 6437.0505 6852.269 262956.8039 11788.1515 12926.0182 6415.7208 3721.59605 3721.59605 7760.49 11322.10985 12300.1897 15584.928 17910.0984 17246.3654 6075.412 5967.484 14277.4713 4618.21895 25120.0077 10963.6645 16876.4119 6971.9889 56490.1591 10574.1766 34190.2343 194310701 dsra Sulfur sulfite reduction NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 23080.1598 10915.1657 16681.8223 34473.4081 240401.911 7147.5605 68855.2341 33628.2373 11902.1343 28201.2407 51214.6546 19769.1745 480255.2676 35338.8397 36307.869 23973.6443 25196.2066 25196.2066 43116.2831 34554.8586 26486.6823 20970.4799 48244.9898 34575.2276 11921.5151 15320.9427 51564.6253 15954.6919 64959.9094 101064.1728 60864.7588 20239.0395 163627.7731 37747.0909 32985.6616 543727.6638 60476318 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9945.7142 14538.1824 7473.4895 7189.5217 7868.2303 9415.583 5513.6971 16443.3732 15640.5157 32793.1746 528327.1599 808435.8093 17566.4554 6029.4514 17587.4167 17587.4167 9416.3426 13770.8795 17134.6642 18081.2764 47715.9374 25640.1737 5490.3305 9797.9739 18192.142 11090.6842 106381.2842 17868.918 13518.2883 6666.573 8736.7273 9114.6957 8913.9504 72606.3529 345012938 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 6166.8924 611847.3106 43664.5319 5293.4055 2535.0734 5011.9262 18797.4485 4041.7752 76401.2894 6337.9291 3738.2689 6207.7387 4753.5737 4753.5737 5884.6663 8087.6671 4812.8698 5745.8572 7968.7894 12586.7655 17864.4907 2550.1684 7761.1927 18314.1383 5824.1279 3830.2797 3625.515 2098.1495 7026.5592 77969155 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8902.1761 79524.2026 5100.7524 9843.6861 3624.615 4897.9843 11253.0874 4410.3661 114137.782 5842.9028 4808.7758 3979.037 2398.1396 2398.1396 4325.7056 9223.1836 8514.0824 9228.7692 7366.202 15587.1842 4128.08 5165.8767 9431.8317 3712.4461 21614.2617 10683.075 11262.5872 3761.3248 4208.4177 6075.1072 4277.7697 10534.0553 340778622 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 11092.6134 12354.663 646710.6321 24796.0032 1973714.0211 5975.3003 7991.1428 5271.1231 9041.2766 31057.1626 6929.3614 523735.2907 25981.0904 13849.4003 14420.1608 9089.1596 9089.1596 7844.1626 18742.6216 11564.1251 7686.1744 8549.0394 19704.3909 101123.0276 16516.9746 55178.2917 6919.3772 28689.2755 18185.8361 23369.47 8485.3997 8187.9545 11247.5091 5407.0605 11987.6994 6561503 aps_apra Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11184.2068 35096.9934 8363.9903 16811.119 6196.4803 4169.1799 43444.6022 9518.4943 9787.6332 104500.7104 8351.2894 6284.3677 5456.984 8670.118 8670.118 4588.6499 34271.9734 12210.64 8444.0195 13026.5432 8718.6062 5563.9913 14648.1375 8202.1734 5400.1287 33771.3887 13732.1104 9966.5406 19489.0885 10507.9049 10189.8447 8798.9195 13536.8701 219950107 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 6549.6201 2692.9076 6112.9954 8184.952 12636.241 3670.2984 76256.7951 4981.2346 2390.9071 2390.9071 3335.2478 6647.1736 7103.7577 8833.8038 4164.7862 5873.3396 3484.5547 42842.2339 6824.1716 6154.3116 4842.7642 4988.0637 6555.8371 4900.5565 5938.3419 334702901 amyA Carbon Cycling Carbon degradation Starch Aeromonas caviae Ae398 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 42765.3281 128243.2333 6859.6598 10873.4275 323413.1268 2672.2364 3320.5129 6138.5899 18962.7314 147678.1466 5480.8418 7345.9824 4077.0899 4077.0899 6034.722 36338.1411 7036.2307 102777.6938 49707.7632 6343.9852 43038.2674 6119.7727 27949.9392 11732.8459 13751.9062 5282.1644 11665.6064 3906.8344 6911.8443 9258.4321 5412.1546 13054.4211 219858278 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 21231.3925 7861.1571 11817.4669 6264.4216 11672.9771 2512.7396 12804.445 10020.1371 5635.543 123508.8921 13485.8227 14981.943 30459.6373 8500.7713 8500.7713 4619.7476 16242.4467 10293.2171 11298.1583 20937.2197 5922.1408 9343.8306 9519.1207 11433.0053 8308.0693 27053.338 22662.3775 20474.7505 8694.0881 11091.5382 8600.4689 4070.6513 9455.8008 344039865 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 6398.4365 10668.5233 11467.5405 17193.0312 20963.7547 3065.0612 4435.5737 2531.1443 4988.9079 6312.9366 4418.4658 116575.6163 8136.964 8456.6985 7430.9553 7415.5598 7415.5598 4285.2146 10987.9305 6630.6725 4245.486 4571.3776 11005.8193 3424.7039 4558.4277 11952.3808 2993.646 15853.8826 6521.9059 9932.0625 4221.115 5830.7655 4633.4017 3277.2539 7279.2955 325290931 nifh Nitrogen Nitrogen fixation NA Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 138871.9042 16814.7972 16044.1507 25779.4095 8531.3923 28429.2938 25722.4798 23210.0061 56717.0059 74587.9165 35476.2107 899487.8208 53323.4979 44390.9092 37154.5245 38766.7735 38766.7735 50197.5111 41042.0466 24725.9875 69971.0059 70768.0876 37799.4549 61526.2727 36175.8238 29365.9395 14550.7278 18071.777 65316.8578 46852.1312 17244.6398 26920.515 32715.083 21095.6956 24616.3888 375076695 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 30524.9007 15063.8689 6269.3122 13833.8078 10687.9919 12914.2366 3978.3836 9762.2812 22189.1817 9009.9886 282242.1587 14806.0912 15444.5118 33448.9999 9411.8069 9411.8069 8300.9492 16710.1314 13833.0453 25057.101 745476.2724 14705.9777 9091.52 8053.1997 18774.8723 16362.9804 21623.685 14323.5357 14809.3136 6842.3231 5228.7684 11639.143 7489.0326 40613.5816 406718163 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 33427.2316 2588.3992 4631.7696 3700.1251 4033.6598 79279.1539 5503.8595 2238.9323 2238.9323 3630.6295 7162.368 4511.4282 4890.3303 4955.9525 3720.5484 2911.095 7300.629 2817.4028 12839.0764 5335.1179 7472.9397 3915.4622 3587.0642 4652.8058 2574.8461 6530.8065 1781160 chrr Metal Homeostasis Chromium Detoxification Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 11180.5193 5494.7538 5570.9577 14593.2782 5479.2494 8075.7161 9505.7237 5732.3442 12486.7317 12532.2904 6072.7419 439877.6243 12505.8745 12815.0537 5651.4019 12771.4972 12771.4972 8641.279 27771.1893 12095.5212 10376.7943 11180.4731 10456.9454 6523.5578 7672.3732 16198.6242 14742.1301 26151.9603 10982.0572 15771.6676 8559.896 7899.303 10692.604 7909.8203 14462.5869 67900452 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 14455.2808 6615.3415 13686.6314 8597.3452 5522.6972 7101.341 2805.7368 36277.8652 9000.16925 10667.4259 149871.42005 9621.2719 10164.3643 40170.3153 18297.785 18297.785 17256.1426 44450.8841 6572.8183 9922.11055 4942.768 9125.0435 7908.6683 23043.0386 35116.675 11558.79 11236.93415 3061.07695 7357.5648 9172.4743 11631.0642 6271.4377 374998291 ben_bcla virulence NA NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 15089.6179 4613.2417 40641.4457 8400.2453 78985.7189 2865.5385 270096.7358 45995.2418 5784.2939 5784.2939 3488.4624 6427.2259 7541.6875 7905.9641 8495.2058 6752.1854 4308.2915 3850.3948 26278774 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18548.8378 7288.6354 57967.1549 9011.046 13722.6436 7599.5532 10760.3075 99468.3094 24250.8754 378777.7662 73425.2555 147493.2673 72634.6029 137091.5027 137091.5027 9683.9628 30741.3554 21749.3964 19477.537 22460.4777 31858.3096 11641.7043 91429.6801 20019.1725 14897.7048 96255.0193 13955.3774 31271.8511 7572.6037 21544.1674 23885.1481 62255.8021 14099.6072 323470932 one_ring_12diox Organic Remediation Aromatics Other aromatics Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 38398.0599 28302.0635 4696.8983 35425.2946 48326.9036 52057.1137 6081.8372 44768.7564 200233.8934 7150.8798 10100.9646 8487.5788 235078.3133 235078.3133 6229.4564 13746.6982 8728.222 11674.9004 10937.9881 5869.2882 6887.2662 16578.8102 5991.9446 16632.979 13348.6933 13139.5696 3257.0846 9552.0994 40684.276 5230.8443 14623.0264 83596378 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 5432.3971 2783164.0959 640292.4752 5160.2873 5714.3221 7244.9813 4642.3053 18042.0686 3270.8268 16972.7077 3814.2931 62394.7996 393719774 amyA Carbon Cycling Carbon degradation Starch Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 9995.0933 14974.6277 19537.931 5932.2923 16876.6493 8704.8952 7715.9318 12986.5731 123595.0168 4029.3624 5551.3417 16203.0016 7676.2149 7676.2149 6367.8022 11187.6168 7623.4754 5623.5393 5353.4504 6107.5911 33760.5928 8134.4334 6071.8534 14789.2994 18687.5715 5863.0539 8342.9718 7599.3938 11152.0786 16899.2052 3696.4492 11937.6163 51856883 narb Nitrogen Assimilatory N reduction NA Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 52393.4811 14984.1267 19976.8513 28285.4941 45926.09 9852.9828 41097.182 25138.3719 133493.4971 34169.6459 77010.516 46374.6788 564396.5352 179778.5723 30471.2707 28349.0959 116351.4775 116351.4775 38677.3516 67118.3484 35915.3023 48409.8038 211017.43 42290.406 271101.833 26917.6707 37847.4527 36625.1474 73147.5549 53511.0959 51088.7408 26226.2536 35875.5914 38940.4273 26224.8798 52550.4446 156062912 lactase_fungi Carbon Cycling Carbon degradation Lactose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 3499.1168 4001.8083 105329.1252 10840.6251 2330.3097 2330.3097 3234.0916 7068.6467 5293.9405 5884.8114 21552.8875 2699.2013 4348.658 14723.3335 8049.0941 4233.5347 2118.3101 4432.3772 282849322 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Veillonella parvula ATCC 17745 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 21092.6471 3700.0082 3373.4041 31915.6941 6440.902 14659.5109 15546.2201 25144.835 5269.128 13972.3487 18834.918 6825.2106 22363.7901 1742.8042 10241.6552 6822.7582 9855.9861 388430514 ppx Phosphorus Polyphosphate degradation NA Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 6265.2933 12844.7588 4958.1995 10768.8183 22087.5577 4501.1829 5269.9487 11756.0768 9054.6881 67607.2304 20936.4216 5221.4291 6349.746 85747.0789 85747.0789 12742.385 5907.8341 4046.342 13175.97 5945.8238 9019.4585 3458.541 835336.5434 5144.8329 11724.8544 6188.5481 7838.6676 6045.4616 4157.5217 5248.9454 4054.8901 8206.9751 109290298 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4528.9615 2796.9044 6319.3361 10630.6975 256389660 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 23239.1096 33136.1022 21170.7019 12930.7482 10525.0391 18401.2671 15896.5037 13121.6656 11823.4861 16386.8327 231465.6705 14169.7363 63574.1419 25921.7408 14026.4867 14026.4867 10859.0547 38970.6646 17764.3871 11476.2708 40143.2029 5463.3825 6457.0757 12697.949 26191.0739 11651.9498 30202.0992 36476.2132 14499.4956 15138.3554 11654.6917 12722.9134 9897.158 126871.1073 149144178 nifh Nitrogen Nitrogen fixation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7328.8983 10258.0779 6393.1491 7701.9245 62367.4154 4123.0975 3767.2781 3829.3486 6585.2709 3905.2396 3905.2396 2879.2995 5647.5732 7077.9272 2118.9069 6788.5341 7149.5423 7854.9569 5321.6503 74038454 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9275.4971 6825.3314 92579.936 2794.69 3248.1045 17069.2722 4073.7854 1984873.603 4221.7785 12900.7838 12900.7838 2587.0983 11938.5023 25144.8052 10121.3138 3194.2453 10734.8686 2203.9157 11784.1231 13949.2805 21606.1105 28934.6613 5968.704 8961.0193 23919.1071 144898039 nosz Nitrogen Denitrification NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 5025.7186 4313.4397 3832.5273 3317.0055 4256.5072 5262.6375 2413.8582 109532.2881 3934.5203 4095.1067 7256.9391 2409.4613 2409.4613 3500.1855 7273.739 5523.9218 7328.5025 7233.0731 7801.3013 2388.1106 4313.447 7787.2127 4903.7581 8908.0208 5058.6115 7076.2082 4229.2546 3328.8785 4164.9531 3533.6932 7127.8663 363416202 catb Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 23839.3638 10956.8305 5451.3241 12453.7284 6330.3228 5929.6486 20501.1608 3786.9066 7160.9333 4711.2281 8267.2544 9239.9009 28055.7044 6530.4641 6530.4641 3236.3104 11253.5915 18382.2999 5507.0343 10302.9472 8189.7164 3820.391 5982.9414 14356.7164 5370.4458 13915.6191 13787.9802 13936.648 4888.4047 6945.8718 6767.1445 3453.5669 91682484 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10832.5089 34074.5356 18593.8848 17601.1709 9688.6776 13106.4988 5915.3266 11038.4752 19771.5199 8589.9822 221604.9461 15499.9424 10882.4885 13313.4306 13497.5616 13497.5616 7189.3209 19430.1635 13286.2624 15690.1733 15541.2078 10788.6088 6322.9141 5368.7207 16829.6808 11582.1775 21772.9496 25007.4316 24111.8136 6585.9504 9453.5445 10025.8807 22432.5626 30389.0458 158138747 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4473.0641 3629.7866 3683.1687 98898.36 7279.594 7279.594 6723.5543 10755.6767 8149.7696 5453.9149 7443.0301 1943.2464 6783.1727 2328.5839 9864.5713 357977475 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4985.6638 12755.6605 10956.2295 2968.6124 27574.1565 4062.0548 5388.6004 10194.2727 2398.9637 89038.6252 4795.67 4374.1362 3150.6653 3150.6653 3666.3327 8697.0537 6929.382 5711.6775 3908.5845 2637.3944 3830.2142 7687.9106 3813.7398 10938.999 4764.1426 7749.9137 3095.8446 3795.0293 5145.0195 2863.6739 6675.5515 387160380 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens A506 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4990.3052 4305.1142 5870.1602 4926.6044 4248.6574 11102.4822 6747.4538 380732340 chitinase Carbon Cycling Carbon degradation Chitin Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 6870.0169 13574.0712 3374.6126 13012.9191 4997.4894 7182.5667 7577.5813 13418.4641 13418.4641 18263.6467 5439.3479 14684.1046 4958.4528 3425.3091 6453.8412 9488.3855 6002.8229 12440.7088 3807.388 93966.7254 9908.6225 4246.2571 46299.4219 8743.7517 332700220 cda Carbon Cycling Carbon degradation Starch Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 5973.4773 6297.8457 8985.0539 2511.7898 2818.2989 7256.3288 5187.7824 88329.0042 3055.7052 3055.7052 6790.635 4483.1098 8193.1369 8218.8038 25979.7794 4224.2129 5301.0834 9479.199 6085.0254 7340.6767 2078.2975 6751.0844 4178.5402 2900.2301 89054191 tktA Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 4855.6983 15136.7368 42580.4787 9653.2634 5519.1033 7724.4 16489.4223 10192.7656 22420.8397 105932.4446 12154.2589 9550.5125 8169.4733 14460.9664 14460.9664 3287.0642 12815.9716 7061.2708 20706.4418 4317.0545 31036.3223 3624.2071 9092.4645 58709.6126 4539.7564 20485.8386 22195.2393 22177.276 4046.9742 17149.1603 13690.776 2204.8178 116694915 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 22781.7525 14562.9701 6473.5034 30198.1203 7739.9146 26127.8905 9270.308 51052.9588 11181.0274 23976.6104 26762.6647 315290.1999 19487.6478 27895.3077 39571.937 21636.6737 21636.6737 10240.3257 29347.8943 14120.5213 16057.0803 25418.794 12037.9295 65768.5847 12999.9523 19956.6768 32497.2735 33131.1435 22084.7663 29648.8075 34872.2549 39450.3704 42615.7388 26666.7855 16903.3823 300112202 ara Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 15599.9595 3286.6492 3225.5113 2517.4956 4020.5564 5059.6068 5059.6068 6982.7053 3736.3099 30548.1148 4142.4808 4510.0666 3253.9179 3502.5206 3482.1354 3430.1465 169150480 mer Metal Homeostasis Mercury Detoxification Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 21923.9167 6652.3374 11599.6059 4761.0197 8273.9578 13007.7649 8549.7333 27607.684 40407.9572 20353.5745 218516.5052 9410.6697 11242.68 17453.6521 13301.8282 13301.8282 10480.1219 32689.6951 13443.5041 8910.9195 10839.7219 17661.046 9072.5033 9097.2918 12968.2683 9534.0726 35510.8037 29878.3715 17048.3113 10073.0113 16156.0176 23699.6018 8980.8186 18685.2382 118469689 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 11341.6732 48894.6916 53996.5078 2639.3948 5327.1563 16312.4532 5038.528 77330.125 5988.7385 17233.3098 4374.3947 4538.5141 4538.5141 4909.4938 14330.224 7136.2708 5704.7856 47731.9535 10434.2825 2790.73 4082.89 11096.5491 3551.9719 18287.2896 7002.8061 10261.4498 5788.1161 5716.2555 10433.3142 5574.7739 6535.6325 196192474 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4699.2575 3629.4464 2288.9142 4318.7716 5644.4067 2242.6223 91562.1916 4972.0391 4648.1578 2095.5159 2095.5159 4341.6553 8925.22 7019.286 8771.5845 10279.307 7505.6795 3248.9717 3704.5019 8871.4637 3189.2302 13901.5891 5523.5877 10138.1518 3265.2814 5785.1956 5511.1274 4653.7727 6833.0476 192764496 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16867.1309 28540.7738 39015.8452 3231.8855 6102.5867 13914.3545 11542.1389 15585.421 13737.3317 244519.4447 13005.464 8783.451 7872.5312 16903.3017 16903.3017 4263.3334 25192.6611 4851.0048 12457.7198 4029.8259 13389.0653 2754.217 5295.9577 10920.4878 3415.4792 10584.9423 15932.8333 25485.9501 4558.027 8500.202 10350.9598 2474.6572 13524.8765 32308892 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas sp. BK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 135795.2662 17607.9303 10339.0767 22309.2064 5505.5936 23165.8588 34151.2575 30275.6027 18837.5894 47491.4921 47171.1233 960401.0808 27610.4074 34637.8503 67204.8478 44812.0325 44812.0325 39402.2005 72872.9953 27370.7097 42438.9597 75221.1784 62443.072 28748.4133 33033.5187 40160.491 37672.4025 165475.173 46099.1593 59304.6451 19387.7611 39988.3157 46163.9168 28767.132 38476.3321 291612867 glucoamylase Carbon Cycling Carbon degradation Starch Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 9512.0766 21416.1853 5911.4356 36170.4838 9008.1837 9999.9332 6790.5558 108141.8999 9254.0539 5058.379 392411.6143 25151.8102 7947.1954 9442.5369 8192.2883 8192.2883 112670.3725 14339.7041 27067.4582 4806.6075 8829.5369 7747.9025 5510.9331 4113.8261 28954.1883 5188.9606 23232.5572 9054.6725 14531.7987 3401.2336 9161.1635 9369.8299 87308.6915 14587.4095 39648529 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8704.3316 13644.4119 5382.4756 14932.4311 7434.4561 6446.8116 33085.8484 2678.3261 13087.2633 6969.1819 4243.6668 164122.5301 9146.3997 9180.1184 29229.9193 3256.5879 3256.5879 5494.426 12371.2231 7212.0717 4048.4306 10141.1714 4499.9255 4164.7225 11249.1487 9846.3757 6247.835 21248.4784 13363.7983 10785.3576 8801.5178 29924.5811 10691.0146 5169.9238 24475.2808 84510386 urec Nitrogen Ammonification NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 21328.2608 5705.3804 83137.469 6907.299 10571.98 5628.9621 5486.1731 7433.3293 86939.9084 14262.2843 7122.4958 10929.6902 8700.7853 8700.7853 3784.0974 9936.3948 10399.8556 6245.4944 5458.554 3583.4496 4464.508 11575.0687 4476.1218 13221.1293 10246.5896 8977.0822 5922.2595 5509.9395 3885.3455 8907.3148 8984.0028 308226331 phn Organic Remediation Herbicides related compound NA Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 22894.1735 9808.1202 11934.1332 21645.2101 5680.4798 12015.3319 12336.2983 7299.0528 14507.2914 17579.4895 9707.1551 353817.5858 16500.7171 21664.2831 15127.414 10702.9617 10702.9617 11302.0805 36329.9118 16461.2258 37437.636 79637.1775 122112.3572 41247.4307 11190.4616 21028.1162 25346.9179 49068.709 17871.8871 19944.7847 9152.2221 13126.0636 21880.1577 8466.4221 94033.3974 91790992 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 11348.1954 42877.5187 6547.3444 16710.2834 2575.6986 7807.996 5224.5574 9554.9559 4702.9953 5316.6805 35680.1269 26058.1368 26058.1368 5310.9443 28338.9137 5653.7154 13086.5258 14098.5155 2879.3622 12366.5901 14607.6136 14374.5761 17850.4893 12836.9407 12105.3831 5803.0868 6383.6703 15082.4257 4093.629 4883.7738 114739536 fccab Sulfur Sulfide Oxidation NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 18826.9487 11518.9388 8357.9886 6397.3587 9916.8556 6760.9147 6360.5092 4255.2979 11265.9953 11073.6147 21568.934 175050.2879 10782.8603 16684.7404 18590.2992 9964.7397 9964.7397 4985.6264 55847.0005 11487.1396 8812.7107 24943.1628 9541.0691 5102.5852 6390.6037 11567.5726 5701.2777 23470.4646 18491.1342 16869.5515 14715.7313 17657.9855 12191.7819 7802.9043 10961.3879 21227351 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 17044.5718 44657.287 5056.0228 9670.5354 7913.4353 7529.7738 7617.7097 2602.1205 8710.6287 21657.2315 5643.0968 178655.4095 13413.3482 11343.7184 8063.946 6193.5581 6193.5581 5430.608 16881.7496 10104.5551 8744.7027 21145.1805 9517.1764 7389.2914 6069.0404 15274.12 4729.9681 21777.1081 8262.8914 15404.6826 5674.263 8791.4265 12933.6496 6657.8755 15547.9706 192764460 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7130.9443 5768.0592 10499.4302 55202.0625 13594.5222 4261.9356 8299.5713 6315.0614 10991.8183 6934.7069 289969.1719 11834.7162 13661.0576 14549.8668 9210.4324 9210.4324 4664.0298 29284.0138 18906.0185 4229.553 7567.4215 8723.16 7152.5785 7772.502 28290.1187 6265.6525 33798.5 22028.5339 25589.7345 10347.9095 10403.693 6711.0206 6462.5103 9878.5491 118618327 atzb Organic Remediation Herbicides related compound NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 27755.0062 28519.3968 22076.9642 11716.2655 17474.968 8514.3868 22959.5748 13135.2067 7127.4613 13163.8021 20793.6592 25729.9372 583253.2257 24457.4081 33154.6315 18550.7128 18545.3215 18545.3215 11501.7911 51843.2249 23465.4522 19805.5316 27333.7983 98977.4319 16024.4895 23907.6314 32889.0419 19060.256 54603.6818 20272.3358 25919.4555 14640.7424 33584.8076 17451.9795 12609.9669 12698.0615 349595821 rgh Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. subtilis RO-NN-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 6255.4829 2718.2484 2293.3182 2573.3169 3609.2825 4726.4774 5107.5372 6577.4359 3153.4056 9330.9979 5281.3431 4791.6448 2826.324 6699.8971 2519.4199 11433.6744 5285.8811 1968.1448 3198.3021 4176.5837 4504.0827 297146693 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 64865.9061 19133.3895 184405.8699 58058.4874 17143.7264 33406.1873 182415.1326 17366.6335 31349.813 26022.9656 22158.4862 984382.5103 51839.9535 38111.3822 44870.7217 38277.6413 38277.6413 32186.8791 48523.9873 31297.2692 121120.665 40845.4496 49306.2123 42801.2065 19438.2356 121771.5562 136808.6053 63719.6917 107799.7265 45961.2402 28803.4511 21642.7304 23241.8029 36949.7877 43861.5532 311279861 mer Metal Homeostasis Mercury Detoxification Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 51764.1298 29923.8634 325209.6154 81666.6677 24090.6217 24114.5329 39379.1362 21325.4114 42570.485 42141.4136 508182.977 142941.9352 16955.0079 94990.4628 94063.5394 94063.5394 14405.6664 39941.1854 17576.3866 175073.5063 32699.3641 18145.0566 35632.3572 32583.9868 32928.386 56829.4203 69923.402 23540.7585 63455.7458 14019.4054 28072.0162 56308.461 19221.2212 19361.0289 299006962 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Chromerida sp. RM11 superkingdom:Eukaryota;phylum:Chromerida; 8037.2684 76366.362 23803.3148 7096.5345 22436.3105 5549.5674 6522.1286 6882.6928 6013.2917 5632.741 9083.8361 4890.0866 124270.8461 11406.5313 12511.817 6417.9084 6845.2138 6845.2138 7436.9455 20324.3373 7353.6842 8767.0801 11090.199 11437.0168 4158.5764 5553.9512 14048.2887 19698.9384 26026.4808 12092.8556 13924.2921 5639.7533 6706.6551 7548.1939 10376.1371 6679.2609 359823057 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 54210.1667 19380.6715 6740.8601 23749.6554 8605.0086 10170.3646 158461.6858 10439.7758 14824.2421 22052.068 10228.0228 331559.1333 16067.4923 30340.5421 96116.4937 13790.2796 13790.2796 9799.2143 32979.6441 14490.4833 16473.6756 28059.5031 16231.0684 10076.2157 12601.7439 18577.724 8569.7942 40364.1507 51607.5448 30878.7506 11722.9 15150.6219 10126.2061 9972.7867 26073.0689 26278782 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 78907.0034 5629.9924 17410.2987 5107.1411 43044.8425 9971.9378 7836.9455 16586.9469 18234.7624 8125.3303 146581.5181 7404.8336 7891.8404 16607.8161 10542.3405 10542.3405 5636.4552 30118.3333 10912.3008 73419.3965 18829.2663 5404.123 11128.4581 8548.0819 9100.6926 9310.2756 28448.3454 14243.7816 22019.6217 4903.2648 10978.2103 15430.6455 7790.46 5977.9531 365848040 cysJ Sulfur Reduction NA Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 78145.7178 8489.0188 8590.7878 16639.5857 8420.6535 25380.228 81995.8414 31245.6351 54877.5962 40615.2898 63264.162 537940.6688 84510.7991 244124.0774 180654.9204 57547.0242 57547.0242 25464.0996 91491.5287 61209.1323 30924.6119 149268.9225 43458.9954 27313.7463 71338.3686 107531.1292 65997.1628 69230.6582 57340.7505 86685.5634 59072.8058 32696.1242 64361.478 45274.642 203798.7921 353544174 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 11657.2207 113328.9471 11181.9637 44191.335 13869.3219 17879.8087 9998.5596 5276.4309 13622.0771 18499.6608 30492.6544 200467.9508 53601.9457 15128.967 35214.5388 13093.8731 13093.8731 500869.1557 21143.5748 17195.4478 6173.1314 62660.1517 10756.4379 18042.8248 32724.9517 23699.3725 5289.4286 25096.0303 163936.2963 21204.1003 8571.1829 17313.2626 432083.1308 16381.6844 11587.8517 119398955 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 10956.962 7173.8608 7055.3644 3168.663 5171.1268 3458.05 17694.21 11269.6099 4595.123 157294.1954 9650.356 10926.6252 11307.7587 3913.5276 3913.5276 6341.8346 13738.6866 10188.1042 8842.8693 10649.6169 9051.2616 6405.9134 5630.5962 11202.5903 4639.0698 27447.2984 8060.8833 13511.5855 6635.4808 7510.9267 8630.4091 5824.0703 14904.503 385278729 limeh Carbon Cycling Carbon degradation Terpenes gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6886.411 2642.5701 4180.6366 3776.0103 59976.326 8556.5407 2142.637 2142.637 12832.9683 5447.041 12807.842 4238.2138 3948.4761 4070.3588 2465.2557 6865.2159 11770.1654 8190.5519 6428.3475 2583.4643 3961.3164 3178.8351 3202.0783 7183.7496 259017119 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 9844.2677 26000.1359 27505.7803 11854.9185 4894.9504 10896.2681 20296.8507 7247.5748 5607.9137 171611.8269 19473.0751 13522.3362 28601.6905 7738.6292 7738.6292 9215.9113 21360.2782 13216.227 5467.7643 8135.5661 2192.4534 5582.4459 18999.4824 3999.117 30806.4657 18026.5265 16772.8608 5529.3398 7090.745 5891.4242 2652.1817 299524648 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 21190.4457 9385.6225 13653.0459 26768.6658 5853.0535 13568.5725 21919.575 14634.3388 16733.0974 198712.4791 16256.6659 419835.7035 69802.5475 29697.5851 33061.7625 15671.2723 15671.2723 11096.6389 39985.3421 17872.8491 30741.2171 29082.5823 16786.0314 13221.1343 17352.7676 25327.5286 12441.0699 61039.108 25974.2649 34525.9459 18852.6421 20924.0866 25847.0407 16714.867 20993.4404 91688603 nbzc Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 148718.9814 19339.9816 38393.697 27340.9548 23797.022 11390.3673 50832.9327 70832.425 91853.7506 32249.3091 54430.3302 81979.524 902884.4147 50933.3573 45243.4167 375689.061 95109.7492 95109.7492 216785.454 81096.7221 153943.4874 46391.0807 58482.1864 121008.0367 32325.9765 48884.3678 44471.2162 64762.3675 193457.1556 348239.3767 64855.5789 43150.6118 57993.8639 71619.9577 43380.2515 60705.3479 269219233 ppx Phosphorus Polyphosphate degradation NA Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 6047.7725 4436.7628 18429.8328 7845.3717 3883.2409 8035.2724 3225.7147 167602.8357 5295.2362 5307.2241 9034.4472 3170.2599 3170.2599 12242.795 6058.696 4347.718 8979.1345 8571.4956 6984.9225 14501.4024 8624.5226 7271.9926 6040.2542 4826.8176 10843.8987 3606.706 5094.1587 328927700 dsra Sulfur sulfite reduction NA Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 8377.1955 7385.9486 3380.5941 4199.6387 4389.7982 5631.5519 10221.7307 4259.7324 123746.71 6512.5581 13130.7351 4548.3188 4548.3188 9640.4089 17629.8861 7379.8922 12133.9579 17300.3238 10738.6252 7916.022 8002.5693 14019.8336 4516.1883 21027.8899 25632.3157 12005.1094 5305.2686 7219.7945 10752.0368 6804.1818 24209.5849 212530852 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10520.4684 238371.4393 10259.6744 4646.9297 6939.0579 2514.7631 7178.973 5119.0125 7960.1843 17000.6062 15530.6071 143270.308 8829.0923 13401.8925 5459.6698 17396.3831 17396.3831 8573.3775 227389.4341 10333.0029 14039.4774 235137.6557 8187.6218 7823.9867 7476.6474 30927.226 9153.4116 31314.9343 16179.6958 16142.2563 9577.8808 12626.4741 15330.4379 11384.2761 9357.5508 116611564 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 23934.9066 14493.6482 3322.7299 4093.2068 3977.7729 9673.2555 9428.0496 3891.5957 5575.1981 5575.1981 8792.9219 4035.6782 5168.5701 3257.9897 3409.0787 5802.9782 2624.6322 9440.7596 6407.2547 2160.7874 14429.6905 3937.2292 5019.3193 18660.2989 55469835 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 50397.663 50949.6371 14016.3079 12963.2023 19754.247 27026.1423 20369.4372 19525.0372 24359.5739 35191.5725 273322.1095 30211.6537 31583.8388 24147.0694 31438.9094 31438.9094 144360.6022 76917.7986 24492.4641 26552.3802 162667.2646 28708.828 16522.8975 16609.6594 25879.079 20633.0896 58147.4013 31433.1777 27642.471 12719.086 34418.3738 25249.9006 15242.2788 42593.8493 45990 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 104172.086 285011.0545 44784.7988 46487.8774 54546.556 50676.7537 34141.0524 41485.4499 91653.0356 119021.3771 54449.6058 50901.2699 1067169.3806 49689.0268 82898.3873 50258.8993 94583.8319 94583.8319 31626.9402 83042.7661 78564.2429 87263.8305 180139.9839 72420.8568 56969.2509 40360.142 57584.0187 38891.7473 142952.269 37728.7666 73504.2111 65448.8264 51003.9346 52829.5471 105078.9729 76959.3956 148843194 linb Organic Remediation Pesticides related compound NA Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 11786.3832 12445.6976 7738.5806 16215.8168 24762.4086 4506.0803 13218.0098 10205.8495 5281.0976 16077.807 13458.4785 7973.9514 322570.1426 15145.7732 19496.2962 8168.7348 7071.8159 7071.8159 10873.9516 19340.6698 13296.98 11667.5982 13421.2271 19226.6386 7461.7669 4686.3408 18205.2966 7261.6361 32208.8591 7572.9964 18266.6339 6258.8882 10942.9162 9679.5362 6149.9673 22448.0076 312140108 amyA Carbon Cycling Carbon degradation Starch Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 49740.5775 12495.4144 4704.204 8271.4028 4159.5174 2629.0962 5039.6333 5846.4704 3784.6498 112781.2651 5630.143 18380.0947 10134.273 55940.6651 55940.6651 10269.4436 21645.0332 7539.3304 6124.1278 5779.3482 8682.9624 4225.0073 4213.9662 12489.4724 46967.9956 15915.117 13668.1082 12606.4178 217790.423 6456.4355 5322.9916 3203.988 5210.0348 338775267 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brevibacillus laterosporus LMG 15441 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 27300.4655 43797.2389 5889.2442 5939.2344 9100.1226 12194.164 26107.6498 9902.6575 14740.656 17066.2135 229947.078 50255.5779 11787.4217 161818.8081 14930.2005 14930.2005 10854.3672 32469.1676 17320.5572 14956.409 15707.3356 10241.8931 13443.066 44977.6009 19600.0629 15554.9836 56763.1433 27452.1266 20266.1216 12032.5844 16045.624 22427.121 8032.9853 19773.9191 220708117 xylg Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9177.2858 3324.9722 4741.6226 3155.8377 9731.545 4613.2059 5442.8628 5442.8628 9712.5942 4691.3164 7773.3083 2889.6812 6905.5392 6719.8921 5370.4718 17024.9526 4709.1232 10092.3365 3002.9241 4328.5449 5047.5794 2473.2802 375108813 catb Organic Remediation Aromatics BTEX and related aromatics Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 28080.551 19349.2074 9807.8025 6375.601 14393.8017 20679.7553 8992.4397 13540.2117 162090.8773 6097.3721 9780.3303 16908.9297 3548.1199 3548.1199 6351.0651 25021.3979 7469.4334 13688.1667 22093.9062 10616.393 3780.5716 7551.4355 6877.8678 9098.6898 40274.7024 10066.2663 50111.6137 6662.2711 10964.3124 8638.2306 3933.8245 9012.1129 119497739 glucoamylase Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4371.5187 8455.8845 1778.2898 3454.3582 2466.7076 11109.2693 6937.8341 3848.2558 16380.7059 11023.2381 4229.6486 7719.282 209518590 phn Organic Remediation Herbicides related compound NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 93598.1357 64601.2169 41443.9754 9982.4143 3895.0227 6212.5614 3710.8508 73527.3513 16477.7085 24512.8946 221048.2403 12726.3724 12537.5239 12748.2278 16801.1784 16801.1784 9646.2872 15277.0945 13188.1362 5141.4321 6108.0445 14745.0035 5782.3226 10461.8816 18214.9144 7795.2154 23889.9041 19925.0627 19053.1847 8760.0339 9062.2994 10516.5538 9375.4201 6704.543 218658454 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 14914.6255 277216.6767 27163.8804 84560.5163 30732.601 9070.796 38768.7191 3290.186 12403.219 70535.2861 45729.7105 402648.6805 24030.7478 69405.3744 59304.1019 71552.8665 71552.8665 9773.1213 119610.8703 27448.4935 18816.8771 11851.5102 15961.0305 7908.413 28972.2463 70553.5313 17124.7083 70019.084 48363.0158 65015.5457 17185.0287 27113.6944 16065.5622 9275.438 25219.7237 94471219 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24458.2949 13950.192 24828.673 12740.4189 16341.9164 6494.2629 7425.1086 9869.0541 11688.6271 17509.877 14618.1099 10483.229 628299.9959 13344.7588 59758.7005 30292.3831 10990.046 10990.046 12701.0161 52032.0078 19619.4062 10908.0072 17756.7912 18324.1225 9892.4498 13488.1584 29718.8452 14863.7013 33603.0789 21380.1893 18317.0656 8766.0236 19009.8363 11936.9309 9426.1214 31795.8871 212171398 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. S8-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 7933.6122 14225.0087 10260.8798 14686.6549 11667.3939 15379.3387 13550.7978 13702.5047 10125.6151 28347.1219 12570.5768 221916.5825 14799.66 21927.1724 21325.3349 12742.525 12742.525 8072.9862 51516.9691 16559.3475 17125.5881 28044.3441 15105.9893 18324.8304 10023.0621 18302.8395 18535.7149 59014.7131 12700.2273 15880.8393 12586.0835 12079.6206 9882.0672 11305.5733 15494.6196 148238881 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9228.8705 18243.8993 5075.001 3135.8614 254657.5225 5146.658 44319.5914 62003539 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5402.0253 5541.3292 7677.0427 13081.7365 10972.0957 14091.6696 13784.3284 6849.7025 8653.1999 5662.0178 21415.1388 4845.5851 6055.2131 6055.2131 3587.465 26915.5018 5293.9831 5497.0592 8601.0405 22226.1881 5362.309 5916.3124 6808.2453 6714.4026 14995.0491 6575.235 11267.5831 4350.9982 13122.1561 28655.0783 7468.7813 13279.9506 88798833 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 98051.1113 21351.68 30116.9075 47540.802 40067.8869 8781.8765 42076.7806 86834.5688 46883.2695 41001.1309 50803.4737 42922.581 918398.8464 45247.6714 83173.3593 77864.528 36607.7521 36607.7521 53374.4166 45536.9816 48002.1355 114210.0409 77428.0176 106484.1564 29475.2504 41454.7801 66835.6376 74294.3619 84079.8898 134373.4635 72101.2776 408586.7731 42304.3299 67593.149 46659.8121 85679.0612 271968939 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 23136.4965 5036.1448 3971.8098 12333.4744 4390.2305 55868.5038 3672.3954 3672.3954 2802.8753 6176.0303 4082.3823 7169.1789 5559.751 2727.6521 2318.9903 16642.1477 5036.7559 1911.2053 4029.6859 7148.6554 14742.9613 114321573 arxa Metal Homeostasis Arsenic Detoxification Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 9231.6404 7487.4946 13266.0241 39574.0354 8904.9207 12188.5653 5794.9574 7735.7882 20267.485 24273.143 100130.092 6395.4435 7656.3914 6800.0134 4983.8229 4983.8229 4285.6916 12356.9053 13482.5821 9779.2926 8846.8764 6786.5523 13429.2475 6768.6343 12862.2223 8978.9554 10879.8034 6816.9902 5606.5159 7927.9755 12096.4233 6587.2262 37726819 dsra Sulfur sulfite reduction NA uncultured prokaryote 6037.784 4604.7454 6952.7142 3092.7257 4077.8645 7149.8415 6035 13023.6337 7381.7955 71605.4818 12580.3516 6668.5074 10313.3107 6203.845 6203.845 5046.663 14334.3977 7458.9899 21254.1532 38596.3564 10512.9455 3948.5637 21080.9429 13831.5876 5040.879 17728.4444 17175.5054 46924.0872 8245.9158 30992.2738 5953.8087 3096.0655 12584.2994 302560783 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 95613.5227 16210.4539 46707.2853 35878.6095 8834.4949 15109.1419 27323.3201 21338.2489 12587.685 42094.7877 78526.1556 20787.6852 451924.7121 30746.8291 30615.8661 25245.9264 24144.395 24144.395 32353.673 33384.737 22177.8619 34804.7293 38149.9227 38054.7363 14990.6563 30536.83 26654.4594 21160.889 62102.3892 16376.2422 35270.1036 14107.5912 21803.3718 33507.1683 11363.5914 144610.4477 162449769 endoglucanase Carbon Cycling Carbon degradation Cellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 6659.0009 2970.0026 13337.4309 20057.2116 3041.8158 10407.8966 5457.2489 66296.3449 13298.946 9439.2217 3467.8668 3467.8668 46774.4891 12215.069 6318.3517 15441.3144 6781.7194 3400.754 2833.2667 5950.2294 2698.6058 7402.1444 8936.875 3712.5505 6883.2718 3889.4851 10270.4509 21649.7911 126386919 arylest Organic Remediation Aromatics Other aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 4243.0087 4107.6815 6332.7327 2746.0789 60869.1008 14320.1338 2150.9192 2150.9192 4655.2084 2275.7313 3452.427 4321.2731 262273730 tktA Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 16497.0968 11077.7518 10399.8283 58161.3765 16938.1234 3344.3699 39925.8436 3206.2922 10110.9027 10846.1291 7969.1248 299090.8756 26070.7835 19680.5925 49280.7538 18305.8513 18305.8513 7373.2114 28506.2105 18971.8199 26266.6742 11017.3037 13727.0789 8386.0493 22618.7293 39442.5221 6986.5998 83286.4655 24817.0594 35032.9382 17608.6649 12175.3952 319358.5519 9748.7861 26205.8499 337748674 gdh Nitrogen Ammonification NA Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 24208.9655 21821.3581 7697.2477 4856.5324 8726.4675 12029.2543 14249.0076 12550.8667 145849.3531 12093.3067 11276.57 8742.0214 8963.3723 8963.3723 17840.0918 20647.8283 8126.8835 26783.2944 62645.2261 19098.2687 11152.249 5805.8493 16984.935 7753.3397 33908.7275 37228.8038 18342.0702 5905.1672 12743.5263 8695.4795 8557.5827 17787.2008 302517548 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 49650.9362 15239.5294 25353.1984 35149.5841 24324.032 48127.7242 19169.5882 18034.5447 10844.1193 15381.135 21817.1933 20684.3115 489133.6756 26106.0073 26497.1477 22861.6749 14431.19 14431.19 16922.925 39596.5451 25401.2518 23757.6414 25658.6796 36889.3888 13415.6589 12291.1353 37605.128 11270.9445 47888.7584 27586.5376 32785.4561 95859.2232 17936.2857 14403.3618 13517.9444 33898.8272 118069597 arylest Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 167643.8976 27317.7919 24078.2967 27520.4405 114431.5352 4654.3718 13154.9823 246146.3998 38835.6471 47361.1581 26336.5047 22990.0026 729671.0558 59364.4907 59072.2307 43857.6535 15003.0464 15003.0464 25189.4447 36829.259 30640.6497 49341.3423 131891.5218 119459.486 29704.2872 22003.8312 49598.7139 24140.8525 62216.815 83413.5189 63293.8498 17333.9206 41381.6369 115012.1895 59033.3777 44972.1979 373856467 bphd Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 46331.1307 18254.5035 22715.3277 130523.6239 17786.3411 10031.0832 15964.57 84745.7349 11081.9326 18717.8998 26096.8569 19471.1705 540282.7873 59844.8979 62162.0182 42346.3691 24116.3271 24116.3271 18556.0395 51278.5848 23959.851 23411.3667 32178.0132 43651.1606 16489.5353 26240.5285 37705.1308 15639.5445 66047.2556 22730.2741 40441.9416 14282.6509 18771.7281 29107.0731 11524.8119 45918.9719 177843294 RgaE Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 95536.9273 27804.0491 30868.0121 32283.6701 60577.4665 1797137.678 33380.5214 74706.0458 41457.1312 48616.7828 62356.1196 75225.1187 4289069.4632 96959.2221 69302.3216 112371.2369 56852.1761 56852.1761 39093.2854 71946.787 49725.8179 69419.9731 111438.1148 60627.8396 71799.6165 53645.564 71223.1424 45860.1039 181351.9323 80069.94 97917.2098 35862.9885 74955.9991 67123.5892 57449.6928 299085.2455 347367111 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 11997.4728 14126.2588 6610.7895 4782.6071 7390.8121 29083.8478 8356.3829 29505.8061 135350.2372 21373.4177 11129.3443 4990.4715 4906.0374 4906.0374 10645.2991 22238.3189 32577.0739 8501.8847 27776.1541 8999.6855 4740.3363 5578.4654 7294.7048 7249.5638 22367.8288 20382.7491 40928.1184 15695.4729 11009.3966 12107.5475 4992.9941 7833.0951 342821382 nitrilase Organic Remediation Aromatics Other aromatics Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 5521.3591 3820.2687 3235.392 5156.1287 2495.3471 54403.4431 3625.8461 3491.2909 2564.8479 7290.638 7052.8511 8095.5283 7031.9162 10386.5878 2948.7507 10024.9548 5896.5025 34615.0818 4511.2762 3503.8018 30376.1047 14019.4421 8211.4029 365859383 poba Organic Remediation Aromatics Aromatic carboxylic acid Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 9378.2829 68070.0964 15872.0611 11189.4929 4008.7011 2708.2224 4409.0069 6312.3221 4200.8866 75623.2445 5806.5738 11590.129 5563.1258 6511.649 6511.649 6503.191 14986.235 10287.9485 11391.6966 15142.3425 620344.3577 4866.1193 3570.3443 11607.0031 8005.2458 22286.1604 5999.2051 11649.1219 7514.7773 8623.2866 6189.5172 6377.5282 6256.8322 113526155 trzn Organic Remediation Herbicides related compound NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 85352.8864 1634046.9916 55587.7183 55633.8997 34573.6566 31552.2089 66371.695 127669.4503 96913.0762 61940.5886 101512.8126 108414.4954 846676.6199 102578.4911 176943.6234 115782.1371 103893.0661 103893.0661 50494.0294 124502.8274 57576.2256 64971.6451 144193.5621 106188.4011 86490.5401 95690.2078 78045.1741 185031.1744 151525.5928 110779.1055 85584.8512 57989.4168 107730.2641 90509.041 51956.6117 157520.9596 160917827 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67835.4701 14133.5603 149381.3363 95834.8882 6701.125 19106.8609 20182.9058 37657.292 22992.0388 90226.3394 20604.5342 257231.4746 24821.6899 14116.2337 47629.6231 23312.0148 23312.0148 19523.1239 67999.9291 28817.6038 53451.0822 43984.8787 58951.0423 27784.747 17808.138 24798.367 25703.9594 71333.2796 28108.4802 33761.7728 34278.5503 23213.5643 42897.0988 24457.2033 81367.988 330469331 chitinase Carbon Cycling Carbon degradation Chitin Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 19047.4742 16300.2818 6289.4715 16845.5184 14904.8342 9719.8324 29273.6798 14727.9658 12237.2643 18971.3918 7275.6031 560610.3227 12205.1667 23858.159 4976.5817 9215.0376 9215.0376 13351.2586 26235.0469 30198.5261 18052.0263 42376.9046 21734.8399 8707.5595 11058.2289 39294.21 7638.2455 61494.0801 53447.2827 26025.0854 14984.0976 24814.9376 26819.1605 9538.6607 31263.4155 119951758 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 4297.0794 1837.005 16355.4559 62371.1337 4273.3531 4273.3531 5984.6919 5335.9833 5182.1324 3346.7638 4678.9955 160880704 chitinase Carbon Cycling Carbon degradation Chitin Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4054.6768 2178.7372 4144.6668 3907.3591 7020.4651 4526.3941 2778.6808 39412 amyA Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 26741.692 18179.0895 42445.3756 37942.5867 43226.7119 84530.2749 41014.329 20501.1421 18396.0634 21271.1623 13464.1423 555695.621 28188.4532 25645.512 24458.9984 12106.9462 12106.9462 16762.3184 33444.3058 36664.7372 25547.9477 23595.2075 67212.6562 10940.2547 12531.3402 27702.8275 18786.0019 45299.1348 22063.7832 27244.6809 12766.1943 16420.9782 145177.3305 13435.3913 41350.356 226319417 mer Metal Homeostasis Mercury Detoxification Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 6741.8789 8183.8296 7848.147 2284.7743 2815.0277 4425.6187 74055.6027 5974.3744 6460.4703 7237.3592 7237.3592 3209.04 7160.3702 6572.2809 5585.9755 2461.1243 8464.2539 2679.8911 5900.5925 5742.5445 2998.641 7616.2909 22375.1715 2564.4785 6462.4997 86557794 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 132178.5165 24261.4475 148091.2901 68284.657 80205.7192 88741.6919 96140.2411 47817.3749 79014.0593 167190.7831 65740.58 62454.6843 12034590.2754 69059.7721 107043.6363 67186.8827 146011.4053 146011.4053 51344.6784 114811.0989 56106.6098 52247.8025 103202.2031 346241.142 29515.0588 39128.476 84302.2387 47390.0617 172349.8791 118017.1342 100651.7908 34708.9966 55392.5286 68791.8217 30423.8115 393116.2009 225701137 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 23393.6763 4449.102 11781.2473 5333.5738 4632.3383 3150.0049 6598.57 12079.2092 24365.7602 254445220 pme Carbon Cycling Carbon degradation Pectin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6068.8309 2760.1082 3117.4279 3860.0488 7057.8516 3544.4663 9378.7655 5941.9316 3700.1945 4037.5027 13214.3838 6122.6101 2615.7876 3356.4465 374096599 vana Carbon Cycling Carbon degradation Vanillin/Lignin Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 13476.0308 4216.0018 26340.2591 8634.8877 4774.7985 4370.0687 4787.4034 68888.1527 5612.1327 6038.8612 18067.3668 9231.5329 9231.5329 5288.3693 8031.4969 6485.7889 4909.7624 29119.9741 15553.4837 7947.4919 4120.952 9518.1078 3809.2996 22099.926 9800.1966 8286.4607 3343.2823 6034.9595 3541.2313 4920.7988 43952 xyla Carbon Cycling Carbon degradation Hemicellulose Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 93594.8291 14470.2157 24015.4559 3257.3261 7821.7733 4414.6813 21852.7825 53018.5641 21877.4966 161158.201 3901.1503 20725.7969 15536.3991 15624.9575 15624.9575 13113.7311 17276.7135 13564.4352 49617.0258 26134.671 4260.4135 5101.9965 7933.2807 18304.2409 6569.5152 23641.7698 11257.6828 13375.2129 29874.4377 21208.4769 33081.0381 27447.3647 53780.99 1805405 nasa Nitrogen Assimilatory N reduction NA Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 80472.6028 462230.0794 218503.5768 29361.5035 14872.4532 4886.9883 75571.9767 46794.8721 185648.6523 56402.1426 34122.0717 45949.4261 660204.7165 38941.5985 106361.9111 63686.3812 33704.515 33704.515 20533.7387 50787.572 26436.1715 64483.2807 68348.0607 32279.5367 30417.9691 37721.0389 27036.3802 35146.0597 97779.8203 56380.0368 52704.682 16986.2611 65509.6743 33302.9355 30556.4248 390072.8579 47572055 ppx Phosphorus Polyphosphate degradation NA Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 16153.2772 18657.3946 7143.5642 16818.6269 5705.6939 10301.5968 6076.5939 8739.8481 13723.8088 10601.7644 383562.4601 1995711.2205 14341.713 7020.9782 8877.6633 6576.6984 6576.6984 8099.4814 28019.4257 4940.8518 19979.2531 12371.6016 10741.0332 12959.7977 5757.27 12091.5764 9292.0387 24806.9488 6444.1814 11648.5647 6447.3712 12992.9237 10297.8771 5146.8579 36110.1755 190569835 beta_agarase Carbon Cycling Carbon degradation Agar Cellvibrio sp. OA-2007 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 27959.4243 4177.2829 5477.831 2251.8807 2382.4316 3682.5783 2360.6927 57156.5149 3627.1071 3412.2707 2235.9437 2235.9437 3159.2454 4080.6076 4409.4512 95125.0007 2738.2733 9480.2706 2778.6379 9306.4114 6331.6616 1702.8908 4331.6968 2968.2629 4542.3244 116070937 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 171283.8955 21809.168 36153.2586 21421.0476 8218.059 22424.7703 13831.416 16916.8954 20710.8073 23072.8442 9319.477 466415.8785 18641.8867 26658.4932 19658.3782 11700.6364 11700.6364 14812.9117 35516.038 20738.7602 21507.3042 31472.9887 38107.4239 11861.7493 10002.7036 26925.7625 9189.4694 41252.4346 21107.8777 27874.9622 11618.5144 14665.2363 12535.5013 13890.6426 28703.7991 183178660 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8230.3996 5725.9032 4018.634 3165.3645 11232.175 2332.0222 6557.8148 5411.4058 16284.2652 131806.949 11230.8348 8519.811 37102.5382 9747.1607 9747.1607 6071.1368 14454.2983 5822.819 13045.2726 12145.8962 10858.9613 4652.1957 6066.8556 6536.9517 4162.8092 18790.1834 9675.4817 9946.4381 9168.7377 6570.5856 16174.8377 5009.0532 22299.6688 259345737 nbac Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5234.3393 5486.0341 4090.8526 7187.1501 7397.5072 2946.4909 2946.4909 7204.5811 4502.9386 4769.2906 2314.7342 3411.3188 6727.1115 9135.0764 5241.4965 2860.0398 3958.0789 4722.8801 2271.4694 5372.117 112462659 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6574.4677 13130.7776 124662.6897 18340.1346 5724.6944 10547.8281 10782.2976 8629.6637 7174.8739 221362.5739 27481.3833 16194.7867 16719.3963 13291.649 13291.649 7428.9803 23263.5558 18279.6968 6187.6102 15371.9534 18243.0572 4123.048 11196.6013 54522.5334 7946.7583 40195.4697 34823.6578 22576.5578 7838.0868 19899.3369 43891.5159 4092.2046 318040995 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4240.856 12753.9359 5746.9797 2884.3111 5272.777 4984.5055 2531.5648 4888.0677 5328.4877 3924.4703 3379.3121 3236.4355 3039.3171 186472363 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 58328.153 10724.6676 14753.7223 7929.6976 4513.1813 8069.0368 15101.1169 10172.9963 20132.4805 15085.2156 24374.6276 422491.5739 27502.1278 27735.0241 30206.0512 15349.898 15349.898 7526.4212 33240.9821 22349.1676 17764.0859 29742.1936 25351.573 13195.5846 14935.9342 27597.1756 9810.9098 46762.7089 22010.9268 45735.0981 12940.8282 13970.663 11979.2729 8732.5271 12958.3561 350528177 cysI Sulfur Other NA Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 291953.5188 15343.3074 111995.2439 132920.5908 63917.8182 17142.869 118553.8717 107258.7671 168779.9393 62027.9933 83368.7992 81968.0859 3806435.2325 135764.9397 90499.6178 154058.7105 147105.6071 147105.6071 55372.4608 119629.3224 161668.4997 93797.447 111854.4489 86668.4387 48785.5791 47251.2027 62145.9306 72992.1857 150768.6135 224464.8788 124053.2231 47544.9173 64971.3445 92797.9504 90799.597 79388.1226 296254450 tktA Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 13653.0013 15213.6498 194377.7602 11134.1786 13558.7632 30025.1863 13026.7349 15929.4536 11952.3129 51163.2979 232310.9802 14467.7209 16416.3503 21155.5131 10439.0001 10439.0001 15830.4475 54550.8281 21634.0927 9669.0992 142753.6485 28078.4044 31462.547 40281.9153 17501.4994 32208.991 46132.6439 6886.9966 16200.6881 19226.6581 18060.8638 12447.1539 17412.2965 19182.7943 381375631 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 9049.6752 29307.3031 8700.8477 4453.7505 6969.486 3773.4745 2958.8328 5588.3022 8803.4759 4208.0656 165419.4722 10851.5609 7339.3789 18064.0036 6709.8239 6709.8239 7141.4623 17411.6729 8217.5758 8941.7459 12543.0667 8686.6022 6640.3493 9489.8612 10417.7746 5847.1645 19095.2559 7287.2273 12357.1162 5973.1969 7707.13 12001.5595 3497.2125 10197.4809 76577376 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22534.5895 4970.0608 17741.4202 4979.3454 4957.8615 8554.0677 6433.4854 4159.3546 227320.4339 8158.4547 10155.7161 7577.1758 2775.076 2775.076 4146.4275 14157.4678 7746.1518 10932.0502 12145.8436 4907.6082 12591.217 10470.0857 5111.006 14957.4164 4389.1538 12949.7952 7018.2398 7641.6109 5935.8563 5317.1907 18991.5657 398252598 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM84 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6611.5384 9331.8868 16318.0551 4263.7201 3503.6338 3069.4974 2970.0465 3845.6583 98911.6166 67347.4278 19259.6534 12988.0995 6504.6341 4335.4314 4335.4314 3359.8336 8579.459 6333.6728 5260.223 7638.0686 6357.579 2989.0574 8644.0903 7770.0031 13565.1215 7243.9341 9294.3223 3339.9642 3987.4767 4362.5584 3942.4456 5288.3431 115256008 phn Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 125471.7545 56036.5215 8123.9391 55009.7934 13270.3225 25608.4784 38925.9938 48919.4345 26223.6689 61268.4785 47119.8115 459606.3926 50962.6915 66439.8649 51112.6378 42951.9284 42951.9284 66953.1503 76606.3497 38737.4837 51446.7794 106187.8363 38964.5868 33390.7087 40041.6355 30121.1853 64706.845 70092.5691 38053.569 135898.13 92368.8704 38468.4579 52974.6327 23962.8018 91944.9443 118171850 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9089.7507 9672.2699 7394.9645 3553.4146 9118.2371 5996.7503 4208.767 4757.4843 15753.36 149124.1065 4933.1927 6332.7979 6060.7487 4525.0484 4525.0484 3530.0244 8251.8221 6468.1949 4119.7982 7245.6378 4199.4789 2943.3321 6640.7993 12583.2092 3884.5711 15619.0386 4767.3804 9040.3065 5675.386 8522.053 13271.7521 3371.8543 60221.3352 291423015 vana Carbon Cycling Carbon degradation Vanillin/Lignin Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 6045.8662 2343.6941 4741.2914 13196.0968 19388.8905 7979.5342 5037.7901 2885.0548 2885.0548 10642.0727 11854.7777 5520.289 8515.2561 2231.4037 3169.6411 5928.7987 2873.7423 5097.3537 2897.4316 3656.3989 3243.0342 68872.5307 237858245 GAPDH_Parabasalia Other Phylogenetic NA Macrotrichomonas sp. GsMG10 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 6639.3783 3049.1438 4534.6602 3399.1247 4919.1341 5011.089 17476.5689 112733.3861 8413.7884 4694.9961 5127.048 2600.69 2600.69 6523.6732 9530.055 5848.0413 8884.7835 6870.3594 11206.3905 2994.5907 3277.0387 9282.228 2460.2634 15278.1741 8228.676 12130.1067 2471.908 4413.5016 6166.9286 2194.3423 8357.1683 315589918 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 12768.1131 9105.5116 2518933.9952 5177.5862 12958.6545 5054.2491 6639.5715 46394.9707 6531.9484 153331.4291 8216.0451 11929.4815 23058.4927 6137.0613 6137.0613 6291.3718 10437.3323 11259.2838 16658.0997 8305.7269 9251.0027 7723.4197 11031.9379 16492.3138 10762.8646 19320.268 17593.133 20492.9573 6832.2314 7682.7933 10330.6743 5479.457 17126.917 383107755 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 19409.2454 7521.0241 28033.9707 7638.9823 45925.5839 14747.2652 3944.7597 37820.7693 22541.2285 9002.0081 182801.8691 14653.786 16194.6 22028.0063 23540.629 23540.629 9105.8623 19927.5176 11525.1079 21421.954 12667.8014 8380.9868 9435.5027 13131.9258 13713.5145 22573.4761 30199.5608 36937.2 20734.3666 22439.3792 23571.6304 21092.8187 7293.9425 11114.5576 351684017 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 20872.5959 62049.0233 11063.9873 29061.0164 9821.8271 12257.2541 19253.5472 6712.767 8564.3097 11030.9108 6446.7906 163685.7364 13489.823 11714.1181 12607.1965 9436.387 9436.387 10965.3038 13379.156 11821.2396 29202.5432 9378.2964 13225.6351 6135.691 20388.2385 21293.5374 29270.728 38185.2943 12965.9021 18046.6593 7348.2647 8508.3846 5964.0681 5754.8774 13046.4623 343426697 ara Carbon Cycling Carbon degradation Hemicellulose Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 17239.6545 11168.7209 6383.5386 5347.8343 5728.1625 10038.3882 7033.1707 4236.3337 9116.5027 9837.6451 14011.0961 200468.1661 11180.3725 20371.0659 9857.6369 14795.8162 14795.8162 6407.3009 42885.567 9001.6799 10334.1107 14530.8121 10357.6296 6202.5495 8063.8519 13000.4293 6601.7956 31183.204 8001.8131 13601.6941 8221.5865 12972.7583 11857.8423 7603.6795 13161.5262 356880580 napa Nitrogen Dissimilatory N reduction NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 4913.0664 2535.049 4141.3502 4608.5309 4608.5309 2876.5552 7914.2162 4435.0887 5425.1826 3029.6436 2462.5691 374814630 ara Carbon Cycling Carbon degradation Hemicellulose Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 12519.9911 27371.8566 7227.5178 12267.9539 14513.3828 6732.4317 8509.4066 10293.6848 10139.7105 5614.2818 314580.9472 16972.823 20045.3726 9567.8845 7132.6505 7132.6505 6395.7528 13482.0894 13099.0802 79244.986 11842.4525 27924.2977 6608.6421 6385.0638 34743.3795 6605.8901 22168.048 6453.1322 11352.354 4921.9211 6560.5177 5918.9566 5897.4735 14651.2606 91710057 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 9825.28 3278.0015 3704.4596 2600.3278 6972.2583 8142.1592 4901.8868 128852.2277 5819.7788 5735.4096 79985.7867 79985.7867 3434.0555 16988.6374 7818.8902 10145.2674 19511.8052 10274.523 3243.0535 5319.0219 9455.0537 5140.3877 17105.3541 9222.111 21296.4195 3787.6042 36314.4961 9666.598 5422.4679 10605.1937 338814948 amyA Carbon Cycling Carbon degradation Starch Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 13550.5507 7422.6939 8273.3496 13183.7754 10414.1118 7220.0655 4999.6057 11485.3441 17988.3876 7093.7273 286737.1845 11361.4445 13203.438 8494.4043 4445.69 4445.69 8887.3543 22458.3957 14467.5248 13463.4142 14334.2479 16993.5612 7958.351 7726.0418 17853.2245 6015.9416 23777.8993 11461.9826 17877.8312 6281.357 7410.8239 11148.9443 8692.3736 20094.7951 392379327 xyla Carbon Cycling Carbon degradation Hemicellulose Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 389269.6605 157077.9861 17664.0246 39115.0364 6155.2575 34344.5398 46902.403 32597.9078 166127.0656 223396.3655 32875.0606 1284994.7305 46540.1025 79581.5739 78600.1993 57890.6376 57890.6376 39346.3125 110036.9148 102163.7917 44189.2909 94116.9769 51455.0418 41708.3788 96032.2659 30994.2139 34385.7117 95477.103 35785.7628 40003.2698 78543.7392 69129.1999 159189.3312 46968.953 63149.1409 325180817 actin_Stramenopiles Other Phylogenetic NA Albugo laibachii Nc14 superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 9201.3293 8088.7518 13068.3531 9181.7772 10556.4223 7545.92 5673.7672 9792.0937 9467.4818 6681.3989 256366.4138 14658.9114 10431.6248 11091.2676 5525.5655 5525.5655 8935.2679 18180.7303 13298.3874 14779.7577 12503.39 17546.4623 5956.4829 6296.1025 13185.2539 6580.1165 19429.4167 10763.0234 30144.581 7484.0575 7310.0101 8135.3134 5815.5143 20395.8657 398347799 b_lactamase Virulence Antibiotic resistance Degradation Leptospira broomii str. 5399 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 14361.3143 5675.1349 4560.2268 8087.1251 3752.4035 7887.0411 2358.1671 3107.0171 10981.8906 9151.1191 51569.066 5039.4412 6681.259 11287.5634 5917.9187 5917.9187 6826.0807 6978.2119 22316.2161 17543.7746 9020.7668 19439.1622 8953.8858 14118.4959 7518.59 47684.0102 9835.417 8213.2763 5254.0355 3263.5037 9754.4252 227934983 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6633.8869 4235.7077 3058.3006 2450.4214 15726.5393 4055.3343 4909.8105 5770.6122 6374.3847 8995.1879 3234.6407 3437.4981 5433.5509 422313913 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11204.7954 7340.5316 8236.1118 6352.4335 13975.1092 6560.0553 10897.4929 7231.5104 103703.5779 6400.887 7610.4918 4887.2522 3829.0977 3829.0977 6294.0597 15281.6248 15564.9284 15774.8219 15082.3534 9580.377 9355.4215 5850.147 8057.6659 23721.0932 25743.1135 12859.7678 14461.9375 8132.0657 14386.4105 11135.4632 9177.5032 15089.4042 83309166 tktA Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9295.3599 21636.4054 11277.7362 20089.0484 3548.9996 24848.7358 11504.871 4722.7382 12515.6743 7104.0392 271021.8952 46930.1592 10979.2889 16567.772 7498.747 7498.747 6179.3671 25840.2106 10392.4805 7949.5624 9738.1931 6992.979 23893.079 5785.7397 19215.3831 7010.1938 50195.5222 12294.9151 12417.2174 11313.7399 10488.1944 5770.9514 4773.0053 10628.9146 359395430 amyA Carbon Cycling Carbon degradation Starch Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 5951.3985 5661.2564 20283.6161 3932.43 13194.0268 3754.1602 135141.1855 4228.524 3553.0346 80383.2525 5497.7048 6190.3341 16472.9174 16472.9174 89368.7654 15379.695 26815.4623 4289.8491 5298.3001 5730.9596 6113.8173 16581.6499 4057.4757 68661.7531 5188.1768 9294.623 3574.5477 11984.6324 18677.0749 78182.6355 26351.6901 371544272 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 15649.6002 62772.697 12522.638 37462.9752 9107.6563 11453.8198 21344.5368 19401.9828 22287.2966 15141.354 12948.6832 491540.9778 160082.9417 21359.7088 18705.8289 14333.0075 14333.0075 9717.639 18974.5909 14805.6998 18192.6288 30960.62 22125.0242 8642.2359 21307.3822 25165.6363 24503.4448 40036.531 20950.1731 24768.1288 10670.5965 23475.429 14912.488 8718.1386 16195.1388 217503946 cysI Sulfur Other NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 18861.644 24732.6715 7888.6534 9079.9227 6973.9109 15288.5337 8553.7305 8700.7175 14857.4082 12951.848 130753.5394 14834.1218 17167.8578 49399.9206 26345.1932 26345.1932 39985.5048 25665.8263 8609.8395 32682.8414 49621.2998 25183.3615 10786.0448 27588.8701 22488.8761 10451.0868 751142.316 27649.3324 42192.3566 8951.6346 68879.7749 18220.0186 15492.7314 13916.9205 255707990 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16368.8098 15357.0379 5770.56 9742.8857 12957.8526 12239.1167 5670.9367 8933.3762 8552.9205 5439.4462 298720.8699 18802.7807 79162.6592 14046.7148 7039.9196 7039.9196 15740.2601 46183.9024 12774.0595 17067.5092 19414.0331 5682.4335 12270.9699 8255.0225 8640.4446 41937.4098 54555.0288 11667.7964 20327.2107 17024.3124 15157.6354 14864.5605 9785.0863 31339.7482 365183562 gdh Nitrogen Ammonification NA Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5410.5744 12333.6858 14362.561 7908.8509 5026.3023 2671.359 3829.0522 5030.0611 70712.2953 6146.4568 5537.8042 5328.3807 4059.7878 4059.7878 5287.3358 9772.7343 8670.397 9418.6504 10167.8272 7315.5999 3955.5667 2762.9324 9920.7141 3558.8144 14592.7179 9565.3187 8433.1145 3346.3265 4318.8155 4955.6305 5395.2504 11306.0511 357977555 phytase Phosphorus Phytic acid hydrolysis NA Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6774.4838 6367.3881 26966.1691 22899.4122 4181.2214 5358.1177 8147.6726 17942.8542 34773.2285 233168.4375 10347.4048 10094.8951 14668.2675 6902.6368 6902.6368 4741.1775 13790.113 11668.0092 8912.0985 10265.0004 10261.0562 3398.2595 7488.2926 17680.9083 4074.7184 20426.7376 11734.8925 28144.8204 7289.4543 122372.1254 7289.7443 3316.4809 5685.7291 384104916 badh Organic Remediation Aromatics Other aromatics Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 49611.6144 8797.1022 6441.4217 18403.2419 4122.4346 5112.2072 37695.033 6138.6271 5382.2245 12552.2038 7422.0872 7422.0872 4926.7819 10512.7496 6776.6773 16951.9018 21902.9592 9362.5594 4383.1479 13454.264 6874.4209 15402.8987 16034.2903 12783.7795 3218.2785 7290.9855 8075.7274 10445.0603 8810.4868 147885996 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 156800.5193 129999.8305 657962.8538 45301.3815 18856.3835 69946.7996 147439.0387 217592.2337 220445.5043 104430.2887 137982.4324 14294335.081 392133.4981 284413.8244 216298.2024 216198.1362 216198.1362 168992.6099 379516.6197 130482.6537 152772.4212 176268.7722 182225.0597 127180.9561 83800.9999 141627.0451 107732.7602 353414.8777 205109.1078 214180.409 45497.3933 122860.7949 131715.9317 85640.6943 319436.1416 74056431 SoxA Sulfur Sulfur Oxidation NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 6847.266 4051.6825 3275.04225 3746.262 3429.3623 7521.4516 2505.0095 128129.8049 6645.6275 5113.83755 8103.5014 5597.8876 7262.1023 9674.9002 6946.72965 2628.9357 4079.1897 7614.1096 3336.7063 6436.2942 6875.8336 3042.4293 3903.55295 4449.6509 3876.5 8783.13805 289558570 mer Metal Homeostasis Mercury Detoxification Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 3777.7163 8778.5491 10724.0853 2224.9639 4417.8123 11348.9372 20567.4135 10396.5532 101380.9779 6985.6006 5730.4057 4225.7055 9684.7014 9684.7014 3945.9682 11183.7028 8179.8779 5140.2522 8753.6067 3996.3751 14126.8981 6634.2853 9547.6627 4674.4818 14444.7545 10492.0061 5821.0648 5810.5487 12562.4649 6646.3334 9959.5046 114330063 mer Metal Homeostasis Mercury Detoxification Nitrosomonas eutropha C71 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 117830.5369 16766.8583 27251.6568 26829.4258 6484.8625 16497.5291 32566.262 14919.368 14392.6014 545635.4678 38356.2418 351623.5884 32228.5957 32624.5438 55086.4074 17823.9286 17823.9286 15391.6159 34012.7098 16241.8961 18825.5165 53996.3653 10138.2914 22553.1534 31422.9414 32507.9018 33515.8675 71271.7941 56217.9369 33008.8639 72538.0075 43422.0048 63751.3616 29779.4397 26557.5693 150028717 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 3823.3448 3367.7217 3216.7115 6353.8308 7952.3033 15226.1082 4063.4109 62153.2464 5878.0253 29651.6146 29651.6146 8997.9936 6292.0868 12101.1338 8156.6807 31386.5515 4509.1761 6416.8676 5849.5193 3701.4751 20838.8269 8349.0009 5863.5719 3776.6866 4675.2127 5710.9617 6693.1428 384093136 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7161.7902 20092.9802 20160.6075 15478.1682 3635.6929 11053.9679 3602.5461 37207.2278 13651.6279 18727.0385 454476.2281 44519.7628 35056.1071 34876.4298 51371.9615 51371.9615 6739.2821 15365.7923 9165.5946 7759.5267 8061.199 11729.6854 4753.4377 10327.1594 29261.8941 6135.4417 23442.926 9479.4556 16725.8829 7552.9347 6303.9397 6291.7409 5060.5719 13187.22 242825653 protease_serine_fungi Carbon Cycling Carbon degradation protein Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7484.7576 8246.1842 3630.3044 4500.584 12838.3987 4380.925 8557.5356 8530.1939 4832.5748 6761.7747 5681.0192 2336.3889 2336.3889 19460.151 14382.2733 5588.5334 8573.6159 6012.9294 7387.8631 3583.9464 3894.2641 8438.8151 3169.9861 12826.9499 4162.2536 8275.8066 2963.6557 6850.1012 5338.3488 3648.3686 6192.5841 271969912 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 32012.0593 21697.2102 20708.9024 16149.0499 11891.2554 6560.2527 7312.8773 13318.6333 33980.9517 15422.3293 44706.1024 920101.5626 13356.9314 29617.5196 26257.6438 22639.1481 22639.1481 12318.1735 36340.1983 12759.74 4369.8257 25124.223 7218.9723 11814.5892 15644.5174 24670.1071 12999.1013 5983.3569 25024.7272 62285.852 19352.5451 15813.7695 25193.1256 11874.5035 5399.781 87302496 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10042.5509 10478.7935 5158.5783 22521.7181 37615.1058 10769.0704 5572.7413 11059.3317 2448.4652 9460.7131 10867.2631 11908.436 234009.6984 12846.9776 18600.2871 18551.1053 10445.8509 10445.8509 11696.173 24479.3791 10055.2076 4427.8103 69451.8245 50492.3594 13772.1339 9384.4959 15898.1084 5911.0468 36716.8912 17635.1403 17966.4473 7676.7368 8247.9917 8981.3141 3508.1338 11063.2677 157404154 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 22202.4932 13028.5873 5354.3776 45670.7995 3255.5905 4475.362 48895.4584 7262.4091 13484.2557 88915.1859 5878.4222 18506.599 4680.5091 4317.3633 4317.3633 5427.2616 97757.5354 5263.5732 5188.0525 6170.6626 59212.1693 7771.2716 5702.945 7969.4614 8950.9204 554335.5479 12594.7447 8332.0566 13744.8708 6598.6101 6307.4785 4618.2574 10525.9807 223999105 gdh Nitrogen Ammonification NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 6491.6711 4558.043 4762.5233 2488.0968 4327.9164 4817.3796 2526.8427 98517.2483 4495.765 4050.6223 1948.974 1948.974 3536.7703 11629.0086 6229.2341 4357.9303 7995.604 5965.6386 2897.525 3254.4312 6361.3801 2575.1888 10729.4649 5396.2556 9084.3741 2867.6319 3475.6396 4213.1002 3072.578 7497.5776 55978088 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4721.4304 5328.3679 35511.1871 8444.8956 7882.6035 4523.8071 4181.5826 2637.5718 94813.9767 5930.5877 9000.5919 5610.101 5180.2851 5180.2851 4001.3241 14198.9636 6752.0848 17176.2953 103383.727 4707.6598 6203.0369 15934.7636 3657.7214 14978.3533 11190.1112 16194.2318 3788.54 5906.2461 5320.1667 321146126 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 15541.5317 10950.3333 15842.1072 15283.0922 11972.5498 11994.7895 9118.9124 12922.7216 11968.1877 7003.1556 275128.0431 19128.0311 13744.7278 8862.3876 6516.4726 6516.4726 10903.8311 18709.4572 13547.8963 15385.5111 21223.1417 26468.5925 7563.5598 7536.9282 22437.1043 6041.7293 23185.5628 16951.3325 25722.5609 7280.0157 11045.0339 10373.8901 7303.0582 25430.8299 341822878 ppx Phosphorus Polyphosphate degradation NA Megasphaera elsdenii DSM 20460 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera elsdenii; 34664.7326 29280.4503 40139.8842 19944.5867 22326.0524 33138.3569 30405.5945 12989.3538 26720.1852 45756.3288 26808.7924 512810.1895 49193.7043 27287.6771 17535.6321 21836.1312 21836.1312 13506.5965 40392.1046 28791.2909 33049.258 37500.2531 32356.2116 14033.7306 18473.2982 31402.8276 23225.0576 65266.7859 24222.77 34441.5202 14277.892 31409.5014 30718.2526 15349.634 25442.7359 338738726 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 98422.9293 14197.1906 116736.2633 26388.0966 36612.7954 9253.7643 117817.2751 167124.1318 54497.3487 65894.7344 100746.8273 80957.7636 1002016.6793 68685.0871 76507.6585 64396.9723 95694.4293 95694.4293 69960.9592 102741.6585 46687.5541 113175.388 441257.7514 84519.6579 111348.8535 51660.4606 74369.1728 36355.8177 114621.5496 114530.0966 89476.8424 32322.6025 48706.2725 74956.5442 33628.0428 78080.6399 296100572 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 6236.1392 20025.4242 19358.7748 9867.9561 4123.404 4526.6212 4982.2205 123554.7828 5889.4838 5970.8686 6902.3137 5761.7777 5761.7777 20816.4695 5998.4136 190792.8862 5557.0943 2786.4985 4083.872 8623.0739 3611.3202 12899.0182 4177.3573 8018.1608 4070.8401 3704.0907 4251.014 3685.8688 4924.9318 237885398 alkb Organic Remediation Other Hydrocarbons NA Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 7375.3786 5583.1315 5514.4609 3625.2437 4197.742 4659.5603 2917.7444 8897.538 7341.9042 3364.4466 3364.4466 7632.8715 10014.7767 4274.5276 11529.6175 16155.1707 6279.474 10010.8963 6560.1762 11687.6964 1873.1936 4444.9632 5805.649 3679.1517 372475418 cysJ Sulfur Reduction NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5186.8026 26296.8281 5225.0629 18256.8273 2958.9762 79615.8181 14714.8119 6057.0388 9243.653 289645.1869 289645.1869 2391.3642 4378.8111 4315.5078 2882.2237 8592.974 7869.2039 6594.4725 6478.6455 2774.7193 3351.4982 3065.2592 2402.6292 118571428 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 8994.8172 11878.7801 3850.8068 136033.5949 3233.525 15419.441 9882.1507 11069.4812 108541.771 5991.3257 5405.0522 8704.1039 6122.4302 6122.4302 4818.3492 14992.557 8532.8282 5134.5333 19364.5479 15049.8038 22134.4708 5240.1516 6663.2465 8796.7072 23510.2295 12070.2478 8219.2654 6065.8523 10183.7908 8431.6747 4972.9316 7101.7089 193072763 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Streptomyces bingchengensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 38590.1255 16835.4335 15650.7251 14473.6498 17046.1489 12197.1803 10851.792 14334.4533 18383.6047 12370.9285 418788.1834 21868.1225 14420.4811 12474.8778 10628.9486 10628.9486 13092.3669 38639.4591 19267.311 20161.4035 23272.7139 34245.6376 10393.6411 11491.4984 21946.4198 13596.4537 45891.9762 13474.1344 19724.78 11053.3998 12312.5558 20646.9827 12225.8713 30128.9995 400537952 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 23432.6121 60412.6811 11372.1364 22127.7056 8599.8879 8349.1369 58923.6819 115708.466 18691.984 194000.6315 39926.7104 223447.9593 15310.4806 32047.0506 33170.679 25745.0161 25745.0161 26156.3742 50794.1774 19312.2982 124449.4621 23250.578 31060.1465 69260.6672 20564.6382 19771.9462 25579.2434 60071.2838 24173.5716 42495.5498 6006.5203 19796.2488 37182.9687 12035.9192 27996.1023 389887940 ppx Phosphorus Polyphosphate degradation NA Coriobacteriaceae bacterium JC110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae; 13608.0928 5616.7612 2464.4889 2929.3932 8801.5402 9555.5269 7082.1825 4801.3704 11305.0109 6973.7069 4026.2839 11442.8064 8155.8453 11655.3211 13970.4612 5945.0942 11537.45 2529.8091 4692.2143 11602.7667 394453961 nosz Nitrogen Denitrification NA Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 6551.3288 13869.5343 5073.9014 2739.1758 6299.3071 3446.3774 5614.3709 3952.8904 6892.1938 9270.0217 6577.6387 3260.297 3260.297 12970.4007 3994.9371 49397.5094 8320.3854 4823.6727 4741.1821 5614.0927 10021.8738 6014.8345 3717.8345 8964.0671 10592.6445 7260.3691 5212.1984 91807182 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9029.7293 5074.9112 9501.5831 5636.648 7513.8328 2796.3025 8724.9832 10035.7367 10908.5712 150257.7803 11789.6298 13252.3313 5363.1279 5837.5808 5837.5808 7975.0845 16165.1407 9056.9667 10122.0976 10679.9232 10388.3338 6645.7837 6093.6702 20924.0264 8250.5576 22113.2422 11744.7178 13612.3533 5516.6505 9624.834 11513.1307 6442.387 12449.8138 209401856 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16784.1578 20400.7581 9701.7136 12231.3568 16528.2424 11517.1526 7848.8833 14134.831 11240.9226 287783.2433 10503.9125 16303.4177 23127.664 11755.5496 11755.5496 14263.9228 46755.9628 14326.9547 24265.0026 28614.0584 19979.7889 7246.3715 30593.5584 12908.7268 15179.9589 29456.8208 44023.2363 15332.953 10269.1767 10951.4662 16125.4333 11247.1849 14964.105 358458397 poba Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 68783.391 27121.2267 6886.5614 13870.2686 9294.3176 13514.7169 2555.2808 18843.5166 28948.5169 11101.5958 107305.429 7049.0243 55061.6419 50883.7168 18155.5603 18155.5603 4859.3866 29821.6331 5076.5022 10652.1051 17588.2819 8828.672 17227.5034 8997.7 11026.0185 9248.9244 45684.6605 19521.1176 11351.849 5895.1937 8791.704 14910.6857 16193.0624 14410.3729 325498660 one_ring_23diox Organic Remediation Aromatics Other aromatics Escherichia fergusonii ECD227 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 25746.7192 15285.0234 20058.5791 4758.2611 8212.5506 3464.369 33124.4048 30059.1976 20224.0549 190191.5895 13297.0709 11445.3664 9885.368 12134.3714 12134.3714 26628.2206 23117.5733 10559.2022 12346.9884 40885.391 14013.7005 7945.1989 13623.7477 13821.8143 11032.7806 23247.3028 21321.1199 14557.4897 4645.8356 10381.1316 13199.1284 9725.0518 20180.7142 94471277 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19365.6019 11908.003 8902.0238 22875.629 6679.2668 3511.6109 14923.9569 4505.9085 5997.6943 22375.106 9886.6947 321328.7495 13233.7011 11654.2203 12465.7863 9032.1815 9032.1815 7661.2835 17356.8405 9612.2248 13640.3584 19525.7842 12114.5575 8244.6257 9422.9611 13370.6607 8347.4806 29052.3212 11989.8569 26765.1666 41908.3453 9602.3999 12256.6971 28090.568 25886.1636 128168593 GAPDH_Parabasalia Other Phylogenetic NA Devescovina sp. Nk9 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Devescovina; 5838.8381 6913.5135 2594.9916 5360.5465 2391.3891 60527.8961 5011.4929 5115.8385 2853.0988 2853.0988 2792.0406 10012.9807 6692.7782 7463.1938 8190.7517 5972.4377 2315.2763 3125.0799 6166.598 3416.9895 9633.8209 6308.5983 5815.2435 3435.6573 4475.8669 11204.7906 5248.5658 5954.1207 116700520 dsra Sulfur sulfite reduction NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7443.125 7646.2988 4022.9953 4662.4918 8581.8671 4735.8811 58982.6732 8340.57 3974.1595 4761.0916 9615.3856 9615.3856 3160.7132 10060.2429 10146.0334 2810.253 2767.4841 12543.7033 8321.3593 8057.7516 12602.7821 7068.2079 11586.9919 3077.3654 5347.2842 342821898 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 21332.7967 8833.3042 44210.563 12393.0826 4823.2547 22502.5879 19313.9371 13144.671 15899.9249 22344.228 8517.9712 284322.9949 14704.5647 17443.2796 13974.67 11211.5455 11211.5455 21918.962 22653.4318 16125.9869 26137.6586 19252.1619 14789.5365 7762.9212 9718.854 15293.4515 13838.7698 40140.3425 12061.2225 34892.1622 32449.9041 14886.4473 14758.0868 16230.495 47795.6044 31619067 linb Organic Remediation Pesticides related compound NA Mycobacterium bovis AF2122/97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium bovis; 4497.6343 13337.2149 4762.0013 5197.3813 77909.1286 4754.652 7006.684 4876.3793 4876.3793 10156.5162 6269.0049 10491.0787 3484.6272 3648.6734 13093.8792 2501.4172 14541.0869 8998.2612 9889.1464 5241.5468 3934.9729 2969.2003 7604.2772 328927546 nifh Nitrogen Nitrogen fixation NA Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 24597.2726 7532.667 4515.8099 6831.4652 4835.7317 8921.1962 8962.1595 14774.7792 10981.4544 332512.6843 8630.5462 9188.3559 9509.866 6704.3939 6704.3939 6426.9585 34264.7474 10385.6912 18287.6239 14341.2453 16959.0645 5586.8694 8593.6318 10642.2853 5448.2661 15993.8271 5030.5925 15038.3288 8909.9314 17848.0153 9050.6656 6992.0816 17233.8029 392957256 arsc Metal Homeostasis Arsenic Detoxification Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 34651.229 17034.2274 74317158 TIM Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 12690.1925 4191.5729 8132.6199 6254.5095 4146.0907 13899.6012 9464.3233 8742.1907 277035.3884 7626.7353 10223.5561 29813.6973 6913.984 6913.984 4311.1577 13643.182 11933.6542 8056.9098 8590.3594 10178.1839 7597.696 26733.3498 11447.5992 27640.2148 139243.0886 8328.3727 15540.3924 13826.4795 12362.9656 13573.7165 8805.8689 56456.9753 157070504 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 35643.1304 10248.3771 64874.2062 26924.6999 63932.6559 30350.081 6933.3077 13576.5597 22900.728 13873.9935 29225.3421 42618.147 405538.8422 35611.8482 36891.4916 40249.6654 25048.2306 25048.2306 201402.4557 32343.4591 23532.0388 17463.4778 63574.3296 13407.2688 18910.0787 36396.3749 47840.1638 20492.5547 56044.9637 61931.1295 50096.5368 8465.6246 44152.7718 27474.6562 24815.5547 35884.5608 114569955 TIM Carbon Cycling Carbon fixation Calvin cycle Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 7726.9799 13962.3634 5521.3837 8778.8349 5046.0633 5888.5034 12227.4755 592499.1374 5199.0483 10951.8403 10878.4736 13010.6882 13010.6882 21406.4202 14057.9276 5391.3439 15801.4206 18989.8309 8642.9649 3993.6326 4711.3713 13192.0008 8582.462 21742.0886 14279.0004 10942.5384 5046.6933 12790.2437 4969.5285 29151.1165 7590.5905 334703036 pula Carbon Cycling Carbon degradation Starch Aeromonas caviae Ae398 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 58411.4967 19011.9486 40314.15 63247.1966 68562.7426 13678.9513 75357.9979 33808.2452 32890.4753 44254.1496 323662.3413 41942.9144 1195276.8237 58847.3549 82009.2026 54778.832 39261.2004 39261.2004 29810.3021 84073.4586 48163.4395 240491.9238 81137.0269 84979.3069 31190.2164 26494.2372 51451.5381 23641.5665 115696.5416 41207.0727 70647.3576 26807.0621 39859.0984 35533.0399 24674.3806 94546.5199 95111183 catechol Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 26636.4715 37632.4649 23125.2406 36839.2966 30671.0855 7236.9455 13997.6534 30845.1519 11421.3108 52690.1811 31610.7761 22556.7072 375609.2022 32727.8057 36237.6372 28261.0809 25192.4082 25192.4082 12277.2471 25840.6561 17513.6976 24256.0822 27227.8691 26207.1842 43477.3856 21810.9675 39301.8045 23463.2764 55075.2485 13112.9337 37258.6892 23912.6106 29128.5235 50297.0828 12492.7085 98585.6655 330502255 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 5289.7275 2537.9831 11505.7431 2754.414 79775.9088 3410.9445 37777.3051 5812.2569 5812.2569 7306.2715 6006.388 4438.9389 6500.3387 2922.8422 2119.8796 5818.4726 9489.2495 4584.2038 6334.6775 17529.0034 10907.7076 11826.9064 2196.4325 4639.4713 111026237 amie Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 106215.6234 67002.4448 83555.6426 62323.653 62055.8517 38757.0527 53722.233 82484.8618 64552.3489 86907.4776 102833.8375 59371.7533 2000601.7725 86462.3645 154706.7003 87560.1066 148526.2224 148526.2224 68843.6925 91215.7775 62219.158 312039.5522 191469.4399 89867.4303 46878.2432 55048.5404 73062.8565 108094.6135 159551.6123 89594.9066 114740.3521 102357.88 58578.0761 172490.6433 46456.9759 67555.0916 10863147 nifh Nitrogen Nitrogen fixation NA marine stromatolite eubacterium HB(0697) C102 superkingdom:Bacteria; 6655.8756 6245.595 7019.0444 3098.5413 5740.9801 2600.7351 4712.289 7031.0841 117540.7526 7700.1245 7014.8333 2706.7978 2706.7978 5421.8527 9986.2938 7171.4506 6372.4571 12107.7692 9658.6108 3670.668 3230.8532 10431.118 2931.1335 10368.4826 5962.959 9543.3488 3384.6475 4642.3162 4930.4456 2760.3905 13163.9226 199594051 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 58956.3621 28099.8669 147895.1099 58586.2828 48905.4307 19285.009 38377.2935 28305.0796 21928.096 52214.0791 91594.3517 35830.8774 1754196.0413 50597.2081 44096.274 90476.3677 62566.7096 62566.7096 28838.9555 62221.2698 31391.5737 121292.7438 46838.2197 50511.2456 39346.938 43656.6435 212853.9892 40696.8996 91797.2295 54376.9576 66041.6647 27702.8476 40735.8853 58590.1574 33278.2496 52216.4369 395496338 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. PAMC 25886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4292.7187 24931.2285 1959.5333 107068.9114 5844.0511 2209.1336 2209.1336 8097.4894 3942.2015 4441.8196 6772.5004 4432.9988 5907.5801 11144.0906 13447.8983 5979.5708 4535.3137 2634.7827 4351.8765 2747.9077 379067075 nitro Organic Remediation Others NA Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 23418.331 12124.9369 19319.7326 8490.973 6262.3339 36891.9332 11735.1274 19018.2553 8048.4978 4240942.205 18609.684 19132.9715 19736.0462 6416.5072 6416.5072 25216.2937 20918.9747 12964.4594 12177.299 14558.7279 13333.0986 8245.1394 15506.6316 12955.1139 7245.6442 23853.6635 18678.3602 13258.8657 11829.117 8891.0733 13569.6214 401527.1847 16590.3042 390423501 mannanase Carbon Cycling Carbon degradation Hemicellulose Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 4055.5772 2200.1968 3393.0492 3519.9272 58414.6144 4343.1715 3653.3081 3653.3081 9351.2909 3638.2765 5154.6206 2853.4274 5010.1955 5683.2955 2466.0669 7512.706 7427.5197 3856.6144 2686.2539 12241.0974 2367.5884 223039917 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 70702.6011 32236.5702 54262.7304 66393.4045 33477.8106 16976.2364 61230.6229 42045.856 54964.8641 218791.8963 119523.6475 33883.2406 1347361.0767 71983.5811 123042.9149 111488.3826 70058.6813 70058.6813 36798.9774 78613.3022 55832.5977 79737.4776 118897.7155 86984.0086 34025.9796 34175.8182 66567.2966 30333.3289 119261.6693 80648.0891 68937.7187 356503.5969 55684.0949 61924.2469 50942.4595 102427.9912 164455284 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7806.1693 7842.413 15531.1782 248007.9735 6343.794 3506.068 4064.8752 8665.0961 3706.6615 69224.9176 6500.9712 13215.9994 4866.8323 3069.1131 3069.1131 2978.5232 9440.1693 4886.0156 7886.1612 9579.9061 2901.2407 3837.4142 3586.6986 10777.8357 7693.5736 7398.2631 3515.2372 4918.0204 3738.3609 4853.2768 8741.7322 315092073 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL110PA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 4502.7146 6632.2811 5533.7785 7153.3408 4013.163 35868.1268 11266.1415 2375.5724 2375.5724 7006.9907 63488.3894 5483.0478 10691.4446 5368.9925 8972.156 2248.2061 4545.1145 5261.976 154492683 ara Carbon Cycling Carbon degradation Hemicellulose Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 13317.4468 6845.1025 3545.6817 2546.8547 2021.4563 4241.6522 2757.7316 9616.9911 3724.5977 3724.5977 6074.6749 4534.5347 4306.8771 8667.5509 2243.7388 1989.1043 6276.9354 2118.6474 2844.416 10871.3421 196195102 linb Organic Remediation Pesticides related compound NA Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 17812.7166 17675.9718 288294.6914 8128.2824 11069.5028 8147.9192 38945.1371 10860.2893 180614.1341 27089.3886 15834.5078 12162.9263 36639.9191 36639.9191 5578.3756 19129.8485 7396.5995 14640.3901 58533.1392 16211.6612 5460.837 20041.6145 7840.643 6906.9557 18108.9379 33121.2778 28286.8004 5204.8393 30057.1023 6500.1897 12521.3415 9789.7852 85672717 ppx Phosphorus Polyphosphate degradation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5267.7234 4873.1362 4548.6311 80509.0357 4117.786 6991.3694 4938.912 7122.3377 10915.1959 2653.9591 5377.074 3248.7833 52549158 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos26B2 superkingdom:Archaea; 5810.3448 6667.1853 26792.4439 2525.348 10503.5897 11028.5305 9404.634 5423.6186 3009.0849 3009.0849 2642.057 8381.5513 3418.0765 7575.8113 4280.0149 2278.0427 3632.3628 7436.296 4593.3291 9777.9636 7540.9909 24371.0877 2032.2288 9918.2826 2930.221 1973.1997 4753.9559 114764025 ppx Phosphorus Polyphosphate degradation NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 23112.6098 10920.6738 7428.0184 12575.4835 6543.5412 4276.029 32286.8389 13970.7084 10010.8067 192614.133 67091.165 56517.2044 21218.0681 25054.7717 25054.7717 6517.0373 30226.4436 11403.7411 19415.4932 42183.0152 18302.1562 7025.8424 26653.2129 16276.9529 31731.575 156389.6599 16435.6184 16048.1854 5755.6202 19814.338 11622.0034 6032.3173 11625.4275 242238310 Sir Sulfur sulfite reduction NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4322.9491 8044.8784 3339.9502 4119.4891 2639.2864 5778.7761 6618.5759 2406.3028 126489.448 6951.4778 5584.6388 2198.2259 2198.2259 4465.3639 9416.2121 7675.0859 6824.554 8328.9997 7460.2268 3632.6236 3399.0688 9431.4733 3083.6513 12172.1086 6908.9283 8303.0742 2639.509 3309.7199 5088.6855 3413.0641 8844.9258 297551454 linb Organic Remediation Pesticides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 39523.6335 24480.9774 20838.4421 25944.0371 61199.1567 20884.8397 13519.9188 10990.3613 181351.9737 17077.6646 14756.9102 703673.4445 15043.9361 16943.3724 31858.3327 64105.1523 64105.1523 14542.1079 15587.7869 18729.8732 159675.8357 61783.0437 13918.8202 24214.8826 46673.2906 21505.1569 31919.7403 43222.8824 33169.483 38206.1252 16702.447 40297.6867 93984.063 18770.8586 34673.6693 77378435 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4879.24 94335.3336 4710.71 3875.2189 57158185 badh Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 9270.3827 5790.5959 3346.1879 84201.0593 4218.715 4626.6263 6612.2259 3104.1721 3104.1721 14900.955 4393.0214 85338.1221 4995.3185 3056.3762 7460.6866 2174.86 8970.5785 14006.1102 1841.049 3628.9027 74839.9994 194359406 mer Metal Homeostasis Mercury Detoxification Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 20564.4459 9007.7814 33825.7161 7860.373 4785.6798 9587.0583 7481.2706 6886.257 15761.39 5162.4993 302713.4427 9278.1265 20433.2465 10082.3461 11091.9447 11091.9447 8642.4485 26604.2479 14590.0668 8193.6118 16667.3434 19532.5972 8901.741 11514.6918 23263.1732 6625.8862 28974.4357 17233.5933 19925.6721 5572.2812 36023.7591 14378.2483 6023.5721 10435.9895 88184564 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 28205.1928 5309.3552 6390.7977 7071.4038 3967.5516 51351.0827 15440.4503 17585.3512 15132.6865 129163.1404 9918.2292 22347.7904 59149.0851 13988.8429 13988.8429 9654.755 20862.5135 13855.7811 21398.3494 10487.1106 12576.4753 12941.0428 10201.3701 10626.8436 26723.9293 61640.6903 9100.6562 16658.6808 3751.7942 9803.7605 12259.1609 65389.1168 19643.9044 88702209 arylest Organic Remediation Aromatics Other aromatics Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 26405.2266 13871.551 8005.055 28153.0213 9130.6742 10315.3164 9930.4322 12459.2292 17034.0212 17274.9696 25863.4957 563957.5797 19833.2932 19790.8028 26637.9047 38674.2248 38674.2248 6627.0557 51980.1521 16857.3337 21900.2122 73177.1733 110643.6436 12589.6887 17300.6715 29378.1225 16965.3637 47818.2629 21482.7093 60750.7283 22289.8415 18074.3638 19214.0345 22162.1308 37340.5907 169117870 mer Metal Homeostasis Mercury Detoxification uncultured organism 31563.5141 31384.6229 41148.1297 22444.078 12795.6899 12705.1626 357447.3648 13700.0035 32459.5538 37432.6687 50242.0677 945165.7848 40731.0306 43891.4753 91740.1686 39875.0744 39875.0744 87543.1972 117895.8174 57239.5399 33891.4584 52076.5327 39708.4551 32842.9286 53271.9159 146270.5496 105566.0239 92570.9743 50470.8067 47906.2777 405478.7626 50217.885 58143.3154 155326.4671 248685.6968 9106527 cysI Sulfur Other NA Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 14122.18375 12511 4196.6677 15757.839 18052.3268 149598.5233 9682.0128 7127.56195 7127.56195 5102.26395 12069.41515 8615.47125 7536.6403 16864.9363 17061.2861 12069.2239 14563.3495 14796.00975 8139.8043 19600.1347 7012.7137 338231788 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 35656.084 1973.3476 4311.0246 6673.3672 65757.044 4257.7591 6691.6416 13535.7993 7207.7689 4102.0983 5847.7165 15175.0353 2637.3328 2866.3669 6690.9825 3140.2105 10731.5164 5466.2735 5995.1577 2262.3777 4209.4409 3493.0458 2676.6174 118439049 tktA Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 12238.5532 8333.4105 34275.7379 11803.0338 5092.9247 11523.7778 10450.2508 3911.1833 12130.4879 8868.2103 7600.0252 2916847.4865 9637.4332 11664.76 5973.2513 4264.9692 4264.9692 8852.5812 15239.9689 11979.2667 16215.2895 11604.4398 16959.3199 5505.7402 6565.4202 15655.9422 6532.6488 22006.0271 9659.3005 15326.1555 11651.5079 5980.4244 8292.3331 7333.5438 15781.0052 383645576 sdsa Organic Remediation Others NA Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 5199.4675 4208.2281 34216.1257 6573.0883 2622.1361 4631.2454 11318.3735 6157.4001 17111.6568 98869.3623 5191.3923 6078.2828 6136.0801 5754.7021 5754.7021 4471.0216 9233.7879 6486.4385 4968.3879 9113.2699 5695.9966 3398.9941 5934.9127 11899.6637 5271.647 14948.7766 8270.3498 9450.9975 3483.1325 4900.8764 4581.2418 2750.2963 4941.2549 399234178 aln Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 15914.5705 15775.5279 4511.1718 9639.7871 5059.8131 7715.8704 7738.109 5856.4284 17853.221 10782.5499 242502.5425 6057.0047 4816.3667 8040.7461 6762.7705 6762.7705 9845.4174 18796.2796 5757.3789 21689.0292 17038.1478 132497.6456 6265.219 19520.7671 10270.6289 6476.4441 25638.6234 11264.3886 9611.8866 15010.3729 12821.7211 13248.3241 9422.7549 41163.5196 40253087 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7207.2001 11480.042 5609.8342 16109.7122 3071.4822 5351.6184 7672.3041 4307.2159 110531.3659 8448.5814 6596.6548 6735.8185 3673.4301 3673.4301 3925.8794 11876.3095 7258.2965 15235.4834 9578.0961 12691.6867 2904.8521 3422.866 8332.2345 2991.4615 15040.2425 5088.5116 9664.3852 3069.487 5192.2614 7039.0711 4037.4402 12997.1423 298509782 arra Metal Homeostasis Arsenic Detoxification Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 5885.9993 4682.8278 22577.9204 8846.6112 4924.059 5185.013 3458.5043 5280.8196 6815.167 2555.3743 197110.4631 11426.1246 8015.2271 13517.0972 6986.568 6986.568 3832.2551 13048.4505 9294.3572 3588.0827 6943.7985 11327.7768 3386.6203 5203.4066 13351.1327 3425.7177 14152.5159 6049.144 9109.9199 4114.3675 4949.9563 5964.7246 3334.6237 7513.214 359362756 dehh Organic Remediation Chlorinated solvents NA Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 91859.2221 13316.9592 16955.4213 21383.0511 13607.1058 12642.3763 23136.5887 62021.743 12273.6194 27111.1048 99917.5587 26211.2793 510950.9144 36007.373 193682.3299 45223.9417 51361.5039 51361.5039 197894.5184 69130.5818 21095.5861 27194.0853 38950.1763 298342.2457 24238.0387 25019.0067 35362.9845 17187.8282 59856.4247 58847.6988 35653.8978 26418.2954 36106.7999 40114.8356 44969.4375 49101.0188 120404318 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 4721.1116 5148.1395 340003220 ara Carbon Cycling Carbon degradation Hemicellulose Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 19471.6765 11384.4047 4492.0407 3106.664 3463.6816 3463.6816 4340.5025 6840.7844 19794.0852 2899.9553 3808.787 7222.3189 5399.7756 2681.6526 3902.4364 3349.8548 371486286 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7362.2943 113657.0757 3817.4468 4258.251 2861.2101 61727.2102 5649.9009 4177.0147 5018.9917 8091.9504 5618.4994 3733.3995 3988.7068 4116.5925 3701.5954 7300.0585 30011.9486 19200.0427 5401.6549 3977.8166 3804.5634 3925.1864 6436.4895 4672.5717 374413727 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4235.7568 1940.1958 5686.2814 3938.3225 345126040 narb Nitrogen Assimilatory N reduction NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 8071.9926 18726.8024 58728.4003 1884.2066 3614.0665 9476.3541 9735.8534 313798.7626 7038.1412 10378.5689 60265.8428 21121.8741 21121.8741 4912.7106 8412.3859 27196.6946 13962.9362 36422.687 4383.8117 6539.5373 6878.9836 4706.4667 19946.5571 9284.4948 11618.351 3465.3889 8773.9164 9220.0271 5333.8184 34114.8833 63003137 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 32552.6519 22530.8976 29294.226 14013.174 30378.6163 20670.5968 13294.2863 39596.6644 24468.0803 27976.6881 32044.2986 440409.5513 22625.6179 17302.28 22994.8956 29831.3842 29831.3842 41201.9714 32095.8038 16816.9995 24225.7795 25907.0746 20165.6331 16018.2879 94750.1349 30527.884 22393.0237 62408.4772 36821.5377 30661.2057 13954.0187 21475.6492 44641.9312 18275.8567 24155.1496 219850348 phn Organic Remediation Herbicides related compound NA Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 17110.9203 14848.0684 25091.805 56041.5199 51690.3953 35061.1997 12055.1114 7753.2786 19033.2736 16784.0908 9753.1792 373457.5074 20331.6368 17424.7248 18430.8725 14266.7043 14266.7043 14323.2595 24306.6029 18347.4458 24617.0006 37224.3313 39396.1131 7567.2202 11557.9146 28174.5343 6240.6039 38278.2727 22136.7391 30391.1471 8590.0651 12191.3397 18294.0639 11090.3161 20430.4574 328843317 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 17382.3745 12340.338 19944.6681 33673.3514 7343.8629 6701.5115 25935.4875 12203.3259 19180.7784 10359.585 8840.5769 350098.0617 24382.6541 16496.549 13551.2014 18091.2081 18091.2081 11172.2318 28881.3613 15925.0667 9557.1521 25872.066 289249.0665 17879.7001 9026.394 18134.2464 6946.1788 31642.7174 31223.6497 27315.553 11142.7921 18421.5097 15635.273 5560.186 18772.053 126035175 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 4817.7879 212527864 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 346644.1891 158878.8171 71931.3498 74443.2279 93522.6582 18781.7864 64033.5666 81729.7665 74880.2008 83519.5938 96324.2643 93174.9526 1281932.3423 94823.655 88375.3915 72839.9469 91107.6514 91107.6514 102047.2 94926.9024 48937.5741 55130.6779 87636.5011 109133.5849 46317.804 45118.0748 115804.3364 47797.933 134553.917 120545.7434 90514.2352 30728.6359 97458.6252 61842.1376 53234.0866 94339.0846 19703648 nifh Nitrogen Nitrogen fixation NA Fusobacterium nucleatum subsp. nucleatum ATCC 25586 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium nucleatum; 7102.7866 5060.7826 256768.902 4460.6642 2406.3055 4778.4749 6114.5901 4019.0516 100907.0657 4843.3143 4868.1665 4321.9531 12650.6113 7257.2169 33592.6084 10804.0671 11469.6065 3333.9081 4374.0489 10113.5602 3089.3136 16873.3095 6631.8775 11484.5326 3462.6533 7500.3659 6863.8154 2974.2138 13465.9833 2895862 phospholipase_B_fungi virulence degradation NA Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 16347.3031 11823.363 1895.6785 3683.7144 8400.8087 6773.2016 9435.5716 5762.6262 658194.7979 6376.5702 15713.0026 4641.2838 5950.4178 5950.4178 3820.9539 10253.8876 48376.36 6567.6767 14518.755 4961.3948 7007.7457 6294.23 7240.0585 4660.8157 20213.4946 10493.4038 13242.8303 3135.8015 19299.1426 24838.3768 7104.8856 5448.3311 257867825 amyA Carbon Cycling Carbon degradation Starch Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 14457.0771 4204.439 3662.3659 7685.265 65415.6966 5782.608 4710.8751 3584.6337 82031.1394 5971.7815 8036.7504 4900.3879 9398.4355 9398.4355 3318.1428 8428.8838 6203.6633 6854.4156 5608.7544 2533.6764 3565.6712 9046.5547 5548.2277 13737.4027 9484.5291 12223.2182 7606.2783 7036.8314 12355.1482 3651.3506 8434.2891 359800461 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 6053.9021 7674.1973 2580.4494 4624.4134 4240.8237 4852.635 2859.2976 64236.971 5013.2062 14058.7783 5099.8514 5099.8514 9906.0717 10003.8809 3994.3178 3675.8411 8609.9202 2940.6277 5113.918 5571.1232 3325.495 8819.3576 4954.6601 8033.7984 2081.8689 4786.3931 3710.5753 3898.3929 12945.303 10863143 nifh Nitrogen Nitrogen fixation NA marine stromatolite eubacterium HB(0697) A101A superkingdom:Bacteria; 44371.1366 75703.86 32621.9007 35088.7697 30620.0347 6855.0968 25157.1727 25814.1486 22876.7888 22913.0839 24190.6628 19400.2456 779111.1351 64995.6884 62469.2583 28002.7161 14623.3938 14623.3938 24063.8746 30715.8093 25368.2429 33132.9833 33142.4012 64950.8641 15729.5523 13165.8272 31506.4173 14192.0177 56313.5767 23591.0527 28795.4498 15737.8907 18447.0283 20746.3309 19019.6063 32393.0985 145573242 protease_serine_fungi Carbon Cycling Carbon degradation protein Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 46870.0182 19176.8539 19317.0643 5857.1371 18955.2224 12299.5436 11354.3826 18553.3351 19150.7807 165212.5658 24628.6015 84521.34425 17117.397 50564.158 50564.158 48580.6828 6708.75055 20128.3802 22655.9634 16436.6255 32082.5659 23704.6255 17052.1087 13145.2049 20053.4835 10074.60775 157679028 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16067.3273 5738.407 5098.9718 6505.5887 5548.6333 3765.4344 2922.1495 2276.7202 148547362 amie Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 134443.9843 19094.5034 70518.833 51799.0509 91252.8605 16760.2568 87921.8911 63348.0623 42389.2327 61937.524 98160.7315 63548.4835 1256266.4099 118138.8223 101617.4268 111434.7072 101508.2844 101508.2844 43127.2553 139891.9982 51188.3949 89207.993 162800.8762 107116.206 56564.9207 45624.8092 135223.5857 46365.178 104683.6832 50379.6555 98193.4127 37721.5095 67783.8528 104340.2871 210418.5592 109341.3701 15890595 norb Nitrogen Denitrification NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 11417.5561 5773.3741 15501.0176 10763.5363 11369.4562 6669.9063 24926.7581 9092.6431 7062.4096 801441.2339 12042.6105 15826.2997 18576.6315 13112.6924 13112.6924 12186.4117 22142.5488 12103.7165 16066.5817 15598.8785 15603.7013 7811.2491 9018.4956 48468.2261 7831.8874 27933.2238 15700.1085 35972.9715 10271.0119 10097.0937 12898.942 10035.4399 15737.1659 46850308 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3687.741 15005.6084 45498.9575 8717.5418 5405.1769 12110.1787 7301.4163 11156.1404 8581.8383 207238.2368 14316.6549 37788.7166 137559.3598 23083.1291 23083.1291 13690.3243 12691.6677 10416.3782 187549.3536 9126.0571 5555.5033 33354.3233 9712.2275 23536.9694 11822.742 23852.1199 18250.3758 18201.8994 9776.516 13919.3492 13620.0969 4995.0229 8578.5618 26989095 cysI Sulfur Other NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4739.352 4952.1667 4823.8034 3024.9064 2434.4344 16957.28 11583.4157 8460.4625 4396.1508 6220.0752 3702.8174 3702.8174 3799.154 3637.2672 6598.7913 120339.106 6513.4007 5517.2924 6452.1121 6588.1273 10708.705 13388.1644 359254216 ara Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 25435.819 26059.3786 18179.0832 61464.2572 17674.6426 17165.7694 19397.5199 8847.9872 30024.0903 37474.1306 21435.9427 834075.0555 21081.9215 30426.3845 18494.2918 17158.4107 17158.4107 22965.1863 42642.1008 25310.3095 17178.8663 28441.0611 30851.8604 7701.4298 16289.9196 31108.6211 96876.3334 64889.4301 163417.5121 42537.8388 10439.2497 20363.4739 29686.6733 18767.2987 36704.4235 33568304 chrr Metal Homeostasis Chromium Detoxification Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 43943.5227 11482.252 14413.5984 22765.6199 15720.7922 10221.9094 17396.2968 23709.8221 15782.1538 32639.7157 36813.2911 222260.0981 13585.0659 103367.2941 18567.6552 43637.282 43637.282 46710.7114 34462.3988 27158.7196 21652.2785 47592.0477 36472.1812 13348.6894 9639.5124 24704.3399 35975.9824 55449.8141 29113.213 63311.4162 19831.5817 23843.2732 30262.081 13165.3995 18880.088 157146987 cda Carbon Cycling Carbon degradation Starch Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 5621.3868 9698.9639 33071.5039 8620.3147 3796.315 7996.7226 2012.9737 34551.977 11259.0467 6579.2659 181209.9465 6704.865 10147.0616 9683.6476 8173.3816 8173.3816 3391.9368 16853.2708 13793.1942 4923.7034 4737.8752 3295.911 44551.7027 14283.4705 3299.7762 24893.2441 15730.3711 17796.1164 4163.4937 53145.3834 36631.9367 3543.8716 6182.5891 119955331 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 28138.0405 17316.6048 29217.4397 24600.9364 84907.2311 86230.2758 13469.1346 20314.4031 43052.5301 72254.5254 33320.1691 81184.3366 1899152.8907 67369.4901 37101.6278 54335.0145 33939.2714 33939.2714 19649.3399 37468.3846 18161.1306 35372.6753 23336.9232 28290.7189 56078.2774 36919.984 65011.483 14412.2179 73584.6403 61749.066 130231.8164 13658.4876 28766.1018 26651.6491 10800.2765 16356.4105 374704249 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9777.5125 49165.8514 4844.5186 3341.3956 8136.9082 6780.3116 9022.2895 7811.6764 22509.0864 112123.1027 9765.0813 59938.1163 14752.1886 14752.1886 20011.0463 7621.3654 7299.3688 35398.6211 4763.9872 7024.4221 5332.03 9419.9062 14038.0823 14463.2729 14628.8133 9093.3907 7597.3111 5745.7631 10158.0594 8374.5084 238698912 arsc Metal Homeostasis Arsenic Detoxification Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 3996.7118 5318.4742 4981.7039 2726.4735 3215.8374 3869.7972 4451.3946 4614.815 5451.812 7317.8522 6565.4085 4686.552 7251.03 6550.382 2604.7959 3330.8384 7372.5102 12861.3215 4070.0127 7549.541 2628.4239 4597.4167 3281.432 2921.6019 7606.2344 87289185 dehh109 Organic Remediation Chlorinated solvents NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 7071.3967 7168.253 5106.7473 5679.9325 3207.876 5657.3387 7769.0904 3771.4602 92535.6287 8989.2634 7155.6255 4166.5212 2309.9104 2309.9104 5658.2489 13001.4754 9201.1536 10489.8138 7830.2139 8480.5087 4377.9085 6271.3969 10492.3053 4687.1197 15061.9435 9238.5638 9321.6249 3972.1829 5385.9966 7527.3384 4648.6241 10234.905 170721195 nbzc Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 68008.6428 22593.0961 998331.4015 310327.5175 14913.2994 6576.3542 37938.588 17956.8738 99780.4091 59121.9572 58484.4151 444793.1306 19674.5295 44106.8756 74539.4629 104019.4293 104019.4293 107777.9988 49120.211 31644.3419 30438.5777 369990.624 39387.1442 49587.856 38525.5201 34199.358 63239.4081 92038.1889 75365.1452 68560.068 42241.5454 124442.1567 85367.0478 16494.7825 61727.7069 323365258 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4485.6547 8228.3215 1721.7909 2123.2163 2700.8674 140341.6411 69206.6741 5552.143 3428.0128 5050.3311 8428.2212 4408.8192 4573.7595 2597.2261 3623.17 11500.8147 7219.1068 6543.6191 3762.4326 4614.6899 2812.5995 9044.5095 171465252 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5882.2046 16496.4467 3350.0628 3699.7325 2031.108 2031.108 7395.7336 3019.1216 4586.6438 6553.6002 2048.255 3706.7374 94470931 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18859.4412 254783.5718 13311.2999 8711.3922 11310.3261 11923.7683 9559.77 9962.1415 16907.4586 6028.7813 159179.7762 14470.5398 14832.389 10295.6095 7972.8273 7972.8273 7712.8378 25451.6994 10590.6475 14431.0508 11854.9771 9302.2677 7576.2036 8134.0538 18434.5775 6790.4662 27196.6466 14347.7077 17610.901 10218.8282 9163.9286 13619.6218 8402.5057 15207.2114 226346720 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 83589.9344 29915.9486 66143.6137 63978.0856 34550.8626 153731.0341 49677.6533 32081.7095 66274.0971 82122.7642 74503.5821 1453690.1382 145268.6866 94748.8829 95754.8703 405695.4254 405695.4254 186445.413 94361.4964 41924.9025 145256.372 297284.993 146872.245 56033.8933 40348.1867 105103.3075 42587.1921 358298.4395 54439.6468 69810.3577 30348.1849 80034.2635 78340.223 50013.2678 640566.2345 24421289 nirs Nitrogen Denitrification NA uncultured organism 4873.6433 2207.3145 12074.8582 118924.9434 10703.8153 6212.2135 2167.262 2890.5762 6303.7159 9813.4626 10830.0823 2031.6227 2971.5813 5440.2224 119674208 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 15547.079 62739.2738 32127.0951 20812.3479 5368.1228 21457.3818 16876.9215 15737.7058 16594.4167 22361.0012 26775.9733 621013.4326 18286.6008 18968.5477 69953.5455 42552.1815 42552.1815 152195.7058 23408.5113 48257.4665 504809.9869 17135.2397 21655.2395 6633.7706 16058.6046 33275.5848 8829.1909 62295.3156 23616.4796 25249.3076 22261.3771 12457.5541 19382.5717 7411.4921 24148.5461 226226488 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 23733.6653 16536.0936 10046.6516 81400.023 8867.3725 5130.9132 24564.8806 10828.8851 17962.8041 99122.9343 15558.4224 476679.8571 125366.2322 29384.9892 24687.8155 11838.1567 11838.1567 16053.5359 42818.5135 25914.5404 12727.712 13188.7061 24934.8808 5420.8564 11654.7632 37615.0541 22481.9249 51713.7842 33681.1267 35363.5831 10473.618 32958.4692 26123.1786 8792.5739 100393.5285 54302010 dmsa Organic Remediation Others NA Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 42257.4556 36168.1026 119957.6001 29741.2968 129753.0525 50747.7672 47868.8354 18982.443 27471.3267 32763.6362 52171.4904 25926.9928 1048420.7258 31710.5567 42697.1854 27081.3356 65693.7306 65693.7306 15393.7043 38096.4903 25062.7877 29572.3479 331396.7765 52839.955 135925.1883 70422.4087 35270.571 33212.3823 72856.5847 27517.9218 37746.0318 22950.5235 28109.4642 30801.8189 14169.7539 60282.5773 329956217 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 18530.2616 10772.5167 9571.0019 9570.0592 11314.2523 9738.8012 6882.7904 13118.3546 15756.4665 15269.6888 299765.0048 12888.141 12679.9407 13797.3227 28462.5813 28462.5813 15216.915 44012.5322 11968.3267 15017.252 27785.7977 11529.0566 12306.5347 12684.2417 13864.1474 24285.7663 71636.4466 8267.1855 20200.8564 9138.5257 12615.6897 28313.4658 10116.6817 12795.0397 158424800 nfsa_2 Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 20018.1104 28273.2409 9644.8792 29133.3482 11980.6557 10106.0367 11165.7388 23014.0011 12090.0222 17833.9825 7364.5422 335817.8453 14067.4498 22079.0959 22407.6702 12136.5206 12136.5206 7549.1045 24242.6332 20981.8008 27107.0242 13288.3918 16353.3429 16574.1606 8759.1273 28099.9709 6759.2084 140162.1409 43668.2195 20062.7709 7272.7564 13157.4863 17150.9502 12798.3853 15318.2973 169289 mnp Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 10701.8914 72524.5233 15797.6617 6926.4992 4774.849 2406.4139 1999.6341 4766.8088 10539.4562 8684.2145 66263.4945 5027.5393 9494.2611 8009.6313 11380.455 11380.455 3169.1509 8725.7984 5511.2295 10023.4038 34645.3414 3880.8368 12950.1397 4133.5908 8284.866 2409.3753 17414.8241 11084.5982 8808.486 2718.2548 4364.2661 16952.8678 2453.2579 4803.3961 358011591 cmci Organic Remediation Aromatics Other aromatics Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4237.5724 423859.9971 78525.3196 9247.9707 1772.8904 299743826 glucoamylase Carbon Cycling Carbon degradation Starch Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 6744.2795 20958.0948 4310.5754 7457.9931 3993.631 6111.4752 2110.4882 11473.6146 7118.5264 60728.7303 9691.3148 7767.8481 11140.7041 16935.5972 16935.5972 9517.1481 12045.4282 6233.8114 7698.7508 18210.0062 7719.8773 5233.0278 5666.573 10877.3425 3810.5706 14956.6477 10544.8499 11820.4692 4780.3306 14269.2967 9170.0789 3534.1635 12727.4458 126250025 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 10366.2845 21531.4837 17085.641 11880.2355 54562.4613 19269.7462 26836.488 10413.867 9491.7311 6308.6931 19442.5749 9633.5342 144648.3723 12577.5899 15787.2988 21419.0953 10667.3833 10667.3833 4849.9529 13537.1178 13741.5393 9671.0461 22365.4895 46283.4108 8666.0569 7048.2886 14322.6732 10898.7711 96553.6502 31739.3737 17662.4762 29022.1362 11673.5361 12545.1651 11931.0844 6759.8763 262204049 alkb Organic Remediation Other Hydrocarbons NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 17213.7645 15175.2406 131893.7433 27398.3641 159647.119 18411.0162 6055.4851 245017.8281 5381.1335 21232.1739 167978.4059 24315.5756 434753.3748 23399.189 43586.1045 48679.3331 44258.7147 44258.7147 17008.4933 41587.3428 25623.7202 9114.9259 16512.1865 15465.4265 9329.8566 21281.7654 37624.0863 55767.2862 83255.2253 33341.9585 39345.9103 13231.9737 21996.845 21209.2636 8965.0117 33303.144 74038364 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19662.3677 5260.4915 19745.7717 11536.2833 4209.6712 13879.5895 9904.7917 9996.6385 16871.483 10474.1534 147704.2898 14917.1996 17381.1246 10341.002 65281.5536 65281.5536 13440.3748 48089.1532 15049.9536 25787.4557 16878.4544 22498.7055 8789.2008 7107.121 24468.3236 11344.4435 34295.9544 17212.3385 19668.4107 8447.3925 13775.3941 15944.5897 11910.3126 13245.832 158110467 cdh Carbon Cycling Carbon degradation Terpenes Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3713.707 6800.8566 2428.0328 7694.3382 4295.6865 2600.1859 89045295 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 8903.7857 9614.3041 5781.7861 3245.1447 150678.0834 27605.5154 3426.9632 116698.7594 8370.1298 8119.2422 4636.9215 3549.0235 3549.0235 5088.0538 14351.3754 8796.3577 7729.6173 13848.1206 9125.8205 4221.9012 5087.5504 12713.1469 3879.26 22429.8397 10329.5795 11128.4567 5369.8425 6766.4612 6400.404 3658.0039 11316.4044 74038362 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37277.1262 2941.5705 14202.1675 89573724 endochitinase Carbon Cycling Carbon degradation Chitin Lecanicillium lecanii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Torrubiella;species:Torrubiella confragosa; 7318.4822 5786.3144 18530.0161 3321.3796 5220.1259 4637.2438 5471.0451 14624.5735 4199.1692 5619.7848 4520.7394 6239.1047 2800.5377 2869.9671 2553.2642 21705.8483 6028.1203 8299.8188 2578.2173 6599.5076 6386.3765 5997.1593 93357595 nasa Nitrogen Assimilatory N reduction NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7885.2379 9327.9714 3248.822 2715.8494 5580.8487 4801.5782 3817.4654 4394.0803 4347.6702 3676.3281 3676.3281 3531.0412 7004.3296 4876.707 5258.8658 7327.0162 3084.6462 3323.1358 9477.0024 5342.4444 13364.1089 16039.946 9799.4545 4258.1607 9819.9489 4425.3717 223985317 dsra Sulfur sulfite reduction NA Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 27707.8631 60257.7705 2432.9118 2929.821 7980.0523 4033.2231 4033.2231 3835.4525 5124.3105 18603.2728 212171406 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. S9-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 4894.4332 30042.976 8723.231 9704.5455 340781387 PRI Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 51827.5476 25790.7358 276725.8565 9233.8552 14897.2819 12011.5955 11362.7099 26001.3007 18092.6958 37917.5308 204115.4117 13869.1594 28680.1986 27516.1393 55124.266 55124.266 29062.0313 88212.3201 17773.8345 327652.9147 26652.0642 19638.247 36962.3748 14095.798 17779.4401 25998.5221 79425.731 35825.8646 46831.1705 11013.3295 17998.1337 37398.4603 8665.6306 28240.1437 329940633 linb Organic Remediation Pesticides related compound NA Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 35855.4038 147393.3714 13762.8864 53722.5391 8095.7684 18714.8435 39859.4971 7426.8783 15153.0989 31556.7034 23939.3456 834916.6643 15586.2583 60680.4312 62434.9339 33788.5747 33788.5747 12862.3136 136900.3958 17478.7635 17266.9958 53552.1753 44259.5343 16921.4885 70824.5516 47595.384 29909.2656 48093.0875 58386.4274 92251.2409 8649.1483 19752.8088 24605.6798 26592.1208 192342.6225 165925671 cysI Sulfur Other NA Yersinia pestis biovar Orientalis str. F1991016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 6058.2647 5827.561 5827.561 3852.421 2822.3997 254785798 arylest Organic Remediation Aromatics Other aromatics Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 58284.0638 11757.0207 33573.733 52711.0954 24147.7895 11850.5198 21040.8807 36080.7492 14805.6596 22760.5213 48088.2064 28921.9065 655492.1034 32698.0526 35311.42 39173.0145 19392.5506 19392.5506 62563.4402 42325.1631 33485.9958 48123.3531 49829.292 50397.6255 14975.6452 25239.7748 41739.8518 15189.2445 84870.0355 73799.1954 45106.0902 25765.0007 35059.7586 39674.5564 16764.1357 62245.1564 27352833 cysJ Sulfur Reduction NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4226.98 5408.3572 6715.0809 6611.1814 2123.8279 2726.1299 2573.6316 12916.8215 5334.7023 12452.2166 149276.7713 6945.0345 5759.1995 3747.356 3747.356 13392.8455 9170.2778 7042.4786 5524.0292 4969.5601 3010.6749 6499.5322 2912.0031 7843.9514 9578.839 8486.4922 1723.4028 13756.5544 5092.8557 2563.9911 5461.3871 328879314 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4192.5407 5509.8001 27595.2706 24241.0015 4079.4776 3793.7816 6948.7598 19532.9894 8072.2375 3935.0087 25070.9602 19275.4033 19275.4033 3129.7351 6174.574 5173.2983 27135.6631 13241.6059 7662.2835 4679.34 4393.1692 8394.9209 7659.6844 16327.2113 4460.4275 9795.4522 2429.6636 7301.1807 4429.5133 3209.3653 50542688 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 19803.1876 25102.5992 5609.8337 3473.6874 5154.8761 55999.9268 98014.617 5507.9873 6606.8843 11470.5283 5509.6268 5509.6268 9035.964 3949.7591 14134.0388 11373.9029 4084.0677 13014.2972 19591.9368 5669.1772 9418.5589 2773.3357 4646.3039 6945.7041 5537.7324 14405.5852 146404227 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4511.9802 4656.9279 2569.533 5004.7088 3243.0302 53829.8503 4773.2324 4022.6552 3777.5705 6240.1976 4807.2635 2282.4807 14462.286 2108.9769 4132.834 2980.4651 3183.3347 8561.4438 190687980 PRI Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8831.175 269095.1822 18283.3063 9405.9066 5432.6241 7477.4741 3761.8619 2958.6528 11028.1873 7901.0606 3229.743 174885.0132 6008.5601 4736.5732 5558.3401 3754.9983 3754.9983 2612.5256 7215.4665 6486.1227 5950.6688 10096.4042 6422.0663 2085.7271 3023.063 7213.7069 2168.9619 9390.4609 4821.8725 6086.1377 2612.8431 4712.0323 5955.1535 2902.8475 4881.3223 329573893 rgh Carbon Cycling Carbon degradation Pectin Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 46573.0998 23103.8768 94878.3248 69477.915 56402.5603 14214.5225 30211.9772 45250.9097 22967.6491 29318.055 47713.3695 26678.1046 1068672.0927 52478.3607 117688.287 449965.6022 31772.2825 31772.2825 25584.1679 58441.9769 33118.0247 308772.0576 48004.7338 56711.122 16066.2306 22360.1626 45796.7448 20724.4486 169962.196 44126.875 51316.129 33627.4079 29395.4134 32371.3334 17461.5992 75622.5882 299536645 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 19322.972 22933.5483 8984.4487 21778.3678 27154.0045 27718.3995 18348.236 13961.4063 13005.9137 19455.07 12272.2305 229630.9923 17516.591 13012.8289 21547.7193 15671.5781 15671.5781 14635.7358 48072.1645 31258.2577 16568.4599 52453.7855 29863.2781 8511.9933 13326.8554 22434.1182 14414.6953 50051.0403 9080.2465 21478.5793 12979.1013 19169.0827 20880.0436 13693.839 55592.778 302428962 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 304762.7056 23760.3995 152406.792 52025.1868 92210.1553 120443.7012 180619.0495 107790.9796 214775.4434 141452.7192 132167.5838 125652.6794 2010049.2672 146492.19 154655.1135 251537.3439 130567.8922 130567.8922 88462.3312 202609.2488 92880.2598 343873.4956 170175.7182 172337.9048 117531.9075 110425.2681 124869.5778 117913.3398 270144.0646 86941.1469 214755.7085 69897.3838 137980.5302 205488.5371 87953.802 252481.8172 299539022 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 18331.9563 38369.638 238750148 alginase Carbon Cycling Carbon degradation Alginate Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 4391.3631 5393.267 4444.802 3942.845 7642.4711 4623.3245 5353.7274 7418.5844 48521.7123 91576.248 6715.622 7304.9472 4618.8543 2059.5263 2059.5263 3588.4575 13121.6599 10612.4842 6866.4241 7469.8996 9219.9708 3062.4458 4066.4298 9526.9768 2766.2436 15232.66 4254.2315 13020.5303 3562.9179 5281.5869 4817.252 2870.728 8443.1857 225684630 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7010.6097 22254.7624 4362.6443 3111.43755 3081.9992 66275.1541 5638.0686 4250.1729 4250.1729 6677.7397 4755.9224 2720.4749 2167.6324 5745.2307 4376.9417 8296.965 4238.7547 23196.7117 2805.2704 4228.3333 12312.6864 239904998 dsra Sulfur sulfite reduction NA Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 6235.5613 6203.5447 41196.8429 4986.5041 2440.4594 5192.7904 5730.5963 4823.4945 4823.4945 2755.7886 6363.3674 5086.9725 3114.3357 2567.6541 5935.5256 8951.7657 12550.6559 6448.0439 2404.0417 3794.4842 4681.6987 238715140 xyla Carbon Cycling Carbon degradation Hemicellulose Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 59059.8114 47403.1133 542076.2694 81495.071 58384.3403 19688.2511 19665.1253 30370.5756 75073.9904 21222.8541 23821.8548 13857.5468 318638.8721 18348.5696 36843.803 37781.5548 91399.2724 91399.2724 468503.3229 25722.3961 15496.786 22409.3386 23393.6526 20960.7373 22835.178 19356.9339 37651.5149 13117.2268 145453.9074 24224.2682 36735.362 14954.5957 20766.4967 14049.5782 8400.5279 60570.9566 336010884 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 19431.1129 6252.1852 49651.8024 29034.6475 9921.8748 3978.8256 9926.0362 6976.0607 10632.0433 5138.7155 5138.7155 8892.128 12074.855 4381.1492 7605.2346 5853.7046 4063.0713 4437.4067 8343.8448 4781.8035 29252.4448 10974.4398 10086.1223 5866.012 8837.1218 53160.4943 5075.9478 7464.3645 76809670 cysI Sulfur Other NA Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 162144.9171 40624.9898 108027.3238 450643.7156 154362.657 57123.8234 153673.2067 171506.0072 108966.3226 229961.2728 149938.2466 109759.3767 2411871.9323 156503.9144 457698.5734 153099.9473 135341.5098 135341.5098 82482.6319 132749.2061 157647.178 145539.2286 163998.7037 145614.3494 76124.31 109695.7986 117101.6362 182577.2563 300909.0753 105456.8448 206029.6832 90906.6603 91493.8099 85853.7259 133986.1423 127961.6085 114800413 nirb Nitrogen Assimilatory N reduction NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 10919.4952 16525.5295 8136.3953 26059.7968 15700.1067 10906.2411 21124.1158 3223.929 31766.1778 9659.7839 108138.8449 245627.3575 13964.4232 11125.5404 15220.7631 9688.312 9688.312 9313.6858 24645.048 11145.5029 10489.6334 12998.2083 39247.1686 6034.1701 8332.4156 21861.6168 8374.6823 54530.5881 12967.561 22942.0567 12368.2975 11430.0254 12021.0451 6969.5107 39490.9328 56678352 rd Organic Remediation Chlorinated solvents NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 11369.1555 28745.4169 21656.1491 123838.7486 73764.2385 8223.6299 20392.566 3916.2271 10480.3804 17722.3086 18408.5204 393913.3908 26828.434 34378.4834 29652.3496 22641.4018 22641.4018 13825.3217 30594.7232 45392.6523 7787.2614 11656.706 167799.7535 8233.6099 20384.8862 55305.3213 117004.2702 56084.3531 37400.8334 43140.4536 17836.3778 24753.5715 17803.5471 44252.4148 11166.2518 54309970 arylest Organic Remediation Aromatics Other aromatics Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4674.6974 5576.8643 18153.2436 15624.0652 2556.3432 2438.9153 5386.2928 4608.6162 6123.0672 173446.5167 3451.4878 3764.4973 4149.4775 2033.3709 2033.3709 6390.279 8218.0171 6200.9957 4199.7741 13460.0041 7979.5463 2391.5148 5013.4845 2437.0347 14038.6212 5389.5945 2132.5738 5172.1781 4006.2245 2147.1646 5278.9602 384921575 phn Organic Remediation Herbicides related compound NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 26824.4124 18379.9425 18592.1433 21122.1457 18284.6881 12177.0226 21100.797 36935.676 16525.6367 22560.1919 22147.102 13808.8782 31496.2638 26056.6399 32382.8703 52778.1237 22508.2545 22508.2545 17413.5625 35881.3532 71705.6508 56004.5 31360.4112 34607.2259 18512.1243 15338.0011 34128.2687 17633.0472 61098.7575 32021.3503 35585.607 16788.7647 16483.0016 49840.1266 13136.7544 40072.956 198272140 pula Carbon Cycling Carbon degradation Starch Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 8432.07655 61594.3722 9753.40915 11335.1499 6621.6495 9056.6867 177548.3542 13296.66485 11710.9186 7276.59785 15648.9134 10013.7502 14785.0729 13949.1608 8212.8825 7327.70535 13056.01295 24854.8087 12885.66275 20824.8894 11312.7896 13637.29975 220911259 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 30038.7216 7215.7518 4776.6957 1883.0177 15946.6647 9059.4332 23340.9345 5593.1674 943839.1168 3938.1884 6296.6854 5691.57665 3898.3016 3898.3016 7258.4806 19951.7147 21103.2651 23285.0094 47077.593 89155.6878 30493.2683 5880.2884 6118.7709 20053.0591 36918.9614 9537.2017 34292.7205 7731.5883 7126.0073 16248.4512 3856.2772 74500.723 179344945 Sir Sulfur sulfite reduction NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 16320.6398 6496.2449 94025.50985 5740.29145 8263.6044 7953.6103 6277.71295 65441.06385 7007.5145 12969.4215 14010.1589 14010.1589 7476.7841 13718.2388 4535.77235 11725.58625 10328.23655 13606.6455 8926.06525 7770.4471 10505.8096 25929.42185 9718.96905 90888.0644 6101.11415 16258.3886 10934.42625 15382.40675 9227.7776 114767012 soxY Sulfur Sulfur Oxidation NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 3595.6619 2966.3885 4266.519 14643.46 3474.552 5888.8938 4810.1527 4810.1527 3511.9658 8842.3954 4058.8742 5546.8946 4482.3676 5011.5994 5229.6647 3712.6004 11388.8111 5885.532 7352.0938 6398.2845 3817.887 6707.6943 83580.9931 9934.9774 300361722 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus gasseri JV-V03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 4330.0815 3666.4662 7284.1962 2456.9862 3640.4212 5079.2621 63812.7843 14194.6874 3959.7147 4384.4172 2751.4395 10004.2087 4921.4552 7186.1701 4202.8281 7055.2974 3158.4762 3287.8214 5005.3453 9745.213 12228.1829 4464.5944 15476.3427 2179.4172 10995.1216 4941.7009 320009107 adpb Organic Remediation Pesticides related compound NA Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 8566.0451 9111.6487 3950.2352 2907.4783 5031.3052 11118.6707 4192.7541 2963.9447 4654.2894 5261.0445 4021.7209 4699.1626 2065.0055 29942.6129 146408830 terc Metal Homeostasis Tellurium Detoxification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 194623.4405 48184.3849 99762.7906 38634.6381 442369.0337 74046.9755 85601.5879 202446.6643 76249.0948 131003.0469 131468.7737 1263733.5124 88693.376 184232.7261 449485.1676 180355.8387 180355.8387 194502.6406 193531.8112 110027.7642 160048.81 368266.3905 135358.6318 81100.131 185968.8703 111094.7208 93165.7204 280240.8418 386679.1737 148344.2909 113463.1045 239123.6968 103348.2257 136099.3066 218288.9643 385701760 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. animalis ATCC 25527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 269621.1548 4369316.511 13684.9805 10499.3871 477519.988 7350.5923 22017.5761 27965.661 15628.188 17699.0759 21494.2761 63757.7902 338592.1203 38697.457 32346.0582 51344.1618 25910.0718 25910.0718 42779.1161 61363.7672 47423.0902 37069.984 73045.5864 40945.8304 22890.5286 61931.8954 29714.9272 40719.3583 58438.0922 69448.8075 42355.5127 20556.16 43915.4163 31443.5465 30550.912 117568.4635 353193791 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 164640.7806 23344.2185 23067.5576 21812.6466 5756.4628 12716.496 21491.5916 9542.7067 23777.1632 41720.71 116343.1343 557267.7809 25289.0277 43165.4944 36828.1618 54673.2777 54673.2777 14464.7516 38894.753 40540.3055 24471.1939 27978.2014 29417.6128 20835.5511 31738.0392 43055.3207 15382.2223 65476.435 28335.8145 46753.3456 15241.5117 25510.0252 37161.6442 20074.7118 40432.9261 319978951 cda Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 6887.2893 4671.1396 46067.1789 12786.1409 2671.8797 4732.6487 4597.0696 3018.9163 125903.4651 6148.7625 10111.4881 15461.8235 28605.4346 28605.4346 3888.6874 9123.4573 9822.5253 33818.5496 3823.468 14174.9611 3366.3396 12783.1276 9110.9552 12733.6969 4379.4933 4115.4741 5053.41 326331949 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 21199.6528 5608.7926 6674.5986 10271.4951 3418.1088 6899.5098 130864.0325 8031.1068 110988.9924 6873.3004 11983.0163 7257.4219 4155.0918 4155.0918 5755.9241 15976.9081 7929.9941 10522.7357 7985.5175 6355.5721 10003.1607 4548.247 12358.5683 6052.9175 16236.0786 11384.0294 11836.7348 4593.2262 6753.6621 9147.4272 6342.8982 12083.4389 375053533 urec Nitrogen Ammonification NA Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 261754.9139 51215.0187 7455.6845 1766513.9084 18802.9581 5568.706 38237.638 103910.6562 12727.4474 27214.5439 42830.3812 23981.3206 474678.3279 37684.0219 96397.0757 145802.2302 34719.3376 34719.3376 27632.4864 78142.4784 33053.2801 101491.6638 74662.6403 26358.9569 22907.3988 25544.7002 52546.3068 74492.1646 65488.5031 61768.0538 44427.1821 60103.7049 83079.8639 43148.743 23478.3082 46643.6268 302885653 rgh Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 28744.2636 14505.014 23300.4732 20236.6536 16964.5319 10429.0053 85083.9624 20214.364 16775.1701 22159.954 25479.4463 26173.5421 507099.5574 26147.3927 28263.4648 20769.7214 14153.2186 14153.2186 21699.847 31504.977 21839.4697 31327.5991 26634.4353 26567.1066 11300.7617 11691.2891 23654.303 13995.2358 159053.1145 12852.5907 24945.5973 11665.6388 15184.2632 15771.5326 18388.6558 30967.7489 291197224 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6271.4922 2024.7283 2626.6054 1962.1581 4660.3411 35819.3072 3732.6204 8877.0512 7409.7513 5295.3065 5538.3538 7108.2644 3448.3773 7376.9216 2078.321 8797.0424 6729.8155 3598.6318 4484.1403 8032.155 2036.7425 8733.4805 290745590 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 68289.8105 19186.0599 15234.7041 15814.3479 28590.7776 6490.3771 16442.9973 20447.8414 19780.205 21856.3185 20345.003 34614.3894 416697.456 41361.6019 44953.5324 93333.0893 22314.1624 22314.1624 17362.0859 39515.75 32471.2634 28089.605 159690.1976 26007.9954 21405.4715 54990.0853 87849.3595 15217.2524 105947.246 44949.6236 33672.5217 15256.127 27375.3176 49231.7506 68291.8338 50084.9142 84683382 sqr Sulfur Sulfide Oxidation NA Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 5236.7404 76314.3162 8751.3566 3215.0029 2747.0365 7057.5827 65140.284 4652.6049 5512.2041 5512.2041 3475.9302 7485.5717 5203.9872 3951.6222 7279.6795 5029.0795 2790.0953 3199.1252 110893.6269 2478.7979 10616.6202 4499.1994 6215.4569 4161.978 3550.6734 4933.822 2661.472 6839.5812 255946099 pme_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9907.6869 7809.0803 3080.2111 3852.104 5615.6108 5353.9149 3539.7991 91659.2228 7709.895 7497.9381 7165.2926 4190.1517 4190.1517 3983.5062 7681.014 4749.5753 7116.8894 6906.2154 6273.2442 3273.7602 3948.9827 9146.6993 2572.2473 10880.5803 3780.2121 6946.2649 4730.2693 3706.4697 6296.508 2664.8848 5406.3978 379988587 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 48408.0063 17599.1821 36098.2089 16009.7274 8540.1907 54647.7546 18169.8492 25428.4475 18415.1191 36747.0082 32191.4221 313897.6881 16367.7528 27809.6366 30350.0827 31434.064 31434.064 23561.5018 27143.0905 14482.3557 197320.7165 35599.1263 27275.3196 63225.1333 19735.8198 22665.3345 20016.987 100103.041 18756.3814 53137.3277 24008.0904 20181.9888 63624.979 18971.8394 30579.6226 86749912 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 176022.6806 16771.3934 180243.8589 357573.4881 157471.4215 41885.2348 126713.3859 194327.375 102535.7883 133085.7494 191776.5289 128070.4381 4523501.1323 199235.7051 297562.2041 441878.4149 174570.9977 174570.9977 108955.0806 271703.7425 152678.0685 185374.7983 594842.4492 172651.6698 100745.11 147702.897 258766.5341 164911.21 789754.5396 232226.8611 206748.0443 104303.0943 132089.0249 148735.5908 106387.4864 127122.1665 349701551 PRI Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 5759.5742 10989.9803 9139.6508 254029680 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 14615.3268 9657.5568 4719.455 3358.5011 65733.7904 42390.9572 5942.0758 185709.5249 78408.225 112373.0225 6339.0693 11847.2797 6324.5219 8829.6109 23788.386 6233.4765 7071.3907 3235.4586 3598.6004 14735.5242 26495.0408 365804242 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 47044.2363 6701.6501 7453.8105 6334.9486 10351.8321 2915.2539 3315.2259 26251.167 8020.5219 90507.033 4966.6531 9417.2528 5139.9231 4013.6501 4013.6501 4841.996 14152.8994 4526.0583 3917.7475 6329.2952 4314.2358 4014.531 6392.3706 7003.0604 6762.0112 13918.9659 15990.5274 8349.1187 4834.2873 8945.3534 16432.1147 5773.2959 7195.9581 402702278 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fragi A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 70677.9376 18111.6919 39462.4784 82707.5823 75308.4053 24862.7544 47983.8124 78084.2608 29180.2114 45195.2002 71458.6986 37656.2728 1420046.5005 65675.5233 69651.7933 62091.4062 39871.5002 39871.5002 42872.6518 185798.3114 44887.3485 65469.677 71785.3848 85156.9148 35388.1807 33595.8683 63312.272 51747.9228 93486.8173 31481.2027 60235.0048 57434.7257 38296.1843 38889.2381 25632.3542 81943.1241 309812166 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 4682.2648 2307.4971 69525.4624 4213.2395 8697.6111 5066.6143 5323.4278 9940.266 36782.4504 3852.9355 6144.5865 10438.6504 5417.8912 9012.1395 3656.9951 3849.5298 5716.073 3327.7675 7094.8928 162281561 xlnd Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 16102.4022 43033.1597 10274.5147 11983.9695 101952.3076 21664.8358 22520.94 299201.3553 16974.3583 27368.5384 48260.7996 48260.7996 6103.2402 91189.3856 12993.8784 15914.2915 12929.1468 21049.8118 32638.17075 299524730 terc Metal Homeostasis Tellurium Detoxification Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 4590.5602 298282439 ppx Phosphorus Polyphosphate degradation NA Neisseria sp. oral taxon 014 str. F0314 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 66895.1366 18970.3407 157726.7416 24790.6343 137751.3958 17227.222 22884.2386 72203.1684 24237.4174 44001.7972 54327.9124 36311.0691 1953381.5206 119760.1686 62109.4891 58653.9976 155978.0581 155978.0581 82334.151 109505.8357 73412.702 39669.0414 127868.6052 236789.9199 189514.4495 31905.2193 92952.1586 45915.0421 118381.9158 61094.8248 89566.0227 68399.0156 49863.4096 78903.5229 54856.0008 103141.4624 332694359 glucoamylase Carbon Cycling Carbon degradation Starch Acidianus hospitalis W1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus;species:Acidianus hospitalis; 8101.7249 5230.6855 13057.6076 11980.8041 3970.0159 15461.7543 4198.8506 21197.1542 8425.0132 189094.8941 16907.3343 8119.6124 13591.4922 13591.4922 2597.5161 14110.7013 4971.3942 9304.6731 8019.5442 68291.0814 5696.4077 5455.3578 8747.4153 10072.3672 14906.6634 16220.6796 4443.8082 4749.7983 7234.6938 3638.3465 397726021 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 10917.5326 6643.3672 4585.6387 7090.0553 12376.3255 6011.0653 13506.3216 12026.5029 16752.7539 116348.2964 27899.1971 81261.3536 5234.5126 11735.4731 11735.4731 6100.5142 18750.3858 6535.6166 21904.4657 12529.1481 9714.4069 3955.4445 5743.3852 9610.771 13193.2395 28143.7558 4837.2191 17676.2951 7571.0789 11404.8877 17533.8036 6400.9511 7160.1171 156049853 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4493.7305 3587.0436 3336.4671 2438.3306 3835.0829 4205.8619 2582.7279 3664.7321 4185.9269 6417.4531 4731.9729 4253.7138 6824.3964 5298.3176 9538.6538 6018.2841 5227.2034 2490.2813 2975.2852 229364572 gdh Nitrogen Ammonification NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5479.4612 15812.5769 12815.5555 2638.8116 14354.6097 2682.427 9179.7107 7861.5728 9315.0472 298066.5986 6624.6157 26885.2418 7391.8734 5841.6845 5841.6845 4258.0916 168192.2223 11162.527 7659.0036 10531.8709 10337.3431 7387.6328 11452.0753 9567.6172 7495.5542 22937.8314 9281.8826 14269.4452 4514.973 10097.4809 11334.2384 6723.0118 10752.6722 302479762 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 6909.6186 5449.3071 6019.1145 18947.2393 9500.7771 5427.0476 4549.168 3130.7269 4006.3873 6696.0042 4512.482 144595.2859 8474.115 5496.6069 6334.2552 4547.6744 4547.6744 3252.4962 13163.0805 10291.7025 6944.422 7980.7519 10055.7306 4754.7838 5255.5009 7972.7116 4143.3014 8851.1494 7734.9769 10700.0587 4378.1759 5384.1472 4935.9489 4140.9311 5377.0404 37201588 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4815.3997 3970.5996 5005.2827 2877.4329 5307.6395 6745.8802 3822.2352 108354.0095 7124.5851 7186.0406 2551.2745 2551.2745 2531.771 12076.6056 7091.3309 4398.1011 4672.213 7661.6984 3071.9245 4014.0288 9004.3083 24467.7807 36498.8714 3938.6776 9908.6154 4791.5322 4301.0398 12569.5296 2209.7421 254454805 dmdA Sulfur DMSP degradation NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 23283.7317 21617.5664 11924.2747 7893.0496 15105.8985 28103.3481 20720.5511 14656.6686 18649.1094 28829.3396 14676.5849 510682.6888 76400.1223 66427.8574 301068.8379 11177.0382 11177.0382 13391.3894 36181.1341 21344.9204 340013.1237 21801.4404 11854.5588 7933.7117 19228.7102 23201.3284 18649.19 43387.7418 24073.5198 25481.9729 9505.9448 24203.9882 18973.2244 11286.5918 55681.6301 381202148 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 25264.7366 13644.8659 27806.2669 3397.0582 11867.8416 6913.6477 19662.1508 13511.7131 9960.7238 155844.6906 11727.774 17938.0038 9359.7039 8358.6644 8358.6644 9418.8273 15530.8134 20020.4657 26968.7684 7142.764 7981.6373 3350.6455 14006.5101 20027.7705 7428.0976 19025.7567 18040.4419 18931.4522 6708.3873 12779.0709 18433.4098 8179.0246 15685.1814 50842592 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5225.3027 170169.5845 5380.709 2624.2747 12131.6233 3402.4695 3636.3293 4563.9274 5273.5673 4258.3765 6119.4606 4294.633 2467.9985 2521.6851 4982.5421 5482.3538 2657.5202 2949.032 4600.4965 8156.552 359818446 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 15905.4509 12401.9975 15331.4153 85938.4672 19294.808 4459.564 12423.4365 3906.9524 14568.7721 15201.1552 11496.8209 256274.7557 22300.8383 84963.6983 27420.776 16042.6704 16042.6704 11223.2314 32639.8375 56739.5326 14265.0518 9249.3471 51942.7973 13322.0855 25252.6729 78801.4919 15534.8776 154488.4871 52250.4323 47194.9706 20082.0052 22829.6019 9043.3518 9332.4143 6648.124 209401768 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33037.168 13004.1388 108666.1152 24669.3216 15284.9403 27539.1383 33133.9359 72103.7442 29021.3107 153887.0023 27595.7065 974775.7869 41882.2818 55932.1755 50641.0869 22359.4566 22359.4566 34599.7062 45383.2936 20396.9921 19451.8058 35545.7475 25952.0795 23267.3949 34991.7194 20316.5977 73623.6743 101953.0867 73877.8488 32966.5201 328293.9686 97798.7335 84100.4363 25588.3639 63738.1703 299767094 mnp Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 10336.1657 225663.6207 7303.9695 21596.2075 6114.2932 3626.0354 12325.4645 7088.9479 8625.8862 9570.5674 13049.9639 236127.1814 13670.2603 20721.4445 27955.0164 15552.3105 15552.3105 7979.8553 27371.4965 9281.9583 8354.7787 9696.3541 5265.0095 7112.2296 14597.031 31248.8766 16451.0832 39389.2457 21330.0292 27986.3021 8212.9119 12037.529 26787.5831 3968.5427 9979.2197 56378763 terc Metal Homeostasis Tellurium Detoxification Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 5366.8102 4497.4862 2941.9037 4253.4867 2472.1608 4099.1603 3610.6492 2345.822 87239.5222 4167.5518 7516.2291 2693.6752 2693.6752 4010.6513 7701.3159 6696.3541 9563.565 9157.5256 5932.19 2532.8373 2968.1771 10357.4407 6893.2416 13333.7456 7505.0356 8944.8077 2808.2963 4417.8323 180453.2548 51031.3362 7534.9419 301087399 mnp Carbon Cycling Carbon degradation Lignin Fomitiporia mediterranea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Fomitiporia; 23189.2758 30740.6396 36237.0912 62819.1232 8653.8231 22190.776 39141.9451 70675.2095 15256.2315 30529.0829 62296.2747 362266.801 121212.3661 24441.738 58966.2595 37619.0918 37619.0918 10938.2719 31037.1817 14042.463 24896.8802 437327.3377 16245.7489 15498.657 20936.119 57342.1931 33932.3016 379030.3226 55433.0958 30714.5341 10977.9055 19952.4631 25576.8447 12564.9641 72119.0679 3982838 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium griseoroseum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 12124.0079 32716.2446 54946.0472 66786.6758 5220.0292 17093.7071 4065.9053 7956.8715 16851.3453 9417.261 326136.516 15215.1485 18576.2094 26524.8426 18886.1564 18886.1564 11659.3177 20680.4076 11559.88 10562.1697 8696.8598 10789.3416 6486.7082 12085.0234 51443.625 8795.3002 57916.4906 33586.0732 34629.7273 10515.82 15599.6236 12384.4969 6412.1263 5056.8833 371926893 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4440.6613 28651.3989 8173.936 3072.7314 8907.5356 3015.1488 83732.1072 15556.2008 5342.2351 5289.7355 2453.6136 2453.6136 3598.4391 11362.5926 6050.168 4727.6632 17512.346 4868.4811 6452.736 17368.4443 3437.9085 14299.9724 3675.6302 6799.6235 3823.4634 5216.0795 5537.2967 3258.7478 5360.4419 260649700 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 6912.4574 5078.8788 26166.4424 11895.0199 5055.7919 4544.8956 3888.2307 4732.9314 11811.9523 2915.3188 117394.5658 6378.3324 7811.4535 7720.0725 7982.0481 7982.0481 4055.82 14609.2001 10276.9293 5647.7751 11342.959 10379.8178 5436.151 8265.3138 14866.5546 6252.4283 22944.0231 11259.2859 13748.5681 5195.8281 7371.6061 5839.0322 29554.8907 14786.9266 154083456 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 5515.9333 9404.1557 3894.0097 2768.3511 3441.3303 4624.7102 5125.726 76113.3984 6447.127 16028.3862 20526.0259 5010.1453 5010.1453 4131.1961 16805.9598 4010.2973 4341.9866 4883.1969 2430.5213 2867.6513 8800.6667 7241.3418 17103.0832 8008.2948 6617.2322 5453.2236 5906.1564 5970.6785 3788.9366 8276.5135 409407761 poba Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 27960.7467 11240.4459 51545.5027 21290.9738 23352.3077 9710.2607 11579.6748 47007.6953 10876.8704 23146.2406 35757.3213 32586.1829 557172.1261 13727.3713 23675.5647 14150.6931 18226.5295 18226.5295 13188.3061 62950.3188 19049.0626 46626.6093 25170.8643 15969.2586 46791.693 11424.6527 55376.3086 34840.4717 74486.6349 47866.6619 33252.4554 9833.7716 21569.1247 24024.9339 19155.1015 16443.0162 83317126 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24342.5065 5940.624 12246.7099 11547.4933 48494.5533 9294.3192 14236.5481 21189.5082 13422.798 42289.8515 163576.1791 13415.2826 15344.4802 13380.8533 16160.5255 16160.5255 39249.7904 27917.2773 13968.3918 9104.8383 55287.3515 24253.1763 45584.0183 85258.625 18983.2866 16277.7935 51783.8065 24059.5184 26587.4001 8636.5155 10480.4223 11579.0548 13408.2235 8372.6564 170768691 gdh Nitrogen Ammonification NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 5768.7667 5134.3306 4803.9899 7726.6754 7903.3461 13116.019 2345.3342 4845.3403 6396.7206 25837.874 82106.9727 3478.152 7468.0117 4105.2821 2635.4259 2635.4259 2523.0668 17919.2906 5027.6221 23296.4696 10131.6835 6928.1626 10015.287 3890.9957 31173.404 8592.5926 6405.1066 8144.9677 6157.2928 5796.6612 6791.3915 7332.418 344326229 APS_AprB Sulfur adenylylsulfate reductase NA Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 4942.7921 19087.3834 7818.7619 5054.5711 2460.2954 2927.4377 5013.3576 5576.76 2268.6185 4141.0278 5994.4939 7870.5104 6382.8949 6382.8949 2818.4316 9741.1685 7235.6579 63018.6885 4975.6421 8560.9378 2825.1053 8437.7523 3220.5411 16529.6082 6200.4111 8222.9204 3889.3861 4142.1395 3141.8413 3071.0844 129337.0445 290756889 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8122.5032 5498.2811 83143.7654 23615.6304 3951.1308 4034.5127 6993.2867 5033.4892 122755.4457 5576.0365 11245.7154 8481.2391 9850.829 9850.829 6300.6279 4757.023 2630.917 11078.6005 4347.5188 11059.0371 13570.6018 11640.4281 10060.0576 5903.7344 2765.3503 300023013 cysI Sulfur Other NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 23206.2259 5750.1378 19449.892 7687.0614 5148.7435 20549.7394 2449.822 6122.7872 6583.0502 18921.4077 134323.6829 6073.8614 23018.9721 26422.5956 26997.0369 26997.0369 15332.5551 13003.776 10096.954 6469.4618 5842.6844 6366.9563 4741.513 12112.5701 5759.1456 16025.2903 15275.8366 26899.8137 6661.0985 7056.4353 9747.8494 4153.1876 6108.2823 302445390 vgb Virulence Antibiotic resistance Degradation Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 24715.0142 7179.4946 13924.2717 10295.1653 9146.032 13887.5346 5875.7194 22975.5373 41641.2316 10979.3174 1594103.5367 49116.7185 21934.4282 22494.7345 11080.8884 11080.8884 7346.5841 29439.8917 15528.5262 21949.2083 26525.9235 10947.1797 10594.6918 14829.1521 16515.7536 28470.3162 12716.5831 19646.7298 19801.5776 7030.5558 22876.8135 15392.1459 10630.7825 26317.9386 296846874 rgl Carbon Cycling Carbon degradation Pectin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 13854.3296 29241.3874 6700.7447 3855.0974 12363.5887 11477.9201 9590.7331 27625.3152 6066.2594 257745.7532 71230.4128 17125.2374 10483.6308 9204.3291 9204.3291 8038.7385 30623.0439 10295.3902 5391.6397 16753.6163 7893.6384 6654.8579 6169.8235 12866.5532 8306.8477 46321.0967 18204.7681 14986.0397 36572.6433 14521.0431 21013.8352 5466.1788 11221.8283 378802540 linb Organic Remediation Pesticides related compound NA Mycobacterium intracellulare MOTT-02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 159290.9908 21251.4117 25127.4018 85362.3381 27666.305 33696.8156 18551.8636 20742.7664 25834.035 39430.938 34907.8271 302561.9893 28725.4442 48096.2432 336137.1136 47076.5674 47076.5674 39031.1253 126478.4745 23013.4674 71366.1913 218024.4709 12898.9989 15815.9503 26803.0756 28544.9955 19396.8814 108301.5003 31554.3499 47247.8651 17625.664 30803.6232 108500.5871 34564.7533 208255.8848 78170004 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 21259.3226 22088.2059 69874.2744 6961.9026 7540.9321 9593.3655 19198.0075 5591.4153 44674.4348 30178.7906 17226.7859 324600.1894 18584.7904 15303.7419 18624.4452 23234.5171 23234.5171 11608.2908 28277.8756 15259.1201 51106.3869 17518.2433 11595.4547 9460.5424 22842.2264 200747.1449 102043.3278 66435.8593 22291.7972 33991.2403 7109.6368 24936.3311 22020.5542 19293.3933 19165.4808 270345383 cysI Sulfur Other NA Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6553.5299 4344.8223 3089.8808 3031.9308 1910.1616 3319.296 5048.9117 5692.669 4737.1172 3815.6517 5521.1624 13187.8341 3404.2298 8227.5835 7667.1882 4560.4364 3717.5502 2530.0626 5923.4944 2117.2404 6981.2938 3009.0602 5074.4451 6247.6854 2245.5359 110285385 pcag Organic Remediation Aromatics Other aromatics Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 29903.9252 31078.6318 19763.6588 151740.9943 8341.3187 34096.8285 44954.0169 22733.39 50543.957 34454.3413 28637.2072 1285093.0886 30423.9867 29936.1596 96173.1227 28211.5924 28211.5924 12673.6716 65164.7217 22770.6742 34321.2427 95000.18 121946.8217 32929.1301 34469.0155 54194.2479 72151.1995 93463.0519 37954.3558 53306.2638 24864.2485 30599.7634 74101.5403 19387.2997 57712.9944 27349178 pcag Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9006.4317 5838.1352 13225.4543 10827.3611 2911.8967 13217.6496 8943.9716 15143.4364 5816.7196 9496.9177 9496.9177 8985.9408 7500.6288 6265.0132 4863.8551 3268.0265 8501.3639 17227.1001 15449.5401 14621.0825 6580.9708 4901.0148 4379.0398 142585.2201 3523.7373 34235.497 158538027 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 43387.163 44719.3453 67904.8638 28289.225 15393.7067 28008.2787 10225.2954 10661.5966 13631.5723 17451.7956 18440.978 260572.0132 23397.9689 20972.5838 11023.5703 46543.0774 46543.0774 9279.7244 24357.2231 13609.0062 51157.9874 18656.2436 30141.3824 9004.6198 9131.0095 18756.3278 10871.1695 33970.7651 78034.2632 16640.2917 13798.3748 14368.992 17469.3979 10605.1801 25514.8404 78093522 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 90719.037 19350.2823 57480.6765 23873.5337 26045.9392 8091.7834 29884.2954 51199.0839 33227.1134 48373.3419 81843.4768 35505.8173 1244150.2622 31174.1157 69065.8771 47724.368 67014.6416 67014.6416 48696.2873 170262.1442 36480.1074 113692.947 124875.5373 60731.0685 46247.6222 185891.7744 40920.5765 39189.5755 89487.5124 45002.964 785685.6738 22376.4236 111117.1093 66711.9135 72825.8321 52743.4309 225574173 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 19671.7875 263477.3934 13595.1289 20034.144 4790.7178 12596.1128 9294.0554 12459.004 17343.2363 19221.4391 28995.2278 252494.5335 10692.5518 16403.9046 36596.74 12656.8856 12656.8856 12363.1127 49536.8807 15239.745 33793.6382 25741.3819 21048.8149 11292.3997 20960.7747 15376.9757 10014.8887 32726.2596 17729.7311 36126.2944 6627.9884 26644.3079 17975.2882 7947.9123 25822.5761 78700534 dsrB Sulfur sulfite reduction NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 12038.0684 10510.2386 11141.6005 13469.8281 6931.5933 5804.7556 3656.7231 2549.6528 5062.9813 5426.9537 4042.9529 79942.2608 4975.3544 7217.0312 7814.7315 4507.7712 4507.7712 3529.8404 7591.9431 158434.1724 5155.6877 6235.797 6397.3953 7194.8472 3776.9752 11941.9757 5095.9824 17110.6107 5275.9761 8353.5154 4116.2327 4571.792 18848.2134 5804.1337 8999.2775 218663655 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 40649.6706 85937.2194 3331.4088 2923.1807 2787.8446 70404.6046 8089.0121 4547.0238 4547.0238 3905.8203 6774.1112 8562.9865 6952.6459 3261.1613 6517.4508 5435.0049 2103.4559 11446.296 24165.1328 16300.1683 400232184 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC BAA-247 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 98593.4292 8037.1344 27515.3776 4396.1251 10002.3512 2658.7307 4774.7662 2862.3176 119600.8106 4780.7241 6801.4403 4542.2596 5784.728 5784.728 3458.1306 11151.3857 11243.1631 12871.8102 6632.8606 11237.1799 13148.7488 4420.3434 10633.3389 3824.1097 16704.1299 9220.5074 9068.7936 4105.4758 3958.4505 4098.4344 3008.7003 10363.7048 91691550 alkb Organic Remediation Other Hydrocarbons NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 15937.1698 12718.5909 10571.29 66194.9218 21569.4785 7983.5336 11474.6532 15713.9194 10187.1711 27746.0701 18546.664 11273.4341 350648.1362 35398.1867 23242.0608 22156.4801 16309.3891 16309.3891 8907.0026 23153.7076 15171.1392 14187.0297 18264.4021 22206.1892 11431.5028 8378.7405 25971.3958 10070.1139 91368.1251 35074.284 28078.6813 9662.1239 10970.1302 9322.7907 8395.7677 27992.0141 190994006 mer Metal Homeostasis Mercury Detoxification Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 306962.9479 91250.9719 384446.9007 691724.9415 330925.25 150425.2916 504081.8299 221275.788 192222.1512 179508.8224 275057.721 228998.4857 4228298.9023 227344.3519 298628.3602 496394.2803 436971.6292 436971.6292 234938.8181 422587.461 286058.2511 209966.3748 265145.9675 318276.4037 198097.9659 212217.1178 395681.0977 218550.8033 643623.4223 381278.1252 305984.3416 232849.4754 315430.367 266550.9097 271189.0045 428764.2398 358382720 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 40199.6932 1631944.6111 46148.2017 14181.3799 14455.5019 7389.6092 66065.1231 24937.8177 39320.0759 20149.2284 31388.3432 27873.0315 15719.1129 35151.1531 49969.8028 46568.065 41140.2441 41140.2441 17546.6317 72526.8056 24427.2193 46751.6068 71541.0654 68901.2984 36491.5865 24727.3815 27898.5007 35766.3414 89524.4952 43879.0462 38361.3621 25026.7919 31469.9132 43855.9922 24487.7548 38872.254 260220981 ppx Phosphorus Polyphosphate degradation NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 19524.284 31784.9168 5643.4473 5843.9892 10290.3626 6932.0256 8078.0032 7566.6492 4736.6475 8158.8703 9651.1485 152655.6893 12345.1083 10401.1706 4552.8495 3115.6462 3115.6462 62451.5279 33949.8661 10697.7587 7006.6935 19562.7863 34194.0998 5209.1106 7714.6368 9329.6727 4775.5637 23048.5297 9367.3329 14859.7987 5809.1471 10674.2621 9605.4513 14830.3212 9008.8494 16126636 mdld Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 4354.8402 109573.5098 4857.8581 3457.8997 3457.8997 34901.9991 2178.3689 3342.6347 10454.5194 2798.7522 299526748 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11654.7276 6029.2826 10024.234 7921.0998 11442.1164 6019.6802 5384.1103 5423.2803 7811.8631 3628.0081 154406.883 10603.8918 7375.9738 5679.0938 3862.9875 3862.9875 6020.1457 14285.8832 10167.4319 12549.6692 13092.2646 15457.2558 43846.203 4900.2814 12984.438 6891.6849 23583.4467 9632.3274 13862.9501 8300.2512 12050.7696 16972.8397 4881.1887 15637.2923 363419801 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 5767.001 5340.4817 4875.7339 3677.0552 3282.4407 4503.0481 11815.2085 13895.0538 6887.5387 4977.1524 6091.0854 12501.773 5514.9601 5514.9601 3735.4503 10137.725 6012.0482 11408.0307 13259.4659 5663.0398 3392.2961 4254.1517 7868.0747 5326.9333 18051.2459 11147.722 13028.3663 2939.4539 6803.5744 7241.8134 6018.1053 7923.2815 373233019 pme Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 6157.9834 15875.5067 10645.7371 5505.3371 4318.0193 4116.0752 4400.1799 3945.502 130240.2681 7708.1113 10023.5578 8709.1549 5513.2967 5513.2967 4849.8359 11490.5938 6645.5578 6850.3006 7472.9415 8571.709 3133.1305 3475.7182 10819.2749 2798.9065 12891.9841 4322.0686 7731.1652 8271.0565 4104.1548 5303.2626 3292.9339 7979.6977 419081736 one_ring_23diox Organic Remediation Aromatics Other aromatics Escherichia coli DEC4A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 112482.5457 12935.2749 18814.4751 25687.5341 39565.8247 7841.1804 12820.0585 55910.6125 55953.975 30446.8486 73638.5033 39847.9602 1022360.167 64411.4482 96553.6098 84302.7306 28561.3819 28561.3819 28108.9429 46917.2301 22714.3476 35880.6011 124692.4668 36666.0914 18608.4649 30532.7611 53227.706 23565.277 118354.4556 60792.18 56111.1756 20849.0381 40979.1796 66496.3911 23847.644 122502.0848 69934124 arsc Metal Homeostasis Arsenic Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 4632.5568 4700.1248 7459.9237 2718.393 3431.2663 2659.9896 128820.7393 2478.7276 2478.7276 5322.7296 3945.4141 7016.1685 1970.5549 3841.9593 6715.7659 2685.7131 3025.8321 3194.0623 254471315 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 10477.3958 7797.3185 7797.6896 6064.526 8311.7932 4239.4064 8034.1649 17445.6891 4787.1312 205544.4589 9778.9469 10494.2654 5426.1082 3758.6504 3758.6504 6772.3368 13745.6376 8151.4867 9817.5952 11876.5008 10823.5331 41364.6982 4276.2838 10511.8774 4542.1181 22498.7925 13162.5562 12276.0724 3417.1261 7228.2203 6936.6392 6037.6077 21396.7446 409406032 arylest Organic Remediation Aromatics Other aromatics Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 174390.5722 59294.0878 27667.4794 18234.1122 4673.2127 38236.9397 14541.0234 4535.4347 35130.5188 112496.731 71398.6713 417676.2493 168041.8317 29247.2091 27063.7707 22629.2339 22629.2339 46716.3785 60766.8032 14731.7373 53590.8921 30521.9266 74977.6296 30230.9387 24744.5666 80456.1219 27901.1313 40718.7157 28238.4285 33574.2992 12564.3229 27813.5844 29461.222 34049.39 60890.8303 197286551 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 10531.4576 7614.9062 7188.3241 18463.5687 10198.6538 15094.7524 10900.2692 12073.7404 19071.8008 344766.0999 12286.6372 13609.7281 22365.9338 9796.3805 9796.3805 6561.6202 20116.3694 11981.9599 16583.6322 87728.4075 11299.1536 6987.9299 16349.9906 11914.223 17898.5179 23056.9405 4287.0349 24588.9918 7065.5662 7551.0876 13976.0624 6975.8036 16193.5975 381381539 urec Nitrogen Ammonification NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 8314.0244 5205.0922 3596.3665 5168.1588 3734.3852 4178.0196 6223.9738 77463.4448 6990.9791 5382.3794 3256.9333 3256.9333 2643.5538 11186.8447 3685.945 5890.9624 14608.5547 8415.5691 3639.1997 4391.8525 7478.8172 3807.9365 11461.3903 6145.577 6340.9363 4283.8813 3205.3228 10890.5314 8859.6148 5806.4049 197716508 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 12307.8031 11404.976 5848.6265 22674.2095 8809.5467 7347.1919 4218.4625 23945.1647 51264.3692 14013.9249 182067.5566 17077.1608 12453.1319 9439.1735 9231.7016 9231.7016 11588.7138 20161.8932 11448.6185 145958.0435 14351.9319 19676.8077 10867.0487 6441.6993 16052.5653 7210.4225 32799.4412 16330.7727 18681.6645 5303.2412 12080.2203 7999.4754 5677.5362 19866.3701 304345981 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 6370.3547 4949.6493 2946.9322 5804.8672 2770.2789 8208.6633 7250.6521 7250.6521 5114.1058 1752.0992 2782.8536 120593979 xyll Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 14376.2701 10525.3941 14497.894 6940.2526 11645.8055 10389.626 8519.386 15750.7244 12822.4852 11043.5683 237274.1922 17394.4664 14079.1209 4400.8583 4400.8583 11000.0836 18251.0811 14894.2865 11257.3574 12953.899 21869.9433 6720.0015 6277.5092 19646.3239 7047.4351 27708.2931 16408.6798 16356.7435 7599.5172 9045.917 10890.4921 7973.5131 19826.8044 336327501 urec Nitrogen Ammonification NA uncultured marine crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 4301.3667 3107.874 2377.3848 3156.2577 62574.7093 3592.3004 3580.2831 2432.2838 2432.2838 3803.1341 4981.8712 2381.3217 1692.7296 3059.7606 4613.8097 229565227 glucoamylase Carbon Cycling Carbon degradation Starch Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 10828.3928 5904.0392 5962.5448 6755.5475 2839.5465 8082.932 4202.0668 2921.0198 106254.7704 7956.6255 38822.3749 5698.0742 5027.7078 5027.7078 5521.6548 21405.9681 5119.8019 4462.0533 13240.1891 16223.5111 2247.9418 3332.4943 13124.9329 4099.3313 7986.6436 9383.4842 6107.8776 2541.6467 136915.4068 3630.0931 3906.1796 343801721 nifh Nitrogen Nitrogen fixation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5323.9947 8015.382 2733.9587 2049.9956 3420.1533 3517.6247 2851.029 70803.8566 3252.2108 3252.2108 11311.2425 4317.0289 5016.575 4981.7046 4070.6771 7120.0873 5190.944 2267.7786 6791.014 5574.0952 3488.202 2893.6635 2372.5906 8307.9066 112462345 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10853.0444 7376.2426 4454.6616 7105.0556 4640.4409 3234.5511 3828.847 7863.1711 7657.8194 4749.9403 306333.3367 14505.8537 7637.496 6779.7446 5099.1362 5099.1362 6155.3547 14605.4797 7422.4955 7349.7505 8968.1573 13645.6756 4528.4689 6462.6272 11816.8467 3377.1929 16611.2268 6957.4866 9974.3744 3716.5221 5481.7844 6552.1491 3984.2745 11088.6273 296448049 PRK Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 13916.5255 15188.1945 4478.4817 32005.4214 6904.5926 12395.6359 85003.8367 4233.8162 11164.5691 8943.995 7079.3928 145653.1246 9815.2583 11294.2363 10193.9717 6619.9768 6619.9768 6048.9731 15838.9211 7899.1979 6917.6705 36748.5616 11576.9197 4766.5256 6378.4615 16120.3339 14005.8563 30958.3288 12731.2687 17693.4008 10333.1578 9217.3008 12324.3686 12522.1256 15854.5705 89512372 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 103095.455 40664.2631 40486.9074 31715.8756 14241.716 26840.5391 57241.5578 30397.757 212117.7431 40195.7982 79597.7813 775540.9539 80694.0415 49236.3116 52329.7187 45774.8941 45774.8941 24794.3856 75754.2954 46647.5866 49883.7779 84552.4671 64984.2382 30559.8504 51421.4982 54553.6966 44235.9183 114493.4472 77958.3162 60860.4344 38585.7759 54658.8558 55546.5689 44099.3142 54685.1037 219939159 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 332131.5835 13404.8835 10882.3856 7949.7199 9618.6214 9846.7245 6614.5782 12668.2299 15374.3343 10722.6093 297826.1179 18177.1539 14842.0908 17843.3796 9419.6524 9419.6524 15634.8081 27067.6691 14001.243 27663.58 17878.3855 18487.4922 14180.6922 8177.2465 18863.7747 12026.7556 27470.7638 7708.1073 22369.5838 7047.7386 15240.6887 10751.9633 7301.3568 22032.0058 357383500 cellobiase Carbon Cycling Carbon degradation Cellulose Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 3791.4013 892887.4226 9750.309 3800.942 3392.1256 7944.7107 3414.9732 69401.9406 5145.9759 3514.3411 2899.8188 2899.8188 6883.5488 5180.9821 4207.8357 5335.0731 2219.697 9346.4861 4196.2675 8226.9537 3013.374 3286.0826 3781.3481 3017.4962 114543369 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 6890.1542 348500.279 21662.1484 9925.6401 12460.4191 14243.2184 4994.5285 4188.5613 8191.3722 100037.1653 5748.7698 95075.2156 7751.2183 5768.0366 4051.6004 4051.6004 6751.1253 18173.3715 8350.3836 8520.6048 13402.7241 9491.2832 50302.7915 4608.6374 10520.8848 17157.4948 19938.6499 11899.8854 11335.3893 5295.554 7979.6291 9683.3092 4715.8366 11497.947 116183260 terc Metal Homeostasis Tellurium Detoxification Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 14926.1452 15200.6613 10907.0426 17445.19 17245.7321 27337.593 10742.364 7000.1544 16452.3032 19033.4537 9767.7795 529098.7381 20735.7651 20132.4782 12093.7644 8949.1468 8949.1468 9507.2899 33111.111 19163.5433 18499.0511 20507.7791 16732.6876 7866.3379 9582.0085 18425.6852 12821.3994 47061.8837 18112.4394 22521.6562 10498.627 11132.5665 10262.4465 8704.1479 17649.5208 212678704 nitrilase Organic Remediation Aromatics Other aromatics Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 5909.8143 4098.6545 3460.954 2659.0531 3602.6158 5436.8226 5448.7032 3542.652 185279.9094 8537.6017 6539.6591 2647.0209 2647.0209 6070.3763 23753.7823 6319.9314 10233.3903 9758.3361 9535.4601 3891.8527 4326.8246 14415.2799 7343.2101 27550.4499 7464.4596 11937.1998 4050.8463 5704.7607 8671.3732 3583.3147 12139.8462 148837588 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 41588.2121 263435.7475 4493.5845 12214.5278 12214.5278 25577.9706 11045.4079 84349.3191 11575.5149 43347.4807 3135.9797 46589.7984 5274.6773 149937760 amyA Carbon Cycling Carbon degradation Starch Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 4793.0337 3883.5297 2243.0715 3521.053 7709.3202 2251.0215 2251.0215 3626.299 4474.9494 6371.246 4240.5417 2658.5284 2548.8308 5198.9235 3039.9049 4095.1875 7371.5598 2897.2753 4529.3091 332040658 poba Organic Remediation Aromatics Aromatic carboxylic acid Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 4214.3701 689307.9974 68865.9247 6894.4717 4411.2529 4710.4427 9262.1638 83967.0783 8939.8871 31300.034 11137.3304 14828.0552 14828.0552 4483.413 9594.2216 10288.7404 5708.4667 24145.3698 7875.1948 3741.0498 10385.0531 7546.1385 5805.8624 20640.224 66739.1676 23603.546 5765.8469 7864.6436 12828.6799 6263.0134 13404.2902 116059991 nitrite_reductase_protist Nitrogen Assimilation NA Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 6119.3223 7174.1185 5558.4821 2615.4265 2749.7891 2123.0899 4848.1527 8599.4328 3268.0175 115205.937 8119.0927 6069.8559 3339.1168 3339.1168 4823.7429 16812.0011 5610.3739 7806.5877 12089.6133 6700.4442 4114.603 3844.6963 8844.5781 3228.0736 13427.1895 8448.91 9208.8704 4598.8713 4769.306 6458.7918 4596.5308 8981.4317 363980899 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5861.5383 70197.5674 8251.4826 11459.3665 5677.355 5416.705 3246.2792 13051.6587 8091.7033 4071.2033 94855.4397 5603.4316 9751.2037 4540.698 3346.43 3346.43 74670.0286 16555.4234 6844.1218 4621.6816 18924.075 8343.2808 5235.7909 5017.5985 13270.2915 5184.8784 22406.9705 10356.7175 11643.4392 4595.1021 9110.4605 9624.3983 16458.1483 14106.3278 218294900 fccab Sulfur Sulfide Oxidation NA Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 4015.5289 10241.3524 17431.6124 9252.8444 53326.6215 4319.0233 10707.18 4227.3064 3921.765 12201.2032 97720.281 8629.9837 16670.8853 7842.4059 10977.1008 10977.1008 3219.3463 7182.9318 4523.5352 10649.3072 4506.7197 13415.1969 2440.32 6245.2497 9407.3216 4190.1676 13585.8945 7265.307 9174.4549 8461.0189 4405.9109 7004.8274 3542.518 9885.4388 11138780 actin_Cryptophyta Other Phylogenetic NA Goniomonas truncata superkingdom:Eukaryota;class:Cryptophyta;order:Cryptomonadales;family:Goniomonadaceae;genus:Goniomonas; 3685.9237 19570.918 3233.9549 64134.6884 5820.4699 4511.4617 4411.8754 5354.7962 1677.5809 4030.4009 3243.5638 2503.9215 315418203 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 14330.6793 24929.2395 11121.2728 20166.7975 29065.0289 12073.2717 22931.629 15426.416 23973.9964 18415.0339 19914.9698 545534.5645 14605.8685 34256.4146 43538.729 27285.0721 27285.0721 14574.6796 21473.0688 15934.7149 14963.0559 81457.5903 5625.9022 21719.4615 13380.1787 33103.6693 36101.9092 39867.0957 91734.7147 50851.1255 13312.4499 15356.8432 22345.9128 16383.1987 23849.3436 319742170 amyA Carbon Cycling Carbon degradation Starch Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 9069.2464 5974.502 5054.8333 5360.252 6074.6073 8333.0779 7322.3057 107191.6895 10838.2876 8165.9352 6205.508 4918.8332 4918.8332 6516.8503 10049.162 6745.5837 8678.7463 12368.5726 6468.5779 3656.3219 7566.5131 10721.5273 5502.2079 15804.6944 3710.9468 11575.6652 4552.8345 5278.0216 7686.7749 4246.5906 6168.2772 377555284 amyA Carbon Cycling Carbon degradation Starch Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 19810.2701 6229.2255 8508.8542 7785.7837 5485.7313 2731.0496 4404.9462 15634.9389 6336.35 98305.3793 8634.3744 11522.7197 10562.0064 3415.1226 3415.1226 3786.7396 21664.5456 9375.808 12140.992 26111.5332 2791.6791 5352.402 8788.6371 57221.1101 26531.6046 12873.1362 11813.4483 3402.7982 7718.4686 13493.4641 4144.2721 10590.2502 254444955 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 5984.3179 8090.4366 15854.6184 4237.6425 3866.1364 2315.174 4908.8107 8539.2621 7997.757 112474.3546 9561.9301 5609.1002 5330.0754 4167.482 4167.482 7030.5065 10678.1614 5642.9347 6875.9607 5850.2328 5626.0525 3398.031 2773.6344 6454.3731 2785.7069 13745.9567 5246.3704 9433.837 3101.0996 5107.3351 8475.8037 3410.1668 10091.7072 319783965 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 10728.8086 16452.1968 8408.5447 16309.0356 19283.1448 9338.8209 13797.8925 8359.8538 5869.3566 14452.7924 12632.9897 6944.7083 322842.8082 16519.3493 21736.677 23047.4164 7679.9246 7679.9246 7888.7295 18993.5238 15844.9117 14000.3946 13272.1917 16378.2161 7824.5112 8562.2051 22344.1064 5932.4077 26779.8599 16333.9003 19500.7965 7755.1731 8720.2786 8683.189 7399.703 16392.2654 114706578 soxY Sulfur Sulfur Oxidation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 5699.5855 3482.9636 3236.4084 2158.909 4359.2852 6782.8894 3236.6259 99919.5951 4583.5 5378.376 7711.0596 1999.4099 1999.4099 3407.9559 9500.2385 4529.2796 5095.0788 5438.5886 6729.5315 3182.7693 3273.9816 7395.705 3290.924 9093.0356 7806.853 8707.5159 3896.7119 3672.7813 4729.2712 3664.5076 7886.0032 289207421 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 279319.5458 6228.0442 10082.9179 17384.1962 5153.7691 8785.4211 4633.8169 5532.5522 8507.4861 10790.584 171730.62 8599.0698 5434.9578 4801.1672 9796.1859 9796.1859 5533.6279 15722.9235 11113.3131 9614.8082 9448.7601 8126.5199 8676.5674 3968.5773 8534.2352 57055.6937 21230.956 16497.9911 11267.8009 5630.148 17963.2941 7680.9051 6704.2811 14380.27 398968539 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. GM30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7628.5322 5955.1598 2943.6561 7550.2757 12865.0242 60375.9216 5673.2795 5673.2795 3725.2038 5277.5481 4655.44 13225.2688 3597.1451 4574.2052 1711.0073 2680.9636 255292469 xylg Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 117085.7268 15079.9534 12261.2169 4454.3097 3617.7541 5384.6601 4217.9912 4398.9353 4661.5841 4037.1553 4037.1553 3765.3553 19667.2792 5115.6795 3795.5541 9564.4901 12976.1318 7081.8113 8110.4314 6650.059 6642.218 11484.6697 14958.0306 6108.9181 2695.6415 4437.4608 6101.3664 6573.5981 9184.3992 288733177 nosz Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 3940.6725 4207.441 5200.6711 3695.6999 4015.4647 4224.5132 2829.3213 208903.4958 3868.8159 4583.261 2270.4643 2270.4643 7807.0354 5515.903 3185.7826 8735.0694 6470.7498 2994.9165 5771.8584 2333.6857 13281.5402 4756.4444 5011.8505 3323.8802 3090.6393 1937.2146 4759.0174 188989555 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 15535.5791 15736.6169 5549.3101 2139.266 7374.8762 12357.8457 7053.9308 4929.2696 140626.6353 6698.4515 5269.1096 6045.9572 4569.9923 4569.9923 16986.5222 6415.2177 8499.7101 8504.4387 6527.9616 7920.0504 16412.0598 8783.8054 3782.7784 33616.8922 11309.2678 14110.0504 3601.3301 14013.9081 6532.0415 5406.4398 8487.7454 18034201 aps_apra Sulfur adenylylsulfate reductase NA Archaeoglobus profundus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus profundus; 5374.0846 4754.0994 3627.1321 3627.1321 4806.291 2558.4962 150027321 dehh109 Organic Remediation Chlorinated solvents NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8694.9271 174207.4028 9393.6274 12221.8302 3950.1397 7498.5342 3382.9265 3382.9265 3044.3569 3535.1635 3866.9278 29426.0665 5807.6971 9562.6659 4905.1558 12744483 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Amphidinium carterae superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Gymnodiniaceae;genus:Amphidinium; 9118.6477 6752.3631 12762.0383 8535.7974 3715.5857 3250.8812 8356.3803 6978.8418 3910.0898 150502.1318 11280.0799 8050.5712 5366.9451 3357.3349 3357.3349 6536.7525 14935.0604 7139.7961 7149.1865 10085.623 8408.9439 4149.7165 5182.1466 15866.1148 3968.2526 20227.9755 8639.9677 14136.4972 5151.0336 7342.3431 6168.1784 6040.1243 13319.985 89349230 merb Metal Homeostasis Mercury Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 14212.2556 6985.7581 40178.3193 7554.6015 11253.3175 10727.947 6621.5434 30685.6164 38279.7437 18504.6756 260208.2806 12977.4588 33575.7144 18660.266 20762.5945 20762.5945 8607.5718 32203.2355 11631.7447 12724.8271 33931.6289 12971.3823 15022.0511 16306.4663 17836.6455 21439.614 69481.8053 37990.8893 15949.682 12580.971 21551.0055 25117.7655 11297.9317 14186.7791 358753228 RgaE Carbon Cycling Carbon degradation Pectin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 170649.9532 1252295.5771 11294.7804 204814.5421 18585.1163 12496.1295 15120.192 7996.3951 11160.2981 24673.2296 16737.256 407859.3941 19741.7856 10053.0612 17769.5319 18697.7145 18697.7145 10615.3686 21215.0696 15546.3552 23587.9837 23127.3992 29392.9226 10783.7202 8947.8654 18453.411 18430.0159 61914.079 23418.3155 32788.484 10165.5592 9907.3599 11819.8409 10441.8223 32294.7183 227272193 xyla Carbon Cycling Carbon degradation Hemicellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 29014.7257 13589.0714 31061.2511 37119.0601 8411.7862 297289.2202 13597.5498 12805.8055 21285.4552 38251.7274 17405.3876 430480.4992 25758.2582 25651.1887 19957.8634 16804.0475 16804.0475 33812.8744 66266.1223 25111.8791 21121.8472 35843.2402 30695.6524 14005.3379 12578.3781 36834.7283 13673.9125 58612.1907 20794.3677 30968.9562 23012.2668 19458.6339 16793.3265 15533.5538 34445.552 329937483 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 11529.3258 47954.9029 37252.611 9571.8943 21176.0539 12468.2917 22585.7904 8486.4038 8807.6813 17459.7241 9800.885 177916.0102 35187.8614 17244.8343 18031.1688 16175.9094 16175.9094 9191.6859 24045.3591 15621.9474 11532.1429 32800.8583 37131.4054 6936.1729 8935.8633 25275.8934 6914.179 41973.8277 36564.4017 26755.1829 7520.6498 9541.6046 14704.0228 8069.453 20906.5383 85069088 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4210.3161 4523.4072 3393.2701 2608.3798 3280.786 4604.4686 5754.2624 108004.7454 11560.2851 5511.5608 4730.8036 9196.759 5421.2133 4149.6069 5204.3871 6319.9874 3642.7831 5091.802 2710.3436 2680.0554 5414.2411 3367.508 3204.5421 3566.5569 4696.7027 5480.61 375092110 cda Carbon Cycling Carbon degradation Starch Helcococcus kunzii ATCC 51366 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Helcococcus;species:Helcococcus kunzii; 5321.7097 11685.8858 11649.0984 2699.9676 5721.9053 3482.3842 5524.1131 9695.772 8508.2399 134038.4748 5947.9772 8020.2087 9080.6972 3990.6349 3990.6349 4409.8876 13742.8739 13858.255 7995.2401 5365.0192 6330.8496 3163.5336 4715.4983 15877.6187 3646.7552 20505.3185 9002.5997 7784.4972 2405.666 5472.8868 5767.6879 2827.7421 6041.4458 213406822 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 39564.7107 12211.9981 17521.5173 29102.2621 9290.4634 27695.1437 45393.7242 10472.5359 24734.225 10489.6559 165937.0954 13774.8317 17517.0276 12053.5766 9198.4433 9198.4433 6310.7782 27552.2147 14785.7541 13525.0762 14843.9598 47761.821 17251.9178 17362.5434 17506.5786 20690.9673 32346.7171 14021.8749 29043.8351 19853.1321 11639.6579 25811.9234 13202.901 19439.0018 114330816 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 44152.8868 22716.3952 16498.1026 23556.1816 124311.8432 15432.0198 31321.4823 23859.0467 27754.4841 352187.3678 40946.3874 40216.7368 3623369.4346 201479.4986 51305.3324 39530.2905 23007.1582 23007.1582 19949.3616 51176.4686 30847.0157 34715.6468 139009.5103 33649.8016 16262.4698 16586.5889 38882.4283 37666.7387 104433.7743 36321.1713 42843.6614 17699.2462 24087.9962 27863.2482 96458.4911 55909.626 284032965 chitinase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 77183.8948 56628.1782 88061.028 908392.9529 84574.0054 27674.4001 96733.2362 74765.8021 137500.8856 162586.2064 85658.5787 106472.2934 2569421.646 93054.4499 103632.5828 125252.5087 199942.6395 199942.6395 56257.4078 99590.9621 70683.8468 97968.731 218545.3928 300029.265 44890.2697 70312.3667 74772.607 170738.9276 164347.9032 78281.4886 119370.5063 172540.9846 50037.1245 66156.8657 107763.2758 680858.8941 70671751 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 13583.2662 5780.5555 6046.1695 14946.4184 8955.0888 9036.24 5418.2049 14188.6469 62142.772 5462.5606 164053.8198 17701.8474 15696.8494 8373.2322 5786.7029 5786.7029 8433.2191 25165.4847 16707.6233 10961.1575 12812.9109 14814.2966 6062.2445 8926.8256 29001.8675 11279.8937 26808.0341 16914.2307 21387.9307 14944.5953 12253.3485 8486.1785 6174.3997 13940.1446 302676203 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4368.2807 21272.4338 11893.3182 11750.1809 11143.2675 3828.8821 43897.4081 13329.404 150976.8804 8783.3668 5031.4906 9494.5361 6958.6396 6958.6396 3327.5748 12608.526 7033.3149 10006.4875 2851.3701 11411.0142 11058.144 55830.3482 17877.0126 11106.0974 3406.4338 6684.4237 14777.1423 2927.3923 213971300 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 17043.6684 5224.1018 6323.1093 16107.5877 6802.1109 4412.5705 3357.8425 2692.7424 4164.7818 7547.3308 2604.98 64111.4754 5497.4221 9352.0144 17595.7475 4495.6514 4495.6514 3223.1131 7770.8022 6054.6528 5696.272 27974.1533 2748.3572 3299.469 10425.1573 4065.1815 12403.6781 8780.1173 17491.3324 4473.4042 4334.7737 7354.0603 3525.6958 13691.1693 82548050 catechol Organic Remediation Aromatics Other aromatics Nocardia sp. C-14-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 22171.1888 20761.2656 12034.1677 45621.155 7241.69 24631.9528 59099.2705 119758.2539 14904.4275 307886.8154 46951.2721 340382.5149 27681.9644 19831.2319 63459.9051 24807.5925 24807.5925 62507.0714 38789.1196 42597.1295 199936.4058 33071.5386 45374.7759 25340.9025 19841.0405 33848.3933 23169.8303 69991.8386 24543.5139 31479.5871 17506.1954 22241.5418 47167.5537 19088.2199 331908.1011 22298490 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 15399.9454 22559.9795 13325.0417 15763.9933 21567.7217 11231.2394 8166.6751 5608.2487 11460.7488 12580.1988 6973.9454 291315.3584 13353.6526 14514.5199 10839.0885 6807.9877 6807.9877 8681.1738 19609.2568 12835.1619 11132.1532 18601.7596 19860.0071 7085.8076 6177.6376 15989.636 5915.8353 23092.1872 10946.8365 16545.1212 7972.9907 7256.27 10723.7405 7096.9508 19985.0195 237858237 GAPDH_Parabasalia Other Phylogenetic NA Joenia annectens superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenia; 14271.36 7302.0738 13155.2757 20356.6958 5974.6646 9455.4058 8454.1694 4472.829 9023.799 24016.659 5156.8298 228904.4213 9507.8593 18150.8117 6680.9513 7652.8943 7652.8943 8315.5083 18025.9 23750.7064 10267.2084 21157.3048 44490.0459 5684.8043 13424.1137 14903.0934 8542.8232 23481.4992 16900.1947 19856.0829 7834.414 21668.3908 11482.198 9165.8448 23233.1705 310817436 mannanase Carbon Cycling Carbon degradation Hemicellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 234436.543 36310.3174 13368.9083 9652.5385 17654.1051 45869.8218 116118.9712 21512.0807 57630.3256 59897.5586 389436.3553 154489.2468 89939.259 40330.4619 97997.4675 97997.4675 20395.2454 79078.5065 15026.2053 34113.6952 50770.5863 13553.2233 18098.6469 42581.8304 61579.5239 47256.5145 72459.2147 209282.0316 41000.7078 20335.388 32121.4051 40835.1555 37209.9328 43415.7291 26278668 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 39474.2785 11511.6613 109896.2069 17006.4044 35605.8347 5068.1374 14222.2607 36893.6598 32875.5224 21743.2653 39032.3499 42318.5777 478277.923 36960.8259 44753.5762 34433.9154 61641.7475 61641.7475 57055.0786 44775.5133 62461.6659 17570.8434 56622.5061 9926.6937 19235.4339 22472.3706 37383.989 26243.3908 71420.7877 48054.7985 77708.7917 366632.6279 34341.0641 41032.988 23659.8543 30809.0703 383641593 ppx Phosphorus Polyphosphate degradation NA Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 14147.3985 13061.4714 9339.2755 5195.0302 6387.3906 5280.7399 10432.7715 8786.1889 14833.2718 7202.3466 268212.6863 8892.6258 13461.7631 6625.7832 4457.183 4457.183 9976.2053 19967.6935 10689.4404 38592.7146 19461.5672 11110.4877 7861.7471 6133.0502 11906.2649 6726.3364 23320.3088 7861.7177 33290.0783 6799.005 9540.1367 8735.9611 7382.7367 17227.0365 311285621 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9699.7519 6139.2135 4255.8186 7824.1823 9843.0005 5568.7607 9344.5403 12406.6142 247812.6421 8915.3724 8364.5891 5736.5247 4412.2762 4412.2762 5162.8899 11679.9278 8176.9458 6550.4721 11163.5088 16255.001 4090.5583 6984.2722 9998.4009 25091.3892 14767.5359 4640.4448 11640.1177 4423.5848 5988.0223 6901.1295 5613.251 8718.0767 157846073 nfsa_2 Organic Remediation Aromatics Nitoaromatics Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 23292.7689 12269.6397 206580643 one_ring_12diox Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 32157.9137 17322.2463 9840.167 12781.1828 29461.0114 18408.2797 25140.8631 14752.1435 10090.1547 20048.7089 38148.1093 525476.9275 18757.5761 37887.6209 9486.6289 9892.8899 9892.8899 16270.4851 24577.2224 18141.4592 21335.4027 48257.717 35415.987 12205.1195 11872.5004 22860.5429 10887.7392 34184.9573 25146.1557 22551.1436 8627.771 67154.9082 15653.4556 14595.8954 25218.5283 89046717 urec Nitrogen Ammonification NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 56677.2847 17906.4264 14936.4282 46976.5643 9609.8371 14112.3113 21499.6037 36122.7131 14376.088 17664.0505 12467.449 423049.2042 35390.2378 51942.2696 53483.9779 29685.3054 29685.3054 7795.2508 28122.5257 14676.7532 12548.8914 153363.0696 69533.3189 8057.3087 15714.5578 20493.1794 8234.4447 27418.6371 25880.9253 24700.501 8857.3527 17919.2184 20315.5636 12612.2672 12824.4973 155964467 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 8215.3703 9030.0837 5261.4011 31891.8561 4812.8456 5783.8761 90214.4295 11244.6293 7881.5843 4074.1779 114445.9086 8629.7984 8776.7063 14790.0376 3559.0673 3559.0673 6318.6293 15246.9684 9057.0802 7579.3516 10499.5986 14889.6387 3822.9567 5158.3941 16245.5509 3679.3281 20145.1829 15206.2795 14835.9564 4425.6486 7517.918 6608.1722 6845.4657 48353.1906 114330819 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 11145.4766 13697.0166 7559.5063 8906.2673 3191.3836 5896.0114 7564.788 6159.0803 75414.1412 6604.6007 5685.2522 6202.2599 2676.7927 2676.7927 5550.0405 13968.2131 12666.7207 7540.7202 10974.873 12927.1783 5249.4931 5297.0793 19964.7669 8248.5446 18352.7028 11173.3714 17548.0396 7023.0546 8635.0846 7465.6499 6075.3769 12461.1269 329568152 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 9968.9812 10340.4725 7474.3832 13510.144 6146.0236 2438.067 11022.4846 8957.4851 5117.6655 143532.0986 10326.5547 7056.1907 168594.4423 3110.4459 3110.4459 7502.7502 12135.1074 10257.0537 11885.4545 10851.8999 9355.2282 6060.5931 8254.6363 15194.2799 3830.8504 24624.8616 12324.8397 17777.2096 4466.5537 11553.9703 7284.8304 4490.9209 10038.2393 296182727 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. longum JDM301 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 130909.7347 51780.1051 62367.1436 113755.03 137102.6665 41367.3755 107217.0666 67946.7812 83563.344 59955.0083 85188.9268 69100.5752 3368481.3499 105182.756 85936.2533 131675.676 78180.2103 78180.2103 68914.3683 87789.6984 44646.0577 84250.5348 120611.2382 133573.551 44073.4438 61087.1054 87791.7212 49966.1288 137035.2997 119739.1813 96934.102 55033.5711 48869.7359 67597.4005 76133.5571 144835.8131 383762872 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 5286.2956 3113.5102 5190.8783 5777.3715 1430506.7845 6796.1503 6796.1503 4155.5326 7984.9051 5526.0485 3454.2808 5994.9806 15076.4627 13789.2094 5007.4468 14847.3974 7969.114 3683.302 2507.6794 344690092 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 23235.1834 14788.85045 16310.4795 17397.2443 11906.0054 23700.1997 9307.9571 26038.9363 41790.6949 17803.5299 1272390.4464 45031.6593 40500.6848 29567.3108 23011.9648 23011.9648 16604.7529 38999.3008 20234.9542 28378.0728 44122.4514 21172.9489 16355.433 39578.0203 14192.0328 69979.1412 17199.5335 48414.8835 15300.6841 22394.5068 18532.1051 27809.8109 183600670 gdh Nitrogen Ammonification NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8572.3947 12524.2917 6053.9588 19954.5068 8857.4207 10540.1788 6179.3453 8253.087 12520.655 5854.5795 132930.3297 11950.8263 10339.9102 6289.1927 9997.9465 9997.9465 7453.2302 15525.2969 13234.1153 20351.0808 13147.5167 14442.0118 4691.5756 8694.5528 11698.4603 86284.53 21269.2735 14230.1805 14603.8831 6063.8915 9675.8374 9302.3956 5262.7235 13955.3044 378803704 phdk Organic Remediation Polycyclic aromatics NA Mycobacterium intracellulare MOTT-02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 44275.4571 24631.1386 23450.076 32123.0694 5989.9232 44802.2537 71069.8617 30265.3006 43526.2946 307841.952 37973.593 514019.9362 45942.6226 32475.5104 40866.5663 39684.2902 39684.2902 18322.8207 106975.4912 31646.6956 31037.1135 47504.8196 51059.5758 27402.9324 28914.9057 44116.9899 126039.7281 131753.3736 142438.0521 65600.741 24190.3939 34059.4637 52309.7388 72507.1081 61805.926 225157179 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 11832.9295 8112.0043 8687.7947 13745.2556 14067.8433 4490.5318 4609.0907 8170.6411 306451.8728 9357.2363 11531.3913 226079.5935 9092.4893 15531.5996 36686.1984 14108.6423 14108.6423 6655.5036 16207.8374 10078.7785 11853.9647 13096.6266 7986.8416 7970.6306 4033.7874 12505.2779 5891.7554 19762.806 30499.1723 11559.6133 6556.7149 7093.8452 15139.9176 39780.929 11607.231 89276731 pcpe Organic Remediation Herbicides related compound NA Sphingomonas sp. BHC-A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 198524.9377 14194.2733 35074.3032 36477.6204 11456.8766 44021.8223 48260.4692 31594.2302 29771.3995 98443.7685 36504.5154 719070.9798 63150.9146 31515.9574 41359.3743 33126.0112 33126.0112 36766.0119 48230.5174 33156.4145 33911.6967 47602.9657 51222.5672 40589.5154 33878.1545 80249.307 46876.2798 110233.3496 84753.4063 66222.8577 23703.5329 55440.424 49672.0933 46248.3174 72423.8052 397166615 fosa Virulence Antibiotic resistance Degradation Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 15862.7555 8773.9815 2938.5642 9654.3424 1857.4333 1857.4333 6154.8416 4264.7168 4810.1257 3306.4718 8631.6271 6558.3993 5225.7848 2838.3035 3144.7655 344320127 arsc Metal Homeostasis Arsenic Detoxification halophilic archaeon DL31 superkingdom:Archaea; 5745.999 12867.3391 3186.9628 4639.5604 2492.0508 2492.0508 11397.2785 374580378 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 4683.5502 3526.8226 2737.2173 2659.2359 3235.1484 92913.4621 6920.3253 4959.7864 3832.8708 2189.8409 5790.6838 2395.0258 9345.4439 4003.0488 5804.1655 1927.181 3067.007 3158.7676 2239.9153 99082486 alkb Organic Remediation Other Hydrocarbons NA Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 36964.5731 43461.9678 27375.682 19467.1079 11014.6413 9524.134 52045.4349 36649.8136 15761.0123 17402.853 45976.438 31432.5942 499948.1409 19435.9617 32806.3464 43738.5815 48024.1139 48024.1139 21291.6477 108363.497 15755.1244 29098.2348 193648.3833 28242.3332 17957.0737 27110.836 27197.9897 33791.5459 49386.7437 21518.1083 113350.9635 16889.2772 30713.7183 61489.1479 29882.2069 22067.1397 338751276 chrr Metal Homeostasis Chromium Detoxification Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 4582.7951 4541.071 8361.6754 6408.1242 4928.9826 2121.5947 4419.2842 3633.1333 5065.5814 71939.565 6571.1457 4609.0694 17462.0237 7438.2347 7438.2347 4405.5782 11389.0468 5763.2737 7710.4506 13987.4679 38170.462 44155.2316 10539.085 17674.3801 2919.0617 7970.9827 4389.6777 294325873 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 53643.6327 17106.7066 15431.2581 46393.3302 11850.0244 37519.9639 32084.3533 46015.5171 14133.8734 23164.98 49962.1955 301916.0484 19021.3808 25346.8279 77076.8438 27784.3641 27784.3641 16939.3797 32932.4069 19277.5369 22221.9494 45285.7007 15986.3864 14595.9641 22079.2508 26034.5362 25955.7796 59616.819 62018.0906 27921.8986 12502.8014 23633.3326 22163.833 19911.6952 30184.6417 95110018 arylest Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 5769.7335 13844.3297 3675.8599 2804.8171 18957.6555 7971.6705 13392.5037 3384.2875 100060.7374 7948.0527 4777.3645 4983.9106 2845.146 2845.146 6883.1136 12336.2437 7563.4539 12453.3053 10988.1449 10669.2832 3813.3512 5658.3486 7719.9223 3593.874 5531.9879 3458.3842 8237.8259 3179.6324 4730.3169 6299.4339 3551.314 9976.8947 389736917 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 10798.1385 17656.527 28131.9249 9706.4649 50184.8991 16234.5305 6971.2 9787.9769 1949.4368 10328.8211 7515.4903 47232.2776 182642.1682 9922.2649 11653.4673 13046.9428 10407.6275 10407.6275 5405.9069 10946.8023 8183.4319 6849.2409 12017.5894 24363.9626 2884.1683 6365.4202 19549.2294 3265.2001 51362.6325 15121.0423 14722.5121 5698.179 119540.9403 7224.7955 4488.3393 11529.7493 308212913 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 23708.2269 12728.6901 7670.4308 165301.2568 9362.5788 7662.1332 9157.0715 11366.5957 352808.3308 9462.6534 6235.9536 16799.0844 22283.8227 22283.8227 7164.4948 15296.6884 15204.071 84577.8676 36448.9736 6307.9433 12182.4214 30062.0129 22005.9798 11078.3015 12363.0665 16614.7316 11670.3671 8891.8518 6961.3982 14218.1712 5729.057 6038.8163 111919356 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6356.7723 4548.4645 7976.0902 4457.3173 4785.7699 3359.097 4490.3611 7043.2641 4261.3169 220649.895 5906.6867 10876.3813 4904.0459 4904.0459 5375.8928 11790.0832 7642.4743 7995.285 11521.8789 9132.7431 3685.0336 4427.7291 9478.6869 4439.4508 15852.5443 6990.6628 8876.8666 4220.2634 6156.1948 9160.8219 2988.9387 15698.7036 347013702 phenol_oxidase Carbon Cycling Carbon degradation Lignin Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 10745.8044 6751.184 8891.8831 5319.3127 8393.4305 5107.9559 6030.535 10310.0944 102636.1462 23379.2374 7870.7219 7529.2364 4640.9973 4640.9973 2892.8892 13355.4282 10064.4128 5670.6814 9164.8995 8526.426 3916.4349 22831.9835 9259.5115 17972.4275 13640.4604 14591.9046 9088.7087 3945.2358 7392.4386 9094.0769 7980.2796 9595.3115 334894510 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 5589.4827 7937.5501 5851.7592 11604.9504 3273.1012 2371.2903 3338.6793 9398.3121 3291.2245 118131.5428 6655.6426 5508.6641 15816.5748 15816.5748 4501.2358 12214.8612 7625.4161 4723.3942 4219.0183 2433.6428 4389.3182 11452.6797 2842.5371 20381.1981 6253.4746 9592.8991 3961.6701 4606.7214 4509.3365 3710.5445 5562.6835 126715659 atzb Organic Remediation Herbicides related compound NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4112.5891 24773.8745 2900.9979 3248.4823 5644.9981 8317.5077 3171.294 3171.294 2769.7119 2757.4173 319805038 TIM Carbon Cycling Carbon fixation Calvin cycle Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 107742.9251 18613.7318 206695.287 66210.7024 132522.8062 26987.2305 54118.2705 39354.9602 30008.7437 122303.1945 37111.9099 57322.6878 2243804.5967 60409.7904 48659.8473 56328.8945 72616.5359 72616.5359 83272.7377 68678.5659 47921.1619 34122.135 202827.3184 60509.6828 27498.0665 42356.0306 59131.8108 73875.106 102407.0135 64225.4254 139544.6159 21575.9792 38733.5544 44830.7504 21859.6616 54714.3851 66766709 mdld Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 8981.1356 12842.9305 12286.0269 11037.1761 8557.9844 5018.6616 29027.2563 6909.9169 102014.8337 38877.8599 130284.8999 15200.186 10090.8785 49337.1101 19534.4354 19534.4354 11159.8103 17542.9774 15486.4048 16344.4336 21584.8229 13362.6568 7458.8379 4504.269 23634.0566 4692.404 16894.9626 11945.9162 13732.7217 8135.2682 58608.3237 8132.7331 5638.2916 8859.7395 28919715 ara Carbon Cycling Carbon degradation Hemicellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 7274.3846 10265.4422 2912.328 6389.7088 5002.5378 8764.8742 13688.2625 7061.7514 241669.3431 4986.8089 6604.331 13154.8559 4860.8082 4860.8082 4750.7326 10447.5994 8721.9775 50520.4832 20826.7846 16710.1066 3660.264 9827.5591 34174.9476 10550.645 35181.5202 14697.5965 14846.5699 5282.4023 4489.8603 314577.9291 3256.5995 6390.9245 4406507 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9680.9726 7943.8822 3949.5575 15084.5232 4978.7189 5968.291 8433.3519 5448.5191 32871.2054 13493.402 5046.3366 198575.4951 13716.5046 8305.7612 9188.7443 4583.7691 4583.7691 5104.9683 16495.2 7915.9042 12975.537 40597.3712 12011.8342 6069.2412 13373.4516 10177.623 98360.8077 29290.5462 8098.5447 12554.0029 6911.4095 5898.4722 7687.2582 5379.077 20528.4422 169762310 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7608.7406 55046.3202 8127.9739 9463.687 10730.4086 56700.2857 33059.0064 16259.42 12608.5659 172773.1245 9352.3909 10678.9247 14186.0991 7473.6744 7473.6744 44784.9077 20625.8535 8540.1534 17380.3408 29850.968 12351.8777 11290.2646 9548.7409 10391.7066 41120.7391 22307.0612 19333.4979 22472.9286 10384.3087 10279.0268 11087.6953 13745.8013 23678.0685 14209680 chrr Metal Homeostasis Chromium Detoxification Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 24788.1138 9488.2016 9208.569 23968.6296 8324.3801 9635.6134 18681.3397 126461.2932 10584.3388 15624.171 34295.659 1173587.2922 19784.492 17227.697 8603.1816 37617.8792 37617.8792 18083.3816 45546.8237 14772.3713 11739.1553 29824.815 17503.6221 10451.2761 8769.0801 39174.5854 27061.2781 55508.5441 15445.8342 29202.3834 9143.3875 16940.0911 19930.2152 11182.8618 15299.2354 311230829 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 16795.5251 171375.9458 6933.2082 233739.1934 7307.2787 14104.7288 5233.7969 10807.051 34812.3998 38946.201 361344.4592 33168.3466 21221.4041 28357.764 10794.0564 10794.0564 11226.8805 30164.2854 15052.0227 42074.4303 24729.1895 18475.8538 11032.3081 35996.4199 20517.1221 8769.7572 34017.2201 39407.741 21004.6507 8108.9661 12548.0574 14799.5964 34855.0652 16927.8595 359774213 arsc Metal Homeostasis Arsenic Detoxification Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 44369.0504 5220.364 9278.0512 5826.9627 5785.6397 3923.9329 3923.9329 9297.1229 4858.2565 296845173 ben_bcla virulence NA NA Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 20600.9026 7220.5814 2173.6709 6939.5526 2948.5582 3418.3644 5010.6753 9278.3762 132501.8516 12967.3382 7237.6219 10772.5264 6191.5986 6191.5986 9075.7421 11619.0919 5236.8873 10007.0334 15805.8366 4378.81 5119.1948 21744.0047 31530.1916 7908.3958 7430.5667 3763.3201 4444.9298 7679.3004 2555.749 6837.4676 393765774 phn Organic Remediation Herbicides related compound NA Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 37452.631 19182.2361 54667.9593 145022.3144 51828.2273 51744.0567 11665.0401 51203.2951 13840.8731 47186.4132 172870.7454 66520.9945 3448504.4033 61382.9951 316880.9705 155346.2371 103855.3261 103855.3261 34493.3331 66826.2694 43137.6453 51166.7033 111073.8226 13692.0753 30788.971 49786.2047 94528.1685 29773.5848 93627.4876 126321.2251 83299.2551 26364.8681 37410.8265 71575.6785 20676.1951 40251.6336 386772996 amyA Carbon Cycling Carbon degradation Starch Brachybacterium paraconglomeratum LC44 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 202073.3095 46745.88 363957.2778 145544.3308 711115.8725 1660788.5378 157363.3902 212917.2713 173857.5618 157270.0587 682279.0469 246775.8567 6428073.7174 732755.3572 810067.757 395445.083 294873.8045 294873.8045 181621.4363 262033.6353 140398.8596 138264.6019 217525.8414 136593.1624 76240.1848 374213.8784 317519.3659 90233.909 333807.0282 329147.0455 248121.7875 63439.544 176507.3735 262525.6664 80562.1665 211680.1444 15788837 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11546.6742 5702.2121 10219.1025 7019.4021 11367.9311 7821.7095 5853.8793 9213.8849 11154.7867 3743.934 247995.1067 12501.411 8298.6285 7362.9527 5944.9372 5944.9372 8178.7784 17030.0681 12820.4533 12895.0253 13607.2666 15462.3516 6627.5458 6496.1965 18431.2381 5667.5081 22486.7113 7837.1704 15441.238 6064.5533 8055.487 8744.9465 6996.7021 21276.1089 296415361 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 21787.5583 16609.6641 19607.2073 17324.5183 20075.9532 416954.8492 17001.4433 37115.5949 18486.0813 16690.7385 10076.0035 443288.4477 22361.634 22547.0583 20104.931 11990.1069 11990.1069 13323.1279 27412.3819 17063.5752 17004.2317 22703.6862 35775.1898 9441.4299 9167.7615 20660.0976 8327.5574 33634.1278 8254.098 22842.6693 7271.5436 11894.2248 14053.1144 9562.5869 21871.1792 344343444 FBPase Carbon Cycling Carbon fixation Calvin cycle Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 27519.3476 10641.734 3989.0949 2261.4782 2814.1447 3249.5717 2270.0861 118259.7749 4660.3806 4605.4535 8676.7232 2818.9101 2818.9101 6370.2639 4025.2513 51634.4125 29491.0529 2496.5658 7136.0639 2793.9994 10587.6758 5230.8136 6330.9145 2357.333 2891.6284 2998.3591 340781799 merb Metal Homeostasis Mercury Detoxification Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 22282.0989 12164.9546 4009.0603 48381.8125 7804.8899 31448.2481 6060.9695 5945.828 11404.109 18792.2296 14127.2735 193237.1883 9772.6855 52653.4584 15208.0491 14435.1292 14435.1292 37593.9166 26541.4563 12966.2504 10746.6902 16401.8019 4247.4658 21944.9691 27296.7865 16480.9952 18736.458 51738.7145 19125.8646 27960.4559 35760.7573 20427.2487 14941.9425 15872.7715 15346.7184 39949020 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8698.4083 46672.5613 13409.9949 3101.1805 7856.3272 4597.3641 6980.4047 3015.4887 155574.9674 7882.9878 8228.5051 27716.0918 13823.2247 13823.2247 5018.5991 10773.8365 10478.4671 3143.6206 15533.8626 19015.1833 2787.834 28101.5004 12092.6654 13910.7494 3853.2895 5723.634 7321.8849 213692848 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum subsp. infantis ATCC 15697 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 89550.394 30532.9692 16823.8459 41076.0792 17899.0606 63169.8423 50980.013 58626.3201 27196.6961 38309.3162 57589.8743 824126.4541 38420.6348 37443.4784 113710.1206 82407.9386 82407.9386 22694.7656 175317.182 33263.562 51315.6875 50070.1396 478618.0066 30678.0915 37860.9551 68373.6075 85702.947 110438.5721 58150.8722 88055.1269 38245.1054 61666.1905 65563.3995 59311.1827 143393.815 29605798 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 116418.4595 28030.8537 102019.3512 104273.9895 95232.3422 33984.6546 34806.2733 150084.1979 240099.7191 118615.5829 90744.0981 135881.3471 8137002.6089 107653.7456 105295.2682 96618.1864 153661.3019 153661.3019 54140.5825 118768.0424 44674.5557 223194.9624 162699.0159 112812.3604 57062.3266 70636.2347 127536.4264 79889.629 276960.2123 176144.9162 94085.9046 55699.3434 85713.9604 118460.6505 205190.4285 332508.5993 197322310 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37321.4377 8410.7252 13594.8442 5400.2813 6050.3068 5289.6507 10335.3783 56657.9483 113467.1696 23387.5023 11535.2844 10755.8 4106.6357 4106.6357 4111.4147 17578.8743 9078.7343 10343.4348 13722.7712 23798.7838 5097.4594 7863.2513 13766.6167 6092.5981 32354.1589 17149.7926 17223.5851 10885.057 11889.83 77268.1567 4643.1145 11837.6266 90418486 rubisco Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 21719.5017 912323.4855 86352.0284 32100.5916 6084.5712 10394.5307 40638.4752 4862.9116 10133.2834 10171.3256 7891.7956 412945.4544 11345.8901 10319.9279 7324.2382 8770.3786 8770.3786 8010.7983 17653.3762 11159.3572 6246.0643 82407.7761 22936.4912 5971.9655 6772.4842 15943.4482 13239.7651 20516.6078 10929.6087 14832.8751 6511.5199 8187.2039 10619.1844 7866.7267 15805.4644 226355444 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 144659.3511 10118.8994 10482.6598 5294.6338 12724.5762 11897.686 7738.1255 17898.2523 27088.9399 50154.8089 1237630.7172 14319.4841 70246.2711 29655.9924 25268.33 25268.33 22030.8496 45789.0795 19264.5752 115568.544 56770.4329 21212.1423 11154.0607 16966.2093 23083.2711 17361.6109 48604.0097 25407.903 26186.1378 15087.3217 39939.6333 32555.8024 15536.5366 10594.2274 310914047 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8321.5307 5953.9965 7038.1075 9089.2979 5101.9364 5694.0846 4971.9694 5837.2933 90470.2804 7702.8499 4765.8663 4606.5916 2950.1367 2950.1367 4770.7113 9510.9769 5890.2316 32770.1302 6775.9468 29107.4477 4010.4424 2586.4002 7194.9409 2324.7646 12313.5558 4579.4587 9337.5118 4081.3504 3886.6151 3968.7954 3431.88 16400.8564 23821232 mer Metal Homeostasis Mercury Detoxification Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8874.7992 5874.8188 17264.7623 6890.7209 4595.3495 8173.0459 8015.0647 8083.7305 5259.1479 410010.0823 11151.1335 7382.6089 5357.7443 4720.7646 4720.7646 6810.6077 17903.1749 10564.3156 8860.0398 12833.188 8487.3777 4621.3415 5496.9742 15825.9751 67649.7634 18893.5622 6797.0573 13889.0126 4868.51 8233.2824 5828.5328 5195.6685 13085.4942 4406091 tfdb Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. TFD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 17018.0154 6982.7142 5422.9464 59025.311 4593.5981 5661.7149 7695.2267 11957.5322 41899.374 10764.6363 168926.5611 12853.3806 9382.764 13742.6734 10022.1818 10022.1818 4459.0655 16648.7152 11295.6494 14999.5591 21684.1671 34724.8911 5821.9662 8146.8521 35217.8471 14000.2552 31254.5433 22122.0243 17066.8995 5655.5631 7750.1387 10471.784 6108.2539 11896.2087 384918223 amyA Carbon Cycling Carbon degradation Starch Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 500200.7597 198203.203 478946.8202 319728.7053 82840.1276 68661.6492 123525.1162 167838.6635 342902.1946 163405.5175 255203.7126 198250.8343 4798585.0718 229999.2715 226866.5728 425822.7497 323752.3923 323752.3923 162689.8535 299590.8181 188803.2289 407515.4173 475173.355 211667.6199 189635.4838 161217.3768 182634.9977 192120.1226 538287.9198 201702.0764 237524.7419 150552.3494 165362.7826 232078.6555 127323.3174 594808.5137 388436127 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 41879.1201 22112.7794 7061.7189 11842.9316 16659.0588 6433.4605 10621.9945 8569.9109 15776.69 12282.9506 9561.4479 122006.2764 7630.7345 11067.268 14195.4982 5454.6639 5454.6639 3925.5808 15820.4843 9067.3345 3904.1129 33757.8993 60552.1259 4220.1335 12446.705 11347.2315 8013.2134 13246.1725 10679.2898 19365.8205 5235.4462 7774.7864 13996.5934 6660.4168 12282.8186 209500750 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19780.829 20117.6917 9436.7425 7385.6599 9326.6118 17530.5409 3827.5359 10063.2111 18299.2709 89173.5078 5425.6874 6440.4464 6751.6795 42613.6193 42613.6193 9738.6827 18817.9123 3839.2949 12201.9721 23620.1809 4517.3049 10522.5227 28234.8546 6527.9745 8341.7943 12566.7328 21341.0504 13152.8153 11920.8578 5049.2401 7398.6388 4813.0031 20385.0638 17385101 narg Nitrogen Denitrification NA Enterobacter sp. Lgg10.2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 21881.0474 11208.6151 4500.0357 15884.5311 8441.5229 19390.9356 10615.1597 10584.3853 9188.5095 349359.9628 7520.9124 24017.3687 14864.3232 4798.8355 4798.8355 13762.2853 21519.6186 12991.2819 8597.7304 26705.1554 6990.3395 6806.2309 15156.1039 12312.6451 23533.2326 32357.4589 15657.9009 19890.6884 10825.2155 10513.8347 15641.8821 10760.2503 16170.5563 261371546 pme Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 13067.1792 6496.1485 2421.0167 4047.7275 3544.3657 3541.7676 59487.1735 5498.0451 6096.7068 6036.6104 6036.6104 8139.8725 3774.0459 2583.5084 9490.9205 2402.9556 3966.4422 1961.694 3516.3181 3892.8558 159684.76 88787238 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 15807.2049 13902.7285 40971.7313 7059.255 8488.4919 12553.6118 9580.2262 37814.3475 7144.8631 225525.9715 12082.73 19959.565 18298.8097 6672.7623 6672.7623 7507.0914 21067.5151 12129.4325 13872.7741 14076.7816 17934.4127 5314.578 10752.9147 20711.8299 7159.9241 25463.8557 21000.5269 17454.87 3021.3645 6737.9487 11315.1254 5487.7581 15375.2377 109632821 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4717.1177 2431.2604 3642.4996 61734.0693 5426.5861 9177.4663 5252.2966 4491.4845 4491.4845 2995.1443 10000.9555 4917.9387 7732.4243 3195.7031 18323.2174 30670.337 5462.8741 15174.3226 6897.9341 6135.4668 3813.4486 10143.967 5371.0825 2651.0637 683907.1863 84386977 dmsa Organic Remediation Others NA Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 10533.811 35651.1621 5159.526 25918.1191 4379.8352 5725.6623 30031.6045 4733.0439 16178.9915 8369.0674 14674.387 127980.2839 14041.071 30424.8542 13998.2497 19437.4599 19437.4599 24932.3806 23923.778 12159.9379 32500.1287 33760.1837 9868.6637 8463.0784 15319.0207 15780.0484 43288.1792 33800.0991 43869.1863 11489.9906 33225.0096 38562.4751 10838.7661 25471.289 270342688 terc Metal Homeostasis Tellurium Detoxification Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 93652.8299 15941.0495 11417.1394 14927.5896 9547.2958 21117.1349 34369.7097 24616.5324 65909.8387 52966.5246 31501.1049 199510.1404 33794.5637 70296.6815 31078.8674 29736.1145 29736.1145 16789.5558 54543.2104 20409.4113 47321.338 29765.7415 36242.4857 29169.5166 19051.4451 18841.3814 43228.8978 83180.8123 24629.5458 26619.9083 12729.9504 51012.3902 24185.3254 101751.0159 162382.7774 37622237 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 134640.2251 41082.5255 76271.1312 69567.5571 79798.3795 18785.6629 61600.0662 49697.9891 108246.6803 53065.8455 83976.5117 52190.8732 1623722.0626 104118.4699 78672.9447 83788.2914 63622.5415 63622.5415 47905.3488 108630.6506 66761.0466 68432.0117 104864.4643 98599.2272 43608.5345 45567.8823 76628.9197 40151.6854 127619.7626 87495.0898 86871.0483 141231.0673 75207.637 80574.9569 44352.958 87769.6933 114767349 mer Metal Homeostasis Mercury Detoxification Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 12092.4474 22567.5544 4315.8729 6570.4145 20715.2348 8518.7205 4862.3559 22793.1644 6741.4221 17650.782 10530.2823 10530.2823 13709.9436 15592.5517 4612.9812 32310.1492 17730.2595 166679.1717 25499.6909 20994.0832 7235.6604 3612.3598 21106.3485 8009.9263 23913.9113 78980.7966 44882.8828 35345.8189 37380.3302 56963827 atza Organic Remediation Herbicides related compound NA Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 5583.4321 18795.7081 12780.6911 19549.7463 8351.6459 5979.4337 9008.5243 4078.445 7089.9325 11114.6483 146106.7036 6058.7923 9047.7379 10867.6268 4358.8794 4358.8794 3958.9318 9554.787 8014.2166 7712.5405 9646.0811 7180.8254 2911.7125 5179.1277 11152.4352 2795.3027 12720.6985 6242.0741 10401.012 3573.5432 16917.1671 4649.5066 3708.5817 12655.764 302869388 xylj Organic Remediation Aromatics BTEX and related aromatics Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 21155.5062 1838227.3095 531755.8787 13879.9688 16666.4877 13660.5092 8282.8045 6619.9945 7425.3624 13790.9424 16041.9146 13252.7272 137697.2188 23052.9377 20647.0958 30406.1777 11866.0337 11866.0337 7038.5966 29730.2441 12252.5582 259904.6561 14749.2834 9965.2334 7917.3642 8345.009 23417.8676 6755.906 137757.2573 20052.5161 16114.5596 7065.1663 15645.5678 20732.3241 11601.1111 653123.7387 88809438 urec Nitrogen Ammonification NA Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7765.0117 3494.2312 3590.1568 114555.6041 30720.929 12436.5467 6688.3032 132968.5897 10081.7761 5438.4723 4220.7147 2309.2698 2309.2698 4953.889 9184.5011 7743.9092 6624.0563 18139.082 7854.9762 19058.8866 4246.237 9582.029 6376.3366 37953.5342 6507.806 11327.9715 4210.051 5966.7316 81510.9453 4245.2908 14082.3046 260223332 phn Organic Remediation Herbicides related compound NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 17816.5024 20157.2922 7996.9034 8136.06 5633.2005 6773.5939 3848.162 66402.0655 10666.641 6396.2218 4814.7766 5653.1233 5653.1233 4318.5638 11729.5951 10086.5906 11266.7627 13781.8594 7589.2927 4401.1739 7426.806 14989.2974 4984.9224 44507.6146 13401.2643 12734.5458 5318.838 4110.9428 8586.4135 6204.1234 21586.1654 354582849 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 75852.984 51155.6673 9587.5475 13320.2853 20281.4575 124856.2607 90630.7904 57809.5828 133090.1959 67547.1366 107654.6979 1650993.2269 70794.7685 90390.4245 117534.1466 55962.3834 55962.3834 16251.4386 225376.1578 189734.5125 129370.6511 52856.123 62974.4988 53136.7482 54744.5802 34550.465 55790.2234 113662.8703 41769.1334 100516.0996 36071.1919 68786.4101 62174.4376 72516.8516 41567.3059 282899676 amyA Carbon Cycling Carbon degradation Starch Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 4537.1958 3560.4905 3983.9238 73599.8976 4298.821 5145.1282 3980.3537 5148.6131 2984.7374 11849.6519 4747.8044 5309.986 2911.7249 3289.8099 3283.75 2402.6103 5650.3501 336008955 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 5_1_57FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 6130.9095 6563.1668 3114.0942 3095.2308 3794.4809 81045.453 4980.9344 3858.2715 4513.8009 3763.7981 3763.7981 5146.967 9412.5758 5866.688 5731.2959 7538.1997 8188.1502 3678.028 2507.1766 7822.544 3106.357 10207.3674 16063.292 7128.0254 2151.2159 5049.8704 4704.6534 3539.0381 8501.3291 307742767 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 34659.973 26578.0238 10719.5927 20700.848 12947.6966 8315.9759 33929.3042 5673.6631 16227.0914 14542.4646 23277.1289 240898.6651 16319.5526 16050.495 71974.0129 23350.6211 23350.6211 11688.8169 38579.7543 11145.9076 24340.974 62137.8871 15143.8839 19098.5329 38348.3276 45432.7477 19742.6451 63687.7255 27529.7581 31568.5982 16033.3002 14743.2374 33622.7974 20386.9266 29006.6813 66801829 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 30169.6072 27659.5334 31190.2906 21557.8356 14519.2378 38925.7213 22341.1653 20048.1506 60941.0969 17865.904 428079.1453 20374.8862 27688.381 30741.0535 28414.7018 28414.7018 36745.6616 40891.4083 17285.7225 182727.4764 44809.0193 43017.77 18475.9568 14732.9877 27767.9555 15193.679 37073.5881 28996.2565 35232.495 12398.116 23687.1424 22021.6471 16902.1312 23369.2512 334889105 tktA Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 101989.6082 31232.8332 45682.1158 26072.1553 55007.8239 9774.9896 57376.7005 67649.0635 28644.2934 48328.3949 90530.0624 69429.5478 3303292.0299 52158.9505 136648.9586 48550.382 156819.9815 156819.9815 53583.31 138484.4761 59724.2832 106570.4624 87850.9003 37657.4428 49592.4558 99579.0202 75380.6164 65922.7152 177651.641 69353.9819 57354.4775 109715.6877 60869.9731 114718.9276 81977.5493 339159.7819 371948029 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 4812.7088 9979.8169 9374.5005 8933.095 6666.5451 9370.8773 3866.2035 5749.5786 6205.5279 13164.872 106523.3593 7008.5172 12252.5747 10898.9114 5034.391 5034.391 5243.8119 15206.997 6969.0383 4089.0634 6163.8634 5308.2485 14513.0027 4817.3759 12993.9419 4214.4558 15885.8148 25710.7108 10557.7434 6524.6895 11502.4611 8419.7976 64179.1296 12417.3002 116694916 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 131315.3514 13056.2402 15878.1611 70894.849 11840.3719 41026.9482 151725.6617 23615.8785 22893.2231 36758.4491 70778.4691 799658.7606 39839.4776 82976.9063 46149.8301 63877.9749 63877.9749 21253.1766 70353.9145 35931.3292 50239.705 148651.3092 28550.7787 28434.2931 45226.3096 18804.5277 33655.416 75960.8588 81543.6943 58435.9223 63576.8464 64698.6802 50046.9496 50082.2339 85066.6375 255922314 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 7384.7725 34020.3425 10912.1893 11248.0486 14443.3482 10047.1825 14624.2661 24149.2531 8618.2006 2919.8698 82258.5259 4283.068 11402.4134 5571.9134 5571.9134 3636.9926 8831.0483 6416.7665 41609.3291 4558.9353 3797.1777 7336.2799 6198.6058 13006.9145 6869.9593 7048.8267 4536.7979 2893.4898 4589.4311 4585.0364 53007.2343 340027690 urec Nitrogen Ammonification NA Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 8189.6757 7155.9535 3078.1863 5932.4883 4159.1514 3174.2934 3174.2934 6176.2468 5429.1799 2706.1028 2905.2833 26835.9051 3127.2705 28542627 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7802.8891 8381.8951 2738.7026 97009.1887 4538.2411 10901.5776 4694.4886 4694.4886 6540.3909 4649.4118 3051.2716 8176.6931 10238.0884 4130.2599 6505.9064 3556.5297 4921.8819 5712.6861 71402610 nasa Nitrogen Assimilatory N reduction NA Lyngbya aestuarii PCC 7419 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 83360.9125 82593.7821 27867.2862 61963.7251 8975.8311 23919.8159 18832.4978 26611.7454 42470.3533 36777.9731 45185.7604 1351984.0962 162681.3192 59715.7099 34090.4561 41389.0452 41389.0452 67925.4769 67468.0645 25480.6046 64821.0561 75122.2233 31469.2847 27076.9592 28355.7391 40773.122 24101.3109 98871.1255 21280.2429 56475.1456 19135.6382 43714.6394 54438.6693 26128.8851 43102.6645 254270048 urec Nitrogen Ammonification NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 50795.5288 22378.652 11147.717 16317.4675 7639.1385 12212.8417 48533.9697 20509.9919 40250.6356 24258.5218 43539.2159 950499.2294 34418.3193 147386.3547 46617.8614 31268.8012 31268.8012 24586.4005 86634.5361 20408.9236 58996.1647 35060.4546 29289.2956 86381.9335 37002.6381 40318.6283 43829.3466 135623.2817 30466.6964 36499.1395 54214.8559 42440.4519 34560.7005 33866.0662 28255.3354 149936208 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 35512.1179 35722.914 13436.3011 19076.5867 90214.1604 25472.0759 30094.7119 73222.7284 12697.3307 35148.5407 39187.8082 104670.6891 987954.0164 49328.8896 49951.2691 79040.3731 48952.3239 48952.3239 19236.1689 98222.1089 48731.2151 45404.1684 26612.9426 36510.8698 20085.173 24874.6934 155544.4318 65905.3608 86576.2344 66891.1062 70941.8328 30051.2175 38924.2505 52655.395 20004.8868 16692.3086 260849930 xylanase Carbon Cycling Carbon degradation Hemicellulose Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 6357.6653 11561.1256 360264.6586 20110.7528 2482.8687 3998.9072 4955.9472 5557.4905 2714.8091 123083.3268 5344.2459 4879.9647 4879.9647 11332.8217 5087.9274 7645.0029 4648.1054 2854.3878 3201.4375 8365.8425 2602.05 14519.9679 8744.0281 13077.665 3022.989 5357.6483 9097.079 4874.7051 6807.7273 261208528 dehh109 Organic Remediation Chlorinated solvents NA Paracoccus sp. DEH99 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 42869.1563 34471.1043 16870.4404 21747.343 6799.8416 9636.041 14954.3917 20000.3155 29601.9973 45419.7839 30578.4486 278719.6692 27070.9854 49108.1402 36923.3233 30163.9842 30163.9842 13822.9773 50423.513 19358.2407 67496.1325 62668.8131 34527.6756 16245.9885 20794.2535 28342.507 30289.0464 91432.3705 50000.5748 74462.9954 13129.8983 55594.1157 38264.7979 20485.5603 38057.4316 407280084 bend Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6405.2995 5139.0285 3622.2621 5594.8574 17876.7865 38387.6332 3467.8952 4153.1765 7512.9027 13038.5131 2866.4613 2866.4613 3644.2777 13278.308 6386.1275 5203.5219 5352.4133 4142.543 10567.4652 7672.1095 8879.4389 7356.9447 7356.7244 2436.3427 5061.8285 6174.1841 3089.6807 77458943 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8990.0108 8124.9417 19323.6961 4582.3007 6345.9413 7685.914 3591.5685 9253.1421 8056.8556 9909.4273 179048.7754 10479.6065 11124.8133 13749.107 17729.6942 17729.6942 5782.4941 10652.245 6371.7859 5377.6202 10076.7764 11040.9666 3619.772 6435.519 12939.5785 3983.7139 20635.5638 11384.29 14428.2284 4855.4591 7586.9544 4829.3107 3030.4858 11882.5014 384075171 urec Nitrogen Ammonification NA Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 23172.6313 253826077 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5445.8359 503271.9916 10349.9346 7597.1529 13799.689 2716.4172 3506.0229 6013.776 3288.4925 70860.7459 5243.2281 4451.6154 23053.1612 23053.1612 3171.7742 16125.2415 4568.3442 4805.8371 5428.0043 2330.9044 4890.5896 15888.4517 2690.2084 8833.099 8512.4282 1876.5276 3236.5383 8004.1623 2422.9861 9503.9481 145319978 urec Nitrogen Ammonification NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 6592.0707 107129.4714 16056.5924 131293.5017 13653.6197 2041.84 7762.2158 8630.8795 22578.0717 69564.9745 8318.6011 23162.537 8360.0666 5748.113 5748.113 8976.0258 6452.4091 3849.4132 6923.0435 18150.7449 6601.2996 6962.0879 18848.3522 9702.2687 26719.3877 3564.1494 6101.2527 54425.3297 15855.4026 22003692 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 33975.134 4947.4776 15775.2261 2868.5814 4596.8893 4189.698 3940.1439 5428.8293 2989.7365 3809.6295 2432.2802 2963.8346 4845.2918 3320.2381 164455684 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 26444.3341 13308.5162 16461.9426 20429.7304 1467099.6479 10479.6625 78342.555 10656.5223 49074.9187 32692.8244 12736.0987 443532.8099 15893.9124 16471.6525 18350.6482 27809.1705 27809.1705 15143.4542 27320.2854 17744.2641 20412.1545 54840.6062 8420.9099 12682.353 16818.2215 29724.6366 50415.716 49309.2337 100890.7343 32224.3481 22881.428 40424.0507 21299.7134 22798.5037 24250.0498 358238281 poba Organic Remediation Aromatics Aromatic carboxylic acid Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 125038.6993 50032.9108 58487.1075 82617.984 59130.4557 16864.4496 177013.4068 141822.9566 34572.5958 126858.6511 66809.5595 87506.689 2102733.1638 93600.4386 159285.2661 236910.7281 155203.3145 155203.3145 55191.7797 146973.691 60683.6009 168977.0664 85291.7063 62711.4977 114093.8565 61065.3284 55631.8952 86096.8494 209158.2426 76423.0332 87461.2784 59069.6369 60479.0184 130879.0617 60367.0987 60715.957 76058226 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4043.6325 2125.1254 4862.579 69974.1791 1879.3053 1879.3053 3446.7633 5172.0895 8012.3788 5215.6826 5461.5909 2075.448 4120.978 1860.4984 383770055 nitrilase Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10321.4648 5992.0731 3934.306 9675.2957 10838.6766 7321.7824 20282.7883 16299.4865 131645.6832 58102.7191 30509.9503 4364.2564 4962.9562 4962.9562 3708.8242 16497.2554 11433.2952 11097.4233 34650.5025 8160.6301 4302.499 6576.2849 5302.6257 6281.8639 15162.1586 4086.469 9469.9307 21771.8373 6560.0942 24617.7413 7043.2884 8559.279 68342698 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 37735.4597 20507.3488 37838.1772 984681.2731 178936.1352 46390.9216 34211.9642 166106.7365 45339.5517 91644.676 40400.1556 106860.7538 935720.8291 106828.2117 78655.3847 66878.0938 98207.9774 98207.9774 42098.7788 72911.2145 41418.6344 105977.9335 139471.2635 501442.3347 82575.396 57910.3154 70442.4395 150989.3789 119446.4724 128618.664 194028.3033 83527.8361 50704.5977 55321.3657 105371.8852 142350.5146 296937373 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium sp. py148 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 43570.6329 12273.289 7748.9214 3257.6233 9784.3494 1942.2857 10182.3083 31677.4118 7119.7517 201468.4914 13484.1401 6585.5339 43732.0925 13163.2444 13163.2444 5085.4071 23375.8821 8103.1129 5405.7263 31931.3822 12406.3469 5320.5325 8277.3815 13416.4879 5819.3783 18864.0956 14938.2583 23265.5328 6370.6679 10535.1759 11487.1767 17044.2941 77202.3579 82947718 ppx Phosphorus Polyphosphate degradation NA Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 27547.8744 15937.8426 114679.8475 43146.5523 225206.7655 60774.9075 13246.1132 80302.8136 10688.3422 96943.6043 48084.3367 31651.3572 852553.5135 53456.8251 66018.6307 106130.4602 45667.7944 45667.7944 26848.928 68085.3484 44694.687 21812.1803 33974.3923 42505.2767 16567.8706 34980.4953 136904.8208 28183.6642 187788.3764 86622.4047 113511.381 33336.5814 44616.3235 46414.8948 26744.6704 30658.1112 298554219 amyA Carbon Cycling Carbon degradation Starch Listeria monocytogenes EGD-e superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 17238.2084 10282.8455 13638.885 11636.1878 9977.584 7702.9981 11270.8451 17137.401 8283.8729 343781.9834 11248.519 11995.5726 13770.3935 9047.3738 9047.3738 10407.8379 19861.6591 13310.2256 48939.9664 14109.4982 27534.3895 6870.4033 8322.0361 17966.4673 9384.5924 34866.0863 20714.078 17254.1013 6234.8739 12649.3613 11106.8111 7052.4914 18403.4202 351680500 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5601.8167 2110.7131 2812.5892 3048.7942 7215.1618 2883.475 82089.0224 5758.1171 3745.8923 2558.0941 2558.0941 3522.4726 9272.3154 4017.5143 4609.0343 3870.5639 2426.8058 2187.7905 6641.5414 9110.4298 4090.5858 12424.261 2290.8647 2672.8845 3036.3347 1982.5423 7679.0721 161161894 rgl Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 28573.9456 22456.7168 28634.8377 33322.8423 6785.803 9649.228 10689.3778 25517.4478 16167.7434 13466.1468 15130.1013 343391.5823 52633.6528 20053.0917 33394.5541 17973.8585 17973.8585 10710.6971 45847.8393 26908.5968 23538.169 30073.8615 13253.4434 25211.3542 18222.2314 43536.3831 10501.3006 78145.2045 20547.4642 24464.7207 17191.2062 29433.4088 25062.5576 6979.1996 22532.1382 373894572 urec Nitrogen Ammonification NA Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 12408.1099 5887.2657 9680.1339 21393.4372 13417.7919 5617.4102 11487.3936 13524.9802 9748.7802 157140.0122 15574.9739 10497.3735 11053.458 12248.8599 12248.8599 10969.1142 18785.6168 10006.9666 19669.3892 12477.7842 11093.9427 37201.6716 12852.9869 17065.194 15092.0482 21190.2293 7826.9984 16944.5155 10644.5256 7816.2893 11983.4091 10775.9436 14478.9201 28920527 axe Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 63211.3864 13705.7689 28898.6706 90530.5832 31244.546 11061.6953 47944.1495 39214.0422 310606.0641 50345.0705 46135.1989 48929.9654 15688304.4332 101842.0009 54488.3658 126327.3641 80866.3751 80866.3751 30322.908 62859.7745 33764.0699 62716.0136 44365.6836 153182.695 33340.2741 45310.7043 81521.2607 25783.3026 76701.3022 38182.9222 65451.2211 20935.8823 46231.9264 68566.9866 23933.3722 44872.7657 76164407 linb Organic Remediation Pesticides related compound NA Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 21003.1072 10280.566 10696.4975 3454.9195 3904.4264 3278.9845 6147.753 7483.7946 3424.8175 106592.9399 5802.4262 4463.9696 3469.3955 12168.8715 12168.8715 5065.2064 11009.5897 9098.5824 8218.1789 8642.4605 6995.5621 3437.4978 4037.0129 15867.8618 3164.3925 15781.9553 16864.0899 9632.7582 4568.0911 5969.3587 7285.0627 3841.6485 9639.7249 347734996 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 283698.5431 348190.0163 112959.7098 1702056.0041 190117.8942 86421.7366 65360.5174 476121.3481 76909.2522 166310.8141 134998.1686 99591.2949 2278988.3691 340321.9712 191478.257 329497.044 195471.5987 195471.5987 77620.1862 154558.7952 107686.0381 133450.072 202912.724 153848.6045 151110.5038 87360.0654 832334.5362 190051.5781 207589.3602 358397.4833 138483.9335 129034.5895 72285.6769 99140.746 423332.8995 423968.3869 74056076 SoxB Sulfur Sulfur Oxidation NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 5119.2182 11657.5449 2615.5237 3206.2259 4544.7276 25028.9437 4535.7175 103153.0363 11829.5896 6075.5801 22358.3747 3703.2902 3703.2902 4022.7024 10950.1942 11148.2177 17801.4979 10544.5884 6988.9781 2625.5291 3646.9288 10333.2865 4346.2165 24180.1511 8398.2767 12221.1419 3803.5312 6823.3937 4950.6044 4553.6364 19285.0605 152981778 soxY Sulfur Sulfur Oxidation NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6313.3443 3748.374 4837.9651 3938.1202 6487.8833 12010.43 1783.154 4931.9991 327544610 alkb Organic Remediation Other Hydrocarbons NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 95300.8934 8448.8217 15130.3978 8627.1857 3090.666 2538.8095 10958.7654 8126.1993 30419.1981 92612.0736 152604.7791 12166.0824 19054.392 8217.4566 8217.4566 11371.3415 14309.378 7254.6869 5155.7084 7668.3493 11978.0699 10594.8477 6506.8846 22119.7816 5190.8488 50593.1306 38148.8629 11815.3297 4877.7618 12914.7563 19519.3996 3400.0324 913399.0452 320121894 arsc Metal Homeostasis Arsenic Detoxification Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 24048.6561 20404.5439 20572.2891 12110.8174 5951.2709 14691.5445 18611.717 13482.3336 236393.9001 13954.4563 7666.7663 44124.0446 6124.119 6124.119 9481.7457 23345.9551 9524.1065 9119.9541 31924.0026 12390.3316 9147.8729 17481.7481 14011.4974 11898.7641 88119.9481 13783.989 35277.3341 41366.8032 8989.8126 19116.2361 9788.7849 18812.7037 75259586 phytase Phosphorus Phytic acid hydrolysis NA Mitsuokella multacida superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella; 11836.5438 6129.2178 7141.8404 103741.3392 4563.2617 6844.8057 4746.9407 4869.2887 7554.0749 6697.4451 217463.6736 10917.8865 29431.5136 7371.083 5122.5357 5122.5357 4035.0379 16858.8274 8099.5743 19038.6477 16970.5722 7322.7937 5516.9456 6036.9023 8855.6199 4320.0037 14000.3861 12761.0193 10226.6213 11193.8728 12583.8361 14620.6099 3889.8556 8101.1089 157912049 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 5221.7258 4814.7772 14988.1902 33733.5674 3630.538 4552.5738 99837.2496 4811.5914 6323.5649 3648.9124 3648.9124 6142.2657 6663.1066 4570.4054 3186.1081 2946.333 8736.8985 2301.4266 11431.583 7719.0129 7787.3012 2293.7253 3316.0766 4898.9069 3880.1018 5791.1159 118706452 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 16286.3073 41374.0652 4774.013 3139.0994 23950.1881 2303.1273 12974.3369 24187.8041 11111.9999 140565.0839 4129.4163 42593.9077 18520.8997 26408.1561 26408.1561 5987.6052 15454.9292 8199.6906 31537.0785 13320.0813 8549.789 7807.3151 10646.345 9587.9826 6338.7021 239981.0543 26163.5085 19528.9478 9947.1589 9871.2263 7157.737 13877.4146 7116.2036 259021123 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 7224.23 19412.3579 66351.9397 7492.6814 3784.8057 11864.6799 16314.6137 22847.2699 12938.8585 38554.9403 114301.1844 27179.7994 15117.0913 12787.7428 11783.0451 11783.0451 26624.0083 12598.3695 9361.2442 7179.7823 34668.1735 7597.7857 4250.7526 9670.0061 12471.1643 28726.3511 112947.1916 17184.5684 19338.0907 9178.3827 9614.4273 8580.0339 4422.2114 87281008 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4331.6841 15249.2292 23331.9114 5331.8437 6030.6294 8294.3994 83720.9639 5398.4553 4779.9207 6406.3516 3906.7956 9106.8181 6681.3353 6225.865 39818.2692 3534.9085 6624.0577 3395.726 19774.1935 9097.2028 9598.2623 4085.8626 3797.2542 6312.3517 3392.4137 177842236 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 19337.6086 24360.9148 17710.7233 11704.3416 39258.9623 9688.9787 43899.2646 10655.4957 25106.6068 15194.6019 23460.3683 548299.8653 57127.3281 18657.69 18875.5303 28340.1034 28340.1034 9501.4129 54301.9687 20068.7143 31223.1753 20180.2077 23991.5728 15005.6415 20007.1387 92483.2535 17534.2983 46305.9973 29391.3842 24755.0054 22864.1198 15344.241 19912.1529 42090.8954 17393.0687 111220927 trzn Organic Remediation Herbicides related compound NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 17911.3202 112750.0206 20513.8865 17087.7196 5396.6988 3039.7856 7313.7723 2011.4549 10213.041 8984.2635 14911.888 5459.8241 8356.8038 16266.3318 18651.596 10555.8778 10555.8778 7752.3481 34079.956 7377.4117 5401.6422 13478.9408 4113.2448 3957.4015 47935.5422 18796.1411 7121.7189 335000.0778 14764.9727 19936.7596 34246.7318 10652.7566 12257.0869 3479.5652 12896.456 150029194 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 259480.0971 29457.3183 55965.8836 70698.5377 21789.1317 15879.0661 76185.0346 351597.433 31769.9307 69080.9103 74144.8615 65865.8624 1345317.3006 257355.8608 89890.3651 190325.9746 120977.0797 120977.0797 40478.4909 80467.0383 64781.3922 1210832.2666 184803.3135 130066.7641 60371.2802 57121.6324 87962.5123 199958.9173 184253.3368 71440.2242 71840.5686 69054.9003 48845.2167 131295.3351 223110.0066 66704.3009 359347147 alkb Organic Remediation Other Hydrocarbons NA Owenweeksia hongkongensis DSM 17368 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Cryomorphaceae;genus:Owenweeksia;species:Owenweeksia hongkongensis; 17153.8844 11567.7459 10205.5648 7363.7868 28113.3591 4967.2599 10245.6277 9817.6982 4416.2147 232468.995 12096.6742 9184.4689 6389.0572 4609.2539 4609.2539 8507.7252 16829.8696 10488.0437 14305.4435 12724.8431 11112.5431 5446.1459 6222.6583 14179.4969 11177.2042 21820.5701 13266.1168 17550.2097 6308.1472 8956.9128 9068.2248 4832.1963 15322.6758 257053509 xyla Carbon Cycling Carbon degradation Hemicellulose Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 54232.4991 18621.1464 14602.2185 37378.6041 42739.5169 31088.776 6845.6155 20873.2773 21319.7816 21970.6065 195774.0823 18155.6725 32395.9323 77065.4783 22621.6969 22621.6969 12713.4335 40234.5123 16770.2966 17905.6553 38700.2828 20952.0674 26410.9792 24735.2307 22135.6291 15151.1988 74277.6416 17602.8839 37170.249 44665.5769 15351.0058 47731.2727 21731.5061 18311.3297 117928077 terc Metal Homeostasis Tellurium Detoxification Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 43614.8672 57300.7323 36088.8388 9864.0777 8485.7658 14031.5676 13837.5341 23125.7035 47135.1806 35538.1981 649530.2324 44487.2667 27672.2496 36318.56 20485.8861 20485.8861 18318.6085 56237.8291 17243.786 74231.9073 84429.368 45352.0458 21204.7948 14249.9437 22214.0257 41952.6816 54434.9881 18102.6391 30600.5532 11379.8114 25962.228 63975.3291 81707.2355 22517.7829 46307961 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9165.045 90158.8593 17056.4261 6939.8184 33692.5632 4307.0857 7624.54 29429.5835 5720.1834 6793.0337 5969.0194 4042.7404 4042.7404 6196.2534 13786.1173 6782.7442 9155.5556 16680.4441 7676.0116 4569.6881 5226.2579 9404.009 5577.7469 29173.4127 12992.7533 11081.1086 4634.5227 8964.5303 7220.701 3634.0131 6160.465 219949377 terc Metal Homeostasis Tellurium Detoxification Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 30430.8427 36870.1122 24664.1533 16336.4217 9765.7974 74106.8144 37392.8027 28637.8563 50934.0965 87847.4725 119700.4858 383447.4895 31602.9287 32989.2948 43456.8693 72293.3029 72293.3029 24335.89 76912.3555 22936.1891 80150.9982 81608.8328 39717.5995 47699.4227 41840.2234 67779.8274 51885.274 107586.6061 43469.6555 51870.7262 22841.5587 31756.1471 43301.0156 42489.0237 37440.8061 13259303 mcra Carbon Cycling Methane Methanogenesis uncultured methanogen RS-ME32 superkingdom:Archaea;phylum:Euryarchaeota; 5270.9371 155096.3765 125434.0353 3842.7272 6090.7561 3104.4102 120774.7128 365981.3821 4404.1665 444875.1109 9324.3688 6952.0232 927620.9504 14348.9947 6186.4468 47497.802 7990.4746 2866.2452 5174.8499 7298.1101 3278.2681 5616.8349 3863.2959 4212.2291 7953.4939 146406052 tfdb Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 16598.0441 27880.6659 16314.4446 59417.6703 3425.2616 4610.2528 3391.4101 4128.7637 20988.2082 4911.9451 5608.034 5608.034 27213.6101 13658.5855 68103.0296 23486.0253 916731.2604 4851.1447 7628.3384 3044.7533 13051.7794 24063.5847 8715.5613 7755.5502 3587.0965 16607.5388 2979.6485 55415705 dcma Organic Remediation Chlorinated solvents Heterocyclic aromatics Hyphomicrobium sp. KDM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 30759.2138 31479.1645 23630.0678 54152.7773 7927.7812 49268.4848 26205.3268 15496.4332 104190.3688 32157.9641 24334.7394 418589.4891 62162.6241 23264.5145 17247.6123 22929.0394 22929.0394 189361.5783 66347.611 37684.8998 40834.6622 45310.8403 21293.1326 31955.3129 77689.2827 34763.2649 98952.0161 165369.6034 41459.0611 29971.6441 47610.4001 33845.648 43385.9616 21938.8954 55753.5097 125862066 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 35558.8643 19301.1923 30037.2725 21666.2412 10157.479 13017.8462 25337.0481 18284.3866 27152.4965 19623.9434 310741.7386 19226.28 25451.7067 26947.3942 13779.0942 13779.0942 16994.5343 60133.9384 29820.4894 32953.9651 33062.1903 24295.2304 12143.9646 14734.7473 31689.772 12982.1828 76519.6168 36649.5547 36771.345 17683.9974 19990.2163 20812.3685 31892.7056 47372.4873 26278928 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17945.6286 19587.7031 4479.6346 6351.6025 16193.3726 8153.9497 14542.3735 21054.3484 16139.9713 8549.8203 803857.0747 6877.4478 45244.5879 27484.7442 25280.0019 25280.0019 6952.8377 29788.2576 7286.8836 17515.5599 9025.0388 13947.0012 10336.5601 16984.948 14110.7751 26179.009 22794.3386 113548.1204 13790.4986 6064.7103 16366.6636 16288.778 19445.0506 253990.3157 126035125 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 11495.7126 83645847 chitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9104.56435 6104.1932 5440.2803 21685.9371 4253.29145 3086.9372 2530.4112 3553.3328 6755.5017 7790.9554 1007699.682 4799.9895 6137.5457 11853.5185 4201.8414 4201.8414 3741.6049 7382.0592 5310.6499 12955.1253 3403.1815 3476.0487 9546.3878 6386.6815 21880.2579 180558.9721 8943.9409 2082.636 3840.6713 3340.7879 4252.1524 392421304 alkk Organic Remediation Others NA Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 104700.4487 32538.2391 21358.4151 29586.4532 19997.1298 114378.2064 32148.3613 260618.4545 35114.9321 25800.8081 36033.5106 46567.0261 495691.355 68525.2902 57404.5848 78743.3271 61066.7868 61066.7868 17737.8274 71081.3853 37475.2811 33241.6103 37605.947 87287.0329 20308.0995 30127.1034 45939.6109 94722.5719 96577.4369 40217.2817 49104.7806 30650.1223 71628.0911 30107.4008 42431.3685 176098.472 300717325 phn Organic Remediation Herbicides related compound NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 13543.9693 13681.0588 3885.5692 4280.8417 2865.009 5333.8893 256684855 mer Metal Homeostasis Mercury Detoxification Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 4679.5819 65293.8338 4155.5355 25890.6454 11160.357 2185.2674 6593.4102 8630.9144 4672.972 2646.9416 202263.6022 7721.01 7924.2495 19060.8471 7238.8482 7238.8482 3350.6686 21447.5229 20839.594 6867.8519 2512.9358 4583.3623 15703.1694 5409.1429 20524.4685 5559.3615 16802.4973 4036.6155 4692.961 8677.2587 2661.7195 11579.0354 83414977 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Termitomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 6025.5956 9919.68 7387.2788 11082.4599 2398.8373 9622.6214 1929.1071 3448.9652 15745.1888 2578.8925 94504.9752 6713.4662 6640.3706 12568.2306 5206.4883 5206.4883 21556.6496 18380.2079 7770.4687 11997.2685 2514.5209 3454.3989 9589.307 3874.938 10969.204 6255.5897 13584.5055 3554.9386 5096.0253 5825.2521 3491.8076 10510.1218 284008729 terc Metal Homeostasis Tellurium Detoxification Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 4436.5749 4484.5082 13074.2373 2319.5383 73855.5416 4780.4702 6964.9816 149101.6774 4506.9101 5708.1031 7131.3679 2931.9582 2931.9582 3604.8768 11520.5632 5235.2399 6770.3021 11287.1272 4255.8688 3833.0464 3639.2175 30562.864 3605.3655 28853.1669 12350.5319 15107.7023 2609.8461 5682.368 6582.3028 2465.287 5637.9675 302881919 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7669.4433 10724.5085 7815.0558 2593.726 3130.555 7791.0993 2247.8432 132600.8817 7627.8929 13284.6499 10385.0575 2196.2792 2196.2792 3763.2469 14848.2708 5705.0668 8392.8224 12211.5007 11407.4755 3088.3492 2894.6748 6392.4704 5311.1537 14300.8452 4242.0971 10442.1688 4674.323 5365.2379 5825.3775 4709.6325 13874.0891 171996199 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 46610.6812 25687.3651 59566.9047 81694.4998 10997.8336 23943.8142 35381.7476 17930.6773 24344.6038 20286.3651 21596.8041 556040.786 53255.4698 21065.7566 49485.9303 26632.8486 26632.8486 28555.5952 36500.0054 62213.3038 23083.4968 54328.7999 85178.8518 25737.148 19311.9653 37294.1144 17760.7404 78722.2365 31250.5061 35712.1255 28910.7256 23751.9522 52048.5808 22331.9367 23909.4965 336301555 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4540.2591 6698.5425 21689.5246 15987.8642 4108.8231 5344.8606 6167.8623 3309.2232 7226.0748 6946.3636 7802.0961 3383.2946 3383.2946 3743.7461 6528.7323 5149.5704 3697.3484 4337.5051 2514.3889 9747.5769 2707.203 8636.4876 4450.3395 6931.9299 2871.4905 4349.3117 12145.1961 3290.191 10686.9456 251787711 xyla Carbon Cycling Carbon degradation Hemicellulose Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 110177.8632 25922.9393 190750.8603 7284.2036 22166.4793 60923.8662 23140.3904 18948.8337 58275.9167 60016.4662 2224502.5758 47585.4018 20126.0577 25724.4813 42906.4727 42906.4727 15752.0371 82951.2058 20726.9649 27254.1153 37881.6173 38570.0108 19896.8991 21798.5786 50587.3616 17694.356 63538.1959 14744.8619 36028.0533 17455.9076 25810.7319 26708.6121 40950.4725 22049.9397 169859107 pec_Cdeg Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 11189.9142 6288.493 23756.0203 9350.5525 3019.4588 3532.9913 3429.9946 3981.4829 5096.8527 177093.671 5947.0584 9264.1803 14356.8756 8378.1311 8378.1311 6709.5965 8993.207 4793.1412 3324.7266 5241.0298 12673.438 2679.0494 14787.6957 10391.6282 10454.0743 8677.414 4242.4715 6543.441 3201.0855 7984.4504 371486316 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6198.597 7801.978 14875.4943 17903.2997 4977.8927 3515.213 5694.7623 23636.9232 29719.8105 111414.3396 10197.9232 7480.61 10430.6542 3339.8494 3339.8494 8440.0328 19487.5444 8679.2761 6714.0253 40016.8635 13356.8533 8640.4563 4808.3081 13879.0161 4231.9767 13599.9963 13892.5187 19543.6636 5142.2091 6686.5378 7018.9367 5762.6811 13944.3261 145570075 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 86211.30645 18610.0681 18940.07335 8730.66235 21633.3704 20781.45505 42296.83095 25698.0413 17141.45285 13662.15405 489277.8602 18159.36 60952.2687 34158.65215 41978.32485 41978.32485 21043.396 34883.82585 16963.4104 24535.5436 41095.97895 23019.2832 16973.5488 11932.485 20248.3991 14369.07395 134810.5774 23522.4188 26027.8595 9232.51885 22100.9683 23125.97925 20476.09205 299821163 cda Carbon Cycling Carbon degradation Starch Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 5733.2423 5781.459 2414.238 3435.2318 6685.4138 4249.904 2261.352 70813.7264 3875.5825 5326.3397 2062.3509 2062.3509 4306.0938 8795.8382 5383.178 4900.1531 7870.7105 5276.1344 2254.086 6793.7378 9043.8246 5707.1046 12369.4132 7535.9613 8298.5851 2878.5126 4348.4668 5322.9749 3567.278 9291.7956 325952718 cellobiase Carbon Cycling Carbon degradation Cellulose Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 22057.9266 22562.9733 9963.6447 24573.4905 10750.2015 37368.4621 12816.5131 30574.1992 14900.0157 21001.7548 21348.2039 275650.4747 14691.969 28181.5716 24561.2619 26123.2483 26123.2483 12692.944 29346.8215 19681.9165 35821.8026 36986.5464 33015.9427 18514.9609 14184.659 21889.0867 8319.05 45896.5142 12217.4605 49711.1265 10317.2789 36649.3378 18956.9871 12818.738 69664.8582 116066381 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4099.7967 4598.7143 3852.6518 6913.4818 110143.3322 17343.2489 92558.1971 21979.4947 6519.0036 6299.5261 10140.925 10140.925 7142.7165 14024.988 5123.0664 9864.6232 5695.1121 5109.2042 3759.0612 7932.7828 25494.8719 13012.0758 9773.3099 13040.6222 3860.3313 6596.1125 7572.6836 3090.8134 6303.3892 83845564 alkk Organic Remediation Others NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 20443.269 13741.9489 9292.5963 11407.7475 12958.584 18236.6076 4915.3601 6468.6917 12643.2303 6043.4608 283559.361 13365.0436 19190.5434 181218.0426 8366.8165 8366.8165 8790.3235 16361.1686 21088.5778 21235.3658 10200.3859 15839.969 46921.8071 6156.8609 16558.9858 8738.392 30868.6486 15743.711 19153.0719 10578.8102 9192.7547 12465.667 8279.1967 19433.4478 319942364 nfsb_2 Organic Remediation Aromatics Nitoaromatics Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 3955.2305 5260.89 6322.9229 2635.7182 3295.3441 5752.0505 86819.3373 4991.4289 5199.5005 3602.3899 5300.87 6977.4325 2631.4091 2735.1176 6256.4947 2377.282 3833.446 5409.7622 2082.3902 3413.4656 6503.0445 2490.5349 21224556 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7892.5233 27733.3917 14894.2856 2646.5225 13253.6607 3769.7566 3221.7223 46020.1044 53288.0333 8960.9817 16936.1252 5150.9217 2524.6945 2524.6945 3273.5532 12284.8968 4700.4684 7269.7229 5713.5735 2370.6307 6456.7982 2725.5754 10704.3256 9560.9325 6061.4869 2073.3404 3202.3593 2791.8984 2989.8767 281355050 ara Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 108352.4417 11541.4997 64404.4408 4214.204 17584.7588 10507.4293 14517.8364 24970.4765 21619.2316 32367.6329 313558.4104 68584.0899 29083.1187 50301.4418 41650.2092 41650.2092 26826.9345 47558.1087 21856.533 37872.8351 126620.7164 36785.0985 20954.5438 23395.0302 13625.5743 14026.5972 43902.4885 28498.5105 33451.1627 9195.6262 26978.0875 23921.3006 14428.8893 52865.1391 21106440 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 71632.6248 48715.9617 124738.2962 38994.2214 153517.8388 27450.9565 369458.9552 90010.747 99585.4898 72032.2844 58011.671 64926.9661 15901614.6489 87579.8892 84298.6876 51674.8608 72867.8775 72867.8775 54953.4327 179498.512 61561.5542 104056.713 176213.2147 126860.2116 41701.8091 52039.1325 74641.4776 180805.1222 1120902.9425 72221.8615 82648.8791 94315.3003 352942.5957 69374.7023 47338.0433 218192.4464 162284183 amyA Carbon Cycling Carbon degradation Starch Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 66509.6471 29492.156 1060714.278 42856.874 26954.1567 100821.2316 72053.7806 166491.7206 61281.6393 204159.4654 98231.1587 925381.4698 42417.5485 59573.7345 58509.2794 114012.901 114012.901 48053.1853 85364.5016 52155.3177 29826.9757 148544.6998 77393.2975 83538.9226 40282.6401 157829.2017 65760.382 111007.2521 84440.3437 99585.9851 22815.6012 59754.6174 92649.0842 62729.1199 59445.364 261354650 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 16648.8204 7199.4382 26608.171 107545.9114 38901.7165 9947.9237 24199.4185 5616.495 22084.6977 28125.5913 21940.0053 1757721.7151 55961.7056 48701.0332 75521.4095 41698.0279 41698.0279 33036.1442 41931.8623 42559.0027 8291.4907 12747.8256 18677.8983 11102.0444 35747.6205 69394.5028 18280.0923 109081.7108 76907.8864 100777.6175 25578.6374 28953.4168 29432.6942 17569.488 25225.0773 170776765 tehb Metal Homeostasis Tellurium Detoxification Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 17409.1716 7796.6598 4982.2797 9991.6343 23769.8303 3721.9528 14510.6684 11336.2644 6742.3307 8935.458 4920.0343 104234.6982 5962.0013 11478.8299 6457.2855 9273.4525 9273.4525 10636.0459 8566.6644 8481.882 4274.1999 5495.7959 15978.695 3321.1156 5191.8932 20923.0849 10340.8074 16711.0374 13770.8399 14773.2208 3715.5414 5582.0302 6934.6355 10976.4951 219675920 SoxB Sulfur Sulfur Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 12358.753 236959.4042 7331.1129 9636.5511 6332.1617 14310.667 10264.6845 9596.7296 10246.2748 11520.8035 8846.2938 423097.9416 15239.8588 12197.5367 9487.3891 8263.0976 8263.0976 8201.9586 15951.1884 16494.9871 85081.451 12990.8983 26687.8416 9845.1327 6580.6895 22609.7766 56507.2463 1301732.8533 13932.0945 16875.1706 8761.2113 412437.7898 8793.962 6914.1507 42159.665 164455326 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 23365.1097 19363.282 28723.9463 4691.8418 15150.5785 35696.368 8169.9336 13984.6762 18346.5123 13800.5959 309057.1774 14751.2521 26444.1197 6094.8672 23381.0902 23381.0902 8861.9076 25188.5926 14025.18 14680.8115 24907.658 12931.1008 9868.0568 12214.1761 21944.9813 23481.4051 40930.6496 20342.674 16878.0112 8385.8142 27430.784 22150.4358 14641.5368 24155.8862 171684047 cutinase Carbon Cycling Carbon degradation Cutin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 22349.6781 9986.0613 9187.5396 28866.6751 46774.0614 5841.9316 20795.7549 9642.3723 31341.5894 17414.7856 13870.3289 285763.6081 26209.5502 14913.8124 10545.77805 26419.8616 26419.8616 12703.197 27535.363 15043.23395 35641.8214 60590.1216 10120.5685 22185.1544 19106.0161 79840.7478 97006.5943 25956.0108 15437.1374 64616.1249 13508.8555 89043141 ppx Phosphorus Polyphosphate degradation NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 408321.5995 4265.4805 13561.6799 10729.7464 6584.8096 5853.3548 6740.7927 7059.9622 102166.0358 11868.827 4974.6745 6616.0467 5312.7661 5312.7661 8754.5223 16511.9893 13535.7805 12703.7774 8725.0906 5990.6772 16754.2399 9510.823 21423.3784 3262.8594 24449.24 8294.4997 22766.446 34199.0844 9128.1013 6417.0171 3812.6739 5553.0903 218291273 arsc Metal Homeostasis Arsenic Detoxification Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 43094.399 68957.4686 19784.5995 18799.093 19290.9048 88994.5525 26546.6608 47258.7528 27492.6469 46489.6774 23157.2012 828508.0899 60171.359 52100.3265 60212.3705 30077.5262 30077.5262 28616.4577 53971.946 32330.4862 31191.3871 38471.8157 39385.5789 18244.5932 23554.7741 39591.8335 26170.3477 68280.4178 30769.0966 52502.3299 51041.1117 24575.1838 36558.0449 51204.1811 587512.7741 960298 endochitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 5753.6479 65269.7438 5023.0635 8755.0387 25718.6941 3551.09845 10313.3876 5035.9537 8201.5293 5991.3631 4240.1723 6754.09715 13488.9638 7347.4588 3752.88935 11170.0958 6987.91635 6067.9722 10410.07545 4895.7535 6386.61715 5832.62375 4763.5559 11579.5971 332671648 ara Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 331956.6274 9421.8422 23701.8753 18758.4806 11003.6079 5124.6853 14707.2758 14707.2758 7340.5958 7023.7045 7076.8407 55037.6359 3429.9538 6706.3627 3241.0445 9087.5055 4310.0277 7247.0266 2015.7903 5600.7699 7698.3284 7660.4912 10296.3492 345094558 cysJ Sulfur Reduction NA Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 322230.2971 150315.0689 52107.9089 24674.349 166536.8916 90660.1756 105755.7467 165416.8144 68521.0992 81514.3899 83851.0868 732472.0331 51642.9169 122606.1558 133451.609 124573.3327 124573.3327 51051.701 266942.0079 75761.6597 95476.3431 159814.6145 119800.9699 61931.2725 91467.2555 87948.3916 87790.1672 165044.8032 148982.9931 118308.0465 58081.3827 91592.3178 98754.275 69424.0851 128199.6652 126236393 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 14018.8072 3252911.1608 940381.0537 6227.9097 10054.0706 15607.7991 2629.1543 3977.6579 4161.1646 4182.3086 107549.2485 4684.3556 6309.7774 5795.9476 3693.1794 3693.1794 5831.3888 16041.7855 7174.0069 5993.0976 12778.4305 4978.4615 13163.2015 5034.6999 9669.4917 4393.7574 12242.5352 6273.1233 15516.9102 4660.1698 33166.9538 25045.3762 3684.5735 134147.8537 2826168 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5662.228 6806.1028 11197.4355 2435.1065 6329.158 6206.1482 4458.4556 76862.5452 4784.8667 35832.8996 6754.4945 2452.7274 2452.7274 3377.2743 4772.5547 5385.7591 4987.5734 3168.2263 34037.3586 3034.066 74996.3411 10018.6395 8225.876 2633.9709 3413.2337 2815.6586 96310.6528 386867698 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. animalis ATCC 25527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8305.8528 8990.5655 9508.173 4063.2199 6047.3772 2642.2325 6390.4863 6370.2572 7443.6333 118025.7923 59477.4654 6291.7152 10608.539 12697.6866 12697.6866 5988.6965 19262.005 5771.6457 7943.3056 13329.8848 9755.149 11008.4926 4491.6672 10701.6956 9118.2802 17006.4449 82664.0361 11596.6393 3743.1185 13804.6629 5412.1136 8104.8029 14957.9245 217330333 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4297.0029 10585.5586 3356.2999 4433.181 4062.177 3097.0285 3392.8926 127396.8382 4038.2842 3026.6113 3026.6113 5548.1565 4094.4737 3834.5066 24299.3741 3007.1071 2637.9265 7880.9559 2506.101 3081.1133 5934.4727 2246.5924 68231993 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5871.7619 5752.7338 4870.6385 3276.1924 2585.8408 3952.192 4199.2764 6176.696 3291.1245 56215.0752 5252.9897 3773.0581 3288.0852 3288.0852 4553.9576 7784.7805 6519.4062 31705.7536 5407.0095 7485.1079 2736.9011 3011.235 13887.997 2791.4218 12721.3829 4531.6985 7350.8925 2326.2081 3899.5952 4986.0838 2719.8955 4530.6108 297623877 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 6520.3837 4854.641 2399.6443 2399.6443 6796.1102 4977.2951 4610.5318 163855638 tfdb Organic Remediation Aromatics Chlorinated aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 9828.1774 12199.2336 9334.8609 44036.6401 5265.1154 2917.6576 3924.0807 3837.8285 2474.1836 2474.1836 10649.8772 6396.7206 4886.3688 10522.3721 2920.0482 4184.0415 9852.1259 8729.6342 21778.2217 5565.2441 7728.1138 6803.6885 6108.568 3090.374 5053.5556 381403521 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11086.0903 5752.7421 7111.6254 9209.1636 9187.7329 21056.3338 9961.3638 13177.5823 98171.4309 28109.429 216557.3113 21201.2704 23147.0469 9447.9194 4966.0866 4966.0866 5326.9613 88214.4313 10621.047 8919.9199 8556.8568 5465.3729 5597.7005 11584.6495 18737.0312 26647.3162 18374.2663 14945.4711 9972.4482 30374.1248 10599.396 11250.4787 271351.3363 328913406 Sir Sulfur sulfite reduction NA Bacillus amyloliquefaciens LL3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 19804.6472 9731.6369 215396.12 7080.1235 310392.472 13959.8557 11907.84 8927.9243 202848.0577 11895.6744 10783.5491 13410.5813 12367.497 12367.497 7048.4936 25528.8494 8525.8981 13249.0389 14321.258 36763.7033 6134.9119 7938.7293 11534.9095 8016.0225 27029.4903 10654.4807 17690.9297 6076.5033 11196.6152 51936.5772 6501.4737 9091.9269 120324009 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 6600.9289 8050.1964 5739.3617 3380.683 6509.7999 10536.067 3344.4098 9229.4546 5082.5389 5082.5389 8506.1014 5687.2809 47333.0238 5317.1365 2470.2697 6346.3455 6967.6254 3125.8111 23706.6386 30615.4074 11751.2084 65804.7109 7178.2355 8688.4176 3401.4527 7581.1609 260419720 linc Organic Remediation Pesticides related compound NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 24423.6357 21722.4682 15343.4602 7881.8034 6738.2344 10093.109 11106.7046 3583.3235 20576.0585 12928.9953 9859.9909 390998.3326 21760.4979 15217.1855 4898.3344 9325.4138 9325.4138 8918.5927 17128.1831 12165.8604 9810.346 12268.8437 10539.5112 9553.54 52205.9871 13687.5862 10346.0516 26171.2023 19077.065 15529.7751 9403.8266 14409.4451 27722.9734 6907.8189 55563.3468 326948512 dehh109 Organic Remediation Chlorinated solvents NA Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 15858.7089 9362.5184 24248.306 28116.9008 10950.342 27662.9655 12790.6558 9692.6051 8303.6321 20513.6508 7085.0582 275695.3542 16763.0034 11703.8336 21163.3466 6152.5807 6152.5807 8611.7426 20991.6995 14605.6506 18154.1821 14538.2724 14817.9356 14553.7659 10570.265 17492.0785 11224.969 43335.7474 16609.9887 25453.9677 46632.7708 10731.4957 16091.1979 17146.8434 30878.1368 110825675 pcpe Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 43805.7679 17430.1569 51978.6865 13298.5218 59940.4451 6257.3936 35635.2312 44855.7041 100970.6056 22201.6535 45038.1579 62171.3141 2404455.1257 60468.072 54730.2211 101616.9495 51940.5885 51940.5885 21357.4758 57927.8832 39009.002 85894.1863 104640.4167 35852.1623 24718.8572 142421.3201 44751.7542 56419.9616 147196.9959 108212.5487 52758.5137 41945.6967 26998.3569 30570.9199 18978.8898 371524.835 291441089 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 298651.3367 121692.4098 69371.6719 398915.0494 100598.9306 40497.7729 150223.8471 108304.4216 131482.6891 117743.465 239547.7771 127951.8622 3092856.3947 132990.2664 155168.482 317574.4342 117197.0353 117197.0353 118958.0348 138066.3079 56305.7162 258166.992 271763.8933 108293.5313 107145.3528 150355.0762 95165.2164 80297.5647 350232.2218 144947.2213 200458.4188 48126.066 111073.1543 107427.0142 71535.4523 116422.8545 148834977 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 13114.3477 6052.3424 2160.7101 4121.0646 6065.9963 5924.9495 2645.2229 9649.469 7315.4976 4984.6576 2118.1337 2476.2466 51855540 dmsa Organic Remediation Others NA Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 9125.1127 5577.0508 5255.497 29094.2445 8127.2181 8454.6018 20462.9008 13568.6443 457049.7302 14849.8194 14028.0188 31442.4835 7709.7326 7709.7326 6091.8582 25658.872 25658.7367 7546.6506 14304.7574 10970.7204 10007.2317 19523.6566 41653.5348 27419.8134 30731.9321 21884.6765 30197.3879 12526.3915 14251.9399 12254.94 75738.826 24856.1141 259417432 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 44879.6473 38426.8921 40149.7213 40879.4269 6256.5953 13705.6337 27836.3723 12087.3261 22252.1957 29337.1109 58782.1616 1007195.4542 30671.8785 26519.8555 26122.049 33002.4007 33002.4007 34397.2082 34626.4225 24482.7453 50672.7152 52977.9973 35930.3345 17638.6349 21039.2453 66074.4693 23711.8549 59509.6833 25153.8438 39911.1961 11643.7936 31492.733 33555.2076 13704.8849 62134.659 119376651 arsc Metal Homeostasis Arsenic Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 4402.874 9579.0615 4525.4451 43291.7741 12050.3995 2936.8084 7066.4199 5266.7865 11756.8168 15751.0766 103674.2658 9630.1263 12965.0774 35584.1879 6562.8964 6562.8964 5661.443 20177.7373 6346.4896 5336.1491 2272.185 12310.9106 34293.2995 3338.3868 17175.7439 29426.3764 12401.8024 4355.1249 9492.8572 6230.171 6461.6448 262279885 urec Nitrogen Ammonification NA Acinetobacter calcoaceticus RUH2202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 8533.2259 10284.0165 25994.5291 8669.9665 9517.6472 4807.3517 12537.3674 13072.4471 4337.5508 159108.9642 9160.4105 8998.8115 5862.6997 6273.2047 6273.2047 9221.4954 15576.5427 11197.3445 11610.7997 8441.2434 13625.0034 6407.1244 7440.6898 15993.7101 11669.5289 26643.9598 9452.5682 14744.9599 6393.5045 5428.5664 9340.306 9094.1052 14095.2067 145558155 SoxC Sulfur Sulfur Oxidation NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 5354.5043 8914.2439 3379.7046 4488.3009 5912.9398 141301.9774 6930.8571 3735.5453 3735.5453 4246.9172 19635.5652 7089.8672 22161.997 4539.9323 2593.6901 7659.9542 13974.7407 5367.2896 24445.312 7191.6545 19039.7131 1991.8725 2969.4799 4549.8753 5875.8261 126348134 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 5836.7923 207706.3764 11255.1497 5918.3274 9804.4464 3799.2411 5944.2194 149882.2853 6000.5071 8651.4858 9779.5858 9779.5858 9012.811 3577.1112 13664.1653 21099.0109 12624.0039 4442.036 20481.5539 10305.9886 3348.0745 40730.2159 5643.2881 8430.9723 2579.7515 24141.745 4414.3166 5220.3787 410687260 proO Organic Remediation Aromatics Other aromatics Sphingobium fuliginis ATCC 27551 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium fuliginis; 6706.115 91994.6313 4940.7424 4818.2901 8407.6169 11858.5496 10694.093 124196.9901 36314.3584 10215.7229 99731.3577 6680.331 6680.331 4793.6944 15306.0343 7699.9311 5715.8693 9343.0818 8173.8673 6047.0936 27494.7036 9798.2963 18045.9425 24782.6163 10561.928 17857.6024 9966.8529 8027.4082 9130.2977 29323.4833 56811.3142 113529047 xylj Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 948652.5209 826826.3831 254636.4709 9204.7109 12878.882 10305.9895 13548.5526 12116.1983 5279.7576 9238.8676 26460.5131 20729.3939 215744.7985 145665.2399 42356.4312 14035.3267 11336.281 11336.281 8621.3794 20526.4507 10846.9866 9540.72 32016.4696 22002.0899 24755.4574 9578.2442 72388.9475 62154.0169 41047.3245 34325.5143 38450.977 6329.4894 34953.1371 12704.2732 6435.6314 42277.3298 377528375 ppk Phosphorus Polyphosphate synthesis NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 13654.0916 10299.9552 60714.9141 15483.0845 12385.3327 54188.5225 11289.4213 12369.5271 38150.4704 11734.5822 165571.8814 16689.4922 20827.6135 11069.3863 19643.7591 19643.7591 15025.2926 72467.148 17139.9903 38139.9344 47598.6535 21533.202 37449.2889 18912.3111 18063.7038 27453.0681 34228.2499 21548.6208 39730.1582 10169.8056 39877.8119 10607.9933 14094.1956 16406.5255 298406065 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 17463.6228 7606.3023 3057.4492 6252.244 4648.7419 9078.8724 4296.4196 78049004 cysI Sulfur Other NA Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 30817.8175 4538.2261 12187.9873 7357.7715 4283.3021 6205.3122 15636.493 20410.4176 11615.324 4200.8427 4200.8427 9231.466 5587.5736 13632.615 7429.7653 4094.0525 3345.8352 6758.1508 3011.0988 21555.7405 13228.9563 2957.3346 5876.2156 5306.4575 5341.1508 5502.9275 395548351 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. ICM47 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 6426.3424 10867.3885 47526.2047 7042.7415 6581.7305 7987.7743 56878.2917 29827.3229 4381.0328 3158.354 3158.354 8001.2558 7234.8834 11722.3834 5481.8106 5083.3356 4402.5589 8638.1615 13567.9896 7452.7843 13148.9533 20316.1596 9103.6107 1984.6866 7912.134 4738.4833 8345.534 8107.3594 226184811 nirb Nitrogen Assimilatory N reduction NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8322.7304 10712.3393 12842.6277 16585.9027 6943.7265 2563.2697 3465.8325 5781.3972 3841.1297 58945.7638 11073.4496 4705.2843 9842.4635 9842.4635 3655.249 8414.917 4378.5821 36435.4069 2141.7127 2974.1185 9865.0554 6633.0346 6878.3608 1628.921 3053.2823 3847.7019 2942.8451 8318.8298 112463267 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10359.0413 9129.5872 6641.3365 16648.3218 8328.9537 6119.5758 7557.9702 12115.3231 223351.1993 8752.6307 7140.9794 13795.7953 12527.4234 12527.4234 2785.2145 11652.1021 5725.5182 14080.6783 9290.2087 5374.0014 6846.6677 6540.4885 25724.678 8720.9771 14878.1291 9791.1374 15881.2879 6581.6261 8831.5406 12461.1144 3201.1289 7041.2482 227181187 cutinase Carbon Cycling Carbon degradation Cutin Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 4833.1481 6292.8188 4200.882 4417.1843 4484.0384 65308.3918 8804.3209 4519.5313 5266.1972 2908.9576 4106.9563 6213.6309 2650.7102 3726.9935 5165.8632 7296.2735 83312163 amyA Carbon Cycling Carbon degradation Starch Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 9830.8148 11513.2184 11411.694 4125.7752 5902.9336 12773.9758 6011.2957 75423.5114 32649.9121 126997.3592 10430.1437 13112.7645 43339.5894 8672.7515 8672.7515 6318.4092 59299.843 9410.0385 36859.5377 33299.0905 8194.532 5149.8453 16181.815 13565.7387 13400.5508 32866.3486 9623.245 11988.1291 4274.2763 44226.3529 10440.2962 4367.7868 11147.2541 255319138 ppk Phosphorus Polyphosphate synthesis NA Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 5170.0756 7653.0618 13303.6659 3033.9533 3300.6634 3669.5031 5702.19 2461.6294 66047.416 9592.2149 6071.5703 3341.3364 3341.3364 4207.5809 8495.2654 7470.0855 438009.6834 10156.8809 11437.5741 4185.5917 5393.514 9290.4137 3711.4838 9729.4599 4823.9083 21662.1199 5755.6771 4554.9068 83408.5083 3461.4004 10249.3619 157780232 hsp90_Choanoflagellida Other Phylogenetic NA Savillea micropora superkingdom:Eukaryota;order:Choanoflagellida;family:Acanthoecidae;genus:Savillea; 29479.5015 2273.308 106361.3387 66067.1983 235029.965 3403.3694 4803.3314 4930.2559 2268.552 29531.3864 295695777 Sir Sulfur sulfite reduction NA Bacillus tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 41957.0743 1959523.0092 11853.456 18944.3981 76876.9149 7461.3296 8924.6477 8256.024 16923.3328 16620.791 26223.7588 14532.0048 174858.064 40428.9627 49204.4625 19672.5565 13148.3343 13148.3343 12997.4532 26981.8101 7396.4911 20790.4645 17583.0806 8728.9075 16225.4234 25752.9267 57668.1101 28123.8527 331962.2609 30824.3399 37316.1201 9233.8363 11074.6597 49229.9677 8650.6679 34075.3026 29652570 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11600.8316 5622.0293 7991.5468 9578.3642 8156.3315 5432.3905 4623.6041 7349.3841 12878.013 18279.4127 172004.3848 9417.8307 8438.1934 7807.4701 4523.1142 4523.1142 7902.1683 23307.8628 9924.8763 15371.8996 20619.0341 11078.8644 111078.7418 6506.5618 15389.5316 6163.411 21946.2716 12997.5303 14002.0918 5289.1829 9184.0475 8917.9534 5797.1115 18634.0626 13474199 xyla Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 108600.9551 16896.9994 71270.9227 34089.4483 12602.5327 14960.3235 121146.5783 24535.224 90320.7123 20186.5878 25867.387 29498.4794 660796.4079 34785.0757 65124.6788 44696.9045 26382.6037 26382.6037 27126.2346 78922.1559 61691.5295 316889.5479 70384.2305 76906.7316 41692.4574 21836.8035 263300.5923 20301.1778 414046.0655 44628.087 36245.5884 14519.699 31084.4723 35040.8128 106214.6837 50126.6336 14389227 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 28891.5427 12678.6599 7218.887 7750.2567 8182.7645 22675.5156 24302.8249 11157.0153 153831.4125 4695.9043 7488.0988 14151.2002 12640.3551 12640.3551 12524.4298 8281.4933 5934.4014 257497.0496 23047.6067 6237.111 7670.7677 13119.762 32146.3645 38786.4669 17578.2147 15849.993 11428.5981 6755.1972 13596.0434 9119.4658 6096.4047 295287.4463 54016526 catechol_b Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 33114.4821 16505.5162 8882.3726 13413.0709 9251.9684 34922.1402 9384.2601 11457.0182 13403.4547 36698.9172 253349.6124 17124.8152 18938.54 11996.2878 11731.157 11731.157 7033.9705 22039.5982 12700.8286 204921.956 19401.7683 32875.3188 6097.5174 5694.0454 15232.7255 8510.3875 22409.3718 16097.168 17698.8709 9281.5644 9404.2773 11075.4022 6213.8741 18830.9597 358239839 cutinase Carbon Cycling Carbon degradation Cutin Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 22673.3123 12351.2293 76715.0307 14801.7049 9948.5793 12655.4161 16738.4234 14379.4965 14606.8688 16275.4381 12939.1908 398038.898 21433.9929 24245.4499 10863.9127 9323.8923 9323.8923 9899.4697 24885.2603 16207.0809 17960.9115 16974.9745 14444.9573 8875.6116 8970.4234 21144.0412 12091.3343 36417.4041 14252.7807 30888.5538 9161.6153 14501.3989 13484.0762 12007.2159 20529.7293 26106105 cara Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 49934.1989 5848.8269 8182.1012 2997.7299 6387.4644 20838.6332 7177.2673 10715.5073 102404.3985 5971.0299 6929.2665 15679.1654 5056.7841 5056.7841 12224.5996 13420.2301 7145.6547 4362.842 10116.8231 8086.2671 4395.9026 7418.4317 10230.6131 5232.926 12309.7432 5517.6076 12048.4773 4582.9249 6755.9002 6234.4473 11426.7849 8721.4863 90655410 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 3M9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33388.2538 17256.565 15005.895 27133.8065 16227.2691 18234.3786 11518.6246 109688.3931 25419.2423 31698.815 654283.0233 55397.2173 49727.2261 30532.4239 34246.847 34246.847 16922.6681 19311.3341 15555.7918 58632.9622 44820.0763 39174.1045 11975.7015 15593.5327 24282.786 12729.9336 39705.7544 30883.0878 66600.8202 14869.4084 12886.6912 19138.5964 12927.4391 15567.1303 305414824 terc Metal Homeostasis Tellurium Detoxification Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 228405.8256 9564.8181 30797.3243 2913.7279 3237.4028 2450.2616 24713.5943 17135.4691 6581.0519 61986.5064 4777.5614 6228.6896 2880.1137 2880.1137 26229.8204 28136.0496 65257.5832 189631.6186 13007.5038 7572.5056 8672.2099 4613.2375 8491.3932 5123.3919 16434.5512 5504.0418 15632.6793 4728.6257 4471.2708 15231.0489 8984.8666 7397.9829 85827362 phn Organic Remediation Herbicides related compound NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4689.6993 5915.9027 15118.4474 5350.1746 6306.7884 8686.431 2534.9743 5822.7164 4504.286 2669.4133 156908.1086 6797.591 5385.5872 12585.4238 6189.4644 6189.4644 4521.6651 11435.2879 13459.8556 9685.9964 13379.0465 19643.4325 3602.8729 7006.0109 13610.5489 6442.2709 11104.9763 8298.3902 9611.5889 3401.4742 6837.3024 6328.935 2761.4562 17209.4711 313498012 chrr Metal Homeostasis Chromium Detoxification Pseudomonas putida BIRD-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 32328.2132 607659.9789 20530.6445 10308.4067 8448.1442 23803.566 14930.6514 16204.0311 16757.3245 174157.7286 13381.8573 6779.6434 14982.6257 22838.3046 22838.3046 10374.0873 23643.9746 11044.398 25114.1434 12808.9594 24623.6089 18873.8718 11267.4594 13523.0494 5353.2432 29912.0061 30353.5994 14620.4546 7340.599 10001.2733 10346.5712 19541.6114 22752.8759 367032965 Sir Sulfur sulfite reduction NA Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 3763.0319 10849.4426 2259.2329 2852.2007 2682.6004 76135.1971 4853.0562 5206.3023 5206.3023 3765.2499 8664.2391 5264.0639 6370.7183 4781.6454 2514.4141 3563.6889 2545.5685 3017.4785 2834.8637 2515.3453 83852091 phytase Phosphorus Phytic acid hydrolysis NA Oceanicaulis sp. HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 9586.3964 12546.7719 16330.7187 7768.3757 6571.6317 12249.8437 7860.0034 2922.583 539045.4359 21256.8624 14534.1267 5381.6023 7217.1067 7217.1067 2793.6789 12649.7066 9156.4795 6154.6418 3978.4413 8607.2545 6920.868 46044.0914 16604.553 18545.4306 34011.8834 14861.3417 10508.3953 12681.9104 3832.0427 24225.9613 344039206 pcpb Organic Remediation Herbicides related compound NA Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 5352.8093 1650239.3185 10926.3364 18180.0268 7058.3812 2733.8101 11036.7096 4282.2716 5233.2471 5098.4105 7303.2098 104680.6703 6767.3673 18535.5132 8055.2112 8448.5132 8448.5132 5009.3712 17395.3627 7540.5829 4743.2572 14210.9389 4074.7818 5400.6873 28339.2161 3182.123 13620.024 12517.6299 14945.481 5340.9119 18094.6254 14155.4326 4839.7142 220721490 phn Organic Remediation Herbicides related compound NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4204.3716 103716.6324 48928.9159 4716.7956 5331.6217 2422.514 3419.5835 108759728 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 6516.1598 10293.752 53752.4785 6651.0842 3755.5323 13869.6855 2353.3756 9566.9489 5070.7343 379095.9273 5392.367 27776.1497 14180.9816 8644.9919 8644.9919 5375.1828 18967.5394 9832.6445 9656.4045 13742.2741 7315.1494 8108.1098 18808.7674 9027.8338 26166.6856 19134.7881 13216.3694 24179.8217 4390.5882 15376.1664 3683.4779 7285.6676 333806894 ppx Phosphorus Polyphosphate degradation NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 8723.7324 32475.4572 90515.5231 4476.7273 7462.7591 2845.9127 6472.1699 377555695 PRI Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Bathymodiolus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4640.983 4404.583 3789.5279 4010.2893 6110.3621 344690022 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 22485.6109 9211.5811 13637.57 32765.061 9433.1386 7082.5911 13432.7282 10688.9982 17417.5525 15782.2027 9593.315 151485.4484 15319.1621 17480.3571 28523.9953 11336.6735 11336.6735 10963.9151 45300.4702 15270.0975 22351.6819 28450.1741 21248.1669 18848.4755 15057.5965 18502.6017 7915.4175 43117.6759 26646.7988 24081.8412 21095.8285 19345.3478 22290.5461 9112.7337 19238.3451 338171547 xylj Organic Remediation Aromatics BTEX and related aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 11865.7057 30441.2421 7759.0293 31235.3686 6347.8173 6151.4917 7073.3078 11469.4673 7449.3206 144496.0861 11761.5802 21049.8302 8575.1724 5185.7866 5185.7866 16421.8948 18624.1065 10921.694 10981.3125 18713.6912 14709.1772 6995.8318 8767.2613 25410.096 7736.2957 26466.9621 10759.7665 18149.3977 7372.1718 16814.2857 10255.4747 6736.2193 30340.195 386386790 amyA Carbon Cycling Carbon degradation Starch Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 235727.5872 21868.4362 79132.2188 62324.8861 3981.7215 27844.6668 8599.6609 14616.2217 77558.4689 16323.2663 304617.5441 15221.0625 69486.1212 39063.1645 21860.0254 21860.0254 65725.8852 31254.672 22372.4732 5495.2201 8533.6512 7711.6386 7555.0648 34013.4267 37182.216 7651.0058 70101.1276 41419.4127 43753.4141 13381.7433 31934.2655 35529.8496 9096.0659 16182.9809 37266291 phytase Phosphorus Phytic acid hydrolysis NA Obesumbacterium proteus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Obesumbacterium; 7767.4097 6673.6941 300006.0395 10397.1899 10422.3746 32868.3102 5879.2089 4840.5635 4035.4622 4242.9295 89617.6409 5734.7546 7564.1664 5515.8608 4062.3811 4062.3811 4232.8384 5470.7212 5262.3221 9903.678 16063.0675 2715.8138 4239.4542 12217.3988 3655.1535 45027.196 20105.0372 26031.8061 4670.6687 4986.5496 3814.5294 2951.6187 18669.8778 134078239 protease_serine_fungi Carbon Cycling Carbon degradation protein superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3771.946 2297.0428 3307.4254 3404.7491 4242.6285 3916.9622 2780.9039 84047.8516 4035.0218 3832.2482 3362.6618 10577.9347 4856.6562 9997.4661 7614.6739 7352.9184 3898.9248 3412.5835 6504.6128 3925.5972 11579.94 4049.7123 8875.2247 2952.4859 4543.5295 4284.9174 3273.3182 9803.0562 288316040 cellobiase Carbon Cycling Carbon degradation Cellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 41879.0143 16836.6023 14565.7253 36437.2471 5620.5799 6586.5206 22433.3792 23833.1173 22693.5935 128734.3703 33514.6878 317760.0716 24618.6071 41209.8893 49554.9697 51653.5691 51653.5691 14298.7282 83253.6269 32576.4457 23777.2806 68598.5086 30185.8445 24229.2129 29312.3832 20757.5089 23989.6461 84726.4598 29736.027 39130.7659 19706.041 36100.4816 38167.9205 20842.0368 23506.3264 372474328 cysI Sulfur Other NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 176417.5925 15368.3368 563579.2572 90258.9627 246841.7791 246124.8137 152847.5877 180280.1761 192766.5185 121743.3834 302718.1793 244783.1212 8391814.1141 202245.2243 250912.6426 419186.451 195692.7745 195692.7745 212967.7157 222501.5987 131410.5087 121519.3606 256474.9532 165782.0182 159068.538 191864.97 231094.6799 138317.6165 343386.3287 226568.7354 185491.4108 64290.2177 149986.0936 199188.2137 121040.4256 269049.304 378783643 amyA Carbon Cycling Carbon degradation Starch Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 17288.3056 2706.4198 384159261 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens TA208 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 335319.688 6497.1403 17813.3758 322109.0916 3983.1257 9287.3259 86318.5441 5229.239 8626.468 10681.3403 15298.1508 15298.1508 555616.148 50789.769 4901.3351 86728.3945 7607.9524 13380.033 5183.7658 9304.5198 3332.6757 6206.103 9188.8896 2885.5674 69871.4234 5591.1725 305576.9133 302688121 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 92877.2432 13255.0746 38439.2613 19736.8103 22895.708 5736.4144 44553.9136 10659.6535 89674.6148 7553.6581 59026.5802 150867.2133 11715.8617 11715.8617 14138.819 14363.9218 27428.9712 19201.2414 14345.9719 13396.6507 17100.4146 6382.577 10495.497 66634.0515 20389.5158 12674.2023 13775.5737 10129.0864 10358.0032 7737.6419 53218.6285 9019.1288 239885804 gdh Nitrogen Ammonification NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 4821.5975 6590.6154 4638.282 4330.371 7670.0539 4830.3416 2176.593 10580.2444 1965.7479 119225930 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 21894.7622 43142.2787 9855.6036 7593.4674 13187.423 7355.9755 21355.4933 79637.1222 42549.456 164692.2358 9665.7709 25527.3364 34524.804 22670.9464 22670.9464 14077.4095 36527.7828 16026.622 20046.4661 26868.1933 27977.7348 12175.5918 10344.823 12846.0655 14299.364 73343.1427 22983.5426 26460.692 25287.2893 12938.1127 22209.806 16077.4805 32452.3024 158112437 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 20351.9246 13961.027 7885.2025 20991.9099 14668.1991 7004.7106 3187.8137 10262.2767 13359.1496 246195.9986 6067.0458 3263.7965 54599.3912 6832.3364 22707.7343 3751.6585 6102.1004 21506.6519 12819.5077 34026.4737 11759.6675 7431.7248 8835.6037 27073.6323 9231.8172 11440.4528 2267.2239 21659.2632 11833.2917 13992.8169 20576.1288 327537526 mer Metal Homeostasis Mercury Detoxification Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8743.7504 4870.9349 3136.4462 2022.8349 5489.5938 7170.7673 3315.3859 93117.5773 6401.3137 22820.1999 4097.9073 2465.9566 2465.9566 4020.6834 15747.1421 5121.4421 4817.1185 4575.1122 4466.5429 4820.5609 3044.1921 7204.1941 2131.2442 7582.9947 7447.974 2559.4831 3071.3196 5652.6051 2075.9361 6322.5122 238700160 cysJ Sulfur Reduction NA Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 39250.0829 50123.0347 172172.7516 26848.02 11471.7396 6138.0593 33906.4883 38698.5487 21228.5404 39112.3582 90523.9073 22162.5887 782719.6896 34978.0597 32322.1364 30475.0114 110818.2557 110818.2557 22808.091 51701.4551 28706.9933 26857.2701 55386.4013 64795.4939 17532.2442 25942.7092 32768.1413 32124.8769 66254.2941 21918.6413 50447.2025 14314.3923 26695.4871 24347.4495 24595.861 33296.2977 359306721 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 51877.0069 27842.0155 31155.2254 24623.9596 52334.6916 11627.0337 105920.3041 26075.9031 63076.7993 31394.8634 29306.3255 433766.2036 20310.0553 53328.9994 108394.756 35758.6815 35758.6815 56321.4974 51348.0733 31857.5862 84089.0113 81354.4737 98523.0201 27632.6591 40196.172 32979.5647 25772.7169 165512.1017 72113.8656 47700.7635 25563.7709 40843.6511 55390.4066 24389.4277 40031.6342 377527295 urec Nitrogen Ammonification NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 14495.6045 4159.1559 4894.1926 9408.3476 3320.8392 4278.7222 3037.3764 72974.1556 6639.3126 7449.4642 3027.5878 3027.5878 3404.6288 12591.361 5312.8294 3865.3229 6432.9519 5153.5399 3125.8674 4058.5892 5618.436 3635.8291 12969.9764 12233.4668 9990.9157 4185.0346 4886.1557 5768.2278 5217.2158 33391371 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 79342.4279 117197.3717 13513.204 20877.0157 4391.2467 106159.4535 37700.8766 142702.1642 23573.375 112497.4368 104873.5317 1962931.6389 90456.1149 427420.9612 133304.9018 27895.5953 27895.5953 147573.6675 88733.3504 29408.078 136341.4497 31644.6446 18430.9304 22736.114 32615.5114 499332.2021 39622.6761 67685.699 99883.7602 43308.8817 41719.2447 55053.5083 123509.3315 190007.0166 147330.838 406697992 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Trichosporon asahii var. asahii CBS 8904 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon;species:Trichosporon asahii; 9738.3248 6985.6249 14831.6773 13003.2402 9033.324 25987.456 12289.4413 12704.1132 5775.0641 256479.3715 15274.9093 11942.8381 6185.7932 7883.4829 7883.4829 8168.9573 17556.7237 14118.0592 535631.6296 20058.9739 21174.226 5451.9323 6995.2483 15504.9574 6483.5261 25743.4956 7611.6132 16411.4961 6794.6708 9823.281 9639.124 7738.571 26663.8701 157850317 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 33563.5884 35586.0344 35649.8634 36446.9433 41879.5306 10164.7949 27325.6661 34758.7991 17745.8084 26429.7135 42364.0803 25157.9311 479589.8492 41262.4999 28716.2041 57871.1623 16331.339 16331.339 17709.575 38210.5843 26511.6553 40042.5583 38007.1418 75513.7088 20582.4534 21175.3143 32026.3658 14831.3306 60563.602 22178.1292 40932.8003 140990.2719 18797.2736 19376.4057 31922.8144 81044.7318 145596104 xyla Carbon Cycling Carbon degradation Hemicellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 14123.6353 9459.1771 8056.641 7525.9862 5415.0326 10039.5251 35346.5258 9152.9205 8692.1449 9662.8409 15308.9016 81760.1097 8681.4976 12154.5192 9638.326 9825.7384 9825.7384 6405.8093 24931.2653 11164.3157 5567.0257 41978.8426 46786.7064 6534.3513 6750.9172 14457.0085 40363.9493 26509.7243 19083.9245 11198.6381 6003.0946 19290.4847 13886.1289 8547.1912 20371.8432 325979734 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3800.8227 5314.8963 3351.0872 3463.0203 6200.9111 51988.2563 7003.9964 7003.9964 7525.2521 3399.7073 6872.2969 3737.4364 2861.6703 6815.2162 6726.2936 6153.8123 2701.9111 2746.4545 11659.6664 2723.9922 269838975 cellobiase Carbon Cycling Carbon degradation Cellulose Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7719.8071 1993.3454 4070.3012 63267.4536 6251.103 9716.8934 5846.8091 4731.803 10694.3977 8775.9171 4540.2264 8768.7875 2718.8867 14610.1056 6997.7776 6243.7197 1991.9183 4151.577 6037.216 91790351 mdld Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 42469.1435 20787.9786 15392.1424 20211.0747 262443.8561 6203.2515 20300.5481 19707.6362 26981.4774 74184.2289 41432.9973 38681.6555 760726.2733 243775.3258 134464.3586 43798.5702 34376.1034 34376.1034 59612.1515 140273.9073 34415.4821 46766.8638 50511.9927 74063.2041 54208.7743 42461.894 46330.6722 20716.511 89406.1865 81942.0329 49322.0598 31281.4845 55364.0048 42160.7832 21077.3468 49124.8467 218893996 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 88006.5916 56502.7942 67593.6038 33100.9748 15950.2855 20643.6528 118553.1122 17863.7534 41643.8093 45097.6152 38707.8587 1207815.0572 79328.2402 33019.2001 302987.7479 59117.4608 59117.4608 72127.6674 91036.368 50116.7667 76586.2062 162727.8893 130245.4712 62646.1167 45667.0263 66072.6066 35071.294 102522.4525 71450.9597 100507.3835 31309.8607 64488.9281 38929.5836 127580.6585 52094.8187 255036517 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 19350.968 5143.7989 15108.7156 6367.8551 615414.1411 11722.1464 3126.7675 8252.8802 18127.4247 27294.8669 106644.8773 3659.6911 11282.7619 12218.2007 6074.9262 6074.9262 4851.6225 13852.1398 7715.3267 3843.3043 7988.8151 7687.5619 2847.3196 8526.6261 11622.4643 35542.3113 57381.8832 11357.1416 8152.5827 5100.987 5736.0934 5130.948 6887.1113 25287.3271 148499090 catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 4466.2843 324108994 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 24087.388 11501.7788 14298.6205 33407.8257 10390.2053 3264.7863 10885.6237 3168.6049 8067.3391 87107.6008 7881.2719 320740.8668 19746.0956 45880.1447 21778.026 14752.1227 14752.1227 9424.2343 22471.0086 10401.4694 15196.9373 83555.0882 8578.9332 4700.4246 6233.007 15215.2214 13069.1834 12800.2783 14883.3289 14567.2904 5557.0435 12010.1394 11072.2368 8109.2192 6967.3664 260433260 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 5760.0196 16123.3322 5428.479 2605.3552 5259.6249 2900.3997 4865.8883 7337.015 4062.9479 6100.9801 2095.2837 4186.8645 6596.4495 4257.7962 5275.4136 3983.516 8807.8709 5101.4097 359731524 mer Metal Homeostasis Mercury Detoxification Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 78309.5124 21522.4046 20376.877 15551.5868 10943.3115 25164.6218 11734.0246 38700.4817 14714.3676 13998.9661 23081.2004 13908.5496 370459.2496 13103.5867 25605.7018 22096.9209 13262.4676 13262.4676 11499.9017 30121.4616 21702.364 19438.1684 25839.7552 24079.5994 24406.5996 13161.2108 22867.5754 12412.1616 56953.937 12273.8108 28913.5242 19758.5684 164740.9173 33067.858 10528.8251 29472.4412 398236062 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6540.6681 4797.8109 2610.6629 2597.0719 3975.5409 3928.3891 7137.8075 122636.831 4214.6898 5178.472 1909.0277 1909.0277 2898.8596 8594.1493 5063.7517 6517.0158 4718.1955 3773.8886 3002.9682 3149.4994 5335.7288 2736.927 10147.1471 6322.2229 3993.8791 21575.7003 4926.6438 95218.2824 354556164 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. ATCC 51472 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6215.1923 4172.7678 4006.9406 3458.4378 3781.5102 4575.5428 3657.6453 83212.7527 3850.1357 5628.7712 1927.3144 1927.3144 3349.3344 7927.0974 5712.7044 5470.763 6725.7889 5154.268 3289.8948 2789.1501 7036.313 3147.5689 11084.3546 3724.2473 7282.9903 2813.7884 3866.9583 4353.5435 4007.5202 5647.102 336101360 amyA Carbon Cycling Carbon degradation Starch Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 9236.363 7162.7731 3324.583 3366.679 3656.6609 4133.1974 3203.6905 76038.5973 9644.7666 9096.3269 3093.0902 3093.0902 3002.3762 18761.2853 16707.7217 5556.9858 14773.6866 9194.5101 17334.9081 4132.4952 6757.1858 5389.8494 13437.5002 7338.8258 23059.8298 8114.9491 5210.8509 14614.3136 5604.1531 9820.9967 354825447 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanolinea tarda NOBI-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanolinea;species:Methanolinea tarda; 13800.2242 7610.6277 8510.5425 5488.5842 5278.0267 4280.4854 43892.495 17318.7634 17247.2653 258868.7866 14421.8715 13393.3657 9633.5446 10193.7695 10193.7695 4706.8317 70909.4443 7647.2688 8391.7885 10316.1707 5565.5815 7315.2605 16540.0155 15070.9616 9927.7594 92878.2118 19956.7831 61960.145 4229.0271 16591.5495 18338.2046 9070.0603 28264.1334 340810088 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. 4557 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 93376.9237 85490.36 49948.2444 43304.0248 100880.9565 15007.3115 107515.9832 144200.8903 45033.5832 61932.5635 196294.2324 80170.016 1348709.8037 105560.9457 179854.9023 583533.2308 90118.5736 90118.5736 52966.8315 156821.9812 82172.2485 426972.8477 129450.7088 99943.1529 45366.5351 52190.5045 73554.176 47221.0224 206409.1691 48982.7378 110554.3523 34339.066 144608.525 63685.5831 61355.3955 109590.6573 155964465 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 33410.2095 7731.3741 15798.5855 4896.6332 24484.2797 31566.395 5009.9363 20709.2325 19989.9633 23954.3634 398072.1863 21462.8222 20850.559 12270.9726 336299.9876 336299.9876 14099.9167 24241.0243 34595.3918 23330.6138 18878.901 22236.4284 15791.6273 20089.5493 23713.6497 13706.7682 33422.8108 28707.5184 35082.5468 44238.5269 18593.8418 19277.2778 15532.9267 22043.1383 379045195 cysI Sulfur Other NA Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 13297.02 13667.7689 29073.3704 9228.1521 9228.1521 34738.0991 13184.3167 28063.4827 5833.0871 4312.6777 35422.7352 4936.6564 10315.1207 14822.7464 339513367 napa Nitrogen Dissimilatory N reduction NA Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 7095.9919 37289.1901 3851.4907 2628.8486 5777.1449 4837.9478 13086.7302 4841.2358 5696.7419 2483.3324 2483.3324 8650.0244 6491.3533 23098.7781 5914.9703 2614.1023 3440.3719 8984.2131 2462.4707 21394.2308 6430.5203 10433.0973 3266.4054 4443.2924 7300.9296 7842.6634 13591776 alkb Organic Remediation Other Hydrocarbons NA Nocardioides sp. CF8 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 4391.4791 4865.6746 2355.526 2957.5172 3166.5599 3166.5599 3865.9545 12434.4872 407753295 oxdb Organic Remediation Aromatics Nitoaromatics Serratia plymuthica A30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 19553.2467 12359.6261 5507.7489 24427.4872 37979.1871 9999.8566 14609.7752 8079.4171 16255.8756 20810.0945 33112.8669 624963.2473 25431.107 16322.0131 23026.3627 183859.8349 183859.8349 8050.5534 23115.208 14144.6187 12501.5357 27293.4782 12714.1101 7750.6565 12583.6281 32156.6889 10064.9685 33088.4548 12105.5657 20964.0017 10623.5386 13142.5051 15112.9391 6223.3609 18911.6104 229473029 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 12852.6089 14094.1286 10906.8869 7533.098 12719.7344 132625.4123 35141.5983 8428.5239 15663.775 28617.8729 12959.4248 327145.304 176878.5828 54123.7625 16904.4234 8475.7435 8475.7435 8400.9766 35987.7768 16287.3748 15125.636 136716.6821 16590.698 23528.7184 16414.2407 27661.753 34052.9438 33839.7813 21748.7099 28557.2569 10154.1123 10125.6271 18219.1596 37174.6121 18923.0299 262083615 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 6849.3377 6188.1657 7130.4634 2274.2104 2145.4687 2335.8183 3612.6364 5061.0919 7129.6694 119580.555 5216.9702 5779.0282 5991.9097 7494.3556 7494.3556 2984.8353 6826.1236 5224.7929 4701.6209 6737.3462 3896.5425 2684.17 5250.3385 8964.8376 5254.6166 12708.4656 4642.0194 10236.659 2265.8904 3919.3912 5048.9192 14168.2856 12349.0166 374987461 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 119902.029 23950.8192 12555.8761 34334.1274 40428.6119 48246.5237 39949.9455 12893.1712 28818.1985 39573.8196 37170.7088 442918.1986 78812.2286 28865.1642 71359.3133 73732.1261 73732.1261 31937.3948 69575.3733 27282.4353 97002.3247 63156.0444 22797.7131 21007.6902 23782.3003 31241.2943 27207.6063 224121.806 29659.9935 38240.2052 14978.3825 24488.7264 40549.7165 20223.8123 60405.0125 302035417 badh Organic Remediation Aromatics Other aromatics Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 11181.588 6674.8862 6536.1688 12662.6863 5253.0739 13255.9519 2685.8724 5149.4577 5949.3425 3669.9076 112158.5474 6321.1831 6159.7192 4383.8882 3542.7901 3542.7901 4873.1862 10613.9722 7669.1361 9241.3832 7510.7007 15676.326 3164.4672 4285.5628 13439.5783 4025.3167 14186.9714 6810.3766 10591.4229 3451.3224 5430.6461 4875.7719 4303.2407 7480.641 290470654 mannanase Carbon Cycling Carbon degradation Hemicellulose Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 4669.8843 3543.8839 94471071 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17723.0996 11569.849 3970.3628 78045.0166 4658.6148 6378.6715 12033.675 2840.198 16063.5561 5975.2303 11282.014 83345.2844 6986.4042 16455.0473 10228.6833 8498.1401 8498.1401 3493.5741 109501.5669 6324.4914 5446.3107 9811.4381 6770.5154 12079.2557 8310.9387 11167.3823 5744.8307 48052.2696 33129.044 12010.4939 6036.1388 7779.1773 22909.0926 3608.8824 6683.937 311219402 phn Organic Remediation Herbicides related compound NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 146188.2974 13296.696 57880.0017 945430.5484 113731.1541 33701.9163 203615.9945 116212.7456 63672.0249 112257.6048 109011.3644 145545.5956 4595708.2847 85130.7229 93750.4455 123382.0802 197112.4885 197112.4885 57376.3528 144221.4211 47909.9289 263598.621 231267.9924 125025.5647 55782.6693 77116.3176 105233.8497 121145.4549 465840.0951 153074.4826 195291.9695 41490.4853 80611.7591 178618.1242 74723.5258 79588.8036 239524282 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 6553.483 7610.4498 3558.2881 8489.0485 3210.3687 7013.8975 5151.7334 3565.4118 109697.7476 7001.324 5793.4326 5174.4709 3451.6731 3451.6731 13388.5618 12362.6033 6474.708 14286.7567 11223.2159 7601.9503 3874.2032 4059.4 8666.4172 3103.5233 12327.3688 3549.1168 8997.3981 2878.1628 5803.6173 5024.6789 4673.7089 8097.6685 378815966 merb Metal Homeostasis Mercury Detoxification Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 12306.8935 16277.1071 19611.6378 2908.2594 17754.1217 15787.3261 21586.7001 30521.4703 14460.7103 241815.1251 12091.5366 7115.6116 29302.2345 16576.2833 16576.2833 12338.5833 42595.0464 16875.8498 9893.077 17067.8896 18119.5629 5279.9837 16756.4274 20987.307 12851.0931 49920.5296 24186.6281 75059.0053 7242.9773 13694.3655 45037.0694 3838.6092 9455.5078 12721990 napa Nitrogen Dissimilatory N reduction NA Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 10626.0704 6904.465 6898.8055 5703.4481 8849.452 6582.5931 19653.2052 17035.7669 6378.0311 309138.8698 23114.3302 8822.9776 8421.1039 24647.0761 24647.0761 8383.7959 28981.7471 13603.5031 94312.2621 34799.4026 15596.7436 6082.2563 13377.2754 18023.6128 15262.4838 40130.2709 11688.7106 17980.5339 6104.4868 13561.1787 12658.0808 81375.5443 19778.2102 112462695 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4783.8161 9266.3254 48799.4242 17558.8083 2700.5128 6806.1769 6767.3608 5974.2336 6375.4402 142135.0651 9167.7645 5659.4747 8910.228 7542.6018 7542.6018 6307.8531 9612.2693 9346.1221 13947.4587 10948.5412 27622.2171 4736.6531 14455.6925 9527.3657 14965.1191 6120.013 5716.3114 28679.5636 2100.7851 10122.7199 2425103 hbh Organic Remediation Aromatics BTEX and related aromatics Azotobacter chroococcum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter; 8694.907 25814.2549 4880.0176 7142.1566 4096.0689 3477.6898 4736.0054 5949.3163 12487.0092 5291.279 114616.5531 6676.7903 6079.4654 6361.4277 2909.9751 2909.9751 4901.22 10482.3327 7070.6096 6584.5251 87772.1448 12086.8772 3898.3066 3756.4955 8739.4887 4827.082 18463.5697 6200.2885 11736.9299 3891.1905 6094.3284 6444.7369 5124.3485 10095.329 391857332 bphd Organic Remediation Aromatics Polycyclic aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 19696.2058 33243.6407 6254.8293 5591.1595 2804.168 9238.4524 2857.7426 110632060 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16704.9498 6682.9922 3993.1995 3856.4609 6448.0476 4530.2616 4705.1443 61861.7236 8433.8146 6428.3377 3956.6895 3956.6895 5623.3479 7074.8435 7564.2656 7564.0766 9041.8482 5482.0593 4166.0226 2862.8333 12378.3793 5775.7496 9104.3127 3463.0713 7778.646 6226.1244 5619.0095 37924870 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6788.5943 379990843 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 515213.8868 317403.2953 122310.6888 56175.5879 383609.2304 31197.4433 177881.1328 145278.562 53009.9544 415719.655 554069.2453 113660.7626 1600157.0124 195874.1602 194730.5216 328605.4627 273319.35 273319.35 90329.4289 108613.3209 99126.2408 150493.7585 318749.5164 175418.5572 409838.5494 120209.3223 119199.7935 94753.6071 524001.8051 344222.1153 161455.9034 45075.6389 111195.7336 112608.5081 55930.2687 198926.0478 88919495 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 131065.9889 6228.319 23384.755 27849.5537 21424.355 4744.8717 46223.9108 4553.4517 7423.2412 10782.4504 22466.7673 685965.5977 15892.4814 34788.2761 29750.3347 21219.8741 21219.8741 5176.9564 42099.4301 6369.7318 15436.3589 25995.4732 7706.3937 9167.8923 9126.9897 26253.8322 36254.5028 44354.9575 113523.5268 20724.7606 7027.2371 11654.3771 26331.9318 7765.9633 16250.1964 161019212 bphc Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 10049.3557 6303.0659 8066.7974 11807.7749 5518.7565 7133.4105 5251.2635 11146.4769 12593.5267 10177.9254 257514.5887 16632.2703 10095.8339 4892.2886 15118.4955 15118.4955 6839.2576 13451.6018 11351.5405 10305.6125 74865.8492 10821.1404 10963.1133 7126.4348 15119.3271 9211.1171 36047.1377 10251.5499 14566.5603 7655.878 10334.9769 9074.8267 6410.6802 18761.1948 380683425 pgk Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 50923.2227 22270.0154 69291.8551 54740.3693 165951.0167 22362.341 61251.9896 40125.3266 36478.9078 53116.4397 65536.8084 39395.0459 2359881.7789 144989.4958 118784.7692 72899.7415 60009.0894 60009.0894 68842.947 120859.8769 57040.399 100564.9604 71822.2898 63268.7058 64138.9535 47028.296 60073.648 56957.3292 141636.4682 72110.1631 84807.4129 35503.8051 86648.5284 53035.705 43014.9344 99450.5754 157285710 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7264.6077 20647.2454 49767.3626 11491.8196 3866.2837 26863.467 2901.6784 6374.1697 9053.2513 75886.6477 211220.6576 11636.2275 10228.286 24831.0069 16933.0886 16933.0886 6023.5978 14243.0735 7050.5946 5405.5624 4927.5677 7726.2991 4495.523 9142.1843 24700.2592 4136.3161 13904.036 17111.5119 20066.4307 6223.8204 16848.1465 8391.312 11525.8759 7166.2548 139478525 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 6645.8508 37949.8803 6981.2463 23165.3465 11793.3948 5882.2816 12168.173 14228.912 5151.5195 6628.2035 10280.7671 374005.2227 12400.6126 18536.3049 65750.2268 27972.4543 27972.4543 6985.7838 13581.3094 9350.6129 5948.582 4412.7027 6703.9609 3649.3399 22861.5598 16465.4144 13324.5509 12529.1873 19041.7536 5728.984 5126.1105 5384.2156 3610.4463 73541640 dehh109 Organic Remediation Chlorinated solvents NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 5468.4829 31878.9538 4207.5593 4628.0184 4504.3142 4012.0859 3862.2646 81159.7117 4673.849 3342.7893 2485.0148 2485.0148 3196.7753 6725.7995 7060.6866 5286.3409 8188.8057 3779.2935 7853.2875 5044.0728 13972.2605 5507.6804 7122.3948 3317.936 4407.7897 4925.697 2418.8476 30392.7529 121705728 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 4899.8561 4786.1662 4710.6444 3710.6212 3259.0654 70814.7793 4534.5344 4695.7767 2571.2785 2571.2785 2663.3531 56033.0353 3692.9965 4706.2326 2579.5509 7108.8567 5144.2008 7983.2136 3730.8987 74693.0278 3792.9829 2663.9495 9887.2787 9500.3998 297561884 ara Carbon Cycling Carbon degradation Hemicellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 80781.9681 54430.909 102587.1608 129869.3904 63312.9156 23207.5999 25196.4568 104599.007 44990.1779 105462.3153 116963.186 94791.8489 1070928.7616 86834.1036 94527.0505 200128.6804 100329.6903 100329.6903 52242.9523 130781.7251 60399.4294 59052.8547 98702.7438 194708.2214 71609.3561 79751.3042 121133.1139 70732.3726 187935.9615 54622.2584 85066.7736 41266.3327 71861.9863 62974.6216 93588.1352 134581.6193 86750693 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 31700.848 65861.3547 3215.0447 8407.0319 17624.4326 9909.2082 16421.8991 12399.2935 85618.2298 10759.613 19206.1506 28092.7015 10005.5689 10005.5689 6738.7451 24304.7689 13854.4929 33015.6775 15320.1227 15995.4625 15334.2299 13224.3607 10063.3396 7630.6315 32642.541 31196.3215 20202.2086 9408.2816 24256.488 14982.419 17016.35 11619.2805 348596730 atza Organic Remediation Herbicides related compound NA Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 5034.403 5840.2841 14019.762 34036.6551 2541.0482 8516.4021 1911.8936 229377658 B_lactamase_A Virulence Antibiotic resistance Degradation Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 5802.9881 6270.8754 11339.9525 2606.7312 6130.0051 3630.5385 5498.6435 5077.6622 150501.822 13024.5331 20341.3758 11796.8714 4456.353 4456.353 9304.2902 6362.7635 5945.6843 3225.885 6896.8187 9854.9113 24078.8203 5323.0499 8537.4869 7984.7297 4565.8772 8941.6366 337268834 exaa(moxf) Organic Remediation Chlorinated solvents NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8818.8952 9275.7993 87728.1441 6933.9116 2087.1546 4255.5056 7372.6964 21535.3957 59315.5797 148224.8917 13163.7944 7465.8443 7465.8443 3940.9572 21449.3172 3450.0227 7619.7935 7004.112 3061.2748 29766.5919 5491.8813 3094.8193 21757.5455 9986.9553 13325.1014 2940.2652 2690.1687 51742.488 2322.6244 12972.696 151302230 aps_apra Sulfur adenylylsulfate reductase NA sulfate-reducing bacterium JHA1 superkingdom:Bacteria; 13124.2536 18716.5763 5178.3564 4520.6516 3596.4075 7567.0549 3123.9516 4452.178 5760.9172 14188.6766 87499.4275 8348.947 4703.2064 9233.7226 9233.7226 5052.5002 11861.8694 7845.9815 6224.8196 15252.3126 5157.1029 3045.6704 4482.6251 10410.7104 5610.2611 19516.231 5786.7896 8976.1352 5674.0182 3680.3601 5305.6741 3153.5253 5628.744 189500418 mer Metal Homeostasis Mercury Detoxification Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 5419.683 13723.5647 3566.5533 3513.8302 6618.1875 2977.6841 2517.2566 2517.2566 7411.8112 4214.4872 4158.1057 7272.4681 2166.6665 17111.6058 9563.7593 4900.1264 8494.436 3161.0053 349687068 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 284433.9434 73585.3876 62181.7768 23007.7094 8591.5301 20731.1833 16604.13 17223.967 16066.9311 34275.4001 22676.9622 474201.4125 37911.2851 35316.8661 77236.7808 29321.065 29321.065 20220.1077 43990.0365 23766.8174 30428.8643 67855.5201 30312.775 24545.276 18840.0607 30987.7525 15366.1316 169477.985 22961.9514 30873.0705 26028.2228 21155.915 36686.7245 40585.0296 58074.0679 84358870 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 57098.745 34204.0568 73462.8229 14002.017 29119.8558 112301.5772 50126.8008 67402.0762 36012.9973 23773.9507 123192.3389 80919.0488 1623501.2801 45256.3555 180540.7065 88000.3115 34151.2007 34151.2007 20465.982 66403.7455 48301.1368 45736.1606 83766.4621 37479.7436 25407.7739 31586.8587 57417.8949 26587.0303 90907.4122 59586.7933 67414.2548 38758.0993 38025.3746 53911.4559 21080.7441 58925.4191 167646375 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10665.2132 11469.895 5496.4164 10581.838 10497.6181 6272.1499 6272.1499 6699.3194 19609.2335 4482.7147 26318.9474 4980.7217 2708.7658 3685.8228 4495.0482 8273.7086 6840.6563 2823.3866 3648.1997 3510.6703 3137.4071 255263516 dehh Organic Remediation Chlorinated solvents NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 4689.487 10178.3584 2906.6336 3215.2479 60554.4168 4779.3292 2100.2034 2100.2034 3454.9312 5157.0915 4705.2538 2645.8565 9073.6311 8762.9769 11479.099 6392.2315 2664.4206 3502.3141 4046.094 5158.3041 88700194 TIM Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8297.1664 3912.0661 9584.5428 2325.3209 3016.0105 4538.1377 3303.6195 136943.982 5713.427 3739.0908 2337.178 2337.178 3689.716 10717.916 4114.2056 6404.6292 5925.9354 3438.5906 4053.4846 7867.9108 6334.7297 18348.478 6420.736 4428.1685 4867.9492 5147.0664 2850.9228 5630.3469 315313144 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 772646.0956 30194.049 219504.7515 202979.9031 143856.4023 44736.4991 357528.9919 701500.3665 121361.8955 120341.605 157883.2226 153809.5943 2889067.5819 300137.4228 947756.1291 275945.6983 262870.9714 262870.9714 498516.8884 250131.508 147745.1372 241101.5532 137516.1629 93488.281 99847.5621 155245.6799 113944.9306 527586.7808 206725.5724 264630.7213 139786.6317 196104.0428 441506.7102 396217.6229 164455210 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5956.1314 17034.9094 4605.402 4546.356 5804.9884 2419.76 4095.3007 165266.3932 84279.1571 6768.2106 6437.4426 2405.386 2405.386 4726.945 13258.0772 6237.2329 4932.9284 6085.4923 6923.43 3695.2607 3834.3381 7529.1086 3756.0361 10870.5176 9742.8602 3840.547 4070.9936 4676.3238 3067.7536 10576.0408 87281209 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21260.864 7353.0216 9366.7148 28371.6737 171893.3114 6212.5654 7565.6597 12142.4492 11141.5178 14079.0004 8415.6417 187573.6243 54447.3122 15980.2571 13981.349 8699.6224 8699.6224 14053.4284 17006.3524 13670.0712 12902.5013 22389.3272 17363.0453 9538.7706 9413.5007 19932.0214 12391.2522 48803.0713 21425.2518 25522.6454 7898.0492 12112.103 25692.8546 9225.1185 18443.9095 325955529 ppx Phosphorus Polyphosphate degradation NA Weeksella virosa DSM 16922 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Weeksella;species:Weeksella virosa; 4251.3646 148511181 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 33689.325 39127.5876 16118.9306 4930.5495 14596.1656 55458.5878 18523.9181 15184.2018 28491.588 25837.6231 31859.5761 28928.6364 328733.2877 18040.324 62808.1008 56243.0251 14333.3755 14333.3755 11030.4928 30370.2799 17867.049 12774.6545 19871.318 18462.7538 8344.9026 14264.8573 16437.961 19178.4686 24364.4438 19972.9285 20861.8194 101209.9325 51463.0293 17210.4206 8349.3933 24555.1486 220919931 SoxC Sulfur Sulfur Oxidation NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 16788.9277 12986.734 8030.0771 195641.2449 12497.0938 6500.4338 16525.8367 16521.5721 18236.1957 16176.2028 214260.5688 12907.8884 12316.303 21777.5904 20154.2235 20154.2235 292022.2526 93471.6565 17251.0413 81435.524 18794.6467 16294.1553 13455.852 11357.1653 19568.0874 5882.906 25322.2479 174551.2199 432066.0655 6812.8518 10558.3814 15369.684 7499.3074 18127.5331 167535450 terc Metal Homeostasis Tellurium Detoxification Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 15848.8612 10514.3873 121384.644 8765.3153 5404.2442 9543.8684 17727.1882 16632.3567 11820.6738 202412.7957 12372.6335 19153.2362 14572.6614 5909.7844 5909.7844 8034.6589 28501.0969 13901.4056 22063.1143 20608.6569 16940.7166 9068.8565 12243.7343 16586.7281 9804.844 30720.3281 24460.631 18570.7487 7472.8261 15147.5405 21399.2509 10081.7623 19289.1659 110632280 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6173.6351 139597.4558 6996.821 3152.3805 11201.978 9168.0251 12767.6735 152790.9315 66454.1166 6436.0868 10503.128 10800.4733 10800.4733 11110.7796 8779.9998 4280.4721 7486.4492 27659.0323 19106.8113 5814.8178 4679.8077 10189.0941 7479.1796 22682.3096 25349.929 14120.7059 3695.7165 10288.5867 5292.0208 5540.9371 7165.2908 142001047 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4864.9251 8466.1054 3983.0452 4705.5217 5942.0262 3902.3416 5385.9504 2539.6517 7594.6128 6642.7625 3640.7459 17617.4716 6012.537 4562.0929 2814.4113 3540.7863 7938.773 3177.4958 12322.7458 5760.5404 9302.4036 4281.1433 4384.0398 3227.7436 2982.2466 54026346 terc Metal Homeostasis Tellurium Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 25083.2353 12207.0566 14360.2291 11462.0661 8043.0172 8971.1154 6953.4172 10218.8757 39159.0337 8822.3734 186995.5624 17308.1701 21084.1738 10907.4849 8450.0009 8450.0009 18414.0224 26238.825 14394.563 22470.1355 23545.3495 22036.7697 21042.8806 10471.0768 20394.6262 6646.8635 49875.3361 19751.6254 25152.5466 9891.6528 11733.3359 12344.22 7853.89 20906.7464 377812571 pchcf Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 17942.7113 15208.3141 13090.79 28085.5628 5798.1181 28351.9399 27142.8124 16845.1276 18211.1443 25935.4057 9838.9915 441102.8284 25253.0078 28649.0964 12844.2394 19774.725 19774.725 15360.6066 33649.7327 24066.5973 23827.0609 83021.1455 26421.54 11532.7141 15202.2818 34674.7917 15858.0849 48701.5115 30954.1056 31292.1636 93261.989 33021.008 16462.2041 13513.487 31995.0401 603078 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 5772.8339 2090.6931 3475.3467 2380.6838 4569.9006 7881.6344 4440.8462 78893.8523 16911.8114 6592.1302 4424.4407 2608.048 2608.048 2837.5471 12108.7658 3990.3518 7348.9181 7565.3817 7520.041 3321.6234 5135.3757 6374.3664 11771.466 13823.9438 6100.5232 5606.9473 6424.3784 3186.7697 10926.5888 22036072 dxna Organic Remediation Aromatics Heterocyclic aromatics Terrabacter sp. YK3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 5550.1119 7487.9245 3136.4951 2560.3429 3934.5223 10612.3978 2832.979 97528.9163 7159.2847 10817.00655 34925.1212 13639.4838 13639.4838 3252.8754 12814.2009 5374.4181 4572.178 9979.7323 4144.6269 2323.3354 4014.0537 6496.5771 6423.1794 10556.91795 5166.4427 8414.8752 2173.48865 4072.272 4111.8826 3067.087 4824.1653 227113871 endoglucanase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 113522.7688 201351.1938 53448.2215 33098.4456 183387.7712 7580.374 67947.8174 65555.8651 65220.6349 45954.9988 139321.9524 42440.206 659420.7902 48770.1215 95323.3167 43707.5288 190140.0865 190140.0865 57573.5405 66816.1011 91782.6853 38868.9281 62848.0814 99729.1623 50614.8751 57381.6588 48921.8331 65264.5632 464663.5228 87101.8121 51544.0475 121604.9037 43366.1044 66957.0959 26500.5178 78269.6798 199594055 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5121.7816 14482.9433 4437.0916 4689.6327 4342.8781 8564.1271 5088.5835 3505.1157 20428.3314 4624.4695 7060.0194 7314.543 8761.8424 5651.0646 2719.241 4689.5327 5718.2535 7530.1067 3752.6348 4535.1682 3690.7164 4732.436 18800.3012 354568847 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 4665.2226 5977.9503 2470.8472 7273.7573 4090.266 2826.5971 6210.203 4620.4452 3815.7935 4228.0582 3824.9537 2117.4163 9154.9086 4896.0103 5523.9599 2506.3402 4279.0389 3408.3106 2116.5605 5483.654 325556134 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 11759.9551 8636.8664 25235.247 13976.5587 2578.2701 8369.1917 8413.2945 329296030 cysJ Sulfur Reduction NA Plautia stali symbiont superkingdom:Bacteria; 4804.8111 4311.1273 3461.6456 2365.5034 3620.4596 4842.2099 2885.0873 66152.9566 6358.003 5264.4155 6394.4545 3902.2112 3902.2112 2837.4804 6388.0029 86225.5286 4078.7984 3497.2955 11097.1164 3843.1448 10536.6071 4392.7704 8374.2979 3602.1489 3671.9818 5534.9694 2657.6837 6473.3363 307585015 ppx Phosphorus Polyphosphate degradation NA Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 75049.3445 35999.785 43810.5489 193633.3562 29076.6281 44273.0897 95066.2871 29048.2141 47788.2513 89359.3951 57618.5807 857245.1071 66572.7628 83128.794 181202.6824 78183.578 78183.578 33279.9084 99161.2864 33538.7365 336146.177 208942.1599 143726.9159 40315.6141 50018.7698 136726.4617 46883.9631 156996.3739 100013.8909 65849.5166 260594.8038 97060.0549 69796.5583 40418.0868 94548.3016 299799165 endoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 17884.3281 9927.75 24741.5099 17735.8373 7240.2329 23324.0613 15172.0619 10553.8021 21931.5941 21824.3313 31026.3911 490143.4724 25037.7679 24284.4907 10736.6339 10377.6555 10377.6555 14434.0307 38330.4401 19799.9801 22855.2054 27415.2612 26031.4154 15326.3767 10404.5126 27326.6756 10264.8098 56202.517 12560.4732 28140.9955 10861.0834 14156.4981 15607.8745 15233.9694 38915.898 340795694 ppx Phosphorus Polyphosphate degradation NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 17513.2978 12949.7532 18673.3092 55531.2156 10283.3477 11747.5071 11046.302 6276.4495 16734.3256 14308.9016 6479.6407 325017.7236 24090.7395 14829.3915 31429.5797 8792.2424 8792.2424 10396.4444 32082.1663 16443.6749 10812.0363 16629.383 24711.0955 7238.127 8324.0416 22413.22 9174.5729 35330.337 19279.5693 26330.7625 10507.4201 11199.0262 13896.7611 10175.4218 21360.4964 197322304 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11811.8677 6424.0853 5226.9498 7628.5959 29429.1924 8513.0458 7009.7861 7710.3643 10754.7302 4291.3435 159911.9778 10074.1604 8405.3934 5738.7715 6856.7083 6856.7083 7784.631 15193.8157 9495.3654 10074.9771 23979.0039 7933.2852 4694.9899 5118.2523 12450.9086 5941.0939 21505.287 14635.0094 16724.7212 7298.4947 9155.8828 11110.8375 7552.4058 14673.9398 299798007 nira Nitrogen Assimilatory N reduction NA Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 63450.8831 20474.0165 6804.1895 8465.0328 8374.0724 8751.3367 17553.7173 13131.8484 18903.2355 38463.9276 82338.9582 239594.4232 16354.2702 36059.6058 29888.5097 78512.1954 78512.1954 36681.7391 82353.8845 18316.3676 50276.8174 126001.2062 14769.7031 27403.8227 35246.7749 25303.6892 40039.4445 85563.564 43434.3735 43821.197 12622.3883 56154.2553 32727.5642 26316.1074 28686.6067 85704211 dmdA Sulfur DMSP degradation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5663.3407 17946.3755 3230.869 90316.9008 7180.6411 5335.2439 3493.8568 8247.6242 7008.1356 5823.5293 5814.5425 3309.6913 8742.9547 3219.5639 7668.7591 6684.0283 2313.5092 3842.4978 7034.7618 5334.1038 304353608 phn Organic Remediation Herbicides related compound NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 83390.0178 32678.9883 34821.4648 62452.3634 22916.8148 38000.6743 32243.0754 70310.0607 78407.7703 29537.8375 65455.1758 584777.4702 40668.9817 71003.447 48139.5218 42528.3406 42528.3406 47883.7014 65125.51 32869.5937 42571.8571 37754.057 39662.0134 49260.7945 89786.964 43373.2861 87735.2835 282498.1716 58679.3693 80398.3707 58588.1098 45970.5141 48764.1409 25416.6207 48974.3157 377531513 catb Organic Remediation Aromatics BTEX and related aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 5456.4331 55795.4368 35875.9793 7885.6483 3397.2782 4095.0274 739634.5604 3534.2421 9753.7388 12617.1476 54692.7692 6700.35 6601.062 8947.6656 3836.8893 3836.8893 5656.4729 7921.5102 4833.4627 6016.7103 16466.4113 6592.3064 20833.9705 2375.5397 16198.3083 8714.7536 6656.6611 20020.7146 9215.9022 11539.1353 10257.4311 5373.1092 4827.1857 367048837 badh Organic Remediation Aromatics Other aromatics Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 29799.8151 38692.8277 49840.6485 35560.0335 11012.9186 8252.4059 21008.8021 15423.9444 10111.0355 11996.0751 15439.4373 406554.9058 17566.9968 15549.1347 54222.6382 41036.7765 41036.7765 8524.4269 39309.1467 30055.8984 21704.8689 23757.7126 18993.0172 12571.81 11377.0581 19705.7749 11404.6476 63203.9642 37851.0113 19981.1965 7371.1668 15340.0862 13791.4556 8656.0972 10988.4104 145238806 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 66534.56265 15126.4334 10685.6997 24123.0052 28542.58225 665612.01055 56504.39435 39706.72335 36599.208 33254.3332 33254.3332 24272.2581 49879.8843 26614.04465 39389.88155 42549.8994 22919.39945 43493.4745 25767.23045 60384.68845 20707.57365 43611.93445 17649.70495 70835.4705 335335195 rubisco Carbon Cycling Carbon fixation Calvin cycle Verrucomicrobia bacterium 3b superkingdom:Bacteria;phylum:Verrucomicrobia; 14491.8043 17526.8092 2128.0863 2128.0863 3653.3811 4396.3385 2591.4791 2981.291 1983.584 3839.5298 363615488 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 112900.6947 4833.2598 10550.0195 3236.6968 5078.6102 3955.6558 5258.3986 14350.3848 3575.4144 206346.4275 10607.6488 8257.704 17476.6408 4146.3711 4146.3711 10900.6924 38175.7858 8171.3314 11117.1171 18095.6959 7308.6733 4427.8893 7195.4398 9840.9485 65602.7067 15394.5508 8294.186 11214.989 4461.1117 5240.5878 5943.6489 4196.0174 9956.0727 91788718 PRI Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 144828.7701 22642.7556 19562.011 99662.1674 9951.8857 38143.6024 117056.7844 23892.2632 40114.2955 72149.1748 47751.9664 10083306.2124 107029.6452 97493.0726 64546.9483 152803.2612 152803.2612 21979.4405 76338.0983 40207.5221 64631.4175 82410.2007 96693.213 55634.4491 38833.2862 43343.4769 39786.8721 143404.1265 67394.0623 81418.4364 65802.4116 71231.2875 59992.6433 38916.8324 87860.5084 71383850 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7388.1573 5948.3191 3320.59645 3674.8438 6446.0978 7869.6374 6031.8356 101483.5083 6994.24705 6564.6051 5053.9141 7734.77305 7734.77305 4578.56115 10437.78725 5965.83195 16573.71435 6567.69825 8337.74775 5586.4623 4464.50935 6224.79235 12822.61405 12542.45815 9245.17045 4005.58915 5636.2099 10830.5467 2664.9473 6751.1568 325965308 badh Organic Remediation Aromatics Other aromatics Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 24040.5734 8728.4199 16783.3323 12892.8758 5205.7678 15480.0285 10122.1533 9043.4861 8083.4526 221663.3237 22957.292 15228.6904 18640.0324 38568.9097 38568.9097 10369.1818 25483.4694 10975.6528 13024.2631 21233.3963 17659.3985 38254.8001 9368.8229 17962.4874 5258.914 26469.5638 16681.5616 14296.7543 7766.7883 13966.8011 28010.3907 6443.4913 14320.2655 67524751 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 48921.2197 27804.3486 19497.7318 47259.4867 8347.7115 34756.7228 35159.7578 42667.6622 63095.4134 31029.0599 26972.6391 588828.824 34367.0747 89795.298 61895.837 25926.2477 25926.2477 33689.2058 44492.0817 34370.2949 32063.91 157594.4894 53083.5646 27228.591 65064.1035 77552.2207 20759.4804 62280.8633 48576.036 53727.2648 28576.6727 36769.9861 41513.3462 29936.1055 44301.322 83026036 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 30840.1681 26036.0097 32998.1641 4152.6975 2678.9452 9655.2338 10418.895 4940.7351 130971.6871 8557.9449 7636.6243 42248.9841 20132.507 20132.507 7550.9325 14938.6763 5093.4099 9112.3922 9271.7629 16183.5657 5994.2701 5606.3153 8550.9914 18455.0805 5949.9119 8581.3361 2998.0372 3304.3644 11129.6993 14224.6227 337748601 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8749.3649 25649.5918 13533.6269 6755.16 4171.295 7352.3107 9434.5124 7999.615 192375.8334 12103.5012 5643.2779 4344.0887 3834.1791 3834.1791 7393.3814 21002.2406 12282.6041 12017.3338 21585.1952 9487.7821 7702.162 7405.7305 22213.6915 3036.6553 20865.0783 11198.7892 11294.807 7760.5942 8841.0716 7238.8794 6631.7815 14016.4007 296846742 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 100666.0934 10133.6994 4695.3597 12930.5525 2225.3517 3308.387 4051.0185 4475.4263 15100.729 6001.5325 139031.011 8456.7789 46077.8142 9093.6081 6474.4668 6474.4668 5291.4348 19001.6854 6086.6079 9250.206 13381.2333 83310.5996 5189.8314 17860.2214 26992.6703 3541.1394 18506.6407 7501.6093 20209.8502 5584.0003 8928.6729 20385.501 9517.0639 71604.7478 334117156 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 9013.3753 6059.5546 11084.8136 13436.1368 4239.5113 10565.3531 4876.3177 9022.4208 9593.858 11305.5698 146777.6813 10456.1481 22735.5735 4893.7656 6324.576 6324.576 5544.8663 13510.644 8039.5147 4428.225 7531.8916 9475.1375 4401.7474 3708.5751 28518.1849 17218.9496 26182.2243 7539.7302 12700.9218 10776.3832 9521.9868 7023.7504 5473.9227 20625.0924 195975313 cellobiase Carbon Cycling Carbon degradation Cellulose Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 3980.7395 3478.5653 2820.5672 7946.722 5542.3004 5542.3004 3067.7379 9428.0435 3698.0365 6490.0517 3649.3933 3317.8583 28414.652 5584.8451 4958.4619 7150.5458 4416.0584 7594.1779 84778343 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4744.5393 8931.4958 29023.6023 10970.8005 3511.7211 391382.8812 3049.4337 6893.613 3392.9034 115268.7824 4548.1956 6514.5373 5732.7243 5724.3719 5724.3719 3154.8895 16329.1747 7796.4089 7219.3327 4507.5554 5077.9702 19859.8262 2438.889 12585.2333 11277.7985 10753.5955 3539.2385 5768.8976 4730.4782 2593.4459 44575.0133 110286002 urec Nitrogen Ammonification NA Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6821.8529 2010.7849 4214.9571 88466.0689 4465.5045 3908.3264 6050.2847 2033.5716 2033.5716 6596.9637 3880.042 4654.2769 6856.6001 5586.5231 2217.5766 6487.6754 2276.9675 2684.0282 2267.1438 7190.1504 3038 nitrate_reductase Nitrogen N Assimilation NA Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 8116.8752 8724.0849 5665.1478 12174.5207 8462.0789 5413.0787 3434.2684 4643.969 5091.0093 6609.5332 157472.6672 7345.4206 5425.6932 6553.6246 3942.5513 3942.5513 9688.9629 11491.9815 7772.5762 13817.0946 13383.1111 5791.5513 4349.3545 3934.1541 9699.6803 7594.5066 14843.6495 7567.8794 9548.0178 4288.57 5862.9641 8276.2932 5287.4172 8302.1057 145046536 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7792.5259 12003.1934 2892.7104 4466.8682 2156.8408 3395.4333 59649.1966 4453.5998 6209.6593 2114.8923 2114.8923 4853.3868 3444.5222 14899.3056 5607.9508 2888.7856 5473.8409 2256.2455 5918.2108 2113.6151 3530.1872 5093.9327 2019.141 7434.7439 56786630 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 32333.0685 93903.8188 26199.3537 4255.3041 40770.0042 18827.9 11579.8817 81194.8344 34796.4818 138486.2616 29961.313 25388.8568 230395.857 209846.9418 44769.7372 46974.2047 524507.7575 524507.7575 18317.3155 72002.8478 12970.5086 78441.6799 130822.4354 67366.1029 204477.4477 94398.2121 61998.9327 22166.4303 81429.3012 408421.956 89308.5887 153795.0133 39348.4333 42874.734 24189.6935 26426.5755 311312270 linb Organic Remediation Pesticides related compound NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 4483.5861 11952.7185 3508.3417 4417.8917 49330.3227 7532.8441 11603.8834 235802.085 11597.7846 4977.4312 9018.03 16408.7178 16408.7178 10358.064 93283.4685 4315.7038 10299.2614 14762.6382 15422.2679 12061.8703 6512.1532 12583.1281 13145.688 47275.1214 7660.0274 3311.9281 13614.0815 14685.9333 5258.1123 6291.2563 163262585 cysI Sulfur Other NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 22789.6557 17751.1866 10614.3751 186087.0456 17599.8037 8489.2298 15865.7002 43907.0287 22218.1871 26357.3504 25098.8088 322607.1185 22575.3621 35215.6918 40165.9993 23536.985 23536.985 18641.9923 23907.8144 13700.1814 14990.2197 16463.2591 21343.9634 10277.4256 13182.7373 24437.7923 14421.0137 93228.3799 28053.3551 40875.0901 12495.3937 17100.416 21350.3973 21530.1891 20838.9118 365422841 ppk Phosphorus Polyphosphate synthesis NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5269.1181 947142.6697 5633.2698 20495.8535 4328.2037 7325.4397 6317.2017 27800.1644 8658.8826 4441.6888 13318.1684 31524.7734 31524.7734 4942.9288 17604.7494 7456.2924 12638.7679 434553.506 151294.2008 7902.9947 4332.0711 4736.2661 10393.6247 33837.8193 8762.1556 3968.8431 11732.4962 11223.0933 4619.9186 16826.2952 375753018 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 72582.3933 22869.2745 84152.2251 73483.8014 182163.4161 79540.2094 89112.8452 56072.325 112088.7525 44268.1064 69974.9252 68682.6233 1327621.3602 174416.2984 98414.1628 127253.8644 77376.6425 77376.6425 47211.5682 92155.3692 68195.4879 111316.3302 71707.1746 56684.5244 126309.1941 38312.8604 186367.4494 102913.115 101210.8078 56732.6485 50364.3458 63907.9023 124558.9368 192764388 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 112733.9977 10632.9942 34503.2173 364808.1829 64527.0165 22271.5433 51471.7024 47688.4583 56977.7189 57210.7218 73602.2014 67200.497 835342.8807 55122.0798 105452.9247 64875.5703 142016.3922 142016.3922 22631.3348 154606.9514 49647.8202 55465.9681 62128.6282 90038.6924 32198.6471 33532.6503 69659.6292 53865.7764 142331.3834 45810.6177 86123.4186 33960.3314 40861.8839 66404.1131 32804.5192 94875.8963 62912157 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3941.9042 6627.0904 2327.8247 371552171 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 29766.3644 8598.6638 113242.8406 67038.7746 22364.97 15613.8679 14444.4432 20906.1586 13370.0218 49098.9509 11469.5364 354401.908 21598.8639 20335.8813 23195.5717 18748.3606 18748.3606 17299.3298 21802.6062 16747.4859 43499.2862 16495.9328 27280.3394 10660.57 10256.5906 38307.9804 12816.1353 53717.8522 20508.7754 34080.4037 14496.1586 15085.7757 12513.3182 7787.401 20538.1556 334145014 bphd Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 25136.0186 8177.2692 4612.2765 4467.8039 7198.5787 10226.4537 3282.8599 3225.6604 14941.9959 8791.7961 6001.2997 5027.0619 4276.4869 7990.5261 118424307 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8367.7093 11500.9898 6300.7734 19266.9191 4299.6632 6005.7221 9221.467 10156.4205 4411.3086 4411.3086 4719.0068 14851.191 3934.0014 5551.7182 6940.5799 4277.5903 3196.6567 8334.941 6938.3655 5573.6475 15458.4428 4618.8737 6334.7505 5340.8312 5731.2804 10480.8213 3180.8128 5673.1197 3157524 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 455932.7976 159462.154 312369.5081 236495.2275 204057.4902 2081614.1819 288846.273 295956.7802 488894.0452 259619.4575 217397.6452 248978.6961 5050725.6575 450937.4926 499715.517 1373136.5488 284148.1301 284148.1301 451618.6556 460541.2314 240679.4158 717056.5106 456397.6558 354261.1321 157712.0046 187156.5658 286024.9188 166296.6984 524821.2855 377409.0461 424660.4252 250701.9517 220398.7875 299761.5724 193166.8281 429385.7004 119956193 linb Organic Remediation Pesticides related compound NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 73567.6424 788841.7032 110327.7874 82582.6995 46850.8749 123523.0296 45022.7634 28335.0654 155363.5053 200016.4972 167964.1086 4401930.4507 79668.9094 99277.3627 163868.9364 181532.7509 181532.7509 329302.5606 95903.9976 30317.5742 34587.9928 77646.0272 44813.287 61394.7907 97056.5674 52304.0012 64300.4033 252902.8854 83016.539 196008.1734 67881.5485 114559.303 316617.4975 26107.214 81640.9893 85719208 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9078.932 15922.2429 126102.4257 6645.7545 13661.9534 2713.4745 78217.7544 4641.9805 8373.03 6543.0902 45057.6683 124770.3793 10303.9635 7073.9969 18213.3252 6017.5248 6017.5248 6114.2634 16448.2048 6590.8934 4057.661 11649.2218 7670.2325 9179.3715 18338.1889 34209.0176 5322.1108 17574.433 10244.4408 47049.8412 5995.7151 6497.935 14822.7548 3961.5554 8400.4742 193086210 soxY Sulfur Sulfur Oxidation NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 36258.1235 30302.8125 13884.9989 15216.8572 7443.8627 7372.2543 27016.8266 10424.6219 50354.669 17320.1734 46391.5458 178061.9443 18279.9611 43194.3826 30839.5752 24994.7189 24994.7189 35957.9454 41251.4655 38778.2467 39860.9314 35524.5996 10461.037 32426.1569 23075.2054 20723.6108 13635.022 48965.3458 18977.5942 27790.0896 76279.5996 79452.8789 36082.6336 18122.5996 133774.8577 255936697 endochitinase Carbon Cycling Carbon degradation Chitin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 4723.7774 5060.8898 6886.5644 4115.4599 59923.8159 6816.4988 7217.4908 6123.0171 14909.6977 14909.6977 4080.2662 7538.0462 17147.9338 4333.186 6105.3741 10989.53 9707.5396 7543.9691 8051.2497 5681.3574 9933.3512 2084.9858 4890.8025 7492.9795 4257.208 7413.4402 1336632 hcab Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 12122.0105 13962.4368 29882.5086 9282.1991 34347.8475 5038.9669 13394.6785 3422.3979 12134.6088 11177.3421 6447.2755 171514.5457 19003.2535 12943.5112 5885.7742 11223.9378 11223.9378 16318.3537 11221.1685 8259.8052 11119.5323 8519.9699 5606.2656 9092.9368 14611.4942 15273.6164 20478.2114 11247.1865 12588.3208 6527.6397 8951.1414 16525.37485 4906.0876 176433.3925 319977723 narg Nitrogen Denitrification NA Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 59257.6755 7378.8596 8149.3104 17424.6731 10012.8542 7751.8052 5300.1677 3706.5303 9540.2734 12862.9282 6030.158 231167.7412 13872.405 9432.6379 13131.7454 7800.1448 7800.1448 6085.1022 16881.583 11032.6631 10365.3738 10658.5476 10986.8205 5147.3565 7519.0842 13591.392 5717.219 18650.5485 9114.2279 14492.5528 5506.5135 8457.9178 8060.6139 4702.2395 12754.352 113529725 phn Organic Remediation Herbicides related compound NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 35287.5636 661345.4236 20204.4849 14616.2689 19499.1325 81179.2577 14894.3892 18524.4067 13003.6469 30181.1481 19566.4294 329405.274 58809.5635 22857.2018 33252.3089 13570.4469 13570.4469 11047.6701 47474.5162 16502.638 18624.1198 19775.7662 11550.641 9117.4462 14005.8775 23542.1344 11329.7638 36965.6707 26981.5251 27512.9593 6567.1802 12808.3531 19585.1599 16045.3189 19949.2834 83718203 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 11310.83235 5488.03 8479.1147 9645.2657 12940.93545 3825.66645 5998.3693 7074.1195 11576.82545 6220.2473 154807.79955 9755.3891 15049.1889 5916.906 5916.906 3385.9824 28439.65505 5441.36575 21895.4814 32359.40075 10309.3596 5243.41215 5590.8977 9411.90925 8235.87625 22200.85845 9712.14535 9533.78315 5988.06 20569.93035 5032.99725 10800.675 319414067 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 22804.0754 17333.9106 10838.9794 28896.0435 4745.7116 9600.963 20716.9715 12765.311 28436.7839 21316.5101 27412.067 212751.7041 19890.9509 11969.8767 13352.851 28321.4671 28321.4671 9433.2711 40082.5096 11980.5664 15027.6244 50539.3501 24505.2334 16525.7786 20087.5166 20792.5764 21012.4166 39814.9276 29551.0559 17815.5762 16008.5474 24133.0651 30366.7043 16512.8456 24849.8405 288912935 pcpe Organic Remediation Herbicides related compound NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 323285.1458 187501.5835 81430.8536 1809179.0082 45245.7359 46943.4067 337414.3247 96390.0767 173028.2405 218062.2514 191686.0784 2444531.1301 157615.6177 492626.3709 297007.5481 145653.1699 145653.1699 161422.4027 226401.6979 172278.596 93767.1168 219678.943 223166.7385 135691.0331 145622.6813 247806.6525 126036.4712 653642.4916 231093.947 305599.8187 110188.5212 190557.5228 187276.2891 307561.0717 172338.345 383335264 xyla Carbon Cycling Carbon degradation Hemicellulose Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 533931.2167 61365.7177 1326186.5635 427315.8933 125470.1931 46355.3014 128856.953 113684.5749 101804.9566 141375.9996 201667.4328 116963.5814 2184758.4479 205504.5032 275069.1521 234348.8759 140677.1923 140677.1923 188237.04 154891.3182 80205.3398 251035.0073 449556.5926 127587.299 112595.0536 76322.3649 108242.087 99781.7427 672293.2207 159425.7135 144414.6813 161136.9148 163993.2929 127795.7995 67314.876 236369.1447 289209396 dehh109 Organic Remediation Chlorinated solvents NA Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 19009.0337 432165.6003 11051.0227 22597.7933 12339.3964 50409.6195 24957.0214 16174.0944 11408.797 22719.1676 8903.8323 453649.0975 22209.6635 25379.8619 23085.0098 14523.3846 14523.3846 10234.0191 26213.9033 18509.2982 19981.001 17220.8462 23417.1079 10020.2088 9208.4247 22403.2292 32106.7168 52733.364 19555.0041 25858.2918 10732.2941 13443.8714 12462.3333 8907.4932 17380.3 384439687 catechol_b Organic Remediation Aromatics Other aromatics Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 26195.7916 15024.4651 19739.0949 21878.5127 5282.1983 5282.1983 3364.8069 7189.7566 7339.9895 7674.8955 5282.0917 11396.7249 2908.2894 119831.6874 11198.1214 6996.3592 10042.8375 17599.7464 27859.495 332011801 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10126.818 9958.9203 9287.9482 2978.3757 2978.3757 6066.4319 3676.2204 6137.8868 152969044 arylest Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 673952.3877 5235.0004 4833.9615 4644.0315 8065.9586 4432.3103 4484.2136 4357.5874 5854.7047 6352.8837 9468.6089 2914.7463 2914.7463 6907.5591 16653.7242 12347.0873 8948.2797 5488.6668 4366.914 3883.3348 6764.1432 10464.1383 14299.9408 7681.589 6796.8541 6044.1917 5622.622 53400.5385 86158438 terc Metal Homeostasis Tellurium Detoxification Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9157.2654 18160.5567 3725.159 3068.769 9486.586 42429.4312 816316.9408 2750.5043 15224.5932 7112.3051 2984.8516 4304.8948 68489569 phospholipase_B_fungi virulence degradation NA Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 441935.8521 11126.7141 19374.0051 44916.9269 10664.4568 7854.5626 30926.5083 84951.2076 27605.5835 49330.2157 27886.8416 19293.016 996204.362 30429.8007 116549.7593 25082.3375 55948.3147 55948.3147 34347.5363 112729.8429 21756.5467 426240.1564 72133.6157 58880.1567 16684.6762 20455.8964 30652.7243 86453.9312 169177.9915 190484.7979 47204.7724 184158.9697 26755.9183 42237.2383 52839.8398 44681.2541 323528153 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 60466.5296 61957.6495 11487.0563 28398.1563 101964.8468 23108.6351 17062.3414 10618.2701 18191.4822 100458.777 1501747.0296 20614.7375 18956.4741 19872.738 46550.1815 46550.1815 28199.3519 35879.786 38300.8962 11851.4069 35575.7295 30941.9341 15299.4158 20105.113 20253.2074 40575.2712 48456.7286 20089.5819 79317.2782 15409.4471 22113.5723 48134.2134 22457.954 28085.6858 256034295 SoxC Sulfur Sulfur Oxidation NA Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 22649.4961 9668.5977 19609.6385 16640.1673 11328.7974 12490.4714 7104.8382 12204.2183 14075.8017 7341.3756 272027.5935 18338.005 17198.3448 11710.1821 58985.2895 58985.2895 11312.9679 25617.874 14163.4912 16767.7674 29566.9709 23456.8225 7977.7275 6732.9288 19348.4508 6591.4574 28480.0752 13257.414 17839.6233 6957.4442 11372.9073 11521.6716 8308.8203 24773.4846 70989217 amyA Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 4697.103 2348.5955 4530.11795 61142.2203 4157.8215 15760.02815 6515.8775 4410.4197 2345.5533 3783.9397 3335.9997 4395.9249 2507.4072 1244586 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 26491.8511 12980.0235 12592.3315 14731.0569 5095.3015 42769.8101 12448.1725 9779.7084 22083.9 31082.3883 14704.5852 516454.7647 33368.6228 22139.3497 18118.4256 16792.4578 16792.4578 12309.1042 37281.0399 19205.1451 30226.1644 21466.5587 19817.3264 9995.0204 9523.3887 27752.9436 15527.7298 41150.2822 24336.6141 22816.0776 10568.5052 18430.3281 13993.684 13842.1751 23456.891 182415042 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 5991.32 63879.136 14566.1541 4789.1105 6592.8924 4139.8377 87302.1297 3885.2776 3780.7543 1992.215 1992.215 11686.8645 13204.5794 4896.8995 9971.4809 5599.4761 10238.027 3394.1304 2774.7411 7670.395 6339.5631 18284.1502 6610.0547 12837.3808 7057.9843 8946.8078 4097.7683 3508.2529 11897.5111 365158195 amyA Carbon Cycling Carbon degradation Starch Bacillus smithii 7_3_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus smithii; 4668.0279 90911.7674 4926.0455 4741.8741 3750.0772 3750.0772 10062.9181 11420.3124 4667.2817 7404.1829 2487.7692 15204.6628 4666.7842 2132.9733 3164.0547 5388.8477 349699596 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 8862.5743 6349.0196 23794.9808 11111.4782 4544.8254 3163.2308 3270.4361 5796.2882 3236.3193 222041.5868 6473.0464 6793.2502 7263.6376 7907.4162 7907.4162 5778.4483 6256.0181 7036.3569 5453.101 3722.2047 3728.4506 29300.904 3322.088 18967.0018 8156.9857 11083.983 2194.729 5552.9658 7365.5802 4249.5478 348169757 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 4085.3105 4329.6731 3092.7431 3580.3336 6211.2569 1899.5055 6733.7748 384467563 ppx Phosphorus Polyphosphate degradation NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 134450.7175 12543.5778 31674.9897 5423.8251 11595.9566 19418.7048 8957.7703 5448.0896 210046.624 26910.3411 7516.9416 18235.8501 11012.4139 11012.4139 5835.3011 14889.3393 13259.6978 12226.298 9948.6592 4092.4576 10731.9514 19820.5638 3841.0755 23853.8935 13946.6252 12207.0445 5203.7509 5696.2833 9270.5917 9428.2137 388826596 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus opacus M213 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 11166.4887 8375.6028 12097.7303 5599.4901 3796.0932 9693.7289 11548.3717 8966.4828 5837.1047 190549.0827 14432.1679 11004.7753 8972.3435 7654.9552 7654.9552 4504.998 16503.9467 7446.5775 17040.4644 8246.3508 8708.4736 5101.7555 4834.3763 9884.0281 6511.8758 19866.9017 7560.0994 7009.2267 14895.1324 7351.4903 7247.7126 5211.7293 6725.1133 290963163 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8195.8016 6394.6921 22979.6874 7065.5928 7098.4274 7675.2162 20926.0992 12308.3991 17695.3639 113572.7639 10173.6852 10419.1046 13084.7381 7720.0231 7720.0231 6280.6788 37457.694 20102.0758 8058.9358 13852.687 5832.1739 7127.3324 8438.0992 96066.0268 4943.9097 38306.9732 22087.6667 25164.1275 7521.5612 6672.6469 10804.9318 8454.9162 8009.2801 374991338 rgl Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 4831.8431 7998.4392 2016.694 2016.694 4372.5717 2197.2718 5185.2173 3831.9095 1625.5885 4116.8549 328938921 nirb Nitrogen Assimilatory N reduction NA Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6850.1817 3235.7651 3571.5915 3303.9426 5390.1924 4767.1046 2605.481 90276.4863 7841.7014 5925.4183 3147.5449 3147.5449 4396.3924 8723.6195 5807.3978 7566.0355 5055.9348 5087.7708 2436.3746 3028.1164 8081.3403 3855.3311 10715.3014 8686.5614 8490.4761 3249.3348 4103.4914 4862.0405 2681.2969 6386.0087 50120908 endoglucanase Carbon Cycling Carbon degradation Cellulose Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6327.5712 2219.2439 2514.4405 74784.2695 3960.5763 8732.8383 4251.6234 5599.291 6890.7025 16121.0773 3304.6624 323489769 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 9143.9703 5428.1918 8217.3417 11909.895 8052.9789 11929.378 7913.4056 8420.1627 3702.1278 152008.4791 13914.772 7897.15 3337.2902 3337.2902 4446.2282 17324.486 9542.7516 11110.8009 12778.9 11039.2536 8131.3658 4320.4969 21599.9666 4756.5238 29123.049 4856.8705 9988.1713 5447.5748 7356.432 18332.8733 5763.8268 10434.6165 259507917 cmci Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 37087.4215 66536.904 33115.6942 13317.1837 54003.9376 12784.8964 28025.7382 16436.1077 22022.212 54595.8818 50529.4714 61260.2228 701407.0225 50426.069 107944.8517 45433.154 51111.2743 51111.2743 24878.408 58396.5965 28064.7085 70783.2545 52059.2706 29110.7403 33389.0382 22850.4398 47637.6797 32229.7237 74481.1789 32873.0346 53983.7283 13715.027 28462.1484 34337.2336 25365.9983 41444.7885 398997740 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 86391.5644 8019.7138 9573.1872 6291.3717 14011.5917 5198.717 18687.8287 6047.7047 13213.9341 10308.2228 149290.8161 10539.8039 7044.108 30902.6439 10596.3062 10596.3062 5626.0187 16250.1835 9204.611 18158.5412 19993.383 12774.5446 5152.5597 7132.16 7680.7867 4590.8164 33172.6867 12155.5166 14809.7157 4920.6056 6981.2575 9539.1399 8351.5461 6635.6685 315634122 tehb Metal Homeostasis Tellurium Detoxification Aggregatibacter segnis ATCC 33393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter segnis; 4694.7831 5883.563 22107.4071 8371.3695 2874.4934 2785.4959 5660.5777 3400.7461 63864.5145 4567.8678 4399.2457 3071.876 3071.876 9390.7462 6154.602 5211.8999 4636.5477 3739.4638 3763.2067 2709.1396 7591.9211 13298.3708 8833.2148 2628.5602 3951.5724 4221.0623 48584.8181 378763865 PRK Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4254.4911 5409.2267 84354.9182 2840.3698 2840.3698 7319.5963 4216.1998 4005.8197 6104.5086 3884.4825 19615.7265 5198.5678 3693.8372 3168.534 11777.3778 2687.4101 225082033 bphF1 Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 22331.5933 6009.255 12224.0849 6144.6754 3090.1618 7541.1479 7217.0275 21964.6954 6558.6526 156520.7803 9231.5101 17816.7895 4005.7343 4005.7343 4052.4246 15987.6579 8077.8203 12004.7758 8766.5588 15509.6945 12000.4458 8162.6814 198148.9895 6011.5181 40954.0357 13063.3171 12835.0458 4658.8077 23049.9582 12192.6284 6483.855 13667.7052 211588552 pme_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 22351.454 3247.2857 2798.8701 4495.8221 3769.5741 4684.5114 66711.7181 13794.7251 2248.0962 2248.0962 13627.8568 6399.0243 13962.9287 13051.1842 7817.1943 2591.0088 5791.2506 8245.424 7853.9463 11991.9399 6130.7904 6972.4165 3503.7755 8256.6614 93645.6864 3790.8141 4434.954 291543187 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 25516.1319 137244.678 7424.4817 37900.7932 7962.1516 11057.8234 14275.7636 8885.7862 25212.4868 20065.4916 21155.0168 258539.8348 15712.1868 24494.1394 12087.8888 13169.6843 13169.6843 82695.4792 19532.9162 17679.588 45669.2745 15640.2102 45685.8085 17151.7206 39808.6037 43961.0273 53616.6026 47423.2194 41749.1574 29729.0188 9697.6451 18138.4937 27298.4694 13338.8509 15614.5398 219946231 nagg Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 11705.9622 16747.2151 9207.4428 24672.2673 8339.6331 11310.0719 10397.4222 5331.6323 9344.6482 138822.0857 10452.7557 272207.8778 13281.2819 8382.0804 95559.0981 171135.9086 171135.9086 10946.5734 23192.7016 11576.9915 12753.9941 9847.9429 8227.33 5657.5219 7710.8859 16592.5978 6649.7089 27361.6655 13138.5927 23185.9136 10341.9209 10593.2935 11109.2897 25527.0705 14719.9654 223553646 arsc Metal Homeostasis Arsenic Detoxification Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 10582.4974 25208.5183 6426.7593 5347.0681 36260.8498 14805.7307 7925.0941 18812.9438 11109.1447 11569.9838 293109.1083 118830.1832 30277.0927 9930.7 22609.0947 22609.0947 8064.7283 38620.3577 12560.1916 22453.5466 15335.9667 8879.3681 17313.0974 7751.6874 18366.0006 21348.5483 46658.8262 15427.9042 20947.5136 14136.099 16671.4376 26570.0642 11767.5947 15837.0227 121999097 FBPase Carbon Cycling Carbon fixation Calvin cycle Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 10369.3701 135875.6271 13283.8027 19041.2707 3911.3141 3112.5266 4608.0743 25516.5262 12493.274 8787.642 70169.4985 10581.6498 6967.836 8968.5921 4374.7609 4374.7609 11405.0029 17704.7697 7180.9369 11540.7263 13528.2096 11792.8356 5316.6701 8819.1376 24086.2999 4291.1324 24377.3332 10340.1847 12219.7086 9810.2706 9256.4291 13777.6763 9338.9259 10306.1508 171743234 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 5883.3084 52653.2805 12225.8586 7963.2385 22629.3699 10370.2392 3779.757 3993.2269 9391.6033 10060.7534 4732.153 121592.3927 8823.596 8916.0851 7543.5102 9670.5031 9670.5031 9540.0353 14457.8615 11304.0772 9926.3827 6838.6697 10929.8409 4784.8083 6403.5157 11845.8652 3906.8168 30983.8148 12136.0418 22587.4034 6044.8543 6023.8638 7748.6616 4256.9188 9757.4788 336099784 narg Nitrogen Denitrification NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 15571.2281 9514.1896 6973.2931 8503.897 7540.6827 4194.2412 9672.5148 12350.9248 5713.3728 223393.4866 12992.234 10598.7309 11057.4788 7766.5998 7766.5998 11267.9532 20384.2188 12931.2542 11102.518 16122.9769 16852.7778 4601.5991 6715.8106 13016.5399 7015.7966 30766.2355 16150.7203 29947.8814 8930.926 11138.0204 6052.5708 7984.3511 20734.6725 297165556 arsc Metal Homeostasis Arsenic Detoxification Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 10958.2948 7989.5564 9233.2568 3195.906 7070.1015 5744.9507 44625.1298 18171.6343 20337.7437 401045.8933 46013.8765 39567.5996 33031.8328 31507.7033 31507.7033 3563.5387 15730.9285 6450.6595 7611.4021 10620.6036 8207.4606 2638.9303 9335.6251 23710.4619 3365.9508 16380.2005 6056.2108 17734.9295 2110.0327 11285.8426 7579.0753 5909.0797 6927.832 375101659 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 4935.0142 4845.3944 15545.7586 6350.3423 3902.3594 3119.2441 23583.6283 5562.4376 7278.2648 190273.8239 8484.2938 18043.8637 11153.4064 2626.6981 2626.6981 6160.7832 8283.9123 3808.651 11969.9923 6653.6593 2666.7866 4796.2524 6158.9592 4506.5594 10509.423 6304.545 7326.2952 4219.7077 4078.6996 9378.7663 8845.3637 13639.9719 113473767 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 16067.4512 17420.0373 6385.9368 7902.7957 11716.7402 13908.6708 10227.3474 20559.5047 143651.4502 38227.8154 26475.0352 30789.8637 13331.2109 13331.2109 6561.8507 36175.8738 14612.6262 10832.5408 12436.2202 16214.8018 13409.1493 9702.7421 23567.7913 19208.9355 53355.1867 26638.4556 15893.6105 10493.6278 25164.406 11605.1353 9042.8379 21222.1764 46371029 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 186823.8382 21602.6364 88517.1791 69735.0786 70352.3326 19665.3397 53995.3803 180072.0351 64099.2311 57246.749 94415.5342 68407.4692 1614822.1783 129938.2022 61380.1357 126024.6531 111205.2431 111205.2431 71943.5149 148166.4945 66673.5899 106601.0167 109121.7022 119546.8593 61783.2628 54189.8051 103762.0313 83360.9058 252348.4935 92302.7242 152362.0128 53230.2784 102394.2024 88910.35 90839.1124 100949.1654 170124203 amyA Carbon Cycling Carbon degradation Starch Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 17035.7388 14079.3896 10723.2972 11622.3764 7300.8261 5237.8128 6832.9251 12099.8113 10698.2321 5696.7458 214374.8777 16667.2043 15564.2206 10520.915 5864.0668 5864.0668 7805.391 20945.083 12113.9918 128647.3899 18624.2449 22499.3107 7642.5431 6228.643 16159.6893 6559.169 27617.4623 13859.7135 20781.1442 6227.6286 10666.9054 8810.9001 7018.7044 19593.7828 94471361 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12305.5639 622638.2164 31762.1514 63708.0207 12100.9328 13307.9408 12509.1901 7956.6969 13278.8362 28864.7498 1659637.1347 15020.5559 18982.6356 25374.6116 12151.4411 12151.4411 7465.9563 54457.1836 14960.3359 9424.3294 20299.6891 11898.4979 9070.4436 9798.8373 15476.7288 17808.7167 32165.0769 13898.3341 27725.1857 7985.013 20945.3822 9978.9032 10706.6785 11136.4112 189340204 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 9656.6173 66719.2585 39064.782 53746.5198 12232.8414 119117.6284 15707.8989 15736.7169 10938.5683 706418.5871 26530.8076 348672.9376 1776221.7287 34754.0644 34754.0644 21438.375 14641.2018 23739.4662 569198.2799 5326.3039 5286.4747 3870.8378 24964.45 43990.9684 15332.2039 31238.0507 32659.5292 37542.3235 72081.6509 16122.9161 21474.4375 8694.7638 20106.5112 70997033 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 76271.7985 13211.8719 25257.6587 32439.5766 23584.4797 16092.6229 24828.9738 23583.4445 16335.8384 24796.0345 35735.4977 17619.6225 812410.8505 39447.5633 32042.5492 28237.1581 16165.2278 16165.2278 23189.6631 48369.9634 31971.465 424099.1961 42626.8948 56926.4448 19038.675 14836.7754 37451.3519 14067.979 80885.6084 16771.9553 34909.9324 15428.0946 17133.9722 19978.142 17672.2262 61535.5363 66474891 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 26702.7313 12090.164 49560.295 88730.0615 201701.6843 48991.1108 60837.8233 4666.1714 12226.8483 17459.7658 137368.7456 490283.0485 22191.3278 37698.5781 59343.3909 32665.8665 32665.8665 58019.0272 50137.8681 17942.2603 10856.098 16303.0818 32155.2411 9961.864 30234.6819 52030.5627 38822.2423 54581.7841 57276.0107 59627.192 23354.0279 20022.0538 19655.7705 11353.2792 15011.5724 337762394 badh Organic Remediation Aromatics Other aromatics Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 6099.0195 7374.111 8047.8176 4772.1839 3325.928 8506.4539 5404.8845 8191.5047 3702.3984 129288.1482 5949.2388 6089.7166 6723.0551 4603.8548 4603.8548 5877.6167 13163.3936 9244.5248 7423.3696 7263.425 10580.8584 3437.0677 6500.8167 13669.2138 5213.3986 21071.4775 8541.9015 13233.0376 7315.9453 12231.7537 9736.4756 5469.2729 7659.7035 76667345 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 165813.9135 169379.3765 119852.137 164290.444 133043.1823 59675.8001 153980.1388 229336.8942 178590.1208 107833.3769 182880.986 172838.2716 3456058.8886 220131.6237 308155.5673 426603.7994 167086.17 167086.17 122698.0069 287077.6507 290776.4206 309960.1499 198900.9872 411545.8437 122325.6086 91524.4937 179813.1963 159675.2021 485649.6895 137671.6997 197518.5215 103194.6535 118782.9053 197390.3463 93711.9238 163163.3363 269218142 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 3654.2785 4033.6312 9780.6301 3424.983 10284.2152 6123.6602 4165.5404 70338.5958 7104.3736 5674.7738 4037.5908 3463.6216 3463.6216 4678.2763 21453.4657 5937.7909 6141.5918 6202.614 7991.2193 2895.5871 4518.1538 14753.9138 3238.347 12858.8608 5133.6012 9859.8261 4166.4883 3900.5621 10765.6779 2208.2677 8898.5353 77378451 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18729.8919 8547.2454 14539.4611 78934.7016 12359.3457 7950.845 12583.0851 4119.9065 7550.5051 12485.4612 16019.4896 205528.526 15131.4132 16686.8038 17052.8584 13702.2491 13702.2491 8390.5392 30859.6578 26553.2527 6557.5488 43844.4271 19517.4868 7961.9434 23327.0135 30681.0924 10836.2409 35081.8096 22807.5358 33902.9575 81213.9386 11343.1508 12263.8252 7300.2953 12055.7071 256009273 tehb Metal Homeostasis Tellurium Detoxification Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 10274.3969 11483.9421 7810.347 4167.2361 5077.0333 14342.2485 5599.8398 5627.3781 128311.7642 5761.9089 8683.6896 11100.4884 4383.4969 4383.4969 4327.6237 15089.7983 6223.3416 8114.2657 7056.6857 12396.8225 4851.4102 5801.5029 13217.3926 10688.5516 24166.4517 8221.7559 8181.8886 6141.8217 22913.2738 14109.4913 4778.5241 9544.3812 167355672 chitinase Carbon Cycling Carbon degradation Chitin Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 50105.2677 20873.2225 30135.9701 147029.422 38650.3251 21948.5312 26659.9436 181674.5697 12401.2401 28958.6347 36702.5472 18474.7002 727119.9298 41237.6525 40519.8885 37030.5231 15054.5878 15054.5878 30423.4406 70273.5448 27241.3616 45908.0629 33538.8123 46703.0555 13490.9164 14456.6328 34397.2067 16546.5043 48338.3251 36483.4419 31758.6818 20605.5348 18489.9647 18225.0278 18309.5188 42502.7153 347465154 hsp90_Stramenopiles Other Phylogenetic NA Fucus spiralis superkingdom:Eukaryota;phylum:Phaeophyceae;order:Fucales;family:Fucaceae;genus:Fucus; 44467.181 15438.0705 18884.6393 21432.6771 5728.8967 5317.3926 6115.2712 2895.224 7836.0071 19481.7713 10333.0288 106752.6437 12562.6425 14659.0912 781040.5989 8369.2487 8369.2487 5792.7126 18655.2743 9289.8988 7533.5869 12697.7133 24970.7794 4653.8669 11934.4623 18887.4767 6881.9568 22763.946 20971.2338 15967.4945 11615.8819 15834.7846 12964.3181 63649.4179 21489.3926 348669269 mannanase Carbon Cycling Carbon degradation Hemicellulose Phytophthora sojae superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 44097.1168 12794.5535 749893.3617 248678.5091 227367.8164 16869.0577 77538.6621 49919.9987 80424.0649 43915.9653 97101.7651 40076.1022 1522199.5276 76526.7736 46790.3803 115530.7741 39572.9132 39572.9132 34409.6271 56286.8442 37430.4762 283029.9563 44216.3815 88345.6006 41264.4104 28545.4024 48989.706 26711.2209 138882.0848 73563.8818 44966.6717 27843.6197 38417.4976 26142.4613 26226.1291 133726.9128 78183752 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7128.3648 10618.0268 10852.5558 10910.8911 6192.3469 13040.0063 6887.5605 9174.6937 4237.7971 152972.0537 6897.4225 6351.7957 5306.214 3808.1951 3808.1951 5965.9632 9229.2568 8984.9431 13647.6941 9896.5854 10576.1729 4041.3984 10864.1578 17502.325 12225.4698 25113.126 11897.2922 13380.6139 5993.1294 6152.2393 7386.9509 7547.2704 350532577 dsra Sulfur sulfite reduction NA Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 3762 4495.937 7367.8375 5089.7971 4113.9528 4256.4507 3547.9909 2851.8243 106667.1478 5486.6814 4830.8496 2297.7243 2297.7243 3440.3059 15918.975 5535.2011 3426.1594 12181.8222 7085.4624 3253.0577 2762.1221 9457.2357 5525.4628 11133.6053 5196.1652 17096.2007 4430.9951 4321.2225 3979.6357 3984.7009 8624.8614 353675237 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 4801.3972 6563.3726 3348.0241 4383.0339 39043.7392 6742.5943 30209.479 116632.899 11372.2516 6066.207 22907.6859 4526.7867 4526.7867 7677.5848 12707.5458 24100.4836 5609.143 6720.221 5071.3137 3934.3607 12435.6 9430.7762 18467.2781 16016.2194 2795.7806 4624.6636 6688.7382 9846.3968 5387.5356 320590604 rgl Carbon Cycling Carbon degradation Pectin Grosmannia clavigera kw1407 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 13367.1233 16442.8428 4612.2161 13226.6268 5745.7738 6443.8779 12271.8956 9422.0166 264815.4583 6972.1935 11287.7573 10088.3162 4853.9237 4853.9237 5347.6984 7415.7735 4714.8983 5314.2385 10451.8506 9396.6523 6266.8247 7097.1147 24337.5511 4734.0495 24733.3597 12603.0207 9307.8914 7235.2207 5121.8309 9812.1776 5672.5863 15034.5431 209487006 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8889.6813 11038.2078 1494501.8912 37973.5035 5944.378 23050.7508 8363.8121 10470.9741 10268.8914 2433889.0249 10353.9551 6073.9453 6002.1016 8765.233 8765.233 3234.2193 14778.815 10194.4879 17289.6664 12360.4323 5889.2057 9971.3935 17290.529 7689.8238 46098.7265 19534.0149 9705.0415 4431.161 8084.8954 10995.0892 6438.6508 346993239 arsc Metal Homeostasis Arsenic Detoxification Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 14110.1797 14161.3619 2475.1614 2681.8959 3157544 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 43910.3263 6330.6624 4991.5454 9337.5295 12938.2095 14472.9347 9512.4974 17534.6405 7875.8676 202917.1762 17276.7123 12334.2067 7836.6942 28328.2656 28328.2656 12152.2125 22530.286 14457.2908 18916.9765 14003.2159 13913.1544 12563.296 31431.6232 12884.7346 6505.1087 34369.4341 13815.7919 29415.0768 9546.1071 17744.4036 19938.332 5144.1575 13629.9198 394487194 chnb Organic Remediation Other Hydrocarbons NA Turicella otitidis ATCC 51513 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 8476.3757 6792.9947 4641.7143 3867.65 34298.7885 14772.4828 6719.8388 9281.9854 7112.7962 116416.7006 11051.0907 5384.1363 5286.1374 5286.1374 5846.6361 12816.5212 10046.8664 7781.9286 11488.509 11214.3484 4564.5585 3720.702 10144.6647 4886.8388 27324.7087 10303.5125 8305.905 6498.5891 5661.5623 6395.5463 4775.7747 7602.5328 61808016 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 91097.6235 60333.1404 19926.8139 8189.9807 10299.9837 52410.4472 26473.8329 26796.4724 144328.1495 59384.0328 110589.1382 695427.1565 48861.4507 85215.7579 48510.0471 39638.3894 39638.3894 41081.1446 88407.1243 39067.9822 105279.463 68357.3924 54855.9322 55811.39 58227.1303 59248.1641 59232.399 113769.6158 79575.3541 143096.0045 49107.2474 36640.2479 116072.435 27582.4963 84946.6996 295700160 cmci Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 116855.3716 101726.4062 53732.4494 115100.3767 31168.5994 270427.6088 249862.0249 83349.3241 78125.4296 63925.1497 126676.5496 1508520.1312 150573.748 124333.9357 188775.7211 198082.7472 198082.7472 44579.0618 109897.6132 104579.8204 66014.3047 89371.7036 88070.1224 61264.7145 81898.7568 91508.6109 148649.3296 353901.6738 79781.2609 178380.0269 60193.3576 68241.5592 145894.8983 107087.826 135632.3292 109290310 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7661.1414 1998.4201 2589.6006 4022.8105 5037.0149 88269.4511 7304.5118 5623.7131 3111.3436 11284.9917 5795.3361 6334.1928 9034.6747 6993.8509 6938.244 2501.2494 10165.6166 6473.5333 4824.1202 3221.8687 4613.913 2497.1087 4431.2192 257203551 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 27236.8747 6814.4383 8642.933 11301.0126 16304.7791 11137.8924 7847.0323 10124.9621 17339.5932 24924.6624 275843.9999 12249.3247 7691.2842 42760.3451 10593.8803 10593.8803 10871.2499 21481.9561 14870.0991 55916.8961 23472.5778 16898.7587 7995.7929 14449.9069 23978.155 11143.8965 35855.7485 22307.361 23548.0975 15454.2866 28219.6245 13574.9738 10127.9789 26274.6183 384467092 nosz Nitrogen Denitrification NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 85475.3623 11212.2058 54197.5087 189626.0408 46500.8804 14805.6937 36495.4961 46639.1791 138167.0031 49084.1635 165108.2473 72646.0679 1044823.5118 86601.5191 47936.2671 143396.0533 68250.717 68250.717 30489.6257 95230.7814 49527.2321 170846.2751 119517.2959 62308.9751 139778.9262 62214.4937 55358.933 99533.3817 118078.3302 74422.9011 79080.2529 47782.8797 54913.9386 123600.6367 75009.8144 297650.5529 283481786 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 426205.5325 2195415.048 263087.9296 429217.5221 789316.6635 47119.5945 422090.7787 323534.8301 229914.4283 164954.468 240278.3859 196155.3683 3939989.8875 389926.9296 378959.0544 485116.4113 345062.0629 345062.0629 443601.3387 336391.7091 159263.7576 432402.1207 282253.1917 282069.6798 139425.1881 281810.6175 325660.2259 239593.8982 414956.4194 195968.5189 262276.137 112321.9103 138280.0922 366539.31 154936.9333 479722.6311 91681988 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 73999.6959 7915.6051 22220.8112 15255.8917 32751.5677 91055.7854 12465.5153 4933.4388 11873.628 28998.9955 49595.896 289715.611 16894.6963 20105.5008 19001.8681 14115.9296 14115.9296 9563.1398 24456.0184 18065.4927 25429.933 22032.1102 163351.8599 14486.7922 22173.1976 16045.4301 13438.3576 32137.0656 10608.3243 21237.8442 48359.8504 13092.6251 147076.1082 13076.8607 22417.667 121604928 proO Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6969.9667 8642.7442 2797.3728 2554.0327 7676.0842 2396.5963 4961.8072 4736.103 2834.7505 2834.7505 5858.5362 2325.7749 10721.5263 3303.7943 5143.3598 5573.7746 2363.4756 3575.6016 3479.5217 86285356 nirk Nitrogen Denitrification NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 202270.1602 111661.6871 29987.3678 123458.233 21823.17 73963.8544 434473.3249 95483.7061 101332.5289 210365.0899 125178.1967 8531606.7442 67721.5718 729753.2225 185269.6691 158723.0085 158723.0085 97076.4897 203590.1212 159840.8493 136945.619 208539.0895 114196.1237 119956.5231 114147.1051 94908.1737 137713.4596 359521.9395 139185.408 191942.1504 86613.2124 195103.6857 121188.6364 186714.6042 188373.4845 119956954 ophc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10953.2706 18503.1243 13973.815 187860.6526 7672.7394 18704.491 5665.9613 10625.8019 15647.6983 198047.2527 22499.114 59610.097 6332.6407 15515.282 15515.282 8381.7432 20310.2298 13371.1876 8792.8318 69544.8479 12416.2628 9497.3591 14672.1056 12087.3301 13830.7133 36731.4638 9717.9392 19409.2202 7029.4044 10170.5332 12687.4676 23621.1435 38868.8891 157918173 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 36750.6315 21267.4143 32973.9426 19589.6367 5382.382 26466.7338 16639.0342 17322.5913 23738.3837 33831.1869 30460.4407 595844.6334 35193.1999 33740.5118 16621.7416 34639.0598 34639.0598 25332.963 42609.7808 27532.9301 129210.6827 37584.7069 37124.9088 110205.6704 20889.6289 34541.2545 11498.8374 69976.9313 34386.4978 57708.2571 25365.9987 19101.2996 17376.5463 14706.3416 137301.8692 156232243 mct Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 81853.8866 138210.4521 34481.8125 63730.5392 69959.9376 17892.6568 80229.549 19967.1336 48336.69 95247.7112 53854.3 1820086.402 87166.1484 94670.9364 98269.2026 68505.4111 68505.4111 33363.9315 55588.1542 280569.0301 52033.5036 212044.5019 116626.2342 22557.9815 88630.9694 76265.7232 46168.2689 256285.0757 90620.5048 123392.7659 20500.3519 39316.1901 171406.7522 38125.0989 210437.2328 95109588 cysJ Sulfur Reduction NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 28014.5625 22906.8549 21231.4811 13219.5154 14566.0716 48838.9243 43767.8265 30474.4727 34183.1322 33357.7579 30616.0333 511068.9462 33181.2155 29895.1546 41951.3815 14522.438 14522.438 23808.5644 55258.8737 30497.7843 36309.627 44122.8548 51493.6582 22221.4521 22461.6095 41451.0132 69803.6133 98410.0262 61201.5264 64554.4572 34473.8563 38119.919 48146.2898 34212.0108 46531.5031 340028619 ppx Phosphorus Polyphosphate degradation NA Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 6010.1379 9201.443 8493.0428 15850.3967 5167.0029 10659.3228 6494.3491 18690.5696 8849.4741 303626.6694 11533.3721 14365.1913 42453.1751 9921.2939 9921.2939 10496.655 15776.428 6704.6179 48764.322 95315.9674 29743.4256 8209.1994 12090.3865 16533.3103 20917.2372 19493.4286 13144.5731 20624.3446 9493.5637 21009.0489 21547.6259 9441.8861 30353.6759 407321042 pcpe Organic Remediation Herbicides related compound NA Sinorhizobium meliloti Rm41 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 35751.356 22220.3059 3751.3049 9398.2653 8840.9767 6990.3998 5159.5092 136484.5442 7912.988 12276.3078 14371.1824 8782.8432 8782.8432 4543.2284 14153.6644 9329.7563 4603.8391 7776.2755 4459.1539 3037.1153 13201.2151 9518.662 4404.8257 16962.2449 10458.3386 6919.3997 3579.3687 8524.0568 16210.1287 8189.6288 8423.9205 384918250 soxY Sulfur Sulfur Oxidation NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 11516.7748 23038.0529 10107.2837 69935.4407 3709.2241 137917.9464 6154.0746 8328.2667 167387.797 6721.9238 13452.3798 10175.4922 14169.1887 14169.1887 110689.9722 16785.056 10765.1743 13320.951 34075.623 11754.4772 5183.1998 4875.4585 14096.5505 7853.4875 14759.1114 10743.8354 14569.1881 26575.2027 14757.8223 16281.7619 104609.3789 6669.2065 4160592 rubisco Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15396.1644 9760.645 4473.5187 7525.8357 6766.1021 7251.292 9958.6943 7226.4304 8411.3058 9632.0173 9454.2697 160069.482 11027.3034 88982.7369 28833.6111 25905.9833 25905.9833 9574.3682 28922.2293 24682.2354 7354.6518 20137.394 48891.2539 6568.4322 10171.2056 14299.2549 6615.1577 33299.914 35770.7665 22120.4076 9015.7052 13684.737 9308.4402 7332.3098 50494.0072 357408084 vgb Virulence Antibiotic resistance Degradation Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 9899.0856 6185.1117 36929.5805 6517.0716 5287.3604 10296.6038 4374.1125 11534.0699 10328.9512 6265.085 169533.2102 14921.2149 14413.9475 12951.9882 7098.6879 7098.6879 6503.4692 20663.5214 14548.2637 8835.1914 12347.5992 4721.7236 5328.5463 12378.2457 14748.7515 6216.2154 34518.5273 18338.8992 34061.627 5324.5659 8071.8263 10650.1101 5191.0693 8191.3345 218886707 dmsa Organic Remediation Others NA Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 38855.8957 12548.53 18082.7199 101365.859 15206.8314 25411.4306 27530.9516 23996.1491 32354.0564 165865.9137 34304.2126 2674575.5473 29391.0913 24590.5039 28643.6342 27021.2073 27021.2073 33830.0904 44207.2038 38420.7983 86546.2838 42046.2629 30047.6484 40999.4388 26615.5788 57920.8652 22354.1668 74611.544 33953.8199 117364.8552 13476.8682 28265.869 34118.4498 33964.0117 58528.5414 261366892 ppk Phosphorus Polyphosphate synthesis NA Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 8596.4057 4885.5455 125318.0494 5937.617 10162.918 13509.126 25286.1911 6558.6581 14890.1945 26845.6772 230375.0733 5676.9814 10031.9121 29018.8958 13031.77 13031.77 3713.4299 18456.3694 7302.3126 5863.6165 27099.8642 5724.2516 8702.5497 13978.7996 10343.328 5937.5001 69707.4288 5868.5453 17449.4838 43849.2267 20526.6045 36006.9884 23000.5254 10478.7109 1854553 nifh Nitrogen Nitrogen fixation NA Methanothermobacter thermautotrophicus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 5446.3104 5533.5615 5207.63 32279.8482 10042.5011 6073.3594 6843.274 2383.4163 7721.2436 7638.093 4511.723 207839.4661 11840.6907 11284.0403 21916.5468 10657.7052 10657.7052 4296.9314 25174.467 15286.6711 6822.165 7510.4774 9721.1396 4952.9185 7440.0875 19508.3529 4294.6845 21548.3244 13290.3934 22633.5861 4875.4229 5839.3736 14669.1889 4774.7881 27386.9354 395809982 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas stutzeri DSM 10701 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 10741.7336 5408.6167 7206.4652 2716.6904 5189.9868 6121.893 10950.6966 15253.7104 8327.5543 138180.3848 4287.0187 8944.9829 64496.4944 6245.9286 6245.9286 7097.2143 17847.0528 5995.8876 15588.7067 9813.6507 3831.2756 8554.7678 7128.1267 7593.7276 10345.8833 26398.188 11875.7853 10434.938 7487.4944 7925.9174 6310.3399 7425.6579 7295.0713 90590260 xylanase Carbon Cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 21639.2064 7113.4528 7698.2448 12430.1301 5291.0043 8161.1441 7323.111 5307.1326 7916.2007 10715.99 8047.2431 158947.1299 16155.6627 5544.7635 13607.3899 7239.9252 7239.9252 8227.8306 18548.1885 9542.4408 9755.5272 15284.626 9807.6248 6855.5921 8126.4653 11511.374 5808.0582 47141.2204 6431.3124 12649.842 6324.1804 9687.8136 7601.1219 8485.4513 19640.6662 221723349 cysI Sulfur Other NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 18997.4246 11867.2025 5656.4872 2096.3719 343789.3553 3204.5146 76582.6556 14291.597 25366.1116 8339736.947 7244.2585 11671.5565 59274.9808 14522.2526 14522.2526 6174.5011 21617.9632 7410.8647 22377.1563 13360.945 5033.3822 10463.3441 37505.1673 12787.1732 7065.905 29878.0909 10384.9969 22234.4092 6258.6049 8913.4609 12288.8242 18982.4567 22182.9283 50950653 xyla Carbon Cycling Carbon degradation Hemicellulose Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 81558.673 12093.2694 271339.2443 60241.8114 20813.0813 12487.0397 52230.395 34365.5524 34183.0722 30288.7822 42672.2089 55154.0422 854577.7185 39963.6126 43016.0795 78885.4295 43265.7504 43265.7504 24207.5893 192682.5693 45625.8329 47954.0977 158219.7754 44760.2228 26811.1478 33879.18 57367.0036 27410.1591 212566.7573 48598.7369 52735.0529 20078.6079 40310.6657 44042.1638 35285.9978 98911.6214 325061763 vana Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 10631.2709 11542.1958 6253.7396 3545.4318 7548.6982 7338.4642 5538.4311 102996.4266 7913.5718 11616.5975 4857.2103 4857.2103 6544.0659 13349.6005 11987.421 5971.6548 13387.0048 5874.2418 19884.1561 6901.637 9267.2134 5551.9729 22127.1542 29054.2482 12812.1395 6788.5969 16821.1214 6123.9246 4603.843 21168.7154 67525971 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 11326.4345 4826.9381 7385.9807 12110.7406 9654.6209 4120.5061 8658.1373 9543.7398 9396.9748 123082.7449 9173.5307 8268.8551 4464.9324 20912.1364 20912.1364 6924.1675 18131.5311 15655.0309 8402.7115 25144.9583 14612.706 8220.0571 5654.9775 15281.309 6204.5408 22511.2958 5904.8371 11670.7787 5130.2074 6359.2222 25388.203 15497.7011 7748.285 320109221 mer Metal Homeostasis Mercury Detoxification Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 5510.242 23093.563 4738.8718 4306.9899 12086.0188 5473.5062 5794.5715 7012.6523 72723.1916 4339.8608 7822.114 26933.6763 2416.9296 2416.9296 4273.2607 12339.2009 10300.6344 4963.3283 7645.5735 10676.2598 4994.0182 3796.5461 8384.1371 8564.2615 14984.6847 7967.817 9205.8049 4913.8387 6199.0954 6877.8125 5150.1638 10196.6956 326696731 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 5366.9477 11583.9594 15999.4977 2827.6478 5766.5032 3850.9561 6289.4107 3088.6087 105230.9257 7537.8105 6204.2192 8812.4502 6444.3 6444.3 4236.1707 4805.1229 2443.5654 3086.6118 8296.065 2902.686 14596.8088 6010.8837 7824.8526 5305.6645 3680.1092 3686.9909 219128306 mer Metal Homeostasis Mercury Detoxification Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 3979.153 5544.8778 4344.9981 5161.9714 1957.5562 5020.6512 3562.1558 4192.6344 57940.7094 8247.0463 3805.7666 4815.1199 4590.9853 4590.9853 10739.7873 5349.1769 3508.282 9039.7887 2176.4171 2503.7587 8769.0247 3019.8951 8928.7758 5359.3747 8660.7425 2722.7315 4286.289 5404.9499 12561.9594 13655.1399 406718183 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 36259.8755 22993.7895 26677.5775 52876.6964 56063.5179 9094.1441 138933.7605 28510.7755 14658.1643 31637.9566 33880.0267 29540.5169 763665.0882 41181.4113 40672.5107 32753.7388 19784.043 19784.043 23408.703 48165.632 39636.3426 28860.7347 37442.4262 67379.2064 15923.8746 13931.7985 45406.206 14443.6705 78007.6968 37535.1637 55369.8642 23875.1713 22191.6965 23847.9762 33320.4988 61244.3171 340777829 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 7168.3738 11930.7791 10233.2306 6364.2872 4047.0023 2638.8582 3705.5873 6617.7201 2905.6724 139208.2903 6535.6428 6406.2121 3407.3639 3407.3639 14324.6292 10267.5076 7376.725 6134.5079 5740.4065 6207.3326 3378.9926 3816.0995 9717.2936 3509.5854 19795.7505 6156.9885 8549.5257 4723.0325 6081.8216 6600.4345 4551.4724 9025.0791 387936667 gdh Nitrogen Ammonification NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 62880.566 14123.9681 21537.9079 30875.9484 329603.5943 15661.0163 51325.4235 12385.0767 29941.5202 31678.0586 50205.6375 329123.4543 27468.3169 59821.7419 40452.614 24454.0739 24454.0739 18195.9745 54697.2102 29868.0913 143877.5734 50464.3919 23986.3344 24902.3185 27613.0137 41800.3683 65175.6766 98170.8299 44558.3293 36211.2117 22075.9318 42838.8461 25893.9725 26824.6341 72143.9011 24985196 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 39422.3172 16305.2532 19371.2675 12503.3127 5126.2494 21327.0816 45616.9261 15737.16 21952.0804 23590.5497 19267.6347 765574.8567 28557.8962 70320.6394 20296.1007 21141.7555 21141.7555 57263.9208 69168.0974 21171.6239 74044.9069 43319.7375 42895.2429 20879.4361 19211.1627 43577.3583 84202.5296 68867.8064 32194.8619 45175.2207 16302.2552 22285.5202 23890.3506 15257.1597 46975.8396 335038651 nhh Organic Remediation Aromatics Nitoaromatics Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 6263.4176 23496.0082 5567.284 2497.0196 5817.9779 63009.5169 6063.8322 5795.5282 5795.5282 6021.8296 7124.1141 6365.8952 5450.2195 4239.7077 2697.2039 11966.3402 2898.8842 7804.1002 9450.3033 12004.6615 3868.2064 4017.9555 3664.5597 3102.8379 209408523 cellobiase Carbon Cycling Carbon degradation Cellulose uncultured organism 38656.5083 8088.9166 13780.301 6841.2382 3678.546 5712.5351 4471.7894 59954.5549 7424.5289 4872.2543 2554.5318 2554.5318 3329.4354 6867.543 4632.3238 11675.8691 8100.7857 26483.6224 2657.2128 2937.2857 12285.8655 2294.4334 12967.6138 7197.4531 7548.9328 2430.8158 5286.8021 6255.3963 15054.6548 218258834 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 4570.3057 4018.7467 2825.5849 4274.1932 2618.4873 5910.7745 2307.6145 99041.677 4003.4267 8650.366 8250.7184 5907.6157 31556.575 6091.1713 3081.5339 2507.1631 6220.3011 4388.8817 14483.0339 8653.6552 6387.1066 4292.994 3104.4837 4236.3693 4100.4638 7353.6507 61743047 cutinase Carbon Cycling Carbon degradation Cutin Phytophthora infestans superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 60362.1479 62048.8289 28478.8214 80307.0666 36921.8858 27425.683 70469.2336 40128.0989 34410.5173 34768.885 25369.5509 1125006.1426 34518.5537 44319.2353 70292.5899 44563.5498 44563.5498 21013.5791 45910.6957 72543.947 37794.0486 42377.3155 181154.0898 30712.9715 30003.3277 53634.9636 27649.5984 119225.1698 164270.024 49506.9705 105527.6754 32529.6237 43187.9858 40798.6906 47420.801 157285415 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 35566.564 33737.9748 22273.4155 10861.6135 6034.14 52837.017 16128.4639 26854.5783 17782.8395 21849.366 29040.6537 292708.2356 19773.8741 19570.1564 42210.0156 33474.3937 33474.3937 13340.4548 63197.2401 222914.6608 20361.4125 27530.3615 26142.2184 22028.3924 20422.4126 37643.6245 43120.066 90061.311 26302.9497 37682.7257 13900.7821 48150.1718 24532.1862 10695.0036 67577.608 84392811 urec Nitrogen Ammonification NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 65933.9512 6195.1475 9258.0579 10506.5538 35610.7817 12305.5609 5777.4221 6711.5544 6550.5211 3484.3147 100721.5937 8240.6356 8174.2702 6009.4475 3726.3325 3726.3325 5399.7852 22862.7872 7888.4457 9571.7813 7267.3735 4940.2286 3025.5239 2704.055 8019.553 3904.8753 15808.5724 7575.6163 8412.9756 3931.4409 4813.2367 5693.1589 4730.3047 12166.8337 294814741 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 30840.554 21072.4897 16875.5971 19616.9063 10005.4429 62812.7302 8372.5514 8543.5621 8779.5788 66832.8851 13891.7161 150803.3045 14058.654 21932.2067 21934.5056 13340.2068 13340.2068 5190.2804 23643.3911 9065.5732 7360.0621 271019.4799 6050.9266 7316.4307 11745.6509 23285.1803 12047.2403 39988.6803 21199.3778 27095.1716 7939.9348 11380.9332 20552.181 8282.8194 15665.418 269101991 arsc Metal Homeostasis Arsenic Detoxification Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 10683.0431 12079.7971 13917.5705 7743.3995 4803.5091 4090.3653 5332.6177 8894.1472 4787.7302 121065.5776 5022.0734 5253.6724 88737.0381 3665.6745 3665.6745 4358.2509 8490.1323 7168.8606 7502.6325 9051.9483 10907.0516 2994.8875 3536.7713 8832.0454 3966.322 11058.7766 9091.7213 4456.8836 7807.7623 7683.5608 2617.6856 9596.9 253575649 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 16978.6692 8447.1233 15941.5753 4295.5104 4560.0976 76591.5529 7213.9076 10711.5023 5481.9873 115068.8978 6444.3526 27375.0264 12586.0423 7006.0199 7006.0199 8261.5562 24352.7535 12027.7519 576860.4235 70965.5094 135600.5001 40658.1635 4973.89 14689.6532 27169.7725 43563.3331 13409.7561 14208.6027 5376.2707 6800.7765 28266.2634 4246.0165 88605.0768 326695884 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 6450.9082 6475.5592 20368.101 3579.7555 5346.3956 2773.2184 7278.3081 11856.9681 3721.0612 112529.835 5641.2014 7138.7055 10437.2969 4778.8087 4778.8087 3194.9302 8560.2972 5153.0018 31580.4009 14472.8684 2203.3853 3660.914 11096.7725 13775.5625 6919.3467 13299.5701 4502.4942 5187.7894 5174.1349 4311.2687 4615.6164 223886625 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 41104.7585 151526.1212 12428.1541 7221.9656 337269436 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 3640.9856 611927.7373 4889.8348 17972.3083 2656.8542 2084.1685 4398.1676 3722.9009 2543.5562 65726.4889 5180.2284 3566.1691 4782.1192 2141.9754 2141.9754 7868.1087 3798.9495 4230.8185 2866.2802 5145.6779 8312.6707 7003.9049 2327.8415 3186.8912 3030.4102 5270.1613 78697312 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 213538.9489 4759521.2749 1363892.334 89801.1015 246463.9892 31120.0818 70897.4003 389314.4407 68692.3898 179872.7684 137782.8196 229362.1483 2126463.239 221516.3926 205359.1889 159057.2798 176447.0042 176447.0042 484498.5437 253024.6249 99844.6935 225714.3024 705087.5517 160984.78 76871.1214 264482.3138 184557.396 210525.7257 277104.8893 135563.3796 198515.3096 77408.712 121136.6313 123707.7344 86857.0769 1375284.4538 353209431 pgk Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 6490.0837 17248.999 2423.839 4239.5403 15497.1347 44665.8557 4836.0498 3152.3202 3093.3149 6943.2064 133907578 amyA Carbon Cycling Carbon degradation Starch Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 119884.1794 90883.7431 49846.5826 8467.3844 20877.606 14550.2304 28098.9805 22930.2888 48351.1883 13937.9636 23250.2053 54690.2858 310064.2326 21813.7249 57045.842 90104.2821 15755.2778 15755.2778 24760.0664 213409.0316 24352.4246 36451.1632 28952.2058 15057.8303 19263.7935 10034.7915 43401.9506 25628.596 42546.2534 20486.8853 36261.8981 21356.4536 144956.2992 13547.9974 16690.2581 331186.089 163816635 amyA Carbon Cycling Carbon degradation Starch Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 3904.6808 2406.5915 2640.9626 3312.8875 55552.1124 3952.248 3872.923 2981.807 7247.9287 4231.9689 3496.6747 5026.196 4397.4535 4864.3887 5186.6739 1976.3465 8792.225 3866.5225 5401.8788 1798.2062 2473.2547 4015.3712 5413.6391 91226729 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 5076.028 9093.1817 3231.3108 8416.618 5536.6139 17455.7987 7952.8181 217147.6791 5176.9985 8226.6936 5329.167 7607.7652 7607.7652 9168.1797 7923.828 7732.6984 8062.7206 5983.4012 6528.0982 4271.9244 10474.4717 21258.7255 89593.9518 13794.8762 22345.8628 8409.5952 15111.3881 9988.901 9886.8378 83404766 nirs Nitrogen Denitrification NA uncultured organism 6261.9364 9381.7219 7610.7336 2345.8959 12184.0226 9210.5905 4840.7454 7659.2499 15592.2497 173314.3547 5173.3419 5874.2517 5026.2828 6253.4755 6253.4755 6383.6563 25179.2005 4738.1729 9357.1169 13116.6878 7060.181 4098.8001 3993.4162 8150.7397 14508.1778 9460.4045 3981.4109 7605.0039 2811.713 4556.875 8393.2329 3586.0621 307586962 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6382.283 5993.5986 5841.4318 5019.0423 2368.0503 7478.0721 6754.1405 2648.1609 203966.2515 7281.2511 7611.5716 7307.0156 7307.0156 5890.106 16273.7779 9135.51 8535.7041 9330.0749 16432.9534 5417.8211 4239.3304 11111.0997 5312.0102 19068.5753 6331.4943 12565.1029 6093.0826 6032.0989 12854.4745 7141.762 7818.4219 313141026 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 4703.9907 4429.771 26113.5519 8995.5243 3105.4403 2351.9968 4867.7411 7663.2702 4456.4763 67597.2428 4808.5164 6275.6797 4000.6253 3694.495 3694.495 2613.8789 11104.8246 8646.2238 5038.187 4653.0659 3633.0147 4006.6822 15156.1017 3529.5364 16583.8238 9088.6172 8647.6276 8803.1136 6066.0522 5071.6652 3544.8399 4598.8869 151302384 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum sp. DSM 8775 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 40992.5613 18657.5053 14008.9986 13328.2969 22168.9111 49379.871 27853.3278 80097.4296 50226.5036 29226.9126 25447.0186 18822.826 764651.6558 195758.2252 39653.3736 15949.1228 13522.1343 13522.1343 26511.5568 67318.8721 37519.8099 106439.1525 49774.9606 14929.7084 15091.6681 30242.3499 64112.4803 38390.7641 83529.5615 19255.5636 35814.0313 66360.9909 21840.5924 54774.5766 15212.8288 33510.1678 374702215 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 18605.6716 50794.1976 98960.4486 6717.8873 8504.2157 5626.8887 9426.2976 3285.361 3285.361 7071.2329 11760.5313 177832.5083 7804.4265 3078.3392 2834.1919 19646.4057 8193.9551 7961.6209 2363.8831 4795.8482 3365.5754 5460.4913 227069581 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 26026.4032 12540.1006 13678.228 16156.7752 11451.9297 22157.4422 10393.0965 14728.1494 23027.6792 14504.8238 24348.7205 21794.1487 376702.8341 18883.2077 19523.1221 103759.0421 11016.4468 11016.4468 11151.4821 45403.0077 21374.2059 15365.5334 18802.1686 27981.0588 13236.1333 12224.7586 39727.9862 14313.5787 53041.7189 10887.3546 23721.2663 12694.574 71128.5415 19873.2466 11961.615 25134.9514 386328931 chitinase Carbon Cycling Carbon degradation Chitin Serratia sp. AS13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 8468.6089 7521.906 6407.7207 5452.5331 3730.8466 5522.7648 7793.4589 5485.0581 215585.3938 11881.47 21724.7889 9201.0956 4466.4408 4466.4408 5805.357 16644.1089 9154.6423 9374.8037 13461.3635 8521.1016 5497.7734 4170.486 11570.3854 4891.7161 19956.7034 11844.4027 14439.4543 5205.8546 7639.1548 4868.8094 4238.5282 9429.6084 33147562 napa Nitrogen Dissimilatory N reduction NA Haemophilus ducreyi 35000HP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus ducreyi; 5692.2102 4295.3855 5457.7318 5457.7318 7366.2451 3601.5947 3900.6077 18844.7277 375096269 catechol_b Organic Remediation Aromatics Other aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 36296.8399 19394.6935 6471.4998 14933.2259 58876.3262 9033.4414 17674.8274 15403.0809 7049.6638 12004.2678 13088.436 7790.5451 15901614.6489 15853.3425 17958.5651 23180.3396 25316.6155 25316.6155 11747.3925 27075.8868 16244.6913 34771.8451 53734.4842 31893.5842 58689.0994 12486.4008 22528.9715 8571.2584 45221.6863 20301.1195 31083.6235 12901.8723 8653.1179 11641.3019 6713.2022 20435.1327 227077501 cmci Organic Remediation Aromatics Other aromatics Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7943.2589 3018.1945 11268.4393 3789.2669 5895.3629 3891.6588 10947.0841 112631.1303 8309.3546 8111.4098 5008.6712 3333.5508 3333.5508 2927.4466 7425.7687 6105.4417 3730.8987 7181.6684 5417.6776 5691.2942 2608.7062 8505.8253 5866.3369 11597.0107 4041.8892 7391.2071 3294.5816 4202.2557 5221.5969 4836.3162 12676.5683 23014994 arsc Metal Homeostasis Arsenic Detoxification Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 7498.6214 33913.8901 26683.7489 5601.7035 2952.4893 10449.6297 8169.9163 9973.4326 95620.5406 7273.9401 6209.5243 19871.3933 10079.073 10079.073 3470.2699 9764.4719 8203.6635 6101.8364 5428.3477 8074.1169 2629.2981 4905.9985 9600.15 3968.6289 12980.0094 14238.1286 10869.7928 3378.7483 22844.2205 17488.3044 3637.4286 6123.8427 84664950 SoxB Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 3999.6859 2362.0721 67085.9603 4614.8226 7848.2692 3160.1145 7016.8604 2962.3396 6334.5371 6314.1558 5223.3351 3863.2102 3063.974 5914.2599 210071573 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 13273.201 9067.5663 10469.9522 9410.2582 17088.0743 12018.6907 17649.6171 8843.3191 10661.8962 10542.3567 326586.8841 17283.0328 12037.8966 19135.5189 7870.5752 7870.5752 16253.5926 19047.5796 9596.682 87554.3258 9458.4045 10538.2361 14740.5207 16735.1259 17699.0012 22198.7606 65119.8686 23312.4627 25548.1179 10324.4815 8236.0301 11045.8704 17418.7763 16544.2045 307583708 mer Metal Homeostasis Mercury Detoxification Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 203115.7989 54644.1269 200033.0882 498633.0293 683556.4889 63954.0667 133368.5433 293558.9064 116112.1228 145773.6887 383834.0095 182653.5486 3665321.5819 221609.5787 209077.1083 950146.1177 238257.9148 238257.9148 119969.103 325719.9372 105041.1507 146440.7077 569927.0644 256894.3624 88690.6643 185896.8767 200170.5869 281796.7035 320586.5335 180259.4572 180668.6977 100450.439 146550.8913 288425.1096 103688.3378 172347.5167 242390294 amyA Carbon Cycling Carbon degradation Starch Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 4325.9545 4396.249 2384.1707 3996.9866 4243.7018 6200.5366 2471.165 5140.0294 5768.822 2270.2304 2725.205 333397304 ppx Phosphorus Polyphosphate degradation NA Leuconostoc gelidum KCTC 3527 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gelidum; 4912.9685 7651.864 3334.0243 7676.9531 3245.758 9864.1669 6269.6255 6461.2296 179681.8316 7856.0896 8549.2281 7249.7551 8447.7306 8447.7306 5205.0719 12868.0144 9144.1487 10191.6834 7884.3703 9876.7675 2265.822 7863.3772 10492.9966 6879.5931 30547.0692 23769.5302 10634.9248 4588.3323 6517.2926 8259.784 4026.5504 11777.6341 68348432 urec Nitrogen Ammonification NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9086.5285 13614.2285 13794.4458 6634.6147 8318.1811 5740.4269 8123.4526 17675.7874 8581.3444 201181.0512 10610.6762 21916.5539 12891.5479 3858.141 3858.141 7160.7422 15618.9217 11035.2057 13504.5185 11755.7374 1268218.5194 7420.3391 7962.9946 19594.6361 26453.0425 21683.7255 12603.4413 15540.8629 9626.1542 9439.1892 9787.0226 6786.9878 15994.8159 292900806 cysJ Sulfur Reduction NA Erwinia amylovora ATCC 49946 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 48427.2972 28592.0233 73895.4225 16536.8721 12806.0369 90189.0389 46631.6266 41158.8874 22376.0181 37165.9035 28314.4834 673466.5693 32847.2136 60892.7493 34518.1715 34314.5117 34314.5117 38599.9626 49824.2376 391915.6011 71773.249 164951.076 31041.2774 32301.0347 27077.7533 74199.9314 29955.3654 111380.1629 671914.58 55812.5203 23029.1305 30315.0825 26751.8038 61068.7383 80885.6423 74318053 fccab Sulfur Sulfide Oxidation NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 27746.5414 7993.1976 6142.4976 22254.3399 9049.6344 13241.9697 24708.2556 47276.8483 10196.3592 23599.5813 19632.6045 155675.8026 14498.8168 16747.2233 15035.0851 13997.6468 13997.6468 10411.7153 39248.4245 17061.9364 52157.1774 23435.5095 17844.3268 14491.5265 21786.1705 20521.0288 18129.0077 63551.8221 34748.3212 22987.405 11332.1646 40604.0697 41934.3991 13130.428 43450.2137 116061977 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32947.1644 25043.4681 18260.8482 70322.0538 22886.8105 8657.631 24093.4562 6354.5773 14082.8196 42485.315 19836.3715 436784.9954 20993.8519 27867.3392 56691.0253 29604.6731 29604.6731 22300.3576 29889.023 19956.0953 33295.533 17090.7222 11947.3167 17430.3577 17285.1759 53073.0698 17214.6834 57850.9149 55217.3098 91917.6673 10394.605 18050.4663 32740.6997 10369.8498 33806.951 334118086 FBPase Carbon Cycling Carbon fixation Calvin cycle Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 6479.7487 4824.7244 6284.2228 3043.8135 5911.5825 2411.3004 6071.8818 5455.0433 2450.6529 128312.2292 6459.173 11913.8963 7170.8695 2018.4577 2018.4577 6721.068 10631.4862 6965.2084 7254.6298 16079.8287 8033.1796 5241.2516 4161.7614 10133.6422 3815.3214 16294.2382 6095.1238 10493.3793 4719.5357 9314.9869 5954.2704 7581.0701 10378.7207 325530424 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 79376.9535 15305.6714 41479.2036 92028.8956 24226.701 137440.7358 75098.0099 138422.4443 204468.3103 37285.526 224312.2944 68243.0213 1579796.4458 41787.3817 116600.2359 146895.7617 74429.3525 74429.3525 34210.2475 76844.0598 47104.3583 122102.641 316980.6431 130424.8078 36139.358 49286.8591 49167.6095 77321.9542 106167.2247 110467.8362 145776.6734 53074.3581 85258.5754 86011.2078 22181.7794 67051.4156 126731743 amyA Carbon Cycling Carbon degradation Starch Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 15174.5112 12476.9058 10465.3862 17271.2117 7959.4596 10242.2098 7331.6697 9553.3609 25739.6123 9982.1399 284668.9337 17038.0626 9426.8798 11569.2573 8354.3468 8354.3468 6290.0381 22612.202 10896.3124 19939.3793 65138.0099 28481.5771 6895.0597 8465.2707 33752.1376 8601.6208 38182.8007 19427.7079 17168.8527 6695.403 8156.0062 17780.6482 6499.7967 14487.9352 379990259 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 14827.5008 17513.0076 11342.6809 7983.7184 11547.5309 8892.292 11756.9444 13491.4741 11548.1794 414752.332 15175.3274 14942.9077 10307.246 5992.6324 5992.6324 9043.6947 23937.2946 14534.0406 13052.6515 22617.1745 13580.2396 10839.2046 7741.2792 19192.0592 11763.5269 40288.0388 17249.631 20863.6717 9092.1347 12079.671 16889.3258 9375.0952 25774.9064 222437238 pgk Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 22587.5251 61970.0842 104659.5929 14540.3563 15874.2955 22390.4062 8823.666 77695.0486 20828.956 22468.4688 376967.3903 25971.8964 81566.9097 19745.9714 24885.6036 24885.6036 8407.7055 59683.2831 16740.2328 71732.2636 22417.2465 13346.9121 27813.354 16851.3378 25989.1339 33979.292 51578.0493 122240.1303 27878.3404 20131.5617 16500.4901 24315.0093 26071.2516 97319.6654 218130385 amyA Carbon Cycling Carbon degradation Starch Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 1151771.381 34774.1352 333263.786 19228.1315 66055.6929 116688.5697 107593.7326 104159.1896 476558.8473 225221.9734 134465.9323 313645.572 1162944.1394 139311.0445 502760.3253 382419.4333 145235.9336 145235.9336 267734.9544 213594.3506 88777.568 1523325.7372 1148713.99 106936.0426 298722.0254 166519.5893 93132.3426 140123.622 413402.4619 230702.9698 273050.2382 49268.1619 240816.1164 149635.3501 148592.9433 1351621.4505 121707184 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5219.526 21031.0845 7324.1023 10083.6202 3793.5161 19802.7492 25837.3525 145413.7563 6923.9423 16452.2709 17949.487 6836.9101 6836.9101 4672.5378 25688.4392 6688.6001 4191.7467 6862.7103 8708.2945 3680.6591 5144.0492 9735.9941 7972.8321 16423.7271 5287.2867 9327.2077 2634.3096 6845.5639 5790.2041 5568.6053 15690.942 398867312 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4844.7211 17111.1947 3184.3805 2415.5265 4570.5611 4267.7985 62733.1837 19674.643 4230.4955 4428.3555 3847.9267 3847.9267 3043.3268 8582.5193 7611.8736 4028.3776 5499.3455 2598.7333 2707.1721 6668.5484 3804.1521 14309.1229 4804.0733 9599.3598 2368.8449 3616.0939 4991.5594 2922.0764 5074.4258 149142804 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 17978.1094 15602.8131 14343.3901 12856.7134 5937.2823 31751.5923 14355.0896 25637.921 15360.5526 19983.3498 77115.4518 415617.5342 18111.9852 13780.3012 31192.1924 17869.6428 17869.6428 11294.4902 33074.347 16963.1913 18683.3315 44267.9684 21513.5811 10901.032 15737.1824 25255.8662 18746.4756 40235.4486 20710.4933 27772.7488 10358.2552 35772.0721 24528.3115 9807.7962 21148.5913 212711737 dmsa Organic Remediation Others NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 8040.0567 9090.7835 15473.5531 8361.0851 7823.5837 42638.9259 3901.3476 4605.9747 5507.7579 8194.4548 62698.2957 14628.447 12584.9358 11034.2163 4526.309 4526.309 4188.3889 25745.5549 9319.4844 26366.3446 13548.3326 4737.8823 6472.6886 4464.9841 14216.9544 41747.4092 22267.3089 18544.7262 33070.3972 6300.9411 10735.3087 8065.2231 216484.4859 6648.1769 256360247 ara Carbon Cycling Carbon degradation Hemicellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 13457.6692 5515.477 2552.8812 9970.2775 4694.9389 4291.7902 7275.8609 6936.9363 135292.0853 4948.7462 10326.1556 14940.7858 11707.2698 11707.2698 8936.7658 12808.0428 9937.1738 8301.7107 11322.6786 11011.732 17284.5421 21448.294 7824.5094 6664.0386 19740.7702 15771.888 15868.9878 6721.3701 13226.1454 8462.9583 6178.1968 9059.6657 315644933 cda Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 5314.0849 13269.6406 8043.6004 4206.0438 4769.4679 8277.9147 3541.5109 20689.3291 3984.3476 6031.6065 7051.5201 7051.5201 7942.3451 4869.0949 11788.765 17569.5464 3996.1027 5303.6176 5178.3352 11463.2865 4302.168 4694.449 2193.3637 4461.9989 3805.3726 3485.0336 6501.4472 298719883 PRI Carbon Cycling Carbon fixation Calvin cycle Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6553.9824 9598.8907 3041.3602 3501.5254 2354.0743 5196.7828 4535.7687 4616.5036 71741.59 9475.7397 39375.1551 3214.5425 3214.5425 3997.4844 10978.5981 8383.686 6562.4122 8732.3095 7216.6468 2859.9689 4076.6165 7369.6863 3944.8886 15958.9153 4177.7081 10509.7358 3676.7102 5365.8089 4789.2544 3728.4115 6546.9885 103484273 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11577.5799 6849.1675 11247.5597 4546.6659 5098.5166 6969.2599 38804.2812 8381.5848 92813.3204 10576.7688 18653.7067 14856.463 11052.03 11052.03 20889.141 15073.8816 7695.8397 14855.7965 6228.2142 14351.2526 7822.6437 16981.6225 7641.5116 18604.7677 5151.0383 8327.183 30876.5039 2342.8207 31976.8869 7741.6853 80728.1742 10599.2514 302865270 amyA Carbon Cycling Carbon degradation Starch Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 113548.9833 25811.4899 209060.4108 38874.2913 100937.3178 10771.6244 53750.4149 77108.6554 61751.6886 64101.8115 83854.9738 54970.821 1032856.8811 41836.6087 57969.9553 141577.9818 39705.5921 39705.5921 35142.7972 98338.0587 38293.5367 86865.8095 69375.8406 46271.822 36970.6075 21473.7211 66870.2493 30080.0031 109080.6522 49040.9916 84826.1794 84545.6186 68194.5566 56167.7334 40387.1004 189733.0701 385674661 limeh Carbon Cycling Carbon degradation Terpenes Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 12897.7099 4700.3655 25703.0777 55698.03 31492.0957 8580.4809 25672.7729 32617.2405 15683.2696 34254.6222 11374.0285 483843.2019 20413.5096 33597.5431 51214.8365 35176.2269 35176.2269 23778.6889 31199.7864 12771.4733 7654.4794 9008.9899 11761.4478 5789.0113 31398.8343 75753.6063 9008.3135 21693.4807 32076.3144 51894.4243 10051.5312 11937.8539 20035.0405 25068.7387 9115.922 112462653 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12926.8661 7461.5213 12146.6889 8830.7517 12549.9944 7885.7956 3833.2556 4087.5593 8379.8084 11039.5372 5129.7185 255027.9609 11144.093 8097.0333 9980.8021 7043.6959 7043.6959 6076.4781 24538.4771 12370.8654 25627.3908 16808.8527 14310.9002 6487.054 6708.289 11730.9895 7602.012 23016.9726 13581.9071 18554.6823 7900.7819 8894.6702 9353.251 8594.7024 22177.636 149202329 amie Organic Remediation Aromatics Other aromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 16794.1986 6613.4281 5683.2858 11230.0483 10666.4933 4596.2383 12531.0441 7770.7507 8068.9501 159147.1371 9505.1231 25004.8157 4823.1395 6661.7559 6661.7559 5838.6666 21216.9017 11346.5475 51800.9332 16011.0801 10771.6694 15269.5941 7605.9221 30703.69 8833.7308 40465.8856 15535.0866 15804.6994 8247.8558 9476.4375 13265.1946 6116.321 17017.9749 111019985 pcpe Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7695.7371 4877.4405 6821.8363 36132.529 11483.4966 4286.6035 5048.0377 3629.5436 4055.5296 2567.5159 68176.5484 6118.8852 4234.5628 4234.5628 5547.2218 9426.3015 3600.782 11937.7526 4412.0213 8780.596 10299.5462 5517.307 11217.8097 15792.8101 7668.0028 6517.4499 2660.48 365901003 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 42731.8138 5871.4594 6328.2399 227163.4611 6298.2582 2542.2426 11207.4943 17090.7978 7395.7626 126673.1854 11741.3118 14682.9451 10912.0292 27749.0365 27749.0365 4801.8765 11979.1014 8362.5016 8287.8776 11670.8137 4495.3044 3197.3324 5190.9438 13618.3713 7013.0952 20271.9361 17857.8147 16716.0172 5155.6213 8231.0413 11169.8127 6217.5985 23408.1207 165874785 norb Nitrogen Denitrification NA Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8787.0205 5694.052 16331.743 47812.3311 7016.2825 2957.5711 8060.881 2788.8181 4677.8547 24328.1693 12648.3512 6677.6795 6677.6795 6247.3886 4404.9692 86800.4051 2807.1014 4320.9314 3876.2139 10910.6843 8912.9722 13011.1161 2157.0283 3046.8288 6713.3317 4448.3274 387841493 alkb Organic Remediation Other Hydrocarbons NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 42371.8417 21391.6851 25495.7266 49156.6594 45730.8666 11371.0046 52983.9115 20605.3951 22828.9439 27300.2837 18246.4523 564446.374 28028.8547 29395.8788 40585.6514 18170.602 18170.602 21701.6063 31760.2617 24603.5092 27879.7388 39742.8822 45564.3329 21595.4925 23758.8346 36257.6955 50876.5957 71924.6437 37536.1439 28968.7459 21901.7667 16031.8501 29505.1928 21128.0438 61387.8198 150269889 bco Organic Remediation Aromatics Aromatic carboxylic acid Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 171998.7531 12153.9938 17045.3338 21695.7026 9191.5829 11510.3778 25267.1384 49666.0098 18863.1495 23039.6354 20153.6869 903638.0761 57892.7268 323703.2631 21882.3229 34196.5047 34196.5047 28731.4 36739.5182 19091.8144 86475.45 32432.5001 42197.9959 14996.2053 12706.5022 21569.4292 16629.9173 62233.9335 37244.3979 31430.3129 12965.2756 18662.3932 26450.0657 13670.5427 55949.8246 340554431 gdh Nitrogen Ammonification NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 10466.0261 290472189 SoxB Sulfur Sulfur Oxidation NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 140485.5725 30616.6588 420976.2071 119795.6959 136942.1353 38138.7992 58092.9184 91347.1014 80825.3047 57915.8643 78939.772 128955.5536 1222663.141 139295.4145 113014.6808 90125.5195 87363.7542 87363.7542 55887.4493 105680.63 50301.9492 119075.2448 126289.306 91895.8105 47924.0413 91839.1042 125617.1507 72377.2295 142031.1752 116544.3854 104488.1883 44139.1073 80798.535 88618.9729 107926.5129 1074814.133 124901168 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 202190.5055 69576.0753 29398.1863 61316.2829 30107.8732 112409.8045 580306.9132 92176.3652 65086.9872 113108.1604 120353.2028 1614418.778 97227.8001 134964.8494 116301.7901 101412.0708 101412.0708 51576.4553 157420.46 117270.719 331817.0722 253748.1813 86016.7055 119302.5834 103852.8384 152746.0757 128719.4822 260693.0444 173890.1317 213981.5931 138940.6924 111954.9556 148006.1527 104110.4841 240227.9689 35212661 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 220414.7205 75038.4697 263240.9047 492007.7825 131153.3414 927092.2468 216552.417 327041.6113 87848.6855 174211.86 91157.3849 99547.6321 3123186.8151 123918.2487 162745.156 352073.1714 357673.8325 357673.8325 114952.647 231650.8553 104466.0216 162462.489 128817.903 174738.676 95864.032 82158.534 128409.5051 83068.3509 258087.1026 132277.5352 145997.1243 81761.1632 100616.0244 85785.7615 110960.3153 721382.7507 161164565 nrfa Nitrogen Dissimilatory N reduction NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 299444.5267 19412.0621 37775.6005 37778.2504 48144.8072 29798.6665 186983.8727 89186.7944 28898.42 23208.6866 29402.6781 40518.0542 680986.4062 75008.8606 35126.6836 82154.4643 51512.9184 51512.9184 57085.6074 56516.2329 38997.297 121184.1284 62116.6677 84303.0389 34631.5223 37935.8132 50005.8894 95432.9569 107490.9421 48042.7173 54074.4004 28187.7185 48425.6139 37805.4285 49052.8962 45177.6376 40557184 ara Carbon Cycling Carbon degradation Hemicellulose Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 3721.362 3126.4513 103026.843 3351.2777 3775.1246 16855.3466 16855.3466 2107.4315 8315.5583 183176263 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 8335.626 6086.7978 13395.8636 14321.4094 2969.431 4160.3888 9921.6071 17015.1999 4245.5889 121863.8744 6999.2514 6962.2877 6997.8992 11175.7846 11175.7846 3938.6253 12554.0698 11533.3038 11344.9484 4393.7537 4424.5766 17548.272 4183.308 15349.9582 11119.972 13735.728 6418.9439 11239.437 15999.3656 3192.684 5902.7225 295134656 cda Carbon Cycling Carbon degradation Starch Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 4092.8243 3647.4717 6843.9253 5266.1334 2073.7442 2073.7442 6542.8825 4763.2609 2488.8138 116633900 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6532.6937 86987.4082 9138.6971 9593.3957 6387.9281 3383.7987 9261.8291 18859.3758 8433.2889 136305.8269 8018.3198 6505.3764 4508.9121 9082.493 9082.493 11319.4677 19711.1819 15631.9702 23441.6499 32663.1314 33864.2501 12708.5729 5825.5195 8370.7818 14795.2693 26519.664 7748.1717 10790.9451 6321.3853 9221.8963 11080.959 9732.4279 6402.0143 114766316 phn Organic Remediation Herbicides related compound NA Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 12392.1942 42764.7123 39230.0625 4947.8247 6185.9391 8249.7666 10150.8667 36242.2131 13043.2233 125776.3008 6227.9435 15710.7931 14990.0304 119868.4739 119868.4739 8369.9965 13509.7286 24210.908 45831.7219 12207.0316 8688.5274 10186.6631 19122.6623 23211.8715 10763.3624 23811.8182 29304.1693 16654.7532 7557.6489 12420.6966 9120.9175 11724.6219 6837.9079 154175149 nosz Nitrogen Denitrification NA Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 36278.2619 419667.895 2386.2096 200875.2772 3978.1119 2532.7684 93030.8899 5618.563 2044.4566 2044.4566 5897.1729 3601.4647 6331.5101 9948.32795 9607.45155 50819.9584 2849.125 141747.4892 140710.5713 2104.8657 3129.3087 14590.2582 16016.4271 83972398 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 22601.4055 100730.6299 10222.6795 17682.2762 34587.409 14408.3343 30352.677 25311.1869 13322.7285 21390.5322 32103.6716 16229.3412 663329.6212 55325.0803 47670.0682 40321.8243 26392.1975 26392.1975 28936.6058 46355.0621 27949.0317 47615.9571 30254.746 39345.0043 25231.3123 17435.1989 31302.2813 15093.2962 104228.8599 23324.0743 43929.1692 34073.2586 21259.8424 32794.4426 16553.0025 45724.0033 109290256 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8743.3392 4219.0206 2800.22 5575.8134 3930.6002 3875.6492 92767.1924 4003.6143 5513.3511 5188.9071 5188.9071 3408.4404 7586.5388 4439.9807 3506.7889 18922.8108 9578.6299 5264.9295 3956.7763 6157.402 2669.7318 8680.392 5094.0536 6304.8545 2784.6527 4346.6487 4570.577 3619.2697 8233.8926 307132352 cysI Sulfur Other NA Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 13927.9481 14128.8796 17801.8729 28363.575 12462.2507 15015.042 8521.8661 4641.1191 21482.8639 15584.3521 25543.374 329729.092 15441.3039 20895.1129 15461.5986 15043.6015 15043.6015 11752.9838 32537.9634 16642.2891 14725.093 19016.4333 18638.5868 7840.2465 9587.2253 32246.1464 10045.6243 36536.5241 26323.6447 29061.2298 11910.7672 12007.2693 11027.4833 12382.2783 21064.8629 154253762 ppx Phosphorus Polyphosphate degradation NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 10515.4738 15346.584 10237.8112 14941.6757 13958.2483 7917.7439 10832.3219 10435.0334 8772.1249 6730.728 162364.9682 8036.5519 11528.6254 13075.4135 6056.1014 6056.1014 7721.2784 18599.4262 10760.862 75762.4894 735135.6174 24232.0145 5564.2184 5387.9783 11333.9945 5231.6363 23878.618 14062.7307 16167.8207 10184.1842 9688.2529 10005.7356 7306.8569 18658.4099 384153782 urec Nitrogen Ammonification NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 102594.4596 42728.3264 38705.158 27597.8717 21916.965 50754.6236 95224.4431 35931.8347 40856.7358 128122.1507 96861.019 3573651.2127 64386.8029 83697.1443 64359.2495 83840.4745 83840.4745 38531.6652 95362.731 63846.6931 62077.9834 207150.2255 49425.1161 41211.353 59107.4767 134802.4054 55538.0133 1027562.7214 101446.6148 99712.4629 78517.7145 118265.2275 78616.9118 56898.5456 118770.7659 189421715 ben_bcla virulence NA NA Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 33083.0573 110592191 nirs Nitrogen Denitrification NA uncultured organism 88783.7196 22782.7093 28315.5224 34944.2011 8665.8389 33767.2724 24418.7719 23134.0449 29280.7529 35264.5432 29928.6051 1122776.7367 33590.8307 26237.7285 49313.6671 92727.4125 92727.4125 19597.4896 37790.3211 43624.6997 59268.8658 33528.908 31629.9298 18808.9461 16247.9202 40605.7985 23636.2043 64553.4358 40337.1606 41894.913 22220.9126 29092.2409 29589.2037 13212.1656 158465.9812 91802339 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 47604.3892 79798.0301 364294.5356 34754.4181 87148.072 109873.2949 58450.6169 67335.3463 155050.2545 42113.0706 64800.3297 54444.622 1194859.0509 50451.2731 55213.939 92030.6209 50840.6824 50840.6824 26540.8038 82968.8753 41475.6376 42821.6038 193347.1684 51767.6737 32177.976 24357.9444 69441.7357 87964.8127 133797.6661 55461.893 102096.1716 38227.2403 49792.2576 28167.401 45988.8123 55578.8631 226188362 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 4412.6277 4019.2764 6655.2343 3935.8552 5373.8288 19224.642 7792.7996 3732.9479 2414.8926 64999.8786 4644.5588 6855.0628 4520.8665 38239.2767 38239.2767 2664.7249 7207.5837 4706.1243 4165.1787 5724.3191 5475.2587 2202.8345 3559.0947 6155.57 32388.3858 8673.4311 5345.3442 3532.7298 4483.7717 3590.0173 4071.9482 5963.875 119371706 narg Nitrogen Denitrification NA Comamonas nitrativorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 3714.9938 23771.3357 7081.5476 22970.243 6259.0517 4316.0342 9538.9855 8534.5818 9402.6287 6565.2808 669981.6906 11549.7472 17336.9688 8294.4489 6160.8962 6160.8962 12759.134 9353.0223 8242.0268 3620.0242 7585.6842 7093.9524 4979.0592 6892.228 22234.0263 5973.0212 17915.7221 14602.423 19671.9285 6266.6641 7543.2965 9179.187 3391.5524 6240.4837 197297368 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 5626.7602 10771.8754 11092.5872 7161.7205 6825.5396 3923.7753 3422.4135 3487.1644 163794539 mer Metal Homeostasis Mercury Detoxification alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7528.7811 9420.5716 31425.9244 9391.2924 6750.6804 7944.0846 3722.3795 6401.9669 7988.5984 5747.9194 152129.42 9991.7668 8975.0743 13316.6872 9002.8075 9002.8075 3450.3357 18575.3004 10518.6754 8833.2675 9212.6205 12459.7028 6810.0209 16666.6518 7354.6851 25877.3503 17665.5263 16260.1695 9454.6227 8159.6527 15477.6128 5121.2075 8816.7115 189345315 dsrB Sulfur sulfite reduction NA Desulfovibrio africanus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 807816.2204 81325.4801 349479.4474 548356.481 3029683.7767 386751.4056 529806.1791 435813.8413 201755.3817 335217.0809 494725.7466 375689.4686 8059931.8107 736237.905 815501.6675 887157.4052 539162.374 539162.374 339956.0258 456476.3327 196085.9916 316501.0311 513861.8657 700026.525 175588.3643 223056.8276 721766.5398 260799.5348 794111.941 371294.8246 479083.3375 215436.4777 280042.5774 327346.9011 281971.6831 1170548.9864 118168061 msad Organic Remediation Others NA Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7685.7607 14047.679 7873.0594 12946.7255 9899.0731 5039.5979 4280.9347 35866.6867 6667.4606 102239.432 6052.9772 6349.7418 37705.2245 8864.1746 8864.1746 4167.4846 24607.1603 4387.7977 4272.9661 23599.1282 9403.5631 7049.736 7337.4951 53559.0347 6851.5042 14523.3558 5879.4865 10086.7188 4285.403 4111.7947 7055.152 5933.6476 49393.0333 284013206 mer Metal Homeostasis Mercury Detoxification Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 14304.5117 7987.6017 13186.855 11276.3503 7806.1272 14639.7615 8400.5671 9244.9294 20872.3485 11899.7625 9022.248 159843.7254 13645.5633 11120.5805 14504.3717 6760.0129 6760.0129 6788.1847 19530.6587 15052.3035 9227.5123 21220.9182 22257.259 6858.1182 10788.3236 22919.9522 41829.6631 39737.8503 11076.1938 23239.2173 10031.2945 12532.121 16846.6307 10777.6972 15719.5084 149752561 ppk Phosphorus Polyphosphate synthesis NA Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 49219.9689 28582.1714 62953.4707 34322.4596 17542.4275 11393.9951 34331.0606 23868.2371 23519.4759 31977.0041 48333.2299 35633.5538 672524.3584 32088.2728 58639.189 53157.7918 39940.6304 39940.6304 28087.598 65022.2736 41124.1302 93179.4395 49673.2701 53079.9852 35864.9352 24266.3027 130342.4582 24443.2219 84182.2573 42928.1571 37576.9861 19926.0443 43205.9294 38751.4158 25037.3916 42732.4109 49530583 xylc Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 12624.0632 11103.9026 10399.8672 4163.9249 10310.34 4168.156 5193.8364 7942.1279 8940.6848 8791.1495 5114.2518 2321.3131 2321.3131 11976.8677 4962.9261 5066.2869 32993.5561 3802.1781 3026.9965 6372.5691 4431.9716 11092.2095 3761.3528 4720.7095 2143.6321 2535.2825 11176.6583 3158.4271 6101.7751 77456903 trzn Organic Remediation Herbicides related compound NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 57420.8891 56877.3534 56632.5232 112305.9437 110412.9987 44819.6387 111512.4178 52471.2498 42776.9813 57242.5439 45378.0484 25016.1068 1582617.3332 74807.2653 63607.9398 71305.0276 40106.7694 40106.7694 35632.0641 81295.7485 51378.6371 53255.6267 60592.377 93622.3089 33328.0411 24171.3298 78870.3635 31015.2274 103249.087 28201.5689 68109.1736 34657.2382 43464.5047 40352.1151 31743.4987 90095.7932 193085181 dsra Sulfur sulfite reduction NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8146.11015 484070.65115 16790.8627 16102.31315 6812.655 13332.9677 44318.95675 9463.84325 199068.62635 13274.44075 12572.4888 7192.3555 8512.2253 8512.2253 6656.45225 23077.3599 9028.8576 10018.92835 23313.9689 27670.16525 8411.3832 16252.85495 25598.1009 15826.33935 48545.37285 13747.6892 15360.77255 9887.04105 10796.1368 19522.7466 9426.3788 15455.99795 323531915 arsm Metal Homeostasis Arsenic Detoxification Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 22020.8552 17114.8518 36586.662 65132.3113 57171.8298 11714.0508 38984.6029 48628.7154 12867.3409 22528.1211 12939.2012 549104.4302 19362.2849 19861.1022 50092.8271 74612.7489 74612.7489 30209.48 30896.5399 19794.5649 10070.3413 10569.2686 4643.4429 7135.6211 20627.1965 34203.6381 9371.6076 32655.6294 31839.4523 51296.8493 12967.7161 18185.2791 42798.956 17437.1854 13882.5175 257460378 ppk Phosphorus Polyphosphate synthesis NA Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 9904.4539 7796.3311 79511.1535 36362.9447 13630.2763 61788.5785 19557.7298 43252.7848 133670.1351 51040.427 519317.0764 33930.9817 59653.6035 41370.2187 13005.1494 13005.1494 13278.6885 42397.1249 37873.3502 203364.8021 97761.8967 14583.4631 81821.6131 31885.708 29853.0661 26238.4488 143478.5102 23875.3513 29882.4013 32599.9602 27662.7139 30378.8591 24001.9766 151871.0119 94263148 mer Metal Homeostasis Mercury Detoxification delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 31440.0929 19272.8029 7960.28 42720.0346 5507.4601 16175.1678 16286.8818 10868.7408 14382.7949 14525.6539 11393.5293 374334.917 46699.9291 20068.0056 17207.7558 8362.8255 8362.8255 12062.5228 24161.3312 18106.1856 22670.5393 28342.8048 21912.85 14765.2526 7451.1561 17735.0196 12426.0448 36446.7329 22278.972 20610.0845 9617.0798 14921.6035 30939.9845 15274.4384 27378.9629 392985345 terc Metal Homeostasis Tellurium Detoxification Pseudomonas aeruginosa DK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 44343.8977 44920.3223 38208.6419 19683.5718 10048.3329 24334.5441 38582.7057 112009.4349 40668.9244 50968.3613 22636.3363 896681.204 39028.4364 44146.8354 36010.5355 38670.4857 38670.4857 39766.8891 48263.446 30687.8051 268589.2164 51057.9628 177290.1046 23052.1514 25690.6489 43555.1899 21892.7985 89849.5907 61912.8313 54927.2562 20709.936 41477.0363 65494.3605 26273.7882 45635.9247 209486944 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13564.0153 41176.6736 4758.0631 12208.762 3508.68 17594.8099 11627.0953 5038.4134 213022.1786 10455.2638 7956.7373 6942.8343 3565.0661 3565.0661 4749.3401 15648.562 21555.6059 14254.17 8562.6947 7274.3149 5438.675 4493.5818 10322.6138 37045.4101 19418.8285 12561.2748 13510.4711 16774.1003 7987.1809 8222.1909 8711.4282 6489.2697 170721878 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4652.637 2025.0139 4209.7959 4052.4405 62994.0142 5504.3163 10960.0496 10960.0496 2687.0692 7537.3718 22711.2701 11293.0477 10899.7236 2843.3335 5779.0712 8677.1979 7503.1919 3854.9822 4975.3513 3763.8667 5566.4117 5882.4128 3638.2602 60833.8335 73538232 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 74606.5642 8461.8235 27151.7716 13893.7282 9044.9756 82238.1164 73705.7222 25289.7861 95592.2184 37228.4198 29356.7203 2208207.9059 20715.9026 24051.4333 17306.2482 21493.01 21493.01 14291.7542 53207.8576 17434.1987 18056.4825 35538.5034 193684.7179 15919.129 14846.1576 14858.5812 25287.2945 84275.9791 26621.1598 36176.6843 49945.8101 25230.775 22785.9631 12246.6867 18295.5109 313669354 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 3848.3645 149404.8411 359764917 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 78837.7029 6423.5922 14867.0897 9930.6638 7201.8622 12527.2436 25813.7219 7579.6289 13373.4548 17066.6426 9494.358 265158.383 20764.4559 25918.2003 24231.9885 9249.8409 9249.8409 13409.4727 20652.7718 17482.482 15682.391 20295.2194 22130.0326 8313.1961 13807.7731 25299.0617 11648.0878 28588.5221 14025.3427 27945.1329 7403.2844 12115.0443 12296.8422 12375.1285 24739.0017 182435272 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 6363.9548 2647.2902 7404.6628 3462.4142 9184.2988 2860.4529 5790.898 4935.5594 6345.5115 6345.5115 95838.8064 6797.5308 8807.4952 7751.7538 9442.143 12751.1248 3574.1827 3001.0035 5729.3588 3428.5918 12097.9946 8073.6433 22347.4108 2643.3363 6164.378 4067.2792 3914.3084 8189.6051 119882220 endochitinase Carbon Cycling Carbon degradation Chitin Salinispora arenicola CNS205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 6982.48105 11642.5839 5598.0544 2110.2807 6731.3914 9909.6615 59509.3003 8915.0162 6745.91245 3608.3914 4067.7142 8107.7431 5501.4504 7780.91165 7266.28365 3882.2335 3071.9436 8656.37235 3620.68255 11000.67325 10914.8947 6982.5312 4619.1917 6831.2355 3357.7394 12530.508 347734852 amyA Carbon Cycling Carbon degradation Starch Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 11894.3731 6249.258 10433.4414 8949.367 7339.0991 14155.7188 2584.8006 12925.7961 11762.273 43895.6485 218293.9173 12806.6162 10641.2386 13869.9661 16203.2392 16203.2392 9291.9247 10346.461 11019.6972 11561.7847 10866.5582 7745.4339 6608.3035 22739.1368 19070.873 6174.8836 62864.5097 10823.6205 16769.6059 8419.8514 9707.3714 19380.9255 8181.0053 9726.1767 224924161 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pycnoporus sanguineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 17016.505 21687.8668 21503.3596 12698.1691 19628.236 24006.2208 10937.5328 21669.9726 42918.8068 17734.8 16898.4808 362946.1209 23524.4598 12797.3457 19956.6455 14912.4864 14912.4864 10389.9935 32450.3901 12230.2499 11212.347 10352.6727 15848.8177 8637.8666 10002.5101 22058.677 8140.9341 32731.9115 24950.9001 486081.8622 11333.8659 14270.3158 13748.7734 4091.5758 18169.1084 116743212 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8099.3203 5718.3808 8829.3123 13841.974 7755.6329 4801.8682 7761.1124 6551.2344 11635.74 3769.8218 180026.3468 12345.6537 6529.9325 8943.5522 4074.8837 4074.8837 6314.8769 16342.4635 11967.4687 12780.4994 12070.545 17952.4998 7483.6378 5758.3049 14476.1093 4643.2096 19595.5895 8491.5813 15347.1494 5035.9177 6904.0319 8553.0257 6648.4856 25234.8289 78060255 chnb Organic Remediation Other Hydrocarbons NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 80663.4827 35417.1978 18676.34 47411.7637 25037.1094 35526.11 70025.0409 17395.532 101843.5698 79298.3841 45369.8087 2448130.582 54320.0751 67211.595 81766.0001 66343.4995 66343.4995 17239.0289 85645.5553 28680.5371 44794.1539 160783.3418 54237.5603 26690.6769 48630.2001 46411.071 29211.2456 100644.2731 73117.317 69759.5169 16120.8989 45502.9234 78254.2283 32503.0168 41261.6659 291338181 amyA Carbon Cycling Carbon degradation Starch Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 53167.6967 7321.8066 11447.3273 2510.3139 4252.6252 15058.7437 4734.3378 7208.7777 37996.2103 80275.3006 17537.136 12829.5578 6559.0909 9282.6191 9282.6191 3129.7698 15299.1189 16341.4477 6602.3104 19532.8503 71165.912 4195.4836 5391.9185 6607.3338 5114.7884 52582.5753 25992.6291 7326.4653 2866.6292 9408.5334 6001.9863 9165.7185 92256.796 93352999 dehh Organic Remediation Chlorinated solvents NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 52185.2288 16997.8902 82500.0811 31958.7279 51656.7036 8742.8122 28309.6541 75593.0275 18944.6907 30868.329 48365.9644 51289.0379 826058.3428 52299.5754 61518.7111 43638.0842 31527.3099 31527.3099 34175.6066 63594.7967 41117.9033 63210.6794 83546.9444 71810.3451 44434.0601 25771.4134 62785.7426 25188.239 88159.5284 56483.6151 58849.3438 25310.8383 42690.181 47383.8329 31733.5231 57610.7966 386849850 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 154387.3188 19028.4542 20937.2104 1886100.2888 19942.4154 15180.4036 22649.0746 18050.1478 21237.6656 41050.2632 32598.1175 453751.2991 83870.7696 42804.7585 23354.9572 21780.3466 21780.3466 36153.9558 39775.191 106633.0662 42578.8251 40965.91 35178.3139 20843.9714 17869.6102 57218.9701 47092.7227 76995.0774 64985.5914 48218.515 24813.6247 37818.0235 59177.9914 17711.9217 293971.038 228992734 ppk Phosphorus Polyphosphate synthesis NA Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 14713.9551 10148.1509 15815.424 11050.0062 16152.8921 6059.8453 14977.9827 9811.7261 14697.9466 8214.5932 270479.3302 16071.1381 10376.8975 6939.2412 6171.346 6171.346 8113.7656 22136.7224 11487.8926 40897.4132 14589.5775 195810.4757 6930.2546 7026.9444 15060.4144 7787.1521 30495.8027 6839.5899 19222.1925 9236.2342 7988.5486 9754.5865 9897.2174 17622.8684 337761064 nifh Nitrogen Nitrogen fixation NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 7799.7284 7949.5386 3908.7427 2176.2303 6342.4082 5346.828 5065.6375 74560.8835 6308.2497 14416.4849 5333.7227 5333.7227 3208.4464 8719.1664 7042.2794 8251.5824 6100.8667 14324.2914 2805.8717 3398.7482 10250.5762 3959.1996 9759.7777 16687.0831 3446.9268 17348.6394 6195.2525 9169.9811 7952.7363 89893343 dmsa Organic Remediation Others NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 24178.8368 336505.8102 107374.8427 5651.7284 4099.9546 22951.1357 73477.0224 12293.2073 25199.4403 20259.0586 666541.3849 9695.0578 61713.1624 18140.0904 30066.4348 30066.4348 10908.5845 31051.837 23189.5491 17065.781 439593.2852 20852.0847 8767.1663 17543.5371 14222.7754 16513.2802 61957.9982 16420.2636 31134.9625 12479.3902 13787.8158 20528.1515 27074.0699 14335.0368 114571140 pgk Carbon Cycling Carbon fixation Calvin cycle Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 111405.9655 142339.3328 96421.0946 84578.9627 120317.3362 123337.3306 137927.3124 47877.3112 71250.0258 61959.9899 88006.7558 1038029.8287 70274.0449 92475.0811 2035928.2832 52407.9647 52407.9647 128425.9777 126536.2409 62104.3701 84339.4876 134064.6337 66811.5658 72765.5106 55079.9577 86590.643 191408.2962 405076.0504 172205.4665 100028.3182 42616.8346 68163.494 75578.0177 133271.79 152456.007 28867630 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 17348.9622 6242.5272 66064.0927 81915.8645 11471.9836 11693.2966 16641.0642 8585.9335 14530.4482 22655.2202 24847.5047 286668.0403 14021.6189 18725.5378 15069.8816 19256.2809 19256.2809 11868.6636 61216.6986 15193.8189 37323.3803 13319.36 57418.2497 14243.9004 12019.8509 22955.9424 18065.1547 50189.9301 13394.7841 17917.7273 10761.0315 25639.1692 16991.1674 10711.5748 20619.2041 151302358 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum halophilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 5670.4951 1560467.599 9784.5153 10519.3863 14402.8862 4536.775 142078.1018 5343.3777 9263.0026 5855.1652 3266.3886 3266.3886 4284.6056 7984.8055 18844.6 13045.6462 8659.0792 3401.0637 3471.0351 10478.2919 4060.4069 27958.0171 11904.9127 9865.7933 5947.3644 6221.5972 5186.3591 2260.339 78220779 phn Organic Remediation Herbicides related compound NA Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 22577.2026 23917.2518 358423151 pmoa Carbon Cycling Methane Methane oxidation NC10 bacterium enrichment culture clone 9 superkingdom:Bacteria; 11077.3067 9235.4413 11971.7442 26254.2039 4840.9031 55577.7293 5427.7914 10005.8122 11781.3278 5956.5979 952393.0777 15189.0131 9699.9225 8543.3315 31206.7462 31206.7462 5897.4423 22537.7556 10406.819 6823.8135 10252.9304 10835.9658 2943.3236 7505.6431 13793.0705 6951.9138 21776.6394 12650.0667 12289.9735 7761.7434 7616.9901 8753.2795 3914.6142 10148.6617 89512930 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4500.7715 149762.5018 9839.8964 2985.925 4930.588 4646.6628 7660.9346 9354.2416 3941.5931 3561.0437 7356.5657 15229.3228 15229.3228 4294.639 7159.4689 7008.274 6127.2592 8950.1159 5556.8801 3834.4002 4280.7833 8268.1723 3729.6159 8454.6548 4669.8075 9916.278 19392.799 5234.9243 4079.8271 2053.7218 145574544 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 17283.6216 15942.5952 10667.3537 7129.6799 26720.1073 7650.5682 16685.3651 7778.7511 83439.3649 6219.0569 22555.6651 7280.5434 22682.7115 22682.7115 6888.8038 17451.6995 11355.5765 6282.2257 12250.8236 5773.1626 7642.955 6797.4161 20194.5726 7873.6199 233603.0228 6694.8728 9611.2102 8567.7549 6164.1897 48129.6412 22735.2006 11045.31 342134756 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 68178.674 9241.5634 33285.2545 11177.9782 25254.0688 12754.408 11467.7701 15431.153 65777.2151 60135.4479 361929.1814 40239.5897 20452.0443 29590.7128 80538.4443 80538.4443 15477.1076 48211.9522 44185.9569 31496.0328 52068.8693 15137.8773 30879.8639 44444.7101 28478.0753 14762.632 68148.9645 26234.0803 40218.8602 10111.1348 21412.4114 43595.3354 20041.1801 130426.0995 77820032 nirs Nitrogen Denitrification NA uncultured organism 30334.8058 11569.0328 17070.8961 32186.267 24105.0933 14715.0624 24924.0643 19924.4676 62730.3541 26049.8857 26099.437 19470.5829 531924.2169 64051.9115 31087.2395 45557.2444 19135.6272 19135.6272 26043.7556 37913.4364 20720.4705 24031.6936 29858.3759 33857.0968 13868.953 11218.4526 32350.1014 21386.7733 63939.2681 17436.7286 38523.9468 18411.9431 23847.1917 17954.7792 15379.8075 42469.9692 91800661 arsc Metal Homeostasis Arsenic Detoxification Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 14529.9264 2756.3098 2659.9712 9003.2228 5971.5462 9519.4166 6139.3631 5409.3094 16183.4088 5568.3285 7277.3042 3144.4667 3203.6819 4601.2258 6020.8525 17431367 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 10567.5235 3843.8803 3390.1574 6652.2718 3528.8062 11743.3491 93186.433 3811.0677 6195.1307 10439.8115 3015.4459 3015.4459 10677.1372 3424.4061 4444.4842 14882.6047 3696.9264 4549.1568 5311.2336 8134.4338 8007.1534 16144.5496 6864.1513 11002.5095 5153.5102 10313.2006 4348.0927 3992.4469 383781311 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 466401.081 989117.9564 281961.3554 299824.709 389991.345 178941.79 316305.2539 550481.3684 411689.4962 252876.3817 485460.0962 296920.1091 11288385.5252 388903.0097 586883.5411 524938.2569 501633.9278 501633.9278 322725.52 411286.7842 164521.0684 795941.556 671814.6855 408119.176 271247.0662 370050.755 244532.1587 293500.3586 616995.7297 246210.6237 519238.36 214092.3962 276903.2433 239800.1211 231764.2817 833030.7797 86772996 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium thermophilum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 370958.8985 9773.7989 22499.8962 18373.3595 16210.6909 23331.5551 20113.1701 13220.8265 13865.7402 23768.3106 147165.5674 12586.9099 16854.7756 35820.2458 42335.3597 42335.3597 10532.4808 82652.6883 17949.4299 28355.074 24368.8941 7491.3716 19505.7426 22896.6227 37311.8438 52993.1035 49507.9021 37381.9698 36493.4251 21630.7655 23097.3603 42480.3961 16764.737 22269.8187 229588217 atzb Organic Remediation Herbicides related compound NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7060.804 6524.2337 9371.7356 7034.3267 3909.5302 4796.702 2905.3873 8679.6036 15625.7514 4696.2328 72874.8423 7077.8056 11912.502 9099.9563 7577.5242 7577.5242 7739.5997 17069.8835 6823.4233 6422.8072 14366.4004 12388.0914 4348.8246 5742.0962 8601.7794 4229.9881 62997.6703 17439.2686 10112.5687 7721.7214 5334.3018 7924.7397 3451.0946 9006.4443 145214436 catechol Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 151178.8446 512174.6707 109053.768 121474.2758 123791.5009 53783.925 104987.3111 171374.8563 96902.8395 109301.0894 125928.0839 87925.0489 3668734.1189 152297.6388 157879.4828 277655.2006 160887.0564 160887.0564 72211.2716 189579.4665 84205.516 106469.4103 144915.6535 177128.2026 64759.5367 72227.2079 104997.3029 91639.2276 204065.7058 155568.5229 160289.569 87258.2732 143098.3036 83037.7988 74484.9853 142700.1447 340545045 one_ring_23diox Organic Remediation Aromatics Other aromatics Janibacter sp. TYM3221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 10102.2854 4639.9849 7297.5206 2634.7343 34181.227 4485.0704 9333.3805 12312.5401 24151.9701 97115.2551 10406.9895 9720.7692 13335.6755 37117.7513 37117.7513 4324.9696 38904.4611 5047.4508 5565.9818 20377.0817 6556.4046 7535.8196 7041.977 20314.557 12593.4555 25409.3294 9887.5318 21804.3803 9279.5295 30468.8722 7438.3933 21566.4039 8504.9054 256828632 phn Organic Remediation Herbicides related compound NA Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 19976.1259 30769.6326 27819.908 21882.3227 17476.5075 6753.5786 18500.0351 17724.1223 11894.9368 20167.6482 23439.0115 13486.8973 341923.5099 25690.4597 22426.2102 13581.6689 14557.4744 14557.4744 11815.7626 34384.1662 14107.9835 15716.0803 17028.2569 30757.0844 11874.0733 12906.7855 33482.9173 19747.3403 44751.2203 20990.0251 65202.8693 12278.9593 16861.9171 20225.734 18280.1901 32420.5749 254266621 soxY Sulfur Sulfur Oxidation NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8698.9763 24618.5941 20602.6266 47703.6815 13494.4206 4498.4594 27730.8279 4496.7068 19902.1676 76977.3911 41936.3001 288035.3557 22639.4715 41920.1874 28879.8857 14658.2202 14658.2202 18141.2089 36468.2524 12325.5449 33691.8071 33572.8062 12108.4724 10697.3303 17282.2101 45942.2071 26605.4649 138795.3685 27357.3475 29451.8574 31826.4474 41786.7404 27495.8787 39549.8162 12296.5799 284388657 amyA Carbon Cycling Carbon degradation Starch unidentified 21943.8319 8808.6794 9894.9806 12288.3214 7524.1626 5515.262 9171.2493 29451.6517 8212.708 16532.0067 13879.1175 124405.4813 34770.2865 13659.6949 9224.9327 9789.7569 9789.7569 7913.4779 27295.8375 7607.4656 182453.6495 17706.1365 33184.5553 20928.6997 16169.8022 110779.115 6559.4076 36356.5167 8962.8744 28648.0582 6226.842 13778.166 10397.1575 6538.9519 15663.6118 365851035 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 8804.4148 5937.1841 11703.3025 11207.5661 7516.9775 9393.6369 5180.335 4065.1655 9918.9835 8865.8425 4095.2111 143575.7412 6091.9375 7548.1861 4195.5099 6155.6492 6155.6492 5925.0807 19626.7606 6482.3517 9085.5991 55036.3167 11223.7371 5916.332 7225.3507 11005.6898 4889.9841 16668.3018 10852.7602 12423.332 3905.473 7598.4902 7500.8626 5112.1233 11414.8415 356877438 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 95841.9215 88039.7928 65446.4888 19717.6692 51661.3952 20565.9489 29864.965 32677.051 32499.7592 35832.8041 97300.1427 71749.316 867507.8869 206653.685 82917.2999 32800.2963 87765.8004 87765.8004 36655.7844 66297.4085 33189.9264 51413.13 43290.2168 62463.9049 36194.6595 24533.8148 41838.7144 39547.3606 91164.3935 58527.3201 46867.521 23162.7768 39626.6396 52785.9404 33074.8207 180580.6859 259703991 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 159973.9616 5038.0277 8399.614 12139.1061 3795.9493 4842.555 2535.9187 57524.1979 14630.3486 6983.5651 8614.2296 8279.6653 12826.6093 6785.9389 6785.9389 3505.4762 12512.2267 6514.1716 20792.1062 6030.0054 3783.0821 4259.5717 7492.3742 3703.9922 11518.011 8713.2952 13205.5655 3661.8193 10256.7439 22088.2571 13490.6875 8883.2065 121605010 bend Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 13057.8402 8309.2641 13595.2948 8897.0542 9049.9087 7560.2185 12545.1973 13717.9705 8930.2508 222826.358 13711.9544 10676.7327 7737.1622 4161.3499 4161.3499 8240.314 15142.3831 10889.1293 9924.029 9846.4177 19739.6151 5166.6866 6063.7543 15677.7877 6703.2424 24480.6604 4291.3186 11298.3694 7711.1682 6947.9426 8249.2956 6622.6342 15891.0277 23867886 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 6571.4954 5365.949 3615.1506 13158.6195 3727.3029 10781.6468 4092.5261 4092.5261 11717.1893 4345.0061 17634.5941 5961.273 7500.1078 72110.269 6954.8239 5185.2267 2159.5111 2687.0452 3412.9934 16623.8251 343925164 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 250248.9148 20671.978 61798.773 23973.0055 68354.4174 12634.2496 64343.4801 31969.0021 53998.3191 37448.5134 33359.2911 84336.6452 642753.9893 179778.8236 69338.4787 150346.013 108045.3773 108045.3773 155183.3727 172993.9227 50262.1167 50578.2602 192972.1605 56498.2195 298165.0253 52909.4222 98366.3897 59140.8036 105476.9166 68710.0161 75083.4375 111267.5499 57800.4087 113094.6739 42816.8553 66538.89 323139035 tktA Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 134964.0833 102601.4335 90702.3733 52087.7621 17886.9758 181961.8753 247378.4711 69796.5705 71035.5979 317318.6322 108620.6686 6432510.0772 115854.8924 96204.4077 174733.9471 69702.5054 69702.5054 59250.4202 150871.0287 105114.5557 156467.3011 365610.8415 95270.6375 59123.8374 85031.8247 117468.9782 111713.4254 362163.4825 104853.1237 115118.0869 58915.4132 101045.853 122859.7603 107636.6426 109136.9089 384933245 cysJ Sulfur Reduction NA Bacillus sp. JS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 88884.0766 3804.4544 7429.4852 5625.7571 36743.1582 160932268 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 15380.8822 6352.7909 12472.6659 8208.1825 13719.3525 8518.8233 17757.396 13908.6869 35825.5982 129149.3141 4911.7402 4626.1903 12689.5422 15973.0776 15973.0776 5565.9361 20687.3266 8896.7104 6561.3055 61635.0894 5881.6699 9915.4763 12755.7038 16698.7999 109824.5253 16981.0151 17800.1752 11995.9004 5371.4878 6498.5487 6604.944 6235.0138 8127.5341 206114058 nifh Nitrogen Nitrogen fixation NA Pseudomonas sp. AF-4B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12574.1986 10764.5321 6058.7726 7569.8503 9605.4482 22747.6998 4008.4801 5752.5306 8106.9803 4121.4831 123018.2127 13312.3309 8955.9171 5558.1754 2957.7387 2957.7387 5662.2938 13222.8928 6694.6581 8002.7728 7192.6516 9258.155 3374.8495 4085.4681 8292.963 4221.6916 15465.6618 5519.1007 8673.5373 3764.044 5391.9576 4902.3412 3079.0614 13458.4367 112462785 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 116964.458 45735.6427 9864.5288 6572.5271 11066.2808 9882.5189 6674.1353 5717.9499 33174.6328 14424.6754 7837.7764 272991.3589 10903.4543 12313.0291 13727.551 18827.6504 18827.6504 12188.1238 25766.622 17460.8244 90206.7098 17394.6094 15954.45 13210.8121 12074.7293 24340.8582 10756.8406 42859.0782 19761.3837 22922.2074 9601.9125 10325.9769 20352.0072 11058.0081 24404.8151 289976687 trzn Organic Remediation Herbicides related compound NA Arthrobacter sp. T3AB1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 15981.4283 12528.0215 11428.6289 11362.6649 90252.9604 12577.7113 23043.8908 19922.6152 14519.526 6803.7388 345693.0063 37767.5735 19979.5092 6260.0051 6269.1067 6269.1067 10187.6284 22223.0174 17531.3632 12516.0049 20760.4723 19427.5078 9394.1544 6803.4373 20729.5318 8907.6239 33369.2185 15250.4987 19919.2439 11334.5611 9811.3332 10409.4905 8647.685 27121.0191 104304981 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 84371.6416 107278.4953 33554.47 159441.3662 25746.0666 4725.2728 40617.7526 45553.7963 73734.297 83558.4604 96154.4516 82499.4875 1272512.5797 233575.1265 102529.0305 107881.0342 112260.3741 112260.3741 74989.9039 98619.4532 71046.7095 79320.9208 168649.9276 56209.8725 60229.8796 94148.2268 68886.554 94015.526 176932.5242 77635.2125 100942.3088 34826.3678 78126.0599 136559.7302 116124.4288 72752.7293 115376666 alkh Organic Remediation Other Hydrocarbons NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4719.8072 15212.3362 5331.7539 4803.9354 4024.0879 62923.9619 2266.3387 2266.3387 2669.8116 5534.5834 3468.0118 4741.9986 8882.3636 5264.2013 5696.1866 3923.2656 156255128 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 5537.4576 5138.9893 4732.552 2273.1021 2410.6184 4051.0959 8255.139 4500.2107 87992.9328 6706.7694 5675.5552 5477.4677 2315.3719 2315.3719 3555.3617 8601.8177 4999.9592 4010.0449 6130.0498 8201.8265 2856.031 3718.78 6407.2884 2487.6537 10067.4031 6393.4464 2233.7783 4256.0433 4551.0481 3005.8415 8748.9639 187438872 nitrate_reductase Nitrogen N Assimilation NA Isochrysis galbana superkingdom:Eukaryota;order:Isochrysidales;family:Isochrysidaceae;genus:Isochrysis; 4937.9739 16258.8761 5146.0586 7530.4438 2637.5036 3275.1831 22900.6243 7562.0474 66732.6015 8680.4092 5465.6599 68379.7048 17933.4077 17933.4077 11908.582 11787.2278 6195.3404 6906.7152 7020.4422 11418.7134 2844.3953 6015.1742 5379.1296 9985.2371 16822.2483 5787.1297 6418.9527 4722.8309 11870.1934 8813.482 2538.3375 11123.1018 375080882 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 25034.8937 12022.8002 14714.7291 26340.4533 21120.9351 9014.571 18341.7309 16038.6114 13032.1862 25695.6029 28017.8118 12608.0532 535049.792 25114.8067 25868.1744 18643.6267 11556.4766 11556.4766 14870.6757 35268.8099 19397.9015 20710.3319 26207.2694 32605.5356 13718.7285 11348.4825 27478.5341 11816.1905 14264.0694 13973.598 27861.1917 13579.9068 13017.9403 18496.8064 11818.6889 36011.3764 160891440 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 5060.0209 7048.887 324967195 linb Organic Remediation Pesticides related compound NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 9952.7216 2980.6003 2960.498 9319.0557 3287.3434 3287.3434 2953.9619 8957.6769 5931.886 4042.6794 5868.2668 2496.06 6249.7656 3516.1585 5051.6528 7995.2213 4302.7688 8115.7726 7245.1602 2385 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 14873.043 78220709 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 23805.1973 5011.9197 7739.3938 9922.8015 5796.7026 4705.2432 6315.3013 10237.9782 8673.961 154892.5695 5305.38 8700.4977 7528.1495 6443.0238 6443.0238 7227.6702 16115.6408 10951.8778 8566.132 15526.9446 6177.4394 3531.0657 8795.6805 14272.7169 3896.1581 39953.8408 9907.9827 18703.3196 4764.1325 6378.6589 7418.4057 5065.7757 149549.144 222440038 pcpe Organic Remediation Herbicides related compound NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 51610.6836 24775.4796 41433.2355 5325.0585 155319.2714 25766.004 197545.3333 19035.7974 71287.5674 140002.7028 12549.1022 45967.8534 131920.1094 28886.4204 28886.4204 17062.2917 34961.1359 40288.9777 26139.0501 29988.4767 29651.8325 31602.1985 19074.8661 54261.6391 28467.7464 141517.2515 28883.4695 27964.8435 11184.2152 35736.2718 30570.1604 21669.3938 28195.885 114341341 mer Metal Homeostasis Mercury Detoxification Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 8036.2518 11761.8168 7990.5415 9383.1585 6680.3799 4556.1496 7564.801 14472.2976 4764.8224 68524.1232 7154.4969 16138.9333 4868.8096 18751.3622 18751.3622 8879.9087 14414.5662 8189.8903 6586.6312 6760.78 10161.9609 14535.9777 9017.191 9568.3177 11002.2442 45368.0413 4496.753 9966.8413 6425.0983 13341.5325 215930.3591 4853.4538 5880.9785 77019723 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 224233.6374 603395.243 216461.5993 304810.5593 2638167.0888 139211.4163 251194.8834 220895.7898 137920.1893 195794.1561 241417.954 136719.1104 5080765.2313 304086.0662 271266.7104 331979.5792 246488.2015 246488.2015 238911.7679 231740.3884 158848.5596 308208.5944 175369.6244 325528.4074 128853.5568 160049.3661 276651.4279 116313.8021 669846.4208 452725.613 244451.2633 116067.4143 136334.1641 228389.5052 110726.1444 506347.0532 170748717 nira Nitrogen Assimilatory N reduction NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 131462.5224 37694.5439 13061.0399 30080.8291 5111.4692 17523.8732 20059.5263 40394.1434 30236.3972 75117.3841 24358.6022 378705.7495 32150.902 28123.2156 50527.5045 25015.5002 25015.5002 16693.243 52550.0087 15629.9795 22814.2763 41750.4515 29401.9772 50045.303 20216.656 20250.5152 31936.1848 78019.9315 15687.5841 28059.54 28255.2677 23129.3877 49637.9809 19048.2302 53905.0838 302867323 amyA Carbon Cycling Carbon degradation Starch Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 31410.7935 20946.001 11088.9161 10855.218 35113.2221 10389.9124 19316.769 108276.4568 3772.7978 13951.0581 22096.0988 25925.0662 272804.7308 12667.2137 24154.601 28845.6234 23017.3479 23017.3479 19812.3475 35495.3864 21532.876 28185.1588 34918.4464 10553.0686 16142.7705 17162.384 21607.8477 15214.5172 116088.0119 49121.8543 38768.6985 11669.3211 243427.2547 23092.3702 184729.6836 14610.3923 91787734 cmci Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 30329.0216 11468.3323 12444.5819 9042.4908 6115.4922 5975.8821 11864.4277 20913.9532 20529.4428 9949.5039 47835.8749 349112.1367 13026.2297 24531.0292 66108.5432 16055.1073 16055.1073 7718.9539 27526.6476 36217.3363 23104.5453 22144.2255 28748.4005 20589.4678 19409.9421 11962.76 11645.1986 36029.0118 22011.6646 26505.0553 8113.1336 29925.7065 29632.7344 8903.664 7003.2789 197720421 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 8645.7264 37304.7712 3930.9793 50579.0782 4615.743 4214.9986 6620.8779 8639.4716 25603.8251 13734.7069 5828.939 202935.9326 140902.1194 7752.4955 9726.0142 5000.6486 5000.6486 6488.4789 11353.6921 8589.4759 7576.8407 13688.9299 22975.7292 5863.2375 15697.7079 23743.2602 5458.4597 16523.8599 11468.2577 12080.7452 3118.4223 9868.008 8467.3278 3192.9403 13865.0959 146762529 actin_Stramenopiles Other Phylogenetic NA Nitzschia closterium f. minutissima superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;family:Bacillariaceae;genus:Nitzschia;species:Nitzschia closterium; 3836.2943 14969.122 22810.1397 9008.3034 3030.6097 2816.0417 5053.7628 2324.3728 86412.1854 3912.2691 3910.3214 5607.6342 3990.9368 3990.9368 2717.0159 7935.7035 5608.9997 4108.2068 12389.6757 12398.5314 11326.3015 7192.3384 9186.7084 3373.0801 11007.7786 2236.6511 312168581 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 14503.3558 2924600.2282 752524.1308 13178.9036 13406.3056 7575.8364 5162.9709 2539.2473 6959.1355 10633.7369 3932.694 116759.1532 11260.1031 7716.4156 6575.5237 4580.6338 4580.6338 5015.3801 16086.5565 9340.8021 10633.1805 8708.6018 51249.7521 5143.2825 4616.0988 12650.2181 3554.8325 15325.2722 3762.6997 10561.1382 4929.597 8560.5487 6128.6869 4830.1916 91878.8205 350564659 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 4587.5661 6738.1264 15550.5914 8498.9049 9472.1341 9271.0616 101780.9756 6984.6873 8537.3708 3900.7233 141783.2347 13591.2281 21819.3974 5270.6227 3923.9921 3923.9921 4642.6054 10068.6095 14216.3224 7476.0326 7243.1075 6230.5895 4034.702 11770.5807 15764.4551 73061.2757 11547.1017 13048.8514 6558.381 34156.2778 6766.3295 7647.6849 11661.082 302550560 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 5803.5812 3543.8623 4852.8979 5455.9419 6721.1362 3380.3986 108019.2652 13949.6732 6078.3437 3048.0793 3048.0793 6578.886 14600.7128 10198.4766 5071.6843 8346.3634 8377.5945 3792.6761 4379.2434 10517.1626 3728.404 15875.2818 16005.6571 11610.6579 4288.1697 5814.072 6091.1451 3636.5617 10121.3616 209966627 terc Metal Homeostasis Tellurium Detoxification Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 20609.4979 4733.8146 13361.894 17618.8334 3872.4586 3399.0328 60038.5867 21976.941 12750.3037 279053.8973 10628.0063 7339.8225 47408.3099 15253.0393 15253.0393 15134.3025 32226.4496 12999.8786 5853.3181 14532.4439 14356.8225 11762.8153 9810.6499 18665.7273 8293.8557 23238.6639 23738.9142 28818.9792 9394.762 20613.5858 128926.8299 5430.7729 14261.3928 258560757 amyA Carbon Cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 25502.2384 11203.0483 57574.8762 12171.4742 40745.8725 5202.5975 18126.0878 28608.6688 38937.9258 27091.6894 60059.37 34579.4773 499692.9294 49251.6986 31587.8253 32384.218 46696.7376 46696.7376 16593.6165 66206.2 21625.0743 19233.1846 77300.6035 21949.4277 17034.4582 46190.6454 45879.3572 18498.03 131870.2288 34561.2939 29037.4046 8735.5737 28106.3564 29801.612 21952.2653 114349.8196 357201743 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 34272.6623 165959.7727 17071.2559 10338.1678 21489.9185 3548.0862 3984.2688 18762.7515 7155.1761 114916.1574 10185.1258 3750.0412 10629.1333 4260.631 4260.631 3642.8056 6008.396 9752.1763 8143.0512 13678.3768 9155.3191 11749.1905 4022.0311 5214.1577 10015.378 9908.409 6392.3714 8230.699 3716.2028 3700.5766 9347.5495 2620.7833 5322.93 116696222 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7187.18395 4894.956 8641.4928 53094.5433 23552.2209 9024.46335 2195.41835 10976.83605 14766.4023 5793.7471 224865.26015 17653.90945 14122.88155 8665.98765 17141.2219 7022.79275 9771.2219 11803.1468 4085.4977 6344.35895 37240.17515 17530.09425 10636.21595 10671.89195 5690.92825 8646.79125 239986218 cysJ Sulfur Reduction NA Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 59937.9306 11829.362 12993.5299 18550.6447 59058.8633 79076.6707 9355.7333 76349.4517 9804.0368 21166.0884 33463.8537 27740.6743 439603.642 26181.4651 34087.8823 37786.9172 29987.7231 29987.7231 11971.1826 31982.212 25481.2499 14228.3177 42171.0632 26983.9386 10933.9976 13878.5605 28903.517 18345.6119 105307.0692 31637.3047 35322.3667 10508.3073 34797.3786 19187.427 18640.1529 17220.2589 24982949 nitro Organic Remediation Others NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6272.2684 22875.621 7942.4138 5719.1344 4514.6975 4621.5874 5430.4694 26021.3661 64872.1958 9129.1034 12345.3653 19493.2732 19493.2732 10630.0035 16405.0813 13836.9104 5215.6304 6110.6746 6346.563 7057.4069 8406.6506 14293.9154 41037.4671 9373.3701 5933.8992 12796.1376 8588.9895 7059.412 302465463 ppx Phosphorus Polyphosphate degradation NA Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 62670.7366 21784.5752 32281.1603 56291.5066 9194.6578 13915.6063 34344.4594 9592.8292 47053.9219 331081.8867 32782.6354 2079797.3853 41576.6246 35709.2539 40319.2359 75463.4986 75463.4986 42772.1223 59140.6631 32813.3253 56807.3124 89772.1572 54119.5612 19907.212 28583.979 43662.9213 58714.6384 112835.0096 36733.2672 76859.9471 36704.1994 42563.0101 40069.7507 31569.5298 27734.9198 12802200 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon 85A superkingdom:Archaea; 120925.1454 48922.6878 89480.4234 76820.7427 40140.3831 11350.4621 6036.4048 25934.2395 16696.3479 34461.8736 453458.9726 18886.2059 17635.0196 16817.7092 13003.0314 13003.0314 31468.8501 29523.9653 17748.2547 19731.12 18034.1168 27721.5767 18880.4592 14875.2365 20185.823 20067.3057 71963.6826 52437.6112 23595.9481 10690.798 22114.5281 28959.7129 20015.1006 22645.3264 315665073 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 17711.5863 14226.9233 15491.9801 8633.4806 7556.2146 12027.9635 19685.3735 11820.4739 13899.9532 15962.9191 9480.4942 422060.1439 16496.592 24754.9798 20639.1597 11538.312 11538.312 11037.8864 22806.9538 12458.1281 20154.7577 18190.1135 32997.7962 9554.5198 8217.4038 19129.2 7795.2294 35782.0924 29420.6082 17435.5619 7202.4246 10697.2913 12099.2353 8487.2612 24799.7876 89899153 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5207.845 7750.0198 4398.3816 5774.5543 3290.7787 6524.2814 25994.4926 4135.6977 94285.4493 4801.2849 7107.6646 6136.9293 6136.9293 4385.7777 9975.2612 3950.0132 4195.8212 5635.2455 7455.4356 7074.218 6514.5472 7973.8411 6378.1596 3374.4606 4484.3654 12657.7378 4830.3705 5878.2779 9142.3166 4342.1327 5288.4802 110808296 dsrB Sulfur sulfite reduction NA uncultured Desulfotomaculum sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7475.828 3998.5577 8956.7661 3070.3831 7890.9125 5331.7307 65335.1504 20693.4207 6959.0442 2173.8863 2173.8863 3164.8878 6587.4141 7765.6925 8469.9239 2275.538 409392330 one_ring_12diox Organic Remediation Aromatics Other aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 6487.8468 26859.7338 6591.5256 7921.7727 22159.4802 69077.9206 6233.0906 4018.6232 13371.4445 10191.4624 4646.533 170835.3265 15462.1316 9332.1598 8410.7606 3687.3738 3687.3738 3924.1343 14973.4779 13555.4048 21499.0296 7321.2626 18394.1345 4293.4288 4936.0454 13962.5813 5767.9603 12061.3651 111316.523 15979.2174 6679.9902 8615.9602 11621.1196 5274.2863 8940.5464 46409941 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14532.5305 9854.0185 12913.4056 4822.3096 2265.235 11077.9001 10188.2405 4893.6409 174377.755 9450.4494 8034.2482 13331.2041 6811.5738 6811.5738 5564.5294 12005.6805 9661.7404 9659.0267 22196.0847 10197.8046 4945.0873 6086.8992 13492.2905 3929.8767 19346.6717 10663.9428 13476.0703 6036.1514 5153.5952 5552.2193 3767.6468 24882.667 292665428 tktA Carbon Cycling Carbon fixation Calvin cycle Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 25209.3945 14237.3301 15215.1544 20738.6996 69385.5955 8643.2158 19567.0955 36130.8359 53704.4138 23627.7119 24395.3803 69155.1434 558446.0107 39508.1179 111578.8122 21774.1875 17176.1658 17176.1658 22951.2666 35012.0709 21847.3446 38637.1774 281594.092 41327.6738 13053.306 19278.2636 29035.0173 69986.3916 130674.6032 33592.8204 38833.6508 34262.1572 20706.8284 29418.1484 26605.1228 31075.0752 312883227 chitinase Carbon Cycling Carbon degradation Chitin Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 7167.2561 73534217 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4305.6839 15609.1937 4696.039 13884.5315 3739.8126 5182.8376 31921.4141 3504.1708 4526.8669 5150.0456 339610.8377 7541.8278 45825.0029 8074.2155 11461.6102 11461.6102 14067.2769 11073.0658 8699.6717 5012.9081 5209.4654 6309.8443 4821.1663 8563.763 9382.0446 4755.8549 25999.7588 7808.6901 7043.1594 4156.8613 4243.7204 10801.7143 3979.6284 21132.1694 330829724 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 6680.9454 3134255.1054 772147.8783 42682.3127 3094.4203 6107.8376 3532.7157 115129.1353 226242087 amyA Carbon Cycling Carbon degradation Starch Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 109408.6647 79751.5538 29920.9402 20985.456 49571.8006 35084.5399 53019.1239 193190.6167 69184.3037 100417.6951 58235.5347 2006712.7394 61642.0932 96736.7955 220766.0724 60594.4315 60594.4315 34305.9443 45579.3856 64605.4373 39001.5754 60990.7283 113121.4455 66665.9108 117715.2588 89177.8759 46448.385 115477.3683 109165.9209 73118.9295 78972.8653 68245.1353 61928.6727 59327.1728 170580.9826 111223995 terc Metal Homeostasis Tellurium Detoxification Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 12604.3187 24039.7504 16525.8778 4537.3264 4729.4785 5875.1356 6292.907 18958.4184 17082.1005 9542.3384 276003.2557 17324.0716 7299.4848 11675.4819 5767.3961 5767.3961 5919.4339 19596.6331 16232.8652 17199.1386 40599.3947 18667.7751 8672.9637 68415.4431 16798.8619 7466.3268 22797.1349 46831.3945 61628.1787 10915.0803 14323.8924 63790.3827 5867.304 12171.776 78213610 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5118.7011 17096.2486 12610.7675 3479.3762 8207.0952 4635.0874 17651.3761 4147.7492 4145.4809 4558.517 7750.5578 7750.5578 8666.9847 5920.6736 3513.2415 7385.0967 10141.8215 6184.7407 4870.0201 3123.2271 3680.548 6158.4475 1709.3486 31166.9701 6004.4242 83972410 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5502.5278 5073.0808 3486.3346 4397.6322 5884.579 72384.8768 4104.0914 4661.6028 8474.8606 6861.4561 5852.7018 7715.7386 2750.8527 6255.439 2805.074 10922.7928 6234.2469 6994.1746 3654.8212 3188.9047 3250.3617 5002.0301 251754431 cellobiase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6378.0268 8908.8777 7043.01 23770.883 7260.7531 5172.4085 4912.6142 4258.1991 14931.5661 2855.4613 3940.1549 3135.6608 7563.0129 157916699 terc Metal Homeostasis Tellurium Detoxification Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 5975.2913 8498.8668 2914.5822 3035.6836 3198.7423 4221.9775 3227.7057 73576.7716 3848.576 6806.0886 8236.5275 5589.2367 5589.2367 5639.0933 3688.9212 4314.6085 14748.6113 4433.9556 6334.3473 7104.043 23620.2121 3289.5848 6186.9158 2615.8404 139478511 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 4413.4097 5245.7543 3605.0806 3116.3749 5328.3185 9407.3565 6484.6509 3678.0375 66803.7742 8949.3634 5276.0306 4700.2117 4997.0095 4997.0095 5158.3003 10038.5 6125.506 142133.105 5939.5445 7459.1496 2884.805 4875.1419 6601.5664 2766.4354 12465.2514 7108.0191 43212.9731 3790.0857 7901.3013 5527.1761 5570.9497 7421.147 114706526 xyla Carbon Cycling Carbon degradation Hemicellulose Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 39165.328 317578.5832 13931.5992 25190.4608 7814.3702 101457.914 39050.6555 15953.8509 56685.2257 33580.2083 81672.3846 504651.635 39627.3925 58907.1363 24515.6741 29503.9664 29503.9664 13949.2642 208335.3042 28119.1778 23752.7072 49674.135 30838.8935 12852.8121 17238.2103 25126.6882 34998.593 21994.1823 27463.464 42615.798 23799.3447 35329.7087 61893.3023 49266.6475 39080.4556 237858225 GAPDH_Parabasalia Other Phylogenetic NA Joenoides intermedia superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenoides; 13614.3434 10045.3835 7764.8295 8322.4326 15986.5994 13599.7167 4246.0262 22012.2956 20428.1113 13679.9329 126223.7372 8124.5906 17386.5305 10582.0532 5996.95 5996.95 8589.8201 16374.1499 9098.5788 68654.8985 19826.0656 7397.083 10763.6355 10145.8144 9666.895 16138.2667 26890.1619 8110.6683 16794.5062 4425.754 5595.6715 11828.196 10198.5066 16272.5952 70996472 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 99512.4209 3814.6863 5043.4285 13457.3376 5582.6055 5582.6055 9309.2744 7879.6573 4359.8473 3469.9667 4319.5154 83316950 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18082.442 27447.1466 124179.086 17767.3896 24859.9856 236079.8657 13406.2217 45296.9447 31294.9628 23604.587 598827.7467 43939.2109 28650.8407 35149.8902 27689.6869 27689.6869 23333.5002 38983.6261 39030.4459 38164.3922 31757.9859 33290.5668 15408.2654 18603.5046 42027.1858 16125.7842 71863.457 46614.6158 58795.2041 22198.091 28547.36 26436.7555 17952.3129 43271.6434 169239582 terc Metal Homeostasis Tellurium Detoxification Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 18349.4712 5331.4349 9273.9176 26050.723 7224.2557 2923.4577 14314.896 11903.0919 8790.0041 105373.9455 10392.1334 8649.0254 5065.5703 5421.2384 5421.2384 4393.4492 10193.6468 5978.538 7736.1747 12748.5988 15841.8945 5759.2733 8768.9572 8974.5634 7677.7706 29240.6595 6031.8104 11687.8768 29042.9895 5241.2605 10579.8794 11334.0061 17062.3848 290467811 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 6224.9254 11009.39 7411.1206 3513.5847 4081.4745 4444.3092 4187.7485 3880.4076 88763.6464 4280.4622 9876.3 3701.3023 2292.118 2292.118 3556.3997 8295.2155 6377.9358 4759.4396 9271.4227 9805.5204 3045.523 5521.5429 4056.4069 10555.0524 7330.074 3108.0313 4946.3586 4885.921 2898.5425 6904.3868 157145830 dmsa Organic Remediation Others NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 314424.7217 22537.9573 149066.8963 652751.8339 324823.8863 204540.358 492466.2583 259856.931 74393.0451 85912.0405 121931.9973 97841.1715 2281229.1216 97050.0664 128688.9914 204684.3461 148778.4062 148778.4062 146618.4853 131755.0066 74175.1997 139619.6372 288004.6612 97048.4802 45166.8737 81992.3785 139960.7089 65705.8511 169628.8099 323499.6332 198917.0751 50174.5338 86371.6653 74387.6332 180196.7088 127826.8224 54018095 alkb Organic Remediation Other Hydrocarbons NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 508249.8478 173512.0161 516461.9937 148509.274 401177.9922 2169824.9123 581912.819 552771.6974 317509.8081 354357.9893 232301.9252 278258.8158 3848453.6238 340743.6706 650453.3089 801253.7105 522990.9981 522990.9981 146660.5447 654610.5251 476408.808 329486.93 356901.7061 385597.5598 193348.0083 259153.6494 631220.0811 291860.5392 486297.9875 313868.7485 305659.285 346730.1933 243018.1335 263499.6627 230683.0276 810388.674 260652266 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 649854.7487 22084.1279 200712.0591 120661.9056 1464209.5531 8549.4177 137779.3703 119462.6773 105266.2122 102084.505 139126.7963 171571.7385 1977110.4521 134310.5654 129878.5802 289445.4096 116009.1481 116009.1481 69993.2542 142307.1683 63863.2691 104181.3759 280925.8043 158334.618 93471.8727 101470.625 105273.5267 144640.6136 241168.2067 281993.9842 219176.5859 229590.3367 113891.1296 287157.9144 186802.2064 312528.6078 334341835 dsra Sulfur sulfite reduction NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 11458.9689 6548.0973 17797.3598 7755.1499 8427.2967 5870.9568 7065.2306 8056.4319 3522.7803 249768.163 8682.357 11095.8566 10723.4351 7606.555 7606.555 5373.4129 17686.1914 11271.9143 10024.4363 16644.8134 12160.7986 4254.8011 11137.3949 13864.3123 5403.9288 24220.1245 14221.0424 17628.4835 4733.4003 10554.7289 8756.5614 5013.5 13130.6085 349687562 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 15796.9166 16351.1199 12024.4831 13001.7107 7178.9287 60829.1152 16769.9229 17467.4141 26544.5556 18957.1615 9228.5731 336330.4093 15593.2308 15828.551 13768.2124 12657.8944 12657.8944 23939.7075 21681.9267 15615.436 16260.2019 16908.2995 23750.2349 9788.584 8778.8932 21089.0354 77571.3581 35457.955 25509.837 22167.1918 11402.3686 10766.5233 11965.6857 10416.8732 18701.6889 345501586 xylanase Carbon Cycling Carbon degradation Hemicellulose Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 8762.7012 10274.3218 4747.719 11400.962 8461.5425 9637.254 7256.4349 2961.2552 9600.7451 8840.2769 6002.4099 293916.4986 10252.917 9270.3677 7259.9936 4787.0771 4787.0771 9780.2799 14708.4958 12208.2651 8687.9193 12382.4572 8631.8488 8469.7178 6467.6558 14903.7142 4860.4423 20989.2052 13145.6335 17434.5128 52399.8274 9311.8766 9380.7891 7156.7063 14216.6968 239906575 ben_bcla virulence NA NA Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 98544.6349 59901.281 136664.0642 21603.5292 117141.9225 12336.8976 69523.8965 44794.7659 102176.7455 48288.3494 34228.9943 41641.697 852026.0004 81409.7878 45574.0723 71321.4778 42437.7865 42437.7865 46693.4315 56748.6914 31320.035 60647.288 37306.0582 37743.9053 29105.5939 42097.8347 77853.9426 27126.1986 274272.9527 23475.0425 76341.7524 33772.7065 34259.5313 44653.3833 21996.9871 54225.8989 54311638 gdh Nitrogen Ammonification NA Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 70933.274 10996.9479 41494.8261 221446.6 1747461.0621 15365.8165 36087.6846 119642.5615 26778.2508 33726.9136 125631.6888 41280.8554 642852.184 41427.5222 120872.9823 59420.931 54236.6407 54236.6407 28360.7195 55418.1903 31841.5363 90656.1749 54655.2933 41274.6452 41525.9247 25170.7802 47794.9351 21423.1347 64420.8286 58859.5903 80331.8377 19931.6437 31627.2847 43291.1688 30153.719 560786.8665 374419546 chitinase Carbon Cycling Carbon degradation Chitin Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 27768.1405 49630.8709 10566.1905 1903898.4581 6589.7572 9561.1216 46697.4477 44627.2225 25708.2393 27051.9235 556901.3345 70623.4719 22338.8324 171787.6165 18648.9913 18648.9913 10198.005 32670.1605 13107.3099 30931.6603 201822.1087 9607.8557 26099.7366 23559.5924 41102.2324 12734.8146 88822.6775 55323.6082 29317.7553 14011.9026 46585.5223 20187.1528 15872.8332 24485.7687 306528163 pme Carbon Cycling Carbon degradation Pectin Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 13687.1435 7056.7091 5625.5893 10142.1887 116087.6963 6836.2381 5123.9451 61906.1468 14106.0103 40817.7284 112991.361 12950.499 14052.949 11076.805 35741.7102 35741.7102 4256.0182 12737.6004 8396.2859 6099.3602 9728.5219 11059.3264 6932.416 6418.4126 11637.6676 14572.9046 35724.5658 5904.9586 7405.8153 7600.4979 9497.5058 6882.982 61435.9114 16901.8483 29465998 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37900.809 1808079.1465 22357.9859 892501.2769 6996.794 446729.7424 18127.5865 85548.9521 5153.3763 20738.3944 22495.3914 19078.1144 286536.2763 17158.1819 66516.0426 173807.9545 12163.6589 12163.6589 127326.1387 255052.7415 17648.7392 8832.6196 115808.3675 258817.2143 43694.3161 20788.3418 28116.0887 28828.4845 86117.9251 52046.1265 32840.4245 25615.3532 64408.9847 74143.0388 14331.6342 30905.3567 378783111 mer Metal Homeostasis Mercury Detoxification Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 45613.5053 22822.4332 6366.0079 101834.5762 8452.3713 20035.1935 89995.5681 15909.4937 17533.9103 36391.1148 48805.5053 523452.9274 275790.9233 58502.9101 68936.7801 39555.563 39555.563 74264.259 53469.0475 154900.4355 19964.1192 81304.9055 40923.2023 21747.3306 22403.8312 30874.9332 65223.0459 86479.1502 31963.9458 30031.3002 17893.0795 77950.296 20032.4894 44603.0784 19823.8616 348172095 ppx Phosphorus Polyphosphate degradation NA Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 320814.9514 87450.7228 364504.6927 404770.3758 276179.4385 250721.4161 383562.375 505128.2832 201620.1447 213667.9603 236845.7847 208430.0354 6770057.6381 850487.1784 332062.195 949536.0834 293091.8417 293091.8417 364302.435 689271.8968 222766.4041 229648.1924 248165.2725 370985.0882 140108.1636 151031.488 345799.9486 316284.1814 526438.6338 381628.1436 371463.6289 264106.799 287211.5314 243884.2634 241303.021 354741.2333 257477269 arsc Metal Homeostasis Arsenic Detoxification Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 19205.1906 158031.0832 12213.302 8582.0327 39365.5696 8400.4177 5030.9242 12980.4499 35641.1991 8883.7582 123661.4132 5647.162 13694.4757 5436.3094 7386.8103 7386.8103 9878.2501 24765.8549 21205.8244 23291.5134 12479.2187 12574.3234 5925.9375 19475.9631 97781.4148 5103.8289 21419.38 21438.8477 17010.2753 6023.1824 8669.5702 9210.1947 3711.1755 13639.6817 363415665 PRI Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 62136.9131 22321.2907 48987.6925 40311.1772 21005.3219 68163.3289 27438.5412 38552.3991 29793.5532 52412.7555 38896.7707 704092.2843 38869.6277 28457.9641 34216.253 41406.8278 41406.8278 56173.5233 45371.1341 40928.9146 43092.0286 91770.6114 48357.2272 33732.2963 24059.7851 37843.1189 22126.9139 64235.6061 21654.4396 37150.4334 19768.0661 24729.3583 36560.0393 18218.6235 185567.2247 300390370 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9998.1082 6766.1636 12353.869 9436.1533 11185.4377 7630.4886 4695.4317 9427.0615 14534.2714 7091.9501 338546.4829 12407.8802 15159.7872 9407.3487 5062.7967 5062.7967 6902.6606 15735.3706 11867.6781 11674.0231 12767.5288 14037.9011 5607.9828 7122.1957 12663.0095 6304.971 26954.744 13147.6406 12376.1038 6757.448 6936.8332 7153.1587 6938.382 13938.8241 238761483 endoglucanase Carbon Cycling Carbon degradation Cellulose Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 73800.3818 45623.4396 636381.132 14164.486 5958.2335 94868.5667 53172.8838 37924.1276 44809.5663 45818.1848 37898.7441 611590.1575 57060.7119 51174.4532 50009.459 69423.9386 69423.9386 44828.4581 100413.2052 30845.76 43880.7109 86499.9472 80680.3321 49841.148 32967.9895 56412.9206 30444.2913 66884.9643 21037.2803 51563.1214 25293.5533 29804.7556 44678.8372 23385.2784 50676.2787 255020189 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 4774.1209 15482.2673 17478.234 4759.0266 2851.3228 3481.0362 9439.7679 3821.8037 84352.4723 4196.0362 6553.0724 7422.0591 3707.215 3707.215 10064.9598 4628.1962 11778.5607 5710.2991 3797.6434 43836.325 2027.6555 8827.2741 13567.944 9098.3592 6959.8551 15187.7409 18863.5256 21850.121 9106.7513 384371446 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc7 superkingdom:Bacteria; 13204.7341 7771.4106 17296.4479 4746.9133 12398.3996 8826.451 7968.3285 9977.3784 5888.0884 97772.82205 5623.3781 7791.269 7836.4884 7841.1938 7841.1938 3612.155 17357.0855 15000.3822 6611.81385 15368.4008 5483.6606 3155.56215 6468.9554 12084.3254 5019.2745 21007.2024 7270.3298 9519.439 5548.866 7287.0396 8233.3089 8552.4092 10952.4455 117928667 chitinase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 12353.6635 10553.5202 5531.7799 12815.5555 8647.5892 6682.1479 9919.056 4442.7196 9859.5145 11562.7834 6834.0286 163235.8083 12404.7325 13642.9392 11138.6277 10282.398 10282.398 6731.0252 17616.0237 9245.7466 14506.8688 11974.8843 6412.1729 4298.6977 7187.9566 16872.1313 26226.7031 12598.1218 14346.7858 9994.0246 13156.2362 10258.2056 7508.1565 20007.2136 373549237 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 11461.8952 8742.4977 5287.1741 20040.2296 3274.4534 12387.4698 5060.1553 6309.1639 11535.231 12546.1675 176416.9601 11742.7637 25017.1903 13136.9097 14475.2288 14475.2288 13154.0006 19776.9572 8317.5732 8962.8094 9564.341 6157.2378 3908.3976 7524.671 16721.381 8528.3272 39262.0683 10962.0878 14348.3895 7397.6988 32483.605 12277.7613 3882.176 229070.4791 323489766 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 10944.4218 10598.7308 17597.7792 6273.7057 2178.6222 4637.1848 3922.3981 121535.1422 3761.6115 3957.0221 2988.3533 10273.9361 4240.0564 7267.4006 5816.7407 4491.6394 2487.3844 2321.8111 5219.4892 7535.1906 6993.5277 3463.9148 2037.0465 6295.2876 47496797 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16027.2708 14217.9923 3291.3091 2905.1716 4336.6888 4075.7451 4034.6194 4034.6194 5554.2289 6489.6842 57190.2153 21158.0059 4021.4577 23951.4528 124394.6089 11658.7266 3263.0574 333395761 ppx Phosphorus Polyphosphate degradation NA Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 184906.2122 13183.5873 76390.3199 68926.3546 12246.9093 29308.7931 51945.1325 369007.9686 80092.4447 136391.6217 105487.2528 224390.4553 3907752.9906 154538.6736 244087.5533 124183.5083 140070.878 140070.878 49763.6503 116081.7314 50818.0531 128261.9784 565220.6337 138358.7884 158191.9058 85858.0739 133210.7194 98486.9534 184276.7466 139112.3825 94443.6262 90128.6713 115203.1968 211580.9505 127324.8425 155370.7585 114798491 tktA Carbon Cycling Carbon fixation Calvin cycle Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 110331.2651 38838.0946 12505.9828 11006.437 5692.8258 15418.1275 29281.3197 66333.2216 19659.7677 118169.0531 41538.5714 440607.0755 46440.8208 43480.4785 49795.1515 14240.1172 14240.1172 49718.9558 139830.0376 39285.6102 25598.5152 27927.0542 35937.2052 18860.519 28662.3549 32159.3294 30870.5811 56297.0311 17774.9179 31890.2666 21146.7555 90754.4664 27890.3866 44510.0344 20463.0319 86553294 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 44065.9513 15980.468 56925.6812 6886.5403 2662.2585 38303.5546 143535.7452 3185.443 7161.713 6392.8951 156929.8971 7535.387 8016.9919 10930.3953 6881.859 6881.859 19276.6762 11267.7496 4858.7176 6935.006 7042.0079 19668.8323 12612.5486 43496.7381 11037.2087 22777.2472 14265.9388 9474.3809 16503.6189 7121.851 6880.6883 9677.3171 3172.4147 5875.5889 350561528 PRI Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 9190.3427 8213.5678 4795.5913 9921.722 12648.161 6905.3082 10460.315 7829.8805 225913.5 11137.1902 13178.4746 8046.5525 4218.7147 4218.7147 6399.2684 12438.3967 6100.1811 9975.3685 8258.7426 27061.7346 4339.9935 4387.9567 7808.0319 4314.1032 28078.1953 12560.5626 12271.3629 3733.2398 5608.7381 10149.3999 5550.1948 12295.7445 15074404 cysI Sulfur Other NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 269848.5051 39646.9307 157493.9133 145492.5568 164894.4789 27735.5311 65855.5329 346125.5206 58234.9723 45144.1637 94571.2467 145347.3417 1008052.3339 59297.939 153785.0377 195791.7527 78287.1796 78287.1796 68063.9937 91145.2279 68697.3244 192453.9153 152215.1093 79523.0885 59793.3697 58108.4618 73844.5642 94080.2916 309865.5225 94335.7162 141155.5644 111177.2047 64620.8998 145679.0962 155498.0353 201707.0286 319785636 RgaE Carbon Cycling Carbon degradation Pectin Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 11543.0296 24672.9292 2362.279 2528.2609 51797.5694 5332.0062 4871.8266 19226.9785 12363.3323 4630.4905 7896.9911 7896.9911 9046.5543 7788.9348 7366.0687 3006.2403 2945.4548 5494.8635 6051.9985 11017.4548 5442.6405 5663.5515 3831.6336 17341.9723 10763.8227 5223.6847 4476.8637 330467519 xylg Organic Remediation Aromatics Aromatic carboxylic acid Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 10733.4369 8270.1585 5946.9243 10685.0573 5486.7462 5996.209 9415.1772 19672.1195 6148.4702 164298.9842 8418.9798 8485.4024 11157.3277 5089.7143 5089.7143 4121.4673 24033.4635 8165.3685 8345.1396 17716.4818 8996.6875 5597.1235 4349.0757 13005.2908 6533.082 18801.2039 8305.806 11128.7453 5920.4321 10983.3032 7113.718 3956.4643 7126.8784 94425511 limeh Carbon Cycling Carbon degradation Terpenes Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4080.0989 3632.2326 2669.2717 98194.2049 4734.3457 4213.0141 3144.9713 5311.4121 2124.2782 3782.2356 302408399 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 62406.4348 6308.9888 3467.6189 5773.5976 5324.0847 12764.7521 32527.0293 4327.916 266622128 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 9409.1013 5226.1581 121498.772 14824.7489 9707.3808 5109.1969 36502.0392 12835.9438 6857.6492 172180.068 13577.5885 13863.4332 22922.2037 16128.2367 16128.2367 72079.0986 15458.9348 8034.7557 13026.4045 40010.3235 34091.9278 6231.6235 9442.8393 11247.1169 10345.9358 410851.7614 11629.8629 11344.6467 6515.3513 9166.1472 43323.3779 13560.3952 11241.0629 188029872 cysI Sulfur Other NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 43146.7598 123916.9308 73398.8679 5794.5511 17511.7588 13245.3716 221081731 arylest Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8474.552 10745.4452 10477.6059 12336.9633 12550.2186 6076.0267 9153.4106 5714.6254 8322.9199 5109.1994 6634.7577 121604.8763 13162.3097 11109.2141 11109.5423 16898.1052 16898.1052 7849.5773 18830.5929 9107.876 4411.2329 13496.6104 5974.8228 3798.2975 14544.3629 10984.6714 4799.804 36401.3622 8562.2098 137676.909 4217.5787 7000.5784 6802.5538 4172.6494 7184.3467 66801929 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5842.4336 11188.3319 2956.1676 4819.1124 5119.4771 5119.4771 6546.3046 4442.7502 4417.9393 3494.7684 4277.6221 5789.4092 4208.0608 182412745 terc Metal Homeostasis Tellurium Detoxification Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8088.1057 8653.637 15541.3169 5747.6844 126472.7547 4824.5506 2598.0662 6294.3333 10411.3864 8294.6415 122249.814 7035.3144 8785.2389 6262.6397 9246.6355 9246.6355 4165.4198 15539.2549 8494.6454 6190.6649 6104.2881 10866.3785 3155.3602 6152.2814 20696.5269 4907.2815 28418.0179 15520.4638 13984.5534 8711.3638 6695.7347 5387.3431 3782.7778 9593.1433 29125958 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 20535.7669 526400.4135 9924.1144 7042.7335 18609.7702 9235.9153 3622.154 13122.0696 55532.7699 15896.8914 1429410.8266 20930.8685 20872.5452 14946.022 15272.6886 15272.6886 10963.8664 55793.9594 14512.4946 24196.4765 35118.7706 5687.9011 33664.8376 48758.6129 21349.9646 13617.3364 37663.86 16795.7893 23662.6091 14228.8574 13653.1901 38641.4344 10704.1188 21122.1316 374854164 tehb Metal Homeostasis Tellurium Detoxification uncultured delta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6033.5661 7094.87 84720.9872 33669.665 7067.1334 2453.1948 2453.1948 6165.0998 8956.4261 17592.0578 5064.9767 9552.6073 36566.0711 24777.2665 3248.1329 2754.7622 294671 atza Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 25112.88275 12094.0006 15537.7601 4038.2229 16755.48095 3967.3222 18121.911 64892.175 5121.21993333 3360.1868 2901.67055 2901.67055 4057.3596 7384.64475 2570.096 9384.6416 7035.2524 5748.76875 16402.4862 8530.3001 6864.1387 2545.1281 3664.133 5889.1825 51534865 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6816.8236 8802.4221 4009.8736 3469.6913 4277.4352 5166.265 110909.1496 5366.2401 2295.0317 2295.0317 3103.2268 9382.626 5102.4933 7233.3333 6714.8452 4455.2938 8122.5744 3623.1173 11885.4052 9776.2747 8026.3042 4551.8987 4077.786 4086.4051 3970.1679 8162.5722 311231182 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 12051.6419 44588.2092 7861.7746 14973.1724 12669.8423 11099.844 6364.8715 11092.6165 26006.792 16133.2761 216437.0451 15422.3121 12161.1147 9164.0363 7454.3344 7454.3344 7030.2663 142205.837 33134.5343 8448.8134 22826.3547 24884.4339 5150.8044 7201.7216 25152.439 7395.9491 43041.5907 12557.8528 34784.5079 15318.4265 8790.2177 8504.9927 30474.9979 11651.071 93357836 catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 316005.3497 25919.2816 18499.9461 8871.2042 27674.2996 22097.0075 11033.3407 9321.5543 62131.187 37530.8309 10374.7341 31120.5015 36468.0242 109011.5803 27726.559 27726.559 17652.2855 27462.5384 18224.1424 12512.2305 97704.597 22321.5347 10227.0543 11458.9623 30096.4949 231472.5199 111680.6777 122750.9063 32993.9387 47800.7036 23374.776 40976.3422 13823.0938 37935.6121 317397034 pula Carbon Cycling Carbon degradation Starch Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4431.575 3289.999 80603.2055 5485.073 4518.0548 2353.4011 2353.4011 7746.2794 5595.5788 5183.0179 9505.1949 2661.5865 7699.6979 4489.0242 2848.7412 3631.0245 2723.0174 139478535 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 12600.3163 6885.6255 9317.0771 3064.3239 16291.2673 3599.4304 5724.9889 23546.7592 136660.335 5792.8388 6098.1612 4816.5583 3812.4293 3812.4293 3574.359 8838.7738 11559.9816 5330.7418 3506.5815 19994.9889 6871.0604 3381.0076 24472.5084 7148.2065 9166.4056 2145.7282 17326.2692 6647.3134 7619.8147 129664.5174 397733047 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10895.0737 5864.1861 6386.9669 6622.2087 5389.2305 4675.3783 5376.5247 8251.1317 3011.5678 178764.4711 7999.4391 6818.2686 6516.3865 3296.1004 3296.1004 5372.0983 11078.3105 10130.5095 7254.4978 10713.3152 12217.2915 4394.2278 5019.5781 12342.5867 5602.8908 14034.6436 7755.9921 14647.5377 3929.9501 5551.5878 7511.5772 4759.3194 14733.6094 255922080 amyA Carbon Cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 145527.8133 32315.4094 138924.7765 381795.6706 109687.8232 679173.0818 414279.2779 382116.0482 160511.9838 119151.5851 194150.9728 107595.5942 1771879.1172 157907.1335 134854.3276 298438.0656 78784.0069 78784.0069 277750.2353 136219.3738 146933.8868 87983.9012 127927.8289 211157.8059 132660.5263 90296.9337 236291.1082 164998.0613 380093.5504 134816.1234 149265.3652 78475.6456 92946.0102 91969.594 120115.4912 619490.0329 315262852 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8301.3061 4024.7258 2389.9769 8944.1312 7158.036 2344.7341 61472.1792 12165.6596 12343.0711 4651.858 4413.116 4413.116 4456.9932 15550.0481 6300.5705 6019.979 6350.3245 6340.4031 4557.3723 4269.7411 9204.8729 3575.4197 20385.3473 17153.052 9461.0984 4051.9251 3640.56 6214.6221 4656.0839 15255.302 342316478 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4419.8847 260570.6822 8812.2013 9275.6177 3629.4887 9211.7159 2309.5444 3841.3789 5304.6272 4263.3707 3915.187 5752.0431 3822.7816 3822.7816 3208.3244 8072.9572 4262.1669 7455.6057 6622.9374 9008.6262 6758.2149 7556.1996 24351.7659 12078.0086 6381.7056 6672.4376 4105.681 5710.1262 4553.6399 4276.2327 5784.7778 86557792 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4024.3941 3878.8264 8162.3303 6100.1016 3103.5048 10097.1722 10756.8244 2910.0365 224381.3655 5179.3309 7156.8641 8484.6882 3861.7391 3861.7391 5731.3463 18301.5025 13850.332 29591.0498 10026.8896 9588.0187 3672.5603 4889.4985 10886.2908 5280.7528 18065.6667 6328.4216 8932.4945 5125.2069 5288.5673 7568.5937 4526.7041 19261.5718 283479530 cysJ Sulfur Reduction NA Erwinia pyrifoliae DSM 12163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 10467.991 15642.0718 7497.6854 13122.3642 11909.6862 19392.7907 11076.9076 16958.9448 9190.3133 172390.4932 7479.8737 14675.6449 23337.7689 7960.5256 7960.5256 4789.7491 30728.7063 4939.6538 11354.0284 49019.1022 6055.8974 6152.8004 6214.1939 32963.198 21245.8341 11562.6857 11042.5504 3812.0842 18137.4116 12825.4389 6132.5271 5888.7001 325295319 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Desulfurobacterium thermolithotrophum DSM 11699 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Desulfurobacterium;species:Desulfurobacterium thermolithotrophum; 16576.5389 11906.4212 13665.2894 36786.3521 26775.2559 6375.2718 15993.9811 17245.5766 12863.6843 19225.9707 23774.4215 12419.1113 653058.3048 34256.5324 28626.0306 30375.1838 16072.1563 16072.1563 17131.3915 40587.2316 23352.1788 54760.1295 36822.247 35838.8496 12569.7989 13279.7165 31006.6991 11527.9767 56974.4639 23380.1284 37958.5916 9399.2679 18776.4676 21204.6243 10645.9436 34170.7108 379051104 chitinase Carbon Cycling Carbon degradation Chitin Salmonella enterica subsp. houtenae str. ATCC BAA-1581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 13798.0811 9010.1938 6041.0095 7660.3766 9117.2228 5247.3507 161853.2082 6374.456 8319.3118 7499.0122 3601.5594 3601.5594 11798.16 9066.9656 7074.6489 4537.8549 13778.6796 19984.1597 11748.3362 5688.0335 11039.4276 3585.6536 18624.5885 12008.1973 8096.8892 3711.49 5945.3312 7037.689 5559.4632 7739.6507 338234961 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 29544.6277 17701.1121 32059.0369 11306.2809 13526.8027 28013.8677 32993.5771 44100.8865 20799.0374 88764.841 18505.6583 1210079.775 26908.8071 46812.0944 49990.3453 28351.5565 28351.5565 14097.3395 39638.7662 33366.0842 36552.0514 44415.3671 30826.9479 23989.8184 52048.6128 61646.5228 32395.6261 73757.8997 49029.7015 79620.8703 30384.6876 39809.3745 47968.5128 42141.5358 45707.2896 157915237 amyA Carbon Cycling Carbon degradation Starch Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 16305.2399 24422.2469 6254.4168 16659.0054 6936.4669 4184.9625 5926.3965 16772.5686 8077.6392 8709.5899 8296.5105 117469.9936 8861.5369 13849.5757 8324.4075 12865.6496 12865.6496 31065.2808 19502.6138 12967.8664 200734.2103 13177.346 19889.861 6336.1327 6656.0322 79627.6517 28073.1751 36916.4099 10779.9515 17292.285 66645.8958 7274.9975 66202.7054 7487.8669 52987.4005 86748186 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13091.0953 16212.3719 8506.0685 2779.0142 3376.44 4424.9986 2689.2394 2689.2394 7727.4518 4717.7873 7106.9626 3936.7523 3869.7148 4164.9439 10769.9869 10544.5228 2847.144 6934.0219 21221249 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 68727.9813 25804.4385 6045.0574 67951.8613 11846.5994 110794.8074 21799.7619 16610.9233 18100.8171 16885.8324 264267.3983 59545.5672 13506.5365 19540.0161 35498.2404 35498.2404 9700.0211 24117.2085 15835.0231 20061.5134 68886.0829 160087.5954 16160.4342 281893.6185 19457.804 99453.7673 92281.39 12448.0909 40577.6305 16482.9054 46393.2551 21046.1043 194678.3079 33465.412 15597475 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 12351.0937 11202.9238 2551.1486 3404.4694 124501.0208 10223.7676 3767.5075 3767.5075 4283.9146 8192.993 5365.3116 3095.6173 8514.9016 3833.191 10920.6395 6805.7438 5856.5084 2176.2457 3035.9607 170700600 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 21368.9859 38798.8271 16378.2151 18890.8922 4631.4459 14925.1437 29327.7731 17593.0628 14466.0408 16207.4581 12888.2787 446372.1943 28889.2476 29140.1077 27054.0099 12427.256 12427.256 23226.7974 40949.2706 16601.4703 39853.4509 29965.7288 156040.5481 14463.2568 37882.4976 40122.4601 14022.5544 50758.1757 20104.6984 40704.7627 13803.9924 30420.7226 25656.7026 12849.2634 29665.1884 400195035 xylg Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii HLE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 23953.4384 19065.5764 9479.5231 39354.2632 62443.8195 12500.4399 12274.5704 15645.1158 4278.8575 13262.4256 18988.6424 25397.7403 431528.8315 54911.775 32592.5027 14407.1733 23420.7826 23420.7826 9723.9797 30157.2341 26580.9332 13450.7571 14233.3528 19405.1843 10319.6636 11287.6712 49346.4721 12106.2044 40036.0111 28073.921 37115.552 17139.9689 14788.9972 22985.268 10025.6759 16690.4867 124266671 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 9722.6196 5134.647 24085.2094 4108.7464 6166.4041 8029.9701 5910.1757 5510.3129 6272.2443 30128.7398 3424.3224 3924.6846 116741.0092 49286.3735 49286.3735 3115.1412 6390.9255 4258.8231 6213.8789 5623.1948 5136.7751 4116.2151 11856.1364 11916.2704 5537.1902 1805.1654 2822.3443 3104.5481 9641.0856 58582319 pme Carbon Cycling Carbon degradation Pectin Xanthomonas oryzae pv. oryzae KACC 10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7589.358 4330.3399 3007.3403 2331.6476 4959.1671 16798.5295 2705.6463 107325.4831 4468.245 3970.0424 7567.3118 7567.3118 3662.2609 6677.5812 18856.1985 5202.6229 4730.1218 3262.5656 3428.0529 5475.7886 4776.9006 398096225 pcag Organic Remediation Aromatics Other aromatics Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 348209.7574 20269.9348 103141.1814 149953.842 138606.898 31025.9286 368167.5515 242648.2839 367554.1296 147029.2905 175750.6111 205994.6536 19039880.1145 187430.0695 236450.1351 400887.6741 219901.0239 219901.0239 144892.1816 158361.7764 117683.5445 328965.15 336468.261 122787.1979 208175.9518 182889.6092 407607.988 125317.7316 278710.8498 215073.8889 271282.5102 94423.1561 174529.0666 285824.6359 77348.0745 169234.1157 284036150 RgaE Carbon Cycling Carbon degradation Pectin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 13233.0251 2730.0792 398237574 toma Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6069.6505 6380.3735 11773.894 4615.2867 3872.4606 2260.8116 4122.7576 6299.4788 3479.3659 133500.772 7881.9682 6862.2196 5184.8735 3577.5807 3577.5807 4437.1588 12089.5136 6143.8652 8354.8757 11718.9771 9988.5514 6797.2264 6006.4684 7661.2887 3780.81 14352.8048 4283.011 9195.7179 3987.3393 4984.4835 5704.2023 4040.8145 13523.1056 119116094 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 35616.8031 7349.9094 14120.8006 40111.6673 6964.7757 35672.1171 11179.1542 7473.2408 14722.1678 27449.3909 11170.0115 281981.2005 29853.9768 25939.481 29566.0778 22682.0255 22682.0255 10135.1513 30245.5469 14946.5943 14346.272 22106.5062 17210.883 12275.2262 14186.5314 43249.0835 17344.0448 37117.1764 17512.334 172232.6642 8747.2712 14315.4748 16036.7794 11049.8361 17657.5462 376007670 gdh Nitrogen Ammonification NA Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 27340.6367 10812.4431 16956.013 17845.4457 10839.8406 26814.8719 21288.8864 15951.265 21559.1098 30048.2891 11545.5368 18298.9552 41341.6888 20579.9238 18756.3267 12478.3432 12478.3432 28724.8295 22908.7651 36648.9564 39006.6342 14879.53 30031.7912 49591.6146 14805.9764 53035.2126 29645.5914 29944.7881 15553.9242 21194.3908 14943.0708 45551.6114 4768909 protease_serine_fungi Carbon Cycling Carbon degradation protein Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 10884.6066 3148.0673 32777.8068 15490.5184 9867.7963 10273.7345 6008.7207 6828.2512 13693.389 4471.972 6833.1736 2217.1884 197105712 linb Organic Remediation Pesticides related compound NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 16919.0315 27432.2567 46786.0637 17775.9188 7179.3471 83417.0563 3842.345 10950.4601 174402.5577 10954.6578 16620.5117 11498.235 9517.4146 9517.4146 5209.7471 15720.3379 12388.5462 6570.4038 12252.2138 8167.3295 31353.3247 6727.9582 26826.7193 6469.7593 51996.5428 289511.4277 12071.5911 5442.2297 8358.0076 17013.0847 3149.8337 5786.1786 383781312 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 178741.6726 111271.3339 39748.2686 18597.5348 39938.3053 47351.474 320404.032 164770.6348 274340.3042 121128.8112 122148.3844 4477715.2441 64032.8284 205329.0969 381466.764 139559.4218 139559.4218 62194.6713 279382.2544 159334.5791 202739.2546 875710.4664 76509.145 78489.4062 119397.8527 112893.3008 129969.3415 621467.2147 95419.0066 116794.6333 70309.295 126096.9856 110994.6523 91132.1998 275590.7571 50542706 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3778.5248 22759.5352 14245.5095 5073.0783 2074.9625 2074.9625 1024370.9199 6649.242 13892.0791 3878.5793 4012.557 10371.857 91807172 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 11008.4462 5971.0876 12370.818 10971.409 10544.3958 8808.0472 15765.0161 30573.2298 12123.1302 6984.6124 161099.2707 14551.6349 11528.2483 13644.9379 7646.8865 7646.8865 19658.9958 17894.1994 11345.0516 8361.4696 13730.1951 14892.9935 10571.6449 6340.4809 22393.9588 5923.0463 31499.3563 10918.6053 17387.7038 8396.8114 11237.2554 136732.6354 22059.1823 24100.8172 323319501 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 91839.4404 28960.9953 109729.797 52090.8776 108240.5656 73884.216 62966.2692 74578.6183 35056.1723 45887.7743 140468.5094 87291.6123 1107550.0426 59281.461 110078.8345 79042.7906 77608.7926 77608.7926 69821.3259 125916.5987 60194.7326 64289.2327 197927.8295 63701.7198 76181.0679 62298.2812 125312.0088 67684.0491 420307.2919 102836.7761 98462.1015 49441.1707 51758.9357 86889.9624 62316.6738 78567.809 258593072 ppx Phosphorus Polyphosphate degradation NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 33307.9303 30759.7059 14156.447 28593.2047 5714.1189 29290.8987 31404.2925 13039.4364 39638.1683 34193.5447 48397.3207 1042968.5852 25446.6101 97147.9251 59496.4804 32909.7502 32909.7502 26025.7394 56141.3569 28941.3317 75146.8948 49945.9905 45715.2667 27245.2375 16505.3295 46650.1046 36919.3935 111815.7999 25805.2975 39033.0886 27711.6416 25136.646 168518.6697 22757.378 56893.948 225416615 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 26778.1534 25666.6261 36082.9292 10157.7423 17203.9696 6154.7056 11545.4218 6547.0836 17394.0686 5756.9067 16681.2391 34148.6149 193213.7804 21101.6323 15821.2642 7637.7952 7293.2066 7293.2066 12800.5821 31082.224 13271.4299 13150.1233 22493.3446 9985.1936 8503.4826 8433.9825 15872.8338 9563.8074 34459.8679 18588.2062 16368.7424 8714.353 10487.7581 17919.7172 13304.3799 14192.5379 359786431 amyA Carbon Cycling Carbon degradation Starch Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 9003.2915 6046.8417 18378.5958 71034.5834 9524.1756 3748.926 15469.9994 8864.543 11830.2989 7981.677 11991.302 246528.6009 13645.4374 19374.8644 15752.4649 17483.8988 17483.8988 3460.7889 107941.3582 7837.0023 3820.1487 5424.2632 10681.5924 4400.2204 13399.2789 19536.5357 6149.8579 31374.1345 17005.7591 18673.8542 5982.7457 10960.1871 9521.9355 4998.9309 10538.5539 212003473 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 23135.1802 446027.9079 160865.6541 89904.8379 16107.764 2382.6948 4665.4452 3453.0331 6027.0331 6449.9193 185845.0393 12433.9571 7710.1053 31156.6745 9899.3351 9899.3351 4120.7571 9784.7189 8136.311 18147.4235 5418.437 11782.7958 6744.3753 4763.6779 23839.5897 3134.9747 13203.6748 12470.7872 12066.8962 6143.4452 6446.6323 4861.7311 3184.5232 12052.6919 293396595 nitro Organic Remediation Others NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 14596.9792 9235.2027 4851.7386 7429.3897 7034.1802 18772.7307 5513.6032 9420.0003 13084.7154 27215.0905 19942.3469 2168730.9056 13031.6378 27367.8658 15831.0791 26090.9388 26090.9388 6211.0119 26103.8597 10803.4531 7019.5412 25403.4447 37391.7445 14683.158 16253.828 16814.4816 7849.7118 19250.2813 25525.3525 45090.4391 9032.8518 26875.474 21979.2063 11508.2495 26962.0365 390426971 urec Nitrogen Ammonification NA Thiocystis violascens DSM 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 10800.1484 26712.5425 3547.356 2608.2901 5803.858 13384.1894 164477.7786 4848.6353 8448.11 4798.9014 8394.6999 8394.6999 3323.9094 8987.9261 5549.5858 8319.3994 8177.6296 6855.7686 3192.8426 4108.4048 3892.4143 11655.9174 9084.6894 10238.3627 3600.9456 4043.2295 24486.548 16888.874 196228359 pme Carbon Cycling Carbon degradation Pectin Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 7182.8135 11938.856 7400.2508 3758.7856 2206.7714 6084.4758 82250.2582 2555.0941 2555.0941 8722.825 4370.0761 4521.1557 6535.6594 5328.9022 4276.258 7334.3369 3137.2971 5648.2071 6022.8232 3633.0894 2896.7618 9831.2878 37726808 dsrB Sulfur sulfite reduction NA uncultured prokaryote 12730.6384 4964.9764 3304.0493 5491.6475 5082.316 91786.8605 8293.4085 6971.3148 7236.8296 7236.8296 3159.0963 8166.0445 6092.3555 4195.4928 2554.373 4390.1944 11582.5043 4125.3225 13068.1399 6915.0115 9314.1099 3491.5778 6190.3444 5577.4462 2843.8942 6594.555 223470338 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17677.8622 10180.304 22885.7228 25130.3663 15908.0388 18289.6324 17004.4138 6896.7103 20441.253 17700.8019 8742.4905 471717.5228 21956.3136 13940.9523 16812.3086 14428.5413 14428.5413 11919.1947 25777.2333 18683.3853 16311.8623 19349.5832 26350.2778 12166.7054 10494.0291 22800.1551 17370.6853 35426.6334 13416.3352 22369.1693 13180.0622 13657.2476 14439.5199 8831.2325 20914.1616 260420540 FBPase Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 27117.8042 15561.664 3661.9935 25986.584 9062.8849 7240.1497 11358.6413 13908.5688 16379.2217 24476.4662 17319.0372 187294.9492 12740.0242 11282.4018 12531.8359 18558.1966 18558.1966 12143.6904 22835.8857 11941.4994 36815.8723 22535.5237 23183.581 13505.7266 16047.5998 16889.1904 8354.7921 41395.2854 18056.1175 25512.0535 9279.3232 14305.4855 32447.088 11659.4572 12558.9776 350533755 B_lactamase_A Virulence Antibiotic resistance Degradation Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 43175.4047 18939.8397 500924.3689 43060.7383 454953.3139 8514.1742 33877.5537 31569.8346 23674.1788 24685.9454 32924.4452 31976.6813 640011.9015 42423.6367 34714.3545 24442.8556 22173.846 22173.846 21496.4735 63240.7248 25246.5602 155384.661 41975.6784 278870.1365 21261.7707 20702.6893 48217.912 20998.086 74262.7367 40004.0251 74223.9892 18690.449 29208.7649 22686.8751 20710.7949 39398.858 2980618 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermobacillus xylanilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus; 323259.1759 42250.4225 196695.7624 820150.9961 157390.6709 1902457.7627 247898.4727 572135.5894 120702.5683 248287.0263 281010.8165 273549.9884 4924116.1029 212048.8176 374559.087 408536.8682 329308.6842 329308.6842 206557.9894 243639.3653 117903.9439 295610.8714 302175.3733 220669.6289 109875.2043 110594.296 455911.5971 126162.3895 326956.5903 196164.3447 305119.8562 262484.6957 134120.6349 184733.6954 100144.2398 426765.571 354615663 xylanase Carbon Cycling Carbon degradation Hemicellulose Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 127092.2689 17840.3012 52627.0995 1199020.37 59686.4992 28239.9176 118858.5856 170945.3177 38454.9951 184567.982 254508.2877 216703.486 1459783.4486 117457.7346 109465.462 121286.7659 111431.8372 111431.8372 130898.2557 82616.9732 60220.0982 118687.2017 388889.4795 471602.613 192496.1045 41882.2907 86223.9974 147225.5569 452709.9828 163552.6844 152222.5769 58497.6478 96453.0705 60009.1684 86566.8406 205700.235 94449468 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 11259.2059 6446.2623 22284.0468 14960.5166 7209.4382 7258.5256 5646.7175 5720.7282 10093.0146 8158.4658 4341.5178 115817.1505 10168.2027 10184.5456 4461.5192 4461.5192 4453.6047 12570.4719 15312.3236 8429.4329 8047.6438 10566.026 5201.0825 4287.4027 13899.5779 6947.9012 18560.9917 18644.5828 11143.9255 4363.9658 6129.053 7606.5379 9136.3816 12721.265 55791922 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4982.9982 9462.3858 4337.1622 4066.2166 8547.5841 8447.9396 3574.8998 22617.1586 18537.0818 757731.8861 103202.646 14931.912 4334.1425 8323.8466 8323.8466 15287.9981 52848.6773 10822.213 8152.0688 23084.4796 3492.2858 7727.9016 6757.4592 28020.5953 20243.9608 19664.8963 16454.5729 2515.0979 2827.3914 6312.6865 2578.4126 4813.0893 110808292 dsrB Sulfur sulfite reduction NA uncultured Desulfotomaculum sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 67510.3057 5220.8059 80048.4426 4065.1885 3578.5992 19318.3555 43435.9642 12980.0596 26106.3523 135060.9533 5627.5074 15141.0569 147079.8636 27346.3925 27346.3925 5346.9966 39726.9838 7577.9269 17283.9284 7339.9048 23979.2672 3930.2403 8672.5761 11207.9318 6108.9369 13104.4385 15331.7611 12514.25 102536.8195 74382.0353 11217.7218 25148.707 34484.0423 385736914 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4983.1803 34735.0386 4661.7137 3286.7877 90376.2903 4231.1882 7676.1762 3583.4277 3583.4277 18053.7928 10588.5404 6122.8701 5505.4567 3188.2213 2857.9767 13441.9287 3625.4183 73602.8012 13347.095 10432.7646 3657.987 6101.8365 4731.9304 14701.9489 6420.6099 226182894 urec Nitrogen Ammonification NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 17671.4249 9125.4111 8898.0939 15501.8777 11133.6856 3881.157 3763.9665 11148.5689 7856.3736 5591.4305 158255.0249 8798.0897 12369.4741 7587.1101 7365.8244 7365.8244 7169.8439 18226.0917 8401.5348 20557.6071 19205.4933 10447.2521 6315.2602 6089.9151 10445.0815 14909.6061 26979.39 6344.2784 15002.8356 8393.5237 11102.0031 11182.1441 8593.3934 16726.0654 109290294 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 84254.7224 24537.9663 34224.3047 20194.619 41553.061 7448.9945 16028.44 41343.5531 23439.7152 55960.527 50822.0157 68590.1024 952770.0287 34480.09 59348.0081 50875.3797 38049.1903 38049.1903 97228.019 50287.9396 26083.8607 33557.1964 74344.096 33745.4739 64143.1818 41705.1885 42367.9585 140428.0662 101333.7246 69993.4061 64292.644 17494.2208 43020.7784 147636.9121 26493.8217 30149.7029 86749460 b_lactamase Virulence Antibiotic resistance Degradation Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10388.1741 9869.7749 6754.3472 22392.5693 6841.1485 13143.5946 31905.5681 2759.2232 9006.6656 14470.4372 8407.0618 127470.7189 9325.8636 14618.4694 36660.1835 9532.0468 9532.0468 4748.0378 24185.4571 13207.667 136643.6859 18540.6311 23876.81 8473.7981 11168.2856 33355.5383 30179.5453 24755.0037 18755.0857 12019.4497 13992.6939 10348.9487 8251.9995 6100.7902 16043.3479 333938751 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5301.8826 2977.9247 383636056 amyA Carbon Cycling Carbon degradation Starch Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 1096462.3036 27461.7605 258922.095 156667.3447 1096173.7719 191759.6706 33666.9049 159919.3815 145193.7919 161564.3194 323538.6933 143102.2012 113508.6679 280195.0755 285023.6558 278425.3188 276547.412 276547.412 149253.0623 120461.0634 146559.7463 103008.5965 422245.7154 190661.9722 97392.3228 113317.4377 139681.4354 97818.6935 680828.6213 224966.9696 176409.2251 61600.9413 131240.3767 149958.4003 122322.5541 230164.1943 291446987 pcpb Organic Remediation Herbicides related compound NA Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 22616.3033 59888.391 36493.5846 7299.454 545619.4668 14914.7684 10394.0772 5080.7209 17324.4048 8160.6358 193661.2821 6367.02 9250.4036 19535.3837 5981.8849 5981.8849 5329.6353 88500.012 24107.2856 75974.0344 51505.4286 11368.6562 8843.0763 9681.6555 14777.7041 7332.3181 27235.9299 37662.3454 31204.6086 15174.9499 7570.743 24797.0788 9707.4987 21362.1565 159128506 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus fumigatus A1163 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 305924.3591 12478.9415 41006.5399 61274.2568 109804.7656 90836.703 33143.2605 67498.5983 21985.1642 36374.3388 57128.1048 34718.7688 35089.4388 162016.1162 113708.4114 98535.3251 102865.9156 102865.9156 34550.0874 107577.602 45487.0213 43914.0269 123061.3517 602539.9326 41066.3613 54890.2144 59047.9376 52796.3535 379054.2039 88795.3854 72165.3555 241498.0533 53989.1744 90333.2019 50327.5829 57572.3077 291536054 ppx Phosphorus Polyphosphate degradation NA Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 4463.9288 17199.4915 4385.5223 12558.3934 5956.1164 4563.6756 7616.3404 3183.904 5453.0018 6915.6726 5774.874 5774.874 9850.8682 13776.6117 7298.7383 6160.5748 5275.3901 4150.2219 2878.4659 3090.5771 11204.6126 2710.6487 12564.2047 10195.9527 13016.1057 5058.9234 5686.29 9643.3202 2831.2655 147886276 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11210.9219 31082.4673 6752.4754 11688.9612 1934.6613 5396.1838 4152.1852 6660.3096 5184.9677 143072.6548 4655.1231 4625.6735 9413.9266 8241.8078 8241.8078 4511.6109 10271.9928 11441.9313 7505.8856 13880.3072 7685.1994 3675.1506 2997.3706 8181.0639 2788.5559 11594.7094 9277.5346 11530.9057 2807.9671 7813.2366 7303.7364 4409.6139 9616.2345 358448028 ppx Phosphorus Polyphosphate degradation NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 40441.0907 15492.814 12463.6662 135764.1457 27957.6807 22826.7876 15826.5269 37362.2032 63271.9607 26946.6555 22875.8524 306249.01 261545.2747 44974.7926 71926.7495 46740.79 46740.79 21207.2947 22825.3399 23276.972 140977.0365 67420.012 23811.5494 21793.2522 12760.9737 32249.8062 21269.7454 47123.2026 41395.7927 43035.3221 14512.756 64707.7729 28604.1206 15249.4501 25202.5644 259344781 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6765.6093 6694.0478 9258.4772 20276.1706 12133.42 2758.4265 6573.507 5067.1556 4071.2669 6287.8159 6859.0329 152447.7545 5349.0927 6208.8707 6951.4756 4572.7855 4572.7855 4234.7904 10016.5433 7958.1434 5821.6429 8376.3193 7466.3344 4056.8627 4870.3305 13717.3804 3434.7479 13542.9095 10623.5612 11294.0248 4659.9964 6377.8825 8338.5128 7566.8779 6043.9699 146410979 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 38542.2955 9216.7326 15797.6031 6513.7737 49697.053 76950.9465 40412.8369 25458.3793 84863.9739 1692429.6342 146331.9684 36784.8452 43936.3718 24919.7914 24919.7914 47923.1665 31800.1048 56368.1112 43564.8758 100615.4416 44406.3061 154702.777 42865.6707 80516.7526 39391.5212 71016.8231 32766.8194 49589.126 58770.888 36633.6075 32196.1389 39303.0213 69313.4782 42493191 tfdb Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. WZ-2003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 137797.7045 17998.2168 15038.0154 75119.6802 8233.0003 92727.7085 33750.3928 13758.0678 20449.4251 101576.1979 51126.7039 414060.7747 76198.125 33195.5396 40412.5728 30799.4563 30799.4563 21785.529 61144.6575 22608.5885 134774.6936 13691.7488 28404.7369 30646.5213 23288.8521 19425.2569 23879.0322 112227.9099 29244.3172 67161.2412 18387.146 43762.9142 47182.6637 25489.1626 72783.6479 89241914 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 27343.1578 26718.7471 18424.2832 51188.0255 18922.9231 6724.7463 15399.3472 7741.5513 12176.8506 8879.1982 13220.1071 279340.2777 15901.2316 20707.7669 61644.8013 25765.1124 25765.1124 10881.4056 51728.1348 17654.3439 164812.0213 36511.3827 11953.2434 15292.6139 16173.0205 40391.3529 40456.8658 134697.2107 38437.545 31649.04 13745.0837 20550.9264 36314.1319 16601.4897 16362.5465 375750564 cutinase Carbon Cycling Carbon degradation Cutin Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 491891.9012 390506.0556 470893.0094 1676948.1269 179512.1037 180344.0184 353686.7538 389953.9395 307638.3591 214437.0618 406957.2466 192410.1768 5484240.5871 536657.5748 490523.3974 929544.8542 290164.9239 290164.9239 244724.188 653822.7052 221266.2238 463017.0374 538198.2391 607808.3632 187929.9935 318002.1121 255629.9938 281992.2006 753106.4754 381885.9861 328128.7216 246586.4792 252503.9537 357016.4608 219894.6496 538292.0101 288347142 xylj Organic Remediation Aromatics BTEX and related aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 75149.568 11520.2769 103987.4567 20968.4787 41437.3888 12441.6585 637795.9051 38039.766 29851.8315 53635.0227 67487.696 128602.2182 362848.1658 50406.8852 45962.7432 64975.8613 85108.6415 85108.6415 28581.6389 51983.1008 51820.965 48298.1326 62178.1656 36465.3238 28054.6335 44494.7143 44064.9533 31297.3371 89710.7111 58173.8214 44125.4529 28123.0741 48854.8507 37223.7831 47687.4056 57487.5484 27657621 chne Organic Remediation Other Hydrocarbons NA Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 40576.1354 12112.5272 72149.0416 52899.5497 12367.4269 26075.3367 12906.8294 13048.2878 24151.6206 20407.8344 29334.0549 304755.5726 24434.3826 20815.9803 57248.221 110054.2388 110054.2388 10805.6079 53872.2788 17609.794 10863.8835 75707.5149 20249.1346 18082.1348 29756.966 46894.8479 28320.5967 453056.4103 32524.0582 32234.3467 10874.3607 50233.9946 23680.3808 47256.6667 83519.4266 70671639 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 10232.7429 4460.6318 6366.2452 4235.9927 359838165 pme Carbon Cycling Carbon degradation Pectin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 18486.3679 9642.5225 51590.1915 5401.4095 9424.292 150579.5441 14373.1365 22527.9318 12267.5536 237820.9051 19872.4161 21654.905 12909.5245 6609.3381 6609.3381 13383.1454 19400.7166 13808.7703 6599.1184 25593.0572 12386.8965 7675.951 24504.9125 24469.3121 50150.7067 30173.5707 21664.2872 18821.1232 12019.4694 20934.0285 13966.2379 6149.0301 15503.3129 310620604 atza Organic Remediation Herbicides related compound NA Megasphaera micronuciformis F0359 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera micronuciformis; 28729.7038 12826.0236 90562.2889 5111.9439 4254.2642 14075.7986 2198.8024 4207.2853 4892.7928 10747.5654 83579.4176 11093.7841 6005.1981 4111.0464 4111.0464 96022.2176 19591.778 12766.8149 9916.8759 39451.7982 8857.3483 7894.8525 7892.104 13527.5332 3401.6005 30425.9829 10897.0696 14529.7496 4671.4627 11389.8178 22943.6738 10650.1839 8885.8367 169867023 axe Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7181.605 12919.9521 12861.6668 32205.8345 537442.2937 4165.7436 2992.881 86067.4955 6592.7429 4144.1003 3465.7458 3465.7458 3574.1084 7647.8942 6013.5901 3548.7103 8976.73 6930.7518 11703.7462 5586.7375 11262.6688 3078.8669 3845.0702 3855.3781 2443.7394 119956897 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 14759.5557 50865.4387 18795.0915 206988.9368 13733.1122 13296.8223 4092.6635 11001.8503 18127.0481 58763.1144 595619.6625 13857.2789 40800.5827 22964.3688 19261.3453 19261.3453 22829.2235 24362.7446 47967.2506 18070.4504 146815.6274 27906.314 11236.5538 8916.5383 12000.5422 15475.436 29893.0318 15849.3896 17749.4244 8405.9477 13613.172 31154.3096 12845.5769 158083.7742 220930908 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 5040.674 85234.3947 4710.7781 62790.5816 4328.3402 2139.5826 2139.5826 256830691 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 34751.7107 7721.2254 7390.031 19216.4481 14163.1417 16088.8997 7863.2687 18436.4098 24175.3144 10121.7715 278456.6736 21133.1728 102863.0975 25789.1003 9371.2355 9371.2355 11647.4152 20205.9713 12703.521 31563.0895 29930.5062 14391.1747 12647.7805 10852.3259 28709.3897 39348.9846 33480.6249 21048.2295 28604.6029 8623.1832 20492.5975 14240.7915 16850.3476 20289.3194 302489703 amyA Carbon Cycling Carbon degradation Starch Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 10152.907 1831.647 2072.729 2519.2329 2782.3637 4558.0544 565737.287 3504.5424 5212.9808 20172.6469 2231.3341 2231.3341 7811.4166 6947.2165 4780.2506 6178.84 2485.7191 3300.5107 6204.8206 2381.061 11602.0349 64155.3498 6665.9005 2154.2216 4106.0952 12371.9387 2892.5957 227199501 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 31595.8044 27056.2076 26820.5249 20958.7014 6103.1862 18242.884 15982.244 7718.8366 14312.5298 35145.2795 15299.9557 356140.8442 22203.6905 19146.4881 27419.6103 21233.7242 21233.7242 9938.9608 34933.7628 17043.2779 28494.0718 48301.5992 27155.9165 11055.1838 14940.1459 33718.7306 19052.7583 70244.8898 15869.3846 31605.2509 11503.2145 13691.2565 18048.8819 14635.624 29084.869 53757033 arsc Metal Homeostasis Arsenic Detoxification Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 28287.0049 10974.3526 4835.7368 6122.2873 4929.5231 7472.1219 9719.8119 10533.529 8254.8221 9345.3645 62583.8956 4739.8269 27358.9582 7495.576 7495.576 7711.804 8248.7409 4121.1212 38057.6208 63444.1946 3628.7595 3442.0103 36193.1956 9961.4856 19428.4737 6292.7537 7406.7786 3922.3117 16831.5563 9432.4677 4607.5972 271965657 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 26209.643 31900.6021 7322.2955 31342.0394 6221.9451 17106.7414 13230.9242 64716.4982 14760.4157 31126.3856 71715.9962 117233.6389 18624.4273 14911.8115 58994.3487 6457.4024 6457.4024 12108.7941 58598.0512 8611.408 12254.1241 29136.8791 10416.7719 15819.9154 19754.356 23897.6541 66191.5265 36096.2029 35182.8396 22059.2082 32545.9164 12424.4665 22270.6258 10934.7236 8767.9975 82571043 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 16464.0397 28964.1146 4310.1746 5604.0351 64262.8357 12847.4121 5219.1653 127000.9583 9497.4713 11033.5997 9817.0908 6797.1207 6797.1207 5164.9827 18934.7842 7974.9524 16552.4052 13072.25 64129.1547 5904.8424 6360.1553 21848.9309 4851.0403 24090.6246 10824.4926 22183.2778 3900.9368 10617.5157 10521.859 5515.1057 44515.106 160917506 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23275.4983 19813.3951 71372.9022 16513.167 13019.2412 24598.2296 16540.021 11663.4689 16096.1735 15687.802 337815.6906 16690.8795 25639.5232 39553.6081 25998.0366 25998.0366 14389.3698 46958.3604 16801.6524 12981.0517 22051.7072 17891.4496 10315.34 11417.8467 29575.9786 16099.0616 29139.4093 23870.5281 32302.958 14870.7068 25867.5762 19480.4536 14849.4357 23491.1954 189340896 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 6275.3253 4286.6051 3363.0055 3891.3406 8056.7937 7590.7673 6032.8002 92587.6385 13249.2091 10053.7351 4528.27 4528.27 3757.425 14635.9992 9442.3292 5862.2055 10907.2675 4957.1206 4794.0376 4163.6657 8249.3064 5868.5502 11902.8596 13580.0292 6549.7985 6055.4315 9846.2278 5328.6551 5829.4005 8995.2352 239833715 xyla Carbon Cycling Carbon degradation Hemicellulose Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 12155.601 6718.6795 10345.5341 4976.423 8479.2485 4710.7901 10761.5017 5243.8004 6157.2258 7392.4382 122831.4718 7489.6822 7755.8321 9348.9371 3449.7882 3449.7882 7320.0489 16570.8071 10060.603 9466.1109 19275.7867 14951.8657 7302.5847 7035.2481 13357.9524 10020.5591 24025.8904 6324.575 8916.0395 7124.4545 16910.1294 7618.9296 5368.2412 11313.9048 311229554 arsc Metal Homeostasis Arsenic Detoxification Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5212.186 3344.3635 5236.4166 7932.1903 2861.9405 63371.0064 6726.6985 4791.2339 4003.21 4905.8723 2460.3331 9281.5014 2428.9958 12205.0661 3547.6569 5711.0481 1818.2833 3360.5472 5135.4495 5063.9673 94415004 terc Metal Homeostasis Tellurium Detoxification Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7227.9581 4729.5917 4386.849 3022.1276 2243.5458 3684.8481 7819.9087 10351.0991 152683.514 7556.4345 7196.3176 4654.1566 4654.1566 2978.5984 8883.9006 7162.4632 6085.2002 8336.8972 54860.5883 3363.878 5632.5596 8585.4444 3979.6521 12637.8306 12260.8331 8836.7568 7412.8497 6231.2675 7826.0547 4193.5439 8533.5508 226834711 xylanase Carbon Cycling Carbon degradation Hemicellulose Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 9750.5562 6710.4103 9043.7115 2567.8092 3604.1574 2527.6527 15485.9566 12718.5187 10157.8525 141832.0409 7186.9738 25679.258 22598.3197 2408.8791 2408.8791 4475.6923 12147.7757 7637.1092 799920.1993 11939.3115 7209.0042 4383.1802 6622.3038 8761.3573 4337.6029 14378.3151 11125.9378 21012.0728 4185.8226 6337.5734 5424.6163 6004.172 12286.8864 373854095 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 35344.0329 8005.2581 13012.0217 18610.093 25616.9454 200930.98 12090.8513 78837.8329 20541.3579 146812.1883 14510.2568 86774.9034 22565.4847 15735.378 15735.378 15936.187 17163.8441 14285.0765 12905.9376 30752.6168 21987.6591 14024.042 11326.1325 13943.8681 16246.2097 34530.3416 28239.9418 72990.0697 25171.0373 48915.8496 18511.6173 6294.6018 13103.2031 359460778 TIM Carbon Cycling Carbon fixation Calvin cycle Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 7046.4957 542649.7518 30216.0166 3334.2257 2986.3672 4187.962 4631.8166 2550.245 109466.1588 6588.5018 5495.8411 2095.5554 2095.5554 7761.7731 30035.2198 8232.6421 6021.656 5602.6101 7456.0543 4083.9004 10627.3919 11682.4294 2537.0376 15690.6163 7497.5536 4711.4747 19238.2175 6859.7664 4047.4361 5101.4742 363407673 amyA Carbon Cycling Carbon degradation Starch Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 10411.7959 11985.441 14209.3011 12079.2664 4789.5938 5817.7948 2356.7949 5182.8505 7325.2779 5343.9852 132977.1265 7384.1318 14404.5159 8562.4738 5378.4017 5378.4017 4618.5541 17095.6809 7524.3337 6127.5719 7548.6859 9527.8786 4293.5093 4386.8114 14701.1544 6427.3325 25302.1598 7216.1645 15648.8402 5809.4335 6733.3857 4491.4651 3446.6568 8325.5554 121998731 dsrB Sulfur sulfite reduction NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 58300.4628 5701.8226 6693.261 50740.3234 6188.6214 11685.7831 14973.7839 20582.923 18347.7207 23631.0565 6618.3519 463678.0639 12276.367 117083.6373 36840.5495 10646.5542 10646.5542 11202.306 25440.9152 11399.9317 13088.1857 13826.2457 10286.6405 9482.1973 24227.7195 11583.9342 22738.119 22525.5115 24080.118 25916.3333 7588.181 16180.2312 16360.7866 8336.8255 12708.1754 257323051 pec_Cdeg Carbon Cycling Carbon degradation Pectin Colletotrichum gloeosporioides superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 6315.6713 2260761.5257 620572.7567 4173.9589 4046.7666 5721.7336 2780.1487 77394.53 3598.4728 2271.1138 2271.1138 2569.1336 6176.9722 4231.409 4834.5957 2724.9918 6127.0895 2621.6984 5966.6006 3920.4041 3371.5226 58089.6304 149201106 nhh Organic Remediation Aromatics Nitoaromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 7764.5497 299134160 pgk Carbon Cycling Carbon fixation Calvin cycle Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 22259.9208 11417.8756 5513.4308 15771.7402 14900.9592 8803.9387 3784.2327 42237.1751 104071.8812 77821.8095 330071.5616 26507.3839 16318.3754 115754.8835 12141.8511 12141.8511 15458.2236 25865.5328 15190.3066 18102.5861 16867.4726 13170.1899 21470.0669 7358.9298 19124.0606 7305.8226 31007.6615 51810.6125 18424.433 13486.1495 31615.1999 13016.8397 10009.1821 17684.9774 377820672 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 306512.0747 17512.2609 140952.7562 917076.6443 104166.8245 35797.5397 122593.706 352905.9694 143531.4517 122959.2125 230723.0441 159057.616 3645077.5075 237634.8236 243893.5292 356616.9929 133905.5584 133905.5584 240776.7232 135260.6575 95197.5192 193391.044 248776.89 249938.2042 125711.2618 103296.1875 199607.0813 153647.2283 585596.8145 185737.5895 164298.7744 136214.3088 140080.4306 147788.7011 149171.6367 275606.0718 344212728 amyA Carbon Cycling Carbon degradation Starch Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 52145.8071 31869.4231 32720.2582 75869.4216 54921.1095 23069.4938 108311.2469 66481.0542 80972.1168 76732.7754 69410.3756 78156.7683 2735996.4074 84391.3177 154953.581 66457.7893 57982.0337 57982.0337 30940.3408 248232.6009 31135.5638 66567.9459 111868.0067 33341.8335 75908.8333 50875.1607 63062.3853 139681.7049 344393.7941 53254.7638 61728.6093 41009.6103 44481.7973 80381.9541 90116.7108 40409.6385 323387228 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5982.2258 4923.0489 11416.7208 4008.2472 2665.4962 3228.98 5641.1971 6156.6389 2522.3217 145239.0543 5162.8628 5457.2432 2533.8283 2533.8283 3797.0271 11146.4785 6625.4432 8129.9987 12779.0159 8493.3027 3130.4515 4962.2783 8821.4684 3914.5119 13201.1283 8905.0362 2337.1973 4425.0374 6201.7084 3451.6466 9675.7929 169235691 chitinase Carbon Cycling Carbon degradation Chitin Halobacterium salinarum R1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 16532.0074 12945.8617 2675.1198 4331.8322 2996.8584 4340.497 9558.167 4590.5982 157971.3305 30174.3229 5449.1922 7381.1556 7830.6616 7830.6616 8719.9977 48661.9519 11514.7437 22185.2709 116835.783 10045.2693 15163.0136 27221.5789 7786.8927 11370.1727 31976.44 12038.7996 7933.7366 8530.8044 10736.2269 7020.542 15193.2354 338765580 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6470.9683 30813.1404 13340.4669 14863.0065 3558.6144 3582.4162 95627.3281 6305.182 3862.395 2451.4011 2451.4011 10376.5325 6614.8986 3963.6293 6072.6918 4275.0516 2107.6049 2977.2825 5611.9993 2887.0819 11046.459 6407.7679 13410.6989 2461.391 5752.3278 3842.8802 2314.3381 14651.9704 6066626 linc Organic Remediation Pesticides related compound NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 5011.3551 99504.4801 32638.0022 9612.1239 2713.4867 3872.0863 10955.6201 3214.2793 7082.5164 3732.7 143657.8373 9148.2508 8005.0828 13830.9981 8381.3382 8381.3382 2942.802 5585.1044 8112.4918 8860.6992 4813.0781 13086.8716 4767.1997 12957.1025 9184.3829 15761.0833 5002.2313 5228.1892 3778.9367 2628.61 377570755 cdh Carbon Cycling Carbon degradation Terpenes Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 7273.957 4519.5956 7323.0852 19178.4533 6735.8658 16335.2248 26940.0469 5749.0856 7542.4923 18263.9023 476103.3373 16231.2824 21135.0265 62792.5493 27964.88 27964.88 5779.2399 9885.9679 11107.1441 13322.1063 8815.1899 3757.6604 5567.4973 18789.0005 4192.7631 22913.0643 9547.7226 12219.0549 5541.63 7232.4167 7740.5895 3684.6985 7703.1391 73541279 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 25004.9834 11320.5555 13902.4658 41808.4114 6343.7726 27390.4715 7596.2588 17906.2672 14847.9215 110902.6633 10913.972 13399.1277 34794.7809 12482.5704 12482.5704 13273.3293 53162.3341 10950.0764 31261.1588 16256.6891 6667.0761 10399.9554 34205.0872 18012.6483 59401.1047 94394.906 16837.977 33768.6799 71334.8264 24226.1073 19118.7328 16760.3085 23361.5537 149201938 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 60258.5547 16506.0026 48945.5661 49406.7887 119518.5583 42840.136 122400.0532 28935.6722 22611.5687 32963.6969 70907.6789 42615.7925 1044111.3219 96708.3413 84704.2212 99868.6791 65019.1019 65019.1019 64943.5806 66602.6592 42643.6438 43458.5799 79229.6456 77552.2017 30269.8402 36398.8512 76740.6375 28210.2103 166089.4535 55951.1719 59786.6347 26064.3337 41390.9707 42965.4194 28222.0411 37410.5 319653150 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5560.1374 22920.0189 6137.3457 12750.1718 2864.5083 4576.5395 5649.5348 6532.7851 3047.9327 75027.474 5203.952 5465.7644 7342.1539 2667.8726 2667.8726 4012.4431 9651.8922 6068.405 8224.9679 10899.8056 4596.2638 3349.0172 3777.4526 9579.0827 4189.3112 13268.4365 11533.9144 7226.7458 4584.2826 34592.4685 4117.5206 4514.3828 6599.0261 83840945 soxY Sulfur Sulfur Oxidation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 19794.5043 5824.8471 17251.1197 11659.7834 10257.3769 6260.5635 11444.3905 16476.4586 10035.3725 297235.8671 15212.1988 15664.45 9353.927 7313.9773 7313.9773 9784.0206 21624.9913 16849.0337 17511.1061 20040.1571 9695.0166 6678.5216 7056.2733 16892.9824 6864.1145 31399.601 15962.8679 23000.3473 9594.1407 10595.8383 12047.6751 12029.8495 17584.3858 260621399 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 5047.3609 4903.0528 4219.0536 3484.6805 3989.4871 6307.1923 3051.6874 125187.7643 7129.0823 6159.6193 4476.7058 2967.3454 2967.3454 3871.9277 9474.968 5312.1903 4658.936 6611.8357 6976.4645 3784.0625 3538.5816 10534.5529 2656.325 9912.8121 10943.9374 9759.5881 3721.0379 3295.3376 5192.5765 2966.7136 7695.818 374390070 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 4804.4453 8420.4811 3723.136 22528.7446 18903.5406 6769.4217 10020.5575 3798.418 164768.448 15009.6669 14116.4953 6535.0404 4667.3218 4667.3218 2798.7359 12495.6185 8296.4355 8059.4201 14190.7168 7601.6552 2980.6756 5354.3369 10932.1352 3511.2754 18249.9628 8277.3131 10749.1134 6244.2202 5554.6791 5460.0205 4611.8729 9587.9725 268638397 alkb Organic Remediation Other Hydrocarbons NA Gordonia sp. CC-S5a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 50591.6508 53506.6699 14463.4769 27483.6329 29614.2881 26996.4945 67582.3795 40196.7503 26636.4329 36916.5374 31448.6009 1772394.6559 23801.9878 43200.4858 83382.7394 32956.5698 32956.5698 29042.9485 63606.0633 35150.5908 43881.2522 90615.6483 34813.1444 29129.9314 44860.9458 34139.9211 20150.4289 93738.262 99293.471 76188.4613 36281.1389 32939.4888 74503.455 59744.4844 100133.6187 294084157 bphc Organic Remediation Aromatics Polycyclic aromatics Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 6119.3146 7901.0361 25655.299 4984.4094 7526.4051 10627.0916 180990.8251 6880.6939 79737.907 8631.6877 12250.3229 84269.719 3291.1721 10506.1223 9860.9605 4622.4175 11510.8843 17502.9768 7082.4682 5987.3485 7034.6638 9687.0305 25704.6774 13571.6853 12368.8203 6421.3483 8303.5955 23481.4627 7022.1512 7677.7656 296817771 pcpe Organic Remediation Herbicides related compound NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 18952.5955 37799.2619 4013.2068 6719.9541 2190.6081 6451.9872 6295.4084 4115.8279 4885.3656 8551.834 4152.422 3358.7371 3358.7371 3112.9211 12945.5437 4710.6104 16390.4798 5836.4416 13976.2263 5906.5286 3990.7865 27020.3352 12768.0701 6419.2668 3774.0574 5865.4617 4880.5242 5105.0012 5631.8465 385677876 catechol_b Organic Remediation Aromatics Other aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 25573.7178 25810.1179 26016.742 41208.1097 5498.9298 14679.7794 16247.8225 11154.9081 25657.7885 22263.9365 13853.5259 425851.0755 27800.6742 22915.4788 12729.2096 10379.1178 10379.1178 18682.1076 26458.8604 18314.595 26634.979 35204.7223 30314.9326 11511.165 11047.105 29924.507 12043.7143 44455.7545 26002.6673 32600.2513 12637.039 13162.6664 21739.7753 12776.2981 35683.8584 375103512 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 23134.1473 31582.1611 19271.7147 28206.4066 6518.8587 12707.0478 18458.8227 14365.5549 11933.6085 20123.424 16810.3717 428386.956 40357.6239 24797.8166 15165.9473 14065.4664 14065.4664 11772.173 34177.7138 22353.1256 15411.9222 38770.0831 36495.0597 13052.5281 37346.4806 33913.3906 14741.9807 70652.9901 29641.5413 26354.4749 11662.1174 18005.7601 20511.6768 12015.3243 65190.287 377535400 gdh Nitrogen Ammonification NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 324344.6491 66416.5442 859534.7246 137227.7692 721087.8429 100522.1113 286223.1925 296275.8149 145511.1599 137351.2068 137573.6122 289464.3959 4372334.8029 213179.9157 358760.059 283271.7853 170549.7944 170549.7944 196311.9372 253856.9647 137649.1913 300186.0792 175994.9014 417988.2846 69128.1033 30212.9881 179306.8223 114550.3252 344295.1685 148098.9336 244675.1763 105267.4137 124233.1424 198991.9762 167096.7214 219553.9831 126732427 tktA Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 5452.277 67921.6266 276949.8766 5461.8233 12877.8862 12157.4086 10445.9084 19506.5128 8035.5828 9671.3101 17072.5048 21346.898 244889.7916 16599.2297 23974.3813 38487.5439 7685.3791 7685.3791 13187.3642 39763.4507 11798.22 11662.9997 31152.0309 19724.6267 8344.4736 12193.1731 14930.5249 23174.2823 34571.064 28370.7101 34105.0606 17739.4295 23080.5335 10239.666 67587.2374 34460.266 229784999 inulinase Carbon Cycling Carbon degradation Inulin Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 10792.5566 9633.5248 14120.7845 6187.1572 6686.9538 3561.4078 3847.46 9943.108 7907.3994 5942.771 119193.5146 6390.4981 11290.9679 7064.1192 3970.067 3970.067 5846.5223 12229.1735 8046.7056 4746.2507 12808.2676 9260.5641 4059.7267 4047.9038 13705.7696 8684.3408 17673.7049 9225.3974 14385.0419 3064.6352 5352.6215 5320.7829 4420.4646 27617.7937 146192974 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 34415.5673 40658.7853 59344.0499 63502.2943 23680.8679 29547.7807 92982.1992 13486.7897 20356.1556 25929.1837 25825.8919 527887.818 68418.5769 92431.4721 60156.4501 24153.6415 24153.6415 22653.5289 41155.6767 25162.903 24227.9247 49657.6968 36970.4792 17035.8056 21179.0166 52121.2026 24957.0646 72493.5158 57394.2934 41983.0934 67102.494 28914.7365 20651.3307 15292.3265 70497.0783 237718620 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 14494.8683 10689.1029 3194.046 19369.8052 15342.3705 4901.774 12435.0204 11512.6276 86829.4303 6031.0004 8369.0344 19959.9041 7728.7647 7728.7647 4918.8798 29712.0209 11999.6488 40560.2308 10928.7732 5148.1289 3813.0347 12977.6469 14563.6061 12205.5664 42557.3264 12836.1086 13226.629 5855.3755 6453.3034 11042.2234 3850.5105 45384.295 156232561 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 79802.892 379020.0161 41437.0328 63544.2643 125079.7317 40308.5273 88075.2188 127412.6415 30822.9038 99669.4086 55871.4905 53423.0709 1896155.5086 75800.3837 108889.1758 150256.4293 74638.0331 74638.0331 74500.89 87956.0881 60610.0767 88468.1879 94669.7238 83497.6493 42312.6675 50415.4195 129705.7686 66829.4448 138897.7364 99975.9705 109214.091 57232.3737 94522.9448 85207.2861 40803.5744 72563.4835 308226467 terc Metal Homeostasis Tellurium Detoxification Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 56429.7381 24884.4468 47681.9372 44806.618 19745.3541 25061.5265 35369.7878 58249.5717 39506.1874 131470.2775 65922.0856 99865.1678 1343791.6664 58185.4597 60346.5259 76497.9102 101180.2466 101180.2466 35768.9652 71016.3596 45876.275 74433.7597 51023.0393 47576.8305 33058.3808 125266.6115 55742.8711 86308.8919 130093.8479 64835.7451 62025.9235 27764.1807 39918.5127 45723.5186 32939.2868 62659.4056 294674256 rgl Carbon Cycling Carbon degradation Pectin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 9373.1603 2110.5182 322433847 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 26752.8111 21572.7188 231453.9097 47051.3716 4223.2155 50369.477 11248.6472 28953.8541 9237.3414 402627.7275 13971.0854 19186.7531 34581.9673 166896.903 166896.903 13624.4295 16084.8064 15446.4506 5462.2537 4984.293 4199.2312 3676.474 10876.1637 53437.0475 4768.5913 28308.8071 36925.4461 29018.7952 15084.3601 10366.7402 18017.1703 6216.2018 333387834 amyA Carbon Cycling Carbon degradation Starch Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 6857.2134 5952.2675 6390.0775 8752.5267 1808.5008 3624.7334 129917.7469 5094.5105 141895.7761 10882.1782 5849.3753 9423.3558 7653.583 7653.583 6632.8053 9024.7872 3532.8131 7205.5369 8626.5416 4600.3236 8708.5979 7340.3342 6706.4153 7110.3223 7903.6567 7383.6683 19028.1691 7364.6618 11284.5963 7638.7652 330469188 terc Metal Homeostasis Tellurium Detoxification Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 7254.5331 4779.6624 10987.5703 2357.2053 2872.6251 67209.667 168593.8246 5420.9584 6604.9137 4382.2223 4382.2223 9827.6929 5068.7503 13073.4155 5161.7825 6307.5532 2702.4558 5096.9445 5985.9236 2131.7592 11362.4595 4876.4369 7770.0395 2573.0186 3643.6197 4272.6163 2510.6132 8244.6363 90337524 soxY Sulfur Sulfur Oxidation NA Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 4545.7721 3688.9892 4232.5533 5902.6817 3564.6981 62018.9259 4849.5768 1931.4714 1931.4714 2841.79 7142.8236 3641.5586 4071.0296 4605.2418 6162.4454 5396.9727 2116.5106 7339.5922 3760.5141 5286.2002 2598.3439 4136.868 3541.9422 2761.0189 4756.0218 45272455 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5376.3603 10798.8731 2836.494 2656.9819 3242.2238 5656.643 2842.9422 103210.2639 6275.6112 6926.8527 4505.6997 3581.8513 10717.5118 4318.1345 5845.1609 10278.2579 5615.4675 15673.8489 4910.7439 5493.2368 3717.5514 28604.4849 5416.793 5450.2589 3605.3614 5076.1886 10529.6213 6301.4966 383355847 chitinase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 306 str. F0472 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 306; 6361.1492 5898.3901 3736.7482 1969.2276 2334.6695 4672.5028 9834.4992 2508.5819 66592.5364 5273.7243 7238.4526 2123.496 2123.496 5544.6454 8373.4082 6521.0903 5654.1667 7120.8957 5737.3527 3071.3934 7502.3278 2000.0065 9791.406 5019.1283 22074.5187 2812.9611 3135.4305 5128.5145 3275.1816 5966.3394 146403708 soxY Sulfur Sulfur Oxidation NA Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 15347.0111 31896.2682 11519.1401 11039.3988 16398.5913 5625.5483 8635.2757 11411.1386 5882.4197 7610.5549 3504.7059 74714.9426 5575.1025 8996.3732 6249.27 5400.0784 5400.0784 9302.5646 14245.0736 9607.8022 9380.5933 16820.0894 10361.659 5093.4665 7591.4 10576.8415 4051.0734 15449.7868 9296.6964 18552.2351 9380.9947 147263.3235 16868.8784 4163.1261 8441.8352 336426418 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4417.3623 7883.1566 13077.5445 43529.5237 4253.9449 73514.0431 8135.2321 4422.0923 5601.1152 13166.5362 65598.5801 4325.8586 5463.1915 6901.9237 39778.2338 8280.6583 77568.2886 29509.1955 8809.7896 164032.3941 3772.1554 13482.5573 9365.1907 12901.6083 12817.5676 8114.9365 12841.3175 13035.1805 6733.4224 5858.242 927353.936 167355733 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 9598.3445 14456.8598 3306.5689 4415.6392 4811.6077 4232.4377 6333.3009 3778.9486 4559.1217 300390374 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9454.0971 7338.8689 3416.9179 20161.9174 23273.8159 52882.3704 5350.102 84456.6899 5390.9686 6175.0216 20637.0328 20637.0328 7304.4924 7642.9151 4662.6575 4719.3634 33041.5707 4159.5383 4409.244 7835.5922 20348.1856 12866.5471 11306.8837 12650.826 7683.6323 6682.546 6737.2358 9758.4488 299525670 arsc Metal Homeostasis Arsenic Detoxification Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11828.582 39165.7651 5654.7745 3641.0452 5924.8459 2498.2795 5944.8115 5950.1719 5528.8546 141771.876 10649.5225 9388.0558 4764.5884 6690.8981 6690.8981 6575.5527 19741.5212 15240.9435 6435.0552 16872.9259 14933.636 4998.5781 4826.8065 9770.3489 7836.22 27616.3518 5914.7018 9366.8468 7597.9976 14622.9241 12774.8532 4258.8225 8089.851 83972412 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 16484.6377 11907.2925 2310.8279 28992.2716 42858.6821 14182.4676 28459.1275 17388.8201 188878.2196 7580.8601 7380.3368 13479.436 30767.7201 30767.7201 11242.0926 32352.1617 15272.3931 8953.6452 25094.8555 53824.2922 13232.297 146643.2901 14632.4767 9464.3579 31805.4317 41699.8429 24282.6363 17326.1211 20172.1737 16500.7564 23688.5209 17296.1855 378784200 pcag Organic Remediation Aromatics Other aromatics Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 284284.5123 47173.7779 98590.7786 45248.5746 42142.9243 16178.8407 81323.9914 61316.9348 130587.0293 135090.6275 93401.3099 352506.1452 23291.9544 64134.5527 44378.7806 81332.981 81332.981 43319.3699 109920.6277 25623.3861 51969.4728 35622.2573 40038.0773 30006.8301 37191.0907 38592.6958 41746.3474 104605.3758 33102.8801 136332.0867 15435.7914 38218.709 53297.8879 34090.4852 101440.2516 399539105 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 64837.6372 45482.2043 13483.0011 23449.2037 5658.5506 15113.7781 209685.3559 7468.2158 8177.8733 38398.0333 16016.0468 187328.742 20659.2748 16687.2005 9969.4446 8615.6435 8615.6435 8164.5808 26756.2541 17338.0679 14127.585 30123.5488 25177.4136 9784.0303 11701.8746 37783.9447 36866.4678 32497.1128 49720.776 25351.5004 22723.4479 14452.2565 13639.2828 8339.4306 95938.2271 149184721 B_lactamase_A Virulence Antibiotic resistance Degradation Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 5316.768 7808.856 4306.3084 3374.6387 5193.4566 3749.2864 139541.0444 3848.6584 34752.9172 4119.377 4119.377 7728.3008 3456.0696 4031.3115 2127.8663 4581.5456 10154.7734 3098.9693 1973.7689 151423609 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 11688.1152 30704.0668 4783.812 31096.6256 10156.6821 4321.1231 9315.16 9370.7407 10184.9444 119525.5402 14083.9567 10434.7613 25566.9482 12214.1746 12214.1746 10247.2056 17739.6872 12710.0154 13006.7147 12425.5782 4040.7116 5816.1163 6314.2483 11389.6068 9358.9359 20326.1994 24368.3972 14703.3456 9004.101 10631.8144 17847.0484 6766.4885 15807.3807 344940187 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 8876.6803 13555.7966 3682.4703 23376.0478 7458.5751 3707.7447 6021.7007 9712.5949 5482.5484 10928.7931 16581.818 16581.818 5787.1053 8287.1617 5695.396 8454.1333 11217.603 3931.1477 2722.4832 5633.3652 8015.3237 5861.7356 10055.9178 5432.0626 8117.0005 3771.8034 6918.648 15934.5118 4373.8507 4903.5696 109452489 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3794.5925 6524.7997 7247.5916 5231.8933 2703.51 4408.3419 2894.3579 3128.8812 15387.2766 3301.5105 80556.0017 5154.2316 10293.7169 5333.2747 7525.964 7525.964 5448.3904 12432.7649 5710.5475 6867.2335 4409.356 5168.416 2876.6374 3716.2447 20359.1834 3364.2198 38361.3259 4721.1967 8738.7583 5970.4923 5476.5993 6875.0044 4289.0482 5352.6652 377816547 arsc Metal Homeostasis Arsenic Detoxification Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 71604.6994 38710.5218 545955.3766 42288.6509 130959.9817 44174.1741 112850.5688 57408.2504 57016.1793 95905.132 128068.7286 101887.7823 3222931.1449 160132.5735 76532.4962 111603.2138 55612.0943 55612.0943 38510.8332 129203.3989 56597.5621 211807.1239 77918.3156 166130.9079 63610.5776 43847.9295 420028.1769 46337.4112 177978.3993 77878.1969 96266.8629 42460.6657 70450.1524 60578.6823 38228.9568 71508.6549 359313116 nirb Nitrogen Assimilatory N reduction NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 3962.8105 6799.268 6816.8111 9389.8476 11425.8235 10875.7 6232.6157 3572.0873 73979.7687 30027.9707 9721.9194 4745.4653 3527.4657 3527.4657 4321.8358 8430.2521 4202.8378 11496.7018 6558.7989 2480.8131 4698.4518 13242.6297 2139.2798 58154.6424 6092.7717 16143.8605 3624.0623 3675.9145 3726.2792 3924.4287 111017540 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 14556.9549 20984.768 15074.6742 25929.5265 20534.567 5933.7765 156900.6929 7530.6287 12576.0502 11001.1722 207991.3621 14103.6874 14213.3406 10677.2084 11279.4805 11279.4805 9677.9045 27913.1353 16129.3827 10720.8429 41343.0401 10938.13 13281.8934 23393.8864 20748.9493 10059.4304 31460.9527 25738.3813 16227.5786 5336.2142 14957.1454 17277.3053 8247.9758 29623.1324 91186102 ppx Phosphorus Polyphosphate degradation NA Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 12076.6482 10529.8283 9304.3582 6285.1006 35720.2587 4275.5909 13756.7435 28340.6864 4891.3462 382508.7746 15760.4108 14444.641 7556.1912 7942.6882 7942.6882 11464.7102 23558.4008 12074.9824 18355.6237 17535.3029 14853.5172 5294.5152 8483.7752 17953.5591 6014.3827 27575.4595 8826.5248 15564.1619 5145.5384 8903.3902 9370.7666 5566.7007 17441.6339 407748426 phn Organic Remediation Herbicides related compound NA Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 7238.0957 6643.9965 16631.8239 23772.5324 11687.299 3150.7424 7510.5528 2228.5772 12106.9066 10742.7993 11139.0923 146958.8892 17372.9117 13300.2888 13537.6295 9628.9862 9628.9862 7172.1314 15408.9947 344420.3584 8223.7777 9479.843 15576.4395 7163.7525 15587.0215 6225.4938 23348.9666 8042.0715 24221.05 5624.2484 6997.7896 7633.4293 5955.0005 10470.2936 320094325 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 5113.0924 2759.4273 3000.6354 4554.5972 9205.2016 3339.1981 3339.1981 6495.5886 5365.0821 2315.1932 6042.7104 9768.3972 2445.6931 2318.5998 395010828 catb Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4879.2012 21132.2823 6416.7315 14991.8902 6062.3776 4578.1126 7566.417 7790.4292 7585.5232 9873.3545 90473.2883 6167.443 7050.1499 7325.8097 4348.3727 4348.3727 9315.4501 7424.0547 2950.7459 6102.3633 6980.5277 4504.7147 3802.8227 6642.6527 3745.5231 10656.9107 5702.0104 6956.0395 7504.847 9222.4436 9250.348 7972.8332 140339.7013 270345156 RgaE Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4517.1677 12357.0263 3615.5924 2200.1486 3032.1713 5256.8211 5728.0301 2711.5603 218916.2272 6003.5213 7275.1427 7162.3707 3973.0914 3973.0914 3237.5909 10507.4371 5234.4435 4510.4787 8582.0063 6463.6678 5065.5642 3067.0857 8378.7807 2444.5653 13695.901 5963.4044 8865.3454 3381.5543 4312.3392 3894.2214 3031.7681 12984.2459 333396403 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 5094.4835 8500.201 5859.7042 5945.6171 4406.2042 5672.6414 5231.9117 4242.523 123325.5323 7116.6768 5224.4271 2553.8363 2553.8363 3001.8579 10112.2338 6680.8362 8373.8279 10925.9781 6537.6248 3008.0606 3805.7808 10323.1173 3607.9299 12554.7405 8322.1896 7786.5333 3803.4029 4372.1681 4671.5623 3440.6983 10531.6692 371951379 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 93530.9275 14066.6212 20550.5999 12113.329 16098.2856 11917.9787 17291.099 19116.7916 10337.0867 20128.9722 32362.2792 18125.2421 545845.1174 23378.1873 37590.0838 32888.2777 22484.3024 22484.3024 16578.3382 61233.8655 34791.3766 34087.7805 51987.0839 40987.4234 19419.0688 15297.6552 59891.4849 14056.4867 71232.3644 44889.5002 44441.1481 11653.505 34195.5788 31703.1868 13197.638 33324.5127 365273221 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 26545.7547 15403.6768 14366.7901 16395.3221 15083.6783 6256.0165 13267.6664 7961.0033 12531.878 61065.7815 61253.0317 265043.4446 21410.5332 20558.2242 43308.3895 34828.8134 34828.8134 9349.0654 24800.7012 11530.5521 25320.6338 18645.458 17187.1364 12885.2509 16163.9748 20678.5864 8781.8088 31451.3071 19842.1057 35247.276 19572.626 11278.7784 13000.5125 16095.1594 28653.262 111017380 oxdb Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 56873.0946 240532.4511 50633.8322 68596.9135 15722.9879 21099.5221 74210.6871 42487.1793 50210.6339 160460.4614 56708.4277 48800.2506 997451.2272 51425.2348 56507.656 33546.6872 58191.5087 58191.5087 51526.8096 99419.1819 45176.0039 62493.7952 75298.7721 91067.6661 91354.0419 29995.4334 51123.1887 285882.9175 125961.5447 60728.0296 58033.0648 55806.9241 44631.7298 61563.7631 63226.9066 51522.2714 254474155 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 19428.6043 10241.8834 13896.9952 11388.0324 10086.4834 14409.9569 6960.5462 8082.0992 11813.2805 5073.221 221281.6854 13247.6282 12659.0402 7240.717 6483.7055 6483.7055 10404.0216 20062.6326 10866.6828 20084.5825 22876.6613 24082.0869 6550.3032 6553.3842 13849.3681 6444.6801 33806.4528 10705.5573 17640.7511 7266.1513 12433.6662 12340.6692 10763.5018 23557.7272 361058095 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 5175.573 4048.6649 6754.8641 4136.6619 4546.7091 75991.477 4109.5714 8342.6555 2770.8577 2770.8577 2726.3387 6352.2307 3723.6587 7057.6326 9109.7584 4086.9411 2919.7844 2173.7216 3786.6998 1717.0606 5390.7901 8613.1916 2120.8816 37954312 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11232.8491 7960.9487 7725.1103 6113.8103 3718.4378 5783.8744 8411.7229 3822.772 207141.8001 8696.7848 14718.8371 5918.9373 3061.7467 3061.7467 5605.2786 15835.3449 8011.8093 13110.8575 12662.1995 12275.0417 3243.1445 5953.6871 11164.0874 3510.7756 24874.6426 10055.9522 10985.2725 3448.0839 5010.8662 6140.771 3935.7482 11712.4234 167654949 amyA Carbon Cycling Carbon degradation Starch Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 8439.3774 8166.7127 5265.8643 5754.813 4032.8287 2283.0427 107219.7643 6715.9393 7095.0997 4559.2707 2852.7386 2852.7386 4210.7201 12877.7335 8905.2221 7214.4764 8024.0796 9099.7462 4122.1144 4272.9097 9627.7212 3096.3856 25753.3205 5268.7943 11703.4897 3510.4258 4736.3105 5032.0639 3871.8168 12152.9532 377526977 catechol_b Organic Remediation Aromatics Other aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 46446.0905 20213.1385 49787.8187 71471.1466 65891.4528 22076.7892 33841.68 34918.9337 19652.6183 28411.4879 38833.6277 23491.1114 796027.9725 40046.7082 45360.4736 66134.0474 35660.7376 35660.7376 23199.805 42586.8061 70027.8998 1212999.3448 74959.2273 53976.8901 21007.0046 35797.4802 55172.2923 18809.604 70442.3254 58942.0609 54555.4695 23298.4763 47752.0569 31446.5314 21239.9155 2109097.2856 302582140 TIM Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 22231.2505 346999.3256 14746.6137 13496.7774 11284.1124 12201.6608 15505.831 11929.6297 17028.5819 22840.4283 17528.279 421792.2918 22339.1066 97880.0021 15118.6832 15087.8045 15087.8045 20536.3777 35886.7293 26116.8575 23323.4693 44224.4579 26948.7224 14904.3845 14244.4498 29612.3753 13605.1035 36155.8411 19034.6193 34654.2109 12450.0641 14480.9302 30873.0961 12646.5467 81094.4953 359834822 pcag Organic Remediation Aromatics Other aromatics Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 84936.8951 30893.0738 25774.2005 38161.9768 55820.702 18508.3809 48541.6597 21220.1805 44656.8582 125309.49 75423.8371 484672.3823 30426.4772 30890.1899 90239.1582 203957.2909 203957.2909 19700.992 63901.4471 33385.5239 155608.1202 48799.5206 16665.7371 33696.4641 32580.6335 87035.0016 61311.7585 121277.409 70188.9774 52069.7506 49225.3348 41336.1666 35712.83 21581.6632 245388.6584 110639751 nbac Organic Remediation Aromatics Nitoaromatics Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 67808.6129 35060.8554 24287.049 63778.2031 13452.205 29728.3812 75531.4116 8634.0972 24966.006 51562.7753 27114.6164 972967.417 51980.3793 36150.8752 28785.8447 25028.8045 25028.8045 14728.6094 61380.5826 45454.8735 28504.8018 182196.1061 58866.7316 14787.7737 25803.2047 38652.0142 24096.4808 85729.7742 46002.7659 40567.4109 26652.0366 32877.6185 41439.0401 25801.2148 25629.1008 10187455 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 16535.3965 16105.867 32154.8767 5537.8931 21663.0378 9699.5523 6610.2482 33349.2951 10003.6889 11992.1855 15182.8361 405868.3187 17612.4803 22065.5505 13448.3081 10323.3356 10323.3356 16340.5853 16480.9295 11530.9199 27850.5225 16828.1773 17767.6731 9510.5001 16853.0678 19073.4023 29217.8922 36220.4522 50370.0007 47372.8728 13696.7573 10717.8886 12590.8923 7665.8343 8110.083 296093581 pcag Organic Remediation Aromatics Other aromatics Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 14073.6062 30081.4286 23493.6447 126526.5796 17998.7043 7808.0966 11297.6858 3892.8037 8864.482 15578.7784 9722.6096 241280.1862 15723.4373 31159.6995 16807.841 33019.1207 33019.1207 10937.423 20266.7093 16998.132 8565.0911 19338.1187 25113.349 8292.6084 10199.7554 18747.1672 5503.9177 32158.5026 24309.0977 18952.1773 10552.6742 10737.0426 9588.079 6297.3051 16815.7615 27380885 sqr Sulfur Sulfide Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 12351.0104 6562.9891 45526.9444 10913.2109 12641.2671 189088.2055 23912.2849 5914.275 27303.8866 13228.6866 365466.0707 58677.5339 69038.0313 44372.8148 11801.5538 11801.5538 16851.5417 27097.3617 20272.7722 166765.6841 18646.2833 11474.1736 10706.8397 35166.3155 80281.5392 9947.8635 30056.5739 24141.6186 35021.8152 21715.3977 18655.5742 25814.8048 10779.2524 6871.8284 294884135 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA73_4W superkingdom:Bacteria; 7697.2022 10354.5289 38243.7938 13705.4281 2844.7123 10149.5152 11088.7428 4897.7222 16238.9539 3008.8908 4810.3585 8469.3239 8638.1126 11847.2298 11847.2298 11530.8206 14083.0141 17104.8244 6881.5829 4796.6183 15968.0528 6169.3195 18811.8523 15586.2276 12333.3744 6391.8597 6869.4798 3878.6323 5784.1664 6541.0466 111150376 limeh Carbon Cycling Carbon degradation Terpenes Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 22050.8841 11454.5423 22651.7565 3921.3588 6395.7241 4155.9452 14213.8587 20572.8759 6049.9308 84709.255 9582.705 7862.6908 16703.1224 7453.577 7453.577 88701.7684 12044.1912 23833.0164 21169.2018 25645.4194 5080.0602 3473.6379 12008.3207 13906.8144 5417.63 67690.22 6630.2888 10692.2315 2473.4805 6283.4096 8473.5494 3287.4155 12099.6103 167588045 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 65348.7845 284114.6195 22236.0008 17101.4544 13629.3461 30225.0206 33176.1313 16615.2762 34883.4988 43730.0343 54696.8427 505151.9093 31077.1704 145062.5335 78590.3652 25597.2825 25597.2825 19981.3839 59532.7164 25077.4914 67445.2754 56163.3071 27832.4532 25336.3272 21258.3538 33592.9781 23184.8733 60572.5695 49202.3551 43164.8224 21748.5664 23754.3382 29875.1514 25661.9942 59084.5098 7248705 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces peucetius superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13432.9637 15962.6264 10626.5252 18563.5906 9603.4852 32509.5715 12359.6322 30153.2771 15922.3513 29649.225 16884.3363 511889.1309 26644.9058 31721.6271 42936.0875 27027.6576 27027.6576 10378.5756 33997.3079 16091.2532 12831.8153 36278.7406 17403.4329 8551.8847 9777.0166 22937.7577 9476.3591 50691.5692 12982.549 35481.4183 8201.8504 16865.3593 38033.0538 10086.4343 745071.5263 302885782 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 36371.9353 12827.0069 11924.3071 22149.7829 25217.9158 10680.7863 11439.9165 8380.2406 13248.9732 16914.939 14058.5049 229347.2374 28474.7272 14500.778 7487.751 7575.1944 7575.1944 12352.2622 17757.8626 29890.7333 17458.3173 9476.2057 18099.89335 20616.0758 29767.1575 21179.4776 24778.8265 14149.7923 16231.1513 21675.9027 8257.8225 18099.2067 29466074 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5774.3324 3225.4881 6741.6194 2949.975 3350.5333 7280.7285 2743.1117 65064.7071 4109.6496 3315.3342 3751.5082 3751.5082 3174.8837 6819.7021 8645.5585 4787.8255 3849.6052 3982.9966 14562.2997 6839.592 21550.5062 9067.2865 7362.7095 3151.603 9808.3521 10778.662 2344.872 50952.6086 169866058 protease_serine_fungi Carbon Cycling Carbon degradation protein Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 143033.1812 55701.7471 1777040.7732 375250.4624 1926863.3187 533288.6099 31229.9216 116039.9979 82795.8222 71634.0585 83065.063 51093.9516 1230958.0407 267197.4258 125712.0017 129280.9828 405296.0305 97374.8356 41990.5718 56695.2194 195162.6175 167137.0926 59308.9404 53713.1888 101493.0861 84661.603 125021.6876 99000.3823 108638.1523 25083.0698 54835.8684 160125.4214 49420.2255 78186.2547 83650206 cysJ Sulfur Reduction NA Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 5718.7994 23230.905 25681.9475 4392.25 4191.2925 2462.3117 5271.6791 14442.2886 9293.4816 174244.184 7084.4842 7339.6499 13582.0682 5294.6748 5294.6748 3199.243 11855.3831 11264.1748 9389.6317 10999.446 10048.2491 4460.5922 4831.0941 10287.6814 4677.0316 14775.9935 10695.1358 11857.1725 4559.2928 6216.3278 5719.5046 4262.4289 8118.2467 296030169 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 6212.8304 4992.2486 7474.0528 8916.7478 5748.0605 2592.7683 4969.8823 5968.1027 3827.9278 96405.0036 5274.6626 5587.4729 9434.8471 9434.8471 4910.9063 14534.5853 7229.0628 5414.9363 9045.2076 5955.9403 6961.1353 3617.7323 5761.3863 4122.1443 28265.0774 6321.9895 12209.9455 3457.4699 5464.753 5458.9077 5366.8581 14658.1947 219997666 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 23318.6852 13842.6368 18555.1753 23270.2145 17032.3045 11595.5547 21693.4652 17626.6863 8927.208 19621.0675 40990.9712 9587.2084 390968.0747 26818.1365 23389.7467 15093.4389 11501.4536 11501.4536 14483.2175 42303.3442 19998.2286 15622.5929 24217.2763 21079.5684 9555.7584 11135.3378 28397.6843 10766.2578 45760.2832 14527.7039 27526.1585 11428.2615 12420.69 14024.1269 17735.6638 45788.0109 118046180 catechol_b Organic Remediation Aromatics Other aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 10381.2627 236340.6773 16128.9062 5564.8561 1462587.003 6549.3291 36502.816 16522.6016 45912.182 12071.812 46909.071 337631.7425 13986.1162 59466.245 7430.1041 41895.564 41895.564 19333.0895 125732.0265 15398.9949 29720.2546 84835.3482 215349.9079 12692.0101 17316.8509 114190.7603 9333.5586 60111.8167 34074.5872 70880.6142 8257.2841 33073.9993 27453.0794 12783.5806 13388.2035 308228031 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 7469.0369 113979.7484 5635.15 6366.2466 8166.2665 5538.002 68942.8444 4381.7498 4314.8333 16098.5562 6229.8543 6229.8543 3643.9938 16805.0773 5359.3289 4900.8401 34321.1072 10238.8532 6937.158 4238.9376 6933.5902 5409.4276 17043.9673 6398.0418 9300.7153 2767.6244 4460.1012 5032.7995 2938.7003 6308.6861 377818910 pcag Organic Remediation Aromatics Other aromatics Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 9301.0593 17591.3392 3397.3731 7893.6083 7919.0542 7919.0542 6361.7606 9521.3796 2678.7093 16522.8766 1961.0335 145280645 phenol_oxidase Carbon Cycling Carbon degradation Lignin Streptomyces cyaneus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7091.9783 16292.1112 3756.1155 3700.2247 6118.5908 5314.8421 72416.5593 4108.5535 3593.7688 4474.6342 4474.6342 3526.5924 8633.3207 5579.8151 7831.3008 12549.6303 4198.7882 2317.1156 4242.618 2280.9299 5878.0827 7948.1496 1622.0829 5606.3435 4230.788 3694.905 9336.7412 257054598 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 8516.2899 5840.2004 1958.6811 5638.3085 6940.3733 4320.7515 7586.0115 3054.0078 3054.0078 3405.9854 7430.4211 10440.2444 7515.2739 21050.7867 440116.3085 100365.0604 5014.07 8728.2973 5787.0869 2578.791 3798.6053 3523.9873 87281161 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6169.51 14729.091 2624.6891 2624.6891 260591180 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 4367.7056 3214.8551 3893.2709 6362.8103 3049.345 7693.8722 4846.1868 6665.9924 5663.941 6378.5269 8205.2326 8872.4413 2949.0328 4692.8379 3342.2644 3922.2542 6686.3086 256831611 arsc Metal Homeostasis Arsenic Detoxification Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 8115.9356 4443.0775 10191.184 10485.7505 4525.3408 6119.0179 14667.8474 3535.708 111929.454 7775.5633 7276.394 5109.6091 3254.8796 3254.8796 6590.1928 16246.4789 10682.1445 20800.8893 10972.5221 7444.0542 3491.1825 6223.4325 16599.0899 3766.2955 20520.3597 10724.4835 12566.2678 11560.9237 8187.8775 8851.1214 5655.3883 8924.9505 334130996 msmabcd Organic Remediation Others NA Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 11435.333 45833.2341 9438.9809 121572.2534 11696.7144 16560.9294 50327.4357 13264.9035 21222.9451 16799.5668 10243.8482 458771.1517 26764.4835 18141.5432 11639.2279 53241.8908 53241.8908 8851.4501 37530.534 17570.6098 23480.0024 23366.8772 14619.7393 9048.9052 28502.3259 16238.7737 28462.0756 52380.5702 10570.8763 24819.9933 20743.5521 12342.4192 16605.7812 10567.4969 24458.6191 254515793 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11931.6595 5198.2253 8168.4642 45084.1313 8641.0563 7956.3369 6140.2363 2825.0658 8597.373 22273.791 13244.3915 425174.9445 12334.1811 11448.5978 10879.7389 6827.957 6827.957 7756.5384 18855.5773 14831.9422 23647.2214 24280.0731 16003.97 7251.9103 9098.6511 29379.9074 14034.5162 34534.4906 12632.4478 15405.6854 7411.6904 10213.8984 9977.0307 7450.9934 22600.3979 115523281 nira Nitrogen Assimilatory N reduction NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13605.0904 62277.9834 5174.1855 130095.9884 4106.3887 71237.024 7740.3379 8020.1259 2529.071 2529.071 9284.0634 3576.7135 11060.4985 2891.8607 4690.3941 8708.1288 7737.5401 14292.3684 4129.8233 7359.4556 5005.7972 6723.5595 4049.8423 4247.0187 4445.743 119473354 cellobiase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 12826.8176 20657.8532 3993.5118 9135.8516 2536.4186 4030.2515 7023.4037 3801.4502 4572.5734 4669.2342 8063.1491 3150.7992 26524.6944 4619.8128 3912.6369 4801.2885 2630.7771 8808.4878 3065.9922 3865.4767 4992.1685 3927.5606 4807.3621 2667.9512 2758.9785 7218.7095 224602944 ppx Phosphorus Polyphosphate degradation NA Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 38391.1555 13390.2933 20698.5156 28501.8165 35694.4181 13268.9907 15306.1002 20569.2589 21383.4593 30854.32 109934.0002 273932.3523 435218.2461 54501.401 33365.9209 28924.0096 33203.5253 33203.5253 20643.4474 48023.6112 32080.1734 1200082.4775 43886.3916 54196.3853 14068.4257 22629.8095 82856.5555 22413.6131 81639.4495 30922.3906 214622.4467 24147.2138 39753.0433 28250.3396 28700.2404 35227.598 89512770 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 13071.1007 12681.8163 13222.9334 9104.7109 48432.8695 11934.7204 7387.9953 10925.6625 12347.6306 6056.5329 276895.0939 16842.4912 14788.4277 11432.4039 5843.2179 5843.2179 9923.3116 18618.2937 18869.0483 16818.9386 17228.4836 16209.3043 7724.913 7451.9074 19484.8127 38021.8635 35378.802 15075.8748 18358.0241 6481.9795 9902.5457 11423.2297 8289.4312 20453.3543 148240836 ppk Phosphorus Polyphosphate synthesis NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5234.7394 2680.5493 2999.9137 5096.6092 5091.1061 5948.3318 3870.9889 2798.1502 2798.1502 2920.4286 9457.2551 4830.3741 4322.7981 71275.7539 4581.587 2443.1652 10167.2953 4107.0388 15516.4135 5970.3434 16659.1288 2543.2205 6873.1016 4023.0922 4056.2203 10251.1001 82735823 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 75236.396 17977.9311 204681.4833 72059.9041 65519.204 18494.1263 48091.1666 70348.2764 48842.3143 54962.2199 45139.5054 52877.4213 1190816.309 71119.9411 71391.8867 161605.548 33447.0086 33447.0086 78974.7905 68891.1792 45428.1003 109420.8673 75158.7649 76552.5238 31085.7668 52237.7114 73377.414 37979.4319 151799.0103 50079.3599 63709.383 52523.6178 67882.7639 29568.7093 40359.688 63153.705 307941855 linc Organic Remediation Pesticides related compound NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4268.5144 2383.8022 3918.7786 51593.5048 115369549 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 12998.2381 10432.9761 30212.5329 23733.358 3983.3202 5307.3352 4023.1233 7128.8149 6314.2059 122562.5484 5478.2311 58249.017 14942.6963 9074.922 9074.922 6943.6785 4852.0544 5184.6374 2292.1584 3139.511 12309.7776 2171.2905 11637.7655 8850.178 8979.292 2398.7292 3958.1064 3878.7575 251798240 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14189.6177 8908.0921 9809.77 14173.9048 12367.1264 6357.2602 9419.7962 9104.0478 29535.8749 8868.5473 774039.1015 15225.9132 18433.0703 10102.5323 6824.3122 6824.3122 10900.436 24902.1686 18380.7907 12649.8013 19265.3151 14313.0558 6886.3795 9366.6156 17945.8259 10351.6552 34789.4834 19292.1751 17706.9447 6762.4232 10702.6577 16100.3396 6066.9129 31665.649 296029648 bphc Organic Remediation Aromatics Polycyclic aromatics Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 15885.8576 56381.1876 12756.1343 6439.0951 15567.4506 5459.9986 2967.2798 6605.722 14094.7493 14625.758 190682.7097 13346.6605 11121.7062 24733.8442 15186.4847 15186.4847 86984.7499 17352.4474 10774.5425 167727.9461 35132.2628 3688.065 4034.3059 7177.3042 18674.9953 12671.681 20627.0402 21756.9044 9800.0518 6779.5879 15396.1384 53625.143 12312.1433 86443.934 162072836 dsrB Sulfur sulfite reduction NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 5197.7472 1311009.4848 412025.6347 38279.7647 12130.1288 38731.0497 3814.5831 3626.1511 7409.2049 23072.9278 102351.9697 4284.3452 7541.723 8899.497 4589.0403 4589.0403 8443.9937 7142.4416 15220.3988 3982.1755 26676.489 8079.9506 3460.8461 22895.418 7908.1035 8187.792 5058.663 4328.9144 4249.3207 7564.6782 126629761 nosz Nitrogen Denitrification NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 11770.1902 6681.0545 8136.209 191991.0088 12676.3658 3484.2446 8865.2444 37147.8406 20533.1468 225047.891 9453.8246 6547.7929 10137.4154 7866.1912 7866.1912 34037.8901 16349.8891 5699.6665 6391.7658 79418.831 7366.7161 15142.0942 10786.992 13250.3007 64763.5911 8113.1036 25536.1759 5383.2243 21129.4968 8630.5764 93284.5459 24672.4744 166862752 ppx Phosphorus Polyphosphate degradation NA Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 24358.9858 17716.6237 19484.4731 42563.2058 13617.0861 17585.3733 23899.4481 20464.4183 32007.0292 44927.7273 14330.5227 316921.3018 28545.6833 19439.281 39555.6659 32909.7226 32909.7226 14054.1545 28343.5382 23145.9478 25160.2855 21111.7549 18570.5813 22582.1275 14077.8169 27273.8751 14250.1857 69117.9422 27871.9398 41197.7617 20474.664 19138.6656 22926.7276 22151.3335 30703.5524 302549410 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7595.1317 41665.3492 8617.0659 8417.8127 6332.5536 14263.3089 4712.161 4826.2403 4375.6155 15692.0096 11026.2153 105808.3954 17873.1881 7260.8445 5461.2427 5997.8503 5997.8503 3875.8202 10581.7357 5196.2514 12502.3538 30694.3391 6273.3473 4938.2658 4287.5683 10960.6403 14463.1259 10571.791 5627.4953 32327.2111 5843.3254 9126.5336 6943.7934 21973.0738 9887.4048 359404308 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 6616.9645 5371.6764 3023.765 7439.748 4110.8231 11803.8374 20343.7931 4180.9783 14991.2056 3661.5083 6857.4089 4244.5968 15861.8864 5053.7924 5235.5188 5935.5388 11042.3961 3905.7816 5641.9995 8012.4015 3906.5859 5377.6941 3503.715 8214.7035 302670065 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 4982.4008 6498.8012 2913.6901 2861.2594 2014.0816 7358.4669 3288.4189 71044.1604 7088.3855 3721.2339 4164.3822 6859.6739 6859.6739 6415.6479 10726.8521 6546.7378 15183.3591 14485.9953 4954.4383 6770.8105 3596.5017 8102.4791 2672.9116 7713.2343 6435.2347 13326.2872 2081.9825 6257.9627 6381.2487 3657.1694 6504.581 182633542 arsc Metal Homeostasis Arsenic Detoxification Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 11807.9395 42790.0866 33249.9248 4700.5595 13358.2798 5428.2128 6893.0314 6487.7201 7300.7116 6815.3262 5315.1671 7052.6918 2181.446 5608.7062 4338.0643 240172374 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 18852.7109 31882.8188 6135.9132 10061.58 11100.1762 9658.4244 79182.5774 7080.9969 7815.4958 17261.7915 13234.0164 283842.5117 9862.011 114139.8604 14928.6372 14368.013 14368.013 22303.6199 27050.8275 11997.2892 16231.9125 35693.2354 17202.532 8691.7447 72898.7431 18060.6187 19512.0542 36765.9287 13305.8506 15246.03 12518.4783 38706.7546 34966.2341 8855.435 48745.1179 189197871 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4561.0904 145553716 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8969.6743 38432.6932 2445.7227 4177.363 6201.9862 25849.1174 24838.5834 200868.515 17942.0202 5304.9309 5688.4079 7491.0036 7491.0036 27982.4544 157750.3146 38543.8673 51423.0782 6193.5268 374747.7011 50910.9665 25375.4341 5816.5077 20246.6243 43745.0901 14706.6171 14488.214 6122.1596 61174.1567 18885.2853 60522.6354 92906.2437 121584279 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5216.8222 9243.09 5057.6802 2140.0428 2140.0428 7066.6272 5406.7615 7285.2815 4764.987 8498.688 18393.7355 5751.5231 6791.5551 2221.5719 3021.4602 381379908 ppk Phosphorus Polyphosphate synthesis NA Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 76235.841 43437.1984 30406.9365 102144.4165 8504.7757 8344.6583 20960.8505 37860.7098 26972.4526 62357.2123 55229.9989 52682.8608 1020106.6924 121470.2342 43066.6129 51761.6281 45018.9872 45018.9872 38231.8302 81611.7244 32761.1199 30297.0724 92435.5021 61735.1447 51061.6565 45249.536 40398.1385 51315.7626 147363.1701 37417.1412 51549.4108 27500.2968 70538.134 93635.7091 39099.7351 42010.9131 171912080 RgaE Carbon Cycling Carbon degradation Pectin Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 23014.4335 6942.0833 10328.3345 10384.1562 6641.865 4826.3695 3959.8848 10825.8176 6814.3748 169835.3188 5093.8988 8020.3396 9661.1539 6234.551 6234.551 11202.0466 9795.855 31811.4903 9324.4367 11630.733 4282.8586 3396.8647 9361.19 4823.8133 14754.0709 15536.4227 10678.0215 7216.153 6407.3227 4489.8273 5410.2591 7395.9729 399987345 chnc Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 17906.2937 15014.2326 33029.3117 5847.0108 18249.4349 40823.3929 7578.1541 8220.2673 14803.3628 14406.2907 289950.041 18428.568 27052.0983 15673.229 10247.1021 10247.1021 32681.066 24184.9197 12546.79 280940.233 31307.8386 12398.0547 9154.0526 16934.5841 31689.0601 20322.823 47453.0012 30622.0935 35443.9634 9837.0709 15841.7812 18107.5521 12808.9687 23305.2753 383463702 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 8826.6606 4933.8944 5185.0522 3156.8079 3721.5043 4317.0705 10423.9204 3704.6066 5947.8428 3068.0624 9884.8537 5850.9693 5176.8969 7047.6716 7088.8928 2703.7441 3422.3754 4031.9069 11259.5842 4073.4193 8224.4589 1924.796 4515.382 3980.4368 5437.7106 7024.4649 17385556 protease_serine_fungi Carbon Cycling Carbon degradation protein Pyrenopeziza brassicae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Pyrenopeziza; 143245.7335 322631.788 16569.3767 27873.1352 19067.1168 34069.9719 96300.768 46896.8067 50122.7912 79761.6646 67191.0474 3789759.5554 52151.4537 267125.4523 105715.8429 57129.1277 57129.1277 51275.2282 86751.6571 33418.2377 67769.7764 126605.767 112080.0695 60803.7994 40869.2983 102721.6068 45733.6453 184743.9528 159819.7558 85498.1093 47034.7511 42677.695 64632.0425 39735.4915 98253.2099 145610993 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5331.1664 4061.1467 17869.121 3347.7046 3790.074 7005.9163 3709.9173 108359.5487 7645.2651 8553.8763 5154.2262 5107.4196 5107.4196 3225.5107 7998.0976 7133.9937 6064.7061 5070.6921 5586.2569 4978.4493 2992.2788 7377.9316 3403.6497 9783.0984 4661.1925 7795.4712 4806.6156 3131.419 3393.1655 4243.2725 4955.7407 329940436 merb Metal Homeostasis Mercury Detoxification Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 5696.2348 13061.5784 5220.5686 7743.036 58115.7521 4387.9892 5562.2382 2556.7622 2556.7622 7533.2347 4469.1264 7053.8766 3844.4883 4945.9577 2924.9518 2251.3463 4748.4915 71846207 TIM Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 8215.1799 8151.1174 40790.5498 11568.8055 7531.1726 10319.1 17226.332 7725.1584 6131.4456 178707.0429 17324.9075 15035.1166 17544.1042 10106.2996 10106.2996 9816.2985 39349.3017 22600.8079 8906.4975 5163.5639 4578.1593 2858.051 13703.5958 16407.5633 4995.8292 22485.1402 9313.6136 14267.7184 7109.3123 6652.8155 8741.4774 6697.1234 6161.9295 219807959 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11584.3748 6168.1351 7559.545 6674.4739 6162.5798 2946.8269 113857.614 6548.5479 3199.4962 3199.4962 4178.1126 11253.603 7804.7557 6221.2247 7711.4248 13880.9114 4462.8255 3460.4515 11197.5724 4387.1704 11665.7063 9603.5031 10792.2831 8106.4402 5824.1709 7065.7678 4865.0112 10433.4834 123988417 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 4295.2377 2679.0756 5154.3448 2298.6475 3554.314 47078.7044 3183.034 93915.4044 6962.8685 6459.8524 5998.0195 5998.0195 3488.4175 12120.1725 5938.277 4702.6739 9286.9318 4765.0282 3180.2529 2805.5352 6745.8248 2686.7468 22653.2899 6771.3771 8749.2341 2566.544 7620.7259 5278.1176 2982.2775 10224.3209 383340131 atza Organic Remediation Herbicides related compound NA Streptococcus anginosus CCUG 39159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus anginosus; 6488.9094 7626.6473 5226.4987 5237.918 4136.4487 6368.182 2688.8738 134645.0136 7698.1933 5529.9907 4614.7317 2601.0767 2601.0767 3878.7537 12134.641 9079.4471 6644.4458 7515.3156 16260.1065 3733.7805 3277.5271 8812.1677 3195.4436 15380.8143 6977.2301 8860.242 2651.2067 5100.2208 5195.8339 3420.5015 11334.4976 26278818 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17434.2099 25989.8627 25924.1571 32873.2721 24220.7192 11210.0574 11870.9198 5493.182 13954.075 16751.3593 33399.7532 379768.2262 35345.8126 19936.8942 33885.0556 24209.1967 24209.1967 9453.2436 30810.6821 15506.5267 13160.1754 13464.1189 31627.4526 10147.7045 8180.9557 23898.87 7896.7634 28649.5286 26439.4704 22824.8002 9886.4594 11791.6369 28304.756 10539.9054 18531.8689 253982722 fccab Sulfur Sulfide Oxidation NA Methylotenera mobilis JLW8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 14953.9154 6904.0614 10432.2447 16254.4968 7865.4856 4855.5395 10002.1347 13053.6234 12411.242 3640143.7319 13449.4452 19601.0609 12426.1772 10784.9695 10784.9695 12026.1646 26810.2991 14131.342 28146.7795 22081.4398 13149.2248 6613.6893 4551.2795 14002.3223 7989.7484 31043.3726 11219.0199 16432.0079 7415.7905 9156.474 15791.1412 8908.023 22473.666 170174517 terc Metal Homeostasis Tellurium Detoxification Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 32235.7806 16385.7986 14407.5205 27923.5562 16459.6201 16556.7592 17429.5452 12538.1105 16510.7934 22583.259 7384.7852 481807.8079 25463.6348 26107.3812 17555.4854 10227.7935 10227.7935 15337.5491 32536.7333 23679.3497 25100.0562 32605.5281 31702.9209 10923.6518 13018.8497 28010.7996 9217.1334 48531.4411 25433.8252 29324.8785 11540.4413 16018.7611 17636.1667 11327.1366 33491.9266 388426912 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus aerophilus KACC 16563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6546.8091 3936.8093 3821.8827 4036.018 6312.827 4365.9413 4046.5372 59355.5848 5457.5978 4624.1029 4804.56 2196.7097 2196.7097 5075.1465 12954.8547 5128.5408 5961.1228 8128.5379 6429.4244 3427.2112 5466.103 3153.9411 13746.6544 4070.7948 8509.5098 3821.5486 5748.3916 4098.7689 2059.3945 9819.0065 344315293 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 130543.4372 58752.7737 88526.5971 37326.9183 11590.9847 43885.2703 187717.648 33876.1539 41338.2294 275667.4058 59346.6211 789198.1093 88728.3191 53821.095 108192.0273 98230.7372 98230.7372 68578.5334 93751.6696 23872.1004 234719.395 90844.5755 76141.7307 38691.5539 42285.1486 58205.5168 67885.0573 178418.9611 87503.5177 66749.0227 24118.1198 47201.671 57368.4767 36157.825 157449.9354 306819964 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Eubacterium yurii subsp. margaretiae ATCC 43715 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Eubacterium] yurii; 3845.9756 4233.1936 6879.7656 3271.8705 5397.8333 3413.5253 4519.848 2232.783 88344.7264 2964.232 8019.1337 5463.7723 141657.1187 7229.4705 3499.0946 6521.7409 3020.4218 12841.0739 5199.7119 7929.0049 2394.9222 4141.9094 4286.2847 2240.1655 7514.4075 109452563 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17084.45 20769.3845 5737.68 11250.8273 17259.1342 8665.2528 7240.56 9406.4677 15973.6485 21006.2532 168789.2172 11704.6675 12624.0168 6797.8706 6704.6908 6704.6908 9105.9962 23591.6777 15762.0563 16379.5536 25216.8644 11876.8925 7699.4466 8798.704 14789.2045 7795.2487 28225.6793 20459.7774 16395.7921 5955.6077 9430.2023 18685.5084 7312.3564 21316.5903 402251184 catechol Organic Remediation Aromatics Other aromatics Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 27097.732 29117.2813 19719.522 97885.2216 8242.7233 9046.979 23173.4152 11307.7064 11819.7325 91892.0496 21591.9539 431455.2715 15571.5873 20076.1444 23041.5896 68239.4167 68239.4167 18488.5066 106957.8519 13018.7939 23863.809 29325.2745 23289.6598 11550.385 14152.1562 21308.4165 34944.4508 56269.8436 45311.5135 28968.9309 17890.5808 19139.5283 18069.2903 14232.8191 41687.5113 255292491 xylg Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 31593.6027 9351.3151 4095.6701 5194.8316 4222.3579 9927.5148 9469.3018 6729.6385 63256.3772 7086.2245 7129.2469 24060.4256 15725.9367 15725.9367 5164.0964 20051.644 9819.0543 7346.1371 9803.0477 23712.4234 5073.8938 9043.0648 21157.2056 13297.0217 35496.753 21231.0256 12625.0884 4928.7866 13730.1905 13240.961 10876.4016 7396.2806 291566055 amyA Carbon Cycling Carbon degradation Starch Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 36512.9824 11686.259 91701.0399 8057.697 6116.5013 7309.9757 86601.3595 13710.6192 67284.4262 5206.3164 5464.2176 8164.6958 4322.8698 4322.8698 4333.4202 40406.6898 6337.8393 3968.5896 7854.0187 8681.2048 2165.558 8730.5532 7675.3553 7261.9301 11691.675 8809.2375 554305.7286 5257.3109 5250.8413 6589.964 3211.3907 7973.4199 226090969 ppk Phosphorus Polyphosphate synthesis NA Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 38268.4007 10475.5833 19160.3126 27503.456 82719.5686 52939.5928 43864.5965 32506.5236 14423.4327 31712.0519 52842.8183 29710.395 889332.9634 42725.2523 44524.9771 27933.2418 45414.6064 45414.6064 21004.4133 59092.9883 39745.0372 23247.909 48679.8751 34812.1401 14885.4968 18980.1913 51816.2515 17734.9048 77194.9868 39823.716 49440.3023 24948.3209 42923.036 28291.5876 14937.8934 33504.7783 294476545 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 11265.352 8643.5874 8350.0085 16349.4832 4873.94 6928.5821 3207.1647 10607.0843 9669.0999 4483.0912 197388.3181 8470.1304 8370.38 7095.4823 4759.678 4759.678 6480.4938 14697.6113 10769.923 11478.6039 245637.3386 8102.0607 4828.8059 6007.0793 12364.4278 4556.3925 23741.6183 10857.4407 23853.7406 5118.5508 8776.5346 7400.6382 5985.0055 12484.3148 192764408 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 86500.1508 232732.762 45332.8062 800503.2442 854465.9842 39314.5329 47839.0929 58843.4936 63395.0526 90226.7901 50907.7724 665166.6439 48991.4899 108698.6446 75016.9718 68164.3062 68164.3062 93349.7329 78542.6152 40814.1507 73484.6159 149207.175 187023.3484 90358.4319 69320.5325 52119.5454 53998.1302 277115.8278 69193.0231 47669.4495 22281.9498 98107.2713 169365.6148 36266.0515 171589.5072 154350630 amyA Carbon Cycling Carbon degradation Starch Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 8813.8382 66330.5952 7249.3746 8578.2575 9618.6821 7445.9817 7872.2583 13496.1668 148325.1823 11529.1707 227323.4221 8306.787 10565.9612 10565.9612 4989.2041 25718.2967 8772.6248 7231.3883 23152.5171 2092425.4398 4960.6841 16838.2853 11444.2048 9066.9083 49384.6605 8365.0917 10443.2646 6902.2705 5647.1192 7718.5665 3809.5654 12723.2475 261281092 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 185410.0862 23120.436 174340.2726 1693275.3796 415775.5794 114821.4855 174403.0345 325432.3661 69679.5271 265049.1313 279894.3903 168448.1429 2341663.4807 224498.7053 593401.7213 281261.3193 181444.6074 181444.6074 273138.1414 129728.3786 78239.9081 74334.6015 116725.426 153900.4814 194633.9493 110721.6879 152423.5489 67205.8244 795373.3088 217950.4778 213566.7587 55725.1339 91934.972 159301.8537 162453.9718 255814.0666 91699573 dehh109 Organic Remediation Chlorinated solvents NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 50423.9944 159322.7074 130634.1023 112478.0572 8834.1495 84985.9892 51341.4089 18708.2119 18237.3328 98195.5512 76607.1642 393557.9968 35959.7865 25206.8852 238731.052 56385.4143 56385.4143 20490.3784 78430.5983 197630.1786 29930.3396 27512.3039 127550.9866 10998.5285 37515.1937 51908.6779 39729.2069 71579.0723 58149.3061 57947.7246 39656.9183 34507.6606 67556.2307 12156.3511 33854.7727 298537318 amyA Carbon Cycling Carbon degradation Starch Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 62864.7591 10272.8582 1695530.0897 39736.7284 13118.0995 9279.4976 11951.6144 2970.1568 5841.0414 8919.7677 4331.407 483498.6523 7447.0817 11431.2254 28198.5625 15168.0391 15168.0391 5144.9765 26818.8038 13357.0272 3688.1099 6444.6199 62829.1425 2747.6939 10228.129 21262.8719 3180.5527 18127.5324 12500.4685 15774.8648 4681.9376 8251.2011 10807.5966 2129.552 31233.1797 159027867 pgk Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 760477.4374 7929.4821 12466.4551 13758.0303 6045.7304 23940.189 10126.0689 7964.8506 13469.7159 22725.0576 7680.2235 340701.2207 18998.5089 15045.6647 9536.6662 9444.6203 9444.6203 10096.0898 23678.5622 16339.2005 14129.6422 26653.3873 22177.184 17091.5669 8406.4822 17801.1897 10817.9213 41487.3047 10475.1449 21681.3432 7202.741 9179.5817 12288.562 8698.593 22260.3899 256831609 ara Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 11462.3131 14409.9102 17761.0603 29486.362 8587.0718 9359.928 6775.3136 10505.4197 10304.4937 4158.3914 2050105.3473 11067.5228 9613.2296 13050.7343 9041.8619 9041.8619 7392.2595 10490.1797 7796.7703 9516.9123 8272.0213 8982.6799 5403.0147 6240.1449 16990.0657 5555.8303 22094.2583 7956.5087 16589.832 7228.0722 7064.4541 7877.7701 6701.711 16805.3657 10505267 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudoalteromonas sp. EH-2-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6905.9824 7995.4378 6866.9472 6210.4574 10130.983 4164.2035 6102.061 8264.1609 4193.4021 6895.5537 10001.6572 11748.7289 5642.2006 2754.9004 2754.9004 5429.9914 15292.7738 11510.5748 8824.6739 15135.5994 10024.5801 4132.4962 4909.4416 9301.5221 7052.0756 19643.4315 9556.6129 15565.9844 6090.9627 8668.1886 7283.4616 5290.0813 20556.7477 66801853 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 7330.9936 2774.2692 3055.6364 6412.1433 2273.1418 64921.694 6033.6271 1825.5186 1825.5186 3521.5749 6381.529 4177.2038 7506.6094 4356.2416 4046.2344 2384.3319 3147.2452 6299.9335 9681.8314 8639.9524 8894.6179 9483.6204 3886.369 3268.6926 2371.2397 372270101 catechol_b Organic Remediation Aromatics Other aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 16495.7387 19718.2615 4497.2353 4118.0289 14598.3584 3572.8246 6459.4546 6966.5459 22308.264 157018.377 7000.3388 13739.8431 5851.8814 6159.3702 6159.3702 4256.176 15809.4679 6786.1021 6829.7001 131130.3403 14757.4539 4131.4329 5598.6793 12590.383 4243.1099 17774.2627 8603.3786 11630.9057 6061.2572 10623.8663 11147.4849 4904.9678 11365.3324 260617465 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 17504.7842 11056.0128 79925.9528 41006.8847 13091.6742 16913.2494 105536.6761 10655.306 30548.551 18109.6395 284268.3019 14225.6977 26165.7987 20162.0229 45938.0657 45938.0657 10836.326 26922.2154 20705.1171 55853.6889 28127.6483 51868.9172 13796.7763 10868.7379 19667.9841 13288.6908 54899.7044 25714.4198 21064.2594 11919.7598 10356.0334 25052.4854 20941.2149 19806.0089 109699452 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 7999.058 3587.7298 9654.3093 2887.2338 5994.3891 6107.5974 12338.7861 88618.2086 5621.408 5785.3434 3777.1426 3777.1426 3617.355 10227.3056 8218.8166 13970.6363 7778.4462 12550.025 3625.1425 3255.357 11965.3625 3386.4398 17347.673 8051.4475 14217.8058 4253.5932 5472.4832 5712.7644 4389.7293 13417.0614 117619150 amyA Carbon Cycling Carbon degradation Starch Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 193887.6331 32012.6631 5108.6294 10574.1722 8941.2438 16722.4664 14716.1785 15565.2391 9126.6413 19284.1879 23280.3024 2045912.1009 17076.083 43479.9608 26356.878 48007.55 48007.55 14365.2936 33774.4852 18959.1441 20119.5123 36213.3586 373925.0078 12783.1606 11598.5954 19664.4464 21401.23 45524.133 17254.9127 72154.0537 12621.6707 19729.283 28749.5253 36366.7833 6937.1456 328810423 bphd Organic Remediation Aromatics Polycyclic aromatics Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 24457.927 27015.7731 21730.2627 18678.5809 6014.0293 11710.0903 19134.9465 57528.6241 232596.5268 16423.2851 20477.1832 11847.6264 10019.2842 10019.2842 33031.9757 21418.6306 12763.9304 13875.6931 20945.4522 17724.07 42575.1179 18971.58 33726.2994 19399.9697 26213.8442 16139.3644 21760.3121 9984.0605 12723.9096 14064.2651 12645.4943 16559.3531 302541933 ben_bcla virulence NA NA Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 19519.8052 6923.1357 9681.4041 76647.7749 13316.4956 7980.3409 13100.2385 32633.2324 8292.0072 13708.5312 21662.8687 150795.551 29191.3437 22462.761 14023.1409 31980.5873 31980.5873 12098.0949 21831.5737 10569.9571 12255.9855 23042.3833 164640.1153 6070.6305 12551.0947 173699.6288 13493.5618 91747.2587 27061.6222 36884.9922 16874.5344 11815.4424 13950.6053 15356.5304 13561.5184 140713422 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 7928.996 7393.8574 7974.2481 17102.3409 2510.9992 5530.8582 8673.6796 13309.6582 114282.0467 9369.6262 5659.9006 12669.3 2120.6115 2120.6115 3694.2098 32502.9942 7474.6188 7868.2429 18397.7391 9110.1746 3722.4681 3818.8982 6851.4227 17780.1052 16753.0566 9593.2683 12851.2491 3116.3668 4903.6159 6626.0719 4974.913 10673.6648 302348872 cda Carbon Cycling Carbon degradation Starch Acidilobus saccharovorans 345-15 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Acidilobales;family:Acidilobaceae;genus:Acidilobus;species:Acidilobus saccharovorans; 8237.7706 6044.4608 6336.188 8003.2137 6407.5248 44675.7569 21542.1748 6673.8278 30297.198 5929.6659 1237805.7018 13611.5743 38607.2476 215652.5086 80782.0312 80782.0312 2565.0043 7122.7558 9549.4629 5760.2235 5533.0312 3609.9438 4390.8699 6190.1926 5495.064 20895.2264 10119.4103 3581.828 6670.1849 4537.3501 3657.6909 5868.3741 4741712 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 4978.9791 14683.4046 5868.5746 4316.612 13653.4125 2652.3029 2803.3393 10522.9797 10277.4517 2516.5427 164036.0684 8160.5365 12507.4822 5352.3817 5112.2777 5112.2777 22817.4152 15559.7013 10416.3713 5516.4997 6411.3786 7211.9647 3988.1294 4492.1157 12270.2689 4045.0629 22625.4956 21198.1285 16155.5461 5447.3121 6960.9372 6349.0474 2992.9855 16892.6888 300718735 atza Organic Remediation Herbicides related compound NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 29615.32345 11800.26795 31270.90795 21806.06875 23697.1646 5359.14625 215163.40595 171460.4243 24959.87235 33660.61825 47417.6487 20700.69835 545121.5763 38438.24075 63597.06035 62546.7168 23812.78915 23812.78915 23564.4981 52247.27935 40405.16455 34784.81285 58882.862 40097.7057 18794.07265 19218.32015 45027.2691 27088.17075 92742.3946 48537.59675 65942.74155 22690.55775 22483.66485 27299.4692 17319.857 48773.93975 45386193 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 4126.0221 15160.6707 2908.4301 8838.368 2400.8615 3389.7799 6242.5736 148613.0897 4959.2323 5213.1905 3701.4146 13899.6422 7046.349 2486.6443 12225.955 2582.1341 5997.6575 2391.6286 2822.2494 78362787 SoxC Sulfur Sulfur Oxidation NA Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 12933.0221 9791.0122 4015.0533 6660.8472 31684.6803 2589.2886 14017.5902 18635.6675 13303.7506 728424.8908 26777.9365 5516.551 79190.715 79190.715 8202.5474 22654.5983 10610.4753 217508.2635 25296.791 22625.3781 8932.6122 199998.9978 116737.1525 11810.1959 24138.7372 16376.4409 15610.9197 13529.7767 150166.3719 12693.136 16094.8697 16210.9923 108760660 endochitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 16949.4409 4749.5809 14839.3555 28467.8355 7125.2357 5711.6923 10084.8933 14787.8527 11728.6998 587137.0524 5868.6582 73159.269 13423.3221 22744.7017 22744.7017 4402.0051 14771.2112 11007.4881 22810.5279 8582.2161 6253.0348 14841.0724 6569.1394 10892.4851 35449.6694 36881.8725 14051.3719 10344.788 5588.3842 9464.6206 5228.8354 10224.093 11663.7088 189496860 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 21946.4084 4375.9166 7356.5315 3941.3027 3906.3655 2837.0622 5639.373 3623.1618 2255.3539 82274.6077 10239.6247 10579.6326 3021.9513 3021.9513 3687.3175 12198.6272 13341.2163 4501.24 6000.7368 3227.725 3948.4943 9662.8128 2907.159 11438.7575 8157.1244 10364.5366 3032.4844 6208.9546 5359.3419 2951.2261 8273.5836 302407187 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5039.2884 23755.308 7165.5779 13562.495 2217.0353 4453.693 6895.6801 3677.2449 88667.3384 4657.896 4964.0978 9059.9712 4097.5837 4097.5837 4076.9117 9661.2279 9694.4344 6880.4397 6666.403 3062.2853 8547.2841 11199.9855 2278.9643 23595.1507 6554.6874 9824.8584 3128.3841 7443.0753 8611.9614 2638.7884 8816.9232 254423965 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6319.932 7935.3921 7024.763 57366.2043 4218.4806 4929.9825 27994.6392 66403.6601 6989.2775 116187.3974 9013.2015 8517.9028 9184.7253 6217.4732 6217.4732 4820.6249 14520.3251 27174.65 7558.9013 10839.1818 9481.5712 6651.8853 8537.9855 10887.7163 4640.7787 23121.416 11473.8198 14715.6216 4833.5501 9023.5863 8357.2227 6219.8739 7914.9056 256794458 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanocaldococcus fervens AG86 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus fervens; 6937.8478 8408.6504 4499.4802 7224.1806 4283.9622 6212.1209 6984.2335 3469.7431 15901614.6489 7739.5102 6259.0628 7335.4826 4115.8208 4115.8208 4509.3477 13674.2961 8220.5526 7980.0251 9991.6527 10798.2787 3989.1041 4953.6341 12390.886 3609.0694 16225.4204 5189.3875 9285.5953 4865.519 6201.9273 6253.4808 3989.2493 14183.8337 86555282 trze Organic Remediation Herbicides related compound NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10922.1557 6730.8187 6408.9924 23112.6308 7869.6745 8357.3747 10602.3771 38884.5405 14125.1373 96238.2558 4298.9423 12802.1077 10229.4721 7206.7028 7206.7028 6289.3178 17320.5735 8581.1475 7445.4144 12258.2402 20835.5853 48674.1232 10831.5425 12329.4718 10880.7026 33925.962 28320.2609 20124.6241 6450.7999 13861.0799 30254.28 9096.4952 14930.393 333965555 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalimicrobium cyclicum ALM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 11312.4224 131442.19 6141.4849 17339.5976 8180.5382 5477.8161 3874.6158 8215.7562 15857.7556 5337.9437 243934.3368 13579.3212 14437.2931 5190.0567 3304.5625 3304.5625 6582.9031 14196.5673 11817.388 12488.7059 11065.3419 13887.2555 5622.5886 5134.0195 12975.9947 5739.1753 20573.5109 4893.07 15674.44 5505.2376 6603.5825 8285.293 4774.732 12822.6469 85080647 exoglucanase Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 17658.4969 6129.3333 33802.5005 15044.4943 6126.6264 5120.4742 7312.8933 12164.9201 7070.2873 6577.8838 93117.01785 7626.4528 6711.4415 6212.2206 6212.2206 5512.0567 10246.04825 14026.1693 11577.3386 10995.4319 5107.2673 3291.7663 8099.9116 11322.86685 8273.3044 16783.8145 6999.7912 8733.2052 8992.0147 8063.1916 8270.7352 21623.558 12208.0525 90022300 beta_agarase Carbon Cycling Carbon degradation Agar Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 4151.9736 61902.5745 5430.8389 2802.1102 71667.7178 8379.0926 3771.4594 3701.5814 3231.0716 4940.8643 332880342 RgaE Carbon Cycling Carbon degradation Pectin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 8950.1585 700760.5656 2890.1706 8993.6132 6659.477 4676.8046 15580014.7188 4718.6267 8393.319 8393.319 7083.0964 4292.7661 11043.9533 9712.8588 2319.6482 11397.8741 7565.7018 14533.9332 6995.92175 2100.3006 4520.4835 6697.1709 3781.2777 7153.5448 154253605 TIM Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7582.3791 9135.3954 11580.2327 7152.497 4301.778 6034.8511 7518.2118 3992.0009 100401.0256 6938.2075 4678.5745 7727.5369 5884.1727 5884.1727 56300.1705 11897.854 7820.9273 6955.5853 31325.7524 6289.2011 5583.2171 6856.1033 10397.4418 11051.8499 16690.2912 10538.3852 8392.7583 4536.551 6095.6397 34836.8585 4183.2855 7336.095 332377324 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5302.5788 10622.9537 4020.322 39972.2157 7029.6723 11409.7156 138595.0702 11169.4588 16923.3397 4264.3994 4264.3994 11031.6024 9105.739 267659.8549 5610.9791 11090.6013 11423.6777 6651.8414 5478.2125 12131.1693 11826.6904 9854.3611 9555.2253 5194.3424 6579.705 5379.0675 7769.7076 126436778 xylg Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 254605.6008 4120.68 5308.6282 3839.5218 2385.1093 4213.588 3957.6546 4650.3132 4575.6236 2248.4607 2248.4607 2816.4507 8578.8852 4818.6991 4384.9043 6536.1712 3998.098 2471.7963 2826.5561 8006.9746 3361.79 13775.4184 4374.3348 8818.1483 3148.5265 5596.1725 4047.059 3077.3837 6192.4468 110823901 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 30403.9783 8396.7795 25342.583 10054.6642 11918.0809 164258.3036 9322.5102 100259.2522 14829.1209 10580.3556 247042.1255 20506.3866 9434.9735 14107.2434 12222.6094 12222.6094 11469.8195 26398.8701 12342.5229 21028.7699 18183.1873 36868.1369 12064.9205 19825.1253 21118.1263 7154.3048 33728.0026 11054.4416 15425.8021 7412.428 7979.5293 17073.164 8968.0333 28085.3836 116623484 xylanase Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 157072.8643 54400.1761 110753.4049 12093.4374 13077.0422 541954.0534 313327.2679 72928.6149 97978.8582 99797.891 57669.1266 1194227.499 48425.3163 73381.0115 32299.8552 26855.5112 26855.5112 19827.4428 102242.0206 23951.6068 24754.3279 186963.8062 45537.9452 15702.8278 40205.1358 80733.053 33630.4419 66096.8403 24890.1047 37593.4641 43346.8485 29843.0742 51584.6716 17957.7125 165610.5012 14715443 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 69491.4816 12903.5602 50757.1444 39169.7216 45578.0075 6982.6025 69253.4347 28655.6088 113151.7678 78918.5359 207954.4507 21326.8113 438631.182 29813.5564 26655.1493 55555.4335 31002.4762 31002.4762 37873.0187 48911.1332 63804.7996 11726.7518 42388.6666 17828.6693 19212.0207 60234.5619 28800.7759 25469.2551 61529.1516 43614.2778 29976.5959 18598.1915 20608.7808 25558.8258 18050.0263 56163.9858 225042544 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 4635.6632 14229.5772 3729.8046 16360.4929 5469.1061 7625.2545 3000.1704 66966.6534 6939.3221 4921.5886 3696.0495 8044.8052 4653.1615 7909.8826 7558.3766 143036.8298 4704.6094 5055.5897 10756.1292 24190.4845 8744.8973 13673.6078 7585.9781 3243.6287 10085.2371 6921.3735 3390.1018 7361.1431 126728735 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 16959.3574 9013.5314 4530.6934 6611.9346 9246.2019 4621.9449 5678.6318 3570.7864 109804.8045 6385.9699 5848.798 4632.9965 2379.3645 2379.3645 4348.6923 10656.187 8458.849 4471.4361 8612.7387 13346.5555 7008.3907 6298.9908 9430.9474 3659.7162 13450.2572 4225.3995 8488.0745 4327.539 4462.0864 6486.7966 4231.2703 10641.7744 115371933 ppk Phosphorus Polyphosphate synthesis NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 453511.8664 62372.4002 586562.4968 180001.3764 60159.5215 2180720.8671 249763.7883 538530.0757 67339.4437 259553.7169 152111.5259 161391.1296 3182423.4224 184247.2672 145290.4195 207873.8546 352363.8869 352363.8869 71136.6973 210031.6932 127636.2295 217313.7751 222540.3442 3125105.414 143041.29 154824.1627 456743.4442 239532.9881 574429.129 158963.5664 231794.2635 227745.1242 186461.7571 131963.9864 138930.567 294497.543 355674287 atza Organic Remediation Herbicides related compound NA Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 15598.3012 15734.0129 4959.0429 29476.6475 10377.1444 3576.9369 8388.2554 7554.5386 19234.9901 18591.9673 7858.3219 332667.3055 23570.9081 30507.7315 31619.2788 23494.4947 23494.4947 9293.1101 37883.4898 61218.0853 26279.946 23995.4624 9901.6615 7967.0282 10680.0175 21885.9706 7115.0915 32469.5087 21393.4266 32856.3211 23188.5791 13272.9225 11572.4717 5424.4407 17937.4633 374349036 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4077.0289 3349.2714 2956.7566 5652.6886 26774.8187 9197.832 12319.3562 10815.6207 2501.7607 3717.4899 7483.9539 5911.7495 2088.4474 3117.1938 2763.4288 2874.4021 91777807 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9624.3589 6087.0392 7498.362 9512.985 11074.1534 7647.7122 10511.3264 10154.5064 6538.3452 4297.5212 165694.1002 7944.1359 7414.355 5717.2366 3470.665 3470.665 8984.8195 12836.5059 11360.8329 9204.6421 9467.4791 15299.3516 5556.6691 3872.3403 11992.8591 4974.5142 62242.204 9984.2952 15706.649 6353.5991 7912.9475 14125.3453 5293.824 14240.5872 398157243 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM41(2012) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 20716.0988 14608.4217 10803.7712 10081.2925 7640.4771 11246.8394 10790.3151 5249.076 24431.2278 6244.3554 3940.3913 3940.3913 3304.3918 12533.4775 15305.3841 6203.0376 14459.7425 3794.324 15221.7186 32778.2826 74321.237 9670.4452 7909.3285 2680.1064 13822.584 11225.7914 3285.967 391318737 tehb Metal Homeostasis Tellurium Detoxification Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 79201.0026 94105.2645 42963.7527 43073.2379 33383.6559 17337.0248 56913.9885 36210.6449 92789.0598 18932.7086 50353.4708 36637.7641 649442.8323 44282.7156 46070.8329 29003.1731 95588.0227 95588.0227 25270.1042 68277.216 40390.1887 62394.3384 51642.6451 44224.0242 26383.0917 26776.5813 35293.3214 40679.463 152629.8112 50314.9409 47048.0597 30632.6927 52710.1175 39966.5086 42434.7163 49388.7255 357939658 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 255599.3227 14274.3465 8118.4239 5559.6838 1895.8367 4720.1604 6733.986 14223.8126 12845.0595 9709.7167 107295.4068 14312.0979 6706.4082 7054.6504 10836.6468 10836.6468 5082.8857 38828.4618 27969.5073 10022.8903 27109.0665 7777.9461 8400.8047 24517.2834 15081.2382 14393.3957 45523.8792 13904.2337 16821.7502 24207.0346 20735.8945 16521.1693 15992.0386 14039.0319 288943677 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 7831.7478 23943.3633 5369.9651 5887.4927 6476.3881 8991.9404 4067.4816 9733.093 10630.4316 7562.158 262875.2738 8518.1565 7293.0698 6832.2053 3385.7325 3385.7325 6805.46 16307.0992 12376.5349 10481.402 27380.191 8873.4466 6571.7451 22096.4813 13306.8309 15236.2958 26103.0421 4375.4095 24037.1492 5343.5957 6364.5704 17999.0857 5692.6078 9060.8796 365808300 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 288194.1213 24091.5352 10772.7909 29886.4774 10344.7946 4797.0677 13848.4967 5527.1673 5256.3242 6349.2384 6861.5083 278345.8739 22669.1571 12276.285 9917.8922 9555.9704 9555.9704 7293.8176 17293.2237 9538.5236 12551.9278 9655.0149 19887.1079 6933.5411 4873.5842 13508.0493 11810.0667 21938.5449 19538.4784 12196.6563 16657.6748 7676.3573 9669.545 5112.8026 8888.2277 152967017 amyA Carbon Cycling Carbon degradation Starch Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 9358.8266 7336.2589 6733.3343 2130.674 7794.5107 25561.9518 138559.9216 16833.3588 4524.3817 15851.8276 4904.0828 4904.0828 6381.7183 12668.5164 6400.5753 8028.3459 16178.3382 10391.8467 32254.0822 5116.9622 11410.9124 7454.188 11339.1928 9067.9292 6226.2564 3484.9011 5178.9398 12693.8536 3500.8549 10781.6828 325979754 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4718.2684 44943.4699 4830.2416 2800.0129 3858.9466 2538.1624 2538.1624 6072.6874 5327.8438 83153.8498 5281.2783 47725.535 5201.0885 5522.3602 6348.3702 1593.5349 11050.3733 42461.9863 301062282 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 16391.1648 203722.3958 33839.4384 74049.856 43014.0038 8507.4853 6449.6148 17088.5728 16176.4951 9128.3021 136581.1251 12718.1465 9362.8665 7971.789 5997.5483 5997.5483 5793.3249 16645.3829 12996.5709 24612.7642 13221.6934 15591.7461 7341.0609 5251.0609 11895.7718 6940.3601 25136.8321 17334.2928 19867.9595 14848.4736 14467.7329 9296.4355 7453.917 17018.5108 114327315 exaa(moxf) Organic Remediation Chlorinated solvents NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 10058.2693 35308.2807 13942.1649 11124.7452 10833.3785 9650.1317 13558.0405 5970.459 94898.9734 13557.0269 8844.505 10438.1884 6978.1338 6978.1338 15180.3988 12458.3094 8061.0246 62407.3805 549382.2149 8378.6296 13736.4313 41702.0096 10947.5801 40770.7995 24185.323 14284.2369 11949.1211 6156.6011 38108.5009 7583.9408 7173.7058 15768.466 62120271 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium ratisbonense superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 53547.5361 12412.1728 12804.8348 26924.3697 28894.9563 8608.3433 16557.1755 19519.82 29279.9562 19055.4736 37563.2575 91036.3421 588534.8565 175502.8653 23973.2804 335007.3142 23168.7169 23168.7169 13852.6883 35829.1326 47905.8226 17865.8951 312445.8896 22583.3267 14742.8588 36722.675 27468.9527 16636.2052 98966.5119 88170.9382 37472.1376 20497.0604 26465.7863 18540.0187 27588.2284 28689.8394 309312337 glucoamylase Carbon Cycling Carbon degradation Starch Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 49173.4087 30885.5417 31534.2635 28928.9531 15262.3736 42990.0212 26159.8281 21596.8644 11921.9294 38897.251 28599.3841 19306.0453 598898.1569 27924.0871 73278.0946 38764.074 23731.3278 23731.3278 13657.0945 29504.4166 15333.2871 30609.8393 22372.3647 40644.7367 9374.4552 14184.6307 32901.8189 10027.2546 52565.0781 12406.8232 29362.74 9798.2225 15257.6976 16154.6204 15385.5216 19810.4564 114778865 arsc Metal Homeostasis Arsenic Detoxification Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 45539.6998 15321.6945 16533.9548 20912.5433 7685.6366 20593.9767 16574.7107 16701.7925 19483.341 26507.9556 12062.873 438979.5182 26852.227 41971.1336 25074.6954 12791.7814 12791.7814 17510.8698 30151.3373 89394.2129 26158.028 33609.0856 34352.0862 12743.6232 14044.752 25603.7847 15545.644 39205.6303 31488.5 30380.3564 15396.446 16391.2303 55761.7763 15414.8993 38325.6185 118027429 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 6025.5112 10723.5454 19980.857 6265.6776 18805.147 5295.4911 5264.4412 190018.8941 5852.592 43097.6862 14680.2086 14680.2086 5938.2651 8996.7092 7255.9216 9987.468 5538.0792 6370.1359 4492.938 14604.0825 5365.9624 18561.1578 6756.7269 24828.3988 8117.3269 12297.0912 6503.7693 2258.7037 9536.4601 209171678 dsra Sulfur sulfite reduction NA Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 91428.687 32498.2893 124014.2571 51430.9371 21670.7995 49711.1482 83178.6408 429414.1658 226303.8846 93138.092 65709.8798 52498.2612 991896.0129 64504.444 245594.7657 103524.2801 80500.9453 80500.9453 65451.6977 129153.6689 63149.4221 358062.6354 168073.0563 156536.3222 106643.4767 39607.1493 58305.4709 45806.8876 172227.5253 83208.0952 75459.7234 83338.1236 62843.5909 73492.3521 38538.2385 140057.4214 261366082 arsc Metal Homeostasis Arsenic Detoxification Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7957.555 43253.4941 22751.7503 9666.6327 66996.2694 6268.2949 10051.6561 6216.1133 71147.5667 6527.6872 11389.8955 3652.4147 3652.4147 5495.3035 10082.0845 8610.5282 9432.693 10247.8182 6445.9024 23749.4788 4287.0922 19311.3188 9980.652 36715.2872 3431.0557 4765.7423 16082.8856 5368.3433 5572.6686 217506425 nosz Nitrogen Denitrification NA Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 27150.8326 16924.785 5574.3058 19398.9607 24808.0862 10462.5835 7248.1243 17132.5599 23456.8414 20771.1962 1065965.0507 18685.778 72462.1067 20089.5697 9817.1159 9817.1159 10309.9102 39700.494 27367.8836 11237.1833 26350.6207 22308.5017 10901.0837 15313.6054 21826.1662 101557.4965 93632.3881 106787.0404 31003.1464 10580.0799 15840.0846 57568.0926 11877.9908 341081.9737 298515449 rgl Carbon Cycling Carbon degradation Pectin Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 14129.5914 4783.9841 13874.3439 9073.8283 30034.3735 12369.9673 5489.7693 9288.5288 9525.13 8857.9499 218274.0847 11218.351 12020.9058 11379.5368 8287.5793 8287.5793 21660.6726 16448.3452 20078.2039 22750.7688 12273.381 12475.9805 6604.8795 15748.2431 44426.219 7360.3247 22529.0452 15225.3494 35794.3623 11504.722 36626.0452 15712.9718 20729.9482 15741.5856 72123018 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 7250.9225 5801.6147 19282.8499 5834.3594 7450.76 6065.9317 7257.1692 7006.7997 166836.5393 10809.0405 10562.2996 8948.4949 8069.1786 8069.1786 3801.8444 15811.9023 13067.3665 10978.7555 9748.3084 12550.1548 18806.8426 6637.7117 9705.279 6822.4574 24797.4517 13806.0303 6743.5051 6915.6771 9949.8558 7270.7352 23553.2237 111220842 cdh Carbon Cycling Carbon degradation Terpenes Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 119898.534 50962.9154 54111.3015 545637.8109 242167.4144 97284.6309 83385.6394 129439.5149 40454.8299 70251.9056 73985.8883 53073.6415 2181919.5266 113542.6281 133921.7385 85697.5448 86400.2831 86400.2831 87755.6967 130047.9204 66120.9936 89270.816 91115.3462 141527.1733 45741.4424 47058.3845 86105.3281 68144.4769 174065.1254 63271.2211 131430.0929 88600.359 56416.9262 285939.4046 47251.1162 125054.9268 385763585 dsrB Sulfur sulfite reduction NA uncultured bacterium ws020C1 superkingdom:Bacteria; 178623.8526 91291.3481 54766.427 76231.8919 76986.3994 89120.5527 26973.831 105007.6056 59531.5528 89202.7121 90799.113 119515.0401 2826671.8601 88753.875 107328.5784 180645.477 130095.0787 130095.0787 70274.1497 66592.5486 40159.5272 46707.1296 80938.8225 42753.2318 36720.3702 67790.9329 64348.5703 43651.4919 44292.1114 49775.8479 80322.7055 48137.4743 58900.8754 66090.3645 68708.3498 63123.4128 326207636 ppx Phosphorus Polyphosphate degradation NA Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 19258.1855 15330.0564 10698.1489 72911.954 14641.3158 4778.3251 38969.0916 6020.2406 9670.7571 13673.1948 39130.0704 291169.7771 80770.1917 21599.1508 28442.1902 31973.6154 31973.6154 7928.271 22444.1192 16972.6534 14641.1012 13554.5778 15130.7454 7012.4559 10941.3018 22285.2061 6867.6257 28851.1536 17771.1502 22759.6425 5732.183 12609.8859 13789.3723 10762.5863 48710.08 340533317 cysI Sulfur Other NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 4016.5252 11079.2455 11171.6816 1859.1236 4108.5697 2146.0326 74692.9984 4038.3461 3712.1077 3565.4062 8999.0288 4001.0483 8735.4816 7656.3688 7998.1479 3118.262 2889.4187 4924.1932 9523.4571 3946.4741 10921.7139 3083.5756 4352.5165 6131.6662 2110.5849 7455.8443 126709769 TIM Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 181186.4249 11836.3151 583786.3777 263095.2494 76226.6022 20631.466 46251.4851 201265.9934 175632.2628 158993.0435 119470.5634 174926.475 2466368.9317 319312.0159 605628.2448 818098.7291 143707.1597 143707.1597 436372.6972 323281.5697 98641.9133 124839.4765 311120.7238 1938187.1141 115365.4957 117620.4401 172664.5306 89569.6807 270629.8057 140364.8893 409742.544 105419.8156 104700.9748 168661.1807 72618.8314 159852.9869 340526638 ara Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 10247.3026 8554.4053 12404.3908 3720.7295 2736.4246 5041.6747 5881.0512 4136.526 158685.0882 6279.3435 7727.8437 3844.5645 3844.5645 4261.8982 11310.4248 3923.7436 4842.1251 14740.3914 10246.8091 3313.2986 8886.1652 5315.9586 4525.9578 16957.5061 6319.3351 16271.633 2003.2381 4662.2097 5734.1852 5301.8096 5889.6448 338783338 cysJ Sulfur Reduction NA Achromobacter xylosoxidans AXX-A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 53195.5083 20947.0491 46958.5068 30239.0129 17986.0113 17156.0975 42336.4576 32459.3383 59799.1331 43417.6587 56686.0617 850305.1658 43328.8146 55714.4114 37552.0574 29192.261 29192.261 38525.1311 43909.5278 30317.6386 133081.3191 43586.3946 55422.4035 20432.1684 48867.5169 41680.2361 21843.1857 52300.7354 56941.2311 76438.6628 28086.2334 38986.0533 51880.9368 27911.7991 47519.0225 56112339 tfth Organic Remediation Aromatics Chlorinated aromatics Pimelobacter simplex superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 68280.2938 12818.3253 89447.0777 18869.3785 43534.6795 4713.8746 17147.7317 38526.3579 13266.5135 17762.876 43299.2383 25472.2396 524296.1868 21796.8804 29989.3466 41942.7738 25987.9877 25987.9877 23545.6216 673715.4572 37962.8267 58426.6703 50730.9421 41695.7049 32812.5937 28647.3408 32960.8553 37154.6054 85273.1729 71523.5229 47730.7963 14212.3204 155583.8904 99860.2397 38605.6219 48190.6566 119478394 limeh Carbon Cycling Carbon degradation Terpenes marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5514.0665 5401.3016 5501.4917 3316.263 2215.1426 4696.3151 4728.0554 3098.9266 94534.3681 6487.6965 3541.3149 11722.8826 6085.3996 4906.0223 5207.2017 4933.9675 2285.3456 3149.3172 7232.8519 13463.4199 5413.254 7294.7278 5495.2285 3679.935 3550.7818 3171.1719 5600.8226 329851777 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 18083.2248 8929.7258 11824.2685 18082.3215 20779.8083 23550.8169 12558.8423 23748.4038 17784.822 22616.8764 256121.2433 14597.9834 70240.4102 9616.0361 7816.2496 7816.2496 13271.1283 18838.3217 479629.6833 23884.1974 12952.2173 20124.6614 8334.301 13816.8715 19026.2792 11808.1819 39742.4409 840131.8915 22760.0343 8713.3757 11871.3987 11823.8544 7600.0288 21008.9083 156857765 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 106592.5392 36684.3982 59323.6149 21780.4133 9463.9994 20551.677 19569.5845 7860.3848 62883.2683 40942.3869 302761.9101 36793.307 27514.7038 73674.9955 47291.0613 47291.0613 26389.8785 56285.2144 17908.434 13802.1214 49499.2777 121391.4471 44545.215 33800.8487 30496.3444 32092.8718 105072.3445 63649.0225 33749.0852 21195.6802 26760.1274 131143.7227 22618.7817 48776.44 354585539 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 5285.1874 9877.7728 5222.8373 12695.0902 5368.7636 6320.9857 7978.5914 12183.1055 6667.1083 5789.7163 4681.2894 118103.6931 4398.4694 9367.3124 20568.1583 6126.5943 6126.5943 2979.8244 7413.5047 6949.4789 7301.5921 5275.9621 4263.4577 2982.6316 7475.8175 8730.1755 4758.8377 12530.8038 4913.9957 12204.7891 4345.4065 5636.8692 7503.1135 5437.9155 8516.1067 219965880 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5747.2914 2601.6122 3629.9912 4015.5791 5757.0387 4274.0352 5739.6045 6528.7389 2690.1266 11366.6277 2158.6586 73535152 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9143.4521 11255.8503 2508.9815 5854.4512 2466.1728 3858.0812 8007.6804 125033.2312 4472.5268 5532.9402 6668.2056 2155.4825 2155.4825 6182.1291 8490.3356 4103.7665 5793.3311 5497.7884 8796.0681 6681.8269 9721.5094 18638.7246 9162.8805 21030.9546 8780.8624 6684.7668 3350.7316 5052.4096 17679.0513 5716.554 5935.2957 297148366 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 5902.1876 5166.2248 3955.8575 7124.1266 96142.3404 3038.2273 6648.2434 5755.4412 7319.8342 6626.1924 7112.5555 2665.9571 13165.4225 5928.8718 5993.0991 3670.9591 4563.7254 2711.3691 5450.4259 300777468 tetx_resistance Virulence Antibiotic resistance Degradation Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 23362.5047 10386.3336 7602.0325 11380.7777 10825.0466 9223.3662 6357.568 10776.2488 13196.7623 5346.2161 251604.7127 11507.3501 15681.8073 23918.9499 4836.3529 4836.3529 12327.8369 31854.2185 14167.3221 21325.0489 22455.4458 20176.7978 7353.2368 7138.4145 13100.7218 6529.1811 27560.4057 10328.8484 14873.9757 7673.2262 9301.5971 10398.2161 11027.4994 16611.818 383774454 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4531.9051 299753.9051 6423.8041 47723.9965 8041.9838 6951.7041 6398.5112 4242.4207 12234.982 6983.6921 55669.4524 6678.664 9840.453 22649.7517 22649.7517 22275.4857 12017.418 4929.9827 14771.7561 16759.2743 5090.7968 26983.0822 8564.0017 30479.3911 4562.4294 13515.3227 8678.7414 9600.8354 6987.9169 5939.2601 8341.0872 3195.1152 9475.4128 336297697 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 19082.3874 8956.5142 11167.3974 9622.9479 8981.6103 8285.1618 6718.6113 11476.5336 15882.912 33190.6721 276895.8943 13333.682 14557.2779 9331.0667 7321.2748 7321.2748 11810.8935 18761.5192 17731.244 12054.8205 28305.5835 23823.8588 8177.2464 5307.3024 19452.2042 6519.3545 24115.5288 11225.8575 21274.4153 6941.82 9675.0553 15324.7444 6669.8074 20942.4564 142586 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus circulans; 12294.6566 10543.8304 4595.198 4655.8158 106988.9536 2760.8725 7458.377 5202.2745 18519.484 66617.0024 12466.125 30996.6355 4870.2737 16742.6666 16742.6666 4226.4577 17333.9517 7000.3199 11191.3015 10929.5526 4272.2597 8730.682 15181.6431 10117.8511 16913.9401 20979.5484 33461.6222 73403.0046 7854.019 12286.2022 9783.6934 4588.4608 10776.162 422314027 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19654.9881 5777.467 63553.3125 7000.7285 14603.0292 16257.0327 10489.4521 15719.4403 9182.7574 299097.6011 20411.5917 14944.7704 7384.1738 8245.3327 8245.3327 6259.5801 26209.7287 13886.5462 10488.8067 20162.8476 7277.7548 5745.4517 16615.9539 20585.8229 60831.0054 599499.2348 19401.8057 24474.9395 7466.9569 194187.174 14009.1199 7243.6953 11500.9268 238706924 nfsb_2 Organic Remediation Aromatics Nitoaromatics Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 6128.7569 4819.4476 3278.7132 4373.8892 3666.7179 8554.5945 9245.9327 2491.6723 85341.9091 5879.7413 6006.5548 2219.229 2219.229 4548.2371 7977.4185 6576.3591 5224.8857 7364.3775 7116.8368 3253.4316 57271.9998 18223.6441 3046.0733 10580.3569 8446.1991 10418.9314 2370.8339 4248.0627 4565.6776 3710.6242 11221.4168 296426505 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9513.1235 5717.7201 81081.118 12276.335 7913.8588 7178.6552 2958.8785 6954.1679 8624.2413 6765.1595 179445.2312 6194.0461 11649.8266 6224.2025 5833.3224 5833.3224 6207.4973 13936.3405 13512.335 78509.7576 20247.7914 24780.1847 17263.2766 4647.851 11161.0955 7481.2058 19860.5447 5484.3166 12965.9662 6197.0359 6318.2257 7910.771 6330.4756 10059.7217 88863733 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 15140.4511 10899.2996 4729.8915 12182.3478 11863.6758 14423.6996 4219.1987 10154.199 8694.4861 6390.2654 179476.9445 10599.8501 14768.6711 11095.8203 7229.8396 7229.8396 11092.0811 17069.0656 9688.664 46818.1549 7162.221 9765.3927 8772.2735 4172.7685 10503.7044 8203.7903 15894.6842 7107.2766 12388.2503 4538.6023 10234.8652 19972.2701 3890.3356 82012.3635 269096354 cellobiase Carbon Cycling Carbon degradation Cellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 24164.8697 24638.2478 12629.2887 11533.1619 9180.1271 8141.4257 9587.2832 8578.0468 7128.5106 8407.8309 15131.8261 279121.0978 17614.1865 46808.4948 17466.9087 12364.534 12364.534 8444.3137 44646.5756 9810.4361 11994.532 12984.4789 344026.7398 7475.0647 17161.8285 12290.3764 9758.5774 14884.0937 17664.4295 20071.2671 385655.7563 7761.484 28848.0978 22022.1311 8049.5629 239927944 urec Nitrogen Ammonification NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 22175.314 32547.8898 30653.2782 15891.359 8447.6296 16223.7827 28379.0159 29297.3349 28468.6125 32253.4732 13056.0425 469719.9816 71935.4231 29599.6819 54907.7216 33378.5839 33378.5839 14767.8728 82900.2662 20910.9782 36189.9313 22715.5885 19329.6619 14926.6763 23190.6164 28948.278 19500.5371 43454.9175 22265.195 41516.9963 22747.6558 16853.4832 25452.5539 14085.6102 58683.3408 211587109 exoglucanase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 12152.204 5842.3226 12495.8807 18561.7192 4857.6437 7412.2078 23881.6608 3633.8837 6229.3182 10370.7817 7480.2369 159490.9934 8937.1133 11151.6507 9699.0692 21314.147 21314.147 7241.2967 19056.4173 13384.5018 48462.5042 31028.5156 15902.1137 3792.2442 4727.2732 14067.23 5620.0413 19096.6101 13900.9517 15781.8177 5173.27 8412.7246 8327.7656 13887.0831 10122.6506 310758154 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 6344.6429 5257.2846 6918.6658 4971.2255 160295.8648 6577.9185 4368.0722 2691.5974 2691.5974 4548.2593 7380.7277 5160.5073 3916.365 5415.6663 13123.0562 3593.6254 2354.6944 9577.0932 6599.7806 7794.4833 3302.7263 4490.1236 7544.6961 3836.0879 10198.0904 90954563 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 44048.219 18089.4777 12268.2278 60085.3792 6679.9326 9083.8981 10759.0873 13667.4231 12405.7597 133838.8594 12067.9269 52059.0857 14452.6467 16194.9939 16194.9939 5158.8587 16455.7273 35683.122 6032.3874 69463.696 8865.8858 4797.6501 10918.8691 44418.1633 6406.2192 80202.3002 10679.7375 21638.5203 6633.1881 7128.8802 23277.1158 6710.3523 8929.2606 85831632 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 5381.5649 7331.1035 6018.3259 3987.9492 9777.72 2909.266 53969.5635 5597.015 5959.6614 8642.3896 9076.0827 9076.0827 2551.4092 7548.434 8987.6981 7877.241 6767.5437 2889.7408 8408.4802 2330.8096 47939.2017 6429.2352 7921.6587 2083.481 2596.1564 4576.485 13425.6 91807184 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 13852.2161 31032.3864 14946.5463 29195.3652 8901.6364 12855.0819 17177.3007 34417.8604 14473.5996 17613.2336 16329.5975 274789.9077 21775.9476 24797.3231 12327.0927 15525.5971 15525.5971 122729.6737 16431.8376 10598.4171 16688.9505 14083.883 17995.6619 8506.5157 10537.4901 21692.8298 8122.8927 37909.8177 12234.461 26515.1313 9395.7518 11564.751 74467.13 9719.7825 13214.0684 2865165 endochitinase Carbon Cycling Carbon degradation Chitin Alteromonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 26595.4373 8519.3863 17901.2477 37571.9275 8369.4728 21942.4453 24008.5552 10848.8752 23078.8669 24911.0226 7588.6906 456529.2351 32850.4965 225957.0853 18217.7979 9497.131 9497.131 13280.8768 45186.0362 28290.4969 24306.5994 26816.8681 25547.2706 9145.5961 11601.6377 37952.559 15345.6402 46247.0616 16154.4702 31416.7644 11744.4557 14243.2079 18340.2918 9598.4398 25399.9417 71914716 chitinase Carbon Cycling Carbon degradation Chitin Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 5447.9903 15555.0573 4519.9838 22215.9963 3423.3212 3746.5955 2107.019 3024.1178 2651.889 115329.5567 7523.1641 5624.842 6998.9427 4603.2868 4603.2868 4638.8889 3775.5482 73278.903 2503.0052 2647.9951 8413.9772 2782.9445 8992.9371 5609.8911 6965.2716 2954.9361 3911.0662 4544.733 2281.4206 13446757 nbzb Organic Remediation Aromatics Nitoaromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10868.7618 5561.2863 7408.5658 5300.4519 9753.657 15608.1717 11607.5869 422069.2012 8036.0638 5420.8157 13138.2521 7814.3444 7814.3444 6023.2083 20804.3932 7618.714 21706.3755 7988.7798 4736.6162 12409.9101 6671.1326 9925.851 24627.4573 26745.7902 27778.9612 27328.4779 8101.0265 11341.5938 105272.2936 6865.6114 8804.6092 27804762 amie Organic Remediation Aromatics Other aromatics Bacillus sp. RAPc8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4293.2559 4481.1455 4736.6516 4129.3104 3149.3277 4625.7512 109276.5744 6462.5025 4813.8318 8338.3984 9077.6712 5509.6654 12645.296 4550.648 3415.6696 7443.9651 2399.9899 12297.0105 8284.6774 14236.6469 2438.4036 4373.5381 5008.8672 3177.3189 5314.6779 78102419 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 56316.678 26972.1898 111380.6509 18843.5206 32929.0114 5525.5049 103870.0228 81965.2949 116211.8468 31816.6065 40655.1576 56367.7246 1161733.0563 38093.3777 112408.7959 99471.9308 41090.3028 41090.3028 127783.572 86751.0849 46024.1394 83635.9792 154149.741 260601.7317 41773.1387 27790.9027 36848.8631 61326.7349 685234.7014 65399.1564 58551.3813 27905.289 46700.3589 43665.9966 39471.8639 31308.7868 385843024 catechol_b Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone 23CTD superkingdom:Bacteria; 10181.7265 308739.3107 175363.8421 4867.9139 9268.3847 7222.2506 9557.6647 7159.4638 137970.6677 6824.3955 9892.8709 10261.0011 150364.7163 10983.2412 14763.7938 11411.8701 4910.2816 4910.2816 5381.0259 15072.873 10622.7531 99644.2437 11456.7247 15253.9033 4050.1715 4424.9544 12813.0815 6872.2638 19186.47 9536.5058 10942.02 3224.1144 10667.3538 24127.4372 9767.2282 10506.0365 372474791 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 10572.653 9969.4023 7114.2847 19698.5013 4871.987 6759.4778 24052.5878 14298.9703 13544.0171 17241.9571 27051.277 251304.8905 16034.4979 14281.593 6907.4492 89020.0118 89020.0118 5580.8382 10300.4686 8710.2032 8192.6378 8622.5125 14189.1675 5499.493 4713.2147 13783.5248 20306.3627 19391.7397 5867.9588 15766.9844 6314.0577 6640.6841 7157.9125 6706.7438 11905.5248 359776521 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 6119.1605 4745.3935 13857.2141 15797.5654 6814.4782 19721.0201 4739.0374 115478.2046 6040.1832 69108.2077 7950.8323 10620.8008 8297.1762 47419.1508 47419.1508 13979.2977 7062.4822 6349.4188 13733.8733 6510.1806 3750.2657 5623.5799 19454.3423 7515.378 28025.2001 17726.9357 11866.6929 4151.6799 4247.129 18119.0511 5834.0696 325917313 proO Organic Remediation Aromatics Other aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 13821.8232 19116.8565 24365.8331 8120.2872 9344.6199 15746.1361 9962.6207 12180.2773 89538.6551 8689.9317 293744.2056 19483.8032 22665.2128 19755.7158 9146.6361 9146.6361 8185.8838 23604.9624 13377.0388 113596.3943 74126.2876 52267.0369 6975.6318 8886.5838 20651.8076 8177.8757 36165.3924 26951.0157 48143.56 7817.1354 14359.1192 18349.4382 14422.5737 23199.6621 104304133 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4057.6601 5228.5037 3535.975 4490.3465 8672.8341 16936.8181 85704480 urec Nitrogen Ammonification NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8912.9214 7704.5445 8972.5129 9104.3081 5704.0964 7565.8064 8750.7153 14231.9645 11274.3226 81417.0892 12877.3062 6403.693 3874.3295 4758.6369 4758.6369 5919.4744 13274.5404 7758.9296 9363.3932 9975.4605 4311.3191 5461.7952 5750.6153 9050.3862 4678.5738 22238.6922 7707.1308 12940.0509 4439.638 34253.3295 13791.9387 7123.7405 10854.2366 127511600 Sir Sulfur sulfite reduction NA Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 11722.8426 6259.9998 96840.89 2275.1016 4562.2308 5780.9465 8200.9088 4906.5612 2006.532 11903.9176 9314.1373 6724.4785 6724.4785 5266.3512 13971.3515 4891.8875 14964.6177 9121.1599 4759.1653 2870.7291 5278.335 51647.2183 4320.7734 18966.8429 9891.4361 11146.5193 4376.8526 14615.9983 13853.7312 5974.1497 9030.2093 361052732 pgk Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 48255.4677 89534.0001 4549.7365 9203.1395 2275.2347 5194.99 5124.6682 8407.7857 4215.8694 5513.4855 94846.6176 11335.3885 11335.3885 6354.2882 15207.9488 3793.1214 5904.1414 14178.1543 3159.5762 7549.801 12681.7659 7879.0724 26655.6431 7571.3958 10175.8003 3355.5998 4243.3626 12015.32 81911.069 5671.0061 305659029 amyA Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 16303.2663 45114.6278 33279.1952 10474.9405 11068.2373 13396.9796 11022.4986 11518.3909 132757.2682 10350.4792 32207.5256 128740.9398 15946.7359 15946.7359 6382.5857 20287.6017 7301.19 177627.8758 11735.8907 7975.198 6737.5276 13419.3036 12714.6042 5284.588 30149.1632 16380.6665 18853.2972 5975.5682 8730.7287 16091.8996 4974.1394 9939.6686 29466080 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4448.6152 182620.0563 3546.4872 25966.8292 3952.9671 2826.2552 119384433 PRK Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 36483.6662 16892.5274 9083.7082 59570.2953 7608.4 13535.3502 24529.9462 52860.3882 29098.8065 77490.9343 20509.3255 780331.6038 19707.0768 56450.1622 47647.3144 28159.2807 28159.2807 21562.9119 88412.4261 24173.5087 19473.7834 42049.0636 19955.8902 21374.0213 14180.9227 22863.9139 37270.8787 92860.5692 40456.7716 27349.7004 36445.9094 23369.9306 26065.7346 30871.2674 125883.2825 153888844 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 16142.9616 53260.2757 4990.3007 11310.5374 11677.122 5016.6222 16468.5739 3879.4093 9436.7051 9874.5761 5700.4963 121235.5339 10727.4673 44592.2933 9632.9604 12420.6275 12420.6275 4992.78 13515.0667 13634.5262 10681.9773 9801.0865 13138.4253 4511.8254 8716.4862 18141.4538 6161.1259 44653.9513 5438.2766 12962.602 4643.6346 10029.0387 12612.3672 4639.1505 17238.1974 32527251 nosz Nitrogen Denitrification NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 27040.4761 18103.573 26608.1697 57886.5293 40494.7319 21249.6363 19128.3344 9090.7968 16510.6136 21991.8936 15801.8011 408086.9209 26358.0058 21692.6845 12700.3271 18118.1401 18118.1401 18278.2856 42814.0797 26356.8453 24880.1523 26558.4473 29961.2212 15129.3125 11896.3467 37995.608 13015.9671 50570.7745 43614.1625 31248.1322 16722.1294 19560.4979 19468.8965 15125.0038 36141.8171 111148956 alkb Organic Remediation Other Hydrocarbons NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 8418.7972 4179.799 6071.7934 4998.3491 2887.159 6850.6521 6246.5743 71550.5623 4560.6458 9854.4343 2651.8156 2651.8156 2595.4528 20073.0614 3483.4322 3991.5151 4573.316 6549.524 14862.2904 18181.3524 6190.6006 19662.7706 6702.4463 7355.728 4521.6274 2922.9289 6272.3395 10563.7691 156109739 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 9295.0946 4098.2058 4836.4669 5114.4873 8561.5216 2792.3437 137952.5042 6267.8422 6201.923 6548.2555 2761.3234 2761.3234 4083.1103 11451.69 6293.1812 13699.0041 11435.1769 8091.4974 3090.1767 6494.3886 8670.0596 5512.913 13387.7359 9571.2377 14512.2187 3856.1186 5141.7564 6690.2148 3261.7576 9627.3497 183976708 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16214.3256 5548.9639 7636.9872 4948.4528 8734.6943 10832.1772 9523.483 37148.5808 10609.4306 11471.6452 270916.0014 15916.2483 14002.4073 15956.7812 6016.3922 6016.3922 10502.9164 40969.5085 10704.2619 13618.8417 28297.3734 17991.1952 6064.3791 9985.4069 13051.6202 22119.484 22882.6573 5897.3695 15500.8484 7562.2244 9552.9563 10850.9968 10850.6711 13808.8833 294768302 hzo Nitrogen Anammox NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 3937.1765 2235.259 15399.8511 5676.3019 4559.8423 3972.2411 3883.1991 5473.8557 380512523 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 25647.7963 10271.3396 6336.4986 71770.1578 5771.6614 7400.1777 18239.8578 12699.8664 9677.005 18149.1859 17170.8548 417599.0063 13636.9658 13417.1723 51296.9252 14723.5888 14723.5888 15030.5701 31095.491 75154.5333 18867.8824 24249.911 28153.0353 15990.2671 16959.3021 24894.4263 38470.1954 44755.8769 160905.0271 40564.1144 15197.7412 30388.242 20114.1467 11249.3749 14957.4187 335880869 ppx Phosphorus Polyphosphate degradation NA Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 5480.4149 2837.711 5107.7095 5347.2463 3035.794 65206.9365 5429.4033 5549.6963 3097.0268 11159.1293 6532.5478 4864.6776 9817.0645 4183.4583 3217.8688 3534.9303 16829.8627 6107.8178 6642.9198 2549.7241 3969.3799 5447.0906 3775.3515 6390.2266 352682225 alkk Organic Remediation Others NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 185407.4749 70703.5192 54188.1197 75543.0284 111577.6329 48306.9225 145741.7349 86782.4637 158507.1192 54324.5437 165612.5774 41292.2517 1237451.9285 78084.5227 98389.0975 53813.627 70922.5263 70922.5263 50332.2987 81207.0622 105255.275 112618.3239 206897.9267 110197.6006 34669.5466 49823.74 79192.2203 55651.1554 150314.4839 125393.9654 86313.2817 89757.8444 49725.5304 93934.2853 39952.7099 76984.1615 88865397 phn Organic Remediation Herbicides related compound NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 39586.6565 168936.0528 32058.7917 19290.7735 15137.9394 20128.9884 16818.8588 57686.26 30968.4202 29000.6396 56221.2741 26143.9045 957896.9117 60299.4333 114201.1883 52971.8041 39057.6439 39057.6439 32877.5267 306109.8052 29561.2519 30193.9075 53170.5866 29903.3745 28472.1985 33202.3497 45820.9733 78926.955 82257.1337 37044.2249 63635.6345 27471.4266 138302.0284 48352.6111 29133.1917 81348.7412 170659076 atzb Organic Remediation Herbicides related compound NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 10739.8631 5409.3399 4669.542 2209.4269 12285.4309 7010.4307 11259.7111 27718.8038 17280.441 4347.3938 18429.7895 18429.7895 19604.8819 25164.1674 8552.3834 15032.4542 4531.2985 4504.9502 7791.4703 4349.5121 13704.6993 19242.1224 14460.3927 8187.8798 7657.035 5320.4152 8617.9501 6063.9644 7022.8043 6306.1797 293326315 amyA Carbon Cycling Carbon degradation Starch Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 5239.1792 145046202 mcra Carbon Cycling Methane Methanogenesis methanogenic archaeon NOBI-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanolinea; 7090.781 1806270.4781 721447.2271 6296.1574 14213.0006 4659.6241 101659.7145 33896.549 4581.791 4581.791 64639.9804 145013.0029 8843.0993 9840.7415 7589.8494 4435.9381 8636.0489 23665.8553 124610.3348 22635.4341 16416.3344 33338.0333 24881.2456 18484.5004 3644.5432 294677380 amyA Carbon Cycling Carbon degradation Starch Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 41002.4749 136141.3333 22743.1629 60226.6939 23537.2337 5538.4208 24691.1395 36263.4445 17169.6136 1587791.0049 17630.657 38230.3279 14413.6201 24105.6145 24105.6145 10311.0107 59267.9463 14733.1032 24586.4862 32566.288 21767.7554 38237.8478 56070.4961 48777.3286 18573.4877 68080.1408 47450.3376 45700.9446 14007.4693 16750.7541 27221.1508 68589.3242 55969.1005 383491911 pgk Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 substr. PCC-N superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 5146.262 4990.0648 2628.2755 2242.3585 4213.9344 8180.7809 3967.8287 6472.6183 5606.6171 2338.1772 3138.5818 13381.3554 5648.0283 8600.0201 2296.8026 3029.0704 4776.4959 6121.9192 46117194 pme_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9000.1803 8658.3064 8148.8385 12443.5505 4355.6095 6285.3137 8344.601 3439.8268 228648.9574 8136.2071 7656.6788 3082.2178 3082.2178 7758.3387 12747.543 8792.1777 10822.5638 13866.7925 9166.5612 7429.1442 4485.7437 11157.8684 4733.9874 14430.8364 9436.5929 9264.1102 5347.6394 5878.3089 8746.5884 12221.1901 12018.0415 163746652 pgk Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 4302.9188 4082.1228 4449.7012 2234.4693 2926.2445 3840.9699 66347.4314 4758.1197 4735.1195 7933.6853 5766.4133 5578.3682 10737.0637 5661.405 4128.5973 4170.3648 3500.9845 2662.6014 9992.5786 56677950 PRI Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 4302.0091 2562.5361 21810.7448 5982.7369 3791.3918 5818.4008 3907.4045 3091.1763 6305.1732 4491.3824 5104.7991 6198.2213 3205.8453 8676.9083 4798.8052 4890.4141 3564.5592 4323.5742 31345.2469 6886.1926 198283059 trze Organic Remediation Herbicides related compound NA Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 4784.8037 5211.7046 2482.1253 4605.4372 6801.8144 2824.6365 6244.6416 4517.7418 2279.5982 2279.5982 5287.171 8761.5726 4897.2746 5587.4615 4733.6722 10033.8121 3102.4248 5820.9872 5662.2444 3590.7629 11901.0136 5361.3551 8374.3973 2343.5907 4497.3839 4771.0897 2464.806 7770.163 247537338 pme Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 4919.1757 3360.9183 73358.6444 6194.2051 3786.5896 4451.0899 3873.2324 2877.0302 10901.4841 2371.9211 3511.5781 2415.6688 325555524 amyA Carbon Cycling Carbon degradation Starch Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 56817.1699 18660.9335 40355.459 53727.5149 32483.6612 17520.193 35310.9381 198293.0177 28437.7965 49192.6585 43225.835 134250.6589 1337827.1015 42189.1934 68383.223 328508.1036 86148.5966 86148.5966 57281.4455 74096.4887 86547.0722 164925.7051 59053.7387 44507.0629 23791.7134 29824.3523 27361.4665 33919.7072 109614.3688 49773.8261 94388.1431 27613.5519 33249.9023 45905.8317 38407.3406 35956.8693 124009012 amyA Carbon Cycling Carbon degradation Starch Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 19384.729 6248.6331 89682.008 25227.1986 7460.14 14196.6151 19598.3098 8575.4699 10969.4469 13275.182 7765.5998 557398.8714 18293.0464 9628.9075 14417.2648 10424.7722 10424.7722 12265.2993 28213.8819 22569.7944 25062.6475 17911.8525 22186.54 12196.5545 19500.6627 32171.5543 8132.1753 28102.4607 17488.2275 26064.078 11708.4642 12792.5047 14057.7148 15263.7824 17672.3297 67782666 dsrB Sulfur sulfite reduction NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 5187.2009 4973.7399 3665.5038 5895.3335 5330.7576 97708.3722 4311.3511 4566.6083 5500.1789 5500.1789 3831.3547 9986.0722 9305.5413 4735.0166 7819.6231 2770.5601 8417.6951 2772.8722 9433.4658 6141.3208 9235.3678 2699.3893 6681.9236 3448.1534 3614.593 5380.8012 392956305 nbac Organic Remediation Aromatics Nitoaromatics Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 5362.6169 7009.8607 6399.9712 10907.1749 3566.3156 3037.8987 5817.3359 5995.3345 3170.3536 177042.4331 6457.7188 6503.4253 4530.2827 4530.2827 4696.1948 12112.9986 6032.1587 9593.4759 6586.9988 7704.8967 61579.5102 3412.0136 9726.4518 4130.4968 15039.8251 7092.9165 8331.2353 6111.4493 5003.9596 12079.7694 4693.9652 6834.1092 382946942 merb Metal Homeostasis Mercury Detoxification Mycobacterium abscessus M94 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 7317.1481 5344.2189 4522.831 3160.7281 3759.2895 4416.6806 5912.5891 3496.6124 2480.2593 2480.2593 4192.2382 6420.3783 4289.654 16986.7703 6194.433 10688.5447 3588.9688 8040.5619 3157.7292 8776.0378 7805.7498 8548.7798 2024.609 5572.3972 7970.6123 3088.2756 5898.7653 5453455 mnp Carbon Cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 9387.7549 29075.5574 16000.416 10543.5022 37695.5994 4719.2277 6672.4102 11014.4163 13391.2815 745618.7971 9674.5308 19816.7247 15707.5644 11748.9902 11748.9902 17445.534 13278.7255 9422.6626 11239.0492 9291.0582 8732.2031 7376.2539 11104.652 28431.133 8009.5538 33358.9678 19899.8033 29779.0724 8593.8647 9934.1469 16426.5062 6521.098 14251.6819 337269596 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 1085911.6358 2314937.7368 12914.7052 84267.6845 22342.6942 7429.5495 177198.5407 3090.3225 8207.3543 12020.3257 8245.7927 292494.4535 13236.3886 46731.2046 8631.0101 50265.6069 50265.6069 36598.8989 112838.755 11193.3275 47609.139 17326.2085 42403.9499 9523.7177 19517.8664 22414.8961 8442.5295 58952.3418 41196.5159 31756.0956 17228.9904 12234.9533 19713.9133 7717.7 324316161 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 7783.6536 18217.0439 17938.4962 4530.7786 5978.285 2421.8243 3097.8397 41719.3504 6294.2981 3995.7662 139628.4129 7096.7042 3851.1904 2764.6601 2764.6601 3373.0517 17730.992 6541.7048 5975.9732 9148.6605 12154.6928 3717.9244 12736.0994 5521.2148 16865.0355 8381.8726 11890.782 4685.243 6493.541 3983.3463 4588.601 8891.2538 59044731 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 42966.099 3148995.5899 8646.0884 617053.5271 21953.6469 11737.3851 20145.3404 23919.2015 10684.0406 27930.5759 39002.7159 333095.6415 18160.7172 21956.6023 11401.9942 18092.6951 18092.6951 178030.3184 299043.5067 22490.1748 14870.8206 68418.2031 16005.2775 49422.0395 27413.135 63964.245 43990.0334 114771.8186 71767.3865 56435.7623 39302.7688 37690.007 83446.2947 15017.1694 755119.6295 334881167 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 80946.1075 28544.9893 8607.581 25738.935 6624.119 7445.0457 19080.8307 17064.8338 18931.5185 77411.7239 21082.8352 340368.8738 17406.257 34898.8084 20848.1463 31105.4831 31105.4831 22321.7359 41456.0564 19709.6977 15795.416 64768.7978 36233.3081 28863.3342 21515.1521 26263.2461 62977.9875 49288.4749 37468.2332 31764.1309 10458.8693 19783.3323 45337.5197 19754.2213 35387.9391 59712161 nrfa Nitrogen Dissimilatory N reduction NA Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5408.7915 3481.1193 5439.2221 4442.201 2751.5143 3449.885 3460.5191 189210501 lactase_fungi Carbon Cycling Carbon degradation Lactose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4386.1118 13195.4096 2061.8661 2602.8073 4347.5697 81965.053 5330.8715 6138.8235 6225.7071 3694.8538 3694.8538 2671.8534 3902.9108 5426.5735 7591.9872 3205.9981 5070.9975 2984.0188 7836.2236 3743.183 6982.6656 2372.2915 3639.582 5442.0296 164423719 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8417.7384 3435.0669 5252.9523 3001.3357 7014.6 4809.3184 91454.3997 151569.7914 5840.6871 59347.7612 3406.9252 3406.9252 3153.7077 7729.0739 4459.173 9830.131 6914.7007 4765.9041 2564.5515 8697.511 2991.5992 11510.284 7954.7595 9180.4998 2671.2666 4367.2498 3314.6681 4223.1183 4544.6353 84665878 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 10157.9781 19779.5334 14330.2245 359694.7608 16285.2154 14640.4731 114156.5886 21425.8164 16569.4413 16366.0158 12268.1969 670399.4526 35866.282 21054.4224 29416.7249 28615.1577 28615.1577 10099.9671 33563.4849 10726.9145 27376.9427 19182.2777 17848.9346 12959.9987 15108.6654 34465.2616 25540.6701 33293.7108 39138.428 22874.2206 15403.1751 19084.4893 12499.9556 10683.1581 11688.8216 294012888 ppx Phosphorus Polyphosphate degradation NA Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 9846.4154 7403.2833 3815.4157 5525.0664 3253.0068 9634.2222 7557.4223 3354.0097 59537.7029 11692.5428 6378.9468 8909.2083 3116.488 3116.488 4752.9654 9397.2175 7394.2827 6438.2765 8866.9125 10575.7145 14090.9781 5355.3534 9634.2497 3707.2841 14087.0388 9954.436 10967.4023 5367.4279 4738.6663 4890.2335 5453.8849 13481.4026 317502999 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 6070.9439 4805.2998 8169.4931 4503.5279 3987.065 4434.4422 3917.9068 77306.6632 5073.6312 4714.0579 3496.3187 3496.3187 3041.2004 11368.5533 7146.0526 6867.8517 5930.2077 3894.0591 3466.4638 10898.4411 10334.4862 5428.3953 8791.116 1945.8243 3488.8494 4266.4034 2065.6041 77378497 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5536.6695 9056.9085 4886.731 5595.6825 3225.0966 5254.9152 102928.7234 4477.2974 4477.2974 3100.1934 10386.1971 7438.0332 7323.5765 7945.7113 7060.3582 3072.419 2973.3654 7577.701 3510.1782 11336.0036 5645.1006 7510.6809 4826.5942 4835.2789 5839.4484 4565.3247 5300.8191 320006837 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 15501.7731 9493.6756 7226.5325 40632.3597 7208.491 4748.4882 3163.7845 10011.6246 14020.1969 11474.448 208714.1442 10566.6213 9709.3724 13808.5042 5213.0325 5213.0325 6293.982 16045.1335 12274.1075 23134.6799 38296.3377 14962.7525 29415.6085 8709.2021 82320.7413 4830.5588 38324.6607 25644.4411 21343.1963 5946.4681 7378.6921 12142.2747 5504.616 28527.7693 253826067 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5981.8059 14046.037 5503.5785 26510.0168 5320.2213 6141.5797 6199.4616 4108.7781 6512.3429 3697.9136 122728.0233 4924.4792 5848.015 20791.0837 5121.8719 5121.8719 4686.5859 17429.5548 7671.9728 5458.6233 4838.4683 10805.7469 2980.7838 20592.6283 9588.9978 10036.4212 4328.3242 4617.6125 6142.2633 3299.8794 4762.4571 345878196 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 6549.8655 7990.9596 4670.089 21725.9867 15345.7042 28379.8639 182593.1412 5302.0593 2210.2969 10038.257 2788.0311 13049.5202 3593.5018 7409.9183 128866.54 163258273 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 30660.4414 27543.1008 16165.1375 16037.4494 68070.8342 12969.8353 11094.8932 17786.4651 27758.1219 16148.1271 373840.4438 56393.4192 20054.5435 17395.2933 14476.4254 14476.4254 21459.7561 32021.2327 14499.1922 43432.1824 82839.9173 19486.8081 12835.0752 32539.5852 37446.3608 44468.2001 96751.5268 33658.1208 29093.5539 16593.0525 20812.5301 42338.8632 16572.2267 19924.9846 88799848 poba Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 11312.941 6002.3747 250000.7043 8209.735 4914.5722 5029.8818 2954.6057 7290.7055 5501.1167 3553.7089 117973.8521 6836.092 5837.0301 1804.7129 1804.7129 3491.1793 10680.039 6619.5839 10073.7308 5092.1049 11988.7726 2388.0034 3184.3859 7593.9579 4266.4872 35510.9013 16101.3414 24791.94 3478.4924 3852.5882 3682.1509 3067.8533 18913.9702 119964059 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6755.4719 6529.5855 3272.3368 2615.2291 7132.8192 5454.735 5166.5665 4371.4193 3040.7975 3040.7975 7440.7617 5184.039 10922.5042 4821.3832 7622.4236 3219.7196 8267.807 5183.0025 3073.4483 3071.1331 2964.5079 6170.2395 297564620 phenol_oxidase Carbon Cycling Carbon degradation Lignin Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 4445.6114 7091.379 5626.1004 2615.1443 7199.9886 20130.4421 2055.2914 2030.6888 2333.384 5640.7002 332741677 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides coprosuis DSM 18011 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprosuis; 5700.998 379737882 atzd Organic Remediation Herbicides related compound NA Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 4770.006 18304.0378 7415.6377 3521.7685 2792.0773 2154.1877 3291.8564 2560.8779 57128.9236 3978.2494 4547.6028 2239.562 2239.562 9134.8423 4758.116 4882.3627 11001.7811 2448.7645 3241.8668 2530.6344 10179.5994 5214.4472 1879.8752 3024.7291 3694.8352 2931.7932 7171.7208 62390914 gdh Nitrogen Ammonification NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 10623.1612 7117.3984 3112.4974 152178.2926 41199.1777 69042.4337 126174562 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 14068.7245 2040.2089 2463.4579 3125.9951 3881.6933 4923.6462 72485.1137 5389.3279 31840.5019 31840.5019 2567.2516 8185.8677 5998.8081 15910.6443 30913.3005 5602.0579 3763.0876 6914.5761 3093.1194 10637.5814 4914.2343 7408.0786 3838.1231 5520.8705 5232.8786 3434.5289 6275.8096 85111735 phenol_oxidase Carbon Cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 52002.9305 26593.1999 37102.2 78385.959 10550.3921 30416.6353 23286.6663 14328.8759 22988.5092 43085.0231 17067.2139 776506.0425 33360.3748 43714.8374 43692.2836 23063.3233 23063.3233 18507.3998 43997.5268 29204.7338 31306.7591 36309.7867 35741.9231 16433.8279 16429.467 34240.149 14461.2555 60876.7035 32680.7715 38480.629 17405.6813 33292.9659 16611.9742 18651.2669 44545.432 166064266 sqr Sulfur Sulfide Oxidation NA endosymbiont of Ridgeia piscesae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8535.7523 5475.9996 2262.8026 11187.0872 2591.578 7323.6344 14872.4679 7031.219 59430.0184 5747.4401 4146.6225 9039.9408 5393.0044 5393.0044 7289.2607 18506.1294 11187.7346 5202.9324 6730.6203 7368.5449 4409.5603 16597.0275 97407.5534 12223.8786 20235.4846 12869.0105 16032.6365 4554.2402 7719.9047 10740.1107 34378.4825 116072921 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 26224.4206 7081.5769 9178.6852 26544.0345 9665.7188 14342.3821 5775.8028 8737.3575 11752.5994 8274.8196 214545.3769 11002.648 11180.2035 11260.4648 10238.2726 10238.2726 4973.5806 34933.4414 10298.6697 9632.8803 84608.7665 10189.6879 6717.2508 7019.4683 19457.3327 7356.9376 33062.2508 15411.4648 31074.7323 7093.9032 9421.0846 24979.1555 7571.0392 42143.5982 221070018 fosa Virulence Antibiotic resistance Degradation Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 5844.371 5892.9407 16221.4764 2465.8172 2464.6157 7714.718 7825.191 4627.1437 3232.3816 3232.3816 8261.8923 5484.4998 9002.8709 19005.3457 9226.507 2139.5611 13340.3989 10126.6853 14843.1879 5306.0006 6454.2913 6521.1302 7375.1747 4969.0604 2125.1328 257076073 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 45731.0543 23371.5885 33163.5959 40853.4134 33307.2971 669707.5557 112843.8473 88177.8261 19339.2553 26822.1897 36838.2712 24484.8314 857166.4324 44089.7177 38955.657 36432.1344 24498.2325 24498.2325 23667.047 49082.5655 35110.1672 62440.4005 53579.5458 65439.6066 26831.7302 16922.0755 57134.0745 31100.9794 84358.6824 14649.7918 51592.7613 22271.8361 26058.7785 24754.7386 26219.0869 57819.8196 225645263 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Persephonella marina EX-H1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Persephonella;species:Persephonella marina; 8382.3986 3515.785 14057.0731 2197.6785 71909237 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 22439.054 10291.8024 12995.8802 33469.8239 5403.7735 8945.8622 3278.3849 19502.4109 11630.588 38469.299 151623.157 7087.711 6999.374 19978.1895 9307.0428 9307.0428 18305.8415 22045.3234 11681.0187 13146.3096 54864.6917 21618.4131 9885.1073 11114.1755 11902.7645 13698.6703 36791.2125 17676.1027 20933.9649 7913.4829 12633.6703 13737.2583 17886.4958 18892.6425 295676595 cysJ Sulfur Reduction NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8746.2366 8323.9335 6895.6703 5877.8153 3861.8131 5045.9243 7869.4884 5527.8924 3976.4306 422313.5857 3506.0181 12624.3305 7328.4128 3182.7624 3182.7624 11361.5317 3417.4551 3677.8417 4445.0026 4137.0338 10336.3325 4514.5194 6254.133 30417.1873 13709.514 4644.7663 8421.9724 2789.8956 5765.995 11611.7949 2313.704 107022981 badi Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 31799.1349 24683.2568 53752.5465 10158.9756 9346.7793 11201.315 10789.388 9276.0997 8018.0589 36476.8387 15960.5108 129723.7043 25998.9905 37827.614 116278.3071 29060.3333 29060.3333 15200.9604 20874.41 12635.5287 8678.367 18305.7812 19013.0551 8907.0474 11114.528 15282.387 63387.6788 35172.7865 34130.8224 25515.8774 67394.9693 26177.1314 42421.4473 11679.7405 6441.7995 285026987 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 271812.4333 25686.8702 23128.4757 78259.4434 7309.467 26049.3267 39945.7676 22462.4026 357708.4985 39693.7596 70122.0708 486928.9839 55996.9809 80214.9666 29765.1581 26056.6839 26056.6839 34435.769 75481.2863 32713.2163 47849.0643 90611.4105 92968.1767 28804.8703 28394.0925 65692.417 103253.1123 457017.9294 44150.6117 50328.171 31753.7967 29909.8216 39770.6094 44507.7404 49303.1841 339061927 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 43192.2978 84764.5376 13590.0991 303420.9545 39591.2522 67987.3406 377437.5201 14805.8557 27300.7211 44348.4391 46514.392 158555.1949 40776.6348 27973.7216 17550.2367 22027.1926 22027.1926 52132.8129 61411.131 14561.5042 16972.6602 27547.1136 17004.9226 6066.3449 17710.5088 171126.5961 25841.3179 81697.2964 40098.9574 68347.4065 58463.6911 34122.7933 37836.4207 42066.4703 45370.0823 121495608 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 200415.4717 72034.7773 220845.0769 121310.111 61796.8234 89126.3602 137885.9348 140552.6591 153898.3811 116869.4177 189484.0229 122808.4163 2516678.4396 159095.5023 169154.8867 391274.5009 205242.7344 205242.7344 77516.5658 159039.1475 116120.5495 156799.0607 171544.3446 342452.3718 62636.2635 103565.8154 151304.1888 134453.9496 322144.1605 145000.6781 149945.9732 80603.4752 97059.0779 114950.728 79377.6842 167288.3002 270511764 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 35615.2044 24739.4589 22392.0624 15623.6495 26562.7137 34053.5624 49746.4711 20210.4935 33860.4328 55479.5029 36817.6732 374409.4208 216188.4735 47408.519 25847.7411 30084.0266 30084.0266 29718.178 40864.6602 15499.6881 237240.4925 47471.8081 129299.3885 24185.8954 26294.0629 42967.2788 26022.1385 64356.3154 17914.8875 29467.0746 21678.5519 40646.8336 37687.0277 20290.5404 33957.2773 161502790 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 12528.5541 16012.3671 6480.7926 24560.2007 3522.2597 17520.8231 2669.3923 17561.37 17312.1951 11912.0292 285476.871 8200.8959 11547.9404 20780.6514 9119.8033 9119.8033 4061.9534 15177.8851 7339.4545 5379.3394 9990.2177 9441.2375 7504.244 8724.2048 17395.8819 19558.1469 25791.6034 12331.7279 18888.6495 4940.1655 9306.212 10230.3443 2879.438 9836.4602 117992469 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 23667.2063 8467.5995 17455.5903 4677.6718 10859.1478 13067.6916 39390.3952 69622.252 14001.015 13487.7661 26053.1395 13890.7621 13890.7621 4530.1054 32412.944 7614.6236 10478.244 9793.1867 15055.4686 13867.0536 7771.4626 12577.0142 8896.4053 26048.1975 8443.734 27669.3763 8953.822 7983.0258 22331.2587 4373.9582 13712.2343 296270573 urec Nitrogen Ammonification NA Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 214921.7178 212381.0303 63828.1568 138605.5725 38420.3699 144385.2897 65393.4239 85954.2175 54804.843 85710.4411 95476.5897 1094192.3648 81850.2926 126420.5086 185729.2528 74553.6431 74553.6431 55292.3608 136703.7015 86747.3813 111733.0462 83852.9461 567463.5483 48959.6368 87769.056 135324.3746 36423.794 129533.4454 111956.9233 81863.9109 161193.6521 110999.6072 69385.2853 120607.8263 62966.1931 320151734 nitro Organic Remediation Others NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 47285.1337 15343.3114 31137.7765 42324.5947 35102.7062 5741.8991 23815.0678 33301.4696 20089.5029 28147.0382 28586.4798 30091.544 550519.7324 45782.3812 31586.7963 43139.0474 21012.9597 21012.9597 18446.8908 43275.3168 25127.9821 32729.6296 34415.4414 40006.0289 44016.4204 14675.71 36192.5391 20443.8253 78637.7677 31344.9003 42449.6249 17570.2528 20649.0401 33640.6707 42708.5923 38456.744 386857669 amyA Carbon Cycling Carbon degradation Starch Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 5326.898 4991.1143 2835.5259 69799.2279 4423.4016 4759.085 5243.936 3367.4673 3367.4673 2897.6807 7386.7639 4264.6027 4371.3276 2848.7238 2118.7253 6290.44 4343.5365 5733.5754 2300.1355 3456.434 2136.0465 226946750 ppx Phosphorus Polyphosphate degradation NA Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 5289.2653 4042.1033 9845.2504 4954.0623 4968.3684 5293.1975 5074.2975 2671.974 175377.1055 6469.5377 5025.4506 2548.7708 2548.7708 4426.4542 8297.9906 6754.562 64504.8289 4931.7079 8505.399 2191.68 3056.2131 9858.1122 2786.4295 14067.6866 4441.6515 7931.9442 4011.5934 4604.603 4376.2393 2393.7346 7722.9246 389638230 pcpb Organic Remediation Herbicides related compound NA Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7130.1427 44843.6997 3802.8866 14504.5985 2441.5203 2832.896 2832.896 9148.6602 2543.7781 2487.7837 7922.6076 8998.3255 7339.7374 2499.3663 3770.1045 2572.7267 4381.7736 337279018 SoxB Sulfur Sulfur Oxidation NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 9174.9838 8951.4788 7494.9595 12893.4093 5059.7807 31768.8897 6870.6596 13474.9234 5907.9832 6463.0493 6569.8546 143047.7104 9404.0054 11060.7978 11181.7288 11541.3996 11541.3996 4236.655 10316.712 12837.8554 11828.5971 19746.4194 6119.6873 4015.6339 2993.6498 11737.3066 16728.9613 18094.8374 13454.0775 9611.4142 19538.741 12360.3187 13276.1709 5290.6046 485481.3747 212541773 tfda Organic Remediation Aromatics Chlorinated aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 5051.693 200369.2216 3262.1474 6794.5342 3642.4232 86611.8455 7591.9372 5417.0061 3314.62695 3314.62695 3653.7462 5678.9221 2642.5242 7592.2897 2814.96915 12777.00095 6627.0835 8805.9168 2354.4238 4089.2018 4213.4024 4359.3041 6310.1265 29466032 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8885.6047 158099.7773 13318.7232 46745.3917 12947.2378 4994.7167 8583.9971 16365.7745 6705.9013 116190.4429 8313.7599 6073.931 5398.8649 5398.8649 5480.0204 17772.0119 12908.3131 8419.0945 13532.0416 6812.0573 13992.7388 5189.889 8358.897 5589.1649 26720.4089 4616.3627 10336.8803 7341.1487 6831.5469 10182.1934 8779.0993 15100.0857 389848676 nosz Nitrogen Denitrification NA Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 57039.506 12920.6418 18720.5609 60294.9669 39336.3714 10927.8815 24493.2435 69352.6688 53514.6308 38728.7663 71232.8707 88182.8691 1952168.7936 46094.3735 116961.3827 67314.0735 100929.0962 100929.0962 27051.9811 64388.3985 166872.7485 19863.8775 70961.8526 93830.6587 24356.6896 38939.1176 42385.3262 83872.1672 83360.6581 47513.4354 47647.3619 452120.0503 44680.54 27795.6949 30197.5017 68773.0417 332336143 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 477150.4247 67288.9937 5476.9869 2214.9101 3370.9364 3521.9873 9465.7016 8155.8516 14415.1391 62862.0948 7141.7492 8502.7205 8887.542 8366.9058 8366.9058 16234.6028 21864.5621 6262.7274 14713.5641 30712.731 53989.8625 71695.4579 6887.7324 10283.7804 5668.3278 52133.5198 8765.8493 11907.3723 3564.0571 5557.0631 14121.2345 5526.664 88964.3125 224589198 aoxb Metal Homeostasis Arsenic Detoxification Sulfurihydrogenibium rodmanii superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 29544.8031 13214.0353 12962.8842 24729.2364 43201.4432 10953.9487 14149.371 14759.7167 12402.6601 20795.9899 22064.3025 15965.5343 502647.9264 25741.7161 25309.1474 28329.2414 18783.8987 18783.8987 18375.4371 33280.8962 23624.9592 28729.9356 26346.6984 31409.1552 89515.7598 13997.6414 35378.9013 24904.53 47894.1451 26402.0624 32513.5843 11246.4958 15737.5106 19554.4469 10465.2692 34314.8472 391880288 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 57074.1157 4456.3605 20526.6222 3747.9337 4858.604 7383.1886 4191.8275 105790.3506 10759.998 8197.1992 7635.4294 5110.0357 5110.0357 2913.918 13703.174 3558.5554 7412.359 11658.3461 8151.2035 4522.9491 9548.5146 7248.4309 2850.4607 9304.6841 4857.6278 6451.9906 16937.6175 5601.1091 5366.485 22015.0069 9054.3897 377569809 scnabc Organic Remediation Others NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 22032.9782 25072.9672 8172.6748 5967.7372 7664.6447 4742.4662 16497.24 11105.2066 125883.2399 105352.5426 19930.8082 9355.4806 9355.4806 5319.4752 12679.1782 6039.4541 10256.1795 8935.4165 6010.0049 5935.2928 45598.4431 71261.3513 15466.6837 27150.7536 16798.6 7404.4653 37162.9227 10155.5012 3772.5229 23686.7732 315313634 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 59013.5633 9771.2853 19613.5636 25216.8589 9936.3078 6445.5706 9581.0906 27953.2165 41419.7725 15695.4788 15510.1194 552943.9854 10037.2188 19091.714 90039.2965 51431.69 51431.69 67049.8658 22085.9475 10033.2532 23906.129 27353.814 25117.0242 10300.2097 18310.3794 26044.2892 8970.4954 22363.2985 28662.4327 22411.9126 10777.5098 15793.0394 20575.8381 20481.7623 10844.5 324970585 linb Organic Remediation Pesticides related compound NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 137421.2172 4724.3102 4724.3102 6015.5006 2359.7699 1702.818 329298211 cysJ Sulfur Reduction NA Plautia stali symbiont superkingdom:Bacteria; 61067.7878 1048265.4003 126647.3853 64075.2175 40374.2104 21356.9738 33573.8143 27871.5556 90916.8693 34106.7634 40834.0971 28250.0463 922205.4672 44941.7976 37876.4648 37001.8095 38205.4522 38205.4522 25030.7626 41840.3028 36399.3113 112260.7042 122701.4086 59774.2719 24707.8325 18236.5024 43712.5233 19582.5864 84759.7968 35707.9639 58523.255 17150.3449 30047.8745 32813.188 18330.4341 47072.5467 392848127 xyla Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7580.7164 4906.2628 10450.5161 8078.3963 6073.0127 16985.0439 5289.9098 3119.5774 264556.2743 11555.118 10102.6447 2943.0721 2943.0721 4789.736 2560.6931 3334.0353 3019.4936 12698.6543 8391.8644 8086.7017 3103.3742 5686.0962 8396.6731 3292.1279 6827.0862 85826226 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 18992.0003 13545.5736 39290.2087 46192.0767 22980.2453 4456.3448 16152.7551 16692.1894 9950.2975 29813.5762 15860.4565 11142.0242 693563.5229 28555.3803 26064.07 16283.6286 9919.1882 9919.1882 17393.6031 44313.7766 26276.355 43903.3467 36721.094 28783.76 13807.9801 10723.2611 32662.0985 15192.1953 52936.3902 16341.9706 30223.2838 12878.0044 17465.5254 19625.6631 10243.6389 32907.1772 116098698 ppx Phosphorus Polyphosphate degradation NA Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 9138.8152 836327.2705 1675624.0441 224503.3914 16944.8893 22667.6939 3478.4507 4845.5404 84460.6512 10472.9323 6129.5083 5794.1846 5005.1599 5005.1599 7531.5614 10336.9427 11214.8564 6229.4991 5209.79 3153.9905 5966.884 6104.3073 9931.8687 5342.3667 7148.6644 3024.7002 4975.5561 7461.4869 3672.4898 8468.8379 162707953 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 34716.5105 54920.4882 29692.9865 12063.205 8345.7436 48049.584 48389.1425 58361.7214 20140.456 22903.7971 37080.392 364468.8233 33499.996 34904.6395 94324.6633 30798.5588 30798.5588 11960.7728 42776.2854 21210.3288 12429.6519 49288.1486 19913.9463 43211.526 17474.6934 47148.1213 64215.1717 46861.6522 187913.4056 30876.1274 26986.809 34191.2773 43646.5408 14964.5908 34222.8999 184192713 mer Metal Homeostasis Mercury Detoxification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 57091.978 12735.6845 34843.1794 1917830.1838 79428.9706 151199.361 69853.6553 699258.3611 30925.5226 26176.1895 39129.0522 117383.5385 1258803.5353 78948.7378 163746.5049 559388.7783 370576.8376 370576.8376 43774.2042 92455.0114 68224.4671 399894.8623 65133.7988 57381.9081 40891.2227 45931.7779 85881.8325 36307.3702 109273.4228 63515.1455 68832.8516 159873.9944 39942.9517 81515.6127 27309.229 106311.8168 374376180 pme Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 524077.5165 57113.3278 98643.5151 1639231.7114 90554.8749 1259004.7232 275771.2945 493610.9989 89430.9243 137532.3682 201148.4056 110039.9601 5217865.1265 262890.747 405800.382 289996.4123 226098.3692 226098.3692 100008.5652 231890.5829 104356.7099 524259.4442 291745.2848 164857.957 150262.9217 223105.155 1017097.9547 170824.5091 365082.512 303579.2931 259669.2193 85500.0039 121912.8957 130965.499 361587.0536 713656.5964 73698632 cellobiase Carbon Cycling Carbon degradation Cellulose Alicyclobacillus acidocaldarius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 8544.3002 6673.7334 5390.8961 3605.5829 4789.3984 9190.5746 40034.1945 34458.2039 5879.2767 4536.7519 56990.9143 2261.7905 2261.7905 44918.7512 9321.9966 5594.4503 10102.6627 5430.7993 15014.2564 7254.1902 3075.485 10738.5622 2421.4664 9660.1121 24400.7684 11025.3861 4943.0783 14715.5024 23212.3325 17359.0004 7251.8968 2130622 norb Nitrogen Denitrification NA Rhodobacter sphaeroides superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 5914.6284 381293.6247 33516.7315 29827.095 5018.6042 1899.8042 8644.2711 2276.7054 4767.9218 6462.7306 11844.6893 156691.6995 8145.6342 9359.878 22567.9638 25549.0684 25549.0684 3686.9367 63240.6261 7232.161 5158.1304 13936.2951 9940.7694 9667.1009 24990.9929 21792.9978 22301.0306 56645.4332 17387.6168 26684.4824 5048.4745 7574.6502 40280.2662 11201.0977 218241019 xyla Carbon Cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 11108.4111 2480.2367 27819.891 48387.8917 3470.6028 119767122 arylest Organic Remediation Aromatics Other aromatics Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 8401.4302 25329.8981 7768.4135 13090.143 31187.8825 5612.6767 5612.6767 16775.8082 21138.9973 4317.5557 2515.124 2973.9579 15387.3389 34089.7032 302505952 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 8267.0754 6014.3474 13909.4703 5261.1743 4292.8427 4071.7001 5050.191 4437.782 9330.4324 9330.4324 12147.0906 5004.3464 7023.1293 5535.7087 4350.0523 2273.1468 3594.5711 11647.8693 6010.5195 9741.2834 5826.9268 2932.4793 7114.7754 4352.2227 3330.7178 7548.2637 335439005 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 120519.7184 11383.0276 9279.6245 11435.5788 4086.3523 22346.691 13072.5289 5348.4182 32041.3859 24898.6876 875651.1043 10051.215 10047.217 52623.0967 9351.6856 9351.6856 5253.9649 10083.3495 7884.3292 7313.6486 9939.9019 24312.623 8266.4397 64387.6753 11295.463 6851.7952 24013.7235 9996.9075 14360.0998 8827.7279 8484.4743 14165.5252 166123.3215 11738.0071 407429981 fcba Organic Remediation Aromatics Chlorinated aromatics Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 157581.9315 11335.528 22807.771 29232.5588 38464.0132 15912.0779 20755.4973 121878.886 17717.7263 41191.1962 45083.6165 33192.1859 643454.6397 50486.5039 41385.1078 44880.1546 34748.3673 34748.3673 37552.4681 68340.2445 41031.1944 34207.6061 48858.7759 61387.1667 16907.7324 25046.8275 63081.6357 30007.6225 86536.0152 76582.0266 57831.5098 64575.6014 88622.8065 42199.289 23959.3936 369972.7348 119378072 phn Organic Remediation Herbicides related compound NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 102352.7685 12186.2915 36017.4962 200906.5275 99446.5326 33934.7085 159455.8441 80852.7324 289855.8207 81343.6461 71686.3573 68649.3724 9609591.7157 85373.2039 80865.739 107919.7287 50065.2405 50065.2405 59537.5395 125145.9537 64029.781 998019.5521 84150.0158 77606.7076 68947.8758 65588.949 82306.4126 63570.1528 185396.8553 69406.6919 79955.3794 53841.5685 78473.0039 81128.7179 93162.2225 196414.9672 374922785 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 22729.4998 15495.6292 8269.7468 9196.4718 14287.4074 10064.9587 18216.0907 16377.0138 14040.9091 362334.7123 18728.0844 13420.2418 9875.4456 18236.9386 18236.9386 9127.7455 31734.5334 22460.6523 14796.3497 18898.4765 10281.1979 8935.7518 8981.8058 19692.9317 10273.0422 31553.1032 20918.2766 30369.5519 9713.2623 13602.5454 21516.0652 7791.2794 30754.1982 219852155 dsra Sulfur sulfite reduction NA Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 5202.0943 21552.45 1792.4663 3589.4493 79973.7326 6832.5261 5737.8202 4808.1717 538558.8804 6137.8746 3194.0377 5713.0891 5713.0891 61893.2375 8602.7643 4391.982 101586.8643 12095.1321 5407.0684 6274.7044 6000.8769 4451.9602 16726.915 18810.191 7311.0194 3749.7626 5845.208 22282.0075 10938.4929 4891.3762 78102079 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4499.4009 3299.0727 5570.8567 3013.3266 4694.1975 2313.205 114960.8786 5349.3036 2597.5381 2597.5381 3711.9094 7913.4539 5514.5516 4020.0063 5763.7866 8452.3547 3442.3208 2511.9888 7254.6391 3696.0317 26518.2462 8666.5494 8194.1139 2936.2762 3432.5576 4484.3772 2962.9685 7179.0441 126640997 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 4794.02 3725.7321 3399.0565 5107.2187 5840.0202 82574.2601 4928.3659 7479.7564 2541.1519 2541.1519 3792.4319 6543.8454 3964.9785 8854.8772 7127.7708 2450.2171 12089.8524 6285.0654 35341.1349 13397.3462 6170.6055 4060.6347 2764.7839 4942.5107 6037.312 33243151 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6964.5251 5577.5383 9814.0482 14962.1617 7900.9051 6436.9571 4121.2858 4157.2251 6594.3336 118685.9518 6755.2363 4658.8635 3994.7166 4250.5549 4250.5549 4115.5612 8806.5478 6892.0593 6267.9456 7436.627 12232.8299 4257.3716 5411.2344 11450.0576 5981.1711 13313.9923 6510.0339 10510.9205 7888.3992 4368.0285 7026.9519 2575.6604 5883.3028 334894513 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 37934.8666 47135.0952 90823.1107 36985.6023 234745.2791 46472.6309 131314.7574 38485.386 108907.2662 51866.3792 68758.9147 54052.2198 512095.9672 138470.2716 63275.8107 27790.9323 34316.8114 34316.8114 52896.1317 54649.6006 22433.0904 130969.3474 93758.8998 803128.8804 25864.7498 48996.1282 40483.4855 98683.9074 173342.141 31206.6288 48966.3258 113026.6515 100374.3344 35270.8004 37420.9171 115138.6078 238784693 amyA Carbon Cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 42156.9839 32023.3582 67358.454 38063.5801 58837.8027 11349.8533 41860.557 37625.8549 24018.9474 29283.71 36023.3601 22149.0729 805129.8519 37278.7669 31905.1195 32867.7695 23502.681 23502.681 29466.4944 67752.6321 46253.4656 54300.0231 38409.2914 54539.3028 22631.5684 28694.3904 45766.6807 25462.3377 207954.8168 41380.0187 51302.8043 24064.4482 31751.3231 35049.4337 27748.264 47781.9036 39943520 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5610.5118 158045.1733 4678.098 2514.8086 17244.1342 2702.6335 2543.8721 89946.2608 3784.3932 2653.3812 12461.3608 6600.1816 4476.1085 5337.3494 6251.3652 2089.8485 6708.5061 5453.2405 2606.006 10691.4897 6343.9386 4083.031 2979.3391 2825.465 5309.5138 27657637 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. Phi1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7759.1676 6101.6129 8204.4167 2433.3593 4392.1129 3729.0132 4204.0554 5929.6031 64071.0382 4793.8625 45436.9134 2034.9398 2034.9398 11110.8454 10470.0697 5820.1483 7398.0853 13618.0173 5185.1168 2356.404 5139.0248 5237.9582 2941.8521 11002.255 5985.1824 5803.1353 3145.0153 5781.1591 4546.7979 2818.372 4552.5464 91690366 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 12621.015 10246.0385 9872.9124 6721.7797 9233.8102 3148.3787 7962.2277 8660.117 7451.4605 133674.3162 21752.6077 18631.6524 14698.9884 5827.6424 5827.6424 6110.0013 20743.9836 12135.5615 8609.6632 12069.2092 39040.133 30634.8315 9599.8227 16656.7556 12692.6067 24940.4537 19448.5652 15344.7927 5925.2313 17737.812 15476.789 7470.9432 20418.9312 29832919 pme Carbon Cycling Carbon degradation Pectin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 75557.8638 18324.6245 365889.1784 142705.6064 173071.8834 20860.0685 86239.5608 46781.6432 25710.6948 80521.6801 71608.4012 32930.2514 1731757.6372 64567.9723 74961.7896 66838.5687 42390.6625 42390.6625 48246.3367 124391.4283 60922.9957 75559.45 99285.8446 116994.6207 56339.7402 29812.6164 99824.9845 41946.7763 206238.9876 81857.3961 100292.0787 56959.1968 52322.7991 41332.0633 38564.0319 105420.0115 333489404 phn Organic Remediation Herbicides related compound NA Serratia sp. AS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7275.864 3908.3114 5492.7651 7635.7433 141617.9651 6370.55 4833.126 4592.8928 5072.7151 9941.0953 7959.1674 6437.5088 6057.0051 8474.7319 4268.4321 4504.7051 9322.9682 3183.5381 10769.1391 7216.7487 9568.9623 7818.9593 4304.7609 5077.4598 4726.5039 12667.6244 299524791 TIM Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 227659.0181 14115.4253 24072.6799 266665.1948 60046.6643 8629.8887 106355.9501 128059.1432 93727.8139 72651.7908 140574.8009 179023.5275 3111482.536 117803.064 95481.2439 159057.0567 102220.5412 102220.5412 93625.4165 104223.2764 56579.9276 270674.6969 188495.2546 92458.713 110088.3563 53904.4641 77691.0317 108691.3052 182688.6257 97349.5381 89791.5358 91995.4413 97190.6505 91841.2187 114406.3506 101141.1776 365894730 oxdb Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4627.3513 3404.6315 5459.6618 3908.0108 2857.0633 60085.8696 3719.1718 6749.5777 3175.4741 17293.1889 4015.7666 4840.5189 7851.1527 8516.978 3224.6755 5331.3174 13011.223 13624.9807 6890.0092 2856.0847 4129.7664 13270.8212 89053908 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 36395.1699 19873.243 8847.1869 5147.892 15615.8912 16853.062 8528.946 5878.8161 59872.6678 24169.2779 378844.7164 6864.2129 9524.1354 18038.5334 13974.8808 13974.8808 4588.6898 28240.8687 9347.0629 7261.1257 8782.775 5220.8373 4014.6697 18065.9059 15020.1453 13368.3295 1272156.7311 35235.5815 19380.6391 8956.3992 18401.9466 15511.6673 28845.816 11523.0848 262085411 mer Metal Homeostasis Mercury Detoxification Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7663.2889 149710.4871 7524.9187 5847.4864 3018.6748 3931.7992 6509.6219 7249.5138 5453.6859 187207.8768 8659.9263 5595.1216 5076.0367 2059.3065 2059.3065 4359.4197 10822.9051 10536.0766 7372.47 6789.0896 7443.4525 3929.2631 6722.1955 10022.3568 3973.9268 13093.9229 9920.3099 10571.5047 5779.5417 5732.554 4723.0594 4584.0735 12970.7036 118592783 bphc Organic Remediation Aromatics Polycyclic aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 6834.9154 12736.6982 24132.7273 3504.8501 4424.5999 5508.6574 6149.1855 29907.9743 11369.6111 270932.6094 9989.7743 9206.5607 4917.4518 9693.9828 9693.9828 3499.8482 13658.2181 11405.326 6375.7454 8771.5609 12252.4811 16782.4815 4453.3838 14138.0646 5883.6116 23616.6179 17917.1176 9213.49 20568.3876 6562.3317 14490.0449 6111.5568 54836.9123 169846830 protease_serine_fungi Carbon Cycling Carbon degradation protein Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 336232.4953 13596.2326 10618.5264 3139.9987 10144.3213 7531.0376 29749.9003 254146.9749 39877.0596 16775.9433 5207.9889 11721.3269 11721.3269 5656.0132 13629.4661 9981.9226 9733.3934 24326.2218 6959.1368 9510.5592 18301.6949 14371.2369 6503.5772 101737.0439 14382.7729 17580.1953 5437.5475 6862.6741 13869.4199 10365.901 8332.7619 290580048 amyA Carbon Cycling Carbon degradation Starch Streptococcus mutans NN2025 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 4297.921 7560.7402 3803.873 3400.0288 5293.9923 4306.2772 79245.6017 3644.4749 2013.0074 2013.0074 3904.0685 8442.767 6184.9727 3810.0808 5386.8421 6574.0898 2141.8702 2757.0336 6719.6905 7953.0907 4452.2032 7019.4706 3331.2115 4555.3414 36564.4737 2903.385 6713.9649 327380401 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 8290.8365 6901.2172 9096.9974 3020.9172 4468.0938 2013.167 3130.2474 10889.4146 5433.3978 111056.8221 9739.1996 9946.2982 10955.3458 5478.2444 5478.2444 4967.0026 9910.1558 6538.9548 19861.6678 11786.714 4701.8944 18150.5384 5443.6874 12334.0568 4393.2575 14135.266 13658.0792 13188.3279 4353.4894 5326.3836 6730.491 4105.8829 7448.2919 323470179 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 12074.7503 15558.5961 5218.2483 28584.6857 4313.8872 3955.1426 4946.9125 6154.0747 5953.5713 5208.1561 10489.9969 7457.2248 5863.2501 6157.9345 6157.9345 6458.2345 11968.208 6584.5989 14619.1181 11591.4081 6492.6602 2533.6707 6527.6504 13706.8609 19018.9635 14135.6647 12830.2929 12637.9923 5001.2371 5654.2769 7794.6099 4759.3619 5712.2581 109452404 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4947.2061 4112.0745 5465.9751 6505.7675 5491.7603 86351.6534 7544.4163 4659.9967 1957.0346 1957.0346 34945.4906 17176.5798 4218.2544 4383.787 5771.3284 4754.3049 5289.2959 3134.3469 11531.1387 4319.3282 6496.2041 2512.7347 3410.9965 3384.8236 6017.2001 4934.6487 373547786 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 22393.6416 14388.7031 17935.3581 14386.1525 9565.3346 12461.5251 12129.5363 11893.3049 13882.8949 22963.0152 11795.3664 264185.7746 17253.7359 141898.4309 38468.8821 38525.2541 38525.2541 11275.3423 37151.9673 21318.6555 56417.8827 85597.6497 183597.1819 68850.2692 19658.1971 23903.5066 37393.271 59736.2609 13714.3293 24420.9651 11823.44 21990.8875 30904.3953 12448.8976 135686.1148 269921944 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 5041.3381 10417.1985 15913.64 17957.4733 3581.204 18866.8054 3320.493 4225.5609 5762.4014 11104.7073 429371.4888 8523.9844 12243.5251 5696.2281 7935.7859 7935.7859 8131.8173 14193.5398 6798.5222 4924.0904 12713.7709 6044.0285 9360.8625 71233.7968 12836.8447 7447.5799 35176.3926 36335.4 15144.1202 3361.9919 10670.3158 12935.881 13763.1811 14820.048 357975063 limeh Carbon Cycling Carbon degradation Terpenes Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6738.9935 4200.0988 69606.1503 4265.474 3647.7394 226347018 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46349.3542 5321.8373 14548.9572 7695.7213 3897.4701 7268.0405 3236.3016 155596.8546 5417.0386 6050.3689 8817.0261 5267.8868 5267.8868 9357.2892 14723.8711 6719.4461 7026.1836 41865.774 5921.0113 3184.1414 4375.8773 11266.9475 5176.0775 12935.6801 7380.3351 9317.9283 2911.7975 5699.0068 5506.1887 3545.0986 12715.1454 254501275 TIM Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 6573.3493 6406.96 4960.151 5254.7866 2986.1209 6767.7769 5054.5571 3195.2934 120721.8256 7413.2667 6333.288 4603.5003 2407.0617 2407.0617 5633.9855 9553.1024 7462.8291 5305.8702 7281.4265 4316.3717 2982.8166 4076.304 9522.7136 3380.5484 13746.0603 10677.4315 9645.62 5590.1978 5150.2259 5729.7463 3337.5654 9602.0562 81254045 urec Nitrogen Ammonification NA Mycobacterium tuberculosis C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 12225.0351 5541.8029 52291.8753 8320.4421 1949.8237 3891.6594 6775.797 3106.7867 134134.4254 11361.2273 11854.3168 16921.0828 7115.3758 7115.3758 3297.604 8901.1568 11082.4046 5554.388 20934.2827 2537.8713 4837.7152 11767.4109 4986.7569 13258.3644 12164.7016 15881.9434 4100.0641 5181.7269 5448.3398 2854.9366 14423345 nahb Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. DBT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6006.2227 20605.6425 8033.8482 6905.80655 3757.87175 2300.4588 4820.6862 5672.17985 2944.5993 91561.4458 22306.7983 5945.39465 10696.3234 10696.3234 3354.4239 8520.23175 7654.25135 9991.2924 22516.5606 3886.88825 7592.7502 18119.13505 7301.4204 9183.8101 4617.1613 3990.25915 16797.18735 3467.8771 5057.642 53828149 dsra Sulfur sulfite reduction NA uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 25975.8595 10575.0711 29777.9827 37064.1078 11265.4457 10342.5643 21179.0812 8300.4002 38126.9666 15117.8462 20031.809 305114.9264 41540.0606 17235.2591 16104.1225 16658.4521 16658.4521 9956.6462 33151.6842 19931.9656 8746.3813 18708.3866 15294.8003 203174.276 11836.831 57237.2052 10902.5407 46160.284 25967.6335 53941.2811 10492.388 13846.0923 46480.2869 26488.8046 23266.2401 398868987 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23397.6209 13632.9264 18909.4996 12082.7292 60376.7702 5710.4323 15385.1656 23755.1116 16551.9843 235621.1571 14858.1462 50086.6376 19821.0664 52674.7864 52674.7864 12959.295 32629.2388 23967.6323 32428.1788 44043.2399 11830.092 13994.1247 15441.504 33620.5734 34980.4565 48070.652 26407.1171 34546.3 11333.7503 28139.2874 20547.0779 224429.6106 16017.1758 332981939 ppx Phosphorus Polyphosphate degradation NA Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 64066.1494 14169.7905 55662.14 48473.6652 268646.6807 41713.2749 258272.2394 54632.6855 34673.8436 73882.0057 71063.3536 89018.2471 1242425.4159 91621.3079 94705.9571 77369.4629 54165.2951 54165.2951 57058.2122 103333.1847 61635.1904 64702.6527 137906.668 173739.5196 59365.1659 38601.9556 72932.743 57104.8616 206106.3216 79704.3036 88543.6123 56960.4742 42560.9595 138827.3856 45483.3769 207084.4954 162453445 RgaE Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 276693.5353 26657.8609 199190.9898 54752.9563 112520.4443 180931.4643 77865.874 98605.6663 128073.5941 88010.2313 162517.6049 73875.1864 2689201.36 71811.4929 54073.4284 208583.8596 118674.8283 118674.8283 33652.9884 139715.0642 42987.3792 93080.527 74776.0307 58599.4513 48703.2756 49659.5598 102616.4749 41635.7286 172673.2051 101283.1462 101145.9794 29418.1276 59713.2047 63259.0347 47359.7643 137800.655 58613942 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5214.7047 3859.8855 2770.7054 6851.7898 5181.2732 7632.2426 8030.3935 86481.7187 5803.4855 3154.6744 3154.6744 5024.8923 6443.3611 10125.0952 9708.152 5706.7761 8318.1539 2818.6778 4518.9637 8848.2805 2547.4258 13380.5322 5767.9059 6374.4389 2638.7531 4979.3398 5184.8747 5166.1729 171060369 proO Organic Remediation Aromatics Other aromatics Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 88715.6446 23409.0328 17002.4482 302685.6318 9519.3746 23153.1399 25352.6398 22137.3689 25583.1989 30072.6563 36474.7848 1487754.9083 105633.3724 93511.4186 88696.4286 40169.5691 40169.5691 182166.473 45892.5733 24168.5515 27931.8271 61041.6107 40943.7619 31287.1346 33178.8891 27160.215 29623.7541 58345.1202 49145.3013 45437.1957 52360.6299 72752.7977 47961.9294 30562.8515 42101.6221 300245787 ben_bcla virulence NA NA Clostridia bacterium enrichment culture clone BF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia; 13772.9594 11367.9251 11148.5397 9892.4973 8913.3432 7586.3645 7035.2128 14110.2218 12996.739 7635.9098 412372.3539 23699.7908 17733.4549 21755.0655 12157.169 12157.169 11312.2324 23013.1077 28030.3895 14774.9004 17350.5326 17652.874 8158.3693 7948.6625 22768.341 9041.2499 32777.1172 6939.1608 46359.6369 7169.3533 11077.357 12836.1019 6360.6863 23309.4439 62003577 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14326.0112 5609.8235 24634.7358 17611.9289 7450.3258 11070.7756 7781.1141 134352.4792 13733.9011 17398.462 18888.5406 10130.7285 10130.7285 5683.6189 20841.1359 25951.3436 6099.2492 26554.5246 11871.8935 6619.3229 8341.7459 18957.334 10208.4167 35573.6536 76637.0142 10019.554 5321.9031 12394.0937 8621.1003 6329.2327 8553.4206 196226334 nrfa Nitrogen Dissimilatory N reduction NA Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 22113.3413 8943.8114 7638.0117 21224.6221 11127.4463 47460.2537 9365.9382 2326.5782 73420.1103 20439.4163 13715.4187 99439.1287 19600.9274 12317.8107 68340.2522 16909.4763 16909.4763 14204.5543 20893.1318 22340.737 53614.6715 20832.4353 183420.5845 7309.68 14708.0453 32694.0256 6962.0577 46072.7325 16349.3508 189125.8164 5425.4369 30633.4885 23117.1528 12846.4736 10359.3436 338760140 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii GR64 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4964.867 2904.1687 6218.8512 5366.0971 7271.8328 3987.9983 40375.9123 5951.1662 4140.7493 4267.8506 2502.5771 20650.0017 6593.8467 6061.0357 2228.8971 2860.3202 6699.7755 386000907 dsra Sulfur sulfite reduction NA Methanosaeta harundinacea 6Ac superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 14473.6091 7220.6474 5565.1569 14701.5851 3871.1278 5658.493 7455.8827 2299.3932 2299.3932 4801.4471 12443.2085 5750.7919 6528.8267 18030.5703 63102.5286 7781.3621 3799.5826 3053.3212 3844.4063 18826.1318 6297.1436 229760704 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 26652.7853 14094.9499 60105.1821 15390.8008 8095.0965 14922.953 7304.3627 5984.3335 14080.7795 39494.2594 219488.9023 11535.2902 18673.9179 18062.4066 18163.5626 18163.5626 7164.5955 18063.3215 26191.2747 8742.3155 12486.0485 10059.2132 11157.2493 15961.6227 49875.9014 13268.914 29650.5534 18091.3122 32338.659 10647.7558 15167.5504 13567.3666 31303.3098 73260.4077 6457937 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 23234.3853 5662.3467 4242.894 10488.7467 3783.408 9213.7152 9293.9035 18052.8772 273983.0994 14531.6385 10600.3749 27665.8919 13691.1134 13691.1134 8841.4504 18667.666 11108.9049 25082.4813 19120.6092 14299.4262 7126.193 7880.688 11824.7888 7406.5509 34543.4185 7153.5814 17144.4216 14351.4571 10875.4798 11578.9658 15281.8145 20782.8668 356608699 gdh Nitrogen Ammonification NA Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 5329.7386 6646927 chitinase Carbon Cycling Carbon degradation Chitin Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 4336.9083 9501.7204 8329.453 8857.252 3965.6609 9228.4385 3787.9904 3437.3228 97710.9664 3861.1378 7017.1318 3056.4773 3056.4773 2568.0075 11864.2111 7961.105 5428.2361 3743.761 15306.7081 3184.3715 7957.7684 9524.4287 8720.3873 3870.1641 9529.7701 8183.6548 4799.0123 2948.4823 3514.2703 5687.1861 190891669 cysI Sulfur Other NA Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 29447.6652 9531.6003 37959.1787 2845.2105 5464.7042 7477.4127 6023.4047 103031.492 6309.0858 7371.4345 4251.7022 4251.7022 2949.4352 11565.6434 8219.1126 5319.3377 11168.2855 5697.5587 7246.4609 6922.0615 7711.0796 14294.5088 6459.7211 14960.9901 5332.919 3989.2287 6836.383 5368.7514 7778.3911 193215582 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8249.0227 27350838 PRK Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 9664.0805 5353.3553 7123.1544 3829.1318 7125.6751 4845.7226 12524.4075 14746.6119 90360.9433 112391.9825 8004.5026 10304.9286 10371.4046 10371.4046 3806.1315 21561.5349 9975.2917 6539.1334 14217.9177 11528.3367 4910.4436 9936.1138 8777.8033 66788.3804 15563.3409 6180.8093 13331.4743 6526.4805 11329.7908 28422.9036 6759.2708 10608.5631 383108298 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 6175.5572 19976.7721 10189.5338 2989.6377 91775804 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 24781.3335 5083.9701 7904.4221 23081.7969 11128.9438 5179.2048 20707.9193 19034.9084 11329.3937 139819.0675 4579.41 13680.9806 14148.7204 13165.5108 13165.5108 3454.6882 12467.4533 6994.7191 14538.7376 2829.1442 10262.5516 11570.8312 5376.9584 20685.4373 8221.1963 12594.7156 9503.935 12582.6801 9697.2983 2605.5164 260861571 ppk Phosphorus Polyphosphate synthesis NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 19401.1491 33727.6797 90474.7877 24785.1016 206672.2728 13910.9374 8411.8798 18492.8607 12594.0543 53125.167 15330.323 28921.2043 299544.1715 22586.536 15320.5321 17388.2333 14608.3803 14608.3803 136826.6764 20462.4599 12566.6062 10800.959 23333.6725 12690.3201 17829.4805 16870.8407 29636.478 14454.4237 62066.5277 37548.833 34847.5719 15635.734 17207.0469 25921.2272 23408.9572 29817.6719 257064398 amyA Carbon Cycling Carbon degradation Starch Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 16546.9635 7858.1884 7668.9148 3501.3997 3374.9664 2662.759 8069.9571 5691.3366 3302.5812 113636.2023 7705.3385 7899.5237 4407.3549 5085.298 5085.298 4290.1677 7625.2055 5841.6895 4807.6432 5834.9373 7379.6219 2433.1567 3386.6085 16232.415 2621.0235 8732.432 5766.8836 8001.2038 3753.2696 3922.2581 4859.3768 3247.2835 6249.567 319948792 arsc Metal Homeostasis Arsenic Detoxification Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 93852.1338 22514.1092 13083.2585 30937.064 22386.8667 23485.5228 45810.3378 16640.0447 53915.201 26437.5486 130642.72 565727.5216 114540.0374 68632.2271 52408.8168 50021.3618 50021.3618 18347.895 129915.818 36834.5054 31164.4342 145974.7483 56062.8489 19565.9111 33941.1155 170770.8427 50359.1012 94972.1088 47236.8497 39690.5145 39722.2359 60512.9459 39724.7773 54737.7508 39218.9872 357201465 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 6486.2596 6138.2239 9746.5788 9817.8099 6166.6492 5534.0491 4903.689 11532.4317 9810.7492 5919.1371 161284.573 9912.281 11888.2117 4474.3955 4189.0052 4189.0052 6666.7429 25593.822 10476.6563 12655.8062 10121.9101 8391.5367 3952.2225 5313.7959 18223.0437 6608.8834 19489.2664 10066.1479 13615.6458 4738.046 6349.045 10605.4574 4100.7007 14595.8114 365290643 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13288.0641 18009.5171 10217.6641 2203816.8244 6725.3706 12720.2067 20364.7433 5741.0757 8756.8645 13144.4784 271153.09975 14425.5835 14269.6391 16854.3517 10823.9396 10823.9396 9825.6593 13247.672 12473.7049 10737.7759 14791.0715 14802.3075 8036.6505 8354.0701 17184.9299 20516.8848 11212.783 10648.56595 9291.27845 10116.8102 10197.8607 29317.9575 14253.3494 325975947 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8179.7942 195674.7804 14356.4701 294634.5417 4110.7712 5056.6492 7166.1784 6031.878 3322.2656 121242.0001 59569.1712 8692.4901 108286.8326 3656.8817 3656.8817 6122.1758 12028.5345 5979.5136 5158.5627 194913.5858 5031.4163 4347.9037 9833.3155 7462.729 4465.7747 30860.3141 4984.1076 10568.4131 2840.8671 7769.513 6728.9573 2513.4905 9143.1527 325948647 nfsa_2 Organic Remediation Aromatics Nitoaromatics Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 431535.6994 45971.5185 239713.4031 525179.0409 181307.8054 94359.7201 196035.5421 436408.464 214705.4728 229173.2876 226834.3461 185205.1198 5544588.8312 311699.9516 269175.5673 484656.9723 244952.7084 244952.7084 179034.8439 299615.1059 145038.5021 281978.8741 422039.5901 646177.9028 201856.583 127750.278 208653.3256 151489.3424 363595.8816 179652.6754 426924.3881 147498.7472 229866.6429 174591.1501 185072.5704 320971.2684 74038486 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25569.5741 28707.566 8135.1206 11744.8345 4153.8562 46851.2622 6580.8345 31180.9171 16318.0477 80378.7172 11814.5844 5489.86 11585.2334 12692.4906 12692.4906 3782.6875 14537.4329 10951.5251 6549.7886 6856.5594 33533.7026 5872.7367 21033.1938 15231.3664 39010.2758 32921.1679 17982.1026 26130.1552 4119.879 19564.6663 14288.2225 8328.645 6029.8341 116013342 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4774.5233 6482.3979 4578.8692 4074.2067 4749.5822 5553.0593 5013.0052 5579.0084 90000.4148 4925.8673 3984.9073 4319.4851 2219.7368 2219.7368 5104.8625 10781.854 7563.5908 7749.0399 5863.6288 6673.4311 2162.0426 3287.4384 10080.347 3224.6796 10456.3247 5687.1013 10029.3216 4307.5939 4581.5423 5335.9031 3386.6519 10787.8234 197116719 merb Metal Homeostasis Mercury Detoxification Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 4363.6022 10198.1003 5597.4341 3687.1049 3264.6477 70326.691 3176.1889 5128.4107 5128.4107 7073.3196 4314.6664 5834.9783 3598.7259 5813.7404 2528.841 9145.8399 6402.2167 5996.8743 1865.6492 2986.1286 3803.6503 2207.409 6648.8858 76801449 nirk Nitrogen Denitrification NA Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 56293.6351 39268.8591 36887.2827 89752.3743 12201.1027 35349.9925 63082.0834 49836.6622 52866.3984 42098.624 37295.5919 862106.5634 59020.5347 59337.8347 57618.4865 38127.1809 38127.1809 27732.6657 104470.2246 34891.7342 50455.809 52396.9936 53445.8393 24610.2217 28378.5785 53092.6319 43990.1802 117529.3807 54265.2199 64556.1313 27356.8198 46713.3683 32517.3523 45863.3324 44359.1285 91684421 urec Nitrogen Ammonification NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 17562.8028 9900.1942 13811.8277 25634.7791 5559.8263 16851.9057 27739.0218 11990.658 39299.1536 33279.2551 123882.256 377031.8713 17561.2711 100071.8844 13984.779 113206.7992 113206.7992 14237.5835 23603.9561 51185.101 14517.9946 169599.3241 29346.6693 18180.4148 21834.4483 23750.6052 29062.344 74998.2394 28470.7747 25166.7122 14812.9582 36196.065 43872.618 31152.8328 19062.9652 158338026 PRK Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 5211.4273 2517.6283 5398.3812 6294.3089 6294.3089 8774.5314 10186.879 9195.3643 157804784 aps_apra Sulfur adenylylsulfate reductase NA endosymbiont of Inanidrilus makropetalos superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 62533.8571 34688.0333 251784.0253 31449.8934 11099.3612 10190.3951 237209.0412 29250.309 21330.9244 20990.6743 51825.9672 536779.7687 193743.3064 205855.774 44262.0018 56722.8116 56722.8116 23333.7076 71957.3567 30526.8169 43424.4716 75387.3798 25023.8214 31234.0799 54766.0346 43509.3021 24680.5257 81407.0898 59106.619 43040.0269 22138.8702 49572.5532 46409.0377 48922.9083 75231.39 166408352 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 100351.7592 59208.5703 1474900.5474 21048.9757 6220.9177 12436.2298 215765.8392 10420.8149 14599.0881 26638.6464 33835.0357 400444.3987 39147.6691 23923.2643 26562.8603 18547.391 18547.391 17864.1841 33263.6765 15084.3694 37181.3742 78227.3065 36208.5959 18835.8025 12654.5675 19334.6688 40989.646 90349.2298 12887.0041 23374.5542 19097.8247 12445.8594 19790.0253 9761.3539 36294.8069 254948606 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 30466.82 54908.6948 7978.7574 12201.6759 23393.1477 15317.9558 18781.6244 16032.475 18127.7216 45863.5828 610532.9979 17411.3021 27720.811 41619.0125 24938.1911 24938.1911 12681.8398 39053.6964 20876.6575 23386.9378 23141.9757 32407.1627 14368.7324 17416.384 19037.0887 12454.2509 84615.4737 46306.0497 27773.0592 14697.4895 14526.647 27103.3591 12109.0977 37638.4453 361060462 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 203558.9773 15867.9385 26954.7826 32715.3126 66104.1934 24078.3646 32986.4644 35030.9508 18087.9453 42897.7031 33143.488 21668.3977 760009.9786 50004.3719 35018.6411 41207.1457 44597.4949 44597.4949 50726.9188 75306.0451 32236.7389 35295.1727 78875.0689 44295.3083 25619.6018 26285.0126 44709.7158 20808.2437 62175.7356 38413.4657 54109.1246 22441.6485 20143.0041 52034.0984 20645.6178 51790.5619 349782685 tktA Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 4483.2149 12174.9323 8778.2523 4953.2339 9036.7556 5142.5067 9349.7259 59844.2678 135975.964 11370.2396 3882.888 1964.8075 1964.8075 34051.3452 15239.957 10830.7482 6958.857 4362.5401 5428.5742 8174.0707 21852.6903 9777.8808 9309.6937 17090.1326 11803.0024 10708.9611 5787.4919 6097.6121 9317.8229 3981.5696 7460.4954 325674416 amyA Carbon Cycling Carbon degradation Starch Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 66979.1966 53893.2009 27898.6227 62727.9298 25938.554 24723.9426 39790.9987 91607.3797 20770.2892 37325.7363 66959.6479 40694.7381 1034891.7087 46740.439 38717.7107 42290.141 23629.4434 23629.4434 54761.4601 41586.0596 29413.263 46294.6508 52335.5125 56127.3655 19191.1428 22030.874 34856.0232 20247.9135 50939.3592 34850.1432 34988.3857 77854.805 25059.7488 27510.6072 29210.6869 71531.5825 254500307 nifh Nitrogen Nitrogen fixation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 16578.4657 44233.971 20068.3725 90345.2592 9281.6611 8087.097 12211.3544 8869.3121 34937.6873 28818.7995 41828.991 529137.3935 98465.6089 20107.3993 24801.3202 18405.1682 18405.1682 55714.8582 45567.3127 20091.3754 24651.09 52572.7369 17313.0642 28910.1145 22744.0071 25425.1943 23259.1742 64359.0901 31197.0192 114756.8699 9955.105 61843.5915 28486.5195 120881.3054 63035.225 84489913 nifh Nitrogen Nitrogen fixation NA Methanosphaera stadtmanae DSM 3091 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanosphaera;species:Methanosphaera stadtmanae; 5528.6443 5769.2062 2792.697 2346.2253 2132.8282 3445.8105 58895.4142 4132.1132 3041.2051 6202.586 4846.3639 4317.903 5385.1251 2402.437 6214.9092 9188.4523 3926.5044 5841.2011 2923.1395 3206.7672 2213.0067 6153.0844 149915958 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 20274.7008 13248.1124 7121.3159 15297.1566 4201.6597 7959.2021 9390.9865 6365.6777 11544.4314 12596.9188 9475.3723 225247.0656 18925.5279 13044.8169 9964.8336 6776.8241 6776.8241 9446.9199 19486.9144 14506.3593 11696.0378 21310.0349 18700.9544 9196.3719 7015.3385 16488.5803 167382.2047 28868.4732 14093.7653 21932.8625 7196.5264 10803.0848 11608.6058 7007.6054 24641.372 283362016 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5424.8208 10655.2313 11132.307 8474.1787 3032.0883 4504.0509 7816.7137 23504.7665 150345.0934 11603.4661 6524.1222 8074.6772 6001.1462 6001.1462 3696.2054 15243.9744 9498.6625 4891.1881 8527.4127 7509.6574 3810.9313 5663.3248 17027.2707 4120.771 20607.9401 8741.5643 23838.7203 6365.3025 8747.6284 4259.4018 3598.5535 6254.0842 115402963 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 86510.9929 14254.8283 30619.1344 37107.5704 693060.9473 16953.2976 21327.886 39832.8968 18871.4719 69965.4106 96216.1384 21590.9805 472491.979 23166.0537 31517.1461 40256.7257 20243.1031 20243.1031 21502.0931 40086.1586 27881.8718 36849.7594 32636.0738 20975.3212 21570.8304 17713.9762 34335.2121 21475.5189 76816.1132 49015.9188 47781.655 19623.3904 22823.9168 24056.693 25640.4155 43706.4432 17431841 nosz Nitrogen Denitrification NA Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6689.2358 12585.3471 6548.0281 13757.5746 3663.8769 3283.0335 4421.0623 3232.9667 6230.7508 67771.2023 4293.9667 6734.7927 5019.6154 4397.8843 4397.8843 2839.2205 8626.6873 6609.18 4352.3457 9122.6754 3770.6228 3873.3342 9027.5722 3511.9972 11493.3761 8402.6935 7995.1399 2585.3701 7195.6602 5915.2885 3046.8943 11774.9747 74053782 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 19846.8684 1933024.0675 11249.9946 70683.1783 11024.3526 10369.0325 52503.0193 27422.4684 39390.5191 17565.3359 49501.1848 23455.6627 330269.6488 31902.1693 26831.8963 59998.2327 28155.8774 28155.8774 25325.1587 74345.6148 62639.0418 32308.7116 60451.8214 12279.8938 28398.8298 77631.2534 30838.1575 26551.446 58697.9676 68050.6195 34611.6518 36633.0422 48503.9321 38581.1149 47522.9555 39745.6749 184192113 ppx Phosphorus Polyphosphate degradation NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5592.5669 1854.9515 3640.1018 5194.8773 2621.5844 3216.3932 4843.5587 4518.4088 7655.4075 4884.6275 6964.4793 7252.0569 5704.906 4979.0423 5454.2042 8375.4354 4808.7119 7559.0123 3510.6619 2838.8853 9517.0968 2028.9253 4662.5621 377572057 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 12238.9043 5004.5757 7735.4639 4618.2336 5736.2484 2048.2658 6167.7431 6186.8107 4464.4884 132078.2577 6292.9439 6516.9244 30268.1272 30268.1272 5997.351 11376.0605 7891.1204 54374.1087 9484.2635 12368.3277 5098.5522 6528.3103 12659.2481 3889.3717 22173.8671 9449.3399 15331.7249 4274.5093 7577.7915 6891.8069 5957.055 16063.2976 308921479 terc Metal Homeostasis Tellurium Detoxification Ralstonia sp. 5_7_47FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 17094.718 5431.8738 28684.5203 471812.7095 9519.2295 12454.9015 15266.0192 26707.4452 13659.0284 23173.5629 20185.7867 420676.7205 18571.9124 21114.3869 37728.7212 49000.5467 49000.5467 15166.0066 28871.4864 17303.5384 12472.4536 92872.9383 20118.1092 11436.2686 22855.732 59559.7225 15815.6415 85362.068 17250.9313 22312.6962 19029.2183 18839.518 49752.9157 22225.9764 21227.438 298273079 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 35264.906 357366.5001 17658.5953 19452.4907 11455.0395 5775.7588 27507.9841 28589.1833 18696.2172 26791.7662 32580.6946 39317.3924 727475.1338 28039.3246 59507.3587 25374.3878 15566.9006 15566.9006 23868.5009 47547.0949 55361.7539 28289.548 46408.6879 26067.4498 19984.6364 20966.6937 71912.9875 28421.254 57181.4025 12755.3939 39634.8027 32830.6423 50142.9392 54667.805 21708.3079 61238.5599 31337508 rd Organic Remediation Chlorinated solvents NA Dehalobacter restrictus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 14560.214 9194.164 5289.5604 14825.6049 8105.3905 7107.0773 12775.9528 7250.5067 9496.579 6128.2743 182925.4189 9270.2609 15349.4929 7472.0994 6809.339 6809.339 10633.8588 16391.6353 9716.3139 11270.5991 15802.5789 13559.0257 6262.1853 6025.2643 12962.7964 39217.9261 39561.7757 13531.8912 13584.0291 8842.8197 8569.2403 8423.1293 7967.659 23706.2982 255319661 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8291.2056 12996.9923 2910.5361 3058.5054 4698.9062 9201.6023 2439.4371 5109.8646 5690.4939 398412968 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Zymoseptoria tritici IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 29388.1229 8708.0961 5098.494 8464.4827 7437.3259 31582.9642 4736.3317 13300.7012 89863.1736 6347.346 286193.5443 13202.5475 11578.798 11127.8502 10839.6508 10839.6508 84459.4507 24314.9387 15368.0518 40487.834 14957.7284 16129.6038 9712.948 6721.7279 14474.32 6193.9943 29044.6851 14162.1446 19514.7471 5345.3532 15566.0265 11271.876 20796.4096 23281.9645 22297812 terc Metal Homeostasis Tellurium Detoxification Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 6246.8224 5707.1021 19060.9164 9342.1585 3159.5693 5648.4735 6850.7186 5524.9039 93811.5763 7003.0376 3767.9863 7575.8862 6702.9599 7630.6843 7996.9929 3549.6934 6912.234 3047.5096 10600.9341 12251.7034 7444.5128 2009.3978 4603.9164 5953.9045 254451238 dmdA Sulfur DMSP degradation NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 8743.9479 53368.6557 1702.693 2237.567 7074.6053 2585.0302 10532.4109 4433.2139 3694.0253 4716.9136 9319.0339 6154.0509 5458.4863 5458.4863 6789.0432 8005.8159 53289.8253 3227.2822 5246.5023 4296.2313 12887.0919 14251.1386 8251.9404 3556.0111 5806.6722 6081.8868 8433.0641 152996725 ara Carbon Cycling Carbon degradation Hemicellulose Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 11947.5191 28492.8869 6235.3101 10912.2878 2834.3045 5512.9564 31819.6916 31634.155 8373.7679 5130.5713 100697.3633 7444.7874 5988.5158 7722.1445 3662.4561 3662.4561 3476.1887 15603.3895 12401.398 9296.2449 20065.5597 6149.3456 3688.9388 9101.6517 10218.2213 9548.4724 17601.5097 7299.135 11636.0304 4144.8853 6284.3704 7916.7823 5396.9703 8876.0061 260223593 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10124.8053 130060.7762 9187.1776 15721.8267 24051.1107 2461.2218 6363.0474 11268.56395 97255.56705 5883.7796 9495.0715 7160.7443 11096.9196 11096.9196 5848.17375 15283.7557 5438.1076 4810.91055 4365.5288 6917.7513 5533.1378 17400.9522 11583.12295 13531.85665 6897.70165 5586.9256 6649.1498 374984465 pme Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 23752.6223 548063.5256 161609.0177 20496.8119 22923.7699 16956.4236 21850.0716 23358.2383 47884.6863 14399.51 33755.9868 22177.2128 405306.4352 20870.2862 30533.1617 21642.734 27403.8711 27403.8711 37042.1039 52470.8167 19143.9561 13905.2895 46192.2631 27448.7287 23008.6237 43829.0074 28571.9627 35478.8643 47165.825 28104.2114 52989.0214 20361.5939 24323.7041 23250.545 24716.6444 24040.4144 62003563 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6541.1892 11149.1639 5331.2748 2885.5009 26129.3102 5663.3652 5643.3029 7458.9956 8090.1737 17593.9932 17593.9932 12407.5093 11513.3046 6188.3587 3526.3346 13453.6768 4096.0218 6893.7769 4030.089 8931.8285 6601.596 11879.1443 14011.3503 11004.9762 5622.5421 38986.1909 9380.2161 6706.0093 5663.5985 126348664 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 73067.9906 5206395.2387 24948.927 13750.0712 32676.0632 29102.7128 29027.7769 75725.2196 33487.1076 39648.5293 62094.7869 52499.9911 622755.1456 48873.6923 44791.3423 719133.7058 28876.9401 28876.9401 62583.5122 64334.7144 57210.1492 104473.6097 123970.502 395730.8922 53968.3758 31555.2988 81751.334 190482.5724 431102.4501 63279.3895 79611.0693 33735.3357 75887.5445 46004.4851 82475.4 186609.8673 32816567 chitinase Carbon Cycling Carbon degradation Chitin Chromobacterium sp. C-61 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium; 138714.8416 26250.7133 158050.9225 108204.6893 80298.7172 197444.9734 68254.4028 120495.6783 100882.0963 121464.5903 194080.7016 112975.0088 1434369.275 98789.7311 255234.4495 194389.6217 59767.6389 107987.1383 100865.5761 89863.687 144260.0863 110212.7907 86238.6879 71023.7225 117034.6633 146864.3889 245530.2304 142843.8424 115404.2446 286568.0438 95512.4507 100475.8204 55991.4082 84350.92 325950845 amyA Carbon Cycling Carbon degradation Starch Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 9962.0233 16206.6104 5090.9933 3372.5935 2347.4412 85391.6256 3839.4265 4910.5747 97639.7257 97639.7257 6169.8988 4279.8765 17624.8223 86650.9972 2603.4155 5658.6375 6912.2283 2725.2367 3533.4933 8225.8649 68345516 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 55077.0926 73427.2818 9842.0557 85840.6795 4777.6009 13074.0417 39875.4709 22714.2262 10784.1443 43711.1072 14686.307 497024.715 12939.6752 21486.1592 18419.9254 11810.381 11810.381 12182.9355 77954.8184 10587.6185 31955.6372 37477.3496 22374.6134 21737.9754 12127.3169 94794.5901 38594.3529 107815.7262 30848.3085 70260.0716 29872.5859 126377.1568 66371.4913 11174.6469 12574.4728 373486914 ppx Phosphorus Polyphosphate degradation NA Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 23265.3085 25540.1589 6822.5407 28432.272 14149.5247 13199.2993 19896.7369 17927.5522 17522.3137 29814.866 50200.1902 1326046.4946 16588.9323 38404.4568 72761.6953 23730.7991 23730.7991 13904.7138 44740.7855 16642.9395 49880.4388 21866.9376 24907.11 20452.1689 14991.4474 28717.9132 20354.641 45720.9096 29996.7737 22460.1113 28267.5057 32085.0484 43213.3879 16606.0773 16184.5348 357597560 poba Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 9292.2238 9221.022 5410.645 6417.4023 10364.7761 19405.6471 14725.6292 191576.7331 11488.7216 15757.4339 12630.8998 9518.1802 9518.1802 289772.245 28749.925 39813.927 4128.4493 59092.9529 4613.6982 2547.5595 11113.1686 63726.6075 5944.513 29413.8854 38732.1123 35215.7656 2641.796 29099.7268 47595.9101 3055.5677 120598433 arylest Organic Remediation Aromatics Other aromatics Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7853.3427 7506.928 9113.279 17332.5381 4357.61 6441.3637 13914.1766 7649.0538 10539.8689 4030.1992 195485.6588 8441.8407 7427.3406 20458.9072 6334.6583 6334.6583 4026.0451 11929.5435 9592.4161 5779.0341 8132.8479 7316.7261 4315.9107 4410.037 9828.076 4766.6708 15212.5162 11882.5557 13387.0569 6257.3551 5029.3494 18584.3792 3945.0651 8816.1732 361064211 cysI Sulfur Other NA Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 30229.6493 23734.484 23989.7901 10564.7396 14902.1781 16624.9027 9995.2017 12978.0508 14925.4776 6189.0566 330798.3576 25330.6221 16490.4325 17660.632 12498.8945 12498.8945 114156.8127 25621.2542 19037.8228 17768.3193 31108.5787 35153.9947 8746.9639 9033.2742 17013.1011 11173.759 33839.6188 19921.0708 23612.1008 8607.5531 12437.4489 10854.1936 7857.2047 41813.4784 323359168 ppk Phosphorus Polyphosphate synthesis NA Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 51987.8546 48362.0359 12615.8763 96028.6753 19205.3377 34323.6518 47148.878 24545.2475 34034.939 119427.0542 51989.3123 514067.9127 19340.9677 49853.2038 62416.1816 32395.6308 32395.6308 14904.8151 54388.8437 42606.19 46078.4396 40590.1545 41464.2246 202653.2074 39295.595 24785.128 34037.9969 69962.5407 26330.9531 41769.1902 28330.3131 54365.5144 43167.932 35023.4551 18315.1424 189199062 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6152.569 5430.5212 17195.2252 9428.7392 3334.8606 3334.8606 3689.6633 8677.1615 17680.3504 269957520 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 41021.6556 98056.3153 14485.8346 26609.1809 43406.6105 13891.4103 14103.1554 18020.8059 11205.5888 18141.2079 42415.2829 19281.726 804494.9694 23744.1124 115843.0207 29245.6118 61667.3287 61667.3287 10720.4712 55872.8561 24396.9977 17965.3702 21492.0352 21003.433 20543.5765 17522.3952 38898.6623 17592.0574 98667.6578 55552.4391 50389.6973 16574.1916 24389.5452 18159.7744 29936.3799 47415.3224 317400663 Sir Sulfur sulfite reduction NA Neisseria mucosa C102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 402870.4926 22553.6918 157041.7927 268995.9575 830506.1226 58058.8785 121489.7431 241124.6611 238051.1278 124577.5003 261575.0114 188356.1551 3530130.6641 460387.9767 481564.2738 206758.9991 145290.7839 145290.7839 138440.8818 220261.2752 89960.7119 194739.4246 299814.5783 368522.2289 126640.0266 82523.5017 141386.6714 130860.3044 420444.4378 126304.2841 192415.6819 125495.4428 146229.3862 163178.2578 213478.3896 895942.4727 330468651 terc Metal Homeostasis Tellurium Detoxification Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 7984.8288 2540.5002 3585.7926 22502.435 4345.8163 6093.2562 6074.0878 5706.6495 4112.894 6953.5281 4958.4486 2712.558 6951.5293 88702530 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 5833.0991 6724.7111 3185.3046 2275.8113 2217.7694 5006.5267 3745.6535 63686.0457 8308.3387 3878.6066 4834.0726 3221.02 4569.6336 16024.3793 3314.7545 6096.9774 2142.1728 7358.6878 6902.2478 3044.8481 2789.8642 4140.4793 2563.2956 299798751 RgaE Carbon Cycling Carbon degradation Pectin Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 19604.1485 41666.6134 2739.1976 6798.0399 8332.7146 5965.1236 5141.0316 8322.0402 219689.1858 6722.7234 9843.656 15437.3816 15437.3816 6195.0347 22562.9667 6674.0959 29542.1922 10405.1576 17258.2189 9421.6245 8576.3754 11896.514 8200.8597 125925.3453 14263.9763 16512.5285 6318.8029 14458.8324 20168.2287 6960.8958 7765.7579 304405342 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 4504.0615 74374.3288 22811.1654 26566.115 13595.5074 31024.5408 8342.5839 202561.4442 7750.7286 10527.7742 12752.8638 26605.1716 26605.1716 3714.7195 32998.1587 7043.6676 247117.2357 9498.4813 7935.5818 15531.1163 7439.245 7383.5143 40427.4872 33043.3327 9102.188 27913.6523 13707.8191 9390.8012 8683.9431 5324.7388 85739.819 302887096 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 93615.9377 31555.7104 62798.9215 65712.106 71947.2469 12887.3646 119323.6247 84171.2715 62125.2678 53700.5607 89959.2842 80698.5724 1394423.2758 71345.2312 82615.1492 66538.579 74943.1348 74943.1348 43615.0773 99670.5309 76858.7716 97375.5116 131730.3924 117596.2136 61408.2222 53417.8499 74102.9749 75572.8995 252729.3776 63376.7226 118387.6945 49096.2262 60633.0745 73217.4732 154594.4496 229248.3436 37548716 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6233.516 3516588.4043 928938.4015 396035.8441 3125.1223 3125.1223 10206.3544 6590.3074 2432.538 6478.0216 206361.6916 383455507 chitinase Carbon Cycling Carbon degradation Chitin Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 11425.5585 8145.8866 11081.2343 8708.19 13618.8574 8163.159 8168.6985 12458.6029 9188.1291 7577.5735 290111.8886 15831.1465 13928.1349 12526.5376 6055.2812 6055.2812 12648.6607 21620.919 13403.0943 43453.6443 16178.55 20842.3217 6778.5129 8919.1372 18290.3662 6672.8554 28865.0509 9223.044 15445.581 6234.6692 7966.8024 11803.4345 7509.6124 168541.9739 159045240 dehh109 Organic Remediation Chlorinated solvents NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 5209.9302 5945.7859 21457.3578 3430.918 7870.1562 8984.7832 7046.8475 6887.7666 9587.5867 8250.2218 8250.2218 3426.1811 9373.5287 30671.757 9423.9953 2609.1649 7560.0285 3080.5358 10872.7075 7368.8003 2432.2179 4703.9682 20402.8069 11394.3396 377542729 napa Nitrogen Dissimilatory N reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 5281.5176 5608.6392 2382.6523 13900.6843 4799.2314 7474.7639 5264.5212 5106.1974 5269.9229 42649.0099 8805.3476 2011.7688 7228.8464 30581.9353 49614.9055 3484.1769 4148.0414 32145.1925 6093.0897 344338173 soxY Sulfur Sulfur Oxidation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 4764.0674 3633.5118 5056.8214 6079.0514 2553.0566 133549.7176 5189.2348 3246.2969 13378.5337 3188.5395 3188.5395 4503.8584 5373.0415 113644.9527 3132.9805 50047.4091 8133.5673 4144.577 5431.7671 2345.4586 3183.1407 14818.0614 4550.6231 22652034 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 57827.5533 11164.7635 6355.8467 5271.4127 9889.6939 11671.9577 13672.6618 8442.8364 6835.6983 129737.4303 24506.017 183165.8645 92633.3249 5585.0858 5585.0858 6520.4647 12109.692 4395.0866 6643.246 21617.9863 1212805.3803 4575.5072 7164.2814 8507.4704 11103.1931 16645.4268 7792.9273 10990.4389 3834.7432 9559.7923 6891.9015 4933.5457 54668.8334 111147341 cdh Carbon Cycling Carbon degradation Terpenes Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 13429.419 12630.0473 11857.9262 11147.5039 16650.8898 14432.7494 13799.4895 10280.2324 12754.1601 342089.7759 18269.0454 1468273.9807 18796.7814 16101.5406 12066.0603 13813.8327 13813.8327 33422.7592 33326.4977 488991.2129 15087.7771 30246.7164 27449.0445 15104.6079 18907.294 27561.9706 60035.107 31539.7657 14790.965 36670.1193 18831.6456 24873.2163 12856.541 9688.0318 26144.5426 330993503 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 5552.7173 24348.4916 3142.6004 4095.0468 7498.8701 3210.0234 141457.6247 4231.2658 6639.0235 8518.5205 4402.7256 4402.7256 2503.6873 7509.1765 4557.5343 4117.3918 4820.6759 7121.3118 3149.845 3396.2075 6831.5187 2183.7028 9683.6701 4870.5034 6444.1421 2598.8606 4533.2384 4088.0853 2744.1441 7429.5381 119717967 arsc Metal Homeostasis Arsenic Detoxification Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 15880.4006 7498.7673 41054.5647 4212.7484 7527.0955 9717.6296 5652.9378 3979.5736 68469.696 6625.6205 3817.3422 6687.7636 5868.1367 5868.1367 28249.7193 10504.1719 7777.9593 22394.0204 6289.5837 3898.5078 4715.0729 8835.134 2775.0214 20317.4251 9227.8425 9297.5113 2564.9254 15164.0374 3471.2861 3570.2168 184197545 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 77653.9287 55705.7233 29065.336 42265.8076 29690.882 11194.623 33576.6827 45773.5735 36734.1438 39867.2814 36267.7172 31131.6237 824788.2497 40071.9066 94540.4836 39981.5283 25934.3389 25934.3389 29038.8221 48799.4158 33479.2154 37955.4125 37837.0405 48529.9714 19255.1694 21745.5035 46271.1361 28444.0511 107171.386 27925.8141 50145.8852 36927.3618 86282.9726 26907.8921 30059.6654 58227.8425 21219070 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11327.6006 8839.1905 14046.0906 31901.7746 5708.6027 10984.9589 8074.0337 6932.9444 7783.6263 13182.4768 6491.6487 184854.559 14838.1379 11702.3915 13634.7544 13440.8564 13440.8564 10067.008 19344.8854 19963.6225 90608.3497 58905.7615 13344.7094 9402.7771 9463.7418 16243.6693 7784.3483 31536.7437 14544.1334 16956.4053 7073.5295 11696.9902 12263.7858 19217.5368 34782.786 149912783 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 77295.334 27894.5418 11452.6454 47090.3066 25242.9905 29903.2253 40660.991 138449.0199 76783.4825 83024.7684 53847.4613 843909.0127 36241.1155 53848.7518 147840.2351 118837.839 118837.839 29528.2504 125539.9592 22834.3839 126785.8285 87929.6692 72264.8813 52058.813 55153.8623 41415.9068 39231.4865 274368.8978 42502.1365 126875.4891 51012.3081 59993.1134 45347.6627 54042.2822 119309.768 341953210 urec Nitrogen Ammonification NA Haemophilus haemolyticus M21639 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus haemolyticus; 22811.2702 2360.9119 7297.2499 3420.9239 3888.7444 3888.7444 8627.4994 4109.8138 2975.4865 4325.7936 1807.85 5253.6949 109452443 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21156.7452 38931.4175 30754.6306 4140.58 12804.7126 8806.3132 80686.0129 12928.7665 13369.997 7860.5257 19405.9723 19405.9723 3847.2547 20214.2153 9980.2475 17420.1471 27735.9495 9337.8701 4383.079 15475.4367 15625.7919 7645.1568 18337.1136 14589.6225 12917.5085 3526.9653 9761.6756 6352.854 4262.4639 12138.102 378803694 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium intracellulare MOTT-02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 47162.26175 4699.0637 7948.77795 17170.2125 11104.1951 8743.6606 10281.1855 12777.83295 191175.6487 15173.2443 15804.50875 19186.20475 11535.2282 11535.2282 7761.13125 17773.5327 9641.89525 26483.7073 23375.03435 27481.33485 11733.25975 14575.3073 7777.7261 18895.2149 13371.1879 11885.75365 25230.74585 13210.1063 198263971 ppx Phosphorus Polyphosphate degradation NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 14488.7587 5572.7053 25871.5331 17242.6027 9959.8447 23976.2484 13735.0313 11337.7825 18891.672 13253.8426 8968.6 301668.3227 19861.843 19048.2605 13955.0243 6857.4297 6857.4297 11066.5366 27263.848 13111.4482 12028.2659 19899.5801 16446.8948 7113.0705 16985.0685 71841.4357 11668.265 37741.51 13565.7423 15413.192 10260.7194 11173.3403 28403.6406 12129.2536 21583.3634 240170524 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 19739.3968 6410.8183 791373.1668 79174.6934 40714.1477 8689.1462 42616.9066 4684.5122 12679.5362 21331.8135 13674.5168 371464.9073 21193.0691 29562.2229 32433.4554 20245.5524 20245.5524 12588.3289 35565.6128 29957.9126 12613.5661 11248.1335 28381.0759 8414.2342 16320.0408 52914.579 16422.8353 50720.4582 44043.6898 41770.6539 25063.9316 20565.6131 10808.2124 20794.5385 23880.4933 377572030 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 37358.0454 10054.2471 20544.3734 29828.2201 15950.0682 9949.118 35740.0116 34619.4131 73911.6418 40628.3948 40827.6515 51131.1283 713643.4571 57587.6317 38498.4579 38848.2356 50802.1486 50802.1486 24028.3541 283972.5586 35783.8019 49501.9272 76506.9308 44787.4861 21519.3121 25132.764 44271.6938 41968.6131 145395.4353 57084.6585 50847.5284 24933.9802 41536.2001 46696.7413 32085.6545 43447.2648 222452494 nosz Nitrogen Denitrification NA Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 13960.7882 66083.3404 42465.3299 4719.8252 11667.9542 3978.6436 5329.2805 6256.6948 7526.6151 6500.7291 6178.959 9896.1121 10102.7393 10102.7393 4915.0026 39968.2653 6551.2329 4628.0299 7692.1877 4329.293 4406.2851 4051.4315 13147.5577 5217.9892 12531.7002 5436.7941 11108.0861 12310.3888 9453.1706 11461.1585 10568.8837 5120.1744 145322744 catb Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 183555.794 301196.7522 43558.4788 65416.2197 22669.8354 102034.9799 72566.7689 100065.777 113042.2014 62985.5684 160789.0805 2955409.5843 146922.2485 232115.1471 241966.2359 75951.4925 75951.4925 48250.0567 106793.8881 283911.1744 362049.6809 191523.8149 61262.1366 69347.1149 111148.6734 146757.2164 147766.0971 237468.8961 129390.6451 151427.2797 79897.0878 55538.3697 242325.0671 218473.7258 382812.4222 42521636 lactase_fungi Carbon Cycling Carbon degradation Lactose Kluyveromyces marxianus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces; 6201.8518 3459.7111 3729.8389 4875.5019 2519.3285 4905.5925 5487.1417 5273.1638 7798.6158 2188.8007 3124.6164 5457.0508 3352.8101 9095.0761 3584.8269 5921.0496 2149.9945 3730.5635 4996.1236 2158.4311 5038.7794 133913518 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 23682.8754 151610.7109 10557.3804 48766.0155 9994.2908 19293.1191 11078.5102 82159.6181 14473.653 11170.2611 34511.8097 465816.9484 15943.0281 14214.6576 24461.0148 38970.8907 38970.8907 9232.615 34441.0928 15508.3906 5596.9613 14101.2149 10248.6279 16193.3692 10932.9292 18763.1754 10987.0416 57568.3817 24609.7481 16947.2234 5461.8902 14328.7148 24438.0283 8678.1478 13351.1149 55791746 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 10152.8926 103151.5259 7280.9595 6592.0111 3630.3254 294668526 ppx Phosphorus Polyphosphate degradation NA Neisseria elongata subsp. glycolytica ATCC 29315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 21466.7442 59556.0362 28144.7653 34198.1693 15688.6546 160080.3566 119979.728 63029.2374 20269.4044 31451.0773 24243.4822 739004.1376 37119.0487 10085.9922 17656.1319 74252.7628 74252.7628 27223.0926 22663.3363 31489.9373 17173.9965 30047.5414 546386.1918 8995.9721 24509.5169 17103.098 21130.204 61802.304 14912.7602 31607.5765 14428.2283 26193.2478 20921.2346 11391.7803 42309.6977 378716957 ppx Phosphorus Polyphosphate degradation NA Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 10156.1631 7220.6441 6744.7693 14942.6908 7742.8118 10720.1721 8790.1169 7186.0926 7393.4985 7675.463 4429.2218 3907.3855 12358.8383 9277.2377 22935.9919 10407.9929 10407.9929 8753.0683 21171.1058 11644.9929 9102.3564 12735.5988 8815.5721 58415.7357 4661.3729 15349.587 3537.0327 27205.5816 21223.8666 15812.0596 6862.9499 12046.519 8459.6465 4244.9746 9814.0993 69276911 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 17725.9023 915833.3549 41340.3526 65577.171 5918.2735 11020.6743 50653.9542 48766.5427 655050.2473 43614.6878 45609.654 21442.1585 41485.0139 41485.0139 10388.6486 22414.7643 72390.4744 18709.6194 9242.1637 30739.7196 44415.1882 14268.5682 13598.4733 25097.0224 53883.0536 73067.5694 16569.768 48521.7392 43202.6303 43608.8314 8766.6776 383759238 ppk Phosphorus Polyphosphate synthesis NA Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 9985.4181 6886.9725 8836.1803 4807.8814 4541.0257 5687.9939 7760.7446 8967.5506 4153.9026 89705.5632 21748.8476 7991.5302 2965.2604 2965.2604 5146.1661 9078.4432 10141.8324 7146.8405 9966.8993 10704.4358 4533.6928 6479.5233 13525.2077 9914.6016 15148.72 7971.0218 11575.0217 3999.5333 12038.5834 7769.3015 3038.5571 7017.9198 116074691 Sir Sulfur sulfite reduction NA Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5678.3605 4665.5244 18974.9321 172224.4567 7175.3349 2797.9242 6197.7959 7522.43 4815.1125 181795.7807 9096.4587 65605.2693 12685.2477 6063.0475 6063.0475 7627.1309 17031.8309 63526.3511 61598.8651 9139.4253 8226.3358 3066.4305 7171.8091 16160.8017 11819.7497 27548.2119 176608.7106 17622.2024 6043.8609 9178.2536 6627.0816 4487.796 14460.7823 153887146 ophc Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8875.3708 5774.8975 3981.0742 4149.9277 2375.2464 4608.1707 3776.6426 9279.683 3882.2868 84642.0936 6393.176 4430.8254 4309.2018 5498.6923 5498.6923 10418.6503 22400.4281 8275.4738 12251.7374 10798.1923 79964.7434 5294.4409 3324.4979 5776.1537 3510.9272 23192.0242 5769.1262 7941.0821 5553.3264 5340.0383 7688.4256 4127.0853 35158.3247 256672487 urec Nitrogen Ammonification NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1118507.856 14469.0889 15679.6709 21611.3004 21700.1132 25248.2812 23138.2072 15311.6825 119685.7785 28967.6216 18669.005 15459.1934 309843.5539 17771.1969 27415.7799 30305.7882 109597.5107 109597.5107 15416.0396 37261.6246 27960.7874 27927.3556 27535.9387 25592.7663 13711.0591 36760.733 29243.9219 19604.3056 45842.4421 65637.5424 51304.3954 126418.3314 16257.2464 35149.4244 12880.1231 37654.9312 212703866 dsra Sulfur sulfite reduction NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 40925.9516 108388.3664 16713.4929 17773.0688 4858.3609 17922.3011 253225.885 7645.3586 31265.0074 30422.8723 31490.726 928710.7543 35183.236 33044.2427 23282.6549 19523.6232 19523.6232 21150.7212 146183.3319 21178.6115 20659.6174 156774.3238 48371.4945 32421.7343 26470.2585 28966.1995 109369.2137 86745.3591 19155.9057 31069.1874 15993.7547 38405.6355 20087.5155 34982.9689 23173.5284 105893048 catechol Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 48368.7735 38248.5875 25220.4835 31877.1951 10406.2534 28466.7861 46870.0351 54889.4792 33835.3522 40332.6866 33711.4053 770990.9859 45334.5938 44007.7703 52323.9177 56911.1766 56911.1766 26188.8456 64083.2024 34776.8416 71525.7357 69336.0737 38532.1848 72985.6516 30697.5299 49657.54 31737.0526 195197.9276 54674.0764 53883.7488 23591.8122 37267.573 44418.1166 29528.498 57506.705 229593194 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 41248.3605 16720.0984 13911.6821 10894.4165 10782.2631 39011.2449 24315.9011 10926.3404 20897.9045 24200.5832 24155.8575 454749.1713 20118.4349 27751.4583 14555.0889 11745.9988 11745.9988 52218.7196 23786.4716 19008.8755 46574.0042 42614.984 33023.2995 16992.6142 12343.536 112570.2369 27697.2209 83317.3683 35993.9191 32385.0327 11301.1054 20117.1856 26466.5952 22780.3777 24520.2956 347548541 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 26329.9117 475175.4766 13482.7061 14662.6566 22615.3216 17390.2018 13744.6171 14727.4315 24684.9196 34050.7972 14865.3831 407543.5778 31059.0668 29875.882 15011.3458 10370.079 10370.079 70714.9627 36227.1587 20840.2133 21763.085 25306.7275 25916.6061 13624.4239 11350.8003 20818.9223 12444.6458 55141.7643 19240.746 29400.4238 15764.3039 18344.0849 21668.6467 14903.5216 29253.946 380512214 amyA Carbon Cycling Carbon degradation Starch Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 5060.741 20856.3856 6772.7511 18019.6862 14436.4131 3257.4373 5159.8675 3181.7615 79112.8832 4304.3772 18263.9487 3921.3105 2787.1285 2787.1285 3480.4872 6755.8753 4029.0626 7375.8837 21760.067 4235.741 6265.1609 6299.4759 3629.5213 92631.3609 3059.3386 3279.1492 4564.9805 71383866 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6245.0981 5302.3072 6117.2548 18732.6347 2942.82385 7445.81675 3021.0102 4573.91685 8610.9447 4836.6724 128002.94275 5732.01105 4622.17745 7439.4721 5649.2355 5649.2355 3809.69845 17400.31255 7022.19185 4540.1675 116311.88995 2248.4305 4837.35735 18207.2862 7613.7062 13711.28265 10556.30815 12496.75445 6281.4686 7272.8824 4656.744 2705.4025 32440.32295 63081906 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 14584.6959 5781.8383 12816.8209 14324.4999 4576.6153 8650.6427 4422.4004 7226.021 18464.4 7404.9723 409947.6808 165054.4875 17956.5498 9989.5773 6328.4589 6328.4589 16804.8101 14626.9208 22329.6775 19120.2051 14583.2039 166190.1728 15965.6085 68609.3888 21160.7744 5909.3338 63214.4475 12954.6407 19222.2876 5548.3994 7521.6604 10748.675 7258.4331 19911.1211 299123701 urec Nitrogen Ammonification NA Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 75430.1888 12588.7818 331631.256 223197.8344 8115.2369 14440.0024 74052.1799 21404.5653 67915.813 48388.2322 56132.2671 726046.9133 63470.2718 78287.1397 124036.8852 48568.5956 48568.5956 48418.759 118020.3922 44649.0626 56748.7506 70178.2028 56552.1173 33118.8 35729.4449 46821.6993 26971.671 121080.0894 45668.4923 70474.742 32401.6644 52655.5775 52745.4117 27371.1391 110848.1639 109457186 cmci Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 19111.3173 6264.5537 383007.912 8071.665 14285.3923 21672.7317 34973.9737 13767.7747 18398.3437 24209.0805 224394.2403 19880.6291 33661.6098 23077.5209 20905.4387 20905.4387 5781.7928 53296.382 44895.1417 17179.2107 86148.7338 59271.6394 23209.2812 18029.5274 20053.3623 25155.4455 56891.6868 27819.483 64021.0283 10556.0112 11969.5281 44026.1529 11157.3067 32602.4101 156032806 glucoamylase Carbon Cycling Carbon degradation Starch Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 17944.5614 4783.058 9669.8611 3709.8838 13672.3431 12395.1767 5643.3376 9824.9385 4409.5021 4653.2944 2870.891 2870.891 4118.0031 9233.6495 7587.0101 5853.9053 6074.9519 8358.5604 5271.8977 3657.9265 8765.296 2661.0839 11270.5069 6862.9292 10310.0948 3389.2496 9943.2089 8318.5697 3119.4911 388435796 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 9342.7169 593262.8775 13768.8059 11772.3391 8351.3275 5468.9675 3465.2789 6388.0842 5104.1481 107354.9482 7242.0502 6786.1635 2876.0874 2876.0874 3512.8173 7846.3397 9012.2693 8264.2554 7787.1933 94218.443 3148.03 7878.9075 5328.8607 11380.5666 10362.0853 13661.9255 2957.232 7043.8421 3216.8682 634009.7208 77379107 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 31937.6387 55341.4077 20599.8837 7177.0754 12992.8429 113560.2262 5505.0824 6639.3218 5785.9948 6910.8456 6813.9321 181046.7822 26921.6583 16270.4847 12938.1717 5909.0408 5909.0408 7397.1438 17565.4607 15555.3697 19658.1663 15915.233 24075.31 11879.7491 10055.2899 10750.004 8215.5343 44918.9575 65320.68 17184.2461 6802.5039 8554.4884 9576.0928 7358.5066 16050.8571 269306246 ara Carbon Cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 16747.1084 13457.9003 16739.4538 48812.3798 13507.8656 808963.1287 34694.8615 16247.9996 5806.6826 31819.0151 18104.3729 321983.8996 19964.3709 25281.6381 30242.5857 11317.9176 11317.9176 11241.2741 19407.0862 12013.654 13837.2099 101914.9812 12525.998 27183.1339 11230.699 18511.3805 16264.3159 108362.5998 29714.3665 19920.2568 18217.0892 19645.9277 13963.3573 17423.2244 22175.267 42561627 pcpe Organic Remediation Herbicides related compound NA Sphingobium sp. UG30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 14704.1114 10016.7469 7282.511 10172.2426 5500.9037 80396.8601 22927.9869 20190.4163 18441.8977 95123.1083 20169.52 183224.4499 16303.003 206879.6202 22858.8202 12196.3075 12196.3075 9283.5983 23498.7756 16950.0862 14977.1547 18791.224 19251.905 30156.5605 13848.1167 14211.7004 12353.7021 42899.8387 80148.4108 50163.7775 11290.3804 29135.0334 33590.8047 8912.5986 22035.4253 254436322 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 12668.0681 9624.8338 13061.9746 15859.8407 11108.449 35244.3241 5609.817 10845.3202 14153.9095 6682.2415 363877.8753 16233.3901 17912.5146 11267.032 8334.5563 8334.5563 9264.6527 18805.242 16518.5478 16255.5251 12986.215 21688.593 7392.8801 10181.4298 17773.0015 45085.3989 86683.4914 14287.8719 16788.5611 16470.5324 8290.2767 9856.9552 7337.4547 23035.6758 296139486 terc Metal Homeostasis Tellurium Detoxification Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 8103.3764 11367.4916 21291.4553 2742.8842 6513.0759 22687.6411 5023.8426 6451.2492 8112.4007 99418.1391 5128.3796 13593.9677 2548.8454 2548.8454 3738.6859 13795.8313 4697.6539 4596.4398 7711.136 4968.7945 4449.7829 11548.0012 6795.5802 10253.4913 3879.0424 11081.7594 8173.1346 6085.1842 6026.0579 4772.4895 3463.8593 8420.57 171057132 poba Organic Remediation Aromatics Aromatic carboxylic acid Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 60769.1974 8189.6873 12744.8534 25983.0559 8242.5271 11653.6056 8454.8935 20038.9435 27832.68 394814.8703 8243.5563 25551.6602 9872.165 9639.9404 9639.9404 8329.5987 18011.9016 6942.1188 13079.9729 17000.1915 7576.4808 24072.7545 8821.3884 11492.7273 8518.0435 32062.4152 10834.663 37269.2075 6364.852 11130.0656 15129.5947 14656.5169 15162.3206 405555067 cpna Organic Remediation Other Hydrocarbons NA Cecembia lonarensis LW9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cecembia;species:Cecembia lonarensis; 9076.7057 16647.9389 3380.5632 7791.7167 4320.8484 7853.8092 7872.812 4988.1273 244063.8538 6191.5976 6255.5922 29199.1655 4059.6224 4059.6224 3498.7049 8805.7149 10070.5843 4866.7156 17805.2702 12630.5838 6512.437 4720.4467 9208.1893 3849.7323 12413.2769 9172.0075 10538.4441 42197.8725 14089.1408 6592.3439 12746.222 7157.0049 162072783 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 46604.0234 8921.596 7979.9927 2542.2137 2189.7401 6700.8815 119958175 tfth Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 4733.6994 5273.0267 4034.1321 5219.7063 5107.915 11202.3427 4500.6703 4272.0109 8307.453 23202.7928 4747.3924 10808.2704 2106.4568 2106.4568 11763.6296 4978.4653 3500.14305 10757.75205 6751.6211 14323.8247 4614.9178 14838.0058 139478549 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 23463.9197 5590.7044 21774.149 10551.4948 6031.0271 8243.0958 7759.2327 12224.2075 17011.8226 72509.989 10615.8014 21969.4926 15435.2377 6469.8772 6469.8772 11312.7795 18796.0979 13676.1085 7231.9672 45076.5444 11686.1886 8368.8539 8588.502 15689.3127 21323.9312 27771.5407 13252.4376 13767.4742 5951.4729 9740.4334 31330.4302 7135.0726 7803.9243 298554195 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 41844.6345 35212.8481 13864.3712 26549.4992 5388.9375 6704.6756 18707.1052 7487.1654 27552.5813 18887.3513 393848.6164 10267.6285 10465.2654 20230.743 20369.3111 20369.3111 9631.6167 20599.7653 14136.7118 21748.6204 10391.507 893631.6628 13456.146 16342.0521 19088.0362 8331.8208 24205.8453 18040.4607 16005.5536 12855.4638 11758.8054 28803.3396 9842.8514 16853.0473 58176536 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 25940.622 10717.6425 4234.5048 20795.9798 5573.5628 4243.225 9418.5111 6938.9882 6582.1708 70453.3365 29841.5757 244761.3477 16049.6573 9365.5577 9965.5856 25802.6063 25802.6063 11884.0861 18789.742 9853.0787 27500.3904 28727.9964 6822.5748 5101.0577 19706.7218 25548.8063 7563.5408 25204.7717 17320.522 44204.9719 8033.8232 17589.919 41695.449 16149.8422 11503.2719 187483925 cellobiase Carbon Cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 207069.265 19912.1208 18193.5151 44258.2354 33191.6112 6695.9416 35135.2551 63304.9616 20192.4476 50410.26 37319.2891 36305.7064 942184.9943 62549.5223 72973.0392 68559.9801 30899.508 30899.508 28475.6586 79924.8288 34486.677 38577.486 49825.4429 46198.3084 23349.8355 26751.063 36949.5542 41752.4816 101875.7074 48836.4389 52833.2354 27295.2011 35755.4895 36678.0451 23619.882 50803.4357 326952758 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 73181.0172 204880.9904 28624.0015 55016.5529 6023.7274 33271.9161 35757.7137 41343.5655 46842.0894 39781.3801 37046.6461 585062.6175 61535.4355 31022.7265 59381.3082 35473.5235 35473.5235 22772.2847 72075.6148 28709.0174 249368.579 84507.4402 48775.3296 28792.5069 31744.1183 43495.3879 41161.9938 109472.1743 63388.2814 57240.6091 29964.4757 48497.9013 42699.9518 28874.2158 68888.4892 90419896 arsc Metal Homeostasis Arsenic Detoxification Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 409138.1405 55297.5047 296966.1755 164267.4568 301286.0031 73337.371 80898.0483 445132.6642 159161.7589 217736.3682 240971.5188 259179.8466 8189239.526 355178.0989 258909.3971 549891.5364 350814.6569 350814.6569 444604.4799 398128.0472 175298.476 1201948.742 255947.373 229208.8442 168504.8269 187837.5553 227882.1867 158157.1686 383612.668 139708.4788 238385.7287 203801.1624 162822.1215 246961.123 228266.516 420037.1974 260415177 fccab Sulfur Sulfide Oxidation NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 10994.3957 14419.6341 7529.5982 8592.4639 6274.7567 10675.2539 5090.8949 6542.1384 19415.4163 10225.6954 287340.8653 21663.0281 16115.3979 5926.8404 4628.1098 4628.1098 6360.0111 19982.111 14487.8611 12756.8975 22825.2782 11401.3355 6503.4931 8961.2411 16245.212 8503.8191 22217.5438 15628.4372 13929.834 7774.8279 12234.0446 18034.4901 8788.9188 14204.6087 310657990 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium sticklandii DSM 519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Clostridium] sticklandii; 4466.2049 17221.3688 7167.8797 7167.8797 374296205 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 14495.5727 5934.5274 9644.2056 9545.466 6734.183 25372.1846 5590.788 7488.4223 10968.792 5580.1791 197201.8638 14546.4975 10512.9038 5874.4488 10432.7245 10432.7245 11143.9215 20891.3411 12132.0747 11241.4628 16325.3862 14656.6679 28045.336 9144.7792 13466.5556 5210.6624 22302.9589 4721.5173 17474.9554 6480.5023 6569.9531 7903.4956 5225.6841 15254.6959 336252094 rgl Carbon Cycling Carbon degradation Pectin Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 8712.1387 3140.6734 4160.767 99966.1708 7399.3932 5139.795 2804.0625 94073.6883 11066.6599 7196.3885 4456.2336 2812.054 2812.054 3846.8868 9947.0415 28287.2566 10912.8995 52953.269 9919.6014 5796.4603 4518.3465 9608.9598 3209.738 15252.9313 12253.8233 14827.7084 3941.4914 5573.4587 7370.1904 4854.751 8420.0898 70982073 rgh Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 63863.4333 5985.3738 58178.1005 8039.2965 3114.4306 4176.1972 3113.1029 219215.6854 18680.4448 4133.6962 5095.8899 5095.8899 2691.1034 12977.0749 7331.0246 6040.0068 5588.4468 4437.7533 2452.6341 3959.9335 9375.689 5233.1597 8901.5007 9374.7383 10005.9348 2010.6625 4984.728 5348.3676 5845.5738 5918.6647 238726891 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 4748.2063 6077.1513 7186.4775 11333.1656 10319.4102 182040.5167 5288.052 12983.2024 8722.9541 4924.9649 199017.4182 9848.0238 10855.2857 6063.2109 4942.1582 4942.1582 5270.183 13877.3626 10789.5224 7996.6693 9327.1061 10121.3682 4382.7917 15186.8883 13101.6958 140994.7892 21782.9356 7519.3856 10741.2998 5961.7391 5275.3821 18613.9117 54735.2229 12112.4445 323364480 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 6244.8701 8592.6131 1981.7237 22419.5797 2988.8981 5313.0557 3482.5741 3482.5741 6304.7182 4818.2574 6239.0402 3890.5088 8798.7733 10848.1954 2220.4789 9749.1628 5529.7844 4499.8819 3760.7169 4360.3086 4989.116 5042250 protease_serine_fungi Carbon Cycling Carbon degradation protein Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 30412.5742 264152.4708 17468.3311 74061.4504 32976.3694 13221.119 82880.9703 21053.7139 38824.0333 108713.9365 65028.6015 918444.8028 69121.0931 109328.6831 69254.9117 36862.0961 36862.0961 90904.1595 95524.849 54550.3596 30646.512 93338.7941 410806.6469 49740.3107 76936.1451 50983.5666 61964.3116 98192.427 28013.9343 64634.5318 41262.7866 79057.6677 153335.7641 35008.9479 94884.5823 383826212 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 43867.3391 66392.5641 14813.3824 14936.6151 152160.5213 98848.3796 102606.9668 10950.0626 32878.882 131777.2194 62791.8546 383347.4171 32789.1045 72151.4315 44195.2508 109231.5923 109231.5923 31266.1074 39036.5316 16538.7264 21380.2237 161971.547 21932.9883 50476.2136 28098.5215 35563.6827 63032.5935 69822.1883 87355.4667 70579.1148 49130.7082 69876.173 25676.2322 17323.3765 57700.132 116622344 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 70521.7114 11525.8102 27482.0819 91440.8923 43582.7016 22716.4842 44117.1216 64549.4303 34079.229 66851.2191 57473.8565 53944.3959 859549.5963 48645.7121 74811.206 65878.0632 73248.8571 73248.8571 33074.2937 63458.437 27499.5504 78667.5954 53199.7741 73949.4962 23199.417 36390.4443 50623.733 42006.08 98686.4246 46421.9267 58027.3777 25425.1116 45770.2979 30022.7237 80683.2131 59467.5501 346647842 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas axonopodis pv. citrumelo F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas alfalfae; 6064.5692 304401.5082 5027.0509 5604.8923 3087.4052 15087.7416 6955.8105 25411.6432 115422917 gdh Nitrogen Ammonification NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 74228.6806 78256.5823 43756.2422 18618.91 8782.1021 7282.2241 33999.4 34397.6711 51928.5516 24422.4467 36584.5742 95080.5211 443217.6121 114889.7707 39893.4521 113547.9357 40929.1407 40929.1407 24109.7642 60924.0467 166829.0644 42967.2791 45133.9206 22413.7805 57543.4628 34573.7059 61043.9716 25557.8389 66226.6495 48388.2922 102977.8207 19626.5996 56570.0176 42662.2661 31529.1609 49731.7972 146396053 arra Metal Homeostasis Arsenic Detoxification Geobacter uraniireducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 58819.5112 280423.7705 15466.1835 131305.4235 9866.3485 11633.1492 34791.1577 9394.3477 611840.9266 29708.0754 17852.1695 321714.1653 26965.3392 56766.2683 22433.8863 28869.0716 28869.0716 12782.2421 27524.2076 22566.6878 15721.5026 15168.9061 160338.9077 8815.013 13244.9894 30096.5735 10713.2955 45008.9863 14626.1178 28466.3963 11178.4695 34211.6095 15504.087 6344.7056 11663.0755 166408384 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4068.8514 5232.258 23380.905 7086.7655 6623.9336 3439.8062 13134.3371 379044621 arylest Organic Remediation Aromatics Other aromatics Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 28593.1032 50250.1737 18047.4291 25986.6352 6484.6196 19851.5096 28890.7501 23784.2072 22570.7392 40582.7566 24987.092 556762.9055 62260.3099 57203.3424 134501.492 64558.3117 64558.3117 21697.2338 43710.3323 24772.3639 73363.6867 45373.1019 54273.8295 22520.2052 26890.9753 40629.1591 71077.6562 149144.0912 40544.2844 47471.2455 21271.2442 74283.957 57299.5895 18798.2234 92435.2787 221532319 dehh Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 11124.6563 6169.5485 10549.969 11083.9124 10004.5354 7492.1024 4516.1519 7807.9895 11351.1656 4862.7535 273164.1579 12868.0023 12611.0427 45496.4044 3645.8208 3645.8208 7015.3279 19622.2043 11813.0737 10893.4156 11745.826 9189.4801 9373.361 6447.1279 13838.6854 5845.7214 21428.0365 6334.151 13266.027 6713.2259 7857.5308 10122.8315 4530.1498 13584.267 91188251 ppx Phosphorus Polyphosphate degradation NA Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 4958.0138 42001.9524 2363.5169 12935.2554 4039.2424 3770.5756 12783.6512 5678.8298 4140.8024 18183.9537 10472.5307 2627.1436 12425.8449 7741.791 1798.959 4004.127 4518.9416 3005.7691 118590430 B_lactamase_A Virulence Antibiotic resistance Degradation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5870.7097 19392.6002 3840.5767 5210.3098 7729.3656 8621.502 6286.9835 3814.2259 44762.079 10353.3503 6346.3951 3925.3128 2784.4738 387968667 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 198510.8999 66011.3714 181582.6704 65593.3826 13072.6143 266682.3953 11962.3948 19293.9855 27379.2573 18060.6458 31599.9505 281170.6183 13783.3013 21544.7879 44436.6985 11761.8712 11761.8712 26634.1766 26168.2004 54154.4098 22859.3068 22297.8209 20504.8529 13977.9449 53572.35 31916.9963 15310.864 34241.5748 20059.1565 30450.2979 11160.4372 12462.7237 14666.6007 10378.579 12607.5178 338232898 chnd Organic Remediation Other Hydrocarbons NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 16665.473 7961.7297 4587.5746 20120.3827 20864.592 18392.351 19867.6104 11886.6055 10071.9856 18422.618 139056.6497 8222.1312 35665.4049 46895.3143 30355.0461 30355.0461 157518.0348 44714.8472 13534.9253 51548.5568 245951.6884 9854.2805 24491.2297 22926.153 16734.3105 24668.3627 56393.0035 28538.2305 73364.02 10573.7417 62416.6884 30898.3845 11408.1569 15108.0104 84502240 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 89105.0994 9252.4719 4559.9351 10164.9657 5045.1647 35443.6289 78525.611 20890.1405 12474.1755 90336.4897 19432.9496 316745.1311 33853.023 21553.9322 51494.1785 73535.4768 73535.4768 19585.6454 42881.3444 15508.8646 18747.0926 31141.9942 66160.3389 10488.5491 14757.5057 12252.5144 14126.6481 49086.9642 27908.7636 37325.7391 9967.552 17001.1257 18315.4825 17520.4294 22986.0993 39566 cda Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 16428.0642 15401.4457 2314.0061 9817.8147 5517.1671 5788.3634 4266.538 155227.0246 8699.0154 8502.6997 5470.6969 3560.3333 3560.3333 2646.3313 9318.7193 7159.911 4554.2582 6464.1511 5739.7577 4805.1714 3638.5978 9362.564 4274.7931 10848.9924 6377.6798 8860.1134 3162.9576 5157.9992 4533.6029 2735.0637 7145.1768 308178074 inulinase Carbon Cycling Carbon degradation Inulin Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 9531.6779 8488.687 7754.4656 8810.8876 19941.1012 4881.5697 4781.5105 4331.0559 10768.7847 8926.6663 8336.2105 255649.6375 11895.547 11845.8622 11708.6762 6469.9363 6469.9363 7696.0378 20514.4263 9766.0656 11150.4005 12383.5982 12512.6285 5430.1266 7133.718 12261.629 5805.8107 40194.1604 7759.7574 15682.5895 7275.7038 8835.9265 8378.1062 5561.8909 15032.8966 309395629 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 160624.3478 18113.6577 224309.2678 66504.2418 63796.5677 8293.09 136392.6077 51405.0509 49183.1194 67265.7297 146390.3328 123649.9003 1709517.5486 64702.748 101063.0792 123865.0573 116486.1343 116486.1343 126236.2938 145994.9073 56548.984 73993.7714 126567.7639 74099.6054 88309.4393 76946.2239 107630.3621 72316.8227 283083.804 106812.5815 101664.8357 56543.8366 92778.4497 142995.0696 60717.1359 171049.5263 160346615 proO Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 13911.2814 7949.5454 20937.6494 2352.8353 6014.1055 5309.6738 4387.3629 15661.2246 3987.2939 75357.1799 5502.7192 17564.8039 9721.863 14796.4906 14796.4906 6077.8345 17332.9811 4929.3368 8230.7426 30813.1918 5647.0795 5884.4134 6400.8364 10741.979 6067.3728 27009.4998 36010.9373 14294.9706 6419.2461 8541.2265 10903.7915 16224.1973 6266.6986 45386139 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 8562.0449 6889.6976 11968.6942 9450.7797 5752.8144 9347.4039 59767.5683 55333.9137 27784.3054 149561.5076 16489.3761 12429.1968 23000.9048 10369.2661 10369.2661 5979.5878 18477.2273 7080.5845 23165.0369 5317.2849 34975.6705 8455.8085 45610.9038 11774.8178 16201.3398 21083.2777 14343.5557 13999.616 5200.9575 14153.8766 7862.5304 6202.3156 8648.484 388487509 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 5708.5446 5207.126 8018.6885 2122.2283 10663.1963 9382.4521 5909.187 6260.1463 11759.7003 146187.3836 9530.8494 7118.3462 7611.4679 7589.3453 7589.3453 6545.4893 9760.9707 5466.7842 4103.0261 7458.6129 5043.9675 46412.7095 6727.626 16527.2414 3590.2061 9157.0218 12247.832 14175.3485 3178.5323 9605.5408 12265.3588 2306.5285 377820817 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 74493.901 12716.5993 26837.5075 38764.7868 259247.5216 54129.6537 39390.8005 18542.8075 19498.0051 31504.2503 758218.0022 27231.7885 25606.3934 297671.7384 36807.3089 36807.3089 31205.889 58500.0729 33351.2644 40176.4315 44734.4694 24585.8677 23629.3851 20279.44 38167.7607 25900.8163 54491.5686 44277.2717 31893.7324 30152.7295 20919.7424 32023.8532 20396.7942 32633.2638 294338564 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 28303.1338 10469.3508 10325.6695 5289.2253 7306.7617 12992.1005 24157.2111 130142.5563 20532.9309 23186.0464 1056764.9234 19640.6019 12936.1547 138909.0865 12793.155 12793.155 71544.1783 24830.9298 10375.2382 6844.7111 33684.2681 10685.2924 49642.9056 29011.1772 38490.3016 13325.9225 492248.935 31388.9674 74626.6439 12899.7889 10852.2908 159545.1397 72255.7896 29937.6273 311221468 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 26661.9418 12511.6362 18888.2978 14907.8477 10872.411 36130.8547 14025.701 8036.1805 14688.3255 29795.7404 9963.4108 364864.9038 20355.2266 36796.4863 16607.9402 18887.4773 18887.4773 38678.1801 22584.6025 19092.4166 17966.0451 23424.8604 25424.5142 10139.0876 12045.4238 22586.2071 9257.0796 28938.4604 14428.4836 38601.9023 8860.1045 11594.621 12799.2587 9109.0872 38929.0683 295431628 vana Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 14440.6261 13689.7113 20459.4156 7094.8421 16924.003 9682.1531 39132.2257 4595.501 17276.9711 21221.4164 6507.6904 190371.019 115112.0188 17014.1937 12956.025 17305.3259 17305.3259 11050.387 53854.3305 19052.8442 15060.9882 24321.1949 23225.4448 7923.2651 11514.3964 17412.8731 43316.516 39886.8724 14855.4125 22636.3423 7906.8689 11339.3122 18744.5876 8410.8327 16214.5797 254262268 amyA Carbon Cycling Carbon degradation Starch Enterobacter pulveris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 74097.1379 24837.4884 373562.6852 69278.2614 44218.6915 26911.578 96545.0743 41254.9157 33186.0654 42472.1622 46502.5722 42454.3427 1031130.6176 51184.3563 63620.2485 99453.0231 35329.0584 35329.0584 27702.2865 65585.2671 40374.8904 1458984.433 52540.2559 100659.9724 29335.4589 29794.9655 60075.5094 32355.0988 99122.6422 45176.0777 60230.354 29047.6386 43045.9576 34053.8283 27815.8867 73378.796 237878224 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 48210.9024 7953.4209 187760.0799 413978.3687 4243.2541 5747.3833 6900.8901 10871.3767 7582.4797 346473.2838 6867.8543 9037.1954 12424.0035 13248.1233 13248.1233 7415.926 22663.5287 8590.2724 40962.0158 20315.588 11064.4215 36122.8104 9713.8779 14605.4731 6691.3478 34269.3796 30998.509 11560.8228 17508.7317 11775.3236 7852.2373 4444.6859 10064.0392 145216163 tehb Metal Homeostasis Tellurium Detoxification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 12172.7181 64759.504 39294.3221 4266.6522 2907.6276 5242.326 5379.2256 4719.6213 4764.7579 80038.2 17820.3195 38604.6187 4736.8524 4736.8524 5109.8526 7063.3338 4455.0923 6963.7756 10036.67 11531.8921 2807.0702 5282.7094 12671.3543 5866.3061 15431.1079 11268.7805 8848.5151 3386.9475 6697.7102 10560.4694 4873.9429 13748.6977 344943304 arsm Metal Homeostasis Arsenic Detoxification Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 9663.9098 1030950.1069 11834.6606 11882.9122 9881.2524 5787.7715 8060.045 3504.9854 8378.7038 9460.962 12197.3662 157362.1597 7745.7392 10380.016 14273.0117 6326.975 6326.975 5732.5934 20478.4739 10016.452 140043.0066 8480.5771 6186.4008 6294.6431 6528.1857 13425.5198 10704.7705 22050.3892 7714.4267 17324.7646 7904.2432 19071.0614 8189.5843 5920.9554 12658.7516 392721330 tfda Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 1054960.5351 12472.7956 4609.394 6551.2297 3384.8864 7952.0757 9051.578 5346.4611 172152.642 12021.7804 9453.1584 28714.6387 7167.5416 7167.5416 8223.0961 48574.6663 15133.3357 10853.7957 18532.4471 9361.6498 6444.3784 20278.3104 18677.267 5150.1628 35111.6041 19146.3273 17487.8359 4431.3531 32627.6254 28239.7649 7283.0612 19276.8815 333897898 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermoanaerobacterium xylanolyticum LX-11 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium xylanolyticum; 15452.2473 10165.6007 12820.6316 23949.7691 10740.051 11211.2262 36801.5726 10307.6567 21492.8598 11197.868 426332.463 15594.2208 14052.7172 17074.4495 8557.5353 8557.5353 11361.6762 24853.0577 21262.2851 13967.9121 20245.7061 32700.7168 9078.8812 10638.3984 19708.2701 13951.8644 36326.5659 21699.2724 31657.575 8664.7111 14714.0898 12379.395 29217.02 27284.032 150036110 soxY Sulfur Sulfur Oxidation NA Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 218564.8151 49307.2031 76361.5464 216576.7888 181936.8985 43498.8689 103783.6757 107988.01 111926.6092 159203.1205 83359.4765 91999.4751 1477697.7188 102992.4972 132031.3285 114316.8162 134992.3952 134992.3952 44424.1918 124943.3664 78099.2438 143533.8929 152303.8036 98450.5496 70468.6275 67935.6249 124239.998 81985.7819 179096.8606 123101.9187 98977.0629 185576.3278 91175.9116 91223.5256 47114.1544 179967.1252 329904943 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 4884.7251 13402.5846 10266.1016 2952.8773 210385.3031 7470.7296 7470.7296 7809.0331 6592.9139 5758.4234 3026.6209 7081.4526 3488.7735 8504.5401 44626.2626 6657.9117 2374.8674 4011.7959 4952.6358 2499.6592 338741679 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 27395.7146 13667.799 18134.6604 20206.7132 19183.345 36749.476 17439.5168 19370.7355 14020.2528 48989.2033 16413.6179 17764.2084 463420.1924 23652.4933 28013.0425 17686.9139 9243.9144 9243.9144 14007.6099 36559.4805 18614.5529 33473.322 30507.7127 31310.2523 13050.5492 13051.7939 30720.4989 13557.3081 53356.5528 14237.3744 29357.6548 10702.8969 23299.7536 52846.8817 13510.3719 29765.4045 255292536 xylg Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 40118.7884 12807.7275 28579.77155 19815.7381 32610.97855 42287.65815 25917.5191 493497.9535 28479.87055 19699.71745 19699.71745 37944.0879 24354.29275 25774.5908 23336.6341 43531.12375 70411.83115 45998.16295 64861.9228 18830.2875 28694.87255 145570871 atza Organic Remediation Herbicides related compound NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 3933.5299 4385.2823 158138771 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5085.9662 2198.075 2930.3288 111968.9532 4187.9785 4196.3599 2000.1112 2000.1112 2600.2617 7052.9159 4174.4598 4031.87 5784.9616 5624.6097 2227.0987 2227.8335 6028.5366 2511.5143 10110.3371 3730.4646 4809.164 2313.5685 3301.8316 3752.1574 3705.7997 5338.179 329114754 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 64896.7704 4034959.2754 1174172.4842 6854.3801 6075.2763 4125.3547 8035.1947 11096.9067 105046.2861 6228.076 10928.5783 4184.2982 10030.0738 10030.0738 4613.8967 13239.4624 9759.4719 8313.2611 107480.9364 12802.2036 3603.3826 3899.2974 5677.1871 3750.012 7402.3751 7407.5415 5410.6091 3637.0588 88225.9781 5509.6841 4074.6727 395307.5907 27351775 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5621.3311 6219.0369 115204.1254 6324.3128 3628.2241 2953.5882 2953.5882 3345.8003 7431.8286 5372.6132 4455.984 5077.1715 7917.503 2934.5367 7761.3552 3319.6369 10901.5209 5325.1104 8750.2299 2082.0583 4410.9592 4023.3879 2767.211 6949.2723 238484799 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 3820.0142 4291.9335 3685.124 2469.9257 3943.7321 7490.7926 5102.796 8545.2333 7627.0825 3957.5041 4183.4368 3228.0812 82715329 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 15214.4555 9621.2245 14868.664 14154.7566 7794.2625 18147.5169 14249.464 9283.7872 13876.961 12870.9229 7094.7655 370849.1913 16105.3493 16051.7806 12926.3478 8042.0673 8042.0673 10618.1252 21318.3862 16242.8145 14479.44 26159.0865 27949.771 7205.2264 8390.8184 19546.9113 7225.0173 26372.0733 7929.0662 20252.6096 9298.8443 9693.1719 11878.5677 8653.4849 23327.2682 395341367 tpha Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6911.5019 14788.0062 9358.2542 16976.4134 5286.4612 272337.3892 3734.4253 8757.2844 12931.2719 5583.4188 120770.1676 10788.386 8191.0212 5212.8562 5610.2719 5610.2719 6783.8788 16678.8693 6135.4821 13075.8755 7809.1847 8830.488 2362.4241 5169.934 9849.4164 8963.8444 14175.8023 7195.6556 16104.9483 4632.1632 6370.4195 6218.8007 4965.0748 10441.1646 401773948 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 10596.9166 11033.359 28943.9172 5977.8084 8268.0787 6641.3189 4150.7958 15300.436 8666.688 162505.0644 7622.0996 11999.7676 9444.8585 18032.8365 18032.8365 19405.0223 18186.1391 6215.1666 68647.8569 24950.8617 13005.0463 8450.6137 36121.926 16074.6532 4752.0171 19690.5519 37199.813 22152.1959 7307.9723 15708.5854 12123.9278 19156.9425 6914.0761 219868864 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 21825.2767 14142.2531 6315.8703 8731.5098 5294.4037 5493.6387 18129.7375 56397.8732 33658.6404 16731.7306 67007.3149 272818.655 21484.1862 24785.1954 9114.5585 38774.6535 38774.6535 5533.214 36129.7005 7378.5157 6278.8294 56988.9947 7605.3257 8447.5921 24418.0896 14389.1356 6004.0654 26040.6109 12127.6045 10861.974 5448.6289 45639.8501 16179.9145 37666.5712 21151.9885 209401902 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 57350.1859 11924.8559 29433.0165 25485.036 23457.1664 5025.2558 21877.273 21801.0976 26757.5049 31751.7734 63959.1251 114866.8758 1538315.7735 51837.9457 31630.3049 42584.9984 36126.0891 36126.0891 72929.7957 70009.2659 42638.5275 27614.2182 54740.584 466954.6099 22782.3524 12786.0306 36841.4316 17924.7783 91432.0796 50429.9578 43506.7805 20272.7011 34678.3634 40834.1985 20740.4493 51375.2425 322378686 terc Metal Homeostasis Tellurium Detoxification Helicobacter suis HS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter suis; 106305.3683 19193.8541 16229.2132 5914.7141 9883.6707 6977.8815 16033.1462 4487.3204 13190.5284 8718.8078 15438.8746 21554.3437 218932.8834 13624.2963 13124.7298 3854.7107 29007.6364 4186.0562 4449.4195 23202.9994 9183.3928 5901.1221 7360.3808 11042.8448 6895.0384 22094.4086 23193.6585 21533.3473 5936.8618 9326.7435 14885.3328 11187.2787 13022.5268 158312423 arsc Metal Homeostasis Arsenic Detoxification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 72874.3982 15128.8314 85045.8974 54237.1749 40487.0334 765003.537 132360.679 13617.7337 48282.0196 52025.1859 38926.8531 1423032.1614 38910.7669 94983.4652 104880.6297 25672.7928 25672.7928 32072.09 95971.483 65925.4289 101337.7612 80770.1859 53826.1121 99043.5751 35382.6749 71435.7555 28565.0468 152462.4139 124075.1638 80283.3987 19025.0971 53984.7379 40150.9805 32153.5211 53076.3695 288869027 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 15070.1543 14320.2867 14916.2154 19474.4098 12639.2358 16380.9214 6060.4748 9784.3604 13063.946 5030.522 198490.7106 22188.563 10038.4551 10228.0075 7056.4389 7056.4389 8341.0504 17134.4 12796.6819 15108.7722 16128.1343 18618.6334 5363.261 5552.4801 16821.5968 7193.5783 29676.7427 11964.4562 16316.91 9353.3101 9832.8976 15671.9813 9984.4528 23698.0679 359342525 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 4218.2756 20092.9726 6769.2141 5002.7519 2119.7329 7257.6516 4991.5898 4789.0407 252645.0003 4284.6236 6576.3484 2937.3394 2937.3394 6272.4515 11392.3765 8075.7601 26978.7457 8312.4422 7948.8442 4454.2133 5102.8559 8954.9976 4293.9153 20239.778 6088.2232 9203.487 8928.7154 4594.0226 15170.1763 4152.4171 10557.7603 119674858 amyA Carbon Cycling Carbon degradation Starch Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 19527.7415 5988.7429 6823.3422 5507.9856 14391.4793 7180.907 2221.3655 5250.6669 5771.7469 3462.051 86724.43 6612.391 6401.4322 5578.0344 4694.883 4694.883 4334.9564 13200.7071 6700.6425 5155.7355 7688.5834 8306.3956 4087.5255 3694.9653 9973.8914 3452.4373 12789.478 6179.8497 8451.8717 3915.7343 5286.2708 5688.3421 4076.8614 9763.398 365891074 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14463.662 8859.578 8087.731 11292.9076 3404.962 4258.8028 3452.9029 4599.0427 9451.4838 3562.3962 148117.556 6508.5368 8321.0662 10239.6795 4805.0033 4805.0033 3996.4483 9242.9853 13298.3684 5865.7445 11654.6783 26532.131 4825.7676 6422.7304 8301.8685 4461.2637 11826.9363 5077.593 7500.6249 4775.1215 4491.3364 13496.0733 4017.8291 4996.0458 398199128 fosa Virulence Antibiotic resistance Degradation Pseudomonas sp. GM60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4894.9047 3413.9815 157339.6649 14045.0052 3919.01 3919.01 4761.2213 2426.8155 5132.8005 2745.4925 6916.4845 336393577 ppx Phosphorus Polyphosphate degradation NA Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 4723.8858 3744.4169 77435.1709 3641.8176 3743.2337 6556.5956 4430.7419 2310.6936 6418.2161 7994.5254 5766.8049 3496.3648 4320.5738 2224.8915 365178320 B_lactamase_A Virulence Antibiotic resistance Degradation Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 24328.222 7760.894 12605.0828 8592.6193 24567.467 12815.7098 15444.0028 8746.9027 11543.1025 20173.0912 230043.0592 16263.9967 27863.4868 27920.4657 6407.7919 6407.7919 9420.8808 23361.1163 15897.6217 27090.5747 18410.7906 224184.7543 30755.8395 10128.6521 18214.8371 105382.4228 34681.8846 19766.9335 19682.7443 16381.9293 9084.2479 13809.3626 19348.6571 18334.0285 329310610 ppx Phosphorus Polyphosphate degradation NA Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 612869.022 49481.1269 160369.9055 117912.6049 109801.5857 213567.1971 76575.5023 33222.1573 39182.6616 82097.4632 176018.3517 92081.6535 1358879.6626 85002.2836 123065.479 957766.7938 109059.9725 109059.9725 53448.3497 117611.3916 54190.9258 80090.7671 118618.6311 154423.7154 62515.0602 73497.6079 109777.2219 116780.2345 269991.3878 132276.8866 163109.2121 44625.7417 70771.8116 110543.6451 68470.5105 88853.9834 114763950 urec Nitrogen Ammonification NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 16790.2425 67959.2154 9218.4871 17604.8902 22475.848 13912.8858 24168.3501 9345.9389 7733.9463 14255.024 14733.8281 16035.317 602782.1072 33574.6621 27980.4416 16036.0307 29423.0287 29423.0287 8636.5235 17485.2015 11739.1767 9669.195 23486.9602 21202.6935 11397.2812 17606.728 34256.8739 9950.3084 32016.6331 15296.4557 19413.3086 7561.2119 13049.9448 16444.6248 7114.5211 21880.1743 409407481 pcpe Organic Remediation Herbicides related compound NA Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 48081.9649 21359.3275 51395.778 22447.7782 889587.684 13650.8104 72148.8102 37484.2927 107198.8429 36919.8874 100510.2425 58995.4692 866091.6274 42509.8786 88745.7158 42535.6389 86391.951 86391.951 35067.8882 59457.3577 35695.3975 35887.2659 59155.5153 34386.3219 34920.685 33397.2921 883727.2951 46206.6917 132753.1708 35992.0121 129616.1373 24733.8253 41471.2303 42217.1528 30198.2029 41595.6041 220714663 catb Organic Remediation Aromatics BTEX and related aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 24518.6645 15491.6018 6443.5209 35670.4995 5541.0098 16672.3988 18202.4688 3389.8292 12161.6923 25977.9913 19070.5493 265726.197 10463.0981 157016.4149 9446.318 50487.3497 50487.3497 8287.1726 21066.7016 9067.2731 13424.8437 20931.4227 34720.6401 49868.2002 11628.3006 13648.0309 8494.9113 79849.3081 22586.7072 16772.7233 9127.6504 12117.6019 8627.905 6344.0484 16053.6418 334897837 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 7893.7625 3110.6174 2881.1803 7084.5155 4521.6323 5255.6096 4403.5649 10440.3199 11045.241 9861.1942 5856.9265 296283622 cysJ Sulfur Reduction NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 14507.331 24157.7885 22862.804 29210.2307 15915.1859 8792.9856 5906.004 14745.8298 13756.2362 6070.2564 269950.7228 16378.8561 14426.9563 8778.1414 8415.0566 8415.0566 9855.2149 20191.9928 14536.1338 15195.0546 15178.021 26228.0925 10164.0253 6499.4943 13224.9733 9608.2694 239905.4853 17331.3974 19404.7111 6874.1406 9484.4726 11624.7927 7262.1312 19835.3796 359277440 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. PCC-P superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 43104.3106 47197.4374 54962.4725 112768.0568 16687.3403 63337.9508 46658.4444 28941.5814 41670.9326 172730.1934 29111.3573 1263816.0143 49953.5031 64725.9722 79203.5475 39347.3924 39347.3924 36400.6786 88608.2718 73289.1663 65795.7226 80052.4489 72379.8945 24958.2903 34426.7704 71731.8527 25028.2752 111047.5513 56022.6273 72577.8184 32116.4014 32557.5987 48717.8634 24506.9203 58737.3798 317506881 merb Metal Homeostasis Mercury Detoxification Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 6726.5334 7923.3776 10215.2942 5464.5421 3705.253 8577.076 4131.124 5041.2722 6510.2068 4571.9796 82791.4328 5719.317 4376.6841 6456.5052 5092.8248 5092.8248 4749.0566 18090.5438 11729.678 6851.3481 7069.7411 10355.4987 3783.9194 4186.0815 14689.2819 6523.4443 21940.8177 10441.8783 10098.7845 5925.862 6072.0227 5821.2799 5228.122 12573.7191 319949839 ppx Phosphorus Polyphosphate degradation NA Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 161263.9861 42905.3103 12055.1036 28044.0967 65986.8652 56292.5732 43957.1151 23460.8712 11398.5808 53481.9434 35671.508 27770.4209 395735.6144 29422.6855 27029.3262 28197.4859 27892.7049 27892.7049 20427.2758 36834.547 21152.2422 13108.3525 25556.2993 29019.4923 9391.8746 16003.9552 36496.0879 12912.1076 39585.7567 35424.5675 39613.4139 16805.8498 18125.136 20123.7908 10632.5636 28118.4539 27529179 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 21032.034 7464.1965 17063.1756 4376.0567 4489.3762 4718.425 8485.2293 3323.6314 79549.2094 6663.8146 9089.3848 6822.8095 3549.8621 3549.8621 5724.2328 21723.1387 19830.4254 7171.7292 12134.2076 8600.8689 8170.108 52053.1862 10039.9386 16115.0558 57876.8592 19109.1286 16086.9696 3102.4913 8600.45 22100.4758 4184.7768 69619.9751 167346695 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 4998.1483 2979.9567 4332.8125 12649.3321 6196.0408 975797.2284 19681.4245 13070.5567 4330.0011 4330.0011 2926.0033 8471.2696 5605.9524 4256.4797 9298.6236 14862.7963 3102.549 4623.3225 12924.1514 4254.0415 12338.2182 11230.6188 3635.0616 5612.6031 4696.7223 3093.7991 169831014 amyA Carbon Cycling Carbon degradation Starch Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 5093.0749 27337.3755 3662.2471 4240.213 2086.707 13019.3557 6542.2352 5904.3665 142484.9753 7515.364 9536.0413 4435.2154 3409.3079 3409.3079 3136.604 8902.7641 6485.4575 14416.3646 4384.5973 6301.8076 2204.7979 4896.4812 6500.5898 3252.3607 11593.3766 5357.6692 8315.523 2855.3381 4515.344 5225.9798 2785.3632 7904.915 209486033 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 64479.1253 8264.8545 8435.3241 27012.0963 12334.4452 15782.2336 37789.9012 129411.8432 24581.1875 33365.9187 224138.0016 468855.7094 46808.3314 82372.359 43865.6687 63752.2026 63752.2026 72847.0436 98460.668 212833.0959 17671.1572 56430.5132 15984.5335 19272.6046 37983.696 32471.8658 25631.5483 81298.0163 34825.4927 28282.6911 36285.0357 18330.2262 47049.5528 24364.4888 53444.5125 237785400 urec Nitrogen Ammonification NA Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 20057.1668 19032.2826 16088.9456 197082.0007 24227.3509 17770.7765 20169.8021 27687.4433 14759.5006 23747.33 16076.5036 519107.0163 65795.5169 50648.676 52310.6681 57790.7689 57790.7689 13159.8849 38191.8121 20774.9455 19331.5173 72290.8029 24068.2198 14162.3306 14458.2962 25090.7146 16050.5447 42243.2269 88161.021 37064.4988 8790.8456 25382.7027 30836.0481 16926.8762 38140.013 357078330 pcag Organic Remediation Aromatics Other aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 268510.0994 28132.6992 18325.141 34065.5418 37491.894 48373.8983 46159.7868 22432.8106 53023.7995 27733.5008 310641.7187 32253.57 39062.5058 41081.5975 34483.5114 34483.5114 22703.4739 43884.7083 23125.6778 101382.2402 54270.6879 30449.8228 27118.7187 42596.6467 28437.3615 26796.4279 72226.692 40820.1076 46537.1876 18426.5566 38192.4648 139119.9914 36235.9456 37658.1621 56798867 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4582.1337 5102.368 12383.7265 3901.5332 3772.0475 4716.1964 64831.725 4658.4226 4562.6536 6535.2178 4076.634 4076.634 9039.797 11374.6516 18799.3835 2899.9636 9966.3313 3105.9151 13051.0723 7612.6308 9439.3649 4175.8855 4018.4486 5835.2658 5527.4943 146192228 SoxA Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 200106.3076 55180.5827 152146.1307 332436.8898 160242.7737 110655.1897 320606.1525 284170.2521 122413.122 147993.6975 173641.3164 201705.6871 3502097.3224 657146.6804 230213.4587 555911.9531 260318.2587 260318.2587 201194.3078 264245.4161 136511.5441 1095396.7244 582303.7509 404323.1691 179080.2659 140934.7628 220460.2576 191278.5759 558867.3904 202198.5997 257248.843 77183.3277 182454.0082 153573.2269 160030.8436 1333841.7401 307689485 pula Carbon Cycling Carbon degradation Starch Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 6117.78 5761.0133 5775.2082 7040.9229 5736.5901 2543.8378 3791.8982 5117.5232 2452.0817 82163.4859 5818.6328 4395.4463 3266.8432 7952.7191 5151.5127 4803.5088 5927.9519 87107.3317 3193.7462 3177.8239 11644.076 3776.1967 12323.0921 5495.8998 7266.2998 3559.8936 3961.9878 4519.3342 3605.2989 12161.6206 356676281 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4031.4105 3835.6078 441972.1721 5257.0036 3632.0066 4102.9904 4899.1903 80639.9071 4777.3839 5176.0977 3121.4034 3121.4034 3189.4666 8223.8918 8565.2976 4212.6474 5885.3498 2385.419 3666.8626 7705.9254 2885.041 11177.5395 5736.3824 8601.2305 3577.0606 4085.4001 2936.943 6783.533 158450395 endoglucanase Carbon Cycling Carbon degradation Cellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 8299.8979 13086.7974 20766.338 5266.0689 6381.551 9754.3481 12764.4936 7223.404 212450.3456 12168.505 9262.8433 18226.9899 4206.3338 4206.3338 5952.2567 16161.0991 12159.0978 11715.7778 11588.4602 9866.1106 7003.2324 7247.3803 10716.4046 5491.5277 58955.5862 11035.8003 11434.379 9018.8159 6937.1325 6855.5848 5968.9525 15665.2395 118667595 arsc Metal Homeostasis Arsenic Detoxification Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 8678.248 5352.0032 6494.527 3556.1322 76217.3814 5820.1226 17209.0187 17209.0187 2911.6914 6811.8563 8682.4923 4813.7177 5089.226 3174.9013 6865.3792 4390.1821 19069.1753 16366.0039 5427.0529 2952.8164 4167.7798 5024.7418 2950.6458 28924.0207 126719436 pgk Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6281.7922 10140.7786 4262.6396 6124.5878 107200.0039 4818.8216 4112.6519 7132.1979 3202.6067 115772.5007 8955.9426 10237.058 25998.3301 25998.3301 12494.9395 54441.1891 8188.066 8680.5681 34184.1964 10962.7518 192271.4531 4019.3492 7980.3451 23669.8914 15270.8683 10876.407 15948.6005 4048.9454 5521.384 4262.1178 4186.4032 8545.9808 7592856 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiobacillus sp. 'Lamellibrachia symbiont-2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 27338.4828 28594.3685 28312.7666 21001.764 18622.2432 7779.3634 9274.227 12934.2068 5242.0835 29772.1039 23613.3317 13753.5901 243251.0042 22341.4894 27687.2314 38581.3838 32281.9298 32281.9298 17743.4225 35912.7272 19895.7542 15520.5635 20437.5197 22466.0759 9080.4679 16162.8226 22076.4441 9924.6487 48230.4117 22189.1611 29752.9873 14975.5402 20301.2257 19211.5003 12303.524 28874.857 3157662 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 26192.9457 545725.6881 1598776.5329 265149.946 13261.0785 42436.6477 48433.1623 29188.7277 23468.1868 41060.1741 22533.3154 1006769.4989 27258.489 33293.2681 58231.3307 22792.1151 22792.1151 25394.1872 65406.1506 25332.1288 39562.6646 46924.6368 123345.1365 27366.3605 24975.4673 35197.9933 13861.6972 52678.8085 52883.634 29233.9916 16144.5833 38087.3243 33455.8609 17285.0427 31942.3206 344690006 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4701.3252 11102.2502 4568.4206 2338.6871 2520.9282 3007.7362 4094.8939 321172.9928 2462.6954 2462.6954 2912.1858 7342.7443 6343.3147 5551.4288 7050.922 3791.7321 2886.791 13817.2962 4199.0275 9734.5155 23395.755 4692.4098 3689.8622 2481.8366 20972.4557 164455332 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5757.2602 3429.0334 2656.0338 6961.1935 7571.3917 5692.253 6871.0966 81427.0236 7141.1181 3421.4294 3421.4294 3804.5927 9154.1915 4573.0583 6432.5015 9513.1611 4379.1271 4260.1865 5590.9407 2852.0744 42247.8951 4480.2361 10711.1721 3182.565 4741.7271 5943.6165 3675.4161 8173.2973 212542195 nagg Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 955361.7487 39687.0853 47454.7437 44974.6842 7731.9092 27243.6237 113717.5091 41108.3257 37635.4054 42974.6631 51884.1199 1450872.4068 263432.2485 47649.5045 50931.8339 43880.6511 43880.6511 32282.0315 58637.5156 34651.3351 35072.6012 105871.6831 89498.3586 29097.301 45282.9146 54327.9962 67111.3289 158679.6039 61594.9707 51198.7822 23727.7367 47490.6903 38788.4483 59968.6849 85568.3261 340350658 amyA Carbon Cycling Carbon degradation Starch Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 8766.6767 11349.0824 8210.6983 18434.5579 4306.6508 10122.3234 10412.4741 8157.359 115001.4833 7402.1923 5821.8869 6626.9866 10257.6094 10257.6094 5120.8103 13275.1016 8896.9005 7760.6708 11493.449 6416.2518 3839.1589 6042.6707 10510.3843 6969.3348 20232.3694 14003.3431 13019.1762 4939.8652 8427.2722 5753.913 5026.7265 8735.1403 325283086 phytase Phosphorus Phytic acid hydrolysis NA Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 5125.4512 6767.098 8036.4001 3444.0078 2513.0397 2040.2754 3117.8994 3641.4298 107192.5397 4310.5614 2838.7683 8690.3272 5177.844 4374.7994 3212.0136 2719.1919 8310.4921 3084.7337 12418.3818 5050.4467 6486.4355 4141.8408 3167.9739 3495.0012 2789.8604 6575.6011 333915906 vana Carbon Cycling Carbon degradation Vanillin/Lignin Delftia sp. Cs1-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 11301.7787 8136.5756 10269.4678 15018.0219 5644.6486 11000.3804 7064.9643 9576.9599 11040.4778 20513.0555 13457.5357 10321.1231 46984.8075 21299.0736 21299.0736 8553.3866 81031.0384 8193.1771 116394.5079 34884.0654 24294.657 6682.6 13219.5691 14996.837 31538.138 24508.4786 35332.4335 16650.8975 13667.7039 25051.5692 35740.4439 7471.1789 50294.0963 336448361 amyA Carbon Cycling Carbon degradation Starch Lactobacillus reuteri SD2112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8767.1843 15697.6057 3869.0483 4224.705 3593.9907 3593.9907 2712.3781 2479.5562 7542.9372 21620.157 50084780 oxdb Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 21137.4772 6464.8417 5198.5587 4309.5738 9853.6585 2845.2835 112177.3196 6857.2124 6495.8688 3433.7656 3433.7656 3497.8038 8642.9331 8191.7801 159204.2259 6115.9407 5677.6458 3510.465 3207.2786 7706.8289 3417.8328 12467.5881 14091.4073 7443.893 2707.6088 5784.0426 4782.1996 3953.8541 10724.2942 85669083 dehh109 Organic Remediation Chlorinated solvents NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 237097.5761 51961.7768 681914.4018 90994.6697 85775.4734 33363.1715 101648.1849 399774.1829 161392.4762 128749.0725 120866.6627 150573.5854 3650401.1617 153637.4448 177701.1396 176891.1655 203276.1775 203276.1775 129773.9601 214991.1167 79725.294 217716.1548 363738.3009 746176.953 118479.0852 124741.5957 155982.3807 111025.3164 409781.4629 124606.8409 171059.4631 95405.3736 149423.5729 143231.0346 137413.6471 246037.4731 90335930 mer Metal Homeostasis Mercury Detoxification Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 20451.3314 25154.3675 22373.3575 9211.7601 3472.7307 84168.8524 15405.9929 9348.9294 11101.3838 20232.5801 194676.3747 9709.1233 17887.9644 35872.5636 14866.4184 14866.4184 11508.2076 29293.4489 13679.09 12829.2833 11344.9846 83157.603 120397.2372 32041.5782 30080.9073 145419.8527 31746.1051 32444.1357 17869.0459 61946.6249 13277.2358 18412.2735 8895.4079 153643.1837 301108069 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 6618.8765 6421.8793 16178.163 2200.4931 9410.7893 5098.7477 9060.8137 3997.1569 88422.7372 4959.4978 10441.426 4321.5507 3622.7241 3622.7241 2935.4536 6886.7053 5801.6238 6071.3862 8068.1559 5365.7697 12979.7394 7396.3467 11311.0346 8759.589 15899.3575 10858.3305 9799.744 5553.3902 4770.5687 8302.038 15617.1191 5914.3986 256371793 ppx Phosphorus Polyphosphate degradation NA Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 42414.2089 12878.3276 8958.4486 12252.2291 20174.8325 6386.2398 25121.7457 18051.7507 69458.8552 13789.8797 19186.3393 226460.6085 12983.18 176752.7652 43043.3031 16254.881 16254.881 8530.3669 30155.906 12088.4581 21149.7364 22200.0898 31495.72 14049.8626 23105.5908 57998.1877 21193.3621 37233.2115 18931.6599 24873.1235 8025.5258 21078.9985 21354.1653 42570.2197 18182.6476 121702635 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5617.3042 31154.4204 10878.4038 4178.8202 7100.8483 5136.4529 3266181.2494 10714.2765 7406.219 2800.6095 2800.6095 4575.0864 16819.4609 6943.7102 7187.352 22340.3214 9080.6759 3541.0425 4735.2764 8548.1243 3444.4921 21037.1688 10192.0393 6482.7442 2888.8975 5207.2955 9874.3766 3969.8928 9851.9268 219550472 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 351646.1754 28203.888 768907.6446 545809.5059 140067.3724 194215.6883 242132.2948 722900.0039 368489.4152 313160.5978 472844.6747 138551.0013 4823807.4569 320607.546 653780.0396 397506.0452 564818.2217 564818.2217 154376.0207 665581.5569 262571.575 747331.3974 478908.4545 513437.3791 264366.0813 238399.2769 145102.4837 296100.7882 941596.9691 739256.5386 205723.322 390529.8606 205740.9134 267536.9889 110175.8411 1393040.6678 348027649 linb Organic Remediation Pesticides related compound NA Glaciecola nitratireducens FR1064 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 11705.4958 7391.9671 12352.7315 9343.9463 10257.0587 24657.0195 11946.3305 25331.814 7745.3916 258473.7829 19340.5054 8659.0011 6839.9545 11300.0989 11300.0989 7475.2394 18727.8068 15105.0666 13475.1839 22179.3941 17970.6789 8196.411 7192.8346 15697.4809 7706.8118 25151.7297 15475.5928 14115.6942 8390.3225 9571.5002 34295.7503 19229.9129 17681.2511 374986299 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 384769.7271 89927.425 223114.764 341326.2235 2935933.3666 156976.2212 352494.6617 545260.4293 278313.566 238351.6963 356650.3401 266736.4853 7050039.1883 425142.9823 365623.3967 442206.6316 448668.4096 448668.4096 290722.1667 342927.4064 171342.224 369167.4654 459728.1316 868150.7647 202239.7294 165859.5394 432320.8619 208741.9635 865731.339 409676.6964 481167.8346 258710.0505 250615.3814 293320.7822 164764.5558 396606.5694 351732678 dehh Organic Remediation Chlorinated solvents NA Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 35446.8075 40723.9019 2769.1978 2826.4411 53322.4491 9656.5825 7420.3192 2574.5182 2574.5182 6866.7081 5247.9203 3494.2769 4876.9365 4645.7261 2761.0633 15579.1984 6340.9729 34401.4571 5824.4175 5823.4095 4772.2929 160970.5049 295835788 atza Organic Remediation Herbicides related compound NA Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13914.0915 811947.1866 45079.1857 55087.1839 12919.0648 6578.7018 6526.2516 2375.5153 40579.5957 13328.3123 8459.7751 247748.2379 14561.9496 19407.0856 40019.0281 13288.5738 13288.5738 23567.219 17570.9762 15615.0121 14633.1715 31941.2518 16068.5489 14229.5533 9581.0832 19962.6495 8344.3428 24840.3097 17635.5904 20010.1671 6133.0582 12417.4307 26746.4662 12748.8215 15931.6701 90954635 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 78063.1219 48393.1857 60747.7134 100182.6644 89045.5522 48569.0117 81708.1188 59890.7316 55253.5918 65856.5823 84983.7278 39837.675 2902515.5709 88665.1071 79556.5016 113241.444 62138.0033 62138.0033 54738.4284 96634.2976 61257.0905 75737.1287 98203.7899 151502.4923 39979.374 39903.2513 82675.9733 42955.0265 152578.7553 61841.4418 81255.8966 37593.8395 63755.1918 90281.3377 35949.5711 108254.121 326947328 suc_CoA_red_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 26031.8329 15071.1607 21904.6553 20872.171 30975.7292 21860.7247 33342.6161 26751.112 22126.9713 12383.9406 389238.7158 21936.4873 16885.5585 20786.7676 21013.4274 21013.4274 13909.5984 37302.8914 18438.6896 66202.5723 231587.8143 41761.6309 15617.7475 14569.9761 25069.6679 19272.1227 46438.546 47380.5675 24294.0131 11486.1254 16877.5609 21508.1936 12216.5624 29697.6502 88643212 dsrB Sulfur sulfite reduction NA Desulfohalobiaceae bacterium Benz superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae; 20388.0569 8595.1967 13875.564 90227.4624 12412.7156 16922.2018 8273.6649 13173.6814 21544.2183 7800.5837 379346.2995 15027.1455 24730.0441 22892.1163 6308.6307 6308.6307 11374.7675 22414.5247 17474.9572 393424.0407 39652.1223 29982.1474 13436.9464 8807.2696 36361.605 14055.5709 29338.4039 22845.8241 21772.1216 8263.2679 10869.3496 14623.3639 8775.1399 29225.9506 60476230 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3989.0463 23237.3018 4160.612 5709.5296 3827.2498 3936.2459 4135.161 7488.1572 7488.1572 3820.8816 9295.4631 10114.0086 8566.5323 5549.2539 10948.5847 5824.1419 10147.2552 6181.0378 17877.6264 65368.9879 8084.6633 5216.7812 1951.0343 5873.3707 10340.2162 3784.4943 5146.7926 190572256 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 7631.0853 8198.8358 2264.8167 8162.9224 11565.8843 4522.8418 15334.6084 9464.3931 98775.7232 31520.7107 3949.8548 6557.7464 2715.8613 2715.8613 4062.898 11169.4187 5788.5448 68636.5419 7058.6144 5925.9184 15134.7944 8372.3803 7492.8214 35203.8779 20802.5172 5804.6902 9651.9964 4009.8246 7288.0267 7201.4215 16140.153 7981.5956 381211325 chrr Metal Homeostasis Chromium Detoxification Lentibacillus sp. Grbi superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lentibacillus; 3806.5208 5198.3486 359462888 amyA Carbon Cycling Carbon degradation Starch Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 4983.2173 1966.4271 1966.4271 2729.9955 4703.8013 2093.9304 4888.6153 85670215 pgk Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 26168.5232 123022.7829 27745.3848 14792.8358 8643.3821 22476.6344 63401.4126 27681.7552 50982.4473 20421.7063 30544.2833 309793.7263 38240.3216 43159.1502 45626.6821 22541.9419 22541.9419 12957.294 48344.023 30737.363 8183.7176 53906.1219 20151.7383 26145.7721 24889.9132 29713.1626 17424.2754 65110.6216 108802.3292 106610.3261 35552.864 33457.2099 17211.244 15433.1389 22852.2731 312878852 arsc Metal Homeostasis Arsenic Detoxification Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 340203.5244 4953.9304 17201.3424 19534.9665 14907.4886 5494.4257 2253.7279 55488.3214 5065.7073 3149.151 3149.151 3220.0606 10387.3037 5307.268 4407.084 9444.2779 5056.8719 2477.0147 3413.2085 8150.7256 2565.8465 11465.0514 5580.0418 6561.512 4504.4629 3656.5686 2591.3183 5296.4097 398127579 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6296.1799 2747.0869 15354.6439 5510.7831 4472.6813 10937.7197 3935.8655 5772.9815 5772.9815 2920.5069 3643.9252 4767.6405 2528.7072 6694.4321 12876.1375 5200.456 5424.7298 2218.7374 3067.7737 3276.049 32336.0005 308750297 fosa Virulence Antibiotic resistance Degradation Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 5671.5306 25570.6776 8983.1218 10830.838 2003.1722 6698.4708 7664.9345 4309.658 3604.3661 6442.1944 10328.6084 10328.6084 2809.3361 18999.8694 7649.4266 4836.9521 14748.9044 4754.2514 5210.6698 4941.3626 9882.1749 3254.833 33013.6868 6841.1363 8651.094 3571.6935 9049.4181 28461.8337 8032.5561 31981.4835 167835776 cysI Sulfur Other NA Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 19047.0024 18589.6904 3536.8025 5672.9553 6392.8551 26134.4453 6373.4498 186706.0554 14494.8771 5859.8358 19628.8109 3611.2242 3611.2242 25266.5738 22812.0896 13256.4389 6633.0472 38803.2213 7898.5439 4944.7828 8468.2342 11690.8803 9875.1097 21944.054 4270.4469 13562.1935 4114.1861 5276.9234 8889.2886 7964.8046 16142.605 53803990 ppk Phosphorus Polyphosphate synthesis NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 13822.813 13430.6546 17664.1843 16211.1108 5354.6945 10359.9567 10791.5896 5486.6176 12255.3916 15751.3902 5044.0048 309998.7157 19173.7548 11196.105 11066.2673 6733.4465 6733.4465 12344.6445 36879.9831 19470.9333 13900.7992 20219.3999 18701.1286 10722.0945 11016.7803 26227.6027 7841.3589 37026.9211 5841.2491 28484.6327 8147.6102 18197.1966 15538.1364 8398.2712 20489.334 336319885 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 15498.4315 12233.7447 5269.681 9569.6774 4967.9725 16404.2793 20109.5632 12043.5529 16927.7992 22169.8382 39207.6306 134009.3146 31127.3855 15159.7476 15697.831 17740.7953 17740.7953 75536.7095 66414.6338 18889.4763 20712.8959 43397.6168 15023.9649 13323.3486 23226.4587 12924.2437 15528.0312 58338.8766 18559.3051 21381.3573 9152.0997 23832.8032 30535.2063 34338.5566 25753.5749 290745682 nirk Nitrogen Denitrification NA Intrasporangium sp. 4LS1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium; 10198.7504 3570.2983 2665.9921 68469.1831 2131.7609 2131.7609 11867.2694 4477.7035 33415260 APS_AprB Sulfur adenylylsulfate reductase NA Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 6340.5469 10650.1475 5419.503 56746.6348 8657.7835 98922.0316 12397.257 2119.4763 2119.4763 2854.0083 6986.1707 4487.7075 7863.3367 2846.5793 7631.9657 11408.735 4420.6212 7294.6907 4726.1847 3584.3662 4819.9936 15146.8094 349792249 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 4708.6178 5165.5528 4238.1038 26809.3725 2894.4699 3296.9471 4458.8113 97956.7672 5256.4423 116970.4884 18451.0011 5651.968 12571.5889 6532.0336 6532.0336 11031.165 4068.0502 6762.2623 12820.2821 6604.067 2519.7494 6247.8944 12821.2609 3482.3453 15369.5786 8105.3741 6993.4258 19059.2842 4453.9531 5807.1361 3073.6082 346918938 PRK Carbon Cycling Carbon fixation Calvin cycle Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 23802.7389 12446.1301 5061.165 11327.678 7432.9121 8651.6711 18943.3979 26008.8569 19266.0357 17702.5467 52703.0713 162235.6636 21164.1692 14719.2249 19847.1382 37073.7257 37073.7257 10826.1141 32324.6492 34406.5553 89552.9878 35632.2338 17557.5018 12624.468 102947.6453 17738.8507 18154.6807 52992.0622 27093.4919 26831.0237 11697.9787 22259.9541 18070.9474 15242.8927 15584.5149 156231504 MMCE Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 11627.1046 12853.9361 11984.5507 179336.4157 5144.2558 10334.2668 8703.7842 8963.1523 16716.4643 12945.1983 313573.2971 13322.0575 23629.524 10389.5005 7708.7715 7708.7715 6231.7897 17641.311 12832.0876 23644.1949 19901.3247 6732.1389 4388.9011 8081.3785 10558.4843 15744.6391 19558.1166 5676.3341 14863.4643 5143.3434 14497.2977 8403.4856 10457.5464 22299.2753 58425534 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas oryzae pv. oryzae KACC10331 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 18854.4944 5280.0001 7602.347 9695.9592 9492.0059 10732.9062 9640.8846 12779.2717 4205.1691 236121.8292 10860.4724 8502.3277 6129.6863 4020.3473 4020.3473 6998.9821 14505.3995 8526.1807 11993.3105 9341.9759 14883.8402 7655.4925 4869.3304 12537.5251 5201.7322 20071.75 4025.3479 13648.6082 6084.0263 7598.4247 7116.2214 5664.8825 16247.756 326206617 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 9010.4665 6081.3919 3692.6961 3368.8584 7778.1237 4939.6892 4549.511 3141.9536 3141.9536 6029.9548 4443.7908 4388.3268 3638.1949 9844.9913 4488.8827 3395.7591 91777385 tpha Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8612.7775 31694.179 3852.5229 7891.6458 6123.8257 20248.0185 24584.3985 5776.3102 5040.3152 8234.7088 8234.7088 4179.915 10899.9274 248835.1242 8534.1197 4315.4076 2573.7372 10324.228 2577.0066 13367.0815 7258.8129 5650.4366 2804.3224 6997.6412 26455.3384 6316.7501 7394.266 161339349 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6601.953 2413.0546 12080.9289 2409.032 5217.3975 6209.9623 13994.4193 170323.1919 5625.3918 9105.3114 5549.312 23048.0333 23048.0333 6620.3056 3404.0766 3876.5499 13240.5527 2576.7119 3253.0492 5314.1968 10860.4609 4289.4704 8359.8089 2291.5034 4657.6215 19996.2259 4090.8898 344998109 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 46911.4733 6992.6453 326064.0141 5908.2104 19730.7839 13950.2719 9997.5805 16272.3854 10485.0274 331335.9218 14237.0647 4375.2094 13398.1947 13398.1947 13282.9689 19617.8405 29180.1343 11334.4699 13426.2276 8201.1235 22008.8339 9317.1508 19406.5448 12710.3673 30141.8302 22410.6871 14117.6978 28611.2348 23052.8376 18475.4792 11193.5162 34812.7798 333984780 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 23011.8598 2469.4363 3486.9843 10361.6358 2407.4271 64322.0957 17061.6249 3058.5564 3058.5564 9742.91 3888.014 6903.4042 4023.6441 2199.6118 2501.9147 5674.0495 16293.406 8742.951 3776.3702 6245.1573 3506.8992 16789.9968 3056.813 5442.4529 37791351 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 82992.8215 115915.2086 111311.1637 27909.0219 36594.9675 2101370.0898 242654.8005 366355.4195 86923.6159 52264.6862 116419.072 53978.4102 2739643.4337 105469.6236 66129.7128 1867010.0074 57516.28 57516.28 89720.9151 98386.5746 51133.0555 143611.3848 231767.1225 41818.727 28016.7089 48708.9518 178227.1553 181683.4544 158584.3572 97848.9369 51741.7179 71568.4228 115790.7334 69742.5002 76727.9977 98310.8734 304392415 mer Metal Homeostasis Mercury Detoxification Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 3993.8288 7254.2799 9910.197 3975.5002 4329.4465 4167.5718 5146.6431 3793.4553 91249.6455 7081.3991 5349.624 3840.9451 3198.8007 3198.8007 5894.6112 7247.0704 5436.7491 3829.4821 4130.7786 9446.012 2270.2261 3466.31 11488.6392 10675.8829 11455.6542 4901.6038 7564.0286 3610.6898 4352.8921 3902.3898 2488.3287 4985.7189 4633573 nosz Nitrogen Denitrification NA uncultured bacterium ProV superkingdom:Bacteria; 183687.0819 118422.288 120713.3087 205430.088 123602.1005 67917.5233 249352.8058 190059.9988 261614.0733 137562.7366 160099.1711 105310.9321 2661712.8193 170556.149 268072.8774 181967.2355 125274.6547 125274.6547 102364.1328 203928.1082 110439.3925 271979.3568 323759.2155 311200.2936 106633.9605 95168.109 133447.2984 86771.7568 272297.7354 156979.2632 164716.888 133564.6481 122832.8953 135890.7359 85414.6097 332688.2053 374608695 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 14499.7074 7438.0659 14002.5734 15505.6823 5726.7344 10183.9876 11776.892 29883.9218 18945.8122 22908.5748 18731.6056 248801.1053 19493.8248 17913.8153 28264.2867 6817.8547 6817.8547 11514.2347 16271.2423 12586.0073 10556.9773 19659.3942 454776.5196 9435.8395 5748.7825 20848.971 11834.085 32999.8628 13674.7941 22146.5138 6881.8563 11976.607 7070.2814 8426.6784 20761.6624 379988921 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5642.1206 16011.0704 36516.4246 22193.7091 23354.7291 22034.4339 51812.2072 5058.0326 15052.2532 92593.6028 23923.8868 152554.9779 11910.2586 39765.4398 17791.2401 68007.6382 68007.6382 24436.5964 54557.0009 17951.9349 15998.4414 11968.145 23036.2563 18277.4911 9720.8519 53021.1061 25505.9388 88552.2523 25732.8464 14931.201 22336.4283 27699.6692 27146.6399 15049.9948 171973.1845 326954474 xamo Organic Remediation Other Hydrocarbons NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 172504.9176 14282.3651 452071.6962 31615.0508 145200.6539 8624.5714 38798.9621 116238.8214 54230.4045 296830.8432 90957.1095 72041.5766 9242608.5746 161734.2663 139413.0909 69522.1591 138329.2446 138329.2446 306800.457 118893.8662 50843.8732 251876.7974 426163.317 124300.1275 100228.7448 69397.0735 114853.469 126264.697 137524.8942 119498.1908 100340.2704 111937.2042 89283.023 84486.2521 91691.9989 125971.9978 311070933 amyA Carbon Cycling Carbon degradation Starch Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 55636.877 181570.1542 15083.9317 27465.2987 21221.0819 25970.8526 33308.7835 36528.182 18455.5375 17024.6729 25585.6723 357022.1291 38104.0062 35998.2006 33656.7959 25001.9835 25001.9835 13267.1428 30669.6063 15761.3095 25792.7377 26366.2044 62017.7031 12104.3488 24647.5303 53928.5868 33574.1374 87053.8851 45090.4128 36021.122 10454.115 40072.791 29298.3269 12111.7634 14176.5763 85722740 terc Metal Homeostasis Tellurium Detoxification Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 35886.1221 28519.0664 5295.3427 15305.3268 5054.6496 3343.488 12118.9692 21615.3276 13148.7775 190509.7847 11100.9122 34017.7153 36394.1587 8353.0577 8353.0577 9339.7829 20092.8437 6624.3275 6687.9831 9059.0092 27699.2292 4846.089 28812.9894 13254.8685 18965.169 18047.2609 6804.541 18201.7914 33212.3105 10478.8862 17352.2582 7902.5978 13702.7875 254483656 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4022.3034 5187.3095 2382.955 3000.8568 4264.6407 105432.1692 15830.8883 6880.6504 2125.2344 3235.0104 4296.0554 5209.1605 1639.3415 2804.6046 5541.5482 325665048 arylest Organic Remediation Aromatics Other aromatics Yersinia enterocolitica subsp. palearctica 105.5R(r) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 10279.9552 5778.9182 126388874 terc Metal Homeostasis Tellurium Detoxification Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 19526.8595 15697.1692 11322.3205 14899.669 4405.8451 147395.8003 70583.1207 10893.7183 17047.5901 24243.9387 16562.1414 386365.2265 19919.2555 61716.1764 16815.8364 8485.7389 8485.7389 9065.4281 41488.5248 15367.4213 61239.137 19428.4965 55198.9097 9735.604 14180.0372 21444.3259 11870.0823 46096.3377 22315.3129 27066.244 14452.878 14019.3073 14810.6256 12115.1613 27773.3505 271502298 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 30980.6949 20916.7452 15579.4088 26011.0596 17625.1936 12862.6259 9905.5924 17034.0741 8971.8204 183974.5401 80580.2805 63371.9137 391328.1066 25046.5913 22084.6819 55082.5086 43878.488 43878.488 13639.3161 35388.5921 25150.9748 69454.5367 20269.5594 36951.9995 18818.3672 45720.7739 24718.5255 37644.9162 47798.385 25154.987 27427.9268 14344.9758 24891.7095 27951.871 114250.4232 44026.556 110350788 nirk Nitrogen Denitrification NA Nisaea denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Nisaea; 59816.8424 9510.0831 3379.3928 7947.4421 4820.9081 87888.3635 4591.6339 4591.6339 12627.8172 8110.8628 3964.0193 6740.6515 13396.002 9576.052 19827.9025 3296.3211 357025168 b_lactamase Virulence Antibiotic resistance Degradation Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 4968.1994 4267.2407 9219.8152 4720.8057 2476.6843 83980.8762 15806.4898 15806.4898 5495.3093 4407.3071 3659.9855 6094.9721 2124.7336 3356.7477 3143.8909 2414.7462 7189.0797 119535742 catechol Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 26684.9051 21809.7696 11201.2907 13503.7237 5130.2342 11060.3107 21393.7281 11675.6356 17003.2247 9649.7982 25499.4595 353360.1473 21446.5349 25393.174 39558.3719 21176.1538 21176.1538 33424.4326 32489.0195 25676.6975 29090.6868 42670.5113 24064.2699 19826.0371 32964.0978 20062.0158 15017.7861 50634.4807 18733.3691 27304.0039 10639.4058 18275.0123 30790.9534 16667.4961 23715.7738 310790899 amyA Carbon Cycling Carbon degradation Starch Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 3799.261 17108.6419 3502.915 3000.1479 6440.5602 65448.2993 4592.5118 5516.5228 4986.1841 3214.3019 3214.3019 6758.7127 5285.8118 13016.0415 8334.71 6140.6926 6184.7113 3106.1903 3059.9458 2972.6518 87239944 bphd Organic Remediation Aromatics Polycyclic aromatics Nocardioides aromaticivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 39239.8597 15779.0749 28200.8882 24584.8954 20282.0376 27979.0638 18703.4417 24166.1362 32467.5347 42696.6188 19644.4166 519947.6263 36322.5876 35780.5152 25789.6652 11849.0632 11849.0632 20694.4511 33600.4573 24034.6687 30955.784 42712.0985 35964.2522 14275.3072 13037.7737 30767.9145 15072.144 66942.114 30883.5923 31751.2153 13682.0743 20889.2633 25498.3641 15030.6491 51661.1086 226346956 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6675.3035 15710.265 12440.1536 9404.7675 3401.3513 7732.9159 17300.4165 13272.8398 258471.2072 13766.6317 8632.3429 5244.0441 5259.3548 5259.3548 11992.7737 15792.4256 15407.7183 21415.8997 32798.4169 11891.5164 4273.276 6080.5691 16628.3724 5964.9192 26729.2709 14569.6642 16504.8008 4659.9532 8354.0069 8059.8267 5842.3833 13838.6664 106769529 xyla Carbon Cycling Carbon degradation Hemicellulose Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 28159.0581 15327.9595 14078.9252 14927.8801 5456.0203 9769.7003 48195.2057 8870.5113 20322.5984 26788.9606 12423.6451 401829.0721 17681.6019 14685.4383 15488.7893 11062.5045 11062.5045 12781.8695 34409.5448 26925.4599 26328.5658 24658.5515 31552.4379 9001.4169 15990.0946 30913.822 16705.2407 44054.1255 39844.7309 21356.2653 7637.762 29146.6735 15766.4952 12097.1086 30245.7683 359777767 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 15423.2114 2695638.7218 712495.7557 11876.3924 23359.2574 17005.6323 4014.4716 4980.0537 13282.7054 5019.8271 481420.3254 10951.0394 8714.8666 6197.4885 6465.8429 6465.8429 4197.9723 10623.4782 108497.6546 45969.1972 7624.739 8342.0683 5756.5118 9844.9941 9409.392 12814.3031 31327.1115 8953.6277 10455.3824 5138.5618 11833.5574 12843.7661 9009.5973 157441.8636 217330167 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18942.6699 18234.0373 10406.2786 69701.3246 146324.8695 28942.3227 91854.2035 45330.2985 562211.6869 24061.289 18331.165 25210.4266 31056.1872 31056.1872 11640.8593 39000.9742 25025.0701 17315.8553 76172.2513 12959.8092 9272.8966 60003.0219 39288.358 35051.2982 54793.6966 36083.8606 68000.677 22282.0163 28319.4699 31114.8563 18177.4633 47435.7318 338823703 b_lactamase Virulence Antibiotic resistance Degradation Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 10836.7479 197930.5609 8915.2139 10338.5668 4040.586 4588.4211 4898.0915 21413.1982 6259.9495 101626.0889 9462.976 63696.6527 8484.3688 5532.2735 5532.2735 4041.4764 15855.5119 8960.9441 28499.8069 7177.4274 11824.0686 4617.1938 15741.1084 17143.5599 5381.1912 20580.5014 10873.3453 6910.6074 6290.6732 3990.4721 33834.286 7894.5225 11360.9758 333456270 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 7116.7244 7945.4098 9890.5443 4899.4093 7351.4424 2281.1641 6526.1916 14148.4941 8738.277 87496.7336 5393.0964 4667.0716 9407.1737 9407.1737 4148.6367 11339.2087 8197.0964 21274.7669 2741.039 4235.8486 5766.6996 6227.5277 45384.5342 9523.6564 8019.7762 3092.0147 4996.0842 10577.8245 3193.4199 13803.2716 332748619 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 66639.144 33228.7304 8517.8558 52056.4073 23027.0119 29495.1815 25963.6547 7606.2718 19510.9313 23636.8623 18462.5841 440932.0029 19087.2539 38500.5907 40716.4978 21758.2221 21758.2221 15455.2218 42272.2135 32357.4516 43585.1307 20821.8542 46684.6929 11013.974 24690.723 46086.1211 57735.03 42692.3967 46703.0095 148322.472 12199.0958 25556.555 111858.366 12044.3145 24035.3697 120593852 FBPase Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 363197.0242 43197.6698 193969.956 168671.4576 199560.5174 105494.8005 102742.4806 377015.5598 183142.5452 224088.0228 139645.1148 242662.23 3368268.2713 256397.9142 413038.1346 734347.4331 206591.0223 206591.0223 124008.2456 212521.539 155356.6198 343484.8199 246937.7337 184306.7371 81585.6242 103493.782 163371.4371 206449.6813 439290.0058 143539.6279 186429.4857 158930.3733 102509.4518 157003.9384 102681.394 164237.3519 338974097 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 6294.1786 10019.8747 7393.702 2757.8407 3133.0918 4685.7175 4449.4393 67164.4621 7743.5192 5954.7642 5954.7642 11673.5311 11621.689 14995.9796 2208.2024 4264.0501 17555.5063 3283.4733 9150.9195 25190.3985 5833.4678 3274.9715 5662.9948 2335.0831 90020589 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 4400.7108 3957.0629 6358.8469 4172.3549 51983.8883 4178.8284 3304.0178 3304.0178 2642.4434 7380.1353 17883.8756 2701.8539 12321.0557 6803.5003 10423.408 3431.7573 3523.8266 3863.2949 157146418 dmsa Organic Remediation Others NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 4902.3645 3284.9795 4936.4095 4087.2327 5747.2012 6013.1798 4993.1919 3671.9691 6617.7973 3621.3725 2358.9949 9204.8932 5213.2848 3463.1821 17280.2242 8797.5204 15264.8969 1898.0712 2539.8136 6086.047 89360675 phn Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7265.6913 30471.1638 13451.1206 4807.5209 3117.4531 10120.9008 8028.9327 7842.5174 4130.9404 72752.4251 49728.0305 7327.1585 7946.267 5084.9933 5084.9933 6619.6972 14383.328 10041.8595 22663.2948 9524.867 5005.7164 4097.0625 4805.7474 19763.7992 4082.0895 19904.9155 10760.6281 14527.5244 5382.0723 7076.4641 8156.754 3720.0107 11889.1972 294341267 metc Metal Homeostasis Mercury Detoxification Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 4932.257 381357095 ben_bcla virulence NA NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6207.7425 14407.7217 3939.4252 5632.3147 19089.4212 12838.9905 4768.3229 2502.803 94471171 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 53201.9265 18027.6448 21510.1026 29315.0615 11238.9166 5299.3322 13436.5244 13720.8859 16416.8485 34187.8603 23072.6512 16272.1079 498368.3075 21546.0684 29152.1473 31093.7669 20436.5431 20436.5431 17826.2002 36772.1695 27533.7735 36153.1967 37252.485 24779.4508 11107.5187 15368.4036 26895.207 12948.3425 40253.3992 27333.9727 37842.316 10680.7669 15091.0503 15221.7845 12688.1501 32506.29 261371012 dsra Sulfur sulfite reduction NA Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 89168.2478 26873.4858 98871.7583 533424.6317 15117.5157 47640.391 101793.5314 23624.1407 52437.4968 51513.6758 61397.0528 780728.8045 100707.0683 32433.0537 49048.9188 32121.0715 32121.0715 71069.4813 45314.9452 29708.0606 71357.5281 34694.6357 27101.841 30500.07 30145.4394 50974.0164 45052.776 83178.0722 47591.7582 69678.4077 21225.0032 30339.5254 65213.7117 25363.3417 639441.3191 87281083 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 70859.3115 17144.8055 14325.1142 27512.0681 17070.4421 26773.8408 56636.6944 11437.2086 20562.5982 54604.2204 32266.1687 558131.1228 25553.3733 112711.7884 29915.7783 16815.9587 16815.9587 9506.6993 74201.0233 22989.7319 64599.0562 34992.1474 41052.6273 13340.9653 23068.2515 37398.4819 31485.6548 65648.6785 16194.571 38822.4209 31462.5384 31800.7402 38428.523 17028.5466 161393.9826 319895727 cellobiase Carbon Cycling Carbon degradation Cellulose mine drainage metagenome 323783.6662 140238.8133 11284.0847 21614.235 11221.5191 12953.6162 16151.0926 6946.7256 12174.2729 153684.1709 11109.079 155709.0762 7970.5171 14351.2097 9151.6484 13661.7741 13661.7741 8287.0879 13544.5451 12265.6556 26616.4752 8601.1188 8037.5062 112046.5986 12605.3662 15501.0767 8710.9136 20243.2783 33282.8464 112004.5505 18305.4715 18219.6977 14763.0186 7724.2675 15707.2425 328919037 terc Metal Homeostasis Tellurium Detoxification Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 66298.5006 9372.0391 11116.3194 3084.7951 18215.5192 6132.8738 10355.7881 11665.1294 6512.5551 151263.3251 9456.9663 5158.6734 8614.5762 7150.891 7150.891 4411.335 24388.444 6794.5186 14169.0749 135685.4011 11601.2488 24870.2993 10440.916 11750.4605 7069.3392 37859.4302 21093.8389 12709.3648 7215.8373 10017.1305 42465.7477 14121.0412 11500.5908 320334870 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 343248.4716 17132.89175 97384.0386 162406.03535 174535.70125 124257913 tutfdg Organic Remediation Aromatics BTEX and related aromatics sulfate-reducing bacterium TRM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae; 9253.9904 5187.8769 4576.8321 3389.1975 4288.4333 3869.3044 5575.6837 101119.0004 5403.4592 4301.8031 4832.6121 7835.1503 6648.7784 5445.7807 11140.305 12401.5973 3516.8306 3123.4481 7916.79 3464.4432 10214.2294 5118.8765 10134.2574 3883.5065 4271.1342 5747.8848 3919.5405 13300.5421 302438557 adpb Organic Remediation Pesticides related compound NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10888.2956 6031.0449 8450.5411 13515.8925 1595715.0894 10327.3719 6812.9252 3153.0735 8529.4461 9449.726 5310.9684 126221.0263 8648.1844 8957.5494 7555.0226 4189.1811 4189.1811 5023.1783 19472.1173 11958.3954 6897.9771 16768.5094 11046.7685 10875.4986 5540.6851 11907.3127 4974.9963 19192.6642 18331.6976 17242.5019 5379.8022 6470.9576 8666.9112 5040.2836 19905.4777 110824775 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 12124.7698 39580.4151 3191.8908 10960.4665 4573.7681 8565.6855 4664.7679 5605.3674 5800.2737 3812.567 223886535 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 24319.2293 26567.9868 8379.1298 7460.482 9872.9391 13658.6751 21843.9065 12387.0722 23304.0735 35298.4798 1068288.5307 16072.8428 65819.6467 22956.3487 11161.4663 11161.4663 11128.1551 27851.0285 20246.9357 8166.8829 23883.6119 12622.134 14715.8962 13805.5653 29293.6793 25301.7043 95798.5143 23243.7726 32768.6908 14592.1031 14010.8131 23950.66 11634.139 14548.3884 50119068 pme Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 3781.0389 6266.2405 20243.4608 7448.3834 3067.6735 4028.2432 3151.5065 9712.686 5896.6632 7899.1587 109196.8677 4774.7155 5009.9064 4235.9396 2928.6912 2928.6912 2796.4207 7063.3116 5409.6405 5086.8854 4467.0976 10651.5126 3550.1855 2194.3916 10034.663 2644.7766 12212.1759 9012.5017 2394.9383 4117.4591 3097.8238 2379.9125 7464.5674 161163742 xylanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 7121.1138 9664.2412 4427.6156 14172.2758 6539.1584 50293.5785 3015.1571 5251.3414 6160.9898 3536.3853 99207.264 4773.3807 7809.6475 9205.8822 4410.9268 4410.9268 36935.1805 14184.6865 5296.2207 126451.266 8748.1022 8478.5865 3942.8592 3771.6305 5521.6 3585.5104 10936.3604 10018.8593 10556.0624 3155.2312 4111.4511 14451.3336 3188.966 7939.0561 238719418 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 5903.5412 4903.0425 4100.1066 5018.6476 3062.0301 4737.8061 12150.3269 4152.7588 11628.7191 6978.7663 9424.9484 5120.1438 5272.83 235419.9066 3997.5643 6611.2669 2777.0499 12327.3964 6752.6767 3486.9959 3828.9683 4543.3911 5302.8115 8578.5875 83316730 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 70055.206 25925.604 49209.0398 31260.5329 41071.6689 11891.2044 175193.3322 331257.2896 45730.7952 67138.9183 129495.0444 79923.3902 4639515.1557 91997.6592 87201.5855 84246.8666 75395.9893 75395.9893 32543.1942 121566.6708 75519.3856 73614.8017 110229.2635 52762.4382 46900.004 44425.5446 63413.2177 82888.5864 152008.3354 91069.0925 103899.5439 48902.4179 76565.7197 71624.8517 85676.4577 220236.1087 356699705 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 11007.8448 10913.8726 6705.7836 9645.8683 11483.8322 9185.7594 11053.1081 5377.7174 6679.5559 10545.2749 7105.8348 160848.2391 16910.0967 8547.0243 16130.2853 5903.9371 5903.9371 5853.2843 17842.5245 10075.666 21914.7707 16795.6857 16947.3441 4350.6387 6789.6031 15782.9718 6003.3054 24649.7241 17052.005 13352.7443 26852.1041 7647.6776 10024.2913 8390.4814 17217.0346 384193427 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis BLC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 6339.7209 13634.3653 7476.2844 5766.4363 2222.2841 67483.8829 4120.3796 8703.4681 8703.4681 6112.6963 3759.691 8280.8108 2773.5837 6352.9351 8505.0648 4670.1628 4023.3137 2890.9634 377539863 cda Carbon Cycling Carbon degradation Starch Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 7723.8509 8426.8118 6402.3629 2445.283 7624.7893 11693.2944 4670.1037 102787.4881 7530.477 10778.598 11624.7048 8912.2211 8912.2211 4672.8103 11109.4423 4978.8827 10101.336 9760.6086 4713.6014 44796.7116 6625.416 12243.9439 3394.936 37912.2285 16230.2013 9015.2794 3534.3796 9162.0053 17191.7508 4768.1813 7670.5307 169117843 mer Metal Homeostasis Mercury Detoxification uncultured organism 6180.192 7729.7705 8819.445 15679.678 5346.1853 5509.0135 3767.7299 2673.3612 15640.6442 6105.9609 3798.4082 5991.7069 8579.1838 4624.1239 5462.8481 3213.6648 3213.6648 5246.238 18994.2003 8534.2111 7670.1361 13631.305 8361.9898 4029.7523 6139.4638 14863.5561 5137.5438 21873.4035 7614.3435 13648.2283 5429.3062 7010.2907 9715.2134 4277.3662 11228.7167 365968471 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3696.3433 9982.4878 6341.1274 5933.7645 3983.1145 5219.338 3038.1915 3786.1053 125075.4495 4772.1345 5988.0266 5254.7224 4620.5412 4074.7225 5968.7059 2915.7214 3052.1972 5153.06 3331.5598 8598.1099 5286.07 6575.197 5027.4929 4377.7213 2546.5488 6563.9574 261607331 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 7377.2802 203559.3926 61068.1137 154704313 protease_serine_fungi Carbon Cycling Carbon degradation protein Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8570.8976 5547.4674 14547.4784 6692.0951 18874.8967 6498.0304 3391.1839 7152.349 46916.2773 4434.1057 169649.8551 9454.208 9048.2382 5928.1075 5519.329 5519.329 7114.0517 14888.7733 11437.7321 10646.6184 10878.6055 13623.7222 3498.906 6432.4872 10987.4576 3914.4492 37102.6068 16543.3004 14921.0799 4551.9298 5974.7929 8299.1347 4589.132 14193.9657 308048812 amyA Carbon Cycling Carbon degradation Starch Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 13127.0105 5527.992 10219.3518 22977.6333 9619.1939 5186.2773 5171.4629 9058.4675 10000.6897 4127.915 139281.8587 10670.8962 7400.0343 8508.8034 4721.621 4721.621 5594.3421 13154.2988 9106.9663 5865.3485 10043.3108 13864.29 4746.0176 5284.7485 15289.3593 5013.1808 17298.1373 6402.8745 12013.9476 6088.3582 7070.1999 8124.3372 5724.1205 11235.9652 159043291 ppx Phosphorus Polyphosphate degradation NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 7534.6473 6727.3424 6700.0221 7338.5733 6221.1706 2684.8273 6107.7885 5956.181 3581.7308 160598.2741 6993.339 7342.883 2462.4131 2462.4131 6258.4151 12417.4745 10285.5602 4738.584 15572.3969 6750.5552 4148.5376 5486.5368 21979.3463 5016.7508 31493.7424 9488.066 12371.917 4343.8784 4726.0341 7308.822 4600.3075 11208.7326 379708080 terc Metal Homeostasis Tellurium Detoxification Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 45087.9374 17586.701 46698.6946 112010.181 30689.0316 34412.4971 43252.7485 27247.0662 38457.9892 82509.7184 34035.2238 2488723.8959 141092.7705 41778.6409 47503.6809 56926.2875 56926.2875 39363.7866 83374.5892 33640.7065 50153.0127 72394.7363 83320.9519 23680.6451 32336.9276 53678.3825 17142.7572 77911.5275 35787.246 90682.3212 20388.4095 47987.9028 27614.42 25523.8323 76942.994 77543338 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. FCIB superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 45853.7573 44003.58086667 30605.59906667 27544.75843333 17856.30866667 49659.72053333 19610.25286667 23009.6508 73696.55276667 16657.18136667 739379.1162 42157.33683333 29574.57053333 25120.67633333 24946.60266667 24946.60266667 20188.05423333 54381.74233333 30927.76326667 35747.05826667 45637.66213333 25846.10743333 31889.37116667 23022.74746667 35518.57333333 37030.58353333 65180.01213333 33827.66613333 41765.2954 23120.20046667 40002.1999 26571.41096667 23568.87933333 35393.31636667 295978615 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 38248.5529 11689.295 11503.189 53886.7072 7405.0436 23054.3336 7525.7491 7746.7505 24620.172 11563.1496 161149.598 10643.0559 19823.1691 13273.1245 18621.4529 18621.4529 6583.115 18794.5331 11301.84 6834.4893 38061.9801 8148.3288 11257.419 37716.2564 14868.2908 10114.5069 558822.3462 28156.0375 61129.9809 8977.457 19262.5079 12801.8864 12266.727 21099.6911 339483887 glucoamylase Carbon Cycling Carbon degradation Starch Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 6156.4162 6102.5114 6224.7365 4171.2359 3938.2727 3472.7799 6108.0541 92876.1978 8348.4139 26698.3468 2204.4855 2204.4855 3770.186 13906.5606 5698.2087 7994.2734 9243.3309 8021.3248 3953.8486 4379.4079 8469.0167 3163.0634 11977.8488 6470.2146 8261.905 4086.0316 4623.7316 4756.4214 3739.5341 10432.672 318059357 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SA3_actG superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10935.0231 28201.9104 4825.7633 9617.2099 4805.3415 83294.342 5891.2094 23718.186 6547.6669 6547.6669 11193.8621 6163.0431 4471.5097 10830.1937 13876.0436 7881.5152 2538.0161 8063.84 3002.434 14465.9498 5608.2264 13536.3818 3666.9091 5798.2927 13977.038 7328.1606 11070.8227 89512298 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 19838.4082 6069.7605 11458.4095 21911.6066 221309.8404 45393.1558 14742.5641 18731.0539 23971.6518 16176.5996 312113.5365 18452.7649 39271.7009 13824.1264 9135.1247 9135.1247 22420.8265 30606.2949 29317.802 32515.6717 75832.3606 17263.6807 46521.405 14165.2833 24293.5664 31876.675 64363.3971 33209.0136 28399.4752 26573.0904 327491.8889 21375.3943 18957.8613 1107064.5454 237807995 amyA Carbon Cycling Carbon degradation Starch Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 13780.0195 19430.725 7949.2693 8681.4896 5962.4164 3491.4772 11119.3341 8509.2406 7199.2772 8859.1409 8088.9254 243742.8246 12923.1672 17069.7683 12187.0063 10710.5389 10710.5389 8286.0595 9303.1568 8096.3716 8833.4932 25959.8501 56808.1256 9957.8021 5507.037 10955.1962 8863.1509 18745.0207 10539.2182 12175.0459 5496.5594 6801.6085 6326.3046 6227.1566 12256.7212 262315123 TIM Carbon Cycling Carbon fixation Calvin cycle Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 8654.9102 6626.7314 7747.4012 4861.2835 2579.0182 7025.5733 4101.9918 173709.6733 10258.8429 108817.7923 4615.0863 4881.1037 4282.472 4282.472 4096.378 9372.1587 4517.1512 5811.7865 6237.7697 6118.9944 2962.1246 4522.7596 6382.0332 2811.3967 15027.5267 5021.0693 13246.4571 3880.0534 5084.9075 3452.733 3675.1108 6521.1003 148537347 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 9796.3687 4445.0644 85581.9765 4432.4672 6147.7986 3073.7635 86420.5825 4113.7572 4730.4024 3689.1202 2685.1463 11144.6672 5509.5225 4584.7123 6220.8625 6552.42 3372.261 4154.4394 6947.9091 2422.7268 9438.7649 6098.1787 2705.9524 4588.2946 4974.9009 3085.3899 7162.8712 77732597 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4809.6927 10954.1948 15701.8623 2902.4026 3958.1975 6587.9522 1874.7274 1874.7274 10816.2731 2046.2903 4534.1305 1964.7289 2248.6528 8133.4211 297550434 mannanase Carbon Cycling Carbon degradation Hemicellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 18163.9345 72272.3472 17955.3879 15410.3473 5537.4952 4633.7227 6523.2657 20795.1158 3627.3615 7386.7721 8016.2352 133235.0579 5631.5932 8588.139 10227.8937 6700.8515 6700.8515 4199.9809 17266.9536 8102.9936 6456.5825 3758.3656 3616.0085 5283.6904 13132.737 29107.6154 19021.9691 12259.3433 12613.2603 5697.0892 15975.0453 7325.3278 10202.2237 12156.5314 99083137 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 197013.6854 45307.6116 34404.7248 1907445.0602 17054.0298 24478.3393 90424.2288 39127.798 44707.5955 44163.7601 677679.8342 48423.4011 37537.8146 58670.3789 39861.3695 39861.3695 19882.1902 51412.5855 31872.4352 39699.8575 222720.5597 40419.6518 25097.7741 42285.357 24644.2012 28931.2598 142865.4019 50442.3194 49866.2298 20082.5039 46756.2809 61692.5142 18952.9542 48322.5801 359404119 amyA Carbon Cycling Carbon degradation Starch Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 10600.2095 8863.7044 13991.0795 46125.533 13061.9906 44565.6361 16425.6427 7603.601 8954.3242 16331.5532 18099.7984 230980.4258 8492.4951 12668.4485 10351.4719 12846.2381 12846.2381 6661.6523 18982.6688 12586.9501 15432.9699 64229.7076 11497.0962 9065.5265 9086.4906 16737.6733 20046.9316 43268.7281 22541.8073 33587.2903 9939.3353 12679.6205 11269.1578 53288.5285 12442.5174 46115498 endochitinase Carbon Cycling Carbon degradation Chitin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 8375.9277 7093.1393 6380.8765 7379.4135 13583.2721 22487.5665 9245.9727 7735.844 11509.6181 174484.8854 11220.6948 8046.479 8426.3118 8426.3118 4733.1749 9827.8181 8292.1906 12940.8629 55504.2634 11572.2105 3403.3711 5011.3266 11259.7362 3206.0328 16918.118 5559.0078 19686.1231 3564.5633 6329.4558 8625.1635 4855.262 11409.4758 27377730 alkk Organic Remediation Others NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 18568.6065 19519.3972 12310.749 10302.7744 11510.7187 8689.8808 9283.0194 4806.7814 7044.7775 7966.7148 3791.3108 203475.385 9843.3934 11503.6719 10867.9421 5446.7814 5446.7814 7462.3961 17188.2544 12240.4969 15711.9831 9549.0433 30932.5844 4631.0676 6171.6173 12775.3412 5352.4674 28945.5769 17223.8144 18648.7429 8010.8272 6784.7604 9581.0934 4827.7927 16047.728 118744903 nifh Nitrogen Nitrogen fixation NA Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 32427.2011 22968.2535 15340.6029 29796.6635 19838.734 11085.9404 101479.8927 21660.6049 11167.774 26303.3889 22617.2809 12742.5843 649425.6868 30897.0519 27161.9289 25769.681 16526.4597 16526.4597 18802.2214 39183.3492 27182.5879 23182.0957 22641.7258 24846.6475 12935.726 12579.1507 33853.3285 27349.2926 60785.7466 17478.824 30793.0351 19014.1893 14935.2748 17743.3654 17551.4359 32786.189 32895106 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 104872.4267 75891.156 25331.6849 35360.4635 13232.5622 14485.4734 25626.5419 41930.8342 56916.8711 60284.2034 33241.5166 3720393.9069 37020.7069 46922.3744 59470.3125 34654.3628 34654.3628 22181.6822 64603.1956 23914.1452 91649.6361 35860.9858 147106.9352 20530.3661 39507.9228 52038.7516 62963.1796 85906.5137 133884.1238 44801.8965 32675.4327 39240.205 51621.2604 45031.4819 31771.6106 344259646 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 129117.1431 25085.6529 68948.2955 10673.5881 46310.8191 13713.0308 46446.8472 47188.4612 38430.9461 41304.0996 79390.0931 46109.3276 2426190.3778 130881.4242 88572.1658 134739.7527 44818.2892 44818.2892 54696.4757 51878.0868 39590.2631 16673.8827 124872.1852 54308.079 32353.0086 23078.448 80892.4302 41308.5834 96307.8373 90561.3237 153779.8694 46270.8513 55642.5597 45307.4319 37969.1002 37751.9014 292560789 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4261.4981 27282.3754 3259.0474 3259.0474 8920.8145 3920.337 3019.4708 317405870 cpnc Organic Remediation Other Hydrocarbons NA Achromobacter xylosoxidans C54 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 18905.6092 60079.649 44420.0205 9584.0728 12170.6102 31618.2691 14579.4761 10619.7317 14691.0285 10626.8908 9378.2591 273689.6674 17148.6084 19009.802 22921.6465 16586.7167 16586.7167 14905.1858 25794.4282 10417.6692 12884.5829 39362.7883 15220.4033 9108.2303 22300.5607 19074.4309 14098.9709 33638.5468 467397.7918 23219.0841 4375.1053 11662.6709 11792.9885 5139.4677 29797.6153 78693100 xyla Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5852.8716 7539.6342 6905.9635 2347.4728 3242.5262 3963.0652 3561.9796 2145.2808 2145.2808 3262.9087 5939.1069 3479.9987 2248.0772 5831.4347 2337.7732 2562.7121 2590.7182 4434.3483 325479453 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anaerococcus prevotii ACS-065-V-Col13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 41302.0044 22141.9084 11716.1677 8316.8112 156479.204 83657.9396 57524.9839 12184.4701 12168.0661 12496.3691 8797.2067 253537.0476 16666.5002 10903.5798 13768.2781 15065.1245 15065.1245 9965.2646 46369.8432 11348.5216 25115.4278 24693.711 12970.2884 8962.1417 8634.1618 17755.6632 13346.206 33560.1517 11530.7528 17561.7444 8309.0952 11766.2225 11459.2571 10153.65 21009.8366 497884 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5688.382 5528.1843 4334.88 3795.5574 3120.5001 2150.0805 4979.0351 6642.0773 74970.3949 4977.4746 4450.6811 4667.2625 2149.8061 2149.8061 8276.7557 10578.4003 5480.5622 6857.4822 6199.2375 9454.5353 19520.3348 3634.4387 7331.2629 7217.9677 11385.4384 4284.8672 8953.2005 10631.8895 4421.3096 3913.0247 3509.0101 20851.3928 358244640 linb Organic Remediation Pesticides related compound NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 4358.277 6521.08 17463.04 5718.4968 16327.3358 3215.0853 3682.9941 3685.5742 82701.983 39191.3735 7409.8383 6813.2598 4061.1956 4061.1956 2641.1258 7396.6958 7077.662 5746.8452 4827.4097 2168.221 3053.9276 8017.9089 4946.7934 9947.5194 9568.0301 9021.7041 3637.3369 5158.8243 25153.1007 302415619 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 9977.6805 10991.6595 8206.4703 61411.3719 8274.5281 3151.2692 4974.5773 6745.215 29592.5171 111132.5021 16346.1497 8255.8329 31902.7867 6377.4643 6377.4643 6076.9005 8968.4298 7533.7201 8559.0329 11563.1369 10371.0249 2978.8405 5815.809 11935.957 5791.8116 12242.9899 8024.8534 17770.2893 4628.5231 5645.7423 8220.881 5144.1038 14319.7653 89113908 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9290.7446 24987.7156 7785.3905 9534.6459 2797.3296 10408.069 22122.5465 14399.9586 233462.1204 13736.1189 11910.6612 9768.9073 18884.0756 18884.0756 4665.4765 20031.2068 10321.9114 10742.337 42650.7429 10216.0494 6425.8271 7327.8693 10155.6854 11410.0128 24707.6181 16220.0832 23383.4799 21135.0009 14540.3521 10562.043 8401.2383 9339.5644 83814676 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 12681.0009 4332.0158 168106.4242 4250 9459.9041 2541.1127 7313.007 20293.3325 30191.7233 205611.4629 17151.0858 16445.1607 15181.6035 5698.918 5698.918 6816.2879 20850.0363 13016.4826 12599.2472 10377.0547 10843.8247 4016.0009 7754.521 14167.9426 7950.0629 21597.9403 13934.4419 20431.9366 10731.6213 9225.5059 10468.385 6729.4803 9286.9514 319417625 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 27403.5209 94510.6621 7005.454 733291.3784 20102.5285 13929.7596 41087.2237 14444.7566 38318.0052 31378.5174 15948.2987 10337.1924 7247.3353 25049.7547 25049.7547 6490.0241 9684.0806 20882.5198 271670.3963 6239.4516 3858.4218 15549.3882 10055.0881 8576.8246 24226.2266 94531.8849 9171.6612 5544.8634 9007.9632 7840.7345 7195.7248 344037203 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 25922.9956 1684021.5069 8609.3919 9919.6057 13192.6772 9281.3458 12221.0333 19990.4814 7408.8821 149573.4173 15649.691 55183.6738 12894.6596 6388.5521 6388.5521 11830.1815 17397.3078 15538.9253 14401.1365 14085.2447 14794.332 6237.3459 7356.1145 65498.4067 11053.7702 56793.4658 14443.8981 16172.7958 8112.6184 10637.8709 14300.6259 5108.7447 11389.7191 209401718 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22204.6768 18408.5426 13598.2282 18461.1244 12275.6789 10936.2513 15877.891 31804.6289 9131.9995 12412.8264 30798.7649 9969.4988 359457.6822 54494.8606 30504.1381 24733.0882 12657.1754 12657.1754 16430.5173 28858.7056 27221.3209 18467.9857 59011.8439 27989.8723 23300.9226 12801.6911 22707.9667 15380.894 42930.955 22807.5443 29883.3612 21821.2746 21573.5682 24675.4935 10441.3887 25301.5142 260220159 alkb Organic Remediation Other Hydrocarbons NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 9124.7753 5058.5876 43340.2573 8336.3827 11354.3085 5755.8473 3353.7924 3353.7924 25632.6355 6621.269 19559.5618 4366.8196 3626.3515 33934.5275 37744.4926 8007.9152 5732.8573 4863.6696 5546.2335 342316526 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 9243.404 127935.177 10903.6283 7423.629 17098.0208 8330.1821 2168.3633 6771.6964 7114.0982 6092.4124 188686.9969 6548.8898 42327.0472 6256.2123 4846.7808 4846.7808 31657.4596 16152.5926 6655.7518 10656.1377 8089.2476 9387.2634 4515.881 4752.7443 10428.6765 7956.9044 15785.5536 8441.258 8504.771 3698.0508 5923.1661 8664.6742 5067.5098 18881.1458 28193601 hcab Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. SBUG 290 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 4716.7252 16039.6132 5340.41435 5254.8763 15862.96775 34059.1423 9840.99745 13747.09725 3276.80675 5379.6973 18171.68175 2990.28565 199551.2559 4561.27945 4504.83875 9419.60625 2809.31645 2809.31645 4717.3101 10221.6106 7736.2813 5033.38025 23069.5921 13190.0976 4372.30995 3161.76745 14866.82485 4523.66185 14344.51545 8759.47015 67151.70645 6451.83325 6074.8684 7215.58745 4239.6479 7245.03895 365892002 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8313.1426 6433.8695 15063.9203 3946.8907 3450.4938 2785.5677 2995.7207 4720.5361 4448.9178 83835.905 8136.5513 7612.7626 6137.8131 3653.7933 3653.7933 21400.3857 5686.3943 5693.8596 5497.1563 2458.3417 9550.2159 6330.2583 15939.8146 9032.3943 8828.0904 2922.983 3719.5157 3965.9809 3019.4763 4967.0496 116695854 ben_bcla virulence NA NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 11567.2987 7705.4791 3919.3195 10625.5743 6360.974 6067.7983 6139.9028 8729.0784 10260.8209 5552.8009 203367.6365 20504.0217 31868.9114 11426.8339 5233.3761 5233.3761 7032.0844 15705.834 12467.7581 8048.7018 13810.5934 8346.1352 4550.2412 7616.9656 12929.6379 7095.2707 21378.2166 7966.2939 19542.4979 5179.7839 6962.0569 9512.8121 7591.8922 10829.6832 323364650 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 18689.7125 16605.9189 14802.7875 10062.1862 19690.9316 5861.9679 20743.32 15910.2199 12713.2411 276839.0765 18174.068 14801.5088 36776.4848 15041.0936 15041.0936 9141.5463 25861.9939 17923.1879 23576.0665 26724.5014 1576602.0564 9764.5093 22466.9474 23899.9845 13536.7928 11978.7892 18842.2318 25711.1686 7978.5926 26438.5174 16089.3633 19454.393 20550.6005 33385593 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4982.6559 4013.1597 8236.7858 334887626 pcag Organic Remediation Aromatics Other aromatics Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 11857.9966 7750.9454 17085.7056 24634.9075 6460.1444 8312.9263 17659.099 15891.5578 11602.2303 11069.7505 6712.0875 261120.9204 12755.7367 13221.2189 12475.3067 9758.0565 9758.0565 8988.9369 17425.5061 13504.5009 14008.8013 13783.4179 14055.8072 6696.1303 10774.0734 17029.2532 13739.4487 34152.4038 15011.6129 15897.8394 8629.1641 11895.9045 8322.6688 8583.859 19561.1299 37591408 rd Organic Remediation Chlorinated solvents NA bacterium VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 4299.001 9262.7833 15990.596 7561.724 4133.2605 6832.5623 2574.0801 3992.4026 7167.2761 149346.6546 6828.1334 6816.0178 4509.8006 2699.255 2699.255 2795.0162 7381.5983 7890.1936 38181.799 4947.3701 7907.4482 2966.7567 4729.2128 9344.746 2901.1058 12781.2202 10213.1543 7341.0322 2465.9278 3977.6504 3240.7332 13433.0877 150407360 nitrate_reductase Nitrogen N Assimilation NA Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 20493.3284 55978.4629 5728.3102 37548.0663 29261.8567 15342.7605 30036.0833 71431.5454 32185.4651 21904.1854 29192.9456 546225.7839 20228.1108 15899.5029 33173.058 23435.2859 23435.2859 29607.0588 56126.1305 12705.7297 12142.3024 37903.448 30738.7553 138237.5618 19023.1349 23300.5578 30054.9122 91495.8129 56438.1988 64218.8556 17271.6943 34267.9311 34928.1842 10174.3519 27468.7038 357408793 narg Nitrogen Denitrification NA Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 12971.1615 12034.7648 20694.6536 5306.1092 8881.6154 3050.6661 9269.0159 20543.234 9748.5031 115089.5995 10887.8278 15111.8927 18082.8491 12486.9859 12486.9859 9469.2159 20556.5831 9023.2849 8454.2897 12513.372 12642.8214 4118.8221 5659.7253 14959.9078 4469.2321 16671.3529 17380.9987 17516.9706 4263.4116 10601.7206 8920.4593 7823.083 33001.2849 306921898 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 14452.6038 7444.9839 20940.7948 10446.6657 4538.5445 6581.88 5079.283 6244.1963 7321.1618 1531142.0808 6207.9599 6547.0164 5993.362 6959.6575 6959.6575 5741.7324 27341.2006 8150.2464 8394.6628 34973.6319 7445.7852 5005.3675 3967.33 7322.7148 5165.9019 17898.1837 22825.1446 7610.4295 5434.3649 9487.0625 16118.4231 6842.3785 28224.7392 111116450 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14537.3518 6125.4265 6358.3069 88741.7265 8438.01895 3936.94935 10805.5473 213298.8136 8643.7848 13624.63455 8793.06695 8793.06695 17974.81585 7873.7609 7420.1094 9200.77645 3032.27705 5975.03955 4611.1871 17093.26045 10853.10885 6398.1374 398113178 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM102 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 44042.5684 28838.5294 8224.547 31034.9741 33852.7978 43614.8034 13677.3316 51979.7298 25267.5985 43653.2541 249920.086 14342.4775 75653.2027 53596.5226 29097.9561 29097.9561 26391.8145 38779.6955 18509.9016 20601.0378 20315.4293 43706.7979 24856.0951 17658.1584 28728.3533 29680.1168 54574.5309 39443.7597 49836.2469 12653.4294 18782.7599 53807.6351 14270.1319 18906.9346 378598982 pgk Carbon Cycling Carbon fixation Calvin cycle Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 23557.0689 57822.1466 58647.5277 267491.7425 24523.172 17588.398 23388.0294 14815.7059 54585.4373 53447.7117 32559.0889 123147.3783 3319972.4609 24019.4479 53033.5042 59188.5769 54137.9433 54137.9433 17727.3228 136206.537 157954.9427 32406.9463 62357.1574 15868.009 123617.2512 36538.0259 27975.1151 98730.9846 207269.4537 64528.406 46884.2953 35736.0797 25444.8478 44004.6301 51303.3271 39304.48 353209637 PRI Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 138201.685 17475.284 6118.28 4504.2503 21760.5191 10658.1186 17772.0823 21880.1032 17840.5253 909260.3498 16391.635 557089.2076 123894.9153 17621.5425 17621.5425 30124.2278 20938.307 19887.221 17426.6451 24194.1557 15527.2714 10444.9815 26862.1898 14523.0825 12143.0718 27428.792 17610.9015 21992.275 11032.4369 20861.0445 39997.44 10072.9745 43942.7676 255932117 glucoamylase Carbon Cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 6494.2337 53755.4165 2544.708 4870.5421 3794.5532 4682.8866 3161.2092 3161.2092 3407.0988 6660.7185 3986.318 2679.4553 3148.0593 8157.6524 7901.167 139478547 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 16732.5232 13101.1528 443216.3116 735693.5433 5625.8221 4280.8587 6633.961 6625.3998 666166.4128 356984.3891 7749.5811 4785.405 3000.6801 3000.6801 7546.4721 7923.2089 6523.0746 10645.9507 5199.8134 13565.0828 105885.1261 106210.0936 883312.3372 12194.355 17017.8649 11431.0577 5342.1351 10265.5245 5979.8211 118472160 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 187450.9304 91914.7108 39721.6181 242276.2953 22749.5578 83600.5601 134116.1498 92390.5215 121064.0251 163937.2163 141116.686 2958044.9836 99349.5792 159774.2923 163715.4153 143229.5175 143229.5175 161616.1985 194473.597 99997.0584 164385.4171 213867.5575 166808.8266 62360.3769 134021.1506 100257.5631 94422.6506 441946.4862 112651.6138 127162.5186 70323.9297 137030.3667 98133.649 113330.781 196879.9438 163746714 soxY Sulfur Sulfur Oxidation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 28563.3304 19372.9884 26710.9849 15906.7257 54130.7444 21234.2247 14998.4633 15592.7379 14943.2917 9173.436 372364.637 15869.0097 11777.23 11992.4992 12006.7416 12006.7416 9232.5774 24382.1738 15147.2046 29902.6815 19230.0364 10299.5524 8910.8963 13175.9728 21770.8014 10972.997 47618.9716 20390.0528 27871.2156 7553.151 9478.4718 13888.1848 6931.3281 24861.2134 121606939 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6832.0752 5294.594 20476.9255 4245.4237 3021.0912 3193.8978 7444.9541 10286.6939 363129.7686 3748.5728 6391.4715 5074.5186 2211.1564 2211.1564 6273.6036 6478.5937 6592.7939 6026.8132 14703.5469 4762.518 3470.4905 3978.6905 8598.5992 4670.2062 14025.918 4215.4427 7322.0229 4270.8231 5650.5108 6545.0933 5325.0649 70128.1276 297549894 mer Metal Homeostasis Mercury Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 12074.8255 14238.1579 9438.1364 12061.0675 6772.4934 6404.1258 11030.3617 7518.4414 15193.2833 12836.621 8546.6723 260995.9857 11534.4884 19177.8609 11248.3489 15230.654 15230.654 5730.7605 16499.3283 13183.8215 18706.0565 19799.3088 34590.8311 4773.1515 8000.9754 12263.4002 5319.9469 28837.032 6455.5389 18349.1611 7036.3923 10160.3639 11057.9352 6457.7926 15244.2528 18034316 dsra Sulfur sulfite reduction NA Syntrophobacter wolinii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter; 75412.4442 23741.311 32544.8621 60226.4251 39883.9674 17462.1255 27659.5881 58317.9363 33238.9255 67018.147 43866.881 38749.6294 1269574.6667 90806.8634 58717.375 42619.1033 54171.3628 54171.3628 440896.4629 82151.8453 35307.993 597499.4036 128289.2334 46376.0576 22088.1659 234380.727 43364.6624 86778.4089 100159.3554 62083.589 63221.6672 47337.1473 42715.1528 185710.6208 90313.4902 60959.8519 148242354 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 39102.4329 13436.6518 15177.877 19973.6402 9153.9584 10764.6837 23732.6212 21040.1201 11677.3225 20131.1096 30447.8034 16008.8504 516976.6 40401.4784 29385.7243 23861.5169 22349.4916 22349.4916 15061.0277 55568.1846 27872.3398 47794.8927 30660.2777 32849.4189 15421.1763 16583.8494 28149.9522 18278.9503 51104.9101 40822.7854 34804.8012 12875.7876 20869.0954 21738.0857 16104.7388 35640.0851 40362783 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 8443.6097 5555.48 2719.2584 11246.7749 9667.0719 4558.0571 4162.2137 3127.5841 184197.4205 4492.0505 11487.5865 3484.2792 3484.2792 2947.1439 9197.0684 3704.12 10400.74 33767.5911 3829.8066 2580.6037 2590.606 3049.8034 8296.5221 2179.3656 2705.8674 6150.9452 2511.3951 5108.8769 365895486 PRI Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5017.1317 3974.0911 3035.3727 3577.8104 7439.0333 5733.5087 5098.2478 691845.8779 3690.4506 4779.0946 8762.3674 8762.3674 3686.5672 12142.5423 8327.789 7581.6521 19860.691 10781.4487 3766.4465 3356.2684 15294.9078 2642.0549 19632.2702 9236.6115 12635.4198 3904.442 6996.3209 4567.0525 3688.6935 6722.5465 33391309 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23386.9439 23934.6357 29270.0672 9012.5483 199334.2866 5391.8387 24272.6744 37744.1066 180791.2561 192319.4627 23772.7617 16808.2585 21569.1934 16147.1044 16147.1044 6784.4197 27401.3416 18495.5707 5159.0454 8954.8725 8271.3627 6281.9035 11085.117 321710.8878 44813.2739 360584.0154 26162.2773 28916.6216 7705.9137 17936.9776 11560.0168 10435.5372 8981.7537 69938258 nosz Nitrogen Denitrification NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 11744.6204 30083.1348 4926.6374 18784.5082 15610.8143 12458.3092 3808.7316 4435.4836 35366.4195 8659.4554 115673.9608 16930.4753 8666.1988 11058.6079 4826.6542 4826.6542 4902.1731 18486.4062 7427.4549 48401.0433 6928.97 6366.2657 48935.8192 7425.2759 11553.7797 6885.7493 22586.746 12341.242 12238.9911 5882.0568 12588.9892 8306.293 6607.7149 22704.3769 88948715 soxY Sulfur Sulfur Oxidation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 5877.7069 6764.1579 36240.3513 3372.0023 2207.6669 3611.5834 6056.536 3772.0102 141279.6244 8097.1863 8348.431 12143.0847 21007.2148 21007.2148 4964.5916 16618.2073 11265.4266 6004.376 6012.4782 3297.2327 8352.5696 12510.9038 3386.9421 18913.3206 9583.8074 10970.4695 5117.1035 6526.1892 11024.0096 2905.8219 5717.6079 381168246 TIM Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 48040.7791 66420.3195 104279.6998 37378.1019 8773.0536 40385.2578 89009.9984 39537.1422 64862.053 177131.8649 50766.3952 2424088.4813 112286.5478 57061.2789 114047.4455 91860.9205 91860.9205 61073.8295 90156.1395 74529.7741 30939.1979 72582.6092 26564.4316 44153.9306 40657.468 176219.1096 42519.3903 127693.5561 65253.3975 63706.0423 23288.3501 36201.1726 51403.6264 28214.1687 153886.6092 339512044 pme Carbon Cycling Carbon degradation Pectin Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 35105.5729 5288.4055 52225.7413 12302.2832 6343.372 9562.7304 14333.9325 6505.2234 14934.8263 9881.4941 102764.8036 9120.8175 11307.7039 6345.0106 8145.6073 8145.6073 16779.0846 12851.4733 7419.7401 32521.3353 21331.2519 4630.3751 5659.0785 35530.1783 8994.4774 11758.1391 22798.3007 16144.504 8505.3265 17898.9182 9635.7623 12860.612 9662.0503 14740.5532 291513576 amyA Carbon Cycling Carbon degradation Starch Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 24602.512 14086.2398 6971.2365 17433.8897 12101.8504 13025.6344 5058.6887 3135.8596 7424.899 11864.6911 7058.3108 153285.4599 16650.4006 10564.5339 17062.1444 4414.9056 4414.9056 9129.1129 30854.7971 10915.9848 7778.517 17819.3047 22310.7645 34224.3502 9587.7983 22570.1668 4983.6277 33055.6219 9630.7598 16569.6048 7774.337 9582.1733 18866.5411 5007.5798 21531.1884 296426177 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5040.9946 10665.0992 2901.1172 11191.012 5717.7235 5092.3111 2690.6766 212893.8831 3789.1946 4206.5165 2846.1108 2846.1108 9206.5431 14529.0991 5015.7392 5124.9859 7543.8382 7255.698 2402.6986 2654.941 7442.1502 2175.8159 10348.0091 10654.4508 21718.4698 2841.1662 3503.292 3761.1759 2885.6331 6075.3356 239990802 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 3790.1339 3604.0822 52723.633 2124.8218 2124.8218 3958.4976 5373.767 4280.3986 4119.3666 2486.6616 3508.1979 5916.6065 3973.5992 3914.0302 6049.4988 1770.2609 2746.3846 2786.0651 300654650 FBPase Carbon Cycling Carbon fixation Calvin cycle Hydrogenophilus thermoluteolus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 12157.3609 12977.475 38986.1972 5678.0772 11888.0339 6057.0748 8764.3018 11694.1593 90848.4961 8278.735 7129.945 13578.7912 18960.1917 18960.1917 19216.6196 48122.9357 10830.0417 3731.4067 15323.0138 9245.6171 39447.5531 8223.4163 13688.6131 8682.0978 11661.1348 2269.5402 12763.8295 7546.6242 31524.2783 134142943 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4784.7149 5036.0144 3689.4586 3775.5713 3947.1336 68735.929 5511.2631 4449.4489 3358.1245 3358.1245 4111.7299 8811.3849 6117.3802 5748.8016 5943.1426 2376.5281 2764.6309 5419.0157 2987.0211 8431.1881 7639.2791 2368.2267 3496.7946 3404.5932 3157.4248 7401.3664 389865306 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 460148.767 31864.9797 229736.4611 186113.5432 221388.7142 70901.2053 192029.4257 368274.1178 99802.6214 162989.4875 425863.5902 257443.001 5051655.0353 231023.9462 250228.6429 529505.6375 197419.9724 197419.9724 125645.7692 319952.0807 210590.2859 314326.2039 256991.5767 1504513.2943 185368.1972 188238.9944 333673.761 125765.6484 615723.0307 384998.553 249820.1253 126148.6425 260614.1712 246931.4469 120402.4311 320516.1409 326944997 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 8035.8736 6862.7897 8977.6058 8987.5188 3943.841 7353.4266 8684.6412 6810.5549 122038.5364 7340.0101 23159.7157 4936.8607 3016.5801 3016.5801 5700.1053 12909.0923 8329.4856 10014.1683 9899.0799 8486.7149 3858.2279 6485.7967 12404.9649 6997.8913 17448.6802 13636.67 12618.0227 7179.135 7823.1772 6653.2396 5408.6183 19249.884 365898088 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 24847.8356 6781.7662 30666.9689 34060.896 4226.965 23334.9669 31759.3085 17997.7218 12453.399 33734.8799 15038.2538 1954656.8261 30664.2554 14101.6378 18712.1629 20436.6063 20436.6063 11309.7219 33228.6915 146236.5591 14570.8664 78019.1903 37975.6023 25665.4368 33152.7986 24535.1386 35846.8717 73260.7127 9154.7348 99707.914 69543.9992 51703.1093 86274.0353 32583.4179 34407.3907 329758681 endoglucanase Carbon Cycling Carbon degradation Cellulose Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 24367.7186 94798.9164 11052.3393 13706.2811 14212.4465 18484.9726 10946.2126 10511.9172 8652.5735 14829.0877 20493.8885 22386.2662 400284.8138 19911.5025 139932.8852 19156.2551 15983.1172 15983.1172 15744.3219 34164.057 13867.5705 17722.1478 20209.7535 11875.6067 15157.1766 72410.3668 24229.7564 41572.7425 40203.6352 23427.8309 34856.5095 9339.678 21904.6219 12095.1517 11518.6931 14457.7608 62512339 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 10228.0211 7416.0223 5288.5624 85037.1847 3211.9449 3211.9449 3506.2626 16263.5564 5200.7678 4003.2933 3676.2092 8191.2275 4087.712 8441.9467 5513.1656 6213.9345 2759.5123 4312.8515 3422.2171 24952.8001 26278886 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31505.2308 14413.0291 17500.8274 9194.8975 11952.5185 26175.7596 8271.0744 47400.9908 17795.6741 24094.0178 373679.2875 14348.6856 16630.7101 18298.2607 11414.6161 11414.6161 10470.2563 26774.6327 21032.3641 17150.2772 28541.352 49909.3444 9696.6771 18108.3674 23369.0177 10541.7004 33789.6381 14285.2987 20147.9858 13851.4114 12744.0465 12588.7564 13698.0714 27890.8652 387875967 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 92351.8325 14461.6268 32756.7522 34577.9091 31936.5692 10856.6199 44653.5437 44919.1818 24311.087 25662.0788 61194.3207 27467.8727 797628.6039 125382.8227 39954.3378 24693.7258 53437.2145 53437.2145 30492.2443 90298.8815 43571.2082 89485.5681 74970.8345 45230.5909 23737.2048 58493.3935 53039.1917 34000.3598 106839.7485 49571.9737 50143.453 22807.8267 43289.2521 36753.0047 22859.5029 76781.1335 91795175 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10158.7062 4513.7168 6544.5575 4250.7895 7197.5544 8714.2269 8714.2269 4137.9663 7301.1839 5891.1405 3516.6847 3245.4522 7196.9981 3903.4099 12377.6035 6625.9337 9859.5736 2042.7439 2884.2827 3305.5424 146339288 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7431.1725 4702.9543 6106.9945 4541.334 3926.0056 3165.9158 3169.2015 129778.5305 27097.7226 28721.9215 28721.9215 2818.8034 12100.788 60642.3346 6568.8828 7269.2149 10931.9175 3365.4169 7386.4373 15690.2894 11988.3733 4853.7463 6194.7224 2622.6283 4366.1727 4437.164 2944.9858 6096.4131 148242001 endochitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12714.18355 10384.6502 25450.8287 6092.6809 13051.8205 3667.36095 10178.095 9938.80845 9246.68985 10469.12755 5966.211 5966.211 7556.2393 14783.12075 12005.79905 8991.76515 12080.11505 7311.8879 6019.46995 21020.66345 12032.82955 7051.50825 9432.049 6173.901 16220.4201 353199507 pula Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4615.717 7251.7885 13383.9401 12645.3264 2320.5093 9202.9107 2134.1919 5970.8955 6332.1525 334931.56485 10844.92495 5056.95275 5056.95275 5223.6154 11889.5216 4965.35315 7493.0522 10914.41065 2587.6125 20619.0764 3581.06825 20933.1938 9794.35225 11607.71215 2685.38895 6039.3833 7036.7861 7625.3483 8843.96855 372268833 beta_agarase Carbon Cycling Carbon degradation Agar Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 153546.9465 91492.2884 243194.4203 785430.7561 153641.5936 157073.5333 81650.5824 79543.7426 110343.5821 304458.3211 149992.5502 5847502.6351 115085.113 203357.2195 177181.6217 288244.3665 288244.3665 63409.808 162453.1823 131416.8375 233705.8185 283787.1939 180604.2059 448562.6519 181296.5238 140653.0468 157666.7871 391025.1154 203813.2495 358546.3535 105174.0884 103418.1705 186116.5226 200374.294 149095.2368 256823637 tehb Metal Homeostasis Tellurium Detoxification Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 6593.1695 4755.0111 3062.3256 3469.1901 5700.6363 120731.5804 6679.0253 6770.7885 3593.7261 6888.8317 7889.293 20964.8707 7072.6 14677.6775 2446.8438 3395.538 8842.8693 2490.0728 14171.763 6904.8953 8906.0119 3251.5012 4123.5647 5465.4785 4146.749 6743.9461 373850727 rgl Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 9364.6227 13408.8867 11544.7622 5233.3561 3371.3983 13068.3811 9769.2805 6748.3537 6273.5878 7070.4026 206467.5356 8015.7581 11368.8931 9659.9666 19938.4276 19938.4276 7567.2481 12591.4329 10305.6491 14674.1491 12072.0241 6488.3431 4896.5332 11247.9998 43360.2182 4176.6811 131205.3019 14175.1508 10196.009 7498.3224 8584.006 9556.571 3643.9876 9877.1192 361058153 rgl Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 42668.521 2387.7366 4750.4447 9345.6002 11887.6228 6076.3958 4684.562 3084.5515 325948635 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 25279.7578 15946.9154 25525.341 13579.4174 13376.0365 14038.4859 10765.5209 19111.4992 19650.3939 11876.9429 412195.8673 17955.2901 31914.6134 16028.6537 10553.4648 10553.4648 14039.4714 33946.7275 13961.631 24489.6983 21111.4194 27249.7454 9836.2964 10018.4263 25496.7649 10071.8424 33019.4827 24561.73 24303.3113 9742.479 15573.9275 16018.2553 10014.1168 35116.9803 353196959 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 10569.4369 44861.6121 44861.6121 6861.9742 19874.5102 2173.21 343954410 nbac Organic Remediation Aromatics Nitoaromatics Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 12399.4019 16838.9779 6241.3417 22088.4912 3512.07 5870.9397 3288.4479 7735.2691 9213.5972 37109.5384 212277.4373 8924.0435 8331.7167 7155.8269 7562.0553 7562.0553 7060.5848 21898.8106 17836.7505 11282.7336 20721.6455 14944.6334 4385.4124 9900.8907 38483.1011 4602.0351 23756.1726 17431.2737 16386.3657 5107.1986 14697.5855 25140.7588 7164.6333 35117.9433 289548457 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 4574.0033 4530.4648 8233.3646 2261.7392 3557.7764 3686.848 373880803 alkb Organic Remediation Other Hydrocarbons NA Pedobacter sp. MS245e superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 29405.1031 120592900 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10616.797 10737.3977 9798.517 13751.9997 12704.4418 9817.2071 15650.8662 5116.6438 82256.8672 14886.0166 129333.2837 8761.1799 10296.1989 35993.9055 5809.1533 5809.1533 5731.9849 11443.4881 9520.409 11630.5485 84326.7829 8716.6173 6096.8332 6217.4113 11268.3333 5382.6529 17515.0431 14549.0593 14792.6605 6928.3865 20493.2891 8442.534 5207.0093 6706.8303 283818855 alginase Carbon Cycling Carbon degradation Alginate Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 6862.1455 18876.6402 17996.9212 108146.874 5318.9381 3035.5251 6204.9083 6989.7615 4540.402 4540.402 6327.5411 8726.8741 4232.15 4959.3423 2555.1382 3087.1209 27002.3948 25369.5357 7628.1721 6449.4636 1788.2347 3461.8779 2495.8749 206685037 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 8128.5863 17213.336 17153.2493 2119.6318 10822.7663 3050.6963 6662.3211 7013.2409 12041.8951 191988.0662 8750.8581 10444.8393 4399.798 7479.2897 7479.2897 10067.636 13787.6671 5640.1368 8454.8631 9720.4536 3871.0343 7069.1589 15438.016 4585.7396 9804.5538 9210.1647 13623.981 8911.7207 7629.2521 8378.3516 8714.5129 6609.1763 229591161 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 26910.7101 5390.5409 6939.3668 1913.9578 5344.9841 3522.1527 4930.1587 4572.5512 3034.9566 4261.2819 6091.6031 7237.6298 3212.7147 3212.7147 15367.6421 4102.9858 3552.2496 9034.3357 10601.2557 2484.6384 5442.1637 8360.2461 2506.0278 16034.8748 8814.829 8397.9846 2293.6121 4219.8293 4230.0383 8231.0978 149201556 dmdA Sulfur DMSP degradation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 45225.8925 20206.6563 53819.9447 77646.4297 22555.4073 31821.8744 33770.5948 15829.2913 31660.8274 36550.9515 22573.7414 866900.8286 34787.5112 39375.2884 68391.9348 33095.3074 33095.3074 31512.5528 55391.37 46007.4441 77115.0067 38482.1139 35514.7845 20622.7348 22089.5954 57890.6261 21151.9008 71645.5106 51170.7329 54812.928 23324.8494 25745.6287 24551.1326 29318.3758 54024.8446 28868949 atza Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 13011.5277 12335.3997 84131.5471 5234.9253 6717.595 50177.3124 17629.6451 17335.5318 35116.4957 27430.7589 17523.6663 80736.0659 11237.4855 16919.6688 54103.3429 97215.193 97215.193 17327.7982 31098.3717 12453.9818 68251.4852 35265.531 38650.5627 14545.1468 3017.8903 17440.1914 36114.7632 42151.5779 16904.3918 16354.4345 13538.8368 20941.0848 23122.8764 7960.0296 63049.3408 354574243 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 792848.5062 5242.3553 46326.1677 4354.1513 651711.8887 3123.3087 6935.3423 9119.1373 21378.9046 214472.0371 11536.8315 14186.9111 25601.432 42430.3958 42430.3958 494460.0667 145566.0409 12993.8668 122019.3271 29561.1372 23658.1396 23717.6977 13420.5708 32087.1319 10355.1383 21095.4996 16629.5167 16175.1878 6753.871 152744.9175 13240.0477 420445.2437 7596.1893 90426241 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 46583.5869 26888.5242 24280.0366 50882.3677 26684.8101 5643.1171 20422.9601 8526.5392 38385.0075 39399.6795 196014.9156 678096.3679 41968.4256 50116.6643 50193.5133 85386.3229 85386.3229 33556.4324 51047.9775 32648.4211 28426.6965 17414.7302 22664.2052 10152.9491 37841.8484 62655.8647 10390.6626 985080.9767 30014.1484 28456.4306 9551.6491 14779.5125 61468.3234 7016.7887 9034.7941 291544608 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 25099.2798 12780.5335 647906.0473 20012.5577 20190.3803 5248.1243 20903.6723 17824.3379 12361.4499 17564.0303 16562.9606 13170.4463 499543.659 24112.3528 26028.6814 15786.4916 11653.9062 11653.9062 14049.6203 32625.4952 27209.2815 198027.4365 25379.013 48290.8562 17158.8351 12094.7645 29469.5964 12292.4564 58686.8375 26261.2255 23192.7759 12411.0546 24346.7688 15854.7457 15369.7924 93263.8444 89512796 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4367.7171 7000.4233 3123.5794 2735.1764 5264.5758 65863.0511 3773.7782 3652.5449 7650.4097 5068.1908 4686.3695 4353.1417 8782.8042 3619.4233 5657.9821 2022.5997 17904.5361 4781.4027 5029.2981 3359.3359 3781.6681 2969.6401 187718435 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 5520.3074 9181.6209 9892.5864 7318.3272 4244.9739 3648.3551 5449.1494 4528.8409 125465.0332 4823.3056 3849.6827 7504.8613 2308.4383 2308.4383 8679.9525 5999.9701 2428.7677 2770.325 8533.7924 4065.3574 10707.9674 19080.7887 6881.0915 5155.952 4605.3514 6417.5161 5328.1525 66801859 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 14411.6518 11951.5601 12970.825 58410.963 42567.438 14470.7282 35574.0981 40192.8545 26710.0486 20794.5859 33570.7428 1431981.1997 27787.3431 34523.7274 75316.2208 36256.7143 36256.7143 8697.0221 103649.4587 66892.4841 7966.4559 28158.0285 15609.9846 8213.9503 25653.6295 24273.9037 114119.9076 57954.6378 25900.1764 61897.6975 20288.6899 14401.5002 27033.0951 8965.0273 13384.5062 256361008 terc Metal Homeostasis Tellurium Detoxification Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 65852.08 27251.6502 7796.7351 14848.2664 40592.4125 23850.9856 44412.8244 8622.6458 11873.5758 31120.8044 1206123.3369 20483.0475 25345.1111 22683.646 10839.9727 10839.9727 29727.0324 47461.0491 59616.1402 18186.1467 53254.4655 29839.3487 18349.4415 11219.8792 14820.3 41973.6901 36428.075 39122.621 53548.2914 11900.2419 10493.9329 15559.5616 9460.2927 25835.9477 153887830 pcag Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 40607.5085 12815.3879 7495.7944 4911.8912 9814.8098 5698.1239 7177.3457 31762.6188 11521.0152 6345.2792 82642.0205 7083.4084 12544.8927 7532.2737 5637.1393 5637.1393 7442.9868 17194.6297 13819.452 20033.7666 15679.3345 13584.7772 4591.8072 15478.5183 10570.4177 12124.1049 28751.9338 6512.6445 10408.3247 11785.9942 8632.8588 7265.3004 5766.8865 10970.4348 154174472 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 10739.7196 8413.3965 25013.7205 13301.0611 7708.1413 21007.6254 6683.0178 13965.6986 15537.5048 16060.9813 162685.3922 11583.6904 25646.5765 25946.5042 15304.7409 15304.7409 18081.3898 23938.2513 12338.7394 7753.6976 13157.3559 13617.01 6441.7367 9456.5073 22302.9061 7477.3478 30564.9024 19919.5606 15899.7268 13547.5959 15263.7479 18955.9361 15074.7947 23446.5435 325949223 ara Carbon Cycling Carbon degradation Hemicellulose Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 63493.994 44064.3493 9716.2415 1531735.409 12747.7328 26349.9545 32636.0153 22132.2371 16382.092 23944.1227 28532.3251 214345.0709 15074.4342 22043.4581 30153.7947 22725.6676 22725.6676 20264.2771 42608.2906 30090.7145 19122.505 35002.829 14693.2356 28579.3432 26774.5378 25688.6658 134334.312 46495.4344 26087.3892 20542.8213 12798.2055 40994.6956 29943.397 23748.7215 15776.241 114541423 phn Organic Remediation Herbicides related compound NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 8293.288 6803.9207 12151.3397 3347.7253 3311.9731 4143.7946 59821.6925 7320.7187 8154.6486 8981.4271 4948.4204 19843.3561 4333.0437 2490.3935 3380.0441 2402.0207 19922.3884 6093.1169 5977.6214 4113.1886 4393.0048 4622.8345 3776043 nitrite_reductase_protist Nitrogen Assimilation NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 21115.0148 11166.8346 23476.94 73862.4963 340927.0033 10316.9995 25707.0846 43133.5256 12573.6264 33630.2775 19061.9913 22893.8785 467554.8913 30459.1148 60117.2364 24292.1435 18517.8285 18517.8285 19481.7335 83154.1178 27959.8034 24294.7561 166548.049 22362.8761 19933.6258 16079.5815 31312.8024 26601.7943 52407.1244 28656.614 34811.7796 24471.3654 19893.7195 30758.0292 17036.9813 71857.1854 359733404 one_ring_12diox Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 15639.8834 6551.4325 33326.746 9973.16 30322.3018 6669.996 8388.8437 22340.2814 141397.9595 81389.7361 9412.1552 15035.0873 13470.3383 30727.3626 30727.3626 5059.5328 22704.5382 5294.131 290474.3249 16081.5627 7710.6544 7830.7176 5429.4572 7493.4971 10740.6143 19879.9785 11580.2196 191921.362 6138.4206 7346.1693 22094.1261 8928.1086 10689.3989 56787881 cmci Organic Remediation Aromatics Other aromatics Novosphingobium resinovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 77382.0824 18151.3143 590218.2258 45716.7633 88615.9973 18508.9882 35487.3679 52410.3089 59180.7515 39402.6266 58364.1925 54522.5649 665488.3837 106783.3341 71271.2819 76111.2358 68769.2281 68769.2281 100348.6915 116018.2322 45138.3897 1199988.9901 45165.4392 80764.9641 60815.2765 91596.0662 53437.6056 39840.9393 139875.6051 85726.6166 52598.889 34397.7478 68831.8236 53368.6404 44553.5693 156454.1481 255519325 nirk Nitrogen Denitrification NA proteobacterium D198b superkingdom:Bacteria;phylum:Proteobacteria; 6688.9988 4789.2621 16864.3741 4034.3025 5230.0069 5062.2956 2788.231 2788.231 24967.3805 3687.1374 7103.6049 5140.0155 2569.0333 17414.4554 22057.7977 6309.875 5593.2557 4498.1683 9922.1258 355540115 tfth Organic Remediation Aromatics Chlorinated aromatics Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 8769.2112 4622.6585 14318.9696 5135.5199 4259.1913 4250.6833 67539.1344 5486.1787 4078.3108 6449.5842 4572.8838 4572.8838 3274.042 7482.346 5170.9662 4693.9462 2269.4416 3193.9618 6897.0871 8705.0785 7345.0673 7167.9796 4069.0864 5862.3419 3507.6862 227467104 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 101555.709 11540.9224 12431.7954 13343.9921 48781.4401 37645.2723 12408.2887 5449.9283 9654.3744 13578.273 9306.9674 267583.2307 19058.0041 16547.4651 11850.5744 10304.0739 10304.0739 57620.7619 23467.2638 14471.2829 7628.628 15198.3657 13769.9473 7460.9477 11901.495 18210.1827 10771.4203 25246.1086 48536.0787 17452.7179 6384.6287 76796.5621 52052.7765 11647.5482 12129.259 296015940 terc Metal Homeostasis Tellurium Detoxification Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 6014.7697 7667.3614 27814.4779 2781.2998 5868.384 32056.8808 5591.0677 48805.0467 2726.0427 87093.9184 5748.4488 6156.8778 5537.3695 2451.334 2451.334 3954.5046 14367.7734 4495.9579 4673.7422 4899.6068 3518.9389 4475.1692 11619.9805 5036.3675 11740.3296 3412.908 3685.1123 3861.4081 3334.1066 7549.5624 159039501 xyla Carbon Cycling Carbon degradation Hemicellulose Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 42467.3617 40366.4164 28727.0894 27364.1554 30010.3257 22675.8977 15241.0817 11825.0827 14488.369 27530.7498 28392.4502 306570.6891 23713.4249 45736.1406 41159.9677 25536.5314 25536.5314 17965.2662 48019.1319 13914.084 25588.4062 83899.239 25051.9531 18345.1139 23849.1483 19155.7634 12947.4812 73127.155 16256.2645 25844.6015 16642.9936 22058.4913 33411.5654 20167.9712 34456.2631 41367208 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 5581.6785 22130.0954 7405.0229 5157.7677 3365.0406 11654.3061 4757.0539 187223.6782 5044.1972 6231.0016 7298.3407 7298.3407 28444.5386 6378.7736 5519.7894 4079.7842 10366.8341 3157.1323 17794.6264 9386.6939 29662.1246 4443.3347 8419.6334 5410.8917 4279.4588 7546.9221 347760651 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 24943.9823 1908054.8964 15275.7203 265738.069 28769.6676 5068.0253 5819.4239 41448.8887 14874.4304 61870.8304 49942.4953 15985.7996 452328.2241 29801.408 8418.1121 11792.4064 14081.8342 14081.8342 67754.6634 190154.4068 12720.8125 8617.3531 74772.535 20770.8149 17101.656 14501.9029 183078.1655 27789.3181 98585.4486 43404.1075 30587.8426 35698.1854 40414.963 52072.4258 174606.1746 16838.9413 359838495 cdh Carbon Cycling Carbon degradation Terpenes Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 7533.4233 16585.9859 11604.1215 2714.2302 5160.0265 3178.3617 3133.51 4626.4502 9557.1069 62453.7958 6399.8697 6638.2447 7223.9334 7223.9334 4600.6508 32747.2411 33538.7336 6779.5096 10053.6324 4857.3305 5405.6984 19118.6044 56869.9337 14036.5576 5699.9643 13009.0542 2600.7469 9915.3286 4537.1783 11111.6288 87285056 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 11549.222 8750.6157 12274.7201 6546.4873 4621.6879 9123.7378 76292.2472 11439.634 149471.5117 16905.7239 9729.5449 9407.6365 6205.3761 6205.3761 8064.8358 16287.0122 13046.5188 10803.3514 17002.369 10425.6446 5819.3685 5677.256 14548.0132 9826.0392 18058.9144 24281.7943 17302.4638 5723.0004 11542.1737 13075.6151 7229.4647 14544.7001 257069054 amyA Carbon Cycling Carbon degradation Starch Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 395003.6876 12470.3539 3999.1018 13567.7006 5887.6737 3835.4988 59071.8307 4837.0357 4342.6341 2446.4417 2446.4417 7102.0638 4950.484 11174.7849 5797.2875 187768.087 2798.7634 7702.6957 3617.3193 8052.0025 11557.4244 3688.8305 3951.0146 2893.6867 359791468 rgh Carbon Cycling Carbon degradation Pectin Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 9396.8607 3767.2216 5044.7586 5097.4951 6389.6196 4686.1788 9424.7763 4486.4899 13325.3701 8205.2822 4756.8971 4756.8971 3553.3351 19060.0001 8211.1364 9031.4417 8094.396 2799.6203 6327.1557 9358.9264 11387.7588 28447.9546 9957.5461 9293.6291 4573.1887 15382.056 10651.7428 4746.1142 8977.9502 311108240 phn Organic Remediation Herbicides related compound NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 23085.0193 71835.7017 24020.5354 7830.0401 18443.8595 34134.5469 41712.4109 9474.7552 19342.4782 18156.7178 144878.8479 7441.0722 118601.6276 15280.0654 10261.9579 10261.9579 5928.4049 22124.9927 11283.264 5556.5305 51628.8883 8309.6561 16711.089 13459.8866 21080.211 13378.2613 56423.1366 32512.9751 42408.7882 12497.5431 23216.3431 14047.5471 9982.2832 16169.0341 353194941 arsc Metal Homeostasis Arsenic Detoxification Halobacterium sp. DL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 77604.2862 74764.3993 14338.8627 27027.7154 31485.1269 501780.2079 108997.8091 39717.1096 55419.5554 58256.096 80395.77 944796.0993 47724.0701 72105.5463 107884.9215 47273.6643 47273.6643 249653.1399 103360.5849 44621.2858 179677.8219 77203.6883 73439.1574 46160.1853 48494.8775 43699.4598 35866.7132 152518.3896 51954.2499 66875.7509 30735.828 62370.6861 66365.2753 48684.3894 80163.7888 294870812 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 38807.6256 15033.9541 54411.5569 48988.6372 27991.8368 24336.3608 58368.8531 24318.9262 34877.5548 27622.1898 38734.5314 14712.5472 795059.7893 32051.1932 23330.0432 23330.0432 27419.5153 35500.4672 44155.9316 45127.1596 15589.352 15805.6635 39720.2433 15264.0762 69212.3373 18253.7207 22766.232 16786.4099 325536517 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 532296.6993 29396.72 6449.5011 7615.1837 5465.9241 48559.1366 23875.9818 16706.9802 36812.5511 46259.0418 47430.7111 443051.2415 52555.3421 32299.2628 45986.9482 35799.6697 35799.6697 16029.2355 64065.4785 114882.4821 30795.7906 43339.3939 12596.183 75941.3171 23876.6054 56293.9826 40923.2089 101632.6745 43925.8403 42726.7027 40794.9774 66329.4812 29240.5573 43286.7863 19094.7365 71908387 xylj Organic Remediation Aromatics BTEX and related aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 12506.4172 55466.8597 5153.9608 17730.8145 31912.4284 10887.3104 48349.7493 591938.9089 11744.359 12182.5343 17111.1367 141717.8263 20138.9833 10493.3329 31271.2575 27911.3824 27911.3824 7925.6889 24855.1377 9868.2275 14441.5924 85460.8039 6150.7882 13759.8894 26679.5232 34022.2823 35221.4671 96343.5914 55344.6695 70707.3562 18837.0183 81923.1388 31659.6281 5824.8921 125954.5932 372267684 arylest Organic Remediation Aromatics Other aromatics Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 197525.772 43636.2534 281379.8096 115770.6538 95388.0838 69670.3729 159930.649 168777.7398 450616.908 95871.8853 161044.2377 107232.0321 1900745.7023 130142.0654 336231.2988 171658.2969 172024.664 172024.664 56201.2024 224138.6985 119776.3689 464656.6145 224735.0693 369304.1203 228234.7903 103254.8656 107186.4447 179513.1865 280045.3586 174058.892 113616.3066 116602.6147 96119.0262 126091.4555 57333.9614 623921.3099 62512284 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 48510.9318 79132.8297 31868.7235 72383.3443 53937.8738 22034.2858 42385.9269 56347.8454 31254.4197 42191.2993 53661.1063 34717.6797 1002874.9488 56535.6021 87016.6125 106862.8784 36615.2997 36615.2997 30513.2987 58190.6194 33611.1233 56861.5469 43856.0239 49672.9712 22680.6366 21609.6257 55068.0175 19883.7026 65633.1767 70120.4897 54783.3889 26052.3632 29320.5425 27240.8599 17176.7495 54423.5577 114540082 tktA Carbon Cycling Carbon fixation Calvin cycle Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 68314.0931 9599.8395 9354.8144 42816.8001 50309.3812 11225.9997 9819.8204 12482.1213 83775.3519 16937.1933 24146.5016 210046.5337 17481.2355 9954.659 21127.9329 19820.6299 19820.6299 56899.5581 24057.8561 15825.6859 13386.2544 20353.1301 5971.1225 8871.6329 11796.5427 21710.4957 14336.9997 108884.1589 15467.6776 53895.673 41726.9039 31079.6348 19016.2333 59995.9314 87368.9879 404255578 chnb Organic Remediation Other Hydrocarbons NA Sphingomonas sp. PAMC 26621 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5249.7619 6156.4272 7459.1352 6855.0008 5503.4018 5209.758 9018.6605 3864.139 164329.9405 7175.0117 8211.5357 14568.3891 2772.3346 2772.3346 5078.9707 11778.8472 10968.7928 10893.1399 15570.2314 7473.4445 6059.822 8492.2712 13137.0163 23250.1186 20950.8 11316.2442 10806.2376 5254.4562 6568.695 7161.895 5908.68 10068.3637 187920811 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 35066.1223 21703.172 134588.5152 54269.9787 4995.2772 15443.1474 24307.6412 10492.1494 16722.9549 27618.8757 67907.813 623263.9766 26989.6446 22216.005 28305.5105 29628.7514 29628.7514 26338.7149 39513.8673 40280.8006 35150.3559 54910.318 31751.8362 18672.1476 21947.9304 55492.1053 22152.7261 66159.0559 43027.6807 34232.5225 19801.9133 24921.5846 28026.8349 19391.4671 37929.3925 363996468 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium abscessus subsp. bolletii BD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 8898.4016 65040.6541 17510.2898 3972.2287 7215.0908 14408.059 8055.9063 91835.3225 8685.2035 5448.9314 5517.8546 5152.9337 5152.9337 41966.7339 6838.8119 3803.9026 10120.5344 9719.4755 10957.7688 12407.8801 8744.9659 2649.0089 14091.0196 5316.6156 14726.8305 6295.5875 3454.7822 12459.7535 8845.9175 5782.1736 238719002 cysJ Sulfur Reduction NA Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 17889.6046 7801.3898 22733.2814 9949.7705 9055.7622 9204.0458 2887.4725 11324.1005 6818.6788 16808.8732 125828.5513 18193.7248 9748.5966 8562.757 20724.5233 20724.5233 7090.1125 37172.4084 11377.3974 13979.5703 13655.4396 12282.3593 5319.652 8133.789 17361.0811 18016.3753 27124.1626 15487.1718 18106.6017 7159.0834 12410.4702 18710.0507 9009.3286 13544.9922 261354019 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 26525.2702 481033.7755 11921.6382 1831.787 3445.8704 3202.6832 266577.6001 15090.5681 6028.6489 6028.6489 6614.7147 5249.1258 4009.3573 8060.1147 7583.4144 6286.9714 2848.0604 3666.5919 3230.3279 24774.2386 296931113 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 5471.5523 7784.9116 4696.4491 4259.2106 4004.3528 3675.5164 4181.7073 28525.5299 119238.4165 4566.4911 4083.2677 4299.0453 3295.8519 9366.932 5550.8945 4185.3002 5014.0049 5398.502 2858.4028 3320.3862 8934.6786 3181.6173 10647.5776 7126.7201 7830.8881 2652.8438 3690.4993 5226.1854 3698.6027 8249.1708 83949587 dehh109 Organic Remediation Chlorinated solvents NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 186485.449 70540.1015 61828.247 192155.4308 451786.7537 28483.9496 46984.8693 89141.5229 565841.2025 57746.1487 144119.835 72195.7263 1245284.5035 45296.696 56445.1969 166776.3467 125723.4647 125723.4647 45433.5621 108119.2513 43511.785 168710.5032 164065.4299 117134.7391 85544.2074 47081.7967 49671.8 142682.8168 239403.4875 117786.6109 83923.1605 29777.1944 78857.2589 102245.7726 50216.4993 144569.7608 163778283 gdh Nitrogen Ammonification NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 11087.2606 10618.351 140793.2268 8770.0026 105856.7505 19418.5679 3084.1779 25478.2828 2851.2491 9778.0423 18982.7559 32702.8809 205353.6041 19702.103 46170.858 29610.2013 20009.4738 20009.4738 10255.2218 20781.2084 21057.668 8424.0485 7218.8936 9312.1148 4422.0656 53731.7673 53309.8038 28582.4524 49463.8341 23016.2894 26021.505 14876.6807 54293.3229 29876.0888 7277.6599 12487.9744 257797260 amyA Carbon Cycling Carbon degradation Starch Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8179.0136 20791.8394 7538.8536 12565.4989 4767.5125 2891.2157 9727.8632 17859.0358 3145.0457 148082.2107 10128.5982 10880.1347 61626.0422 61626.0422 7573.943 13183.8718 10316.9463 7685.2313 14510.4626 9438.7354 4155.0146 3782.682 11534.329 5258.9403 20644.733 11737.7028 11279.6929 5229.9527 8209.3115 5878.8585 4032.6873 12380.7549 88780140 PRI Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7046.6816 15438.0302 4455.3134 2934.4138 5948.1276 4622.3097 8847.2007 3314.5485 115901.6368 6465.6553 7603.5833 4464.8213 4417.3866 4417.3866 5358.3427 12182.4029 5066.5803 8930.0498 7005.9269 6075.0597 2270.351 5469.0783 29065.0422 12258.2945 14050.5432 4772.1336 14982.7561 4468.4899 6191.1105 5384.804 4774.4821 8657.044 359423837 pcpe Organic Remediation Herbicides related compound NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 4144.7344 4167.4947 8329.8763 2174.4366 121547.3878 4923.3506 152056 amie Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5331.4601 12089.8071 8321.2833 5358.8802 3485.9033 3586.5117 5607.8345 4048.8006 101308.5923 6085.0808 7608.8195 5566.1431 3706.8628 3706.8628 3916.0069 12463.8743 8565.7931 6755.2867 9785.1485 11388.8392 3341.2775 4057.514 9503.6818 4804.6189 13564.8015 10108.2014 10839.3258 13535.3733 6043.5666 7748.3245 3464.8743 8700.9989 206566852 nhh Organic Remediation Aromatics Nitoaromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 4248.4669 13062.3886 5299.8202 295414694 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 73908.5433 14078.5961 12195.0772 28847.676 37702.4888 2264.5234 10717.0987 3126.8055 17848.09 24825.7471 44756.0359 135164.5105 14105.5202 10795.0301 37862.3009 17646.6678 17646.6678 16698.406 31421.9655 8986.3257 13899.8449 24502.2862 68581.9 9920.6198 10198.5769 26312.4063 6157.3473 37577.7118 23912.9573 34504.5242 11853.9648 41672.4443 55618.4874 10384.7422 22617.7854 375143306 nitrilase Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4671.5979 8385.8364 3495.2696 61749.4948 2706.9301 66074.4831 5021.6524 4996.5314 5085.4844 8367.4251 3945.7642 8718.437 6443.5313 2488.5011 9990.8515 7815.5939 3853.5868 11362.5781 5188.1538 6647.9684 4827.101 5013.7941 3997.5468 3260.9488 9146.6087 13274586 amyA Carbon Cycling Carbon degradation Starch Pseudomonas sp. KFCC10818 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8424.0795 2339.5603 3524.0087 3427.8715 131552.3498 7456.4363 3103.5567 3103.5567 6671.2913 3452.0815 4610.3125 462939.3158 2107.9273 3534.8682 6284.6225 12820.3031 8354.1911 6530.6447 3765.7438 10505.9253 2145.986 304553679 terc Metal Homeostasis Tellurium Detoxification Bifidobacterium dentium ATCC 27679 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 17690.4209 21936.3281 7727.5528 13317.7543 4064.1862 13346.8186 4841.7753 210232.6036 35125.213 19598.3131 315401.7944 14142.3449 20837.0437 9705.5766 24749.534 24749.534 7097.1824 28483.2991 15941.6088 14169.8869 15994.9303 14671.077 9485.0209 16262.5902 21142.5908 18981.092 35745.5315 23527.9635 22354.2275 10347.2825 20380.5593 21325.9422 20911.0357 18322.4105 254450778 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 6654.7305 5282.0533 6873.4883 4280.4573 5409.9067 4338.9522 12631.59 12631.59 4747.6594 18473.0266 17497.4578 8567.1837 246001.4985 1794.6178 2446.3976 2301.3401 308227260 amyA Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 27968.9746 159590.3331 27615.7206 123962.7726 28074.8454 19851.8055 28437.0615 13335.0012 41282.1651 29236.84 84900.9053 492101.1188 41291.9349 25213.068 29962.8551 205494.386 205494.386 25529.0066 51310.1403 32052.5581 25916.7731 50505.6768 34482.5469 24616.1542 21799.8199 59778.483 28279.4796 507823.7344 66439.413 47149.7027 22585.9941 23591.7543 22420.2086 14874.9469 36757.5955 158317443 urec Nitrogen Ammonification NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 58657.7044 115207.1828 65787.2889 28668.969 61517.1946 216803.0296 56947.7638 42242.5417 76423.5773 55307.522 109723.9667 1023669.5502 132351.4303 51311.8512 71525.0619 93829.4306 93829.4306 125775.45 88650.6904 46832.4143 81640.8856 77408.444 118815.3723 32216.8841 44696.3583 91921.7236 37420.812 140865.4548 81457.945 151831.9252 29935.3685 48987.046 76748.2558 40051.5856 76330.2612 71067032 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 31176.6602 6491.815 19522.9673 38327.496 13283.8532 34924.6727 9922.7352 5810.9455 9940.1869 17259.5251 8877.737 242035.7317 22779.2088 12797.2392 11090.1856 11596.6194 11596.6194 9777.5105 28020.6559 17033.1572 10359.5428 29050.4342 14900.2786 7034.8517 9454.1804 25875.6035 11921.031 31424.1562 20985.7033 25538.5467 10964.3413 9738.6129 8087.223 6038.4135 18399.2384 256783677 amyA Carbon Cycling Carbon degradation Starch Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 14781.7474 13727.7567 7266.4094 7747.4533 10649.8338 9409.7555 6055.2437 4162.8898 8343.4151 8580.2241 4202.9502 315409.8289 12700.0949 10993.0728 5658.4091 4081.3123 4081.3123 6551.4085 13010.7008 8290.1538 9776.9514 13333.2184 17165.7988 6623.6113 5660.9985 15100.915 5926.8475 20137.0555 4487.5737 12686.0591 6204.8177 6264.939 7330.7777 22871.4626 15276.1656 217504384 mer Metal Homeostasis Mercury Detoxification Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 87956.8547 68428.9175 86733.313 165099.6542 989924.3131 108479.3585 90650.8494 91205.7511 62364.3721 67766.389 84440.3708 60429.6736 8414028.2196 86099.662 120561.2604 130589.8141 78323.8077 78323.8077 54375.593 72756.7735 48463.3997 137205.2593 82903.7284 113636.0127 29136.8247 47468.9356 79551.9116 48107.0972 134588.183 90259.8882 103838.5097 45801.2404 38580.5235 61588.7214 43939.9503 95886.5597 320091793 rubisco Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium BW-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 85663.4363 36088.5782 87346.8293 34023.4488 29478.9802 97540.5839 52633.9108 59839.0484 64627.7636 96742.7566 49415.3214 36451.3013 1516090.4986 50579.6248 184293.8471 77032.4914 57535.8331 57535.8331 46283.1089 88929.3617 55455.7302 68033.0556 84181.5689 87113.2222 45666.1183 42874.6836 57125.2323 46965.9094 149357.314 99631.9149 76455.9098 39342.1453 49709.8652 69914.1607 51047.2586 83993.2138 163742110 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 76606.5439 40516.9592 92409.143 75262.7241 34012.1836 25706.5528 41414.8715 25081.5988 95067.2658 49219.5672 77745.8918 510721.2213 44588.1407 71094.5522 34191.0391 38471.8208 38471.8208 55844.078 67987.6637 22108.9377 75222.6924 93070.3062 175004.7565 29919.2332 80490.1518 47678.2305 59649.5511 134295.492 38425.7836 68043.8781 12252.6062 46678.0902 85072.6911 17728.5466 50909.9903 167625451 cysJ Sulfur Reduction NA Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 6850.5546 3163.0889 4037.2953 2482.7911 5379.2917 78253.0121 4473.9844 3468.6784 7613.5083 7428.0214 6550.3348 6551.5162 6350.9066 3019.0408 3434.2142 7472.0762 3581.5618 13711.6097 8840.2341 8508.1355 3718.8572 4364.9453 4758.0002 2606.9651 8918.04 121707561 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5683.391 3711.0331 2224.6849 7152.2974 2753.0194 62477.084 5534.8756 4687.6722 3394.3841 3394.3841 3735.4069 4577.3054 3263.54 2545.5091 5728.5921 3105.9511 7456.0747 5388.7012 5368.9785 1603.7729 332377334 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6723.43 4420.7774 10197.6521 4813.7897 5198.2496 9605.5765 13887.2436 3425.9722 111544.978 12449.4015 5784.5473 6244.0826 4049.2873 4049.2873 3846.2914 16802.9726 11240.47 12838.1027 9595.8416 6709.2923 4321.2183 4486.4414 16481.8891 3764.2402 17010.4954 6678.5561 15560.6255 4188.5416 6815.0709 5272.7638 3947.1169 9429.1722 296164876 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 229181.0624 269854.1509 25816.6366 10879.2383 442781.0957 20363.87 27493.1841 61643.9704 21130.6149 75363.0871 41206.7734 47627.7539 894526.4868 33395.0988 106112.8483 58630.3287 78782.9233 78782.9233 45424.4002 164109.8312 28801.3413 853121.0517 115391.2403 31071.1272 29290.7769 22508.5716 82932.7086 231611.9174 276927.1638 47282.8836 54368.1929 21729.2618 64485.7019 62960.7211 39263.3292 32455.9057 158109431 alkb Organic Remediation Other Hydrocarbons NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 163241.8765 55010.2347 120618.001 85584.1553 99033.6131 28287.4303 167135.76 111757.1694 112985.3307 91756.3158 74387.5666 64897.6203 6135886.1817 120656.3135 83116.398 140533.3057 92435.3082 92435.3082 90188.3247 116315.721 102020.4823 60157.5125 141045.3382 148611.6081 61615.0285 70742.1783 143343.687 131773.7992 165627.405 144659.0742 196740.0849 59041.8524 88787.3901 93936.3459 57749.7788 97180.9026 55791916 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9742.894 6966.1244 10315.925 8015.2428 13688.2423 12520.1752 16368.1929 14741.0475 110733.4083 20254.9544 14254.3179 171674.446 10032.1194 10032.1194 4364.8617 28663.3268 35668.6704 41307.9032 5868.5856 259762.2602 10551.6317 9107.2777 20992.4448 10905.6784 223353.7432 9654.0182 19671.1747 4583.6619 20294.8786 18426.8621 51010.3556 80510.192 124363917 mcra Carbon Cycling Methane Methanogenesis Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 14485.6532 8858.5488 34807.7381 7997.2028 17940.059 7567.6645 52667.5016 12965.1726 10628.834 44800.7198 6303.2208 260182.133 14103.4145 16324.9595 9537.6092 6242.3604 6242.3604 63555.7744 18496.1488 17703.3407 20058.5381 19145.2196 22374.5266 7667.998 7796.2205 15457.7403 5532.2685 30781.0585 15204.2738 18483.2748 12292.9582 9426.0603 61084.2852 13259.7782 22817.7324 149783645 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23549.579 7946.6711 17134.6645 11672.192 41772.2053 5904.4491 12705.8154 7909.3674 9160.2741 29522.1702 10271.9648 323464.9479 9285.7661 33230.7204 27155.0717 7678.3552 7678.3552 8234.5707 27806.4744 14270.9461 32619.3605 15111.1997 11730.5024 10288.832 62025.6389 14473.6818 8089.8131 39032.3331 11836.7659 23315.8066 18321.1832 9874.9989 9588.9127 11732.6161 18504.3169 338166071 xylj Organic Remediation Aromatics BTEX and related aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7769.6198 35154.5364 3230.9589 4809.1637 5958.6712 15454.895 158965.5952 5781.8227 8118.1827 7096.6146 2996.5249 2996.5249 3392.4778 5552.8845 7386.7888 7604.541 4535.4304 6047.1865 3702.9756 10708.3478 30664.5518 38845.0694 9389.1228 10129.0439 4077.533 5953.0064 5165.6163 6122.2431 15467.832 373248960 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5953.0686 10263.6448 5960.6931 19103.8679 12863.8689 3496.1464 9456.8947 2598.4633 6639.9972 21066.5089 7052.3877 287356.9222 10035.551 12452.7876 13783.974 9315.6659 9315.6659 3437.7286 7020.4644 7603.7004 4630.2661 21010.9465 11496.1816 3829.0426 6946.6386 13216.1481 6008.9313 23910.4283 17171.2576 15752.0723 3218.9915 10627.6351 9558.6415 8657.2683 114193725 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 4893.035 6077.3026 4034.7725 2185.2614 4508.8842 3512.1057 3730.3183 6524.6478 74564.6233 5492.2024 3805.6732 7270.7798 3409.3058 9943.9001 5397.6607 4827.4509 5669.1823 4654.1243 2765.2637 3555.5149 5250.1974 4006.9396 11362.0585 3790.2326 6311.8057 4562.4078 3280.6299 3868.8172 2720.8953 5413.2732 228876528 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 5101.7147 4008.1303 3605.106 7154.9457 10866.3719 7364.4936 4006.2427 55467.6944 5387.5843 7330.8642 2833.8391 2833.8391 5099.1453 11138.9879 6558.392 12611.7542 18982.0207 7443.5049 7465.7221 4006.5056 10722.5397 5861.0105 22188.643 5032.2336 16492.6068 6328.4631 7222.529 6551.2274 7006.1341 5550.7564 159041230 cellobiase Carbon Cycling Carbon degradation Cellulose Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 18057.6948 14562.0284 10883.169 40488.2282 14878.7467 18203.0127 15019.4059 9573.4886 18172.4132 16555.3966 11204.2885 530335.1707 24390.7125 19099.3409 29358.8162 14245.454 14245.454 12529.4945 28266.3267 19064.5006 16438.3686 31149.032 22122.9105 8856.6433 8022.4071 23712.6244 19503.8973 33476.6344 27484.2958 24155.27 12248.8718 12563.9194 15935.39 16008.9476 24861.1638 262380124 xylg Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 8677.4257 3919.402 8509.2357 3337.0763 3337.0763 4580.6576 5116.1782 2287.0947 340029145 PRI Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 53749.7901 9850.4825 5209.4982 2744.2261 26360.5548 12417.4749 18690.4193 7990.4105 59905.6472 376444.991 15613.4028 35305.0528 51235.0009 16593.4854 16593.4854 5489.0287 20968.2542 6423.3521 14076.6545 9963.1071 4362.5305 3750.3649 7715.9745 12337.386 11083.2177 21636.7748 30475.3638 10436.7716 21091.6154 21003.8182 41869.2404 5591.158 21018.4477 290890884 amyA Carbon Cycling Carbon degradation Starch Oenococcus oeni AWRIB429 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 11205.8968 6283.9209 25896.651 13133.038 6131.8284 4039.1787 19424.4738 3945.2395 12227.5481 33727.0302 7218.3714 204384.9701 15492.5375 11452.0431 31739.6822 6286.0459 6286.0459 13480.5571 23973.1217 20080.2014 9781.0241 11374.2623 18390.9776 9490.0476 21550.1345 16206.8603 7238.554 21218.2453 13698.3643 24303.5374 14002.7688 39034.5673 10202.5784 7096.4418 12029.9226 13470718 terc Metal Homeostasis Tellurium Detoxification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 41386.1725 18397.1582 9710.4412 25527.8711 19300.8276 17717.2632 5912.2342 21916.9977 26352.0261 26378.2955 477512.1168 9381.8747 51422.3517 61280.4964 28675.7051 28675.7051 6931.8472 17574.8654 10721.7493 10296.3943 38617.6999 9228.503 10271.5978 14624.9277 18380.983 24386.1483 22127.909 34808.6067 19015.4599 8838.6815 15628.4589 8340.5007 9014.8784 8040.6819 348617647 TIM Carbon Cycling Carbon fixation Calvin cycle Candidatus Glomeribacter gigasporarum BEG34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 5392.8837 3594.2623 7869.8879 8333.1407 104304159 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 41467.4663 8205.9655 2402.814 4790.4128 2410.6505 4774.3126 5581.2942 65495.9034 5529.3391 4544.6831 2042.2041 2042.2041 3187.3991 7218.6681 7851.2 5780.1573 5573.8533 6790.5402 3714.3339 3633.019 7837.1864 2903.7223 13378.897 9023.836 10093.2921 3074.2432 5263.9282 5295.5984 3592.3123 6103.2701 196189776 pula Carbon Cycling Carbon degradation Starch Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 20407.1828 51674.0233 8409.8528 6336.5415 13027.004 15450.8252 6295.698 148998.5044 16177.0713 18441.261 1121792.53 20313.2305 22752.6338 9624.8905 9126.0424 9126.0424 8297.7469 27318.9107 13584.496 17885.2287 269098.0208 29871.0873 12664.8684 10206.5922 24249.9955 10390.923 54313.1914 13257.9987 22052.3198 6963.1649 12382.8429 17449.7978 11846.4496 14394.982 335881555 FBPase Carbon Cycling Carbon fixation Calvin cycle Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 10613.8197 2612.1738 3046.4981 3909.3325 4911.5948 9918.5126 209525361 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 6987.403 5925.7385 4509.5733 3760.9525 5299.2734 5721.2152 3226.9306 3197.7017 3239338.6684 3702.3297 4050.0513 3247.617 3247.617 3293.4929 5768.4881 6048.6648 5603.8298 5896.919 3641.6879 2568.2195 3128.1546 7401.1319 2637.3653 10238.6604 5037.4947 7787.1854 3307.0373 14671.3907 4461.9191 2829.6846 169793450 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9288.4535 5516.7997 3958.4659 4983.1234 8950.0544 9010.9404 4812.2412 114301.5401 11889.9581 9523.9866 2866.6987 2866.6987 5837.4049 8730.6501 7578.3375 5222.0016 11081.326 8921.9269 3586.3504 4242.2885 12273.8606 5926.1468 14950.1049 8407.3311 7545.0168 4490.4253 6758.8867 9438.5436 4146.2154 10602.0461 161385726 nhh Organic Remediation Aromatics Nitoaromatics Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 11553.7297 29933.3018 11152.279 78233.6408 8067.9557 7732.74 4449.52 11301.3088 3541.835 5542.8949 10429.4927 7019.0953 158802.9147 16701.8623 8811.6807 5927.4793 5927.4793 5169.7532 14768.0022 8197.193 7488.2434 18712.9555 19252.8986 7101.0682 5716.333 10142.3379 9124.4969 24864.3517 13297.3349 12374.1852 10504.9789 7863.1861 9481.3016 9114.0871 10539.078 328934495 cysI Sulfur Other NA Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 10900.6398 13484.3395 2818.4583 9061.4357 6011.3991 5070.6558 9407.1888 8466.673 119406.9321 6177.9643 4439.674 5950.2159 4681.9895 4681.9895 4428.5054 17685.836 6126.0489 8263.458 8114.0118 10745.846 3366.5086 6124.2611 13106.2969 4010.3486 41687.1688 6796.9039 11867.4119 6547.9397 5206.7597 9966.0688 4401.6513 10731.7983 389877872 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 81451.64 58004.17 300877.679 107899.3522 68510.2057 26641.7108 67250.7389 61373.9933 53335.016 110432.2339 76016.0407 57295.3896 1591993.7292 80178.6263 74311.4146 113484.4146 94197.2505 94197.2505 484570.9958 71262.8387 58879.8482 87309.5164 77823.6045 116535.3888 43814.3504 42144.8574 106507.0727 43142.1649 156836.8057 86195.3606 101702.5031 34684.3017 46518.6871 49437.2059 51652.6288 166606.1413 247543429 cysJ Sulfur Reduction NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 66680.018 12304.2696 46722.5326 44507.5823 15627.9072 6457.569 23153.2759 71444.7141 10906.312 47476.9766 21385.5812 14924.781 1416299.1908 14199.1164 50415.4202 166547.4295 14391.6854 14391.6854 55271.0376 49037.2048 78454.7117 13830.1559 30761.2438 23529.1627 14283.5263 16780.8301 19697.4405 88258.6974 87059.7747 140239.6452 24199.3076 23271.1084 19425.1231 34735.7804 21142.5 116748.877 12667562 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr826-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9627.4253 9103.9799 15821.2434 8298.7153 6519.4398 4206.4747 2622.7736 7143.7144 11990.3618 5519.1799 175925.4242 9254.6725 7792.3644 8078.0929 2809.9755 2809.9755 8991.9022 13715.5601 9999.6777 7553.6103 12009.6136 8974.0072 4464.3588 4445.0884 10941.127 4183.3328 18216.4882 9732.5716 10495.4872 8991.8996 7663.0954 5665.667 4819.6769 13009.138 303328517 ppx Phosphorus Polyphosphate degradation NA Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5234.7491 19056.5184 10067.489 120190.8011 12968.3948 8851.1106 37609.2106 7600.318 10099.8379 6371.2465 306123.5082 12894.2336 12589.1794 17929.9084 13030.2251 13030.2251 4800.8061 27007.1834 15635.7162 9630.8515 3203.1955 12785.5209 29828.6272 7201.9114 32832.2963 31875.6796 26738.6974 12082.2963 10777.593 12485.9187 5003.478 374422176 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14429.8553 6320.4225 9638.5211 13595.2954 5726.8253 14690.0614 8347.3938 4449.7558 8076.5098 10874.4853 19586.665 208112.4211 12134.7105 9648.2409 8640.9574 8660.4071 8660.4071 9168.4733 18239.3337 16758.4881 11360.5571 16300.4351 11880.3156 5953.5661 7441.7038 15634.7093 7061.8377 61359.5246 15478.9995 16774.394 7271.6074 7816.1869 13714.4322 7501.7584 16799.5636 86357129 ppk Phosphorus Polyphosphate synthesis NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 15930.2205 4257.817 16649.5017 7437.6694 12635.8332 9890.4389 2641.1812 7874.0263 12018.5028 8211.435 123434.5463 6152.1942 24037.1406 15857.8193 11939.513 11939.513 5776.1685 13942.7412 16330.1368 7703.8664 17642.1137 6605.4251 4863.8388 9455.9507 12523.2324 6061.0564 31680.2676 13203.7038 14091.2108 4703.6885 14852.5243 11356.0793 48948.5263 9482.9241 224027967 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4025.2519 22747.7335 3537.5554 1868.3853 1868.3853 5339.6079 8872.5739 9877.6419 2120.5124 6443.7536 2868.945 10237.0651 5455.2047 1829.7796 4767.0074 2485.1799 6351.7046 21224837 narg Nitrogen Denitrification NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 132511.64 20173.6502 24723.0172 64594.758 55548.0962 81940.1785 111440.0269 96930.098 54657.8259 105792.2327 58948.6375 66542.9411 2417931.566 144002.4525 110390.8317 332708.9532 71760.7048 71760.7048 48767.7021 119947.2403 50409.0365 78252.0827 232259.9822 310826.8392 86796.9707 66886.7395 63690.8447 44631.3095 171379.1398 96254.7154 183051.0431 46619.8404 58446.8303 96116.3158 58044.6762 133932.798 305127870 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 8107.491 5957.0073 8498.8068 5343.1357 4715.7144 2899.2755 5846.3608 8084.2442 4576.6725 179183.6841 8322.3341 6886.0122 3546.3885 3546.3885 6273.828 11195.5315 11730.2761 7269.1507 16049.7397 13966.7868 4762.5609 4024.6649 11379.2383 3744.0533 18836.7323 9822.1741 14685.9157 4702.4904 7063.197 6350.8631 4315.3793 16406.0485 192764476 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 47695.1291 4827.4218 7545.6977 13631.315 6197.8653 3485.9248 7984.444 8234.987 18180.831 33430.0642 52997.9406 268633.3661 14533.7232 11315.9448 54507.4252 11517.1884 11517.1884 22894.3845 17293.0648 11885.651 6612.0611 16281.2248 6763.7772 4784.8478 13363.4363 33443.9038 15098.367 109823.9002 27117.3182 14196.3728 16441.9034 23188.3526 33342.7323 7542.0655 9136.5737 377573912 amyA Carbon Cycling Carbon degradation Starch Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 49865.9421 18764.099 6495.4081 9492.0074 27338.4688 11628.9902 26145.9189 12206.9485 14017.1232 16332.6969 340197.5007 10983.5583 25799.4162 15471.8196 15520.3576 15520.3576 18379.8149 30188.1187 13408.9971 14969.9848 21289.6497 15779.8861 7690.9653 10547.8212 20796.4312 13696.8238 34694.2772 23129.9091 29203.6321 7264.9828 12579.0292 21116.8915 10166.3441 44873.1591 345446148 amyA Carbon Cycling Carbon degradation Starch Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 7168.0195 9720.3783 2599.9178 4213.2651 3587.8308 24189.5007 2566.4108 65151.3045 9099.4773 3965.7184 6353.2973 6353.2973 4336.3787 9859.9784 7791.3623 9784.9946 6205.8589 6011.7093 3991.0934 3542.7086 6761.2053 2355.4755 12761.0956 5734.3858 9120.0252 2390.177 5316.8546 5192.9305 4368.405 6898.6861 27381270 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 17771.8817 10107.0753 11728.8689 8503.7214 12653.7195 6236.8969 8948.0845 8257.8391 13216.2958 9823.1171 196883.4519 15718.833 17420.1056 11515.768 7290.1892 7290.1892 12233.2365 21729.3351 9925.6857 12028.1931 16461.1113 17499.2709 11527.6107 8652.3543 11902.6254 6229.1038 26469.5971 8055.6857 14817.9747 4414.0744 8788.5909 28639.2607 6781.3841 15469.9732 90424396 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11384.9943 3082.5316 2357.1111 4154.1973 7808.8953 4039.7898 96509.1247 7240.6599 4410.2887 10438.5463 2890.3705 2890.3705 4175.8528 7212.462 8331.7981 7453.8487 5212.7004 6821.094 4014.04 3167.7417 6762.781 3576.8135 11891.051 19184.1837 8257.4934 4257.6551 3252.6954 2961.4344 8956.3047 407696308 chnd Organic Remediation Other Hydrocarbons NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 236976.9598 4183.6614 14413.4372 6406.2283 6693.5203 37140.7561 5514.674 7228.2172 299734.2487 9021.3229 88568.6754 7257.6432 7357.0272 26098.7882 4304.0784 4304.0784 2488.7107 4331.9753 6186.9517 6218.3376 10063.2329 8831.0142 41119.5876 6245.0393 10275.8339 3482.1741 4990.2979 3390.6285 2074.7547 4192.0861 358754512 arylest Organic Remediation Aromatics Other aromatics Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 8187.1283 5368.0181 7736.0608 5666.5324 3951.4583 10104.6159 6582.6577 3810.2225 114410.774 8547.7583 7862.4802 4574.8119 4084.4149 4084.4149 5398.0733 14380.4405 9270.7518 9139.4282 7838.3226 5017.6168 3530.1438 7326.366 12839.0454 6634.5006 19736.4862 4925.8055 9810.2205 6004.6366 6241.576 6895.7145 4509.2634 9296.6558 377521449 merb Metal Homeostasis Mercury Detoxification Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 7478.7111 6950.3839 3546.5718 2874.327 2154.9701 11036.4858 5098.4766 9443.4275 455572.8162 4566.3794 6432.1266 5021.4658 4127.7593 4127.7593 14338.7633 8623.6189 3185.7969 4693.9032 12089.241 6967.6193 15381.2224 16141.3329 8659.2801 6305.2663 8362.9643 3710.7014 23908.4012 169786817 merb Metal Homeostasis Mercury Detoxification Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 5521.1995 33680.5746 3494.9386 5731.2165 5195.2387 6622.9978 2584.5668 74222.025 3910.9321 3725.4935 2675.0561 2675.0561 20616.8463 9154.463 42972.7161 8660.6269 6087.7635 430335.7889 49343.7526 5100.2054 22029.3342 3365.1558 14397.5775 9908.0661 10663.6173 52527.554 4620.7569 5912.2605 6615.6589 50133.6331 359770661 cysJ Sulfur Reduction NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 5805.9881 11771.4185 2314.4671 8569.9878 3909.3367 3919.7418 3905.601 13919.1999 8659.5569 8659.5569 3482.8528 6735.1876 4752.0285 5455.5474 3105.6541 2935.7678 7721.9808 7708.6451 8527.6158 7209.6026 2512.6978 3110.3981 5159.1636 2024.8442 8121.1912 83954851 SoxB Sulfur Sulfur Oxidation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 15038.2503 22055.9603 6349.7485 11183.2662 6419.3083 3790.4158 9426.6395 12205.0226 6730.2284 180932.5711 9833.7208 14039.1764 9453.9907 6710.6104 6710.6104 8428.4918 17059.644 12074.3227 16621.1248 17625.9958 16975.872 6069.8801 8795.588 17732.5824 5154.1791 28107.2318 11527.582 12956.0943 6205.84 9008.5725 10849.3377 5908.9248 19509.4755 371764379 terc Metal Homeostasis Tellurium Detoxification Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 15629.5436 18907.7486 8887.5719 17112.5214 6635.1461 8112.3988 5461.5671 10950.3399 46921.7732 97216.4652 441040.0112 19174.7 13964.8124 19978.2961 11386.4356 11386.4356 8474.8458 20387.5188 27741.2069 7238.155 18687.2759 17851.6134 5980.0714 11629.4341 26629.1443 6883.746 27612.8851 24956.1866 37174.2639 8300.9877 41797.1663 10415.0588 25151.8566 16633.6634 240102660 apu Carbon Cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 7905.8258 8932.7328 13956.9335 6436.0799 5007.8292 10445.5455 4303.139 4084.3896 4474.9129 3344.7888 148471.212 6919.1492 5492.5427 4099.4501 3227.4718 3227.4718 6588.9858 8721.3405 8484.66 6420.174 6177.3615 7421.002 3175.635 3767.8683 11389.861 4190.1753 13729.8191 4643.3264 10423.3006 5002.1976 5960.0798 13147.1369 4457.3896 9877.7308 357394292 endoglucanase Carbon Cycling Carbon degradation Cellulose Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 7967.3778 5812.4723 7663.2042 3039.4617 3876.5375 3560.3856 4987.1962 14719.5265 28507.1109 10468.6643 10468.6643 6335.3584 11582.2666 5844.1891 5061.1623 3813.8297 7834.0298 2825.6426 4768.3465 5732.9219 2697.8455 2994.9482 6353.1053 2738.1365 254515804 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5852.614 8472.778 24496.8417 19247.3659 21130.0561 3421.2949 4750.2763 41609.7709 14333.0541 145271.1668 27197.1586 6567.0124 5660.8401 30442.9132 30442.9132 6192.9137 21277.6488 127592.5468 12888.1563 18658.3242 9216.2324 5865.2048 12990.1654 12207.3751 16188.3962 24619.4935 10856.6785 9163.6426 8619.434 8870.3118 10337.9674 13783.5615 6491.3531 189210435 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 12536.7361 5800.13 10180.9851 3216.012 2311.3048 7265.2455 4743.2412 11636.2749 13517.9001 214711.5179 9599.0202 8900.8066 81806.9683 81806.9683 11793.6911 9067.7573 6293.9718 5553.5776 22788.7188 8430.7513 3716.4834 15856.5919 64228.8721 3956.5293 13428.2364 10875.6109 10886.5293 3771.9302 5426.5858 5534.9907 6165.6707 7696.4167 294884077 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto195_4W superkingdom:Bacteria; 5761.6721 9935.5807 2876.9063 3422.1376 54196.1422 4508.8497 19344.9965 3146.4313 3146.4313 3154.1794 4375.1149 3840.3557 2808.3684 5320.1618 6975.4856 2997.4002 3059.4009 3627.1605 3576.2216 5495.5114 156932744 cysJ Sulfur Reduction NA Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 14472.3043 9342.7368 11348.8223 19937.8194 6531.8527 8224.6019 8156.6358 7323.8818 10304.0766 27008.3538 6273.3861 553243.1467 10576.4674 15153.5961 30299.2148 8774.4171 8774.4171 11392.8398 15795.9844 9501.8459 17285.2339 13251.8556 24635.9428 7848.5561 8590.313 18892.2635 7346.0057 48614.9341 10861.7723 18767.2447 7450.3231 10180.8359 13771.7277 6692.4643 32775.3987 284017358 xylanase Carbon Cycling Carbon degradation Hemicellulose Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 27354.0157 11566.395 67436.1009 9465.9004 20225.9445 18549.4631 5539.9133 8963.5948 20034.509 15192.8277 378785.8999 16884.2003 21190.9267 15467.9402 11883.6765 11883.6765 25764.3118 25741.4292 20864.7861 44987.7037 47637.8856 16537.1991 24617.0349 15743.4665 25431.8613 18823.4734 80830.0097 32657.8628 33459.658 10701.2142 18236.2087 25188.1806 11398.5981 41273.7126 356687001 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida 01-B526 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 40704.1481 8468.8116 4398.1016 3001.6364 134017.4526 9019.6639 68898.5855 287638.1491 2462.3447 2462.3447 5990.268 3591.4355 7646.5742 3302.1478 2451.3087 7226.2787 2197.414 13794.4743 3469.6725 5879.9846 2363.0796 5558.9403 2847.6754 5865.3329 13320.3733 261368318 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 4421.6081 5689.5898 91855.7873 7624.8234 81176591 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12129.281 8289.8248 5384.0724 5843.5904 6214.9119 20941.9529 8529.5666 22689.4387 10062.3528 260064.8887 18589.477 10508.4604 10174.7159 8185.9721 8185.9721 7488.9412 22658.5853 10575.717 18535.2592 14572.1355 8755.6766 11857.8341 12933.0652 17264.823 17490.3739 23977.8343 21606.5546 15375.6987 10718.49 6925.7174 11448.8292 6301.4565 17507.9862 337273302 nifh Nitrogen Nitrogen fixation NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 10152.8068 64046.196 7014.1649 6413.7037 6335.6041 12614.4635 17219.0943 29745.2289 204252.9224 9873.8486 7302.5552 8295.3444 4851.1399 4851.1399 5046.9563 21562.9823 10134.199 9807.5732 8943.9563 14557.4141 5056.665 7606.9372 12823.9524 6184.0166 18422.2346 3910.7821 11227.8004 4992.0317 14397.1121 10617.9602 7118.8701 13477.0549 282571979 dsra Sulfur sulfite reduction NA Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 11671.3404 6277.9607 18152.0405 5941.5485 8823.2278 20892.5737 17659.8999 16554.5955 17918.2099 273871.011 13562.8103 13393.9519 21752.56 8540.2054 8540.2054 4148.8689 16391.2874 7130.3731 62252.3139 16616.9336 17444.0744 5176.8516 9537.0676 13150.0185 10393.2343 32086.3776 12108.3189 17879.3557 6015.1028 15811.088 8719.7795 16262.0688 5688.8715 291296492 ben_bcla virulence NA NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 13076.3261 7913.8769 15196.4277 6931.6375 7430.6333 2857.3569 10027.2034 11368.5198 4729.941 177172.0317 22123.3127 12955.6649 9426.1957 7383.7973 7383.7973 8186.3496 17845.4362 14366.0672 14038.7966 13318.2828 16779.0237 27644.0883 7002.1137 16856.8922 6947.5636 25188.3249 15038.584 15139.7257 6027.1097 9509.0105 13829.2863 6191.889 12267.1062 73762956 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12300.2182 4386.1658 4207.2664 2284.9877 3489.8891 3307.1123 5659.5079 10571.2658 3984.574 6368.051 6781.2299 6781.2299 12580.6258 5062.7332 10278.5775 7624.1041 9366.3713 5623.9521 3333.6692 6589.057 3150.3434 14419.0315 6765.8218 8171.0422 3386.3613 3936.1851 2429.894 119374201 tktA Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 69679.6326 15412.646 27995.4454 41918.6341 25729.2306 11297.7417 12737.091 14125.1523 18634.3737 32305.1823 349397.5865 18547.3145 17312.485 9427.2621 18206.3967 18206.3967 18722.3567 29014.3588 35934.3552 15095.3204 35691.8751 26344.6743 15529.7225 33346.9957 27371.7678 32692.0842 47155.8043 21059.6662 26197.3901 13049.1287 16926.515 26127.2034 11796.7673 25352.1597 73763046 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20864.8866 107715.1719 27994.2077 35382.3542 28706.2111 11435.5168 16472.8941 8462.1948 35602.2284 74710.9708 17680.8702 490972.789 36918.7472 34757.1746 44796.2927 24333.3118 24333.3118 13179.586 17436.4152 14319.5961 19120.7895 21557.205 19907.2554 20091.1176 12485.18 37664.9442 16843.4107 44350.4703 35614.3428 29832.0609 11452.104 17931.4343 15649.8868 12489.8107 9261.6544 256356849 limeh Carbon Cycling Carbon degradation Terpenes Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 61248.5008 731299.6054 189971.071 15642.7862 29657.3251 8347.3707 6826.7809 14000.5809 14968.8373 17169.1861 134848.7291 11991.9555 99386.1269 131347.9169 11659.1651 11659.1651 13480.6304 24369.2517 12900.552 40847.7532 275967.2859 32929.2767 13710.0813 21539.892 53359.0117 41130.1331 32620.8155 24521.7378 28392.0813 10328.3687 30905.6661 21175.1648 68268.1085 62875.1408 214028805 phn Organic Remediation Herbicides related compound NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 10366.0679 12609.2337 179330.4513 25265.3557 4457.5426 55054.6584 7711.8247 13060.1656 11525.5366 28171.3059 795250.9868 29263.5642 33251.5861 70361.3736 49773.4708 49773.4708 9595.3537 59486.5406 21553.8397 19697.8706 20766.0051 39495.8103 9924.893 27458.5053 42678.1285 11391.0093 37984.5875 39409.9822 72457.0097 12202.1881 13823.5965 28774.9947 7771.471 7979.1006 353192324 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4817.5468 8792.0348 5254.3517 5254.3517 4529.2383 2663.7706 6220.0025 2024.623 5823.8595 4254.3651 5552.556 84778347 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11346.7814 2040.9463 2040.9463 283812128 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9083.3575 8816.1409 7545.2233 20287.3446 6927.1952 9750.3596 6364.6202 9423.5671 11429.8824 5387.4432 163393.5542 10072.9781 6292.3404 6655.1012 14594.5212 14594.5212 5758.6796 13861.0819 10328.1328 14416.5773 37742.5843 33936.2367 10343.7084 6453.7273 10971.2289 7678.2988 24565.3432 12598.3742 11189.7765 7780.9409 8472.2191 13497.9147 7257.5673 38239.6921 40742515 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 52841.0168 54619.5632 30701.2167 52769.8771 21138.3225 87206.6098 78504.1208 20878.1016 26139.4797 39932.3613 39927.4174 433507.1619 71452.4412 69742.7146 121298.6367 41424.1565 41424.1565 58580.8413 68719.8647 207820.9171 66424.3346 160911.2288 51904.3184 38824.0503 65010.9533 100440.9979 69204.3542 127485.2713 52535.8927 129906.254 22456.6803 39868.648 123470.0833 38848.7666 89317.9441 299063950 cysJ Sulfur Reduction NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 59801.2086 129504.5843 19838.5773 33632.718 7636.3035 54445.0519 25154.4645 57033.2112 15534.7846 50481.0181 25868.1717 471144.192 32144.6917 53963.415 42826.4485 30136.063 30136.063 12092.021 35237.5189 42478.4118 21016.7267 18335.8328 36217.1924 18466.4568 20773.0782 27553.1094 14061.1353 113112.7622 56254.687 45146.6779 30396.1556 29371.797 53788.5688 13729.8407 25468.071 116672619 pcag Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 13585.9736 5546.6598 21235.6165 45545.9298 12040.2037 6371.8591 7964.0214 2670.526 11232.3854 16594.8495 8040.9316 265448.1554 14170.1074 19852.2727 30883.6578 15462.8572 15462.8572 10094.7765 16710.235 15811.7856 28797.8519 6024.6376 16223.2462 18381.6899 9899.7229 25444.5306 5688.0104 25862.7437 21304.2133 34229.9274 7986.4107 9755.5213 17064.5072 4534.4662 9110.9704 347578478 FBPase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 7208.3814 10040.3294 14580.0105 5451.3597 3668.2699 20823.4602 5166.8505 5821.1088 135524.1508 7882.1541 7301.5701 7675.4012 6251.0519 6251.0519 6885.1493 11960.8919 8031.6741 6915.4288 10152.7265 20571.8262 3349.7669 3901.9837 10932.7661 3653.1769 15869.5468 6714.7642 12233.6045 2988.9231 5937.7428 7888.0328 5529.6893 7441.3544 139478385 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 8147.9716 6671.8619 7364.5409 7737.4947 5709.3735 43915.4604 10039.5376 14084.2176 8582.2877 8839.5121 166351.7912 15227.2703 11921.7878 40096.0463 6974.2126 6974.2126 29893.7654 20005.4968 13786.2332 113485.6691 15236.2176 15581.5573 7715.1286 7666.2682 16408.6546 10353.9762 39720.0468 6081.9764 12033.3039 8762.9252 8160.5169 10049.5253 5774.2782 16802.0517 269793890 ara Carbon Cycling Carbon degradation Hemicellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 13717.9209 55244.8993 72520.6415 28654.6572 6012.5474 19338.991 9171.3893 11743.089 13293.7913 7874.5575 257764.2231 10552.3109 69788.2946 11185.6199 5574.7477 5574.7477 28217.8523 15138.2317 11461.8273 11222.7355 8646.5285 7667.978 5565.1385 8508.3184 19610.3243 8192.5608 16294.6385 11352.6504 15503.3659 9356.0661 9365.0749 9488.0077 7203.4197 9382.1738 296263880 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 14734.3506 9862.4668 17156.8886 6583.2306 14024.3948 5633.6429 11034.2361 7987.2653 5386.3051 101878.2612 8031.4187 14743.1313 11028.4582 14102.0022 14102.0022 8953.2464 17529.0352 5459.3018 8674.9936 11589.5463 4608.427 5677.8707 10414.0928 14413.2044 4257.7919 20057.7661 11007.7478 15246.4393 5446.8608 5892.6404 5693.1805 6817.4032 6911.5183 365835534 cysJ Sulfur Reduction NA Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 30669.2182 10076.0326 5433.7922 3896.3603 18200.2304 9179.1184 7877.5293 15948.755 7167.6494 123040.1918 7848.3271 6889.2803 10564.8834 4213.8408 4213.8408 16512.4965 13665.9712 16254.2044 10595.0735 19078.6475 5574.2625 5132.0158 6437.3995 7158.1112 10010.2334 53476.5898 12748.3365 11651.9522 8289.4132 10357.8675 13993.8137 19751.088 40947.43 88787490 Sir Sulfur sulfite reduction NA Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 28510.9032 9935.7337 7594.8813 7367.4432 2564.8984 15922.0113 128299.9687 16985.3613 10909.0542 6219.2346 304670.4473 12230.9628 6336.1258 6143.2606 4985.1976 4985.1976 4488.5457 16510.692 8413.7486 12273.983 8005.2892 14490.8727 5182.3999 4755.0367 21549.0637 4707.9394 53357.399 5123.9353 11331.7022 9907.7188 8787.828 10016.8517 5162.5942 24098.2729 325923169 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 167877.3972 16769.7967 35624.7292 17877.9049 472762.3497 21024.3749 42183.4603 57053.2381 27281.8976 27530.8568 99304.0331 64461.4448 651927.4241 75204.98 85122.2282 151072.1785 226347.6272 226347.6272 309313.2191 60719.6275 50515.137 83369.7447 190321.0563 25361.663 146348.5407 60415.7967 111039.3839 67482.8364 524959.973 206657.542 119602.7997 69674.7953 67051.8897 55074.3349 71423.009 35573.2955 88864660 linb Organic Remediation Pesticides related compound NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 10551.9732 686562.0714 8601.7126 11507.3933 7847.394 8817.2457 10846.2805 14941.3195 9257.0259 9582.0559 16158.1576 9185.8705 423176.6121 12287.4789 17627.4831 12351.4258 7983.9836 7983.9836 10655.3816 15191.6042 10057.8288 12033.5154 12925.3232 14956.0692 5896.8381 7624.5604 17806.1748 5714.0151 25246.1805 13975.9525 20389.6221 5508.9968 9770.1393 7125.0427 6843.162 15752.8553 383785064 APS_AprB Sulfur adenylylsulfate reductase NA Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 14167.3092 10930.884 43924.6948 68716.3084 13285.4354 15302.3856 7877.9931 16452.3173 23423.4303 9838.2395 269156.7192 18325.8997 18133.641 12906.3658 6873.4905 6873.4905 11666.6187 27813.4709 14911.8178 15652.5747 20174.2516 16166.4765 128238.7444 7807.8206 19978.3201 5976.2162 32329.8322 16393.7356 21770.5924 41916.1522 13608.0044 12113.7347 10392.8089 31246.0384 386772567 amyA Carbon Cycling Carbon degradation Starch Brachybacterium paraconglomeratum LC44 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 5866.481 6177.6767 11861.1298 23782.2877 3603.7403 2035.963 5117.5848 11807.4626 6761.7544 110895.2668 10660.7419 7542.2792 7286.6892 6526.611 6526.611 3732.3475 15823.1475 6275.3252 5740.949 9486.1531 16099.0996 4982.8319 5923.4525 8821.4434 3305.3108 15859.676 8949.2555 12208.7315 3738.4801 6136.9647 67591.1765 3793.8245 10337.4346 347580930 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 9962.9929 10878.8314 3052.1263 3373.8206 4025.4388 3275.1679 17222.5893 11206.9412 11206.9412 5000.7955 20844.6576 2344.9415 10930.5432 4357.5712 2195.3179 3786.0603 7661.9786 115421585 chnd Organic Remediation Other Hydrocarbons NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 4687.0037 15538.2794 5564.9407 7806.5933 15982.6502 6407.6998 4884.848 5371.2963 3731.5257 10195.1444 6798.8403 5786.2134 242540.0195 7765.5338 11129.7891 24247.5767 8255.0677 8255.0677 7199.3205 14808.8498 11967.9041 7701.1579 11457.7726 11135.2169 5797.4954 4706.9294 12745.2343 5431.8084 23650.5271 11902.8648 14517.5104 5981.8738 6359.2158 9526.9103 4661.7515 9996.4532 359778069 terc Metal Homeostasis Tellurium Detoxification Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 16663.0866 7179.6498 24871.1469 12192.548 5289.8218 5476.4258 8246.7798 11817.2445 18276.303 144068.3325 14302.0263 35403.1306 15063.4989 14443.9003 14443.9003 9216.3044 33358.9968 10891.4701 15667.698 45440.9028 7675.1942 7124.544 9275.8295 22208.2156 7478.1866 29256.7385 25330.9626 18522.4443 8362.2384 29001.0456 13752.1514 11682.8213 10654.4361 294789257 terc Metal Homeostasis Tellurium Detoxification Simonsiella muelleri ATCC 29453 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Simonsiella;species:Simonsiella muelleri; 4466.5225 4234.3239 5943.0495 2227.6552 2415.3812 6866.5668 7351.5789 2805.6557 200355.8046 7247.0834 6048.8164 2756.1272 2756.1272 5603.457 11401.1196 6102.89 7790.436 6823.7445 5292.8576 5902.5189 3520.2135 9311.6222 4426.8581 4466.3355 4068.1724 9413.7797 3769.4018 4715.8897 8290.4506 4073.7327 8159.9785 122088729 dmsa Organic Remediation Others NA Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 4964.5187 2715.5191 2772.8253 2772.8253 4015.7719 7087.2996 4285.1729 5041.3262 7119.1121 4313.8106 5159.4996 167647982 RgaE Carbon Cycling Carbon degradation Pectin Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 35341.8467 85536.9097 21976.2271 53490.521 84807.2692 41148.403 26291.3715 63001.2567 153570.5396 94463.4838 42942.6558 118917.0248 715182.172 33663.2044 54276.3793 52479.4415 97258.9889 97258.9889 60812.013 70143.8154 30162.277 36479.6594 36803.1213 27004.6144 23953.3399 43336.8783 67854.28 89338.0252 162695.9258 123860.3256 63080.5459 30638.8966 45904.0486 37156.1626 19938.7234 76553.0744 99030609 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 6377.8403 54925.0007 30464.9461 6092.0529 5359.5689 6014.2052 5180.3006 23084.9729 9179.1303 553205.9944 9109.3761 8413.1524 23084.5985 12158.6652 12158.6652 3666.0715 9592.9644 5888.8302 5071.2616 17077.5779 14729.6135 4132.7995 68750.5872 10577.1885 22837.0693 2529.2576 4755.5731 14874.2977 3565.733 10078.1563 311889818 ppk Phosphorus Polyphosphate synthesis NA Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 200954.1938 24069.6471 48755.6562 62460.7013 14660.3957 15342.4442 14497.4909 15683.8379 19857.3898 40698.3209 41024.7581 1440943.4258 24622.1396 34466.9969 23850.6462 18003.2189 18003.2189 11997.7011 50036.2285 25739.673 19601.0372 51270.446 23724.7977 35289.7166 24900.179 38537.56 19503.7237 73674.6717 31665.4746 165530.1623 38909.2331 49111.1706 17640.0518 10895.715 41239.8866 121719230 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8072.3609 11879.5307 6385.1826 27219.0747 2521.5045 7417.0612 6884.0037 4221.2974 120691.665 6452.8094 10590.4581 3097.9994 3097.9994 5099.2966 15402.4482 6399.8012 11076.1638 11535.3708 9730.0896 4371.4897 4661.0088 9912.2921 4941.1868 14306.8546 6858.1274 9613.7136 3936.583 5784.1435 7605.8957 7412.5941 13497.5134 299755403 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 17696.3737 9189.4894 8436.5622 7854.8127 4985.1788 11736.4655 17807.2104 8646.3984 5684.8065 18363.2473 18370.3795 7773.7315 6299.4974 6299.4974 11335.5748 19258.9494 15224.0111 13661.9742 29916.9681 16485.1437 7946.6853 8947.1108 19785.6248 4604.12195 34723.9017 14254.3423 21514.9154 8328.6253 10709.0016 7942.79275 8655.9151 16218.2419 296129588 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 25783.431 10225.1767 34209.2619 35424.9349 18183.2847 36930.6745 23923.6357 11195.9273 15615.9376 27339.2678 30396.7719 475247.2204 22407.7967 24631.4675 33637.7766 51838.9452 51838.9452 20406.0183 51728.4741 25127.8997 16623.3517 66151.628 305863.1131 18744.2465 23429.1767 28954.4796 57121.2799 45124.2529 31587.5198 99363.0259 34698.2608 31665.0076 68546.2559 45176.243 249991.931 145590791 tmoabe Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 45772.4788 16560.3592 9359.8045 57134.3043 42438.3928 30584.711 54863.4182 104863.8091 20184.6096 38441.6471 73017.3125 819889.3998 28110.9629 79852.7336 80171.8858 23415.7963 23415.7963 38046.041 68442.448 23411.4177 30210.4814 61653.0904 36182.2758 112588.3494 59370.0504 39763.5516 23375.9632 58770.4487 35646.797 52357.8277 23739.1558 53396.6718 40189.4181 22655.5909 21941.7682 359788916 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 5383.7777 18361.0232 18665.8192 6208.0086 4804.7587 4309.2183 4648.9932 3049.4917 6910.7905 7305.6011 161055.5746 18282.2408 10164.1378 6120.8891 3521.5271 3521.5271 7959.9501 10772.2802 6547.5467 24547.3415 241895.7113 3455.9445 4066.4675 6635.9312 9149.8228 17741.4674 9193.3261 7691.705 18933.5934 8666.1548 9282.1649 3257.6994 5114.3322 388279686 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 60731.7972 12406.9957 53607.5532 43076.1049 97162.2811 9726.4796 38225.3293 26861.6925 20369.0282 61850.6815 51613.7305 31145.3172 981996.3022 36621.303 64854.2605 53702.2041 34598.2215 34598.2215 24757.0703 69076.8007 33342.2111 39325.7056 52386.0575 71081.1957 22796.0359 32227.3388 61757.1655 25016.7753 108179.4979 21523.1576 51465.4842 24817.1343 43502.2977 38403.6336 20481.3824 147423.9472 290957276 amyA Carbon Cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 232433.5307 162912.5452 9008.3188 7862.3332 17107.5537 11367.4456 19932.7104 47822.7642 25260.8614 25199.5589 14381.5462 306403.305 23061.4743 70240.8615 17096.573 13950.6852 13950.6852 16823.6793 29069.9935 14121.5123 105083.145 82508.4993 15518.4193 12589.1449 14671.0893 25245.2921 11673.651 57207.2708 30431.2607 31129.7796 7896.4706 20725.3805 20142.6226 16476.8779 13879.6816 269979653 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 10083.9141 5847.4179 23843.6644 11950.1103 8576.0615 3739.023 3732.2395 12656.8387 10672.0943 13681.2902 200320.1927 12743.0521 15585.4227 6202.0198 4485.8471 4485.8471 8112.3362 9148.3391 10445.5058 12596.653 12600.9509 17295.1335 5216.1516 5833.0265 16080.6345 5108.0913 13214.2596 14691.1025 15258.3064 5515.806 8480.6204 6809.1978 4285.4841 21335.7232 359774896 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 14494.9344 6495.0947 7134.9248 3736.4914 2802.7454 3461.4783 5593.8326 7654.2475 4550.0298 104320.3239 7873.8238 10367.5854 8114.1147 3797.8275 3797.8275 8624.7158 14300.428 8071.9671 10790.1845 24245.0677 10583.6148 5803.6492 6610.1367 11034.5014 3981.9494 14853.0197 10783.8336 11837.7636 5077.5634 6832.1137 5833.2545 4313.2527 10927.2977 110632264 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5413.7179 210832.7595 5172.1765 2454.9515 6714.4874 11063.8128 7936.8388 172105.6971 22429.5167 3839.8429 7915.8352 4251.8766 4251.8766 6908.6693 9211.9237 7227.2913 6125.4146 7842.5297 16159.7836 4703.9822 3795.0484 11087.2759 5066.2069 12817.1172 46421.3537 9348.4158 3615.4836 6347.1588 4121.7345 5317.4972 8649.735 206575717 xyla Carbon Cycling Carbon degradation Hemicellulose Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 6776.2296 5371.5927 7802.3181 2338.1567 6915.2484 5703.0441 3840.6859 113658.8638 6114.3215 6341.5711 3977.3916 3977.3916 4565.1281 11957.183 9815.0793 6105.9794 13343.4543 9421.8015 4259.5012 3977.4709 9980.6808 5196.9144 19677.1487 9963.8346 3588.1776 4763.7702 6017.6076 4061.7393 8948.0656 308212919 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9869.8084 7295.8651 8691.4343 8594.7056 9282.4008 5358.2642 4317.8392 5659.205 4785.9554 78418.9108 4605.2466 5414.843 5525.2311 5007.0924 5007.0924 10477.922 6990.7437 4475.6977 7682.4018 4771.4209 5700.0959 5077.95 12619.0572 172342.9032 965124.1841 13800.5257 10046.5742 169454.3416 10956.1527 14130.8968 8521.4198 9348.0896 33284997 chnd Organic Remediation Other Hydrocarbons NA Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 11159.3332 7649.0753 2492.6975 20768.6537 10477.7485 10600.6888 100610.0736 9136.1005 9559.6916 3725.5017 3725.5017 9946.601 12844.2245 4157.4692 4899.5675 8694.6936 7464.6908 5171.6867 3413.9159 16399.4305 8094.134 6754.083 10054.3395 3013.4504 4067.9995 7473.5116 4804.0299 300545323 amyA Carbon Cycling Carbon degradation Starch Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 6535.2402 5147.727 3816.3533 6736.2007 23329.6037 2324.0479 55124.8578 4323.415 5921.3116 4198.6345 10557.1342 4611.2963 9776.8199 3933.7028 2575.1387 12612.7387 3106.4815 10352.4193 9193.9658 5738.3911 3605.4547 23514.2898 2375.3135 5061.651 384086661 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 53453.7384 16162.6138 42525.1093 57792.7158 67228.8122 36399.6668 94292.9632 44617.4294 20895.8649 38019.4793 135196.2848 58120.9927 600136.6343 39816.6062 37327.7083 28806.9432 45812.9073 45812.9073 25904.9504 54391.668 44188.8406 31869.0923 124099.862 46644.167 38335.9362 40616.6598 48353.2405 51434.4763 296512.609 81971.2481 62112.4718 26842.695 58788.7797 78719.6712 67391.3416 65489.4074 29832916 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 97497.6016 47051.3466 7268.2199 57838.2011 18256.7738 36975.6256 77026.1312 33783.5137 64551.982 48780.8897 36170.9041 508516.7544 38230.1115 36475.7089 71314.951 55313.7344 55313.7344 24766.2613 75475.2143 15907.6319 34069.5573 87741.467 106193.3519 19525.7305 63908.4989 44506.8101 39114.7778 74478.0297 28620.7066 54499.8605 15620.9199 63367.6263 51194.3753 23238.5106 82536.9006 386393978 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio sp. U5L superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 16675.2094 6684.572 11358.2679 8579.4593 11216.4144 74151.2298 65104.5029 7824.591 4850.7709 7470.8444 7470.8444 3883.3051 17748.7925 6694.0348 6443.185 20084.3364 6627.6624 3539.7126 3469.8597 12185.6277 4489.1174 16751.4666 18331.0116 23177.1629 2802.1562 4947.8749 5145.6762 3712.3227 7947.8957 39651084 nitrilase Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9415.7318 4677.3776 289537.1219 2172.6436 8476.3099 2399.3478 85894.4796 5743.5761 6565.1491 6565.1491 15909.4965 4738.3529 4457.8412 5000.145 5097.7099 3957.4907 4925.9952 11202.0775 3101.2798 30449.7146 7651.959 11702.0736 3362.3687 6725.5871 4525.218 5520.7177 21782.0929 220924434 fccab Sulfur Sulfide Oxidation NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 14828.0825 37416.1049 20074.088 9725.9264 4838.6893 14498.0584 191498.3133 8958.1069 19717.6928 21726.2295 20976.9908 499031.703 119147.1479 66148.3339 245416.4337 15765.9512 15765.9512 15086.1868 40677.1625 17784.7112 27705.4068 106096.8237 15077.357 37311.0869 14012.9828 22503.3084 20525.7055 40794.5638 27411.2571 24127.6724 15178.9002 22561.9461 14779.439 12703.8181 337743.0253 270043665 endochitinase Carbon Cycling Carbon degradation Chitin Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 87954.28 23216.8377 33508.6031 182776.446 22103.5145 9262.6644 32041.9511 210254.7801 37016.3598 28611.3204 110618.7079 47852.5107 799340.4134 188736.5328 111456.4976 60611.7088 72580.2706 72580.2706 23813.7582 71427.4849 27145.2781 34514.133 53195.7619 33603.0013 27597.4741 29562.6215 42199.2328 36841.8924 88283.7854 49364.0188 132830.471 34570.0522 31796.4586 36028.6069 23674.9743 221007.3258 374610029 merb Metal Homeostasis Mercury Detoxification Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 20259.6695 2616611.9672 609643.972 39782.6699 18640.6062 15046.5838 7327.2995 2956.7471 28900.0496 13388.0671 28459.3467 201368.6367 12512.3942 24008.5179 34798.8081 19419.1211 19419.1211 6884.0202 26905.3818 13444.8784 9726.5153 64582.2482 516242.4447 7379.7777 12617.4364 12665.3047 17937.0056 43264.435 18096.4743 23054.0979 6511.4226 18224.3287 27076.4395 7548.5697 62413.4108 119371704 narg Nitrogen Denitrification NA Castellaniella defragrans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Castellaniella; 22903.0582 6506.5865 7483.25 16280.6081 8379.5917 20181.9452 5023.6769 63968.087 27425.8977 98647.3602 260714.7015 18145.879 11670.7353 17608.9506 18720.3121 18720.3121 12912.5866 23906.4815 25881.2453 31688.6848 33703.9558 29733.8637 20559.8521 26987.5405 33357.8168 13764.7276 72588.1871 18441.9993 24611.0645 8425.6484 23520.7374 29369.0456 25688.9537 49133.5628 15787632 gdh Nitrogen Ammonification NA Hebeloma cylindrosporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Cortinariaceae;genus:Hebeloma; 15207.1085 3051.3711 3386.3991 2773.5525 32967103 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas sp. KL28 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4915.3327 283994.3867 6135.7868 11467.5329 5195.18 4584.9525 227874927 sqr Sulfur Sulfide Oxidation NA Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 17186.9824 7244.8732 10250.6097 9616.5262 11592.2825 6852.4161 9483.8324 16779.4074 15579.4672 10001.8176 304691.146 19167.5034 14904.4781 12290.3751 8632.4143 8632.4143 11922.9868 24539.862 19624.7798 17092.7431 26502.2272 24005.5961 35453.4203 10147.4459 16812.72 7867.1437 30688.6358 18336.4471 21757.5791 8131.7426 13371.5512 20746.3753 8171.1191 18124.1579 329851586 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 17695.5154 7698.806 6336.024 7220.0978 5944.7654 26120.6389 5098.9902 12700.052 6553.9794 94630.2423 12130.2265 8070.4279 4029.9477 6172.8678 6172.8678 9451.6125 13661.8683 11740.9164 137165.4424 110957.7428 32032.5055 12149.3879 8752.0624 11768.8012 10014.9814 20425.1927 10418.4211 14312.418 8088.9444 8583.567 9142.2 7394.3039 8353.5693 343802060 cellobiase Carbon Cycling Carbon degradation Cellulose Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 21922.6687 9662.5691 9875.6254 5260.4039 11463.1702 5135.4042 5523.6582 10274.3899 7121.6067 119517.381 4251.9867 14038.2192 27148.7553 17523.8006 17523.8006 5641.2086 10860.8851 3907.1253 7751.5041 4803.0888 22616.7466 49517.038 9903.0494 7540.4702 6262.1938 24380.4224 16477.2982 11863.3176 4601.3247 10627.0605 10465.042 11354.4626 25641.738 146191410 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5246.5554 5908.0552 13674.2656 2829.8187 2391.2989 3682.4839 4044.8548 2884.2704 130903.9176 7003.3047 20119.4253 6317.1176 3546.6173 3546.6173 3917.716 9813.3165 5266.0691 6385.8605 11794.8908 47082.7919 3817.0396 10392.436 2052.3198 16076.7883 5543.1753 8713.4649 2292.394 5504.9863 5913.3235 3820.8006 4844.2325 373956109 amyA Carbon Cycling Carbon degradation Starch Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 30858.7635 26298.3047 129829.6735 53812.4108 7245.9642 13049.609 8026.2813 11497.5524 23995.0803 9466.6999 1259763.6529 17748.1751 20941.691 23776.6502 17275.744 17275.744 9630.1894 25120.8457 22013.6498 7274.8779 19065.0184 33245.312 5441.0762 15170.6036 58781.9744 10322.8467 38864.1369 39711.7276 43023.0882 10429.764 13620.1908 14827.1361 3834.9211 7351.3319 38427030 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4674.5897 45416.2505 12260.7644 26775.2793 8474.4854 3321.1176 3513.7068 3336.3398 4397.754 3668.6647 73068.1567 7181.3153 5790.7935 5765.9203 5210.2209 5210.2209 3005.9786 5819.2855 6015.1472 13513.1977 4767.0589 18185.9759 2389.3874 6454.1839 15127.323 3232.111 12622.0899 9462.4368 9566.3551 4788.8367 4915.5994 4203.1844 5198.6991 255269455 ara Carbon Cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 13368.3774 5097.812 5161.6308 3943.7141 3034.418 56732.5123 11871.3685 4993.6079 10174.6301 10174.6301 4579.91 7170.4965 4520.5564 7541.2911 4829.6746 5045.6477 2608.9179 12704.6278 6327.5148 5480.8176 3681.3856 6849.0239 4052.91 182679101 arsc Metal Homeostasis Arsenic Detoxification Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 47496.2173 35456.98 21182.8886 56758.5947 93776.3694 36074.7117 90056.4186 49017.6308 28121.7917 36587.4459 53807.377 845225.1632 46392.2685 45776.3418 76803.3365 38605.2734 38605.2734 31732.463 55040.8231 34298.6719 30170.6253 138093.9301 47190.3477 46933.563 52980.5975 58074.8016 29596.3282 110557.378 37913.9113 56425.7199 34833.526 45573.4951 113515.3136 24849.6719 42673.5194 89241998 rubisco Carbon Cycling Carbon fixation Calvin cycle Symploca atlantica PCC 8002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 283245.174 78560.6375 37450.6681 654766.4922 32002.3067 7915.8163 22773.1252 21781.6546 23719.5247 21979.3502 47149.3379 391029.3888 23470.2986 62467.5433 52416.1327 36731.8412 36731.8412 17364.1523 31688.199 28913.9176 41013.0671 15590.4832 25011.0375 29141.4197 36462.89 43792.0387 55162.1549 853706.5091 344410.7888 41579.3649 38259.9429 24612.5291 55083.6412 7198.0506 12677.3616 99030630 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 16511.0099 10818.5543 10786.6656 41010.4513 12786.8432 39050.0965 17390.7294 6823.4688 12399.7282 19076.5028 10536.7324 259375.3743 16225.4151 27595.2443 27111.9297 18915.4383 18915.4383 13239.5386 21268.6404 12833.9012 20916.3459 24014.5452 16933.4749 6925.6902 8771.6724 32954.642 56363.5061 33246.0927 25294.6391 21910.5026 19409.0048 13902.2037 15530.2836 59338.8404 130836.1521 328921299 bphd Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 32862.3353 30722.8266 136259.3844 11763.925 30840.2268 9214.8143 30199.2836 8521.1383 11324.6927 5495.2125 8310.1375 7957.1544 290198.4494 11210.3261 14328.042 34035.3965 13419.0258 13419.0258 6641.4784 49342.3474 7952.6141 9034.8438 30084.3611 10295.4316 4105.9002 6104.7038 15222.4377 9348.442 13367.326 10272.4884 14549.4436 75105.9319 11693.8566 10821.6039 5759.1067 29335.7959 212538201 glucoamylase Carbon Cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4078.9664 7218.3458 384147770 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 16343.1298 5680.6369 14887.0588 5432.0389 5381.2517 8277.6529 14954.3905 12153.2677 11810.4096 184576.1758 40812.4392 14891.5095 12274.428 11396.5023 11396.5023 6964.0074 29532.0798 11700.2561 42010.6261 27099.5515 6611.018 6648.5189 11115.6583 15484.3253 8229.2969 67540.5724 13449.8357 15236.1977 10216.4758 43001.2348 8705.6048 9662.8257 14901.8511 240857870 ppx Phosphorus Polyphosphate degradation NA Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4526.3944 2608.8608 2762.7969 3326.0774 4146.9457 87156.3672 5849.5939 7578.0614 6505.3471 4152.3338 5229.5419 4616.5818 2885.8788 6137.9532 2374.6105 8043.6819 7360.7079 7055.1035 3326.9175 3096.1325 3727.2782 2689.7127 5897.5506 63029755 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8885.2287 26389.5089 22613.4204 3386.1014 2388.4278 60875.7397 4437.2435 2109.1095 2109.1095 6604.1718 5519.0875 2979.2222 5555.03 2004.4969 373560077 mcra Carbon Cycling Methane Methanogenesis Methanotorris formicicus Mc-S-70 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanotorris;species:Methanotorris formicicus; 9200.7455 3802.3316 3396.157 2709.3344 2371.0867 3033.9011 79149.0924 5035.1023 7609.7128 4223.1873 4265.5071 12217.7121 4409.8988 2753.9193 2902.7664 3136.4755 4292.2928 145046538 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6089.4762 9167.7987 5628.5088 75526.0242 3709.9431 4583.2322 3644.6901 3644.6901 10356.7903 5548.5268 6419.2687 3450.1703 5261.2369 9584.7915 3993.4915 5296.154 3192.5042 4698.5218 3770.0744 12085.9943 66766474 pme Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 26089.4783 14831.9307 1899.0958 21050.0187 15050.204 2585.8586 4164.6706 4226.2473 7193.5997 4374.2159 4374.2159 4825.2907 8302.6033 4376.2258 60041.006 11053.7309 17499.7516 5004.5855 6558.9321 4925.5458 15089.8403 5037.4895 7015.7142 24513.555 5081.3541 3252.1764 4801.3448 15732.3541 78695260 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 78107.4393 197807.3739 17095.4985 27205.6613 15589.1936 35576.1408 71511.404 39510.2017 105576.1456 28222.2113 13467.3558 469740.3824 30422.3534 44797.9151 36482.801 22141.8641 22141.8641 39772.0985 40046.694 30575.5546 31412.3721 44120.6917 32916.9971 18969.9338 18883.7525 39905.9968 22807.2397 53154.0781 31724.1452 40024.3156 23644.92 23279.2067 31406.8846 22121.6582 56664.7155 118171974 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 223008.0877 24403.6837 14820.4514 8632.9344 10455.9237 21698.0386 4482.5971 22631.6419 26770.2603 19658.3026 970149.0308 37226.9432 23792.8493 24549.278 13685.7481 13685.7481 41501.2223 28067.1205 18057.3043 54965.9872 25913.4008 22143.2782 15381.0025 18975.3374 28074.7528 17116.438 57553.2055 28690.012 87788.447 8333.4218 28180.9119 28508.1266 54428.9739 39854.6799 356415446 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 3789.0081 4075.959 6230.8982 3310.434 7238.8968 6736.7935 3158.0974 94417.6874 8879.0226 7302.9746 3702.3101 10586.7577 5737.1475 4693.7146 9875.0154 5728.7718 6692.4773 22716.7604 7570.1045 126394.9336 11140.6181 10925.4758 8964.7642 4929.4708 4265.9707 7274.7362 2821.0403 5098.3883 25900754 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8310.0845 5966.75 15326.3839 19941.2127 6956.5759 7684.8351 2886.3498 3124.7869 9273.4742 5998.5276 131645.203 5412.4633 10354.374 12222.4707 20762.0158 20762.0158 5308.0898 11303.5869 15356.5252 7735.0134 4594.49 7926.0734 3144.8959 15202.152 11534.9832 4599.464 24638.6117 14741.5743 10507.7421 5743.2639 7341.5138 7446.1116 3032.2077 9551.6303 341925977 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 33164.2692 49414.8331 11154.7773 34630.379 14322.5705 47832.8311 9804.4016 7957.1451 7825.855 8053.7234 206278.0729 57023.0619 18868.516 54545.4599 18446.5318 18446.5318 20964.4191 20196.5405 15240.9087 20570.683 15131.2144 8699.8534 12446.2407 18595.0547 34453.0857 33928.9824 53548.6675 19448.3801 33584.8696 15970.7106 14707.0592 16836.8236 9212.3391 14062.7755 372269454 arylest Organic Remediation Aromatics Other aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 12803.4781 17942.1735 9387.5682 8110.6682 3267.6838 9077.4655 12448.8476 8285.8721 13905.3928 20529.7589 403371.6395 5616.556 17490.6114 42966.4534 6974.1808 6974.1808 7095.6515 14988.4327 9242.4218 12738.1239 22311.3026 5337.4883 31035.9444 5470.2521 8735.3531 17589.088 22846.364 23219.2147 24543.1145 12472.235 9589.5947 33719.2513 28677.8312 219965754 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14344.1422 10315.2387 14246.6759 11127.1979 25043.2673 4577.2269 5178.7632 10252.375 2547.1007 138135.0348 9399.1264 5451.7898 8599.4764 9226.6232 9226.6232 3747.4061 11456.2693 7196.6376 10370.0333 7347.9493 8893.3101 3967.495 6484.4006 8385.9116 6007.0169 26880.2907 10545.3201 12920.0077 3816.8734 7681.2695 7788.8257 5646.6237 11171.1635 330430166 terc Metal Homeostasis Tellurium Detoxification Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 7725.6014 81133.2738 13249.1808 4368.5873 5895.5634 7774.9022 68557.3124 3793.7528 3943.2154 162632.2923 8349.3784 7011.7212 18660.1402 5450.1208 5450.1208 7494.1673 19627.2939 7697.6044 6335.1309 15511.9305 9772.5794 3059.1202 6733.6147 9508.3511 10785.9238 21915.1025 9687.9123 15031.7798 13965.8323 9017.1045 67718.4863 5888.3087 12209.8778 385665736 amyA Carbon Cycling Carbon degradation Starch Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 4828.4633 15151.9456 6029.2671 8816.9342 3613.0053 4530.0334 71981.6842 10621.0066 5150.4395 10059.2044 10059.2044 4928.8407 16511.2771 5573.455 4242.2382 5558.0869 3475.0656 7412.0854 13304.4841 28570.5219 8453.7339 9675.7837 4331.4153 5122.3801 2495.2644 82410283 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 44622.6452 18073.4637 58041.4041 71369.9143 26200.1696 40784.0848 75842.461 45826.772 33162.2099 70460.8273 51886.0888 37556.9351 2446630.6844 52753.4257 50182.436 61733.5254 35708.6071 35708.6071 34864.5418 66610.9631 37149.7336 156119.539 55761.9065 52133.0879 71629.2181 23615.7606 55022.9985 27528.6307 88151.5405 59419.3158 84841.8194 27457.8177 47197.3151 50378.1873 29270.8701 313859.8477 357224867 nosz Nitrogen Denitrification NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 88800.7316 7242.9921 10856.205 2171.6346 12404.1378 190493.3584 3558.6408 7926.4455 6010.9859 13701.3841 13701.3841 4425.4201 180697.1305 9514.7582 18575.5436 9256.2769 65731.1742 166783.6176 12191.9238 75001.8746 65777.333 7142.7506 14827.4376 3437.4114 6304.112 37072.6127 163054.2038 7070.1143 300112978 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 5698.8509 11162.8704 8005.5502 78064.1572 4515.6228 4538.4846 5703.3276 5703.3276 30175.715 8587.1405 68311.1856 6212.8193 8129.9039 3851.5449 7388.9948 16096.1417 5176.8916 2177.7756 4432.9103 5124.6545 6718.5379 74035820 cmua Organic Remediation Chlorinated solvents NA uncultured marine bacterium superkingdom:Bacteria; 13363.554 6439.1125 16961.8449 5339.3603 4179.2127 62255.0772 11408.2711 6015.039 6419.3284 215098.7584 32928.9014 17055.8263 17055.8263 12274.1644 10321.4564 5145.1314 25109.0707 42360.1487 6334.9041 3448.9369 2752.5831 12023.8171 9342.5877 15694.8423 2594.1218 152125.4481 16179.9084 13186.3408 323366282 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 6277.0421 366843.1502 6445.5344 36932.7973 6552.3339 9309.7077 17437.3018 13101.5683 7314.1905 10749.3523 33954.4933 231576.7396 23556.6032 18420.2973 70032.6337 24909.0686 24909.0686 3300.2307 24401.4461 13078.2785 4764.662 13752.642 3813.0312 7635.7143 9465.3549 19015.8178 11394.0237 15500.3633 16080.174 20326.1103 6121.4564 9734.5451 13381.6883 2405.5118 5367.8601 54022723 amie Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 12704.4747 18085.7955 34189.9924 20965.6708 22370.0355 26486.6161 29611.0521 6626.3914 19428.5812 16966.1298 12084.1215 369943.381 14847.0367 15617.3506 19152.3265 12221.2159 12221.2159 10210.4947 25858.4442 26456.5795 21708.854 35284.7041 9873.4153 25797.9965 11006.3045 21321.6225 14632.2888 57935.2802 14785.6958 46357.9194 14056.0696 14404.8032 76539.33 9430.4845 28903.2569 133914519 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9434.3682 27951.1064 23129.5766 4053.3061 14115.853 6701.9965 6467.6962 5667.5139 2897.4213 8949.248 12899.9608 12483.6792 333395.7435 6711.5916 16052.924 9539.0854 7642.4064 7642.4064 6818.0518 20031.5046 13956.2154 6617.4495 20447.8545 10201.4484 11235.7268 4666.4641 7307.7459 4695.7645 18512.0008 10053.1692 11767.9321 6945.1425 14863.3211 10616.3877 9164.3237 9735.6467 400331435 linb Organic Remediation Pesticides related compound NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 4001.9242 9166.861 142562.0011 4609.701 5833.8317 88250.5145 8404.0743 3356.1728 3203.811 3203.811 3629.999 10293.8642 12077.8072 2930.1121 20006.1247 8458.8215 4787.191 6129.698 2237.7914 4821.3542 4842.0836 116196480 nitrate_reductase Nitrogen N Assimilation NA Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 52888.7368 14522.0569 25121.3644 35401.7098 13268.8621 28175.4171 16806.5486 49369.4197 42482.3101 19863.0246 47276.3498 86956.495 29109.3439 19709.2587 61730.5903 42684.4956 13565.0884 18108.3836 57037.7136 12597.9196 80876.0953 59150.3386 58227.5757 16924.7595 27308.1172 30924.9293 35056.9543 384927537 urec Nitrogen Ammonification NA Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 18780.4101 7807.2142 9356.7844 20018.6717 4643.6322 4689.5116 5088.1399 5088.1399 7359.4797 4899.4569 8063.9327 7911.9066 4762.1322 6443.9348 10574.4829 8898.0888 13190.6622 23190.5639 14986.8513 307950780 protease_serine_fungi Carbon Cycling Carbon degradation protein Thermoascus aurantiacus var. levisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus;species:Thermoascus aurantiacus; 25946.7927 7341.6455 7107.3806 18390.2156 3810.2042 3303.366 5766.1338 10906.1118 6718.143 93420.7681 9108.0883 10391.7649 4058.3904 3168.4287 3168.4287 6000.5343 66742.2059 27286.5359 365243.6023 19529.791 12221.0449 4773.5593 4701.209 8139.159 3051.7636 17391.8654 7135.8875 89559.0449 14344.8362 8481.9872 23757.3422 3538.2353 22813.4918 365836813 terc Metal Homeostasis Tellurium Detoxification Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 18173.1883 7095.6421 24206.9075 12214.3305 4464.3501 4690.4645 29010.114 8260.9819 6765.2862 6066.2599 174059.0613 10891.0068 11192.9764 5828.7932 6400.1717 6400.1717 7662.8015 16521.2495 10358.5258 153409.0763 12684.1162 15051.4648 7253.3837 5854.6592 9588.9029 9566.572 14607.5273 11453.0288 14217.0343 5271.1595 14841.6479 7785.4892 6014.0074 32578.2016 211905377 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6981.978 93995.2346 6339.348 4210.6324 3436.7978 10495.5001 4773.0296 8770.6665 8603.4203 235657.4109 5655.9562 7330.369 5562.7906 3174.2737 3174.2737 17420.3939 8341.0864 4784.0357 14417.7002 16774.6537 7587.7912 4943.2127 5719.6061 10260.3423 3546.6562 14820.9225 9933.3622 15732.0065 5071.1224 12726.7344 8811.5512 5747.803 5778.3433 405363061 alkk Organic Remediation Others NA Chondromyces apiculatus DSM 436 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 95052.4511 61661.6785 108014.6863 18843.6053 87967.8558 123061.6571 16191.2383 57896.4084 24443.216 29224.176 61760.0515 51949.4774 1198857.5205 82251.057 53208.4455 110703.6931 120032.1312 120032.1312 60680.5245 92977.4217 33944.7228 32886.4939 68051.9873 20650.074 19505.4031 134420.4648 77280.9331 56153.0564 97007.2741 50770.5128 81029.2312 28999.0619 60934.785 110401.3417 28598.7956 62977.7378 327463660 cysI Sulfur Other NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 321389.2498 75602.0375 96708.3998 70379.6515 683782.7038 148194.5235 37403.7642 60888.7928 83743.5399 94627.412 121840.9936 95868.8595 3897360.1812 183156.6164 226159.5697 281506.9124 160418.1778 160418.1778 82144.603 91597.1532 201068.2894 72970.4866 245466.9035 87177.5991 57655.6762 74526.0225 136589.15 68947.4186 207391.0678 164109.2927 106123.3362 24996.5496 83650.386 115520.4623 38417.8925 77728.7509 223896443 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 25393.3222 206898.9876 11022.4527 2606.0721 2606.0721 2837.4474 86748877 nira Nitrogen Assimilatory N reduction NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 62015.7462 37054.1176 30907.8319 14803.462 6743.3026 5185.3818 8069.5848 4364.6946 7549.5866 10316.5228 4965.8096 290654.0544 8536.6368 5956.7947 9334.1519 6214.0097 6214.0097 4714.8128 17657.6108 9211.9531 7837.0353 350856.8777 7451.6929 4705.2452 43404.2428 10376.6349 15534.0994 34640.5909 8934.9037 13552.8321 9521.3635 9650.3665 6768.5138 4903.8052 16954.6293 28971842 xylm Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4090.1042 4036.825 3443.5082 9620.602 3890.9626 6005.9973 3539.1835 72115.7 3650.8179 6102.4101 2556.9515 2556.9515 4028.461 7596.7356 4568.8991 5955.7556 4762.4785 115423.2898 3801.0195 7762.8848 4214.3411 10946.3988 9676.689 7515.9474 13221.6866 4542.8926 6999.9834 12354.9306 4765.2721 292675287 limeh Carbon Cycling Carbon degradation Terpenes Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 62035.3696 95520.7941 17862.1748 23285.9371 16701.6748 16266.2935 11963.2605 6354.2744 14855.1143 55491.3812 16620.4565 375574.241 17169.33 18448.5146 13223.4488 11085.5152 11085.5152 12450.7232 21784.2017 14167.0604 13094.4214 19673.0047 20548.5165 10440.6191 8805.9401 20219.4884 8087.6278 32772.8886 14077.2565 22812.0127 14354.5212 18076.6742 19499.7054 10019.4698 19130.9714 212544516 tfda Organic Remediation Aromatics Chlorinated aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 13598.1014 9538.313 82910.7592 10344.6683 9455.7847 3909.9518 17597.8778 9499.8436 10279.318 6363.6609 168977.9709 15478.2673 42865.4616 8994.8827 24465.4421 24465.4421 8525.1187 19994.5235 10869.2325 14078.104 15082.6443 13621.8521 6106.3782 6947.4677 18995.4227 5085.4355 54643.7134 17687.8774 23805.2415 4468.0353 10537.1647 12341.2556 5143.3726 18161.5068 223038965 nosz Nitrogen Denitrification NA Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 3953.0546 9042.6882 9373.8235 2934.6151 5073.1689 4313.0796 10672.2757 10672.2757 12947.9727 3834.1945 38016.1081 6090.9163 2246.0169 3107.9391 8660.9139 5304.3358 4174.9493 3977.4407 3447.6643 296091223 pme Carbon Cycling Carbon degradation Pectin Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 58265.1493 38795.8835 31189.5417 40687.237 29946.6374 14427.4263 35191.5892 15921.5127 29973.4668 57799.3884 31982.4607 440441.4575 84584.467 134776.5331 79861.5123 37079.2631 37079.2631 23023.8245 163480.6215 23866.0261 53458.0981 84017.3657 39441.7569 54872.3748 26112.8128 76253.8893 23978.2111 88427.7378 75408.4111 71126.4814 19170.2201 38142.6165 33577.6407 72922.9086 34679.1238 323135669 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 42408.0502 15670.4597 35893.8424 86534.6187 55725.3242 19313.3845 27824.3791 70501.9146 10733.1715 46346.2208 143558.7511 33690.6352 1225757.7666 46470.8774 53051.5454 52630.1549 194915.7962 194915.7962 21837.8532 82693.2392 48306.2954 38445.2667 117196.3243 69480.655 26269.8669 30785.1482 100370.6028 28954.3907 114684.1128 96182.3834 101084.3159 31440.9607 33534.5512 45779.4302 27786.341 36362.3863 72162567 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 6164.2182 4049.0854 2968.3547 4401.5487 1908.6761 1908.6761 33001.2557 7245.7962 3098.058 148645204 nrfa Nitrogen Dissimilatory N reduction NA uncultured Geobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7632.8457 225194055 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 53624.5116 32363.398 21837.8852 27173.6958 9625.9101 20313.9044 14997.6399 11031.2793 15610.9297 17745.4834 12875.2849 953680.935 56229.2553 24784.6637 38437.8931 36738.8626 36738.8626 19961.6827 37318.3776 29304.1031 24640.0717 39836.8029 18822.1945 10758.6099 13889.7539 33318.0547 14167.0689 50999.4132 32718.9821 27810.2494 16114.0494 19473.8623 24084.5931 16321.7707 33466.6573 193226061 catechol Organic Remediation Aromatics Other aromatics Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 9728.1196 5186.4956 10229.8993 25508.9499 12768.9176 4849.2107 8255.3807 2928.0555 5824.7183 8871.0141 4991.5218 178741.6475 12495.2194 10503.0835 10986.7929 9982.3373 9982.3373 4890.064 12698.2872 13884.9122 6988.253 7235.7167 6925.2721 7184.8648 8550.6745 17868.657 4201.8693 15766.8853 11483.7637 14124.2321 20012.6174 6560.9671 5388.0785 4758.7707 10221.6943 334730090 soxY Sulfur Sulfur Oxidation NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 23130.1439 14423.579 8210.5278 8426.2152 13166.5038 6330.8442 16872.1984 22696.7863 10530.0444 302102.4403 17199.9867 18886.4137 14144.4234 27475.8262 27475.8262 7361.0152 21436.8223 18806.3675 12445.2785 19391.7891 12813.9223 7863.8288 10545.2113 24851.7798 9045.9988 33484.4614 22729.357 24627.0515 10364.0823 13246.8348 100985.2536 8295.7773 13072.8355 38520871 nagg Organic Remediation Aromatics Aromatic carboxylic acid Fusarium oxysporum f. sp. lycopersici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 5889.2313 96791.0087 45257.5927 3939.7454 6489.3608 4443.8565 3148.6532 5899.0736 3276.8055 86958.4771 6328.4352 106981.2546 2779.5137 2779.5137 7094.8756 6140.9707 20855.6519 2360.3795 3384.337 6525.8875 2515.7611 12470.8286 8426.2492 82690.4013 4989.6703 4578.1654 4412.0837 5205.2393 133915046 gdh Nitrogen Ammonification NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 10781.5391 13515.828 8942.4315 12108.6268 5289.9201 6755.0187 2201.2948 65292.1351 15924.8619 5209.014 333830.1264 9724.6039 11252.4951 5676.0107 9780.041 9780.041 7011.1991 16019.1483 7012.3574 10210.3543 12978.7339 8530.5238 5332.0182 36884.9013 12188.1058 8958.5984 105830.967 12601.7533 13868.8085 7047.4654 8647.4097 15332.4071 7673.079 26994.3291 214043104 xyla Carbon Cycling Carbon degradation Hemicellulose Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8904.4397 8104.6359 7672.851 3981.3921 5136.6288 9821.9275 2699.0205 98279.2196 8447.1839 6281.8517 5717.3286 20701.7426 20701.7426 2735.8853 8042.905 6351.707 4842.1129 8094.6363 3357.3058 5243.4348 8040.272 5917.9521 59186.3259 8094.6647 13422.6713 4539.4854 5611.1411 6714.8861 4142.1858 5578.6097 317504887 pula Carbon Cycling Carbon degradation Starch Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 19431.1012 104630.1498 16603.3446 24065.9935 4626.804 10134.0359 16553.4925 10227.4627 35463.3307 62293.5455 13103.3327 243740.2946 11453.6483 13533.0395 14157.9852 18914.6382 18914.6382 16144.4347 31785.1379 20005.92 19767.0972 22619.1469 9705.0133 7436.545 18065.2165 20634.8161 12619.7496 120427.9389 20641.4755 29843.0766 14454.5233 21403.581 16913.5674 14823.0902 23146.6754 336298868 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7863.072 3544.1147 3523.5564 7202.3291 3632.1972 92392.0512 65117.7614 5940.3399 8230.3879 2679.7285 2679.7285 7784.3389 7196.2779 10134.7242 6521.4407 2816.3925 5263.9485 9976.9424 2473.2546 13210.9012 6633.056 7311.9872 4045.6597 4119.0771 3552.4769 4282.099 296255692 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 21640.3669 12524.2892 44939.3446 12965.7033 62177.5615 12011.6761 8710.9723 67095.7046 11924.8671 14266.025 30287.2364 28591.5842 420321.6071 23797.8527 23508.7013 22780.5891 18374.4455 18374.4455 8034.4341 25685.3002 17987.0674 39487.6775 52524.7846 21647.1787 16368.3774 12234.6522 24426.8869 9332.9403 51422.0507 16635.0403 31000.9169 13765.9282 15788.0749 33581.4276 9357.9161 17109.5346 307943181 mer Metal Homeostasis Mercury Detoxification Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4811.7347 15080.6756 4848.3644 11700.4376 4323.1598 9254.2153 9398.8591 3602.1815 8788.0099 15769.271 8054.4971 8054.4971 12984.7295 16423.5522 24501.294 3530.8718 5355.9683 2257.3121 5660.1389 28117.3519 6851.3738 28217.7332 8033.8538 11021.4881 6015.1418 8440.9904 4893.6179 3412.7717 345298672 trze Organic Remediation Herbicides related compound NA Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 14481.8077 29465.083 11292.0167 14216.1226 25160.3853 8337.9423 275931.4806 10432.1274 19808.9823 9540.4426 148585.5564 12264.424 12988.5431 17586.7166 25961.5697 25961.5697 8386.1842 23383.804 14480.9914 5894.5292 57288.7893 7255.5333 14387.6862 11575.7538 14852.3615 4670.2363 23755.0455 11878.0967 15051.1807 4466.0679 13850.7751 13995.4034 9711.7716 12509.8584 54017000 catechol Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 15435.6945 8400.3775 3977.5802 4722.4459 95599.0698 4194.9741 4194.9741 6261.2918 3314.0217 2757.8769 10448.6678 8613.531 4764.5566 3631.1975 2766.6599 332748620 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7848.9218 2923.6839 6607.8604 2584.2729 4010.9143 4207.6118 2761.8773 2761.8773 8824.1163 18768.7342 3382.8158 8834.0257 6527.7945 7062.9627 34729.2263 7555.4638 18353.0464 302545709 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 6555.4572 43116.1598 5406.6696 11761.653 4398.7957 2339.8905 5922.1263 8449.2529 2698.8306 133211.9397 8640.0314 7761.716 3270.7195 3270.7195 4533.2357 11817.1777 5728.0522 8596.7439 6658.5194 13570.913 4311.187 3390.858 12855.8727 4062.2368 16640.8784 4489.1931 9435.2009 5303.4197 6808.8954 6579.0367 6483.7112 17313.2052 154162362 catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 5218.0523 18083.2045 17971.0903 3908.9901 4115.9981 3915.032 7738.0141 146849.8407 4783.8906 15034.0224 7199.8322 7199.8322 13945.2271 35525.7765 5700.3017 13863.7585 5574.6024 6157.9006 4273.5789 10068.6388 4967.4315 5634.8937 3248.338 291197202 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 12492.7961 333242.6351 9474.1202 10035.2406 6468.5915 7319.5497 2718.8711 6891.9959 8590.4042 11454.29 8688.051 13895.3143 7684.8495 7304.433 5212.4105 5212.4105 40396.8406 15590.4148 10769.0813 18598.4577 11342.6646 22274.1393 16262.4544 6673.9406 14342.8657 19722.8986 22466.5521 11035.5025 12519.3635 6647.4198 10618.798 7702.6879 4349.8647 15940.6313 87285182 Sir Sulfur sulfite reduction NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 4461.8414 19640.5587 153825.8575 36474.8282 5954.6454 9896.4818 253666.8714 5517.7851 14628.3885 11981.2837 11981.2837 25881.9715 6075.2188 9857.0892 3519.1382 2764.8288 25603.4184 3732.9519 32006.0869 11845.4473 8073.5363 3964.8073 6257.7865 12677.7315 2448.6552 18725.3288 270042420 cda Carbon Cycling Carbon degradation Starch Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 5201.4679 13029.8035 5427.8271 2986.4441 9384.9766 4011.234 11955.6773 62225.8957 7416.8485 6211.0627 4091.5758 4091.5758 7139.548 55118.391 4884.7617 101173.6007 22236.0751 7589.3035 7734.3797 5844.784 6833.8957 13059.6302 4071.0045 8355.846 3730.0108 16985.7619 4811.5576 2331.3499 6975.3164 254254044 endochitinase Carbon Cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 30991.9153 15687.4412 5034.1214 15951.1206 9318.1838 7957.0062 22953.8387 13514.7356 9940.6934 198807.8784 23274.4302 14818.0409 17763.687 9070.8774 9070.8774 10526.5144 26441.2914 14551.825 314698.7074 18936.4575 25237.5487 15595.6668 9929.3672 20263.7113 9726.2284 35087.748 22731.1311 16760.1069 7815.4111 10520.4982 15681.8354 9300.9287 30902.9084 160917615 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12421.7199 8913.7258 5831.9162 11211.334 12718.3194 12893.6509 19730.769 13068.036 9759.4654 9130.0289 11066.4535 138162.7145 6664.0017 15975.563 17628.4226 19228.2973 19228.2973 83960.2254 20717.66 71061.8628 30605.0079 45792.2746 38746.1929 23729.3097 10996.9186 34067.0323 11054.3634 51182.7185 20684.8669 16268.7286 8957.9696 13509.0563 17760.872 11932.5902 38827.4642 149908380 nitrilase Organic Remediation Aromatics Other aromatics Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 5903.9258 374732.896 8071.9446 3622.5619 2849.9323 8860.3657 8469.3194 3715.3254 1295266.6095 15259.5807 13687.135 5204.3498 6732.6044 6732.6044 5835.0497 12570.8837 6933.2764 13615.252 30880.2427 25701.4956 4125.0316 5180.9343 7580.5558 11626.9434 15796.2795 10978.3751 13612.4787 8624.9769 9437.9607 10144.7116 4928.6479 11297.502 290570097 dehh Organic Remediation Chlorinated solvents NA Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7120.0028 10260.7 6479.4721 4188.1447 22283.7624 11825.2339 78142.2135 5153.3583 97005.9054 24067.4718 17278.9609 10597.637 7799.9301 7799.9301 4902.7295 19207.6482 10861.4304 8813.7864 11402.9082 8144.4774 5505.7724 6088.7275 11588.7942 6025.2976 15900.8318 26053.0628 19047.4061 3850.234 8544.1331 15864.5663 4401.1936 10118.3814 75993811 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12357.945 30184.3736 8868.7966 11909.4623 10692.9124 5587.9644 17474.8155 38291.8705 42219.2041 169380.3773 38052.376 27620.8969 18175.591 8097.908 8097.908 8841.6791 22560.4654 15656.5577 12734.3098 25384.1594 9371.7257 5200.447 7896.6131 15708.2186 8637.2885 36250.5591 21590.0214 28574.9481 6192.0197 16379.107 18597.4387 7823.6245 25546.0841 222440772 nhh Organic Remediation Aromatics Nitoaromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 33556.3224 426533.3261 33686.3358 8847.9926 185101.4563 7151.322 4879.133 7623.2188 232538.7569 7928.9222 10890.1295 21526.78 15068.0643 15068.0643 6758.4354 12072.2778 7555.8901 23778.4366 14441.0221 8897.2922 40161.215 11918.3549 173952.7797 200625.4897 21262.7253 132913.0436 18882.6178 6992.752 12594.3674 5131.2032 63480.0309 14830.7785 114537966 SoxC Sulfur Sulfur Oxidation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9382.8911 5765.7771 7083.4375 12038.9807 3325.2069 5187.562 3767.0764 7396.4833 6868.8651 4590.9603 171593.9934 7315.8531 7478.1111 3899.375 3217.8448 3217.8448 6862.8596 17127.3268 13466.6529 9205.6477 14484.6179 11049.3915 6971.4216 6618.7891 12002.4019 6965.4783 28610.0639 9002.1314 13982.1059 5275.3236 7917.3285 8030.9599 4312.7432 15024.2603 325483190 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola CRIS 18C-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 12746.5095 14885.6011 1747858.2948 7241.8721 13294.1004 13711.6651 14479.1994 7180.1207 16367.7547 89793.2173 12113.564 665544.5081 17664.0211 38244.5034 12882.3166 10008.5048 10008.5048 11365.8082 22911.5097 12468.3654 20562.8826 16667.3437 31282.0738 5871.0265 10259.0257 26477.3146 49596.9134 39392.9905 11082.6487 17452.1214 8550.7094 10604.0091 9090.85 6852.4624 24905.8652 113526720 catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8592.2931 19848.6424 17570.6116 5971.2823 7343.0515 3497.6221 2325.8676 4885.5856 9787.5058 3868.3338 140509.5222 10952.5256 9099.0381 7479.3881 3411.8046 3411.8046 4311.6732 12263.6547 6732.6448 5620.8582 8021.6859 7389.9015 2854.7214 4477.9237 13126.6853 8255.4758 18144.6258 13983.385 12900.5574 4345.0578 6164.5102 4998.4876 3087.265 7290.0304 376252110 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium diphtheriae HC03 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 6185.9524 5005.6813 7012.9466 13240.6818 3751.545 3259.2882 5055.8353 4114.63 103825.4566 4671.6932 3893.5672 3778.4982 3778.4982 4435.3502 8263.784 6097.4085 6424.075 6115.1091 8163.8252 3855.932 2976.6342 7262.889 3409.8742 12083.9005 6915.6736 9174.9088 3174.9165 5245.6544 6724.2444 3723.9167 56670.3858 119409935 pme_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4123.1422 12763.8675 4891.328 3850.9887 19636.03 2711.0015 4162.6452 7522.7256 5226.5789 3402.2855 3402.2855 12536.9843 6533.3959 3852.8838 3433.5193 6373.3954 2477.1525 9520.4036 5864.5162 4678.2584 4738.9202 3403.7386 3855.1004 350635352 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger ATCC 1015 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 44144.453 6320.2024 8825.0312 107107.2274 10561.2558 17334.8584 10411.5421 44797.2972 9180.4277 252005.4274 9971.1465 10944.5501 12006.7274 13264.5378 13264.5378 6217.5121 32582.6785 13691.2875 36945.4391 47621.6908 8401.3571 8182.2552 57242.3985 19142.5776 11142.9348 22463.006 19418.4733 16587.3516 23533.4698 20850.8641 12720.732 17335.8787 44810.9598 256007525 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 790991.6491 207803.3659 361665.4141 1738369.8525 1739570.298 125049.8848 468631.7867 494313.2719 325900.9757 476280.0032 509959.6395 349843.8546 15641076.5933 561261.621 652704.1525 1573248.1113 581374.3629 581374.3629 314324.8811 614945.2115 308693.4397 682234.2703 702874.7437 1034217.5059 315226.4981 332891.6191 357723.6325 269106.9289 966527.2433 424587.3363 787966.9356 442712.7696 295915.929 416052.5232 336305.6593 606447.9856 292669956 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 29974.4666 42317.477 33312.7406 26967.3833 21314.8661 43876.111 57687.3782 28640.2761 65606.5181 24864.2362 20631.4614 1004873.6208 12602.0317 34877.2398 12203.3779 10876.4888 10876.4888 11649.3871 27946.1691 101875.8973 19913.3156 12226.681 10376.959 13714.4922 13250.2098 30059.0045 16820.741 31147.0144 10932.9495 45451.4485 10666.4724 48413.0216 18461.5163 16862.6627 15695.0029 46810965 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 8443.0713 11291.555 16899.7332 3255.8254 5131.3745 4125.3048 5461.6584 5091.5508 5670.9506 4899.1471 6832.8928 4911.7598 4911.7598 3308.7424 8840.195 4677.6697 4731.3838 9179.3983 3152.4816 16850.6885 7610.1432 4844.3264 13425.0139 12571.9342 13166.0135 2674.6682 3644.1481 4683.803 3744.1139 5216.5225 291556981 amyA Carbon Cycling Carbon degradation Starch Eubacterium siraeum V10Sc8a superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 14353.7851 11422.7677 5528.7602 26232.5986 7850.1729 8155.7659 12380.762 9813.5991 8448.4672 12053.5464 8805.4183 164140.7719 11064.5566 9354.8622 11006.295 12118.3457 12118.3457 7187.8354 25572.8703 15199.0592 12498.2338 11265.6595 14443.1566 4694.8852 4710.0963 27514.6337 7953.0252 26865.8956 10507.5838 13753.1453 5911.0749 8761.2904 9060.9807 5293.4208 12391.1915 344039237 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 381381.2111 54529.6383 14140.1261 24834.2256 7851.6736 16653.3986 34964.8605 5894.9236 37166.7585 39506.9226 21156.6808 707070.8457 38458.8812 49758.2329 53492.0121 49384.8105 49384.8105 119446.9025 30499.59 28755.2304 21214.5361 194085.9414 26111.6854 12608.054 16473.1964 27224.8975 41284.2154 94168.2953 97990.7924 44574.1292 14060.3506 36104.8068 44711.0742 67122.5768 75612.1732 307544223 terc Metal Homeostasis Tellurium Detoxification Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 4409.852 8499.6451 4480.5825 14224.3803 4222.1709 6914.4597 7314.5963 9080.4558 9708.8137 12464.2231 12464.2231 3742.3841 8723.7182 10286.842 3836.0783 11723.2134 16568.2094 4826.232 40833.064 31407.3666 42738.9788 11155.282 5960.6192 3886.8622 17697.7158 18776.2868 4300.3687 378549009 ppx Phosphorus Polyphosphate degradation NA Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 7821.149 5073.5712 4881.5548 7734.5672 8742.3041 6259.5304 2846.0018 5628.4601 9858.4805 7519.2023 3946.1022 59709.8103 6525.144 8237.3538 6289.4287 6289.4287 6121.0167 15248.0819 9099.286 13617.4891 8855.8983 12988.7969 3614.896 5151.8925 9798.3875 4865.0652 17270.9631 11119.5468 15600.7009 4855.8337 7763.4838 7467.1854 6006.8772 14712.4822 90903263 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4511.8602 4689.4166 2208.1586 3694.7784 3780.6421 3007.0245 6930.8791 4021.8835 3143.8807 3143.8807 2775.9841 6275.4514 6243.4118 4996.0524 14272.4408 7138.6027 2873.6929 5870.0969 4042.143 5115.5507 3980.8353 3054.541 3581.2295 2465.453 161485963 catb Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 104573.2972 35982.401 6154.4485 17414.2465 34445.6313 13535.9138 10299.3751 6593.7252 10979.8152 7613.0418 20911.8632 14276.6369 128484.9958 18047.2228 8408.2602 17506.1184 16931.5056 16931.5056 7031.4463 20704.9204 6787.0384 284314.0183 62413.4123 18725.0576 76985.6153 6876.6688 13074.4352 8002.6829 23236.0668 27385.4864 43031.3468 7609.7142 12469.007 17752.7084 11920.8981 13724.4499 383933729 FBPase Carbon Cycling Carbon fixation Calvin cycle Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 12564.045 8345.5995 19728.2944 6393.788 7134.2402 8118.0699 52534.1571 13632.4573 12403.0403 8049.6393 337594.8476 9716.7946 77084.4154 3392.8928 3392.8928 7857.0659 17176.6365 7716.5324 15642.6843 19320.5945 18566.3194 9367.2468 7095.9028 13197.1667 13387.1376 28094.2974 15827.7197 19895.3655 7183.8408 6745.2109 10043.2436 4924.7129 40603.4964 167668104 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 117887.4236 17663.0158 7812.33 11529.023 10827.8316 4367.8376 4133.1049 12889.2961 10955.6272 13033.6547 21770.0047 9166.4529 967348.8162 15435.1616 8741.3946 13399.092 11714.8373 11714.8373 13483.0302 22318.9993 8987.1595 21510.7663 521488.463 12653.4658 6395.6321 9368.7857 14536.164 8146.9846 22006.1713 8767.9193 11439.7087 8256.0741 6470.7759 21333.289 3790.0485 11107.9963 83836470 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 14815.9487 19114.8681 9392.5307 5385.4928 16790.5021 4599.314 7182.2013 8997.1238 6300.6178 13864.1205 9209.2333 11789.1983 157213.3883 10764.3243 8930.3748 10293.8539 10058.6882 10058.6882 5310.5505 26124.024 10084.2247 9175.5406 30190.6771 11158.6739 15789.7355 9302.6755 16635.1508 40281.1552 27897.0137 17052.7478 22461.2703 8231.6426 24064.9737 19935.0422 6525.5184 13107.9726 167592096 ppx Phosphorus Polyphosphate degradation NA Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 37737.9507 11738.7271 20206.4744 51963.604 29978.9922 27408.7457 163718.3622 46696.7734 23690.0012 16758.3591 9989.8038 436131.2988 29092.3978 24716.3007 30687.5022 19342.0068 19342.0068 17148.2818 23232.3236 19995.1551 44777.7685 17960.6001 29247.9765 359039.2016 31142.0331 31236.067 9707.4794 37892.1798 41880.5796 38593.29 12132.455 18475.8918 19359.9467 14047.5603 28186.9264 297629991 chitinase Carbon Cycling Carbon degradation Chitin Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 9356.4954 118517.7002 13345.8046 69070.8789 4112.9598 15290.0889 14319.4904 7641.2426 4037.5326 126303.4509 4932.3649 5799.3638 5011.2737 5011.2737 4755.1484 10911.9452 7636.3747 5832.8774 11926.2814 9220.3027 14927.7882 4717.7152 17284.2663 4736.7388 42021.2004 8772.5866 11053.8295 3638.3192 7901.5086 13271.6334 4836.6668 11277.0041 357031438 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 10145.5344 39184.1674 5392.4915 8940.0104 9841.6397 8862.9384 8671.0019 12028.1804 8107.7592 21986.7009 11678.6011 7336.2962 167297.6996 11508.8164 7853.136 5995.805 10385.2583 10385.2583 9909.8139 15054.4544 10060.4705 15211.6046 14833.498 13624.8587 5311.1107 13608.4735 12121.423 7273.1609 26137.0814 8379.2818 17724.1101 4134.4361 12143.5196 10189.6587 9807.7636 24209.0707 374421203 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 175145.994 40562.5344 101611.6697 206221.5292 289028.4661 113301.0865 44419.828 62678.6075 80463.4632 87226.4328 274596.8657 126955.6501 1966660.9559 222406.9802 140093.3868 133138.4407 210069.9892 210069.9892 203792.9007 107937.9938 93553.857 257601.461 147619.1493 577636.289 58787.9873 101700.0922 178235.8891 105264.9031 285800.8138 235198.4308 177380.4377 67593.0891 132357.7315 90593.7853 67732.9992 263944.2239 118018608 terc Metal Homeostasis Tellurium Detoxification Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9904.9107 589545.7914 97337.1286 20847.1529 2059.4177 3414.7335 17921.6715 9139.4115 5375.2808 4610.3944 101188.6397 12306.4873 8062.0432 7792.8449 10937.1069 10937.1069 12157.5253 11206.5535 6539.3081 8763.0117 9450.5807 7224.0034 11953.2942 9143.1992 5927.7802 31987.9203 7302.196 10922.1557 4012.795 4533.6893 8613.3037 3460.4584 6182.8793 313897086 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 11878.7087 31875.4873 7586.8862 15417.896 44192.7823 25675.5686 15492.8374 57998.7302 13523.1316 20227.3297 20475.8187 25223.7807 464311.6707 24488.1058 16161.0476 89780.4549 21176.4167 21176.4167 11706.2432 68271.5454 16198.2811 41358.2878 24902.6821 20716.7558 13973.3944 38288.4459 21058.0984 19693.535 40740.6762 38295.0211 26405.0469 16570.2021 14113.0927 31884.6286 21074.7652 1291567.9249 344224503 atza Organic Remediation Herbicides related compound NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 19293.8543 6024.1429 11871.9962 4658.448 11887.9706 6830.4092 4135.2732 68053.6522 6518.778 10320.7006 7599.2895 2766.8674 2766.8674 13020.0962 8965.4214 3658.7123 10285.5976 3465.0012 4778.2198 20257.6609 2710.1741 13134.6792 7516.1492 6381.7659 2348.6638 10384.1402 9070.5635 5022.1118 11887.5979 376396403 terc Metal Homeostasis Tellurium Detoxification Klebsiella oxytoca 10-5250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 4377.3176 14325.7791 6134.6758 4882.2854 521340.5195 4965.4702 9445.6061 8445.3272 10271.6037 168699.7941 4742.6575 11115.4547 23409.9555 5884.6036 5884.6036 2963.029 17252.1579 6240.9611 22237.9675 9517.9635 7584.4413 5188.8116 2916.9202 22406.2803 32200.8052 33727.8813 4677.456 9865.9388 2669.0423 14838.3574 10978.4987 5024.785 6328.4772 383703658 amyA Carbon Cycling Carbon degradation Starch Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 5387.156 5293.3369 12075.8008 1996.3028 8299.8466 2767.568 2951.8497 20217.6787 3745.1929 107890.045 5609.8211 5680.3927 4140.2155 5869.776 5869.776 3818.2747 9745.5234 5788.1557 7011.8539 8318.3438 7979.4306 2359.5823 7080.0602 8570.0648 7893.1181 12854.6337 5257.5474 8024.518 3311.4382 4413.0225 5205.9237 3389.6217 6774.4943 90420163 terc Metal Homeostasis Tellurium Detoxification Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 4565.1673 237651.3505 20217.8126 54368.8514 7197.7281 4232.1586 19095.3823 7761.4713 18079.7671 15188.3903 15188.3903 2751.4272 9963.646 4561.0058 20858.3288 21379.4615 9058.0526 8462.4812 10328.4034 10496.973 5247.4007 26843.1067 18970.8031 3324.1456 39934441 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 19859.278 11877.7965 11083.9196 19669.9742 7498.9162 12126.6993 14188.2502 10664.8743 13665.3054 28738.2032 18679.1247 659575.7471 27315.6626 16571.9691 20172.1359 12063.4227 12063.4227 35316.6768 30349.5752 22922.7086 35588.8357 32572.3167 32119.9835 14458.3757 72162.9733 24096.644 10020.725 64834.0668 25786.6028 30760.0114 11513.9371 21807.0411 20923.6932 14655.248 25201.2947 118703293 nitrilase Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 568371.1963 71404.3795 322503.493 113782.7583 658906.0472 762813.3338 145507.6788 505207.3395 267919.4558 274279.3951 372769.4851 273824.9672 4556584.1986 416065.5611 380363.344 567113.8585 402610.964 402610.964 373268.3201 330066.6077 201293.8026 928646.5317 332731.2555 361379.5925 192994.8934 284383.8036 370969.0416 244404.7679 588789.3615 406984.2978 357380.0857 204603.3525 179074.7568 246331.6332 147277.5784 500386.3639 358753659 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 6043.2099 6868.4064 2198.2152 2597.6916 6145.6443 2721.8453 63239.723 5113.3681 3856.6078 3465.3741 3465.3741 7144.886 4791.2477 4386.779 3815.65 2967.4497 2890.5037 6625.353 2716.0119 10620.8721 8337.0343 9365.2249 3644.1881 35111.0791 2109.9317 10917.7465 260421400 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 13482.6424 13894.3093 5552.3295 3624.8495 7670.3843 4567.772 59619.6153 6327.7105 417289.066 13201.739 4902.2267 9839.7062 9839.7062 5187.4741 78748.7119 5962.341 13466.8566 17694.4301 5981.2139 11426.3559 27115.4797 6445.3983 11593.0054 12743.5969 5340.5311 7958.0191 4179.0261 10185.8692 80075.3833 35275.3772 7446.8493 227238298 gdh Nitrogen Ammonification NA Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 16738.1083 24624.8532 5191.9035 4745.9544 80189.256 34490.1716 42593.0504 21643.906 16441.4912 260708.364 20051.1822 19357.2213 15702.6734 15702.6734 9442.0861 23284.4678 7846.6183 10689.7476 15513.503 10563.143 11218.9292 12867.0989 11211.7119 13080.8161 58542.5011 28749.9672 18870.2027 8625.5443 176358.5168 18206.3946 27311.3171 232455.7176 83837939 mer Metal Homeostasis Mercury Detoxification Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 9896.0998 8331.0538 5391.4056 3768.39 8016.4117 15215.0225 3881.9501 146913.5431 9906.3554 8412.6851 4686.4319 4686.4319 5011.9377 11880.6517 9808.5622 6881.8127 6498.4754 4662.2477 4076.4291 6540.0303 10259.9145 5433.2749 24134.558 14791.8426 12806.2592 6143.7439 9447.3383 11556.5691 4778.5351 9384.9462 224602465 urec Nitrogen Ammonification NA Lutiella nitroferrum 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Lutiella;species:Lutiella nitroferrum; 173107.2713 49664.1806 365897.004 170051.9943 104702.4863 25689.8631 433534.9665 149858.0374 247964.0442 139659.8987 175357.9117 126084.5815 2943961.1868 362290.7779 246548.0233 410192.196 207871.693 207871.693 141624.7988 212932.2368 116090.5672 287344.7362 271397.293 204783.455 267545.2387 121831.1708 143337.3125 118089.3175 326404.9578 189162.289 201263.6123 90499.9647 143104.6788 171855.5982 125714.601 1071123.268 328880150 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 35408.5537 7509.339 8615.3573 3596.5562 4351.7526 7949.3004 10669.1833 16145.8469 14872.0889 898115.618 8819.0498 12388.9194 9459.4635 6538.0193 6538.0193 32000.249 19598.437 7193.9168 4728.4618 9051.2118 14890.1424 3877.8215 9463.9963 11679.712 5737.6517 22365.7124 26851.7301 13013.1225 4786.1099 18504.008 13319.107 3953.0072 14773.4978 182434357 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 20874.4355 12265.2511 7141.3543 9561.8751 10747.6037 8781.4113 8027.3481 10222.8236 18124.5425 10784.6207 4957851.7967 20022 12097.2817 17128.5115 13523.1298 13523.1298 9798.7796 24565.8329 13415.747 12238.4083 25564.9427 15101.6848 7112.0034 11299.5861 15089.8642 9498.7559 62322.5441 22055.5302 18250.8344 6981.6996 9706.3264 10609.9125 10005.2062 19038.9441 221726276 terc Metal Homeostasis Tellurium Detoxification Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 23076.0275 12128.3173 7089.6578 12464.7579 30044.3107 4193.8766 12336.2333 15749.6822 6432.5183 15599.914 28653.3762 14160.8758 253906.2719 16415.8878 17744.9941 30468.2417 11571.2574 11571.2574 10884.645 22979.8746 15474.4115 14311.0306 315624.236 16639.6527 8469.5959 12742.4472 18252.8101 9962.8587 45580.7596 28895.6105 23372.566 14204.8586 12483.7282 15882.6208 17513.402 14361.3958 226834715 cellobiase Carbon Cycling Carbon degradation Cellulose Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 27103.161 6853.5502 17792.7482 91888.1192 8452.0595 7756.5222 24217.7842 4406.8466 195621.9742 38424.3828 34812.8729 163752.0432 14678.1269 20660.1804 14078.9067 10129.0055 10129.0055 16144.7719 36292.9942 18659.0811 25036.5718 21694.8053 14794.6817 12258.8089 76673.4794 33969.2371 9190.7167 114549.5204 41398.6049 28270.8628 11800.1219 17935.1341 10225.0579 5511.355 12313.7159 407761832 nahf Organic Remediation Aromatics Polycyclic aromatics Herbaspirillum frisingense GSF30 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum frisingense; 39065.0429 8087.5373 9747.0136 25780.3922 8571.2761 7875.0639 12716.9541 17389.9296 40367.5582 23414.7908 30276.5411 571328.1066 13351.181 16203.3029 25308.6458 33126.2531 33126.2531 30073.9909 116562.1863 24784.4151 20902.2731 72140.9659 41632.5468 17370.8727 24932.5524 36731.9864 21007.4127 43221.5662 48986.8684 46546.9897 7982.6824 13764.2614 21161.8045 17073.0773 45772.7801 334137642 nirb Nitrogen Assimilatory N reduction NA Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5162.2918 5958.8896 6632.4813 14259.8213 7475.0208 7023.919 3583.6802 85896.8461 4075.0826 5247.4272 5346.2315 4044.5427 4044.5427 5569.7831 10843.61 9691.2915 6203.4289 12288.5812 8565.238 5229.453 5611.5418 9584.1807 2680.1023 31578.468 8205.8676 9053.2022 3439.3079 6254.4559 5905.8225 3341.2651 126248657 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 6060.0765 3538.1772 7733.2318 6860.2356 3350.8732 6626.6868 4315.3214 120951.3903 7698.0496 6932.419 3330.2748 3330.2748 3547.3793 16418.8877 6089.2998 3545.3899 6956.3711 2203.898 3457.4636 8314.6161 9182.3852 3462.4063 17797.9093 3723.0366 5712.705 6145.5644 5530.7031 5371.9702 48527134 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 6690.9293 6658.1046 3111.1456 6710.2452 2347.7631 76040.1754 3991.3451 2974.6968 9408.7439 4213.0397 5629.008 5707.1946 3393.6372 2563.6033 9095.9008 4609.92 2819.9943 2467.5737 3614.5881 1833.561 6245.4169 159173130 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10625.6046 4429.8055 3222.8047 6355.8744 6324.2786 20804.7951 15496.392 141039.6335 9341.999 90271.4916 4541.3559 3682.5627 3682.5627 411327.8214 17712.9715 4576.1124 4015.8056 8446.3428 10074.3868 2377.1881 4502.5853 7384.8024 5487.2561 11367.3261 4737.3196 19037.1925 4074.0417 5906.972 346100.062 4394.7743 9819.7127 118424478 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6712.44 4103.6328 4691.5899 10236.7487 34734.8812 8015.907 2857.8152 96018.09 6070.1311 5074.1405 5074.1405 6011.595 6547.8856 6324.5821 5980.1777 3172.3452 2696.9732 16450.0663 4473.4113 8639.8286 2888.4008 5753.4719 7090.7554 2894.7973 11281.5655 58219335 beta_agarase Carbon Cycling Carbon degradation Agar Pseudomonas sp. ND137 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6644.2967 13428.0495 3605.0318 4948.4189 3714.366 3391.7346 11237.2641 59184.3985 5469.6389 12625.5934 12625.5934 2671.6681 6592.036 5913.8142 6286.8217 12059.3737 4781.4388 2213.0162 2919.2036 9775.3156 23372.8176 7892.2026 8092.7831 2909.4601 4820.9329 5454.2773 2482.4391 5216.5646 365425550 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 51471.5422 55222.6514 45883.188 121801.9718 15252.6529 18485.2948 9165.126 24333.5803 47630.9623 35723.8422 63150.1302 433814.8766 27459.7926 93646.2137 37083.7835 43261.294 43261.294 38116.1895 68828.6727 31954.4593 164864.2437 66446.1785 31675.2194 88374.8717 42663.9853 30323.4507 107702.9263 82634.9386 126552.1783 40968.4303 55692.4115 28881.8079 45901.4675 36875.0072 133193.0563 261405524 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 28859.6637 22027.4495 136872.6512 31567.8689 7120.2518 30465.648 152440.0491 15888.8405 26110.9777 27234.7823 11901.1716 669830.4326 49378.4067 26799.3952 27275.6144 15395.2011 15395.2011 20577.2973 32782.2055 27733.9246 194000.4161 32636.3182 34814.2318 15556.4462 19995.4842 36249.2764 12921.2497 63659.6468 29510.0661 33923.8567 15474.7279 23898.185 16060.954 15320.7888 162559.5753 381165047 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 362783.587 48364.8578 101909.6849 111186.2283 120144.4531 88098.0605 257190.5283 310150.3649 332917.9764 159810.0245 231011.2091 139724.3352 6133494.5158 345812.8647 241081.7578 584024.3906 274754.32 274754.32 118387.3915 277191.1895 169829.0862 256007.4761 315227.0866 239957.3151 123023.0257 278091.2364 165291.2984 197109.183 715235.7777 151737.1909 276246.1982 396331.5713 228604.4053 211515.6678 132036.9496 328115.8207 226309080 terc Metal Homeostasis Tellurium Detoxification Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6533.3179 19419.502 28756.4887 10685.098 2375.286 7136.9944 3665.4053 86254.5308 5041.1041 4721.1783 6375.703 4161.7401 4161.7401 10563.7989 7383.3489 5685.0337 8239.8428 6749.6321 2597.4 5279.1862 9664.4256 5155.2786 9044.7027 5908.2601 10175.2674 12724.6847 6280.3689 6065.8312 3971.8523 7480.9049 89473928 nifh Nitrogen Nitrogen fixation NA uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 4811.5349 35758.6672 7920.4839 8291.9035 4586.0105 4327.0279 5551.3917 75675.9984 12612.9978 7048.8268 7543.1036 3559.7911 3559.7911 2892.5952 10801.9306 7900.2886 7735.1174 100910.6933 7685.2441 4952.6961 6160.124 8994.4016 7827.3617 20726.3261 6880.5318 8957.9622 4629.0956 8595.5218 6954.0222 3885.4734 7405.2553 313623192 chitinase Carbon Cycling Carbon degradation Chitin Listeria innocua FSL J1-023 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 7512.5298 5485.7441 64887.0261 5344.0607 4761.9356 4752.7017 37639.6196 37639.6196 3163.3561 6696.7461 4382.7406 8440.2914 3592.8371 5889.1838 17896.7995 12683.4412 7293.5724 7562.1252 3035.6516 3746.4844 3955.7578 5048.4334 9712.7473 345852777 one_ring_23diox Organic Remediation Aromatics Other aromatics Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 8405.2009 8058.3259 88471.4901 6058.9671 12964.7011 11300.9181 4952.5908 15191.1124 10741.4116 9172.461 106710.6506 17064.114 11448.2521 14895.3601 9141.0863 9141.0863 8281.4681 24196.6303 9399.3653 10509.2862 9291.8872 19536.691 7982.1074 7461.5772 20359.6132 5944.0075 24122.302 18791.0015 26550.3371 11783.1572 9816.6663 14465.5582 35337.4123 5694.695 111058824 pec_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 17127.9888 9894.1604 9833.8865 17970.8664 7897.2347 7189.6302 14367.6484 12788.5693 14506.6057 7213.5137 170443.3967 15098.5751 9635.7352 14124.8782 7411.7287 7411.7287 9239.561 18116.6214 11051.8642 73688.5974 19855.3293 15506.4658 7950.0488 5071.2039 16707.5958 6307.9964 29302.3597 9275.6972 20094.3174 8357.8326 10967.8209 8096.325 8480.2057 20574.2766 375108807 xyll Organic Remediation Aromatics Aromatic carboxylic acid Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 9614.7081 5184.8242 10790.9135 19662.5703 7763.3328 7215.7659 4505.8562 5197.0168 8216.0272 7065.1194 170508.0479 9987.1181 6035.0106 8177.5615 4111.9844 4111.9844 3634.5543 15277.8443 6415.7427 8024.8073 12757.0144 5859.8263 3819.5298 5666.3433 13571.9916 3991.0735 12442.0331 7357.722 12278.1641 2939.8605 5565.0741 7908.156 3694.7986 13620.6777 330402486 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5729.9179 13655.1763 6654.9267 5240.8299 2752.1519 2804.7466 3716.7235 5485.1468 74349.3145 5512.2797 8147.4096 6237.0504 2805.4683 2805.4683 5517.9181 11080.6607 8569.0018 6791.5274 7778.7919 4298.1982 2453.6097 4355.292 10154.4458 3134.8837 11823.4289 6934.4148 8110.9324 3640.3862 5322.6792 7820.5845 4722.0297 9641.4061 363651033 pme Carbon Cycling Carbon degradation Pectin Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 25205.6763 20161.1077 28708.4174 73566.8357 10142.9236 15744.9236 28523.9844 23892.345 32161.3245 19006.6574 20258.4488 371167.4614 34527.8777 26958.1855 25659.1952 19731.3185 19731.3185 19063.4273 36138.4416 20910.3514 136933.0821 34776.9613 36682.6831 16621.3752 17896.5255 27149.5245 17725.1151 55452.2831 14411.5584 28942.0385 12082.1499 21892.7487 95298.3384 13209.9688 44053.6956 255253055 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacter italicus Ab9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 9118.0246 4658.9654 10352.68 7740.5456 4680.4725 5176.2169 4277.5184 7932.1103 8440.0341 3954.5573 217551.1995 7569.1491 8310.0959 8556.8306 5660.2465 5660.2465 6881.4402 14819.9242 7639.1791 11873.8423 9794.5256 11301.9714 5886.4498 3992.877 9812.3388 4137.6444 16258.3161 4165.939 10567.823 3339.2284 5214.7445 6468.6167 4311.3726 13583.7818 373546518 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 12461.9387 10427.5051 24731.2886 14148.7859 13870.1491 37440.9019 13234.7391 12408.4422 13126.8763 28265.6302 420184.3658 15227.9194 13712.4049 12844.1008 37465.1586 37465.1586 10544.2827 22039.7826 11074.9635 17699.2434 14217.3136 12991.1018 7445.2699 8699.7557 14867.8797 12821.1024 32298.8414 9628.783 24854.0202 17777.9301 19272.3504 17971.9049 12808.3944 131456.0214 76261091 terc Metal Homeostasis Tellurium Detoxification Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7139.3906 17120.1447 3750.5936 39208.1033 5902.9921 2319.1984 2319.1984 2787.2653 9150.4388 4875.2604 5808.3826 7863.4415 2738.439 3264.1341 2743.3244 8091.8717 8468.4733 2843.8868 4943.5879 24510.6376 2953.6881 5078.1884 386420628 ppx Phosphorus Polyphosphate degradation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 9984.6071 11858.9656 33835.0363 11702.0015 4928.03 79392.5205 8070.1457 86959.6448 149265.796 7980.7651 8813.2422 6816.7738 5149.1525 5149.1525 8298.8108 14506.2 6900.0079 26376.0729 60390.2223 27520.1175 8663.6806 8123.8368 10312.3734 41638.3918 19144.339 15509.4925 15918.6762 70220.1305 8228.0663 21595.8947 81025.3353 50700.192 118424524 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7580.2787 7879.0209 22972.8756 5903.7551 4784.7101 5899.631 32777.0361 4726.4637 8542.4122 27113.8758 210333.4836 8752.5212 10732.5025 47613.0908 23696.0924 23696.0924 6870.7428 18105.1847 5810.4596 7241.6482 6539.7612 6065.8656 3099.2176 12916.4664 16657.5357 49258.5856 26976.2912 9278.0797 14647.6734 3377.8462 8424.854 13444.2814 4993.1338 8269.3809 378747734 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8047.2618 7994.6149 26295.5884 5101.2727 4645.4488 5347.9374 34482.0524 79726.2767 6727.797 8614.6211 4726.7752 4726.7752 8486.1296 13877.8178 3616.2698 2438.2703 8561.2324 6374.5539 3303.7427 4588.6777 9229.7939 120593857 pgk Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7055.8659 8534.802 8132.16 2621.7026 2491.5252 5439.4234 4273.844 26032.2432 2630.3393 66773.7813 4187.2897 4229.7023 2903.9667 2903.9667 2450.5946 5595.7944 6187.7553 2294.6443 8426.5679 6083.6807 12971.2109 5186.0344 7474.6893 3288.0259 3124.0004 8147.5156 6259.1819 282566724 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 5234.2916 5445.249 135942.1332 3866.2447 3781.627 8569.5485 6567.9004 6060.4283 7862.5075 2867.2912 4496.664 7919.2608 3245.057 3571.6675 3935.4927 83814888 endochitinase Carbon Cycling Carbon degradation Chitin Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7238.1048 5599.3608 13477.0445 9717.1292 5843.9952 16247.4924 20262.1686 3893.4251 111597.4808 8368.1302 9066.5094 3984.3018 5679.337 5679.337 3610.4686 15742.4562 9148.9489 7413.858 39526.3221 6646.7507 6857.6544 4763.7491 8878.6486 6601.4919 27813.8845 12862.7807 10488.7885 9508.1813 7117.6871 10081.7178 9542.7889 8813.0098 259022373 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 232485.4759 13978.5692 168517.5494 32060.9344 118802.716 78212.0371 51311.7792 104026.2269 80090.6864 204786.0637 75325.5894 91807.287 657465.7476 132194.9782 42573.6123 147319.1981 84638.3409 84638.3409 49263.7471 115202.9834 53722.48 137056.1909 96163.3531 217701.6231 87476.0939 65575.4921 483744.1873 53571.2962 223060.5607 308145.8063 163494.0117 64248.8058 61856.1688 103557.1402 37032.5321 136612.6825 341937270 pme Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. raphani 756C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 47197.5397 6315.9287 9711.7628 16844.9487 5939.1837 6064.8043 4685.6313 8856.5034 6522.3889 15713.2192 12157.0528 218216.7896 8482.1919 26569.2988 29788.2239 41846.7251 41846.7251 12197.0393 27716.3447 12447.0799 9136.149 21708.9747 9726.7643 9064.9283 15535.8437 13224.2156 22180.0821 42970.1744 27850.3016 17377.7068 16175.6288 19596.889 15795.2823 17291.2544 15993.0028 357941878 merb Metal Homeostasis Mercury Detoxification Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23631.0088 10135.9044 12969.3436 13194.3472 13540.9534 8832.4356 9417.9455 17510.3076 18087.5769 8754.2521 448003.1757 41095.556 26908.6717 10807.9588 12166.6203 12166.6203 11596.7441 23930.2093 16629.1846 13591.4081 20597.9814 30397.9938 12124.5484 8657.7671 30606.95 10947.4085 32165.8001 10912.0735 28574.5769 9888.6766 13004.1603 12544.3695 11006.7234 25647.0408 336120402 ppk Phosphorus Polyphosphate synthesis NA Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 5106.2526 8121.7501 1724.4586 4339.6719 4023.1145 3650.054 4617.0734 4493.0234 6365.3487 2826.4074 2826.4074 3477.7718 8663.1571 5243.5502 8689.1213 4508.9163 2536.4525 2092.9821 5370.0026 2459.2887 11363.7084 3670.2089 5718.04 2548.7126 2918.2292 11756.181 1892.011 14867.9604 195975077 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 4204.0742 4206.1104 3714.5047 3161.6337 4780.4555 2714.8651 94351.9591 5225.1155 3603.7777 6979.8216 5886.0884 5352.6867 4403.0659 3787.4579 2994.2779 6502.3287 2359.2952 9267.655 7331.6602 3530.6812 4879.1103 110634762 amyA Carbon Cycling Carbon degradation Starch Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8062.8326 27896.302 2580.773 9216.7815 3671.5659 10573.1753 8705.6055 10466.8225 170826.2372 7471.6456 140161.1137 671499.3476 9646.1942 9646.1942 2779.281 11903.1565 13693.7456 402720.7152 20236.0653 5676.347 4209.0825 7506.7759 9798.1272 13890.2267 19255.5025 13217.9251 11539.2365 9066.4486 13271.1934 5519.6461 7187.3138 9518.828 260423426 catb Organic Remediation Aromatics BTEX and related aromatics Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 21241.5218 16218.3818 4292.8817 8745.8298 5951.4097 12703.0856 6465.7256 57502.9856 32288.375 305159.4948 5942.8365 7455.1689 78784.1147 14220.4741 14220.4741 9924.3725 22469.1766 6002.1429 30509.9211 19837.368 10728.9248 5661.7147 8762.2363 9275.5452 13649.2576 21823.9053 9001.1585 24854.6851 12052.5668 11912.3624 8488.6258 12360.7193 12086.3915 133910474 atzb Organic Remediation Herbicides related compound NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 6632.7174 155898.3734 19247.0871 1772.5068 4323.4353 4772.9528 4759.0992 2209.5514 89349.0499 5115.8164 3461.4171 3461.4171 2667.5114 12251.5519 7109.8469 87040.8802 8268.0282 13347.815 20691.7711 3511.7826 5525.4462 2515.3426 8891.5706 5890.8393 8709.6259 1844.4923 5584.8616 4837.2979 3525.6937 6255.6497 357212661 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 157175.25 43670.5301 48635.9604 936600.1801 22536.4819 5724.6412 31680.6234 48532.2726 101107.3238 52145.1001 105177.8628 113365.535 1209188.9165 192520.2756 24723.3238 30626.3381 64126.3862 64126.3862 139146.2063 429926.2236 191544.2242 249087.5904 58302.5009 1033407.4065 116533.5792 173436.7752 25615.245 206571.8528 226276.8286 156083.2451 86876.1136 36075.2625 352494.4682 94340.9294 182697.7285 502769.8255 169861071 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4836.2765 32340.4541 7382.5368 11301.7272 5963.6397 7486.0856 4916.5697 3047887.9732 7230.8078 6940.083 5181.6733 13932.814 13932.814 2887.9488 9769.6162 4517.4988 4714.8257 3152.6252 8256.3911 6939.028 11354.0113 18233.7489 7069.5186 9622.0399 3647.242 3783.6282 6135.4472 4012.2638 17249.0552 284017357 ara Carbon Cycling Carbon degradation Hemicellulose Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 9089.9234 8240.7638 5063.8167 27858.4015 11622.3497 5500.1662 10113.9882 9292.847 12198.1829 4894.6327 222652.9204 10825.9158 9862.5754 6203.3318 3910.9698 3910.9698 6827.3535 15885.8756 9185.8267 13877.4725 10035.6676 13428.995 6026.3092 5215.2663 13662.7058 4447.1417 18116.8916 10728.7989 13618.6386 6027.6915 7062.0229 7614.8177 4405.5255 11735.6877 256558359 urec Nitrogen Ammonification NA Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 14512.4698 7696.6867 20895.2349 4082.8378 16549.9161 4322.1349 7357.9798 3248.2773 78752.788 4103.0833 8812.8183 6457.1302 4188.8285 4188.8285 4667.7326 13824.715 6902.0407 4368.9208 4644.5406 7712.1414 2508.1332 3085.7357 11101.205 3426.0945 12163.7646 6876.3354 10339.4186 5065.1391 3653.0937 8964.5265 2911.7441 7950.8838 315279860 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 17084.0653 25524.5579 5031.2576 8118.6714 12262.0294 23856.1185 42965.3734 46362.5504 569076.4932 12931.5001 169612.3996 39096.0126 26476.3648 26476.3648 11074.2612 23730.1112 12879.6039 12330.9104 46581.8915 8421.6689 13036.0222 13189.1578 31298.1564 15202.9475 308148.6607 87516.5871 31820.8566 9544.1431 13053.1654 21090.5044 11804.1162 17251.2151 333984318 fccab Sulfur Sulfide Oxidation NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 15267.5159 25719.2627 12589.5657 20310.5123 12514.505 6387.6141 14740.7844 11891.4677 6778.242 11472.4274 20101.3328 15627.3573 338513.9279 24961.1293 20988.3974 10121.3982 21487.0263 21487.0263 13039.94 25432.6493 13856.1298 16820.9306 21195.0301 65623.8812 12462.136 10795.2544 21346.5526 93842.1221 36120.7226 13247.927 22661.773 13370.4158 11265.0549 8897.0786 7831.9095 56774.7504 159477197 nitrate_reductase Nitrogen N Assimilation NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 13779.1038 11136.8252 6043.5486 12143.321 5517.7356 45889.4184 15440.0517 7094.6102 15077.6407 11875.0076 8187.5022 332570.4097 18376.5816 14526.4798 13207.8536 16613.7624 16613.7624 7676.7203 28401.2173 12315.9544 28289.7591 12923.4718 14344.0604 7019.0095 6947.4806 16911.671 6805.134 266056.3391 14717.8493 18252.5264 9899.8367 11007.3512 10804.788 9920.5059 19991.4201 354581730 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 12573.0229 5156.9212 3170.254 5226.2943 676580.8402 2826.3362 69136.2949 5460.2374 9610.0985 12796.5172 3100.0661 3100.0661 3947.4152 9075.4768 4793.9063 7908.0734 8235.5805 3319.0544 2983.4066 6963.6608 5233.8391 24436.0697 6863.5204 9125.4761 2732.911 4110.8775 5480.8182 2493.0564 7646.5203 209401786 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 85531.5166 16460.7395 9616.354 21150.4733 7656.2699 17881.7084 18670.7137 19147.558 11312.8217 12658.1499 352544.7506 20286.9375 19968.3702 10836.9728 19657.0256 19657.0256 13990.9165 27625.2659 19172.3201 70002.4295 31915.6879 53978.5548 9088.9126 13465.1547 16817.0732 14182.9931 41989.5959 32481.9403 20218.7662 10527.7593 25345.7289 17326.6008 15101.8912 22376.6262 13425442 terc Metal Homeostasis Tellurium Detoxification Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 206608.6774 1278021.1915 141362.7978 26541.9991 28988.8252 74373.244 40932.9181 185212.1596 120799.7914 86857.5262 61931.3816 94138.3001 738723.4519 107260.7088 119132.1276 161517.7089 114596.3032 114596.3032 43565.0803 142769.1376 57130.2074 107772.137 253213.6939 72969.6156 142445.0147 107141.3246 72747.0939 80429.0475 302231.1706 67686.6425 120542.7333 71973.4406 111236.8016 106161.8149 58120.7843 88640.5362 299816744 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 14066.4036 6393.753 10608.6806 9496.7459 9592.6288 6668.6236 14684.7577 17775.8011 7164.2536 200519.0573 14695.2932 11517.028 6920.7424 5275.048 5275.048 10684.3725 19049.7399 10139.3085 17043.6152 16129.1352 32079.5034 4201.2706 13098.5892 18731.7644 5003.641 21406.1043 14744.2302 18565.1816 7168.7744 7790.5219 9987.4463 7767.7614 20979.2318 288921070 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 25476.2267 7049.0048 76753.6255 15197.4017 9487.8782 10349.9965 21070.728 8663.1342 15968.8805 23960.1682 11010.4144 425363.6819 39200.6062 18776.0023 289706.0894 15305.795 15305.795 10195.7457 22329.471 14799.0078 8738.5924 24844.3998 26823.3557 7269.3594 11977.9647 100633.8405 8430.404 54724.4733 18559.5742 24763.4898 10305.4481 19382.8306 19157.1137 7869.0683 27890.3216 90108251 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 155750.3204 34047.6055 54382.3636 3950.538 14354.1435 10625.2593 28271.3473 14786.1543 16082.2117 237322.3365 38464.284 37969.0339 17006.594 83522.0449 83522.0449 15695.1076 30263.4345 35481.606 31200.9352 38731.3075 21214.5255 48120.1872 8462.0096 18362.5863 11332.2976 124360.2492 19668.5195 23239.1195 9567.4135 19458.4423 22295.3489 12671.2924 21372.7449 229567699 xyla Carbon Cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 93066.7629 120382.9923 14937.0901 33500.6237 16282.377 33850.954 29775.6902 48667.3293 188975.9468 30299.6369 147704.7801 904648.4418 32807.3899 41605.0347 64735.9368 51256.2343 51256.2343 33279.5542 55515.2217 21602.9287 55146.9769 73172.5332 38783.6569 147947.7257 71471.7854 43187.556 98740.0443 88540.5289 122950.0487 63724.1581 22349.5031 45982.67 39065.5172 21331.4666 66539.2673 344690008 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5692.2199 7239.6102 8136.2087 5983.085 2282.1689 4267.5244 5903.8543 5419.1945 485220.223 161671.0163 10905.4477 73859.5127 19228.5721 19228.5721 4659.9857 12410.87 5247.43 5902.8751 6657.7054 4986.6552 3001.3062 2819.1305 10905.7675 24539.8433 11292.9898 42876.5741 8655.1367 5633.3731 6935.6566 8726.5808 2724.6856 6601.5419 374606069 amyA Carbon Cycling Carbon degradation Starch Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 5505.9667 4888.6637 15856.1091 12663.6669 148221.2561 6067.3933 2634.983 87985.983 12385.1672 3798.9957 4194.465 4749.1684 4749.1684 8766.2891 3282.1732 3624.1858 3037.0315 20097.0187 6049.9897 2286.5287 2540.8534 4444.9053 8217.5762 7658.1207 3057.9173 5044.0188 355336224 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 7791.4132 9889.4639 5203.1146 9663.7964 11353.8933 11439.7523 9730.5557 9730.5557 8232.1178 39044.0563 5685.4147 2868.0602 5689.8188 11181.3861 4329.4346 7086.7501 3406.6675 3846.0334 5130.7455 2897.1726 12667197 cmua Organic Remediation Chlorinated solvents NA Hyphomicrobium chloromethanicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 22730.4855 17832.5758 16660.8323 18955.8593 25937.3513 11253.0271 18804.0178 121016.6391 13552.6039 15665.0997 17283.3332 8250.281 422253.7079 28969.177 21385.092 22251.1734 11914.7701 11914.7701 121223.0771 24228.308 16567.6879 334375.6066 22441.7148 26311.3587 29502.757 9007.7884 24328.6684 8412.1812 32672.0108 16138.0312 22657.3653 10914.2193 11321.7715 12646.7097 8157.9582 21996.7158 209515694 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 71375.0151 35599.448 1517540.5723 59692.4554 58045.7978 27660.0353 82345.7762 118670.4442 17235.0522 97109.2657 85294.6118 36878.6274 1056387.7456 70960.2848 77198.5454 42173.5187 58458.7986 58458.7986 35128.1328 79874.9018 29400.7306 39753.4378 88706.8552 49560.0455 139909.6215 29924.7206 73033.3577 41595.8236 101577.5526 85993.5728 66019.7665 29651.5059 30149.1675 33496.4716 92737.108 56839.8781 27381528 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9623.0369 33553.8207 9746.3514 8773.1021 4019.4688 6549.6987 11080.3743 3514.5452 188622.7504 9541.3734 14994.1416 4835.1025 5749.9666 5749.9666 6941.0948 29281.24 12666.817 7962.3663 9883.2497 7005.2539 3443.4349 5622.102 15050.8394 6074.6135 18014.1326 37618.8031 12755.4139 3807.2382 6857.5862 8666.6116 6885.2282 13546.4083 307771565 B_lactamase_A Virulence Antibiotic resistance Degradation Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4978.1006 3189.4365 3044.6795 390610225 amyA Carbon Cycling Carbon degradation Starch Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 4465.3062 299510.1242 7071.4137 4487.353 3796.3684 24984794 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 21490.9334 185635.1376 59903.9565 8394.8467 24768.8907 8821.2323 38216.6322 7885.8935 14020.5027 10810.463 35249.1889 9609.9259 189818.1697 14493.0358 52829.9357 15865.4318 22395.1906 22395.1906 9856.0625 44587.4856 8396.1975 15893.4948 12618.8667 6315.5591 10030.8782 7503.1892 20392.6604 58188.1002 19998.7834 25986.0949 18705.1872 26485.8181 43292.291 15133.3522 18936.5986 10307.2851 94422964 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 35552.7794 19122.6648 22696.6163 14699.0517 32756.3317 37229.0274 18284.4649 20963.1961 54613.467 58407.3945 616558.5995 50434.9647 32797.912 29039.2807 17101.2935 17101.2935 14272.4192 40214.9314 24123.6646 20446.7488 54808.9902 33712.2934 133960.8947 14162.0389 25843.1708 11099.6944 47593.4289 17763.862 26581.6751 13381.3902 25192.6577 22669.0313 19244.4073 32736.4079 388532052 amyA Carbon Cycling Carbon degradation Starch Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 3780.6979 19798.4864 20217.9759 2320.5856 68867.3302 2936.5233 6888.1761 7639.8201 35971.8223 3399.0149 3147.308 3147.308 21105.9479 3440.1648 8106.1045 11277.1592 5806.8403 9527.8823 5672.8581 7972.6454 20994.4663 39144.0959 11366.6227 2145.1233 9673.4278 13023.7231 4538.3652 4702.1095 51855026 terc Metal Homeostasis Tellurium Detoxification Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 5738.0469 10146.6998 285973.5579 155209.3636 4404.7657 7317.8728 6624.8781 6315.2545 9816.3633 6031.9418 152439.4717 5884.3764 5143.9573 7836.6897 4540.0472 4540.0472 5380.8887 24827.8236 14625.137 122593.6947 15273.6393 115849.0615 4406.2798 8711.5955 17200.7231 5533.9177 35235.2589 8124.9322 35956.067 6210.5174 8440.64 50296.2526 9005.9299 25861.9369 116252599 catechol_b Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 76880.3752 20740.8243 144552.6766 28101.1786 59079.2402 24860.7654 43148.3232 96588.8753 24593.8948 37105.018 76176.8938 51379.4127 813628.7748 39705.7224 44922.7789 69552.0798 47647.2836 47647.2836 35148.6727 150875.3962 44943.7217 152687.3527 214227.0404 27218.9967 59269.0404 50173.1101 51694.5269 62206.2251 187771.4048 69888.7457 95893.1481 36250.2715 41594.2439 60559.529 74188.7485 40411.4643 302673144 endochitinase Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 20066.586 3354.5485 3272.8679 10319.6127 14917.6312 22076.6309 7859.5415 397453.0691 5913.272 5528.0628 4474.5493 21094.8699 21094.8699 6253.0353 16397.518 7111.7417 11131.4056 16430.1941 9092.7823 3805.0556 11232.7489 14928.3072 5373.4813 32004.444 11704.9868 16318.0253 4416.6685 4877.6243 24930.8796 3031.7884 6635.2231 378578325 arylest Organic Remediation Aromatics Other aromatics Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 60630.182 24442.6908 27532.0655 65009.8923 52900.8239 13633.3252 46486.2429 35679.8534 48111.1243 84628.5711 52435.7953 37194.8728 781600.1139 45562.3556 59061.87 34641.0942 31006.671 31006.671 36046.1363 50557.764 40030.1034 35116.667 55963.8208 31143.8882 38075.3432 35326.8297 51342.2968 40489.7977 216880.1452 54515.4143 48920.885 18398.2206 41458.3828 32822.697 39838.8717 70794.8613 356675423 tktA Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6337.3886 8272.0678 6020.6751 7030.2719 13754.4879 4014.0029 12803.2745 4598.35 7084.9531 9543.818 2531.9652 2531.9652 9206.0511 9189.6664 5552.6771 4580.8303 4362.2693 10673.6446 4209.7734 3763.9928 5920.5801 4155.8637 15043.3783 4650.5448 10469.2796 3423.7052 5229.6627 3948.6401 9565.8701 4851.9452 222436393 tktA Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 13208.848 4650.1544 3250.2754 3173.8363 9531.4618 2862.8562 3838.0771 5595.3388 2394.2461 2394.2461 5542.3035 6715.3344 5161.2175 52526.7741 3451.402 11062.0199 9227.5981 6516.1776 3005.6048 3680.6324 3316.7624 2342.5413 4843.3905 189210447 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 187479.2319 5791.9641 5039.1312 14662.5602 3813.0851 30615.0237 9007.7587 9249.7029 24495.6435 185141.8606 5739.669 8842.5423 5172.9592 6506.417 6506.417 3930.4653 79194.4714 13832.4136 17278.0434 58944.596 4938.3234 2938.3895 4808.0711 13343.9052 3431.9876 18752.0056 6518.0228 7562.9269 6916.9371 5525.6461 9448.8852 2968.1874 6236.6454 70985925 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 200835.9185 17726.0917 36780.6286 34635.1033 12355.6689 15393.8406 40599.5425 10951.1981 23858.2743 19069.0281 15411.9954 978366.904 35366.354 31352.1599 26260.346 10168.9843 10168.9843 22993.0487 60802.4439 44477.248 43610.1302 52054.0111 55258.9595 25348.635 38000.2387 32355.3243 16111.7732 93516.0991 22166.2785 68885.8162 29910.5972 22799.0269 31414.3235 26784.2867 117394.1158 392721731 catb Organic Remediation Aromatics BTEX and related aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8704.6979 14960.8028 154959.5619 11741.0363 3672.7479 9325.6625 6476.315 11221.4655 88466.4199 5204.0103 13501.4348 11489.7638 32840.807 32840.807 4900.5977 20865.1872 4845.2598 3607.9595 7009.7791 2962.047 14177.6052 10746.3997 19462.0613 21087.572 7581.1349 10205.1986 5364.8581 6167.7116 15570.0981 3571.9496 11572.9813 90324123 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 31737.5511 20904.2833 2926.3581 6281.1481 5980.6948 8149.5218 3439.2855 3439.2855 17477.8025 15666.5513 88440.7531 27291.3473 419386.3633 15910.9629 2281.9998 8122.0222 12820.3664 8787.4671 5373.5095 15849.0007 4654.2156 5008.6613 11524.593 63272.6977 242778239 cellobiase Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 20854.3199 33195.1134 5331.8677 30241.9817 6770.8573 99485.9746 29344.9169 51062.7892 10907.3366 14657.0444 12765.9544 489205.1646 24683.1478 29802.1675 71445.9344 21575.1454 21575.1454 7590.115 35708.4096 15581.636 15267.9961 14436.3231 24669.1025 12688.6367 16809.8519 22620.8001 9750.0469 39192.7314 15412.4116 25071.452 28555.8233 13922.6349 18588.8233 8230.3405 19461.1627 220923578 mer Metal Homeostasis Mercury Detoxification Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 15585.1733 9725.8077 24950.0272 14198.6365 7194.9887 12771.5999 4591.5873 10526.3785 23898.4325 21525.9815 253098.3648 22413.9457 19120.2201 11100.2169 15009.0516 15009.0516 9163.837 21382.5436 13634.9663 14694.3857 14031.9836 15815.0072 8341.9199 8681.0674 17291.2113 10388.8742 31485.7809 25743.0318 20665.8721 9090.4628 9697.4785 24251.304 11958.4259 23725.0904 182435112 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 18635.1105 5614.1449 15622.9838 99834.2489 12472.3112 7735.5493 25446.1317 4865.57 10588.0845 19115.8188 8499.6271 262638.9033 15351.4932 13413.0081 22900.8592 58341.1392 58341.1392 10474.6027 17509.6338 16690.5378 21231.5935 206575.5455 23589.4657 8836.8654 8240.3412 22982.8144 7411.3296 29470.918 16219.9615 21832.0773 10513.822 15426.5505 26788.2828 7147.5817 16832.426 34582632 exoglucanase Carbon Cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 190675.5137 41481.7817 71075.5937 726873.0584 121132.3053 61947.7774 78653.2686 357519.5589 85774.9939 115658.9229 111679.4269 137081.4328 5997244.9332 144919.4122 166478.356 178361.7477 109475.9994 109475.9994 86693.061 149889.1139 107475.6456 157391.3865 170785.7057 138184.9377 211781.542 131058.4038 340074.6955 184637.508 323938.1263 180295.0496 119426.8062 66722.0178 60432.6066 109558.14 292464.0128 847000.4032 17976753 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudanabaena sp. PCC 6903 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Pseudanabaena; 5406.6678 8404.2833 18456.9857 23876.6036 526721.8114 3062.5181 6051.2438 15185.8047 7293.5499 462770.8875 14014.3451 19421.025 12447.8355 12751.8878 12751.8878 3720.1049 53829.1797 13026.1461 15201.6425 7414.6388 24372.7122 2603.9136 15401.3373 14394.5028 7767.7682 15610.45 12477.8746 16094.2767 14131.4941 8398.9354 8011.4121 5094.0639 10333.9525 118166205 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 22459.9471 20043.9851 12696.8263 23941.9673 6030.2972 51323.0511 147055.1363 11738.4338 10271.56 31066.5546 16121.5367 171866.2933 38046.1868 20624.7512 18392.3122 54080.7788 54080.7788 15347.1572 24678.689 26132.3841 24586.6585 19747.8236 11704.6903 17188.6095 44215.4985 24015.0888 32695.705 30920.7337 29311.5609 63340.4444 18886.8436 52681.2669 17691.3932 25895.6527 51758.4349 225041086 amyA Carbon Cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 235356.6527 206304.1205 197841.8791 125759.1825 126056.0673 26954.0507 91162.7849 192535.4199 95704.2226 195081.741 211309.0557 141019.5858 8982334.7422 162838.9729 231573.8083 317958.2993 187811.9632 187811.9632 104066.8139 176543.7707 132711.5332 161536.4526 930359.2787 282184.2842 93156.0523 106506.4194 248289.0677 106171.8485 386386.8845 86477.8056 244194.4679 93353.1888 116871.0222 178192.0343 127771.9907 214784.8978 123200219 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 25883.8383 10015.6742 6571.8139 23849.7655 19049.7696 10496.3602 18187.6866 310462.1461 13440.0607 15250.5847 18028.5063 460704.5135 18423.0405 23197.4849 37540.0288 13512.439 13512.439 10930.2875 65372.5879 20550.5988 22061.2158 31915.2371 80921.3792 12185.7453 20146.0936 33230.0466 18359.2319 40154.6151 32536.4811 40990.3584 17856.8422 16939.1563 19367.9119 24369.1937 17824.2714 239933535 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 11442.4183 4465.1498 19338.1982 4715.3693 8991.9772 13651.8116 8200.6796 7971.2147 10963.3137 101187.2261 5854.8155 16623.8944 11080.1593 4998.0569 4998.0569 4551.6565 8119.8816 9091.3333 4280.3412 7551.4691 5121.8671 8350.4716 43331.6407 78193.4996 96775.7029 36048.8566 4018.3076 13558.375 8849.2084 4882.2032 7531.2574 338168464 endoglucanase Carbon Cycling Carbon degradation Cellulose Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9263.9846 4818.0658 3326.8191 2750.6894 5042.5416 6072.0059 3691.595 129695.7444 7267.6726 4310.7737 3798.7423 3798.7423 3641.584 13259.3021 9050.6777 10873.784 9329.6846 3199.7352 3387.4782 7628.1442 3358.7314 11833.5574 8531.3403 3295.9623 4702.5345 5327.9592 4985.358 11696.9984 260650932 pme Carbon Cycling Carbon degradation Pectin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 28144.1584 146440.052 32690.418 21490.0696 21565.9736 75834.8826 12020.7548 28645.9657 35803.5464 30385.0206 654877.4887 29262.8874 28659.9004 43616.6516 13858.6003 13858.6003 82226.7297 36794.5079 28604.9483 22679.8004 27155.5353 57685.9282 18917.8092 32444.7234 69928.8791 26940.6622 169008.4518 56294.9864 30834.0933 22601.7434 23767.0209 27179.2808 13500.9974 21528.5526 157285608 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 26914.1903 55097.3995 5566.0002 14138.9842 13273.0022 52818.6756 13246.4742 7364.3049 126058.2802 9354.4672 208600.2493 20202.8697 19903.0788 20246.198 10805.0227 10805.0227 10733.1555 33585.8204 14305.1319 25216.4785 29630.3686 9214.4476 6662.5204 13973.35 16743.7702 9747.9719 32124.7753 30699.8638 182723.7177 29289.2418 18489.5968 25671.2772 8397.1249 44196.8292 398228380 ben_bcla virulence NA NA Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 47506.6404 27128.5514 18242.139 26008.4397 27172.326 5340.4452 111179.7383 29672.2586 32570.3461 251162.8468 34615.8678 49321.0488 456650.0823 29558.4335 43923.2085 29876.3612 41342.6233 41342.6233 21895.23 73248.5341 36609.429 162729.4815 45927.1591 50699.9549 36464.1722 35589.6032 35085.5909 81484.7431 105076.1017 27804.7561 40695.0952 24442.9563 41759.2479 69591.8104 28968.6322 56072.285 60326776 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 10386.8563 28581.0718 10202.7756 3802.4743 5812.3753 6254.9159 2577.854 2577.854 14236.3499 11328.7862 4082.5819 4504.5508 8952.7834 3243.5381 319413929 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 43084.6817 19614.6538 16686.1478 33416.9275 521706.3076 15490.0124 41038.7088 25877.9517 19221.4788 33054.9009 27777.498 423640.7519 83231.7278 34204.1055 46628.8434 43493.9014 43493.9014 17741.0885 46478.7494 30993.2925 27538.9094 57847.7411 41366.6888 77399.0751 21742.283 34509.1844 42584.8778 55650.632 38704.4956 56444.5197 18935.8101 26446.863 36617.0109 16137.3526 40335.2772 359423324 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 448826.3602 35180.6975 204671.6137 60481.4813 92447.2222 39840.0787 103379.834 114414.7552 39674.4434 45067.6711 71065.9951 431187.1554 1649981.106 351625.3293 75435.7555 72816.0347 53642.519 53642.519 53682.5984 96647.8152 65312.745 93414.5918 104297.946 128602.2815 43342.9754 58572.9547 84315.5308 69750.0378 209107.99 84170.9244 134365.2677 41141.1031 48411.4736 64423.5572 50057.7976 126374.549 291544870 RgaE Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 114301.9897 15955.6995 5713.1529 9739.9023 9827.5892 2819.1368 39320.9193 3371.4094 5104.6767 4722.6714 57750.167 70959.0524 5730.0343 8070.2447 6502.8473 6502.8473 19113.3323 6018.5267 4713.3158 17830.897 9894.2601 3478.9161 9238.2837 12463.923 5626.7584 4447.2987 2837.2844 11676.7562 302468180 pme Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 5255.7657 1863.8655 3750.1113 6999.1398 2240.0986 84808.8298 4273.1842 5301.854 9797.3244 9491.7572 4584.0207 5939.106 4103.2561 5711.4256 7584.0194 8892.3111 4803.9548 6710.8686 2541.4409 3755.7029 3131.6956 2449.7317 6442.7544 160917573 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5515.1703 5047.2646 3310.0888 3439.9298 4662.5793 5119.38 5667.1971 2438.3608 2438.3608 11166.9848 9217.8666 18776.6239 4886.6159 3695.0576 3068.8122 6056.5902 4336.8212 19899.2772 5919.7063 8426.4155 2430.4576 4584.6359 6292.1682 2924.7575 9406.742 83309358 poba Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 678594.7674 22583.1064 7306.4157 15248.1085 4811.9616 63892.2697 55522.205 23683.9502 37967.4157 28397.439 31579.5773 876369.5478 13384.7434 113299.2859 45589.5524 31121.3578 31121.3578 38957.0052 52862.8993 17597.7132 37606.0992 47211.8596 29797.5727 25731.2628 25846.566 57250.2643 29844.1002 106477.9364 20010.7359 74894.6832 20566.0127 37408.0683 54899.8077 46726.8843 14318.6378 28377119 amyA Carbon Cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 36011.5329 12445.6626 5402.0185 13044.9044 17197.8047 28284.0458 96307.1186 30960.4422 22864.7794 51216.5523 11111.8293 364378.0618 23466.3457 14616.6844 19057.985 23290.6781 23290.6781 12777.2487 22794.142 14385.4767 43702.972 48771.8163 11507.7715 10680.5765 11843.0738 20984.0346 93764.3877 51634.951 62475.327 19325.9874 8062.83 15762.3205 38473.1622 69974.0025 22048.851 32308065 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11930.7316 6544.1134 14786.1914 16297.9324 18470.7884 33785.8072 9138.9417 12503.5994 15463.5222 13381.9619 256822.1934 14864.6907 17270.2856 16353.6383 10586.834 10586.834 8215.1695 30561.533 13637.3138 10065.0771 17312.3731 15337.3941 7784.0488 11236.4647 41099.7398 36686.0169 27735.4943 10568.28 14840.7716 10212.4033 14722.1681 66708.2926 20840.6675 30686.0929 386326777 xyla Carbon Cycling Carbon degradation Hemicellulose Serratia sp. AS13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 83338.4327 100278.6144 12833.4487 16399.0131 23819.6655 15342.8487 9863.5974 9444.8097 14736.2459 31929.3073 19091.8622 977321.1722 12638.5896 22036.7565 23094.6246 30282.2289 30282.2289 22608.795 21400.4758 20037.7101 11390.9047 45776.0257 26803.8134 12336.3377 14685.0357 27839.33 18849.3062 53264.159 51275.2544 29765.1443 8327.0327 19608.9407 28357.6817 19738.6518 29617.2222 383210682 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27194.0071 5264.0729 7413.0204 52628.8964 7794.5073 6333.3348 12382.703 9956.7379 19070.3682 24450.9135 192830.9145 15663.3557 10032.8371 13282.7948 12259.018 12259.018 6346.0992 18795.6074 13476.989 4907.2886 67865.228 10816.1385 6974.5404 22180.5498 21712.604 27968.175 70827.2305 16938.2473 27157.8819 8239.2129 11678.0106 15374.8811 9115.9354 12885.5175 227290132 glucoamylase Carbon Cycling Carbon degradation Starch Humicola grisea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola; 286706.0951 43283.4779 139721.2452 118890.1605 2272499.3766 95288.2783 132835.195 201368.564 131976.034 201848.5721 216140.2479 154386.8411 2947663.8556 770166.388 297216.5983 268410.9765 167015.3826 167015.3826 218176.2717 295085.9717 148414.3856 207619.7227 198984.9531 2305402.4631 252265.2656 186277.2404 255257.3604 122476.101 133451.2259 429111.3724 319736.5657 89970.1974 111237.7423 233886.8364 44127.7001 355384177 pula Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 5717.5898 4102.714 3654.602 2472.0684 2597.5182 4953.5969 8585.8782 2699.7258 101987.6071 4957.0183 6368.8546 3441.3093 3441.3093 4961.9655 10424.3948 6734.4761 6571.1778 8832.4798 7045.8342 3977.8731 4431.7873 7075.6277 2510.6895 10978.2484 3862.3475 10717.5678 6160.4356 4867.712 6292.793 7560.4815 9719.2781 322706446 pcpe Organic Remediation Herbicides related compound NA Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 32999.00695 19512.0398 7334.3456 8326.24775 18702.9012 19428.78045 6956.1322 8474.99445 5115.89315 6433.11495 7814.85405 4657.5414 141204.83145 6526.18425 10241.9257 8410.06675 8410.06675 9206.7948 10862.8279 9814.999 9943.6035 8287.9459 13652.1615 5408.2707 6206.27445 9895.2553 4717.7005 18555.4153 11648.77225 4979.7929 5428.918 4931.8849 3585.3499 11645.9413 384371436 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc2 superkingdom:Bacteria; 37078.1171 14786.9806 15717.7961 29571.2101 37484.5271 20655.8359 10769.8647 27635.1769 43062.6003 20493.8662 961221.6679 43749.6303 31768.6902 21873.5164 12220.8916 12220.8916 24735.9498 69002.0765 59278.3919 40040.0275 49905.3448 55170.2747 27323.5221 22328.8592 51523.2518 23541.3525 102991.3373 49143.7806 60076.5255 46459.3875 35956.7972 29588.3323 20450.9357 50398.5918 37521865 PRK Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 22640.8698 179275.1265 8408.32 30501.092 40120.6897 8030.9573 9946.2043 14617.0202 11186.1925 17948.282 26286.599 374117.0636 18099.232 13177.8994 17325.04 7205.2045 7205.2045 12858.9415 23019.0068 13448.7293 16408.7856 23373.5098 12415.1234 26096.827 12042.8172 16396.0988 9842.5092 46792.4041 13975.0293 20682.3456 7283.2062 11131.4124 17979.1968 14276.4536 15799.1406 336008100 xylanase Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 8493.8995 4967.5894 15736.8147 4978.6672 3635.1485 6860.164 4802.6353 87905.3935 7796.9366 5681.6761 6585.571 3172.9194 3172.9194 4478.4332 11653.1735 6449.7064 12533.399 21601.5641 26693.414 9003.953 5926.8483 9252.0481 5538.7394 15544.1332 10329.3561 11946.8945 3908.184 5184.0131 6905.7683 3026.1136 23595.7432 354615343 bphc Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 5665.0994 4578.3247 9574.6534 4123.4489 5221.0447 8693.9791 6615.7433 8627.7877 4954.6917 2702.5022 3589.2258 7495.3106 2800.7508 7392.0249 3711.8687 6662.3094 156104506 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7037.0731 8462.7835 27125.3127 44885.0734 2515.4534 7225.7317 5863.5398 8690.1436 9028.9053 6370.1892 318160.8906 11044.6533 18948.659 14625.963 9041.1361 9041.1361 4537.395 9698.7593 13007.378 11966.6277 5607.6394 3754.3233 9311.7981 18081.2482 3493.4034 37891.6962 13386.2969 39898.8508 16233.6369 13319.2003 9575.523 2345.0715 4515.3659 374371799 phn Organic Remediation Herbicides related compound NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 177105.6607 55438.4872 36005.5777 53215.8338 38448.7485 168515.6495 90109.2094 36319.8006 53687.6839 102884.5791 103249.6909 970587.8351 42329.2665 79984.9353 235587.0019 130829.6324 130829.6324 33778.6079 89402.0933 124723.3835 59090.646 77747.2107 564237.2226 70906.0198 59225.3952 49902.4407 63407.3846 192336.0288 75095.3945 81137.5701 32108.5501 63148.9648 63704.5664 41655.7665 105354.2026 340360547 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 14239.5503 6937.0951 17485.1278 25806.1888 7785.2019 19452.7519 3848.1016 6898.8315 10636.9331 9994.3692 177773.0748 65485.5863 11573.8219 14167.9369 18029.2967 18029.2967 7962.0095 19418.7733 8941.766 29117.2653 26311.1758 15189.0805 7963.5156 5947.9479 11622.4909 4207.4386 15135.8049 10386.6601 41781.933 14500.846 13801.5409 15102.1955 5212.4807 8840.9504 119671055 arsc Metal Homeostasis Arsenic Detoxification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 55446.903 159669.233 41001.1782 149123.7758 144296.2148 130827.7687 59190.9891 32150.148 37294.8683 203989.3527 56230.8694 2767656.1475 155253.8475 51460.0701 94216.7559 30251.429 30251.429 99845.2184 87646.0422 102141.4835 72805.6632 67978.2457 79123.7831 41788.1494 50474.4424 79140.1848 84846.6296 223010.5998 71447.7504 91738.1572 94843.1939 40978.7541 100087.3711 245372.6713 126693.8353 334859559 limeh Carbon Cycling Carbon degradation Terpenes Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8889.8185 4632.2021 2779.5456 6608.9023 4029.7134 110394.4602 4362.1783 6681.297 6681.297 2970.1944 9264.0323 8810.9088 5107.8493 8353.3386 7197.4272 23759.7691 5993.5325 2686.8567 7897.5475 9426.7644 8506.0527 3185.1243 3871.0608 3438.4654 10521.5357 5197.9256 99082005 FBPase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5003.3532 15710.2364 4439.2178 4492.0078 42798.4772 17374.4414 4593.3837 2195.773 2106.4784 26278834 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26925.5411 3473.0016 16323.6157 4966.5631 7488.0747 14536.9141 15596.7503 206643.3639 9653.8424 12101.4128 9094.7438 9803.2212 9803.2212 5884.4875 19082.8281 8877.8183 28439.3972 9891.4245 29220.7011 6646.4781 8527.1295 23957.1186 11135.542 31811.5175 9656.6398 17014.3301 15664.9525 9000.8547 29987.7535 4271.7828 10336.4823 338168420 xylg Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 34433.7807 37888.0013 80012.9989 18834.6489 23478.4392 12701.8463 32060.9276 58168.1659 19449.1455 27302.7309 40527.7641 387886.0575 28621.985 51169.2371 36986.3658 40193.1888 40193.1888 15189.9677 54141.994 18332.6978 24452.1109 32204.3158 18140.325 12230.7467 22654.8665 24910.5379 24388.8226 48282.9665 25138.7493 30770.2566 12741.7791 31427.3951 25115.1964 21279.5388 34357.9214 1518425 cysI Sulfur Other NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 9384.5325 6245.8714 2319.6946 3950.5653 4123.7658 9606.138 8722.9285 86034.1463 8646.2409 11277.1322 16481.6743 23217.5875 23217.5875 4282.5468 9148.0543 4698.4291 12535.495 33727.6367 27305.4214 4098.4115 7474.6244 7037.0569 7463.4537 14376.6264 17038.5625 9637.8908 6761.3433 7361.1452 8945.7606 4688.2596 19115.2958 296805908 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 8617.7356 116814.1188 140939.7415 20807.3995 74398.7746 7606.6481 6792.6206 8403.3571 5340.3377 33962.448 10315.179 14755.2163 197259.7241 12819.0609 13947.9703 9163.8182 4743.951 4743.951 8271.5022 34241.1396 13621.6113 8482.5103 13104.5918 14229.1307 4680.1277 5710.3707 15668.5406 9961.5015 18642.4449 17312.7693 18633.0536 8860.8555 9922.5778 7358.6196 16468.637 14765.8546 389932248 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 4697.3326 12821.7639 4578.9774 3358.7985 7811.072 10981.1025 295414358 PRI Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 16111.4382 27035.9305 19831.4807 3396.9962 7239.4792 4855.6695 77117.6506 7482.0131 6599.4179 1145488.2368 22489.5994 32404.6651 54130.0315 16553.4022 16553.4022 15434.6976 11716.0015 11860.4695 14083.8954 10306.6954 8757.0881 11795.037 8948.4561 25497.8997 15118.4052 23000.8115 18878.896 13760.2229 202551.4678 9747.1523 25334.877 33192.6142 36149.2494 256420081 phytase Phosphorus Phytic acid hydrolysis NA Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 14669.4639 34024.7652 4766.7978 5119.172 10697.1958 11844.9978 21839.9839 5468.8537 25049.1721 10850.8277 210231.0795 54851.0308 9944.4581 12629.7267 5163.5549 5163.5549 4018.5168 13271.9627 6793.8782 5171.1159 6240.466 7033.8453 7979.4352 6368.3882 12269.5665 7289.9353 30212.8547 5418.6184 18220.1118 5047.925 7010.6231 9266.1283 5673.2261 5603.8652 156058746 amyA Carbon Cycling Carbon degradation Starch Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 9949.7946 2564.6962 2837.0185 69624.6836 2616.0374 3469.4733 3515.8412 4408.8102 6974.8802 5496.2484 7448.2002 3013.6416 2594.6294 3092.0667 6046.8119 56799047 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 466872.044 49752.9761 298814.9259 144205.0186 710538.2344 325337.0976 214262.6772 694236.9864 298160.2702 604229.0067 556140.9411 281803.2665 5402385.9559 401261.78 622311.9685 1311889.3738 476571.0436 476571.0436 266426.3902 354959.4038 258162.7637 522911.3655 543007.9694 339724.5901 244194.9287 272279.1764 456660.0293 288323.8134 974363.8906 237582.5884 476207.4226 213639.9574 245163.7838 263324.9942 344444.7237 730336.6853 219542497 mcl Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 3971.3439 34413.2146 2890.5648 3025.8958 68105.0391 5988.3458 6718.5588 5470.8781 7726.2249 7726.2249 3874.4171 3912.0899 2898.9453 8903.3463 2304.73 11389.1764 4706.0222 8619.4112 3932.3113 3044.4615 4768.6073 2001.1313 88771705 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 47702.9113 26260.7933 11252.551 14927.1918 16370.4471 47047.5322 13720.6777 15479.9476 32660.3645 29300.6209 600410.4855 35370.1875 26393.7568 27382.8433 17610.2206 17610.2206 25364.6716 27926.0745 20297.575 21739.178 33371.6572 18592.1218 10949.9379 17283.3383 401058.8145 14728.1988 59702.5944 25842.1515 26905.6667 14530.9158 17476.4755 26863.9504 20187.0699 37067.9991 63029775 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4188.7044 4039.4526 2661.7494 5004.4753 4027.1589 5980.6941 2861.0883 58573.0197 28874.7857 7372.3474 3352.105 7687.721 4675.3088 17072.4567 6397.0755 9727.203 2923.2603 3035.6657 6528.361 3480.5406 11874.1926 4373.4822 8120.7126 2512.0667 4268.9612 7689.5484 3202.6554 7738.583 60476361 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6310.6136 5385.2488 2910.917 3419.2471 3626.8546 4737.7389 81031.253 6533.313 4646.6659 2281.6648 2281.6648 3877.2679 10874.1539 6774.8962 6243.0819 5448.5212 2584.0233 3333.3979 8912.9474 3052.9857 11950.8191 6746.7104 8548.3975 3536.3675 4174.9347 4735.7693 2584.9047 6360.4976 225903832 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 44320.5472 11516.5297 8125.4977 13046.5243 5799.0963 14371.8664 9632.4241 5654.8505 280184.7531 23812.9263 14425.5447 213157.0123 12350.9714 16519.2566 15711.1211 8548.13 8548.13 9093.8167 23561.1646 13565.9797 25642.8805 225531.3223 17517.0602 44853.5786 7673.7564 16609.09 11819.3169 61195.4852 17116.6602 24506.4524 6699.8161 11654.2304 13250.5209 8735.0144 25054.5719 157679044 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4479.3628 6798.4462 11980.5927 56984.7133 4047.6502 4003.7751 3506.4457 3963.9592 4952.1144 7890.4462 8927.5747 2239.365 3892.6815 45360.6157 6757.2401 374846254 cutinase Carbon Cycling Carbon degradation Cutin Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 7240.6329 4968.3492 33406.1804 13088.4488 11266.9037 10873.3398 4552.1009 8108.6138 13189.9038 9018.9126 253678.218 12144.0546 10225.3098 11177.1819 10394.2014 10394.2014 4105.491 22832.1373 10120.2775 7653.6578 7562.8097 8470.8197 9633.6965 10385.1145 27200.2807 5439.38 33977.1985 16453.6814 26340.8188 6879.4125 8677.7893 9029.9894 7221.4127 24943.6028 85113565 axe Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9844.4598 7740.3115 188523.435 14502.1023 5161.3912 2054.9021 3945.6609 5775.4434 3293.4248 126115.2753 7380.4547 9651.4549 5784.3033 3572.6814 3572.6814 6754.3682 17618.318 8545.0881 9702.7592 10751.8479 13790.9907 4316.5389 6422.8823 15637.2535 4262.3166 15797.4831 9136.5957 13552.3051 5873.094 6312.4309 7380.1339 38421.4532 15944.3759 343918789 arsc Metal Homeostasis Arsenic Detoxification Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 12334.3138 6768.4759 40145.7349 27947.5075 3336.8707 7522.1217 4965.3233 5998.407 18344.6021 21098.1357 263724.976 14060.1067 12388.3169 11333.0956 19620.0445 19620.0445 17662.0698 29324.8989 12343.3016 7251.3203 21315.3711 24437.5564 6561.8028 8862.0052 13671.4539 7773.7258 24351.207 15083.2034 19204.0497 5654.225 11047.5575 12608.3282 5727.076 19031.0092 398831338 pcag Organic Remediation Aromatics Other aromatics Phyllobacterium sp. YR531 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Phyllobacterium; 6360.8159 21718.2664 2690.9599 3331.591 3271.2266 4682.2453 3716.4909 141518.7791 10508.3952 8177.4604 3873.1316 3674.3421 3674.3421 4369.9572 9688.2025 6611.7198 9503.6182 7249.3047 6460.7907 4271.5942 3018.7511 9382.7625 3956.0604 13887.6619 8717.637 7130.1838 4013.717 3397.6993 6880.6175 5333.6413 12108.8033 116626517 RgaE Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 11448.7507 10787.775 6672.0014 3461.0979 6143.4166 53325.8763 93059.955 14180.4809 9381.9041 147527.8373 11097.8488 11270.3376 13151.3732 8906.0707 8906.0707 5376.0345 13435.5365 6238.6907 5799.8009 10209.6208 19437.9992 6182.6804 11378.1962 10979.4056 4283.4805 6118.5264 7731.3093 11453.8437 4441.4269 11403.3095 11597.6312 6546.9241 12583.7661 261282381 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14639.8983 10308.8344 4157.6568 13215.8321 4529.248 6430.608 18717.6332 3892.431 9837.5909 8094.174 27493.5897 107192.8628 9095.326 10085.3428 7885.5096 8531.3467 8531.3467 11154.0827 80069.5695 14672.0455 11179.2076 20848.6544 20237.6363 8860.8373 26780.9605 12167.9625 5281.4307 26965.3688 8658.2944 19504.2309 11060.4463 14031.1563 18281.211 5399.2701 15017.1466 83591562 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 20863.0957 12360.6705 7505.5105 14020.2338 60628.2515 12527.2771 29184.2705 12129.8954 27887.3455 18082.9781 346095.4608 14801.7565 15170.4251 18339.4236 9911.7083 9911.7083 10805.5491 23453.746 15027.1768 22081.0457 16802.7903 17890.5867 13857.5287 12884.1947 17530.9226 8905.6136 33454.4577 9695.9486 18785.4404 16471.123 15715.5975 11956.2949 7971.5933 22997.9573 334133039 exaa(moxf) Organic Remediation Chlorinated solvents NA Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 4521.1535 7268.6394 5732.1843 26859.8894 25656.9558 9862.9717 1827.8393 5121.0353 13115.4701 6203.7901 210070.1816 9806.2385 7708.9886 15225.4085 14780.3184 14780.3184 12725.652 13556.3222 15899.4305 6081.3136 8614.6198 6976.9507 11123.4127 76384.1786 3805.2683 30799.3308 26645.1843 23736.3608 9446.1557 27683.0362 14263.6596 3148.9237 210631658 ppk Phosphorus Polyphosphate synthesis NA Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 8125.1644 4661.7112 2700.7822 5440.8599 4325.631 3740.8374 127483.9928 5816.5127 4890.7168 9767.0387 5864.133 5673.7479 7897.7823 6189.7648 3018.1394 3393.2054 8218.9123 3193.8371 16016.7729 5838.9568 6574.9722 4289.6351 5119.4447 5041.4236 3353.4393 7501.1551 28542625 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21766.6896 13025.5932 51458.802 36627.1058 30390.3291 18908.3524 26434.6393 8799.9605 19726.9262 20544.8541 11685.648 440700.5056 35973.1177 27943.9633 19470.6913 15652.0964 15652.0964 14521.6941 31033.5355 17761.0442 23750.1149 25409.9116 21007.879 10775.6919 144291.7444 27364.1564 12059.2914 39767.4363 27400.0743 31205.5983 10595.9161 17598.1766 13046.8908 12179.0077 27061.0584 3165372 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 3764.9301 9399.8881 2725.6539 2924.6498 5196.6207 2508.4118 3708.6743 5629.5615 12692.0003 17111.7366 17111.7366 2717.4757 10890.453 3682.5724 42552.8839 2472.9524 3997.2321 6773.7005 2812.2547 8222.1931 4395.7819 13657.0941 2506.8318 6117.8677 6101.8556 3316.0011 146404230 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 24504.2837 39400.9717 14386.0325 30013.0872 40843.893 34497.5499 107034.8826 211018.8131 120554.4598 27849.3385 37675.8126 33676.875 570416.8314 33386.0027 35280.106 36143.9222 16546.7839 16546.7839 20103.5663 34067.0156 20603.8677 51850.335 81499.5452 33581.8996 16770.5399 37096.9898 28095.144 20336.7885 44642.8496 25801.711 38154.3774 14285.9362 19177.5968 16792.9893 13633.0955 461448.7052 77976517 terc Metal Homeostasis Tellurium Detoxification Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 80266.6611 16895.2206 21583.1353 22944.5324 32356.3282 34050.966 15484.6366 47557.9892 22121.8835 19571.6115 57934.7983 50250.5139 458858.6642 121941.4307 67844.3224 44617.0161 24865.4328 24865.4328 19085.0431 35777.3652 21136.5376 73175.343 41326.907 20403.6179 30079.0825 23941.5443 33163.5445 59384.0004 153962.7643 64575.7661 43541.9008 26838.2923 28871.9037 36538.6503 98398.5006 100850.4219 317478313 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 4_1_36 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 11703.4234 8641.5194 9276.0405 10858.0609 27010.7525 7418.8596 5672.207 8834.8665 10694.1298 4311.4059 222566.3141 13228.7898 8257.8894 6661.584 4892.8446 4892.8446 7635.6213 19873.4486 12064.3066 11546.0769 16753.2674 10251.8424 10245.8397 7159.044 13194.7706 5832.9224 24679.6597 12561.8492 13380.7094 7941.6529 11926.9632 8333.7986 5127.7464 20230.2199 76884526 mer Metal Homeostasis Mercury Detoxification Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7852.013 4892.9251 5955.7252 4177.3023 4099.8861 5743.2534 3932.4593 122417.4107 6338.7758 7815.87 5257.9027 2595.5172 2595.5172 3885.615 11999.4314 6343.2456 4942.3824 8627.2527 2501.8185 3004.338 7274.9869 2825.2916 8777.3604 7524.4703 9410.9062 3122.7049 2933.7596 4187.4279 2938.4552 6023.4632 84509022 poba Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 5361.1645 125600.1575 5140.2085 4426.6464 6784.5961 2853.8925 5112.1213 87280984 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4441.0842 4161.7009 9729.633 64168.9254 6708.1062 6029.5316 4542.3132 4784.6583 3680.5843 3841.5025 9431.8992 383841415 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 19057.0078 10899.5351 10287.6684 13076.4147 5922.2282 4762.041 11832.1323 20757.8793 20545.1577 231976.7079 16180.042 8953.1031 20975.8483 18713.6233 18713.6233 10446.43 28662.5459 9193.2141 14763.011 23048.5304 8379.4147 20521.6772 11407.0372 15682.4235 8730.3283 42292.6889 16356.4292 15569.1326 7426.3027 14650.4753 15322.1535 18169.9828 108534.4544 338741183 PRK Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 6374.8504 3678.5516 5623.2672 2309.8183 4437.8068 8984.617 3247.8388 129289.0087 4114.3045 4848.5207 3403.4541 3403.4541 5806.3402 14047.4735 7165.4336 8924.6887 21021.832 9400.4227 5274.4865 4071.9752 8483.502 5033.4248 13995.5914 7038.927 12007.9291 6039.3592 5672.629 5595.0986 4161.8897 14325.7256 240009291 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7656.3724 6490.0506 7939.4097 3028.91 4954.6799 3283.3579 5701.0874 5707.4608 11480.493 7275.9915 12322.8361 7735.2603 7735.2603 6248.0476 16831.0178 7991.2347 9188.1539 4428.7663 2443.0225 5953.0803 7292.379 2418.1013 16167.2446 5616.5626 15001.8922 2490.5108 2795.104 5269.3079 4535.5012 222420176 tetx_resistance Virulence Antibiotic resistance Degradation Staphylococcus carnosus subsp. carnosus TM300 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus carnosus; 123812.8882 10862.6017 12323.9313 10998.7667 8054.8164 6632.4266 17061.1133 7706.2651 8479.055 12172.525 15960.0538 12573.6007 374362.3289 98572.8212 17459.1649 7703.7942 7995.4233 7995.4233 8864.6241 20474.4466 13760.431 20220.1902 19011.4442 20091.4164 7367.3672 11151.1553 19350.1926 8974.8524 32481.6488 18299.1097 16059.4489 9373.9207 10902.4586 12387.0262 6991.2481 23020.9905 254432778 FBPase Carbon Cycling Carbon fixation Calvin cycle Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 26787.2854 14698.6725 9728.4234 53036.5624 6585.7979 84549.1918 20823.1629 18869.4614 24503.4577 11952.225 10181.8976 480535.6313 6566.3963 24132.5126 32491.6465 17339.7078 17339.7078 20569.3472 19242.8531 176602.2309 13684.1463 55421.8626 50732.8666 44709.0928 8593.2428 17464.3587 39146.1139 45781.3528 27678.6124 22362.107 29149.2003 35164.5414 29186.2813 42901.7889 167175.8505 291197242 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 10856.6398 7897.1376 2907.5338 3947.3714 4511.8901 10176.0783 4233.3786 114635.1372 5367.4125 8675.4841 3430.0239 3430.0239 3591.3609 6078.275 5780.8324 3839.3206 3346.9829 30308.5134 7045.2287 4544.8596 85654.6676 8663.4076 10538.6156 2748.8429 3844.9882 4738.6742 2285.2175 254561093 nitrilase Organic Remediation Aromatics Other aromatics Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9808.1424 8910.4648 15028.457 9313.2626 6426.1156 7493.3042 9124.0595 40717.5103 6784.0639 230289.8197 12671.0295 11106.1791 8669.562 5270.2626 5270.2626 8633.3676 16814.7521 12223.1802 16219.8664 16044.5126 13087.7269 5649.7851 8418.666 19447.1848 5130.6104 24974.0477 10904.2343 20651.9927 7051.4559 10301.5567 9026.2815 6541.8652 19241.3452 62825531 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9412.4025 6121.6776 124074.7917 3946.0831 3855.3637 4106.9168 331009.0406 274584.3518 45720.6014 4473.4466 7619.0527 7619.0527 3250.845 7153.7686 5192.3802 7397.7837 11847.9519 40890.0385 7222.7314 6955.0823 6264.7028 9461.3091 68027.1856 16850.4518 13452.5756 3996.0699 57485.6475 11486.5894 52871.3363 9319.8671 374989964 linb Organic Remediation Pesticides related compound NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 12730.1705 4538.7254 52273.9406 10132.3026 3977.0082 14260.5085 3599.3657 6607.0105 8335.162 9376.3876 276557.0845 10686.1084 35650.8664 42692.8233 21981.4899 21981.4899 9706.1063 15454.7426 8771.3733 473592.7737 17609.1027 2901.4773 7374.31 12486.0843 4619.0482 19381.3001 17006.7443 11358.1032 3232.7339 6596.7218 14956.02 4289.9306 5911.3595 332531397 FBPase Carbon Cycling Carbon fixation Calvin cycle Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 10969.6288 13140.6435 475570.8057 14223.4251 7288.5159 13108.7405 6103.9525 5143.4212 10106.8374 10617.4055 4971.506 343240.6936 9730.385 7821.8348 8868.507 8183.4538 8183.4538 6963.4927 15570.5766 10965.7179 8145.4399 14255.3443 6505.2422 8937.7743 7262.7556 11933.043 8338.2913 24945.0161 13937.9399 11653.6488 5007.3709 29880.37 11533.1324 5739.7146 22013.6177 194309413 amyA Carbon Cycling Carbon degradation Starch Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 141125.0553 844082.9253 74967.9308 7202.7922 7392.1899 6181.102 6865.8573 4308.574 4845.4043 4679.0413 2437.5746 2650.8135 3899.9744 1964.0966 3031.0411 4625.9217 6530.0757 83026018 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 398706.5977 57491.5117 283632.495 24298.678 10557.4347 11493.6002 11841.4765 16587.0423 23886.1168 37468.1381 470254.0947 30260.404 28127.8626 48212.2077 25444.8703 25444.8703 15546.5228 164429.399 164188.6009 28857.4134 363078.8853 65540.5855 55653.6908 19735.0886 26051.0612 10541.3237 44845.5768 43085.1772 119309.9957 46532.8823 32955.3419 110195.4181 15333.7397 957109.8079 45169801 pel_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium expansum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 22341.3828 891487.198 8156.9065 3680.0043 5748.2648 4097.5762 8247.5834 8208.244 99265.6663 6490.6291 9359.4387 7714.3135 4805.8766 4805.8766 6981.6584 6161.4016 4936.0003 3380.7492 10703.8384 4769.709 4834.5913 3567.3991 10926.8985 18729.1707 11953.4818 4664.5866 8653.8267 11405.484 5935.598 5518.298 7709.7195 257461115 mer Metal Homeostasis Mercury Detoxification Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 993049.6571 9254.7563 5722.5797 55699.9202 5331.4745 4322.2242 5476.2189 5476.2189 120979.3714 39957.3901 3323.5914 2156.523 7612.8144 13808.1754 219666430 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7943.3372 10979.7702 14176.3263 6183.9488 4460.5964 56246.9177 6486.2346 8274.4973 10046.2095 2666.737 2666.737 11018.2819 6431.6509 6490.8732 7260.3523 2638.894 6717.7077 8648.9496 3591.9331 3804.8294 3371.4967 223895618 heparinase Carbon Cycling Carbon degradation Heparin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 38789.5368 14673.0787 25305.2226 53110.221 18080.4434 10657.4644 31892.5356 29312.2043 21540.9638 170839.9133 58569.6057 20528.1735 900101.9422 49581.5156 50356.6973 32344.158 22127.2197 22127.2197 30748.2004 56138.313 28328.1989 39840.1143 48618.3291 69831.2238 28128.9105 20934.9727 44787.9541 22674.618 162676.7166 73932.8533 45480.7237 14063.1382 25784.0049 32164.1121 18014.4223 78421.0365 1839393 exochitinase Carbon Cycling Carbon degradation Chitin Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 5370.099 5413.7301 4619.08 5209.8436 5747.2013 6215.2604 3716.8754 342822013 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 4692.1643 6573.1765 2237.9816 3861.2998 30287.8467 49398.1764 67444.979 4594.3823 2800.0579 2800.0579 7950.0849 5763.8142 473860.3273 7751.1287 2824.12 4153.6895 4968.3187 8586.8709 11103.732 6239.6863 2107.3431 4872.6145 3537.4693 2367.0144 5050.9924 170748202 cysJ Sulfur Reduction NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 4584.6725 8789.0778 3106.9254 4370.0328 3813.125 5291.8054 4121.9371 4121.9371 6727.8382 3947.3425 2181.8425 368934.8679 2281.9408 9686.6493 37421.9756 2012.8956 3621.5152 3157.6441 225194118 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4905.4593 5741.6163 5144.8594 11772.3469 5755.1578 4195.8408 2593.0599 4394.4554 2610.5869 123552.0163 4638.727 3564.1939 3564.1939 10415.5526 6627.6501 6231.4882 4695.0686 6103.9064 4333.9733 7256.864 3242.1617 10144.2708 6035.5375 5647.3264 3723.732 5006.9041 3297.3222 2674.0484 5964.1878 62003555 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 54191.2466 13122.3946 15679.4524 31792.8595 32369.2978 12390.6754 34496.9776 25129.4117 14501.8025 20832.8868 21429.8582 552174.8697 26999.0909 36950.2893 30208.5313 30040.6068 30040.6068 17443.6333 20394.2362 30932.7519 14578.7004 67243.0596 16960.0684 30802.1925 18781.7345 55854.798 123635.0312 48434.128 95239.66 43530.0399 10801.5353 24788.4698 18995.0237 12807.9567 138477.8916 333990074 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 151250.8992 62204.5275 17038.3199 137143.4559 6392.9289 58850.0592 139224.3288 95127.5497 56149.3215 156048.8517 70038.342 675830.4035 68737.7577 123084.1661 67612.767 245151.8586 245151.8586 74266.0117 80741.9608 35527.834 81003.1133 75677.7213 37812.478 51422.5101 46473.3392 67437.9223 65425.1383 199555.4743 93749.6426 98539.3888 42393.4489 90874.8125 53137.5607 78412.6479 117073.6835 260061648 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 40372.8229 52263.9283 66393.3948 32322.4121 27183.9268 10208.9758 5831.406 27345.2571 66854.9 20878.7709 34540.4023 36223.7688 432583.0425 26379.3128 30411.1909 30784.6907 24238.4753 24238.4753 22838.2036 48804.3289 22759.9355 41366.0456 34795.0851 29812.3265 13723.2329 43984.0492 31600.757 39901.879 58547.0583 24526.4625 37769.8487 15503.5342 22831.8174 25447.2729 26952.4138 25118.3679 380879318 pgk Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 6969.0087 11033.6063 7687.0638 6144.7609 4742.0485 21371.1497 1836.7925 4544.5378 14580.2835 6219.3494 133260.0835 20047.1977 318203.248 8368.5794 8640.064 8640.064 3788.1346 52220.2241 8655.9724 6438.7801 5687.5135 6843.4023 11137.6416 14031.0167 4557.8288 23825.3316 5818.8328 20567.8483 3317.4233 5245.6521 6005.1962 4774.1992 251771517 amyA Carbon Cycling Carbon degradation Starch Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 13728.1655 5260.9699 7755.8826 5190.748 3757.3907 3368.0236 10725.226 13292.2944 4227.5649 5423.3046 8204.2505 4615.2752 6060.0553 1991.6354 3204.1101 347733381 napa Nitrogen Dissimilatory N reduction NA Desulfovibrio sp. A2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9019.1008 7995.4489 13423.5636 10215.5404 10551.2579 6105.4062 4163.7375 6407.8219 8081.5916 10356.2485 118462.133 15175.6976 7283.4978 13041.1884 6340.3714 6340.3714 9334.1242 23023.4574 10538.7786 7445.5534 20501.2797 12143.326 4938.0524 6460.7281 12748.8897 13417.4451 22009.8438 7954.6298 11546.9755 7720.4592 10513.4849 10827.0628 6577.4806 14682.1041 117924334 urec Nitrogen Ammonification NA Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 13260.5522 12092.7172 6887.8625 6007.4431 3290.4406 6509.7111 3797.1868 85120.3801 97084.7949 5598.692 5349.4403 5327.1135 5327.1135 5272.7398 10959.7542 4503.4534 103663.0309 9103.1854 30909.2202 4050.0965 5012.0537 7937.8902 2585.9422 16341.4634 8144.5995 14514.0637 5075.0729 4212.0817 5209.9054 3970.7463 23001.2438 380509735 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 10856.8612 78248.3706 10869.2335 14813.7781 20138.6526 8901.8454 9355.7625 7466.4084 4248.3796 8432.5216 20843.7332 6525.7462 147722.8981 14226.6779 13849.6233 21207.3014 8976.3012 8976.3012 11020.3114 18749.219 13578.01 10973.2502 17396.4397 19724.1052 9158.6377 11608.0666 14683.0766 6073.2343 33938.3613 18303.2129 50359.309 7500.9021 20431.277 12561.2575 5025.0274 10775.8251 322709010 glx Carbon Cycling Carbon degradation Lignin Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 50503.4727 14049.1958 29531.3722 39357.3023 52085.9589 26304.8723 131061.151 36236.3397 51771.1646 33118.6393 48893.1043 191799.3158 839431.4813 168694.3675 68429.0812 31957.8749 65998.6425 65998.6425 32167.7504 83214.2205 31974.532 51193.2659 41277.3429 51843.3798 23624.0982 28267.1481 61393.106 30231.8018 93379.6591 43879.3178 59484.1477 32862.4298 73004.9658 28213.633 27400.5048 49174.3886 23491548 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. TH2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 22135.595 9543.4777 4756.8573 7847.931 33115.8402 224560.9878 10643.1078 7745.7675 9976.3937 10239.0341 4848.7555 125480.3028 12952.4515 18532.17 11640.4031 8550.5938 8550.5938 6671.2337 17680.5666 9475.8556 12540.7972 12900.3781 8824.9913 6355.6546 6921.8706 12592.5534 67854.5936 28301.6636 14587.7724 11328.4753 6676.2729 11474.8727 6478.0428 9023.2734 15667.8321 70733069 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 41495.9609 14379.5808 26040.3285 16587.2905 23178.8659 24397.288 16348.2099 9223.4319 20917.4897 24592.2205 53567.602 321583.1231 23655.2564 18895.0775 82554.2128 13708.7849 13708.7849 14157.697 44893.1993 16722.6762 17617.0378 38618.051 18395.3297 13645.9315 4157.4364 24080.2297 13381.683 109835.6838 25983.935 67034.1987 11921.8212 14914.384 65229.5529 13787.5476 25870.8895 347529260 tfda Organic Remediation Aromatics Chlorinated aromatics Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9778.5466 3872.9516 9551.113 7423.3764 4434.5842 92520.8634 5609.118 5074.2642 4092.8217 10687.2615 10687.2615 5537.1168 16223.0839 6218.4173 4964.7887 8277.9108 20805.4982 2512.7325 9296.5855 6411.8083 21971.8316 2449.3931 7506.3852 7606.8435 3491.008 18955.3317 5310.5623 5018.1015 5708.8798 285026909 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8042.2484 9214.8907 26722.4055 3487.7993 2670.1618 3932.3324 2644.16145 19654.5983 20256.5547 20256.5547 3427.7454 7898.2403 5796.76 8446.2768 6636.6898 3333.3227 3206.6235 7097.509 6818.4488 7622.0425 8526.2294 3981.6322 5089.9902 3398.6316 3052.0251 8022.1158 356643395 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 81584.7974 3502.8021 3602.6875 3777.2697 2102.2807 312210542 ligninase Carbon Cycling Carbon degradation Lignin Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 371022.1261 107869.5201 99983.8169 1351498.0307 625190.331 418175.2957 169357.287 245338.927 79570.6841 95060.7658 359399.8656 299411.0906 2777890.1373 141796.0442 238320.286 216405.3218 185330.3413 185330.3413 160055.0343 171302.8547 133842.7643 169573.0851 387581.1092 547001.0968 100299.5218 190594.6593 199350.4188 144037.7877 340193.3982 124958.7211 215934.6864 131473.9082 139997.658 195707.6318 113177.3649 139044.4519 17131658 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 473562.147 25343.4804 109307.6003 109780.9133 86490.3192 18288.9288 110246.4305 202465.4018 114757.1155 136319.1359 199803.0529 171114.5685 3635094.9361 170954.123 179187.0369 211263.5914 231852.2488 231852.2488 249044.7189 167635.751 98854.3555 442792.93 189226.1448 224574.4782 85462.342 92762.3224 267902.1068 86777.0977 323382.4954 145807.8583 193497.8939 80530.966 136716.6582 138333.9328 142369.5013 298263.8214 34604741 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6745.4664 5316.1614 11178.8515 2346.5316 6112.8516 8161.8959 5202.944 16202.9465 95221.8964 13253.8 39387.4879 4088.7728 4088.7728 3431.4481 10619.9942 4431.6997 8090.0073 8792.3755 6582.1791 5400.1583 9121.5251 4489.1073 9556.6792 12067.1081 10833.3994 4024.0548 5513.1144 5135.6712 2714.7208 7750.9241 319646494 cysJ Sulfur Reduction NA Bacillus sp. BT1B_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 17054.5266 28917.6059 13474.7527 6764.5776 26604.2875 26376.072 31551.2558 25672.5227 42360.7009 22159.3889 19194.9879 35783.1985 227428.5 30138.4711 19395.7735 42942.7196 18578.121 18578.121 13497.287 67525.4052 14370.855 35516.3311 32614.5971 29711.8268 16886.681 34074.1142 24858.3375 21442.4553 795136.6051 36229.4806 29430.2618 24470.8727 19463.7942 44329.4841 20345.3106 25685.8972 146342696 urec Nitrogen Ammonification NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 76980.5586 30044.7243 16437.4753 50777.1519 15214.9098 21127.5226 42733.1351 18050.4157 166463.9283 119887.4735 84910.443 864797.1885 36144.2464 77299.5279 124016.5451 46542.1633 46542.1633 22667.7212 133388.7728 49217.5706 35646.5218 94982.7553 37130.3918 31263.9059 83404.1827 44877.8273 69683.985 124800.7603 45392.3143 65441.5382 26537.4129 45793.1327 55611.7777 23876.447 148019.1116 297625298 norb Nitrogen Denitrification NA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 3942.0925 6810.9085 1774.6019 3901.2739 7333.8147 3042.6291 3042.6291 2676.4972 3671.0712 3774.1828 6382.4134 2745.0317 2454.4761 8101.0897 6468.777 4413.3347 4144.612 2182.5028 4477.2373 99030553 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9225.8705 4562.4578 8241.1423 3174.6871 20805.3961 68086.5822 5407.3599 60535.9352 5897.4745 7872.1293 3495.1285 3495.1285 5704.9038 12304.3638 5790.5521 9870.6345 6541.244 9427.8903 3706.3587 7232.1732 8053.4544 3681.4949 16205.8648 7375.0079 14507.6857 2633.089 8058.1683 7352.4697 2451.3514 4915.0654 270506343 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4712.7115 4425.2228 5731.4616 2534.0562 3640.5332 6228.5643 5160.8845 10685.3775 5021.7271 7140.1299 3353.2126 3281.4845 10026.2473 6263.0102 4143.5637 3961.0653 2416.2537 7702.683 83316998 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 175691.3569 37587.7711 155461.4759 1812066.3017 1239864.3406 100151.8198 159377.1208 149940.7904 240894.72 173573.7114 302779.7049 155965.399 3733096.5032 346162.211 164416.5483 242598.3155 277405.0058 277405.0058 86913.1173 365763.0154 183289.358 131530.6501 280203.2239 346701.1808 185489.4499 172329.7656 203454.1391 224350.9396 279733.2241 318434.0315 168184.3812 133590.1284 198310.6188 198001.1452 69351.6716 160292.4369 363714261 nhh Organic Remediation Aromatics Nitoaromatics Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 32047.0521 6330.7249 13269.5841 3623.0069 9951.0989 9111.954 10002.37 9917.1062 4619.8795 83617.6541 8636.3977 18794.239 6107.8928 7544.409 7544.409 4838.6441 11975.4947 7542.866 11240.5859 7176.8366 10360.5442 5592.7145 9202.2698 11041.573 3848.1238 21288.4002 31882.3534 20279.0027 3337.2903 46017.759 11450.3707 6195.9927 12972.3641 302882434 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 39866.3612 19464.0295 13287.9771 8658.1545 12433.8856 12042.0788 14057.41 17239.0454 26523.7497 25469.991 381789.203 79339.0244 26004.8358 15449.916 16831.9297 16831.9297 12706.7268 25609.2714 41767.2697 27382.7766 20993.1472 28902.1076 12783.2621 10516.0868 17158.4603 11644.9966 42737.5394 18760.7772 22355.1958 8391.6964 15511.8019 15753.7857 10759.4667 28562.8994 85717282 pchcf Organic Remediation Aromatics BTEX and related aromatics Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 11236.0364 35647.8108 60639.9686 21388.7526 30971.7926 23130.7492 7384.9279 8206.5804 5132.3523 8276.911 7071.8447 203936.2313 13300.438 5703.9281 7404.9659 7140.7101 7140.7101 6779.2852 9350.3612 7984.6921 3652.1347 9039.1339 10860.5149 3838.4454 7187.333 9990.468 4471.5828 13920.0545 7111.6057 10950.2022 6200.9962 6359.2437 5353.9133 6576.436 6565.2326 77820048 nirs Nitrogen Denitrification NA uncultured organism 13660.6262 8513.0976 11035.7381 28343.8385 3593.9243 7815.0903 3652.57 3274.4704 4550.1838 2372.8194 3238.2913 2126.3755 5185.3041 292606269 linc Organic Remediation Pesticides related compound NA Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 31397.2352 186818.9034 17578.7199 14814.7586 28087.3956 7349.4567 30162.1096 29602.929 52799.5877 23057.8748 61429.0097 38173.2674 919944.4878 36433.2413 33642.1897 82916.3367 106373.1962 106373.1962 36900.8305 73120.4513 46644.0476 30585.6903 51140.0006 29588.9764 21344.6265 18366.4703 52460.0015 101670.5746 1216277.5435 50419.0322 61122.3495 20330.2312 427086.6402 26090.9441 23668.8294 51936.7632 296532688 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 20532.0485 12770.6375 21665.4421 21854.6999 7230.688 11026.0486 18836.6842 7664.1306 26409.6608 26720.8602 18048.2281 484428.0694 25973.2617 34056.7838 55067.9511 22733.7202 22733.7202 14680.2296 40763.2729 34369.9421 23071.2654 60307.8938 24450.4893 133218.2392 394866.1928 45740.9105 12158.1803 38401.8533 25288.4643 35048.7959 9960.7767 20932.702 39164.7616 11343.6445 33658.3495 343927017 terc Metal Homeostasis Tellurium Detoxification Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 12419.473 499076.7476 9012.2325 7924.498 30666.901 5018.7295 3574.197 8369.5979 10696.6547 7020.5183 9176.2453 13234073.9629 8737.8007 11527.5187 5416.332 16006.35 16006.35 5904.0174 25348.4779 10927.2281 55522.1916 6834.2268 2488.4022 9607.4769 40657.4581 22653.9887 16630.7011 21064.9676 12546.5732 5943.9141 10149.15 8987.7767 13826.564 109819.9553 116620953 arylest Organic Remediation Aromatics Other aromatics Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 73974.8464 11092.2178 335478.7157 51364.7755 120897.5726 6866.8435 24858.1819 51253.7959 63975.3768 31122.2161 48546.4869 38600.2976 723309.414 34147.6736 45530.212 111005.3288 40404.519 40404.519 27047.6047 115805.9242 31950.9033 90413.3844 95012.5931 78306.437 54529.6855 31578.1142 36112.9062 41036.6035 135419.4117 88810.5585 42680.872 21663.439 48107.4651 42885.872 26573.1756 39572.9467 422314537 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15561.2558 9882.1743 11738.6602 91689.1771 11211.149 4218.2351 7906.7068 15011.8073 13762.8285 338341.2205 10733.5902 8485.148 6152.5709 6903.9174 6903.9174 9893.052 26312.8535 8477.5713 26789.8804 23281.818 15617.7512 10315.3953 7007.3467 14509.3272 12552.9374 38607.9163 13385.6593 19309.824 16250.3103 51551.1841 10388.3764 5752.0002 18328.3347 374434736 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18108.0404 4021.6773 10082.1213 5201.7415 5018.4913 5903.4297 3456.4075 8468.2683 6238.8623 5488.7836 141125.831 25064.5955 27191.9747 13814.9178 9651.9222 9651.9222 6105.4131 25502.0621 21990.5765 7778.0387 212768.0051 6805.6155 7807.8658 17172.9898 6984.7678 21250.7512 9111.3064 16685.7383 8786.38 6256.7423 8002.5608 57360.1652 9385.4317 431824269 nosz Nitrogen Denitrification NA Pseudomonas stutzeri RCH2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 25130.6786 12602.8951 20279.9983 59715.9412 11164.8797 18154.7613 22126.9607 21807.4116 28598.2754 23817.8932 21542.3185 581449.2267 29729.4694 26949.3655 25975.1371 25303.1893 25303.1893 11854.6442 41971.6767 21085.9871 17361.3017 36730.2993 18536.5039 15928.0875 13793.4581 31840.9695 56625.7418 57114.8791 30370.9219 40715.8003 14204.5114 19634.376 50134.0451 29494.5164 18467.1363 9716120 urec Nitrogen Ammonification NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 18364.6333 41033.4356 75837.2591 48407.5639 7246.6736 14700.7971 17139.3676 34538.729 25256.9127 26624.9399 56144.8552 774963.537 22075.6399 33663.8711 28975.5063 22047.2241 22047.2241 19289.6291 75582.1776 13696.5841 35909.2141 21447.3064 19163.7925 10876.392 21248.5276 95154.5743 16916.6216 54137.5714 18453.9882 33599.9773 10137.7876 18240.0823 55100.59 11547.7013 16761.2533 56695068 rd Organic Remediation Chlorinated solvents NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 28931.4339 16562.4733 9728.5479 22602.1877 6109.5564 5856.8602 77445.6519 26501.2328 31036.0575 25777.9153 22776.5078 650275.0617 32619.3573 18834.2998 62305.519 52067.8283 52067.8283 18997.5589 58460.9529 36630.6545 14301.8851 59873.3113 51050.0889 16064.3204 20961.1299 33228.403 37716.5756 79309.2053 45542.3911 49972.7121 13685.7385 26365.985 30344.6845 23538.2653 16849.6535 302463166 cmci Organic Remediation Aromatics Other aromatics Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 132029.3664 39531.9437 42277.6248 64477.3264 80162.3796 130051.5439 73501.767 153801.8711 87844.7763 78441.9172 76755.4425 89459.7003 5350828.9669 154751.1975 145992.5473 102939.5533 81656.4337 81656.4337 54045.3563 209100.3317 94643.6991 152890.1281 202852.8184 76327.0114 65918.3596 88407.3083 108424.1544 267590.8771 267039.7064 166587.9541 139928.1998 71847.2672 88302.6729 110549.3581 98531.7463 155764.7061 302475073 nagg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 6737.6255 13772.5156 21530.062 8477.5711 3193.1174 5965.2963 5484.5043 2132.9773 11981.8283 6550.92 9456.6246 6247.5799 6247.5799 6176.0819 14536.5988 7573.2914 4818.9101 40252.8963 5125.7989 4591.8611 8213.0115 18390.5808 21497.8136 80742.1298 34501.3371 29148.4525 16624.7602 8949.4895 11438.7564 5500.2906 6053.0174 106635938 catechol_b Organic Remediation Aromatics Other aromatics Rhizobium sp. ZJF08 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9947.0561 6397.117 8051.198 7694.1761 18545.2337 9092.5912 4542.4107 8068.8433 11528.8682 10470.6168 189791.8245 8674.7044 11188.9979 7123.7709 8322.486 8322.486 10487.9319 19878.9371 13642.671 9719.2347 14595.2743 17271.6084 7737.385 11292.2298 12480.2913 6068.6378 20991.347 14130.4993 14418.7245 4732.0571 12105.955 6841.4408 4532.2307 19468.0941 229473037 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7957.3708 3653.5051 6537.975 3606.6614 6274.9815 7089.6098 3587.0892 106864.909 4306.5148 13234.8233 2371.1163 2371.1163 4064.5595 13541.6505 7279.3856 7696.492 9785.9518 14907.4905 4562.6114 12449.4247 11732.7377 5019.82 25226.4829 6366.5094 7745.8137 3488.817 8316.4423 7820.4925 4483.9563 23861.4919 118568740 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 5691.0209 1998.7686 20108.8731 12406.5212 3781.1262 15435.159 35284.5717 70470.4118 12815.6074 21367.5902 4221.1894 4221.1894 4822.1202 22572.7362 6994.125 16826.1592 67946.4993 6076.9035 11107.7305 5252.4608 33666.6966 15166.265 11495.6562 14357.1473 8336.9739 14100.136 11262.8128 55060.6354 7891.5186 19548129 nirs Nitrogen Denitrification NA Azoarcus evansii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7429.1358 62025.8565 7344.0129 2892.1212 4502.7092 2246.5142 11788.7372 8230.4772 3438.9061 106941.2766 6744.4496 6496.4678 16291.5094 4165.4045 4165.4045 3721.1372 21189.2123 5009.6606 11370.0941 9435.9648 4563.1236 2761.8881 4415.4444 6108.6138 5577.0909 12697.6976 11944.9425 11616.1565 6966.0315 4728.5208 4155.1246 61275.2188 9643.1571 329849923 terc Metal Homeostasis Tellurium Detoxification Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 7624.8901 20189.0104 20481.6052 17870.5438 5883.3994 3881.656 7152.2794 14635.1965 5212.9057 10851.5 20335.0798 345753.8929 7107.0135 10168.5311 14860.5187 5003.6547 5003.6547 4501.2103 16495.678 8255.6171 16298.9531 5034.2832 13130.6127 5118.9925 6516.5009 14449.5742 4481.4485 18448.4494 13416.6971 17148.4446 4770.7456 13287.2233 5245.1953 3637.9004 13416.1431 336012979 xylanase Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4325.5717 12146.4423 7994.9777 4201.0429 2594.8947 5089.6608 30527.2435 3129.0148 76592.5735 3876.302 21475.0262 4618.1371 2683.7839 2683.7839 8719.7972 6354.5312 10250.2798 5539.6954 2620.6582 3333.561 41504.8351 3322.5788 14358.7203 7090.1993 7387.9334 3128.4099 5064.5461 4391.1511 4058.2205 6024.8818 91699612 cmci Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 10787.6614 6234.6688 12483.4714 3883.4549 7001.4029 6660.21 10551.599 14114.6767 11114.2432 103263.1579 8190.5147 14555.0522 6741.9432 10308.8741 10308.8741 5136.2874 20849.5968 14910.2973 27283.1221 12827.325 15769.0564 5445.5149 8717.7955 12417.1779 10688.7122 37481.492 12158.4983 15344.21 6211.6386 10099.5764 61379.9544 6607.7342 14364.8454 322834315 chitinase Carbon Cycling Carbon degradation Chitin Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 84750.0973 46390.8207 8484.7485 4898.0754 9264.3539 6413.0561 11177.2179 28174.444 16887.0454 49176.9608 97129.5147 13766.0714 27859.7783 21862.2393 21648.6945 21648.6945 9341.462 32130.2659 14888.2272 49839.1264 19574.369 6635.6708 15482.7551 14966.6544 15507.4738 8330.1386 28167.1938 66616.1211 23442.8993 15963.6028 23325.122 29873.19 11799.4075 29668.6421 307543750 xylanase Carbon Cycling Carbon degradation Hemicellulose Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 13018.5467 17833.6522 5600.4122 7713.1034 6141.1452 14785.3432 23919.4187 4989.3603 5897.7346 15084.1922 15595.4394 196855.8313 37263.3405 10638.6206 6320.6134 6285.4813 6285.4813 11677.224 16544.7419 11202.0041 13918.1999 21306.5272 14953.6291 7731.6108 5461.8711 14206.8804 9369.4046 17184.0917 9473.4938 13971.7809 7198.012 7103.8085 17771.6089 13279.1255 17135.6219 57235066 terc Metal Homeostasis Tellurium Detoxification Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 8829.5584 5048.4244 103875.3589 7041.1405 5665.6258 3502.3352 5561.4639 20265.5448 7373.2777 6177.9389 153352.5912 8336.9268 12891.8445 5962.6139 4514.4412 4514.4412 4718.0517 12985.5167 8213.7411 52006.8865 8904.3699 8480.7866 4867.0039 4476.4611 9005.1623 4294.0424 16039.609 5120.1316 10403.3978 5357.7217 5570.0393 8163.2715 3269.0883 10141.5341 363616017 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum sp. 4_3_54A2FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 19109.9627 9100.2483 16297.6274 51085.2682 10482.7752 13767.7568 5254.1871 14885.6506 28007.2741 19518.7641 2811717.1616 54011.1044 36925.7633 26614.2785 12799.2209 12799.2209 11903.1683 43699.4975 20277.1664 15606.3548 21473.0837 57952.3957 9211.1789 12909.1976 42008.2478 47704.6245 382454.6006 29561.0577 21376.316 14587.6571 19254.1194 10954.1833 18030.1199 19778.2236 294884043 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto6_4W superkingdom:Bacteria; 6649.6915 11466.3956 6347.9126 5097.542 7771.3667 10682.1749 15524.492 109865.6561 11068.3546 182828.5953 2286.2602 2286.2602 5836.9147 15970.3247 10328.8631 8992.6174 21526.156 13035.0545 4376.9044 6005.6077 13153.6387 18878.8387 23768.0876 9899.1943 24224.1462 6936.3933 7354.3664 7760.4478 7497.9745 11677.5905 337748876 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 24217.4253 20030.5718 22936.1776 8876.9111 14589.5555 23030.5831 9366.9198 18100.6991 29376.7337 11876.571 438921.049 28409.1858 24941.672 56328.5854 18157.6773 18157.6773 13167.797 27250.3 25052.2056 24213.2305 32483.0535 62394.3867 9498.5066 13263.6684 28156.3334 15670.4641 50026.5397 24188.9636 32934.1583 10093.8299 18136.1922 17612.4759 10576.6568 31531.5154 109455406 atzb Organic Remediation Herbicides related compound NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 19786.8348 13689.8882 60323.0025 141664.6084 12867.777 23010.3447 27735.1876 19571.0886 28283.395 34787.1171 344417.1241 19636.7981 46543.4713 25091.9735 21720.0579 21720.0579 67403.3592 36650.7703 20472.3836 112628.8139 34420.8884 22572.173 24313.81 41801.7386 34249.1813 38531.1455 77638.8362 57375.5901 29742.7203 10699.6586 26035.4786 20081.6646 49911.054 34723.3339 317132932 amyA Carbon Cycling Carbon degradation Starch Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 6477.352 155901.2905 4874.7563 129294.4145 2714.8675 74859.3031 4911.2102 15389.1537 5457.3338 5457.3338 5482.0529 20219.6864 2147.4774 4274.8982 350275027 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 6229.2647 9959.9842 3815.6026 5024.1775 3542.9455 383605.7285 16216.2797 3010.2827 3010.2827 6414.1716 35786.2447 44892.127 69801.8655 4165.7842 20196.4235 10095.3542 28942.104 8480.9663 19229.4343 6550.8311 20671.3313 4736.1225 2488.8714 8470.288 332524184 rubisco Carbon Cycling Carbon fixation Calvin cycle Rubrivivax benzoatilyticus JA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 6336.5292 3238.2934 2504.306 2820.9885 2828.102 4793.0215 2387.9374 96047.9456 6361.4701 3745.9738 6539.1562 5155.7456 5369.6704 5391.9959 6008.7065 2741.6861 4233.4143 2406.335 12024.6119 7045.3003 7074.5929 2669.2055 2857.4501 4054.4334 2083.4719 4805.4696 41583400 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus johnsonii NCC 533 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 35873.8394 17700.1487 217119.6966 50778.6449 30300.2125 12549.0864 43087.3931 30544.9926 22670.8961 31892.6869 34123.9166 21338.6469 923340.3119 37720.0788 37386.9237 39776.8767 21785.7664 21785.7664 27109.6826 37191.6464 32799.2174 728084.4668 50941.7332 62192.277 14666.5354 14637.9994 39004.6895 13130.1769 68344.9885 33959.2963 39264.9774 18669.9649 18322.71 21713.113 16360.2121 62419.9251 46915039 ppx Phosphorus Polyphosphate degradation NA Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4444.2784 6325.0941 8561.3612 2298.791 2976.6109 2405.4136 94371.5819 4064.0814 4059.538 2334.7377 2334.7377 4971.6458 10080.5868 3240.619 6529.4275 6178.264 4171.391 4712.8968 5601.5434 1991.9255 4671.5714 5258.2332 3309.9298 357078325 xylc Organic Remediation Aromatics BTEX and related aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 79277.1855 72293.9265 15128.3588 33040.1492 9852.9696 820058.3114 384017.3178 56569.712 60876.7156 79839.9901 52123.1511 466838.9448 33161.6869 46634.6583 37550.5787 34092.6704 34092.6704 55208.1077 56830.0949 29956.5115 70639.134 153280.2911 45509.4124 28144.4299 32108.5209 53945.219 58553.3774 97406.3083 79040.3028 51040.1693 46653.916 45810.0624 65686.4316 168464.6866 105798.7401 358449371 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 8182.7216 4885.2039 2976.3443 12349.0056 5097.8768 4678.3712 8751.7608 134925.4766 8439.3403 24988.9837 8855.3139 8855.3139 16700.4752 6207.9421 5203.7941 5072.1847 2687.6356 5336.3809 17044.5983 3362.9553 18292.9476 7273.1316 7250.292 3497.6633 5268.9009 23379.6137 4558.6808 5980.9178 139003556 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 14045.5814 23104.1642 11038.937 19320.0595 6357.5519 7399.9594 4737.1356 10339.2968 36037.9167 79627.8724 7241.7896 90971.4344 7416.8219 7502.8152 7502.8152 5065.1437 7599.8062 5762.6715 6543.2164 2857.3138 6336.1515 10409.0278 7517.1613 35408.3941 9273.0992 14793.9723 3540.1822 8990.3003 12117.7135 2673.9461 7418.3611 114327573 Sir Sulfur sulfite reduction NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 5083.4514 7149.3247 14299.56 3384.2873 3025.3635 4335.4389 10695.7738 92438.7426 5888.2202 7362.7043 43560.7797 6927.6315 6927.6315 3575.9063 7372.8724 7186.3381 4322.6817 5499.0868 5119.401 6837.2512 8238.0991 3789.5994 8433.8623 3995.6261 6298.5063 2228.8518 5287.4291 4098.9861 2689.4514 8681.7267 148657307 mcr Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 9441.5777 4507.258 4667.7083 8375.7282 9788.2809 10171.1994 5514.297 112825.2498 9152.4507 8770.9572 4740.65 5402.7482 5402.7482 4133.1366 17529.4272 5131.9188 16153.2228 9349.0055 8369.4644 4775.0847 5688.2882 10553.0004 5031.782 20807.6678 16801.8453 9762.8867 5633.1518 9557.9963 6716.0219 3912.1657 11040.8344 260651430 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 7055.7496 5384.08 8123.6774 12970.3024 11207.7587 22238.7159 4632.0188 8696.9643 5284.5266 4804.2631 136914.6473 11024.0409 19407.7463 6880.1038 9804.2611 9804.2611 2818.2664 12447.5524 8471.8201 7134.3895 18574.8257 5480.7442 2437.4645 6330.7141 10487.964 3745.9143 18867.7883 10411.9328 11822.3657 3425.7258 6985.8788 15241.3861 4015.6031 4668.2873 332078270 ben_bcla virulence NA NA Stigmatella aurantiaca Sg a15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8282.5051 19823.1665 14533.8795 46095.4654 9860.929 8559.1931 6255.4766 6322.2663 86273.6376 29754.1782 3823.1795 4544.8089 4544.8089 9477.2837 3982.2745 5463.1144 7385.2493 4004.3733 3747.9991 3970.5291 7262.2037 5437.6594 12101.7739 10058.7486 26719.8056 3107.2173 3475.3295 15773.6602 6074.9716 307823166 Sir Sulfur sulfite reduction NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 5048.7417 6354.2332 161124.4587 12284.1374 12284.1374 9283.4168 8826.1905 45047.2354 12896.5242 44669.618 27254.9739 5325.3378 222543222 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 8154.6439 11028.6779 4452.2164 19548.5491 6720.4508 5355.9475 5229.7292 3626.9983 5105.5519 10741.3221 107885.9027 8784.9265 9050.6685 22063.1794 7624.5631 7624.5631 4137.6542 10217.5745 5978.1523 4098.0585 5034.4687 4876.4281 7291.6176 2821.6249 19599.0936 6699.0497 9690.8774 2208.7513 4713.1113 4293.3717 328886949 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 12314.6341 13111.754 70058.5729 21176.6614 21531.5521 7098.1038 5313.1737 12199.9371 3131.4644 13848.8743 13476.4882 11793.6761 2078702.3693 16915.848 10913.6819 13160.283 20061.6767 20061.6767 15046.3693 21683.2587 34095.817 19754.6616 23046.8714 12834.2172 15347.1896 9954.2801 16604.6531 13889.807 35117.5343 13177.568 23179.7764 15376.1819 41672.5264 46386.8206 9581.9928 36972.7179 270298222 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 6165.1709 8492.9935 21280.1319 2422.3964 4086.39 5583.2095 58239.3576 16375.3855 5036.7763 2505.2559 2505.2559 8778.6246 6051.7741 6657.4949 7425.1671 5369.7827 3522.8941 3116.0631 7189.1516 19598.3307 7996.9547 11028.0987 2434.0141 3545.9779 3912.8639 115390593 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5390.1554 13563.3231 16218.9589 20289.0633 9533.6768 4875.8958 9400.847 3154.3726 146203.6108 3911.658 4594.0403 2682.3169 2682.3169 12889.666 5034.405 5567.3061 5706.72 4287.772 5000.2203 2396.953 6614.256 3195.3219 10953.1225 3981.2148 6800.7697 2401.6898 6425.2507 5449.2456 2703.4276 347523400 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 15607.6978 9911.1668 5182.0676 12100.9924 5581.4253 4163.2517 10664.3358 8471.7411 10782.8034 19468.2677 9441.8217 1328022.6282 11797.3991 11223.9984 14453.8534 6798.8488 6798.8488 11058.3599 15153.3033 10723.4112 80932.9754 23564.7743 11371.9489 20692.4517 12974.8813 20245.6308 6128.3437 33360.8628 11244.9838 12612.9704 5070.4259 21296.8362 23634.2573 6042.6255 17604.6841 60593164 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4253.4677 17312.832 5079.9929 2211.4829 4994.2589 103542.497 5366.436 7170.014 6890.3912 6890.3912 11647.0118 41382.5535 2176.2335 11897.5016 2718.3148 9645.6256 4611.3612 2576.2606 6516.1714 297204046 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 15853.2226 11355.4088 11731.6874 193775.6353 7986.1637 39669.885 10546.9573 13228.4068 13925.8311 243065.891 13398.176 9236.6384 18428.2143 12199.4913 12199.4913 12052.2056 20238.6242 7215.4093 13087.7396 10348.5738 18947.2693 10805.8218 8790.8288 14318.3797 15591.4376 29229.2701 18107.8323 14075.4625 5609.6732 14462.1042 7984.3814 20975.8516 15093.4873 336399214 amyA Carbon Cycling Carbon degradation Starch Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 21690.4351 7152.1759 16542.1144 15866.7553 5879.0956 4881.0627 10125.0104 9485.964 132364.4129 15294.6317 5273.2776 6892.7294 4977.8377 13687.732 5945.0481 13906.9224 334204.1704 8278.3967 4675.1135 15781.0569 11630.5637 4488.3111 22540.8682 10195.4213 14545.655 4639.7568 10150.6124 18107.2801 11694.2051 12530.4021 76559222 arsc Metal Homeostasis Arsenic Detoxification Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 5244.2579 7740.9992 3985.3932 4088.3194 3997.1473 6222.3139 7230.216 2933.5112 93486.5503 8978.9308 17789.1078 5974.191 4881.5678 4881.5678 3169.877 5926.5519 5407.4906 30997.5809 8434.1561 3036.2488 3557.1251 8283.921 2196.8795 14152.7272 9012.7308 11360.1549 7228.9965 3247.9539 5880.7097 7557.5099 11195.8953 295664292 tfth Organic Remediation Aromatics Chlorinated aromatics Paracoccidioides sp. 'lutzii' Pb01 NA 5271.2559 3207.6013 5717.6885 4109.2103 12497.6985 5849.8891 4896.1485 2382.4504 2382.4504 3363.1282 6734.4874 5383.1375 6542.6011 30285.8797 2972.8361 6704.521 7439.2068 7575.9527 2638.5047 3491.381 5144.2747 3710.5427 358063379 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 8814.039 11888.4558 12671.8978 10474.2275 3342.3229 135886.9046 3148.8411 4919.8145 6299.4699 219462.5358 5411.972 5814.7516 11086.5739 8313.899 8313.899 5521.0384 10020.8424 7760.7359 6012.1983 10394.9154 10470.1509 3370.9455 5346.3175 9423.4937 7358.2796 16595.3637 5870.2104 8537.9346 5517.0997 9342.3464 4807.6576 5127.2084 8795.2689 29604442 alginase Carbon Cycling Carbon degradation Alginate Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 50451.1111 18109.6448 191344.0763 92168.018 67500.9536 21855.2875 30173.757 44668.6515 21784.1615 31639.3707 37513.9413 47451.5413 1012243.9231 42306.4397 41634.4158 43587.6256 73575.4012 73575.4012 52171.2571 61044.0371 41424.96 275262.8776 65761.3016 47534.8738 34836.1337 34822.9252 50908.5707 31294.2876 103084.0184 57170.4947 46601.5397 20759.5053 38001.4674 37591.4501 43082.0616 152963.433 392413632 arsc Metal Homeostasis Arsenic Detoxification Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 9460.6904 5868.1879 8598.0744 3181.7559 6236.8268 3663.5987 12235.2676 12235.2676 3726.0877 8280.2803 5617.9479 5227.9971 3063.0736 3101.56 6469.672 9658.6906 4334.288 6950.3652 4013.4365 2980.9187 4610.543 3596.8643 6269.3317 90581336 cysI Sulfur Other NA Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 39053.7212 5610.1119 10954.951 16030.6673 17765.1348 7175.9971 16616.5948 374257.9296 111949.7315 313162.5444 12785.1121 13265.9781 179810.5175 5859.0066 5859.0066 5024.4329 18891.733 7585.693 208058.5435 12640.5596 40876.275 6244.3648 5402.5831 15318.9394 4974.966 18229.0325 23889.8931 15517.0495 12256.9856 353576.3487 7697.9276 7514.8963 17200.5399 260218298 cysI Sulfur Other NA Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 85466.8246 30895.7533 351313.9439 120272.5045 72995.4886 117810.098 40668.2761 268306.6979 85242.5277 77889.7871 70181.1985 59504.2138 1002854.6756 73765.0173 241005.1661 76222.0917 56017.747 56017.747 64974.8999 60328.8398 72864.7018 65056.573 60789.2016 43231.4512 49934.6656 125678.7873 89802.7247 39896.3009 102646.011 168879.0992 121883.2794 46100.0795 89487.68 86082.2933 37113.4804 165607.4856 214045228 alkj Organic Remediation Other Hydrocarbons NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6144.518 6962.9985 30189.8874 12479.4071 3137.6038 17866.3064 8286.4897 3980.1412 171972.2464 7353.2765 7284.7782 12167.6224 7425.5454 7425.5454 28438.5821 12674.7215 10779.8853 5889.0649 7786.8027 27881.4126 3173.7098 7864.5492 11970.177 7465.8304 48871.2948 6533.3147 15797.5522 6176.5706 5883.7789 22126.5026 6054.8031 6519.6917 115423719 TIM Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 8543.2211 6527.2413 74947.747 3942.8343 13092.1659 3052.0382 9824.1833 8183.4342 7512.6715 139719.6051 8629.235 8152.4962 35892.5765 5570.2503 5570.2503 7070.9415 24517.4834 9103.8146 5459.2152 7944.1536 7356.4717 4582.7 9053.531 28471.1832 5778.7029 22505.5417 18152.5592 13679.3301 10976.1749 9016.2577 6114.8043 7080.1671 8899.5613 357408389 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 1088813.4997 799811.2231 835662.2145 1077720.1679 2973757.4829 1934296.8399 578782.6146 692619.7316 659505.7515 623223.8472 656595.5223 392872.7593 15253133.8407 799920.6212 798570.4801 1407918.2472 652433.3658 652433.3658 442420.9589 509952.5026 421019.4784 663801.7084 787254.0915 1281319.2539 292962.8076 374510.3418 718502.7069 289380.1833 1051291.823 544995.6084 598668.2447 345022.6674 331033.8688 364508.8 251540.6491 1129215.0173 114564354 cysJ Sulfur Reduction NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 41700.9564 3889.3851 2900.5244 3145.1739 5037.5824 64207.7247 7397.0929 5165.8786 2971.632 6536.4931 2310.3632 15040.7767 1996.8106 2407.0153 4795.3328 353218227 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 48948.8222 7865.923 6930.0205 7922.1114 5089.4527 12598.501 4509.0254 16813.218 19982.1423 25148.0939 42246.8515 178484.7257 28901.2969 13275.8954 14719.1616 27523.4356 27523.4356 23148.2814 26778.1926 23356.0727 219681.392 43695.0678 18743.7067 12069.9123 11680.4368 12977.4331 7309.8527 55738.0989 22435.9288 15574.7202 11370.3333 23136.838 20923.2368 9753.678 19598.8596 303321391 badh Organic Remediation Aromatics Other aromatics Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 28361.049 10187.9814 8991.1589 91582.6389 19424.7717 11375.7783 9133.0862 11585.172 16727.9621 21901.0797 35873.7328 586392.0773 18800.6722 22905.8819 19763.4079 9840.175 9840.175 17219.0979 31379.2835 20318.3542 18692.7522 31327.5959 34972.4829 12455.8134 12471.227 25058.0153 13402.1885 50879.5909 16425.2578 25380.3409 86526.0007 14057.7985 31581.7525 10149.2456 23594.5421 395774098 badh Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 13544.6797 10339.8001 19101.5545 6033.7047 9675.4439 4627.0287 8693.5719 15117.2233 12513.2747 278257.4993 8009.4695 11955.8642 23610.29 13961.086 13961.086 15512.2213 26060.229 7427.7754 19804.8076 14291.0337 4988.5225 3913.1968 9700.3254 23476.3339 11230.3119 17336.4986 12601.943 17410.9873 9561.6369 9106.5875 52579.7698 8392.5217 19936.8478 126178328 mcra Carbon Cycling Methane Methanogenesis Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 19596.1504 8431.6036 4306.5799 40020.6871 8903.5484 2912.235 27256.2206 3149.234 11372.4527 24783.5284 5988.6946 458761.1593 26065.7762 35611.3004 13340.7614 11390.3565 11390.3565 4392.4897 32778.6256 4521.0487 3743.4364 5447.6128 7089.1336 6872.0612 6576.7671 13505.8127 5384.7323 14261.358 8891.236 12836.2791 4601.5743 9162.6698 7704.6326 2547.1428 12897.5547 359460684 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 6766.1128 10048.1278 6770.9497 21364.2683 4534.1088 3063.0908 2401.3313 4811.171 9327.5111 7712.46 72869.3511 9619.0659 14785.4365 9789.4474 9789.4474 3229.1324 10358.3005 4866.8749 4996.7152 8559.0133 10157.3919 2177.9394 5491.6595 7190.671 12007.4239 17671.0054 3760.336 7939.4277 2293.0018 11415.5631 11098.6958 6052.7302 6714.1803 225870292 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. equi 4047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 4059.8951 7155.0727 120563803 dsrB Sulfur sulfite reduction NA Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 34090.7871 18766.1569 19120.8424 43483.9138 22562.1117 19096.4861 19015.8756 10719.151 27138.3264 41000.1805 18415.4432 553889.5101 30652.697 29373.6326 17477.9125 22308.8169 22308.8169 16284.1854 38901.5968 22008.7382 65133.8032 114113.2601 42376.4048 15609.4892 19537.9982 48832.7964 12552.1726 51318.8102 36900.8054 38894.566 19658.7416 19895.796 42632.2144 14992.4505 46108.4686 40804948 phn Organic Remediation Herbicides related compound NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6374.5769 5863.7662 4484.1377 3341.2683 2351.9274 5361.8464 7884.0836 2786.1982 76496.2574 4316.4909 7991.788 2214.1649 2214.1649 3616.3941 11361.5471 5422.7477 5107.9096 4616.628 5663.5519 4322.2539 5398.0878 12802.966 3942.3297 8527.3158 5953.0884 15758.5754 3047.4386 9053.9241 17926.7154 4238.3116 19498.36 6624916 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 21366.9353 209996.4435 13907.842 42835.1837 22320.5547 4697.371 11573.8255 11677.4742 14303.2506 261934.0756 11000.7011 13359.2164 11131.2603 11754.614 11754.614 6706.1979 21290.0291 13336.7422 10148.6518 15361.0741 6498.2864 8350.3505 22380.1173 20416.5119 5169.7113 39203.7693 17514.0683 20358.2359 9450.4579 16059.9047 14989.3563 6802.2662 180196.4806 84510815 TIM Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 26203.3148 26222.9784 28190.3701 277561.8842 51409.715 5521.6622 13775.1702 54620.3888 13656.6014 24506.3471 20635.9802 177435.1628 12246.4798 27827.7206 32185.109 26747.1424 26747.1424 11161.0647 51133.749 28328.1996 22701.3515 23427.5197 10967.6983 13402.8605 17969.1924 13114.9956 48014.0688 23231.4201 16598.0936 17322.6271 5821.6569 11813.1668 16691.207 15423.0268 7367.6507 315250633 pme Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 7677.6359 31946.1022 14528.1973 20803.8587 41015.8252 6841.2927 3022.4406 3572.3386 3761.9841 5134.5953 4357.1323 4011.5109 8656.6952 8656.6952 3862.719 8659.8497 4935.4682 12086.5209 2257.3346 3385.0661 7365.9322 4411.5133 8920.2999 7263.0861 5902.8971 4169.4489 4792.5609 5778.4525 6874.0756 18239.5057 359792313 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 13555.1574 196466.086 8822.2113 10113.1259 9180.424 3418.5523 5229.6517 38804.7908 18853.2312 68641.4849 13823.6654 17847.8204 48451.6547 11514.7282 11514.7282 14311.8054 10884.58 9861.4005 15400.9025 23642.5733 31581.2371 21491.8811 8373.4066 8734.2505 12128.2296 45680.0825 13118.0304 24576.2004 6842.1548 10779.343 8959.9309 7110.754 70609.163 334897845 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 16994.3638 12640.4964 11043.3487 15998.7594 9523.6977 55756.5971 12905.3114 7931.5588 12523.8683 24134.9519 12627.1695 308287.3161 22585.5672 15102.2963 20204.2007 38542.8986 38542.8986 10424.4386 28375.997 20264.9372 21784.6689 32230.0111 34852.9295 11859.6783 10254.5222 22572.4648 12667.7475 66876.448 17926.2782 26270.8528 11301.7784 14290.0352 15266.3591 12097.8585 96701.9519 71395626 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 36115.206 10184.275 9667.8561 16986.3063 10623.4337 5310.8096 8390.9802 15377.452 6618.3041 8748.6903 20927.1557 14158.956 12661.7784 7933.5892 7933.5892 13110.9312 33203.0975 16054.811 19468.44 31986.8647 20768.4793 13424.807 9120.4524 17917.9873 14150.6024 32793.754 12356.5854 19852.6425 9031.4817 15077.6774 12833.5405 11548.239 19610.2055 375752146 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 6289.9001 22060.2766 3041.4886 3395.555 5603.5341 6491.6402 3958.1499 661823.6847 9637.5856 5642.881 8459.7539 2917.9537 2917.9537 4227.5957 14623.6714 6247.4239 5795.5415 7265.1852 7180.3972 2960.9521 4851.7414 13589.034 5295.5875 15039.3496 10779.123 10497.2322 3030.953 4974.2443 6112.1694 3591.7727 6253.0286 300715557 phytase Phosphorus Phytic acid hydrolysis NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 12579.2309 59680.503 6638.6769 12039.2632 7574.9888 8726.1608 7303.1318 6632.6125 26057.387 9224.4855 916266.2641 5200.6895 10112.3243 79945.2833 9873.3038 9873.3038 4653.9573 25209.8722 13374.5891 10306.1041 35584.6029 11335.0083 7415.2288 8891.2722 9680.735 4188.016 31140.038 12885.8174 17522.9601 6092.7321 10443.1674 11975.7498 32788.8489 25530.4404 221632899 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 6445.503 2689.0307 5763.1154 5235.9017 4481.462 472728.267 5168.2225 5778.537 5662.7688 9962.239 6038.4703 8139.7972 25082.246 4901.1176 4263.9573 25672.7405 9527.7333 3149.376 14389.9143 8805.2236 16081.5858 3319.5582 4977.8941 4901.9079 2899.139 5857.5209 209401960 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 52234.599 13331.0634 35832.6726 8645.085 38922.1538 6197.9203 33979.1466 57806.577 44139.7282 29044.1273 84919.2055 40568.5182 296842.7988 157043.543 35675.5918 31131.0789 29690.5461 29690.5461 20409.9217 100751.4332 61866.9667 67370.6825 40819.5791 36727.6901 67589.8785 30290.0175 44647.8791 32478.6486 218634.4888 97713.8229 90964.4 32211.3159 31790.5194 73218.3253 18570.6432 65446.533 198404187 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. MS superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 5900.2091 11840.6731 4490.9931 2356.25 3611.6431 10477.4784 3553.0525 62523.3253 4153.0587 2205.6023 2205.6023 6704.7794 4574.6491 3712.7531 10879.6895 2716.7345 5773.4428 2512.666 9702.3687 4844.7379 7421.5524 2489.4175 3065.4586 4085.1786 2149.1379 17893.6024 340028807 rubisco Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 38239.6855 17168.3899 36596.6359 13433.8207 88255.7846 62930.7684 50676.7294 46856.3323 41285.8457 42502.0802 35857.8151 55990.6521 570765.0543 42195.5876 48668.7006 54920.8354 58074.0285 58074.0285 23699.0193 78011.885 35232.3014 38403.3459 65012.2515 72806.626 31550.2294 40631.3793 38263.3864 40830.4273 151107.5273 65577.2332 44352.8279 49049.446 49937.6147 41840.5073 46984.1019 485008.4181 306811171 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 16716.5993 21276.3703 13808.0207 11143.8318 19194.4481 11803.8449 37804.012 32671.9182 17534.903 15829.0106 258495.3736 8165.4688 11038.3077 49221.9962 20942.0793 20942.0793 28541.527 21892.4084 12350.9996 14752.6273 14460.2204 12159.7622 30853.0664 37271.0329 16324.6459 9462.5298 24778.1198 12600.0652 14159.2134 7703.9232 11764.1622 13626.4451 5345.7417 31320.5522 374292557 ppx Phosphorus Polyphosphate degradation NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 14802.42375 44394.0148 10103.1123 9164.2259 7166.556 14733.6156 10716.5454 8018.955 407061.69225 16295.8775 9631.5528 9631.5528 6439.3461 11601.13095 17027.8573 8390.2085 7825.24375 13375.86675 8816.3078 14693.7899 8628.00065 11682.7372 4404.26515 5902.56645 7554.66035 6547.37205 21875.813 227163910 ppk Phosphorus Polyphosphate synthesis NA Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 22782.2114 14379.2119 67606.8592 7873.0272 7148.3455 7772.0082 4900.9015 8823.7201 19098.7033 14155.0796 256766.2967 17246.7527 15771.2427 17874.1516 8912.559 8912.559 8624.4477 16478.6725 10617.551 16529.4277 8684.7321 10131.2268 7181.1414 11768.5236 15275.6692 13599.7342 38008.4441 14924.7127 18896.055 4865.882 9548.4945 8651.8383 6152.1515 8909.6394 223585870 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21324.4551 5863.2006 23641.0778 6437.69 6409.8624 8221.6004 11401.6823 10904.699 17298.6843 232889.3941 12557.955 11793.3482 29214.5318 11600.4704 11600.4704 4465.6466 20665.6615 11045.7878 11673.3254 19094.8691 5553.9005 6371.3276 13923.8522 25773.3392 20577.4961 127600.4881 24448.2822 20574.1216 4654.3069 21892.104 13673.6257 4362.2935 7436.0513 162415385 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26078.7195 24609.2009 8512.0553 23568.6545 45154.5223 14600.2137 9621.6515 31645.304 66548.5634 32428.7467 343304.5582 72143.0986 24829.088 55918.4768 43432.8772 43432.8772 17750.0293 54192.8901 12813.15 184123.793 38243.3855 10291.171 30127.8355 33686.0278 20530.7984 33397.758 50544.6356 32830.4036 29558.1515 25891.6047 23640.1915 32005.7369 19129.5715 39204.0303 254429261 dehh109 Organic Remediation Chlorinated solvents NA Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 14441.3813 10142.4021 11713.9214 2175.7766 5193.8341 3963.0224 4743.7054 22035.2512 81404.5483 7098.3445 5429.8808 8927.246 8927.246 7301.0945 8208.3334 4026.4198 5438.0021 2538.5716 13873.0967 4264.5651 13350.4648 3610.4425 3838.2567 17243.9557 2637.7353 97601.7993 398087861 ben_bcla virulence NA NA Variovorax sp. CF313 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 52669.6956 12903.1984 18073.2229 21690.5598 18921.6603 21623.8646 9091.4141 33508.1512 39890.6739 26624.5193 278685.235 19944.6657 15252.6381 33702.0064 14652.7461 14652.7461 14531.5241 20130.4311 16573.2676 12776.2799 14533.0393 21093.9875 12558.8485 10347.7249 20902.3666 17752.0475 31962.1509 17280.9357 25340.0304 10410.2446 17390.5175 31803.7645 10258.1952 28811.9398 373233016 RgaE Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 18052.9204 8553.3576 24214.9865 2373.7055 4436.6805 6193.4372 6558.4141 4868.4235 248900.3351 10606.9364 5556.2489 5698.3521 5698.3521 3998.4925 11796.7535 12442.6636 11472.6502 10595.5846 5445.5683 4991.0428 4063.5056 10795.4833 5441.3752 19841.3971 8500.8366 10917.8794 4150.8228 7097.757 6291.6058 4059.8103 9418.9447 78061123 terc Metal Homeostasis Tellurium Detoxification Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 83022.6713 7839.2049 3814.7395 16523.5767 8215.6171 22181.1752 13937.3772 157715.0665 9311.4066 7701.7184 4927.0314 6714.0099 6714.0099 7284.5103 25914.5691 10695.364 34764.6216 15298.1407 15609.0279 13511.0103 7448.6584 14970.7378 5873.2063 46525.6748 9453.8825 16941.3249 42294.5088 10815.0332 13225.0962 10648.7846 14627.8867 223586016 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6505.0099 4736.087 4462.7474 3525.2419 7953.3279 3130.3982 77785.6496 82216.6617 8345.6359 7442.7014 23147.89 23147.89 3712.8057 8846.9067 6309.563 361276.4432 62631.1749 5777.9588 3846.7185 9407.0754 11772.6152 20718.8714 12656.0729 9692.134 2006.1007 27030.8665 8382.0186 5299.2832 39984.3641 115395842 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5221.536 12838.3663 7542.306 8418.3062 2382.87895 6566.7322 7794.4238 3730.8434 142470.2932 10603.3138 5947.7716 2938.3591 2938.3591 5150.0357 11277.1175 9350.102 9760.0873 7653.5618 11275.0968 3813.5931 5446.8042 12510.5761 4044.2619 17884.5564 7269.6929 14153.165 5013.1905 8269.3312 4978.24825 4142.287 9607.7652 302410213 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5128.3285 2134.0528 2134.0528 2868.5878 5920.5683 7580.3347 3036.0449 91977592 b_lactamase Virulence Antibiotic resistance Degradation Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 17660.294 11815.2727 4322.494 5771.7442 9005.7839 4025.977 10180.7022 18966.0312 30199.5313 221717.345 21788.5657 16962.4416 5798.773 9935.5373 9935.5373 9343.9293 27821.2621 26808.5577 738394.6996 10758.289 69966.194 5482.7758 9865.4784 19595.4375 6285.2628 29657.3803 20421.759 23452.8767 7236.4913 11183.444 9422.5463 7812.7679 31321.2143 83950885 alkb Organic Remediation Other Hydrocarbons NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 889339.4281 5877.6517 67592.9168 15123.3771 8665.9149 7607.0562 4618.8705 6593.9676 11729.7094 10288.7356 24316.4009 157892.5481 32661.9882 10982.1811 13011.9571 22495.4875 22495.4875 7300.4367 11264.4185 10024.1983 10143.8412 76836.0382 14419.1444 6049.5773 4805.8009 15309.4467 8642.6001 39118.1949 13767.2273 15135.6722 5191.5849 6910.0093 6672.3818 4769.9086 11506.1016 23450983 ben_bcla virulence NA NA Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 281579.0093 42458.9746 3867.9976 42841.9886 4579.4173 2438.3392 3631.5419 9089.3224 6131.107 56139.5016 6716.5335 9857.0812 5634.1844 5634.1844 4403.6737 10449.9299 5572.1512 11762.9457 9575.0862 9545.3926 6370.1529 6424.1063 8079.3275 24549.609 49667.1232 12474.2799 11988.6604 5469.13 8819.7214 14711.4629 4185.2295 6074.5262 333940644 bphc Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 22049.1242 11319.568 13757.8465 21474.6306 222683.5938 14176.1388 19682.6015 15687.8218 11274.8237 22029.3709 113384.2602 15148.7877 401609.1472 40296.0624 70966.9537 38242.9437 20979.5275 20979.5275 13820.4959 29389.125 21252.8395 52601.7385 47827.5281 96139.107 16622.9388 13076.2917 33330.5282 12030.6043 51797.6824 25231.913 30989.4314 12450.719 14736.7681 15496.4294 6247.4637 19386.3899 225194052 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19052.7125 13198.112 8700.0406 27396.0071 4606.3696 8169.2379 9435.4396 13358.745 15359.7241 24971.5285 8931.9214 306866.2839 10039.2365 41951.9522 37486.095 18373.9873 18373.9873 16890.3462 38649.2778 80202.6939 388444.4984 29721.035 25419.8556 8901.8281 20267.6499 25546.2688 23355.0238 38401.2352 21762.2832 26253.4744 12685.8099 23950.5728 38309.0074 25379.3084 164505.1873 99035804 phn Organic Remediation Herbicides related compound NA Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 28744.2272 2950.1575 3475.1444 7046.707 2367.7038 2367.7038 10890.3927 5069.4442 2630.963 2284.1383 2846.0335 3406.0876 4130.5668 239630501 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus paracasei subsp. paracasei 8700:2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 22386.7856 22675.9425 27551.4321 34440.5612 18579.0956 13888.1467 11045.8626 24106.4343 21775.8686 9234.3729 281424.2389 20428.5379 25480.4715 16319.1595 7447.7321 7447.7321 14026.1266 25634.6008 19760.9526 17991.2563 25182.4004 23658.4019 11735.3701 11404.8454 22274.9511 12453.8333 42735.9449 18653.7803 35747.2009 14292.6081 17310.2591 18044.8662 16866.245 24463.9617 139003422 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 42434.3002 81362.1792 40187.4576 21445.7905 17002.7866 12037.1741 25289.6233 12801.3979 29684.2994 36757.1261 30395.0762 21157.2413 790224.2151 165974.84 29729.3663 68625.5631 14074.9636 14074.9636 20212.4218 39815.1175 20004.3196 34290.5598 28697.1541 17064.5223 16177.0389 13501.0581 26084.6036 10239.073 69703.4799 68409.1868 48860.2795 21935.9179 21696.9971 22314.0061 15934.9493 43188.4126 342316550 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 8931.3867 32733.7857 6454.9913 18772.1749 13596.8118 3303.201 6888.8647 2808.8409 12526.0094 13354.9549 16722.6813 170980.3937 16546.3821 60025.737 20011.6411 11433.7408 11433.7408 4447.2883 36243.3449 8794.0824 15267.368 11110.9705 21669.3725 9090.1389 13956.1527 10552.384 8401.6965 50834.3138 16127.4389 19688.504 5859.3545 20155.3628 10811.7157 6327.1588 9118.1164 307154095 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 23915.6345 105020.6056 29148.8532 561867.8296 38987.3469 12399.0649 114111.8852 22571.6393 13955.409 71950.2872 36965.0259 26140.9788 700143.6232 113428.6505 115185.1989 52886.6844 72986.4645 72986.4645 20084.8793 53244.5974 40299.176 28787.0232 39796.9204 46247.1067 48903.6799 32252.4693 247785.8342 23034.0813 153079.4825 50705.9037 68820.8247 25356.5496 45911.7474 49083.7422 25720.5388 142092.7847 111024829 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 23564.2004 138405.4901 12515.5487 15361.0498 19490.009 45090.5187 11232.6767 13257.6178 17971.7284 9724.1851 364584.723 15989.3709 36289.9678 71779.1607 76866.3119 76866.3119 34030.1014 25098.2276 16707.8839 23208.3118 20329.7556 18676.2912 9626.0374 9544.7865 20842.2188 49064.1399 42786.3057 71028.2877 21943.9731 9132.7695 12641.0332 41142.0387 6908.0764 24938.1389 343390225 amyA Carbon Cycling Carbon degradation Starch Streptococcus infantis SK970 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantis; 5677.1663 6926.0755 12993.5353 5058.8297 4200.6568 3117.8591 3126.7659 11251.941 4626.7053 83175.2869 4394.5159 4161.4956 5343.4321 111456.3638 111456.3638 7896.4377 4749.7065 10550.3234 8886.1261 2835.3568 2794.9338 5866.0521 7056.1011 6662.6158 1928.2934 6205.5982 3703.6419 3738.8898 7550.353 229469033 cellobiase Carbon Cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 7511.8726 2497.79 5348.0473 5207.7525 3059.5998 122958.6533 7205.1408 3759.8925 3759.8925 12372.6184 4551.6997 4717.9658 7182.8133 3061.1178 6397.6296 8640.7952 6981.0765 11999.9385 7107.343 5333.6956 4208.8972 4642.5004 5151.1308 6375.9436 332717200 cmci Organic Remediation Aromatics Other aromatics Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 182837.4582 11648.1994 55252.1577 105149.5694 5273.3494 229448281 pula Carbon Cycling Carbon degradation Starch Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 14536.057 7221.2915 11160.2604 9062.1323 31408.502 6326.0824 5059.1913 32502.7882 20494.5054 8434.5098 170974.1811 12457.1136 10586.7746 5157.2101 3900.8935 3900.8935 30681.6659 14273.9445 13759.3134 17908.2838 15459.9738 26167.064 7645.8009 5470.3658 19893.2613 5596.7853 24604.3252 11110.9623 15128.9557 18277.2136 7149.5958 9390.2171 29427.9028 35153.4426 340535793 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 4624.6421 10442.2795 2142.5434 7643.5232 6414.2994 34102.2656 165672.1612 29896.6142 17636.0589 8074.8013 3900.4766 3900.4766 6013.3707 3856.0673 10169.3677 14840.5078 2222.8213 9421.0285 19332.6502 2021.6405 14073.7386 9181.704 16211.5894 2008.1921 11009.5717 9689.0982 12409.9446 45421890 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4422.8861 7732.3565 14947.7156 15351.2103 2731.7257 5027.6651 2992.8905 3644.3866 93201.7387 4229.473 4477.6996 4903.5063 3482.4971 3482.4971 7996.3809 6709.7024 4040.6857 7581.8462 22291.6852 2197.5144 11626.643 12152.5148 2992.6297 8729.6364 5647.4515 7221.4046 3638.7186 3227.664 3279.7675 2663.4113 297529832 RgaE Carbon Cycling Carbon degradation Pectin Geobacillus sp. C56-T3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 15127.9274 10078.9096 9349.3802 21971.679 21227.1526 10398.3561 10455.226 10482.9405 11778.1019 16503.8159 7938.0036 277182.0979 23588.1478 15347.8855 16168.7963 8030.3808 8030.3808 23836.9673 24426.074 15207.5811 12966.0682 17877.7072 16823.9972 7449.436 9728.6628 20970.4071 8794.2966 32244.0179 7399.7301 18467.8266 7869.1315 18885.0379 17833.0677 10034.8562 26626.8203 91977440 chnd Organic Remediation Other Hydrocarbons NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 27678.0824 10434.9112 11235.7309 6635.8996 7723.2379 7723.2379 2881.2631 9401.855 4592.6066 69586.3819 12011.0325 4790.0132 11343.7365 4794.2456 3740.3868 3195.2068 295439518 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19300.2024 27411.5123 15954.6217 43275.0605 13870.7072 20679.1804 11172.1234 36323.1175 216573.842 28156.1958 48122.7815 72084.5621 1209980.0311 77730.0936 104518.9262 104728.5526 26795.2525 26795.2525 19350.9476 45771.1587 34594.7088 35407.132 152467.2664 42797.3103 51498.2216 42498.2686 138884.8376 45582.922 150261.7001 55723.2872 37870.7717 53872.6045 76726.422 36046.389 78489.7025 97333.31 260651277 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 27229.373 48361.6478 15335.0992 27945.8493 42768.0557 20141.3833 14826.0756 100718.6565 45919.6304 25984.5874 32610.1081 25091.4289 3588101.5442 24486.7639 32389.6152 36877.7416 48062.4642 48062.4642 25855.1795 50471.8606 28572.1273 29569.711 42677.9896 39632.4175 21208.7944 16382.5522 45482.1268 46000.9296 98692.8913 60955.1848 36674.7256 20958.7725 28121.431 28708.134 97047.9242 29152.5308 121663856 pcpe Organic Remediation Herbicides related compound NA Rhizobium sp. MTP-10005 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 11050.6309 6809.8118 6198.332 5531.623 17985.8335 8467.233 26278.7815 11742.0359 189760.2374 8457.3667 9435.2212 6486.1582 47495.5785 47495.5785 9518.8401 23987.7987 16018.0462 58547.8181 61622.8539 10405.7149 20220.8963 6946.872 14772.8491 9645.853 25906.9891 7168.0407 14031.4844 4569.0041 13127.0861 17342.968 5989.7144 12016.2954 357406770 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylomicrobium alcaliphilum 20Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium alcaliphilum; 20300.8788 176155.3667 51188.4728 5040.8382 12920.8595 9062.1699 13301.6918 12520.776 17663.2155 282297.095 5168.5154 8705.5073 163773.898 15294.8422 15294.8422 5753.1601 29531.4164 8499.3916 17983.6305 22250.8903 5281.6954 7062.177 11770.2509 31707.5086 13927.3633 34144.6598 11742.1189 26693.3565 7236.6447 20542.1903 14936.9842 8717.4887 6564.0486 379990369 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6655.1302 4101.5018 4463.7801 77726.4668 4598.2597 5481.375 5551.7988 2729.6796 3198.8982 7339.1889 3291.5614 12506.0923 5868.5613 6748.5845 2454.3416 3125.0486 6434.6897 3256.2198 5713.1548 160896802 vana Carbon Cycling Carbon degradation Vanillin/Lignin Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 19622.9022 39121.4237 13941.4237 81335.8683 50754.0656 15893.6026 13022.0013 12102.2292 13896.5497 24351.2189 27473.0555 311664.4565 17310.2795 20696.5294 34651.9998 19299.9917 19299.9917 24818.459 23403.4468 17926.8879 9045.0923 17768.5488 9869.6313 4631.6612 19574.5695 30129.3908 18038.9084 33718.6662 26247.9174 41540.6168 7796.7222 14252.0755 14305.069 11209.5157 13540.4546 91691844 bend Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 23221.2094 5272.1178 15725.4658 13752.7106 63906.9914 35226.0648 2865.9949 122744.5899 222106906 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 17404.6266 43261.2008 9298.0131 35783.1091 25180.1602 53638.3737 9257.4002 12100.4637 10171.8694 13709.1599 227142.5266 215313.6543 17968.9115 12590.0107 9016.3111 3658.2386 3658.2386 10744.1943 22608.2453 14182.0681 13689.0411 16365.8253 22845.3963 6897.6758 6776.941 18016.1166 9593.8292 31483.8575 16722.2668 13839.0246 7798.2608 9414.7696 10293.5574 9138.2738 16105.889 51872775 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 16939.8371 8493.5103 2092.4451 5832.6462 2852.2031 4816.4774 4040.3724 3764.3714 3764.3714 6109.7309 9096.6012 7819.8575 6237.8643 4291.9146 2965.9096 3767.6513 2499.6622 5133.9631 4104.8969 3017.8938 31425.2326 5022.7523 377539906 terc Metal Homeostasis Tellurium Detoxification Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 9481.162 6902.8292 15944.5723 10419.5026 10959.0715 9816.1556 8577.8209 14100.0317 8449.4326 4499.6502 222429.6955 14659.0329 11246.7025 7382.92 4111.6604 4111.6604 8102.8857 13260.5115 10137.8554 13663.3831 9433.5788 9218.9195 6052.1984 9288.4656 15462.5595 5352.7629 23124.7481 10716.0669 24678.9331 6507.3521 12589.6779 7671.3728 6166.9212 15987.2208 302439111 alkb Organic Remediation Other Hydrocarbons NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 33514.6658 25265.2004 26009.5353 25114.8323 8068.64 22921.2288 21447.6321 19113.7684 23166.5558 22017.8453 12607.4843 788774.6922 23794.7645 25513.8426 16019.4183 14322.4705 14322.4705 17094.5762 34097.5636 25579.6026 36347.1697 25788.2734 42892.8401 15343.5625 11707.5812 24256.5312 14582.7246 46715.125 32488.0472 28271.2148 14163.1472 15356.4184 28229.3372 15604.7598 42731.081 238763591 ppk Phosphorus Polyphosphate synthesis NA Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 6051.3572 3788.8137 4399.402 3356.7786 7416.4961 4864.5476 114895.4299 4628.2605 5332.9904 3521.3152 3521.3152 3971.7561 10368.2737 5614.1194 7716.429 8114.9436 7491.1886 2734.4416 3167.723 7434.1027 2870.732 10201.9251 4034.7642 7246.437 2240.3118 3847.4642 4694.6529 2768.9806 8441.3035 281192661 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 57546.2209 9318.3481 11033.5578 14246.1889 13695.4729 583237.5858 22656.6213 10065.4495 9227.3799 9398.7998 12333.2441 197507.7691 27400.9815 13533.7818 12270.5867 8590.5765 8590.5765 36188.8149 35124.2193 11533.1826 254305.5676 63278.9954 473248.531 28957.5337 8238.0331 29251.5929 8519.9611 47262.2623 12175.429 23103.0575 43649.256 15760.2588 12676.26 25627.5421 98201.4857 83941267 dehh109 Organic Remediation Chlorinated solvents NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 10105.395 3135.9967 2713.5658 6019.5963 6017.554 4905.5864 18380.1799 59196.9385 4369.0345 14574.6509 44931.9499 23697.2977 23697.2977 16177.8411 88187.3047 5604.404 4717.2562 2542.13 6602.4984 12942.7159 3882.4047 13372.5571 4953.6996 9968.4099 6511.255 8020.2242 6244.6077 2885.6888 10106.5505 262083034 ben_bcla virulence NA NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 16313.7524 5809.45 8621.9325 13234.1998 4818.7632 11875.9965 5382.0763 7398.6071 16990.1282 8924.1999 152216.5794 27142.5159 8775.7943 8507.4581 9849.8879 9849.8879 22127.2816 13931.1822 10432.8752 9820.584 11485.9526 13841.3907 43790.6477 8986.2462 20002.2898 11297.0787 35919.3284 11705.5932 17936.8529 10692.7428 9871.1774 13592.9191 14487.716 14846.1024 89347607 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5506.7983 6303.5188 7868.0232 3205.0594 27870.9334 8390.177 5271.6907 5133.9917 18590.7014 2807.4377 2807.4377 12766.3833 9384.4769 14878.3695 4603.1538 5097.8995 5711.3615 2478.18 4481.4174 11875.0921 2545.8076 17563.6382 10006.2923 8655.6923 2228.5155 11500.5331 5414.597 7806.9603 29830060 hbh Organic Remediation Aromatics BTEX and related aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 8560.916 18972.3855 4688.9312 4290.5878 14561.9595 9578.4666 4939.4704 6926.3972 16490.8446 93358.5959 6473.612 8137.14 5619.0137 10265.176 10265.176 4592.5751 13072.0018 5430.4553 22256.1705 14535.035 29445.8991 27514.0313 6852.3326 12994.2987 4762.4084 14971.4262 19817.3685 10958.5159 8250.4484 6902.9519 10653.6411 11143.1102 32204.3497 375264049 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 5749.4491 288545029 amyA Carbon Cycling Carbon degradation Starch Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 11634.6475 9814.5931 10337.3832 3868.8451 4692.9725 4394.1575 9327.6808 16811.6902 5367.2988 153091.5986 10947.5017 9977.025 6116.6274 4634.8431 4634.8431 10080.1499 15170.7646 11432.2805 8979.1861 11228.8478 8380.3 3984.9944 4978.4671 12210.7952 5270.7698 19838.5743 10802.5547 13888.0507 3325.5185 6824.2598 9907.853 6398.5194 13276.768 297203252 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 22394.4572 14304.1663 18665.3278 34045.8084 11546.7417 15547.2398 15982.3983 11586.6485 25470.5216 19798.195 11602.8329 446492.6028 21072.2774 28367.0557 20182.8348 10063.8193 10063.8193 18541.7704 30670.5956 27156.3405 25040.5025 39500.594 30510.6978 13247.7937 12364.9573 28641.1695 12709.0152 49537.0144 29609.9589 27787.8968 10114.3667 14813.5682 16796.6335 14101.5131 31152.8533 27922984 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 80577.9318 190081.6252 136851.803 87960.6783 110236.0368 29359.7762 135529.5702 44430.9824 75847.9259 46676.9069 75558.5839 5244609.4603 39001.6728 115826.344 168153.6736 107178.0047 107178.0047 37034.5726 131323.6189 41437.3513 70327.27 95635.5507 31486.6132 31627.7695 70222.6245 268354.4523 259713.5441 163940.6813 130369.9832 86575.0481 211873.4348 85326.8681 70682.029 55364.9411 202240.1429 387850034 amyA Carbon Cycling Carbon degradation Starch Cronobacter sakazakii ES15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 23978.182 414844.431 3666.8802 3073.9924 4445.7637 13183.3796 68033.4879 3095.9607 3095.9607 9980.4505 2140.9133 5294.9516 11881.4163 7695.3416 4625.9635 4959.5437 3894.5827 6752.2233 30180438 mer Metal Homeostasis Mercury Detoxification Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 76529.1872 247659.8252 28118.4115 34750.8391 52277.29 24272.2651 31790.2989 292605.8424 19918.6708 195317.0316 88375.4057 140946.9663 1347732.1845 55914.5724 63685.6859 866711.9537 122904.6878 122904.6878 30272.0071 114868.2969 41211.3771 42633.7265 77149.8887 102921.4333 42960.728 45462.7668 56817.1899 58985.3343 113336.1557 84427.4938 112396.2851 68517.4742 83040.9753 162666.0652 55089.4624 134113.1841 78057476 amoa Nitrogen Nitrification NA uncultured Nitrosospira sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 113833.9126 4386.0103 28832.1679 6326.2454 8868.9056 6619.9226 5294.7117 3952.6384 14478.5581 3522.7107 195324.2508 10544.5015 10060.5085 6461.1195 6651.3625 6651.3625 9282.8971 23726.5832 13806.5359 25615.8635 10619.838 12957.3253 4472.5215 7327.3924 25011.8465 5479.642 21587.2678 20759.7806 20415.1678 6016.9765 5413.1667 9239.525 4860.934 9746.8929 146283407 trzn Organic Remediation Herbicides related compound NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7198.1666 18107.8539 14059.6507 5871.9427 13421.9683 3650.9656 2199.67 5092.539 8609.7476 7248.1453 82025.0308 17789.5366 15865.0913 8698.0011 8269.8173 8269.8173 5059.6685 14365.085 12589.038 8121.1937 10713.5426 10182.9348 6219.3664 7572.4172 10233.3204 4055.3104 19618.4156 14135.8859 16600.9401 4985.1377 7807.706 6959.6896 9932.9795 9964.3991 89345021 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5135.7752 5072.7331 3260.4449 8758.0149 11433.1336 2386.4452 168927.5266 5727.9755 3444.4747 4654.1594 8980.2754 8980.2754 6322.5596 4059.6081 3622.3895 15260.6611 3281.1358 2999.8638 6199.0191 3000.051 5064.3805 5580.328 4465.866 5300.2825 11656.2226 5520.0597 291454792 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 187852.3883 359409584 mer Metal Homeostasis Mercury Detoxification SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 11024.5808 207994.5877 68253.4893 3980.1657 5205.471 3928.4919 5779.6169 20322.1592 7733.9009 157492.1477 5995.8859 6630.9547 11748.0519 2155.2992 2155.2992 5208.8439 10189.8845 8957.7598 10143.7141 8570.2066 11151.5885 3345.7954 4144.5478 8700.4363 4218.3422 13913.8392 7078.6844 10028.3496 3883.403 10492.6863 7431.7457 4089.7571 13192.8711 357969794 arsc Metal Homeostasis Arsenic Detoxification Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 47555.9207 53733.6587 43848.0737 10903.8465 7954.3409 17114.504 22206.0593 17603.2464 33194.2026 55587.7339 48278.8479 475658.449 30621.9384 172661.3449 63086.0259 49793.531 49793.531 17571.0378 63073.7514 63943.558 130223.2529 46621.6234 23718.658 20503.3455 31379.7689 54123.3058 41854.1324 138043.7897 23966.6735 53064.4511 20327.106 71562.3795 76993.5298 25641.9394 46782.1156 149828 cellobiase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora; 6442.8187 13211.2814 12165.3471 13120.0748 13117.4556 4786.5758 5643.2608 17634.1691 8148.8637 186402.9968 7694.3727 18482.9351 42761.108 7594.2236 7594.2236 7550.5469 28396.5231 9672.6583 6323.5744 13229.2564 8316.6854 5398.7225 5703.6295 12107.0566 134730.3202 39384.8702 12775.7136 28347.0809 8970.7121 15523.2587 15165.709 8235.034 11746.8742 358639813 tktA Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 86628.3869 13774.9259 324950.0106 42659.724 24368.2125 15123.6182 41190.3664 15872.6824 19355.1927 39420.7623 94720.4825 849222.4745 41016.2875 29381.8638 205382.006 52999.5846 52999.5846 21434.9354 40207.8486 42977.5242 37821.3846 136103.4595 91541.951 54808.932 29107.3698 30045.3164 30468.0399 70047.5465 57045.0382 55090.0236 16054.6655 58694.2103 51049.4514 37958.7749 46456.7884 27354399 SoxC Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 104631.6592 19697.3777 26032.9576 66772.701 51587.966 11546.177 42130.5267 36015.9905 33481.9021 39623.8122 123705.6628 81494.1785 1024513.9833 53958.5886 46507.1006 41671.9683 35404.9856 35404.9856 48356.2131 68780.309 43294.3076 48931.8943 162977.4958 327727.9072 37471.3559 67419.7524 64742.858 53451.5002 127892.5238 49801.7031 54630.6214 30750.4046 44534.3087 65112.8289 222384.9684 62328.5205 75992419 phtb Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 103283.286 21598.9545 32137.1714 12537.0317 5382.945 31472.9782 9877.4749 38074.4735 20723.5714 44364.7268 37581.9933 638680.6136 42228.4414 42444.5329 35339.9104 46497.3176 46497.3176 17642.2486 88106.838 20456.0543 522069.3638 104279.8108 11665.4022 23367.7534 28664.2324 23907.9068 23891.0564 76099.3786 43835.2059 69770.1448 29668.4123 17037.133 79632.213 11424.4521 74836.8787 6911973 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 23000.4282 13060.5943 11946.5985 8312.3439 11649.9535 14765.0137 9121.6997 9265.7474 40558.7381 16502.2674 302054.0178 16946.5419 23895.8356 21860.6453 18118.0237 18118.0237 10711.5312 32668.429 18188.2209 17124.4422 44381.6589 26449.3653 15401.1781 13881.774 27553.6908 11933.5032 30311.6457 23460.7775 28339.8163 13249.055 10352.2891 28579.9105 26920.4977 10852.6788 359424109 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 57782.3153 24686.2968 485866.3534 350320.2087 57339.1696 7033.4721 22980.2975 80004.6179 20024.1125 13895.8234 45707.5109 27916.2208 262162.8179 43268.7939 36069.1094 34158.8202 29529.3088 29529.3088 17780.7103 48724.5177 22275.4508 92635.7309 368038.411 23751.8465 34154.8762 20979.222 31812.5589 59000.2353 80405.7676 26864.4712 44204.6727 14273.0567 35693.4596 47771.357 21097.3584 37044.4304 210160317 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 4059.0757 7083.451 10605.9069 43514.8004 11940.6535 5683.7993 12650.294 6913.5267 8462.8337 5825.7808 178324.5426 16523.3154 16653.605 28186.4811 16776.9662 16776.9662 9252.0467 30813.9958 13060.2653 4352.2605 45344.5096 16305.5886 3246.0464 9799.7138 21164.2429 5962.2528 22185.0114 13530.2971 20480.9716 4073.6637 11636.3537 43677.5612 2845.7093 19949.9896 208936519 dsra Sulfur sulfite reduction NA uncultured prokaryote 9620.1275 5570.6459 39317.8716 14304.6332 9010.0047 6647.9128 10607.2178 5939.7466 13164.81 14722.1715 256761.499 14608.411 8419.5274 13715.3317 7629.6344 7629.6344 4688.8334 12646.9166 8002.899 10964.4445 8470.2413 9407.1206 4823.7758 39554.1237 32877.632 10331.1436 20715.1586 14484.7855 18717.1179 11512.898 9053.2616 8423.0621 9343.4393 7600.1804 389861998 linb Organic Remediation Pesticides related compound NA Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 18450.4629 6938.8398 39445.4668 13885.5384 9518.8565 5627.3273 10320.2226 14472.9257 13462.6612 176460.5252 14428.008 9668.1866 12349.3261 5961.1932 5961.1932 4149.4501 20810.3362 9783.6098 10558.5624 15668.1387 14156.7493 8522.2204 11601.7792 14314.0337 25586.2923 48288.4403 11157.6661 13318.2747 3649.4473 56763.5546 18486.8875 18719.4252 11930.8836 34392408 tehb Metal Homeostasis Tellurium Detoxification Frateuria sp. ANA-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 161485.4598 3339.4808 3822.558 55102.0881 5158.76 11172.0933 15478.1901 8159.8373 4708.9127 4956.8992 2839.2393 2525.32 2839.3007 26278890 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10490.284 12483.4916 12447.0567 10584.0863 10104.2843 3430.4936 6574.1726 7618.4594 6983.3482 83470.287 10249.414 10795.6543 5636.5315 5636.5315 7952.9208 21536.214 11938.9404 8146.8519 12109.5434 29490.153 5447.1113 5053.5067 13064.0642 6509.6554 18668.7219 12610.9466 18972.1944 6290.186 9062.0887 14847.5224 4891.0309 15228.7009 312197008 cysJ Sulfur Reduction NA Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 17793.7443 10158.6121 5703.074 29658.1363 19662.6368 5415.3827 6246.6309 13820.4807 79812.7953 76331.4871 7007.1302 5936.8538 4823.9159 2812.3492 2812.3492 3788.1504 19287.4601 13720.2722 51151.68 11701.348 9717.45 50265.4059 7195.7458 7688.9272 6486.3582 14042.7356 11383.839 27147.1794 11860.0207 8179.0245 14776.1367 7451.9409 7456.5788 148239655 Sir Sulfur sulfite reduction NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7494.0182 7057.6792 15381.8937 56563.9724 15878.1735 6833.3995 10739.7339 3012.451 7121.2931 7128.3224 5402.4591 206268.7833 10330.1594 18890.2548 18861.9495 12364.329 12364.329 7193.0845 10266.3808 7774.7054 14557.9655 8620.5441 8716.916 4482.206 6335.8506 30525.9504 5310.2164 17880.0557 14469.7206 21034.5463 6402.148 6885.7208 7414.6821 3890.7729 12395.8599 156234208 mcr Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 129387.0895 68568.6891 328523.5355 17641.3333 51155.6799 14450.6976 44888.9478 50535.3435 24724.229 51760.3597 143660.9134 63827.5489 2704710.8212 48981.1376 45886.9734 43957.9529 46992.9288 46992.9288 33278.0239 49850.1101 22020.7597 40453.3233 45603.1959 24913.8782 31555.97 35882.9034 45587.1839 56224.4671 314706.5772 68833.9437 66356.4513 16896.83 34789.5098 38749.4881 32013.5408 68673.2963 228015245 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4524.8114 4239.2568 2308.304 3685.4319 3868.6304 88323.5647 7718.8382 2937.2575 8043.3838 6555.0059 4833.0104 6284.412 5548.0632 2445.0885 7902.4339 5684.6943 3967.4215 3272.5724 139478521 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 70138.7761 524252.9285 33240.0599 5319.1067 11313.9926 6332.8518 167197.8722 13050.8958 16532.8706 13293.3354 14759.0573 15185.3701 277902.1175 17054.8396 53116.9776 20646.9062 26785.6316 26785.6316 37073.043 47196.7061 35793.7339 31017.2236 36021.4645 134634.9609 10368.7238 14150.7096 26911.4955 73606.3701 83450.6298 52941.2528 20102.7143 19322.3205 22001.6997 41090.9543 15831.9134 14724.5845 110824743 cpnc Organic Remediation Other Hydrocarbons NA Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 12601.8291 4784.1167 7049.6088 9365.5412 3728.4049 8152.1252 2879.3723 9415.9896 15204.4281 5293.9222 166692.7127 11854.7765 9153.1864 6635.3524 3512.7149 3512.7149 7000.9551 15896.7746 11825.6031 10815.0767 16298.8315 11646.1337 5413.9006 6198.8022 16964.8837 4520.3385 18408.2441 8965.156 14087.5156 6979.6833 7799.7034 9986.6469 5863.3745 15115.0981 146276395 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1085709.493 141864.9535 63498.9183 41450.8374 30636.1156 36817.3633 49481.1629 31914.1772 93385.7406 75999.8605 125750.3722 918710.7727 38824.5389 66501.7191 124149.6329 107099.5787 107099.5787 38347.9452 200068.6447 29932.2617 49006.7686 124002.3194 81436.0226 32515.1505 29318.681 44240.3317 34794.2027 117603.2456 34649.5285 116047.0504 106504.7698 55806.1881 33370.9973 49945.7063 40461.8847 330412812 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae oral taxon 107 str. F0167 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 5082.7364 9563.004 4364.3209 2032.5101 4004.7686 4527.8583 13925.8821 3462.8395 176701.5318 8109.839 4294.665 7079.4341 7079.4341 2944.0951 15803.8421 7035.3844 5117.2617 7923.4628 9179.8897 3409.5073 4342.7207 9153.8759 4331.3325 13731.4651 5531.7582 11838.9552 3556.8224 8432.7843 7022.238 3463.7782 6263.2019 301798068 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 56947.4125 14657.3357 32345.7653 67397.1271 28316.7968 37208.1879 127826.5982 46866.113 27230.7254 41165.0761 42004.7664 42219.7554 858259.3983 61727.7466 56689.367 58823.9211 42889.9203 42889.9203 25260.2591 61943.0153 33188.4362 32482.4983 50354.7543 65934.1462 22437.5695 30482.8871 49169.6326 37840.6291 95123.4488 31478.0581 44762.5359 26140.7343 33172.8739 43847.2094 40024.2136 67091.4437 359419583 amyA Carbon Cycling Carbon degradation Starch Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 136732.1763 126278.57 78683.042 47901.8101 23354.3785 13304.8451 71515.4754 14802.8171 43405.8976 45015.3028 37574.0987 595554.949 31681.927 96110.9187 38721.6834 93246.7673 93246.7673 24322.253 42270.5976 29781.9447 42737.9673 194354.7581 32449.5174 114274.5671 53810.5939 47187.1465 45452.9011 106963.9174 39162.2353 157896.6433 26408.2383 31374.1559 27180.6268 21414.9138 49257.3192 359289625 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 21254.9557 390653.4244 24443.9104 8337.9015 6677.1906 30067.4332 4755.3635 7543.6836 9289.3136 12241.4927 833509.5283 17376.4555 14851.2254 10293.266 8639.302 8639.302 7455.529 23530.4526 46128.4508 110309.0685 37440.2051 27370.6322 30106.1516 29232.1905 13145.884 17386.4636 64310.7167 16084.385 30195.4357 6543.5115 6353.5746 15023.1197 6380.2768 69155.5336 327312714 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 36361.8385 1138366.263 29217.0748 11651.2212 13873.7226 28145.0646 65790.6788 13257.8974 29643.0719 42643.4072 28855.5664 721275.1008 42265.3998 47009.881 292685.1052 32531.1002 32531.1002 47392.5815 57144.5349 22784.7011 23865.5438 40680.8717 30063.1183 49682.4659 15010.8486 28198.7768 50895.5254 96195.307 40364.526 48059.4511 17893.7493 80838.6153 33615.3545 28654.6379 65789.1191 159181587 tfda Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 85462.5476 45778.5342 26319.6198 51217.0815 72372.0361 16317.2537 29491.7965 23560.7677 9858.6875 17026.1632 21222.0699 10329.841 592575.7336 27793.3206 16384.8891 13053.0864 17913.0816 17913.0816 14971.6122 192753.6263 24524.1352 21312.0685 32251.0093 57222.5726 13144.9556 19957.8793 28961.3584 14877.7097 53251.6441 19642.2019 55905.4077 15565.0063 28246.3062 20030.9568 15431.3247 57543.4125 164508115 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6013.1264 9390.962 10048.9458 5500.5793 3944.5826 5054.2588 4590.9082 4203.358 2881.8383 222465.1637 4727.2885 23302.3094 4093.4756 2866.1736 2866.1736 4669.1562 5785.8025 4807.684 3769.429 7025.1298 5247.4956 2004.9576 3645.6787 10163.3306 2305.8253 9717.3236 5095.582 8785.3272 2198.1454 7486.5348 3855.4595 2935.8927 5773.56 83746982 mdld Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 12685.5967 64543.8644 45238.0962 23196.8426 120948.0044 10823.2614 21882.1014 9740.9143 18100.1141 10663.5218 94327.7113 11327.6275 291578.0995 21490.9423 15088.6626 27319.6536 15576.4472 15576.4472 6805.5318 20143.3278 21740.6112 8258.983 164752.7128 26275.5933 11897.2501 10917.024 55436.4716 7670.1434 34734.6533 25643.542 26845.2153 40001.7264 10831.2904 12971.892 15685.7004 48652.2171 2957 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Rhizomucor pusillus superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Rhizomucor; 6339.2246 6094.9068 2783.7223 15417.8709 5724.7893 8771.1977 3551.9184 129401.5268 6419.3905 6187.8899 2948.3279 2948.3279 5403.7195 10064.4001 7610.8923 9303.2899 8320.9637 5374.1622 3538.4335 4627.4893 10045.3408 3254.0935 18398.8272 6744.6165 11371.2612 3465.194 3892.6958 6892.8877 5353.1592 8295.7274 118468011 mdld Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 145377.5485 85231.8724 101533.4578 306543.7148 134499.9046 176544.6556 149583.6794 109436.7249 193108.5404 178352.7799 138142.5245 2383086.784 253514.9833 150579.26 217721.3302 166684.8824 166684.8824 108891.4892 148624.7938 99384.3916 154315.4929 1231152.0738 787728.2124 76821.0896 192611.9065 269559.7324 110358.3547 278723.9617 186379.3266 157258.2602 66266.1451 96621.6008 179035.3705 70298.4537 552168.815 156857767 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 223966.3883 18358.4569 65756.8945 34182.4725 47916.6513 9978.9796 68179.1758 154314.3488 41205.7045 51216.374 147022.16 83290.523 2448038.3247 78210.9968 116333.275 91189.8712 68890.5803 68890.5803 39787.2328 117374.0341 75117.1389 111011.8628 111201.2736 75165.8395 53809.6236 58310.7797 74503.8557 64154.3075 175572.7335 56661.4467 106981.848 31632.2217 62832.6183 81108.5884 73295.893 90100.4017 377520442 nirb Nitrogen Assimilatory N reduction NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 27062.0226 18781.5672 22051.4525 16902.9792 26108.5738 32597.9305 12094.461 17301.3837 25492.7933 36593.6546 643595.3025 20301.6689 23979.4638 13601.5865 13193.4769 13193.4769 18029.5891 32169.088 38430.7957 571818.9791 27799.0464 31295.8702 17664.0904 15829.3125 32070.9887 13120.7325 51344.1311 19937.0934 30081.389 14166.344 14056.7572 24566.6893 14433.5015 35784.5542 109455004 alkj Organic Remediation Other Hydrocarbons NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 5918.0881 3772.9759 11882.6979 8175.4519 20855.9105 4684.3678 8156.4121 338972070 pgk Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 11505.8721 15388.7488 7658.5041 8943.2215 6141.651 2933.6561 7904.9796 9153.4951 5458.7994 6757.9431 8676.1963 5818.052 4408.3962 4408.3962 5334.0995 10099.0225 4842.9379 10096.342 11545.7369 8985.008 3663.4409 13962.7703 16727.3322 16407.2979 75860.0878 18538.3971 10323.4971 17058.2727 4842.9696 10070.9108 6178.9352 284176974 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. 1-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 246182.8158 10261.1352 249331.8342 36614.601 43016.4232 26221.0642 38181.6811 73971.1194 32994.9672 75448.2759 39361.9789 654278.623 151354.0824 41555.2162 57723.1374 24633.5803 24633.5803 13025.6562 33940.9882 29550.1997 23686.585 37758.7439 28968.9203 27733.5201 18420.0995 38013.0804 31111.8113 292244.2986 54884.1207 53664.0583 36194.4697 101244.9547 26177.2866 14044.3316 95371.209 307354128 mcra Carbon Cycling Methane Methanogenesis Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 18371.0244 6223.0626 9484.1224 6497.3275 13561.6461 13942.5224 15696.3741 11071.454 110446.1649 9253.2512 8208.2964 6313.64 20837.2917 20837.2917 12045.8232 25600.5412 8977.1834 11102.2341 16037.4034 9421.1778 13363.4745 17135.0149 12778.764 11055.9533 451408.1323 10595.0803 13713.0581 5697.7364 16800.756 13666.3243 187518.1222 14254.6823 46520001 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4019.309 79437.4629 3902.9186 1605.5166 2624.8978 4970.7968 111022766 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 11356.5618 27806.0964 5429.8892 6901.889 4750.4788 18373.9591 8799.6901 9663.2158 12900.8877 5337.7297 5557.3763 268431.4387 11467.0045 8366.8978 6469.8353 9445.7073 9445.7073 14500.5311 10411.1963 4682.2311 4951.1649 13737.6617 58316.574 3353.2349 7895.6856 24691.064 3727.24 17275.4888 3676.8017 13845.0509 10964.4807 7893.8941 4237.4767 5788.0855 56787886 pcag Organic Remediation Aromatics Other aromatics Novosphingobium subarcticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 35846.8569 17648.633 6593.069 15370.0064 8000.7999 7629.4382 18643.1695 8942.2688 20756.6492 44098.9748 23641.7547 2877600.387 18860.3627 19279.891 47408.1899 26485.935 26485.935 9863.8461 44917.6889 13205.4737 20491.6885 41943.9519 16180.0723 10318.6702 13052.8657 26348.7025 54598.4037 67665.3725 26578.1277 26377.6131 9607.3157 18484.7658 15091.4685 10054.3516 19357.2911 393759651 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 83164.6194 14736.2722 19295.9022 2592.0701 17921.1266 19019.3781 11258.0595 125724.2185 11521.5085 14037.7174 6290.2231 6290.2231 20831.8184 32682.3647 4955.4259 4568.1921 14366.8569 3558.5679 5017.4452 12173.7499 17122.638 6668.8793 9106.0522 74656.4888 9711.5417 17502.4243 3973.2111 5382.862 226455492 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 4828.5741 4014.6102 27176.5899 4363.3614 3938.3469 8638.8358 6777.9156 3070.0879 3595.327 5122.4716 6894.9839 1823.1933 5916.3482 7593.2221 2022.917 217970679 ppx Phosphorus Polyphosphate degradation NA Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 5716.2767 6251.9641 34986.9145 4956.5768 11330.3719 11215.1996 17445.133 4892.0889 10407.1996 5284.9419 127034.0063 8538.3728 8086.739 5187.7262 3946.5875 3946.5875 3998.3962 40191.8091 10745.6743 8740.6829 15638.7288 15485.8689 8871.3798 5717.8295 15663.343 5781.058 23842.4629 14719.2265 13730.6637 6892.5438 7081.7336 7159.2343 14519.6736 13354.9365 134081588 atza Organic Remediation Herbicides related compound NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 105783.4241 21273.8731 8236.3348 12761.0106 593390.7503 8488.4241 14724.4382 15045.0622 39224.4963 45014.1523 25452.6678 516594.7641 184159.2878 24964.0138 32734.9265 25396.8262 25396.8262 32916.3001 49504.1119 52777.8029 88481.7397 39401.8958 17228.7187 21706.8994 25319.5784 42905.1817 18547.7717 49050.5776 42161.1303 29169.8607 14134.9176 34244.8711 118606.9058 24076.0675 19909.8738 229829969 amyA Carbon Cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 4388.1147 2679.3096 2425.1587 4252.9905 6226.6971 3246.4837 61325.8404 4045.4939 2408.5289 2408.5289 3657.6635 8363.1278 6646.4973 5662.0766 5952.7477 3762.1722 4130.8939 2797.3317 6690.5428 2921.4047 10829.4799 6436.255 7405.5729 2239.4968 3127.9908 6598.4825 4685.93 11290.7984 289208045 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 34479.1257 53152.1521 15227.9704 28650.3954 5879.5921 56264.1866 35958.6041 29833.8301 31542.3191 18313.2455 46926.7956 401042.3451 22336.9953 36217.9699 20712.3734 96392.7952 96392.7952 14562.961 35454.4819 31144.0868 23348.6497 26984.2969 33480.3457 11564.2836 13786.6385 32252.6862 21490.6578 48835.896 20154.4001 25129.1642 19164.8562 20490.8645 24523.8612 17829.1588 37381.7677 149913153 dmdA Sulfur DMSP degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6619.5598 31744.386 5596.3314 3519.8732 8559.9055 3075.4977 11847.185 8205.5367 4369.3422 144033.2864 9273.7957 9697.7663 12680.0414 6943.6108 6943.6108 5777.4306 10336.3862 16962.7472 4746.4948 9666.9721 6576.2299 3515.4375 8914.3585 17267.573 4782.9667 28321.9539 10179.8823 14420.0433 8887.9785 8767.9221 13794.9334 5552.5338 10238.6833 355532531 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 61648.2124 34246.9368 38878.6983 114123.5076 61501.1052 29330.6917 48502.9749 185848.627 32501.4128 47936.0424 66209.0548 37268.5768 1748509.592 84124.1317 69231.6587 71869.1887 40531.4303 40531.4303 74454.7931 59136.3603 57142.2448 49789.5727 67862.8482 67736.7681 39009.8262 43291.347 95205.3329 175166.983 129293.8165 57452.2495 83461.1359 60996.6022 41189.7179 40021.5468 112737.8989 100424.7836 157315865 dmsa Organic Remediation Others NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7544.7793 2732.1644 2401.5405 5761.5622 1928.7043 1928.7043 16485.0174 5144.9367 2120.4054 320334404 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 141795.2588 21897.735 7841.2264 32371.7509 15371.1143 6868.1531 13126.4609 9960.3476 36343.9412 22458.5116 398955.5804 18622.7805 89683.8871 37250.2569 27077.0668 27077.0668 10722.9506 35894.4168 15259.668 17760.6526 30208.7583 23679.3453 8563.3418 44562.6453 26824.9868 20893.0624 46026.5882 15393.8678 51556.2892 7771.2793 14161.3884 30533.7456 9243.171 11125.8783 237882275 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 23387.6742 41773.8189 9266.0064 14192.7773 8721.5004 9457.5242 58762.6917 12111.08 10534.9973 19636.9974 9094.1314 363983.3026 11945.9995 18848.0462 15910.9183 13239.6879 13239.6879 8831.0737 18979.6955 10037.4506 11325.046 14062.9718 19154.7257 8162.5297 8415.3247 19004.004 8707.4692 26648.1679 10151.5208 27604.8732 6473.8497 9587.7505 17505.9685 6561.4245 17802.6814 223586063 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15144.5743 6170.4762 3845.8311 8027.851 13365.311 3123.2431 10434.9939 8055.511 10576.663 39792.0348 9985.2971 23641.2783 4768.7527 4768.7527 4917.0934 24133.3218 9109.6978 5586.0866 26292.457 7944.6557 8552.8389 8347.9677 19303.9441 5478.6336 43332.3472 26731.2603 30187.8317 16058.9221 7593.3216 21474.269 3747.3446 9665.395 308805693 terc Metal Homeostasis Tellurium Detoxification Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 5892.1728 11231.0886 20131.8901 4479.5882 4772.3243 4270.3002 5638.2929 5507.1715 3408.9572 112784.058 7164.41 5611.9758 9725.971 9725.971 6437.3848 11443.7854 10573.3577 9127.7901 7243.0513 7695.0079 4712.3044 4927.8725 7495.452 3388.456 16582.167 15887.5069 15541.3884 3387.1148 6405.0288 5728.0707 3471.598 9246.6421 315019228 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8092.2534 36262.6623 6640.674 16102.447 7022.9041 4039.1607 3093.0057 5335.0454 6414.6244 6419.9926 194999.2841 6838.159 35882.3654 4700.5632 5000.173 5000.173 4968.7429 15094.5378 7909.766 14841.788 76554.4571 64857.0688 3926.6978 5798.4295 9373.1858 18301.9217 19576.268 9590.7167 9255.1857 3898.6923 8436.6414 17020.3549 6942.4839 14778.8945 167703794 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium ramosum DSM 1402 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Clostridium] ramosum; 244821.8738 2462.5958 6192.7371 5966.2641 74424.3749 3530.9337 4272.364 6415.1242 5371.4271 5371.4271 3740.8675 9095.0667 6131.1245 3599.3045 15931.2676 6808.6126 17109.7997 12472.8621 5364.3344 2566.88 17074.1213 6104.9071 2984.3207 4692.8261 317970297 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9689.067 10455.1524 4311.0533 13474.7593 3571.6137 10526.6924 8965.2076 15355.1263 131594.6216 5684.8238 301059.8655 162851.9447 5157.825 5157.825 3825.154 13048.7843 5188.4331 8204.1165 7790.2592 4641.6648 2749.2334 7122.824 7264.1247 32940.0031 17886.791 14933.4736 10549.0411 3722.3506 7439.2957 8615.6791 6878.1732 288917136 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 238230.3016 312973.9352 1146583.8306 113825.1878 121887.9929 46440.1232 127478.2172 286723.4474 141333.5224 160314.1479 237298.2577 217705.2192 2859361.2148 173239.5812 427780.2955 1702955.8789 333910.0033 333910.0033 157119.356 295212.8099 160044.7188 684127.0263 295339.6198 266768.8818 129885.7534 125018.1036 245282.6652 210581.2877 526500.5872 183763.0783 221190.6351 159507.3891 161171.1265 186798.1264 224786.6313 249977.615 314927296 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL044PA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 10656.9477 6809.1881 12901.2962 22521.2274 8771.6807 6118.6517 4276.4983 7399.0653 12045.527 8307.0118 1081707.1418 10178.2122 12349.0856 6786.1182 6786.1182 9053.0168 18179.925 10758.0612 12514.5278 104791.121 11945.218 8511.6599 6052.2401 12629.8282 32368.8725 28089.792 5122.4291 12895.0103 5258.4765 9023.7629 10183.9506 8737.3568 12660.8677 78102103 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12364.4443 504140.511 6934.924 17597.0295 2129.5235 3837.3713 3391.7845 7668.438 4223.2142 9081.5658 44476.3607 6761.7041 3299.6889 3299.6889 16245.4829 10622.3328 23344.8317 2734.3031 2276.2832 62745.4709 19043.9797 44284.0541 2455.9432 5410.4644 3390.8664 20476.1036 209516215 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 119235.4344 30058.0428 125895.4995 19092.585 32447.4767 22646.8656 91235.2123 40600.822 50322.6725 92648.9732 80531.4747 105944.1526 767751.2416 46051.6411 66157.3506 58727.63 57569.9608 57569.9608 50218.7177 109664.4016 72978.1388 50827.6421 350720.9932 838618.978 43553.9081 66247.5997 52817.0065 50001.4013 209018.7687 50227.7933 47426.5184 21008.5524 47898.6203 56632.275 35789.6151 73193.2105 317475358 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7677.8281 2379.525 2406.9849 3515.7922 5250.4633 9322.8672 80749.6418 5741.2951 7392.5046 6274.9617 6274.9617 4607.087 7779.4689 8231.528 5058.6311 5445.0504 9715.7795 4714.097 13342.4319 2384.546 17488.3925 5229.271 11236.7137 3231.1159 6135.2142 5106.0857 2456.294 217978570 Sir Sulfur sulfite reduction NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 16832.6124 12094.1256 14175.4085 3381.0297 11337.9082 6535.1541 29692.5077 14669.5447 357671.2631 9059.7114 6603.758 17663.9603 7557.8716 7557.8716 3438.8306 19170.7744 11467.8349 7392.5931 6012.6127 18674.1837 2910.0296 13186.6136 23336.9181 8609.7975 25918.2215 19990.9745 14068.9631 6639.0282 11951.7086 7721.5581 18203.1406 84500486 FBPase Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 165257.7176 54502.2417 54109.5184 45903.7603 69079.6363 34919.1502 50807.3732 33586.1423 39722.0488 47033.2706 77113.1954 52248.2668 1331677.9014 77473.413 52843.0288 85627.409 44702.1427 44702.1427 37909.0992 88146.0867 34013.637 126619.1162 118641.0606 62356.6786 28056.7582 33179.1537 59880.4832 30204.5595 105260.6532 63582.1071 54122.4914 27016.0024 48322.7946 48697.7738 26953.8492 56187.1854 192897546 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 15088.8314 6996.2806 11274.9029 7099.5102 6268.3015 3469.9404 33911.1864 9758.6388 10000.1616 4862.8826 130852.5699 10128.649 11104.9306 12574.1236 6495.7264 6495.7264 5205.9403 23316.7331 11182.2498 53489.9341 8191.1559 23747.3199 6884.3096 6747.2455 10259.0709 4462.7052 15689.6604 4019.6189 15769.8212 4410.338 7626.2648 8614.5459 9001.7813 11354.2986 262014342 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthrobotrys vermicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Arthrobotrys; 9739.5381 5584.7544 14180.3197 94096.1765 9726.0965 6751.3189 8239.1204 14905.2944 9740.3635 14868.6652 6332.1524 268271.399 19262.755 13688.8319 12890.1418 22834.584 22834.584 188871.8152 25240.9679 27531.2154 13388.0113 50384.2185 19314.7603 4168.1497 8390.5887 45636.7245 10510.3112 30455.5284 23012.6129 39576.9218 4419.8248 9044.559 33469.2767 5062.4679 16576.5014 169793380 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 65684.3191 38904.8715 49672.2772 128125.5758 66894.5517 27970.4183 57873.0124 90473.2123 45378.5956 48480.7522 64463.8743 57058.8539 1380725.6491 66069.263 95506.9094 78171.9062 58783.5056 58783.5056 41584.0045 70078.4746 49800.1868 61031.2623 104846.7715 82141.2319 31321.8487 54974.6019 76141.0013 49522.4465 157750.3726 69323.534 76834.3352 33035.1634 43111.3349 63670.0101 37645.0601 81723.1609 345862489 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 3795.9853 4189.6267 2662.595 302478241 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 8658.8794 20928.8298 13284.5404 18160.6373 13590.0385 12356.4506 11767.4765 11506.1262 14511.6662 11927.2701 13500.1301 15117.0423 19176.145 30974.0061 27433.0299 27433.0299 8058.4517 14262.4272 14279.6378 4589.8911 6485.0158 4039.2576 2190.9841 33388.7426 19670.9517 9136.6221 18608.3753 11042.7599 17435.0024 7947.4352 8637.3341 12596.8111 3283.1401 6263.8548 111073771 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6812.4379 12448.7715 10648.1327 24672.9331 9282.0318 2223.7188 7397.2745 4579.8686 6056.8253 6994.5204 73361.8303 5184.7625 4152.1981 4609.1301 2989.2895 2989.2895 2730.3279 8243.935 7108.9396 7625.9916 4680.5637 4666.721 2833.0853 5720.945 4283.7188 9240.9793 8061.1088 10857.7094 4397.1381 6743.6856 3977.3653 3384.7127 14285.0137 328803293 amyA Carbon Cycling Carbon degradation Starch Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 5493.7269 4636.4227 4303.6143 3448.1866 3970.2525 88219.3448 3924.3754 1959.6418 1959.6418 2905.0302 6625.3364 3751.6528 4498.6443 6682.8903 2712.8801 4116.8841 6939.2895 2214.8369 7725.8539 4935.183 2671.5608 4228.8712 6149.9503 2411.1533 6618.0232 77459481 terc Metal Homeostasis Tellurium Detoxification Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 12668.7245 9677.5594 5205.369 6500.7656 6494.5426 6940.7604 27627.1213 6197.5039 135370.0155 8203.0315 10049.6746 6261.5106 5486.4605 5486.4605 5023.3713 15786.1319 11414.0145 92560.5488 31727.836 7488.5571 4474.7064 14535.5784 10914.6099 25741.9646 18160.7087 8537.3059 13559.5785 7905.2139 27833.5313 9951.0329 16407.0023 10081.6112 33391479 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19200.3256 374310.4113 4208.1119 208428.8071 6041.0416 5410.542 6595.1533 10534.5812 28186.4922 4147.668 8079.5976 12202.5776 6306.5611 16923.9633 3138.2686 10384.6581 3184.9222 15544.5386 110825110 nagg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9392.2622 31930.2948 5965.7386 10113.2696 10936.9685 2851.6423 17476.0485 5258.9014 7930.6947 4070.6427 161406.9301 213537.9556 8292.4332 5873.3161 4500.8375 4500.8375 36481.8658 13362.3547 20434.6857 16830.0467 15711.2262 8562.4794 7852.0547 5000.3288 11337.4971 5264.2754 19888.4154 13507.4393 13081.2975 4498.6208 8685.5639 50462.149 4895.3643 9972.8106 94311115 ppx Phosphorus Polyphosphate degradation NA Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 24719.8882 116415.4839 9819.0506 23145.4047 24205.167 16077.9117 22942.151 33444.2608 18427.6 36326.9178 304542.1068 89075.3574 34367.3271 11344.883 14645.743 14645.743 14971.7984 26819.5232 16214.0132 16922.4831 77795.1419 18947.1037 17607.6206 14299.7635 14936.49 11104.9202 57598.7166 44251.3063 27705.1672 11888.506 11370.4205 22118.6406 7712.352 27240.9379 294659523 phospholipase_B_fungi virulence degradation NA Debaryomyces hansenii CBS767 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Debaryomyces;species:Debaryomyces hansenii; 21379.3561 11773.2019 16103.1012 14970.1953 5759.8158 12509.6718 11945.8957 8591.1242 18751.3978 26438.0882 11462.6575 512475.1594 49234.0692 28676.7794 31622.3729 19549.045 19549.045 18709.936 22324.0599 16825.8858 19781.6777 43316.7477 26358.9683 17129.7352 10235.9484 28637.31 9452.9332 36746.9332 11680.1881 23878.9904 8849.5771 18251.7861 14803.4636 11204.6993 24023.8004 404387680 chnd Organic Remediation Other Hydrocarbons NA Turicella otitidis ATCC 51513 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 4857.1532 5198.0456 15273.2301 9806.2436 9073.5357 9443.1127 69921.9488 169793654 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 18437.4001 15098.508 6013.0138 8113.8251 14492.3418 54729.3409 14236.7469 15525.8236 31921.0396 9783.601 1390091.3095 12498.1628 31477.1305 43201.8235 10335.3805 10335.3805 9769.3172 163152.571 14405.924 5336.9441 10472.6594 12640.9406 14294.7918 11886.3423 83255.4829 111880.6191 54745.8896 11724.249 599077.9485 12714.6248 34921.8603 14503.1696 11276.2281 11236.5733 66876307 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 11722.2472 16575.2895 6967.3721 6571.6031 12815.2933 5349.9962 7314.4159 31386.2759 7577.6885 9551.1366 10082.8133 10635.0902 322884.7432 12899.0572 22770.0565 17052.7433 7206.3115 15725.739 9171.2391 7070.10425 10351.8304 8746.2531 4223.1799 19710.3553 13235.9642 9082.3693 22533.5579 26916.6338 13842.3351 8668.9846 17461.5055 11058.1575 8968.9406 5173.085 307218394 ppk Phosphorus Polyphosphate synthesis NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 6521.2014 3550.7064 4077.769 5013.9715 4261.9152 4215.8784 10014.0505 4168.3296 4670.4404 5094.0966 6191.0066 2012.9391 12116.1123 6528.9807 6085.3368 2664.8251 3409.313 5463.8209 2866.3211 6975.7344 322718535 phenol_oxidase Carbon Cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 7332.1442 4098.1258 62227.2988 6105.4078 3528.0757 3820.0359 6635.3223 7307.4081 2681.3829 7371.8046 3126.9054 5449.8284 4978.998 241759012 cysI Sulfur Other NA Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 28915.0493 31608.2801 7612.442 65496.4058 5152.4058 11201.1017 12350.1143 9665.8179 19455.5409 34206.1805 24150.9716 1411582.0898 76746.8473 40360.2319 73103.9978 79889.0443 79889.0443 56813.4254 53017.2556 23550.2995 53914.9169 361917.4983 28957.7655 26329.4371 52542.8629 30350.6083 11861.2227 69570.4392 53306.6572 75800.7504 20568.7461 22327.5673 28419.4245 25846.5091 17091.6715 126667582 arsc Metal Homeostasis Arsenic Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 25737.8577 75273.3886 12974 4754.3661 23284.159 8714.8007 8167.0313 15162.0178 10275.6861 7828.5935 137925.6839 21350.5504 9687.4901 14737.8482 10211.9936 10211.9936 10926.9921 23254.0676 10050.9121 12588.3733 18049.1027 325033.4418 7871.8269 11799.3646 13435.7593 10482.0645 36538.067 6741.3296 12873.0413 6278.1388 11387.5393 16534.8452 25771.1859 17394.7745 224283115 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 10560.1295 5506.0359 10843.7931 10616.0681 4967.134 58933.1387 19335.4607 16111.7708 7803.5923 8247.4537 5455.0758 130005.3295 12487.8161 8090.8816 5542.9318 7802.3441 7802.3441 8127.237 19931.0838 11506.9665 13790.8494 12755.9724 60887.9483 14359.8673 7003.4179 15643.4224 5016.385 20380.9214 8011.6084 16168.4312 6397.046 7166.7664 7469.7533 4656.6536 12569.7575 119386205 pcag Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 6184.016 42340.4896 12012.5873 19310.4603 10668.6164 24342.5275 4338.8411 11368.5979 8367.6951 3553.4461 5748.5212 5860.6232 5860.6232 7627.335 3977.6404 71666.032 62206.5822 3796.0101 6042.4099 6425.5363 8196.6615 22779.6081 8817.0253 3870.3189 5029.5539 77382551 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 16551.3642 23019.6252 4699.9075 4579.5555 32071.7566 35481.0862 16203.2166 31792.7308 24584.7921 18230.6706 218293.6279 18553.7807 24842.9968 16423.8598 13876.7486 13876.7486 8723.5816 38619.3885 17291.4415 12589.1578 119823.4212 12249.4553 7214.5614 17084.3615 26355.0599 24384.3415 26961.548 40798.3783 18319.8473 6599.3741 17944.0528 11830.4347 9030.2705 43626.9708 388547285 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 58722.7182 8287.523 16282.0296 223186.6912 13221.0605 12388.1078 77544.7757 22338.754 18779.8053 410762.1904 11199.8706 7410.9304 37898.8336 9995.1257 9995.1257 5178.4258 48018.6928 10631.0169 17962.2952 11839.9861 14476.8272 7943.3173 5232.5269 6840.9898 15550.2303 46604.1997 25447.4148 18843.3638 30499.364 18264.5542 20789.0254 8094.0523 6290.788 18182588 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11177.9136 74378.3547 6735.545 4343.9382 32884.5009 4981.3452 5505.5558 6517.8393 4833.9955 4833.9955 8620.1487 5105.9261 2215.3805 7779.3181 5192.9722 14492.8076 5401.7539 2616.0603 3971.3304 8091.6747 2217.7617 311229243 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 96941.30885 21321.5275 57159.0739 63366.77195 38727.00045 37185.76995 66598.469 66969.19695 773784.2678 34605.66605 56680.6281 75144.1887 74991.1506 95639.77005 116949.57385 54008.3532 39288.0341 114021.0157 255936275 pec_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7690.8084 6165.7941 8541.8558 10703.4329 5828.0617 6376.0783 5077.75025 5313.4925 6010.65055 7756.99055 3676.89045 129490.388 7309.27125 6788.7467 7729.7768 3689.07415 3689.07415 4798.08305 10608.1669 7695.60225 6572.1106 8269.3749 8294.9293 5085.87305 3652.45945 10229.9361 4072.94465 13886.08915 5647.83495 9564.4261 4878.47695 5607.3575 6033.01005 9916.16285 299775071 amyA Carbon Cycling Carbon degradation Starch Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 6417.0745 5623.0065 7411.3138 18838.4068 6778.681 3950.8305 8108.9229 8794.2642 3208.1231 156060.3156 10050.3185 7534.1241 5156.3072 2995.0681 2995.0681 6585.1034 13292.5362 8958.67 12975.3057 10831.7078 11403.1248 3679.8323 3790.9254 10249.9091 5513.131 18729.4819 7682.542 10363.6703 5752.1554 6532.7544 5767.1588 4401.7533 12665.6759 212171520 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 52033.553 10713.3709 10700.4836 24586.2271 42666.1441 11350.0043 11128.0142 15719.8099 364156.095 34484.1861 366075.3459 26304.534 22499.6208 46518.0713 44422.4472 44422.4472 11783.2042 45736.101 27651.0474 267609.0318 168081.0835 29162.1171 13614.9027 31755.7298 34947.501 12611.819 60187.6018 24105.825 35397.728 12204.0682 26008.4911 26972.2127 28104.9891 31560.9377 171320754 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 4508.7608 2435.6491 2177.9173 2292.1726 4819.1006 8114.8586 6617.3173 4131.4732 4752.4089 2250.6586 6745.7809 4042.518 7158.9135 5561.6377 2382.5971 5059.5815 196482334 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 20950.5408 16144.5713 15221.9421 11053.6584 11367.5038 11415.553 47557.9688 15189.8806 24891.3129 11660.1717 403048.4107 23471.4314 19020.4594 12522.9886 19328.1395 19328.1395 16463.6585 33516.7891 18926.8503 24894.3023 25706.522 36341.7831 9871.5346 12046.1345 19319.0227 7951.226 26988.2335 8623.4502 23481.4957 14086.756 22257.6507 20753.6511 17083.5631 77634.6234 163758498 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5907.3117 7483.5489 16751.0125 101599.9157 2637.647 3153.4086 2196.5646 4721.6286 6060.1954 2848.1008 151169.8584 5804.2438 6695.972 6718.9007 7208.5546 7208.5546 6687.4737 12161.9733 9404.9126 5371.5636 3960.2406 4196.5123 5463.6696 10148.9296 3354.3032 17320.4051 11719.0585 12480.3648 4780.4894 5338.3711 13707.1629 4337.9696 5867.5888 319438400 ppx Phosphorus Polyphosphate degradation NA Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 185584.7231 20891.4789 18836.0339 49376.3749 12182.6978 29002.8114 31867.5836 24045.4059 129210.0266 57098.6198 54117.6616 543710.3831 35781.613 39368.7048 68075.6248 50262.4091 50262.4091 28269.5122 158539.2312 53592.696 59300.3459 124969.7405 99568.6757 49781.0516 36844.7775 217323.5986 40396.9257 182226.4995 55069.7852 72840.9454 49932.4109 38978.3645 55300.5997 44619.0865 49688.4358 164455288 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 320215.9318 30326.7555 4625.0075 25859.4272 3981.5663 15364.9534 2662.1033 4370.2078 13767.8538 5431.0868 126706.4556 9560.2409 7613.8054 9961.9346 10020.4378 10020.4378 6853.6446 15985.8033 12338.6076 27536.829 7633.6553 10929.0187 5633.6864 10184.3103 10854.972 20101.5637 21104.4455 12323.6418 15162.28 6832.4883 7251.4084 7010.4902 13920.0784 11760.7745 283786071 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 1193790.521 2003972.1259 2220758.4825 1783369.0689 3601366.1293 1968265.8816 786896.8247 763818.8747 948550.6311 665405.2989 819636.3147 383039.3975 18021810.6552 871170.7826 916498.6775 2038591.49 660421.1679 660421.1679 501279.1591 689749.819 600685.7601 1679974.1779 1493485.9227 3076784.1136 467368.2731 459158.899 1259175.401 333549.1031 1237541.072 920391.4104 882303.4018 469839.9229 400458.6945 449682.1693 442084.9023 2164823.0383 406996355 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 6144.8773 11179.5604 6224.9985 6252.853 2855.5961 5868.0312 6877.4649 88233.6741 7426.046 2434.6997 2434.6997 3823.3417 9449.4175 7146.114 6542.6061 8787.4861 7019.833 2629.6495 3780.5258 10506.2809 3145.7878 12086.5181 6507.73 9860.4868 3337.3837 4430.7377 4262.0419 3919.1585 7981.0208 167896555 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 7894 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 6386.1096 4290.5474 15583.8356 12495.4188 5192.8064 3174.6641 4985.3181 6276.4773 2456.0944 86090.6957 5385.5159 4805.2872 11997.0867 2779.2777 2779.2777 3918.5768 9778.2786 6641.8995 7779.2551 14467.1505 5335.5782 2485.7255 3630.5061 10476.4476 2879.4425 8728.6517 9196.351 8772.2097 2950.8081 4609.3732 5516.8021 3135.1789 6145.2779 223714308 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11413.0113 23705.6441 160482.3925 7484.5135 16904.1569 6493.1514 120220.8683 9453.1848 6130.2777 12559.7632 7174.5688 254310.8271 6201.9106 7897.9301 57508.2073 5175.1755 5175.1755 4263.7403 12212.7522 5906.4926 21750.6307 13104.8899 11502.6653 45723.7223 5435.0635 16686.6628 22461.5411 21321.6966 9551.5122 13159.8338 3892.7877 8147.7239 10873.1197 4474.6838 11446.9149 116250444 pcpA Organic Remediation Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7298.2359 149123.89 4365.5615 2416.2581 2963.1685 4338.1499 59970.9341 9226.187 4144.1299 2042.3558 2042.3558 4507.2783 11845.5948 5568.0688 10450.2445 6217.657 19319.6141 3063.4683 6741.8202 2695.5662 34877.6984 13920.6846 13642.891 4046.4349 3304.5828 13250.2728 325665409 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia enterocolitica subsp. palearctica 105.5R(r) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 5617.6766 14936.3411 4990.2801 5716.4881 3315.7622 4568.834 16363.8421 73012.6113 6177.5032 5614.5405 5449.8725 8018.1297 8018.1297 16853.2372 4654.578 8584.7762 6440.7375 3318.5003 7082.4524 14042.0291 7670.9474 95374.5967 4956.1622 7004.8707 4319.2532 5092.2997 8121.2487 38360.2486 359290661 ppx Phosphorus Polyphosphate degradation NA Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 54136.8095 13647.0233 10603.7858 5523.3294 4487.4582 5027.1905 4163.064 93921.9447 10662.2353 8353.361 6320.889 6320.889 3838.7439 19468.6018 7637.3814 5086.9552 18254.31 9526.2194 3390.0721 9771.4916 9149.1514 2993.3566 16113.3071 8140.258 9754.2355 3055.7284 7001.428 2867.8082 8936.7189 21224407 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 30495.5677 22271.7657 125968.8389 14980.0322 12291.4174 80196.4061 11832.23 40289.0811 64687.6802 24760.3234 655053.3176 31423.6323 19506.7007 24285.0373 29760.6092 29760.6092 30697.8553 42673.0588 25064.7664 48789.8665 183941.3991 58965.6356 68013.7019 57437.6132 36630.5683 22624.9269 261009.2459 35875.739 33014.8593 15309.1453 17169.8609 82089.7674 13263.8655 49738.2085 357021843 amyA Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 37968.1992 6690.7566 13271.7842 4140.4328 8996.0187 19545.4502 6668.7619 8173.1922 11754.3132 448530.3937 11041.5364 11656.5255 4182.3536 2726.7015 2726.7015 5293.2782 17957.9867 6640.1468 16693.8196 10372.8132 10825.1913 4781.4599 8964.4535 9036.0141 8476.9799 90520.0431 41217.6479 33312.0901 7923.1204 10836.7348 9955.5604 20195.7426 389819079 ppx Phosphorus Polyphosphate degradation NA Planococcus antarcticus DSM 14505 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 5415.5804 8432.4088 2678.6842 3374.6512 4422.7695 6114.5216 90406.0063 4163.718 6490.9846 3104.9893 10288.795 6611.4726 10769.3011 5608.5818 14583.0013 2803.5471 4329.3918 6647.1514 3630.5027 17749.8206 9780.5786 5458.6277 4673.899 3485.6635 4469.9275 5378.7858 345099043 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 20897.5325 19599.0066 7653.2958 4833.2744 5137.0936 3145.3077 22240.8366 3754.6279 3855.7305 131037.5732 6943.0689 8843.202 17406.5488 8751.045 8751.045 4069.9038 11252.806 9772.9946 6816.6043 23196.3923 6615.2573 5111.4904 14068.3899 3797.8908 12874.9882 9503.0782 12515.4804 4814.8016 5921.4471 5645.0236 3823.2219 15619.533 322385707 pula Carbon Cycling Carbon degradation Starch Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 22421.4881 27011.0252 660506.3333 22790.0509 21352.0228 181268.9017 35574.9384 25081.7049 65701.3935 43514.9489 226935.4879 39925.0121 24289.6788 263311.2226 29655.8493 29655.8493 20812.6842 50082.8763 20618.8274 187820.5082 48720.5415 32453.6132 17428.4651 19781.6919 30582.623 26448.5781 98167.7126 21018.812 37946.885 45507.1259 40322.9998 25405.2134 30943.0222 66817.3515 295895946 alkk Organic Remediation Others NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 3959.5382 6441.575 10134.4103 3486.5461 3286.5417 3027.9942 2561.0326 237828.431 6388.9625 4315.4775 1883.446 1883.446 7952.7264 5026.3166 4059.035 5509.3295 2148.4034 5951.7527 3687.2207 8157.5981 4925.0326 7614.3943 8360.9373 2645.4032 5382.411 3390.5015 126708478 urec Nitrogen Ammonification NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 14600.8967 15795.0891 11498.6828 17130.6396 8132.641 46604.4105 258698.3624 19655.1156 32430.7503 15923.5695 9759.0348 118572.2803 7832.6269 6561.7458 6599.434 22531.1912 22531.1912 4607.6386 17135.7548 9014.3338 14252.6495 8578.0698 18869.2133 8565.9883 6456.0703 14256.4468 7673.5519 25038.5503 12071.3015 17888.4137 7720.9268 9527.4542 14437.3136 10392.2893 13714.5498 298549895 amyA Carbon Cycling Carbon degradation Starch Bacillus acidopullulyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3968.1582 9503.4575 6227.1847 3681.6017 79241.4647 4016.3841 4016.3841 3134.5644 603098.6192 6222.2475 1768.0182 151302158 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio sp. JD160 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4424.6264 2076.1412 3950.2055 4021.8282 118550.6637 46188.5451 6515.2232 4158.8229 4158.8229 8761.0181 5582.6787 3845.2304 5600.2266 8727.4811 11355.1 8427.2344 6028.1945 3580.4817 4041.0666 3197.6329 2761.1616 219664370 bphb Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4657.5322 17582.7952 58277.2277 8795.82855 3153.5505 12783.3618 10649.1161 74517.497 3621.372 6069.1095 4248.7607 27821.0154 27821.0154 4946.0695 8263.294 6965.2225 4067.5412 17927.2553 10418.5322 4421.8931 4650.1713 5682.4677 7318.2241 16690.3671 4366.4974 4972.6172 10139.1439 6188.1565 9390.402 3986.6118 119492.2597 398351749 chnb Organic Remediation Other Hydrocarbons NA Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 69318.847 22565.9749 453696.4976 56184.8082 106913.5115 6300.9741 104565.8857 51879.0236 116858.7594 70671.4361 82134.5933 44633.3217 1212221.7732 97027.0241 139251.3292 105834.5454 70254.7138 70254.7138 42935.678 100363.4913 86457.1943 129675.3402 81453.5175 96508.2074 48128.3047 51816.3953 71175.3054 45169.4624 144583.2556 142080.4873 80889.9815 35972.0903 69781.1935 63732.0586 52262.0141 108963.6387 293189346 xylg Organic Remediation Aromatics Aromatic carboxylic acid Actinomyces odontolyticus F0309 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 39635.6747 24274.0951 65239.9843 61160.7491 146010.9293 23670.316 53154.3287 46900.3807 33625.9991 45143.9619 22680.9235 617846.0091 38116.4059 58228.638 61929.627 37441.8111 37441.8111 35125.2757 61937.8067 35291.2784 37869.5571 86795.0159 175880.4138 41762.9807 27677.2484 57271.1103 33754.5784 112377.0026 45232.105 49242.5062 20557.9316 41903.932 70673.8136 26583.5622 93453.4703 118761912 nitrilase Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 662009.0222 266854.9592 345820.8998 286866.3028 475489.0221 1304622.9831 271897.3764 554151.8922 235771.115 318438.5308 435652.5899 353229.9012 15742944.811 468381.8521 518816.9006 896700.8093 511741.1083 511741.1083 473641.8135 340346.8807 296347.6947 399180.1502 977979.1076 455249.2514 273872.0377 274899.6064 348012.1097 301446.2096 870520.8944 305824.7163 450827.8037 343821.6269 267342.1903 284492.3014 293171.7863 642823.4196 269935729 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 8481.59625 12402.94505 72865.1268 5872.9242 6516.5311 9373.6464 9981.6483 10209.12035 115262.3836 7731.7685 10774.7404 16869.096 7728.1657 7728.1657 5017.9667 9465.70485 7277.2979 8922.0693 9927.1896 9638.5396 3790.76505 5990.7384 10358.9585 2983.68885 13329.6517 10191.9025 11009.0162 3434.90735 6400.0729 6669.45075 2378.00795 375289747 amyA Carbon Cycling Carbon degradation Starch Corynebacterium diphtheriae 241 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 167924.8169 18044.4376 16777.9987 25977.9151 14272.3383 18727.7825 36448.1292 19346.8618 22982.7426 29620.9594 39782.6747 424051.7355 34363.9917 43887.2077 30813.7946 50060.4744 50060.4744 21415.471 33617.8378 29869.4646 17976.9583 46915.2677 41358.5806 16985.784 24545.6432 46915.5136 53485.1937 95333.3433 20015.7878 33124.2424 15470.2743 31164.3007 30129.0136 14227.5056 26702.9936 325052131 exaa(moxf) Organic Remediation Chlorinated solvents NA Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 29966.2081 21302.2405 21209.0803 21129.4225 13816.2102 17097.3864 19128.1474 10491.688 19569.3929 27051.5727 13783.4611 496917.7779 30926.5487 28891.9229 33392.5619 17544.2468 17544.2468 49114.2787 28181.7739 23286.5192 22996.727 52786.0979 37728.8232 16676.0316 13700.4748 30771.8632 22010.9018 47830.4767 25586.9234 30266.5421 31059.8692 18318.0863 16813.0679 219355.606 79404.7271 325923248 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 4753.6013 2509.7793 16760.0356 3924.6608 3786.3622 53996.2539 4133.8212 6930.0575 21297.0848 21297.0848 5784.3925 4805.8287 5394.7537 2321.8909 2957.1594 6241.7971 6980.0875 5207.3809 5344.7121 2471.5852 3601.8696 3193.9397 329119813 narg Nitrogen Denitrification NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 19978.1185 499093.6153 8374.3529 24587.4661 5220.0598 10621.0432 10010.1965 6934.0807 10095.6917 16346.0794 6710.5772 262537.0561 83320.4151 16058.6423 10772.0225 10345.829 10345.829 9639.666 16716.8269 10456.1007 21442.8627 21806.7202 9366.3414 7838.1558 5761.4895 14829.4441 15985.0341 16946.429 7082.6608 13339.438 10450.9573 8351.184 11136.0858 9417.5815 11285.1818 188499826 linc Organic Remediation Pesticides related compound NA Clostridium botulinum E3 str. Alaska E43 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 4429.9417 7430.1122 8507.9446 4143.4712 5396.7743 4178.7018 4425.9528 4051.7121 3221.7605 561217.4571 4384.0335 6798.4156 3839.0172 3839.0172 5162.1202 10788.3229 7983.8979 8963.8583 7407.0725 5739.6006 2753.2425 3104.228 7889.22 3214.4466 10923.0669 7646.8432 9040.4247 3175.1961 5503.6272 4844.6973 3705.0674 12025.024 310815309 PRI Carbon Cycling Carbon fixation Calvin cycle Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 9305.4516 5779.2968 2625.2683 3324.4532 2737.7659 4356.5711 4356.5711 2697.6893 9020.9255 3878.3898 2522.8689 5035.4812 7560.4897 2825.449 5453.2363 10971.6382 1953.2147 4802.2145 870833 xylanase Carbon Cycling Carbon degradation Hemicellulose Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 28519.127 17436.7702 4802.2808 42742.7113 4935.1193 4674.3732 2926.0062 5537.4019 5255.1873 84507.1254 6576.7029 9625.5721 7293.6012 43473.2033 43473.2033 3134.7427 13526.8399 7181.6736 7171.1482 7504.5116 6888.8844 5135.6677 9959.7631 11693.6578 43401.5834 13913.2845 8817.6473 4195.4422 5259.0973 6236.3699 4306.7187 8233.0636 325168807 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 45999.1006 25242.7482 71307.3221 70402.8918 17240.4399 10727.5242 41937.8372 8120.1572 12944.6747 23526.9092 22587.7004 241608.8981 11778.7101 45744.6758 84873.506 11095.4585 11095.4585 21513.6651 28015.0648 19360.8143 29348.9654 1441084.0432 48923.3605 107657.4665 40722.7706 43276.6923 15702.3718 94992.1997 30651.0016 19104.4965 19981.1489 20134.1884 47390.562 34937.4174 16300.5877 145357127 actin_Viridiplantae Other Phylogenetic NA Ostreococcus lucimarinus CCE9901 NA 40441.2758 186676.3727 13906.6205 8369.2415 9124.2918 98728.4666 6333.6527 13834.7471 21324.1312 17816.6001 186366.2555 17566.0341 16474.6331 23453.1504 25090.6461 25090.6461 14110.4322 24145.8816 15510.4114 20414.851 14760.803 8587.5573 29617.847 25312.6859 24655.4663 8278.1818 34594.6092 34919.198 40448.6912 13038.8948 15748.146 17143.8579 11084.0118 11875.5434 359767363 amie Organic Remediation Aromatics Other aromatics Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 4287.3172 3587.8467 2622.218 8842.784 4068.3211 6861.4997 5081.381 3003.8063 3003.8063 3389.5292 10392.7462 5734.4648 6115.2564 14369.3615 6579.4406 3120.9193 66182.87 6413.819 3622.1636 14106.086 15582.1882 8478.7242 2054.4583 5392.8366 6758.7401 2687.6366 345014868 alginase Carbon Cycling Carbon degradation Alginate Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 35202.8831 23757.6812 19149.6169 20268.6246 11773.7859 14311.1541 25133.2169 15284.2588 16911.215 34340.8941 206327.3884 9878.0273 18333.5528 19432.9845 21182.1889 21182.1889 44920.9586 40167.8064 10903.9922 37727.0335 21564.4635 20972.3529 15990.9766 22237.1218 54935.7348 25694.5385 52192.7071 24261.6153 19287.1403 11934.0487 21553.6825 29559.2873 74290.339 123883.4359 374326810 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 8051.726 8003.4589 19905.8766 6695.9807 5777.1517 3174.6949 11017.4812 6471.6125 4890.2346 227846.6438 10551.0934 10380.6364 10885.6642 4949.4361 4949.4361 5803.3163 28269.3024 9140.4584 8016.5372 8921.8194 8021.6182 4599.676 4977.0416 19222.9257 5233.1142 21152.0162 11978.0861 17413.9055 25795.8802 7772.3056 6552.3321 7743.4947 21239.5612 58047670 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrosospira sp. PJA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 5361.9226 2017.1175 5306.206 2762.2395 5451.129 3075.5884 11343.9321 6864.2309 8840.254 9285.9782 3831.1923 4329.5234 2497.6709 15908.4417 320151431 gdh Nitrogen Ammonification NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 8330.8226 2740.6806 3584.1197 2479.7149 6545.6425 7633.7217 3617.1559 137787.0298 9033.9527 5236.8737 2975.935 2975.935 4543.4709 8918.8403 7291.0894 6464.2808 8052.0171 8459.6743 4297.5709 2772.977 5067.6474 5379.5268 4165.043 3693.462 8460.5846 2734.6388 5391.4258 5119.0208 4819.3591 7188.7627 254572670 phospholipase_B_fungi virulence degradation NA Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 6723.2776 6001.3799 3350.8141 2186.1289 2615.6262 5919.8621 5868.8764 88715.9088 5999.8041 7150.9264 4989.3583 2619.2875 2619.2875 3705.8092 9840.654 6995.4482 4517.8597 8968.4572 8311.0449 2745.8943 4050.9462 8918.2953 2075.5292 12421.167 4906.5058 9125.2792 3737.674 4500.4512 4348.0906 3682.1219 12021.4368 126704824 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5028.1751 11877.7055 6499.9021 28173.5452 49748.5197 8200.7984 7472.4511 7370.7269 6925.0011 168020.9729 24043.1509 10887.3896 6493.3126 7765.8069 7765.8069 10482.5459 16923.5156 8541.9138 6503.7168 6582.2296 10614.8253 3571.6359 9002.2141 22031.2142 4757.1431 26164.7686 8566.9095 13137.3431 6332.5287 9897.4071 6482.5057 5351.2878 5471.4648 395007215 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 22938.7033 13190.7118 24806.6022 15019.4565 3374.0751 28808.1949 8692.1912 4498.9135 11489.36 13078.8677 3493.5113 19372.3944 6869.8513 12773.9012 12773.9012 5835.3273 22954.7149 8604.0506 6146.6323 7713.2596 7206.6161 8805.6787 6560.8855 16482.3294 9179.6984 43487.1246 6172.0552 14763.5335 6993.7435 10209.8975 11364.3225 9105.1143 11494.4124 139437218 ppk Phosphorus Polyphosphate synthesis NA Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 76833.7845 19200.2096 224804.3155 55742.0549 115908.6243 89294.8834 55442.3073 73194.4594 63089.3149 37004.5048 365639.668 31832.2251 1064019.1615 71711.3897 89107.8223 102642.8095 55218.3993 55218.3993 52008.9573 65339.2381 51774.9717 170003.9908 52261.6958 107871.77 40996.7567 36431.8154 74847.8704 34620.1831 115073.4544 105973.4037 94329.8699 32017.0671 55631.7666 56684.0787 80894.9059 65431.1415 28971827 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas sp. P2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 40833.9003 3855.9363 3065.7204 3440.5682 6208.3158 2661.7523 126790.4397 3813.192 7998.1937 28033.122 3644.213 3644.213 3229.9523 6302.162 3900.1518 4647.5566 4192.4454 26166.1683 2326.5922 5653.9213 2713.8032 9135.9889 19453.7199 5807.8977 3876.7294 9135.057 5086.5372 374922789 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 35024.8486 14358.458 18590.5998 16006.5491 11907.9313 6535.1688 77097.1551 53539.114 68535.0273 48784.5964 47516.9591 46591.3271 2007294.4102 28407.2535 67909.5711 34270.9888 48726.8899 48726.8899 40973.8006 118072.2548 24651.9687 28513.4476 51442.0627 33268.3085 41383.2149 21626.9697 20820.9563 57475.237 120805.5928 23148.4191 51211.6764 71925.3807 85325.3829 36818.3747 32202.4864 46085.8936 372488227 PRK Carbon Cycling Carbon fixation Calvin cycle Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 7382.272 7093.5324 5335.2615 3469.5776 4294.2923 10162.0985 7058.0175 4708.2461 7788.2975 75342.2611 4671.5349 5271.9923 9153.1842 4710.5643 4710.5643 20833.817 4926.954 71759.6767 4729.2856 5445.0188 2881.4966 11693.0365 15408.353 14335.9283 12344.9789 7478.3017 9329.4808 6156.7345 2862.6248 3833.3186 8904.9497 320010372 ppx Phosphorus Polyphosphate degradation NA Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 6597.1861 42784.5345 4628.4763 11057.6702 150395.5656 4295.7492 15012.8376 7953.3274 7953.3274 4325.0296 11970.4602 4214.965 3361.5577 4103.6627 3835.9773 24694.3346 4741.0434 9034.4111 5745.3792 5089.9767 255938524 rgh Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 9560.7426 9720.2983 13821.2514 5622.28215 11972.3298 7356.5585 15564.3025 19105.9188 12565.6968 299688.7566 46397.4866 17415.2535 40208.678 9997.53745 9997.53745 5590.79935 36011.3394 19596.4135 16124.6288 11970.79835 9277.309 12414.7414 8623.4867 28786.8773 41233.0308 8145.1571 12398.4734 16806.737 5636.7695 15292.5377 159181496 ppx Phosphorus Polyphosphate degradation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4269.9288 6163.1696 175092.3939 2724.8556 2482.5933 7417.7145 10465.7329 5340.3609 90108.2767 8069.045 18200.4987 7403.3464 12095.333 12095.333 4079.6654 10387.701 5000.8637 5262.6728 32860.4248 4679.8515 4581.4093 5410.3498 5381.3509 11984.8541 14980.0158 15597.3901 5309.2794 11896.4803 4556.3127 25473.3523 7709.999 333023696 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 667809.9883 23992.1902 5447.3045 19038.9879 7246.0293 6361.6564 12304.1734 10530.3054 8225.7782 54202.2653 42071.9553 270375.5694 20754.5313 17976.2472 42832.7858 18743.0752 18743.0752 18229.365 148318.9816 60612.4069 22019.6635 43805.2872 32669.278 16344.3923 13793.7393 15785.6299 13963.6083 84259.379 42399.955 24688.0107 15592.2965 15966.2184 27780.0413 21416.3882 161481.7211 83308655 amoa Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 6895.0474 11252.6924 30133.2629 4438.9875 4239.4575 2428.6938 5293.1853 5895.3432 4438.4336 4438.4336 8428.7266 4008.1281 8523.4195 23383.9586 7653.2 10818.2502 4410.7185 9449.361 2874.9228 14017.1182 10379.4542 5248.1626 90206686 terc Metal Homeostasis Tellurium Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 14912.0616 7525.9874 37825.0254 37925.3977 8241.5946 26546.8571 5403.0442 9645.0716 34017.9718 11554.3568 262556.4535 12531.6659 36631.4239 10440.031 14642.3683 14642.3683 33500.5256 14027.275 20971.9094 29642.9659 34433.8309 8966.8368 6682.7262 9079.7878 23059.3297 7722.4103 56833.6139 17413.2453 31940.9571 8880.5513 11125.142 23919.2266 9028.3022 11806.2241 172056894 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 4736.5091 3328.4853 4798.4338 8469.9378 5153.667 4436.0595 5116.1353 6423.1827 6423.1827 6744.018 4636.6025 22601.3306 3872.1836 13774.6662 9600.2124 2412.2061 16051.2515 3159.8867 7685.5452 7345.8364 5054.2674 3362.5648 6133.3282 4627.1418 1976.4087 4324.3213 334735418 pme Carbon Cycling Carbon degradation Pectin Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 40088.8277 13899.5314 8639.6518 25862.483 11237.1624 21904.76 15875.3471 3338.3108 10195.453 17322.117 15744.975 1665612.0788 26500.5694 39704.4088 10285.8321 12870.7329 12870.7329 7891.4862 27683.9232 17830.0936 7566.9389 13812.866 14683.4942 5838.625 16900.57 33234.8015 10415.6941 41822.8128 335453.4951 23823.7764 6962.6651 12542.2354 16678.7091 8163.4713 20434.7028 225405370 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 203972.7839 102046.8793 75980.6136 177925.8276 113337.5509 349704.9982 105380.0502 163848.0716 71085.2535 88133.6909 130750.9753 64922.6774 2523162.1535 118393.8294 110767.9618 143480.567 104260.6073 104260.6073 143967.6512 133926.3202 89110.5299 162289.007 166359.5849 194052.3457 70198.106 57358.2157 110281.2486 68034.9328 1318295.4185 126339.4059 169465.1808 235278.8188 69809.9254 106372.102 60418.7532 177373.8494 385883563 xyla Carbon Cycling Carbon degradation Hemicellulose Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 46619.4265 63590.1811 6571.5323 14829.8866 10674.6872 49363.3311 18744.2131 11261.1132 13592.1527 16628.9004 19795.0722 204019.8718 58818.6054 40652.3842 153712.3419 18562.0787 18562.0787 5690.4888 62739.5877 16774.9664 7856.2116 21950.4957 184236.2427 17619.113 49730.3262 18158.9319 25647.7884 55135.437 33034.0664 23303.6687 8463.5018 24000.0477 20950.1404 7195.8374 17297.899 281298851 amyA Carbon Cycling Carbon degradation Starch Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 8131.0582 42537.1086 102962.7722 8278.338 7345.4321 11889.0381 7571.4401 48198.8248 173433.6359 10503.3529 21592.9522 30211.33 14394.2106 14394.2106 9239.0267 14275.0935 8340.8425 7823.6332 12115.157 4219.7164 4560.9971 15966.5352 11969.6137 40670.4159 34142.151 34039.1352 20310.9791 6399.9007 13935.5093 26586.973 144296.3927 16220.8337 87281165 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 316083.1459 102261.313 31031.4947 54384.914 11043.3638 75725.5535 68570.0909 51339.806 36655.4258 141258.8474 43239.8978 778974.8976 40669.2542 58793.8147 137281.0437 42767.819 42767.819 28062.3789 70712.1531 53266.7566 96779.5044 83368.0887 40530.515 35484.7871 38650.4813 53574.1176 71165.9577 109426.1057 130093.8438 54492.4755 16374.7804 48396.2747 53402.0153 62226.4732 73215.0484 398065936 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium sp. CF080 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9863.8729 10865.3946 9395.1283 5783.4347 3753.7884 6080.6666 8144.1639 6338.2179 381929.7465 8742.0186 13138.3046 5723.6425 5622.7141 5622.7141 6281.8773 12603.0318 13010.3176 14898.8045 9132.3894 12334.2732 3639.3984 5534.2558 10931.3667 5342.112 21740.1959 6428.5146 12075.5647 4495.3997 5498.6227 8362.8185 5349.1794 12928.5441 301111093 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 11726.0032 10810.6271 7893.3215 3161.3055 5731.8992 39099.1912 6952.6205 16262.1768 6273.9738 130949.5433 11661.1166 9446.2228 7389.2911 6251.4288 6251.4288 4261.1424 58832.6314 8207.0124 10117.6518 21923.5523 8943.4806 8130.2305 9826.8808 9245.1838 9128.3325 23079.1613 9420.3324 18913.2413 4740.1555 9802.8829 51707.6526 41060.9016 8734.2405 114339666 arsc Metal Homeostasis Arsenic Detoxification Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 13506.5154 5301.9159 26129.6632 53295.9377 55646.4179 8754.9217 33342.6888 3948.3705 13333.1384 18380.6078 13116.0422 312653.3898 41981.7107 28333.6966 28924.2033 195134.6256 195134.6256 10299.4732 26530.9063 19791.1066 9625.6687 9124.382 18361.3594 6651.9618 11351.1976 42488.3519 35020.1381 49106.1417 37791.6917 32859.0779 11971.3389 17717.1785 7988.7758 7002.7974 20881.8058 334261838 narg Nitrogen Denitrification NA uncultured organism 21818.3589 12337.4607 4436.3038 4200.0913 6451.4803 2944.2152 6964.9931 9557.0158 9199.7989 287860.66 9753.1961 9176.6718 5987.8342 12125.821 12125.821 12511.2058 13786.575 11275.262 10534.4996 15839.4271 20654.6087 7447.6122 6185.8146 10667.4674 4060.4308 36548.6297 15060.3193 13262.2557 3670.1271 10498.8632 9260.9122 7423.9172 9419.0136 332180438 amyA Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 47818.4181 6393.2735 5171.6047 7933.6271 12172.4007 31616.6221 18030.9867 27485.5677 13527.9618 296698.8584 10663.8137 101383.0885 19906.4009 58363.5698 58363.5698 9112.7523 54728.8166 64768.5417 15837.5175 26853.9237 30039.4774 9702.7395 18400.9835 17826.0618 10240.1748 43845.7304 23948.2192 36769.6741 10403.0433 31363.567 36628.5805 50721.0784 45121.5685 359250332 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 11327.7824 23079.8011 4982.4119 45932.3036 5538.7168 5505.5959 53768.0358 9073.7276 148181.2111 8037.4592 7125.7244 9834.0022 6595.7604 6595.7604 4039.2981 11341.5486 6757.2883 5285.5741 9746.317 20072.0188 7735.4132 10001.0683 7557.4133 7052.7898 25541.6687 13033.2652 12025.067 4686.0368 9579.5016 11731.6741 6548.61 12758.1542 56798857 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12118.1552 7444.431 10338.3219 15809.9662 15870.9384 10008.0354 6111.8206 12603.168 19115.7233 5946.8809 210836.8358 14545.3847 11989.1222 5273.4724 5098.6173 5098.6173 8063.9165 17961.8116 14359.3465 10906.9182 13429.1213 12968.5685 5184.9495 6036.0908 18018.9853 7651.315 26468.5823 16855.4653 16471.9017 8280.346 14327.2059 8744.3667 8650.9907 25458.8288 339883593 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 18911.1373 32883.744 12101.2623 19569.0998 6039.7869 29955.8164 32505.7396 8726.4305 13009.2734 64973.0704 38544.8503 492695.0714 17232.9661 121392.3764 57570.3521 22193.0979 22193.0979 14749.2261 14074.7748 12302.7977 37031.5087 27325.824 20067.7947 17897.1202 28268.4998 27584.2673 70173.9138 49945.3644 31300.611 71395.2076 11803.3291 23842.5963 65235.5668 19850.0113 8710.5654 323376220 terc Metal Homeostasis Tellurium Detoxification Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 12704.7509 13599.2724 25489.6049 13784.3418 15400.7918 24289.6725 47444.2577 6434.7371 16519.6561 22768.1645 9126.8689 458522.4519 23163.9446 26427.2583 19666.2115 16371.2511 16371.2511 15379.9218 34142.7465 25068.9548 18934.1565 16896.3054 33113.4545 10877.5185 17091.3856 41372.7798 26742.636 49003.1504 47121.6147 29482.898 16992.4427 15425.7023 35974.3106 12483.3316 28827.2232 367052655 glx Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 14502.574 57558.0551 6459.0683 12216.3392 2097.9942 14636.7853 8111.1462 4615.4317 8428.8547 2571.9256 2571.9256 12860.4922 3022.0034 13330.4775 402491990 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhizobium sp. CCGE 510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 7461.9008 11994.6382 9597.6467 184439.0625 4368.2259 7829.3709 2923.7277 218437.2254 8970.0538 43193.506 2367.5914 2367.5914 5222.0835 12851.6765 4436.5501 5327.5596 4373.0758 4451.7758 5242.4593 3598.146 7400.7605 7585.8719 18126.4277 11651.888 4116.1346 9044.8197 69739.9378 4895.5077 5423.1391 21388681 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. YK2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8255.3945 25520.4364 17486.2633 22848.0252 4323.6865 2384.286 4348.1162 4165.89 4047.3085 64662.6925 4557.6123 3304.4385 4535.2875 4535.2875 3370.9289 7598.7684 4282.9218 7310.3278 5481.2034 22757.9587 3156.0668 2948.4476 10202.7871 10703.4772 11227.9808 19615.755 7355.7709 8250.5399 5640.5439 9611.4586 5250.0933 8034.7658 326949859 merb Metal Homeostasis Mercury Detoxification Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 24332.7978 19169.4849 61838.4261 12240.0128 102592.8268 25225.1632 13292.8588 65610.0979 22950.0222 16434.6102 17323.9036 27156.1182 335951.6832 20546.7189 27714.69 54444.476 55637.1666 55637.1666 10780.3245 43595.6042 29426.9458 14681.3198 21065.3255 11340.945 63176.4093 22440.8526 40095.1743 21788.6221 61590.5664 35273.9826 33642.9834 15946.7278 15953.0077 34951.9696 36218.7998 39449.6595 62990090 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5633.4673 1016678.4151 289961.0307 9386.8581 7899.3363 4564.9609 3027.6019 19351.1953 3383.3892 9680.2163 3095.1353 356882580 endoglucanase Carbon Cycling Carbon degradation Cellulose Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 9461.8103 9986.2553 11558.3275 4206.4432 5005.8257 5005.8257 3396.164 7942.4255 4930.2168 6039.68 5394.0189 5032.6168 2541.2453 3165.1748 10066.2044 2629.3937 9659.8395 6893.4351 7196.7103 5218.8449 5166.3003 4090.9995 2703.0779 6328.9605 160917795 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 56119.8937 11627.7214 38884.9229 23675.4044 6692.1786 26362.1535 25051.616 52253.1662 43264.5508 58489.8616 35892.9965 815892.1869 61341.9768 101993.6337 58255.7586 35805.9236 35805.9236 30153.8705 77981.569 45597.9142 79011.3819 78570.4395 44885.4251 30791.6315 33360.9687 36703.2748 39093.4225 105120.4281 32723.2716 51444.4445 18544.9649 82671.7298 45734.9905 23656.8937 51116.1284 113946760 amyA Carbon Cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 58763.156 2504226.9915 720306.2988 22301.0682 22171.8012 8589.2591 72153.176 14059.065 16066.9427 31700.2744 22163.3135 21862.6032 510509.8583 39254.8929 28581.4497 27689.5232 49762.6022 49762.6022 19408.2827 31692.6242 20591.1455 34114.2707 25781.3098 45372.7218 12036.2069 19554.9838 55377.2986 15114.8043 46137.3879 24651.1563 43188.7116 12329.7383 29812.0034 35430.2436 15008.1471 190903.1684 372000037 mer Metal Homeostasis Mercury Detoxification Rhodococcus sp. Mel superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4939.8341 34180.5414 6456.1192 14689.1961 93574.8396 5076.1321 14439.2082 6877.2499 87653.0359 21835.9835 5452.9904 32900.9284 43513.4769 43513.4769 3439.2192 16905.6473 6847.3738 4713.4839 31259.926 8249.6822 7287.4651 12777.0682 15124.8881 18895.8632 11432.3243 23296.5321 12363.8282 8835.8978 22141.3691 2227.5487 6939.5568 297627145 arsc Metal Homeostasis Arsenic Detoxification Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 193481.6252 140639.1514 116732.1061 311502.7832 286535.6056 34222.5414 287018.1441 105858.6155 105672.5242 124028.3138 114447.1548 137434.3873 1767823.3881 116281.9746 123559.8687 108918.0866 96822.1688 96822.1688 56494.5824 117867.8944 81368.453 157044.2963 110225.8761 91671.5538 73127.9034 74563.3458 98639.3103 132045.4984 217410.3933 92827.5624 156186.4579 62894.9677 77342.6045 132970.0837 121060.4623 111412.5643 332531181 tktA Carbon Cycling Carbon fixation Calvin cycle Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 11502.8486 14623.9943 16349.5855 13819.6961 22457.7743 4163.2218 2103.4502 10912.4466 12788.1692 24850.9706 115772.2655 30976.1883 7967.708 43287.3705 19162.0557 19162.0557 13506.264 17916.7136 6282.0689 16105.2886 26312.2335 4782.1064 6264.9351 12710.7272 16471.4065 8167.5913 25729.7765 16204.9633 17238.8991 13223.9865 7053.8605 8372.7935 7878.1855 29811.0084 85697819 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 56396.0768 46890.2219 52612.7892 41207.6267 10658.8107 68784.7685 69852.3264 28787.2836 43940.965 84832.0084 33454.7931 605149.6028 47575.9178 47065.3506 107600.8707 136743.4165 136743.4165 27445.487 53545.4363 52259.5108 77487.4679 56305.1499 49843.608 30981.1573 60276.0128 43083.8251 68199.7964 122229.1036 63523.9084 59696.2913 45661.3928 54259.6568 50326.7016 59475.6218 66360.8534 95111342 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 13646.2621 39372.2902 9524.1897 1370550.4655 31659.1722 5131.0472 8030.4318 97004.3524 25609.6266 18110.3901 52337.0861 260311.8096 30959.0585 36734.7838 15905.0524 113984.5754 113984.5754 8075.2896 20392.9236 12850.0314 15540.0215 13098.6316 19693.0628 5261.5073 50846.8976 46049.1857 12536.3622 1061181.079 42270.6907 34163.292 10305.4659 30319.5798 16535.3734 86937.2637 13633.2088 302681527 amyA Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 43637.1865 12287.6453 20176.1733 31054.8613 31444.6377 54237.9783 16281.3423 39148.3555 31992.6435 110214.8516 477737.4259 34597.6294 28030.8634 49361.8081 14400.9286 14400.9286 10792.1227 27956.4978 35264.6325 216407.0351 43104.8271 42715.3851 35229.0335 49162.0606 25343.9907 44809.1362 108840.6309 61045.805 56997.7485 13435.9692 35145.6888 21359.8343 22665.3305 234105.3942 116222524 amyA Carbon Cycling Carbon degradation Starch Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 20283.0654 9034.062 4622.6469 4309.396 13172.2456 3765.1088 11227.88 13039.0901 4586.9195 4586.9195 4911.9771 20206.2248 7132.9564 9634.8948 13640.3968 21401.867 11960.0508 5244.9971 18282.0372 8006.3736 27153.5994 16140.9252 14439.2339 4851.7656 71332.2757 10879.0972 66584.8943 9089.2912 289504110 amyA Carbon Cycling Carbon degradation Starch Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 12742.7701 8602.8219 3955.444 5631.4703 7940.9554 8416.7692 13794.3142 16238.9231 7080.4382 146687.9767 7939.9822 7236.2695 12233.6508 5846.8022 5846.8022 6758.4135 17624.8871 9089.9514 6554.869 11133.6049 6056.7089 6714.9158 12938.382 7434.7958 6295.6652 23753.971 15446.5487 60092.707 8906.2605 9603.028 11213.2508 10100.2194 20946.0899 310286991 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium bifidum S17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 10776.082 5626.7608 10664.0972 6935.9272 4916.8373 8811.4079 6902.7248 7063.1705 10367.2628 10473.4875 5739.3288 159188.5241 11584.881 8556.2302 6359.143 3413.2615 3413.2615 7502.1915 17458.6222 12848.3394 8434.5848 17846.0145 26810.0594 5979.3875 6234.3077 16751.3488 6832.0452 19351.1332 7940.054 12443.7824 6659.4596 7023.2675 8000.8602 7354.029 13850.6048 161385890 ppx Phosphorus Polyphosphate degradation NA Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 427178.2894 35631.8799 36768.7915 17005.8655 11476.3491 10507.5862 3986.1227 11345.0964 11582.3675 7269.649 243206.2598 8435.5173 11098.6259 18822.2159 5899.0544 5899.0544 31283.4815 28462.6263 16911.9537 27960.0691 14675.3215 25182.948 9504.313 6730.6686 13615.7774 7363.0356 31411.0263 24357.1102 14037.4412 7531.0711 10534.3376 10512.3814 8379.2031 25640.3099 222099746 pula Carbon Cycling Carbon degradation Starch Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 88439.8724 6651.7263 11434.1056 16043.4435 5178.2381 6408.1077 6624.4509 15554.6959 7541.3295 10568.7076 5002.0534 241593.7251 8396.252 7269.0779 6094.6742 6574.4331 6574.4331 6599.6699 16730.269 10490.156 111933.1439 8962.4417 14387.1336 4726.0031 7703.1896 12739.7899 7084.9803 18780.7673 12402.6149 14983.5231 5427.7746 7191.603 6669.7299 4975.0908 19316.29 332042103 urec Nitrogen Ammonification NA Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 7850.1055 7896.5205 9455.8809 9883.7992 4138.0165 8025.8532 3673.099 6634.4436 40498.4749 8744.169 114631.5503 4537.0118 8076.3105 4198.2096 4198.2096 183120.1643 15405.8709 266281.9535 23391.4961 10177.7946 8643.042 4311.7378 8925.8385 12379.0668 9822.1502 49783.1695 728895.2329 20441.151 7265.3773 7079.3842 8547.7133 3723.1069 359578.244 229019935 pula Carbon Cycling Carbon degradation Starch Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 4695.459 3829.4055 3654.9929 7868.4987 5927.9249 2654.7678 84445.7826 4878.8732 7796.5104 2665.6282 2665.6282 5962.327 7781.1602 5680.3733 5269.3747 6441.6612 5952.5258 3171.1963 4339.3261 10025.6348 3298.3881 13272.5146 9837.2764 3034.0854 4185.8884 4881.1631 2960.4258 8737.535 291303397 phytase Phosphorus Phytic acid hydrolysis NA Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 28931.627 13999.7167 162044.0844 57770.8701 10590.139 18563.3234 17797.3365 56784.3868 12928.4696 7388.9965 16469.3951 15158.7373 14224.0211 14758.3751 14758.3751 15819.7384 72331.003 20329.335 36635.2545 27055.9797 68076.6533 25581.1915 44609.857 22628.8958 18549.9273 76213.4154 21820.5775 29963.0016 10535.1664 20018.7321 22306.1687 18134.2127 40155.4364 86749031 vana Carbon Cycling Carbon degradation Vanillin/Lignin Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9757.6306 12689.454 18481.8845 5173.1542 8911.0083 3876.0056 7970.0312 9419.435 7223.0272 61421.0463 3636.5264 11093.8873 16973.1328 3450.5898 7742.9166 3728.5279 6793.3116 4061.7298 5707.686 5584.6198 2084.0233 5885.253 4540.1986 5109.3793 2989.9636 6717.2487 262274108 urec Nitrogen Ammonification NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 5000.5863 9036.1922 10651.1509 3779.1352 3441.9277 2841.3798 6113.8605 9837.3428 2307.5428 222925.858 12108.8079 7743.5299 5215.4401 3609.0528 3609.0528 5346.5887 13537.7504 6268.4842 6440.4881 11133.1417 8699.9806 3038.5164 4014.7623 8507.9174 3905.3897 13714.9468 6947.684 12508.3895 2790.764 3344.6257 4957.0712 3340.5455 9673.8833 3820518 phdci Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 154518.6635 94572.162 47010.2754 49616.6495 24876.1818 170777.0617 130390.1961 81240.7741 38943.5332 59040.0788 85432.5795 1608521.2145 122656.8487 104471.9431 142023.407 123240.582 123240.582 72011.3255 157893.9912 54337.5079 185987.105 263060.7887 100883.829 247769.0769 69561.9079 79880.2962 85045.4613 200639.8108 65146.713 104881.4237 90141.4084 86830.6284 125238.8914 65543.2823 137712.4984 365825509 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 13254.1297 7554.8489 11502.8504 43106.1305 5248.3575 6066.9279 3038.287 6664.5702 4448.4595 16332.6254 147897.734 22752.8428 7046.3059 20051.2162 10216.1568 10216.1568 4160.5009 9734.5702 5839.5376 38299.9201 9953.0225 4816.9827 9472.1544 10818.087 3887.8145 17495.8181 9479.7631 12052.8016 3300.0146 10612.9681 6692.2956 4193.1933 5658.2674 34017124 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5161.2683 18682.4131 2249.1876 2411.5737 31260.6064 6679.2988 5332.0734 7667.7326 7189.2227 3742.529 3742.529 15857.1428 6699.6789 4435.6047 12165.0537 5106.9908 4457.6549 4219.2875 15194.7622 8101.4807 6749.2187 4952.9868 8388.3599 5838.6235 5779.6358 90954599 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8491.8262 20055.1055 7813.7475 34498.4216 2810.9029 7321.4485 9452.4286 5536.4519 13540.9598 6998.2256 96631.1283 9556.4517 11268.0573 19522.0649 5625.5382 5625.5382 7890.5863 22462.3978 16603.0208 10231.7124 12909.8951 11498.4947 6943.4325 7266.2781 14699.5384 13876.4268 22730.758 9794.9754 18092.5171 5635.0325 16642.3416 18178.1798 8216.8103 14788.1729 332377362 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 59597.9092 3046.7209 8984.3261 4416.7124 4887.2501 7636.0434 10478.7983 89240.1159 3588.9769 4548.8665 15852.5173 15852.5173 4421.1146 7469.1993 3922.0228 11718.8825 9926.0071 7435.9862 9388.1225 9421.0058 2878.9017 4722.6215 7921.896 2524.0557 4249.5157 6753.36 3817.5703 384371764 urec Nitrogen Ammonification NA uncultured bacterium superkingdom:Bacteria; 14718.9308 1417871.8451 9028.7552 37420.408 33347.4511 14651.36 21685.0903 107119.1988 2527.1 13695.0205 19370.3612 10964.0311 181945.2605 18672.1896 23195.0583 11649.6948 9102.6201 9102.6201 9019.1917 42847.266 10795.2503 21628.6783 9161.4189 13055.7412 5705.1704 10203.4176 15870.9551 122435.1336 32290.116 21203.8315 13222.3124 7144.3534 21034.6632 8940.1511 24812.7926 9425.2061 23013908 tktA Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 1033472.0653 19427.094 36779.2929 108568.6116 45624.0854 13133.9261 28524.476 88307.8737 59204.5653 85436.5153 32636.3925 82615.0419 164578.4274 166969.0774 65719.0865 65719.0865 122142.3006 52513.2676 110966.8575 107133.5826 41965.4056 46262.8655 58383.4859 148966.8342 31182.4383 76122.7245 52573.7782 64599.725 116623106 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7756.9748 8555.072 18325.4526 19001.1553 2960.2261 25431.0813 22868.0824 10134.8667 15354.9199 16530.6771 210082.2808 16805.4262 16058.3247 24968.9774 23217.3663 23217.3663 9458.0487 14640.0705 12251.9 6726.1823 44611.3082 4821.0347 3942.6726 7170.8795 25464.246 13148.9548 20161.9923 10436.2127 14124.9002 7527.9949 4977.4539 10993.6221 5116.2057 16273.9673 371721050 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 9628.5532 9069.2657 4169.9802 73878.819 2699.7823 2699.7823 6344.8774 6442.9586 7196.3321 9488.7439 6250.3082 9299.5392 3124.2785 3263.0548 12276.8619 31535.5589 8016.0143 14024312 glucoamylase Carbon Cycling Carbon degradation Starch Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 13679.1644 13125.4778 13650.4141 7741.5638 3312.5184 2572.0553 5308.6443 4055.288 4657.5928 117974.6751 7118.2268 7309.1866 11274.9424 4088.5882 4088.5882 10836.5923 8985.1518 7378.4585 5423.5323 46093.9133 11473.0708 10750.0831 9596.2794 9539.5052 3027.3854 17302.0242 11810.7744 11439.4488 4436.7421 5005.9394 10186.7672 6139.6587 17928.6549 220691861 rgl Carbon Cycling Carbon degradation Pectin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 33688.6137 16745.1126 17638.9659 58697.2455 25697.1412 5882.0499 15616.2686 35587.2517 200415.2829 22015.6636 30785.3348 15018.7232 449981.4469 33294.1839 23365.5156 26946.7103 42808.6113 42808.6113 19364.1747 38190.5019 42869.7388 28825.2616 32362.2447 30917.5998 11942.0292 12149.6359 28546.0377 11582.8675 39471.387 32287.59 32200.6671 22368.4486 15378.5139 33848.6193 14641.0938 35081.1632 197710679 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 16360.7474 7513.8695 17288.6849 8220.9688 6798.0314 19818.2729 9209.1305 9342.3376 16653.0793 53328.6671 267002.191 15498.3776 6329.5174 22915.6675 37173.0898 37173.0898 22499.1737 52229.6388 11007.7228 10882.2484 43480.3505 10035.2217 54534.6839 18057.4302 20538.1659 28021.8951 44401.1713 51438.6763 91185.9862 7086.1897 20554.4074 27683.0947 27184.4234 57310.7977 325539859 catb Organic Remediation Aromatics BTEX and related aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 53613.6459 36279.1052 13004.5005 16560.4111 20619.9686 24699.9077 21266.4508 21579.7593 22918.6921 19376.0051 648416.7137 22950.1122 18030.7733 19801.7032 30820.823 30820.823 21982.1978 35047.0888 27916.1967 35184.4584 35428.443 54538.9325 12238.8239 28645.9287 41765.5643 27196.531 55739.9592 18359.1671 56821.6472 14951.584 27215.95 23970.7744 28347.4839 29211.0718 399540125 linb Organic Remediation Pesticides related compound NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 86365.1134 125580.2968 54839.8069 32905.5932 27729.6084 334823.8606 43357.3876 46377.5054 39980.123 43626.9205 162682.9541 44371.3129 702946.0723 52370.6693 63117.9853 176228.2074 39851.5646 39851.5646 50553.1441 101190.1237 57355.613 181312.1184 149011.308 435750.5544 59685.5433 55816.1845 76036.7922 57791.797 95525.9958 72775.7468 81623.2291 59831.9442 58593.095 90217.2899 61534.4204 87015.5536 88180631 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 604544.1887 12069.2734 11919.2357 32409.9047 7372.1504 6007.2895 25818.961 2820.2474 9497.6337 15182.1172 6737.948 254130.3703 11606.1329 22925.7645 20053.1319 32187.8902 32187.8902 8539.848 38453.046 22309.7671 10095.3669 46603.07 11236.8329 4355.0877 12230.0156 24076.3027 8455.0588 26930.155 16479.8556 22727.4228 7088.7708 10098.349 18112.6814 7186.4484 9017.5863 219946927 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 30890.0428 13775.9637 24179.609 13155.6132 25935.9128 7951.219 15561.8841 5966.7224 17980.2518 18860.1699 45507.3475 429499.7227 16008.4767 17075.2058 14955.2624 11620.1386 11620.1386 46324.3641 79808.4668 12029.122 11527.8809 31608.8753 18255.229 6508.6235 10922.5524 22252.9772 7351.0595 344983.5015 38342.9382 30158.6864 7992.5082 56965.7665 20213.0091 16366.1531 318347.7335 302415817 urec Nitrogen Ammonification NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 30114.678 31493.077 4517.9656 23758.2616 6330.9847 8818.4265 9014.6517 18901.882 10664.4259 23815.8206 9674.027 189830.4921 26704.1917 16478.7074 13303.5638 11571.5696 11571.5696 7660.1754 21359.1564 11134.8541 775187.8466 45163.6648 122476.0003 10548.6526 8654.2675 18238.1952 8019.2628 37773.973 23761.3195 15268.58 9965.6567 15849.0094 10361.082 10058.6022 512713.5194 153815239 amyA Carbon Cycling Carbon degradation Starch Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 11194.4308 17112.4315 4570.7457 11774.3602 10674.0589 3154.1047 22011.7834 3447.2668 3447.2668 10448.5433 10447.266 6747.6998 7380.2258 3291.4819 27443.5463 3606.5485 5213.5559 1734.5623 5389.6531 7451.1269 1993.1995 184200841 terc Metal Homeostasis Tellurium Detoxification Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 20297.0231 3451.0141 8746.0433 29511.7052 3182.0749 6976.2127 4752.7046 4109328.2942 16196.6939 21492.3204 21054.8046 5000.4909 5000.4909 8014.9553 34283.7399 3853.6412 7578.3079 6988.5447 9029.2173 8982.4402 5808.7279 3759.4739 32501.5972 80647.7362 9821.9535 3669.6146 4654.038 9032.459 4143.5705 193212846 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 3762.0252 30396.3973 6016.4745 2083.9609 5605.0044 4315.8962 56983.3749 3928.0176 5257.4501 3829.75 7982.7018 5357.4327 5245.7613 6462.8495 8713.2765 4362.2316 2858.718 6384.5342 3403.2855 10783.9361 5857.4045 3312.1946 4842.7029 4159.8163 2472.2584 9354.0073 170690758 catechol Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 6438.7889 4393.3659 306044.173 2889.3649 5624.5566 6434.1762 3286.358 263300.476 19947.2691 7152.1359 3166.5095 3166.5095 3214.8153 13061.6232 5186.2612 7665.7827 7530.7968 4460.235 9441.5421 6138.2226 5588.6566 14330.9779 7542.6889 7272.9571 3258.6723 6068.4972 4090.4745 2731.6097 9244.5104 87285396 amyA Carbon Cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 5929.1973 76363.4369 4725.9447 3428.4351 3903.8897 13145.8278 4009.1738 5056.7068 5775.3734 279844.0073 5108.8522 3915.4128 7653.2466 8799.5958 8799.5958 4267.3066 14816.9798 4067.3494 5323.1274 5708.5005 22283.3966 6909.0372 3532.1831 6040.4037 14575.3238 11211.9382 2955.2217 7776.7482 3816.9579 3870.0908 12006.0339 303315089 endochitinase Carbon Cycling Carbon degradation Chitin Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 11893.8619 11493.1917 5057.63 3998.345 3361.8329 9630.3211 3348.1818 179214.8439 5056.3505 17662.3068 7698.0358 4226.7858 4226.7858 3079.1271 9489.8886 4148.8009 6110.7036 3987.0602 2858.5548 7721.1986 7849.298 3214.8529 7946.6771 7016.0304 33013.3462 2889.8304 5247.2581 6234.6072 2703.6443 5645.6152 84392203 atzb Organic Remediation Herbicides related compound NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 294682.089 14386.2213 453290.6033 126922.2102 555157.6961 636880.775 213698.1226 403070.594 226549.9308 334362.3146 194152.4666 211347.604 7610248.2693 217856.6383 360211.4941 448909.1889 292511.8637 292511.8637 243644.9782 460565.0459 220696.8534 224517.1639 301527.8958 356982.9471 203000.7023 191948.5468 294767.0266 297677.1778 1065700.4784 217277.0727 241696.0461 177902.0146 352808.1162 304880.2457 186143.734 418540.2943 296116847 nitrilase Organic Remediation Aromatics Other aromatics Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 13953.6082 5287.4753 17417.2673 5055.2913 3126.2542 4965.2081 6417.6311 22388.9698 5793.4607 97103.0464 59280.3425 12479.6095 8518.6868 7173.5128 7173.5128 3588.4936 8737.4339 7079.66 9584.5554 6592.5352 7501.8778 4938.9826 4436.9989 12310.491 7468.3379 40110.3929 9105.7574 40089.3834 2906.1509 8653.3224 50952.6457 12228.0218 5700.5422 374416893 cda Carbon Cycling Carbon degradation Starch Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 5205.9175 5623.4984 80886.2226 17382.8978 7613.9953 5165.4473 4704.7243 3962.2515 4765.768 230901.877 8759.5382 10283.2543 18674.2872 13337.8015 13337.8015 8401.6047 10335.8431 10672.3783 4706.0547 8008.3737 3256.919 11534.7693 15789.748 6389.6596 15563.6691 15427.996 21053.2655 8452.7417 5393.5795 9617.4303 6128.03 8613.1251 407000183 bphb Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 6090.7714 18153.7583 26773.6988 10117.586 2912.2224 4370.4712 3716.1792 5155.7589 4435.3369 90579.9906 14541.0685 7439.9902 9085.8808 5676.3966 5676.3966 5627.6987 13381.881 6129.6372 4473.9381 4056.258 3445.4928 11344.9183 2442.7977 12694.549 7832.4013 9448.0399 4331.6067 5047.2627 4532.1496 4029.1283 7783.9961 184199807 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8274.0313 324637.8169 17875.7118 18339.7641 16642.4776 3845.9239 64798.518 5992.5323 8298.8423 6404.3355 6438.7408 6438.7408 4163.0187 10846.3304 6910.2032 12371.427 12636.7403 5596.0371 3448.7163 6557.7345 11049.3878 3910.564 26916.3669 22311.7146 13588.3545 12583.3182 24103.5837 5680.8274 7817.3682 13454.9147 90903267 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 15844.5555 24997.767 5781.0545 17378.9591 4808.5951 5340.4407 10995.8768 34072.089 31935.6976 19701.674 118773.1754 27842.9861 14394.0814 12272.6283 8211.2457 8211.2457 9411.032 23342.0801 6980.3367 22590.3257 40829.1836 23626.4517 9653.3552 14547.2231 27687.2762 12518.5454 27177.2116 56651.7547 18091.257 20795.6862 14570.3358 13831.0809 6274.251 20953.8905 229611249 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18528.3718 9115.0896 18520.1846 29068.4017 7514.974 16369.0514 12794.7595 10465.2132 13923.1389 17658.2476 9960.9071 376932.8511 23382.8731 14994.8758 14600.7308 8702.4156 8702.4156 11275.7677 16425.6656 14690.7938 16070.9298 20300.9229 22968.1163 8903.2234 7433.0357 19719.3403 6877.4291 32438.1314 17818.4593 21641.5866 7850.0434 8898.5879 11228.0413 11178.0662 27995.6607 408483094 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. R81 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8475.0681 9656.3654 4280.588 9590.889 4650.5493 5351.2988 2685.7905 6114.7418 10552.8946 3909.4525 114261.4101 7775.5807 5304.2648 6249.5652 6249.5652 4498.4971 23482.9705 12705.7912 7902.1049 37743.3656 6375.4066 3380.2148 3710.6419 9399.4842 4352.9917 15511.3667 8658.9058 9513.8278 3166.1966 5451.9987 5451.1291 15915.3912 10009.3407 220683606 amyA Carbon Cycling Carbon degradation Starch Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9505.0389 5202.6797 21543.4158 8263.6218 3206.9697 3010.5158 7821.2425 2600.8561 109021.7101 5308.0693 14664.6781 9649.9501 8771.4004 8771.4004 10957.8192 6429.0314 4469.6711 4607.7015 4773.6807 2608.1819 4272.5354 12589.8699 9143.6767 6303.0718 12788.768 2742.4576 4290.3685 4390.1655 13244.8485 27377801 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 68389.3049 139276.754 10884.3107 151279.9684 44998.6588 55650.2346 99782.2561 43204.9332 60625.9529 136955.6925 96639.314 1843015.623 288795.7251 71742.0023 96035.72 125645.38 125645.38 28838.1412 76710.6703 64223.6264 24403.8843 127748.3689 129337.3757 36939.1711 51505.9228 77250.8178 61877.7052 178087.4427 106092.9111 98607.3269 26002.3505 40916.8649 55193.1657 55007.9421 114352.1731 375011841 ppx Phosphorus Polyphosphate degradation NA Owenweeksia hongkongensis DSM 17368 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Cryomorphaceae;genus:Owenweeksia;species:Owenweeksia hongkongensis; 9092.5993 5793.2182 8450.0039 6810.6144 5474.6803 4045.9148 8365.4662 9718.6652 3389.7693 152651.7476 9062.167 7816.4352 4407.7165 4215.1399 4215.1399 5429.3565 16748.8128 10884.0563 9480.2733 8837.5212 12069.3971 4806.76 4505.5572 12467.8097 4460.6937 21797.1385 10617.8933 11033.7319 4727.8029 5919.7269 5713.4507 4921.0919 11922.5713 160917486 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10696.149 10621.4139 7056.2224 13632.522 7624.5955 6978.219 4410.7199 8153.9721 8774.6134 4619.8308 226124.246 12358.9033 10828.2367 4783.808 4440.4643 4440.4643 6661.1051 15124.9943 9670.6198 11942.466 12546.9783 17260.6505 6251.1131 5552.8055 14774.3879 5502.9438 17355.4428 5307.4735 12121.4026 5483.7783 6440.2568 7603.5256 7698.888 13012.57 384066511 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 4233.5762 64807.2662 6344.1679 4940.0233 14006.9071 5797.8878 5797.8878 4266.3915 26412.4355 12664.7896 3350.0187 4670.262 6712.7717 1770.9203 3706.903 2604.06 336100294 PRK Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 10727.7037 5255.7158 2171.1144 4579.7261 14237.2345 2861.6918 149009.8277 4995.4395 12775.1821 12775.1821 9395.8553 8290.1081 6196.381 15087.5023 8798.1866 3971.3887 3923.7056 8876.144 8298.9047 19868.678 12267.5155 9608.1773 4932.2617 5656.0739 8432.8101 4496.9234 94217.8683 295676523 arylest Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 17036.6274 11209.2668 7569.4604 8333.9923 36665.9866 14386.9004 11986.4399 6074.0828 8900.2721 16426.3162 8812.4751 152552.6392 11439.2155 12286.8558 9108.5238 13217.4958 13217.4958 6028.8164 19398.9801 22771.926 7780.4761 8485.7083 14176.797 8215.6551 7357.6144 13301.765 281440.873 36541.3928 7973.8222 24555.3248 7385.9749 12265.5244 19982.5234 9515.4334 8399.8063 297157576 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 85456.1202 40304.2527 16049.2252 39819.314 5223.9956 36074.9451 37628.1881 141272.3018 45494.0451 37370.4671 42144.0436 1479485.2149 41300.3312 141936.493 33869.9158 42772.0627 42772.0627 44900.8069 89764.5086 45087.8631 68708.719 186976.479 59811.2366 41292.84 30291.7765 39869.67 51449.3346 95304.7862 82437.9895 106273.7681 41870.3988 50082.1298 60488.0793 28861.3001 124640.1664 353196786 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 6559.7761 2830.6565 4114.8172 2302.7916 3448.329 17848.2214 17848.2214 6548.9018 4898.4053 13852.453 3091.1735 5546.6737 5447.0037 83593735 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 6055.2881 15575.8348 4815.4614 4411.6308 2513.3356 6081.4762 2319.8226 9417.2278 6002.2103 160917833 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9623.6834 5477.117 8578.6674 9882.7235 5798.1801 7243.2523 10160.4744 10321.3375 7525.1871 178931.4632 10379.921 7376.8543 5887.5396 4406.3366 4406.3366 5685.9238 19223.1723 10479.5741 7778.3209 14102.0644 16916.1663 5584.1248 5113.9981 14896.1285 6333.2808 21235.2929 11907.7187 15200.722 8208.0441 13944.7865 9383.1488 8360.5805 24271.2634 167624832 nrfa Nitrogen Dissimilatory N reduction NA Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 50200.4902 9314.2844 39172.5787 17512.6846 4386.2625 13727.7008 1958.4948 37986.8621 17279.6533 6428.4757 174646.0188 11639.0451 16626.657 18508.9206 17698.5536 17698.5536 3282.2356 9594.7055 7572.1719 12127.2387 7781.4361 8929.1464 2446.7982 21819.9347 14239.8393 4013.2791 154416.4831 14417.0677 14385.986 10397.1207 8444.7373 5307.2974 8434.8492 5223.1532 269795848 rgl Carbon Cycling Carbon degradation Pectin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 29301.1302 11975.3312 5172.0453 2069.2617 9680.5312 3468.9205 31900.142 18981.3393 11253.8773 254358.1864 48533.9907 61615.1283 16510.2176 14977.9447 14977.9447 9737.6331 49433.2731 171996.6787 11272.336 11380.3252 12434.4058 6088.3802 91566.4892 26445.0708 9397.3748 62403.2026 12062.3149 22747.2826 7122.446 10070.2483 21958.1335 3326.4578 186850.1817 344259541 arsc Metal Homeostasis Arsenic Detoxification Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 4940.1119 14238.6634 10018.1527 221004.9782 16986.4723 4480.0631 4480.0631 6355.2717 8133.4926 2544.0605 7986.9534 23305803 phenol_oxidase Carbon Cycling Carbon degradation Lignin Phaeosphaeria halima superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 20981.8543 18278.8445 12551.6242 5847.3636 11817.26545 4179.2277 10120.0521 29912.7517 8470.6425 17872.5612 12590.7266 2242910.1354 22596.6435 16102.504 14273.6588 10516.7952 10516.7952 22913.5274 37358.4931 13602.6847 19931.2245 48888.9939 14134.0607 34490.0232 14108.1799 21272.435 14643.9899 54910.2589 22197.1239 24199.4482 11882.55 17739.0831 30182.4254 19297.2102 181219.3894 77378693 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4884.3786 5780.1564 3034.0302 9089.6398 2155.8834 4782.4356 12163.1642 93063.3466 4891.1449 3785.6446 91719.604 91719.604 3381.076 9223.7133 4643.0693 11392.2456 4282.9529 2580.2949 2594.9908 5332.8702 3425.5475 12046.0509 4529.9824 8549.9804 2810.4701 5472.7974 4465.8564 5768.4718 5806.7314 118588076 PRI Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 15000.6137 7177.3066 4780.556 6459.3494 9377.0441 5283.1455 23056.374 15885.5311 9058.687 8996.2524 175980.8253 57386.0963 265376.5519 17788.9637 3146.2866 3146.2866 5684.2712 21352.6006 7824.2711 6080.0414 10770.5607 15877.3836 6296.0228 4710.5411 11983.7012 5000.9322 5590.4551 5079.7654 10501.7186 4635.6292 8326.8972 13520.0406 2918.8384 10971.8556 68535958 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 4258.9791 5480.4889 5189.0536 3138.0469 2847.3858 126013330 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 6146.5853 2461647.6665 143823.8395 12055.606 286792.3573 9750.3905 10421.21 7934.6568 133162.8974 9580.3769 9722.5821 7107.441 7269.4774 7269.4774 28433.3112 113484.4419 14007.4729 5959.3972 5861.7156 15484.6337 4775.9859 6700.5822 22532.2065 259106.7061 30934.1839 19937.4099 17754.3854 13501.0275 10897.9069 17286.8598 50618.6087 289207733 PRI Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9560.544 156062.9286 46634.1199 4778.6356 8048.2514 9530.3859 8280.0989 6948.41 10093.3158 7890.9323 169049.8981 14641.2886 9561.7132 57216.4711 40082.8036 40082.8036 6893.5756 17608.0297 19996.4558 16901.9223 21487.8701 6076.1986 25128.5318 12401.087 26278.105 23970.751 21425.0805 18697.7255 15932.84 6863.6156 11047.6688 21004.1349 9345.1164 14781.6258 71163424 linb Organic Remediation Pesticides related compound NA Xylella fastidiosa Dixon superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 54144.0857 8851.3931 58470.2929 26860.4609 16063.0363 19744.8533 74614.7174 6309.0628 17684.9522 22845.5022 24458.8651 360694.8813 27544.8303 27225.4379 24600.4018 17697.0343 17697.0343 11806.6295 38992.922 24732.3553 51479.6307 25626.8677 24391.1613 13754.1292 101985.5065 39118.1933 74633.6345 49986.1815 34250.2639 36936.8303 11436.8479 22878.4142 30863.3735 234601.0221 50895.0432 23012946 ppx Phosphorus Polyphosphate degradation NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 6422.6348 23977.9644 52940.7083 23523.6122 19266.0472 6124.9205 4661.0501 14193.821 15894.7688 128619.2391 168182.206 20229.9369 10075.1427 8850.8911 8850.8911 7303.6321 26293.7897 39519.8991 9981.6127 102059.9464 12799.6966 12446.9318 19147.4329 11387.2591 11539.1207 16711.9275 10238.5469 28315.151 4880.218 4785.5164 10083.6025 25369.0763 9887.6294 323383524 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7347.5328 2352.0405 2192.5708 2101.4646 2101.4646 30553.8698 4573.3348 1834.7987 392529354 amyA Carbon Cycling Carbon degradation Starch Carnobacterium maltaromaticum ATCC 35586 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium;species:Carnobacterium maltaromaticum; 6307.2846 3208.3972 4755.0182 58184.2774 5135.1777 4256.058 2657.7815 7424.1719 5537.0277 4942.2967 5213.2379 6520.3791 2922.9167 7687.6989 9025.8182 4601.4407 6056.9853 2237.6273 2667.4978 3762.6204 8697.7994 312961238 cysJ Sulfur Reduction NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5798.6544 3339.0331 3675.5321 4373.4939 3839.0438 3238.6606 3626.2574 6310.8039 3767.5218 2346.3702 7294.8552 2460.4888 9231.2263 5185.3958 6403.9344 2715.6861 4234.2405 3547.918 2961.7964 6048.8291 380733628 amyA Carbon Cycling Carbon degradation Starch Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 27391.6905 5687.3932 5139.6654 24453.1587 8223.7345 11813.7081 6133.9747 15862.4008 87943.2637 13024.429 216038.3204 8689.1682 11181.0259 7888.6137 6822.0183 6822.0183 7191.4608 18480.6954 9784.6764 38942.318 14832.2275 18840.4713 7410.6669 9528.5034 9544.0117 104478.3556 32850.9923 13351.5367 15002.7538 3936.6523 11089.1495 15870.1461 6584.1366 10043.0507 372284615 amyA Carbon Cycling Carbon degradation Starch Streptococcus macedonicus ACA-DC 198 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macedonicus; 16526.3393 8813.6053 17704.7608 23254.5178 80398.4385 11243.4724 15229.4516 7276.5619 15738.7198 23421.7737 8286.0205 375582.453 19541.2489 20458.0293 10903.72 7019.3494 7019.3494 13695.4449 22036.8933 16453.7777 17922.8757 32421.5879 15324.6989 9423.8093 7938.4467 18066.5449 10974.3602 9372.6812 10702.2265 25134.2488 8404.8565 8855.1769 21513.4775 7940.1811 21069.5293 291616133 rgh Carbon Cycling Carbon degradation Pectin Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 4623.8752 5267.2183 7961.7461 5602.5587 5226.8014 2141.3154 5732.2235 6242.0685 2757.1787 115678.0012 8390.7273 5441.6479 2626.0077 2626.0077 3780.5921 12598.9995 7699.2791 16708.3088 9652.4489 11740.6412 9642.5797 3190.0672 7486.9011 2993.8563 12370.5675 5971.2931 10380.4004 3308.5005 31869.861 4718.1629 4443.1504 44436.6619 87282704 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5433.5281 37590.6939 3816.901 4670.9045 17858.891 6885.7751 122798.6285 9653.7559 5154.3971 5154.3971 7378.8796 11262.3455 5450.377 11557.1264 3345.1585 4892.6334 6137.5756 2717.4793 13454.9158 16311.1696 9641.8521 3240.0409 4513.6863 10866.2525 4433.5813 302532581 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6338.5829 8895.4425 147040.689 8767.1082 12750.7534 6414.6644 2381.3879 12924.4076 15684.6124 10512.4509 169145.1938 8313.3749 12086.3917 70867.3255 6630.6821 6630.6821 8434.0799 19431.8607 9145.6882 15180.7836 38760.069 13537.0977 7097.636 24149.2869 13451.3083 4899.2433 26244.7408 13441.7538 14997.4945 4618.739 7441.9282 11946.8079 7402.5583 10489.41 6468411 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. 'TAC II 18' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 22016.4099 7830.5358 163218.93 41384.1108 22245.8374 10608.0543 39680.0807 5278.1172 134155.0755 341794.2052 113004.2923 614811.5696 20879.2841 64210.3917 43759.5044 8066.4237 8066.4237 13624.6421 35602.3455 20669.5555 30180.3202 35721.4011 28082.7763 58207.3204 65894.0165 31448.546 18009.02 273949.9882 29632.2454 42962.6002 22161.8948 19912.739 44633.1722 9856.9924 30095.8772 226347212 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 282936.2903 12647.5034 22887.2857 20645.0119 8699.5364 24997.7565 26180.0737 14432.6959 13752.3816 455497.207 12048.2071 328277.8612 17505.5211 18710.1181 11811.2625 10251.3286 10251.3286 11976.0519 19187.0526 33315.0914 16975.8773 19484.2562 22987.9651 9393.4844 8014.04 23422.7877 13511.4768 32782.193 27547.4542 23585.6633 11515.8328 11723.9991 19323.2384 9026.2079 23649.4661 383108030 xyla Carbon Cycling Carbon degradation Hemicellulose Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 8686.5775 5285.3847 10779.3593 4014.4691 3265.6506 10507.8754 6288.5302 9823.6254 4043.3113 38747.6264 8137.1528 6842.9644 3757.8238 3757.8238 4185.9402 9673.9007 5852.8982 7159.2617 7817.6374 3653.7665 3261.0168 8349.4717 2950.9916 16239.7976 7622.8088 9879.3216 3486.3744 4968.8849 4057.6189 3076.5489 12161.2636 290572046 arsc Metal Homeostasis Arsenic Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 8600.8282 5771.6081 6352.7049 5427.6874 5325.5332 5992.7533 6315.8355 9294.2889 6873.3115 90129.9112 7480.5801 6930.3107 4794.1865 3922.5336 3922.5336 4367.4287 10714.5319 7355.0775 8433.7015 9740.575 9047.6546 5425.1534 4903.374 12746.755 4783.7825 12486.3191 4722.5828 9373.4261 3982.8752 5075.613 7487.6604 7928.9499 10209.9826 319996148 amyA Carbon Cycling Carbon degradation Starch Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 37491.427 17453.7634 10581.9883 7623.0905 8059.682 12793.2649 13923.4279 20258.1404 78297.8956 13931.2547 249993.3739 24210.4026 30373.6171 13731.9248 11339.0023 11339.0023 9561.2824 23446.8029 458206.5351 17766.8422 29994.8931 21749.7514 11893.9253 12609.5627 29129.9201 10707.2718 43435.9024 12907.0153 33109.2985 15103.1346 15685.0543 17856.1048 13435.6021 19773.9506 319907286 cellobiase Carbon Cycling Carbon degradation Cellulose mine drainage metagenome 28257.2989 12912.7644 9067.377 21334.1137 8842.6819 55418.303 17689.6196 29409.0939 27909.7053 27026.0073 31772.5835 364895.6326 126515.5423 28050.9698 72396.4321 46311.4751 46311.4751 16330.5971 30727.6554 18990.6015 21373.97 52432.4923 30346.5721 11227.6482 19035.1443 24632.6335 54517.5792 148151.5918 34669.3452 28976.0362 12340.019 17694.5014 42925.5666 40450.3179 17785.074 255344048 RgaE Carbon Cycling Carbon degradation Pectin Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 8160.5166 2048.0261 3531.4863 4852.2179 5737.1617 3233.4756 98434.5938 6084.6052 5912.9296 3377.8803 3377.8803 4484.382 10407.72 5867.8078 6713.8833 6593.9194 3125.696 3256.0806 9736.5282 2377.9783 13081.6553 9090.2878 8171.1714 3847.7375 4445.0318 5886.6156 3154.9277 6324.7401 332377304 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8501.594 20601.7983 83179.1326 4197.8033 4197.8033 4983.3457 138950.7164 27059.7131 4785.3217 33799.8321 164455262 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6164.4919 5168.5517 13188.0867 5268.7837 56539.8776 159141.6185 12266.7547 18686.8863 37092.5721 53275.2501 313037.2382 51579.2408 50354.0374 42034.2832 23567.4289 23567.4289 6629.963 14665.7053 29192.4456 33791.3154 45987.0272 66635.5871 15466.4771 22962.2685 30171.1584 16070.1963 22145.8696 24940.2036 51454.0912 7885.7302 179051.7809 14189.011 37585.0242 10333.2756 259022030 exaa(moxf) Organic Remediation Chlorinated solvents NA Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 6103.7131 11154.866 47976.8212 76547.5965 8214.6075 7932.2221 5496.5941 8899.987 125579.6956 10469.3771 11184.9522 15363.8609 13010.7605 13010.7605 3398.0773 11038.0139 8615.9124 10334.3081 2973.5403 4974.9736 13878.8776 9724.5299 27011.8802 11248.2599 9313.0351 5804.0826 7434.5242 6633.2975 4564.1799 5089.3927 315276973 urec Nitrogen Ammonification NA Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 5363.4191 4960.1285 8766.3065 4972.6104 4434.7034 4032.5925 6026.285 6260.0318 3039.851 153355.9737 6798.0804 10501.4684 4371.1909 3552.5138 3552.5138 6276.9264 13385.3564 8375.4023 7530.7289 13670.344 11807.3749 4834.5161 4996.9809 10379.2719 7129.4072 15360.6955 4804.9926 10746.2491 4910.3129 5658.3411 5742.8416 4548.4149 7466.9789 229363002 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8305.6836 5382.323 9248.0631 10595.3892 6628.6091 13986.5354 4145.3349 8582.8916 7748.7349 4357.9015 160185.1423 11734.2431 11512.7743 8587.3756 25155.5284 25155.5284 7341.3612 18460.7902 12238.3211 13299.7578 12870.4409 13892.6138 4263.2967 7850.7204 13327.5393 6655.7563 23086.0153 10109.9931 15290.2375 10695.9673 8285.2823 13992.1488 16537.1768 13364.4443 56312525 bbs Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 24956.6876 16979.6795 15997.22 18017.542 18503.4579 12030.5847 11394.2258 5965.4306 16139.8163 13431.7622 8984.3468 224879.45 13233.8153 13870.8723 26281.7245 6592.4958 6592.4958 66115.2467 21965.1289 14762.899 27910.6982 32214.132 27171.4891 8123.3219 8380.1227 20448.8627 7843.1308 29708.7024 30145.1713 21524.5476 13850.8163 11327.4227 20123.3298 9034.4091 16759.5561 269989497 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 22674.6163 18248.5739 20153.1792 11011.3712 13296.5778 5079.8365 16407.2588 24706.0891 59540.7052 15340.4586 11646.6658 7669.038 16229.2441 16229.2441 12653.5659 17916.8756 10384.6246 14740.2434 6516.5239 4923.1417 18567.3333 12342.7749 10156.6109 34045.9285 51519.8603 8936.4029 18382.8409 48733.8105 28451.7975 24007.0692 7170.0387 5162.7005 256375929 xyla Carbon Cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 45165.9491 8786.3707 4570.5318 4247.0406 27776.9646 4551.2522 9054.1257 3384.7038 3440818.9934 10645.9715 9507.4137 13479.8619 7485.2436 7485.2436 4237.5635 8965.957 10955.5327 6936.8348 19672.9791 5352.3469 28547.3996 9735.985 12473.681 7587.5333 23784.1107 15261.1358 14946.2796 3813.0258 5215.5784 8757.5003 5398.3219 12337.3024 388435248 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 5171.8178 5246.6693 5201.9478 2291.4303 2714.4345 4429.938 111543.8834 65583.0711 3949.1071 3415.7506 82085.9504 8089.2873 8089.2873 5662.4376 2644.3089 9705.7974 2309.6131 6260.6047 6822.7244 3334.7953 2570.1915 9381.4437 186473357 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 46605.4127 19639.1565 26501.8259 33255.0902 76602.8822 37471.7457 31271.4006 39454.7672 27774.107 31728.8712 70844.693 21090.9297 682053.8127 71128.9547 42068.4797 71010.7644 234862.583 234862.583 24327.291 51756.4881 40767.2466 65884.4361 33702.7042 38898.3567 23071.3564 48087.6303 38861.1114 19918.9424 61534.9671 21368.515 44682.7302 25020.1159 27409.1252 22881.5321 25503.8904 48180.7537 373248994 RgaE Carbon Cycling Carbon degradation Pectin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 51648.7724 10118.7568 86765.7963 4638.3718 11872.7083 18204.2208 5318.59 6896.6073 51184.4973 6252.3032 440140.2189 8041.886 22359.4474 16221.1402 6823.6848 6823.6848 4438.7176 10512.1634 6193.9674 16695.2218 64786.6183 4712.6776 5786.853 8386.2263 12379.6536 4676.7625 21789.8663 13801.9018 11915.9522 7480.2728 15411.5559 13475.907 24076.513 8416.7689 212662418 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 22397.6748 12049.6831 574248.6836 26994.2824 25509.3522 31623.6311 38646.263 13001.1235 9820.2364 24532.66 14461.4346 217272.0161 9516.1241 28527.5109 37673.5487 12733.7491 12733.7491 37738.0627 32351.1642 18221.9369 139424.6982 29307.9876 14904.0896 9211.4091 13789.6137 15352.062 16402.1723 57429.8009 12289.5279 36059.9071 33078.864 12545.0234 21114.0993 7702.1145 20470.1545 302326096 nifh Nitrogen Nitrogen fixation NA Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 8765.6904 3906.6978 12195.3529 5489.3736 3356.6434 3441.6165 2301.9555 75698.9261 3496.7639 3188.2498 3188.2498 6783.94 5792.2953 5113.8824 2839.2277 26178.2792 6709.6465 7669.6121 12545.7098 5681.3737 5868.8455 3734.3875 5477.0804 2997.3925 2224.5282 356676547 dmdA Sulfur DMSP degradation NA SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4159.6958 56190.7165 9573.6088 2467.0211 4217.1318 2440.3844 4809.6606 5261.9794 3489.033 114363.2513 8643.9039 3822.3985 5232.2727 6604.8349 6604.8349 3913.1291 8987.8613 5804.1173 4181.3116 5692.8564 5639.1177 5007.4161 2200.5087 11331.2422 3666.5401 2530.4826 3555.818 10386.7585 2622.7029 354954337 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 71849.1083 17809.7646 24985.0496 44619.6597 48082.8559 12867.9519 13884.9645 74009.5917 21810.6372 21450.5035 416649.1592 38157.9575 686081.4682 45702.1043 77630.6483 67872.0244 47275.436 47275.436 28521.2918 122935.031 39622.8851 40779.966 291162.9183 23224.4008 20713.6518 35650.1368 58913.8282 32695.1646 113015.6655 39941.5547 95529.887 46321.9912 69190.2791 43302.9189 91336.2536 79692.058 313201314 cysI Sulfur Other NA Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 16015.5072 315215.6365 5060.8474 3419.6205 19523.3691 9992.488 3178.6082 87639.2783 5700.672 4200.6918 13997.5659 13997.5659 3158.3697 7866.2631 4856.7484 4175.0566 4235.7153 9159.7514 10450.9854 26436.2436 98440.2868 7834.7917 4238.1507 4159.0999 3898.5797 5988.1977 91204035 mer Metal Homeostasis Mercury Detoxification Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 136875.3049 11997.6519 22046.7567 26551.1886 96851.2915 9731.1435 10180.3427 22372.015 6391.7923 89855.4173 14528.6624 19108.194 522047.3846 33941.8903 40633.1129 31478.5341 13871.0455 13871.0455 14937.1845 48177.3371 16598.6023 15022.3963 59294.4804 27034.0114 22572.4111 22802.0539 25530.2974 20056.7916 67631.3827 13523.0216 27581.1943 13529.7235 15607.7325 21080.2759 11412.042 25943.4422 333391484 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 12750.6773 9973.6389 12400.9303 197572.2457 14631.3076 9455.6499 12011.582 19694.4714 17543.238 19719.1425 15396.1231 511922.674 18217.2218 29956.4825 11620.6752 16304.6651 16304.6651 10506.9794 22973.2888 26365.3174 15911.4039 32250.7274 19347.5232 7660.035 11908.0606 21924.8789 8999.3097 49877.998 63016.5947 24276.8884 9041.8446 13863.7534 17732.6206 6616.4931 17215.2732 365856190 rubisco Carbon Cycling Carbon fixation Calvin cycle Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 93751.9972 11132.4272 12957.0168 141854.6741 5188.3955 21987.0331 9429.8059 9527.9519 5576.3939 14508.2253 127822.2954 435300.7922 25847.1839 22181.4796 36022.1793 23434.8862 23434.8862 7052.4973 33198.8065 24579.3827 30280.8765 22454.0051 16178.8992 32154.5992 11721.6818 52647.7801 14405.0135 44704.7539 91156.9095 36452.8764 12209.4258 12798.7356 24392.8967 15946.0239 21761.9226 78066383 mdld Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 25622.8733 11655.1412 21108.2382 30316.2017 34546.0616 13587.1463 24189.352 36775.7827 31127.9722 22919.7695 35747.0133 372288.8149 46752.198 25704.7138 20764.092 19523.7993 19523.7993 20945.6195 30784.5165 19670.8571 29589.8556 22455.3857 19942.914 14046.8888 20403.153 35078.1875 13751.1719 68099.2301 36549.1802 49780.847 14129.9018 27268.5898 24948.7404 6748.6175 20323.9564 66801973 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 3686.2006 6315.805 3417.4615 3385.8407 6235.8015 3457.8668 103289.2286 3782.0365 9032.7269 2247.9179 2247.9179 2889.7039 8397.0741 5713.5551 4041.8718 5445.1271 4776.0316 3337.6443 7806.1612 8164.1224 6662.3966 5907.1472 3730.0157 4291.2756 4486.9588 52972.6597 152986276 exochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 46271.8557 7682.441 31251.0632 3264.7063 13956.6741 71057.5133 9128.3275 5436.6423 2454.3194 5724.1788 2906.0129 4995.4343 15977.8373 335420447 PRI Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 9744.2721 3724.5285 8004.7845 6007.0873 6983.8879 7507.4844 4798.1598 8271.7149 5650.2514 2718.8992 2718.8992 38516.4589 12447.9238 11318.9271 6723.509 7980.442 2714.7881 6616.0592 7837.3738 12304.7284 7118.7798 9571.6486 6540.2469 4328.005 6860.144 4951.4424 5079.8316 323366214 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 18162.1598 14758.4856 33161.3615 5366.801 3013.0511 9342.7992 5064.7544 11585.9877 95045.7461 20960.864 397651.0286 13064.9703 15225.1699 31609.1863 14434.9908 14434.9908 7184.1 25333.1961 10399.1979 7963.6452 23063.0673 26018.6644 10049.3277 8106.6604 18092.0193 4700.044 28700.9557 18080.0259 18165.4097 8368.2978 12801.1293 12959.1421 7848.8672 8501.507 324967164 cysI Sulfur Other NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 3840.1813 5860.68225 2204.4428 2204.4428 317477091 amyA Carbon Cycling Carbon degradation Starch Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 16502.8777 12020.1815 15232.9832 27876.0117 86465.2872 21902.451 125528.7487 12027.6343 16302.6244 152020.3879 12314.1253 8946.8274 16198.3765 10090.1562 10090.1562 10693.3295 19224.8415 20646.9318 16645.0123 19253.2019 10524.2942 5929.6199 13465.402 12643.9031 10019.0312 42032.1956 12382.5405 25775.2534 11021.0756 10361.8227 20387.5916 12173.8102 17129.504 289523723 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 276437.5184 15913.3039 86744.7762 312628.0657 89930.8418 25332.595 80828.7267 150366.0833 204369.0136 103541.0672 131377.1047 159399.8914 2389467.0657 214636.526 110319.1663 181048.7754 96877.8083 96877.8083 84220.1161 169906.5406 81211.8752 233250.5593 170431.6667 160785.504 92650.5012 86292.9378 125193.918 90640.8961 335643.8454 180875.0252 302456.1069 86346.1228 113290.0204 137431.6182 97316.8364 136615.6284 166835917 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. s6-204 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 20872.1846 18555.4621 5375.4648 4418.2409 3578.1378 3556.4126 89706.9808 4331.2779 134923.8665 10293.1846 8977.4899 8482.7449 6631.2238 6631.2238 5249.8628 18587.7329 8927.0758 18801.6848 5352.5701 7056.6836 13132.5332 20051.8701 26342.5976 17948.9145 22803.99 17069.4017 6078.3143 6244.7741 6297.1597 8188.1117 259485117 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 79361.6691 20152.9849 22871.3776 10598.5125 13605.4606 20206.0226 23348.7315 25998.5743 34699.1636 23141.3974 395087.644 21937.7381 118205.51 15969.1691 26001.4921 26001.4921 15385.7977 28245.2575 19619.432 44592.6937 111241.5484 56996.0036 11105.1096 12523.7159 25963.1671 26103.8773 48203.1899 18053.1807 106215.7162 10984.4195 26226.2508 16380.2609 12362.7665 20968.9642 344169756 cmci Organic Remediation Aromatics Other aromatics blood disease bacterium R229 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6427.5217 4124.9714 5161.976 2652.6832 3489.4461 4263.0264 4361.1519 111987.0977 4593.2387 4335.4524 5874.726 3953.5442 3953.5442 11762.8379 7836.6781 7182.7908 17164.9526 5630.4162 4959.7289 4060.7552 10179.9931 4059.4354 12348.4238 8462.4867 10081.2001 4707.4165 5210.8477 4405.5764 3395.8439 63258.8826 152025939 amyA Carbon Cycling Carbon degradation Starch Bacillus cytotoxicus NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 4906.9494 4766.8006 55405.3147 2831.653 4949.275 6028.1266 5046.6226 4536.0129 2444.2431 5588.1609 2191.6412 7901.7235 4383.0662 6364.4221 3097.4353 3525.6361 3590.5027 7008.4736 118166305 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 83186.7404 98724.3469 66713.7051 836225.3457 45907.0936 10878.3094 133512.0694 172734.1281 81381.5389 75979.0233 324888.6411 181464.0271 654320.3722 399366.246 80755.85 80938.3071 90751.4079 90751.4079 52186.8597 123479.3467 65951.2431 47770.2254 77674.575 82646.0634 47466.3315 58940.7668 133886.6316 48800.0281 697546.7363 84433.8603 104973.6842 143416.7333 73375.9042 105475.0495 113364.9534 166302.9153 395773650 cmci Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 97959.6374 137873.2579 82514.032 17772.6665 248571.7853 30826.8911 39501.9222 31927.9674 50026.7534 64983.8246 54372.6596 924383.8131 42652.9708 124433.276 74940.5891 57433.724 57433.724 33446.5417 59507.2412 35399.3603 67463.8368 140645.3538 68498.7907 31383.9156 34391.8401 48340.6731 51702.2562 83008.1248 73764.6153 141345.1039 26492.243 46072.9447 53322.6232 59316.2224 71736.3295 209965564 mer Metal Homeostasis Mercury Detoxification Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7291.4405 911106.803 10354.4112 23795.1631 4343.8298 9680.8842 13033.7335 14524.4599 15606.6001 6873.9475 143277.8076 8619.6763 11129.3962 8367.4384 5889.7699 5889.7699 8217.2391 14903.4568 13558.735 14161.9825 10808.6555 16309.0228 9156.8104 12425.6551 22420.0088 20492.4007 25239.8208 19365.2296 20309.9648 7502.172 7569.0951 9385.3785 32779.129 8907.2452 87281113 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12665.867 4406.8371 4208.1871 5138.5982 5413.293 4502.7959 17449.6365 3130.8812 85952.1628 10839.4745 6722.3967 120720.2063 120720.2063 5315.6785 12863.8785 17666.1947 7358.029 16961.2831 10679.3286 3663.6735 5012.0656 7712.425 8119.9773 13664.5709 5989.5096 17996.1385 3974.5155 4733.2963 16099.2163 4127.3373 7088.0258 237858235 GAPDH_Parabasalia Other Phylogenetic NA Joenina pulchella superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenina; 23198.3695 6321.4258 10440.4111 15249.3083 8287.7547 21155.3455 8655.8026 6205.9617 11051.7188 19640.0535 7578.0051 292034.3708 17864.6335 15413.5487 10491.4186 8732.8532 8732.8532 14287.4275 25878.078 56930.2248 12422.8939 20512.0534 16633.3081 15850.5738 39542.3862 19083.3524 9912.381 59330.4355 8430.2846 17840.1165 10932.4939 15897.7665 13705.4363 13214.5958 14606.5283 195537597 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8455.87 5936.6163 184627.8567 68550.539 5633.4495 8455.5967 13666.6785 29493.6603 9099.5944 14282.6114 14718.3117 188533196 ppx Phosphorus Polyphosphate degradation NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 4022.0234 20237.169 182727.8423 8121.7453 20575.118 2360.4183 9080.1967 3471.7735 2782.8045 82265.7692 3896.2736 4568.3483 5374.4435 11268.3617 11268.3617 7976.4196 5877.3087 6120.6911 4358.1328 2250.1804 3402.3374 9192.5788 2274.1573 12607.1312 6924.5769 8470.3346 2713.0298 6085.762 5270.5627 2851.8144 7277.7528 151279981 ppk Phosphorus Polyphosphate synthesis NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 474909.343 4766.9065 8049.9524 10654.8505 5962.0211 7584.1653 2903.4012 29817.6529 5646.7189 12374.6739 137833.8954 404261.1347 8048.3128 5034.2633 4007.0452 4007.0452 95720.5687 63104.0997 9748.3086 33999.3575 5512.461 9011.7876 3981.3898 9104.9013 31001.2682 4086.2524 216398.9142 8911.0273 14138.3531 6132.3809 13439.2377 10007.8557 4904.2839 5680.5544 167519765 hsp90_Choanoflagellida Other Phylogenetic NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 45841.4998 72730.4057 47340.0939 57630.7881 81750.8346 13349.6874 21642.038 123577.4582 30611.8805 32793.6654 48499.8141 29323.157 943299.4616 86157.5011 48862.8562 88330.619 58344.8805 58344.8805 35990.0314 110099.6555 41419.7397 49361.787 59136.8094 81201.8371 54796.398 31831.8659 75121.1069 73873.8377 198494.7546 53327.9866 62255.3223 34039.6757 50392.0998 64128.8487 31396.5202 65375.67 88947140 ppx Phosphorus Polyphosphate degradation NA Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 7342.7839 8033.1757 5287.7128 6919.1123 5030.1929 5966.8871 6590.6494 11538.3241 5643.5482 129849.5191 8957.3678 18981.6029 4955.032 5163.2493 5163.2493 12858.1266 20310.0655 7678.2203 9814.4708 14059.938 9156.5786 3912.7393 23120.744 11405.496 13776.229 17348.3686 11332.9872 15383.6092 5511.7334 6697.3676 7764.3074 69564.0298 36705.9873 219965748 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 62818.8775 14227.0648 71604.5157 42233.7691 46176.4053 13507.1684 75839.0411 92315.3044 32437.4569 32650.8283 61103.3453 56659.2864 726765.5439 43414.646 429357.6017 1751432.8818 69663.5863 69663.5863 22478.4022 72813.8966 47170.3242 855123.5747 59395.3672 72643.3355 29883.9022 43024.4661 41509.7267 48692.1787 98153.6949 72923.4283 62486.6372 26262.7935 48567.4022 44376.9273 36504.7771 86000.7837 325298779 amyA Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 33834.1964 10696.4706 266948.4367 10051.5029 9322.9279 25860.0857 145507.481 16504.126 16393.3072 16039.5219 12544.675 311881.8337 24211.1058 17567.608 46796.0028 9820.9955 9820.9955 9740.4181 21146.4959 32303.2463 20881.8545 40409.1785 25392.0507 54983.5144 21261.268 91504.5468 118133.5276 41452.3596 74296.1016 18075.5838 14067.867 12961.2547 12791.4426 140705.8472 245073.7675 213536703 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 14528.4605 9160.549 6386.6469 6636.5779 7431.3372 3563.1894 7027.58 6847.1759 12397.2762 113862.0065 6951.9699 6645.7801 7337.3485 2530.3501 2530.3501 4330.4044 14581.866 116780.991 8485.6496 9366.4828 3318.0864 5339.5126 20821.2645 4917.398 14658.3661 335237.4315 10961.6191 5747.0029 5303.741 12820.8835 5403.555 11592.7597 88179725 protease_serine_fungi Carbon Cycling Carbon degradation protein Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10732.069 9118.9913 102149.4435 9024.2814 3426.5454 3560.4094 6134.854 53210.0729 4130.6631 4130.6631 7462.0333 4055.0239 5644.6409 5158.3517 3088.4655 5030.2401 10176.1248 7583.5482 5784.1737 14302.1056 2066.7391 7070.4161 4570.664 4884.9493 222090440 protease_serine_fungi Carbon Cycling Carbon degradation protein Chaetomium globosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 84812.8216 55833.379 10695.7411 35307.9349 19014.0491 50998.1627 95475.8147 79401.3432 53976.6165 128134.9277 69672.3006 814563.3639 127719.6302 180100.4699 119327.1156 76640.014 76640.014 145581.9437 92195.9837 34036.2646 44734.6871 70644.9495 48273.7301 39671.1974 58534.9561 48585.6136 117022.4198 274615.434 57803.9355 62473.9357 140821.5952 49451.1795 120121.4094 38312.7484 98687.3062 309779882 chnc Organic Remediation Other Hydrocarbons NA Ralstonia sp. 5_7_47FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 5188.2213 5201.6625 7896.6413 11632.1622 6458.635 7020.8494 3894.3704 6632.4359 3965.9174 100795.4628 2044.4568 2044.4568 9921.091 7463.0471 4721.7466 32125.4733 6294.1016 4024.6216 3270.7837 2794.8671 5088.3159 7427.134 4654.0079 3783.8897 2952.1167 15597.0206 13236850 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. Cam-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17533.9462 6481.8794 2654.0814 14567.3591 13388.7642 4807.3533 4598.7213 97258.1367 7659.6905 5072.0133 5302.6789 3367.4716 3367.4716 5060.3588 7787.6895 6558.5796 7655.3876 57338.4137 9225.8539 5177.6805 12699.9127 4041.4749 11272.92 7482.9359 12109.6676 3019.5981 16063.7639 3924.7636 4254.884 7323.0574 365265838 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 14937.5401 7956.6623 19541.1471 13766.7739 6243.0888 6272.618 7575.6839 9092.2749 21389.8184 14689.7281 189109.5066 11491.7519 9612.1499 12953.0745 12946.1655 12946.1655 14422.6836 24119.3558 13931.9101 15682.0154 23039.9124 16779.097 5856.9103 10893.9612 16920.8359 9027.1131 27168.0209 13206.2434 17392.9857 4393.8324 16251.5032 10549.1521 7964.4603 15127.706 302672831 glx Carbon Cycling Carbon degradation Lignin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 8069.8538 6291.9838 4681.5277 4084.8078 4802.5569 67911.0726 4435.4059 4561.5217 3832.1567 9494.2105 5604.4394 6159.5137 5463.1964 13246.7634 3330.5674 3183.393 8029.1748 2640.3925 11961.5547 5036.7968 8805.6224 2423.2766 4732.5207 10215.7144 3083.7102 9006.7973 334703032 endoglucanase Carbon Cycling Carbon degradation Cellulose Aeromonas caviae Ae398 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 573195.413 13116.4471 26548.6155 44900.1914 15503.1002 6936.0203 32334.543 34041.9726 38521.3652 39628.7833 35176.2011 31952.3209 585139.9923 57214.7158 37087.9433 34255.9169 29197.94 29197.94 27749.5364 54858.1743 104458.0393 108231.6604 68501.9882 56414.9681 49113.5938 22689.0615 33737.3356 35541.2383 75085.1804 29926.9927 42569.5189 49876.4416 145955.2436 57562.6456 25682.8047 56056.8824 312113382 dsra Sulfur sulfite reduction NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 5760.4652 9728.2888 7789.7945 8031.9904 24625.4719 11704.0855 2394.3316 6320.0374 10458.4701 8039.2184 151575.0404 14111.2739 33382.8867 11054.2636 16610.7858 16610.7858 6431.5412 33754.5981 8821.6903 7320.6471 20445.987 7848.2441 4273.7825 9475.9239 12218.9908 6326.9719 44531.4598 10517.0028 19906.4757 4791.0136 11710.8956 7827.7425 6284.4502 7619.1323 257805588 cellobiase Carbon Cycling Carbon degradation Cellulose Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 6578.3631 2312.6338 87497.0111 7325.9822 3208.3029 3208.3029 6089.1365 5904.4907 5295.0487 357400160 ppk Phosphorus Polyphosphate synthesis NA Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 34893.4961 36384.7272 7918.6547 8489.5133 4239.8607 20469.3521 11095.0838 23974.1732 12608.2444 33393.4797 472022.6442 14664.7284 18741.8697 23978.1501 21433.6651 21433.6651 7647.0945 23835.9695 10997.2603 21915.3397 16789.2532 4531.7149 25342.8117 13405.4959 9504.4552 8697.0674 13871.6366 11652.1779 14605.2643 6304.4867 10697.6623 13642.2538 44053.845 12962.6268 339282941 mnp Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 11784.3214 6339.3852 39249.9603 15772.0376 10140.4931 8680.1134 3928.334 6348.5656 23482.2346 9909.0056 215040.1092 10028.0909 17584.1655 10013.525 33186.2835 33186.2835 10755.3246 19799.6905 11450.539 10498.0501 18546.0169 11394.9264 58603.9129 7237.0809 15083.3923 5865.9073 33473.5485 19030.8554 17546.4907 6581.6665 10803.6251 45235.6572 5879.7609 10852.479 120593541 fccab Sulfur Sulfide Oxidation NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 60511.3505 37822.2576 97604.4236 41015.051 26709.9992 12116.8729 42778.8292 39306.727 16430.2508 31168.3971 78758.5213 33724.1635 839257.2462 41585.4514 50316.3403 117889.2344 46272.875 46272.875 210487.7632 63293.1861 43164.4242 46320.5688 38560.3384 37497.4543 29062.1902 33721.1503 66929.3481 35558.6051 123969.7484 41911.8762 73065.154 25327.6193 81312.8717 55025.0827 22169.7033 36032.7229 312196690 cdh Carbon Cycling Carbon degradation Terpenes Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 13626.561 14849.6124 8413.3181 23242.3436 5617.0913 7953.0354 5729.176 5774.9371 7179.55 70972.0945 4778.6268 284697.7178 19904.2908 11670.9697 45947.5573 6425.2958 6425.2958 6170.5689 15584.0472 11534.4079 14292.9674 37191.3692 11103.2706 5331.8637 7691.4827 10763.4726 6562.464 18335.4418 9804.9674 11420.7777 4488.4591 6038.0232 6398.6043 4925.8649 10684.2707 333483391 arsc Metal Homeostasis Arsenic Detoxification Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 29015.3395 6606.3997 4277.781 6728.1802 6293.7474 3203.7385 63119.8701 2274.5771 2274.5771 3691.6906 10262.8836 8097.2736 8938.7639 6101.8169 2513.9875 3253.5813 13202.6552 8801.0816 2632.1905 9491.8117 6969.2369 7100.6801 8304.9241 345858673 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 27296.9968 14759.2567 24559.2453 43723.6472 56446.8204 5438.762 335321.7258 30884.5242 16820.1143 35990.7893 40791.4262 41236.5473 841320.6977 40179.0711 52573.5554 38929.3131 22376.7111 22376.7111 19901.5283 93913.1505 29629.9373 39384.2049 49918.8683 142023.3008 24357.3127 17692.7077 47602.8914 30853.7036 80299.8398 32372.7633 43128.4034 76427.9069 24330.3475 30517.2055 109191.7031 76748.8846 255956197 Dyp Organic Remediation halogenated compounds NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 16530.8278 14341.3448 14124.5696 9956.0523 13905.3844 12750.786 11484.877 13782.7399 15542.8024 8872.4097 567187.09 16626.7039 23802.1722 19483.5324 10452.2399 10452.2399 11291.5891 27519.1883 14438.5691 243784.3052 17942.3865 33211.9674 9774.0359 9825.3148 26251.1774 9478.5305 34831.5329 14005.5709 25461.2635 7987.1945 12613.1615 13213.9992 7400.5129 24507.2641 349779259 tktA Carbon Cycling Carbon fixation Calvin cycle Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 4458.8479 11625.1396 4599.7864 6256.1677 251372.4588 4290.5381 6313.0403 2112.5159 162952576 ppx Phosphorus Polyphosphate degradation NA Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 11134.1927 17712.7933 21892.715 14024.6708 9398.2165 110678.3199 35684.2418 55513.6887 7657.9551 6472.4181 12715.2437 10658.9079 10658.9079 5424.2881 7806.5401 15948.3337 8144.5042 3543.92 7620.4239 24714.5233 5566.2105 25614.4009 7078.5073 8384.6538 7558.1724 6301.7426 12180.9352 4337.8602 9391.3356 356479154 ppx Phosphorus Polyphosphate degradation NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 21508.6719 15180.5766 7456.6222 17829.1106 37296.0618 8148.9099 22215.3586 28625.0985 24947.034 17977.5334 34209.376 31225.6675 391012.736 252367.9998 22639.3317 15728.721 16064.3434 16064.3434 10869.5873 35718.912 21311.7361 15389.9292 24992.9226 42481.6922 11304.0712 15230.4152 32539.6506 16838.3899 48611.8955 21668.2573 27518.192 12710.8516 29626.8201 15598.2752 15479.0108 25999.2268 325964219 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 93522.7712 46686.2015 23298.4144 23491.5064 19967.8411 30723.1706 42013.1411 18868.7633 25884.8005 18996.8655 366591.4691 36578.5237 24676.4564 57613.3535 27102.2628 27102.2628 11849.3884 62318.0477 22062.4984 36044.521 27761.5008 36492.7646 21843.8625 37001.9787 27640.7125 18281.1117 160735.0295 28586.2971 35648.8232 12195.0061 48824.873 34411.0189 15579.6789 37969.2875 359778599 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 24869.2681 4433.6979 291352.7864 33229.3069 16482.3254 27545.2614 11737.2488 5153.9088 13982.9248 17479.8239 25925.778 144343.8843 8748.4831 16643.5591 17322.4153 152325.2868 152325.2868 7379.8008 20314.0307 10817.9866 8234.3617 14425.6254 38035.7385 8471.7566 8205.6687 17662.5328 42164.409 23277.9598 21499.8231 27895.5174 7223.5215 9679.6724 16615.2258 13086.398 31870.7684 408749690 catechol Organic Remediation Aromatics Other aromatics Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 124136.2533 491455.0848 28306.1252 44358.3077 21609.4886 56220.9672 49276.4653 73457.0498 50375.4358 70322.2074 246231.3904 1769497.7511 54462.9667 125194.9529 174695.968 114939.3891 114939.3891 76463.563 114735.122 75149.0285 91028.6066 176758.2927 81865.7076 52876.0796 60981.452 181326.6544 66945.6509 141988.9891 84917.5079 248334.5579 45368.5212 84752.2856 133260.2822 89129.6073 59118.8973 402759785 b_lactamase Virulence Antibiotic resistance Degradation Acinetobacter sp. NCTC 7422 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 26444.3049 3087.2114 3857.0031 9261.2367 2905.5081 65819.8977 4399.389 3975.087 4742.1808 5367.2306 8075.1629 6550.4368 14311.5112 4982.353 2407.3532 3542.2795 6074.4183 2355.4312 9501.033 7185.0302 3128.2746 5222.6418 4902.2296 10981.7534 99083009 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 30098.2539 21760.4039 34809.4246 22578.2908 12819.1954 20002.8012 14972.741 13771.2194 21614.8358 30696.7711 11253.7736 456692.9052 28663.6017 19668.0546 18583.6499 9278.1759 9278.1759 19266.0643 30248.8682 21783.4266 24789.0462 33316.2089 59430.7847 11770.0864 12927.7862 27324.1851 16744.5331 42468.9403 33283.7803 30951.6317 57705.5889 15358.6285 19232.1171 16381.5939 42681.7165 325001908 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 176847.7902 40888.5689 53112.626 98250.838 70503.1929 34214.1961 39473.4048 225895.6211 91511.1007 43921.2541 68794.5531 80496.5375 1579115.3682 58753.0605 85918.2886 120716.3938 65149.6736 65149.6736 488337.3343 141314.0186 36230.6825 112963.512 110441.9555 80040.4721 57633.3585 82363.8684 52031.8311 55087.9628 222320.7331 61041.579 67822.0045 32113.8018 71561.6002 81405.5111 139908.7286 74622.4753 134099390 dehh Organic Remediation Chlorinated solvents NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 35147.6644 49255.5816 17094.3712 31846.1956 26911.7842 13448.3676 22791.1092 20435.5945 20631.9175 40583.6115 22261.3931 1498972.2817 29891.7475 30512.3166 50853.2547 25430.8184 25430.8184 30807.906 42586.1575 34047.246 22591.7047 50742.2741 26321.2945 29799.0874 17661.5518 34709.2652 14853.776 145461.7767 37406.1569 50976.4325 16027.718 24479.7442 34985.2454 18056.1375 24966.8482 326440094 alginase Carbon Cycling Carbon degradation Alginate Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 6580.1536 8868.9282 2397.9605 4829.5553 3221.2045 4448.4118 6005.3685 85815.514 6353.5526 5564.4158 5450.5713 5290.2789 5290.2789 227559.7491 11306.8787 2241.9176 15401.2824 6869.0421 3999.5057 18519.4568 6719.771 8475.7039 2934.2137 6772.3631 6541.8901 8938.349 76577410 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 621233.7928 4654.3894 22909.7051 3077.6263 2415.1404 11514.1739 5630.852 119275.0956 6168.5063 7498.981 3000.0029 3000.0029 5151.1968 15817.807 7356.3405 6813.454 8622.7891 9804.4339 3373.6703 6550.5035 8409.1168 7041.2863 11170.921 7057.9254 8008.5866 3477.6264 4685.0725 5764.7541 4008.3679 5700.8423 330719852 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 28307.0019 380936.3192 25238.763 28929.1938 40754.9674 6494.2076 28174.4391 39220.5304 10320.8555 17550.5692 26489.4667 13746.19 572879.4486 38367.9335 29902.7738 19815.7421 14702.0913 14702.0913 21437.6749 38648.8264 29216.6249 50542.6447 342651.3341 35448.0415 17905.8224 17026.3986 34263.3015 12356.0674 55062.1568 34366.0566 38055.4717 27002.8335 20758.4346 21799.3873 17434.2416 51624.487 296269856 amyA Carbon Cycling Carbon degradation Starch Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 70486.3779 10702.6835 8573.6693 10207.2982 60901.317 27889.0955 3278.8648 3278.8648 5584.9593 7963.1185 29972.8447 651251.8198 3403.4888 4106.3719 164498987 amie Organic Remediation Aromatics Other aromatics Mesorhizobium sp. F28 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 32318.4157 26873.743 17251.3501 29212.3378 13291.4111 7584.4802 40625.5518 27138.8063 24214.1869 21266.4145 21155.5543 28696.729 1587832.1152 35294.587 95293.6445 59244.9653 53533.0784 53533.0784 12691.6003 41053.4456 28716.9119 31665.7166 31241.48 22371.6799 15951.8152 23657.4892 82690.6904 304793.0572 104903.1317 36509.837 46876.115 51940.7719 33055.5687 28997.5832 16075.4324 22713.2861 359734805 urec Nitrogen Ammonification NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 9288.4156 5581.8836 3455.9157 11700.8571 9148.7254 8624.0966 18286.574 9555.9829 133514.9143 5764.0668 19644.0962 53835.4339 195209.9385 195209.9385 4916.2496 18349.0442 6999.949 20476.2286 9681.4626 4731.0868 6939.78 14264.4192 8344.2616 9177.8976 23016.0447 9106.622 14120.7054 7649.0966 7188.2218 7726.718 4270.4274 6476.5422 209502687 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10942.3672 6214.4747 3858.8686 8390.9869 25141.8472 6119.7337 8049.0646 6481.8575 156330.9988 5179.1966 17963.8617 12001.9674 134217.014 134217.014 5110.3945 19410.0076 9842.4457 12871.4718 24727.0922 4958.893 4892.2991 13620.253 9070.726 9115.984 33810.8543 14658.3866 120285.7752 5289.0736 23148.9398 23595.6651 4681.2874 7408.1872 94983139 silicon_transporter Metal Homeostasis Silicon Transport NA 24821.2251 37150.8902 70390.691 33503.4234 2376.2232 4199.5813 5310.0166 60326762 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 27750.4622 41943.3776 9120.5624 25133.7292 9292.1746 16181.9471 20937.0819 18831.2687 33252.2523 22257.8084 19045.1428 384228.2452 89545.7088 21839.0492 25589.7963 24403.4872 24403.4872 18364.4598 46765.1654 22983.0795 23961.0253 32070.5557 55910.4817 16457.3299 23021.5364 36494.2451 20293.7386 80164.8132 41951.605 20387.9067 12885.5105 15754.8629 28361.9068 17095.8832 24852.0429 330996010 RgaE Carbon Cycling Carbon degradation Pectin Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 46844.4306 65462.5586 9455.0695 12662.7974 6182.4907 3053.5799 24136.1046 108571.9669 4693.298 7618.7476 7106.526 5146.2697 5146.2697 5208.5605 8043.3545 44445.476 15873.304 11611.877 14750.0819 17838.3954 4109.3885 7065.0091 8549.225 20443.9993 16365.5545 17879.6015 3117.1046 5145.1259 8864.7607 5733.8256 10183.9065 94470923 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13850.2035 14887.714 11113.7841 18991.944 11353.2846 5727.2637 11692.9287 11020.3931 12433.4474 3072582.3494 6471.5499 16599.141 12471.9048 38398.574 38398.574 4994.9991 35470.0511 14246.6101 7135.2132 23977.4604 12162.1851 13530.1063 11043.7205 19906.5932 19294.8035 27362.6205 19001.602 14566.4134 9957.0715 10631.9123 8264.8416 21475.5687 19933.7671 336392297 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 11958.4904 11439.551 13141.5465 5019.344 3703.0708 31828.6666 4594.6462 12661.2295 15890.6698 9184.0854 193444.5699 13479.0161 11905.1322 9527.8803 8510.1993 8510.1993 8298.5514 27905.1988 10041.8515 15203.0403 17434.776 16515.1378 5314.2079 10069.7596 27690.8938 22160.7171 22998.6662 8173.8161 15455.3105 30053.6222 11370.9857 11133.2334 6848.1671 12886.3146 73535252 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7041.6496 2940.458 5577.8116 7076.9836 5025.6018 5101.1498 3897.3624 70660.214 4896.3165 5874.6116 5874.6116 3042.1299 19121.7485 5130.6455 8842.3109 45642.5688 4839.6506 3322.9889 4006.3623 6101.2084 12458.5868 4304.8678 8295.3969 5825.5929 18289.6975 7550.6295 3863.516 9461.5327 149359187 tfda Organic Remediation Aromatics Chlorinated aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8535.0773 10200.95 33338.9138 44009.1108 5134.9936 5485.485 8665.0243 11838.4862 5489.3845 10990.5071 18367.6243 152895.2282 5838.0061 9244.8702 14598.1349 6249.9185 6249.9185 5051.8241 17623.9743 16920.3385 20309.752 17062.3951 11638.3161 106182.6308 5522.4564 18460.5485 8947.8302 29691.0139 11151.8594 10870.7056 6441.3306 19031.5674 8417.2996 4112.9956 7820.0479 298113072 urec Nitrogen Ammonification NA Streptomyces nodosus subsp. asukaensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces nodosus; 65321.4069 5479.4715 9147.4469 27916.992 6165.6657 50932.0977 6708.636 9003.1868 14654.1622 10426.9939 250548.6498 9360.3987 23001.779 23894.3026 17092.7594 17092.7594 19473.7112 22622.2711 18725.5495 138931.0598 21289.9649 35167.8584 12844.9314 24668.8083 13053.9288 41612.5831 51285.9871 19983.3414 35649.5573 7332.8621 20925.2603 12250.9211 12653.9112 69873.566 357935650 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3725.3922 175426.332 9122.2327 3538.2198 5448.0234 4245.2058 3535.2493 4559.2046 119900.2752 4173.2989 8642.568 6282.7049 2169.8043 2169.8043 3030.2028 7188.1881 7229.1046 4270.1193 9724.9972 3666.1641 3855.3094 9372.5799 9706.18 4457.3251 14765.7976 9304.1879 18089.6951 9470.0236 4375.7409 8367.0825 3435.767 4956.4887 158113291 ppx Phosphorus Polyphosphate degradation NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 21469.7327 14302.404 17617.0566 64445.2516 12649.7826 7032.4635 11744.8424 13289.9194 13944.2125 34550.4778 12691.9318 355362.077 12127.3399 11774.1952 16769.2977 17324.2577 17324.2577 7678.9031 27804.9806 21738.5124 87789.1961 115117.2414 15190.328 14151.0799 25553.9113 23669.5249 15272.7025 60959.4969 19303.203 26436.4379 12851.7766 18944.6885 29810.7802 8377.6621 15161.2137 157406148 arsc Metal Homeostasis Arsenic Detoxification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 20505.3019 54785.4202 37974.1475 3791.4951 11609.7696 6030.9322 5898.6612 15137.127 25632.4778 18702.8059 19843.1764 318970.992 12778.9334 15780.4071 38083.1568 15329.1868 15329.1868 39978.0103 23600.4683 9127.4608 291153.7229 15908.8507 9169.2937 15972.4256 10773.4011 18788.9579 5505.7192 20137.4629 11211.8252 102381.5745 17641.5749 13628.3232 15693.0353 16123.5508 29484.409 9658291 amyA Carbon Cycling Carbon degradation Starch Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 33032.1132 19000.7739 8777.6821 4153.8493 8147.7931 8794.5894 8840.9053 15599.2244 18328.9676 15728.7127 1398856.57 15967.4434 17718.1017 24845.1853 24009.7118 24009.7118 17472.9236 28345.3773 9328.5877 15478.066 9877.7848 463754.7281 9592.3466 7899.4611 15339.5638 16699.9935 114072.3048 15474.2951 11697.9718 8698.7647 10318.5872 11880.5759 6388.7869 31270.2322 384084923 ppx Phosphorus Polyphosphate degradation NA Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 26222.1126 256260.9967 6395.2447 8093.9085 12864.139 4185.866 3328.5831 5302.0219 5043.9076 82321.0599 7801.9108 6125.9585 6142.8099 3248.4978 3248.4978 5389.4153 15364.3285 4804.1919 6265.8821 9436.0767 3861.9263 6863.0619 4344.7829 11722.7208 3523.9935 24396.523 8811.47 6937.2744 6825.3046 6096.4748 5257.7796 39560.2295 8168.7836 89890058 amyA Carbon Cycling Carbon degradation Starch Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 4271.2142 6095.6716 3503.9739 4308.578 4454.4418 64700.7904 5416.0419 3713.2685 2108.7594 2108.7594 6459.3553 3701.3134 10710.2703 3645.5332 2498.8662 5858.8193 8745.9296 7054.504 2307.0712 3637.5011 4416.1708 4723.4872 255301798 bphd Organic Remediation Aromatics Polycyclic aromatics Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 6425.9837 4446.8265 2616.0855 4218.1517 2707.4939 4534.4148 4933.4016 162323.6861 6812.3667 2477.2883 2477.2883 3229.1196 12416.1992 5344.7735 10054.0736 6761.9027 5641.5101 2651.5347 2756.6248 11046.555 3259.7997 12907.2099 5890.6557 8263.4501 3095.9221 8260.3072 4306.2583 3788.9468 7779.9387 332188869 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 66563.3931 192171.6804 22391.3964 28635.517 17664.1202 12795.1448 13567.4922 35109.3273 20905.278 20996.9877 10905.1881 501877.8321 33466.9067 20635.3093 13673.502 10251.8521 10251.8521 11979.1051 31133.7793 18246.4898 17047.8269 245443.1452 22306.1849 35965.3767 11950.8056 20968.6432 20739.6222 47304.8471 18317.9322 23033.4827 14257.3539 14141.1672 17236.6886 12181.0282 22346.2662 84780887 ppx Phosphorus Polyphosphate degradation NA Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 9923.6169 9411.4004 20454.9102 8086.0391 14621.3943 4926.5997 17092.2096 2358.0732 5579.5674 11637.2711 4524.4738 182921.3095 13575.831 6282.9194 6700.1048 5556.43 5556.43 6194.6132 13712.1091 8684.2381 12660.4711 10327.0316 8646.2488 3850.8159 5848.2554 12252.8866 5805.4985 24408.4359 10415.4998 15657.2735 5390.9191 10738.8843 9246.9322 6770.4095 33321.2363 381403415 xyla Carbon Cycling Carbon degradation Hemicellulose Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 189828.3983 62706.9988 41267.3747 291144.7974 26818.6368 5522.9342 44614.1094 47070.4298 124425.9463 36973.8259 44410.4311 57993.3488 925732.858 113923.1261 75833.8106 60050.1171 84389.7042 84389.7042 24670.1434 72161.9913 48753.9834 35284.5501 74713.6916 45319.0521 42303.6362 33115.8833 47771.0021 46093.4916 104510.3521 62972.3388 62119.6806 40730.9214 43050.1484 78015.6108 38911.9572 127354.998 46200009 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 19724.1977 11268.4608 23768.1948 64896.8235 47323.6293 26033.9922 93009.0935 8476.5479 8476.5479 22083.4562 10653.3638 19214.0203 6029.5111 111731.0246 81557.3547 4996.8876 4823.665 23199.1613 15660.926 2554.326 5734.0278 390419840 nbac Organic Remediation Aromatics Nitoaromatics Aequorivita sublithincola DSM 14238 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Aequorivita;species:Aequorivita sublithincola; 4227.7285 89316125 mer Metal Homeostasis Mercury Detoxification Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8040.9233 618297.9632 5883.0371 2616.3298 8526.6156 5715.2551 6703.816 4133623.6553 3920.032 4228.2606 35147.2588 35147.2588 10488.588 7829.3412 4129.3949 7371.8517 7855.4372 3075.0544 4481.2976 10413.0585 5370.6811 7793.0156 3852.0338 9527.0155 10129.1746 8222.0519 7542.2095 194332882 dsra Sulfur sulfite reduction NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 13426.0206 125839.8297 2785.5155 5671.4005 4406.9824 3862.6341 4656.7877 5241.3585 141792.0532 4611.2263 21330.293 9646.4181 11517.3931 11517.3931 10302.467 21438.4585 11873.0325 5942.7348 15344.3806 8273.7347 9283.3425 8609.31 47950.2617 14284.9699 22539.2846 8340.0031 14468.3327 10305.944 7949.1995 7318.197 6081.8839 8255.36 375105627 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 8058.6939 2786.3368 5531.5695 2909.5913 5749.1963 10366.3528 72506.5028 6584.4858 9624.0067 4824.3253 3070.0157 3070.0157 4462.7344 9515.1022 8401.1142 35984.2531 9739.1097 6080.7955 4712.2664 10380.8965 4285.7543 12948.047 8859.3084 13206.1473 4963.9156 6585.217 5903.7143 3374.3871 8019.8817 300390440 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7592.123 5848.2776 5960.2213 13233.5734 42086.1325 15339.6509 10000.7528 12836.0759 8280.6142 9419.473 116604.2986 89862.2128 18974.53 12347.8197 37553.5968 37553.5968 19951.6367 56488.4174 8640.5155 4186.4517 11177.8481 12537.1566 210345.6183 14351.9529 18137.8366 109737.5559 57588.1241 8312.565 17566.1542 25884.4695 18091.583 15036.0235 16196.3868 28636.5184 256362819 alginase Carbon Cycling Carbon degradation Alginate Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 35607.6558 97445.8234 16829.9345 26177.9331 9017.1125 6821.9985 19292.8828 6473.9683 12999.1881 19526.2731 232037.1431 11474.2032 9343.7334 38579.5837 11017.6672 11017.6672 5607.341 31738.7404 22199.8017 14016.0319 18833.4727 9599.1141 11073.9326 26224.148 22895.5018 16515.2205 34499.2146 17150.3201 13876.5791 5427.4264 17774.661 12747.3506 14713.2109 9645.0174 158138839 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7120.7188 4525.4868 2551.8453 2083.3234 4951.7707 7459.2233 2757.285 97745.0702 5879.4298 5395.2766 2156.3793 2156.3793 4125.5004 6823.5393 5492.613 5569.9944 5449.4338 4021.4629 2118.6651 2932.022 6789.9044 2873.5051 9881.3865 3905.8015 7128.4369 3290.2277 3041.9985 10966.1186 6468.5801 91690045 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6406.057 9871.5843 3187.7327 11899.2075 3150.6476 8196.9015 8375.5307 29166.4772 11698.6639 11873.1302 11873.1302 3866.9591 6693.7855 5297.108 52740.2995 14419.226 6691.2682 12757.8782 12990.2749 6288.8736 5315.9529 4371.45 3001.9994 3415.9587 325550151 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 125277.2865 2757753.4228 709711.3153 6307.9941 8950.5757 22684.7602 6955.0334 16005.6071 7650.2838 7383.2698 221090.0955 14031.067 12095.6899 15350.0277 16884.671 16884.671 8860.5608 14048.8711 14396.5368 24096.5158 12984.8577 10329.6345 13249.3036 9040.5694 29547.123 6998.3329 23591.623 9790.6681 16103.2457 6485.9297 9252.487 10326.0153 5225.0166 64492.1813 337730730 dsrB Sulfur sulfite reduction NA Candidatus Riegeria galatelae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;genus:Candidatus Riegeria; 6833.4938 4865.7434 10546.0702 17219.3499 5772.5442 4227.0351 2556.5048 3905.0102 4730.4424 3611.6561 130541.3127 6398.6194 4445.5753 4914.0265 2237.165 2237.165 4091.8798 10266.8013 6721.8089 4996.9387 5823.4423 6341.7793 2505.0168 5380.3097 8157.7864 2560.7549 10502.0448 4787.6537 7519.1895 4551.9264 3057.9428 3579.5071 3155.0042 7354.9161 343782873 nosz Nitrogen Denitrification NA Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 47581.2655 16818.104 23214.8131 135987.2525 42332.3925 13608.2903 21745.8091 27182.6857 14643.5709 98902.5338 27601.4337 13369.4263 525530.4118 34049.234 35800.9231 19840.5078 22290.92 22290.92 19678.0578 39066.1071 26820.135 26251.5422 72099.3438 115605.9439 13626.6127 16402.6258 33032.7196 11813.5178 52534.8382 34142.3931 36718.2658 14394.4134 34087.073 20777.8359 17007.2884 81304.2648 119391561 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14677.9389 7984.4329 8162.1947 12056.7036 4968.6638 7477.9942 11725.7827 12859.0646 8182.5709 11091.7443 5925.0921 272466.9017 12650.8719 11220.97 9506.3037 6853.5512 6853.5512 11055.3997 20764.2646 15401.1351 32789.4021 15271.544 19454.1627 7595.6154 8807.4764 17487.4688 6664.9259 28386.7597 16528.4308 20467.5363 6142.8893 8634.2296 10574.6345 7208.5596 17811.9561 251772186 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 7746.6351 8325.753 8061.3083 2374.5108 3255.925 12111.2869 19905.1122 2884.5371 203694.2355 15074.2715 6573.8416 9114.7807 3284.5105 3284.5105 14157.404 43310.8416 18856.6965 9182.3316 17266.0797 62472.6844 7693.2648 11407.6849 50523.0506 9947.8025 35170.0081 11654.083 30280.1367 11115.2419 19697.8652 14287.6259 7815.3928 15071.3342 154155244 tfda Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 15530.0884 13600.5635 6355.7231 11815.8225 8091.6635 12887.5735 22275.5885 18457.9397 7053.7738 334306.3256 37208.6585 18406.9225 46851.2647 7476.2627 7476.2627 12254.7232 21351.3874 15456.9681 16665.9067 16809.3761 20993.0763 12412.43 9211.9492 20593.8759 8879.7749 29433.274 60278.811 17537.5652 8442.1019 9684.2853 14256.3945 15080.7957 26587.2385 170653130 pgk Carbon Cycling Carbon fixation Calvin cycle Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 144060.0593 95435.8541 44892.6369 93161.2731 78872.8495 54736.7229 84560.5423 67039.6792 62747.2972 57279.6982 58396.2381 2722231.8141 83330.3603 89545.4485 148576.7488 129939.6658 129939.6658 110506.1137 139923.0258 55232.0529 74431.7285 113310.7428 59247.2109 46494.6203 94173.3489 156837.3086 49511.0471 178064.3599 97750.263 134858.3612 40573.8006 66244.4722 71461.6418 47887.8714 107495.9477 90106259 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8383.4475 12279.1547 8897.7916 6006.419 10443.0028 4349.3269 12250.2508 4180.3728 28787.5956 15899.0688 15907.8381 173916.8112 51245.9822 11659.2324 26542.4672 13490.2666 13490.2666 45915.7346 20641.0227 14006.8807 13815.4056 14670.8811 24310.8158 8555.2769 31535.1024 29080.2998 13358.6876 25036.2024 11914.838 35025.2594 10564.2149 13089.929 17722.832 7354.0056 14622.6391 356690623 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28695.6316 4161.5455 15776.3013 3427.5998 8966.8626 2893.8795 3491.8908 6183.341 6671.0434 128994.7099 8102.8661 7311.0387 5884.5789 5026.3596 5026.3596 5824.5871 11856.8549 7708.4642 3955.4803 8104.051 7564.4162 3258.2952 5082.828 14355.8393 3810.8812 21487.6712 20444.1401 36825.0639 3434.463 7029.4565 5577.7374 3605.05 6850.4988 374601989 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 8665.9993 8084.0687 20578.2501 7286.3897 8969.3001 9688.9534 10217.6745 4541.0531 46619.3296 92831.106 6339.2028 4778.4146 6017.4906 12304.4964 12304.4964 12163.4804 8420.021 5900.2532 4770.8018 4493.191 3057.0711 9771.9818 15808.8881 18900.6421 12132.3542 13442.0738 8179.7731 7947.3129 7805.1184 7378.7998 149923448 ppx Phosphorus Polyphosphate degradation NA Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 22473.5337 3508.2827 2995.1374 28135.6677 4213.2913 4682.0747 5371.8398 10641.3398 3211.3339 3211.3339 19728.2302 5400.6279 217060.6071 7055.068 3659.6288 2441.7055 5173.1906 8430.6006 3638.6663 2736.3302 3311.1566 6068.8846 407284084 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 41313.4256 18004.1198 28919.5168 28577.8411 33598.0183 12793.8188 23815.4515 34187.1737 44979.7465 69668.4561 67436.882 47872.3118 1110336.7261 35469.6791 56622.1733 47716.7622 27431.9595 27431.9595 27914.0237 48995.1927 36049.7098 39836.9572 50157.6107 64336.8714 39000.2524 27262.0974 40502.6423 23427.916 82027.6895 41479.14 45461.4198 29704.2218 46039.9977 35339.8904 26892.8768 75488.6384 383453559 terc Metal Homeostasis Tellurium Detoxification Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 19101.4099 11099.2286 19161.5983 15439.5313 9477.3349 7535.0612 8265.8222 14344.0514 18971.7095 22064.9012 418458.4938 31076.9798 19341.5491 13583.2322 7412.527 7412.527 14011.1985 27690.4106 25954.3109 23453.8804 21999.5373 17989.1541 9157.8254 8609.6966 18590.0765 8735.5581 37300.8059 11585.7849 22183.5859 10804.2394 12637.7328 18904.2309 7951.9615 74403.7441 378763716 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4860.6483 2459.1601 20461.7604 8264.3185 5290.0176 10196.4655 298118.5201 4688.0438 5385.6236 6222.3423 6222.3423 8345.0451 4722.2567 4783.7246 3528.8628 10067.9127 2668.2398 14151.151 13025.0986 11629.9516 3044.9137 5897.0181 5543.0572 3280.2997 7792.4907 89512536 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 32910.5416 18137.5915 6801.1463 68519.6711 10130.7421 8347.3136 132986.8728 29678.0301 20802.1617 20092.4901 129417.8939 47476.8412 13178.9583 9632.513 39125.3098 39125.3098 11443.3765 25323.3416 32644.8312 32787.8907 31976.0373 11973.6544 26135.5176 25708.261 20742.4567 10228.8203 36147.6123 44126.4032 35243.1608 10178.2883 23484.3817 34395.9043 14607.4857 22781.7513 295680847 cysI Sulfur Other NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 22587.4168 4645.1811 7942.2476 8062.6887 7860.6003 5706.8 9120.8263 11780.9771 9645.169 103656.5448 7216.4964 9217.6153 6465.0802 6465.0802 7038.1667 18238.8335 8682.307 5493.2312 19647.402 51143.5924 4298.6035 5339.8006 10627.4939 9848.0981 33074.5511 8608.6941 11792.7028 6341.7397 7403.4951 7707.5818 6864.1834 21727.6906 302406819 pme_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 149360.6373 12624.9155 9556.8611 356898.0176 9121.0856 21914.673 31376.4184 12862.0006 17936.5207 35215.1479 25631.3748 40370.6603 34567.6649 82636.9406 53165.5898 53165.5898 122598.9506 18754.9751 21190.7236 20449.2439 30169.9922 32334.0351 14501.3843 104497.6372 47646.3488 28513.9405 24210.254 25512.9378 36727.3075 89055666 PRI Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 227478.3028 42795.417 208538.3128 474435.8745 863122.4721 115139.7288 146336.9234 462717.9252 97026.6744 286552.4351 390897.1097 217687.0756 11089965.7386 536475.057 235358.6922 561840.1963 299392.3394 299392.3394 155059.4533 489083.2452 217179.4001 227515.2559 417294.3217 392713.3262 247475.9549 131341.0079 238372.5331 187637.7391 574493.5693 296664.3594 593576.3189 300410.6728 234499.0244 237629.1276 138235.3343 476927.2005 167355665 tehb Metal Homeostasis Tellurium Detoxification Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 6031.2699 16363.5 7144.7223 7896.2736 4426.335 2291.7628 11415.0576 5934.2369 7178.9791 2764.0145 104700.9978 5325.8666 4369.1932 2907.8905 2907.8905 3378.8332 8420.7416 6136.5238 5375.0335 11459.8434 10686.5518 2512.5121 12293.9837 6860.6121 8482.2148 3248.4162 6920.8955 4061.6915 3943.4742 8423.2282 336096613 cysJ Sulfur Reduction NA Oligotropha carboxidovorans OM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 878811.7945 914290.3611 86156.0191 32080.3073 52474.0851 97833.2498 62795.4293 56317.1976 60454.5574 60775.0197 163754.9519 1252556.2521 179665.7441 163564.2756 56026.1265 109401.132 109401.132 76186.3401 121436.667 122395.4783 119827.2454 244126.8477 119764.9394 94900.3934 131492.4672 229703.218 296875.295 152052.39 85568.9 110401.7798 78764.9647 87596.2042 210094.1662 41914.497 218686.3155 325660425 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31466.4415 34618.6379 17004.2347 56509.7064 25873.1907 10628.1505 35083.9934 22902.6859 14586.219 31836.5949 39959.6878 17870.5299 1013450.5293 53891.445 37123.2009 34265.2298 15233.2162 15233.2162 21122.335 57205.5942 37962.8206 38866.2746 42653.3345 60836.1567 18830.923 16069.6296 47179.4702 16309.788 94875.5597 40528.037 44674.0614 23974.518 26829.0778 23873.452 21487.5255 79653.3809 84384684 xyla Carbon Cycling Carbon degradation Hemicellulose Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 9666.3997 5195.0524 5499.7972 2680.0533 5198.3102 13866.3822 6694.5874 5386.6485 6812.8823 3337.3012 3385.8976 2803.7942 133778538 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 16042.2252 15235.2384 15004.5811 17015.0431 74415.0516 19684.1983 5065.69525 9905.8904 5601.7683 10003.9284 19470.1565 289866.9365 16415.9453 27714.972 20654.933 20654.933 6517.69555 28774.0577 9150.2136 5888.6279 25198.5826 14447.7476 30328.9613 6542.4745 58341.9358 5245.80575 9845.0269 66801831 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38427.6174 7969.415 9531.9425 10435.4983 55290.0103 5952.3487 7385.3315 8929.8101 43672.7565 30932.5216 174981.3694 29462.1993 21231.948 10240.9066 10151.8602 10151.8602 69632.3469 22572.7227 26469.3657 52298.8729 73032.4583 19111.4863 129687.4762 12231.5733 18030.4492 6498.4248 27484.9949 29117.1979 22648.4902 8381.5743 19328.082 28925.1123 10683.1056 12691.0772 390126181 poba Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 57900.8519 34771.9147 29660.0668 35705.36 10417.1384 18011.0427 27256.9483 14578.2459 25265.3077 30156.6217 32364.0502 3371883.2988 28053.7786 24240.4435 39475.9315 23390.8768 23390.8768 29104.5884 33559.148 20037.8885 24589.2996 50116.1307 45952.7653 15885.099 17758.5444 41487.9141 16366.0682 74837.7153 17673.0221 36637.7382 15763.0581 27050.8254 21304.1124 25310.0696 62867.9778 114537963 fccab Sulfur Sulfide Oxidation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 10171.069 4201.0587 3830.3152 10919.7259 2780.0639 13176.0729 7806.526 5305.4402 209787.0399 20909.9019 11456.9194 54459.8571 10077.9715 10077.9715 5348.3019 11454.8531 9095.7803 12080.2319 5676.571 11028.0526 4367.6931 9535.0495 25106.0023 5720.1243 96060.2265 5496.4708 14842.0269 4576.1689 6546.718 40708.8913 4053.9339 5942.6797 255110080 APS_AprB Sulfur adenylylsulfate reductase NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 39087.3946 11847.8119 18500.7671 25520.1809 9752.3271 12226.7833 15967.9622 15797.2686 7945.3173 37359.1624 41321.6133 59022.1308 378024.0263 32197.5047 52268.0307 28544.4812 59846.6373 59846.6373 21663.2165 68407.2979 24260.5815 32126.752 79291.6109 20139.7145 22546.0188 18437.6521 20510.8891 19123.5255 110497.9116 28615.4945 74848.745 11510.1628 36525.8183 43592.9375 14306.2104 18369.0428 320147376 amyA Carbon Cycling Carbon degradation Starch Treponema phagedenis F0421 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema phagedenis; 21682.898 12985.6514 6557.4239 19557.2067 29249.3297 27812.4591 7270.6709 13521.0254 37438.1933 15711.0533 241072.7467 44190.1708 12414.8266 12267.6552 33456.205 33456.205 6359.4918 40741.5067 11475.6046 16559.9274 29225.2881 14665.5985 21434.249 15553.5044 32024.47 23972.0893 69083.244 8051.9962 17582.6182 8495.3318 16646.7874 19034.0718 8062.7243 214296.5088 322369294 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 23982.2824 11528.3162 2660.9003 2545.0699 4512.6847 3441.1277 6470.4991 7257.1814 2648.2093 5916.1168 5226.6589 2264.4453 5526.9447 2661.3242 6136.665 345303302 mer Metal Homeostasis Mercury Detoxification Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9391.0884 2322.1577 3279.9416 4422.1383 2820.8262 2820.8262 2413.6424 5133.0137 54412.4108 372471961 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7201.2715 5099.1004 22372.6974 21046.6335 10132.061 3043.9111 6587.2611 5739.7699 57246.6789 4425.3221 4244.0182 5874.8087 11561.388 11561.388 14341.6466 6293.7741 17147.6245 41925.6287 3491.6157 5521.0559 8563.47 2947.4433 13567.9908 33356.5048 32351.7274 3371.9047 12516.7497 7035.6486 3724.9579 322718567 phenol_oxidase Carbon Cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 10653.5039 10757.0842 15023.6247 45474.4524 10592.2216 4938.4325 14544.9047 4005.421 13588.8589 29818.9226 37301.8972 219341.3188 351559.3767 35423.8797 33170.2265 28993.3176 28993.3176 13320.1163 259238.8951 14971.1653 14200.6697 29178.2775 7978.7298 5570.2786 28968.9364 95663.2302 10252.3149 34384.5996 31335.8968 31249.8382 14508.5592 18861.6356 17420.4948 35337.1623 17424.2919 162282386 nifh Nitrogen Nitrogen fixation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 78741.8701 74427.2373 31554.4512 31108.2256 23431.7587 26132.7909 28320.3514 57652.5299 41546.0928 32168.2182 952803.3452 39278.9123 36509.28 100903.4133 27415.367 27415.367 24581.2682 36031.3418 18035.3131 46908.3597 40125.7584 57377.8902 19880.584 32520.1918 39151.8937 20351.5149 72860.1277 33587.7124 52429.3127 18799.6754 38411.7844 36242.9446 19280.0355 60851.142 296114551 PRI Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 26529.9446 38275.2318 15665.0836 25352.6237 6128.4138 11973.5261 15455.2179 9719.1328 21435.6508 33482.3016 49842.3339 490112.7926 36916.5026 19702.4776 24895.1153 11104.437 11104.437 15076.5212 34958.2023 26089.5343 34845.7202 30853.0588 27409.6713 70068.3161 18238.1136 34895.581 9010.4035 49033.9523 20571.9362 29790.4164 11138.3543 18003.6269 22863.7797 13172.9239 39863.4467 111073751 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 20020.6254 3081527.0665 2806.1516 4686.9493 6251.7058 8804.9281 7223.7045 127336.0577 10978.6772 7140.7111 9952.4264 21547.6477 21547.6477 4202.0974 10419.0954 5588.4205 5735.5437 12528.5015 8137.5947 6146.3802 12849.3136 5163.7931 19578.0114 6013.3823 10172.2964 4166.7571 16155.7404 11570.8065 3990.2089 5757.9125 315312361 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 31973.8063 25123.7981 7598.216 11370.5695 11225.012 7620.1837 12835.2109 27964.9722 20104.5588 21303.4607 10824.8252 237927.0893 12687.4993 13700.2473 30292.272 12045.5632 12045.5632 11385.9879 22418.1175 18005.523 10999.8684 85019.961 15573.1153 40986.4114 12754.8723 25404.1636 12521.7863 36266.0861 11477.7586 17700.0612 11418.5581 15624.3102 15780.2751 9355.9969 13609.8806 46115742 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7182.846 149637.6517 7929.3336 3564.766 3922.7215 4922.9008 7226.1534 87839.4295 10701.0352 4455.7333 3807.2981 6352.7111 6352.7111 5809.7358 8867.017 6050.7631 3585.444 5115.6465 7925.6213 2363.3874 5270.5122 7797.1046 23072.9782 9042.0061 4854.1667 9311.1109 2767.1383 3159.4708 6063.6255 4119.7333 6864.3592 297198435 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 20995.2695 26814.174 16521.2373 68813.5418 34313.3637 10114.5281 14620.5825 8866.5208 18318.9719 20562.5745 11314.021 385707.8541 19811.6536 23279.7336 39828.5398 15775.903 15775.903 11676.5479 34750.1402 25388.2087 32101.6443 29796.7275 19461.1455 11119.172 13047.7289 34596.8068 23369.5676 47212.3536 29015.6301 37078.0107 9084.0643 17084.1416 18551.8671 13386.9432 28266.6995 2980982 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinomyces sp. 40 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces; 40799.9173 25159.1372 11133.9969 56769.6479 13404.9917 10473.575 18614.2609 21274.3334 23739.8264 21707.6967 20281.5703 307695.7381 22246.4196 33599.3756 64229.2228 34522.3981 34522.3981 13251.7644 40849.1246 26345.7418 35146.3236 38327.0047 21809.5214 13003.2095 15021.7781 27977.4506 15486.2097 48083.2259 32199.3006 38185.2401 60694.1431 33143.2376 21235.2151 20398.4733 41457.5881 117648641 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 43892.9574 12117.1773 148574.0529 14529.2653 19353.2351 5189.7013 17503.2202 8017.4015 13241.8904 24386.3033 45360.1752 395481.3181 22007.7162 45100.5865 99900.2297 58294.4313 58294.4313 21449.8591 38889.9249 15156.642 89437.6487 62985.9477 58181.6035 32111.9603 44259.9288 51476.8361 30217.3183 37227.2926 83860.6027 189043.1087 12511.7286 129295.8826 66675.2226 74179.0229 77058.6231 225572709 ppx Phosphorus Polyphosphate degradation NA Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 9902.3497 5128.9602 2323.85 6796.4843 5654.2215 6168.7874 10003.21 6286.6555 2519.335 7967.1572 373460182 amyA Carbon Cycling Carbon degradation Starch Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 4422.8549 10115.9418 5245.2288 3842.5576 3842.5576 6800.5983 6407.6438 3127.2001 32895196 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9417.6602 6140.1551 5922.8457 3792.9328 8715.8432 731878.4811 4213.2019 9296.4762 29014.4161 5810.0622 5810.0622 18357.9472 6454.1095 5460.3301 13188.0538 9300.0088 4520.5478 4797.5787 10516.3966 2923.8432 8631.6925 5762.2845 9252.6447 5695.2353 364505619 hzsa Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 25290.9845 34351.2853 13032.1106 29504.0128 10905.8163 15279.1441 23315.996 11183.748 19177.8426 19412.102 22772.4859 609563.7979 51069.3958 45152.0472 45786.8541 27774.3267 27774.3267 17315.6041 32237.8734 25917.6914 353849.703 120036.5399 18651.2511 40273.1944 20130.4651 30529.3675 21758.3489 57341.0102 84231.1827 36575.2829 19597.9223 19513.3505 52881.7133 421532.1595 56081.0074 94984647 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 6712.7191 5013.5137 2527.2588 2527.2588 8527.2265 4974.1099 2283.4736 6855.1524 2875.1834 254514243 vdh Carbon Cycling Carbon degradation Vanillin/Lignin gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 19038.3954 55870.6707 7728.7559 5053.2552 11487.7522 6289.7968 12956.4958 9068.6013 6931.1208 10951.6331 7902.2966 174255.8349 36516.3151 22346.4923 5820.6738 12502.4757 12502.4757 3614.9932 18363.974 12371.9141 9827.6949 18164.2811 54875.1209 5258.3207 8454.4662 22023.8244 7727.9367 36754.711 7772.9311 13468.0149 8025.2938 11152.8257 17042.1255 7615.9279 25067.1416 88774234 arsc Metal Homeostasis Arsenic Detoxification Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 5378.7535 4797.4508 3696.9923 3833.9601 8596.4527 5303.442 2644.3323 3071.5484 5324.6026 3170.0406 3815.6439 3819.5489 3065.1695 157381244 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylellina haptotyla superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylellina; 49055.4573 106694.3843 61854.4839 42732.3324 13014.2878 24668.6233 32815.7326 44489.7484 25917.1924 37229.3889 37389.9297 866947.9032 97445.2887 137781.2192 144426.0434 44888.7145 44888.7145 30574.5667 81369.4053 42617.3367 63984.0396 55000.1915 38364.0952 50457.3296 25021.4014 60711.4388 24027.044 147461.1676 32873.2012 47992.9728 16206.5883 27066.0266 27176.0206 26336.0764 35275.5449 302527086 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 20335.2173 14781.7764 28544.063 37619.9832 134315.4501 157317.2826 19928.9228 100654.4002 6054.8626 23894.6607 70164.0793 21167.4419 514496.5294 34641.1026 49748.0125 51453.8507 39163.8639 39163.8639 26069.2055 54244.9647 59466.7727 27665.3283 15035.2385 21855.9571 18240.3795 37650.8038 113141.5135 21390.5887 120857.7644 84285.5758 93654.5282 32517.7144 31272.2154 48951.5459 13846.2457 85848.1152 294677758 nifh Nitrogen Nitrogen fixation NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 7944.7747 9423.1773 11768.8111 4607.795 4158.4268 7111.6397 3853.6086 7945.0681 8786.8215 4093.8684 169418.6781 9779.5997 57962.2454 14285.4857 10513.513 10513.513 6519.6115 16424.6134 11540.6205 6368.967 9305.5861 10544.8065 4530.1822 6320.8725 16423.5313 5599.8286 20256.1214 16700.8376 16815.9843 6915.4622 7491.9929 7835.3944 5181.8108 9983.5412 146195928 atzd Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 28151.102 14408.7884 95797.6072 25654.8331 59748.5624 78862.0947 44325.3521 32109.3649 20315.1701 83259.5055 26512.9972 664395.0216 22965.3368 24130.09 32009.5681 24348.2132 24348.2132 21543.9959 42860.0138 18938.6196 16869.9007 24849.9973 20082 10066.0977 21327.4156 53378.6655 18415.2634 50063.2734 23889.5406 29583.4125 19945.0604 17281.689 16029.5988 11316.4791 18371.4512 422313927 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13716.5119 2089.1203 2827.4671 2202.9891 3593.756 2544.6912 2544.6912 7582.3636 9257.9156 4853.3608 3220.7023 2816.8653 7903.3653 5648.2517 3360.751 7252.8236 197103544 linc Organic Remediation Pesticides related compound NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 5791.6564 5987.6221 13936.1781 3959.5344 17300.6057 3974.3448 4315.0838 4292.1827 1828310.1465 3724.322 3905.2178 11876.6945 5643.7409 43476.4987 9564.559 9339.7729 7095.0722 2518.6098 6364.3198 34368.4715 99715.3602 13656.3607 7634.3386 6405.1395 5953.2361 6858.3725 11119.9829 7071.9997 168192786 soxY Sulfur Sulfur Oxidation NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 21105.1886 51412.6272 57482.5651 47439.3447 25710.6037 14635.0009 20899.1291 15213.0385 15278.1104 34410.5344 27572.9569 411262.5211 20371.1553 34743.9937 42933.0988 54341.9417 54341.9417 13187.3524 70054.1537 36778.0661 34570.4106 50627.6173 22127.6507 11779.4077 27797.7917 28828.9157 26005.4746 86708.2986 52156.209 36521.2947 9385.2553 36595.6389 35120.0552 16515.2923 17597.3884 261352230 nitrate_reductase Nitrogen N Assimilation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 4661.9779 39824.7409 8786.1574 3529.4776 5282.147 3729.5127 4034.2578 2596.6217 6378.3146 5033.4195 3940.103 7109.5964 2309.2583 5436.2195 7761.9582 5115.1119 6019.8613 2729.5716 5511.0659 4853.4615 2498.8546 115397681 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8116.2169 8114.336 8293.5955 5609.3389 8794.4259 3770.2699 5624.168 6651.8891 2972.5295 150364.8407 14272.0943 8891.615 4345.0142 3710.3326 3710.3326 4812.338 13241.3001 7364.9341 5879.8321 7916.4765 7673.9447 3108.9101 4506.3484 15583.9494 3118.3231 15440.8008 5923.9799 14724.1269 3620.2764 4722.1885 3437.7991 7875.8056 14525.892 229320879 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6067.0067 9501.9317 14414.6647 7301.5167 12767.9026 6297.2495 2485.9078 6378.2738 7102.04 3186.3329 160384.4799 8109.9704 10150.2311 8778.0208 21604.6438 21604.6438 7342.7001 15844.2883 15023.7075 5335.2001 6306.2787 7969.1949 4192.6737 6072.5564 17854.7755 5945.5434 24761.0505 13378.5185 13490.2194 7687.0993 12118.1126 6597.527 6643.747 10847.7926 365888612 bphc Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14595.592 26913.713 7290.85 6361.2502 8542.3295 18217.7799 19388.2413 37279.0542 4278.2626 11519.1653 22864.2647 55371.4799 209157.5136 13601.1132 10693.6106 13853.6219 22355.1214 22355.1214 10694.9064 15026.6352 7339.0669 10737.0432 20362.6629 10586.9105 4753.351 6526.5275 31489.5854 19969.1469 19785.5411 15847.6228 17984.7108 8283.784 24084.4525 12539.4308 12472.7914 22670.6138 260402705 atza Organic Remediation Herbicides related compound NA Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 8908.356 6487.3817 3358.6238 49911.004 2158.2921 3740.4596 12624.5729 5149.4486 6200.169 6200.169 10068.9453 9992.0652 5481.348 5302.5066 8736.837 3224.4593 5523.4625 9045.4067 5864.6782 7787.7502 7632.4153 7012.7779 6550.5105 5276.2686 3731.1442 4195.4119 6369.2256 379989845 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 52983.418 26297.7354 342598.4681 32432.3339 9734.8833 34681.3397 21413.388 42330.5082 32148.5729 28970.3246 113611.1422 33197.2971 4558620.7985 44327.3793 101734.1 63325.0747 89090.8851 89090.8851 498870.6987 52869.9586 28241.2691 26702.9637 96473.789 38610.9509 93170.3437 40582.0719 47971.9899 57090.5633 97093.7392 70447.7205 70465.9554 25376.5851 25696.5649 429205.5156 21798.5036 33920.5136 334131546 PRK Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 6045.1044 4779.5097 7783.324 3287.8492 694090.4057 3116.3683 4456.515 2784.4226 95236.6694 9425.8846 5614.8018 8105.3256 3463.2389 3463.2389 6117.5457 11836.8015 8677.3046 9521.3413 16329.3653 6982.9602 3058.5209 4841.0384 11383.8547 7600.8057 18303.4111 10651.1569 10705.7478 6023.8448 5787.1532 6710.4811 3312.3497 14979.092 209401772 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44417.1429 32022.3975 79264.818 41155.3101 14299.415 25962.7651 24938.9281 42813.9382 38901.0685 45726.7767 32052.4879 658756.8317 40580.3532 106029.9172 38632.2798 34278.832 34278.832 25875.3423 61431.3138 33795.7327 38068.9796 63736.2925 62369.9948 24434.6125 27782.5739 68479.2475 19461.6117 110664.01 53262.0817 52832.7435 19891.8101 31553.5771 29343.9566 35931.133 44296.9994 73763028 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7194.091 36465.3579 3863.8627 13708.811 8043.2595 7026.5879 3879.0869 95699.5276 3982.0594 4846.9029 6930.2307 2772.8691 2772.8691 3174.8028 8870.9809 3702.3786 8386.6469 7071.4841 8015.6536 2590.4892 11897.8134 7478.9391 2638.5178 10296.0674 5209.2994 5691.406 3392.9905 6300.2337 3256.2617 5702.5955 88863487 nbac Organic Remediation Aromatics Nitoaromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 201511.3173 97343.7173 106350.8819 215945.9158 109384.5052 90037.2623 231927.6172 337588.4231 235771.7964 180741.7232 173073.2375 130716.1024 4026799.5866 203572.273 301791.4822 326343.8893 166768.7471 166768.7471 99360.2265 156858.6814 88545.3988 145504.4446 189526.254 229785.4394 107785.8584 105462.2007 163526.6148 241104.1122 519765.9893 139411.9143 178667.1661 120500.7141 91996.1179 127018.6279 71314.7637 602577.4176 91807156 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 13043.8286 11367.6399 3997.1474 2163.1923 4301.9425 6434.8197 4993.2488 4222.6771 2583.011 7549.5716 328530015 pme Carbon Cycling Carbon degradation Pectin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 5199.3111 4793.849 333606465 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11911.0345 4077.4636 3273.7656 10365.4999 6005.9881 8806.7646 18571.5143 176794.4144 4474.1572 5541.8946 23791.4899 23791.4899 3106.8684 13680.4994 4039.5638 33010.5752 28224.8631 9030.3475 6657.2743 8187.5346 25663.7835 7176.5931 22080.8993 5251.6946 7564.7609 5658.1926 5231.7522 12276.1091 5943.212 18388.2776 68164622 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13875.6308 23387.2693 4426.8046 15005.6789 6006.2021 23539.9136 6342.2374 11332.6383 7290.1855 9162.8801 1382295.6522 5146.2513 8685.348 30083.9146 14478.5416 14478.5416 3628.0654 51877.3727 13403.3932 10355.6373 18631.4316 10370.4268 14588.584 17386.8486 9460.0861 57330.7514 19234.0518 17195.9131 13445.6783 4209.5396 9004.0578 10342.0848 148045.229 45918.1899 110816769 tehb Metal Homeostasis Tellurium Detoxification Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 13270.2222 2617.3985 3435.4588 7549.4403 11519.8246 27119.6203 8201.5317 4273.362 2116.3621 18964.9036 11157.691 22309.1497 9274.771 4778.1342 22063.7249 2015.1188 9855.5837 238599616 xylanase Carbon Cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 9611.3096 20815.5584 7910.4511 6204.1638 49439.1356 3286.2431 7864.199 10713.4557 4824.4963 302989.207 9061.2122 8035.829 27702.4959 4434.3503 4434.3503 5179.2844 12101.3361 11366.9086 10561.8127 16619.3189 12078.3574 4344.2702 4268.3874 10882.877 5054.0718 17464.0647 20748.1002 14546.5823 5555.2011 10849.1204 32537.3266 5217.0409 10341.7905 110826476 aps_apra Sulfur adenylylsulfate reductase NA uncultured Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7263.6596 8905.1409 3586.4282 3603.139 2727.9442 3425.1289 5452.5082 4663.2471 56280.9945 4209.5006 2934.3463 14060.0342 5965.3483 5172.6888 7148.5566 6876.0833 2478.3828 8649.7702 2464.3633 11113.0142 5525.5889 5470.2441 3192.0831 12252.7127 4686.2641 5872.5489 7233.7456 198282309 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 22785.7768 450359.688 9875.0003 2719.5515 5102.9185 4026.6819 4166.1297 8391.7747 10967.1257 35279.9701 98361.0131 9707.5707 8682.1922 7826.5748 16707.9067 88813896 chitinase Carbon Cycling Carbon degradation Chitin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 5685.6237 4069.5892 4600.6062 3136.6671 5865.6931 4680.6736 124495.1989 3038.9209 83150.4834 5762.8627 4832.9674 2603.1289 2603.1289 4445.7838 8003.6385 3740.9584 4446.5541 4812.7894 4914.0469 3793.1386 2885.7919 7581.4113 9328.8863 3515.581 8032.2523 3067.9109 3641.864 4752.4657 5655.4921 5511.4838 352962606 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 482069.3756 14552.2895 128535.4548 158450.3636 998507.8417 54882.3387 58904.8263 72029.2822 199139.2509 78996.2551 110779.2138 114867.242 3235041.8831 299347.9981 196292.8822 252433.2011 170954.6469 170954.6469 107975.5737 141393.4757 123141.4334 120934.8869 103585.3764 186749.961 136157.2707 90733.9929 127356.8061 208139.5107 1308898.0393 606175.0166 128448.5149 84158.1463 107529.4937 118891.936 49767.6576 102612.6379 76573858 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium sp. KBC1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium; 9159.8512 12355.1569 7641.5718 6254.1288 50321.7883 3451.3506 8481.8444 10777.4396 4757.9753 207062.9963 10334.2619 7933.3193 7066.5761 4226.7356 4226.7356 5664.3291 13462.1269 14452.6449 7927.5315 14818.8558 13377.4856 4131.3122 4600.1752 12037.4678 30581.2149 19339.4884 8840.8166 13045.2676 3901.0039 6079.818 9924.8764 19230.9091 12791.8747 307745692 amyA Carbon Cycling Carbon degradation Starch Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 24148.6867 30793.3995 12743.7378 7586.5032 15994.0724 2822.949 10077.0671 8064.0443 9250.6436 33391471 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44388.1486 113307.325 12784.7294 34318.5492 13103.475 46094.3464 19587.8247 27926.2496 50504.1703 57602.3153 462699.0906 32607.6774 21425.4249 65411.6983 30006.02 30006.02 40161.4675 46730.4494 22613.621 74258.6999 80303.8609 49783.503 37374.4282 49848.3608 79183.2234 37823.4122 93504.5333 54929.5512 45994.9819 34072.6626 37495.6921 67531.1705 42286.1927 320277.9491 254417808 amyA Carbon Cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9803.4411 5377.2606 2139.6329 24313.4772 6207.5411 10315.2485 4391.0351 4391.0351 10917.3003 3652.5085 48680.9693 2452.9545 6750.9684 17779.2019 7000.2447 8308.5097 3738.0659 11017.9247 48150.6124 150835098 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 10093.1527 6030.7506 7544.501 2125.1209 2840.3433 4267.3496 46283.7366 64511.6579 5101.4375 3172.6132 6066.5543 3064.2734 4157.4879 3791.9209 7774.0773 5700.3528 2421.9183 3878.1335 2279.8234 319756008 gdh Nitrogen Ammonification NA Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 24228.873 18523.5832 188861.0978 7588.8192 10943.0861 18082.0013 17100.1775 22368.7854 20879.2223 39837.6913 23126.7998 237998.2894 20709.8063 40788.4693 15590.2719 29386.7658 29386.7658 8776.0935 32531.4183 15122.0286 11153.4823 116595.8185 12243.2006 217979.2751 21399.7221 39698.1426 9379.9396 127995.0403 11694.6303 22961.3141 16464.9633 17156.1055 20374.4286 12487.2345 78666.713 46307971 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9385.3808 38790.5855 7877.4344 2594.1776 5001.7465 11110.5818 6215.2689 8308.6978 25722.0721 173912.8882 11946.5148 13309.1462 13885.3612 5479.5294 5479.5294 14282.5303 8559.1102 6474.551 7624.4402 9054.4799 7404.7829 3974.3615 6523.4817 11256.6522 4340.0232 34903.1437 16155.882 11952.1469 3312.0716 5456.7329 29002.6019 7875.2801 5470.8246 77166331 urec Nitrogen Ammonification NA Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 4774.6613 2593.7482 3976.1522 3541.7134 9203.6109 5998.361 5182.5538 7195.9186 4867.5113 4425.0744 5289.485 5289.485 3266.5412 9095.7445 4964.6978 12902.2487 9684.6505 4444.6613 3965.358 4333.2235 6154.2454 3949.1051 8728.0106 3064.0559 3933.7094 9876.4844 3816.1513 374855043 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured candidate division OP1 bacterium superkingdom:Bacteria; 21548.6053 72810.5189 10486.7393 4445.0052 1981.1837 1981.1837 5209.6219 84254.0949 339502986 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 12229.157 20554.2478 7518.8008 5638.7109 15797.1426 9259.8116 8566.6228 7430.4203 19634.0756 9406.9349 151624.6206 10427.0332 13839.311 5704.8531 9583.8081 9583.8081 7191.8169 20312.5942 13545.519 10429.0751 18650.6331 13775.1404 9525.1397 6965.9323 13319.8303 9608.3993 35689.0292 9518.5654 13186.2586 6887.0274 11403.9742 10698.9589 20714.9896 18248.1399 222353926 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 58017.9631 20187.5577 19488.5977 117842.1513 27032.5159 27972.1639 47868.1177 71406.7717 14596.8063 53954.91 95987.3213 154532.0822 1726542.4053 42498.345 52910.7804 128584.3395 44819.5706 44819.5706 47833.2273 77182.5978 28524.5832 65745.514 127106.1879 46083.7984 51010.1826 63859.8453 58218.303 45363.2791 116803.3054 60548.0743 106641.768 31480.0236 45191.0295 53243.3203 51054.4932 72902.8998 974698 chitinase Carbon Cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7691.5138 5531.6376 6194.5873 3582.6429 2254.4088 9434.3431 14597.8696 4304.3981 186720.256 5289.0244 5492.6896 4387.2364 5356.5987 5356.5987 5962.4285 13543.8485 9554.8207 10680.3824 9039.0535 11115.4174 5124.9009 6438.0117 13017.6424 6448.8802 20816.9313 7959.4373 9678.1339 4650.5188 5668.0047 13593.4811 4980.0155 15039.1316 352682128 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 44999.1664 48758.0939 70262.5678 15020.7085 7141.7689 5692.371 20310.9169 12014.3518 30968.5409 139517.3496 24410.0301 279343.3544 100311.9462 33576.161 35237.3925 23593.2179 23593.2179 39565.3928 46403.5103 13672.3781 13716.1828 16371.677 56681.196 23098.4472 22616.1567 17641.7139 20083.21 43798.1182 57359.4724 30440.458 23599.515 19978.7473 24141.3997 28816.159 61105.9867 152991529 nosz Nitrogen Denitrification NA Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 3888.8817 5793.524 3001.0889 3550.8714 4966.4954 114640.3662 37389.2954 98654.1545 9078.7603 5495.4066 49886.8616 4481.8116 9136.4247 6807.3185 28136.9201 5629.8361 2875.3939 9814.5901 11925.0981 10342.1952 8287.1052 4465.1037 78286.1938 3739.7966 3247.7558 8135.3184 156869021 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 4064.4303 10423.5428 17038.1707 4810.2225 5709.2443 77072.1173 3905.0623 2233.4476 2233.4476 9102.3671 4891.3971 3934.2851 19167.3633 21186.7535 8415.3945 23331.8848 15812.4552 5580.9595 1846.1297 5193.2432 5834.1894 229360816 fosa Virulence Antibiotic resistance Degradation Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 38002.7108 11337.2774 23087.6921 22082.3069 5085.4804 13057.1363 14514.4403 24051.3487 12256.9894 16316.6204 16036.8816 186943.9925 11544.0153 18719.0925 54781.7169 26594.5794 26594.5794 13154.6706 33222.0573 17884.8318 64461.2471 55004.8069 37053.6904 14319.2974 25577.6408 22335.813 21173.912 180949.0059 30046.7832 36861.2734 7408.6032 24179.4 22411.8333 35065.5798 37505.3224 223961301 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 29401.9346 10059.7763 5546.6319 763576.3151 80556.5114 2760.6236 8477.5671 5541.0592 13366.3448 285628.3069 9461.1021 11607.2486 17170.623 14250.1226 14250.1226 5736.1656 30409.022 30778.204 17661.7234 27240.8019 7639.9083 3944.9418 7832.8246 7270.6945 70297.878 13227.0251 13252.0791 7247.3404 8744.139 9564.7579 8938.1261 15276.4697 13173341 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5182.4676 15729.6484 25913.7643 163797467 ppx Phosphorus Polyphosphate degradation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 63020.8269 8522.7519 9141.2591 18540.5275 24542.9256 30465.5156 10820.528 25781.8176 12085.3101 47987.8896 18577.825 475846.9232 25031.2797 23386.8145 20290.2384 26649.1501 26649.1501 10810.4641 135203.1491 30513.739 20602.8575 18845.233 13594.6213 12861.2825 12821.776 29714.8987 24603.472 66222.8028 125397.8783 27872.4273 12684.0401 19182.2441 20309.7142 16184.6068 84118.5352 29125948 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 83838.9939 21547.7883 30043.0615 59661.6904 247009.0733 7847.8146 23003.0418 32012.629 70643.1696 37248.6069 40371.2838 41537.8037 1410959.2248 41982.9224 41335.5368 63063.7761 75393.4162 75393.4162 28962.8037 71300.5989 91852.3344 27081.5359 86140.0633 54537.0232 21493.8224 58707.3878 39156.3634 20502.2574 83146.9443 28905.3609 88992.9676 22576.141 59027.5737 51961.8181 54373.6851 39169.6266 118463960 linc Organic Remediation Pesticides related compound NA Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10346.2305 11416.7561 4792.2372 1881.5528 353190529 mer Metal Homeostasis Mercury Detoxification Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 12044.3431 11765.6567 16084.4829 5380.7759 17510.0534 5002.4096 37776.2908 10356.5398 10844.1429 9871.9204 149599.1197 15133.5179 6961.2778 13108.0923 7037.2106 7037.2106 7718.6351 15145.9401 16159.3592 11586.272 22311.8398 12777.6229 9616.2721 7907.5071 11432.1609 10128.8676 122081.8989 15258.5401 12114.0181 5024.9856 17613.602 11628.2099 4530.5637 288281.5539 186472614 phn Organic Remediation Herbicides related compound NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 13323.8477 29559.1535 4915.003 9026.8071 53798.0216 7318.5373 8570.9492 5426.8625 24958.9129 13982.0124 13952.3967 1007353.9829 21133.408 17991.6762 12996.9205 7087.1435 7087.1435 25403.3636 32623.0054 6817.331 28693.8299 13884.4851 7780.1998 29538.5133 13152.5741 28277.1429 14167.4759 32258.0248 13702.3646 14704.978 24425.0438 12110.6313 23815.402 18550.3523 15382.538 259164816 amyA Carbon Cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 32077.4386 121446.5649 17924.7937 18695.4828 14620.1243 18170.0495 16117.8522 8864.7995 17307.2686 19110.6084 9386.4135 424189.2068 23162.3089 18440.6283 14319.1602 10746.3482 10746.3482 13570.4835 30906.0867 23640.3704 21897.9386 25471.0858 46619.1249 9455.2949 8561.5157 23559.1542 9259.0711 42234.0712 23683.4313 25727.0954 24582.013 15546.5156 14498.1011 11361.5588 33003.2181 189338574 aoxb Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 496977.1466 79820.4586 12319.3807 6532.4807 55928.5422 11566.0712 21588.8447 9901.3379 97252.4488 17030.5978 18673.1443 21916.3779 1264890.1567 21342.3467 314239.3625 46758.7461 15917.4887 15917.4887 13885.8247 37225.6934 18631.6226 36058.1068 51769.2771 13538.8239 77764.5879 17544.5422 38536.018 22416.3207 50971.582 81547.4596 29924.8773 11347.0689 21448.6155 19426.8216 22340.2541 25767.0107 247543895 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7334.6866 158433.9719 2505.6509 8399.4874 8233.765 187923974 cysJ Sulfur Reduction NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 20008.6453 2399384.4472 21982.1989 425014.4287 10607.9834 6701.097 32834.0293 2668.9095 31184.0345 25410.9365 17927.7665 338201.0114 34328.6178 51527.6597 50599.8928 14544.2636 14544.2636 77790.9826 210129.5203 22806.8467 99473.8152 39795.1088 8791.7121 44890.2788 28299.9887 13828.6422 26590.8653 80779.4982 56144.7933 48721.1622 30458.9068 29330.3432 99859.1866 13956.8968 25491.2245 332377186 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6306.0684 14266.8534 8938.2728 3610.5537 4721.4136 6388.2405 7113.38 14883.7107 5531.8661 172530.7135 5419.4373 6445.2839 12169.848 12169.848 3190.0768 12023.3218 5633.3071 7529.438 14494.3703 13541.842 6054.8691 29145.3157 9317.2815 3369.4449 44110.0052 7523.8549 10639.8149 5985.3202 8567.881 7343.0259 13934.7867 8021.36 90104599 cmci Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 118793.8553 22311.9533 7214.8086 14542.9475 8586.3265 722364.703 56107.9701 25533.4845 13774.8929 39073.3981 19209.4663 130905.6079 27526.5241 29018.7032 25655.3328 41500.0968 41500.0968 13721.4671 49464.9228 8556.6954 19293.3927 17507.0628 10207.3398 6736.4435 14664.7585 18242.8021 24019.7831 164009.266 19102.6617 42478.8319 10673.8437 11198.2097 27429.8101 25559.6848 15449.0438 353344424 amyA Carbon Cycling Carbon degradation Starch Rothia mucilaginosa M508 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 306996.0718 116046.9396 29011.0057 23806.3274 10376.6623 41918.3254 45204.1631 45224.3086 51348.1244 73529.011 40550.0828 2492966.3406 213508.4369 180624.1275 87776.1358 302714.6265 302714.6265 21848.6636 83218.9901 37704.6123 40619.0222 137778.0933 47420.363 37454.5493 34388.1238 131721.9742 30560.7147 212219.842 37324.8848 78609.5231 83042.7971 42474.1621 52708.2895 328387.1055 61510.2146 319804670 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 4943.354 5724.3885 4915.1699 23899.8482 5368.8084 74822.0701 2746.1938 74153.0403 4051.3509 4604.8247 14642.339 7157.9685 7157.9685 3403.6667 12615.836 5826.3319 5992.2737 28352.0168 4421.9649 9114.004 9373.3796 4388.5689 11429.9808 12030.9489 8949.7113 4533.1779 7498.8146 8003.5469 4816.7337 61964.3557 87198534 chnb Organic Remediation Other Hydrocarbons NA Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 197448.5243 138664.5282 47924.9532 50389.4021 21845.0229 44594.036 77186.8097 43882.2337 23137.0747 98796.4878 63645.7491 1666816.1884 52086.0804 61542.1536 121194.8188 102816.6015 102816.6015 34452.6533 64623.1956 39623.1782 42892.8213 72615.0439 42157.667 31631.9296 46213.3725 54470.704 49625.5637 101762.7614 196256.6873 100891.8303 40549.5098 44174.622 54312.629 47211.7156 136648.2789 407184587 b_lactamase Virulence Antibiotic resistance Degradation Aeromonas media WS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas media; 17606.6767 11538.1986 447795.0249 27048.822 14142.7442 6478.7619 10846.5225 18122.0961 11610.9384 9718.7643 10078.3637 264458.2868 15160.6946 17489.2051 29543.5436 10237.5174 10237.5174 11216.0677 14748.6145 11045.0039 10425.2153 18425.8722 16172.2738 6509.9686 8446.4663 21658.0072 8642.0254 25670.8141 12307.1789 17162.2601 9033.755 9956.791 12975.299 7350.1319 15018.2629 326544894 proO Organic Remediation Aromatics Other aromatics Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 9325.8295 12252.3992 4393.0161 6213.5152 4455.8979 2783.9872 26595.3554 17014.8951 6786.6361 12265.2927 22492.3351 16131.555 16131.555 3541.3618 9003.7451 4850.586 16311.0513 8617.4324 3478.8546 3361.1208 65296.7075 2243.1992 12189.9681 9185.7504 8345.9146 5297.2604 4509.5923 5241.5446 2649.0213 374661511 mer Metal Homeostasis Mercury Detoxification Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 82531.972 118115.8327 67134.9982 151030.1435 76223.8864 40161.3049 75202.4087 84860.9096 59247.8461 69665.9833 106793.1897 53675.1115 2255507.2053 110562.7485 107614.8408 106702.5998 46149.6186 46149.6186 48813.6594 132200.9283 80808.5236 75121.2047 96393.5492 189888.0032 53045.1744 38299.9745 100227.5062 34618.9738 143793.0375 35120.4134 90345.3792 38226.2203 58229.9092 49771.0505 50163.515 121081.4357 376372774 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4218.8633 71814.6535 13230.3313 4522.084 15303.4537 2085.2976 10912.6322 8733.8412 3223.0179 912891.0071 17497.3576 10104.5402 11231.7414 6558.3299 6558.3299 5504.441 11817.1248 13420.657 5048.0471 6750.2547 9695.5838 14925.7121 8130.1305 22384.2841 4001.4052 32310.1991 24715.8444 15838.5776 9993.5476 7672.4256 9187.3409 78516810 urec Nitrogen Ammonification NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11204.1641 13634.2917 3656.8925 5676.2078 14197.1279 5300.5502 6935.5102 74594.3993 6715.9471 11653.2953 8032.8599 8759.1954 8759.1954 10862.3209 15317.5207 4344.0414 5467.7043 41022.9878 9003.6383 12065.1123 65565.5567 3988.0351 23047.9396 8850.4431 10618.1149 9296.9785 9274.1481 21533.3753 7751.4432 98892.8285 62003517 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 144052.2584 18265.3485 60634.639 56992.8386 53422.9138 26836.8511 32398.5468 61725.343 82905.1981 133589.1688 55698.0515 81318.7595 1088756.5022 68072.5793 73982.0902 72321.2536 49255.9296 49255.9296 52871.2508 119586.1316 37542.8536 62144.3552 83020.5923 97332.9166 43446.3391 41361.9785 63123.5296 45242.0043 131071.7731 42566.1359 73774.5533 43148.8835 53181.7491 54878.4964 80703.9013 75089.1309 33864500 urec Nitrogen Ammonification NA Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8741.4799 4959.3593 5712.0641 8864.573 2502.2461 3102.1647 5261.8336 114314.3927 4343.7914 3441.8753 5556.2306 2964.4167 2964.4167 5725.202 5296.6476 7133.7665 5897.4019 2800.8708 2573.1865 8009.5291 2782.1912 7905.7242 3674.6605 7384.0898 2794.1822 5010.0088 5171.1393 1359486 xylanase Carbon Cycling Carbon degradation Hemicellulose Ascochyta pisi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella; 9680.2014 10286.3637 5808.7897 5037.0832 4108.0356 5927.2559 339271.7093 3742.2472 6165.2007 7645.0792 5386.0767 6147.0411 2689.336 2310.2688 12929.0285 7266.2527 6934.8147 1832.473 3074.7939 6335.0864 2984.3 172040505 dmsa Organic Remediation Others NA Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 22343.9659 2065845.7493 60825.551 12435.2402 6153.2816 6828.9771 5584.6234 6998.5567 16378.1636 8579.0885 2761216.9661 5862.0951 9103.753 5249.3326 6291.7918 6291.7918 13071.8309 57988.262 22132.2317 11038.5088 11681.2623 14870.0977 8433.9659 6645.4271 13383.3731 8476.195 36008.7066 26196.5727 12609.7731 8803.1896 11103.472 14225.6736 7959.6537 10559.7572 383621716 amyA Carbon Cycling Carbon degradation Starch Halobiforma lacisalsi AJ5 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 60179.5914 5947.6726 4154.5335 1994.7296 1994.7296 4644.1704 14293.4138 13252.9112 6697.2704 4846.0592 15251.2423 374922655 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11189.7495 4602.8991 7951.703 8218.8628 33687.7858 2964.08 6366.4014 4353.9321 6347.0924 92505.3017 9018.455 8923.274 50047.5929 21269.2196 21269.2196 4227.7591 19863.3392 6866.9052 6584.5267 5754.7632 11356.8529 7771.4269 7786.7818 26319.6718 12614.7204 9429.7942 9123.0977 6901.6649 28777.7244 7879.7462 8959.6999 10441.5843 77820052 nirs Nitrogen Denitrification NA uncultured organism 20394.4066 8411.0343 7156.2136 11939.4083 16750.0282 142139.5345 4812.3715 7201.0895 12298.3254 14390.2871 409947.4427 11954.4828 10552.035 16711.814 11666.8098 11666.8098 14529.784 15005.7023 18836.4632 15295.9861 38677.136 14770.6541 20540.217 6377.1325 16848.193 11679.0076 23135.1086 12438.2937 18496.785 17913.9398 14856.9032 9387.7331 21457.3136 17652.4761 29609642 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 5117.052 2065.8083 3360.5298 25560.0166 83316552 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4574.1946 6756.5028 17488.2147 2456.8873 2257.9625 9215.5406 7560.1469 2319.1456 84587.8934 5314.3888 5037.1299 3982.2859 3982.2859 11333.2973 4957.5499 5319.581 2841.5597 8195.621 2527.6015 9112.564 7642.4106 3073.4643 4168.2762 5048.7269 275721.0651 366087038 amyA Carbon Cycling Carbon degradation Starch Lactobacillus zeae KCTC 3804 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 5980.1905 12304.6378 2082.904 3331.4118 8161.3075 4550.6037 9476.3509 6842.5455 5376.5198 1901.2222 9141.1269 4366.8103 404419664 badh Organic Remediation Aromatics Other aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 189221.5001 147097.9866 18254.7522 180754.5434 25375.2532 319413.1987 139225.0686 45186.8117 49730.9179 42651.3903 45020.6686 1099170.5522 200957.3895 59388.0657 81522.967 67203.3183 67203.3183 38600.3672 62356.71 60247.5746 1496098.937 71539.1416 195358.7134 191355.0597 73044.4561 153938.3254 195558.2506 331961.6449 94179.8478 60388.5317 159127.4929 98647.7339 103977.9808 34519.7161 1877327.727 70732485 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 15009.3232 6979.2504 8582.827 2290.2565 4142.1742 6373.9061 5952.4674 6610.3586 117724.2607 4359.1149 6154.1915 3932.4355 2761.7592 2761.7592 4375.1277 11564.0991 5097.4622 4667.5981 6009.4967 8880.2146 3406.5564 3786.1633 10623.5976 3727.7119 11483.2935 9442.1687 2651.1747 5730.1772 5536.4811 5194.3679 6814.1766 367042988 rgl Carbon Cycling Carbon degradation Pectin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 5932.2373 8963.6959 72937.9787 2364.1285 5744.9027 30938.2259 9860.2155 13988.7519 9940.4194 84174.5574 4676.5438 6418.2309 5081.9973 60137.0137 60137.0137 3321.694 11841.035 6128.2541 23737.3929 6758.8532 9786.5067 12383.9811 10050.5 10154.8033 4980.0109 15670.9779 6864.4982 8214.693 14046.1322 8917.2478 12940.793 4723.3644 7531.8727 39934082 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 16066.6035 23144.2122 7213.6099 66281.2083 8296.7734 4691.506 66501.0461 5496.5059 12896.7094 32968.0896 13241.527 105378.386 16776.5569 18221.0967 13744.2351 14074.1082 14074.1082 7832.8533 25967.0259 18025.5851 5999.1292 29450.4557 7752.6691 62560.1305 12586.623 20521.0081 146980.2681 36281.1625 17838.4864 81547.5014 15569.6727 15015.0553 21735.4746 13333.0652 10667.2499 353544351 tktA Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 52875.8933 1756555.1859 4826.9834 56241.3776 7079.6441 2279.9232 42475.5753 4404.4084 5563.4614 4054.0014 135801.2517 5171.1146 4450.3297 4035.3149 2897.0092 2897.0092 21140.8004 90289.078 6008.1517 4251.6848 4702.0162 7106.7517 10777.5107 5952.3537 65501.9095 8574.5973 11340.9852 7818.0304 5065.5559 7047.2197 3295.93 126460278 alkk Organic Remediation Others NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 7169.1159 11615.7563 5763.424 6849.2895 3549.9924 12003.0672 7614.1119 14649.923 160936.1841 11411.8551 10745.4888 8597.4498 4959.2996 4959.2996 6093.6098 13786.0728 8794.1558 27683.2569 10473.5811 11206.8039 4444.2918 4701.1214 9971.6391 4445.1322 16783.4876 8227.6684 11861.628 5256.7613 5625.7568 9561.8331 6000.2718 11909.9551 220936052 pgk Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 39007.5582 913780.607 32978.9678 169352.5712 4496.3219 17452.1869 33291.2399 132316.2947 45796.0247 10388.1593 353006.7406 12761.4724 221921.6364 33305.2834 23990.1596 23990.1596 12732.7665 41505.01 20177.543 16540.3071 137203.3139 21323.1359 39527.7006 14800.5938 37885.9132 15557.5998 48180.8903 29498.7285 35871.1559 12841.8425 13222.4297 13353.4909 52482.1329 31170.8749 332040510 b_lactamase Virulence Antibiotic resistance Degradation Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 6453.257 11437.7602 41885.6933 9341.1724 27436.5715 10606.1099 12908.328 16404.2744 34664.8967 14652.5834 41994.0744 15200.9934 187537.0546 24923.1437 13888.4428 18227.4161 9854.9405 9854.9405 13314.7434 14511.5414 11952.5641 9823.1437 6484.1343 8174.6123 12370.6842 6185.704 16595.8246 8765.4063 21545.4731 16150.4356 16430.7315 7161.7933 18123.2177 9157.3548 3900.4941 5887.4159 320125456 ppx Phosphorus Polyphosphate degradation NA Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 12827.906 98363.4301 13604.0645 4608.0302 10622.8109 5806.3653 16565.6835 7537.3968 661371.1923 52160.8293 11849.1687 5222.4946 188632.3369 188632.3369 7280.7371 16338.8391 6627.9997 4933.5074 21435.8629 14650.9324 9449.1474 7205.78 11751.6361 11084.7009 20955.7032 11816.5173 33152.4204 37769.7034 13936.0943 12204.786 19852.191 12856.5081 383333885 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 4846.7769 6734.1463 2331.3169 83497.9756 3708.4786 5609.2471 3936.5247 3936.5247 2957.217 92742.3158 9592.6101 104685.7227 3729.4149 9903.7472 6157.9792 12045.4559 4147.525 3397.3506 6040.4103 2150.3255 21328.5716 290474678 chitinase Carbon Cycling Carbon degradation Chitin Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 10371.7024 5560.8728 4502.535 8280.1928 2518.7035 2518.7035 7005.2162 15506.6391 6682.5505 3143.9561 10780.7751 9759.1013 9376.0702 5405.3787 336320163 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 157516.1107 11554.1897 88825.8507 53175.3228 99154.5322 47440.4954 223116.6253 44491.3613 164770.4931 42256.0338 78831.2582 58947.9738 757078.4832 143788.8491 68314.6204 125610.2855 96376.7262 96376.7262 40339.6732 97699.8526 228925.677 215234.3571 58405.2982 46154.0406 55747.6191 36628.8991 71304.1377 44967.2805 303370.7701 101342.4473 78364.2534 25006.2791 54706.2813 55634.4824 30637.701 112916.1549 14389261 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 89359.8419 23613.7531 114997.2291 676286.4573 194740.7101 95707.1277 63239.5832 54597.2948 54057.3685 79823.7072 85196.3052 85984.9173 1417071.1745 94594.2705 190493.9572 178600.8044 84872.109 84872.109 59681.8972 144710.8566 58131.214 58928.1375 97109.2952 178384.8698 57534.2679 62091.5831 144109.6983 110002.1305 192461.4243 92176.4287 101664.2113 27207.6371 63163.3409 60739.2306 35725.2092 139991.7396 408781630 alkk Organic Remediation Others NA Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 301880.4906 1105920.4322 303709.0256 137753.961 30285.5282 10854.7263 12669.5117 52639.1705 50302.182 122359.6099 72024.7823 50689.9122 750219.8254 80588.4991 54449.994 52408.6515 68252.5835 68252.5835 35426.3475 96124.8068 97225.8069 783483.7386 160386.9604 69394.897 56491.0235 55881.8426 40836.1891 92786.7257 113807.4717 87957.3709 70387.2929 56291.1487 59057.7558 83476.3324 77236.408 93861.4529 91807168 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 17815.719 28083.8951 28125.7926 5352.6375 7096.7171 8150.6495 10591.8554 3659.0938 9827.1784 21091.5645 16560.3844 249223.3359 19326.0811 11362.2934 9408.4095 32204.9406 32204.9406 9088.395 21951.475 122243.2018 9949.0329 146597.9184 14232.4002 11750.902 9493.2198 20430.3827 8534.4524 64911.0289 19366.9432 20466.2486 11039.3252 13988.7544 10896.1566 27292.7916 13055.8826 225387000 atza Organic Remediation Herbicides related compound NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 41641.2764 18918.7929 35421.315 24586.8213 14696.5938 13419.0042 21003.5568 3277.5305 17803.6509 224481.5732 32342.8482 316121.3428 16207.0413 36407.5608 28941.7785 28816.3177 28816.3177 10269.373 108637.3979 14558.7778 14216.5778 71021.1816 21565.3345 9649.0825 14148.918 25148.1306 15852.1986 68736.2217 90835.9271 27145.2429 35019.1893 16667.3457 15782.5056 10517.9952 46406.0715 10716968 dsrB Sulfur sulfite reduction NA Desulfovibrio africanus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 15834.7452 11385.2894 1796655.6874 9102.4764 16455.9162 11304.3202 12141.849 14395.4315 10184.7721 225378.4299 9067.5785 14444.2328 15871.8951 13550.6758 13550.6758 15139.8948 24140.3113 19541.361 10073.9429 10558.5872 9544.5569 7551.8895 7670.0864 23800.4373 13305.9584 32508.7671 19709.3813 21105.8177 11682.5167 12369.0375 14189.7945 9213.3364 20918.4575 190688131 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 17592.7154 7690.499 2896.5007 2551.8762 7134.8174 2809.5526 85068167 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 4754.9393 21995.8304 4787.9383 7378.2221 3997.884 11017.6255 11017.6255 7452.1464 6064.4553 9262.9737 6414.7282 3251.2019 2904.1851 2196.0432 4472.5607 5526.0532 2063.0211 3708.513 3725.7966 4953.7136 338821284 pgk Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6014.4643 108356.2212 5749.0877 4421.4176 3629.1925 6624.6432 4738.6947 4626.1411 5128.5982 2792.5484 2792.5484 8580.666 4697.0673 5798.6858 6928.1949 7033.5996 5298.8764 14392.1001 11402.4378 3027.7824 3311.1649 3087.1081 5421.9605 212533605 lactase_fungi Carbon Cycling Carbon degradation Lactose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 16395.2578 5181.0452 2177.1439 338903597 nrfa Nitrogen Dissimilatory N reduction NA Eggerthella sp. YY7918 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella; 8059.4964 12090.8787 3401.711 4390.7251 3739.8859 4286.4351 171726.4882 5129.6253 6291.8472 6291.8472 2650.8654 12400.5189 6911.2845 4263.6044 7123.9437 4530.5828 3625.5379 4157.6009 2479.6766 12644.585 7188.3119 3004.407 4055.3043 4538.7007 3672.4395 12690.6217 40253025 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4369.2194 3390.4887 3661.9994 2514.9732 2514.9732 5355.2213 4093.2393 2949.2767 125973625 arsc Metal Homeostasis Arsenic Detoxification Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 3662.5376 2071.6392 3406.5766 64604.8974 3408.5075 3462.2936 2669.5245 5398.9515 2036.6724 2021.5471 2898.7703 4290.2021 319766430 cysJ Sulfur Reduction NA Geobacillus sp. Y412MC52 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 57624.4221 26124.4373 21693.5056 23483.9104 109455.1487 22535.263 18090.452 32533.6542 29321.9825 39743.9738 70507.5995 37392.8828 798642.5195 32001.5954 29716.7914 100998.8927 56480.9044 56480.9044 19462.8395 62135.9922 41470.0251 40653.8215 42780.9865 57419.1832 17874.4897 41581.0524 41753.4088 80207.512 71163.5992 36945.9959 45687.5734 18085.2367 32119.2995 35747.7386 27754.0357 24782.7923 149913715 phn Organic Remediation Herbicides related compound NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3669.8883 18298.5254 5840.8766 8035.8025 4923.8129 3126.7764 2200.0502 4175.3543 7078.3417 90041.0649 4777.0098 5891.6257 4440.0274 3402.8248 3402.8248 3026.6288 8419.1499 7840.4045 7266.1671 6478.6605 2248.25 3872.667 8876.2847 1944.5809 11097.7749 5013.3832 8527.0619 3903.1327 3896.0208 5069.7548 3488.7825 5898.1019 227960908 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 11904.4145 10946.5166 6458.0327 16530.7139 2615.9608 3940.4005 5835.279 7907.1396 10587.6701 133383.7923 10095.7092 10806.5003 17322.1382 7116.2925 7116.2925 530500.7374 13154.7804 12164.5952 11544.0289 20237.4775 8484.256 6461.8515 4837.7286 21471.0207 5557.4781 17995.6297 15731.9604 18003.6744 4276.6461 7131.2976 28016.8768 108502.4133 8370.2622 145233743 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 15971.4783 21562.8458 6129.2375 3604.6689 4479.9697 5480.974 8064.7026 6227.2668 85201.4563 8644.1757 14265.6288 3002.3766 3002.3766 5100.2513 37219.1766 13090.5318 7402.754 30713.881 8230.8196 4094.801 5181.298 9853.7523 2769.2884 38841.2687 13349.1516 23252.3856 6048.345 4419.9484 15064.6246 3837.2548 14408.839 60492739 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7528.7759 11498.0305 5982.2455 8402.0539 5499.0098 3496.7728 8392.5265 5784.7236 2624.2939 120258.6187 7563.3984 5654.4604 4014.3623 2226.5065 2226.5065 3779.6984 9402.9985 6983.1776 10170.2313 7847.6151 5931.8253 3016.0375 3096.6427 9731.85 2889.2967 13663.0746 8961.8085 3935.7049 4478.2498 5362.2701 4176.8556 10028.8157 239816485 TIM Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 955290.9292 56366.7726 336189.631 20414.6695 13390.236 10972.0033 22870.6493 9405.5012 37911.1688 28029.5822 36794.8001 466888.2053 25062.8021 23672.8724 45452.5752 35390.0593 35390.0593 18737.2012 35936.4173 19309.5395 26974.9302 37187.4539 49763.8372 11391.1363 21661.4187 32077.776 22413.474 77197.6219 45586.4682 57038.8761 13786.9077 25180.1027 20558.5568 37986.6515 63283.779 119407800 nitrate_reductase Nitrogen N Assimilation NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 22102.9143 15565.1327 9779.1439 17343.5204 12801.6966 11446.3935 4996.0621 14690.6536 16566.5326 10775.7001 438418.2586 16911.2026 14795.098 14355.1048 8165.6121 8165.6121 10340.4672 18152.0142 19384.7588 14264.8198 19622.9034 21130.2737 9384.5342 7857.1905 24231.4567 7092.7428 33366.0071 15847.4848 25238.1766 8633.5753 11943.1022 11703.3469 8881.5746 21983.5476 339617168 gdh Nitrogen Ammonification NA Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 13568.6516 65065.1355 5981.7635 10551.7957 9922.6979 6145.4011 6240.7246 7195.7177 9438.9059 12303.6118 6770.1394 240684.6625 12967.1503 11694.9536 5591.5048 6952.4397 6952.4397 6282.891 14921.9018 11827.6559 8042.9805 18531.421 19262.5385 7128.5055 7578.5051 17296.7892 23730.4905 31405.9343 9614.4593 16256.2106 5263.6043 10906.1814 10730.6431 5564.4197 18632.4251 119404184 nitrilase Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 29013.5422 7450.9717 10681.5667 2234.5977 5247.2445 2958.5137 166367.4447 12295.5135 2618.2529 2618.2529 3595.6626 9696.5786 5494.0455 5584.3516 23565.3739 5280.8412 3340.2851 6157.3323 2335.7813 2671.4786 9670.4171 3646.6235 3084.8565 5119.8573 2928.1966 6918.4236 171742625 mannanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 4713.1123 5739.4214 6759.9445 3573.6628 1991.3609 6498.0974 8465.3773 5910.8918 84130.7785 8970.7555 4926.9949 42349.9434 8174.1066 8174.1066 2607.6943 11530.5343 6508.5242 7370.1131 4166.5049 8176.0185 2889.4942 3778.2309 9624.2957 2600.3035 34669.6544 5054.9781 10844.5302 2280.5223 3522.1534 6634.1025 3621.8933 6495.91 304313256 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6495.2426 5280.3287 4328.5162 2404.7801 2163.8787 2336.0588 4016.4751 5010.8458 2192.8427 7961.4731 5374.4849 2993.954 6502.6423 5546.5099 5110.5565 6043.2967 3580.9034 6244.7199 2494.9824 10942.9287 6183.6642 8947.3834 2140.1643 3884.4821 2126.582 5968.4233 262281738 amyA Carbon Cycling Carbon degradation Starch Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 3678.1466 8641.8519 4788.4686 5606.8267 5087.9809 2558.5526 32603.1419 2496.4218 2732.2666 89512254 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 161863.8277 19712.1943 228490.5831 83807.7192 78367.999 33408.5095 39043.722 43625.5003 31695.1234 50680.329 55343.9958 51901.5647 1081740.4746 54977.6144 60720.8796 71778.0254 43896.9684 43896.9684 41307.6022 64886.1637 48133.869 94664.1053 123580.9395 69143.4368 26513.5262 34086.3499 59340.7324 33302.8812 172246.1057 53335.594 66837.2188 28957.7986 37875.501 34969.7405 26523.1319 65581.237 153809348 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 35353.191 57342.9391 16592.3792 25393.1855 28807.4245 6090.2464 13000.1651 18880.0894 10716.1326 21479.2003 20819.8902 13193.6392 495783.9998 23166.5069 24866.2414 27471.4282 10660.0413 10660.0413 15761.8938 31077.727 19577.745 22934.9337 43891.5368 20987.261 10914.1629 11803.2119 23986.0006 64226.4246 49604.0402 21432.8805 32021.8568 11360.7417 14360.307 18940.6392 46916.9274 34343.4774 268313180 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 11884.4874 3676.025 3020.852 3480.7913 3480.7913 5219.0982 6216.7609 2453.3638 6424.1061 5066.1468 3128.538 406697939 chnb Organic Remediation Other Hydrocarbons NA Trichosporon asahii var. asahii CBS 8904 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon;species:Trichosporon asahii; 10698.5276 8327.6485 23850.0393 7096.8349 6218.1741 9115.6037 5436.0852 11353.1165 13773.9631 6464.3887 174359.4701 9437.8314 15401.998 19387.7836 16089.6359 16089.6359 5954.3229 20550.1042 7980.3317 8423.3764 7790.2467 12792.3322 7071.1636 13881.9302 11825.9145 3908.2123 17525.0216 15352.7374 16675.6872 4928.6338 8713.2201 13414.0062 5606.771 7846.1733 21114404 cysI Sulfur Other NA Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 6407.6413 11901.1184 11364.7975 7181.6342 4512.4382 4539.5631 3827.5864 4749.147 5754.6199 3533.8627 129212.1841 8232.0949 5943.487 3645.3491 3645.3491 4888.7212 17906.5672 7260.8706 5662.8909 5786.7115 13230.0988 4472.2489 5543.2975 9585.7193 5641.3264 14513.8596 5447.9445 8855.7871 4199.7418 5632.6204 5246.2706 4362.649 7166.6519 126232912 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 364450.926 92892.5826 603865.7028 126621.5356 130335.2067 53685.718 83101.8681 163020.1353 160575.9006 109324.9371 251046.3543 108792.1414 2283052.8379 178727.233 154729.2153 139127.5542 115280.9673 115280.9673 66049.0508 178590.2845 124278.0095 175659.9058 179271.6814 151041.9748 72983.8365 73911.0723 145239.9402 74984.3364 197106.4033 117077.9378 130272.3353 52498.6387 99057.0751 88735.7868 75273.5642 234216.7339 297555432 nhh Organic Remediation Aromatics Nitoaromatics Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 5609.9934 5891.3136 7358.666 2686.8508 2456.9929 3620.3372 3285.9621 8709.1983 5646.412 25955.9868 5532.4613 2685.4433 7467.8528 8922.2048 10161.6681 8515.4629 2834.0919 3749.2271 6743.4224 41407685 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 74488.0916 41750.0774 23740.8942 33055.445 6910.8918 31320.6746 43249.069 22695.718 35923.097 91517.5183 29702.0768 804110.4758 45515.8577 32798.6349 49407.43 34888.1564 34888.1564 28815.6895 59075.9068 36908.9645 29785.1374 42159.459 53114.6731 44548.7718 22545.3688 40757.7482 25879.5016 83227.0584 40868.5628 92679.4877 18540.2369 58345.7691 30482.1636 140550.7604 40273.4618 88809813 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5877.2566 16649.3356 8322.4478 6922.2199 97227.8305 3317.6266 4126.3846 4126.3846 6442.9833 7072.8011 9911.2292 4530.1477 6210.8754 2180.8139 10270.6753 6257.7343 2324.2038 3423.5328 5176.4279 19637.8097 7105985 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 154682.0649 218956.4864 36448.1906 21047.5739 21586.2995 40922.093 79237.3606 146997.3705 43435.2277 145348.9179 112376.8084 4352446.3317 170847.5595 75146.5917 213809.6092 118012.9075 118012.9075 71519.7549 112163.7944 69074.8652 86850.8535 190594.2264 76977.3427 83854.7764 69287.2825 121403.804 119449.1109 220990.7586 103841.1101 168615.1442 75999.3524 142685.8444 113923.9314 64642.896 170723.6792 311216206 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4511.1034 4676.0227 3929.2065 62570.306 6851.5282 5219.7868 2060.2027 7195.7214 1917.4495 3866.7531 2026.1145 5827.2874 377573237 amyA Carbon Cycling Carbon degradation Starch Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 61285.8362 2867.1721 2530.8127 7068.7648 126145.0458 110296.8937 13269.5995 6631.3423 178399.6382 2860.268 2860.268 80021.8329 39898.2092 10336.3037 42950.6112 5898.2441 157591.3363 3494.8033 6736.9881 4828.8893 8373.3446 64365.8078 7568.6106 12622.8913 55674.8746 45027.785 9166.8883 26278878 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 60520.6065 36451.5098 26857.2524 17440.105 6675.8173 101326.553 47216.1492 75270.2348 97573.1151 64519.3263 66345.1897 1404730.0023 111000.5465 123082.2128 244756.4667 70770.4542 70770.4542 34751.0278 89850.1393 87358.4719 168402.3295 87437.2507 62402.5353 63240.417 64804.1695 62052.4781 46120.3922 336724.4464 131361.6794 73711.216 31232.0009 65848.141 72949.7808 29242.5874 93752.7631 115588271 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa UCBPP-PA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 82359.8194 35849.8479 39604.2818 66240.7156 22427.1715 36313.0382 22114.5664 22839.9282 25366.7291 128561.1722 36707.5998 969362.5701 78840.1842 48657.2184 75693.7338 39593.2978 39593.2978 48187.3926 39383.4692 30020.6717 62881.5441 97016.1503 192299.0493 29856.8492 39552.2451 48144.1174 56225.6561 108006.0115 45472.0656 57216.2334 20890.7892 27101.6685 44735.1603 12925.0044 19580.0367 58040644 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 6064.6878 5423.7562 182811.4499 18251.9952 9731.9775 8220.7121 5294.547 2897.6404 123524.7009 10595.442 12323.976 7638.43 10697.2153 10697.2153 4335.0047 12162.6326 5753.6615 6810.4775 5810.6775 10869.3273 2127.4434 6163.6819 22193.3212 12372.5224 16270.1283 9898.1 10007.7479 4786.3867 6477.4699 5909.5137 3656.5575 5122.0519 58264792 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 273842.7022 31985.1337 152524.2049 142033.9622 128947.5631 185575.322 399072.2878 442523.4732 375169.6089 174192.2025 211778.6202 186155.2367 7664336.6829 383017.9022 244919.6358 262104.4155 233672.0892 233672.0892 149798.642 288208.1714 146513.1615 237639.6521 267744.7768 172305.03 114127.2625 168897.3954 182228.0324 126769.9935 429318.6313 136838.2556 234281.3337 101687.4442 128970.6347 243193.1965 104311.449 222347.4733 289626671 cysJ Sulfur Reduction NA Pseudomonas syringae pv. aesculi str. NCPPB3681 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 43631.0427 15392.0588 17612.9114 42176.6086 38864.9473 17966.9446 17865.7616 28592.179 15356.7279 21920.5383 84053.1015 35456.292 356406.4301 24877.0599 21745.67 28295.9952 12911.6741 12911.6741 15348.7301 27996.4805 29446.6667 69208.3071 40370.8654 28763.7507 30176.8195 15571.9534 47253.6199 12148.2551 40864.6989 26998.7872 28198.5709 14248.8674 15571.249 19073.3951 14692.968 26630.21 149141146 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 8484.571 388275550 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 35965.1003 29329.3635 35271.5428 50803.523 27251.4181 120999.6739 13747.2317 8286.0576 24132.1018 33808.7859 32366.846 235177.645 16082.7708 31231.4718 23619.7499 22138.2203 22138.2203 12343.5907 22559.8511 10928.9116 68538.0392 17975.8707 265098.0929 12458.4874 25850.1898 21553.9577 20082.0453 79060.1276 19057.9643 36648.4867 7786.2534 44627.6004 23035.4083 11275.7189 17580.8436 9798642 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium Hawaii Lohi chimney-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8423.9831 6231.6563 7258.967 8861.0283 6072.5401 4760.6272 4438.5954 6925.4639 8317.3106 3362.7238 210188.3352 8817.7717 10247.3869 4260.4562 3537.3152 3537.3152 5660.212 10244.4028 5451.9306 8186.2712 8662.2778 10574.632 10964.4597 4532.4631 13364.9369 3712.9268 11876.5863 9092.2803 9701.6918 5046.4673 4784.5065 5961.1119 4731.4486 12306.594 198281891 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6337.2922 1996.3547 4803.5909 5957.7828 4999.3069 4500.8928 4651.3497 4355.6602 4355.6602 9094.8425 4717.0971 2982.3111 8466.7858 6011.8975 6150.2483 3165.8622 2967.6511 4458.14 2397.8247 6019.7696 209408527 cellobiase Carbon Cycling Carbon degradation Cellulose uncultured organism 69331.46 4588.2394 4650.5329 3760.4554 6801.2178 3571.1143 67978.6842 5275.9142 7156.2514 7866.6491 14021.6178 6507.5568 5630.0459 8850.3366 2496.4861 9769.1472 7580.768 7189.2544 4421.5106 3980.6471 4400.0248 3624.0474 9115.2221 33415333 nasa Nitrogen Assimilatory N reduction NA Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 9936.044 414978.9633 5986.5265 8036.2296 69646.3307 7546.2714 4520.7365 69076.1402 5729.4855 16874.2947 9403.9118 5860.8647 5860.8647 6487.0227 9064.9889 7518.6542 4665.0418 6574.4866 4319.5451 3369.1949 8210.5443 10026.6928 7166.2948 15311.4988 12499.6916 13853.9099 3458.815 8220.9962 7783.8633 3159.2935 6669.4553 355336208 badh Organic Remediation Aromatics Other aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 6647.8852 12757.2579 6875.534 44360.4336 7204.5957 3747.4224 3534.3088 6099.8968 9514.4847 4806.8807 104203.3175 7851.9334 4413.9337 8055.299 8055.299 9389.7308 10631.1763 7055.7341 8955.7394 7577.6152 16480.1669 8026.706 4306.4034 10738.6846 5903.6052 17908.7803 12724.7498 14165.6555 8943.1117 15787.13 4300.4553 5358.9532 13965.3473 282896436 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 46668.0206 80222.541 25861.7127 10672.7106 11014.0919 8059.9503 29287.1971 27744.2866 15631.1789 12756.6041 48662.7295 27587.9078 226835.919 26763.3257 21396.1522 31492.8146 23735.9776 23735.9776 36285.2716 46985.0743 13112.9414 27551.6557 116591.7561 17425.6975 16439.8617 14850.9032 23101.4944 34913.9144 41540.4398 14102.3536 36506.5538 21085.6512 15220.852 44588.8205 72619.4985 36353.8267 333807271 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 4827.6558 12929.7868 5351.475 4505.5165 3374.3682 14061.4228 2449.8655 5164.211 4418.7774 93820.3231 4464.1016 4442.3155 5100.377 3512.0864 3512.0864 2798.7815 13310.4164 9090.7325 6337.0503 4302.0517 3098.4208 1983.7476 11322.055 7598.6958 3413.9936 5814.575 5917.324 2198.9319 9014.0184 153010026 dehh109 Organic Remediation Chlorinated solvents NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 5479.216 10356.3364 4978.1778 6516.8328 5326.7731 3435.0501 3102.6752 3102.6752 6126.3595 2500.2056 2363.7495 7933.9786 3591.1197 1913.8202 2710.7289 3192.0333 2486.248 23990.64 169779067 amyA Carbon Cycling Carbon degradation Starch Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 5204.6187 3523.9023 2699.6444 4153.4234 5127.9919 99593.603 5005.9396 3564.3058 2058.8511 2058.8511 3387.4218 8715.6717 7301.7396 4938.5978 7807.2808 5934.6428 7248.7009 3085.5188 10061.7393 7037.5603 10083.2637 4254.3911 3621.8331 4388.6692 3197.2358 6820.7004 29832818 terc Metal Homeostasis Tellurium Detoxification Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 23390.3352 11882.2685 11379.1093 8323.5482 7364.8892 16616.481 8356.9142 10801.6581 22043.7918 24430.9122 169496.2179 10168.608 64639.9023 15735.0472 6381.4009 6381.4009 10460.0144 71605.714 38103.886 25695.9789 29601.0741 12734.5475 7132.6642 10425.3347 16235.833 10279.5748 37057.1929 18740.5063 67134.6625 22994.7649 8655.2033 25287.4285 13477.2114 29235.2084 343496960 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 26207.7542 12639.9388 18241.3265 30307.0537 5130.4054 17463.9482 41602.4797 39999.6157 22379.1224 53541.655 14312.6401 1877482.6805 21439.0009 16926.6853 38475.0012 14092.6327 14092.6327 50836.3594 33610.6527 22721.7477 36153.7056 24495.5235 17283.1128 10182.7711 12831.6744 20482.2391 12985.0071 40968.4061 24959.941 28615.1203 15480.3149 24525.915 19822.9059 9297.1745 21799.7207 300022845 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11310.1022 9424.8698 6234.6952 2765.5538 12860.5197 246691.924 4265.0385 6945.0682 2323.4451 2323.4451 3113.3725 6855.8349 5585.51 3016.7354 9447.838 8126.3836 7463.2038 6356.4727 2922.0496 4910.2464 4283.9603 26801.0189 327197108 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 4508.1264 4152.3462 3448.2647 5909.7315 4235.8368 3609.3162 4556.0252 2509.597 2509.597 6289.6648 4113.1673 3678.0431 7908.5901 2402.3623 2679.9924 8787.5082 5051.8142 5458.4922 3554.2117 2929.8028 3268.0737 2284.7525 383789545 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 447958.1491 11572.5808 120638.6585 43800.8355 255863.0327 37328.4617 134748.4163 145400.0153 78425.8745 93185.4295 157022.9649 149638.0922 2974164.1141 116629.1116 161975.7462 154409.2561 190279.9617 190279.9617 139673.627 142928.5469 87773.8165 204242.3235 474406.5137 115531.5803 92154.0349 90020.08 126686.8067 189033.4146 188843.4505 80601.5917 192471.8843 81782.7567 125172.8907 119929.5426 74014.2522 93115.4961 18413621 narg Nitrogen Denitrification NA Halomonas halodenitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 12131.0191 6596.9035 14847.0931 8452.5758 5966.4912 5795.9543 5140.5741 10592.0098 24063.9977 6396.5192 285942.096 13850.3168 9875.6675 11071.3725 6048.2053 6048.2053 10195.6773 20352.469 12693.0927 13870.1495 16206.1913 23233.6719 7263.4497 6806.3086 19832.9942 7833.4872 24665.4534 9828.4458 20797.0473 8611.4139 9858.0274 10128.7756 6820.497 21046.9638 385208463 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8200.4535 5020.8086 5185.5242 5380.7697 2051.6574 4986.2614 7881.0688 3758.9168 2352066.0956 5087.6057 9809.2089 3856.886 3856.886 4665.532 18121.5617 4881.4907 4399.7516 7930.6694 15875.627 2826.5462 5723.1968 50269.8105 14569.2622 74708.5318 11433.2814 11006.4054 5168.67 6079.7206 33644.2666 3864.8292 5578710 phdci Organic Remediation Aromatics Polycyclic aromatics Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 17987.1132 5881.8946 8411.7895 11932.4448 13255.7046 9719.2167 4084.3127 21838.0445 14058.0342 8743.4187 149377.6718 21234.4753 14638.2973 7177.6181 8720.1092 8720.1092 8853.8897 17203.0363 13665.2424 14429.1332 14454.3337 18627.2618 5691.0356 22203.8988 18618.0587 6435.4747 92313.6002 13542.4084 24443.7291 8757.1304 9792.1371 7984.3187 7398.4187 17649.8606 40218018 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 5267.4403 2075.3559 126737065 mer Metal Homeostasis Mercury Detoxification Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8106.8228 194592.672 4106.1844 2839.5168 3345.2844 5518.3443 6067.634 4222.9627 168436.8333 6253.9502 7951.0943 7285.8986 1983.0563 1983.0563 6017.4842 15717.5686 7727.8701 12096.7233 6083.1899 17191.8123 3350.9457 3055.2564 9365.8106 3692.5304 42874.1728 9383.3553 21276.286 2916.6376 4030.1117 5671.5252 3103.5006 16156.323 119483172 p450aro Organic Remediation Aromatics polycyclic aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4386.517 3024.0911 2960.708 2960.708 2713.7305 210611726 pula Carbon Cycling Carbon degradation Starch Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 11173.6708 8712.9554 4400.8368 6089.9085 4744.1302 8990.3503 7631.8241 3504.3616 193436.934 6894.0515 10698.4478 4296.7197 4296.7197 7179.5645 12959.3156 7761.6483 9982.9793 10628.9565 9937.7642 4174.0717 4915.1275 12569.32 3817.1434 18020.7129 8195.9401 13017.4227 3925.3078 6661.2537 7209.7311 3903.8724 12449.0141 392330580 amyA Carbon Cycling Carbon degradation Starch Streptococcus canis FSL Z3-227 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 80443.7202 3990.492 3646.088 3801.4257 2716.4387 8199.1228 3872.7266 5200.7309 5299.0001 3101.316 403646205 mdld Organic Remediation Aromatics Other aromatics Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 5760.0642 4690.7479 5559.305 2944.2693 65634.0371 5925.1818 2845.2041 2845.2041 3451.2823 9440.5134 6548.4732 6424.1433 4733.65 8089.7104 5766.0577 9901.7095 10015.1454 3449.2814 5059.6001 5621.1718 19734.1588 357031000 ppx Phosphorus Polyphosphate degradation NA Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 45601.5563 23007.4143 253836.2995 40454.3044 28682.1599 5219.5312 15250.8424 14372.1989 10571.0827 75136.9692 23653.3448 22722.8196 737301.253 21326.7357 20542.5695 30366.957 10218.7288 10218.7288 15139.2033 83538.8064 36253.2666 44927.0661 55618.4605 103216.097 51426.1497 18373.3822 26944.2652 20542.8997 74997.6581 21499.007 48995.2591 12895.9667 19331.444 173304.2311 13035.1691 169104.9067 349780334 TIM Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 347106.6232 55687.5058 7728.5862 20427.2754 48981.9218 33093.729 15760.8944 36377.5159 103515.7564 19120.7454 51639.7941 58136.8104 304510.7192 22119.6339 71656.9657 24879.8995 49583.6103 49583.6103 19611.2947 78672.3417 45316.9096 20128.7285 401125.6092 37184.1762 16886.5296 37395.8582 61378.3238 22464.3376 100713.2363 46773.5894 55663.3499 194809.4822 53204.4701 55558.2488 33733.0939 31881.1326 293392478 arylest Organic Remediation Aromatics Other aromatics Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 11879.3958 7324.5178 8600.8522 16186.739 8355.2118 8317.5824 22399.8182 8662.7019 10439.2372 31753.0136 18955.3063 274103.7436 54271.1017 19605.2525 22148.4272 22348.8229 22348.8229 16071.7429 32547.2472 18491.5766 11692.8857 46022.5243 34369.6664 9628.442 13481.6694 24349.7425 11669.9202 94115.4391 24528.5371 19856.7966 9566.8157 15505.3037 21561.6386 11869.941 17001.4318 390947174 amyA Carbon Cycling Carbon degradation Starch Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 28306.6649 5489.3724 15392.1061 71656.4963 10327.4017 10868.2999 289323.8247 8055.9311 178978.1203 10468.597 28441.0666 399038.3659 12720.3559 22831.838 227446.2259 14004.8425 14004.8425 3439.0588 17701.8593 9482.7392 48145.0526 24015.825 16697.9081 10965.4698 12163.3413 16736.8406 7082.2199 34060.0944 23307.6424 36563.0314 5715.535 10469.2821 8466.7463 3967.0989 7538.0769 398215324 nfsa_2 Organic Remediation Aromatics Nitoaromatics Pantoea sp. YR343 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 68021.0778 15048.2557 362208.4578 10241.4915 39843.2745 7459.7101 22684.3165 44492.9112 69703.3098 65974.1994 50086.0556 66902.1112 797410.6387 34011.4771 46499.3904 104336.7194 41373.6285 41373.6285 31375.284 68225.8704 62273.7164 47113.8473 78029.8804 86139.6077 43305.115 47351.7016 41127.1017 45992.9048 134520.7799 68138.586 73330.955 23409.0773 59680.5289 41165.7569 45043.2953 112233.4116 94449436 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 18677.4472 9015.832 7832.1097 13653.6066 8756.0137 8282.9817 4763.2625 8154.1658 21388.9374 7658.573 158557.2096 15717.5719 8590.2975 6317.0931 5200.7603 5200.7603 9203.156 20350.4731 12201.8556 11908.9673 14371.4412 55572.1429 8262.1358 5928.9355 17104.7242 7367.9492 35756.6621 12482.849 13551.6591 8709.5072 10101.179 8614.6418 11402.6326 20515.638 116251752 nasa Nitrogen Assimilatory N reduction NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 22030.5952 11325.0539 3187.2824 6203.3537 27696.5467 4476.0804 52356.9297 8902.911 5340.4405 11417.9859 4325.6571 4325.6571 4389.0101 9048.7054 3644.8501 8535.4457 5049.8831 5243.9001 3621.9708 6099.252 12583.2651 6822.5403 12578.0117 5893.9336 11075.8993 2427.1825 9004.5775 7930.3193 3921.3776 30358.2922 397727669 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6165.5557 13806.5839 6856.5245 2611.6133 3201.6675 3412.3746 2871.68 83962.4487 5467.21 12089.4419 19626.8949 2505.9084 8790.0274 7543.8842 5313.0549 4124.0609 8551.4263 4942.385 1969.3042 3124.6563 3702.3644 4799.852 4439.7739 88643170 dsra Sulfur sulfite reduction NA uncultured prokaryote 14443.0716 6097.7717 11044.7332 3424.1134 6058.2828 32996.5319 6603.9579 7262.0826 4767.6173 4593.5486 57218.7569 3776.2685 12280.8779 43249.2232 290467931 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 11818.7262 64758.9985 40031.7196 11092.1313 12127.5541 4394.338 5074.1953 10604.1653 13410.3546 6460.1131 150447.295 12551.2108 11083.8198 7670.4066 4900.6041 4900.6041 30789.9924 33786.2431 10913.3996 11117.45 14323.1797 14959.6231 8108.9012 6798.3624 18669.6251 7189.0972 32873.0181 13926.4904 17414.6063 10911.3557 9902.2636 12663.3487 9720.0009 13078.1565 182413162 rgl Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 81939.0754 2203391.9367 60474.1318 158938.0482 101215.5833 72889.0149 22833.0776 69571.0465 28538.174 24618.7454 33417.7784 56832.4892 384765.792 81298.9544 33137.1329 38828.1795 58257.6596 58257.6596 78052.865 158422.5969 49898.8587 25063.1186 139944.2699 24213.5519 161899.8663 45463.4923 46887.9665 71225.3405 175242.0524 50636.3116 44120.3089 33074.9686 46467.2888 65196.8948 22341.6854 23576.3449 374329713 SoxB Sulfur Sulfur Oxidation NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 4024.6082 563259.0204 68520.0791 4302.0243 4621.9537 7765.2345 2241.3657 238591869 xylanase Carbon Cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 22382.0051 43769.1997 8309.161 23272.9709 382832.8116 132953.2323 72564.155 5817.8399 18034.0353 19030.6368 9358.1026 245885.9293 11287.405 12866.0498 9307.7024 7195.0346 7195.0346 9833.0628 27972.6655 12569.614 22806.9448 82294.4958 51959.3024 16340.1281 7766.2453 21038.6576 17700.8821 39275.1915 15139.9787 29458.0061 14994.1615 20595.4958 9879.6097 9726.0893 20277.6124 192362528 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 23363.2526 31102.4157 8353.1852 9115.3111 20909.5786 4649.3845 14715.4095 24538.505 17094.804 12963.5885 17073.2537 9527.3977 317677.374 22767.8226 17648.4782 17359.7307 79625.2013 79625.2013 9763.8014 31730.3926 14712.3795 19336.7429 21350.9413 18624.5592 21806.9662 5876.1767 20726.7368 110154.547 935303.8572 26731.398 22194.0583 43802.6966 377453.6282 13088.5017 24333.3314 33642.2148 395143789 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 50649.7437 13236.7669 54718.0966 6598.8879 3277.5365 18866.9404 5761.5733 5761.5733 108705.3842 9459.2599 37694.8973 4912.1884 3932.1387 8035.6631 10956.3024 16189.0806 319750450 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 232466.7085 26405.0872 146318.9215 121127.6872 245704.8333 640674.2425 162319.0975 218839.8996 101184.8154 140789.7702 161606.5348 161316.2812 2387527.8932 198592.5954 216620.8968 225845.6217 169473.4139 169473.4139 87679.7298 225018.1991 120868.0885 147538.4052 412386.308 165266.0761 111420.7156 92816.3437 141164.0718 160657.1121 252057.6188 136668.8699 167190.6577 131054.1593 127793.3868 99608.3597 109435.1079 304179.8353 82411653 terc Metal Homeostasis Tellurium Detoxification Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 29511.0831 8870.5935 5815.2565 3159.3658 10044.2669 36202.2499 6736.4266 12800.558 23712.9985 971751.7264 24441.1226 58777.4432 218174.5676 19478.3306 19478.3306 47586.8084 21266.0551 20509.5653 7702.2778 14180.6937 23589.9249 50340.3458 25893.438 12103.2727 12336.22 170297.1518 21023.8452 101499.6744 7418.3186 53264.1424 14155.1434 16583.9199 13238.5791 56419238 amyA Carbon Cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 10971.9011 11791.4755 12234.217 48484.4611 38656.4209 13430.0062 7632.4712 24270.2914 11790.4286 5700.7766 229216.3358 16265.8369 14471.9276 7721.5953 9183.5931 9183.5931 12970.7769 15123.88 10146.1692 14755.2922 11994.2689 32283.1847 9259.6491 8932.2354 13711.9717 19197.0539 27598.6658 21336.0345 15113.5706 8219.6217 10025.8651 15515.1522 12199.291 14869.7691 198277555 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 4454.0071 4695.3181 4677.6215 3236.4474 2522.3094 4587.5164 7388.2566 3237.4221 97884.8774 4328.0537 7928.9805 3589.8717 3589.8717 3838.6065 16920.3895 6598.5081 6692.8744 5768.9107 2565.9112 3399.57 6551.5731 2904.7244 32258.5034 7299.508 3659.4339 3274.9015 4309.5759 3578.8877 8259.1689 299794015 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 33436.0428 39961.983 10627.4478 4677.5161 35765.3968 27286.8771 37982.4438 13651.3118 18496.2209 71567.2341 906940.7413 17745.7519 155128.1902 48704.0873 20298.7187 20298.7187 19193.5898 44410.276 13780.9101 14189.8273 57862.7298 13576.4505 24207.1743 13272.1781 32968.2805 15683.0688 38514.0353 22370.5088 27802.472 21508.0619 22462.264 33936.1713 51184.1611 32610.669 163794837 pcag Organic Remediation Aromatics Other aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 15859.976 23373.8629 8239.8665 26906.6826 9724.8903 8894.6209 29323.7735 5631.6521 21701.7894 32289.7452 17739.7934 657161.1153 12226.3359 85542.7007 68785.5266 30667.9789 30667.9789 22074.1295 31880.6764 55611.5752 12364.1488 15272.4063 19475.5624 17917.6596 10007.5656 19495.9444 10761.2266 161271.2487 35794.4653 48749.9871 7321.8972 17578.5598 19545.4195 17349.5895 15480.8834 355540116 pcpe Organic Remediation Herbicides related compound NA Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 22133.7301 10844.1444 8772.384 4592.7056 24265.169 6019.2387 6921.1969 10538.1002 23927.4877 120802.273 8926.5641 102024.5895 5660.9388 25152.1092 12919.331 12251.871 12251.871 9499.4343 16732.2215 7721.5023 12287.3321 10236.7098 7371.6489 8670.892 6613.8613 10650.1668 6685.245 22873.7073 8644.3835 13793.0835 5104.8493 57433.8627 14030.7449 7232.5775 9023.4157 21674530 ppx Phosphorus Polyphosphate degradation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 50518.4322 15185.6471 10619.4637 14379.2773 23314.5316 14705.368 42417.9862 19199.7381 25698.3236 28541.5828 21988.6478 516530.9732 24229.7557 24659.1113 25817.2457 17137.7088 17137.7088 14300.9588 43483.9034 31019.4503 24343.4937 26521.7703 24043.1722 56326.8421 29058.6252 26330.3413 17242.54 51401.9049 20087.0701 46545.6749 12045.234 32315.2097 36540.4524 16284.9681 26031.7139 77627612 hbh Organic Remediation Aromatics BTEX and related aromatics Corynebacterium cyclohexanicum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 17962.3829 3979.793 42289.41105 8085.551 5271.523 11805.90285 11952.05945 29680.9243 8145.89605 8145.89605 7192.20195 16019.4821 14795.05565 17011.65385 15204.746 8091.21465 23705.7919 32147.2064 28505.69825 31229.22915 36206.30095 7387.40795 10668.2169 20364.2531 7487.5455 15693.77515 85720869 narg Nitrogen Denitrification NA Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 21695.4634 13487.5801 22318.5971 7071.7504 10401.7568 19744.8875 114656.2832 13352.106 14969.7672 12732.0203 371850.0517 25898.3953 16624.7205 13161.172 12310.0502 12310.0502 14135.6356 21617.5004 12456.8363 19854.303 19222.3162 20343.0583 20542.4 9637.0639 26695.9875 114095.0937 30239.5799 9942.0157 20651.4137 9278.5549 10842.7513 12559.8584 10473.2764 32680.442 385738833 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15601.5423 39664.9989 5426.7543 13376.7312 4988.3556 28751.0115 13006.4826 17676.8303 13142.8109 11291.8896 11568.789 294093.6082 32736.8893 12988.1372 18724.8409 14285.5391 14285.5391 7344.1685 75034.3924 11331.7488 21165.6667 46683.7217 15888.9773 9637.5162 9932.1331 13318.3705 10739.1606 59251.311 93037.5424 15132.3875 7116.7466 17353.5724 12011.6088 13762.8067 15686.7212 380732199 cellobiase Carbon Cycling Carbon degradation Cellulose Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 13189.1891 16983.3136 24000.6522 22467.5379 8123.197 18698.5403 3833.1894 6100.0537 17106.7368 16327.8774 213215.6806 9682.616 15747.8959 19162.9429 17476.2757 17476.2757 13822.8883 27389.5373 13407.6201 7345.1249 5135.6785 9984.3446 22576.7829 7148.1527 38666.9992 11576.0861 43424.6939 18378.9462 34416.54 14507.7261 9862.1928 19390.0478 6593.8879 17223.2815 318040336 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33867.3311 19350.2109 5532.2392 57434.1851 2690.5009 3514.0147 3300.6361 17546.7949 5183.9372 9985.0067 4562.5717 5333.757 4144.3512 3176.6404 3176.6404 3692.6059 9250.9732 38771.0018 5032.4686 7819.4301 3706.2848 4986.3555 6797.165 4390.7542 16559.5196 8538.4529 11205.5959 6129.5761 8040.1594 7885.6037 4566.1209 24659.0529 149378097 phdk Organic Remediation Polycyclic aromatics NA Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 5401.7865 2544.533 5876.2638 3242.5255 6188.3632 4999.5439 5330.6088 2639.4177 4149.2096 6008.0246 5881858 chnb Organic Remediation Other Hydrocarbons NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 26479.2008 281737.8357 8294.125 6808.0455 12245.7228 6189.1083 21598.6845 5120.3308 7388.7712 20408.9156 13084.432 685488.8434 10562.8191 34679.6855 19278.5191 10209.3171 10209.3171 7578.2985 38694.9171 14451.4441 28296.9772 21639.0429 8676.522 6537.5198 12145.6081 22591.2835 9388.1893 35053.3987 27626.0279 24161.3636 10946.9285 20064.7477 15694.5089 10499.5504 12632.6987 325536474 arylest Organic Remediation Aromatics Other aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 6061.8911 6050.604 10293.9712 2452.8776 34869.325 136351.7256 5067.1024 7411.9915 7411.9915 5654.9655 10309.6205 7396.3998 7764.0464 5171.7986 5289.9129 6782.0798 3106.3224 13790.0822 5327.9154 11431.5196 15162.1635 7477.5545 136397.4417 5032.681 344342997 rubisco Carbon Cycling Carbon fixation Calvin cycle Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 45146.9948 6276.0104 16208.5689 5074.9792 5074.9792 3309.5504 2190.2302 56315157 arra Metal Homeostasis Arsenic Detoxification Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 146930.7098 45988.7548 115607.6424 513760.726 144332.4138 71346.884 103885.5313 177716.6361 100366.3665 134650.9977 122595.8686 169823.5613 2914465.0435 250776.8793 181576.6326 187416.2385 117634.989 117634.989 287176.1726 326734.2574 105371.4245 98993.7506 219365.2602 85412.1193 167743.3106 105688.3287 1184250.6273 50293.1209 269322.4881 153570.9642 194183.1961 68971.6188 124109.9789 133032.1352 92765.0915 275061.3228 148273981 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 14772.0902 10068.4054 1694173.5905 47944.6998 26645.2094 10063.4301 13532.6823 8081.8748 13807.9211 11693.7944 8706.8112 436913.7 26302.5782 30009.7709 37487.1611 22320.3655 22320.3655 13331.5947 22684.3608 13035.674 13040.3296 40408.2589 11002.9234 7966.2797 12985.5452 32131.8051 6550.3755 37290.5048 15950.7712 33802.9155 11456.7324 11597.6867 21765.9707 13382.6725 19479.1149 152987507 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 57423.6344 218253.4349 22511.5111 12142.8619 14353.8468 7200.4283 9675.5105 22157.8571 12824.3815 17979.0266 396915.437 12650.2073 16130.038 43925.2679 21396.8083 21396.8083 8495.7201 31360.4014 9370.39 71133.6134 22748.1039 17978.0213 7815.2921 11517.0802 19770.1157 22260.6244 86098.6506 12995.0673 16711.0887 11984.3652 22896.7608 17607.7811 12322.193 19214.9702 288867288 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 11596.0466 22486.7242 4362.9427 4775.9562 6393.3667 6777.3572 3639.9659 86240.7402 7599.5198 5189.4336 21095.8271 2690.8137 2690.8137 22225.3349 8871.7159 12626.6987 6608.865 5619.8825 5756.182 2624.9382 4587.9529 6948.2017 2872.9957 10754.9286 13468.5846 8121.0569 3107.5144 4390.2246 6102.1555 2922.845 61390.2984 384419128 mannanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 10682.4928 28439.8194 319185.582 6496.4703 2748.4976 6276.5352 6761.2962 4138.7052 259853.1263 4887.0265 4998.8946 5590.3271 4205.0085 4205.0085 8806.7053 8425.7855 13583.9701 14236.5333 6994.5866 7455.2805 26827.7285 4195.1955 22029.4726 12113.1074 14822.8289 17104.4129 7961.25 10045.3745 4165.7188 8705.4341 294787352 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens F0305 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 151131.6247 121194.8651 92284.1302 93866.1199 55010.0116 42482.695 77440.8621 149861.7854 116143.3394 102783.9081 115345.1426 2016049.7707 92866.0629 501339.8012 91629.2498 99050.5239 99050.5239 76498.2737 113285.61 49292.005 42309.1243 96056.6961 254643.348 53646.6789 60847.5203 111211.7464 78832.3356 161135.7886 92598.4934 118806.3362 83975.7122 199792.5512 133450.8982 71148.0444 109110.9316 365257073 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 7662.0302 219544325 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 17048.2832 10903.3871 34204.1935 21929.4241 7047.1315 22740.7954 13542.1843 13726.6567 14587.016 24594.7747 9943.3221 427133.23 18022.4388 20293.8941 13689.6748 9311.2647 9311.2647 14380.3461 28451.1586 20237.33 19786.5068 19982.2886 68201.118 11590.9645 11210.0965 37648.7687 8267.2011 50786.0656 24720.4288 26186.5801 10799.5922 14808.2027 16919.2476 17044.1286 43036.1719 306529881 cysI Sulfur Other NA Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 213104.9209 100267.049 18865.3892 201122.617 591836.931 192410.7237 133194.8818 65125.7476 98603.5903 145959.7161 194285.2712 116228.3862 108944.9145 96278.4513 128163.9851 143583.2164 143583.2164 81518.8554 227898.6197 105562.236 129960.0962 247391.7963 127867.4637 85812.9659 102343.1283 160731.6432 104150.8284 317506.3797 357642.8623 168770.3878 103452.2613 354097.9703 145123.4547 322321.8882 158341.5175 317124488 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 6151.6563 296963.1104 11546.0075 11832.3387 7962.9183 14787.015 5802.4396 7034.4857 11456.5787 5862.4255 98816.9039 7103.0403 12912.3658 4778.2907 5494.9467 5494.9467 5786.449 9698.5607 4909.0143 4600.4917 14346.6379 10703.5531 3038.3984 3832.804 8708.7362 4435.2046 10077.7396 6832.0362 9788.872 7756.6667 7661.211 8660.2907 8389.4309 115260130 ara Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 21898.3537 6282.3123 4462.1781 14034.0555 27163.0904 3268.6197 6011.9036 8287.7207 121996.2628 8249.9712 7478.4393 62792.4697 2773.4935 2773.4935 61861.7706 10280.8324 3916.8331 6255.4022 3970.8212 2794.6611 6431.8322 10671.2137 5393.7346 12805.4429 7319.4177 10436.2172 7889.6362 6827.6445 7306.3862 6043.289 8242.4077 169242811 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 192628.4043 18589.7381 145598.2905 6901.6656 62882.7747 19208.0739 3734.7721 23980.6547 11713.8098 9663.2374 28681.6759 12042.3906 345373.379 25397.0823 24336.1357 42803.7848 42648.9498 42648.9498 7709.1551 19600.8873 17877.1722 5410.8182 17031.6045 7352.307 11976.7577 10016.1458 32527.5188 8758.375 33932.9516 26129.9346 27823.1644 20497.5987 17960.0207 15233.985 5078.9222 16678.7581 58261038 amyA Carbon Cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 17186.5769 4219.9484 12444.3935 3366.6427 2767.375 92143.2618 5403.4485 4488.164 6618.2396 4017.3086 4017.3086 8845.337 5354.1853 3995.9738 5158.1594 2918.1389 7314.1153 4440.9146 5405.7815 2476.162 2766.2471 3835.6822 5537.9841 302680432 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 40711.611 7697.0939 6697.7542 10536.6276 4614.5414 7867.5682 7548.2618 5928.7381 189667.2997 15549.4116 12008.8448 6361.795 4616.2147 4616.2147 6796.5257 17262.3508 11576.4027 11401.241 13780.6973 12948.1933 10139.2035 6306.9386 15027.2214 5051.7859 20414.0766 12502.7055 18877.1427 8816.3412 7471.453 13826.5428 7272.0669 9027.1127 386826752 arsc Metal Homeostasis Arsenic Detoxification Beggiatoa alba B18LD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa;species:Beggiatoa alba; 12291.9567 4684.4442 8074.0627 8223.892 1983.9969 4387.7995 10769.9544 2516.1271 166987.5456 6906.7972 6532.5755 5712.5705 2096.6016 2096.6016 3066.0367 9260.1095 6119.0237 5522.6079 7124.5368 8563.1205 5812.0408 3171.939 8811.454 4883.3582 12857.1943 3565.0262 7562.2519 4460.4744 8807.8957 7247.0145 4374.296 6625.0995 225412296 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 15947.0115 80530.3134 7527.849 5087.1973 6246.1998 6554.3769 128862.1655 42863.0021 10230.5257 4767.3865 4780.1234 7264.8423 9229.9056 5567.0658 3810.2359 3810.2359 6980.5915 15162.4278 46624.8836 34955.2093 10147.4825 11993.2524 5653.0604 8098.2102 13865.312 19450.8605 22277.1913 19487.7735 17051.338 8108.9 8020.2196 10561.5897 9397.9071 15929.525 169793460 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24300.0057 9471.9674 9299.4042 5825.8847 2861.9687 11050.1845 4062.4301 5168.7005 4229.4599 384103.8026 4021.6548 5450.0244 14424.0855 14424.0855 3415.2726 21801.2474 14906.477 8818.3104 7487.0302 15112.3403 2949.7874 5107.2522 11587.9471 5001.5425 13350.2015 12385.4858 14267.3891 6067.698 63914.265 5130.9121 4694.9087 7223.3126 386274919 cysJ Sulfur Reduction NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 22784.2122 7154.7166 8542.4187 13106.4426 6425.4204 8223.3382 8648.9438 11756.1723 6668.5907 5395.0847 115860.5384 11504.0849 11071.9304 12814.1486 17055.2791 17055.2791 4905.8413 15440.9835 7302.9004 13202.6446 8547.9256 15449.3475 4916.6888 4501.32 9421.2395 13353.2025 15225.6966 11265.2716 31545.4775 5424.7986 5856.2123 10342.2447 3320.5528 20399.7819 338975525 pcag Organic Remediation Aromatics Other aromatics Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 93131.8604 39466.11 5810.9445 10007.2497 8072.6661 7594.3555 29381.096 365328.5654 125649.8912 248007.7578 20846.1356 23318.3863 149324.1171 11931.2179 11931.2179 10333.112 23138.1509 14739.9157 96888.0299 17371.4634 191193.6788 9540.6031 16393.5279 18421.7645 10973.4272 47272.9123 35600.0968 18244.691 13051.712 309728.3071 14222.9313 10886.8477 18141.3146 327544890 tktA Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 40679.9515 12446.6536 12585.3454 343641.6583 15975.4632 61159.8783 13110.9013 26653.4497 46065.5682 38161.611 683819.3777 29761.8436 38628.8854 27098.4849 64056.9549 64056.9549 13853.5473 94174.784 55349.6867 184363.7677 21260.7898 90682.6266 18280.8397 21309.0014 34329.6581 81382.4324 57249.8578 96002.9273 40193.6043 133525.5545 33706.7528 41327.9712 33941.3703 57125.1719 153999551 ppx Phosphorus Polyphosphate degradation NA Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 10169.2217 7510.4844 9242.2835 6392.6818 8298.4293 10089.072 4052.4385 112524.1573 6705.737 7287.1701 5539.9669 19402.6007 19402.6007 5503.994 13306.5431 22438.8791 5808.1656 18880.6583 9931.6926 5880.0696 7353.2031 7216.6835 5330.0253 38445.2904 5975.9551 10384.9321 6113.9901 9316.7388 6143.8862 3724.762 8909.0551 403729972 linb Organic Remediation Pesticides related compound NA Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 8016.7111 10732.3899 15542.9917 8969.3673 4791.3848 5901.933 7997.2033 39350.4097 141926.2641 8373.1326 11354.8061 5883.2342 2603.828 2603.828 5608.3828 15050.3714 15333.7039 12727.986 10815.3978 12395.1469 5380.3528 5547.3625 15201.9452 4684.0466 22717.5461 13742.5081 13022.1826 7893.818 7239.5074 11041.8379 5599.9962 15473.9165 258593148 napa Nitrogen Dissimilatory N reduction NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 16178.0285 9486.3042 5988.5656 2137.6218 6032.736 6144.6014 101152.5869 7611.873 6091.6835 13660.9208 4399.4555 4399.4555 7956.8709 15434.0879 4468.0771 7868.6291 63386.0394 2281.092 9646.9496 18070.7159 41347.9085 13283.5663 15178.575 8387.958 7062.9158 10249.5259 3812.9228 5250.4474 257459626 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 27190.2271 383464050 xyla Carbon Cycling Carbon degradation Hemicellulose Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 50286.1258 15714.0423 5720.0071 6081.6844 22823.1004 11855.9137 46246.2033 12845.9963 16889.8864 164685.7068 21076.1459 30428.3838 12008.8509 18204.213 18204.213 8262.7607 43878.87 18218.3247 19330.3884 67652.9045 6899.2661 13764.3885 16889.9215 15283.5767 28576.6486 44010.3171 21991.7654 28050.4756 13590.9768 40030.3504 27882.8411 15411.4028 38574.0399 389698992 ppx Phosphorus Polyphosphate degradation NA Leptothrix ochracea L12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix ochracea; 4443.8998 5040.7993 2605.8267 4523.1214 4241.5206 154154796 terc Metal Homeostasis Tellurium Detoxification Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 62935.4595 11370.1431 51934.2776 57417.0038 47107.9957 14336.7865 21516.4375 31053.2825 18664.2747 26107.5313 46285.7188 17207.4039 1050590.5648 71609.3709 37438.1195 42938.8914 25797.9103 25797.9103 23232.0218 42101.2073 28039.5146 156157.0008 52691.6279 99936.0139 19577.5291 15815.6694 43428.3918 13842.5303 69400.1354 39650.8423 48378.9242 20968.1984 18158.053 20329.778 19784.4814 53962.9475 291299827 pcag Organic Remediation Aromatics Other aromatics Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 3958.8855 4064.1152 14863.9593 3579.9811 6228.1928 5101.8331 13326.849 2770.3185 30533.369 4470.0913 3094.5617 3094.5617 22213.4543 11366.6721 3889.4599 7211.6764 61694.6209 9045.7061 31455.4683 20089.2293 14377.2401 6264.0077 5351.552 69867.7563 3092.8893 315604709 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 49899.5974 15734.5533 11960.5344 6046.772 14996.0385 11952.5895 9710.3353 422170.4359 8838.1123 247078.5884 18879.998 20976.3903 20570.7413 9024.6234 9024.6234 10450.3114 33651.2514 13814.3519 32212.9128 37563.7946 16321.1568 18542.4761 15002.196 25719.0499 8949.0507 29654.3261 32879.572 21459.8394 5593.9634 11640.8157 13136.542 16937.4121 61378.3119 254460155 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9056.3199 41095.2643 7138.9137 10039.7781 5617.1967 5701.7834 6426.3633 53846.0065 5296.0241 15826.9039 6251.7404 140924.872 8614.4614 6573.7977 10470.1247 13283.9817 13283.9817 5525.9619 19141.7908 11483.1824 6697.9194 53099.3493 8507.3006 7171.1156 4861.3784 9193.5469 17052.2681 25815.8239 11658.8737 18903.1073 5482.8764 15474.2574 19350.9202 9527.099 188320.4715 343493073 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 112996.0482 12492.4905 15137.4722 6386.7261 12192.312 45323.0558 170958.4136 13310.8236 12453.6199 17480.0307 7345.352 382886.9609 17335.6936 16221.4288 12823.7095 39052.5225 39052.5225 11750.6148 42889.2081 18924.446 18813.5652 20873.7708 27451.2138 14668.6598 8575.0442 19466.2261 11594.4288 38544.9415 17093.4131 20575.8572 14677.7221 14575.3072 11267.9568 10467.8919 28262.942 410028346 nbac Organic Remediation Aromatics Nitoaromatics Marinilabilia sp. AK2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Marinilabilia; 4200.8444 40240.4424 3323.1226 2978.5659 4109.4063 3879.76 6057.0894 4644.8906 2256.9771 8413.2658 219722326 cysJ Sulfur Reduction NA Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 19308.1547 9943.0074 17068.7937 4713.3354 7965.6183 25420.2129 19782.5489 13168.7191 24434.9438 23745.1826 123770.8133 13111.6312 23722.6734 19736.0423 7991.1906 7991.1906 11679.1161 69426.986 16544.9927 18505.6043 41089.6183 43703.5182 36452.2792 18153.7766 71161.6302 29896.2137 77453.3291 32300.8309 21358.3309 22395.6927 63560.7501 29447.9414 36962.1493 32726.1867 84497418 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 6419.7801 7416.3764 3113.8627 3585.6341 3496.5366 68308.6889 5063.3467 12063.8604 2968.2806 2968.2806 3821.7643 5575.676 2591.9615 5009.3085 7484.0193 2316.6301 3451.2642 5441.616 74318668 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 14516.8543 103656.8917 15220.053 45593.8153 11918.7372 12159.1435 45012.5973 9719.4037 17132.3912 23988.3358 14304.7608 460640.9296 15831.3277 24673.6661 36449.2095 20800.0103 20800.0103 16838.2348 30169.5195 18116.9701 13628.1858 19414.0128 14454.0171 13745.4459 12765.4296 27552.2916 13171.7196 52685.9808 30789.9488 22594.9825 14352.5131 18537.1399 14475.2157 10152.1032 14433.921 345284346 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus ruminis ATCC 27782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7912.7241 2443.1754 6107.2729 6529.8308 8089.143 4390.8924 137093.454 6730.862 5959.1024 4010.1519 4010.1519 6206.008 19511.8203 7610.4122 9783.3284 16163.0035 10417.3096 3172.1111 5421.9671 11242.5306 3702.6003 39863.6988 11395.8909 12865.7684 4199.7873 6383.1471 6803.2381 3893.9979 14634.7961 341937521 amyA Carbon Cycling Carbon degradation Starch Xanthomonas campestris pv. raphani 756C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 18543.0819 8942.043 36079.5149 50182.4177 53408.7658 67102.9123 110828.1406 18139.0499 46663.2117 35723.5604 32680.7695 1116202.9212 626226.4822 97943.6713 110940.0385 78997.622 78997.622 27211.6931 673730.3913 44520.2184 400510.9582 33632.819 137704.5451 14815.2297 36688.0017 87566.4758 59715.409 106992.7053 70797.6807 70488.0362 36797.2386 58833.9818 41959.7021 31436.9703 50995.1262 40253015 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4060.4243 7292.2606 7835.2802 3940.5248 3174.1143 5939.4141 5281.0285 158657.3573 9534.6718 4848.6489 5763.436 1946.8333 1946.8333 4117.9137 9522.4401 8478.6964 6545.8727 8318.0032 14451.17 3045.7917 3581.2305 9751.4343 3841.6696 14002.3474 8205.7966 9238.6411 4211.6497 5254.8754 55825.7289 3676.5162 11133.3674 88864948 xlnd Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 17043.5545 11766.8979 9901.2477 7202.8807 19226.4087 30975.4435 8688.4578 13417.4696 24566.1993 374334.1142 16888.237 10361.3222 8486.8947 27852.1681 27852.1681 4312.6651 29388.0929 19142.9219 6117.9747 22779.8041 27091.1492 8650.3593 24040.1405 15607.8008 10605.0837 27793.6411 11653.2258 18811.3635 82440.096 12859.3339 13042.714 10438.6801 83927.2322 116251365 ppk Phosphorus Polyphosphate synthesis NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 21440.3215 4162.5238 3424.3416 5460.4112 11374.1135 13176.588 41978.8753 542294.4114 9588.6253 17339.1577 7308.1204 7308.1204 14212.7849 65942.4385 5827.4142 12395.8479 12645.9469 12867.59 12473.4299 12610.1858 10943.7068 7760.0587 25814.5608 15690.6952 23450.5071 33226.5322 18520.9287 9933.4826 5656.4113 8792.2548 170605698 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5563.4659 6517.6819 14360.1216 5339.6445 3393.2016 12780.9473 2334.4201 2334.4201 9567.368 9735.9426 2263.1573 10067.7171 4944.0135 9132.3563 2793.6136 8688.3235 4645.9544 2497.4137 49647296 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 9610.5479 38396.5273 13898.0037 5196.2536 8571.1736 7121.2097 6093.8301 3655.1172 9344.8498 15930.747 8979.3417 199327.8611 11895.2659 10217.8224 5183.6295 5711.106 5711.106 6233.3883 14327.0345 8868.2078 12389.916 8582.8964 12432.0291 3728.8366 4198.606 12240.8296 4209.712 21471.3408 7254.9753 14999.9412 6338.8045 6614.1659 5250.6634 9251.8604 9247.058 321163417 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 390055.7794 17809.0782 25930.8363 28141.1585 73985.3874 19280.037 45482.1651 41644.4569 35454.0458 56463.9459 62617.5801 58554.2942 1113985.3697 203772.762 81562.0836 107089.2313 43425.0154 43425.0154 51423.3947 73990.5676 79009.0151 26942.876 53236.0234 86194.0161 41013.6596 45052.6455 55051.7837 55548.5497 261624.9273 92651.4683 73198.8703 51659.1821 52426.3445 76749.2962 79289.443 112376.7524 229825383 pula Carbon Cycling Carbon degradation Starch Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 9569.5073 6006.2054 17516.4295 4541.4509 6067.5339 5004.6867 3206.3463 7144.2172 4269.6186 83463.2801 16986.1609 9048.9607 4975.5569 6433.6263 6433.6263 3357.8909 13164.207 5518.5337 4277.0889 5462.9328 8464.7731 3190.863 6640.8467 7462.9559 7186.2021 45198.1215 4203.4478 18009.956 3322.9785 8741.0515 10743.9181 3140.1899 5717.774 6978960 norb Nitrogen Denitrification NA Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 9445.7566 2013.8232 3315.7753 5051.0812 4339.946 19020.8514 11592.621 165497.8469 4365.6856 5300.5706 12281.5601 5652.8949 11689.0786 9132.4155 4781.4222 7109.79 4958.1068 3429.6314 7109.8438 3831.3413 11935.7108 13284.4046 10316.5799 4226.6605 6352.3491 3833.0747 8955.7939 332668869 rgl Carbon Cycling Carbon degradation Pectin Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 20571.6165 19750.3665 44753.8988 28865.3805 11931.1833 16660.8151 15391.9062 10723.5031 13539.1357 186236.4517 8997.5582 324255.2924 21459.876 17805.3527 19218.0843 37961.6716 37961.6716 16697.6918 23721.9903 13298.9662 23157.9848 38690.5118 22756.0932 9528.6671 11743.7476 21553.4666 15518.2887 83221.0986 12336.7801 25343.6178 10108.4022 35865.0391 13181.1004 9364.7552 23177.8136 14023848 ara Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 166796.4967 43379.3936 74722.4599 28038.8092 15401.3209 58311.7288 24836.3697 28078.5738 30895.5287 37959.1423 161385.1875 3340276.6018 293439.333 208607.4432 76886.0247 34642.8829 34642.8829 25329.7073 60984.7971 35905.3733 809436.506 69843.7482 61985.9365 37233.2593 39648.892 63293.2704 55076.5174 104228.4806 46985.2622 125839.3352 24192.1722 40476.5215 91218.1225 41323.1786 58033.7183 83318854 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6088.6313 3150.6141 4753.7146 6998.5721 2536.1649 2536.1649 7101.137 8239.0376 11222.0819 8577.2531 7931.5216 2994.8591 6293.763 11503.7832 12090.3165 11212.6055 15138.6643 4330.8111 5381.6117 2406.6419 5412.1911 387845490 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 4464.2749 2390.8353 4967.8719 5840.4998 4436.6477 4993.3341 2018.8388 2018.8388 8033.274 3808.2645 21745.7322 15172.8004 2398.6673 2640.9796 6424.047 115781.237 4876.3653 10322.9797 2290.8357 3150.8203 4329.2562 7013.2914 308057117 nasa Nitrogen Assimilatory N reduction NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 4400.1063 12263.3119 2165.8431 3992.6821 3174.4168 4206.1119 4049.1015 9591.7558 3342.7227 3342.7227 2841.847 5316.437 17868.3183 2919.5005 2643.9097 5812.5257 2169.8649 8723.483 6172.664 5938.4743 3379.3958 3725.079 3366.1023 2944.2574 261212865 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 19845.4178 13999.8387 24752.3222 26201.3073 16763.3293 37954.66 26019.6981 166943.3715 14878.4394 21189.0013 23122.4056 18650.4425 744240.1783 26380.9179 26833.7807 22216.2839 11186.71 11186.71 27005.5116 34990.9334 68344.1076 27956.5999 31885.8471 27634.2106 11202.2879 19468.9402 47918.1876 136056.1216 53224.017 146698.8896 40027.2014 19859.9188 20001.9132 57887.742 98302.9357 49951.7481 18034319 dsra Sulfur sulfite reduction NA Syntrophobacter fumaroxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 18540.1974 39704.6323 5106.5997 8009.4173 16522.385 25275.652 37383.7641 27486.6418 24100.9256 29229.2951 317024.7131 8661.4087 102737.1166 22730.0139 20666.7007 20666.7007 11853.8114 25635.4195 14693.6794 8791.9337 27543.5597 26253.8079 90953.2244 63830.3583 16569.237 24675.7192 109428.8559 32014.5707 33592.6598 13642.2051 23770.0942 20058.5407 50922.4983 24776.4692 365336966 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 207790.2983 15574.9586 32819.038 30722.2212 33503.5086 6827.6367 46971.8347 27880.688 27565.88 53912.4421 138819.8151 44705.3275 972641.2504 27686.4159 48224.6449 74013.7831 33711.6711 33711.6711 19366.9296 69474.7033 46328.136 26099.4988 83431.9379 48353.3381 45623.0187 54608.3688 83036.9366 28944.7066 112142.9412 45536.2331 43010.1057 31142.0582 53958.0563 49175.0436 26853.7913 62450.3573 198253442 ppx Phosphorus Polyphosphate degradation NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 279196.425 35882.4604 17936.5822 66708.6554 8419.1571 32151.5524 18557.4753 84201.0442 13387.0229 12282.2962 17255.9051 158553.8832 32385.2548 12137.8732 18190.996 23773.6781 23773.6781 17678.8065 22811.4953 14832.6981 12491.4391 14000.6019 9067.9517 7495.7807 24702.941 33562.55 22815.5617 49512.6277 14771.0809 28171.2897 11683.4892 29173.1141 15182.1792 14538.1663 11829.7067 212709122 atza Organic Remediation Herbicides related compound NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 260057.3702 76066.9969 14235.6 12094.9781 898929.5457 164191.1686 244318.0101 26545.848 10639.1497 18319.1093 13589.4603 542415.0538 84648.4768 21109.8414 16222.6882 21297.5939 21297.5939 10099.5326 83343.57 14959.6266 77754.7646 36859.9331 21268.2382 18710.8606 19934.1031 53307.6406 25877.0649 164758.8111 26422.1171 51419.7625 56312.2725 21310.9578 17407.9913 22199.3519 29036.8775 311905909 pme Carbon Cycling Carbon degradation Pectin Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 9913.8492 8046.2034 5703.7882 6796.6798 8438.8074 3314.5763 8372.7046 8734.8348 3657.0535 215501.9988 12509.2227 11341.2668 6778.4092 4121.2455 4121.2455 7808.6218 16548.8221 12360.8112 13464.9865 16822.0121 16637.7378 5387.7778 5693.6046 15676.1179 8333.2614 19348.1454 12778.2062 17607.2659 6567.1657 7511.6883 7850.0088 40089.4882 15430.8005 298554858 amyA Carbon Cycling Carbon degradation Starch Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 15970.8094 14672.5039 74691.4665 18118.7531 18448.4126 11570.6664 5808.2813 11623.3287 18049.2845 9610.6411 157870.5789 10357.021 7969.2548 9584.857 8897.3575 8897.3575 8065.4437 18585.2045 8763.6123 100242.5577 8141.0495 15549.5439 405440.2014 8153.376 13873.3998 4340.3766 41597.4938 19395.0539 11340.8977 29178.1155 8110.6113 13653.2614 13741.6134 9915.6569 371718777 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 159547.3747 6151.4901 75993801 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 28990.9021 21100.0001 30506.3759 33576.5796 6817.5834 24288.9806 35884.4023 17536.0438 27501.6942 26599.3847 15170.6171 803304.2661 28663.3229 35585.5613 21650.1314 15387.5998 15387.5998 16660.5458 44802.6559 31172.6421 181672.4055 43769.0192 52522.8325 51756.0755 15175.0645 37267.294 17209.2694 60042.4946 26784.174 37535.3451 19485.491 21318.7115 20714.4794 13887.8478 294616.4347 335441248 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 48511.257 18093.609 41357.587 21065.6624 50057.4491 7674.8039 65493.4776 12932.5205 9772.7013 9935.5119 27014.3507 9708.0683 609877.0141 14801.9979 22223.3088 14114.5956 46371.2043 46371.2043 6927.2412 25502.9137 21229.7619 14700.3166 33229.4167 27420.6947 7312.5773 6816.5899 15522.5602 74190.7432 38367.2587 13220.3849 15753.4024 21188.2699 58871.4136 11886.3102 10929.1 16048.9066 308083469 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 251496.9247 42344.4223 213747.6726 97384.3085 349152.1611 54509.7944 440735.1965 287733.5433 204907.3129 151697.8656 301434.0636 177390.866 7320911.0698 177077.7488 151761.7713 246370.7937 183081.3598 183081.3598 136093.4877 172916.1606 133945.0332 332143.0776 306125.3913 213241.7117 225086.0339 140667.1976 170619.7776 164786.5727 411568.629 214897.4246 188216.3043 119513.2171 205578.9926 135522.0086 204016.0681 783381.2278 119671220 nagg Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5641.9125 6698.2215 2983.0364 3104.0011 6464.8496 12660.758 13835.4503 4855.0207 5273.4929 7324.7347 7324.7347 7135.6969 3944.6968 2533.8166 8860.3415 6436.8553 3936.6208 4206.3259 5966.78 124110761 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8857.74606667 7628.1908 5826.70216667 10612.18765 4423.64456667 9039.2452 5390.37933333 8104.20686667 10946.08053333 5725.22263333 231463.3739 18108.3771 6713.87596667 5223.35633333 6389.69746667 6389.69746667 7179.41073333 14099.17113333 8176.1371 15321.2629 18266.96293333 10383.0886 4647.26183333 4958.3607 10695.27303333 20024.42846667 19019.4687 10492.82613333 14422.61503333 3324.61746667 21134.53393333 8225.59986667 5518.11723333 13181.48913333 374434506 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11293.8061 8010.8999 7885.9117 13768.1448 5997.0308 5754.3787 5156.6406 7870.1981 12136.0231 10579.6214 222650.9739 10356.5718 16551.3741 14718.7397 7201.6686 7201.6686 8966.5064 18335.0609 12594.3691 34138.1128 19105.1631 12818.6544 5605.3789 9547.5797 26839.9185 6237.1769 24876.6608 18042.9131 16120.5657 8006.9959 7421.7866 7832.5297 7357.3792 15991.7436 322370778 glucoamylase Carbon Cycling Carbon degradation Starch Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 6874.511 6012.5235 6390.3832 4303.864 2485.7238 32545.7539 6035.8103 12962.8881 313815.7013 9010.0316 26492.9288 36764.9913 5180.9343 5180.9343 17060.41 16199.2861 37839.2438 13033.2924 4289.9634 5070.6421 45561.1121 5819.7428 48734.6306 13572.7468 14985.2355 8916.714 8860.4205 13903.5377 5881.8832 4160334 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5755.1483 262394.4278 82688.9695 3999.9532 8455.9089 2821.6541 12148.6506 2684.6077 4809.5233 4837.898 2614.4043 95518.9591 7216.5823 4020.3629 6671.8738 5257.5359 5257.5359 3303.697 9225.5723 4688.6288 4775.0724 5175.7823 6392.9753 2988.3113 3923.9533 6664.7787 2688.8458 9478.6298 7433.6952 6859.1876 5216.8789 7267.9725 4240.6308 6688.7872 254383540 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 269682.3024 9253.5545 8149.6956 15800.1953 7107.8519 6505.2392 5516.3939 6415.9346 16541.1987 25479.3525 26406.964 153422.4597 16656.6709 14073.5604 35068.1101 8024.5171 8024.5171 12293.1741 44857.3478 64752.2637 27533.1583 18474.7847 15472.1081 6325.803 10526.1777 18517.9906 9812.607 34271.6005 9069.1745 21081.0869 4934.8118 13260.781 17531.8632 9370.4191 195990.8432 403380478 nfsa_2 Organic Remediation Aromatics Nitoaromatics Paenibacillus sp. JC66 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7993.7182 23425.8798 7254.1447 10351.8223 8341.5941 3806.0697 4950.512 2721.1456 6519.9572 6168.199 3570.827 136161.7624 10097.8952 6269.2535 6065.5161 4660.2893 4660.2893 6079.6245 18127.2965 11271.9248 9535.8516 9915.3233 10543.2246 8734.112 5144.874 10775.9287 4745.4062 25873.6606 5844.3905 13787.2735 5208.4847 5789.052 6659.7826 5357.5984 16294.6643 306488211 nirs Nitrogen Denitrification NA uncultured organism 31895.9968 21099.4463 6995.6568 4797.8849 48774.3562 14413.7648 9700.661 21659.3219 10515.5318 12594.2047 193505.4808 13225.8179 13262.7532 389241.1527 63871.5284 63871.5284 6025.1623 34574.5426 9815.2869 260373.2454 75560.3121 16079.8062 6181.3396 8738.6266 18718.1389 8718.3499 73890.6107 9588.5341 26099.4189 9961.9815 13252.4829 51715.986 16804.8252 30121.2559 312959927 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 11473.5883 8093.5257 4780.8705 10838.5865 7201.797 8146.6768 2985.0541 8624.3511 12634.2521 5289.074 120342.078 13686.9634 12165.5145 17076.5962 9326.4044 9326.4044 6917.7951 12011.0066 6885.7063 13445.9234 7517.0048 8478.3687 5334.8056 4926.8611 28403.7534 14966.6013 14163.3966 14583.1734 15955.8812 6351.7507 5732.5975 7738.6223 4838.4819 7923.9502 56477459 terc Metal Homeostasis Tellurium Detoxification Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 50048.5663 97125.2049 12269.0838 29375.5913 8235.4419 24199.1811 16221.8385 18833.7509 29121.9291 19965.9494 10562.7343 355688.3552 31107.2884 19841.4598 25224.6955 9682.8344 9682.8344 15534.0041 26654.1083 21722.2489 31444.8349 25326.5881 59059.5079 32448.9002 11821.3636 40101.963 20276.8004 331553.3558 32722.2339 26120.7138 14233.4371 14849.322 18553.5712 12987.2359 30387.5898 225194133 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18033.4586 6904.0488 8741.8741 6810.3574 3731.1629 2467.0236 8770.9508 10803.5389 4903.6816 156385.1254 12108.1648 8435.7397 7457.3426 7354.7148 7354.7148 4953.7053 11883.5123 13555.5831 8652.7976 13879.0662 7203.9291 7563.395 5169.0899 11722.2706 5615.2466 17102.5305 22310.9634 13530.4093 5003.2778 11335.7607 6856.8051 5057.5886 11632.4251 139003172 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 47893.3332 19170.525 64028.2887 37812.7518 121376.4721 19056.5599 29030.7433 62128.8401 22065.7539 49091.7299 20252.1681 650773.8219 34324 32932.9229 37999.6716 27857.8076 27857.8076 18181.7298 53829.9829 26257.832 26512.4525 31298.8482 31505.8063 12789.7829 24747.5774 93919.6905 42106.1495 109267.4757 60763.8863 33166.4889 23197.458 34223.4419 32800.2728 20321.7652 24680.7296 117923739 b_lactamase Virulence Antibiotic resistance Degradation Magnetococcus marinus MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 20320.1363 489646.7589 10059.6508 19505.4446 33223.1447 2819.1098 6901.3776 4426.6135 5476.9305 4561.7446 18104.1326 126950.8136 10289.965 17642.376 8543.4694 9792.7671 9792.7671 5842.2076 7224.2875 6206.155 6241.0883 9052.8067 7677.4698 6889.0784 17365.7908 15052.9234 6396.8577 28332.5184 9086.1646 13252.0821 3501.7587 7917.0502 11928.4047 3059212 bphb Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6612.548 7285.8223 18407.9716 8236.4855 5325.3415 5589.1607 6873.1822 5746.6566 17317.2971 4878.4615 145152.3369 6546.3385 5841.365 5734.2185 5446.8702 5446.8702 11183.5358 9690.4424 7167.3984 7801.1891 10096.1061 7438.0323 4703.601 4231.7443 11593.9894 5990.4077 28025.0017 8685.1008 11101.9289 6017.6536 5030.8937 5796.2571 8086.6613 11086.9085 255301038 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 15031.77305 32807.4386 7244.4351 10583.6619 8579.2167 4529.4801 9650.2963 10549.24455 12916.51755 31650.2068 8533.36145 6414.29965 6414.29965 6635.9315 20904.6603 11047.03085 16410.55245 14074.5043 18505.20755 6690.9978 6901.2941 16215.16915 7588.36815 21942.7864 14579.96385 17054.1626 16239.61435 12907.58355 7194.5438 20417.0961 328938649 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6674.0035 34615.3844 27962.0819 19019.0173 15906.8333 13977.0297 8621.0153 3150.1052 14936.7909 9215.1979 6691.1551 183026.1436 8018.7434 62865.5579 16383.6221 10380.5689 10380.5689 7183.3021 10181.6058 8682.0851 57807.5409 4208.9787 13158.2702 11707.2615 8978.6231 16177.5479 5967.1709 20256.8973 13671.6843 18536.0423 11150.7385 11404.5991 10952.3355 6777.8764 9542.4365 89512896 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 387978.9254 12720.8147 23265.5174 39654.5949 49841.2011 32322.214 22020.0813 7811.2586 25295.5443 24223.5023 26790.4676 462568.3117 30672.8502 29377.5091 45016.662 22625.7326 22625.7326 25733.2376 31257.2695 22895.6154 22542.6285 69880.3843 36079.2566 13859.327 35458.0094 30316.7208 17258.4843 98277.9995 34646.2768 33636.497 12996.318 16920.9075 21911.9077 19119.5488 28943.8904 81168197 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 16425.2342 13338.6236 15686.9706 32309.6994 9658.6751 9660.0935 24349.153 19038.6888 17638.1271 27257.0047 75711.4683 449213.6944 31682.2106 37831.9595 19540.8042 27162.93 27162.93 11284.1167 26037.2318 18658.0267 15145.9627 66648.6018 20658.3046 15028.6573 10531.9735 26313.671 44755.4675 37050.154 35905.9497 33012.1361 16318.1266 15551.1176 21201.3398 11763.9307 23944.2271 161391954 dmsa Organic Remediation Others NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 55487.7506 132364.8461 21380.185 17017.6678 5163.4018 326445.5745 44690.0043 23090.8298 39814.6609 42402.7055 45636.6145 818478.498 142864.3893 108224.6827 143137.0186 112906.1518 112906.1518 160696.7045 83258.4318 93343.5741 279791.4834 295275.673 65834.3386 32427.6216 50162.6581 384900.6095 55232.3413 134963.2447 96271.6312 200858.9105 63444.9669 68581.9138 64875.8695 38327.0553 77310.0175 350568629 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 4600.5855 6153.6389 13817.7752 34545.0121 10735.0266 4670.0857 3210.2652 7798.3594 2487.2988 95181.3997 6574.0964 5177.7254 2604.6376 2604.6376 4260.7755 9074.0694 6239.9751 11868.6733 5497.0763 8980.0392 2244.7309 4880.2083 9838.423 3159.194 18337.8472 11316.3539 8865.8063 4736.6571 4746.2891 6595.5306 5908.2336 6030.5972 116670259 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 44820.5763 18969.2942 7010.989 21940.4914 5267.0303 21213.4202 19378.3664 9694.116 17073.8024 31316.0017 21397.3581 347976.802 16218.9403 23044.6035 28564.8802 21216.8095 21216.8095 27565.7153 76973.1791 25126.1092 26604.9163 42299.5436 25445.0415 15886.2789 19871.7843 42629.7885 26682.9961 53259.907 24590.4392 33082.4622 11086.366 24573.141 34692.0946 29038.6649 16600.5281 387889307 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 3938.1098 17059.7061 9806.3538 2236.7735 14598.0823 3370.3253 9572.9967 6789.6774 285951.4205 4513.5595 4544.1808 5716.8135 4199.7825 4199.7825 5235.8734 5354.1961 4135.1408 3169.8312 6077.0498 13815.3999 15892.9132 5823.9926 2298.8658 6286.7884 9400.8802 6122.6881 7144.8945 322515475 cysJ Sulfur Reduction NA Actinobacillus ureae ATCC 25976 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus ureae; 6161.3987 9985.8555 4784.9587 5530.932 84753.3682 6366.0522 2401.2221 2401.2221 11952.5399 4093.946 12397.016 5199.5676 3063.9069 4355.0511 8176.8749 338750971 FBPase Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 7762.848 6282.9418 8198.1658 2563.6877 9448.9021 5772.3519 6824.7776 7508.9387 7054.9328 7054.9328 2472.1151 6152.3072 3633.4413 4951.8231 3300.7002 2376.4112 4970.7159 5309.4422 17427.8331 6426.5585 5209.1831 5026.3215 4641.039 7377.2182 2496.0667 11362.5969 14280550 amyA Carbon Cycling Carbon degradation Starch Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4499.1722 181311.6391 4177.8379 3932.1083 2671.4177 85440.7264 5218.3258 11615.3504 4510.1784 7271.9394 4265.0342 7377.3772 82044.3218 3248.8384 2884.3627 2452.9002 17955.5426 3975.0073 6479.8504 6225.49 4480.5392 8355.169 2258.7327 10955.9027 22596902 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4931.5344 3809.1152 93038.3853 2406.9601 2406.9601 5144.2534 12740.1199 3154.49 4822.968 4473.6817 5275.5097 356876479 amyA Carbon Cycling Carbon degradation Starch Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 7785.1758 39169.887 9724.2973 10216.3689 31104.9964 31072.5395 4299.4421 20188.6827 237985.9942 3564.5724 5278.1742 9922.2685 9922.2685 9583.5862 3671.9707 40875.2166 146470.6181 6366.4769 10075.8629 7433.4795 11976.0777 6519.6499 43247.8752 14438.174 7905.7235 2122.3115 12478.3514 7504.037 2537.8761 17953.6928 306517684 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21839.0054 22149.5497 15379.9605 7610.5523 2088.8381 8652.8876 24165.0627 12742.509 16046.7293 36645.8712 124657.1543 33678.8932 25579.0819 19662.3438 28639.9133 28639.9133 204089.2719 22473.807 12974.7866 13581.4283 53694.3874 12271.628 18543.6947 14597.8951 21583.1216 10835.2026 43253.9568 39916.6743 34375.6534 6920.1941 12869.3363 23467.1998 20061.4273 15484.9913 19115313 amyA Carbon Cycling Carbon degradation Starch Schizosaccharomyces pombe 972h- superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces pombe; 5020.102 91977950 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5103.6851 16040.5343 247962.7255 151727.0569 6426.7221 3324.022 6204.8623 7482.4061 7637.4649 4669.7844 4669.7844 40560.6596 10645.6137 5004.4628 51973.3769 14807.9706 5521.2419 60209.4989 38114.9235 17306.6292 4732.1393 6502.3826 3932.4143 13701.2068 3970.4347 10923.694 407886153 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharothrix espanaensis DSM 44229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharothrix;species:Saccharothrix espanaensis; 165501.2061 38484.6876 169157.5448 144959.388 201982.5102 97169.5558 117845.495 126447.7333 71655.1121 99000.5243 133703.4439 88193.8498 2696370.3735 112197.857 150896.45 153147.6331 94740.7594 94740.7594 63786.1707 119140.486 92847.2331 142367.4349 133610.2371 162117.3716 58214.9713 54215.6479 103415.2462 92359.9303 259817.8765 95033.51 129058.0048 75516.2465 56250.5575 78127.9354 63347.7866 128936.0998 155964459 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 5731.2653 5431.9648 4989.4776 3629.4237 6892.9474 4143.4813 5073.5156 2294.3548 53153.3076 4949.6324 6727.474 4335.8266 2097.032 2097.032 6129.5412 3495.7786 4393.062 56307.9897 6225.7883 2193.177 2658.0027 3842.4369 8065.089 4896.3055 5989.2857 2307.4 2753.1166 2834.7817 7724.6211 295675749 urec Nitrogen Ammonification NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23947.5238 117415.0133 9933.1457 18390.3399 12741.0153 11248.2405 7648.7728 13632.1907 31875.7777 9868.9505 30111.8098 8987.7081 322956.4685 21795.9458 17254.5682 13392.1148 8694.1255 8694.1255 10354.5449 27467.5146 22959.2184 18045.6309 89825.9078 21068.7486 9404.3051 19433.1555 21514.2097 56179.4002 70031.063 32053.813 25203.6274 49584.1143 25848.3007 94648.7401 11018.3369 29046.4867 77383191 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 45925.9844 14233.0036 14171.903 33805.9964 36018.1714 11187.5946 31643.6552 10458.3165 27886.1694 42323.4736 51579.2871 276760.5506 24880.7607 74662.7561 107959.2064 35972.696 35972.696 22572.1877 40721.4101 20929.7949 170977.2023 14377.0741 12934.4487 12103.3123 19761.8585 19083.2106 21236.3279 209804.4872 23489.0028 23509.1202 9602.6769 23283.1369 34033.0158 31423.7118 35379.4391 169007681 atzd Organic Remediation Herbicides related compound NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 10869.3318 3118.594 3966.8931 5848.6501 7456.6549 6400.8271 3998.6296 5470.8191 4834.6978 4834.6978 3353.1356 11840.1163 7889.282 8088.597 8984.7329 4609.6126 7271.386 6412.1948 9167.0418 6008.7961 24948.7202 8149.8157 8610.7515 4597.3534 4701.2811 6304.1193 4487.2625 6000.7163 182415898 pme Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 12900.8645 4707.4263 6016.1935 20738.0738 30382.6132 18187.7643 7862.0613 3064.3128 6668.3077 4779.7942 148737.187 5648.6161 8123.3462 12787.9461 15165.1216 15165.1216 16449.4203 9000.731 7961.6882 9981.8983 25699.2651 7341.7991 61420.9947 6268.6388 24683.3852 781226.5092 3996.5059 14924.4745 8292.3254 4705.4998 9454.0747 6949.346 5406.2832 315622785 nifh Nitrogen Nitrogen fixation NA Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 32329.2084 14494.8311 41248.6244 7125.6389 7498.7804 4942.4925 9418.3127 9400.9656 13630.2929 38069.3686 13462.4814 425383.6419 49751.5488 16884.5762 13388.5122 38371.6979 38371.6979 10478.4854 23099.557 12009.208 34200.1186 37137.2229 10856.5874 7505.2569 7425.7875 18259.9085 28822.7316 675165.0175 252952.8073 14840.824 8585.5352 14526.3927 31329.1685 4462.0317 18618.7191 387221228 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II 'C75' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 31568.646 14559.6332 9552.7353 2570.6104 6367.4015 11033.2108 27805.5865 11600.3683 226806.2863 12254.1041 14238.9898 12615.6954 6125.8036 6125.8036 7871.1876 19195.1307 14460.027 11062.9522 9759.7653 12805.9884 5896.1671 7875.7137 110492.5664 7667.7307 26226.6894 20769.568 19473.2509 6204.9682 14120.7449 15686.0516 30312.0239 7512.363 380244459 mcra Carbon Cycling Methane Methanogenesis uncultured prokaryote 5706.0364 5522.0356 6196.4161 4847.6686 5619.5649 6988.073 6489.157 110821.2654 5576.2762 9171.6983 3229.6367 3229.6367 4013.4712 11351.096 6482.2851 5205.258 61130.853 3935.6822 3365.3379 4954.2573 9619.5678 8726.8407 13258.9573 8419.8864 4236.9189 5652.2613 6715.9016 6051.0735 6242.7946 194364165 arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 5790.5503 7535.2278 11649.8941 4825.1425 3288.1864 11140.1628 24304.6725 83540.2317 4017.6625 15609.6398 7958.2303 12447.5754 12447.5754 10225.4909 6227.0671 5013.0125 13725.8715 5514.8823 5317.2338 2207.8615 8459.5843 11580.7588 14651.469 26952.8214 11407.3616 20845.9898 3932.9866 7360.0261 30949.858 11001.0992 4434.2216 13172282 catechol Organic Remediation Aromatics Other aromatics Streptomyces setonii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 52502.3999 66875.3051 19561.3563 72287.914 197134.4081 39212.8592 36783.0466 34964.0511 23183.4161 52055.0682 46993.1172 63082.4021 1202348.4892 93906.2642 91401.8021 79829.3301 95655.8386 95655.8386 50922.6114 74537.2372 45370.4877 22795.2273 65454.3919 57315.344 71188.3138 97877.9769 81961.4971 48415.9748 109430.3193 92214.9729 253142.3934 45548.3914 92902.5614 34407.9254 22295.6387 51726.0067 270333261 pme Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 4969.6105 32534.768 4843.4265 7563.4468 5587.6214 5916.1874 6801.6529 8811.5204 155391.4631 5156.6904 4814.4228 6404.7073 6404.7073 5710.0394 10769.0799 10266.1413 8354.5814 6386.0773 12531.0159 10417.4504 3802.4869 8981.1428 11115.9503 72997.1443 6180.1396 7697.3681 2617.7246 6275.0694 8470.7914 4671.9791 8767.6125 156059270 lactase_fungi Carbon Cycling Carbon degradation Lactose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4014.2102 60461.6896 5548.0766 3996.4987 4019.1062 2036.4287 2036.4287 5765.979 3258.5086 2107.5927 2764.5417 311229240 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 42281.9788 36863.4761 9190.0287 26584.0033 13728.9739 7406.9838 21394.2673 8893.6325 21890.0759 33839.961 15174.7112 645402.7807 28165.6567 41138.9472 22965.4443 24907.1028 24907.1028 24713.8019 27804.4122 15599.8066 8035.056 39523.7832 35177.8133 11515.0777 12404.1027 20628.4173 11239.4908 52054.7766 41273.0682 33795.1052 10711.252 13195.5829 25833.5646 37911.5549 190701.5648 146409401 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 156276.4429 19358.6571 108370.7251 414070.1378 815530.4895 104158.222 59060.4753 182846.6455 142580.973 115313.1418 425237.1798 122202.3594 413500.7677 233713.2895 510100.6101 268198.8825 235225.2237 235225.2237 193465.3468 196417.5188 95593.2099 245609.2753 234254.5489 204269.4413 84150.6018 96688.693 306335.8646 99005.3722 388998.0696 263231.2562 272292.5707 93226.1152 128352.964 134947.4111 66127.9117 139495.159 292677084 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 18593.8673 15547.1768 5976.0946 8444.3909 5348.3411 7202.4488 11720.4578 9909.7016 57220.0075 45522.9448 19730.1072 68329.1005 12842.7795 30336.1162 35087.3285 17259.8494 17259.8494 7953.5669 16992.8929 30838.3003 22071.6637 23796.228 36892.0121 13643.2313 14747.6418 14937.0092 8378.7428 29145.1181 413036.1818 15370.0918 5049.5347 17130.9379 43004.6858 8386.3876 20314.2713 333488466 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 94860.5321 9727.3274 5568.3147 3264.2893 2990.5205 49484.4525 3132.528 359424574 catechol Organic Remediation Aromatics Other aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 39931.1084 28261.1717 38700.0965 51056.9817 570357.1297 53591.2137 13517.3732 317977.0808 23953.0707 46585.5642 48461.1819 43812.24 802211.0898 845380.609 72777.674 49787.9781 52936.7693 52936.7693 26964.8884 79746.4881 38686.279 26075.192 25643.4921 88105.0986 67818.4976 31439.7213 75974.2484 39786.9108 107246.4912 102514.115 104049.3721 41382.7707 42809.8003 46090.5822 35784.7983 24580.8587 400193762 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Morganella morganii subsp. morganii KT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 48895.263 19213.8928 14908.9599 340007.5707 17048.2791 10124.0876 26024.0686 152563.802 50427.1668 23504.7657 38140.4492 23894.2886 459149.6195 31862.7647 49906.9459 85155.4188 44126.6523 44126.6523 17629.9803 32756.8559 24752.6282 130590.6417 117336.9376 35963.4093 66018.126 19180.0138 155335.864 133842.7158 93891.2762 93622.6329 36434.5687 22445.534 29919.4595 39530.9507 104005.6979 55101.6081 421953068 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4985.3143 22312.9377 4968.6762 8418.3598 29550.0083 3456.001 2419.2426 72601.0357 7859.5568 6283.9181 7320.1194 6647.469 6647.469 4208.7396 3545.8814 3955.3935 2903.3898 6978.6015 3084.5567 10413.5401 5349.6758 12529.8731 30105.4187 3353.4263 3564.3347 3987.3485 388258673 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 4894.8379 2605.548 4128.1582 13326.1766 4141.1169 5828.8366 5524.4352 6669.5352 7812.403 7148.0658 2260.2222 6081.7958 9379.6737 372278577 alkb Organic Remediation Other Hydrocarbons NA Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 7178.1684 8110.9444 5538.9511 7325.1569 4070.6361 5835.8589 3213.7043 8648.1919 10313.0906 3159.1243 132518.7124 8298.2173 6211.068 6279.8597 5360.7032 70421.1554 12504.4347 15071.0758 28091.3079 10137.6651 6859.0024 3568.4281 13893.312 7699.8389 53282.7126 13956.1874 17389.8828 4571.954 12091.5715 9804.381 25791.2327 18584.0871 21220991 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 66305.9511 42232.218 132537.0522 13987.6481 11789.5617 52848.1344 61237.265 22941.1929 35867.8289 406076.284 34640.6431 649809.4303 34587.7256 130910.4525 43407.2988 55869.194 55869.194 21330.6358 119597.3104 31620.9153 35253.8297 108219.1328 56657.3395 29726.0776 38709.4044 41973.889 48519.0073 172280.3613 47381.2556 49973.1265 19532.2438 35240.4089 66139.3247 36630.3519 49984.2644 108798649 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7762.9581 9506.4676 3600.4149 2220.7857 3588.7803 5514.4845 104818.7836 4786.1191 5460.7922 2645.025 2645.025 2567.3693 7841.5966 5589.3879 827844.6338 6589.4108 6668.7388 3022.3162 7050.5004 2987.566 11402.7546 6780.9553 6933.7629 2392.5314 4399.0013 4956.0978 2455.3699 7086.5787 365813767 chnb Organic Remediation Other Hydrocarbons NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 51928.2867 45241.9425 23735.7136 22598.5827 6057.4965 27167.6791 20293.0051 17248.6391 40077.7395 39946.8803 27177.0805 986841.0838 46784.1737 26392.725 33785.0996 29359.0625 29359.0625 22235.8748 57372.5934 37623.4776 73460.6798 39198.1397 32472.5273 31144.6165 27133.3499 31597.7694 38230.0168 746778.3588 39297.5225 54509.3385 18909.1821 42637.0124 45347.844 25886.6554 70246.2982 404446791 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 5002.989 7400.1315 5823.4095 5058.8052 25650.8983 5767.3673 9753.1077 100707.7936 5639.5959 4618.6892 6255.4568 17988.402 17988.402 7840.2848 5813.7452 5094.9775 6838.0049 4654.0029 3421.638 5166.8362 9416.7487 4918.0935 10887.5215 7535.9371 5736.911 3013.9071 8094.3164 5053.3387 3335.4229 163811725 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 4749.7804 16634.5109 2741.2833 2945.4164 3503.2502 261927.2716 4605.0872 9872.5111 30709.0309 30709.0309 4326.1001 8050.3013 5249.4182 3842.8095 2750.6897 83927.3135 2230.3941 7543.3068 1941.6337 8068.5941 3592.9403 8718.4478 60476243 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5508.6472 3070.377 4180.7371 2770.7832 5267.8167 96181.5271 3996.3244 3941.1966 3465.1575 3465.1575 4240.7319 6490.9559 6687.5415 4611.8733 5720.4122 5788.2882 3258.918 4768.1507 7763.2341 3567.4015 9812.0314 3967.3881 7135.9251 2632.05 3939.8145 4915.1677 2560.1945 5505.2167 407255075 atza Organic Remediation Herbicides related compound NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 9382.1082 4434.1847 7333.0909 3671.5996 6253.0516 7524.2696 21672.6705 7339.8289 8633.3511 99801.2972 13166.2518 12549.1327 11241.2652 10038.8609 10038.8609 5970.5393 17958.2553 9234.8717 21482.0491 12376.0888 12770.8205 3781.5484 6531.7042 14514.0729 3873.1278 30750.8457 14188.0837 24493.0338 8992.7624 12369.1976 26521.325 7601.7781 47789.8371 55230727 narg Nitrogen Denitrification NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 8884.3643 17588.5473 15293.766 49675.6855 39621.343 46219.7295 20190.0131 13474.766 6456.6397 27065.5539 8736.7998 217022.7723 25874.1715 15524.8292 24774.3843 10811.2305 10811.2305 4647.9413 28994.3873 9071.0922 10795.238 9479.1699 11116.9624 37382.4597 10721.9324 16305.8156 8529.7358 25728.1555 23725.82 23217.1056 11948.3508 5954.0625 18301.9254 6573.2788 7918.6838 152984294 cellobiase Carbon Cycling Carbon degradation Cellulose Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 15943.4586 6671.5153 10788.0152 28083.436 10473.6928 6908.386 6511.4154 11054.8358 11025.0254 15782.0474 13848.0629 189736.6247 11526.9327 19665.1635 33327.4857 10795.7875 10795.7875 7196.0311 25986.9033 14306.5598 7954.3502 16274.6413 9489.5682 7025.2407 14805.9678 21173.7399 38754.2437 41789.9363 21381.3814 21225.7636 30058.2748 11096.9573 9421.3671 6533.3584 21032.8011 76577576 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9253.29 10349.9324 2756.1088 2977.9961 6119.1322 1758.3213 3289.3574 3175.3597 341926068 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 27196.2259 13223.5798 15900.2655 85917.6275 46324.1062 21405.8409 32895.0542 27244.3202 11819.8955 21105.1835 46177.9085 24686.893 626441.5595 30331.7648 34064.0414 18027.2558 28983.3768 28983.3768 28419.5733 63557.888 33912.0658 24502.7345 1322198.7739 18834.1143 40050.5706 37851.169 57255.3469 15515.4669 81579.3377 54892.1883 45375.7434 14924.7706 25983.0873 24345.5461 12165.0852 29081.4408 365747378 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 366521.3474 3513.7443 2817.1012 45386203 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 57349.2452 139052.1666 228483.8139 53202.9687 15548.5113 210304.5129 698644.4808 35956.9472 62130.2287 126166.4878 100141.551 998660.1458 139784.7625 121299.0299 64295.303 66340.6431 66340.6431 37118.0314 201656.3272 52871.6714 163041.7339 135520.6776 161482.5509 69042.8251 308628.0712 89385.5341 44861.5604 414437.3184 145682.4112 138645.0327 126877.6126 139418.8126 157445.9686 57190.2191 115748.3072 109452530 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6021.8526 11245.5125 2912.719 71211.2277 21650.9173 9825.2662 6511.9004 5921.8185 5009.6961 2657.1419 2774.1002 16383.7566 4000.122 11012.9449 6645.9637 5911.1408 4774.9774 4290.382 283784218 amyA Carbon Cycling Carbon degradation Starch Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 8192.6761 7566.23 15230.8178 10888.9378 42314.036 5851.9276 7434.5527 5317.7624 77988.2434 4419.0235 5436.8362 6992.1624 6992.1624 5805.4314 12494.4144 8180.6583 7257.8596 4211.6446 4800.512 15747.4225 5004.4007 18767.2876 12508.3935 12610.3788 3784.5387 4823.8551 5371.6601 3802.9436 5633.753 379257195 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 25188.2762 16393.1984 4747.483 1872.2131 9586.8515 36823.0889 2371.9371 62496.7792 6985.2657 4170.0979 2129.9385 2129.9385 2795.6189 5351.3077 6895.9495 7357.6627 5342.967 4636.1924 2865.8588 3100.1286 4700.4356 2377.9771 2812.1083 3970.2021 3451.955 8388.7502 355336333 linb Organic Remediation Pesticides related compound NA Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 12955.5917 6911.7863 16332.7619 9198.3541 20770.6624 17037.3592 7521.5142 11868.1645 12022.3397 5361.0041 334477.7313 18500.4373 18235.0763 10124.8418 5585.7379 5585.7379 10139.6473 13901.0503 13963.8454 18740.0058 12189.7051 17583.7149 8428.5981 6938.2772 19961.4774 7828.53 28750.5065 14048.2575 16861.4247 12193.2084 8333.5488 9563.5027 10180.2654 19344.147 332994780 alginase Carbon Cycling Carbon degradation Alginate Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 4360.2896 5621.3062 14511.6243 6452.5113 2247.1604 3532.453 4480.4683 129305.8263 4524.5552 4625.6539 7262.2663 6515.0664 5726.5817 5357.5004 4323.3903 9776.9626 2389.9356 9778.7418 5836.0084 8018.4704 2740.7625 3456.3814 6411.3236 325676558 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 20966.922 6093.1604 328589.4653 142944.4128 47483.8312 80371.9015 4572.9987 9440.1292 11254.4742 5767.57 220679.1979 12041.4375 17989.4395 4801.8306 6846.645 6846.645 7038.4037 16841.7806 22786.6332 10410.8591 13912.1586 13260.9136 40322.1552 9664.6157 18594.3658 18750.6629 35613.6632 15105.0799 21844.462 8020.4877 8176.6403 10623.041 7538.817 21720.8508 403728690 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 44658.3019 34907.0439 19342.2398 37707.9898 5689.4326 11586.3396 25904.9866 112950.6261 105295.8988 23995.2908 302179.4385 5574805.2529 36330.0386 77733.8308 233984.5936 76427.2135 76427.2135 323104.6789 695765.1897 600528.9021 15902.5656 35131.0039 34467.7642 215495.4081 432373.8257 608489.9197 85553.6592 1181449.7823 575219.985 772012.5129 18151.0864 378578.9215 393004.3771 43590.334 31904.0752 183582047 urec Nitrogen Ammonification NA Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 421214.5956 75101.5095 412697.1495 389539.6462 77414.5119 20476.9405 71985.2123 61061.2299 134221.1307 95077.5187 214392.6116 182967.3455 2878067.4694 73448.169 374856.1922 362923.143 133361.4298 133361.4298 108445.8442 199092.6616 153359.7392 298469.459 294678.2318 536535.3644 152398.6986 305547.6365 193220.6705 114443.7023 779111.2311 198524.8505 248420.152 78174.6024 225152.9673 222804.1617 153358.3305 823042.4492 25028864 xyll Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 16987.6197 4241.4148 2875.5328 8623.1684 16426.8355 5223.898 11082.908 9308.5021 105190.8569 6586.7358 6361.6831 2321.8304 2321.8304 3979.5553 12122.0596 5728.4655 6717.4207 5007.8409 7039.3327 3439.9863 3854.13 7745.7415 4061.6691 25007.6614 8298.5465 12113.3112 4662.9907 43322.8084 8530.4205 3452.7301 8526.9349 365273935 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 29913.2895 21672.0207 24325.0642 25072.4846 25371.1417 7114.5055 27916.5681 37638.5194 11941.9987 24052.8623 31469.3101 22126.3739 457178.2934 29948.4867 42234.2493 28231.5472 16648.8428 16648.8428 19306.0698 49297.6266 32002.1744 25439.5119 37410.8655 42663.7682 16581.9653 15992.9089 33382.1708 17943.0662 65418.0019 12563.4114 38145.2071 16524.4023 34087.4994 20166.9309 20508.5923 40143.9021 354724639 ppx Phosphorus Polyphosphate degradation NA Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 22836.816 4753.6014 26625.4485 68208.5363 8715.5404 5623.1088 7033.8751 17490.4784 20061.3979 129016.1838 62323.6581 10453.935 8642.6132 14509.9255 14509.9255 7797.9878 14993.7947 8105.2228 4265.2383 8063.5524 140839.7465 5545.2017 7033.1459 11244.1515 35899.8978 22856.3975 12445.9502 14772.754 8770.2386 12280.513 8281.5367 4728.3952 7140.3171 146410039 mdld Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 38180.2214 142367.3209 29660.5008 68745.2153 9156.9403 21951.6116 19658.9525 16980.572 22478.9956 29849.8685 26634.0982 1001560.3875 39140.7728 33814.2064 38067.2106 24922.6805 24922.6805 18800.8577 53559.4676 30924.0432 108916.6544 34548.5678 67579.0405 32332.468 19719.5682 39228.5993 27927.8174 94327.9596 30562.5829 53861.7438 17236.5766 21879.9524 23431.3155 16809.9594 41005.5021 296820740 glucoamylase Carbon Cycling Carbon degradation Starch Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4935.3057 77365.7088 34355.3563 24335.7024 4322.3781 3216.4055 2638.7633 5231.4138 7895.0452 2449.4703 187127.8319 7265.5943 7480.4626 6819.1961 3347.1924 3347.1924 3273.0717 11778.2945 8002.2729 11428.3139 4702.8991 12294.2281 6671.9528 10269.2244 3357.8768 4713.1383 9218.2492 3868.5118 6454.8671 3143.2337 3682.5533 9664.3279 357080746 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 109569.271 29492.5401 23050.3087 15548.4536 57609.5416 29798.884 25893.2312 46578.4156 38098.4674 52852.1878 59259.5711 451884.8498 50178.6164 47305.5664 43736.6518 32889.0714 32889.0714 15386.153 192289.5284 40204.7496 88954.4092 101543.4761 21178.605 35586.9618 34035.6173 89329.6704 41771.6742 117988.8114 40012.0939 60031.6218 30618.6598 56661.3295 62956.9831 39761.5877 30880.7921 219729318 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas marginalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 39357.9359 79139.0489 26253.6539 32979.3133 10872.0431 16285.2312 43057.5598 16926.2173 28215.7367 36610.6036 52138.8807 555676.9685 34342.8856 81627.5815 88908.1378 27730.7566 27730.7566 15811.1484 37584.8759 19754.8445 32788.0901 31232.9106 25106.1688 27743.5548 24984.3982 30837.5808 20695.208 119103.0603 48395.9079 48971.0877 27007.8245 29037.8601 24103.607 34215.1128 33503.2234 373103564 bphd Organic Remediation Aromatics Polycyclic aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 9640.5915 10048.8549 2498.7918 4997.439 8985.1297 6405.9167 7799.0548 1752260.5122 5195.1539 10510.2105 6374.1058 2980.7862 2980.7862 3720.5677 17914.8305 12513.1272 7512.3754 20293.8351 8173.0888 8154.4171 4595.2064 5440.2564 12397.0421 5389.5064 8243.1602 4310.5418 15381.5863 5078.3142 4489.4189 9009.6507 209959496 b_lactamase Virulence Antibiotic resistance Degradation Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 1109224.0484 945869.2912 950415.0323 1696427.8912 1297753.0057 811497.6257 557216.0883 693965.7511 820691.5175 617261.4254 667311.2562 355318.9791 13966066.7091 760983.266 763165.6839 1846806.8592 652777.1497 652777.1497 441129.0925 620747.8266 474252.9617 853171.7705 979541.2599 1301411.984 418346.6241 364219.744 685793.7989 285181.8977 989006.3058 556587.7973 744319.6878 396594.0502 337976.2138 366530.8713 371242.8492 1245429.2194 158317215 cellobiase Carbon Cycling Carbon degradation Cellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 29297.6556 16792.5384 21513.5449 18605.4308 24764.7224 16571.0917 29005.9594 38016.7092 34546.2836 42559.3629 15653.3894 683527.6719 55262.5715 51438.3166 27490.8896 18250.6537 18250.6537 23076.3615 57809.4497 21752.3506 43244.4525 43475.0982 37104.5881 37157.3237 14091.0745 34840.3317 21653.3914 76221.1699 30485.1223 44404.139 15707.6087 21930.1846 23378.3706 15999.3505 56346.8118 161167869 aln Organic Remediation Others NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 133730.89 11459.3151 6700.9237 9583.055 4997.5109 10963.4233 29031.2889 23724.949 28887.9576 64547.8768 15068.6977 176694.089 239850.9929 15579.3234 14063.2973 72157.1259 72157.1259 7804.1206 27550.9946 9518.1115 23083.8263 35624.1323 49183.9574 15973.1434 12427.5004 18100.2204 8064.4806 75848.5428 25203.2666 27044.4626 11032.4376 124197.7225 36190.833 15307.7135 13265.6985 214028945 ppx Phosphorus Polyphosphate degradation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7829.2324 9415.9896 3486.7872 4204.3955 5577.2992 16570.8997 12131.884 7174.6319 5024.939 7092.2662 210158475 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 34830.8084 14520.3518 14095.4308 24120.2917 9769.2138 14423.7374 22929.7554 13246.8556 9367.7938 14911.3474 61280.08 332864.4677 15499.3037 22176.3173 45502.5652 22851.9411 22851.9411 11002.2792 22093.8036 18671.7783 23295.3661 18039.1171 18334.8916 14208.0743 10554.1874 19539.3288 10581.3894 161681.7187 22811.1473 33013.5972 7653.2242 21001.5212 16217.3953 9209.4615 35226.5632 337750453 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 290466.6212 38404.1044 122283.2007 147482.1697 113269.9665 14930.4865 174384.4911 144127.3257 126541.9439 261302.7966 231289.0275 160165.5423 4445541.1007 125490.6266 223111.9969 232842.9824 230678.0119 230678.0119 188093.7054 222832.4795 113307.3973 305661.2292 553075.3078 331860.9396 119451.9392 135712.6679 119933.9465 129325.5229 412397.1505 193142.8812 208844.1231 93177.2528 139403.9322 170158.4534 112916.7367 766595.1959 254271863 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 13791.4208 14824.4373 11506.9682 20158.6125 7066.4115 6781.7925 4303.7111 12652.8888 12522.1257 6407.7183 306189.6219 13737.0877 11206.6342 5056.3727 4792.8367 4792.8367 13901.6064 17064.6624 18760.2575 10346.4969 15581.4634 17229.8998 6016.8123 7076.8283 19968.6322 6106.0022 26545.1737 12388.3113 17030.333 7508.9197 9469.4815 9324.6851 7742.5307 20280.612 116198469 cutinase Carbon Cycling Carbon degradation Cutin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 12169.3469 1844.4983 2157.2024 5166.1293 5795.1974 58004.3189 5798.0542 2794.4038 2794.4038 2592.7915 8954.8957 4134.2777 5855.2361 8350.0127 2239.2463 2373.0183 5498.1055 9776.0767 9297.4864 20686.3764 2737.6861 4868.3051 5047.4674 3150.8704 5456.1368 157284130 napa Nitrogen Dissimilatory N reduction NA Sulfurimonas paralvinella superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas; 15683.9821 27696.9747 35000.1895 142060.3148 6544.4496 4468.5412 4605.4231 4605.4231 4922.5167 114511.259 20926.6833 4844.5544 8428.7032 10589.9393 3933.2331 3128.6865 6129.4513 13567.3731 7716.5668 107102.3443 11881.4767 3205.1813 21161.191 2723.4342 10103.5581 226365269 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 23885.2948 6097.5879 20417.741 5812.8942 4285.0833 9631.6549 7632.6351 6924.8163 9564.4697 109173.1401 7039.5215 7404.9974 7436.5899 9446.2523 9446.2523 3574.6775 16998.8087 17925.8316 22441.7844 21197.6141 5797.5929 3877.6272 9917.0162 13450.4296 162409.5917 43230.562 14332.9894 14751.2524 29941.1332 11868.741 38214.9103 9304.6722 323382685 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13137.7162 37453.1463 8249.5572 10493.4771 6528.715 21593.9134 18349.0599 12611.6983 140953.703 7610.7696 14450.3312 11762.1863 26400.7875 26400.7875 3580.4237 50292.6314 13020.5459 9357.2721 6167.698 71185.8504 6701.9911 14338.3586 20284.4033 8567.838 35702.3323 29386.8056 13685.8023 10977.0896 18194.6783 16592.3184 7668.5514 372273135 bphF1 Organic Remediation Aromatics Polycyclic aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 15518.0277 2343284.6745 5890.8677 267112.7 275080.1907 9401.461 13200.93 8276.2075 4615.6655 9524.0362 24108.3905 9548.9876 294348.9901 13330.3428 11193.3099 7162.9736 7522.2944 7522.2944 50035.1109 142844.846 19325.3413 30704.2655 28521.8302 15591.4263 17048.9129 91160.8227 18230.6729 24423.6705 71153.2592 30244.7545 25001.4449 29184.7843 25894.563 22697.7658 9191.0245 19246.2344 116623620 alginase Carbon Cycling Carbon degradation Alginate Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 71929.7629 22342.824 8854.6171 35830.2418 9490.6923 9388.9668 200945.1484 8225.2028 18938.9723 37907.2572 66734.3523 307686.6518 53129.778 77465.8585 60987.2536 24446.1824 24446.1824 22867.1212 723026.3982 37912.8473 63258.2847 55159.1221 48981.1632 23563.6857 21752.8606 26358.3985 26134.1667 62285.7785 63615.6834 45342.3981 14384.0331 22348.91 29843.1264 16313.9152 221483.6774 228015257 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 51095.8507 17435.6783 40925.6859 22835.9655 22254.3889 20126.059 19210.6192 17157.6376 19637.3119 27690.228 33183.709 710386.3292 25369.6335 41598.4715 30392.3343 33327.3673 33327.3673 24780.1555 48302.1514 20866.8566 102235.1304 60006.3713 35592.9297 26444.009 53049.7652 31958.4042 22831.9268 69752.4356 30009.0589 40391.6311 19911.4036 30160.5519 27253.0784 16608.3268 78710.9254 298490904 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 20925.7754 6509.0848 43493.1514 14234.9437 18688.8036 16148.1395 29832286 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 17054.7525 28646.2324 10432.7208 14732.6973 4988.548 40193.1863 25709.2518 10823.3907 31037.4686 20534.428 33423.5895 361547.0021 21798.1583 27087.0972 18208.497 15612.924 15612.924 10758.1456 61496.84 31334.5752 74367.8012 44473.2588 34700.7912 17773.8743 17669.2305 44841.8371 69908.7975 93852.053 67953.2843 39275.5988 11414.3279 26374.1073 32530.9741 32253.8076 54137.5125 393765718 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 31329.6342 4436.1156 11584.3203 69056.2822 18427.1775 14490.6465 13119.717 4371992.3925 12975.877 5258.0389 29399.5838 29399.5838 10402.8003 64542.991 11618.9407 7705.4593 60378.0862 11415.7995 30138.4882 6914.8129 21860.0847 13699.8051 28305.6476 22756.2614 6415.4523 27458.312 8037.7633 26278924 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14005.6844 11629.4692 58873.7632 6620.3531 33736.5879 6881.2754 11306.8736 9451.5686 9110.0621 433552.2661 13038.302 14104.7512 59991.8346 11991.3466 11991.3466 12320.5515 23526.1834 15088.5222 15955.1348 161539.0774 18224.5435 11115.4877 8238.8283 22191.9946 19802.2707 86941.4937 14964.9814 54376.4036 11107.179 8556.8307 21732.453 10009.331 15661.5183 300023139 tktA Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 8548.9973 6086.027 2052.7975 4956.2057 4172.7483 6244.9031 11371.8064 3987.5683 4303.3969 4303.3969 2808.3618 13117.4026 9695.6874 6434.0354 5038.9566 2582.6733 5389.522 12511.1163 6698.3258 9171.4413 6127.449 7629.537 2873.541 6649.7738 5047.949 3838.1452 5106.1513 212711131 terc Metal Homeostasis Tellurium Detoxification Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 62701.1151 10647.2675 37330.0211 558442.3929 81746.1893 19718.3844 34913.1882 255238.0992 26642.4884 41107.0951 40364.4131 22579.1681 31970.152 47025.9727 50014.4812 86732.3326 46231.0415 46231.0415 33633.3574 56848.8544 37818.347 82103.2421 51129.335 59205.8861 20467.0015 34995.9226 42227.3287 25327.5199 85828.9791 37438.1334 51128.2812 40547.6074 30774.6974 42023.2318 28309.7419 67626.4084 312112837 ben_bcla virulence NA NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 37251.8471 19742.9872 20716.1519 34288.3761 40681.9645 11041.7812 24190.2499 22140.2312 14946.5439 28408.0767 26874.1561 20424.1865 758621.1349 35664.1651 30297.8688 28556.5226 19206.652 19206.652 23359.6921 42981.2625 28299.1065 30186.9435 30088.4303 46870.2868 16994.5527 14782.8122 36665.7472 15001.4337 52549.1469 13845.7711 46682.4538 272004.5722 40685.1383 20163.4854 17400.3386 44858.1443 89094208 SoxA Sulfur Sulfur Oxidation NA Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 107993.9017 45489.8636 40400.5585 23450.528 54739.7638 29100.3196 49839.2872 42093.7341 43111.733 97759.9454 38364.9903 108512.4517 98167.4928 454951.5657 51016.93 45953.8895 45953.8895 34225.0513 106201.8579 34654.0615 76871.5698 57047.8423 48367.9964 29345.6664 28176.5456 52275.4725 42301.6283 118106.1961 77824.7461 73522.1785 26804.3869 54445.558 46923.6534 40452.3038 52372.0033 327548809 arylest Organic Remediation Aromatics Other aromatics Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 20194.0976 35323.9357 3783.9127 3149.8337 8526.2917 3594.9452 8310.0263 3510.2423 3510.2423 3320.8513 13593.7891 3019.2634 6346.7736 4465.6617 3229.9931 8955.9274 2468.7949 16677.9021 294631660 merb Metal Homeostasis Mercury Detoxification Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5832.7149 5902.5248 5096.1387 10633.9051 2847.0585 106927.0575 4564.761 3910.8464 13403.0214 10203.5048 10203.5048 2915.781 7689.5283 3876.9879 3011.8082 4360.4219 189040.0259 2265.9769 9172.1445 4764.2149 8066.5603 2699.8638 4301.9791 2121.0276 17511.7961 209401594 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 940501.7924 20745.4968 37994.7553 49096.1738 181384.1496 29647.2823 375014.6282 655024.5088 32728.7769 47307.0638 46966.4774 83730.1531 1524308.461 83884.8232 104622.0298 104798.1093 134720.4447 134720.4447 461017.0586 693146.5792 50039.0562 225526.0048 58461.1358 87213.7455 84471.5163 90598.3363 101182.7981 53760.8448 138165.9502 108399.1438 103803.6154 42227.6143 367753.4789 100923.4245 385928.6849 86763.0089 76577426 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21869.4818 5379.5087 1983.2664 9277.4814 355468506 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12031.1412 7669.173 7324.8152 12788.4712 5529.6277 5010.8658 7678.1522 9449.8288 6092.9822 19561.5919 14465.0173 319936.537 11187.8695 7771.478 15183.8763 13482.0332 13482.0332 5528.0691 18873.6552 9171.9106 14940.1159 10620.1234 13584.4449 7248.0091 6347.8407 12250.844 6238.0362 19368.3645 10307.4524 14583.3351 11190.6113 8420.1984 17264.6994 5488.4176 16627.2686 302441493 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 178055.2331 24801.0553 30435.9958 61638.9295 87151.1372 18841.8252 30310.2038 37591.4277 19732.5412 33446.0869 29354.5436 64558.8245 1699740.9181 39795.6187 79672.1169 64925.603 49240.5848 49240.5848 27686.7851 91942.3712 34474.7614 64815.0545 45635.9442 105568.5828 33894.4391 31855.3329 49455.0215 22405.2841 93166.8971 39920.3715 47536.744 18934.6416 31513.767 52444.1344 127047.8357 43951.7835 251776277 ben_bcla virulence NA NA Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 79604.9789 12774.0051 261590.5286 10228.1005 22309.5397 5319.2325 20006.0058 18459.3195 6052.6633 10348.9241 76174.2597 637572.7154 89227.5603 6020.5245 10603.7583 15442.2112 15442.2112 6185.7677 59677.3293 36389.0325 13224.0873 74804.235 40183.4742 9567.3027 8428.6716 15797.8113 11343.1264 74604.0083 28521.8921 31800.3129 11365.7751 13669.4611 29101.3037 13128.4906 54144.0647 375141867 linb Organic Remediation Pesticides related compound NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 9864.7777 8829.0905 12345.0434 8328.9537 4574.2723 4413.0507 5347.8609 11496.6149 4321.8912 107184.9809 8574.8836 5446.0653 8558.5443 4910.1678 4910.1678 5399.4884 10987.5972 7646.6295 4563.3457 5571.1869 6930.4629 4149.6772 7922.3937 12244.6785 3615.2311 23385.1125 9077.114 11702.021 18362.874 6510.6488 7305.1572 2746.6378 332664167 amyA Carbon Cycling Carbon degradation Starch Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 4674.7967 2372.8334 3727.3346 5293.2307 3183.9112 6652.5573 3684.7267 12455.3402 4430.7734 4164.1978 9313.809 4086.1802 2308.2822 3054.4624 5727.695 119717607 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 14901.8787 14023.0695 9810.8902 7937.2117 17092.4851 8369.7744 4043.2552 19168.945 2281.8481 9023.8988 14326.1536 10170.1272 340456.3141 7799.1381 8505.2374 12281.1103 5231.9842 5231.9842 5255.0044 19239.3497 10512.2153 6645.1162 9924.0939 7987.7091 12410.2312 9219.7374 11192.0646 17131.0421 22025.3632 11218.3962 13379.9632 8733.2333 11007.3576 9653.1774 7618.1152 23561.8529 33596686 ppx Phosphorus Polyphosphate degradation NA Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 19518.2676 226891.321 132630.1075 2974.6613 3013.2411 5667.6736 17332.7569 5051.7857 6104.1308 6382.1515 11470.6628 11898.1343 11898.1343 7129.2908 59664.5389 8423.105 35931.5285 12454.2797 4693.6929 9776.6445 4799.1174 9063.5418 4305.8989 17264.604 11623.8021 15934.6855 4416.1702 11862.2182 21289.002 4877.9359 15597.6451 291340945 ppx Phosphorus Polyphosphate degradation NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 47731.6516 122876.8339 83049.1557 22184.5941 68445.0484 17680.2002 23558.6481 29377.9599 32966.228 16545.5647 54854.896 36417.8905 373364.6666 38758.0012 91484.7693 58411.8613 69535.9159 69535.9159 13815.9088 57307.3672 16216.3192 65124.2473 56807.3047 37704.2093 25278.5642 28550.1539 37711.3796 44137.4599 74170.0398 117028.3528 54761.8039 33347.4144 36895.774 40630.3596 17951.9528 40991.5363 359395507 alkk Organic Remediation Others NA Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 11498.7029 7039.1681 21717.7311 7579.3821 16572.3183 12929.8666 6698.8162 9066.7563 13182.2697 4812.4812 321728.6976 12544.6683 11989.0547 17819.2157 13128.1641 13128.1641 7656.7693 19349.3304 10653.4934 15687.8803 12333.0161 18958.0646 5825.6457 5419.1468 14464.0639 16159.7597 22605.0654 9344.4538 12999.635 5983.4948 8885.7466 9018.9841 6836.2194 17390.7917 119465784 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 18928.5801 141711.3498 7836.2286 97879.9344 2287.3501 7273.2005 12865.7475 8145.013 119522.7842 6472.6849 6131.6031 6195.9654 8388.6179 8388.6179 4767.5912 12538.4581 8468.7843 41029.465 18108.5844 12356.8674 37055.9243 5062.17 52229.7423 75039.1032 21499.0442 60739.2053 9648.832 5130.7858 5789.0013 9193.6251 52785.0189 29048.2166 169821362 badi Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 6445.7545 27943.4198 6539.3686 5735.886 5548.0674 101897.968 124665.7745 6222.8676 7020.4261 6905.0063 5625.1222 5625.1222 6464.117 9180.6247 8714.5005 9588.8178 13703.0517 10098.555 2234.2688 4958.262 12234.0759 5720.3158 14510.9362 10317.3545 17505.7122 7251.6872 4240.6374 11573.2817 3487.3349 9087.2022 227548938 amyA Carbon Cycling Carbon degradation Starch Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 4043.0762 7228.625 2644.3698 4673.2998 3332.0388 3440.3497 6900.9232 4777.9756 6061.4793 3561.4278 4511.4496 7348.6429 4716.8666 1651.8705 3473.7945 3945.1711 110833407 narg Nitrogen Denitrification NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 11886.2491 4829.1738 3658.8929 108704.8876 3526.298 6028.7666 4549.5502 6676.7524 5785.9772 6347.2546 2567.2832 4727.1963 5828.5193 4739.7951 5204.4228 2882.4936 6475.9051 209401818 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4599.7561 8725.4482 5660.4433 3354.7825 80540.0835 4184.6731 16907.7219 3582.1746 3582.1746 7520.5627 4202.0569 10299.2909 206121.4802 2059.5399 11175.4758 2504.9665 11042.2597 2724.1151 3466.8862 3588.8894 5853.9824 9231.163 156857781 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 4600.0766 1777315.9686 410355.5828 3291.8249 113173.6285 4156.7668 3240.4778 3893.0084 3893.0084 7195.0823 4416.6114 4916.4236 5521.0911 2006.6632 2494.3117 4652.5012 18774.23 134298506 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 9311.5283 6640.4713 7403.802 9984.111 4279.4314 3349.1308 6819.7126 11867.522 5597.8059 157356.0972 7659.2709 17914.5798 8967.1552 5497.0156 5497.0156 5356.2806 14080.8936 9982.4734 7299.344 47403.1006 12658.4332 8806.3957 6509.0475 14805.8712 7718.0996 20914.601 6060.3136 21003.945 6657.8354 10574.8644 7963.9846 5429.8084 9973.8989 302655320 p450aro Organic Remediation Aromatics polycyclic aromatics Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 5639.1415 4427.6326 7789.4418 3687.5517 2089.4619 2501.4213 3641.9936 5136.2348 8460.0677 3838.6531 8873.0252 8873.0252 2775.4915 8384.7791 3994.6364 4186.2333 5648.1676 4622.8945 2597.3232 6085.0226 2542.1212 10365.2254 5496.0258 3607.327 2811.9848 5815.7989 389938083 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 8648.5834 3629.9876 2352.0848 3134.6696 4062.7232 52059.9682 8671.6888 85876.3978 9618.8178 7502.2616 5241.7095 4066.7029 4066.7029 17625.4856 11342.9807 9546.0461 5417.393 9701.1648 7208.8532 8870.0188 4533.0896 1019046.7034 6717.9643 20145.6888 3703.7347 7426.6605 3555.8546 8472.1936 7718.6994 9437.5042 8047.9909 2935031 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 155826.1495 21317.0506 20693.4008 55593.9329 22348.6993 21237.7622 58766.4808 10694.3221 17023.3124 21354.5253 34285.5162 325829.4276 24912.079 43586.3117 20378.2275 15134.043 15134.043 15811.3166 24804.593 23342.1848 20395.1191 30942.1156 31726.4607 16177.4347 16832.0059 23956.8756 43323.4195 60641.0763 47434.9932 23950.797 12749.5505 14921.0508 69497.2596 31077.34 39346.7969 302558026 terc Metal Homeostasis Tellurium Detoxification Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 154185.4915 13305.3917 84502.2081 99537.021 38739.0355 14037.6018 29672.9044 35066.3695 22997.8263 99036.5973 71809.0526 80320.929 863683.2041 41610.2411 60843.8597 225160.3683 44353.9377 44353.9377 45442.2187 80993.229 33398.3863 56658.3173 270385.4695 42957.0451 39923.3967 63916.1503 196328.8358 52767.528 204092.6605 77937.1904 95506.4103 45027.6055 44306.938 74155.8125 68151.722 712454.4244 402497661 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodovulum sp. PH10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 11361.4381 15428.2241 7262.7125 4614.4154 3600.5525 4911.5649 4233.1837 8900.8953 9579.6269 4290.5181 13472.6548 6878.6544 4757.3324 4757.3324 10701.0271 4618.7827 4235.7256 6534.7096 34034.2758 3364.1789 6317.3521 15501.2006 7993.0757 20487.2411 8952.8444 7815.927 16589.4157 6398.6675 14815.1567 3569.48 385675605 bphd Organic Remediation Aromatics Polycyclic aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 17690.9731 5848.3997 14240.5116 27783.1385 5178.7866 8280.3035 57333.1056 12574.9008 14067.9385 9943.2156 29090.4001 130354.6359 16398.3503 41594.9726 51193.1341 28873.1034 28873.1034 16738.2581 46688.5298 12380.6081 11205.738 22093.1269 146978.6584 16346.7835 10223.3062 13344.0025 58235.1475 35539.012 10961.6248 20815.1152 7796.1035 20271.7897 22208.6375 17546.0617 12838.4107 94471283 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28210.6737 12229.1546 14798.4372 8372.0883 10407.4347 53067.3739 7083.8019 23485.8983 37032.0308 7586.5255 248839.1336 14158.8401 16411.3736 9585.4614 5869.3709 5869.3709 19405.6943 38248.6362 16448.9403 19700.8884 20714.1164 15477.6762 7745.0888 9446.6337 19374.4093 7831.2339 32290.6269 20718.1868 21617.3552 7359.1636 9094.7764 11143.8762 6702.2186 13577.505 260851901 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 6636.5939 10125.648 25127.5629 333114367 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 26153.4547 7974.2964 16640.1297 18989.8918 11225.8713 6100.4684 19384.2924 23092.2557 8687.2171 18508.6143 8761.4255 188369.9185 12182.4185 11016.757 9636.2253 40065.3196 40065.3196 22691.5315 25911.9919 13281.2759 11574.2388 28765.5384 16374.3273 6311.3923 17119.4164 14166.4512 17162.2804 37547.4753 18783.6068 19735.3659 8764.5204 12609.1943 138806.2743 20702.5521 485819.6731 270511274 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4804.2503 5382.7058 6082.8572 3197.7032 3735.858 10213.4514 18620.4313 5773.5199 5773.5199 7131.9138 22095.3199 8188.5158 51517.6575 175883.9174 7797.5215 12041.9899 28818.6737 7495.7314 5228.1546 34742.7938 13608.8582 7723.6219 13228.8304 5614.8835 10534.0584 17778.4948 67539872 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 10339.6805 7828.6196 16560.6692 2695.8279 5319.0272 7005.3273 5844.9512 7377.5499 84443.255 4412.5415 6542.3991 7276.5911 20807.2984 20807.2984 3227.7849 13725.4068 3279.6879 7348.8481 46592.8472 2437.0059 4942.1121 11286.7833 7458.7839 27715.7216 7717.258 8745.3157 26613.3092 5396.514 8736.0067 3594.1319 256360383 cysJ Sulfur Reduction NA Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 354632.5681 191588.939 27577.1116 57150.6356 96971.9048 83352.6859 69197.0485 31996.2863 65461.6579 134741.9602 157635.5791 2332007.0031 317495.4644 165524.893 224026.2902 105390.5094 105390.5094 57986.2571 112382.338 52398.921 74164.5917 103280.073 91701.2739 51680.7974 55374.8549 71774.8022 106624.4188 266838.6109 77256.8361 105639.9375 48431.0033 59852.2913 65611.5015 76511.1426 57416.7037 126735455 xyla Carbon Cycling Carbon degradation Hemicellulose Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 56788.5539 4188.9289 6688.6623 8596.9064 8534.0773 7432.3679 9409.4999 10428.7735 106154.0493 9965.7781 8627.6236 7682.1746 4205.458 4205.458 9221.4064 21252.6784 12045.2551 11965.4996 11581.4707 6501.8279 6563.807 11465.3161 19046.4372 6370.7196 20479.3739 7872.4101 9833.6713 5585.8257 3388.4351 9291.7943 8513.9597 15846.0064 167698612 amyA Carbon Cycling Carbon degradation Starch Bacteroides stercoris ATCC 43183 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 14560.2945 33978.8336 68285.3162 37196.7014 8486.1467 4964.8258 8146.6962 2643.2692 13478.5032 11057.3196 6383.6245 205023.0792 13447.1857 21114.7548 25727.4769 15194.7291 15194.7291 11202.1353 19898.1835 17372.5232 5866.2045 31868.2984 17613.82 3614.0845 8497.6319 52132.1775 4896.0039 21923.0639 14811.3024 19345.4083 6893.9956 10920.7385 16467.4175 5312.1483 35872.6934 219814339 amyA Carbon Cycling Carbon degradation Starch Pseudomonas extremaustralis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 22634.0327 22940.3284 10760.6571 14535.9401 130203.761 8047.3933 3813.5558 5270.2551 6992.5407 5062.5713 322557.8424 8287.2408 7932.5766 4494.4597 12897.7861 12897.7861 3689.9742 16482.327 11755.0308 4651.7976 7473.8644 18042.0607 5416.5096 4419.1861 15147.2799 31882.939 30402.4051 12653.3441 12916.5468 9786.0903 8304.6444 4616.4574 9625.7428 15702.8876 327313011 cda Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 25760.1196 9553.8689 5271.3888 6396.9657 15015.8614 11196.8869 26198.5333 7927.6134 181357.7596 6459.6403 7301.3308 18568.2053 6132.5566 6132.5566 6831.9353 22557.5967 6516.4068 4208.7157 9082.4402 8236.2045 7746.8984 5333.6153 14782.7162 10154.2781 21584.0705 24944.8586 9923.5433 12191.1392 11187.9907 12075.8182 27984.5309 17121.0696 152999611 tehb Metal Homeostasis Tellurium Detoxification Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 7193.3844 22430.9556 8036.8678 2949.1173 2687.2327 3717.2723 8119.0492 3023.3693 4917.2139 3000.5296 3000.5296 3974.562 26405.3076 9624.786 12403.5669 11213.4207 9584.3811 2691.7833 2920.789 4008.4162 13712.2364 6841.6731 28226.8428 12309.2889 4322.9523 8955.3223 4678.2198 5473.5999 218774926 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9601.4138 4146.4496 3499.5101 4121.8177 4660.7541 1903.2796 1903.2796 3459.5094 5451.0479 4535.9165 8040.5938 4035.2625 3019.0661 8630.124 2400.9216 13815.7394 5768.4991 8555.46 3054.3613 3063.0644 3434.4901 2960.0146 6404.4821 144905457 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21367.311 18709.2716 12540.0587 111460.8991 5171.3163 14641.3789 15171.8671 17669.3594 14497.6942 17621.1147 17294.3318 390773.6911 19638.0857 14625.8547 56521.0958 23334.6855 23334.6855 12566.8194 29709.1679 18267.1509 13831.8724 34408.8891 39082.2407 15938.1777 22854.0718 23701.532 14847.4991 71209.3128 19520.8919 25423.1632 16523.0885 19148.9601 18317.9302 18571.7703 22690.1323 300390249 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 26480.512 7016.9862 6436.6212 10318.6452 8623.6131 3910.1039 7156.5035 4421.3724 86729.6008 6570.7254 5768.5406 4890.6011 2471.3069 2471.3069 40296.8643 14408.684 6115.2127 12900.6531 16678.347 7294.2431 7000.8846 4406.324 8755.1078 4626.2334 16395.6088 5010.6319 8608.4398 84757.3157 4317.3675 47473.6721 18877.7901 65468.2541 7188931 pmoa Carbon Cycling Methane Methane oxidation Methylosinus trichosporium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 127769.7614 13940.9623 42865.8828 28067.7299 27233.6581 16377.7832 41166.1917 108305.5434 40456.0231 59110.5355 98408.9195 61342.1957 1195930.3824 58325.5231 154529.4321 98461.6235 56264.4425 56264.4425 39600.6153 80924.6702 48560.8023 126017.8724 108637.7282 61108.4306 218296.568 40380.6216 88380.843 229829.1052 146720.4608 65757.7799 99302.541 61075.9873 51500.4278 84127.903 43725.6491 80053.902 84704123 linc Organic Remediation Pesticides related compound NA Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 88204.922 22292.1423 66409.2413 20009.0718 16462.4418 11778.773 19449.1946 87644.8064 22693.577 41148.8226 67209.2828 59895.2108 1910763.3531 50796.7205 52536.7327 51140.3972 63743.7037 63743.7037 26825.4393 54095.1045 36203.7835 39102.8717 62728.5133 29672.7966 22283.8765 30089.0676 42970.3664 51859.7319 100584.4355 71097.529 48244.4523 39952.8891 24917.3554 43408.6693 15994.6566 36084.9172 167597500 ppx Phosphorus Polyphosphate degradation NA Francisella philomiragia subsp. philomiragia ATCC 25017 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella philomiragia; 4217.1461 2046.3429 2887.5627 3231.4618 2006.2509 2900.9322 5597.2013 4173.1226 8926.9196 6264.1815 6641.058 2992.7041 2909.2242 2688.5124 139438979 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Collinsella aerofaciens ATCC 25986 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella aerofaciens; 5108.077 84381321 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 26823.0432 8209.0365 26133.7501 11756.7845 10511.0818 8762.6315 13290.3841 24848.6307 11687.8589 22486.7428 18756.1809 350842.1151 17782.6597 29769.2171 33288.5098 30013.3557 30013.3557 12484.8773 34587.7916 11937.4179 45362.3255 39034.0479 14830.4581 20066.5353 10865.8751 17179.0688 11908.4034 25097.7436 34775.9861 23327.8882 8646.4549 89971.9319 13399.7023 31935.696 6813.8306 20278795 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8612.1009 5234.1489 6849.8312 13831.9809 7849.7558 6048.0277 2343.2349 6689.0773 75008.2355 4514.2281 169743.5305 10604.5522 8760.1929 9376.7347 4994.579 4994.579 17553.028 13747.25 7649.3987 8598.3872 11508.5509 9027.2187 3997.0901 5976.4633 11336.2225 13468.0127 100911.5115 12940.4806 16188.7687 7499.7165 6759.7908 6474.1498 4435.3823 12368.9367 306517189 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11164.0965 13293.3572 12583.5567 25540.1646 12655.1345 12573.836 7974.8447 6495.2939 16726.4788 19443.8146 154531.765 17071.9059 43462.5178 21978.9299 7208.2286 7208.2286 5990.7297 24862.655 26905.9916 11749.5256 19813.7112 19621.2176 301288.8114 14552.6789 19486.7266 28577.6406 54011.6083 18547.5118 18006.4128 9741.5652 15550.1965 12402.9493 8315.0441 16138.6486 170121561 nirb Nitrogen Assimilatory N reduction NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 14096.5298 14392.9138 11590.9282 9899.2673 7255.8338 9402.8072 14024.2628 6444.5174 211644.8039 12095.8097 10633.8764 6043.6393 7486.4364 7486.4364 13921.8817 17329.4734 14001.2587 13545.9515 14714.9156 21551.9266 8080.65 7538.407 15751.9459 10408.1754 28118.5657 12590.2106 22751.2732 8323.5105 159887.1765 9441.9474 7586.9441 16444.332 344038773 alginase Carbon Cycling Carbon degradation Alginate Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 6654.6622 25735.5293 7136.5117 4418.3003 4173.5801 2564.9236 3551.9991 6759.5933 4509.8705 195490.8958 6848.0647 5896.0093 5557.9587 5094.735 5094.735 4035.442 12934.4148 5887.57 78566.9049 9671.5668 38031.838 6318.289 7270.649 11704.1749 3288.1361 12157.6758 10619.2205 12074.3945 3293.8532 3732.1006 8300.3777 3804.9197 6418.6226 328951524 merb Metal Homeostasis Mercury Detoxification Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 7153.3626 12865.4321 5552.8462 34939.4905 7476.1183 4056.8774 12469.3754 7804.8429 83573.4744 4423.8133 32871.3636 19568.9964 4951.6018 4951.6018 7896.1618 9893.0219 3016.6575 4063.8263 8696.0519 11029.0628 53283.5749 17849.2383 7658.1619 3928.7604 6346.1985 4426.764 88771707 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 4305.7589 8611.4214 8584.2681 3145.6723 2300.4032 3555.1008 4281.7668 3760.4811 2028.5533 2028.5533 3638.183 2957.4976 7942.4829 4838.8992 4767.3546 4242.3659 4653.171 364505647 hzsa Nitrogen Anammox NA Candidatus Brocadia fulgida superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Brocadia; 19513.82165 16672.4191 12062.7453 38232.5788 39398.9052 14372.3066 13520.36035 6088.82125 17333.5387 14358.5044 8284.1332 8284.1332 21919.3973 14940.71255 14746.79485 17561.7195 7285.2666 8501.71805 7474.12355 26775.26645 8388.346 11621.33245 10028.2203 7806.05515 239831577 ppx Phosphorus Polyphosphate degradation NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 823068.7177 11714.0892 13914.1039 21432.5704 15718.186 8011.7178 16908.0614 23572.1135 44872.2924 111451.9487 31913.0989 52087.9827 325820.4089 20427.1575 22435.9344 25386.899 17708.457 17708.457 18757.0425 38785.9276 21533.8945 35623.9147 32188.7454 23548.7904 13753.1358 17387.9007 26241.9004 25605.5848 74135.3838 33105.8172 31037.6982 14485.6642 16684.3525 257673.509 12101.1679 29051.8616 343087358 heparinase Carbon Cycling Carbon degradation Heparin Cyclobacterium marinum DSM 745 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cyclobacterium;species:Cyclobacterium marinum; 4863.9738 8778.136 7677.4645 3809.4127 6456.2876 3480.716 3442.0744 2974.1856 7178.9481 3607.967 9663.9923 16094.603 2990.6703 7905.9136 29529.8681 1900.9915 3409.8788 3269.5641 260222345 xylc Organic Remediation Aromatics BTEX and related aromatics Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 84045.4287 19252.8447 72765.6615 102747.3237 59971.4221 30571.6028 50879.3203 96122.4974 395986.7907 93380.9801 72747.6733 73363.5206 16134539.2348 74291.1067 102575.495 98594.3799 97504.4599 97504.4599 52227.5497 104071.0573 77977.9876 131046.4762 144782.1311 96208.7981 58331.9275 115108.7109 58147.5008 52936.4348 234758.6011 249890.0308 136778.7796 61118.5598 96905.6452 83641.7747 40738.5906 84323.2099 359837964 ara Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 6755.743 4683.4845 6202.0559 7367.6426 2500.2968 4364.9389 2791.5339 4371.7685 7724.8117 2868.3422 162677.7049 6254.1834 4697.9435 7010.3636 2950.9603 2950.9603 5703.2192 13043.2536 8528.0987 7174.9527 356676.114 8639.2688 5690.4454 4325.0516 13865.1882 2997.0696 20543.6712 8938.278 10770.0991 3343.0286 6299.4732 5946.2551 4889.5403 10204.1283 359452495 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4311.8827 2899.8851 2323.3276 3479.9591 4164.938 83410.6169 6168.8856 2587.7835 2587.7835 3609.7927 7101.8957 4889.004 10842.6441 29115.3275 9050.5361 4099.7829 4067.8974 6200.6943 8972.3455 16319.7771 6353.7411 7426.9556 4348.5083 2935.9156 4073.0449 3950.0338 7160.2323 290878902 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 12027.887 15185.1098 3303.5679 4428.9583 5606.7764 5149.957 6340.1254 10151.6806 10151.6806 5138.3081 15334.8675 5444.5396 3853.2022 10928.4312 27849.9977 3751.7311 2674.878 9161.3455 9490.7507 9570.5586 8908.6955 4592.1369 5599.3979 5221.2027 7301.4263 12278.8563 390413036 amyA Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 31188.5976 6668.0411 7069.6864 4035.3147 3534.1071 5130.0498 2296.3909 4485.9551 9610.9602 3832.2153 173205.26 6338.5981 7933.925 5192.426 3189.1771 3189.1771 5391.3378 9244.4911 7140.8346 12791.9257 13396.3915 8923.8736 7621.7256 4480.8733 8405.9342 3939.5161 11723.1157 7609.2721 9879.1548 3867.0493 3800.333 4284.2852 2655.0958 6859.5727 402259105 badh Organic Remediation Aromatics Other aromatics Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5512.1564 5601.7654 12557.3244 2799.1626 2540.5083 4460.8861 5844.8377 3257.8654 77445.1486 5742.1475 23752.2307 2316.9647 2316.9647 10454.8176 5376.1071 4295.5882 5347.5979 5899.9384 3435.9348 2787.3752 7996.4327 3276.6236 15837.6191 4970.0831 14830.6795 3036.0864 4517.1252 30719.4899 2727.6248 21048.3551 317048076 xylj Organic Remediation Aromatics BTEX and related aromatics Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 71540.0128 47375.2722 46660.511 39084.4291 10475.9277 112384.3265 79815.0317 50912.1831 77888.9367 72099.74 36949.118 1076982.2652 85993.3308 129138.1598 52817.2936 47320.689 47320.689 85978.3579 60914.6117 50782.8307 66739.6205 125727.6892 84431.0412 33172.9654 40886.8 55821.4709 62638.1153 129232.382 51994.2658 65393.7147 34271.4423 41917.3763 44657.6768 45419.2483 62924.2056 115525110 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 19266.5535 5825.4599 8365.2504 104611.4224 6963.5792 14952.0239 29205.1658 14849.1013 63561.5917 26954.8545 23517.0321 4650971.2434 13228.8886 24873.3212 45185.8177 16449.303 16449.303 88768.0698 75482.6736 16148.3868 17080.91 42039.8681 23522.1728 12630.0048 23387.5603 17847.0754 12252.671 57916.6663 34148.6144 37611.4066 10148.5662 35204.2485 35771.8196 20414.5163 22125.9315 381361553 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10265.0231 20273.3618 23990.825 25188.7674 25206.35 5808.9068 17129.158 44928.992 19903.1893 464195.4872 18727.115 42142.2257 4591.3005 7458.2054 7458.2054 6330.9371 18951.8296 8780.6095 8644.1369 9514.9907 12411.8189 7309.6141 6797.8638 15142.7333 14106.1505 22345.9859 12787.9285 9246.2613 8870.4785 25404.6441 11257.0172 11269.2267 67762.6646 354956177 SoxC Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 288993.8676 10579.8769 459421.0977 8670.8394 9908.3795 263431.1933 16434.3261 77790.5257 12236.6748 34262.2006 16209.7027 638005.7592 29250.9636 41257.7569 117327.9748 8133.2053 8133.2053 6462.2782 30769.2581 13404.0414 89096.3232 20303.7805 23938.6816 8947.7453 9851.2883 14070.4044 25557.7062 32009.533 25716.6493 19252.8287 26307.3096 15743.3607 18161.3345 15048.9133 9328.3414 334135030 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 40328.7347 6621.5368 10370.3029 9319.247 16289.8653 6748.5896 9592.2836 15645.562 39532.9989 25768.8812 14637.9247 277070.841 30070.6047 18158.5434 17890.7994 153630.2299 153630.2299 69701.2391 20456.7649 12698.77 37129.0947 27330.6619 9161.5993 257745.4394 28489.5865 19732.725 14895.0149 29519.3913 10300.8594 65851.9398 236217.6742 15133.0047 20185.1838 18743.5555 22136.5439 359767559 arsc Metal Homeostasis Arsenic Detoxification Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 13826.1557 48519.9481 19123.0623 4778.2198 8741.6643 24243.7415 12358.1241 19718.6461 119938.3852 121370.9948 20821.0464 21054.0865 18917.884 18917.884 7835.4726 51698.853 9746.6457 19649.8772 24960.7482 10926.4185 5213.3501 10511.8935 13165.6429 9944.8852 45973.308 18731.149 15360.0186 7565.1856 33841.2471 17456.3611 6144.6305 217229.5323 151302253 APS_AprB Sulfur adenylylsulfate reductase NA Desulfococcus sp. DSM 8541 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 18207.2316 5534.7462 20490.243 11180.1725 2351.4207 7101.2352 2242.4226 12755.6885 7848.7954 5970.9903 356167.699 9532.8742 16793.0985 15751.2743 6080.7344 6080.7344 4864.9136 8296.1857 9585.3896 4667.0805 6948.3291 4108.9865 9487.5976 13315.1519 3889.3664 15635.0752 10973.4174 11110.9591 6031.4063 7342.8151 7191.2484 3463.4759 15151.4179 163779081 hsp90_Choanoflagellida Other Phylogenetic NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 3923.7218 9484.2684 1901.584 3298.8002 145613.2992 3762.1318 5214.6619 2635.2024 6545.6031 4254.4154 4478.8983 6085.9792 2413.3346 7079.0985 3477.1309 2223.4339 2735.7696 2762.1005 4983.1664 238490254 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 10151.2193 8907.505 10067.119 7628.2982 5735.0046 4787.8526 3227.8728 6252.5424 8303.2108 4717.8919 113601.8439 9405.5379 7348.0458 5918.6152 5091.4596 5091.4596 5212.9669 15593.9525 13777.9205 16571.8457 17120.1178 8053.18 9641.8224 5178.6657 11384.5406 3210.7196 16217.1381 6273.7029 14075.6832 4974.779 5727.7613 7379.1066 4754.9794 9993.4648 328545246 mer Metal Homeostasis Mercury Detoxification Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 51462.7251 56249.9294 34673.0072 149826.1775 11767.8689 31534.0844 36161.7367 16404.0162 36726.0274 81806.9174 34425.8985 798523.4995 166649.1862 57143.7488 82312.8467 53163.0597 53163.0597 36791.1964 67981.4664 41549.9242 30895.8341 89813.3056 81678.2119 57472.3158 31979.4361 84343.9185 47817.5129 97208.2556 68902.9989 127203.6175 195100.1901 47568.5993 47451.0151 74937.4461 65687.9968 262200918 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 3923.4085 5692.7133 6211.1227 2303.6301 129116.6084 2758.1392 2758.1392 11762.4942 4420.0615 4559.29 30626.6698 2293.502 3856.7713 21845.4527 6667.2197 11717.111 2913.6514 3210.9338 48600.1345 326385161 arsc Metal Homeostasis Arsenic Detoxification Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 4378.4149 10780.1173 5933.4617 43610.7467 4877.5873 3432.0267 47088.3564 12640.2989 15122.5117 126555.4438 9919.6917 12939.1481 5255.5938 10912.4954 10912.4954 10137.9204 12751.9852 8981.1465 21614.9898 8492.4069 19199.4841 5364.5895 21954.7056 9771.6513 7066.554 21735.2008 17647.8895 11610.0746 5924.4647 7605.5622 6535.5375 9384.4735 8178.4652 341925988 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 3522.0307 8235.4776 2906.001 4734.6745 9548.1654 7112.083 2149.8742 81860.4089 5948.3189 16037.4669 5248.6164 3446.4361 3446.4361 3869.5625 9648.0812 6869.6308 4999.7435 5148.2003 8564.8853 3643.7858 9593.7397 8732.8595 2741.6625 11044.3372 9706.9004 17815.87 2953.6223 3762.8162 11411.2153 2734.9614 8149.4049 388436018 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 39072.6229 27959.3778 9105.483 5784.0055 76676.1683 69680.072 32796.5372 10418.3443 33516.9011 5981022.2639 12063.7923 14433.1393 29699.8606 75205.4522 75205.4522 7828.9512 24582.0839 31175.3007 45804.9153 32646.0816 84797.1434 118909.889 15149.0745 34983.4559 19399.1214 19054.841 59889.0225 27684.51 8726.5723 36706.7888 88770.4531 27456.4878 8635.95 209401692 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13766.5387 9070.2843 5237.0713 7755.3878 12047.6888 6576.7333 25418.7544 30987.0776 154275.6388 16638.2468 24132.0264 7576.4695 14295.6004 14295.6004 41292.748 18648.5454 25826.8934 41351.8617 11557.206 14015.0617 72552.4608 6479.2394 10060.9244 68084.4517 36337.8337 11290.4314 16496.3266 13580.4804 11105.6992 11317.1632 7206.3542 185641.5245 343804628 rubisco Carbon Cycling Carbon fixation Calvin cycle Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 10322.2019 288913747 arsc Metal Homeostasis Arsenic Detoxification Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 25918.5084 57703.0431 4113.4825 1741.8064 4387.0138 2868.4638 8900.9057 6153.8971 103016.9171 58769.1556 10329.2142 6775.6547 9367.8997 9367.8997 6509.1456 15835.0392 8059.0912 9113.2043 9069.9016 13827.481 5586.0996 20157.8833 11102.8454 3956.0332 23541.7932 61882.1585 8888.1325 3911.7817 16374.0991 12077.7033 3645.0978 9503.2792 296129129 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 9004.8891 10824.0722 2695.4807 2687.2781 6019.7037 5367.0298 386220.1039 5904.5365 4324.5029 3144.5099 6666.6984 5260.5251 7749.3131 5510.8376 2501.4765 5938.2787 2619.9569 5392.0896 6377.1865 7476.9056 3301.0181 3687.0213 2741.3544 5517.2361 403508169 sdsa Organic Remediation Others NA Nocardiopsis alba ATCC BAA-2165 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis alba; 546825.3435 8145.2551 10796.1392 35940.7719 12078.7011 4535.6783 26204.4644 9977.6773 27485.1564 10557.1673 39074.832 149010.9857 9880.4642 28767.2158 74987.3743 52926.759 52926.759 11152.1507 39092.8205 29709.0915 23087.0382 56418.7007 14601.3035 15292.487 64165.0983 22457.8178 14299.9977 36548.473 54621.4426 66730.2556 5265.3379 24290.5638 59916.1346 9890.9628 37690.6137 301109693 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 37377.2295 26482.626 18974.6362 26900.7056 14177.3318 7892.7317 13803.0587 10843.05735 18812.5322 24228.3645 40000.8825 75827.2968 20516.9334 36652.4242 28742.7716 9111.1316 6755.99325 40423.74315 113529104 bphc Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 43563.7736 18560.8547 26114.9759 15282.1409 7670.1715 17194.2475 11609.1281 15865.7588 32111.4834 20284.7743 219048.1234 16845.776 15797.5285 15513.7601 8826.2594 8826.2594 13636.2004 30482.7726 16766.2338 41580.6045 26075.9465 15907.0977 16535.1704 8947.2436 25697.0032 16107.0461 73069.2118 15286.8868 36349.4432 15164.6189 22211.3147 21849.115 8990.1515 40007.4592 374995818 dsrB Sulfur sulfite reduction NA Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 47517.2526 11824.0879 39501.0418 46937.6712 34004.1956 11019.6411 65430.8817 55286.7209 161196.1608 49415.2313 38465.6995 977958.2275 45791.1301 102493.2137 56720.576 56889.4054 56889.4054 38036.7451 79181.0276 51431.8185 92384.8937 214669.161 49522.4512 41358.6185 42801.3704 61418.0643 54886.6933 320566.9611 53811.726 60763.2266 31869.2227 40303.0008 50869.5879 58453.9763 49619.6765 115401940 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 117436.0579 445985.5927 13274.8315 1846393.5874 70081.4168 57033.6482 2745.3709 4730.7469 9974.0988 91046.0453 3197193.3542 4751.5148 4110.612 6343.8175 9170.436 9170.436 13693.2365 16519.5695 51793.5924 7842.6759 6059.7302 3549.2488 6495.6853 9678.0329 45828.7685 10553.1352 25182.7687 2479.5488 17566.1719 268103.9894 3651.4109 9347.1343 295689836 phytase Phosphorus Phytic acid hydrolysis NA Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 44618.4808 12088.4569 17164.9044 36652.8489 8031.7729 15267.1754 45528.7268 11939.4186 30612.7656 15607.6606 18015.8534 339751.6643 23612.4918 17846.9563 60939.0435 88725.1401 88725.1401 10718.1701 31676.6385 21845.7883 37058.5789 15767.0269 17776.6663 23583.5282 20435.3991 36119.6522 154134.9445 49424.8293 30861.6829 29808.1239 14187.0003 34172.2103 17208.6577 8916.5652 44854.6071 336320621 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 454352.3343 115601.7689 72749.9366 37393.4441 99530.3671 39453.8891 87519.8501 107877.6567 97494.4989 46975.2743 84151.2646 112961.6932 8648919.4232 301231.0736 138616.5216 146537.3897 83254.8588 83254.8588 50281.318 279743.237 97018.102 126390.4878 202446.2036 115839.1042 62249.3564 115083.2117 117494.7118 110880.0178 284902.8355 188281.6083 121615.8272 70178.5038 105020.9897 173870.565 146135.0249 454215.0187 255106942 PRI Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 6742.5654 4629.4288 16024.1963 9091.5662 35230.5068 15352.4314 27052.7928 4737.3289 3701.8712 105886.4303 9658.1843 35498.1652 6015.0898 6538.5008 6538.5008 3630.6679 6938.1946 6377.0746 5717.9123 4235.556 7769.3031 3766.5888 5374.7667 11339.1554 2627.1944 22025.2814 10735.9233 12136.6304 9342.6762 25523.2948 27150.0484 35198.1823 23429032 b_lactamase Virulence Antibiotic resistance Degradation Aeromonas schubertii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7973.9207 27552.4505 2504.1345 2684.8191 2629.5332 16790.9364 9535.2597 5206.8992 137003.8374 7578.8733 4939.0809 17541.7458 3662.9245 3662.9245 5203.6042 9647.6028 5190.3546 4934.6678 11766.3136 6580.7587 4715.0895 4815.8615 6415.7402 4185.4552 13612.8394 7202.7972 7555.3728 2714.8739 4865.7648 7258.6684 3210.5747 6399.8342 119538763 terc Metal Homeostasis Tellurium Detoxification Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8826.0545 32987.1039 22349.9135 24380.0333 3799.6632 3251.7398 10432.6228 40887.3425 110868.8807 5277.7591 3846.486 3846.486 2690.8215 7464.1249 3829.9342 5059.28 2638.3442 6122.8327 17303.1451 6880.3615 7201.1377 4278.8614 3972.2909 3340.2559 334142523 xylg Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5069.7196 4042.755 16567.1021 3517.4014 4493.3135 11914.347 8638.1534 161058.4219 10208.4409 5574.6403 13960.644 3079.3846 3079.3846 7820.2904 4106.6171 11485.5156 3704.0975 3386.1534 6509.2281 18345.4093 7206.6831 7802.5885 2628.5522 2820.3753 3394.533 2884.1421 206676743 dsrB Sulfur sulfite reduction NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9972.2087 21022.921 12038.4061 46921.2407 14770.5004 5913.178 3690.0842 13480.4896 17782.5504 18463.1567 1248437.5942 13748.3495 54845.3548 19469.3811 12557.4834 12557.4834 10202.8233 32667.6648 20712.5046 7393.1681 32935.9663 12900.5076 6865.3312 12123.0721 40633.7402 16370.0234 45146.2418 51462.1507 58350.0923 22248.7036 20209.1415 17213.9761 6123.9407 384522097 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 9521.028 11748.0857 6201.7203 8406.3961 12723.6723 6805.9492 7267.5504 4981.4698 4914.7121 11795.4091 10631.3969 5603.9618 179932.9511 9944.2834 8928.896 4875.1196 8441.2221 8441.2221 5640.1324 18678.3133 13594.0903 8165.3234 9853.2446 10345.8504 5102.9206 58618.2462 14524.3365 7967.4708 20382.0433 13134.4418 12691.6898 3886.3316 7565.6078 8821.7099 6371.7426 15222.9693 167072912 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 35339.1388 97033.9433 12145.565 60881.5411 91817.6636 2289.5527 31376.9145 4719.6301 9866.6474 75532.9106 9941.628 353081.926 14351.5394 52235.2349 49830.2881 23192.6124 23192.6124 70101.9725 20478.4651 17308.8666 19500.7466 11108.6272 8539.4176 4024.199 12948.3433 33749.04 8996.6572 42985.6631 25737.675 23761.9749 11289.2725 13997.2543 16864.3058 4783.3124 14300.0866 39843363 b_lactamase Virulence Antibiotic resistance Degradation Pandoraea pnomenusa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 11665.1372 41506.2555 5188.0697 2958.1514 2747.6714 8563.6737 8718.8787 302894141 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7196.1342 5270.262 6332.9065 12379.486 2890.1929 5924.0934 2541.8358 6353.3449 5193.12065 2972.6298 133600.4834 8323.2796 19227.8928 3191.5207 3191.5207 6302.7826 8140.18315 6629.29665 5294.8538 8806.7046 9210.4213 4109.1293 3649.6721 8721.33575 3004.6294 12022.815 6755.5667 11958.2835 6150.1445 3741.2866 4118.4464 3202.59765 294973386 cellobiase Carbon Cycling Carbon degradation Cellulose Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 4633.9954 17210.49 4391.7879 6579.589 160864687 pula Carbon Cycling Carbon degradation Starch Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 12699.0354 5130.6446 19351.842 4849.0875 5702.1837 13553.5729 4369.3396 3943.6125 4436.3478 68804.7813 4193.6636 10857.7735 11793.1345 5048.7294 5048.7294 3193.4847 11858.7826 6887.7215 7688.9959 12280.4761 4521.5186 185336.7771 3941.1279 7970.2148 7611.0148 11428.6136 26852.4613 8593.3949 9187.5063 5246.3632 19066.3319 20397.093 8589.4212 342824468 terc Metal Homeostasis Tellurium Detoxification Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 4222.4177 7528.7562 4378.73 3696.3682 7006.2664 5244.327 209956925 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 50607.6997 11316.8042 14550.5623 31332.776 15446.579 31894.3789 53007.4801 19525.9558 26492.7806 43019.4757 50166.2999 331761.397 56616.7343 55067.1729 47160.6814 35369.8201 35369.8201 27451.0839 113631.1273 32172.5163 22691.2156 75846.4706 29852.2003 29180.9145 12045.3329 42332.5827 39571.0237 59789.4393 77815.4497 39227.253 17015.965 47650.6832 131858.2184 27273.0969 48084.5385 226304230 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 35122.4843 35899.7795 11229.1089 14862.8308 4951.7188 221804.251 139322.4936 20697.6065 42506.2964 35595.592 31713.0193 261900.7337 37546.2669 29636.2346 41322.7392 165549.5438 165549.5438 34152.7614 53796.6823 32615.9327 29034.9025 81940.1539 31207.9262 38031.5491 16810.8499 30694.0971 42972.3488 34657.534 15798.1798 67240.6429 19123.6139 29388.8925 35306.143 13391.9251 60018.3779 299754434 p450aro Organic Remediation Aromatics polycyclic aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 6793.6957 10511.2034 11726.3562 29764.88 11000.7817 3755.0821 12896.0417 8574.8547 4259.9975 12777.6619 11316.4668 121378.6262 9330.9071 62943.0489 10490.3411 7956.154 7956.154 10022.9627 16255.7688 12568.3758 28919.108 11658.7864 8765.9917 20218.9711 8554.0577 13567.2386 16239.1503 22731.1247 16056.2247 15319.9998 97558.4888 198236.1595 8608.814 8330.1432 6285.1677 260597251 nfsa_2 Organic Remediation Aromatics Nitoaromatics Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 8170.2703 3064.9796 2419.3386 2325.8846 2957.9211 4014.0733 222341.9875 6696.1185 2082.0205 2082.0205 7683.6629 7444.3393 3705.5825 4336.4628 4386.1765 10851.1466 2451.2279 3703.9496 5877.2248 12455.769 19650.7183 5829.9363 4978.6604 3693.9124 3925.6173 4046.7732 2663.2365 4577.2831 260089370 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 84692.4074 11327.3126 206633.0972 35307.1079 63535.3976 21059.5969 13688.5732 297421.9404 13380.2682 49064.8992 47042.8547 32676.4111 4434744.4837 47941.461 43063.8373 69582.0153 167838.229 167838.229 38488.8763 60238.9101 78198.9043 222225.9474 107458.7609 83809.1352 38531.4265 53865.421 74032.7402 47000.6892 81471.8077 57654.1045 129595.9569 23713.5528 26379.5886 49146.3605 43955.3897 65201.454 110819516 catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 32338.6941 13844.0581 15996.9358 12178.2398 5486.1094 7979.7226 12110.9383 10550.7144 38786.9998 31472.8904 19265.6044 260892.9197 48947.5794 80364.8382 89377.6956 20558.0833 20558.0833 15507.96 58189.0104 22252.0481 31586.116 60056.6149 14821.5398 18820.9839 19118.7308 36094.6991 33050.1449 59454.7102 33688.9756 29165.2865 10940.0008 27807.4626 38457.1526 13151.3333 116279.5813 222138072 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10582.112 81136.9868 12515.3064 7194.3553 2366.5139 15362.5491 3671.6868 3470.067 46680.2398 3389.1953 133137.5869 11101.3168 9860.1459 7901.2325 21278.6287 21278.6287 5306.2776 11316.079 11380.4178 12917.1944 9512.3623 10678.328 3675.003 4513.7449 12506.3304 7262.9819 17400.3879 12388.1354 11870.7883 5159.8742 4382.2284 6745.2831 4931.7866 2144598.7536 209869148 dsra Sulfur sulfite reduction NA uncultured marine bacterium superkingdom:Bacteria; 341604.009 85431.9344 369991.165 211678.7508 210497.1597 121521.0752 229172.6562 264413.5509 441782.1638 164780.044 161295.8337 148594.6259 4933190.4161 236206.1372 495400.3745 429414.2039 395160.7529 395160.7529 145391.7209 250822.3888 152726.3817 838715.229 359979.6546 427855.2437 193946.9938 138762.0943 211980.6699 125020.8363 437388.4989 318091.4445 211642.7579 116631.9295 142283.7633 153080.5895 101537.7932 2280320.5195 397165551 tehb Metal Homeostasis Tellurium Detoxification Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 4697.2228 6431.7291 7639.6988 7376.3758 4943.9665 97670.0304 5587.8113 5618.0577 9057.1018 4000.1121 95139.2736 6581.7035 13785.4541 5688.3201 4272.9702 4272.9702 5007.7312 9318.6866 12664.3251 8193.1579 7273.6613 7576.0094 3150.1792 9184.7738 9361.0102 112644.5547 118823.7881 7105.7873 8187.4321 25872.4572 7131.6228 5884.4947 3108.8452 7281.4202 299800818 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 60808.412 12239.9178 7326.9789 11937.1845 14767.4603 24763.26 5947.0738 19042.9969 7004.0682 10320.1718 19572.9762 29359.9096 474128.8375 17448.3501 214923.308 152802.3252 22358.932 22358.932 80799.4992 18400.4766 10444.1015 21798.155 17678.6918 17727.0724 9256.3992 19553.3047 27695.5903 97296.307 98215.7818 17653.6883 29416.8518 8999.7078 28911.941 18944.7226 17543.3969 48464.6067 222451844 arsc Metal Homeostasis Arsenic Detoxification Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 48253.9474 42368.4748 18582.4095 32381.9488 5702.9746 29219.1193 22314.9374 12564.144 18612.8041 28015.8915 32583.7611 329508.9933 17749.6581 18771.8562 90176.1888 16855.6957 16855.6957 76048.5292 63721.4073 20218.5345 33167.8306 114475.3277 18768.5967 19251.2798 27170.8832 21745.9572 45784.3668 50141.0435 16437.7253 28448.8621 22265.366 60791.2883 35292.7422 15627.7872 27124.1727 383338218 terc Metal Homeostasis Tellurium Detoxification Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 11466.4741 10682.9541 8316.3454 10146.3583 3519.9547 11306.8568 9337.3423 15534.1147 3733.7394 655334.82 8790.0432 11666.1334 12460.1996 7593.3612 7593.3612 7522.6308 18692.5818 12351.9512 13963.7481 17764.6741 13723.9871 5972.7147 7504.0115 18247.4957 8462.8897 28009.5374 14952.8285 19677.7063 7448.2159 11074.8434 11820.0572 8539.9353 25026.7019 328845501 ppx Phosphorus Polyphosphate degradation NA Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 7284.9404 19056.3172 161138.6046 5655.8107 7911.1184 9049.1673 59483.9205 7657.9335 5505.7018 5457.6529 5085.3271 5085.3271 14666.7483 8931.2625 5838.1015 8375.3772 4440.2326 3697.2831 9382.3212 10849.9761 5884.0425 9016.8117 3322.1173 4217.6092 3280.987 6694.6144 302846911 mg_chelatase Secondary metabolism Pigments Chlorophyll Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 6542.1351 5328.9852 2423.3114 4633.3039 4782.5942 3033.3369 81063.3076 4019.2314 3682.6958 2308.0363 2308.0363 3190.0289 9024.3689 6177.2929 4100.8854 6754.553 6983.903 2257.4224 2928.4122 5656.1605 2600.7984 17205.549 5958.0996 8378.1329 3149.2446 3804.6921 7326.6427 3686.5778 9623.8807 332013235 pcag Organic Remediation Aromatics Other aromatics Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 29915.5686 17554.5902 31053.4906 26756.4032 117642.7037 17933.3111 17923.5815 35485.6991 38863.82 29956.2157 46964.6264 31219.1229 765717.1045 43721.6076 34580.2641 35679.0181 21706.2616 21706.2616 21758.3925 42730.0594 29215.4062 53945.9728 40550.0622 46764.9792 17218.9607 25216.8103 36342.1385 17272.1123 60862.5035 35288.3413 39510.7142 24882.996 23908.1141 26439.4184 14208.5537 46162.1412 124261284 xylj Organic Remediation Aromatics BTEX and related aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 28899.3073 7753.4393 10580.2808 12746.1785 11829.0699 51399.7186 5447.0006 17152.5733 33368.9033 564346.3591 14709.7937 11526.8172 8746.5775 22514.5501 22514.5501 10822.8516 16324.2082 9268.7012 18371.418 40839.1097 7682.8341 10446.1111 32862.6191 21320.9136 17508.2352 41400.4127 40744.4742 26367.8659 16163.5999 14168.9316 18726.9681 77237.9505 56865.3567 21217709 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4303.0808 22496.038 9218.5579 9218.5579 8879.9157 6597.4919 9430.9879 372272129 bphF1 Organic Remediation Aromatics Polycyclic aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 4165.3383 466150.5066 8778.5964 36980.6604 36821.6251 110759.7773 4214.1336 3652.4835 2222.3049 2222.3049 2836.1112 7519.5774 7993.9038 16576.2182 6869.7212 7412.7084 2687.3695 3849.0448 6092.6141 4153.6297 62115.2492 4444.9135 21537.2252 4030.5863 7903.8589 4666.7186 4936.8613 329746444 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 63338.4125 4923.119 5233.6459 7832.9126 19412.0048 172578.1416 17047.8729 7449.7854 124381.1372 6357.4746 6552.6757 48669.6292 6200.4859 6200.4859 16434.41 8434.322 5834.9414 37519.0705 2526.3267 10610.5195 9941.63 3222.292 22310.1737 9730.5816 7504.068 3396.4271 7072.5041 16706.4235 2906.5538 38110.0825 359415281 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. DL-VIII superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 16903.4093 4737.1227 11274.7679 5035.7135 2752.0212 4495.1983 5503.3822 2463.3404 91907.8976 11124.5105 6476.1197 4878.6746 3422.3215 3422.3215 5469.0756 5976.8868 6054.5031 8109.2861 6472.7281 4836.2662 3155.2878 3346.6725 6493.4844 2613.4057 10779.3256 6249.0329 6994.0484 4483.1566 3835.9573 4066.3869 9583.7644 12041.9914 76667575 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 34801.9905 6780.8382 6613.7855 33829.1136 5283.7792 4928.1678 12111.4588 14624.1324 9861.3356 9040.7117 15929.985 228931.0089 13829.2512 11397.268 18548.9563 13768.5665 13768.5665 10332.2876 15929.0877 15887.9067 10827.3158 10251.4891 17361.7272 8935.2231 11166.6901 20627.068 24738.9761 32107.6393 24817.5364 19641.3377 22799.421 12810.5772 21290.8949 7327.755 15623.7189 379736708 arsm Metal Homeostasis Arsenic Detoxification Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 22320.1477 7679.1755 7962.1029 11400.0824 5480.413 39888.2001 5949.9841 10667.533 15508.42 30279.4284 200069.7454 16017.0569 16017.5027 18405.3542 21761.0608 21761.0608 10042.8822 27123.1437 19496.7555 13895.245 13995.3635 16387.167 36795.0441 10287.5209 19117.5986 15452.9501 27622.5852 15849.2305 22123.9208 7579.4933 13124.3344 23273.8676 10102.721 21024.3571 292560805 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5099.965 2881.1555 2153.3811 3025.2709 10239.642 3004.1508 4436.9186 3598.6853 11795.8994 11795.8994 5414.6866 5969.8781 3856.4707 3925.6966 5478.5208 2898.4962 7888.8259 3860.8036 7267.0849 4131.7433 3308.183 6262.2637 5027.3505 238759206 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 5405.3894 17913.9549 5939.7015 8690.4251 5277.8243 7914.6662 3984.1615 6158.5708 99148.634 8018.3391 4681.8194 3438.6189 3438.6189 10212.2868 6766.8988 9026.1235 8365.1559 20476.1559 3096.7149 3107.4905 80279.9622 3109.2427 10560.4277 31560.5671 9399.1453 5596.9378 4228.8922 4468.8408 3370.4632 5199.5746 310867702 RgaE Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 7220.3834 7623.037 8747.6342 12303.8949 6352.0411 29972.0937 55421.8077 19335.0144 11258.9794 8566.3242 121623.051 56693.9326 11522.4034 9512.7475 11620.9048 11620.9048 6709.4158 12734.8197 7340.1721 11089.3303 7595.8042 10356.1304 2830.6252 100751.5329 19371.4913 8633.9686 19526.0918 32065.1487 32659.3216 5929.9577 15229.785 10170.5022 4973.061 6542.5431 224520558 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 4117.5808 82051.447 5487.8715 3887.0113 3857.0376 11419.2684 5513.4251 2909.7364 58146.54 6212.9996 6192.616 4386.5762 1955.4506 1955.4506 3979.8653 9328.2774 6674.8404 4720.6817 6216.6856 4734.0406 3155.969 8532.6384 4942.8681 12689.9794 8206.8096 8066.4325 2767.7903 4439.6672 4645.0531 2956.0952 8356.5294 29466070 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12496.2749 7130.4274 4233.1211 2654.7943 3164.6925 4643.5824 3525.8032 2521.8961 99214.2527 4383.8038 6470.8805 4020.743 8199.8579 8199.8579 7142.114 4848.1687 557565.8472 4312.0709 19020.6206 3541.171 6447.0182 30580.5894 10358.7514 27276.0249 6831.3269 2204.1083 4042.2881 3529.8775 2408.4872 199177.6946 333115496 cmci Organic Remediation Aromatics Other aromatics Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 22084.0218 39219.453 32725.5037 31005.0315 7900.8348 20820.9119 167708.0403 13058.4438 26837.2382 26212.8191 15151.6249 585583.8922 37507.7243 40970.3766 27357.5393 19717.2547 19717.2547 19610.4697 42804.8837 25656.5141 28549.271 33327.0203 31205.2077 19158.3488 23075.7175 37374.2044 134627.0175 56199.78 18724.0486 35836.8118 15270.9543 15202.8934 28232.8457 52026.9478 39080.0621 343463013 arsc Metal Homeostasis Arsenic Detoxification Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 14708.8951 14398.3265 29663.5589 10702.7425 4591.2414 4273.7234 9557.0156 7740.6905 8758.4208 21467.1749 139895.3202 9175.5243 12020.5536 7698.229 13293.2125 13293.2125 8450.1049 13094.4295 8781.0247 20216.4781 14898.9526 8642.8912 3669.5034 4202.4178 11258.5962 3846.4257 25727.177 11346.4457 14614.3928 3540.6406 6708.501 11194.1334 3893.1173 31577.5634 188579535 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 32366.2889 8885.6366 15845.3745 5254.3185 5025.9582 6318.263 13459.5694 7831.6663 6991.8594 7136.2856 167197.0358 7108.2155 9206.8721 22771.8335 6491.1699 6491.1699 11211.7686 10939.4426 11031.7127 17188.2784 16259.22 7580.5575 7013.7028 13845.7578 4875.8647 32163.1155 27318.154 20900.2684 3691.4217 6893.1441 7618.3597 8391.3753 7389.8052 71383714 nasa Nitrogen Assimilatory N reduction NA Symploca atlantica PCC 8002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Symploca;species:Symploca atlantica; 27008.6525 6698.0471 9933.9216 4272.5605 12109.5913 6313.945 17889.909 11302.4379 133820.8 11187.7548 20174.4355 7752.7516 11911.4197 11911.4197 5143.6029 101041.0621 9662.4174 34639.515 7894.2532 13207.3885 7045.8554 4419.8716 43099.4534 11941.7608 16568.9915 9098.1654 10784.1714 6466.5336 8377.0455 14187.3932 4766.4699 12517.0522 21223376 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 188154.1785 36406.7814 7127.9029 9067.5148 55186.5539 12079.0762 12173.4829 16781.9469 20661.0571 241647.2424 23672.7892 141829.6796 19553.3113 22070.0646 22070.0646 16033.1398 207878.6213 11914.3066 135480.9362 24217.7475 24467.2997 9748.5504 21951.2447 15483.064 12613.9744 55546.9666 18417.1679 20973.4071 13276.3384 17298.0944 23294.2405 19455.7473 37004.3935 189354105 arsc Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 4904.9679 2560.311 2236.9789 2236.9789 6310.8651 2652.7741 5075.9628 8888.2052 3785.4018 10110.3594 9398.0062 170741185 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 151184.1437 178792.7926 308398.2828 103462.3167 106743.7841 47282.4971 60439.8051 118636.1722 107959.4303 116642.3574 125672.4426 1035719.2049 120093.7242 171775.0708 81279.8239 115934.8528 115934.8528 59165.444 118183.3709 63423.0769 123758.9712 330892.0532 79869.2105 61540.0995 57372.1436 93199.1615 71401.4515 294979.4393 117572.4175 122000.5267 242753.7434 84245.208 78491.0043 46994.1443 135260.4779 385677079 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 3607.868 4395.0007 2385.2738 5630.7918 5628.773 3939.0762 4617.4545 6463.083 3764.6319 4189.5654 10259.631 5312.5224 4941.6927 4421.2626 7301.0379 6945.9567 3107.1857 5567.2267 3542.6985 8250.5391 5648.7428 5636.2133 4947.7406 4643.6731 4369.6488 4673.608 251799815 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 147850.6446 18925.294 56333.5004 441053.1562 134574.4883 290779.1969 316840.4249 227891.5146 32028.4207 112457.5318 156881.8611 101105.423 2296536.3978 139056.4156 69360.8183 81909.7286 61421.7522 61421.7522 96325.2806 107279.5159 69051.191 154245.7256 98185.7398 168743.799 35482.0986 38980.6597 102927.0418 136447.7119 209287.6447 72611.6453 123858.2226 43816.7161 64155.2385 59347.6867 64253.4636 446373.6721 172072011 terc Metal Homeostasis Tellurium Detoxification Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 11947.7815 4510.2759 31756.5627 12597.5366 4174.8066 13469.6048 6509.2923 3893.3669 5885.873 3582.8855 196474.8848 5231.2157 17200.1453 7938.6785 21466.8992 21466.8992 6200.1571 10545.7433 6706.9364 12494.7289 12109.6488 6166.8902 3800.9944 3516.9389 11688.5575 7226.958 19768.3911 12957.3182 10694.9792 10516.8292 5232.0819 25333.3154 3261.8368 20909.5632 164456158 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6792.2837 17282.4879 1298389.2708 4977.3214 13398.6457 3745.7724 5223.1944 4016.569 133828.7932 20594.7864 10194.2852 7270.6879 4961.4196 4961.4196 5631.0263 12085.4029 6596.4221 8960.7267 21578.0106 4482.1709 10284.5688 3164.1396 17007.4176 4686.3958 10986.5511 4046.3273 14516.4741 4353.4307 8099.0193 6349.709 295431983 linb Organic Remediation Pesticides related compound NA Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 178280.6955 66961.2091 70836.2026 36800.112 28230.1106 60896.5991 85182.5193 77814.633 158950.3098 119564.226 149551.0633 1121792.2535 74266.0791 167128.7556 115147.2241 148537.6339 148537.6339 60789.8833 133256.2522 209555.6637 182051.9733 140742.1663 110131.2982 88653.3343 81460.0527 911586.4199 91872.2168 203223.4322 201894.4918 227969.9357 95840.6788 114046.5316 130344.4888 63658.5827 194410.8244 237500701 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 10860.5603 26902.0399 18903.1021 13971.1785 2051.428 4694.5848 12709.5464 8348.0201 10749.4545 4581.765 72902.9276 6388.0981 37435.9755 14701.246 6699.9792 6699.9792 6917.6641 12278.6247 12032.053 56972.9521 11043.1674 5760.4061 4128.669 8684.2828 12307.6304 5187.8551 27405.6264 8213.5959 9672.2507 7398.328 6224.1831 12552.8844 5411.7101 13602.5875 312958202 terc Metal Homeostasis Tellurium Detoxification Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 42269.8459 18633.6007 124548.1939 34209.7581 17458.2739 30429.4377 44869.4854 55883.7513 16974.5678 37939.3542 31910.7933 21976.8074 937123.4661 33510.133 71226.4005 36919.7842 52984.1403 52984.1403 28808.3374 50530.7769 36693.245 49598.9849 119532.3605 51574.3157 29523.9429 28512.4068 63744.0514 18908.822 68765.2051 36477.5554 50121.1364 26117.5599 29867.7801 83716.1675 15972.9581 68315.4604 116740541 xyla Carbon Cycling Carbon degradation Hemicellulose Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 8032.937 517640.0612 14533.5222 9264.6 4000.9118 6266.5444 10767.4308 4616.9595 212588.4113 7927.9591 7436.699 4866.8551 7004.0902 7004.0902 5274.2937 15933.8948 9761.7488 10309.8523 11258.9906 13954.9691 7637.2145 16170.4056 36494.3395 26897.518 26723.0448 13219.0157 15512.1941 4977.5074 8822.4201 10252.9803 6056.6344 13576.9939 345568584 rgl Carbon Cycling Carbon degradation Pectin Arthrobotrys oligospora ATCC 24927 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia;species:Arthrobotrys oligospora; 8211.0752 9713.5517 4659.3217 4410.3744 2336.5889 2282.8966 323273004 badh Organic Remediation Aromatics Other aromatics Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 12773.0808 13653.9361 7548.7707 54290.9556 6165.335 34607.8022 10220.7022 2628.1303 7619.4599 17114.3625 5291.2006 169346.1145 10547.5825 12122.8868 10192.0009 8321.6263 8321.6263 8508.8523 21080.2212 10866.8095 12747.2362 26129.4322 12362.1263 7630.9721 5316.3897 21386.0579 4914.6487 19368.5676 23826.2351 24169.2527 11971.5752 13953.6591 9659.0357 18475.6097 12947.2302 255502823 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29465.8106 5922.024 4821.3367 11144.7121 36607.3013 4978.9816 23128.133 15097.8794 12187.4544 196671.8806 19047.0733 77039.2567 7676.3658 19164.4104 19164.4104 39825.2476 20198.0412 12809.2908 139113.8799 37935.2607 10765.6767 12698.4246 7393.1738 14619.3309 6828.3238 25219.9366 20952.8975 32893.1846 7412.8651 12910.1411 12376.3383 11934.3833 338071.3277 2648697 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 11523.4432 68955.3253 18749.6887 64260.6461 18778.9511 18105.905 10503.3664 16219.2376 9979.4864 23968.5971 13233.6955 262606.829 19707.115 11428.1072 18550.8806 12177.1813 12177.1813 4641.317 14156.2496 18799.5742 6466.1988 11781.5051 9317.5999 3950.2046 6452.6075 20117.0759 5904.6226 23044.9237 17141.8476 19250.5397 11317.6609 8839.2649 10229.3491 4986.5934 9843.4454 227069547 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 26746.3762 40795.3084 25410.8968 10561.8697 12270.2209 5694.3963 6551.9632 9373.2744 8652.2438 136771.1821 11589.4458 10256.8237 7537.7507 49563.8356 49563.8356 22882.9085 15719.3999 15649.1439 9603.2016 20890.8681 13043.9443 8616.1293 6688.7665 16701.2834 14321.913 36162.9594 19654.0403 14733.3138 9728.6709 11243.881 11096.3518 12014.1371 16343.6784 374331727 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8750.2741 61584.5617 4475.8152 53273.0461 3174.5085 5307.8652 83667.026 4846.3747 4587.4903 15235.4995 15235.4995 6401.1301 4538.4518 5123.5618 9790.0062 17319.0706 25232.1596 2533.2734 25148.6361 61977.3068 9363.0573 34150.8509 5412.0234 1760.5011 3709.1185 3234.2135 25158.0654 14573.5168 334881264 ppx Phosphorus Polyphosphate degradation NA Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 6339.0583 2898.867 2315.8663 6570.1376 5437.3504 139070.1592 6288.2504 5254.3127 2979.2615 2979.2615 2784.1632 7099.4893 7149.9359 4970.9002 5511.5083 6391.9801 2357.2723 2368.3971 9018.8616 2819.2629 11132.2256 5061.5946 7903.1529 1666.6901 4403.5924 4285.9635 4355.7083 5671.8537 259418612 phn Organic Remediation Herbicides related compound NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 172999.2977 19766.4811 57934.6032 199121.2849 202178.993 105918.5748 115115.2607 169696.732 278350.2319 119654.7304 131699.8798 90875.7736 15901614.6489 120282.3674 116462.5794 221813.6702 140832.3879 140832.3879 51065.6037 144310.0814 110335.5038 137149.6871 89366.5296 113409.6243 73411.9455 102301.5895 213753.1755 71082.228 150468.1032 138049.3254 113823.9892 53162.709 99520.4032 91315.9654 51588.0872 90675.7892 300390257 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6664.8464 4231.4398 3261.0324 2504.4593 4781.3279 9528.8385 6802.753 4908.6536 2498.8666 2766.5134 11707.426 5042.9141 1855.1681 5009.4057 2634.4899 256731042 rgl Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 31884.7995 33427.2983 33543.8073 31520.8637 18521.417 9141.1739 27575.2387 25772.9668 17510.1924 22867.2566 30882.5684 21474.6034 542017.5267 26564.8525 53329.6331 24083.1653 21515.1375 21515.1375 18125.9398 52517.0684 22211.6628 229081.9556 42266.8449 69549.2915 20016.2118 17766.3127 34033.7023 18245.3824 52235.3404 28345.633 31118.4154 14479.2493 29296.8307 24758.8958 14982.0062 52036.0437 383452427 amyA Carbon Cycling Carbon degradation Starch Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 11280.7661 28330.8873 17904.7321 4331.531 32650.0704 8507.3116 6254.3764 162269.7979 38254.5369 10836.7903 16680.9466 5089.905 5089.905 5806.2709 14729.6878 5691.124 8454.0502 7780.7765 5932.9652 6858.6948 5602.3158 9393.1622 5772.8634 17377.8289 10358.9331 10536.8113 5174.7035 7922.6115 7390.8283 16796.0858 8754.6575 32476743 cysJ Sulfur Reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 18384.1956 2507543.139 4996.7354 431825.2683 7247.0854 3766.4376 6974.8025 4419.5022 3352.6977 21706.7871 6678.0173 181257.5076 13588.0623 6644.5162 6644.5162 65021.6102 214759.7631 12390.377 7260.627 11941.2528 7557.3352 11055.8753 17971.6589 7709.9057 45434.1743 57716.5432 18956.7698 21991.1818 18310.4157 23860.5261 21865.7608 7581.9876 10062.4942 154284866 nirk Nitrogen Denitrification NA Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7852.4283 5265.5423 7196.9471 81599.6186 97884.5065 38928.6929 12349.3399 10936.6073 18890.6152 112074.4895 7682.3168 10543.8061 41478.0062 9227.145 9227.145 4557.7858 13729.2875 5705.5328 7985.9919 102513.5114 11393.4385 8928.6235 8458.0207 7908.2125 18320.295 51235.637 9123.8228 22792.4449 16000.8898 19280.2219 19098.7213 5505.8927 5372.3791 304398374 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11248.7462 12824.4732 5423.5008 15534.1915 5404.0477 6916.4847 4407.1337 7065.7235 7440.842 4895.7948 159499.437 8307.1061 7054.1744 5303.8386 4284.8629 4284.8629 6903.4646 11659.8167 10751.4496 7848.9307 12324.6512 15269.5724 5789.5876 4012.463 8685.8125 8236.4658 22725.2013 12181.0289 12442.5924 3621.9043 7553.2852 6535.9071 5742.9849 15051.1201 283484399 pec_Cdeg Carbon Cycling Carbon degradation Pectin Marssonina brunnea f. sp. 'multigermtubi' superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 4748.7277 3155.2767 3689.0335 3033.7765 5227.7297 6846.9184 3597.6935 3597.6935 24603.8512 10186.2332 5659.1765 11845.5768 5451.1336 2593.9922 5631.4534 16219.423 3940.3428 3662.1241 2962.3103 4325.4758 6968.4255 8439.5035 312140696 pcag Organic Remediation Aromatics Other aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 5302.663 6287.0622 8083.7951 8421.5305 3416.9565 8046.5679 2139.5222 3855.5855 7852.2731 4248.1344 115223.0722 5321.6847 10825.684 6169.7711 6126.8344 6126.8344 5036.2817 7385.087 5515.6809 4942.682 15424.6857 7801.2094 2715.9089 2748.785 8138.1289 2442.6378 10098.6283 5324.3944 15956.3928 8258.3052 5388.2008 4198.058 3689.6946 6028.4755 240144094 xylanase Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 49943.536 110693.2514 68718.0555 22005.5242 4827.4467 37001.3649 22829.6392 46476.8063 40894.2083 77177.9416 46159.0352 576200.4396 32406.2913 45522.5927 44806.9329 38392.3337 38392.3337 25372.6649 65416.8716 34416.1513 53826.7618 44400.7723 49173.6045 27063.6341 70786.6703 75306.6836 60601.9115 128471.2344 61068.1681 171887.1945 39574.6992 47501.4021 44277.9763 21077.06 38173.8965 332298259 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 11544.2151 61764.7777 25749.2545 79927.5148 112382.8484 10637.8358 2643.0609 26327.9293 10720.325 18055.5227 417848.9606 21021.8297 23871.516 30497.2528 23257.2713 23257.2713 7547.4542 13653.2145 13124.8746 17315.6742 10966.879 2540.5934 44026.5277 44642.6084 6151.744 24824.4924 24252.3171 37698.6626 4348.4996 11934.2586 22513.7708 3305.5709 259476466 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8165.0965 42611.8327 5145.4273 4153.4611 3011.2231 4624.4216 8180.5528 2544.4271 3418329.3373 6482.3615 5847.6284 6142.9423 3193.5687 3193.5687 4303.517 11278.9846 7463.8464 4957.9333 7132.7341 4436.0145 2739.9867 2936.2894 9948.7645 3939.144 10959.1021 10377.805 9780.9934 5580.4011 4719.7248 5917.9942 3707.4684 8508.5304 85062816 amie Organic Remediation Aromatics Other aromatics Nocardia sp. YS-2002 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 8511.5157 478383.386 3796.7416 8791.9551 4772.5942 9106.7828 9504.4591 74093.0369 13334.5236 5161.3909 4862.9194 4862.9194 9539.068 14984.0451 10652.802 39152.3035 5327.4978 6975.7985 4635.5234 7635.429 7724.4279 4878.6831 16737.3162 6993.017 12827.64 4362.3145 7153.2122 21875.8588 5367.2282 10256.6234 327177916 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 22113.7275 6890.7878 46301.9685 20595.3343 15290.1718 3035.8375 14417.4779 22792.3581 17996.6687 210062.758 24021.6566 15381.1563 15005.2443 6612.0664 6612.0664 10345.5934 20769.148 18193.5912 11767.3271 21345.1464 19000.6471 14364.9965 16387.5877 12061.7888 6267.4969 41855.858 34367.5053 28687.9721 9049.4457 33927.74 17751.8404 9775.8117 21000.889 383644164 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 22525.1741 10662.5196 14458.0424 33123.2495 23137.3553 7257.4174 17097.7152 22048.1231 11383.1738 17855.4274 24168.84 8444.1405 459745.8616 24282.4255 23608.9736 12404.1429 21190.9472 21190.9472 12921.1286 30414.6131 21479.4542 25537.2748 19533.5435 27466.4813 11159.6901 12169.6521 29939.9324 30437.352 49030.3276 18817.7796 23262.8249 11778.1942 366291.6011 16378.6641 14084.0951 36235.1331 307774492 TIM Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4467.0619 7261.7754 3447.1451 2999.1473 6046.0728 89739.1931 4197.4316 4235.5662 2827.4999 6616.9932 9989.4216 4672.7626 5280.7817 2758.5676 7599.0908 18389.2371 9935.058 2561.5654 3179.4397 2826.5791 366160705 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 5874.9232 11390.5875 38482.7378 4717.7542 16002.0696 13183.962 10731.8068 89841.1001 15550.6889 10976.355 239185.4268 10506.6638 33882.4194 16687.2572 45465.2854 45465.2854 14744.8105 28943.4204 12660.475 63526.8217 16461.307 6423.551 6555.3613 16183.8589 38757.902 29122.106 220318.8053 26333.668 52989.2148 112547.0765 17242.3765 27795.2952 68226.4073 9703.3512 46307902 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20148.8572 14277.2411 3112.6398 2973.8705 3781.0326 61261.8045 3481.6076 8089.674 8089.674 2929.9312 5009.9336 20234.3059 5694.7951 5176.48 4534.8718 111020705 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 23761.3305 3708.5008 3555.4949 4287.4945 6536.5957 4358.7476 2554.1333 4505.9448 7858.2337 6257.2606 5172.9366 5172.9366 3491.2298 7570.2233 4839.996 3794.5401 5476.5102 3009.3826 4390.0182 9486.7514 3132.1599 13581.8646 15734.8985 6425.7489 3011.1654 4899.0875 5126.9562 3111.1422 5459.8882 120595478 ben_bcla virulence NA NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 11343.6828 30844.6489 9353.5135 8383.1492 11442.7944 10409.2924 8730.1997 5654.1339 7755.1755 17129.9828 6248.1884 172616.535 19158.2689 11838.8156 8746.7435 8590.6874 8590.6874 5706.6294 21143.5519 10923.1137 36105.7214 12358.3635 9275.737 6754.2777 6915.9917 11513.1268 13621.3732 30346.2389 5557.5874 30535.6423 15898.8457 7129.6529 11286.4674 7964.026 10721.6003 21224847 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7739.0249 6203.1865 7850.0591 11372.0413 2037.5675 5168.1749 3451.9168 4568.5125 71629.0856 3985.4902 6000.5661 5887.6905 5000.4226 5000.4226 6706.9048 4043.3827 13393.8327 4266.2019 2727.1324 3198.6921 8529.3285 17786.2401 4232.0339 5728.825 2448.9283 2731.5578 2800.4435 340247221 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 42052.8899 4639.8659 5493.9272 50911.0275 2695.8093 9659.8023 19368.2486 19607.6434 13632.9311 9321.3031 115678.0567 15455.138 15381.3284 13825.8299 20073.9879 20073.9879 8198.2601 18053.2154 15495.5842 23967.3068 16441.9788 7640.7273 12950.2773 10076.7764 21031.9118 9687.7287 50479.021 10741.1698 15988.4971 5652.7837 12967.7891 17152.92 11872.8564 6670.911 12667600 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr857-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 17432.1201 44238.987 14519.3033 25624.5226 10936.1007 26618.0178 32171.0223 267615.1277 11442.6983 22795.2998 14556.4314 1264363.4816 22489.1172 20295.5812 22103.7306 21304.7737 21304.7737 10518.5188 23589.7631 16507.0279 17851.4541 22867.1814 24384.9146 18219.8054 15228.9505 96895.7674 19780.1214 61410.4083 20903.7154 29970.2237 18727.5689 19631.3334 15444.6582 14166.8817 12572.9686 377527685 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 18857.806 2890.2394 4575.4519 4627.8559 6703.0569 11448.0671 11448.0671 14107.6304 2657.4393 227822140 linc Organic Remediation Pesticides related compound NA Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 29170.9025 49592.8091 56051.7222 57145.7834 128863.5952 39683.2192 38658.7081 519306.9116 25866.6367 64628.2271 159431.1074 27872.0641 953538.4645 57910.0935 118021.2815 87227.8513 39534.9752 39534.9752 27232.605 113161.6973 115503.7124 38390.2296 76417.3541 44893.0322 21190.9419 47687.4865 94863.6216 30696.0692 127296.1622 48302.7033 63184.748 88813.81 40316.4087 75254.9565 30920.9063 46984.5493 219676411 arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 18454.1092 16589.7726 3951.7504 2500.514 5043.7673 6147.7548 2781.3192 122467.1555 6418.5146 5675.8574 2045.5336 2045.5336 4151.8309 10663.8603 8370.8332 8161.2946 8612.1911 5914.534 4303.346 3829.8615 11895.8533 4957.9514 13706.0786 5575.8681 7229.9471 3316.4937 6716.6417 5983.0729 2833.8787 4881.309 50982474 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5283.9457 24199.4965 135891.2742 11345.4003 17034.9581 49851.6366 3153.0817 3153.0817 4686.495 9442.7821 6921.6278 6109.3155 33057.9163 8106.3421 6050.1191 22265.5515 37519.1663 71649.5569 2440.6774 27307.6435 4212.5964 2834.8306 147886056 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 488792.0705 19288.4782 44149.7738 21177.7134 8537.7567 127052.8791 12312.7148 90564.0686 19853.1019 18149.0209 21576.8225 255170.5543 18898.9081 66503.7768 32293.5221 13957.8225 13957.8225 11021.2343 28306.9435 14689.4461 13443.1311 239851.6847 28090.7503 16505.3851 21803.1398 24885.8231 40196.6393 48822.5216 23669.415 83900.5783 19588.3347 82409.0079 14102.7937 16497.4286 154038.0267 333486238 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10986.1524 10498.1381 6153.9846 2333.353 5597.6975 8075.4862 6566.4501 13834.9056 6897.7112 395301.7055 13480.0845 13025.5385 9874.7865 7727.9416 7727.9416 4607.2488 18876.8892 12151.2405 5645.0608 19355.4298 88141.6719 11761.0493 6800.2914 19171.7502 8490.8477 31816.2589 16314.0645 27258.402 9699.2616 26076.8189 10791.5561 5414.9407 16015.021 104304993 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 56547.6319 9568.1474 5144.7626 4946.7678 19647.0026 5982.344 195945017 mer Metal Homeostasis Mercury Detoxification Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 7259.7154 24008.5234 10284.706 7262.7479 7182.9943 10886.0323 4584.7496 7724.2565 10190.9335 9564.8895 171508.2112 10127.952 25498.3071 9532.4642 9831.2558 9831.2558 8764.5891 17933.6278 6331.705 10558.565 6716.751 10206.118 31181.7226 24128.539 13052.9616 8058.3485 31122.4444 8319.8682 16742.7798 4363.3878 7985.9769 8027.3351 5364.9905 7055.842 346644313 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6873.1826 15057.8474 24096.8963 9023.9636 3914.9297 6444.9361 3678.6478 57182.8099 11420.0354 65350.5314 13637.3728 71671.319 6285.4382 9781.577 9781.577 11606.0506 7592.647 4695.2057 6344.6738 6933.328 11550.9296 4525.9637 13723.4442 9009.046 10029.8193 6250.5231 6010.3056 5373.8228 4565.1449 160933123 ppx Phosphorus Polyphosphate degradation NA Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 3822.4378 2878.9802 3189.4258 2191.7375 2962.2387 3565.6345 2207.9907 81655.9052 3558.0751 2882.4419 7782.3379 4752.3082 3587.713 4848.4869 2410.6399 5704.0642 10120.3542 3760.498 5022.8852 1844.2985 2902.9814 3171.2216 2605.8991 5037.8804 371479161 FBPase Carbon Cycling Carbon fixation Calvin cycle Acetobacter pasteurianus subsp. pasteurianus LMG 1262 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 8069.6004 115311.1387 4768.3765 5171.4495 2319.5433 25177.8159 2396.108 6361.0228 10192.2664 5688.0488 189928.2199 9364.1857 4159.9213 6330.7501 3658.6735 3658.6735 4467.4865 10679.3833 7222.8482 7515.369 9972.7314 6521.0807 3482.0864 2905.7271 6670.3696 5152.564 18014.115 4484.7348 10349.4425 7283.2751 6623.5345 17739.0234 3196.6948 28271.1461 111075058 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Heliobacillus mobilis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacillus; 16586.511 12491.5239 21429.4694 12729.4792 11147.8911 7711.0465 11906.3787 18877.2823 7230.6368 368246.2746 18849.3611 18459.5917 9789.7916 7224.9645 7224.9645 12574.4298 20911.9777 15806.3931 19064.8189 21293.7019 29086.2931 7298.2822 7064.6033 18000.7068 6799.0769 31198.9594 17793.5431 17430.473 7188.9875 9299.3088 10114.5245 8782.2406 24320.2034 261191496 glucoamylase Carbon Cycling Carbon degradation Starch Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 11068.2191 9400.828 7261.9559 5450.2549 3226.7925 6900.6145 7709.6836 3558.502 172647.7461 9988.49 5674.7518 3596.3221 3596.3221 6934.0223 13338.7888 10537.1671 6585.0603 10411.2145 8050.4884 5035.4007 6178.3938 11752.1864 4299.7169 18119.9907 13341.7968 13404.1673 3492.2405 6037.7242 4554.8705 13151.0473 103484179 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5250.3912 3297.5162 2826.6608 4965.261 4496.8623 28039.6087 3265.2894 6986.7562 4583.4169 4143.7382 2398.1633 6657.6737 1714.6193 2909.5112 6092.1379 91801887 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8094.1107 4689.893 8493.2437 5537.763 19548111 nirs Nitrogen Denitrification NA Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 4957.1363 17104.9433 22587.0757 14775.0181 4539.853 3907.1451 103757.6979 6356.6922 7589.8881 5623.5697 5375.5664 5375.5664 3133.918 8906.2303 4572.7746 14323.4875 4566.2422 2674.5207 3375.8273 7144.1135 8637.2568 19128.506 8020.5671 10266.784 6253.6906 40018.2572 4062.4395 4944.7034 169611184 Sir Sulfur sulfite reduction NA Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 28514.0283 10279.9997 11262.496 11659.048 67014.0822 38868.3897 17231.1706 91110.581 27137.6695 10128.7185 282996.6704 47467.417 17910.5314 14441.5887 12937.3452 12937.3452 9472.714 36348.9335 17124.8131 113308.6354 77288.9286 39339.4759 66889.222 10957.5115 27722.4295 18210.0691 51433.9016 27203.6511 26032.3807 9239.8664 234740.1898 41010.4635 47382.3426 19791.2226 398147904 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 38821.7515 52272.9276 284961.1509 82680.99 19420.2203 49361.3881 42385.2124 17369.4618 23689.9891 46021.9727 36999.1149 16416281.9207 80331.9645 71421.8452 148530.858 51009.858 51009.858 17012.1432 44205.7808 26952.3016 274923.0985 69627.3953 40048.9982 13214.1025 55160.3726 36201.244 28046.3477 77908.4426 43778.409 50886.3445 24242.8249 63781.3708 61715.3384 21767.5339 28169.3089 320149927 ppk Phosphorus Polyphosphate synthesis NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 10607.106 5667.5589 7454.846 11196.6998 7074.0975 210197.9143 53527.4534 42848.2687 7432.3959 32912.1609 128277.7714 10708.4803 11212.4939 29474.4117 10442.6441 10442.6441 9850.6798 26954.6263 11841.8277 13837.2764 30364.6566 49218.0088 18578.4973 10856.3889 23149.0819 11744.8773 29735.4623 17720.6653 18340.1039 6606.4338 18121.7276 14029.0891 13184.6594 26513.3685 56312526 bbsg Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 3728.5874 61956.2144 8093.4755 7195.1522 43810.6344 13369.4819 14513.5538 5321.1572 4410.4914 5070.7351 7065.0134 259398.4322 5619.4048 14078.0399 34813.305 14285.0524 14285.0524 4175.9994 9435.6459 6473.7815 4415.4861 92891.7066 5981.79 2205.7821 8044.9693 18958.6077 3372.7594 16599.1515 5828.9852 10602.6408 2624.9695 4585.6999 6953.8994 2993.2238 10932.436 139478301 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 30614.6908 1265062.7476 13532.4539 199955.1229 12822.8762 14492.0877 15648.8487 13205.2787 9477.8732 32207.524 32671.1928 29709.4451 8560650.5489 25353.3764 63313.82 16430.1555 32366.619 32366.619 190584.8095 119212.9427 27961.0071 59169.0349 36434.5844 21374.5474 20037.7916 21182.6141 22305.6356 19407.6232 75732.2539 49038.159 33816.3072 20533.5749 23752.4698 215503.5259 17409.232 27676.3239 152985552 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 82876.8299 169045.1922 39960.9163 20207.6834 10592.023 26541.9147 37597.3764 62841.4533 37522.2192 129706.4678 51242.1186 52264.6629 776379.363 94218.8567 139110.38 92157.68 60487.1504 60487.1504 58183.2492 113024.9601 35211.9348 49008.4594 131078.9955 64307.0335 35619.3452 63227.872 83989.4422 44969.534 92628.4754 55919.2809 61419.1112 29978.4962 36363.6731 53588.7424 87204.1968 74898.6078 84375977 amyA Carbon Cycling Carbon degradation Starch Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 5525.3678 7092.8028 2076.1968 4448.786 2503.8166 3338.7487 6393.9535 84686.7993 6181.1788 3367.9303 4263.6006 3531.393 5779.7468 4638.7699 5437.9184 4696.8674 5452.7869 2574.6186 2678.246 6845.3541 2338.3341 10078.9148 5158.9177 7553.9238 3136.215 3641.9382 3802.5379 3202.0153 7947.3764 119472458 arylest Organic Remediation Aromatics Other aromatics Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 5877.3433 23779.8701 35984.9845 3670.0394 4958.9895 112701.3909 75226.0644 6628.2042 6628.2042 10597.4301 7275.7488 31695.6525 2860.7134 12811.9635 2376.2559 12011.3959 5710.0143 8752.2924 16725.9741 8086.9874 4681.3808 23272.5642 242215141 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 63452.525 11654.8883 117305.4414 35165.412 35635.0285 16183.3927 39420.4902 28401.8412 18919.6927 95427.2492 74983.6113 50134.4539 1331474.3946 89640.1607 83404.5172 97295.4696 68912.8203 68912.8203 65861.9038 54892.6363 36932.3228 83661.6478 36200.932 40249.0845 19563.578 20247.8653 56293.9361 29009.5646 74667.0159 49399.5946 47908.6595 15946.3344 22143.982 32266.1651 22213.0295 378641.043 90424394 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 206898.2594 36329.3429 23691.6366 11949.971 18704.8681 69536.2305 211508.957 43562.1066 31592.6126 178490.7838 54194.3837 675679.5699 53989.4933 32719.9925 91150.0182 67487.4184 67487.4184 38325.5723 75511.4237 24827.0349 86008.6953 85398.9869 75591.3318 41441.9835 37134.5792 48105.421 104933.1614 123350.5816 87114.7218 71287.0907 31643.4734 51032.6961 62911.2853 34077.6459 224545.8316 121609909 phn Organic Remediation Herbicides related compound NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 12925.6418 50324.6506 336294.3426 495439.5254 66331.9092 21700.7058 19950.0015 48923.7612 8749.2881 17697.7876 18379.7312 12363.3528 557376.3311 45110.9922 29541.4018 30336.2653 23454.267 23454.267 13793.2198 37808.2901 20389.0872 9074.7037 15535.5691 24069.7548 8610.3134 10579.2459 58197.099 9548.7925 50250.6361 26446.0105 45676.4367 13132.494 14997.5208 12258.6436 24900.5398 331614.5617 291294687 xylanase Carbon Cycling Carbon degradation Hemicellulose Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 12887.0778 13895.3324 9591.1874 10289.2946 4633.4824 8950.7758 4216.5265 9023.7832 16876.3275 15002.9011 514001.4136 13706.5728 8054.8863 33260.2404 9824.13 9824.13 8621.146 17567.9536 12801.7932 12824.2765 15825.7901 11465.4635 5563.3552 5469.2045 12446.9214 4554.4374 24219.1239 5152.6651 27673.8254 5095.331 10367.1025 9008.9397 6166.8237 28499.3199 328915694 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 17206.7836 9691.3468 17885.6678 14475.3787 10325.7166 7365.796 26112.0294 3383.1786 10956.8822 32281.5237 306773.0806 56737.3152 18053.7318 7287.2058 19042.7316 19042.7316 6621.4208 28733.7302 8143.0056 18830.0511 182788.3641 17891.0886 6428.7199 9548.4466 21738.5018 11525.0326 34049.0301 17278.1709 16015.6099 7158.2985 20441.2335 22959.8526 9831.8364 40142.6799 1001518 TIM Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 21631.7585 95490.3416 5997.2157 8609.5871 5638.5376 9142.2065 19580.272 8840.5357 9579.034 11556.9953 12102.0059 7950.6869 9675.0577 6978.2099 4220.1699 4220.1699 5438.0943 15291.9886 7544.9144 18424.5026 11440.0025 7228.8957 3572.1636 5238.5302 11464.4729 2318.3445 15401.2254 13755.4903 11282.5184 3575.5789 14115.8673 6047.8208 3536.2816 14983.8817 255992484 urec Nitrogen Ammonification NA Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 5067.7788 4333.7215 5651.0515 5379.7874 4094.5307 6153.7339 6945.1602 2968.8744 108355.0157 6756.3523 5432.329 5574.1684 2084.3335 2084.3335 3507.3185 12903.6534 6196.9858 6193.4492 7301.6852 13431.6196 4034.0014 4005.208 9645.042 3290.6804 16046.0944 10842.7341 3716.1628 4613.7621 5820.0326 3395.5552 8716.0415 381358852 sqr Sulfur Sulfide Oxidation NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5448.5848 8268.6277 18559.7653 6958.5534 24242.4637 4304.5084 8137.1538 13932.4498 3338.0369 142035.7931 17140.3644 6466.3786 7647.5473 5937.9811 5937.9811 4784.4254 16806.4481 10296.5777 5008.0103 36667.4021 11539.2209 12905.3258 6391.6247 22312.7478 5149.8828 19593.2802 11689.3354 32746.7453 7629.5497 6881.7869 8424.2944 25464.7692 10826.651 357265842 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Crocosphaera watsonii WH 0003 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 139293.8153 37554.4333 29367.98 19212.2028 11132.376 11501.8303 12946.3456 4234.9254 27292.7559 26060.9979 15597.0153 381495.2207 29769.4058 25845.4931 26311.6478 14995.1346 14995.1346 15845.8962 61184.7698 14861.8463 16508.7258 27552.4487 14670.1699 13338.9553 15850.9528 26106.0841 17149.9571 31529.9735 16157.1971 29916.242 17083.3706 15578.5225 14274.8744 14362.2668 18009.7551 364566812 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 40303.1321 12427.7559 29919.794 27969.7201 31060.7043 6086.9035 47318.0318 26004.6791 23888.757 85039.4253 32609.216 62321.4628 703058.4041 46735.7466 55116.4572 38776.689 36906.0465 36906.0465 24296.0173 114656.8839 45625.4169 46494.18 47435.4663 55293.0669 35544.7228 19808.4624 42323.2426 55117.4269 103424.8759 61911.4782 50145.7818 21543.5743 88293.2048 45267.1322 30283.9069 49973.7723 196180418 mer Metal Homeostasis Mercury Detoxification Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 7823.9117 5136.4782 5057.1682 12792.2908 4530.306 2947.7875 6654.5237 2833.6808 106979.7014 80595.7998 2282.9526 2282.9526 474836.4768 6690.9293 6201.363 1100261.3738 9723.8558 3910.1741 6816.2792 4506.6014 8662.3546 3507.5885 13593.8865 6179.0626 7699.2574 3847.8564 5005.8199 5301.4002 5238.0674 9402.9044 302413097 pel_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 6851.2151 10992.3886 5542.0862 11834.6783 2839.0385 3523.7946 2020.991 7312.1299 11377.3777 8296.2309 126790.5003 11640.4968 9037.0146 14293.8512 14479.4263 14479.4263 5838.4541 16266.3294 19950.4704 3872.1647 15674.6073 11893.8501 3408.8622 21426.82 12940.3003 3217.2429 18176.8398 5172.3013 11307.6192 5419.7019 5714.5095 16165.5238 3807.4839 4874.5321 83576241 arsc Metal Homeostasis Arsenic Detoxification Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 20595.6912 73096.3319 7133.7133 6980.6163 22791.1758 14241.4558 17427.1508 30317.6288 13042.6711 16062.5696 34276.5836 15363.7013 226485.7351 26686.1567 46891.4736 23475.4906 18029.3596 18029.3596 14362.947 33910.2626 32173.08 18161.8041 35304.0847 18054.5988 14761.2099 17205.7312 37397.9031 13488.1448 75116.8405 37164.7566 43750.6494 23962.6929 30977.2067 28773.3681 17735.1724 13032.23 219683514 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium animalis subsp. lactis AD011 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8887.9177 178950.8063 6834.3408 10547.0649 10837.8239 593414.6707 8853.989 3190.0876 13832.9942 13646.6701 16545.5862 272937.0205 19397.5364 28137.8409 17702.4556 12232.6189 12232.6189 12431.9496 18299.9084 27725.1219 16485.9598 62556.4195 15524.4494 29854.1634 18733.908 26744.2655 14508.0031 28988.6788 21094.1674 26261.8595 14680.7314 18681.7566 15530.3662 10576.6042 16079.4162 295977338 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 55305.3875 52823.8834 124112.5967 109615.4961 15272.816 49260.4067 102064.1776 26943.9132 65449.9284 76543.4001 84987.2659 686288.2723 36386.221 60378.3257 64753.434 57109.2097 57109.2097 26102.3967 62200.7003 97470.3472 56021.1042 122854.4627 264304.8986 50294.9223 66475.7363 52863.2661 125848.2554 172385.7923 110884.343 58760.9315 118815.202 92116.5123 73948.7815 76708.3359 266587.2833 90420383 exaa(moxf) Organic Remediation Chlorinated solvents NA Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 64826.8432 17551.9725 44204.749 53498.0906 42477.0881 18189.7488 95068.5762 42655.4821 162051.2137 32666.9336 55120.6595 35794.232 548809.4123 47256.4828 75925.2095 94320.8805 48874.6226 48874.6226 38842.4065 51284.5484 38530.9471 111713.3441 45271.735 50269.3105 27749.124 23503.1784 55225.9385 28007.0407 94641.23 49935.7789 60240.8207 23133.7508 29491.1161 31801.7524 22996.7894 65578.3639 392304718 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 22456.2326 440522.5595 6556.6732 9831.139 5840.2065 8989.1183 4239.3835 9096.7236 3588.7007 105822.9884 7640.8694 5623.9688 6640.3468 6640.3468 13904.1581 13088.7123 6323.5633 41709.4359 7669.5283 17202.9874 6249.9935 5468.8173 11789.0587 5061.1264 21294.3869 17713.8376 14912.6364 4060.8078 10502.6381 6631.8837 4399.4499 6443.5794 62084130 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 104038.0561 17404.7543 24117.4456 57885.8317 20402.9732 38955.95 34081.1095 27104.9231 36871.4417 53781.2543 90240.0927 1199642.1631 45954.6435 77813.805 60556.5541 35958.2598 35958.2598 42763.541 63373.7617 35848.055 31623.5052 55339.6958 62536.7302 37951.8394 32199.4891 53438.689 33370.2769 86054.5971 63969.5669 71660.6027 54264.9267 39319.8335 68253.6973 171711.4092 40387.2643 219680360 badh Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8412.9949 44325.4008 34227.8098 4744.8819 21298.3687 7566.7927 4299.3752 17763.3988 17488.6873 6086.6476 32916.7395 9349.3577 110720.9139 8888.0651 7321.3553 17375.4521 9338.7344 9338.7344 7929.885 8478.3291 4547.0017 28866.1874 7053.4023 2878.1884 4600.9223 13922.6971 4263.6101 45155.0151 19843.4331 12244.5054 8010.1066 9051.6813 7180.2055 5382.854 11325.5531 321166448 amyA Carbon Cycling Carbon degradation Starch Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 15855.8469 19347.4501 12680.2171 9271.9484 10750.6938 92211.4975 12007.2298 14496.558 20443.2131 9010.7505 255328.0475 20125.7521 17766.9543 14191.3958 7010.9712 7010.9712 11072.6347 22752.3595 20470.9066 12562.5322 40336.7885 29507.6278 11139.6842 12930.9917 23695.6659 13486.4711 34389.5492 25663.6654 22875.4686 7932.6939 16336.588 13195.8273 10033.9047 27725.0131 227289850 amyA Carbon Cycling Carbon degradation Starch Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 7825.3485 2760.4615 3212.4896 5799.785 4028.3026 6034.9017 2822.3838 5453.3972 6468.7049 7307.9944 2865.465 7653.0137 165882048 protease_serine_fungi Carbon Cycling Carbon degradation protein Thermoascus aurantiacus var. levisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus;species:Thermoascus aurantiacus; 3907.2423 9157.2769 4857.8037 5101.2027 4915.6474 3187.282 72493.7481 5315.49 4510.7469 3345.8836 3345.8836 3387.7988 7571.9178 6411.9791 4513.0356 5491.9926 6730.4243 1960.467 3084.2226 7343.2439 2825.5951 13578.4461 6935.3826 2802.9005 2678.7841 4478.715 2830.4155 5584.5503 296927891 urec Nitrogen Ammonification NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 12977.7986 17326.8045 8124.9832 15716.2689 19398.8726 10550.317 21306.5906 23606.8088 4640.948 8826.4075 14301.4609 1631916.8503 9251.612 28328.4415 17849.9946 11015.6356 11015.6356 4593.7963 30268.744 14353.5959 30422.7688 11838.3263 13097.8316 11717.9216 12188.6363 12433.979 22121.3797 46714.0227 15742.8336 29190.165 13681.7939 15317.4971 18061.7247 21905.4884 7019.6557 73748096 arsc Metal Homeostasis Arsenic Detoxification Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8979.4584 2127.1734 2565.5567 4374.4718 6754.324 3934.6716 79078.4598 3640.0793 7173.1404 3764.6904 2292.6519 2292.6519 3664.5291 6961.6601 4912.6014 6394.5661 26457.6164 6595.4981 2621.6089 2816.5192 6385.7819 3112.6949 12102.0507 3864.707 4804.6905 2665.7206 4400.1298 5201.9824 4485.3762 7307.6341 7381242 soxY Sulfur Sulfur Oxidation NA Starkeya novella superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya; 7194.5141 6751.3919 4356.1956 2927.2755 78782.4937 6457.7525 5846.6693 2549.6267 2549.6267 3331.4523 6916.3477 4230.2033 3647.6727 3165.6513 2474.4803 10191.7551 8409.707 10146.9163 2165.0477 3527.171 3258.8897 374413675 dsra Sulfur sulfite reduction NA uncultured prokaryote 5553.4321 9925.4149 2560.6711 3947.6687 3403.582 7262.9771 9755.2903 62105.3122 6627.8136 15066.2323 4761.345 3692.9288 7273.3762 6915.1812 6022.882 7396.0529 8885.329 5546.4473 4277.8279 12896.0244 8718.3894 5618.2689 3987.4935 4530.126 4438.4495 114196761 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 14953.2417 14442.5874 42991.0366 20843.7669 10032.8141 11519.966 2448.964 6739.9882 18548.1703 5847.768 329820.0388 14573.3831 18688.5984 26845.5572 16036.8864 16036.8864 7343.0884 12019.6112 12963.8106 6677.5215 188552.861 14887.0004 5138.4407 9848.6989 32548.4949 5392.418 24112.9959 20294.5513 23945.814 8848.7455 11720.2873 9985.718 4390.1387 8284.3315 239516726 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridiales bacterium 1_7_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 7366.5337 5590.764 6097.023 5621.8318 3035.7178 7634.2048 8228.1436 7670.7431 20770.7129 183767.6329 8679.6361 7142.8802 5567.0977 6402.5993 6402.5993 6410.9312 11345.1 9085.3701 8969.2397 10338.5835 10529.0014 3884.3939 5839.6722 13265.5962 5294.2959 18258.7761 9919.534 11872.4951 7735.4722 5680.6057 11115.3805 6968.3311 12399.1644 294786454 pula Carbon Cycling Carbon degradation Starch Parascardovia denticolens F0305 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 54813.3107 34383.1349 50784.9143 62914.6755 22873.3415 10994.5511 70771.4452 51300.3367 41955.7016 43699.9406 66217.237 35881.654 1034336.4328 55125.6909 90878.6832 78057.9531 45204.8831 45204.8831 34966.836 82429.0414 45978.0149 452364.5551 139877.3721 103969.8138 22813.0014 35262.742 54986.8162 58762.4977 185252.5254 57640.5688 68946.2808 29417.8594 35861.0006 39792.5584 35335.0946 70419.8876 45272475 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12958.1683 17087.5894 6936.7231 35929.4607 66077.7216 6397.7863 5892.3634 8638.3474 14841.9006 204058.0858 10498.9888 15396.17 10050.2605 6768.89 6768.89 6878.0829 19785.5165 8833.8787 16339.1683 15952.8574 18300.6024 4265.4102 101635.0971 16488.9987 11264.194 26287.3041 20101.8132 175231.9638 7505.9904 62354.574 11781.7102 5400.897 17552.0327 121534441 dsrB Sulfur sulfite reduction NA Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 3981.6587 4072.1602 9347.507 2312.6898 48254.625 64727.0762 5601.3804 10532.3352 36562.7132 12724.1196 6186.1145 22639.2998 9699.4745 9699.4745 4767.727 25147.2549 4485.9779 9510.0478 19222.8933 4419.2085 11835.7025 5929.0246 16728.3382 4776.9172 13650.4654 8968.1456 13221.352 5441.027 7535.1219 8001.6322 7656.3343 16894.1879 388587252 arsc Metal Homeostasis Arsenic Detoxification Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 21355.0998 5210.0667 2394.9213 9123.863 4726.0737 5526.7018 3513.1273 148802.9638 6032.8989 21185.4624 3718.549 3718.549 5118.8774 11147.479 7782.7605 4196.4392 7645.8655 6778.9209 2984.1581 3525.4981 9013.1385 2909.3731 12716.8327 9574.9525 14317.5933 2528.3316 4123.1704 4518.4662 2429.577 347816720 gdh Nitrogen Ammonification NA Candidatus Glomeribacter gigasporarum BEG34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 286513.7437 189617.5011 137668.0341 164405.6252 51386.7745 150398.2099 139708.3791 638552.6415 225242.8615 221102.4685 200593.86 161019.4749 2974467.8056 275631.9546 213842.9856 356618.9096 232101.0076 232101.0076 314048.8005 234042.0433 193470.3625 232191.5915 645916.0537 247674.6753 113825.8677 150354.7728 179901.1795 176468.7763 482447.5696 185941.5054 186457.8147 123412.2072 177356.5073 212571.6202 152527.6739 355554.8754 227342469 cellobiase Carbon Cycling Carbon degradation Cellulose Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 7183.2889 11158.1465 4978.4513 2743.7452 9178.9141 5698.8124 7505.5081 2621.3061 192820.9395 12422.1941 5420.3985 3718.7895 3718.7895 4164.1985 11006.9711 8121.458 6493.3181 9950.6395 8790.2012 4169.8709 4113.5615 8801.6192 3551.8486 23216.2735 7886.2596 11446.2287 3204.7003 5113.2366 6186.3638 3063.8746 11440.5755 189423978 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 4686.0445 254475785 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4522.9384 16652.4867 20391.696 8139.0513 4731.2834 5502.2845 8009.1451 4240.7883 3274.1951 6526.0818 26902.259 6525.4695 5798.9203 5798.9203 4587.4825 11787.1918 29188.8851 7249.9473 2959.4473 3558.576 14262.9382 2917.6037 17344.3092 13964.9133 18951.6891 5746.219 6507.7024 5307.3608 4203.3011 10175887 amyx Carbon Cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 16890.3394 116571.5761 11061.6703 17140.2167 4332.6079 17409.4268 18435.3417 6309.7782 16231.7613 57205.0989 1040764.4072 146793.6899 105072.4702 87535.709 35413.9452 35413.9452 10142.8416 18112.3328 9653.9702 27342.3611 37344.0077 25842.0192 7394.0922 12832.3489 15006.5859 6795.1095 13869.4216 53568.3569 15483.2968 7732.4627 5984.0737 14893.0021 8779.3726 17306.4779 373479042 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 22686.3794 142674.1751 11320.7379 23050.4152 7021.1457 4757.9653 5722.163 3888.1369 7218.6175 7248.9204 4851.8981 146701.1699 16751.9383 12267.6658 9351.0424 8608.9197 8608.9197 6543.8587 16583.7751 10340.7176 7268.0635 7781.2977 16762.0784 6042.1635 8919.4832 26788.5304 8488.6924 23157.3028 17482.3021 30177.1534 5389.6536 6670.3505 7996.2909 5279.6066 10407.8795 46110130 nitrate_reductase Nitrogen N Assimilation NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9938.2005 6118.6324 12740.1974 6888.7385 6552.7913 9732.0727 3851.6303 7635.6452 6282.0851 393414.2981 7750.0257 6607.7188 13567.6959 10356.7113 10356.7113 4074.4591 62202.6253 6670.8725 6992.1049 11419.0827 15655.8297 3941.0143 4024.0382 8965.0837 10098.9833 45459.6177 7225.9296 8217.0226 9297.2779 7039.9018 7193.8613 6569.7482 5215.1665 222148431 terc Metal Homeostasis Tellurium Detoxification Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 219804.262 26460.3069 545106.506 1403856.4819 414510.1694 44141.8698 146052.8203 183271.1083 94916.8786 182356.7688 241187.1149 131611.3087 1512589.3616 389537.4435 195904.6231 332416.9878 217283.7525 217283.7525 227459.1009 181186.0251 95123.802 258589.5073 278179.9114 171469.255 97036.6216 97259.744 139898.4253 182168.5154 420067.8319 308701.7235 161466.1318 117049.0513 139232.7486 166818.037 122198.9317 189506.6337 83573557 amyA Carbon Cycling Carbon degradation Starch Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 16569.2983 30525.0515 58975.1471 7413.8955 44385.2726 5952.3983 11648.3452 28418.4697 3894.8731 11724.8498 16760.6504 17938.4028 400030.0787 15569.0586 16080.6167 46611.0345 11804.0159 11804.0159 7219.2849 22162.3008 10236.7292 19958.3297 12084.4104 7338.7353 5125.4184 7708.4591 22774.467 8042.748 29931.5615 18908.0076 29233.1215 8193.9326 15021.2863 11718.1793 3781.91 8626.8647 356879769 endoglucanase Carbon Cycling Carbon degradation Cellulose Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 5911.3274 396884.9101 2368.9466 9271.7778 9654.8643 3725.9604 114939.5201 5961.6174 16333.0985 2771.7165 2771.7165 3849.2962 8697.7043 8032.8778 11971.0611 9894.6148 4239.7267 3874.1008 4381.5271 7476.8247 2833.0317 11302.669 7970.6023 10010.8625 3053.2683 9185.6714 5486.7752 4234.2942 10017.3017 302663456 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 40956.3623 669160.0658 10431.056 12389.7886 9618.7375 33566.2941 30082.4129 22054.2254 391906.7921 26135.3194 51488.7303 47693.2977 27946.1717 20960.1364 181539.1789 22830.4957 16080.8245 39231.4079 12852.05755 22032.214 7948.4151 14979.1706 34030.2346 154148872 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 14838.934 4787.6044 9777.6829 21727.8412 9617.1078 13840.3465 5189.0661 8432.7705 21419.671 6925.543 297275.6844 32038.3097 15035.3312 10263.631 26845.9395 26845.9395 8772.3293 25697.6493 13980.9436 43885.8267 9150.2596 12360.7869 6715.9032 11628.5327 20012.5708 6834.2778 30758.8884 19640.4137 23868.7436 13198.3571 8783.5645 14868.9407 7251.7631 13349.3024 302413403 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 23206.8978 14897.0171 2767.9462 26803.7026 2934.0835 5588.6745 7357.3343 8544.5008 234042.3689 3566.8724 27858.7211 4302.0473 4154.8335 4154.8335 8449.8459 12164.367 10939.8098 20658.0657 5320.0224 14178.1171 26033.418 21272.9272 8288.142 4694.1337 15161.1217 10135.6069 13475.7631 2451.0214 23246.5944 8579.1896 4032.8803 8099.1558 260613556 ppx Phosphorus Polyphosphate degradation NA Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 6649.2572 7942.1832 5086.3656 3961.117 2276.0703 196050.3297 5952.0408 3613.6341 4199.3891 4199.3891 9050.7643 5630.6304 4142.6189 9381.3859 4113.5778 4021.8312 2645.2908 5534.2023 2468.487 10856.2641 4293.0438 6571.4721 1838.9912 9403.3116 5077.4528 3222.4777 299068532 dehh Organic Remediation Chlorinated solvents NA Ralstonia solanacearum CMR15 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4516.1416 7422.9967 3714.5535 8000.8367 10930.1385 9786.9513 6206.2135 8391.7224 6264.1576 484391.7104 3699.761 6115.6444 4778.1953 7107.9621 7107.9621 13565.8164 7239.161 3968.9451 4275.3447 3637.5276 27971.2978 15031.0496 3205.4217 309754.0046 10768.201 10380.1863 2504.1377 4385.3329 33772.8136 5730.2405 376401100 pcag Organic Remediation Aromatics Other aromatics Klebsiella oxytoca 10-5250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 4158.256 28570.9643 10661.5087 7458.4503 2167.9353 3815.833 61167.9835 3897.1029 4595.8349 3299.2986 3299.2986 4180.5303 9874.3499 6635.075 4831.6595 5954.4046 2788.1625 146339296 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22197.2076 8771.8482 25159.9488 23125.3408 8680.7657 7771.5626 35596.1951 9077.701 16880.0254 21953.9957 11499.2862 346032.4629 21156.9303 40178.9779 21288.7271 15231.5945 15231.5945 19223.5958 29976.9722 10118.8994 22197.2757 40235.4693 10710.5631 7276.7864 21427.0849 29955.2039 7830.6955 33638.7013 13586.3196 23840.9333 9551.4235 38826.7807 34896.8673 5945.8684 13431.6729 254444558 xyla Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 42697.5174 24301.2772 6218.4907 79333.4392 32832.5063 59551.3483 4421.4276 35647.2822 10528.1736 21625.2997 11389.5662 297585533 amyA Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 8123.8352 2106.0902 4435.0427 3767.3832 4629.0688 3716.0143 4041.628 131632.4556 3699.0197 4855.7028 2179.4568 2179.4568 3590.1777 7370.9462 7371.9225 6663.5354 3338.5733 5880.9136 2065.7307 10816.2544 9573.1866 67116.9552 2478.9231 5060.3769 19930.3024 13794.4614 118571390 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 4729.0124 5600.3843 5876.0592 4271.115 4074.4506 6223.8717 54845.0861 119721.7377 7726.3676 37058.7824 6620.3788 6620.3788 3279.5675 8495.4518 7430.2371 4814.2973 7579.0721 15188.4887 3176.9458 16153.9089 8766.1398 3200.5527 22484.4046 6992.9108 10154.7133 2907.7951 5117.252 4883.9756 4108.5738 9385.3976 292834803 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6666.5794 7666.0654 5670.3373 6909.5926 7868.9598 2376.4226 4905.3297 2061.297 20129.0971 6977.2714 3167.6592 90856.1578 5336.2324 12757.7396 7420.9216 3713.2585 3713.2585 4918.198 8225.1447 5370.4116 7554.0309 9265.9347 6301.8629 3772.136 3767.4653 12729.1872 2790.1238 15261.1963 8137.1494 9278.6208 5098.108 8371.5125 4577.6055 3888.4522 6329.656 374413748 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5883.8676 9093.5925 5044.1577 2824.1644 4635.1556 6214.9451 35205.5565 142813.3057 7019.6359 5336.3137 3866.5496 3866.5496 3719.4471 5909.999 7928.1614 3838.7478 4846.1589 5400.5389 3749.7055 5494.4381 3427.0499 9477.8945 4802.0044 9388.9612 3678.262 8755.0576 3831.5319 4068.7352 16047.469 311743816 merb Metal Homeostasis Mercury Detoxification Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 15686.2904 6555.0156 7117.8207 9273.6541 5172.4813 10480.3407 84291.3894 4026.2348 12893.9102 11378.9282 10284.5856 10284.5856 3411.0269 9811.4731 7874.0702 4695.8574 34455.3826 12443.8503 5425.9324 6708.3435 10007.3821 5690.3517 15099.998 9407.089 18392.1618 4561.6303 5117.4131 8855.2983 2987.2228 124257903 tutfdg Organic Remediation Aromatics BTEX and related aromatics Desulfobacterium cetonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 4733.982 345905.9983 5571.6218 26305.2614 10289.5167 3298.2238 1746.8926 120401664 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 19277.9587 19631.1353 4641.4379 9830.2775 6509.1898 86412.9698 15393.6632 136106.596 11733.7048 15678.4925 14444.6294 4733.0833 4733.0833 5628.0991 12968.5377 8230.2324 10481.6439 10624.2889 12452.8469 9941.5585 3828.0539 21648.1197 28627.8886 23847.6131 14316.9442 10687.3861 10028.717 6389.8403 10865.92 120848.8287 13588.0603 336177837 amyA Carbon Cycling Carbon degradation Starch Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 27909.1394 19359.8865 4368.1603 8620.7943 11701.5503 7082.0322 3745.583 10165.6392 15910.542 18498.6699 82310.6397 6207.2408 28733.9897 9423.0267 8686.1661 8686.1661 5713.5683 11544.1182 10532.8759 9394.4718 29941.5242 5383.8579 5529.1495 10026.2196 10080.4604 16149.8138 36694.5397 6775.6269 14534.7635 5035.3983 17785.3211 10798.8509 16567.5891 6802.5944 192897590 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 5574.5134 5899.8778 12622.4753 5580.2234 4140.7069 5220.6156 5203.1568 2852.7056 109295.6981 48670.9066 5897.2982 4200.9668 4311.6304 4311.6304 6920.4423 13016.02 7433.1227 4906.4893 5009.3683 6087.2933 7407.1183 5558.6314 10818.6505 2654.4814 224167.9087 7692.0188 10729.2667 3361.754 5917.1185 7338.5168 2653.6603 7784.0517 158304027 arsc Metal Homeostasis Arsenic Detoxification Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 9306.1255 4844.4763 15684.3499 8520.2552 4603.483 4005.5288 5954.2465 7468.8707 2881.0781 149262.5639 6332.3421 7228.6871 4280.0169 3567.1517 3567.1517 5755.2201 14627.7434 11853.5502 28265.674 10987.7202 12979.2185 4433.212 3762.9581 9168.7256 7378.8778 15824.7101 7443.9234 5125.972 5190.2568 6636.6119 4518.5889 11756.0513 116222591 arsc Metal Homeostasis Arsenic Detoxification Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4834.8146 112098.9282 262282354 amyA Carbon Cycling Carbon degradation Starch Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 3736.1536 70739.5541 4024.6521 5017.8878 4916.9627 1857.8586 2963.4936 315415686 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8322.0314 15102.814 7895.9746 26568.7725 2789.46 14944.0397 5401.5724 8258.4644 4571.6105 107253.1686 5631.1259 7927.0037 13765.8676 10611.0541 10611.0541 3611.8068 11410.4444 6493.5819 4974.1075 10723.6174 11612.5612 2591.2388 4443.6843 11818.886 7854.3752 18604.0793 16037.3754 17770.9985 4218.995 8225.9822 6391.9812 4090.5483 6166.831 332662238 amyA Carbon Cycling Carbon degradation Starch Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 38161.2666 22908.2252 10141.6695 5133.235 5318.7779 7474.5624 2991.0676 5766.5393 10943.9856 5299.5198 169648.4328 8401.3267 5499.4007 8879.1292 5355.7201 5355.7201 6639.1358 12556.6405 8751.927 10685.9015 8218.0718 10817.6708 3665.3818 4763.2188 10707.2548 6561.0667 17376.9601 10870.955 10050.6307 10575.4373 9160.0482 9046.8075 7383.3769 10647.4371 145693266 mmox Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4075.4928 4391.583 3995.5406 48237.6905 3810.0331 85759.3535 3852.9006 411335.3497 3429.6385 3429.6385 8234.3007 4674.1331 20110.068 3991.156 2498.9612 7979.5178 8035.6817 12079.3693 108308.2045 8840.6765 8668.2047 21394.0912 5948.8819 3945.2244 2414.028 209401878 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7872.2858 4425.2181 3893.0217 2579.7225 5702.1197 4706.6294 4769.1073 127067.9923 7450.9919 4399.967 3116.4388 3116.4388 3847.2014 7333.635 5429.017 8234.0112 13134.921 7186.3164 3313.6824 5813.0461 3677.5574 13018.6063 9900.918 14892.0119 3681.4459 6817.826 4035.7189 8627.1299 350532587 amyA Carbon Cycling Carbon degradation Starch Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 26920.9378 33040.0072 6357.6735 8880.2664 4420.1718 14847.6461 24396.7317 7813.3928 176056.202 4643.7346 8805.2202 8805.2202 6265.0854 11191.0839 13622.2057 6250.7337 13168.2077 5016.7196 2285.1541 4079.5816 11068.0762 7939.7362 1029212.9836 5455.1375 9373.5814 5597.2305 5381.5323 355148.1183 2066.5695 4574.3271 333607982 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3950.9548 2680.2753 3120.8886 1872.9577 1872.9577 5940.9884 4589.8602 3554.6784 349785348 cda Carbon Cycling Carbon degradation Starch Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 7625.3348 13655.3119 10093.8064 8313.805 7170.2499 12767.1816 9582.399 91864.8051 5685.8282 5492.4294 8366.272 6754.8556 6754.8556 5316.0497 11575.4328 5956.9473 7496.1432 6343.2674 3693.4288 4897.1593 11084.5827 3906.7761 57580.567 8693.9967 8490.2456 5156.8995 5078.0687 5087.4281 4564.7206 57017.1294 78513590 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5594.8509 12602.6446 3671.2042 6911.2526 7824.2462 4158.6977 25927.6123 5161.7347 7756.244 8434.1988 5602.5503 5602.5503 5565.1513 20433.3794 7111.0154 10514.0327 11601.4729 4948.4866 26995.9041 8798.3819 4024.4199 172991.0751 7995.5468 12655.9913 12130.2496 7485.9587 5450.3131 7278.6978 7129.1299 381151185 cysJ Sulfur Reduction NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 11363.5315 5393.2977 7920.9654 14715.8558 76485.7783 32434.596 11975.3827 17193.223 7570.2714 6524.011 178699.126 8355.5999 14015.2601 7367.7295 14282.749 14282.749 7718.4299 29412.8612 11066.7615 9255.0231 9814.602 16351.3938 7066.8522 9411.1236 10028.307 17327.5994 25239.1284 12535.0946 16202.7997 8348.8531 12695.6887 9606.1701 7585.3738 12108.8154 189189022 pel_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6175.0376 4362.6718 4695.2678 4922.3208 2903.8288 5020.0435 4081.0286 2748.6701 168271.1697 5895.5427 3651.2527 11796.4852 3094.4734 3094.4734 4102.8484 8361.0509 6136.5671 6787.3498 6067.4312 7258.5277 3585.9105 2562.8852 7316.0801 3393.543 15394.4956 6033.8907 7501.9448 3884.5933 4655.7841 5110.7273 3226.7163 9552.2087 197116488 phenol_oxidase Carbon Cycling Carbon degradation Lignin Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 17855.5213 235364.5468 13759.6678 35751.4258 5136.8207 7442.5726 13411.3636 3497.5416 10580.5958 34918.7002 13641.1432 179992.9867 15919.6645 13102.5158 15269.7667 15268.1041 15268.1041 18257.4487 42741.6363 13594.1899 22618.3635 9820.2797 15037.4235 11735.7296 11277.8173 23929.528 15646.1073 32479.8575 23329.5595 21720.9905 6170.3613 11516.2051 16685.7384 11872.591 8673.1607 169849722 Sir Sulfur sulfite reduction NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 31331.3569 10065.3064 29079.1912 2931.0434 3237.8072 3834.1721 28059.6994 19915.4614 721276.6623 14087.5811 17652.6593 19584.1008 3772.6355 3772.6355 5102.7688 14984.3845 4784.9713 5792.5503 8624.6684 7523.4784 2493.4883 4280.372 12892.1964 9623.5746 18150.3707 9306.9756 19461.1475 4415.3534 5832.213 18543.3684 3720.7305 12516.8008 375307526 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7030.5971 5771.0003 3321.2327 4028.3701 2947.5481 5193.89 8522.1599 3647.3661 111503.8194 6434.1407 5974.3524 2746.5204 2746.5204 4951.4573 9109.8474 6793.7995 6578.6105 9142.9483 9917.6342 5733.2788 5099.0945 8966.0727 3501.3897 14253.6125 8164.2373 3388.7953 4637.3819 6857.3525 3854.0943 7543.7895 289523716 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 4825.4576 11685.4562 8974.1178 3858.8012 2885.763 2303.5163 4876.1222 3885.0689 74469.7989 4706.0935 4343.6442 2152.3338 2152.3338 2840.2914 7332.6592 4007.8766 5418.5384 5805.7584 2597.0797 2839.2603 7029.2243 2148.4452 9164.6424 4317.6086 6721.8841 2701.1286 3871.7302 3555.0434 3072.7927 8474.0127 392844261 badh Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9104.1169 5264.9799 3668.5708 4820.3061 5214.2307 5312.2062 2886.6892 114466.8346 6925.966 8039.0119 2894.1903 2894.1903 4400.0961 13871.7325 7895.729 4410.7905 8742.1794 7652.2349 4360.3194 4530.0303 10492.4784 5813.5953 24098.6507 9976.8204 12269.2981 6924.6976 5982.4698 6931.9752 3669.6904 13904.3476 209957260 napa Nitrogen Dissimilatory N reduction NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 6551.5083 11273.0198 13361.8281 6965.6279 11349.9669 3751.5599 3190.567 4944.2428 3081.3779 6772.8708 5615.3987 5224.3586 5728.6394 2555.616 2555.616 3491.3342 11889.5447 16549.456 4350.8972 6449.4403 1022725.9484 2685.9682 2672.9182 8957.5615 2399.3293 10948.4139 5703.5208 8303.7422 4216.8034 4183.9484 3152.0679 3105.6224 5190.673 347004709 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 23877.1143 10148.9696 58008.6824 5739.5934 4457.3491 6231.258 2094.766 12520.5031 12471.9522 21938.4435 115210.5643 10159.6318 24591.9452 27316.4898 13181.2173 13181.2173 10288.0846 29617.5756 12506.7555 8698.6587 12759.5331 9830.1681 14957.7189 17132.7419 25225.0434 6652.0896 25195.7658 12090.1367 33831.9536 7243.1061 13747.6678 9036.2623 3199.5923 172768.7839 28629803 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4144.2147 5529.6254 11459.3601 5308.8222 20651.3392 3696.6221 9126.9078 4208.4914 54498.6859 6732.497 14169.0899 4178.4778 4372.7156 4372.7156 6899.5468 6971.2275 6594.9691 7097.0348 5726.6966 5227.4627 3493.5036 3957.8158 6612.4668 2657.0884 18258.4202 9143.4058 13782.857 4560.1196 5953.4455 4911.4762 6456.0193 302471878 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7100.6623 29067.408 8425.3467 6666.2194 6099.7489 4143.4628 6510.0327 7133.3735 6229.8719 117401.976 11042.7906 6306.4869 4923.1612 11899.1305 11899.1305 5394.7016 16629.0512 8293.1712 5113.1427 8401.907 6952.9051 3967.4668 5419.3534 14765.6762 4869.2807 16667.4728 14387.3289 14442.3643 4344.2717 6255.5675 6475.3018 4015.6113 6951.5299 335878882 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 6865.3723 5770.5314 4643.2468 11091.0646 5353.164 4312.0647 6069.5619 10779.2305 7716.688 6193.4233 5901.772 178827.8062 9814.7431 14688.3425 5239.9062 14816.2747 14816.2747 4226.9499 17705.9238 6993.0736 9550.6747 35672.4945 8420.8847 4410.1638 5410.3901 8982.1366 5128.3167 18913.391 7569.7812 9693.3365 5005.7051 7826.5773 23350.542 6291.279 42088.9851 325108179 dehh109 Organic Remediation Chlorinated solvents NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 12284.6888 11878.2241 9608.2737 11668.2909 5251.7975 8258.8272 5939.6025 11275.2301 10542.8263 5887.1843 144779.5502 18600.1929 10230.4707 9165.6723 7107.8495 7107.8495 7697.6301 21777.2804 14828.8502 8958.4841 23622.6904 21533.7523 5398.8483 10180.7453 17367.3572 6443.083 32482.5089 12435.1624 18907.5056 8391.4365 11979.5334 9102.7311 6639.0166 48343.7741 312112807 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 3938.0616 9668.0403 7251.7536 51619.7654 3989.0314 2530.7723 4220.8207 8164.6048 57238.4363 17776.418 17696.2659 7603.5514 2512.5743 2512.5743 10520.4637 20935.0031 6060.8402 8648.9519 10047.0996 5062.4234 5323.3912 9682.6504 15667.5267 5631.5154 14350.8788 8127.7831 7872.3645 4348.2386 6996.5034 3813.83 3349.8595 298728121 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 13088.4623 6638.9089 5749.2685 11345.4271 9657.0914 8863.2962 5180.3825 9452.9491 13407.2304 4777.5299 166700.9573 11023.2568 17889.2162 5126.0723 4403.9998 4403.9998 5990.0236 11528.4586 79477.1248 5829.6098 11845.6667 6207.7939 3953.6981 5695.3322 9497.4965 5619.9167 16672.1441 7860.3626 11838.5324 6759.8622 7526.9917 6951.5012 6321.2619 9666.7096 197621282 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 14458.2834 5388.2688 6798.9673 8523.2874 5138.9708 11629.4607 11998.5691 6247.3863 10350.4882 12831.8615 13958.3706 225553.6209 16462.7569 12816.4938 10887.4526 8274.0965 8274.0965 14611.3006 20489.8376 23554.742 11041.2375 18443.9663 11204.5204 7741.2429 7654.9246 20301.4203 9619.3605 37887.4641 19269.5085 17676.3451 6707.7846 10436.2643 13018.6511 23314.941 18293.5093 322421194 mer Metal Homeostasis Mercury Detoxification Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 94937.1349 31071.96 68864.6659 527490.5774 193591.4669 21930.5086 36809.4845 147654.9311 57642.3254 71290.6147 44972.9111 87085.5194 1131246.6078 82560.8091 67007.1517 109557.8751 78420.1786 78420.1786 47364.0276 117099.9303 30394.4548 92288.2542 73977.3375 64188.1861 73016.0171 138396.3712 73849.1999 37097.357 115087.3797 48187.1611 194710.1603 26578.1688 51632.6467 66538.184 38259.5348 156822.4272 119671145 toma Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 82685.5447 52337.2875 94483.9799 126605.3843 112453.4624 202344.9586 219126.8872 371450.658 52788.926 56002.551 82070.0851 56484.5656 1460374.9626 72145.9112 79885.6824 155282.7985 155774.7324 155774.7324 39839.9347 82729.3028 50978.6788 179506.231 87184.926 86937.8205 29172.1897 24816.3271 82722.9591 35545.2784 131987.4657 52243.3388 286322.1371 62488.4916 56533.6654 55494.0052 37813.9205 95013.3118 295800249 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 10753.4151 11611.8033 6622.9606 162321.9361 8026.4469 6255.7687 18966.9757 14499.036 8085.0944 154321.8944 181721.9316 7703.3442 8880.1321 15706.3322 15706.3322 9775.664 23358.8586 38481.9864 14216.6044 12783.7432 13862.2728 6272.7517 9874.7861 19947.1813 6932.6277 18246.2368 14990.4574 70787.3773 5272.094 8837.1873 16141.6869 4894.8352 17934.1437 229473039 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 38229.3989 14410.2748 57798.0558 32556.3332 6809.7729 42515.852 18109.4126 30121.0457 38059.5174 29879.3635 18222.1213 423253.2188 20394.2901 26198.5418 31113.9561 21805.9841 21805.9841 118762.4239 39077.1101 24974.7694 75494.4854 1028130.6514 36133.1197 36288.0465 28101.739 28770.5162 40303.0405 256240.6536 26314.4571 30860.2157 38099.3447 26031.0789 25924.832 23302.5026 28629.5113 295689301 mer Metal Homeostasis Mercury Detoxification Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 6598.7754 1222504.5448 5753.7345 6418.7472 3170.8735 2611.3515 5632.5512 5588.9752 14416.3235 287323.102 11232.3608 14261.4028 9599.0251 38295.8847 38295.8847 87732.7091 36226.421 8502.659 9713.6965 37206.0273 7354.9622 13590.4362 14714.509 8236.2606 21077.0142 7136.5858 8167.669 4615.9996 3733.5865 10121.7905 3696.1524 11681.5151 259456554 FBPase Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 19970.7587 53730.2124 6668.7612 2388.4173 162055.3247 9963.8656 10009.7262 10843.5908 35085.6524 133764.495 35818.9789 12581.6648 24897.3854 10002.0244 10002.0244 31353.8199 19384.9763 10894.3058 67366.2537 21130.2542 56636.0258 21705.185 11781.259 13371.2531 10401.3408 38674.6321 17102.4843 12518.7682 5283.6484 13047.5359 13052.6105 11670.4787 21977.2522 400229803 thl Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans CF2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 14029.504 24042.178 27597.6144 4847.6574 47391.5138 13414.6265 51778.6171 13461.5448 8004.7876 12841.6857 2408.3814 16773.2728 11935.447 8998.5593 8790.1927 8790.1927 6832.7608 14506.7278 6930.6841 135433.2681 12631.1286 76555.4442 21814.5796 12078.0821 20123.5888 8639.8085 30563.6024 19378.3583 12079.9743 5394.5607 9776.8312 13932.6073 10718.412 22317.9799 238712875 cysJ Sulfur Reduction NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 35288.0057 9365.4643 12949.5966 8593.4971 10424.0408 14043.7159 34144.2041 11450.9818 18023.7497 26419.3458 74152.0843 432184.8837 28407.2777 25505.6702 26630.2477 234951.5037 234951.5037 10115.1256 39444.4995 30454.5753 23458.8311 91483.0993 107692.6484 6654.2844 12995.6299 45597.4893 59299.8431 47575.6636 50969.6102 77675.1044 112603.7196 15611.4265 28883.8308 15959.1491 19747.9989 119505476 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 53853.8602 11188.2419 30663.9996 102723.0989 73425.2225 27657.5948 28927.8442 165071.8341 30487.759 32243.1402 42588.8781 23005.8145 812704.5847 52564.9756 98175.2221 279193.521 49988.2229 49988.2229 33301.7196 48393.8703 45186.6778 223045.2516 63579.0233 50130.9357 20450.1817 29292.3256 45435.8741 18754.8026 83596.2296 42274.1811 59591.7518 80807.5967 38525.2837 29262.2023 18324.5839 70510.3745 60476014 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5106.8292 17011.1736 6777.432 7952.3109 3547.1251 3223.0489 3653.2881 2377.4054 72142.0037 4211.0716 4779.1358 7587.6783 7587.6783 5652.006 4111.4975 5577.2143 4333.0177 5210.9254 10650.3823 6353.667 7432.7143 3464.6849 5205.6266 3979.6093 3272.5614 237858247 GAPDH_Parabasalia Other Phylogenetic NA Macrotrichomonas sp. GsMG9 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 39249.1267 18447.1117 32196.2937 64867.6623 33107.1397 12939.2816 29935.9708 133494.5249 20586.7667 31384.6949 38704.4957 18247.0801 934324.2493 47500.6628 33002.4253 46153.0662 171239.5885 171239.5885 209213.249 96232.7875 36424.7051 32517.3524 40498.8984 46123.3613 17489.3342 20989.3578 36589.6098 14694.0425 72623.2382 41212.9075 49575.0929 37256.2666 26089.0564 26182.139 22070.482 49804.6351 405981706 nfsa_2 Organic Remediation Aromatics Nitoaromatics Actinomyces neuii BVS029A5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces neuii; 6083.2447 17437.86 7047.741 4257.9187 2797.2582 3784.6936 4153.948 4909.4007 3488.9391 169952.6016 7873.289 7014.2694 7920.0238 13781.611 13781.611 5348.1862 55900.3625 6053.702 918927.0557 19929.6049 5866.3167 2791.8813 2942.3171 8685.8043 10868.2961 4392.0944 8007.9206 5407.9131 2596.3886 7034.5087 7452.1671 11086.1377 283808543 chitinase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 12182.3723 9559.7359 3307.4742 3727.4631 4545.6165 76970.7416 4356.0613 7208.4116 6799.2501 6799.2501 5508.7359 4929.3792 5865.0088 6104.5122 3917.4454 2780.0633 2884.2392 2287.986 9859.1519 6544.9001 7395.5168 4017.3525 7090.9304 4886552 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 174418.3192 42681.2397 102657.43535 316497.5277 91620.8623 62598.92 102058.7473 105778.53225 131792.97655 88239.35735 203820.51515 95171.56395 1402541.18275 95511.9443 179559.9675 139071.56315 107464.1763 107464.1763 130569.98505 100337.60725 65233.26815 89182.78115 287318.2614 640780.16075 87478.62395 60261.0983 111965.41615 66038.3559 199554.43545 100744.1081 103990.971 121033.6131 85657.7827 89626.85915 68098.56245 274440.6256 375132398 terc Metal Homeostasis Tellurium Detoxification Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8508.4365 143732.0115 25622.9398 63776.9066 6223.12 9614.1292 7132.5402 4731.0792 9463.0564 4640.6164 127576.8556 6704.0587 60151.2036 10575.5537 8613.489 8613.489 3195.0482 15170.1169 5603.8509 57673.6929 8575.7695 4111.0494 4544.5833 10623.2469 8903.7386 12668.1568 7913.4705 15458.3627 5452.933 6728.0755 4889.2939 4961.521 5674.2489 294884121 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA49_4W superkingdom:Bacteria; 18372.9111 5789.7155 11134.3658 6239.6857 14383.207 12791.892 3174.7103 11698.7924 49583.0017 14432.2407 188308.0644 18132.0083 15008.8247 15843.2698 6782.2654 6782.2654 62724.4679 36654.3434 63397.2563 11489.4693 723008.1198 16956.6136 8079.4444 14440.808 18982.0499 9545.6513 46965.0424 19078.7926 26264.4252 9252.9077 24712.8226 19127.5414 23782.6585 16615.9118 113897676 terc Metal Homeostasis Tellurium Detoxification Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 5219.1322 12592.3213 14241.1467 5168.511 8525.8122 6177.2378 3005.6339 10379.0572 12471.7661 4521.6997 102444.6946 7796.1663 8792.1403 6629.5181 3728.2163 3728.2163 5822.0099 10789.2082 16494.4457 6353.8909 6991.7277 4223.4024 6514.5181 13826.2399 3784.4009 17512.7788 9921.6346 13633.9194 5314.2726 9249.8398 5245.9371 3563.5435 9121.1165 166857739 sdsa Organic Remediation Others NA Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 70753.9417 14341.0228 54646.6831 41934.5354 32525.7556 13096.1473 37480.7031 46288.7766 43786.6925 46665.0018 49474.3664 42584.9455 1171647.3812 42009.0649 596031.3176 61214.3346 91860.1174 91860.1174 55309.5221 66103.8517 63165.1315 31366.4233 54099.3347 36715.0029 32571.1939 29274.3091 48720.3433 121294.1318 99716.1297 33957.2421 47780.0566 28505.4302 43727.9576 113669.7905 42984.6885 406257.8998 58615473 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 9415.1489 8072.2403 2317.0731 2317.0731 4518.4875 2903.5682 9667.546 12124.0201 5187.2884 9124.3374 1605.7181 2890.4024 2979.4722 403658393 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 4294.1163 8051.69105 6002.1219 3088.7362 1905.3157 19228.7238 93218.1839 5415.23285 3485.5688 4352.1511 3523.6323 3523.6323 3085.1149 17669.8743 4973.6077 4054.5989 5721.5048 2158.9639 2419.4591 7210.4035 2941.1576 5918.99095 3600.55 3872.7927 3451.31395 2138.3764 4378.4506 296117754 poba Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 24054.2199 11488.6793 7715.2841 21789.5013 11610.4023 19454.3709 15639.0959 70057.4821 108787.6552 348559.3033 20696.3646 36420.6114 12677.4966 14300.9335 14300.9335 32101.6648 27798.8859 18931.6007 49605.6911 26880.5045 15181.539 23443.5601 17089.5313 29670.5807 9549.1662 36255.1004 35178.1484 32444.1751 11490.9898 47000.0739 22797.9441 18304.1547 23501.9247 4704462 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. NCIMB12038 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 201330.9076 165109.9878 838547.6593 278393.1982 17410.6149 144816.4317 202830.1059 162361.8063 101648.6243 136833.4297 133621.2816 2430578.0488 310305.594 191064.9954 205402.4365 238796.7052 238796.7052 251270.6313 265373.6391 86127.1196 312707.6928 451148.6098 178526.3794 180458.1394 115290.3297 122907.7765 140622.7277 399165.0433 284359.2526 160404.7658 105727.1249 156213.1337 134390.9402 108032.417 321853.0202 60476284 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8590.2081 6810.083 10022.3336 19445.1984 270527.8424 11264.1734 4321.4745 8516.388 9089.5216 7972.2027 169368.4974 10614.4101 8844.2818 13195.5261 6992.5269 6992.5269 6336.1508 13866.9262 10708.435 9689.4995 8186.2777 10708.4492 5795.1149 5287.562 14379.5267 13495.1463 52026.5802 6937.9092 13316.0909 7202.5206 8469.8503 9032.8943 4861.7689 18396.0343 303257138 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Burkholderiales bacterium 1_1_47 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 9693.1755 14819.5259 9050.2916 13702.0869 8495.564 28534.2301 12376.8857 21153.8961 8862.1241 111694.9231 11026.7075 308845.5222 19969.5056 14419.512 24579.1411 22653.4204 22653.4204 8896.3452 17577.4586 11956.5175 11743.5508 29390.1437 7578.6757 7751.0588 31630.3991 31663.9184 11143.621 42638.0756 23807.2207 20288.4048 7830.2063 20105.3012 12787.443 9362.3904 289203.6435 364505589 hzsa Nitrogen Anammox NA anammox bacterium enrichment culture clone cc2B_139d superkingdom:Bacteria; 5925.5909 10006.699 3735.02 4567.2574 6567.0896 9135.5035 2777.4562 154087978 amyA Carbon Cycling Carbon degradation Starch Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 3935.7538 2288.5826 6211.8284 3238.0439 7682.0265 4764.0189 2967.3427 329575556 rgl Carbon Cycling Carbon degradation Pectin Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 18573.4552 26952.9711 16085.9883 29840.9311 9568.9705 23560.7821 16759.1766 19411.3102 35566.4802 25746.1623 29097.4313 442837.8329 59005.8769 54753.8882 27804.555 16023.0718 16023.0718 21851.434 50282.8892 28719.3464 23214.8495 78884.7725 30298.3262 57206.3211 35500.444 48490.8465 21811.7377 72958.4101 38300.6127 29311.9783 13147.5336 19303.2617 27505.5586 11261.9545 18683.3412 110681866 endoglucanase Carbon Cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. trifolii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4828.402 6800.7178 8875.8937 4754.7589 6796.1232 3772.511 6753.9947 2329.6151 7644.1324 5499.0543 3166.3952 3166.3952 4533.7546 14802.1655 6647.4567 11517.4591 7767.6559 4682.2285 5927.2591 2568.4386 12326.2146 2262.4118 8399.5062 7385.401 7871.9425 2701.5413 4491.0881 5202.885 2800.5771 5933.9986 3157570 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 5966.0133 5871.0349 5044.3338 3037.0421 12985.3901 5188.3037 4596.2093 4252.42 11711.4161 5615.7436 6142.6745 5824.5835 5579.7396 4876.6548 14935.4208 10089.5205 7864.2484 8964.6151 5079.515 3817.9081 6868.6333 2656.1818 226366506 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 22217.6914 8951.4682 5623.7769 7684.4179 10731.5407 5432.3979 9884.0979 9948.919 8280.2707 9824.9345 115559.2762 5449.2445 22407.8568 32039.9623 14103.3597 14103.3597 11548.8368 18577.8456 11040.3586 20219.5541 16164.979 16169.6363 6738.5143 21461.9691 10628.3309 5974.0428 31961.9005 12053.2285 12886.304 6945.7208 11121.3862 11046.3338 9043.4255 14359.2185 306505156 amyA Carbon Cycling Carbon degradation Starch Enterococcus faecalis TX0860 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 56254.7893 8950.958 2452.4107 3142.6114 4767.1517 132712.6318 5410.9653 5288.2051 3760.0542 8575.6954 5782.2455 6674.1939 8042.4738 2826.4242 3788.0975 7590.7419 2566.5824 12440.2249 3764.2137 8446.0723 2879.0382 4173.2714 3894.7302 2977.3723 312619710 amyA Carbon Cycling Carbon degradation Starch Eremococcus coleocola ACS-139-V-Col8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 249417.5777 38027.364 446793.0835 17305.4987 11593.3019 8161.4713 197177.1612 9847.4334 62200.4847 31310.1866 14154.9458 310264.6746 13497.7608 14434.5283 15234.6045 27689.5423 27689.5423 10249.5635 29702.0491 16272.1923 19101.2652 49853.4699 23250.1728 29372.2632 18335.6239 20247.5405 10371.4746 95859.9375 27073.7793 27846.7857 10283.3925 21480.5264 19312.5971 15169.5669 406019.6556 220681952 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Thanatephorus cucumeris superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus; 5756.8986 7276.2499 8599.8843 10429.7626 6979.5075 5932.525 3712.0755 4725.7454 9372.0621 6280.4769 4284.0005 181934.4709 10962.4981 8846.3797 8863.2974 6635.6917 6635.6917 6567.3299 8917.4823 12519.8035 21801.0312 7551.4188 11293.6846 3776.1291 5664.9082 11084.3798 3678.6273 25342.84 12322.9437 14172.5679 7200.5182 8651.1508 8093.0294 3879.0719 11145.3744 46519999 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17144.7848 32483.0125 20669.4616 11878.2556 35748.9671 3889.078 10332.3853 8300.8238 3945.3381 106411.8133 63629.2001 10632.347 93369.538 4058.3917 4058.3917 2734.339 7017.1481 4039.8453 26473.5862 3965.8825 12105.8712 4078.5375 7390.271 7243.9567 3729.617 17170.7661 6854.8204 10165.0999 2695.8393 6258.7947 4306.5263 4965.6565 4413.7708 255068644 cysJ Sulfur Reduction NA Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 263785.3824 55365.3917 32832.7441 65894.5206 107342.7061 40813.7788 44960.1825 214578.0569 84754.3995 67292.9699 147325.5639 107375.0515 2061066.3912 208769.0825 139154.1969 153499.6082 76441.8927 76441.8927 45513.9315 78363.1963 68854.5671 127007.8705 132907.2248 151185.9559 30751.4682 46037.0407 437919.0846 114331.4175 179853.9858 117548.1225 95469.594 31964.4526 59521.7118 77709.5978 30149.3111 96960.3257 117609203 dsrB Sulfur sulfite reduction NA Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 4208.0584 4415.4322 5209.7237 39920.7082 14705.807 3615.7818 5214.0679 7632.7616 3995.415 123338.7432 8559.7379 5339.0671 5345.472 5995.3545 5995.3545 3789.4919 11242.5342 5731.4143 4801.6761 5127.4734 3895.7089 36879.5084 10267.2839 90601.0932 16924.9068 5462.1826 7618.844 16314.0985 2727.2422 5897.9255 383791512 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 41822.0822 12455.8962 7375.2924 74761.1991 14619.2472 8568.6161 17040.4197 40656.1593 40949.9188 19128.5438 41274.622 506582.35 29862.9707 68471.8725 48659.771 32609.5478 32609.5478 13637.7875 31992.046 26141.9425 27172.6699 29229.0828 43291.5316 11732.1233 92438.4986 30777.1021 36558.2667 326414.8291 62696.9154 48542.5622 17781.0525 23456.719 27321.121 13000.1756 39105.9782 312959580 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 188636.7302 26491.0716 141751.5653 57409.337 68661.5137 17757.5667 45453.196 60236.9077 120024.8027 158527.2376 193611.6169 82774.0284 905228.9778 127240.7122 177079.1262 147837.6552 331161.4273 331161.4273 36570.3254 152734.3636 41819.1608 77324.4166 114691.3587 62620.7472 109017.633 96684.7606 159757.7809 108028.9725 681780.7025 143728.5449 91094.2385 144101.8455 61486.3476 103286.9714 68132.7264 413634.7078 91683347 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6601.268 12312.3934 36728.8035 11049.7933 10039.6319 7794.0964 4730.7564 6184.3475 9851.3661 5118.8213 217280.4482 10632.9522 11159.7838 8494.4254 5111.3234 5111.3234 4470.1713 19340.4113 12150.4596 16287.9864 10038.5519 45374.107 7196.7737 23411.288 13182.1895 7348.5022 20313.5402 4079.5593 9483.8478 7550.5695 7852.7244 9477.9461 6333.9022 6586.2566 34370136 lactase_fungi Carbon Cycling Carbon degradation Lactose Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 7688.7418 5170.1071 18045.8171 31327.048 25802.9457 5319.9201 8315.846 6500.4522 9520.0158 8242.4439 22243.2628 158109.48 8333.0366 46388.1613 15680.718 12827.2415 12827.2415 25507.2103 39366.3627 11145.1076 4965.619 11984.6769 10882.8717 4476.7013 10664.5985 21475.4792 10524.0155 36641.5009 14330.6183 21804.6305 10201.4039 9480.7218 7159.1018 4936.0271 9215.8212 29137736 narg Nitrogen Denitrification NA Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 49140.2685 19940.4414 26352.9853 50124.1628 23106.4524 21897.4773 22035.9407 24024.402 16349.9939 27806.7959 23572.0849 61937.4117 3407313.4357 33980.7508 54158.0034 34041.7586 18791.7152 18791.7152 17639.208 42749.1991 27810.2956 36770.4509 70828.498 29557.7192 29701.3113 18767.2156 23496.2706 16907.0854 79691.1108 34343.5989 49594.3927 17394.6824 27077.8459 41482.5287 25043.7934 38661.3796 373548328 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 4944.9907 6818.114 5311.2329 3241.1702 3228.2434 4560.9851 31808.0512 50252.8004 362204.0554 8236.3116 5297.9401 6613.7429 6613.7429 3989.116 14504.5117 7910.9735 4267.189 7837.6319 7660.2184 2470.7298 4867.8691 10785.2051 4185.3211 20072.354 7610.0541 10631.0998 3489.1151 5663.6217 7491.7795 6047.6147 6829.9493 342130856 urec Nitrogen Ammonification NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 7650.2703 4934.0622 11315.3265 16551.5708 6418.5821 5565.3653 9852.2267 5294.2761 7960.1638 5037.1293 125323.2097 4684.6689 6618.9997 15915.4958 3772.0648 3772.0648 3148.9223 10514.8378 6452.9336 4687.3507 5106.5393 5234.5206 2755.0652 4409.6382 6668.506 3044.4068 11433.3279 6915.6758 8381.1973 3109.726 5147.055 4682.5523 4181.7807 6302.7158 297561223 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 79991.3335 96800.7704 1911493.4329 57277.4004 5994.2726 21949.6278 29543.858 6483.8867 40253.3632 25190.3266 44344.5796 545732.9672 13513.0025 72993.8345 56287.2667 20088.6271 20088.6271 18487.1313 90257.1097 19733.7431 45735.5547 29043.08 37435.0306 30272.0507 31264.1605 18356.1096 16793.9394 56029.2986 37516.1696 33448.9162 12419.3586 33643.2263 21138.1132 23012.3422 30280.781 192359592 pme Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 4636.3226 5725.3383 8916.0833 3958.9629 7420.5884 11681.6699 116090309 aoxb Metal Homeostasis Arsenic Detoxification Ancylobacter sp. OL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 31217.0801 38688.0079 40444.4605 13185.7397 314978.7524 37269.2634 18284.7493 15302.9539 64785.9159 50523.5492 259639.8748 15740.1372 58243.3905 25208.9186 17904.925 17904.925 31764.604 109086.0941 12150.0993 24753.3118 44961.0964 23004.5596 30156.2057 18961.5426 24300.5624 29643.3268 29278.9158 32452.4008 58394.3572 58001.4669 14473.5401 30177.4706 23063.4117 44956.3086 256394117 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 18187.7981 11190.4016 15458.2782 41226.0325 11102.1942 187561.76 11481.7906 8193.7437 14513.8281 22067.8967 18763.3409 426233.8583 41125.1351 40033.8103 25696.4776 26916.3964 26916.3964 19240.1407 38450.3499 57571.8622 28428.3847 31182.061 20144.5962 13635.8226 37895.9204 52443.0013 13227.8256 92076.2296 47835.101 43914.3024 19972.14 36601.8443 24355.6937 11558.657 30182.4743 112379621 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 25230.0872 8261.5587 6468.0733 11138.9759 7101.8636 12180.0788 15032.7266 11959.7995 188078.6788 9915.4145 15100.2015 53079.8859 173765.0528 173765.0528 10783.6636 40644.8943 12456.3515 14530.7886 18668.9794 12831.5709 22801.55 14690.5765 14692.4736 10914.386 32813.1564 40136.2018 33343.2031 9770.4201 18014.7782 27602.4083 9244.2305 12545.7355 359780578 cysJ Sulfur Reduction NA Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 209826.4316 10945.7552 9080.7505 7722.1229 13566.841 5473.8722 28834.7809 7253.0994 134157.6784 15261.5889 10667.3142 7806.1067 11149.076 11149.076 3972.2164 11255.949 7043.8875 6518.6122 63391.5271 7618.1975 4708.66 5749.6704 14043.3789 3443.5579 15956.3938 5832.5779 10465.8841 6031.1977 6489.3402 9745.3702 10750.3114 6977.9662 86372249 mannanase Carbon Cycling Carbon degradation Hemicellulose Pectobacterium carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 5741.7858 7945.7928 5185.29325 11121.6511 10268.3858 6205.3355 7442.7606 6142.0536 7354.4229 3116.81895 148168.3276 9618.78305 7555.59635 5125.48495 4089.8602 4089.8602 4557.49645 11368.61325 7798.03695 12993.6905 9835.3938 11091.52125 3318.9985 4669.69845 11127.4328 4071.08775 14446.65035 9173.9797 12014.88225 4477.39055 5639.3763 6556.6476 4049.4659 8681.29225 239821479 FBPase Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 284493.7373 2792672.4486 158845.4093 1190644.0291 234969.8509 159979.154 390746.6859 162420.1796 109001.9673 94914.6286 248042.1145 143906.7036 5956461.4487 239620.5178 280405.8592 336728.3347 136653.0785 136653.0785 146340.6548 331363.5091 133181.3756 111225.5377 165996.2553 114138.2028 110018.7577 134033.6761 238119.5743 292798.3615 236690.5038 156338.0302 204620.2381 105123.4594 159900.9386 134087.3189 81735.3094 168328.4125 111070407 pme_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 5545.7671 8715.0448 12824.2293 9671.5262 6604.238 4844.2457 6094.4448 7129.3256 4673.4831 132627.5897 6533.6023 7112.6826 95488.5772 6138.6576 6138.6576 6113.6983 9917.4579 7265.4432 18831.5486 6634.2477 17057.1828 3634.1611 7125.4918 10803.4247 4173.0549 6340.3712 7185.2755 9762.6428 6156.9721 6866.2992 7097.0667 4284.396 9023.2005 254467242 cysI Sulfur Other NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 20327.1388 5321.7295 8142.6628 69534.1229 2466.6318 3268.4313 4665.9935 8027.703 330488.1195 5980.9936 8200.221 93643.5538 12491.5828 12491.5828 4297.3555 9913.857 5934.6978 16277.668 10875.5829 10461.5667 7570.0052 15931.8043 4897.3289 17626.9999 16311.1125 6852.5748 3301.7951 5684.3183 20011.8259 4650.902 28261.6116 116266952 mer Metal Homeostasis Mercury Detoxification Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 40669.2005 13657.8884 39497.945 46819.3807 24792.0117 74091.9315 36692.378 29827.0898 12820.8612 20728.3621 23633.1591 498706.2483 30840.1585 44523.5786 26265.8638 27284.0006 27284.0006 10858.2228 79093.924 28313.0591 76000.432 34576.6675 16163.3776 11932.2666 37201.7871 34821.0269 27624.5789 657475.2842 75192.1512 32152.8577 22109.896 19707.2301 20486.2527 19131.6728 142727.9396 385676001 xylj Organic Remediation Aromatics BTEX and related aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 29634.7783 15448.9564 1727552.9783 66598.7273 18757.6517 18284.8296 31012.4947 6171.4752 41944.2964 39444.6975 19428.7657 3100889.0718 15417.7842 22201.4357 26204.8876 29358.3384 29358.3384 8418.1968 216141.053 23938.7826 10462.8118 24730.263 10584.67 12515.0405 19733.8902 35401.2575 122200.5422 109663.5182 59743.8458 29782.3216 17780.1742 20256.9958 33979.6161 8664.3108 25429.0209 77965304 nbac Organic Remediation Aromatics Nitoaromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7659.4451 5933.3769 3264.1247 3222.0043 4678.3641 75992.3016 4212.122 4832.9373 4029.3358 2482.5691 2482.5691 2864.8694 7449.0166 7245.0775 6280.0978 11282.5515 7436.3181 3195.2711 6096.3383 3147.4392 11064.7698 7453.8584 3234.6588 3931.4905 3324.6577 2538.4402 10742.4809 219858633 mannanase Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 18891.7318 74684.1957 10922.8943 20034.4462 20312.1192 100232.7042 14697.5022 16288.1674 31501.4716 52453.6607 760178.7884 20905.9166 33836.1955 9843.959 10070.2987 10070.2987 15358.2906 31445.7324 21879.0324 28205.4854 61674.481 21717.0641 13036.9117 13130.2614 34031.9373 14868.3589 46197.2551 25327.4182 26348.3145 28618.0888 27134.5519 31933.8113 11340.9938 132548.9504 114763537 urec Nitrogen Ammonification NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 50433.9983 32377.1848 18213.9134 23189.068 73335.6595 16628.2336 18428.5455 13754.8396 69921.6157 670738.8849 126173.6373 278614.1692 23353.8122 43822.3015 37378.7523 35392.1392 35392.1392 16241.0116 51439.6454 21019.7114 25356.1128 25518.7601 26109.4948 20822.1774 27935.3089 32439.2174 22540.1282 56565.9702 65951.8707 32463.4335 44183.6976 19638.6014 21969.446 17484.495 22319.8043 284037993 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 63152.0888 21868.8275 35899.3774 9762.5113 45568.3467 16458.4578 16842.7308 7224.2327 31245.0302 19024.7265 215377.4674 19841.926 24295.235 82111.4334 21684.0236 21684.0236 40717.9555 29273.6088 13673.1827 19529.9788 33976.7554 30860.9563 215375.1102 14075.74 41267.8277 31459.2273 35443.4911 27695.573 32288.816 42236.4597 25345.9139 18672.3142 17567.4223 30191.01 340345953 amyA Carbon Cycling Carbon degradation Starch Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 6467.7299 11038.8088 6220.4411 10073.1862 4177.7171 5055.3429 6590.7726 2828.0795 82519.9023 5347.1238 4828.5996 6475.8425 3528.0916 3528.0916 4991.0409 10426.699 8232.7888 5707.7649 7101.2845 5907.9089 4299.2203 4035.3807 11190.6789 4914.0159 13575.577 6744.9662 10665.5584 3590.8623 5465.8155 7909.3958 4632.3295 7239.4615 113530957 alkk Organic Remediation Others NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5381.5786 6655.7622 2401.0004 2417.6247 3580.1209 66668.8847 2675.7223 4818.6757 9780.3452 9780.3452 3127.2992 7657.512 10720.976 4940.3441 2624.6219 4168.2756 3602.7539 4667.1064 5648.8123 4344.6989 2278.7105 154345255 GAPDH_Euglenozoa Other Phylogenetic NA Leishmania braziliensis MHOM/BR/75/M2904 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 78468.3441 7362.0247 2709.8594 8297.0031 2557.8647 66019.4871 2627.9317 2627.9317 39899.0032 6451.771 3612.6512 5189.5236 12922.9126 2446.1816 4485.9387 8378.1894 5776.4019 7133.673 8599.9632 4575.0696 3701.098 2943.7076 18076027 metc Metal Homeostasis Mercury Detoxification Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 10378.9927 19614.1596 101602.2842 7282.6489 11280.8099 3637.5712 4204.6034 3510.8347 87202.9141 26200.0507 4117.3897 7456.2756 5140.4255 5140.4255 23754.0244 19632.3854 15542.686 4983.7994 17366.7106 17322.0269 2633.5905 804420.1989 8159.1149 7711.2995 2432.5544 5504.1984 7499.4216 2883.7504 4989.2514 332517123 amyA Carbon Cycling Carbon degradation Starch Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 8429.195 5901.4509 3448.8022 2335.7189 4989.5978 4634.4812 8697.0962 91184.4969 4811.069 5465.9357 2370.444 2370.444 8990.9814 5662.8227 3392.7471 3439.6647 7782.1496 7552.9539 2718.6359 2465.8029 6896.4194 3571.9914 7582.3661 6467.8316 8948.0077 2448.4821 2772.0548 3568.4624 2375.7836 8335.9382 161729073 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 16355.4807 6525.8655 11525.7673 17223.761 14727.0753 13771.1775 11437.5681 17887.1459 22615.6083 10364.4149 446038.6787 24459.9583 19147.7896 24160.92 12824.8392 12824.8392 16064.6876 38797.4771 26733.8814 19129.4184 34488.7413 19594.9338 9838.4421 16672.5231 47437.6737 11371.774 34357.2544 40786.1753 40809.2063 9312.7448 17892.962 16345.3947 6828.8568 17785.775 196175687 ppx Phosphorus Polyphosphate degradation NA Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 75102.4975 9202.1915 5741.4757 10844.6832 27196.7543 36066.0649 5175.4058 9481.1827 9226.6287 3259.5906 183525.3295 11165.8443 8384.7987 6031.3516 4183.9062 4183.9062 6391.7194 26194.711 11396.5521 17402.8521 12839.7252 8316.6008 5873.9677 5454.2694 14180.9637 5002.5908 19970.9598 11647.6276 14748.5862 6528.4461 7272.0471 10196.6717 7383.1057 17466.3737 339325918 linc Organic Remediation Pesticides related compound NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5934.0143 2958.6587 5026.3907 4519.7383 3383.9334 5078.4962 5876.1711 7825.9474 5168.8465 2073.5502 3201.2173 119391415 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13450.3606 103974.8571 16496.9307 24992.4762 16656.428 5020.5441 10991.7805 8515.4022 8679.4456 11051.5179 13997.6195 182458.5146 7740.6529 10374.462 14503.6673 14870.3192 14870.3192 5670.5812 15932.2999 46041.6809 9726.5144 8915.9383 115626.795 8285.3845 13183.9337 24755.8925 7184.2381 28031.718 118201.6183 21365.0628 7155.3024 70021.0125 14036.6948 5623.3556 20648.2709 333603425 fosb Virulence Antibiotic resistance Degradation Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 47377.7008 386202.4179 22231.5564 52637.1197 13762.2256 13153.7958 52032.9506 27728.2024 74257.112 21524.0172 19073.4756 531992.6147 31631.3562 32167.4358 36078.987 39467.1776 39467.1776 12711.1805 40374.4705 32642.2618 38921.2756 88917.3097 34528.9428 19792.3001 25955.6318 30482.5549 22147.4056 481674.8538 43776.2825 56442.4107 11185.9184 130858.9651 23086.6306 27759.4877 29521.8251 346921932 xylc Organic Remediation Aromatics BTEX and related aromatics Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 54462.297 104355.6584 375434.4097 16898.08095 10710.04425 107079.9723 57856.87185 59319.41305 48444.99585 60029.28675 45013.6413 1619455.0622 82549.1013 77948.44815 114752.71455 91305.9232 91305.9232 21863.27255 98484.8471 35419.3679 102487.673 55588.9719 45506.0925 32711.41175 48062.4546 50594.0797 42651.58655 138611.97245 36509.2143 65496.5741 31443.31895 60683.1096 55364.4805 26447.58035 58367.4347 299769922 pcag Organic Remediation Aromatics Other aromatics Acinetobacter oleivorans DR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter oleivorans; 8162.1678 3468.2664 3368.3656 2706.0977 6505.1857 4934.0825 3477.2821 100211.989 8747.3593 7320.604 5128.3079 3794.3459 3794.3459 3396.6422 8965.1231 6302.0053 8761.9787 7685.2937 6332.8311 3225.368 3662.6606 8182.5988 2876.9013 13142.5535 8902.9823 8293.0678 3130.9889 4613.3198 5343.4046 3207.3835 8438.4148 326388551 xylg Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 11290.4933 9999.8839 24669.501 13949.1917 7847.2163 13227.9915 13161.5443 119559.0494 8551.589 22940.3992 53592.7374 217495.9715 12256.7087 15951.3305 21599.2576 24673.5163 24673.5163 10818.7804 50175.7475 14074.9337 15241.1317 19570.0667 15966.4267 24556.2883 11271.5979 19434.8796 12678.7479 29633.2541 34702.904 22212.0505 14265.0272 17838.6882 25015.1066 35695.6618 39764.3228 302442235 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 24640.458 6782.487 6750.415 6631.6312 2458.3151 7947.8944 23487.4888 12336.3409 190123.9921 11522.8081 14011.6866 96535.6072 12317.8354 12317.8354 7802.6752 8505.1591 4997.8137 20382.6442 8012.1672 8914.388 2687.6952 5704.1882 33723.9451 2944.8479 15030.633 7008.0105 14421.9009 2874.6149 17865.7077 22745.3887 3242.1809 314710.7969 23304308 mnp Carbon Cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 4946.6965 3491.2222 70706.5724 5117.2298 4012.2345 7461.968 4788.3726 10577.3999 8150.9741 5045.504 2558.476 8117.2986 3755.5583 13942.6775 3915.3316 3094.128 4633.4442 4965.4938 3258.0227 10958.9101 29466012 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6482.5725 5244.8601 6681.0419 8079.3878 3320.189 4994.378 4010.781 4735.6043 2193.8075 2193.8075 2564.1716 4039.2776 6221.7725 4119.5575 2102.5453 3890.3908 7828.5422 1839.0873 5074.5507 3233.192 309307152 glx Carbon Cycling Carbon degradation Lignin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 151382.3981 5170.8385 22479.1561 26523.8009 8635.6791 7628.6514 7978.9168 4587.2519 12999.1886 14269.9447 18754.6837 189016.8526 17513.3069 18069.3587 17769.3457 12319.7449 12319.7449 9424.4378 12271.8459 15255.8392 17267.0929 24505.6425 8334.1 6659.5783 15623.8243 16879.7289 9389.1407 27844.5192 17619.3485 19413.2722 6515.9487 9075.7912 7667.7275 7705.6401 16013.3791 229362844 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 29139.5207 6012.8396 2699.5244 2933.5644 5034.5878 3040.9744 136018.8903 5579.6422 4745.6019 2466.0028 2466.0028 5050.3816 10603.3814 6820.9398 4956.3333 8678.0549 6892.9808 4908.6552 3013.728 6009.0759 2393.6438 12893.6133 4943.3971 7821.5961 3190.1491 3914.6079 3715.1549 2617.9475 10720.4926 281299364 amyA Carbon Cycling Carbon degradation Starch Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 66009.641 138143.597 2555.3416 6372.2333 3321.8836 2791.3291 37940.3455 391879604 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 114860.6495 23285.8613 179745.7003 38236.3651 27991.86265 20483.2573 164790.6348 45208.7689 12308.2658 164873.6936 366316.5751 25704.8612 508513.8923 35384.2015 33732.2646 25073.2578 17907.3665 17907.3665 17370.295 33460.7551 27284.1968 27836.0201 29850.6387 32165.037 16857.9543 15209.9843 35177.8105 22724.5459 65171.7688 55154.8226 73325.7432 21578.5492 18307.3201 36472.4226 12536.8076 38179.9327 363406122 cda Carbon Cycling Carbon degradation Starch Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 15043.8792 6062.8189 15085.7174 7924.3583 6776.4858 7748.4566 6228.0961 17251.6522 4500.5578 250424.7124 10165.1114 16267.0656 7182.6428 9590.506 9590.506 5311.6091 17585.8702 17288.2147 8793.5392 16996.8757 9827.6869 11530.8253 6559.432 10759.0839 7961.2644 25964.5717 42587.8149 17827.8365 4363.4014 10406.7944 8675.142 4368.8852 17295.9199 160917811 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5141.1585 52949.2857 10435.7841 6018.148 193174.7114 4345.401 3504.9502 2926.3108 84211.0357 4609.8713 8146.9285 6021.4492 4362.6424 4362.6424 7603.2343 4839.8543 657278.7643 16208.804 3159.7546 4184.2256 10453.8533 2270.4737 13651.4823 6429.3388 8513.2728 3557.8029 6125.4893 4182.894 1933.9126 315592598 catechol_b Organic Remediation Aromatics Other aromatics Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 8751.189 142948.3081 6096.2262 13176.7765 5482.8792 4560.6969 1956.9783 6503.2449 18603.1407 4805.1048 113457.2626 10033.7978 7059.2752 11600.3069 6325.2251 6325.2251 7805.9697 29152.0143 10814.719 9583.5835 12555.5091 12061.8642 5219.6372 5381.1321 19723.0662 4568.9612 22587.2696 9005.002 13025.9773 5314.7338 5578.3152 10382.2365 7068.706 13106.1547 189335366 xylc Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 316103.2471 267427.6136 214171.9748 528756.9992 315268.6674 145763.7967 613693.2555 297659.9378 407886.7847 302879.219 390664.199 291402.8976 7690727.8424 249360.6671 260932.667 614815.8019 549765.7617 549765.7617 255082.7484 324406.7056 155996.7241 1587209.7028 468189.3405 310734.4551 238852.5359 205003.9965 317033.7594 331642.5675 1008735.3516 625452.9617 390778.7118 219187.8175 278307.6017 214206.3799 216543.4741 438897.0044 115517221 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 12990.0187 14129.8642 18524.8679 3082.4391 4550.8885 5906.6506 3290.9268 11612.9298 29800.8485 13477.896 4368.5496 6534.2149 7578.8846 7578.8846 3270.501 14586.4602 9224.8787 5545.5637 12716.6241 8130.7768 3456.2834 7408.5391 9467.3902 9847.1233 13251.208 44118.8205 9525.1729 7386.8858 9281.5337 9959.0517 2255.2008 73763106 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25841.0547 2635.7273 3417.0621 5304.0791 8608.8145 9111.8584 4862.7986 105619.1211 3423.3966 5888.724 7113.0068 7413.8849 7413.8849 4191.2339 13704.6539 3593.8431 6483.5701 44452.2365 8041.0162 27316.625 5880.241 7603.2909 3946.3766 25919.062 5133.8302 10806.6696 4002.4122 7192.3541 78151.2786 5092.389 5172.8783 319749857 amyA Carbon Cycling Carbon degradation Starch Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 13846.1385 16107.2719 2255571.3714 1594019.914 103369.1273 18990.9575 242748.4036 12830.4073 3358.6789 10189.4923 125157.2948 9138.7184 282438.3707 40606.554 18280.7245 29962.7228 17250.6571 17250.6571 9527.1375 16465.3605 8773.6915 8351.8489 11423.2773 12485.3909 4379.8428 9967.7577 27491.9309 6200.3086 30496.0777 25523.3676 30835.0622 11120.1059 12103.7929 11900.8302 4293.1818 14026.7258 330413222 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae oral taxon 107 str. F0167 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 17657.7339 15870.3428 2530709.0383 6912.5021 126539.9825 62518.1501 10384.7618 15110.0423 79038.7705 8877.8004 273144.9034 28221.5635 8347.1209 9345.5132 16965.3779 16965.3779 10186.7358 23081.6072 14732.2563 81134.5869 14484.897 26644.9368 10780.9343 9239.5736 19129.4944 46397.6635 36295.7889 12690.7071 21426.0935 13168.256 16682.3798 14241.3505 7806.1148 21205.5878 256800313 urec Nitrogen Ammonification NA Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 31887.2165 4428.2544 10643.4589 4433.2051 5824.2105 5693.2217 10828.4899 9848.3817 12006.1184 4205.6572 95464.1058 11916.9283 5000.6834 6783.1336 5951.8089 5951.8089 3932.8729 37410.3829 21104.6333 8380.0308 6567.738 7089.5565 6590.696 10296.0243 13126.1168 16535.6301 9697.1359 9397.7621 9032.0698 10042.2145 4050.5195 4805.0437 9809.8536 56311637 chna Organic Remediation Other Hydrocarbons NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 4042.4256 4017.9095 14620.4762 4580.4645 9483.442 3756.2586 37798.3394 34178.889 25296.4585 72294.0254 10136.9635 21997.0707 5497.6952 5190.1218 5190.1218 6460.567 124482.2817 3639.1847 5738.688 8133.1757 2310.5833 6971.3374 45898.1324 8694.7856 127648.6 52221.9514 7640.4598 2699.8209 5507.2623 6487.0967 5207.9044 4770.7665 330688066 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10730.9372 12875.4 4339.2389 9713.1696 8132.1163 7883.555 11209.7806 13778.0577 94024.6231 10451.5592 26498.2539 9981.3111 10946.2637 10946.2637 26719.5797 15310.7677 8724.2651 7574.7156 21724.8452 8931.2747 6000.0499 8474.8456 8719.3651 6892.8476 15231.3377 13168.5595 12882.0839 13346.9896 10695.4099 8983.3792 10307.7119 10091.4574 270334236 amyA Carbon Cycling Carbon degradation Starch Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 11789.8722 7107.7787 21567.8067 6938.7492 7277.4295 16149.6263 11766.2779 9671.7824 16243.4662 263341.875 8037.7091 20994.27 10733.4444 4528.3342 4528.3342 9281.539 13565.9043 12108.3452 19804.4345 12727.6219 21116.1796 4920.8981 10370.1952 11111.2602 11763.6677 22998.997 14495.8289 11702.6083 14400.6003 10833.0972 8614.7406 6456.4355 22634.0178 17431979 norb Nitrogen Denitrification NA Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 14925.7397 11355.6222 9104.8669 7972.0764 9174.2904 5365.5397 6127.9018 4553.6803 4523.5073 82526.8074 6115.1882 10678.5773 16715.6337 7425.8772 7425.8772 3600.7243 6053.4564 5441.068 5565.6818 5658.8551 32615.943 7198.2764 11204.0236 7653.5367 25615.6834 11917.4452 5883.2245 4244.8531 5659.3188 5582.9819 5806.0456 227205704 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. HI-31 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 19379.4867 13381.7456 34174.6841 19974.4062 6422.3885 12392.8068 12963.3221 14636.2153 21140.9908 22086.3052 22867.125 501198.8976 23127.8144 19459.0295 22742.0433 10729.9226 10729.9226 14276.1254 31085.3648 27726.9788 18557.8915 30930.2735 35490.0248 12958.9794 11449.5295 39413.8276 10086.5235 36920.8242 20928.6845 24841.6165 10304.0034 13803.0376 14770.4678 12460.6517 28094.1394 365846550 chitinase Carbon Cycling Carbon degradation Chitin Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 4796.384 4594.0917 3765.9405 3882.546 2825.3526 6094.7131 2680.5189 120272.4291 5041.1287 4143.6823 4143.6823 3122.3436 7369.9119 5480.7203 7191.7659 7427.2239 8936.1266 3473.3129 9892.3165 3205.2761 12272.2859 6754.0105 9016.6198 3496.0386 5011.6287 3970.7876 2708.6308 7643.5097 385763586 dsra Sulfur sulfite reduction NA uncultured bacterium ws020C1 superkingdom:Bacteria; 52739.5438 18982.1586 45910.5223 69935.4103 47293.7995 36727.6404 36286.5802 55927.4002 772082.6078 41042.2504 71065.3474 64405.6116 978775.3631 76468.9064 67736.5075 34867.0688 73712.052 73712.052 40910.0012 53251.2081 27919.8986 219283.4909 129407.9367 62725.2544 32025.0498 45520.3051 43741.205 81844.0289 100239.4432 75175.1525 80890.0505 28164.555 31837.9678 36048.9821 26146.6799 58881.0566 147921163 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 4847.2985 4783.3569 5144.3264 3580.2906 5308.9851 5163.2698 2333.9534 4968.3469 2221.2816 6009.5244 2356.1938 2123.8133 4894.0105 157804768 APS_AprB Sulfur adenylylsulfate reductase NA Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 6860.1133 4671.1194 3338.2935 2284.9845 2350.4148 4441.467 6365.2742 2766.2874 87982.3412 4423.5201 6381.2016 5518.7664 2180.6824 2180.6824 3861.9745 10357.0235 5361.8003 7196.1337 6046.8143 7530.0154 9963.1673 3414.7335 11598.7261 4568.7637 8447.281 4825.3339 8949.238 2252.6348 3132.0016 6142.746 3509.7533 7758.6424 52350168 hbh Organic Remediation Aromatics BTEX and related aromatics Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 16591.9654 7067.5219 3333.8994 88089.1968 26127.0236 7165.4504 6491.5945 42727.0104 114223.8417 10519.0164 28082.5594 7374.2841 5076.0653 5076.0653 5991.8537 17868.438 8992.5819 9399.6519 10021.0263 10613.7328 11643.1984 6687.2583 10477.4498 7299.9139 19549.8141 7147.5108 11956.0298 4755.6892 10644.3301 6525.9683 6343.1392 8519.1979 125486857 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4914.6918 3725.4735 3647.8912 4047.0552 9669.4548 6273.8158 16208.4006 6644.051 4524.3061 40000.1545 3687.0759 3687.0759 6964.7681 4483.286 8304.6443 22082.4136 4844.4209 6069.8827 5369.2504 9159.0168 8379.368 17999.0023 6852.0071 8449.6385 13578.0246 6731.3668 6277.457 5494.8486 41395927 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 11253.0405 6327.6226 7655.1943 4732.4321 5004.0597 2970.4201 3954.4419 34870.732 6788.703 146310.1678 6760.2188 10965.5593 7790.2615 10228.7057 10228.7057 15132.4638 23044.3578 5559.5134 19940.2348 17124.634 6905.7015 3457.9375 8534.2378 12892.5438 8598.3934 25783.6576 5908.6198 18326.2022 5666.9574 20901.0912 4108.8984 3847.0327 302459478 amyA Carbon Cycling Carbon degradation Starch Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 29901.0975 58835.8503 60902.5426 610514.0049 169570.1367 15934.7752 80336.8338 38140.6187 45279.9018 52660.1565 40872.4863 1126455.5155 75647.1844 91646.2394 132466.3077 75651.7303 75651.7303 51369.1253 98451.7606 45416.4786 25336.1694 25288.1693 100853.3487 39153.7868 48810.9937 155730.123 29153.3344 86426.3187 84816.8079 125334.3953 33020.1072 43862.7269 73082.5097 17696.4611 42400.9225 294341083 narg Nitrogen Denitrification NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 57607.2579 15847.5826 30360.1442 25801.9748 21463.1931 27301.9649 32924.0231 23677.5711 19140.5555 72304.3735 20281.772 447439.4681 18072.7211 51144.071 26642.239 15602.6645 15602.6645 10481.3291 46661.2343 42234.4459 20637.3444 41397.5148 33030.057 23197.8389 23556.8204 24125.7906 16453.8379 88011.9758 27733.5461 29418.4134 13288.7118 17669.1473 30770.6745 16052.8241 28447.0779 290962205 cutinase Carbon Cycling Carbon degradation Cutin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 62295.7273 10021.0846 30352.7031 116806.9457 55209.9307 47240.1409 40801.1313 54908.1633 52363.4556 32723.9694 64451.7017 30889.0277 952602.8897 147654.3446 147103.8158 68837.3027 44431.5272 44431.5272 51711.4303 61304.9694 41637.0053 70775.8575 139486.4371 57915.4506 28054.0655 34907.8132 75759.6071 31813.602 99027.2428 44300.8324 63509.5416 32419.2338 67648.8811 68487.5217 38323.8377 127727.0731 162707998 catechol Organic Remediation Aromatics Other aromatics Streptomyces verticillus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 31719.9064 173602.527 14697.2625 18723.04 35624.1708 23676.3802 16189.6378 24276.2841 34700.2908 12495.1937 16018.2045 21284.8214 662614.7917 23125.5395 22618.568 27020.3466 34248.9629 34248.9629 17932.8222 47132.4616 15806.0338 21035.253 53527.3257 23080.7367 16594.882 34190.5697 34269.7852 31324.9116 129698.1617 21074.6377 41775.3021 15424.1766 40591.158 37279.2187 13902.0251 19506.7522 51245673 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 4349.5372 2903.4474 3870.7528 86709.3639 5199.9956 3549.1539 3640.0019 8102.954 4654.4805 4733.6977 2447.556 3536.9455 5698.9501 2369.0645 11343.8759 3638.089 5004.2548 2491.5698 3628.5214 2815.004 2391.1685 6993.8311 328886666 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 41910.6851 5788.9818 2585.8447 3469.5125 3464.2093 22218.2657 9384.14 34761.6171 129414.6062 4912.8991 8425.1609 3763.6383 3763.6383 8290.3047 12959.5666 6334.2021 5853.1279 10440.4431 31329.7909 7503.2024 4385.2125 22210.8388 3713.8662 11600.8042 10524.5902 6553.4511 3795.8629 5713.0471 7004.1432 3224.7543 93342.2515 6694728 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 5406.226 6686.7369 25839.6876 7213.5302 7105.8961 2937.9667 5720.2652 7760.5358 3139.1084 122848.8589 9495.0695 9137.8111 2647.0186 2647.0186 6095.6499 13012.3381 11479.1174 8697.9599 7861.8627 12580.3573 3398.3091 4908.2609 14824.1897 4555.9783 17662.2746 9348.6968 14471.8189 6621.9598 5338.5971 8552.6628 5540.6268 9968.8852 319780279 urec Nitrogen Ammonification NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 8266.4226 7753.6348 44877.1822 4982.7062 6905.9821 5712.1001 8055.0369 7060.4989 92675.8787 3884.1476 9052.2692 10390.7531 10390.7531 5373.9971 15422.1213 5701.1292 9355.1453 14788.7138 13385.928 3190.4682 5794.3622 6193.9064 5091.5275 27062.1488 9993.151 6393.108 4446.4405 6679.3816 8996.4471 13540.9621 7118.7296 109897169 xylanase Carbon Cycling Carbon degradation Hemicellulose Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 43987.7564 13037.0151 60167.4925 32687.2242 56343.7085 30644.9073 20495.87 19714.9353 32005.5835 33242.3092 29162.8271 459878.1429 23648.3826 42251.2049 25669.8367 21303.6821 21303.6821 25518.8337 46472.7299 27142.0212 25639.1598 97718.5882 40921.5966 19139.2731 48415.4978 31922.1126 29259.1369 85141.2667 22478.0047 36380.4736 18818.8038 35363.36 33155.9255 25106.7983 47756.5681 343788064 pmoa Carbon Cycling Methane Methane oxidation NC10 bacterium enrichment culture clone 'enr c 332d Lieshout clone 12' superkingdom:Bacteria; 10463.8792 5531.1093 6319.1359 4965.9982 2204.6118 7905.688 9378.4421 4404.8323 1013172.5321 8474.8678 5925.4732 4648.1841 6810.7145 11979.0081 14442.1229 4872.6962 7308.8919 6714.5417 5508.6541 3736.1386 8795.2644 4236.1784 19669.3718 10055.3673 12591.5687 3273.8538 6464.1638 4387.1155 3326.2617 8558.9934 159044699 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 4338.9357 4246.6475 10385.6886 6260.1532 2886.6692 20658.2984 4377.9374 6094.016 14389.985 115484.3128 6221.2226 5655.2806 3792.8635 7500.7701 7500.7701 4089.4442 7358.9246 7873.9296 7159.1684 168425.4754 6072.7913 3559.2651 15245.7381 13511.9066 12223.0277 10611.5958 10011.4025 3911.6471 3568.189 6039.655 3471.1208 6157.6694 29605369 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 15554.1337 24110.0257 9603.7079 93699.2376 10160.4891 57375.6728 12637.007 5972.7808 8783.0452 11988.5464 5998.0227 193903.6052 27343.6523 16606.7522 31928.1754 10118.6331 10118.6331 9867.9886 18818.3866 28214.8161 13727.8621 40673.7633 11162.1426 8417.7338 10977.4588 26200.1159 11249.9561 29578.3986 26180.3412 21401.505 8991.9103 27020.4938 20410.3429 8923.0146 30028.0011 333444662 APS_AprB Sulfur adenylylsulfate reductase NA Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 9517.0068 10580.3879 235747.0094 10942.5731 12918.3582 9006.1611 6429.2369 9012.2235 7188.7397 190253.2717 14035.3126 8706.6967 26404.8446 9178.4615 9178.4615 5487.9997 17956.6139 8503.9598 4308.4986 11339.0196 11914.7365 4201.8651 23204.523 21234.3089 7902.884 33610.1097 30365.7631 15021.1933 7049.1664 6354.7159 19567.3512 6118.8055 273765.726 32399641 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus sajor-caju superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 7146.8168 9985.4642 77120.0373 4825.396 4541.9036 4934.6625 9101.7816 18387.9658 5650.4633 178333.2033 6250.2024 6259.8945 5745.4973 7823.0388 7823.0388 7278.8537 14560.6102 10727.3242 7675.7381 8544.3971 11660.6394 5748.851 6833.965 12063.229 7181.9436 15110.0333 13627.2297 17935.7351 6510.5712 6826.6809 5892.2423 6965.5294 7862.6902 10956961 bend Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 6821.071 8387.9971 31475.507 11582.3406 5485.9341 4892.9416 2727.1475 7545.3555 8975.0078 4956.1112 326661.8311 9970.732 10688.1451 10794.4655 6679.3399 6679.3399 6475.8099 15977.8672 12352.1404 8778.0714 8918.224 10688.4793 4757.435 5618.5065 22048.3075 4669.6004 19230.0232 18910.5477 22525.3391 5601.8391 8131.0854 7806.6866 5079.2098 11703.0972 154314211 cutinase Carbon Cycling Carbon degradation Cutin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 15946.448 17698.1926 20038.6023 18008.755 8257.1645 8437.1913 7359.4812 2727.4386 25622.7945 22033.6321 14427.5254 207444.8283 14167.0309 32656.0854 13630.7371 10490.0671 10490.0671 7252.2951 36549.7348 16405.8909 14527.6125 16319.8825 11131.3656 6073.1763 11480.6125 15027.7164 24645.1094 39461.7539 24687.8764 17281.9789 11736.0307 12280.6232 20961.3126 49038.4895 8621.1136 167563648 pcpb Organic Remediation Herbicides related compound NA Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 4182.1348 7445.9141 8211.2547 19381.9906 9908.0773 24810.9677 21601.8814 6950.8896 109096.9567 20662.6597 17561.2344 138608.3731 16477.5827 18414.0692 12651.7901 19785.4072 19785.4072 6288.8966 76183.5532 20800.2149 15927.3156 12881.6874 8133.0337 36316.3976 13987.8811 30241.2964 31619.4465 40988.1822 12962.3512 16598.8583 9254.8214 9851.0945 9792.683 17333.5888 25457.53 302682011 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4089.6316 4343.2387 15765.2828 5804.0541 3910.2439 4193.2279 2153.9281 4567.849 5368.4025 4423.6616 101672.4089 5965.0085 3494.8267 21109.3927 21109.3927 3789.2681 9765.0175 5970.0279 6650.7718 7351.1548 9108.6938 2406.3295 4699.9294 6461.5172 3014.1508 13528.0984 5678.7543 5479.4449 4578.8242 3933.9632 3398.1187 4443.9738 6757.5288 555995 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 21142.3035 25216.7809 7479.3707 11346.5933 24788.4355 8484.4874 12535.7613 6790.9335 32451.371 24571.2243 15477.0017 321107.7749 26433.3273 17323.0358 10761.1493 16402.2184 16402.2184 10790.4696 23229.8035 18280.4618 40716.2739 42286.1115 16881.2497 9470.3258 22380.3699 25496.7743 11943.6223 59935.2249 24598.7677 29486.9372 8013.2172 18296.5831 19304.3882 8809.0701 35922.0403 306833873 amyA Carbon Cycling Carbon degradation Starch Streptococcus bovis ATCC 700338 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 8262.7058 13021.7136 4649.8649 4702.0603 4622.5583 73800.3848 6730.5667 3172.1838 2333.8111 2333.8111 4071.4173 7014.1344 4676.0221 4033.1478 4888.2924 5080.1826 2106.2549 3834.8679 7604.4398 3250.5232 15467.5914 6969.3594 9599.2625 2738.1378 5320.1328 5109.788 2949.6134 5667.0372 320100952 amyA Carbon Cycling Carbon degradation Starch Desulfurococcus mucosus DSM 2162 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus mucosus; 4664.1213 11009.7791 5424.3247 4414.3021 1991.7692 4431.4574 8845.9271 2566.1681 82269.919 4736.5134 5259.2911 2188.0345 2188.0345 2852.7403 7759.9863 5050.5266 11598.5316 9228.1371 11592.669 6270.9313 8394.8037 7846.8516 6955.9136 2043.5882 3328.993 3898.5496 3323.2343 8887.6457 237878261 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 22110.0923 19481.7522 10190.2305 579319.3825 13763.6098 12751.0997 22648.0028 10497.8624 18581.1526 159427.9033 11251.2956 464204.333 34233.1298 30500.5342 17145.8112 22591.8083 22591.8083 30407.3044 39255.3415 17860.4087 18872.3325 32795.39 16415.0094 17325.1571 14554.2482 31392.8134 12944.497 85012.0778 79103.1516 28864.5706 11375.379 15843.9511 28222.6118 13265.8876 21147.1949 396926969 terc Metal Homeostasis Tellurium Detoxification Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5799.7699 11449.423 42763.6514 48654.3638 4133.7473 12947.7373 6651.6721 8135.3033 4911.7655 201907.8683 9063.4433 11844.6774 14296.6812 10901.0658 10901.0658 6081.0604 16133.6064 9800.7867 152771.1946 6985.712 7157.6797 2447.5521 5703.6151 20717.8478 5102.389 23800.5819 12710.9419 19856.4679 8115.9031 5973.1594 10267.1778 3448.191 7641.6765 9081816 amyA Carbon Cycling Carbon degradation Starch Pseudomonas sp. W7 superkingdom:Bacteria;phylum:Proteobacteria; 12879.9766 21660.6343 9735.8253 3301.6242 17591.7301 7296.5806 6394.699 10362.0584 4388.7773 220413.1127 8193.6869 6190.6431 12150.358 6992.7167 6992.7167 5024.4626 17276.3269 9263.0918 10027.7617 11684.884 10378.2762 3744.5542 5793.2953 15471.755 7866.2674 19035.0851 12366.4182 13330.3267 3896.4592 5411.0743 9495.8553 4177.2374 8069.9784 224537333 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 5983.0527 19636.1667 3325.0488 3156.8025 2980.545 3853.969 27069.4385 88076.3806 4101.5457 5115.0561 12281.6701 2342.0968 2342.0968 5416.0121 7247.0135 3938.7499 2517.0234 2412.7147 8242.2422 8849.6799 6537.0703 7147.549 4331.1661 3032.9542 3334.7511 2102.2736 70731629 arylest Organic Remediation Aromatics Other aromatics Pseudomonas protegens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 8613.4905 60989.3459 11792.2395 6107.3234 16909.0542 5362.5067 8156.2274 3779.1968 230508.8518 9515.0275 9257.5898 27203.3052 12500.8599 12500.8599 3534.8554 16362.1345 12770.3534 4601.8912 7309.88 10563.827 7461.8047 5836.3234 17470.5017 4258.5052 65378.0019 14925.6478 16978.653 4438.5985 6121.0284 10170.1463 4029.3562 9706.6203 4204379 catechol_b Organic Remediation Aromatics Other aromatics Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 37171.0665 6674.3068 7553.2637 8177.1928 25571.3947 31056.91 10422.9406 4335.0471 12445.8584 9149.5682 15314.4605 216351.928 10194.7914 11375.6847 9457.8597 3742.7029 3742.7029 10608.5857 20847.7994 13090.8706 11599.7391 24548.6549 10036.1351 7340.546 7083.5157 12921.5568 8311.329 25175.9397 18545.669 14473.0552 6734.8289 7070.8481 14290.6086 16507.4781 24605.055 283979149 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 13335.7224 288110.203 12883.1794 21787.6351 10495.9738 10809.43 8259.8646 4571.8965 8963.58 9298.7444 5797.9312 191976.1148 9044.9353 14964.785 21147.0231 15193.5382 15193.5382 6593.8138 9862.3226 7326.0876 6731.6356 15014.334 12688.8191 4096.7993 5258.0863 12831.1299 4783.7648 21749.2067 12767.0078 22888.6812 27043.9492 7710.9098 6127.3868 3403.7996 10175.3545 255038613 cellobiase Carbon Cycling Carbon degradation Cellulose Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 27009.6514 31147.3666 45289.0727 19277.5982 18348.9701 12386.8802 10380.8403 14806.4695 23905.1419 12823.2598 306640.1796 15810.2716 20586.2633 60814.438 26645.7995 26645.7995 9445.3131 48747.2735 14361.7294 47313.9304 29140.7879 43433.8584 11892.6045 10828.3517 16931.4131 10819.8943 49545.8902 20311.8909 26700.278 9004.1437 19696.3359 15632.6978 22526.887 22056.5808 56962348 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 10666.4758 6700.9391 6653.9515 14511.375 5722.3827 21336.3907 5672.6351 7794.1282 8459.5871 4722.1063 144627.0399 8106.2838 10468.6316 12083.0535 5261.8794 5261.8794 23741.6697 15834.2677 9182.3679 42246.6638 10857.6198 9847.8616 5180.8257 4560.6378 11094.566 3975.701 18089.6076 8464.307 13326.8786 7180.964 5904.1973 9044.2011 10348.4928 15281.8072 354819366 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. 7_3_54FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 17777.281 119956052 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5983.8855 3702.7075 4273.5879 7686.2824 3948.8617 99030559 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9882.4975 6660.9731 6876.1854 11464.3909 11265.2245 6604.4458 14256.4185 3523.5296 148545.2642 12243.7115 8262.8216 5124.386 4608.1492 4608.1492 4040.3783 12395.7611 6897.3207 6447.8237 9489.1491 10040.5976 5821.1081 6175.6944 9011.4916 3769.7109 16894.9983 4857.9238 12961.8047 5543.5855 4757.1718 6276.264 3095.7978 10021.9399 196194725 amie Organic Remediation Aromatics Other aromatics Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 14655.5055 12733.3993 8191.9751 121153.711 8206.1193 8402.1502 10022.4048 9349.9994 11895.4817 18493.4295 9979.555 337653.3769 41983.0748 17923.3967 9240.2823 9251.8127 9251.8127 12373.9311 24227.231 15493.2084 15201.9821 15937.8024 19013.2861 6443.9798 7969.1917 23344.603 6693.1727 26023.5429 17884.8522 22162.3177 8249.4351 9431.55 10087.3242 7542.2281 17966.4415 46392670 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 10484.2585 6795.5882 18056.2634 11693.6115 117408.1691 2330.7352 10230.3364 10441.176 8822.0086 29585.5954 13796.3795 510594.9468 52373.4629 13823.2923 28358.9734 14278.4779 14278.4779 10310.4706 108608.2231 8633.6999 89686.6963 14768.5451 6012.8394 5121.6187 14686.5006 42738.4438 18855.5335 24661.6772 18954.2589 98714.8347 7123.7345 15647.06 16986.9623 4246.451 145216386 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 12921.4568 6646.5918 7726.0426 16074.4497 6981.1544 4400.8524 15895.0322 19562.97 8112.4649 148428.963 8008.8581 11942.2451 10319.9929 8743.396 8743.396 12042.5487 28292.8612 10718.8633 11547.5364 11686.4042 13441.7099 8672.1981 5387.7533 14169.1154 13560.403 27782.574 56341.9282 14518.2923 7861.7261 9909.7748 13919.1386 6660.0464 9865.0908 389775171 chitinase Carbon Cycling Carbon degradation Chitin Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 243043.3109 29734.255 63200.6539 166090.6102 112747.9157 33985.8803 134494.9137 202393.3765 91203.5733 118932.7533 151489.471 153136.9735 15931525.6593 115798.4628 245322.0191 457647.033 292168.7729 292168.7729 86614.1923 180386.9203 143765.2067 136332.2747 158482.1781 193888.5073 68815.4467 104573.3491 305014.3294 121368.2238 419885.3978 137688.2371 202165.6727 68718.378 79815.2363 150157.8152 95315.0801 209660.8969 86357913 catechol Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 13337.9296 4775.4826 2834.0064 6217.5855 4523.5524 147149.7312 7864.14755 4255.0831 5037.8448 3284.3362 12303.0737 8455.5296 53381.3652 6043.6327 3262.2171 3615.23675 7996.1604 2778.2375 13481.79555 7030.80955 9562.8435 3384.9843 4589.9841 5428.5683 3555.01815 8950.9205 403746402 catechol_b Organic Remediation Aromatics Other aromatics Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 19716.8609 11091.8414 7805.8901 15128.6986 8144.3447 9839.5463 40784.9155 10807.7346 11048.2179 17032.76 6702.0488 429586.0883 17236.9237 11857.8291 17657.7076 7773.7403 7773.7403 11196.0022 19731.1714 14399.018 28273.4734 19026.9139 16199.4639 8883.1148 20202.9384 16850.2106 9296.9702 40650.6855 21775.9054 22635.2922 9179.6362 10235.5968 11639.8729 7044.3643 19188.0683 10956993 nagg Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 151549.4018 86805.4803 41426.3633 27245.0007 241846.3092 7489.9582 32173.1026 88764.7208 144962.2044 19369.9819 67301.8775 38450.4421 709839.0156 42883.7639 46934.652 31258.5975 30002.7433 30002.7433 21900.0668 46267.1795 56044.2497 73118.4015 46186.9806 46807.5793 74260.1265 27457.9267 48591.0927 56155.7064 80284.9814 47342.6653 38603.301 21000.3547 32139.6619 24866.2557 49497.4986 67600.6767 121603527 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5567.6411 4398.4094 14959.7046 10769.0786 5445.1269 5888.9595 5526.8064 4418.4333 6198.787 5297.4508 187029.5883 9245.4823 9062.6567 19030.082 9761.2981 9761.2981 2929.9558 12908.8626 7993.4614 5397.2287 103433.764 3104.6312 4149.7703 10736.7163 5030.0138 18597.9255 8506.9353 14151.5545 4252.6068 6058.6151 13604.6077 3823.8798 5712.8129 364004626 urec Nitrogen Ammonification NA Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9079.46 29293.7719 11714.0464 12608.3263 5702.0716 5853.4664 3317.5686 9254.8161 3498.9561 132007.9651 6838.2593 10598.5133 9540.1716 9955.0629 9955.0629 4940.4876 8662.9264 8183.5435 6323.915 9730.9755 6547.573 3857.4379 5871.6902 10676.0077 3848.0227 15727.6406 8529.9686 10237.7515 3050.7344 4941.2827 5205.6452 3109.0596 9143.2858 225194049 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32159.5243 23771.1762 21185.9928 45245.6781 37677.3007 14951.4258 38407.3669 20452.5778 15902.764 28265.141 40997.0761 14991.7596 550924.701 38343.0005 32020.3028 34421.5068 21300.5196 21300.5196 20666.6042 38339.8646 27151.9158 29966.9301 35630.3794 45737.2383 15462.7193 18330.3463 35292.9058 13066.9436 54458.9243 208671.5344 34480.401 17150.2091 20214.9255 18515.2357 14514.1721 45772.7474 262084849 arsc Metal Homeostasis Arsenic Detoxification Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 4220.9642 3862.4396 74847.9908 4377.2611 3710.7641 21357.6052 4027.3043 3117.5441 2519.4529 4355.8709 254970949 SoxA Sulfur Sulfur Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 4834.5431 22249.2533 17371.9975 9151.4258 3965.5307 5991.963 24281.2453 154778.584 6697.1365 5618.9798 5082.6699 7256.4845 7256.4845 4306.6822 18714.7493 5161.8311 6474.3695 9790.4908 3781.4132 8501.9498 8348.6345 2761.8343 29792.9685 9347.2765 8631.7677 4723.9095 4804.0188 7762.5953 2803.1298 15496.4852 37731823 urec Nitrogen Ammonification NA Nitrosomonas cryotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 4634.6762 3915.9029 2430.2217 7128.1735 3291.9109 79161.539 4127.4765 4748.4715 6146.0954 2172.4218 5382.7204 7747.0247 4760.7631 2383.3322 2642.1677 2724.5321 2456.2864 5615.3465 163736273 xyla Carbon Cycling Carbon degradation Hemicellulose Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6248.4749 2341.6732 3797.9599 4324.2188 77547.8359 4797.7912 4218.0554 4218.0554 14278.1716 6208.789 3004.1328 5167.8325 10253.4202 4091.9281 4937.2625 2882.9785 3658.407 2335.226 237858243 GAPDH_Parabasalia Other Phylogenetic NA Macrotrichomonas sp. GfMG7 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Macrotrichomonas; 1014661.7885 39110.6971 49515.0772 83134.6603 160903.5898 26603.1408 130799.3129 687908.2859 32216.0327 52947.1037 59867.3075 61823.7178 1997870.7457 81980.2457 104563.6084 102638.8155 99522.9558 99522.9558 471730.5196 621964.6905 53630.685 203401.4098 62979.7556 93058.8522 64545.4265 59763.8182 88484.142 34573.6878 101380.7424 82340.1772 80434.9454 33939.399 385640.2668 65718.8328 405185.194 76503.8802 18034301 dsra Sulfur sulfite reduction NA Desulfovibrio fructosovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4244.3209 4680.7469 7199.328 2386.8134 2354.3549 3815.9045 4412.2599 61160.7589 4338.6102 3564.1149 22253.9138 2586.0899 2586.0899 10243.5421 14448.4223 2184.2569 5498.55 4639.0696 2620.3317 3693.4582 580822 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 94395.9153 60921.2782 116927.7414 256493.1588 29726.5511 32606.8053 109459.544 42577.893 35435.4488 62448.2194 59284.7442 325790.0386 23249.2271 92477.9997 447322.8775 60781.6869 60781.6869 54132.6823 64781.3398 51025.2738 57910.1345 64857.1162 96715.5676 52075.0847 52966.8884 55242.1831 56133.5454 216011.4266 58295.3065 127840.9414 38175.5871 97187.2437 83668.1357 41826.2654 30521.6654 410089116 nitro Organic Remediation Others NA Pseudomonas viridiflava UASWS0038 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas viridiflava; 6011.8715 10454.6366 16501.8321 7563.9428 9623.3263 81042.8515 4919.1845 6003.2188 80635.0169 80635.0169 5808.5768 7606.7813 5442.6628 5996.9437 3250.3749 3092.2876 5076.2448 12004.7998 15779.0619 3888.0298 8223.2118 10142.739 4294.8568 7477.2668 1898.7401 5346.5166 151581235 nifh Nitrogen Nitrogen fixation NA Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 3935.7411 3819.3592 2980.1262 2235.362 3513.1903 4279.8952 3149.5732 106768.8616 4755.5053 4430.5852 2759.2376 8979.4399 4609.8677 5614.3071 6899.9752 2404.1633 3105.4028 5188.4381 3343.0367 4397.6307 4815.0915 3577.2232 9727.9511 3078.6768 3853.8645 5622.6188 260779507 atza Organic Remediation Herbicides related compound NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 10361.6935 5133.1948 9914.7027 3166.2838 9599.2258 5852.0536 6322.9812 4183.9549 87351.0434 7032.7883 4576.2168 4711.4129 3825.3349 3825.3349 14833.5698 8825.469 10724.5951 35395.2869 13241.4699 3090.9877 9409.6705 9837.2086 2898.9594 23171.1638 8683.1163 11681.5421 3014.6393 7017.1616 5195.9201 5404.4767 12962.5498 51244956 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 12369.4874 17515.7641 11677.9909 6062.4124 30728.223 21822.5057 10539.8629 30247.4468 9132.0652 488920.1851 17191.284 10408.9641 23642.5359 12160.7824 12160.7824 8934.6573 20895.3757 21275.4189 11395.3296 19991.6652 15852.4471 8744.9181 6689.4129 19852.1209 24111.9967 48607.7563 14464.4409 17113.1538 5913.8352 9799.1559 14388.4989 8471.7218 12306.9337 73763054 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 148861.812 103336.6239 79487.7348 53522.4064 121925.0417 28263.2464 154078.1372 72828.9626 61002.0189 112510.7406 71354.5184 2743025.4257 319226.9417 83922.5291 140748.5309 83815.2391 83815.2391 149055.9946 138858.6296 88887.5318 211826.7318 141882.161 538477.3821 122902.2348 139075.7964 132342.9387 90139.4974 186525.6014 129194.9447 109473.1209 165315.6935 150170.9818 119313.3151 78331.4678 89085.3254 302411860 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 182215.0878 10720.6561 54142.6237 7986.7557 14885.2596 14509.5739 54244.5141 192435.5988 17697.6075 30809.4821 17518.8464 190896.6398 53681.5223 26306.8042 12691.6016 13605.8859 13605.8859 14950.0573 137384.9612 17173.6027 38548.6472 28292.7903 22192.1873 13936.8373 26735.3311 28601.393 10037.0111 86513.4334 25166.9898 31945.1684 12831.306 13322.645 19878.4769 28239.2814 14867.8194 295106727 ppx Phosphorus Polyphosphate degradation NA Gordonibacter pamelaeae 7-10-1-b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 21741.2637 5645.336 4213.7123 3883.8717 2705.7467 18843.7399 2888.2298 9519.7703 6238.2532 8485.3955 3920.0341 3920.0341 3608.0371 16812.1472 10351.2702 168067.4483 7812.5207 4168.9539 12241.1226 13258.9179 5733.1776 13535.9803 21349.1568 7843.3781 3796.8739 3747.1627 7497.3306 2586.6593 5220.4766 154246680 trzn Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 21081.9913 18336.8795 17719.9632 39307.1105 19051.9982 18066.1988 11875.1153 8274.0902 15979.1802 25609.7124 10582.7689 402085.058 19322.578 34791.4493 20697.0276 31452.665 31452.665 15398.6354 19719.7638 20932.3893 17279.3146 22648.2785 28080.1914 10060.0603 11748.605 26200.8644 9663.8268 37659.5707 25684.861 27920.7386 12213.2997 13765.6253 16788.9512 9764.4531 21144.3076 327541113 linb Organic Remediation Pesticides related compound NA Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 13154.3977 2976.4403 3891.117 35186.4712 52340.4127 6815.7498 2980.5953 22235.0981 4146.8165 31222.3675 5499.6341 6150.6169 20734.7861 7955.3917 36554.8957 9750.7046 4686.4035 5774.3968 2823.7458 4325.9444 3528.2281 5187.817 10942.8737 258543743 amyA Carbon Cycling Carbon degradation Starch Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 86475.5191 3002917.5819 12788.9952 1793667.3814 12625.8821 190976.7756 30294.0352 27444.9247 20437.218 63304.9174 50946.6527 1106674.0231 169278.3579 25753.7807 26622.0337 44692.5461 44692.5461 342602.3971 430339.1336 54974.1641 31342.5819 52739.0061 467310.2627 67649.6978 55017.3823 46369.2415 109153.7881 186994.6684 130174.0376 90693.6379 73036.238 122533.533 103654.7879 73145.0133 373381.1549 238762692 urec Nitrogen Ammonification NA Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 7064.7296 25009.435 12682.0965 2766.0706 6263.7893 119392296 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthrobotrys musiformis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Arthrobotrys; 184462.9787 45384.2574 71391.7832 168466.82 208295.8072 42776.3301 72801.9864 183974.9841 86364.055 88324.0764 141178.3484 94730.0102 2554998.3704 372243.7394 204874.0712 311339.6858 165081.3346 165081.3346 62301.4045 295001.4555 50487.8741 113008.2124 254858.4711 81586.0473 109091.1008 126721.6494 156693.9243 118523.9299 1035482.4103 164068.9413 109734.3358 55808.1742 93288.8241 125920.7966 120463.0304 310852.3574 163261663 pgk Carbon Cycling Carbon fixation Calvin cycle Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7150.0692 6581.8562 12584.6459 4112.8869 284272.1318 60224.3996 19260.1838 17121.8032 37315.4405 115747.1697 11515.4559 7284.489 18047.4865 10234.9294 10234.9294 4578.4566 16368.5336 6531.6001 5305.5502 12198.512 46236.3272 19186.965 10465.7512 15494.8608 4140.7076 20144.1104 11015.8856 12939.4906 5933.3682 7072.6144 12540.3244 5810.5545 9727.7599 319750453 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 12524.8756 188011.2133 28086.8501 7309.369 17651.357 31968.8754 45216.2777 14155.3877 4540.4545 8178.5686 14715.7224 9599.5517 288630.1304 29915.4129 28095.5674 16836.7019 76364.4879 76364.4879 11186.0976 30582.7245 13484.8313 10159.7602 19135.6558 60436.3537 8978.6197 17342.5222 21650.8175 8653.9787 32402.8853 19976.9318 34463.8193 8207.0688 7451.0963 25138.4184 7643.9686 13023.9586 71083242 tktA Carbon Cycling Carbon fixation Calvin cycle Candidatus Pelagibacter ubique HTCC1062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Pelagibacter;species:Candidatus Pelagibacter ubique; 20115.7694 10979.3004 9385.9309 16022.2729 22924.225 9457.8079 14471.3486 19365.9325 12634.4406 12247.3751 8519.8231 454177.7107 18885.9385 40153.6972 17677.9541 11157.2633 11157.2633 15008.7094 25763.0123 26734.0611 86767.5241 27379.1578 19091.8517 10569.6003 13847.0026 20910.4111 7824.8693 33777.2261 44692.4031 20337.2791 11374.4533 12500.3199 27086.5674 13034.1955 22005.195 271500776 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 3898.7891 16611.6151 7404.0068 14497.5564 2588.4669 4037.5867 5548.6408 4032.3075 107308.2802 6577.4804 13989.6174 2415.3456 2415.3456 3035.9478 6727.8939 11890.1688 8918.1041 6600.1874 4657.9358 2221.1239 5640.0545 3546.8534 11962.8061 4905.2038 2292.9296 2502.5736 4606.494 2169.1129 5410.5071 313679187 fccab Sulfur Sulfide Oxidation NA Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 4964.5896 8432.0012 6474.1242 20468.599 9487.4841 2401.8184 101413.0736 5367.9932 3488.5044 4689.896 4689.896 14886.5422 6278.3662 6720.0346 12198.3552 17392.021 4218.7243 3717.4615 7393.0566 5500.0755 13644.4351 6912.4825 7946.1097 2624.3493 3491.3779 5347.899 2238.2288 7666.9887 389863241 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 289690.4667 16012.7955 33526.8511 46022.3158 66355.2928 77943.8462 70978.5324 62477.7386 66670.7878 65421.9242 58399.9235 3751152.5508 123099.4857 150287.1419 170822.5159 109331.3908 109331.3908 47572.5677 179287.2116 44530.0015 119127.6831 94603.3698 58765.0639 86230.2128 135915.8003 312886.4809 54243.1949 49107.2664 93494.3895 83527.4792 54309.8253 67607.017 84848.564 71442.0746 296431.0737 226358207 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 8456.6773 8694.5506 5584.2613 2692.641 2850.3215 3373.7302 5956.2635 8466.841 7068.0067 110876.0015 6637.5875 6552.8872 9183.7479 5694.5611 5694.5611 4794.8525 15595.4806 10235.7732 16287.3323 19404.1484 28500.7316 3094.7181 5537.6044 9902.5028 4861.0922 16675.3802 4149.0348 10976.6078 6241.9953 5994.8266 11951.3091 4829.0015 9531.2159 129279124 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 61145.3515 35398.8286 49065.7534 33659.8648 23698.8284 29847.8399 20109.0761 24696.5878 43544.5285 23862.9013 598142.6729 47784.4753 41935.3172 28135.3096 22583.5798 22583.5798 18782.0914 51383.2944 27171.6866 25510.3024 38948.556 41853.8529 25553.886 25180.9839 37492.1437 26925.2259 55510.3093 36648.5726 42607.3602 13854.8363 39730.9961 34809.0244 35575.0524 57153.5367 111073795 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 68724.508 157769.4284 23411.2182 978967.109 10265.2277 99693.1994 20607.9095 114530.7602 95577.15 20229.522 46336.0461 346625.392 94352.512 87198.4008 283902.663 66918.4855 66918.4855 49043.0176 50500.4698 23659.6584 111256.1456 73863.3097 89890.6162 79368.6272 45658.6199 76583.2858 89138.6166 76368.4722 86642.7016 118910.584 56437.2959 25767.1189 81324.0863 57274.0057 349537.5207 162072856 dsrB Sulfur sulfite reduction NA Thiocapsa marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 3684.5387 12508.9825 24711.5857 7163.3167 2456.84 3355.8289 4090.0873 4090.0873 6843.1989 4532.5442 4825.6174 2534.3005 8577.9604 10694.9327 11773.2017 5454.9237 6012.2311 3537.3841 3130.1535 2358.2629 166865142 dsrB Sulfur sulfite reduction NA uncultured Desulfobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 13192.0945 14243.8466 7225.6019 11037.52 23650.7643 18202.5912 18448.2272 6322.9305 15753.2068 12072.8567 12483.4276 10404.0577 249489.5814 9805.0577 11407.7056 10238.6452 10151.2529 10151.2529 7468.9969 22998.6316 10278.3933 8396.6257 17057.7122 21371.2739 6388.1937 11875.3064 21132.9792 8756.46 35452.5569 293190.2505 29341.4155 25556.7847 9257.3579 10738.9122 7615.7787 10107.212 328811735 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 7661.2895 4854.262 77047.8387 41093.9702 3422.9024 3422.9024 5940.0669 2520.4969 92075.3935 7764.6769 383318591 nifh Nitrogen Nitrogen fixation NA Methanocella conradii HZ254 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella conradii; 5509.8644 7971.0367 97297.9421 9826.1224 5253.4165 4149.1478 90507.0841 5152.4368 18137.6084 18137.6084 8098.8563 5778.0373 3774.9723 19928.4794 7353.6527 4898.5803 6289.3089 20117.4491 10494.4837 7250.4704 23092.6353 2983.5369 3209.2892 5274.7731 352117915 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Natrinema pellirubrum DSM 15624 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema;species:Natrinema pellirubrum; 18672.5937 7516.4546 19033.9161 12174.0603 9740.0385 33385.5733 38248.8363 8523.9745 7123.9968 21298.1307 17976.4321 221728.6466 39186.1182 18469.5169 33863.3986 24612.6025 24612.6025 8936.3856 21114.2755 15360.9654 34857.64 26334.6132 14157.1677 9928.1932 23095.6149 19423.023 13842.8056 27667.0582 25157.512 24661.3878 13762.2037 20745.586 24840.28 9218.5652 7408.2442 33668161 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces griseobrunneus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 59010.4262 29311.1276 19030.0097 3200.9685 7148.4286 24373.7002 25119.3001 9779.24 9495.8555 69353.5605 16510.5082 17103.6189 3896.2144 10427.6128 10427.6128 5549.5249 24299.5749 9972.2892 8274.8761 19536.8579 13097.0812 5311.9651 6392.1081 8196.9481 5322.2864 24123.7674 9114.1876 10913.3975 3218.9446 27342.6543 9858.5846 3803.161 6997.6688 374424438 bphc Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 252918.8868 14716.235 18281.3355 38371.41 47440.952 35389.5641 34995.0978 31906.2291 166365.3651 194363.9665 184079.6801 89563.4706 584014.6489 119881.2612 81974.6272 89097.533 50527.7111 50527.7111 44023.7612 48101.3652 32079.488 55830.7806 190535.8486 59923.1294 21536.4503 30537.284 49929.8112 27057.0052 84811.4947 53421.7087 75154.9992 14229.5703 31771.0597 55082.3421 22271.6534 63330.3434 121714210 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 12311.6433 18511.3999 127391.1132 5635.5576 7522.9028 4047.8472 8407.0332 13118.7641 5691.5083 239071.6786 9675.0043 11415.2279 10164.0701 6646.7327 6646.7327 12682.163 18750.2593 8903.1731 16094.1317 13390.1402 70671.7271 6857.9639 21021.1324 16159.2053 8907.4231 16955.0378 5449.1618 10586.884 3867.2336 21129.345 7808.8789 7462.2626 14949.7526 359772622 amyA Carbon Cycling Carbon degradation Starch Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 7716.5499 5636.3445 5173.8641 8483.7718 6747.5189 7894.6951 7704.6569 6208.1115 6454.979 7709.6178 147015.0218 109572.7572 18140.7933 9831.2603 6020.5892 7102.5695 7102.5695 5080.367 19179.0605 7555.6398 7811 11896.142 21410.0102 7064.4389 4456.7602 10755.2809 9148.6358 15969.1697 21202.2479 12073.68 6411.6826 10362.235 9806.6547 6225.9868 7997.3864 149200797 phn Organic Remediation Herbicides related compound NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 150783.3248 29746.68 213712.7199 384097.718 169013.3351 65347.0415 234897.4235 364822.8862 153084.7842 188973.4802 201317.8153 174978.3364 3257793.272 112780.9576 134327.6258 428594.1589 200300.2993 200300.2993 158229.4761 228288.1498 164571.2678 185891.3154 266508.7327 96452.6724 121998.1919 171700.6272 175212.5766 151309.5828 305853.5534 144833.4347 188243.8384 56752.1516 103570.3005 269818.7766 79322.1493 391602.1883 344318441 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 50265.6036 16666.9352 4594.6775 21301.4203 43440.6231 14289.4869 11968.9527 35004.7461 30663.7205 25450.082 192959.7656 20902.9514 30079.0101 101112.1991 41860.5202 41860.5202 25309.4205 42702.711 44449.8435 26940.8841 59435.8562 864344.7164 9304.3757 52846.7249 22359.799 18023.6788 104732.6083 60584.8749 53804.8542 27772.5741 43775.6637 65794.1953 88800.0359 23889.2933 352100617 poba Organic Remediation Aromatics Aromatic carboxylic acid Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 5987.6992 8246.4754 9365.4803 11950.3173 5085.0279 2624.9876 9310.5061 8481.02 8181.9683 59434.3645 4474.4374 8029.9778 5782.0101 5684.3522 5684.3522 4274.5872 13654.1379 7100.3629 4593.7193 4975.099 3785.3512 5943.7651 10691.1385 9483.9777 721117.0511 9773.3732 10582.0399 7277.219 7025.9018 5750.1996 2917.7397 17291.898 210627070 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 5984.1332 5779.1541 9888.5502 3984.6686 61077.0033 3264.3379 5159.6754 6782.2909 3655.8739 129477.4709 6752.6153 6704.0413 6690.1092 14212.6618 14212.6618 3783.772 12589.4915 7726.5412 7965.6692 4685.316 7147.7884 7350.6342 4822.8311 10553.4081 3599.1649 13702.7851 9170.1817 12757.0854 4102.8513 4555.8257 7965.4695 3116.051 7678.4282 28855617 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 4776.8153 7991.4487 4690.6605 2983.7764 6255.7758 6002.135 2782.0896 88729.2536 7002.3009 5422.4916 5613.4436 8107.2121 8107.2121 9103.3907 9794.9078 7107.6908 7285.4197 11075.7876 28576.8448 2790.6083 11549.5351 4096.4093 13649.5428 7346.3286 9115.8121 4678.7606 3952.1109 4290.8381 6593.7479 206572688 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3881.7316 5435.7783 5253.7764 6124.9528 3849.1564 14664.3481 3768.9448 1893.9436 1893.9436 13010.9136 6582.8362 4947.4086 6193.4613 4598.4665 3165.7578 3068.1909 7072.0866 7726.8396 8497.8398 8596.0078 5579.4411 3441.7847 4009.4985 6924.0007 2246.3534 15080.6919 225037850 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 64360.3841 20794.9611 48151.6949 58802.3017 42681.6455 24409.6117 68768.1679 59735.0513 43673.8432 45163.7366 80320.6004 48358.1216 1010442.9486 90656.0196 59228.6367 78792.7356 57516.1978 57516.1978 46332.3825 142841.4971 60089.1753 75799.3546 108369.4631 161560.1475 56484.2259 92352.8077 78678.477 43352.6802 115286.3793 60189.835 172616.1511 40631.5665 104539.3989 59418.1526 34339.7452 266533.2059 349781046 FBPase Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 4600.0025 63026.1035 4875.4766 10549.55 3435.2379 7248.553 8355.4185 11598.4289 3573.9711 1985507.7481 5987.4483 6489.5186 24400.2617 25341.7927 25341.7927 28267.8957 7157.2185 7270.2808 8131.1051 12119.4046 8746.8531 5873.3016 20715.8323 9375.1934 8272.3037 4754.5551 5442.9417 8838.8803 23197.5143 194308613 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 4881.1675 9961.238 7583.9108 8355.1285 2013.1905 4395.1282 6620.4096 3634.3391 87985.8087 4938.8435 9969.101 6428.9699 2741.4904 2741.4904 2810.4518 10215.3587 5577.3886 4911.311 6456.709 2901.8879 3856.9473 11190.9626 2338.9105 27274.5285 8812.9808 11372.7328 5598.851 6184.4357 4054.3156 2908.7376 147886208 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 13476.4555 3323.6446 2157.426 2157.426 6403.2703 2664.1862 153838536 chitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 3876.9491 4259.4107 3211.0955 9734.561 11683.6984 4853.4702 4806.1719 2578.4661 160415.2732 4776.4898 4680.3545 4222.3286 7456.8086 5530.6528 4458.1237 4191.4251 7624.4785 2659.8371 6149.6708 4685.1721 17242.9013 4015.8828 6903.6975 2958.3247 4124.0573 5967.2157 2161.061 8310.2197 300832034 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 20_3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 6115.5278 3288.3907 2627.7829 4161.4734 5178.5819 80551.8327 4784.5835 4162.9964 3988.014 6928.0568 5213.4372 4231.0934 6959.4794 6007.0912 3707.3023 3033.2824 8575.8371 3656.1842 12470.8465 7857.1441 3387.7254 3750.3959 4332.3558 2306.2474 7573.6367 77969955 chnb Organic Remediation Other Hydrocarbons NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 22989.713 12048.6745 5469.216 12015.4407 20409.0128 10114.211 20943.492 22934.5748 155953.8418 12647.3539 23382.4936 30568.2448 27351.6005 27351.6005 23448.4309 60624.6979 10404.331 28568.4779 43126.3638 8494.4046 19515.2327 18402.6871 17968.4526 20238.3841 132207.0324 23099.4228 32682.9778 5443.1774 18851.4194 107079.3261 13727.8429 30111.8846 120401613 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10089.2965 48020.7736 158442.2174 4196.8774 6933.374 2164.6732 2514.4581 7097.3252 4728.4036 3537.8926 109572.1485 152548.9644 6728.6784 3725.5863 6884.7565 5761.9311 4830.7367 3257.614 3515.4792 8385.9794 2361.5987 15864.161 7030.2679 8582.9292 7873.5115 3161.8733 6485.2306 2888.8814 7126.4699 365293465 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 466355.4605 8287.8833 23143.7157 46858.6038 104669.668 11485.5079 20599.2323 39823.4403 48094.8519 23653.0511 21019.2546 421462.8582 24106.9974 20307.123 135989.097 43143.7896 43143.7896 10421.1466 57093.9721 15275.1445 85833.1446 33372.9814 60988.1949 13092.2067 20625.1908 21238.9333 13221.8154 46414.5449 32560.5353 30889.8082 16725.4571 21221.8549 24088.1551 19482.6841 69368.952 410370804 xyll Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella oxytoca M5al superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 9093.6396 7287.8006 9067.4337 4215.798 9753.6932 3316.6619 9043.4168 10244.0571 5156.0898 188762.113 13080.4124 9239.939 5442.2364 5442.2364 5784.3781 14257.144 8816.363 9691.5052 10452.5928 21012.5211 4720.5268 5424.8747 10991.542 5271.2669 5633.9242 4806.0516 13280.2916 4060.879 5898.1617 8604.618 3839.4043 14188.0841 339512955 narg Nitrogen Denitrification NA Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 14639.4923 13083.9405 6940.2945 9342.0425 16072.0049 11184.8238 6969.6396 13003.5897 10010.6883 17017.1347 6607.2504 270240.8304 22046.1798 10041.1014 18962.346 15101.7202 15101.7202 9635.9402 23044.6426 12111.1985 18766.3348 21396.5678 36198.5634 7413.101 9704.6969 14294.4358 11778.0003 34895.7611 13327.4324 24568.8266 5554.0549 12573.6856 11612.7459 9002.3713 19442.0447 77378705 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 35850.4082 48316.7766 8842.8457 3067.8591 5187.1499 51117.7894 5584.0883 6108.2208 89851.7182 8706.1057 5707.5199 5909.2681 5149.6015 5149.6015 4065.7928 10561.7969 7709.0136 6311.6074 20693.6612 7017.7226 3293.5838 3613.5026 7890.0668 3934.8114 13291.3095 4238.4065 8237.7722 3529.1971 6159.7221 5641.1295 3854.8192 57701.4994 183581743 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 8206.1181 9522.0963 16492.8507 3879.5357 5312.264 4688.3776 3159.1402 125452.1887 7784.3539 6314.3541 2050.2791 2050.2791 3150.9166 11308.484 7426.6793 4292.3978 9090.0724 8810.8728 3168.6778 3761.3407 6903.5386 3995.0779 13634.923 8816.1527 8870.9846 14152.2301 5444.1689 4565.451 4834.5542 66954.8558 238015689 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 41546.209 10639.463 5897.3552 2724.193 5860.1926 31494.7838 5294.9806 10989.1295 4885.1709 10287.3967 44632.6057 2896.3885 2896.3885 3022.96 48011.9752 4058.2058 11001.6213 6596.2615 6349.5204 6165.1581 5451.6845 9060.3971 6173.5954 12904.3843 16931.1905 9282.9959 8151.9957 6186.8797 21195.5593 9718.1526 260900698 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 83166.8903 13983.1681 51309.7169 105382.0654 187134.3414 41272.2798 53419.9454 135758.1106 122949.9805 57151.354 69144.3443 31247.1937 1368556.0894 72333.7932 236358.7504 1018594.8095 62722.2019 62722.2019 41608.5357 85223.3143 44343.6664 594888.9994 61214.0546 66236.7902 23151.9832 34098.1313 66396.3921 28323.7072 143908.1421 56043.0736 77853.2035 51013.7608 42058.2083 37789.0193 36786.8397 70404.6272 294477346 cysJ Sulfur Reduction NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 6353.5035 9830.8736 5445.6142 7047.0079 4423.3522 10142.168 3842.0268 139227.7392 8937.5592 5765.6275 6843.4022 5093.3757 5093.3757 6789.4251 8068.7271 6514.6618 20120.9603 5889.566 6364.4985 4628.0074 3388.8863 10506.0966 3341.9406 11572.6527 7033.2313 10059.0025 3249.5527 4269.0919 3499.1834 11539.8775 88797048 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 22086.6398 11172.5517 14596.4108 24980.068 17510.0354 5529.9734 36876.6315 21304.2242 16053.8244 19465.4384 26343.7013 15975.6175 460468.2576 30699.2153 25922.8854 19387.0952 11002.3861 11002.3861 17790.1497 43347.3933 24419.6549 26371.3646 29133.0433 28133.6896 16102.3637 12254.8274 30862.1716 18130.0506 51471.7248 26019.3443 37243.7315 17956.7151 15761.9169 20411.6426 30109.2935 34959.5541 121556154 tpha Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 11128.8651 10093.76935 6311.4345 4100.6485 2509.5088 5584.442 5623.4672 308975.3217 7557.9959 8917.9324 13506.36 6173.2987 6173.2987 5779.59585 13634.81875 10723.1322 10380.9888 12342.0478 11766.8445 6685.6723 4578.5234 12589.3402 3074.5394 28743.3695 7097.30425 10222.28825 4794.77 5531.8997 10279.038 12902.2537 84509361 xyla Carbon Cycling Carbon degradation Hemicellulose Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 18235.9816 45960.9444 45186.6762 3265.6713 11573.1145 47096.5626 42739.7044 14200.9796 116645.4255 50222.9753 6095.9874 8787.9198 3631.525 3631.525 2972.0079 22533.7801 6177.8809 6551.5665 14071.6325 6954.274 3599.3743 7458.7424 12671.5442 6229.354 26292.9915 21813.8966 34399.9917 3062.9064 16389.5901 41660.1955 6285.8997 6749.5176 177842253 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 5774.4444 4454.774 11781.3043 5365.0062 3426.6043 5388.5351 6922.082 107133.7004 7418.6861 4761.1972 4595.229 3612.252 3612.252 3979.2573 9768.3 6678.7394 5541.0133 4704.1352 5222.8415 2464.0243 3814.0604 9997.6492 2928.2798 12981.1296 10010.8063 9842.2958 3493.1905 5995.4263 3763.0271 4730.086 67156658 urec Nitrogen Ammonification NA Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 28454.4911 17653.8023 9249.3245 23954.7808 8086.5685 11128.7909 14289.971 7286.2066 12194.4131 20034.9829 11526.1197 236328.5498 14408.4841 12930.2374 12463.763 11127.0217 11127.0217 14649.0204 28250.962 17483.1827 15142.7582 25516.9932 16554.2051 12703.2033 11814.6771 26086.1494 9008.1393 37792.9377 22772.1453 22343.04 15618.3523 22905.1907 12961.5006 19824.7366 664700.0356 111182171 protease_serine_fungi Carbon Cycling Carbon degradation protein Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 211405.7777 69476.3742 164165.5495 71352.4223 151472.6563 37745.2526 169109.627 189704.6639 88796.7125 342800.6346 127789.4621 140304.4535 3400307.3562 207171.4513 378142.4623 325180.9572 210365.0069 210365.0069 115453.3226 205839.733 91643.79 308762.8967 140936.3106 250291.5679 90729.0454 94659.6588 163357.4099 117071.086 263652.0493 99394.0028 137319.7802 187098.1158 145609.7122 170059.9283 152466.0525 768883.399 71919878 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 9881.3173 5969.3182 9611.0886 6015.9092 3069.7885 3407.075 2574.9434 5169.1528 18931.3564 3826.7259 80260.7073 19082.8746 5826.3779 8854.3028 4542.545 4542.545 7758.3693 13289.216 6565.8442 43805.8037 12866.4258 9845.5346 3903.5301 20688.62 7443.9058 4525.7938 32201.9442 5803.7035 8047.377 12160.8524 5805.8101 5937.1411 2502.6239 4809.4293 357428333 cellobiase Carbon Cycling Carbon degradation Cellulose Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 47098.657 1415199.5023 381004.1206 9594.8114 5957.9144 11186.7767 16561.3608 88763.3298 8749.6545 42216.6095 37742.1241 611453.9477 31435.4718 18963.0255 83039.7131 23810.3528 23810.3528 9743.9273 38067.7487 14415.7644 30806.2431 124348.6365 22624.2631 63770.1877 18414.7751 22406.8085 43977.569 56418.5079 27099.9297 69975.6049 12258.081 34711.1902 47840.6504 50416.7356 25767.8017 254506647 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6779.7819 4981.9237 41578.5882 9726.978 3972.9468 6511.5077 4450.6865 5112.1943 6421.0361 4339.0466 4630.7851 6632.9822 6948.877 5993.0481 14513.7371 14513.7371 7933.4201 14016.9595 5257.7302 9589.7542 17037.8792 8717.5124 106385.4936 4657.6363 9074.8658 46348.529 27719.8687 13276.7279 9563.8692 8285.2906 7559.4298 8889.4272 4638.6827 15318.0905 4218927 b_lactamase Virulence Antibiotic resistance Degradation Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6721.6893 4262.8205 3028.9053 5504.0523 4873.8296 8198.0663 2987.2036 561562.8598 4498.9579 6234.1712 3294.1095 3294.1095 2889.0057 4116.5675 5855.0149 2993.7611 9436.7132 2759.9918 8477.3167 9143.8916 8548.2167 4206.88 3813.3625 3984.8778 6250.4117 5740.7533 71038612 cysI Sulfur Other NA Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 12894.3536 9466.6655 4528.1716 6341.5367 6465.7819 4039.3432 9571.7541 15694.6551 30879.0118 154728.3417 9499.7779 8931.4927 10588.1704 4659.3031 4659.3031 9379.3255 23651.4236 11745.6686 15925.6789 12037.2736 13526.641 10504.9302 10330.6439 16931.6474 5520.5542 27557.8231 13411.7827 14382.8068 5585.9119 12130.5417 9313.8164 7124.1309 17436.9196 345864396 SoxB Sulfur Sulfur Oxidation NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 12067.471 7211.0645 14816.2079 17271.8747 11370.904 4422.348 8501.9791 9010.1199 7546.4647 167424.661 10056.5237 16619.2916 21962.9632 9581.9246 9581.9246 7462.9179 17745.2363 9747.0172 16439.7875 52221.5617 14885.1138 10841.3775 6965.1632 11445.4956 7118.1107 18522.0671 14152.9893 11887.2144 5757.0111 8759.4323 12596.9194 7125.8894 17168.5415 292485872 nirk Nitrogen Denitrification NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 10699.9788 4289.308 5852.4613 2837.9955 13968.1755 8516.8102 4206.3634 56302.7821 4279.7564 9463.5988 6343.9332 11074.0821 11074.0821 3842.5993 9305.2699 6266.9533 6705.1635 7355.2225 7417.9253 4360.0011 13530.3736 7598.8468 11896.2152 7725.6664 9444.1823 4901.1618 4724.4473 4914.6561 9901.8627 8083.8201 146191528 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7256.8323 6032.9009 2224.005 2894.1369 1935.1791 5216.3431 9362.2486 4426.0187 194727.013 8557.2963 6702.1585 2938.9017 2938.9017 7608.8966 17647.1334 8209.4828 14518.9902 15961.8684 6246.6349 4585.7946 5649.6518 8177.731 2907.8717 21436.8599 8577.4503 13080.6967 2962.8588 9747.5702 5682.4986 4737.7475 7966.5955 117607501 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 11432.4013 7159.7573 10745.7243 3668.7663 17018.5709 5443.8656 18487.2118 60447.3212 8510.207 7304.8552 6198.8627 6198.8627 2709.6111 8371.4574 3727.0646 4781.108 2360.231 39984.1604 12954.3023 4923.3472 19410.8704 3216.977 3351.2164 3767.7119 391355190 terc Metal Homeostasis Tellurium Detoxification Desulfosporosinus acidiphilus SJ4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus acidiphilus; 9932.879 5839.2323 182956.4408 4215.9799 4052.3284 2846.8041 5230.8053 5306.8774 3478.7675 6996.9657 6657.9221 10485.2426 6264.6068 10206.7586 7837.8203 3246.9978 7048.5354 11461.8254 7546.6967 2142.591 3421.1503 4494.2048 2515.9636 13264.3956 363420760 amyA Carbon Cycling Carbon degradation Starch Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 31085.6296 10669.867 17663.4174 37839.2406 50071.3903 6338.1903 90356.666 25972.4309 32087.6893 57493.8238 37720.6426 33938.5121 8598988.8934 161768.2405 31362.3735 20941.9828 20530.2655 20530.2655 37576.7025 47702.0168 35189.4409 61440.8502 35549.3042 45463.9874 24744.1951 25074.7662 38491.3845 56936.3585 64918.0693 47296.5648 161041.4371 20012.8327 52796.3544 35690.8113 22185.7938 51046.8562 86360333 cmci Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 9181.0821 8151.4067 9792.3663 7278.7609 4243.2152 8686.8779 8666.2718 4641.6686 230005.1052 9010.9755 10375.2393 9699.0616 6435.44 6435.44 8569.1779 14939.9696 13022.9767 72081.4474 101978.0944 13014.7994 6178.6807 8587.1934 17204.8574 7969.8994 21284.3991 12129.5862 18157.1321 7052.9616 6623.5712 8773.0604 9659.5662 18779.6326 50954654 terc Metal Homeostasis Tellurium Detoxification Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 11451.5589 4534.2072 7889.5001 2389.5426 221349.8065 7337.7213 4389.5789 142984.6645 4599.6201 36695.1271 499054.978 19011.9281 344150.1108 4199.8222 5741.7611 5006.0419 3712.2224 4993.2071 12502.5499 4404.4938 8718.3211 7859.908 10685.9294 1951.2451 5124.5413 7686.4775 11785.4812 1479825.9328 261746626 xyla Carbon Cycling Carbon degradation Hemicellulose Leptotrichia goodfellowii F0264 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 5002.0508 2514.0489 2351.8305 4736.2554 4052.0959 2487.1075 6167.096 5267.9087 2597.4058 2597.4058 3794.1577 8297.5637 6128.0372 5334.646 6146.4018 12147.5516 3139.6173 3103.7665 8221.928 3304.6064 10992.848 8777.2152 2982.0102 3156.006 4861.173 2937.2605 6921.2211 115401280 rgl Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6089.588 4391.6777 329954951 amyA Carbon Cycling Carbon degradation Starch Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 4737.2963 5574.1553 14551.5134 62680.0029 132984.6662 32930.2141 7416.9936 5577.4945 7746.7333 11283.1411 59964 9197.2969 7066.6344 10195.3884 3173.1035 3173.1035 4456.7934 12898.4512 6395.8492 5123.6636 6305.6603 7543.6916 5692.3324 4730.7897 7325.3139 4577.2296 24767.1813 5421.0433 11185.7254 5549.1456 5648.1005 8219.2966 5844.2594 4588.993 39974471 pme_Cdeg Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 136403.1323 37411.1573 18216.1731 171387.5327 11681.1884 26646.3164 160734.2952 70278.9389 34875.9953 76210.2663 108543.2356 1314422.5441 112595.5352 131851.0325 52647.8795 291671.5125 291671.5125 88563.0598 132249.965 63500.4878 51862.0972 94266.6527 108818.4649 130364.3912 145673.7471 88995.6697 91375.351 1223632.0594 115591.1228 165914.374 121877.0809 71424.9878 102771.8654 149154.4835 102577.3909 52549490 dsra Sulfur sulfite reduction NA uncultured archaeon GZfos27E7 superkingdom:Archaea; 4381.535 5987.3949 3417.5396 4544.4454 118270.6418 5356.0357 3465.7693 4085.2786 3552.6114 3552.6114 3006.1952 7714.9985 5176.6911 4774.6978 2797.6873 6573.4931 1909.1256 2453.2832 3500.7655 3082.7273 4827.5974 149733872 endochitinase Carbon Cycling Carbon degradation Chitin Eubacterium ventriosum ATCC 27560 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium ventriosum; 10832.1158 8046.4125 4536.3376 4171.4888 11334.0735 5401.7635 5406.2694 2858.055 94550000 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 7337.4711 26190.2415 373876.1834 8462.1335 19149.3898 11096.4913 2305.2186 12683.5982 11701.1031 10352.2369 418797.4345 14080.4126 19030.0852 15390.1083 11724.2245 11724.2245 4730.3224 38781.0687 8686.8803 28918.9118 4424.9436 21210.1754 2136.6453 31453.7658 30256.9105 28650.8879 39754.0689 61254.0726 20817.5376 53816.988 20866.1283 12822.9635 13647.9775 5097.2389 161579539 ppk Phosphorus Polyphosphate synthesis NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 49157.1288 21859.4442 167351.4187 49094.934 35978.5298 10846.6537 44649.521 117419.814 31169.9232 100954.2498 87466.7887 148506.1172 1359101.2892 65840.4063 365589.877 1703179.7151 65739.1518 65739.1518 30512.5245 94705.784 74715.5492 724066.6016 78402.1751 163477.966 32383.4874 40355.564 55847.9007 60959.2198 114785.6092 70166.2593 93241.4977 27147.5542 56883.0608 46722.1606 82842.2689 335932.3442 118618410 sqr Sulfur Sulfide Oxidation NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 11949.1697 6225.3576 5454.9309 13676.7999 6216.3027 4846.0701 5337.2112 2666.1782 5248.8566 7510.9828 3244.461 270255.8689 6613.0301 7625.487 5065.549 3426.4423 3426.4423 17878.9105 14254.467 9973.9773 6889.2436 9556.3122 4323.8058 3887.3348 4343.5179 9701.3584 4355.1273 15073.0525 4875.9707 8925.7285 3461.5949 6619.2985 5297.7547 4404.9622 11815.7278 145593359 amyA Carbon Cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 528448.2033 30531.6209 13487.1655 19333.9281 27039.5429 10373.5072 4438.5229 118775.5211 19332.7929 8073.3961 311962.158 11080.6107 23845.8352 9617.3593 6767.5875 6767.5875 7535.8103 39481.7565 9709.2162 16368.0137 15428.2076 19207.8574 40790.1646 7323.6322 41688.7156 10582.8586 25187.4751 26356.5355 18371.0179 10433.6762 9702.6752 11697.9009 13089.6434 18986.6296 389879173 ppx Phosphorus Polyphosphate degradation NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 11387.3479 20162.9778 29191.739 60605.662 16395.4438 4660.999 5942.6668 8124.102 5906.4994 189603.8844 6785.9275 8718.7257 14651.5962 11015.6903 11015.6903 7333.8251 11149.321 17368.9668 4336.4284 4942.6301 7047.6028 16224.3498 7914.157 23287.9169 18974.9528 17819.8202 4820.9258 8928.1901 11613.8773 3713.3306 8516.911 88863773 TIM Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 17002.8381 20461.6229 6414.7986 17330.0756 7659.9792 10603.9309 16084.5908 18518.3983 12969.9588 14816.1607 19647.8531 557616.6049 24379.4316 31817.2043 34895.9179 20699.0072 20699.0072 13304.3615 31326.0448 14936.9466 26588.1882 242331.9686 21240.1254 14000.5981 32713.6439 19180.6128 26540.9208 47527.3817 26496.2024 22798.2027 16700.7177 32325.0532 27198.3301 9940.2781 23473.8277 319993980 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 97913.3728 15624.2866 70755.3073 49035.4922 51350.986 40329.4535 48750.055 54218.5036 112202.1002 56719.1419 64071.1087 46616.7044 1311065.7341 92311.0761 126006.5337 93839.6226 69293.708 69293.708 29207.0354 79316.2395 42128.6782 97216.059 119651.8639 145956.4806 200630.3919 140387.6155 63266.1859 37109.4793 143981.7762 63072.6096 67551.3923 49722.6701 42604.1435 54547.6218 25748.65 109848.3929 218680146 endoglucanase Carbon Cycling Carbon degradation Cellulose Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 11201.2084 17958.4882 7018.7396 8606.6126 6310.5866 5323.0513 5542.4504 2420.0848 11065.4289 6571.1041 5419.5325 114798.005 8586.3088 10208.1607 8894.3474 9091.964 9091.964 6252.998 83668.9904 8810.2183 5025.3107 10308.5993 7128.033 3738.6702 5017.1268 12316.9269 8183.5291 243471.6054 14494.9394 16294.8894 4253.3625 5728.341 8970.6273 4863.6853 745108.2806 357401828 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 20805.3272 15428.0439 22379.3973 18890.0434 4325.2625 5792.1603 6334.5947 10074.3195 6576.3104 7805.5456 118194.7774 7768.1454 13049.1423 19102.3698 15965.5722 15965.5722 4506.2632 14729.0829 5447.0142 37453.8326 10285.1139 6174.2579 4406.8054 8080.5139 10890.528 7419.7039 21223.9817 12544.9913 14461.4515 10605.5786 8786.2584 19520.2275 9849.3385 12048.6895 372477147 urec Nitrogen Ammonification NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 9907.2632 493228.6189 103041.4537 26926.0907 22850.6193 22678.6511 8197.4461 9390.4352 5943.6419 9013.0791 9145.9028 7242.5118 229043.7311 9538.2183 13228.5172 9723.947 6002.5987 6002.5987 5788.5148 19254.3134 9712.3072 15394.2173 12602.3084 11936.9089 5343.8237 6486.6166 19999.3239 8559.0221 28456.667 19674.4998 17065.0406 8572.6477 9135.6188 6923.7431 6102.5194 10816.336 383458362 gdh Nitrogen Ammonification NA Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 5291.9458 5090.2283 6648.3398 5759.5758 2492.7538 6985.9588 5022.2899 4467.3397 3469.3197 3624.5225 12192.3738 4292.9544 4292.9544 2632.3929 10334.0628 5171.4751 3792.2871 5944.244 4748.2825 22108.9525 2585.0836 6800.4525 6292.7118 12742.9286 3987.8886 8479.5997 4200.7881 4303.8251 5143.719 3253.233 4901.8119 398121174 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4272.4754 3282.0894 2529.8294 5900.4875 4253.0792 7111.0415 3024.9219 5051.6587 2265.8219 340793642 amyA Carbon Cycling Carbon degradation Starch Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 309128.0675 14665.4351 56726.2128 64637.0849 45250.7578 36274.1291 67007.2242 75742.5168 85931.3211 54424.8643 87856.1466 107348.6217 1585487.0174 63842.8839 91257.8387 78818.2566 77691.6042 77691.6042 45180.1761 151479.6248 82683.0059 110726.6113 230876.7045 67918.6656 65164.5165 64806.2545 81305.3295 80041.0106 141611.99 35857.907 135148.1584 60303.4789 61335.3664 104663.5414 76919.0817 105457.7356 323530582 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 24899.0818 17692.368 8225.1977 15161.1671 10424.1169 6559.0818 7229.3142 8633.4801 3673.409 201343.1798 10073.9095 7913.3844 6244.7263 21894.2003 21894.2003 37006.093 17217.349 11563.034 117682.493 18434.5232 130962.5073 7531.8282 6384.3167 10789.6211 4482.3591 20402.928 7447.5644 13962.1167 7633.1792 7634.5769 7531.5731 6802.7987 38542.2296 32895236 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5124.8017 689760.1169 4934.0768 34111.7179 15346.4446 18151.7405 10170.0918 7403.3831 12382.9265 6443.8278 153075.8445 14475.5113 4438.7899 8146.7051 8146.7051 3465.3822 6520.2578 132891.9903 2907047.6309 4270.6076 5733.6127 12618.5076 9404.1665 11810.6558 8852.0171 2227.0648 6437.2547 10641.6255 94471347 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7623.0397 5900.4382 5783.2007 7852.496 2294.4159 4939.4091 25766.5652 4988.9204 5356.0692 5351.3142 127095.3599 5876.5738 14192.6513 6121.7556 12953.9898 12953.9898 6753.7156 17822.9241 19548.1907 8950.3172 14246.0008 6858.542 4972.6539 30228.3542 8084.859 3876.4111 15377.101 8852.0333 12906.4647 4158.9545 5437.5882 9154.5237 26848.0372 9113.7538 407376726 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium hassiacum DSM 44199 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 5114.9229 177801.2278 7886.9513 9202.0264 15975.0849 3980.0782 6196.1099 11892.8017 7563.8196 138000.5108 10635.396 11747.5435 8613.0045 8613.0045 39752.6814 15804.9131 5163.7833 98937.1805 10064.172 9043.3905 3620.5789 8736.6036 3556.3114 18076.812 12023.5507 18224.0275 4820.7846 14727.6185 3565.1529 7820.8273 309813044 urec Nitrogen Ammonification NA Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 120491.1747 11935.0829 57429.0107 18216.4041 38374.3334 10593.2426 150266.6964 178834.8419 111195.1636 20503.9579 104185.88 112920.2856 455204.764 41333.8102 51716.2234 225146.2347 26852.7859 26852.7859 23756.6565 63856.4915 32432.3251 62025.7451 33351.7774 83449.5753 43328.7502 38520.6326 38469.2059 244967.8332 173045.2279 48366.2755 66848.8137 68343.6609 46868.5273 54426.0959 48360.4478 50050.3114 346644315 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 97536.9064 16848.0445 700658.3572 104017.8208 96226.0025 17336.0224 98704.4587 78019.5 66199.9029 79727.5657 81266.8685 64606.5177 1833901.5055 75579.2642 94200.0284 93433.5544 71436.9884 71436.9884 54332.7547 129331.6848 55090.863 76276.332 155504.8126 208607.2115 43510.3155 60428.7724 118999.8206 78651.8014 165794.8977 73810.37 95268.5223 38759.4521 75564.9332 70578.8462 44748.8855 253478.0541 29652532 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 384525.495 107990.2402 594060.4628 1587274.5595 680478.7384 82400.0847 470843.1694 384486.7938 265889.4314 187046.3066 349257.2663 262215.771 15091965.8905 374200.7781 381309.8887 496703.6635 351288.2838 351288.2838 174167.5023 325200.4211 297157.302 432750.0646 404934.3452 774448.1469 228212.5221 204937.2572 320321.8611 235189.8167 549443.1471 495968.4239 328584.0238 205876.5048 207351.3103 276971.2758 191596.6876 619906.4066 336010222 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 9738.2905 6000.029 5058.3489 8963.0052 3786.8984 3673.5149 3648.657 14334.4895 11383.7531 4087.551 187193.5901 8141.6813 6862.3888 7721.6131 6236.2718 6236.2718 4909.8272 10559.9593 7344.4315 7762.8995 9860.2627 10416.6974 4237.9828 4575.0135 26745.3504 5033.516 22206.5943 10085.4878 11580.8437 3930.7961 8000.2291 5376.5734 4512.5103 12111.3306 399051035 trza Organic Remediation Herbicides related compound NA Brevibacillus sp. CF112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 8641.5079 4800.7047 2494.461 6557.6113 4222.3611 5185.0513 3306.0527 66538.1799 3986.4637 5491.5677 2603.4238 9339.8596 4564.1852 4302.9504 4896.0175 6459.4408 8378.105 2266.6351 6213.2108 2529.0854 5848.2128 3256.7698 4558.7609 166406453 nirk Nitrogen Denitrification NA Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 21088.0199 15041.4177 20548.2306 11810.9114 24852.156 8795.201 11731.9037 13289.7055 18280.419 17692.8181 291233.5139 31226.3895 36338.6257 11058.3499 9363.4042 9363.4042 12059.2065 41214.2263 20944.6895 19863.8619 52465.9925 30490.0769 17749.5152 9648.1545 21388.0892 12208.5644 45011.7799 16394.7079 20465.8161 14619.6812 12473.1678 21949.5454 14413.831 22626.0432 88643181 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5813.7634 2683.7797 3824.4138 4750.1805 3718.1909 58339.3574 3288.9568 5100.5713 2664.8953 7692.5607 3321.9171 5233.3929 5720.1496 2557.0686 7072.3301 2269.357 8384.4767 6080.5449 2632.3298 3069.8578 28330.7222 2957.1138 162452978 napa Nitrogen Dissimilatory N reduction NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 59944.1013 12580.9103 130802.0324 14393.4437 15714.5949 15469.3609 2551.4383 12019.3342 17557.2777 11559.2116 403453.6901 19995.6882 16814.2337 30398.4709 21266.7181 21266.7181 9699.672 21288.3269 36693.5984 6076.4965 20742.3124 8901.9154 8005.5498 14795.1529 28698.9597 6537.1437 52867.5732 30210.9135 29213.5785 8593.9742 11105.4658 28813.0071 22485.2415 6428.647 380772679 chnd Organic Remediation Other Hydrocarbons NA Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 4653.756 25263.1338 2536.1566 8794.1011 3488.2623 5807.4444 4850.729 4107.0712 3704.6686 8142.4586 9412.1755 4147.6049 8782.2604 4344.0347 84502845 pcag Organic Remediation Aromatics Other aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 12696.9226 5595.8216 7942.6099 6256.9026 22040.7373 7897.707 4385.5994 79908.3941 4015.3304 3368.7762 3368.7762 2786.4074 11566.9296 4440.5503 15960.6746 9109.061 4058.6897 8283.2273 3924.5289 6886.4885 9837.6738 12439.2967 5364.8663 5717.3265 3361.9208 4248.1294 5773.0748 3291.556 6305.8953 3402328 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 168338.635 28195.894 206930.1033 49681.4572 225769.51 90224.8143 153664.0173 184292.3606 130661.6373 122474.9072 83843.4075 263577.4538 1614475.6386 151473.231 195900.5674 253100.6245 120476.6988 120476.6988 87073.882 153358.0743 72097.8974 93855.646 162681.1642 79782.0868 44605.1748 94575.5083 98489.6557 53826.2983 173697.1184 137659.1858 142828.9216 78606.4693 132435.1404 94235.524 98406.8916 133456.3781 120431228 phenol_oxidase Carbon Cycling Carbon degradation Lignin Sclerotinia minor superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia; 30057.9972 81834.1786 6893.2802 18283.4639 12318.5015 8717.1071 39911.6999 16602.5894 30685.8478 15253.9582 46213.6114 367991.7413 48667.8366 24581.4631 167057.2238 13979.6777 13979.6777 11813.0369 28303.4264 25002.7674 16529.3116 21748.2413 23484.5158 6799.404 25723.6909 40927.1137 25557.9908 72284.38 103550.2843 28233.3676 22324.4684 81497.9737 26734.4018 10345.2938 31461.6197 258549281 hao Nitrogen Nitrification NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 16184.8012 6761.716 23270.3238 37160.1045 7154.0695 32785.2905 15223.3849 13572.5691 12675.2282 21746.1234 24897.8568 472166.0266 22878.6383 24426.7955 18633.92 15501.8606 15501.8606 8432.6984 25559.474 15901.7937 9769.5884 16212.3535 14335.3198 9559.0743 15376.0212 26869.9811 13634.9539 57830.6783 23662.0371 24081.1982 422640.0299 16910.7539 18828.5532 12062.4638 16164.7943 357079216 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 102475.3185 17250.4561 353780.4059 121788.7495 56439.1323 23755.573 104194.9083 97613.1696 53497.6759 93699.9817 123353.3066 64502.4253 1511213.9404 169274.2463 82382.791 87139.2731 102561.5879 102561.5879 56631.7758 83755.9046 74258.4482 180943.4857 90474.5985 100858.0707 74699.2388 43441.8451 60940.851 111956.6727 72588.0151 74116.9217 95926.8271 34240.0827 65314.3726 83910.9054 46843.6194 119665.3918 394761607 terc Metal Homeostasis Tellurium Detoxification Actinomyces massiliensis F0489 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 15688.4513 889353.6303 29435.8373 55984.224 6894.9542 20620.1627 9311.9361 3968.8784 22261.4537 15023.7446 36544.744 256599.8953 14733.1826 13422.9113 13351.4863 72589.5335 72589.5335 7992.0435 25664.5331 14266.2467 13178.5188 110277.0681 15126.4883 12618.5546 10378.0347 26076.0183 8098.0897 44174.703 22896.041 23015.4002 8720.2032 49537.1887 14310.7052 12884.6245 65201.8249 407275261 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 38871.1064 136072.5842 45471.187 38738.0267 15821.1258 201812.7064 33554.2212 107078.6208 34830.6309 105707.9339 45805.912 747405.6068 51358.7887 34625.8258 41300.4531 45679.7839 45679.7839 32933.5183 57275.0491 42129.0708 58564.0983 117758.509 65781.0674 40963.5959 34218.3408 47117.7071 43475.1166 99911.8461 60386.1799 59060.4832 32112.77 46059.3822 50968.8083 36266.0471 116308.7472 303282871 actin_Viridiplantae Other Phylogenetic NA Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 5163.8223 2645.5155 4566.2699 57620.6517 2982.7164 6561.0832 5222.3943 3297.0518 2351.1265 4951.6317 9494.3918 4078.7282 4548.9478 3111.0569 4140.1207 2526.6781 5115.403 71847839 arra Metal Homeostasis Arsenic Detoxification Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 10193.2051 6853.0385 29809.3192 1712.0713 13580.1726 2956.6612 6579.5805 7082.3201 6937.1809 3793.4616 9108.7254 9108.7254 7108.1975 4252.7673 4365.4388 18940.2007 7708.0513 3209.5191 3007.8612 6084.9188 18972.7536 6972.4829 7547.5987 2590.0361 7889.8389 7883.5995 6437.3964 8299.7413 296805652 aln Organic Remediation Others NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4429.02325 3191.2258 2690.8818 3656.7491 3513.676 3066.9149 104032.2678 4265.7544 3629.2748 2346.5211 2346.5211 2946.815 7034.2453 4473.3674 3640.1618 4175.6527 2560.0918 4681.6618 2621.8802 8226.5375 5006.68605 2557.1105 2951.2486 3859.1304 2822.042 7940.6847 269794162 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 4400.6457 6221.3452 5502.7415 2549.6306 4989.822 5101.8094 18200.7283 67672.2734 3490.1028 7662.3348 5517.9141 3899.2922 3899.2922 33937.1579 12096.6335 3902.3395 14451.3011 44186.4524 33693.282 3172.0521 10624.3836 5965.406 8300.9594 189753.2082 19550.8245 7118.6189 2554.6482 15316.9931 23844.9336 11694.2006 44185.3317 356687209 amyA Carbon Cycling Carbon degradation Starch Aeromonas salmonicida subsp. salmonicida 01-B526 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9665.8736 9480.6426 4997.3826 7712.9867 5266.5271 7218.0752 4938.6184 143695.8845 6453.3882 8567.884 6169.4425 7745.4061 7745.4061 3647.0656 12880.0814 6521.7169 7900.4785 10375.7276 5921.7047 3798.7787 7032.4488 11069.3679 3818.7197 18745.3101 6853.2754 8539.1445 4451.5726 5524.5358 11453.8456 2395.2571 11197.4229 258511918 dehh109 Organic Remediation Chlorinated solvents NA Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 75883.1221 14114.3504 53072.9788 44615.743 65413.1367 29989.0158 242371.6413 55491.5076 76693.5434 66474.7036 47911.0689 102977.3462 754728.9535 108433.4884 71348.6816 91456.7291 45672.7197 45672.7197 30843.1248 78689.4929 52754.3972 65801.1662 55521.3886 80281.234 32772.6315 43196.6364 73493.2237 78041.1856 113140.7083 68336.3037 140458.8093 55348.5943 40108.4272 52319.1079 40095.3436 29613.6923 307771948 nirb Nitrogen Assimilatory N reduction NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 14580.4091 163123.9962 8095.2563 8651.355 4448.2093 423692.537 8193.0984 10310.2367 8069.2857 7015.9414 7015.9414 6070.9315 20160.68 4900.5191 4766.2336 2826.0522 5996.3504 4993.2477 24124.0271 23998.1252 7270.5096 13211.8172 6671.0149 12278.8388 3270.8511 87281207 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8609.7501 6445.2016 19566.1479 4733.265 2391.8568 3099.9983 3735.8861 19832.8286 2466.8963 96139.2672 7591.6539 22101.2654 7700.0118 5413.7756 5413.7756 5043.7875 5257.9363 4062.1273 14543.9444 5650.4949 23255.4877 3123.1008 11590.425 4907.3 9446.1482 4764.3129 13655.2744 2171.6469 4021.676 5932.9965 2119.5065 9717.7288 55978148 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9606.92 6331.0502 215823.2349 71960.9612 44327.9481 2541.646 8967.8565 3734.4944 13762.6405 52639.5913 4456.4393 4951.3289 5320.3308 5320.3308 16622.5949 3622.9966 6389.1453 43002.3194 22669.0202 2123.881 7446.9443 9407.106 11025.4051 21331.5227 4899.676 9459.8471 4995.3081 4408.2892 3734.7775 2514.0602 218288196 catechol_b Organic Remediation Aromatics Other aromatics Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 4896.2337 6299.5685 24383.9415 6497.2415 4929.9988 6154.1198 5104.8372 9198.7921 3574.462 3931.7093 71282719 ppx Phosphorus Polyphosphate degradation NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 4056.2186 28723.9162 148335.6214 2185.5232 1948.77 3168.1778 4731.1591 3529.7308 80082.4707 5885.4498 3138.6672 9672.021 48821.1464 4416.1205 5495.7422 32558.5127 2081.593 4549.1202 8507.1338 2114.7077 16878.3613 8503.0215 1931.8292 5711.3248 4411.5927 7922.6785 5699.6209 170727753 cda Carbon Cycling Carbon degradation Starch Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 8623.7266 12007.9129 5819.2201 3336.0134 3287.7647 3657.5633 8576.726 9130.4611 4646.7134 214189.8554 10594.825 7567.0276 4275.2247 4275.2247 5765.2049 12526.9255 11148.1537 259919.2836 9285.1721 5615.1542 4655.0043 5039.3146 11690.0885 3753.6822 18222.8967 7124.9022 12074.4663 3211.285 5880.9955 6859.5914 3594.8105 13675.6366 149123273 pcag Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 40101.0756 43712.6709 65245.8269 4847.1331 4224.0235 26939.936 31481.2947 35647.9237 5495.6769 4556.8723 1510483.3142 13014.3135 15169.7577 17193.5024 9272.3409 9272.3409 3183.7301 14773.0573 4231.1299 5683.3389 16422.5023 6291.7163 4260.7462 6372.068 7519.6542 4327.1843 22823.489 5823.605 9156.7294 3313.2874 8003.0147 17732.1405 5754.4422 7774.9324 386811827 glucoamylase Carbon Cycling Carbon degradation Starch planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 5338.1533 7232.4239 21341.4412 11300.0349 7370.947 4674.3894 8722.5947 25163.2535 184965.508 5849.4001 9014.1649 15143.4625 7889.1312 7889.1312 3227.4094 7600.833 8765.7219 7568.8471 5521.0552 3716.9978 10013.6371 3993.6143 15830.6744 28334.6664 10373.9175 5524.1096 3192.4475 5524.8561 7089.9732 60476259 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 17513.5601 25368.1177 10974.0618 15763.279 36925.6151 6425.0191 19773.8694 33382.8179 11129.1532 31649.5013 14787.06 13246.1996 619731.5767 22208.0488 31253.1697 19654.3877 12563.8611 12563.8611 14918.5088 23991.8963 25857.5205 16343.3975 22263.6582 16907.9964 9175.7452 9964.8988 23331.5874 12544.6683 284029.5382 25131.0796 23216.6933 12838.3601 17935.9517 13524.5542 19228.0276 24139.7396 67904096 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4285.4657 8095.2649 82607.6428 4882.4538 3225.8941 5182.3174 2376.3757 2376.3757 5041.3444 3620.9351 4500.6856 5897.8554 5453.6801 11101.3217 2503.2548 2625.2359 4852.5122 3157528 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 55730.2378 2819.6452 107093.4372 9825.6524 3536.56 29211.769 10786.8009 4888.2271 12286.5392 5317.4299 5061.0619 2184.0387 4363.1787 6838.3269 3066.3098 4132.8429 6442.0261 3173.327 3239.44 2486.4666 2960395 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces lividans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7714.4433 4827.655 8017.1939 2605.3895 10346.4502 21566.9444 6047.7488 27641.7483 6342.5932 193504.4326 14040.2541 15129.1147 11929.5857 8641.0014 8641.0014 6004.229 11723.5989 6989.1148 10660.8772 9614.9939 7948.0211 5458.4819 15950.3724 9856.0898 8574.44 22997.5223 9813.274 24136.4178 7204.3958 11430.1534 18762.0809 7934.3329 10525.8505 189501303 amyA Carbon Cycling Carbon degradation Starch Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 4156.8203 2627.4763 2860.2319 4286.2225 4614.1634 2665.5062 77017.9779 8353.6074 3704.9505 3650.5734 8540.9298 5160.3707 5635.5396 5178.0357 21679.5386 2703.4959 3087.674 8626.4259 3238.0184 9385.4726 4709.2149 7289.0285 2319.7959 5137.4656 4106.0599 3215.8604 8441.6928 332516907 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 14620.4201 8058.5021 7410.5889 11077.2554 7235.5561 6140.6391 7276.8477 8819.8254 3518.2727 190324.1738 17600.6199 11343.8329 9881.235 45024.7684 45024.7684 7361.2735 14472.5308 20367.51 12558.7363 17163.883 18978.477 6933.2337 5410.3038 9071.4672 6332.7106 24427.0921 14051.068 16360.549 5768.7434 7551.9379 8347.738 6883.6474 16855.0458 260621491 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 68550.1823 17766.5971 8170.4296 13412.7745 38773.8272 19925.8271 12023.8878 38064.7106 8585.0972 263091.4491 22781.6095 12443.2635 34072.3864 18680.6078 18680.6078 6935.1977 36708.6102 16505.6547 31891.3427 27751.1622 13730.3036 21343.0274 13600.0892 22409.079 20852.4247 56013.9606 55291.9322 26201.202 14505.8129 18209.6923 35636.6798 16262.1193 28118.3514 151302117 aps_apra Sulfur adenylylsulfate reductase NA Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 5764.311 14893.5368 3998.294 10127.1975 4665.9869 20576.5538 92432.7913 3435.3932 7188.8283 57688.7272 4417.662 4522.5798 2204.4288 3385.1727 14677.1101 9674.7303 8881.8208 2395.5824 4148.5671 3191.8734 2225.1336 4747.3448 119503015 dmdA Sulfur DMSP degradation NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6501.5802 4222.403 6145.7022 5079.0847 3995.683 11944.139 4767.3361 4799.5283 86456.5919 8920.1543 4847.2238 5809.1641 4408.4369 7892.5666 6128.1145 5424.4239 7787.8422 10770.8517 2459.7909 4694.7254 8208.5926 4505.6358 11651.9256 6191.3201 7426.1526 3707.9605 3108.0279 23689.6205 3116.8846 9002.0875 312194849 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 30076.0412 13474.7923 19267.6383 29471.9348 7227.772 11451.2374 11347.5223 6793.6794 20573.7586 24472.1542 11520.4341 428948.8153 26652.1318 16771.1089 12139.9272 10816.1251 10816.1251 22206.5915 35827.2029 22965.1317 29105.0823 33610.4181 40703.7369 9454.4086 15503.5556 42934.1083 10533.9481 45838.7077 42263.8298 34996.8568 25286.5628 15450.7525 23155.2088 14705.3952 72178.1613 422314325 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19796.2629 17369.8316 6295.2571 9029.8512 6247.6541 16000.0359 48362.622 7333.5011 11859.6759 13156.7819 226888.9816 11463.6221 15626.4084 12888.4782 13753.0213 13753.0213 11232.1267 67502.6906 9689.2444 23285.8857 40957.7884 6864.6455 12549.4306 13912.9122 15948.7624 17032.9814 49160.5917 22896.3301 19999.6719 6679.8963 20965.2291 28964.8013 13195.4729 152786.319 229589304 phn Organic Remediation Herbicides related compound NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 57800.3654 232881.1432 45588.2855 10147.5796 23300.0964 8618.9469 91509.1796 48077.1792 30687.4642 182011.207 74162.0046 45242.5213 506615.598 73202.1891 194482.1865 43786.0326 102163.5703 102163.5703 33890.8967 92288.8313 105772.6452 48047.7751 85844.6311 37933.4659 28559.9407 31022.7867 74623.3466 64931.3058 78487.2102 59364.1747 124162.3513 29539.3526 57089.3382 427193.5906 27107.7273 55932.5061 148240404 endochitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6185.8777 17728.6515 8145.0684 5125.289 2444.0579 4552.1572 19505.6867 7811.5128 99452.4382 7531.2769 8267.2227 16175.6376 4324.9538 4324.9538 4820.3703 9619.6709 6110.6815 8780.6166 7121.714 10858.8764 4473.1263 3214.4479 6028.6764 3620.4328 10921.6304 11223.3511 104698.6496 2652.1796 9267.02 7543.6662 15200.9163 8950.8604 209485959 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25994.6789 8955.3484 13238.2118 13483.9104 10202.8047 8935.0364 9927.1665 18331.1835 20151.2145 12603.122 235339.0733 14906.6222 13576.5992 7753.7733 8836.7741 8836.7741 8150.6673 56639.081 17831.672 60005.9957 19404.3602 17769.2686 10396.5633 10415.1923 18586.9239 7293.731 104735.3714 14546.6303 26505.1013 10140.5175 16369.0809 23401.037 11644.734 12072.1951 312113608 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 19561.3882 6469.4626 4811.9824 5027.4075 2092.3303 9202.7748 27477.99 10039.8018 194360.6035 4889.39 23136.8114 99028.6066 6711.8351 6711.8351 5270.1066 14559.3598 10796.98 8262.0585 10477.9416 7955.7172 6543.51 17742.3829 9060.2031 5902.7511 33794.9594 33034.571 13373.641 6593.5722 20355.5549 14119.6545 5146.3821 15603.4016 118171879 ppx Phosphorus Polyphosphate degradation NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 25476.513 22933.7195 21453.8638 31369.9908 5330.8717 25051.5939 11913.176 7845.2108 17189.4294 117858.5426 12727.9248 294232.1621 25273.7371 18094.2808 20394.0145 9203.3327 9203.3327 31237.331 60771.2325 15220.4042 22007.3739 27837.6577 36552.2137 9078.4963 10606.9923 22112.8108 17803.2405 40574.4643 25355.6092 22824.1316 11278.7893 19668.2687 16284.5325 14465.1134 18644.0466 269791037 amyA Carbon Cycling Carbon degradation Starch Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 48720.3599 8356.3651 9524.1975 13716.9631 94469.2919 4294.9589 6953.2166 4039.4892 118665.0828 5167.6633 27903.0349 8548.914 4497.6479 4497.6479 3276.4377 6877.8375 7101.8599 7380.6708 9986.8489 10186.6179 4143.5706 4022.6508 7824.4203 3436.93 10151.8267 4111.8137 11140.0271 3279.2175 4805.6281 5876.8946 5203.7546 4872.8888 365879094 ppk Phosphorus Polyphosphate synthesis NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 58483.8241 80809.2838 27919.7392 28155.4062 32791.6528 24679.7517 36274.6581 46450.6534 16945.1459 106780.6815 65998.6945 59678.2012 320634.9967 50097.1303 110193.0649 101187.1387 74826.7634 74826.7634 69586.1626 51720.083 34039.8755 29434.0458 49892.6942 37448.8623 140609.5285 74974.4846 55810.8568 64873.135 152020.3624 49915.3054 51765.1313 99122.0221 46448.4869 43853.3282 48045.907 28690.19 78196818 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4906.9399 17994.7859 5604.729 297567660 Sir Sulfur sulfite reduction NA Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 7048.7118 5469.0635 8570.6303 3689.6418 11024.4372 8327.3242 4883.6378 5435.294 103759.1006 8217.4952 7146.2104 3810.8504 10237.8917 10237.8917 8264.1703 17996.1076 12092.9395 5467.0564 8562.0892 7761.43 3800.1983 4868.1019 8857.7904 2904.3231 12771.8403 5028.3897 9870.9138 3998.7321 5078.5977 5051.0861 7167.2747 8846.9162 218712799 arsc Metal Homeostasis Arsenic Detoxification Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 4136.3184 89485.6711 2613.9869 2994.9634 5318.787 28725.197 74683.7794 10274.059 2187.7439 2187.7439 3223.1023 13818.7238 12474.8673 3865.9163 4221.5088 2723.441 15423.2409 6269.0919 9706.7372 3913.1739 5022.5881 2673.9777 365896421 nirk Nitrogen Denitrification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9547.9618 16256.8913 14337.0446 5148.9716 4042.9063 12399.167 5050.9884 5451.5483 3481.1733 134190.5821 6162.5187 10314.129 6472.1021 3052.3627 3052.3627 3063.5101 9809.6218 8015.9901 3789.3854 5499.2576 10941.1279 13504.0003 4670.1293 18373.6782 21742.0649 15597.0094 7607.8959 8586.0832 4868.5224 6232.4378 4625.4763 4004.4746 11024.4421 330839043 nifh Nitrogen Nitrogen fixation NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 290783.2264 29104.8198 281389.4523 1336994.2612 230320.8122 55136.0445 175269.7601 321385.3021 151540.3527 163378.7146 181537.8675 174929.7573 4776613.1703 174132.9596 290342.4362 683860.2943 327451.7167 327451.7167 100659.872 276583.1979 216581.7507 432780.8445 521635.2158 315398.588 150486.9593 182595.6358 252106.6245 296322.3354 568491.7666 277871.1044 292102.6131 186660.0733 196396.2047 234965.3209 173492.6433 184850.5589 119671792 norb Nitrogen Denitrification NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 17932.1633 8383.1461 23423.1998 14000.4002 9791.8107 4968.7316 7373.0209 15022.6626 7503.6388 92725.1561 12500.267 11372.2724 29503.7551 12816.8435 12816.8435 5278.4038 39746.6857 7991.8585 6347.36 56071.6142 17361.8533 7004.5999 12882.7944 11253.6519 6802.136 25001.5235 12795.1823 32347.1699 8158.9507 28959.2041 8832.0247 8017.0538 12180.6019 225792037 ara Carbon Cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 59249.6211 77413.8594 30385.3832 13308.9888 182140.639 16796.3593 24563.5286 46064.802 27047.8882 23632.5942 72726.2432 368931.2908 19195.6203 30021.2244 26128.2565 35623.848 35623.848 17666.0449 53242.1437 17715.8735 290671.622 37849.0293 30151.7935 22464.3111 21196.5162 31257.2563 30199.2021 49912.5022 33485.852 33212.9399 14214.8268 60069.0114 28781.0449 25190.6003 40526.5531 339323858 xlnd Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 16064.8381 9269.7268 21746.3325 5783.5515 59550.0376 9537.2155 7718.7357 33314.2366 19148.7605 10970.6178 337710.5567 8304.0121 16847.1653 26749.3204 4313.0426 4313.0426 128436.9317 18568.8008 11445.1345 9873.6143 34857.6277 29799.2969 7863.2028 12104.652 15070.6126 54396.6781 55401.7399 35871.2007 16003.5394 53753.4249 21762.578 10732.5989 14004.6453 12521.5462 237786471 ppx Phosphorus Polyphosphate degradation NA Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 12510.0307 15696.7206 17945.4464 10081.8098 7601.6466 10867.1784 7626.9404 7919.3013 13717.0531 14038.9113 7427.3689 214658.1901 22932.0115 13455.7428 15717.0916 7757.4393 7757.4393 7278.4481 23424.3713 11869.0401 11185.6737 22961.5059 12583.8987 7293.7595 9242.866 13441.236 7460.6089 20973.1136 8739.5047 30103.058 9090.1423 11521.9719 10545.0619 8167.5712 31289.1745 110827739 ara Carbon Cycling Carbon degradation Hemicellulose Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 76029.1582 6417.9253 446883.0416 47360.6894 113762.8578 201319.6791 5943.6898 10344.1712 15551.8043 11886.9775 170466.5968 12556.0118 31162.7606 65826.7925 12124.0411 12124.0411 18666.4009 20989.2257 44548.251 40180.1396 17104.072 30253.3335 9667.5878 20384.6496 46994.0918 12025.2383 32820.5982 10480.4898 23566.6578 21576.4202 11079.6929 14466.5801 6179.0083 15246.5702 39649554 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5088.1938 5485.3554 8865.706 5201.3566 2370.1499 4967.4348 7212.2764 10114.8114 294800.636 4905.2242 4520.9748 10159.2001 10159.2001 2939.9567 8093.1567 10629.0744 9045.0701 8161.0396 23514.7456 5440.236 2993.7959 6105.364 5759.6664 64533.7054 16030.7218 12760.6788 4822.9035 7621.3934 18099.7971 7507.572 7156.6695 1580816 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 10711.4975 13425.9293 11974.4891 4856.6111 7218.759 9503.7407 7017.8605 5187.3608 9831.9266 4727.1151 4130.4351 6015.5482 6999.7634 14811.8792 2637.5993 2637.5993 5242.4448 29521.7486 9377.431 149359.9239 15710.3389 10965.6197 6343.4398 6266.8581 104787.3424 5136.6076 26024.9046 21440.9038 27423.9983 9022.1339 12074.6299 13020.268 6975.56 76095.5669 337762597 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 359272.4826 22779.4906 233779.8228 494732.1881 863971.0039 234569.8884 191590.1552 280414.6883 213640.0797 251154.0014 205204.0622 175893.8615 3807672.467 242942.7039 546078.2914 1784515.222 277833.3847 277833.3847 185609.3402 250553.7813 131702.3297 612880.2066 239414.1642 225628.7315 146541.9323 144471.2165 223009.0735 152772.7761 700850.0124 159180.5737 322409.8812 201396.3736 200080.8844 173189.57 174642.5159 307179.5111 115359960 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 15846.5672 22874.1116 14424.9091 40927.3127 8545.3039 8086.8469 55474.5138 6411.503 18810.5304 45415.3988 19223.4853 465585.7986 69446.5663 11443.0186 24433.6776 22300.928 22300.928 40621.9918 40090.2846 31285.3056 11107.8248 18908.1022 25454.0166 17017.913 22724.5799 31829.9308 12040.3865 60839.9066 42225.2419 34415.1894 23528.4637 29864.1151 28150.1699 16602.1758 19989.0238 167034582 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 44325.2614 149368.7746 15651.021 21596.2715 7176.9897 32546.9322 19178.3595 45546.3869 63994.3593 54897.2208 53047.0858 1088244.3598 33923.3188 53785.3485 154568.5702 34449.39 34449.39 20463.0376 54633.5282 34110.5436 42309.8619 51657.6393 226600.8295 25568.2784 30077.0012 38178.4556 36629.3821 67864.556 43510.0548 62802.5361 20162.876 34724.5154 41474.7708 59774.3928 63032.0138 328841152 ppx Phosphorus Polyphosphate degradation NA Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 8708.768 64973.4401 4082.752 10656.318 4950.2531 4187.9901 5438.5913 64923.5846 5362.9098 3580.912 2398.7366 2398.7366 3822.9362 10481.9591 7307.0789 5554.0325 6953.2564 5051.1498 3205.0839 4114.3982 14035.1355 3740.5212 13846.9267 8742.9692 12174.9455 4339.1519 3861.1602 4404.7149 3070.7844 7456.6668 383822102 cbea Organic Remediation Aromatics Chlorinated aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 9176.9502 7091.8371 19712.038 3436.7666 14517.9749 2591.6416 7054.3419 10281.2141 5670.4742 303104.0013 19243.0928 9800.946 13435.4888 12400.6593 12400.6593 5656.7745 14035.8368 16857.445 6716.2647 7907.8879 2638.8384 7317.5238 20585.0113 14403.0979 30677.8108 30820.154 22796.6102 6784.5846 10288.2967 4225.6445 3843.5079 8664.2252 269979613 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 7745.7926 22590.6704 43082.7311 16528.7153 4687.3122 10629.9492 2104.7719 10096.2673 8167.6129 5642.1683 375254.0104 9308.9548 10934.2491 13116.7633 8243.8433 8243.8433 5744.7521 19315.6962 74732.6678 7643.6591 6572.1253 10424.5395 4602.773 6125.7314 18332.7691 4903.9976 21319.7734 18060.3348 17161.1571 7630.3383 5954.3208 6588.3769 4529.4543 8902.938 227358250 urec Nitrogen Ammonification NA Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 4267.7414 7101.8225 2893.9941 2545.2223 4467.2314 2739.2166 127485.368 5033.8993 3862.5201 3349.5185 9553.1937 6230.8361 6076.9184 7353.8495 2770.9062 2959.9185 5272.9394 3524.822 3691.8752 6734.0953 3063.7361 2940.6026 2907.492 2472.5574 6033.4594 353346344 amyA Carbon Cycling Carbon degradation Starch Aggregatibacter aphrophilus F0387 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 7754.6783 2618.0053 3749.528 3768.1466 4804.3236 62602.4392 5389.0118 5507.1751 4093.515 9477.2182 6042.9989 9162.185 4565.168 2688.5233 2542.4174 8521.2669 2817.3741 12301.7279 6171.1299 8552.0134 3759.2404 3324.9291 4076.9437 4177.4072 7363.5703 780727 nifh Nitrogen Nitrogen fixation NA unidentified marine eubacterium superkingdom:Bacteria; 5771.6174 3952.4742 9856.8326 3254.6583 2967.9259 3862.3115 3739.2118 60618.5424 3636.2755 2059.4083 2059.4083 3148.5397 7227.6586 4158.2394 7618.8759 3175.6234 8347.9062 2431.8422 13321.126 5467.9959 5797.4692 2559.5708 4300.7985 3129.4377 4586.0219 336412795 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus 3_8_47FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 4278.7198 4585.87 4542.998 3836.7218 5706.0683 8741.5358 2897.7338 126488.8651 5881.9965 7807.9286 3061.7236 3061.7236 5562.7663 11379.9063 9695.6418 6410.3352 8436.6746 9935.0741 3065.2919 3497.6166 9601.9173 3098.1763 14143.5264 7610.9865 10116.3708 5112.9665 6058.1204 5443.1899 3094.7374 10268.8001 76577536 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5783.5666 5100.4913 3520.8169 81959.7738 4700.0763 5168.8479 10847.6596 3263.78 3263.78 3800.9309 4215.1081 5013.0561 2708.3129 5589.5391 4180.1256 5325.544 3194.5419 2098.4302 118175273 urec Nitrogen Ammonification NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4775.4119 4883.4148 3186.379 6132.0209 3845.734 4388.2297 12676.408 5012.1931 78613.5225 3980.4689 7986.2347 5019.5369 2547.1024 2547.1024 4742.1173 8950.5085 3641.8969 6734.7644 6902.7456 3159.726 6560.1735 11623.7194 7294.9659 12691.8687 6277.2822 5539.4534 6764.918 7343.4822 12219.8822 3560.209 6303.6668 157679018 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20875.791 14457.6591 10327.9176 75012.5769 17734.424 14709.9007 10467.5133 17004.0368 16209.6702 16238.7821 437131.9025 20351.3535 14497.8717 37812.4205 22811.3342 22811.3342 15025.9224 36147.3997 18057.5665 20794.0793 30883.7359 30563.4072 15983.4083 19218.0764 28574.9924 13999.3887 64548.6182 28985.4779 29885.0075 13968.5048 21280.4501 21121.5272 14481.4082 35161.7753 145702471 3HP_CoAs Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 10069.0131 29398.8825 10134.5073 6363.835 26300.2529 12696.7661 10223.0398 7052.6391 14577.0378 23605.0939 69850.8988 177754.7873 16369.7209 14083.9647 11364.1646 15801.533 15801.533 7061.7678 24305.518 11155.5796 13918.974 12291.6385 10064.2063 11526.7903 9253.7591 22538.2492 58633.9414 18821.2495 12798.46 12703.3047 7240.0489 9785.3324 8244.515 10470.6623 13113.9374 2588983 phdi Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 49296.3223 124153.4788 20774.6211 14782.2442 132598.6906 25941.8151 24378.8598 20646.4402 40749.8082 432240.9508 12370.7785 25164.0753 408896.5077 27863.5825 27863.5825 66030.8739 46198.6383 12788.2495 13279.2305 22354.4929 50710.3912 35003.6704 91384.3765 12568.5601 26518.5681 62396.1765 27838.5476 143366.5617 11182.7883 28641.0121 55821.0954 70583.9928 272581.4984 189423200 b_lactamase Virulence Antibiotic resistance Degradation Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 4243.9611 2185.4097 5388.0314 5219.6229 69507.525 2022.8597 2022.8597 2581.6967 8230.9942 3745.9047 4768.0323 8046.6046 5944.7964 2430.0639 3621.1956 6774.8448 2409.6972 12643.1484 4255.0119 6446.1054 3785.343 6915.5353 3209.3993 3157.5196 8690.9676 381337624 nirb Nitrogen Assimilatory N reduction NA Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 41395.894 24143.5877 27160.0415 24802.1535 39785.0408 7836.9291 19141.6692 22368.6348 13561.4026 28497.8253 301111.0671 73769.9425 845282.8802 40900.1003 47858.3108 29322.7484 29156.9542 29156.9542 21140.5648 50726.0312 30728.7748 255981.6475 77191.7589 71099.3479 16147.8688 19277.7759 47844.1032 17002.8603 73095.9583 38778.9476 503003.7892 18795.6736 27813.285 38609.5494 17928.8737 50209.6834 311896279 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 10136.8633 8777.1534 2607.2533 2809.6405 11511.6269 4154.7276 4391.4835 108740.2103 7961.775 5937.0918 8491.3681 2928.5097 2928.5097 2749.2839 8582.8704 3762.0952 8472.7081 4704.3552 5031.2269 3784.3269 7365.8973 3124.0379 10762.2927 7328.8822 8720.4545 4470.5241 5754.8406 5174.0507 4483.3352 7697.1281 297623672 endoglucanase Carbon Cycling Carbon degradation Cellulose Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 5478.5526 7083.6697 19557.3175 11028.1482 5794.6227 7264.5633 4102.8843 4713.5624 6028.2705 4117.4264 180378.5408 10436.2238 11168.0415 6537.6142 7519.9063 7519.9063 5335.5573 13421.4038 5083.2191 8360.4174 33735.3875 7256.6609 4181.9625 79685.3686 11236.5074 9826.069 19303.0458 14310.1178 12063.266 8958.252 5880.5531 6967.2077 6684.4162 7257.4929 150376817 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 20967.2411 6447.1106 4193.2139 4542.9606 17780.4025 13502.1819 11727.1546 8020.1749 29141.9043 17458.6596 161797.6518 11171.7975 32275.0389 14578.607 19088.0824 19088.0824 43471.4313 22507.5514 11972.8335 39551.8716 28509.6373 69550.1154 131314.7663 13220.4178 19833.4087 159540.0189 32466.6588 24672.1804 29980.0638 9111.3851 28764.6223 18793.2901 11660.3023 9465.9285 85667486 xylanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium adolescentis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 7930.0216 5986.442 7890.914 16129.2221 9079.7939 63799.341 11332.9463 3793.8102 7847.2969 15955.3657 6151.1273 373723.426 26042.7573 13985.91 13382.2597 16802.6942 16802.6942 6191.3886 20074.22 25757.7413 7367.6796 8330.7135 9877.9854 4874.7962 12726.9383 18039.3115 9595.7354 24505.4858 19631.0314 55652.0093 10343.2015 11232.784 12739.7701 6535.6295 9596.787 148724107 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium B-358 superkingdom:Bacteria; 6201.7436 3232.715 3232.715 3536.7151 2186.1369 3915.405 332172179 mer Metal Homeostasis Mercury Detoxification Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 12323.4 5377.2748 49835.011 227890.2952 48548.9375 104984.7945 4350.9919 5614.1944 9903.1632 1501833.2267 4161.8282 3638.058 18266.1972 18266.1972 2817.7577 7646.07 7439.3486 33657.3686 13896.7334 4870.52 4323.8525 7693.8963 10317.9241 3973.8441 23715.0221 10042.8702 10696.698 8467.4961 5466.2957 7588.08 12725.9929 5505.8118 319783888 b_lactamase Virulence Antibiotic resistance Degradation Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 12577.7231 12502.0141 6079.3765 9570.4426 10221.1142 26995.3905 21798.1649 7240.7291 83864.4173 4267.4795 65725.5414 10530.5419 17332.3571 17332.3571 9414.1419 10304.3236 12602.1022 5069.4071 6794.9919 6297.8628 9595.7134 9811.3241 7956.4647 11411.2602 21930.0455 35895.0106 21995.4396 3927.598 20860.2231 15160.8206 8041.0549 37681.4036 302472581 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 94086.7007 11505.6941 24690.5028 13911.1328 66842.0467 55328.7555 17771.0639 45948.4339 14048.7608 39160.0184 56883.9988 43486.6806 1175384.8412 38748.4857 120768.1301 115333.7703 54317.3556 54317.3556 24325.5951 151777.4349 48429.748 77128.2733 116561.7391 52471.0232 37356.7275 52077.1002 109379.4447 35036.6368 107095.017 101112.1594 155807.4719 23528.4168 30411.9743 56467.8637 19235.2983 52897.2597 228894261 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 158364.991 28032.7036 110147.0925 125055.1395 326370.243 43281.411 187147.7516 483396.5123 77285.2835 84470.8945 189871.7022 93864.1282 3057738.383 114753.4492 128994.2175 287031.5005 135728.6713 135728.6713 87387.3839 156069.0305 81290.0114 103933.4328 153097.9196 220899.7747 69360.4344 83411.9407 141371.5166 89551.3574 211107.1858 117473.9293 157943.182 75350.5626 78952.3575 85776.4853 68886.2259 150550.2363 302648425 cysI Sulfur Other NA Actinobacillus pleuropneumoniae serovar 2 str. 4226 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 4681.8804 6259.6209 6340.244 2551.6343 2637.8537 3502.4919 8278.6656 2385.8297 10719.1936 5496.4264 4038.5834 4038.5834 3642.7162 7725.9594 6451.6364 4743.3249 5806.2381 2888.2512 8852.3269 5448.4264 6250.6551 2952.7887 3204.5754 3371.0275 2742.6286 8261.9927 94471177 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13813.5181 6675.3102 6591.9512 22207.8694 10681.677 15347.881 2720.2993 19350.7455 34239.856 18180.9368 219039.9257 18369.1511 17250.4871 16412.9239 19085.4796 19085.4796 15035.3376 32226.873 40927.526 13090.6114 15895.5696 34882.9286 5779.9313 22441.4626 28463.229 12497.7148 69664.6899 21656.039 32214.4686 14295.0087 30287.5027 13436.2422 8410.6397 28166.3637 153962624 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 8945.4723 5229.9398 11153.067 2821.7863 6008.0196 6453.7532 8170.5027 5704.0038 5142.1623 89892.3436 11502.7449 15157.2828 18520.7854 35648.8113 35648.8113 3965.6929 9039.2161 13403.2024 6248.6834 16642.1267 2635.2935 4519.6498 10422.8006 8071.9393 19703.2684 8240.2543 12234.7011 3866.3056 11062.057 8805.1168 4458.7348 359278517 pgk Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 substr. PCC-P superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 33125.5088 24178.8874 8770.5091 8913.8975 5814.8766 9706.2842 2437.5292 6680.4329 16512.5793 13694.2761 105860.2644 6724.8786 10160.1322 12340.7966 30716.467 30716.467 6143.936 29790.8641 12276.893 24408.7746 14862.0611 7468.2734 21582.1572 18382.5266 16471.1229 9089.8066 25327.4807 11124.5229 17880.0044 37588.9542 8881.8157 11532.4717 4976.8968 27975.9352 76057029 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 376367.6413 27318.658 14379.873 14260.7857 10171.8595 13411.455 27543.9806 20342.2564 29893.9042 158950.1298 12244.779 28474.2868 98510.8283 18043.7803 18043.7803 13474.7919 42702.2183 14685.4821 44279.7094 74870.7589 32429.8559 16219.0355 52708.9598 17347.5252 25731.0159 50546.5948 55404.0442 23448.4154 13901.0395 18897.6682 33778.4691 20728.3193 16490.9966 118174222 tfth Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 14577.9725 18137.148 22424.1836 4638.344 12609.9896 6281.7004 21775.9546 18335.4296 140762.6876 8578.065 6539.3866 8092.8082 11188.4904 11188.4904 4181.6488 21041.8751 10050.5361 6246.5725 17933.094 6812.5039 7441.052 5637.4193 15752.7795 42653.7211 90325.4227 12779.938 17235.3309 10553.8531 14613.602 12067.569 18380.6097 11278.6237 388005021 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Q8r1-96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 25691.6764 9890.2741 7250.4626 31778.9322 14610.1091 73408.5388 16839.8401 75310.5125 45557.5596 32377.788 1862324.1381 18889.9266 91161.1311 274669.5209 65391.4372 41965.9533 15790.1523 49506.7815 48066.4483 28329.7344 29838.2587 50271.0127 26993.9189 33484.615 45694.7056 44187.7159 51081.9363 260592628 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 5126.4199 7758.9792 6432.7704 4845.6539 4210.1431 288940304 PRK Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 188673.7968 124745.9577 48791.9834 20713.6176 28798.414 33698.5831 44574.0971 51028.2589 105457.7338 72349.2339 49552.3891 1767247.7453 48628.2328 77069.2177 117665.2942 50016.9276 50016.9276 32894.9963 52186.1249 64670.5763 349174.1976 56530.2823 432629.7808 21057.7046 101085.0576 87559.0917 42718.4701 37030.2883 34818.1321 51655.2055 20405.0649 60931.0971 50285.2476 25478.459 64685.7027 168699430 arsm Metal Homeostasis Arsenic Detoxification Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 8853.1533 7486.7592 6425.735 10288.8253 3614.3483 4135.6371 2191.7667 6675.0369 5570.519 3200.5224 184724.3421 7763.4506 8391.4583 12916.2064 6270.2265 6270.2265 3709.7638 12987.8794 12537.718 8276.5214 8171.9836 10672.0582 5042.9562 4562.0714 12605.9904 4704.7944 13425.4542 7197.5305 9216.7482 2472.2326 7112.1126 11312.5212 3849.0843 7689.3292 324990230 pula Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK353 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 3507.3113 5782.0972 4379.3237 3171.5733 3686.2318 6366.2727 2614.6886 2614.6886 5686.1636 11917.3281 4022.2923 4041.4678 4828.9489 2353.8688 5378.9157 1924.1745 9308.6317 3372.3622 5052.4904 1646.90335 3206.1674 160917625 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11046.9509 9777.7797 7274.4978 4318.3717 10695.3841 5430.7887 7696.936 25891.9353 23969.8105 191902.5908 10560.9222 16977.9089 5653.2358 27694.8383 27694.8383 9697.0598 17001.7756 13126.4877 16009.3897 11093.9254 13323.3541 3849.6186 34998.9516 25699.6878 6806.7855 240247.2667 9618.2268 20344.015 6100.6548 10238.9645 9426.6896 6445.0017 8999.9084 308047820 phytase Phosphorus Phytic acid hydrolysis NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 174224.1055 10993.7373 5104.2026 13604.0719 4581.3926 3676.6968 5026.2207 4106.0455 4426.3799 4296.1907 6832.6375 6832.6375 8701.8235 4148.2751 12377.9903 43978.6279 5821.3488 5246.9791 3724.0112 8268.6218 10999.1833 17258.6986 10312.9086 3026.8569 6002.1902 3876.2534 4836.9205 326330654 chitinase Carbon Cycling Carbon degradation Chitin Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 106028.8717 9899.5682 36280.0098 10390.5928 52114.0206 15378.4567 48023.7955 14101.2141 79817.7196 56688.9722 32690.367 539769.3392 52754.3185 40970.3535 31383.277 26998.8065 26998.8065 30310.3922 68090.3812 26423.7085 27184.701 53349.9373 167591.4381 30958.4959 26899.0993 28574.8653 33475.3092 94998.8356 52082.2671 37237.6398 34526.9723 22881.1889 83607.1472 38906.6911 69309.9614 26278876 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 69510.4588 30504.7028 38699.678 288803.0196 33080.531 21504.3739 38733.0827 218716.4095 20770.516 57397.0533 31672.5067 16844.0514 850321.0591 51928.4324 38701.3762 40725.14 23280.559 23280.559 25678.2094 42171.7268 33389.0628 30347.4103 108606.5496 47821.6101 58468.0344 26977.1676 122843.2847 138371.3888 66403.2287 140356.2947 50063.3932 22995.3285 28252.2703 26581.959 48433.9635 60643.1821 297210345 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 36930.2155 4074.5155 3695.8001 5555.6305 3973.4981 6911.5787 28780.844 7986.1793 65009.4903 5500.7422 8264.0079 3746.8977 3746.8977 7855.0385 27917.0513 10086.9842 6627.0583 8821.5443 5503.5998 5240.1527 4240.7361 6105.9258 5366.1312 17893.1243 5629.6481 9823.7983 3990.9277 15912.118 9691.3557 4512.4704 6496.2026 153962706 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 17544.1101 19142.7151 68618.6469 18539.0843 4708.7535 19529.836 11337.053 12047.2849 14782.1631 27136.3362 12249.1609 416411.6457 23609.8798 24237.9128 26219.1905 14451.2827 14451.2827 12720.5719 28103.9396 25734.368 31870.3468 25391.1046 30884.3162 10753.4196 9698.0913 26148.6117 11728.107 36244.4891 13027.0872 26556.662 9920.8133 11758.9453 14821.3563 12208.0309 255711.5218 225348657 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4309.1242 10038.8716 2821.447 72450.3536 4367.9037 3275.4093 2592.2839 3716.8362 2100.9646 24969.5412 184199401 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 8276.0419 6772.5705 12204.7321 26169.2739 16143.8494 6930.0184 7348.2936 5168.3906 64451.5031 156940.4645 5911.5181 15709.2837 30035.1594 6243.3278 6243.3278 4144.7125 23848.6868 6515.9319 6327.0688 12156.7413 6619.1726 7235.871 11348.7716 5635.9727 4753.1853 48453.8517 7024.586 11225.19 5822.143 29619.9102 8031.6859 27774.3982 10080.4084 307632822 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 6005.6062 20274.0809 6488.5741 6853.1205 2338.1189 2338.1189 11844.0228 2886.0177 8844.3534 3985.6975 21735.4372 158332178 ppx Phosphorus Polyphosphate degradation NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 100767.1101 87266.1341 87661.9984 142996.5399 23698.5942 49150.8715 68165.1584 58339.6143 69638.9936 112134.9471 101038.3765 3223599.518 100085.4593 94508.4318 181063.2082 73366.9496 73366.9496 56613.8876 140736.0583 78941.8769 60950.1775 96989.2703 233199.6603 64856.9525 76298.0739 131934.9865 95007.6817 159875.8558 110720.2209 146424.419 59234.9464 88136.6578 101312.5987 86427.2509 45525.6865 209486972 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 51093.4411 281167.0899 33806.0495 269862.825 109214.0467 22202.117 52067.3719 40789.8051 61199.8937 59915.6235 44026.6264 1508768.9676 44474.7232 77219.3344 70877.5436 60602.2625 60602.2625 38646.8353 123840.076 45149.1875 31259.0113 41065.4761 76516.544 27808.3322 43640.3369 151143.9675 35573.7679 155853.9372 106141.8047 124604.5296 30301.4035 51496.5935 55248.7424 19074.416 31083.6377 217413012 xyla Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 51247.947 13742.6996 10552.0358 7574.5248 5234.4059 13389.3418 10132.6282 7958.2065 11904.1266 9332.8027 30787.3559 152846.1875 38799.576 12150.0149 10183.9301 11116.3665 11116.3665 9206.5844 16600.4429 14355.7331 13702.1394 11972.7103 91479.7832 8003.4326 13106.3576 12111.4809 14094.6783 20558.1173 7649.2072 23255.9796 5749.4162 16444.1321 11069.6935 13076.8358 8968.4751 302412250 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 69363.1328 12310.2632 19961.8123 55509.7636 42905.2886 28841.9121 4611.6872 5828.3196 3339.1768 4204.0581 8569.4674 7388.7492 13419.8938 13419.8938 5729.5168 17849.403 107859.2827 9297.6844 11567.5326 3254.2061 6237.3179 7086.2105 7743.0093 4882.5928 6193.597 6318.4536 6344.108 3962.1201 3088.2787 10704.5626 51872787 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 11287.9639 14019.6832 4175.229 22438.8686 3696.439 116017.9371 4895.2582 2717.0972 2717.0972 13973.2803 12056.7596 11724.2618 9806.8491 9639.1268 3685.2658 6329.5737 11931.1161 8664.6146 14114.3932 4233.6176 5254.9184 7013.3122 13577.0373 12223.6621 361054799 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 25250.5526 151389.599 75720.3993 261218.5728 77361.2529 19652.3948 23887.2687 36879.2841 25999.9813 26884.8125 33919.1906 32010.2737 490122.2779 32150.9961 41997.8714 30997.6645 24655.3014 24655.3014 17767.5909 49076.7498 19281.4919 65926.3682 61635.8469 46956.3237 17788.0197 23788.3258 50166.7351 16453.3576 63509.2212 46707.3683 92680.5628 12042.0842 113324.782 38454.7225 27202.4218 37650.3742 254416349 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 5303.5189 4244.5701 2535.9381 3684.1161 4379.9147 4294.3961 7978.9422 3971.7819 3808.0489 5077.7609 6848.2982 2186.7095 5578.6098 2301.3614 8310.1734 4827.6147 3265.5058 2601.4662 2905.9417 2049.8969 9143.9894 160362622 atzb Organic Remediation Herbicides related compound NA Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 51407.1443 11430.3117 30915.0209 12251.9987 9006.2895 36398.3604 2990.8894 10505.8759 12386.6401 13249.6153 259845.3735 16543.5274 32472.1347 25641.8721 27261.8322 27261.8322 24550.515 29541.7534 13575.8665 10435.9544 12027.4789 13463.8238 7186.6558 9678.7904 19604.3146 25200.5517 34722.3643 24666.4709 11917.5929 8880.9664 18683.6672 21630.1549 6905.4943 10758.166 315314022 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 5505.4224 4267.4051 3447.774 3447.774 6008.3273 3725.7041 6276.8052 1825.3913 112361522 fcba Organic Remediation Aromatics Chlorinated aromatics consortium cosmid clone pGZ1 superkingdom:Bacteria; 9185.1533 11944.1287 7022.1872 8183.6232 8104.7959 3109.5464 10960.8307 9519.3337 16470.9422 5236.5152 6237.1253 8696.6097 8696.6097 8955.9794 4400.5482 6711.8655 6852.4931 3808.8884 3969.0159 6359.0066 4998.0675 9507.365 6366.2933 20955.4022 7087.4348 5934.7455 10743.5825 5997.1149 188991098 amyA Carbon Cycling Carbon degradation Starch Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 139093.5975 24395.8523 22850.7595 32892.7595 8714.9937 388483.1297 31190.2498 19230.8191 27771.5737 21959.2404 26354.3927 583975.0405 38911.2516 42517.5201 57902.2936 96953.6745 96953.6745 15852.5431 41643.4153 23125.94 20864.7551 30188.0407 419635.0717 19807.381 28180.9045 31549.2338 25950.861 89918.0332 25264.8435 50569.7337 24040.501 36569.9749 26937.2967 36405.3905 62480.1312 157285383 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11584.0761 53588.2245 33454.366 6394.2801 18470.4126 7334.7314 4225.4263 4690.822 26872.2039 7653.4549 9307.3861 16266.5174 105731.9344 32565.7904 8229.2213 11054.5468 7346.5173 7346.5173 4642.911 12968.2938 10972.4123 10936.1961 8106.3641 11974.551 6917.7221 12181.5633 11558.7119 7261.9938 27046.9852 7768.5941 13429.5955 6925.7931 8410.4362 6097.9849 6728.4382 62137.9878 85831158 mer Metal Homeostasis Mercury Detoxification Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 5942.969 40993.3835 3207.3577 7402.494 4063.7399 2277.7718 2277.7718 6982.5808 5557.6821 7891.0671 2234.5621 3474.5013 47880.275 11680.5404 1935.8653 3628.9023 9307.0656 10642.1052 6264.633 74484309 cmtab Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 533775.9684 52666.7816 242664.104 150390.3315 239486.1638 201389.4099 35181.403 176586.1067 34357.0425 85775.9572 169594.4599 141959.0352 4251959.4693 99462.8713 238388.6933 96638.4587 77291.6602 77291.6602 55693.0362 135963.4546 46892.2225 102275.8031 145569.7424 30427.2615 84205.5358 42228.7499 59941.3749 65321.204 138899.856 59047.6471 74425.8709 146449.2484 72100.9668 108540.469 47153.705 71074.2013 111020426 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8828.008 6535.9922 3661.7135 3449.3684 5787.0985 11141.2429 3470.0101 76916.0476 9069.7277 5225.5968 2484.8652 2484.8652 5293.3532 9108.5482 8147.1348 6396.1858 4426.4449 6955.1901 3269.3816 2824.4363 9586.314 3239.8078 12436.5211 3293.086 18837.8902 3487.5317 5143.0461 5595.4051 12902.9261 8385.5206 308919937 cysI Sulfur Other NA Ralstonia sp. 5_7_47FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 53477.9475 37775.7227 37242.0401 65364.7935 76564.8197 1802494.2143 67645.5205 39797.5019 23880.5732 44593.8023 76295.3676 24863.0691 1053157.0874 58753.4974 54961.5574 49933.3945 45413.0072 45413.0072 40637.4402 95556.0307 48168.385 52173.7708 55225.6374 61294.4216 25799.6523 21692.3685 55317.3151 25721.4384 88668.3597 55588.057 79352.6933 30409.5935 59538.8531 31469.5162 28102.332 74735.4498 300390426 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 34379.6823 17469.9724 21464.8789 30137.4836 30961.5147 8151.9474 28703.6701 186996.9771 16021.8986 52599.234 40591.9118 41951.2833 2293020.3694 42992.0716 42236.3339 62528.6491 38691.1251 38691.1251 22275.1592 48890.0489 37972.1434 44343.0525 48139.2262 48351.5211 29048.8974 31015.0805 44237.15 146862.0415 65570.2861 49487.0974 53528.3735 30438.6396 31075.9185 31301.2223 40506.4211 157289.536 359733809 cysJ Sulfur Reduction NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 16930.7965 316863.7851 15752.2271 13442.0207 37245.1665 6682.8667 13920.3842 13944.8841 7997.1031 7192.0472 12813.2292 5418.2677 300934.9248 10190.8935 13450.5683 8183.938 5717.4955 5717.4955 39729.4945 31013.6919 15964.0149 10715.5777 16322.6652 16680.9171 6075.6138 178234.4866 23674.3942 7823.6571 27001.8365 12972.8579 19908.8529 11232.977 16296.8445 12070.0493 7117.6384 24450.2815 254475330 ben_bcla virulence NA NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 15677.3353 8459.3237 12872.3776 25569.7351 8944.1811 9294.4648 6349.8402 15736.9593 27294.6861 20237.427 373626.8168 19031.3179 16461.398 12979.7873 6172.5248 6172.5248 15036.2037 23955.7398 16271.1848 67660.6025 17324.3647 13391.2288 9418.9858 8442.1451 27605.1921 8860.317 33628.4657 10852.2681 27898.2999 9273.2661 9408.5581 12712.5306 7349.768 25627.7845 67540930 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 65425.8003 20769.1389 17733.3208 15427.5284 8070.7021 43522.936 43737.9356 12770.5729 91931.1458 51776.4198 36391.1552 2292349.3262 58393.8099 32356.7074 62747.9068 38602.2852 38602.2852 15752.7714 69396.6039 22103.5471 51014.6933 71572.5991 17622.8006 21911.9926 38318.2024 61891.3407 27977.08 72671.6724 18934.4572 46529.2567 17584.6401 28503.8563 39327.7331 10560.959 41089.2305 365899646 ben_bcla virulence NA NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 41947.2448 8505.0703 18803.9723 8301.1965 4025.8293 3694.6779 11211.0803 3955.4451 84206.2774 5379.5154 126234.6137 19006.7307 9336.2195 5599.3184 4654.4883 4654.4883 3473.5915 15719.0194 7970.5819 8755.1877 4792.728 5761.4098 3503.0362 5717.8273 14747.7895 5781.2666 16879.9509 9791.5962 13962.0491 5731.0184 6361.6282 11305.1349 4874.0714 9141.4585 84369762 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas oryzae pv. oryzae MAFF 311018 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 20624.5093 8750.0566 14371.1771 33723.4666 13787.2357 24582.9658 11011.8619 8338.7962 20235.7015 23719.6731 29173.1094 290871.6531 28127.8569 43184.7231 27852.1259 26461.7517 26461.7517 33500.3376 32701.5063 18981.4142 22558.2206 45608.0577 16561.7584 15784.9065 11986.4805 31804.4575 40923.657 59579.7441 35231.0846 161978.0511 15164.9558 41349.058 16399.1481 19055.694 24936.8407 192764410 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4567.1719 8594.5707 5677.6342 38566.8649 13911.9691 4302.7853 5611.7513 4468.4488 11911.0685 6164.8533 135403.1564 7561.8822 67051.7236 19695.4457 13355.7071 13355.7071 4649.282 14757.6816 7140.876 5842.0779 10644.4057 16686.7256 5416.4952 5253.3544 13633.0046 4939.58 22722.7239 12521.1393 10311.2393 5879.9912 4806.5984 7297.5072 12338.4361 15719.198 377565573 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 9990.8739 9295.4222 10082.3749 4517.9318 3807.9608 2601.0988 2081.56 4308.2562 9316.436 5285.9196 105134.7825 9262.8007 9042.7544 10137.5301 3734.8878 3734.8878 4746.6713 16403.5188 8287.0981 61767.9655 6506.2408 6363.0992 6791.6486 13862.412 7851.172 3794.1738 11810.3676 5827.662 11068.4827 2851.0647 7528.3772 8963.8369 4684.1177 6883.5995 337744638 beta_agarase Carbon Cycling Carbon degradation Agar Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4880.1437 6333.0959 6333.1457 5353.828 5987.1983 2604.9232 146270256 mer Metal Homeostasis Mercury Detoxification Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 26183.145 570770.3505 2769.4343 192918.78 5272.7221 4529.6082 4529.6082 5812.4346 7475.7928 7048.7637 6860.7969 3389.9384 6285.9613 2102.6036 319648916 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. BT1B_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4180.8028 6588.5846 2555.5073 2706.6735 4981.4933 2477.7221 3629.2747 2749.5801 2749.5801 6111.344 6782.5771 42376.2904 2630.2625 6208.1137 12363.2383 8974.9629 18597.0805 10432.291 3355.0591 3029.7676 3960.8369 317969557 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6098.8241 7221.4567 18858.4755 6320.76 34275.8867 7199.7073 6284.3985 10625.1258 10625.1258 10484.3869 5780.6267 4379.9974 2384.1248 8985.3279 23122.0145 2346.6331 5661.3286 8520.4434 4159.774 8551.7051 239820777 pcpe Organic Remediation Herbicides related compound NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 28193.195 12896.8031 7026.0042 218654.1938 15444.5075 29193.8451 77892.6867 31931.759 33749.6254 56446.7777 43613.7359 1766048.4441 28445.5157 31374.1204 65614.7613 39794.1311 39794.1311 11148.0374 46418.106 27219.9014 40053.4146 35762.9503 12604.9011 20123.6345 49863.1164 41040.9386 26485.1799 105822.0141 49647.8392 56126.9422 33958.793 53545.9565 83754.092 25629.7157 26975.8421 256380066 amyA Carbon Cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 55832.5156 53058.1465 52430.414 98622.3434 7339.7145 30491.4055 56590.3024 128360.5587 59343.3743 73128.5127 51599.8634 1244334.9632 53746.0489 37043.9475 36727.3126 53559.503 53559.503 28332.9487 61077.708 42030.0003 127509.5499 123777.523 69931.8217 34769.4347 25479.3804 70698.9457 22807.7548 83450.318 71203.1487 64478.1825 23813.2768 40401.7133 50319.718 25435.8478 56327.0361 134101896 exochitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 4925.8706 37692.3053 16131.9771 2314.6231 3565.1185 1940.0308 7544.9125 9399.9827 6027.1768 305921.543 5095.7124 11552.8427 6953.7027 7532.289 7532.289 5816.4664 11492.2146 9406.5743 16163.0243 6319.5191 10276.3232 4259.3306 6145.5817 3826.8662 18091.5959 9718.1548 10439.0919 5956.4671 7724.387 7858.3228 4307.9474 7249.0786 8777586 proO Organic Remediation Aromatics Other aromatics Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 16340.5973 2397.0499 9532.9704 3306.1591 143410.3247 6139.6826 5727.0847 17029.5962 2028.9017 13394.1443 134099364 vana Carbon Cycling Carbon degradation Vanillin/Lignin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 10640.6975 14584.9809 9102.6398 5603.7603 8570.4839 65536.4774 4968.9869 9971.0951 3945.8469 3945.8469 6218.088 3078.4396 5069.8753 7877.2428 5243.8006 2366.6694 2936.2541 13056.046 27453.9805 38373165 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6877.3153 6448.8146 9573.4626 7497.0242 4430.4833 5749.3608 5461.5924 10111.4889 4180.2921 154121.9043 8050.3481 11847.8454 7056.8109 2565.9498 2565.9498 9589.238 13648.1046 8432.4481 7983.8654 11577.5368 8802.3105 6375.6034 5778.9438 13366.0192 5445.2484 21412.0332 11623.3594 17578.373 6619.5414 6944.0887 6959.2652 4832.4277 10022.0567 329849563 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 8358.1343 205166.9618 5166.0179 79290.0437 81291.9376 9453.4003 4958.2674 3621.6555 7820.7539 8282.1415 8829.2153 139818.1016 8519.4193 7991.9565 10339.4851 6093.1004 6093.1004 6148.899 13998.4536 6065.1397 8820.3321 22190.3488 7790.1448 9551.3862 5491.9433 11837.5826 21320.9156 16658.8786 4973.4366 49730.0175 5586.4401 11197.8982 6012.177 3474.0401 14299.3326 302395418 RgaE Carbon Cycling Carbon degradation Pectin Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 4890.5126 9210.2459 364561199 amyA Carbon Cycling Carbon degradation Starch Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 24387.7592 12116.3923 283232.1812 11515.7666 4010.2101 3742.0434 11322.6107 5435.3272 11633.5169 9710.849 8003.731 264129.3412 28666.8708 17101.0515 11996.6216 11705.351 11705.351 5464.3733 18624.7221 9727.2331 14333.7862 12655.3437 20254.4744 6244.0857 9300.4883 10625.2975 3644.8203 45703.4867 16943.4235 93702.0697 5230.1706 9859.2977 6924.1038 4969.166 20397.7635 120603427 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 22600.1636 45958.6542 9475.7758 15080.6516 34115.0693 9319.2662 18181.9261 22058.8244 11587.9875 15271.4283 30775.0623 16873.7773 307444.6537 35348.0494 26074.1355 47504.6049 15971.2819 15971.2819 65516.5748 32265.6296 44760.7141 24935.1514 43306.9377 44017.9616 19276.7382 14772.5147 42058.3243 13465.3016 47047.0375 33420.4105 37130.9275 11046.6968 17436.7318 26325.8673 10712.6273 47059.8865 375144308 xyla Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 26429.2863 18368.4374 73999.7737 58960.7886 51654.8437 62932.0059 13276.3764 183396.9234 77960.8493 28383.1158 52886.7463 26589.2636 732358.5693 37795.4145 60530.0468 61220.3942 29821.447 29821.447 39849.7958 55778.8136 49938.1015 24717.5045 50525.0424 17475.7453 22502.5648 53902.3411 64115.2392 29381.5591 62536.6735 26856.3137 47347.2065 41968.6408 51463.2309 29165.1659 24437.6104 461644.4682 291565882 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 6932.2347 6150.6882 17780.9798 16997.5262 6881.4231 17152.0653 25883.939 7598.0886 20345.829 11945.4706 8371.7172 348418.9713 22265.1886 16639.529 13827.3153 9124.847 9124.847 13785.2448 35441.6165 20875.2191 18616.6795 29277.4422 30301.865 6938.817 12635.076 43431.7445 8616.1052 45025.7896 18299.0728 26530.7113 8158.3579 14084.1519 16925.7643 11820.3737 21933.0626 353547555 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 4932.3438 8263.2831 10287.4765 4056.0297 4787.3622 4756.0335 4148.8379 4998.1349 4208.708 122602.7496 7099.7405 6281.495 4250.1334 5594.91 5594.91 3736.2123 9100.7353 10299.4826 4979.3677 8647.5069 5024.6407 3068.9577 4381.542 19111.7129 3732.705 17988.3861 6456.1172 13405.8669 4321.7146 4209.7371 4466.2745 12693.6133 7723.8884 9656718 arsc Metal Homeostasis Arsenic Detoxification Vibrio cholerae O1 biovar eltor str. N16961 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 4066.1559 12312.3832 5139.5115 10898.5953 2905.7673 3014.1282 4933.6737 4577.162 2995.6164 81149.8916 9848.9672 8527.2091 9221.7066 4689.456 5049.4919 7642.5681 3602.9397 6925.2036 3103.4874 16060.6154 5591.785 8207.5834 3944.1914 3133.3056 8103.0043 3559.9085 7230.7037 144900614 arsc Metal Homeostasis Arsenic Detoxification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 28301.5998 41387.5628 9458.9877 18325.2315 22330.0019 5412.1748 11741.7076 14107.1188 8720.1096 16539.0393 17670.8388 10743.1617 396415.6301 27395.8025 26134.6283 14461.3277 10602.1865 10602.1865 28738.98 27140.3342 23187.4139 24832.0504 32468.9818 29961.7412 10789.8201 11910.8467 26685.0228 9426.714 64249.5959 22153.936 28614.222 12015.6676 13314.832 16412.9359 13451.0229 31958.1447 78693194 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15399.1248 5973.3005 3186.4375 202299.9579 3990.0363 2376.8428 2376.8428 2762.3431 9821.4857 9583.2334 2777.8403 7989.3418 7027.8336 11908.9553 6998.7196 7891.4805 2707.2169 5799.199 3881.3893 3070.4659 4706.1995 391879481 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 8994.6969 6863.4517 14649.5786 46087.8729 4593.8357 6397.872 3081.4701 6942.1995 6833.1108 5251.1174 139426.772 12745.1191 11648.8867 64868.7655 11461.8859 11461.8859 4053.1094 7776.2232 6713.3598 5056.4403 43512.8418 3685.3437 2686.4867 11714.2857 18340.1374 7826.8413 47831.791 11589.9264 14156.2304 9484.1984 18106.2195 7842.1971 15883.9637 16397.6732 281305577 cda Carbon Cycling Carbon degradation Starch Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 65122.7933 23586.2328 13088.2182 15560.6374 26081.4894 33188.347 22789.5463 31374.7362 42872.8426 27338.8545 99626.1765 684309.3386 24838.739 23326.2741 47611.6831 22593.74 22593.74 27038.4081 52053.0855 21964.1961 27864.099 142117.1174 25515.5478 23852.1277 18890.613 92917.8436 56304.6296 59914.3046 44964.0731 91270.3024 23051.3527 34172.5653 58935.9035 18997.9651 34045.4862 118592917 cmci Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7916.7608 192235.9629 49146.4787 6137.9558 4261.711 3024.5927 3024.5927 4130.2962 5309.219 5273.2294 339489295 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10043.995 54293.537 10081.6465 7146.5377 8329.1437 5360.7913 11721.9621 9506.2874 75813.4698 22455.6633 3873.634 5995.5024 4383.1179 4383.1179 4901.728 20946.5707 7095.9055 14182.6471 14096.9194 4218.2787 11923.9943 15484.4881 9174.501 11780.3707 18191.5812 9822.2443 10702.8149 7414.5638 9419.7349 8565.1101 14059.8739 12043.98 70988747 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 9599.7758 35746.2252 5401.018 20928.0575 3765.8434 4538.9458 4925.2817 7133.4009 149636.698 10824.8308 5743.5137 11297.6029 3571.0234 3571.0234 7114.8096 16125.406 8096.2289 5614.9277 10270.8303 5636.7908 4604.4213 6462.793 8820.6792 2866.6851 30048.9594 4415.519 11298.5691 2332.405 7666.5464 5090.8048 3455.982 9020.3572 312167192 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 4963.5528 6947.6052 15107.7254 21791.4202 12145.8404 8615.1553 3791.4083 7061.741 11280.6433 5679.0409 137224.8387 7422.0505 8233.2112 7454.2251 6963.7486 6963.7486 4983.3947 14322.4432 8099.0386 9113.6301 9462.1815 10080.3751 5268.4385 5030.7595 10386.2045 3490.8712 17565.6826 6874.3613 14694.2242 6181.6112 16937.0238 7990.6037 4547.2947 16549.2601 395227119 one_ring_23diox Organic Remediation Aromatics Other aromatics Citrobacter sp. A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 24561.287 18219.8705 12273.0233 23788.8392 22854.0597 5099.7947 19596.5997 112870.5688 14597.3727 14742.0221 22891.4374 32436.6207 733484.6906 23457.7619 45129.343 42567.9786 34385.4307 34385.4307 18384.2062 75928.4895 14296.1386 21111.5699 58708.7978 28126.0113 181841.6515 13103.6964 28394.1407 178988.6979 37254.0708 9585.0222 32341.3359 14367.9605 11897.5918 21285.9327 36071.465 82960.8495 344313833 linb Organic Remediation Pesticides related compound NA Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 50291.8765 16115.7433 12419.8449 7209.5864 16994.3188 9589.0686 12925.6468 6672.7624 8956.709 162004.1896 11949.7803 6958.2256 20743.0136 8816.3727 8816.3727 3363.7824 18836.2133 9168.7495 5073.0768 5336.2186 4644.0414 3757.9206 4750.6616 8247.5165 4624.9959 4509.0784 7140.7498 11292.0164 3081.4861 9053.1456 10942.4357 6546.7739 120593759 arylest Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7428.2532 5539.1335 8406.1051 13691.8467 4572.6984 4976.1067 2212.673 4851.9847 6899.3373 3502.03 148877.1076 9809.8069 6748.9084 4431.7 4569.0104 4569.0104 5201.5125 9547.0672 17833.2466 7274.9457 5991.2977 10635.8177 21612.6229 4819.2988 8924.2467 4868.8369 11939.6114 4156.9675 9649.6827 4112.5131 5213.8796 5483.7271 4755.5138 7545.4778 329850182 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 54042.3373 85679.4392 44709.4721 150873.7812 90964.0839 44141.9401 16570.313 60522.0338 14374.1471 29034.8071 38410.0608 30193.0867 1324600.0996 51281.2018 150820.1484 57257.1311 64572.4703 64572.4703 49079.9001 49749.16 33043.8248 23320.306 238743.6996 30313.7758 37293.737 32830.0834 55970.36 17762.5892 117260.7495 135844.5808 135893.6538 24975.1883 76404.0425 28080.6453 13146.6886 44198.4126 222438553 xyla Carbon Cycling Carbon degradation Hemicellulose Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 10583.171 36822.219 13484.0505 8955.3803 7675.2951 8183.8721 6680.3045 9700.3201 15349.5186 31172.1695 264900.2677 14088.2932 12567.5376 46304.6932 16813.1303 16813.1303 220599.1787 13068.7703 10076.8703 39153.9756 10277.2965 13629.6945 5501.198 6575.8245 24379.183 4868.2805 40823.7467 22371.7672 16665.6589 5790.0698 6857.1364 7432.1884 3759.558 12090.0661 161524486 atzb Organic Remediation Herbicides related compound NA Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9684.7947 11172.7196 13205.8754 5047.9071 14813.3941 2831.4703 4736.3044 8483.8385 2785.1685 113161.2695 4369.0715 6094.6433 6179.3729 7842.1825 7842.1825 3840.9341 10329.9306 6008.8064 4942.1458 5371.0751 10813.8695 3380.8381 4713.2828 7132.7973 8615.1039 12634.9896 5884.0722 11881.9313 6267.4932 12350.8148 13015.8558 5820.1194 7646.7172 220719997 one_ring_23diox Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 52912.5398 20981.1913 11834.9431 417721.4431 13833.4504 7350.504 76084.202 24488.6627 18119.0786 26608.3837 32922.0091 59735.4844 361164.4059 32068.3695 27046.4755 36982.5945 23471.5323 23471.5323 18828.0683 30343.7601 18374.9684 23356.1143 25622.4513 34920.773 31916.6702 23509.2065 34695.9393 50269.8322 260071.3677 14567.1935 28956.766 17339.9629 75767.9703 32174.839 21781.8436 37203.2983 116624835 RgaE Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 9395.0095 58602.7522 12791.2464 13317.5175 14059.0159 10801.35 6314.7092 14460.8394 16572.8679 182959.9251 19510.3283 12957.9256 16987.5304 27994.9842 27994.9842 3577.7939 20330.7273 13232.2141 9620.1635 179794.8024 5959.4038 6207.1986 8155.5331 13075.589 7902.3029 24681.0096 16164.6506 23842.3325 13594.1756 13578.8086 23980.6858 4320.2455 15592.2875 319783645 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 5443.5653 11196.81 2873.1073 5598.1347 5140.7255 3646.386 4522.108 2618.0198 3485.5813 16942.9843 6528.3944 6479.9696 9601.9338 3051.6905 3489.0516 4283.5638 112441533 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 13179.7528 11870.5184 248376.6358 152144383 amyA Carbon Cycling Carbon degradation Starch Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8062.4249 131033.6108 10363.3081 5275.7016 4795.6931 11871.5588 5758.7581 3867.8182 10933.8128 4358.1078 208673.3871 5434.772 6466.5483 3997.0841 2816.6665 2816.6665 9127.3864 5903.6277 8831.2749 6433.5098 6399.9939 2494.724 3585.333 8566.4778 6700.7554 13829.176 9267.6555 2296.0031 5824.3778 6261.3836 3534.9191 6173.0937 156049363 Sir Sulfur sulfite reduction NA Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 10050.0159 6339.7554 6602.5604 7664.2667 10935.6221 8172.9024 6510.4952 45952.3044 6568.018 97554.7714 9348.1934 8788.5028 7082.9783 12269.9358 12269.9358 6003.342 18331.3613 7715.6164 15513.1472 18758.4006 26447.0839 7675.6323 9475.5701 20180.0745 15025.0675 31608.7957 11222.439 13019.1502 7818.2456 9198.1129 7539.3564 8712.2888 12678.0353 300021641 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 3818.7084 2892.5706 2232.3973 4177.1604 3563.337 4796.7577 4088.0662 5726.7931 3130.2484 8292.9647 4859.5675 2058.989 2600.8004 1918.9534 5372.2915 145610030 amyA Carbon Cycling Carbon degradation Starch Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4347.3117 4367.2479 3053.9072 2365.2878 92782.6812 5222.8236 3201.0058 9293.6554 4826.64315 5900.1558 11892.1779 8596.0519 2697.58605 14300.06655 4738.0114 2532.03485 2893.66835 4280.0381 2730.5364 7441.95855 311286805 alkk Organic Remediation Others NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 156098.978 12195.666 5768.5036 6831.5818 2711.3706 4254.036 6661.3675 6430.1829 108190.5851 5632.3806 9289.8145 3231.0226 3231.0226 5221.7739 42687.1837 5898.0274 8752.6762 11904.2426 10975.214 4005.7412 4640.9652 12474.5087 4292.4136 15371.1451 6511.6768 11789.2144 4554.5117 3826.1038 15177.7532 6496.6554 10593.4216 270041649 gdh Nitrogen Ammonification NA Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 7775.9538 6635.8782 13045.1707 11762.52 2886.6164 3530.6612 3870.518 6831.9236 6413.0705 3444.4229 115191.7082 10856.4654 4541.569 4940.8344 2897.856 2897.856 4313.8004 10328.3623 7493.7965 23841.808 10788.8352 9258.4931 3311.5906 21105.5079 12730.4886 2663.8403 14973.454 4438.7245 8637.7686 3483.5806 5488.648 9193.9306 5031.1234 8717.0182 374847133 pcpb Organic Remediation Herbicides related compound NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 17919.2671 15287.348 11488.7722 9098.2524 12171.8123 10742.7924 4954.1754 15478.0814 12402.5239 8602.6929 318567.2405 16136.341 13782.4948 10919.6821 8231.8767 8231.8767 9423.7508 25008.8204 14441.6808 19854.4304 16561.4433 22561.3411 7844.8285 5979.8476 20886.9135 8130.5423 30445.0269 7618.5076 17799.0716 7385.5844 11409.6359 13049.3556 8424.339 19917.5379 156072118 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 7576.1332 6820.0591 8414.7577 5167.4611 3913.082 6219.4116 5363.4662 199913.052 6114.3761 6329.7991 3515.0768 3515.0768 4704.8572 7825.4947 6418.8551 9822.5797 10198.1467 8467.4328 2806.4027 4309.3355 9830.4343 3362.1354 10297.3866 8911.8056 8490.9292 2605.8475 6021.3511 6541.2101 3366.3473 13049.5209 398397217 pcpe Organic Remediation Herbicides related compound NA Zymoseptoria tritici IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 24987.7614 31285.8071 22966.9938 63109.0614 24718.2358 18702.287 20247.6673 15941.067 31454.0215 35347.2087 22447.8595 459337.1866 32027.4772 26078.5674 39949.9395 16925.0485 16925.0485 15927.9889 43667.471 27607.7432 21095.3218 30390.8445 25267.4931 41856.0893 27231.9663 27797.5813 11659.7607 176853.1965 104175.8541 44953.4639 14648.4662 38664.1314 45759.0141 16172.5845 55482.4242 189195828 pel_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4156.7674 766293.1575 6565.0214 3834.7616 5575.1845 29267.2379 4770.0278 8406.8324 38397.8151 2177.6849 16447.0809 2075.4477 4724.0338 3435.8405 7730.4059 373875430 Sir Sulfur sulfite reduction NA Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 17303.7702 17567.4118 7163.9631 9541.6612 53615.7107 7748.9442 25671.8198 11697.7957 10394.766 9915.2867 16512.658 10070.2959 765977.0173 19638.3259 13251.8972 11048.0445 8187.989 8187.989 9854.4184 17442.1327 15279.2212 5042.1738 34976.5687 19752.191 8385.1871 5368.605 21866.1886 7437.9664 30068.4705 10940.3136 16446.9471 8930.0297 11046.5014 9326.3114 12923.8366 22475.4603 353192814 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 80124.9653 13004.7194 10592.0869 71351.7865 51893.7139 11702.4783 22778.881 55767.9382 19144.8796 26319.1401 35920.6558 67483.1841 634046.5484 22470.2209 90671.6742 82414.3376 34418.6571 34418.6571 18336.2829 47773.9481 45335.1423 28553.0477 47900.4478 24903.7817 26969.8384 19402.4116 80145.3733 19421.0268 60477.6338 62671.5494 34019.5537 30177.5998 28460.9478 39191.942 14596.243 21682.3636 297151523 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 6257.7573 5313.235 7460.5317 3620.2888 6947.1144 4532.81 9982.6873 4216.4718 116792.3047 5766.0901 3745.1497 5300.3589 5495.8528 5495.8528 2773.6467 9823.0929 4758.1212 6435.9085 8301.3208 20387.6158 6554.7448 4603.4178 3935.8787 12061.8343 4900.7855 8044.8312 2260.6823 5559.2179 3981.4608 3954.0825 145231462 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 24863.4136 12450.891 20703.7801 19610.417 15892.9809 5843.2 19991.8057 17533.4548 20243.0065 22482.9219 12664.0693 539429.784 23912.9798 26090.367 15426.1402 10769.7657 10769.7657 15473.8777 26667.8915 22150.6781 28447.8336 24922.4852 12861.0386 11116.4671 24830.5871 28208.3279 14822.0658 12273.8564 87136146 chnb Organic Remediation Other Hydrocarbons NA Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 10901.1232 2521.0052 3134.8142 33410.7527 4419.9041 84575.3839 14544.0035 3969.7833 34455.3764 5378.6039 5378.6039 8038.3645 8097.6763 5470.2569 7232.7275 7067.9376 7099.6953 2753.4921 7657.3861 6830.2434 4744.5831 31836.6861 7435.772 9067.6288 3541.1457 4705.0669 5131.0996 3368.5094 17622.1043 374847618 ppk Phosphorus Polyphosphate synthesis NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 15620.0142 10333.6711 2456.2769 3795.8577 2564.123 90427.7503 71675.9676 5896.8622 5760.4345 13142.7725 2187.4184 1934.327 23015437 amyA Carbon Cycling Carbon degradation Starch Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 42509.9117 10549.327 5254.8558 14414.8898 14414.8898 7382.6408 110678868 norb Nitrogen Denitrification NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 17533.1329 16202.8724 6461.2796 158695.3415 18538.1228 7654.5247 3184.4924 4710.6937 15829.4816 4347.3257 140087.4725 8680.8802 13830.793 7216.5753 7625.1218 7625.1218 5611.8987 17644.7614 10636.1744 11192.7948 14457.2515 18881.5041 5447.5545 8435.1747 11400.3383 15031.7443 52504.2122 19731.1385 24660.9086 3801.9808 9227.028 12109.0262 4026.0019 21140.5636 120324164 mer Metal Homeostasis Mercury Detoxification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 5008.1038 73722.1077 13038.7385 6506.6708 6834.1291 6985.152 65526.387 3875.5306 34660.0723 4385.1917 4385.1917 4974.9057 7682.0938 6160.5733 4838.1951 4787.2027 4124.1057 6474.2488 4031.9839 11394.7235 4521.3953 7985.8581 2081.5321 9648.3274 6317.3279 3178.7819 4953.6176 148851727 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 30979.9061 812543.2017 40335.0679 138398.4419 10778.5742 26939.5481 19000.4668 29899.3944 18327.8932 16368.5371 70027.4177 519076.2688 52466.2122 15738.2843 26279.5626 25839.6201 25839.6201 13457.4911 19071.6811 15176.1997 38719.3755 28607.7799 22361.0172 15213.8557 13772.2543 28235.9697 9885.3352 41429.1399 108544.3149 23070.581 11395.7228 23476.3914 15514.8382 9573.4515 36273.2531 239627344 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 9533.5939 23401.6997 7604.3898 5716.0618 2745.832 6151.1047 3768.3347 67060.5088 4477.8697 5157.5779 5157.5779 4177.6363 11582.7653 4474.7364 8296.5558 2348.6381 10848.7878 2386.9731 9971.8313 34264.5544 3218.5706 5884.9757 3323.671 327165124 beta_agarase Carbon Cycling Carbon degradation Agar Microbulbifer thermotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 6755.7721 8109.2264 4154.292 3636.4078 6425.5975 7588.7657 8160.295 3753.066 100142.161 6842.3239 8044.3751 4692.6297 4692.6297 3885.4524 11610.6185 7454.5979 6849.646 10245.6136 9460.7152 3754.6882 3620.1163 6342.2715 4622.1643 13512.0417 8872.4003 8639.6184 4087.9012 4011.6861 8421.786 3645.4327 9932.697 333983357 mmox Carbon Cycling Methane Methane oxidation Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 58553.6403 33438.489 10541.683 162186.2614 5757.7321 23815.5261 50205.7615 204496.7609 35446.6941 31509.542 50299.3185 1049400.6649 61181.1434 40814.7799 50395.3007 58493.3269 58493.3269 60009.9313 75247.6377 35208.988 37980.3919 117240.9793 70558.5305 34098.7083 33121.0026 54333.0753 73118.8763 176378.7904 85265.2697 71902.347 66151.0555 66514.992 55364.079 30288.8369 43770.2522 347735455 FBPase Carbon Cycling Carbon fixation Calvin cycle Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 28478.5805 14385.6654 10379.35 14211.9609 8079.1322 8046.6313 3811.75 10824.607 8707.0285 11724.2493 160520.8113 12029.0045 13689.0331 6381.0472 4588.3051 4588.3051 12100.0471 21807.2536 14919.2272 14239.2285 32291.3016 12188.42 12343.0591 6266.9501 17087.3343 6129.087 38374.1742 14870.8279 21209.5322 12001.0231 9624.6895 10429.752 6507.8567 79326.8034 116248799 linc Organic Remediation Pesticides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 11939.444 7325.1871 2062.6346 3162.1445 33171.9977 7962.2417 9876.4245 11131.8375 106186.901 13024.9734 9716.5639 15177.8195 6272.5032 6272.5032 3246.0146 20654.7084 7892.4961 23643.0561 17986.8501 11401.6587 7641.5681 8070.206 12238.6883 6554.3474 40346.9717 4690.4844 9032.8313 3901.1792 6435.0308 18082.9247 7983.4262 18067.7679 365418589 urec Nitrogen Ammonification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6341.4908 8443.7646 2818.7815 3674.3302 2659.6875 4816.2056 5608.3321 4634.1467 91116.7515 6853.5324 3860.0392 3998.361 3998.361 4976.1679 12042.6003 7408.8994 4869.0837 10531.848 3183.7986 3356.465 10592.0918 3037.9329 13341.7603 22584.2309 9319.1472 2485.2168 4900.4853 4546.3306 4904.9439 10656.8968 82568644 badh Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 13469.2621 3044.567 3433.8618 2021.033 4675.0892 6412.5182 4453.8449 208421.8581 6679.8631 5204.4467 2363.2682 2363.2682 5115.7157 8969.5068 5437.3142 4262.2576 7687.4936 4051.5404 2926.6408 7847.6366 3840.2482 14409.8109 3671.2002 7910.2062 4442.68065 5779.4238 6442.8064 3516.0855 7802.717 302558302 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 28221.8985 257477.827 97220.5183 7635.2953 38090.2491 21657.9437 18486.646 14372.1075 18506.6704 13043.7645 188574.7131 42067.8983 34792.1735 62074.74 17486.0932 17486.0932 24642.7141 46115.7202 29559.1346 71979.683 113510.9219 30014.936 58410.7841 16383.6575 25030.7778 24707.2464 88541.1728 62529.1351 31042.558 15351.2286 29144.6628 43530.6844 16958.2387 50324.097 74053812 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 20250.9494 16963.0618 16104.5626 11051.0338 20786.8957 10071.4898 23222.1481 5389.991 40454.7254 32321.9759 16176.9917 534759.9816 23656.4227 27230.0516 41400.9335 17347.7661 17347.7661 10659.593 32789.3014 25687.8387 16170.7749 18363.1968 22962.9837 9402.3391 18295.8905 98207.0959 13094.1967 64870.7068 13544.4285 24778.4696 12990.906 27874.1974 17858.514 10942.4868 20517.9654 119525483 amyA Carbon Cycling Carbon degradation Starch Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 88221.8043 33728.8697 38675.7865 676480.9711 137009.8465 229055.741 45000.7227 306300.1721 140823.5218 84423.3945 88890.711 70488.1184 1968996.3688 98471.1049 106981.0484 174885.9107 88026.2717 88026.2717 64964.314 56696.2769 47216.7596 102387.6962 75844.8063 88244.8154 37217.4239 75450.1829 83310.4875 41159.9324 153983.6758 86211.0437 100274.5323 80834.5049 56198.6433 61270.8788 39906.2479 61284.2372 119817678 terc Metal Homeostasis Tellurium Detoxification Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 17056.3698 10727.0386 10827.5671 12805.434 10199.2046 5749.2795 14213.546 9365.002 8840.5637 13522.1768 14588.3544 7644.2044 320887.5625 18296.6456 15304.0142 17841.9886 7394.4205 7394.4205 9882.553 25519.2345 15619.3152 14024.4918 21566.078 24677.8254 9651.4025 9130.2633 18043.5929 9478.1918 29641.0583 7519.0281 17944.6578 7713.8961 9462.7551 11877.3704 7841.7568 21738.5285 115397155 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 4609.7044 5575.3626 1965.2174 3498.0521 6115.4912 6115.4912 6694.6157 5582.9373 3893.9321 6820.9774 6164.3711 2491.6319 5769.8784 4082.0411 4649.3085 6690.1599 2664.2563 2920.8979 29160351 exoglucanase Carbon Cycling Carbon degradation Cellulose Poitrasia circinans superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Choanephoraceae;genus:Poitrasia; 13257.0215 6328.79 9946.1186 25207.348 9191.7237 171851.544 14537.8742 6773.2036 8606.9578 13433.9153 6773.3479 944937.872 23210.7686 9212.0849 6709.1349 5447.2638 5447.2638 7289.103 27909.7017 11117.8161 9373.5505 13801.9462 12823.7372 6194.1288 9438.7506 34432.4422 12550.9824 28216.9738 16244.7982 15955.8279 8060.1354 13506.4964 16891.0146 6446.9787 16170.891 403654899 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 5677.8351 36067.3025 6738.0714 4725.3662 4470.4567 6631.9202 6687.9355 6827.0713 12195.1314 4511.6659 5225.4188 5450.8918 5450.8918 4114.7835 8490.0823 5137.6287 5960.5191 7083.4082 3629.7082 9876.4809 3901.139 24567.7506 5591.6292 8086.5627 4115.0591 4240.5128 6095.3619 4323.7174 7021.7842 259168354 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 6175.7211 7137.962 2978.2022 2941.1176 3196.7533 4060.598 21153.8558 2965.3259 102787.7053 5796.5026 3469.6702 5778.0685 5778.0685 4171.3627 8470.2321 4321.7508 5036.5319 7408.3614 4914.6636 2378.3663 7886.4077 2708.5359 10775.6763 4690.6182 7276.7 2242.1557 3598.4908 7173.7593 3201.2565 148750447 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25550.5181 5823.5032 9567.9143 13461.1187 6767.4243 3353.6866 10779.9588 7269.1863 32103.7155 104157.9166 11120.0415 9568.3155 8282.6259 8918.7 8918.7 6005.7271 17145.2425 13156.5583 7702.521 11650.22 14068.0159 3920.3589 6401.2839 7992.0181 5065.4204 6062.6826 7850.7332 11505.4965 4113.4378 5418.5101 9570.7507 5461.3982 10572.1691 307743485 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 40344.9527 5761.7224 2443.6229 302783.4781 6220.6571 17111.0402 9299.41 78781.609 11458.9754 41355.6416 4006.0281 3191.9355 3191.9355 3043.3966 10648.3524 4752.5372 7633.8908 7062.7169 7807.955 4453.383 5123.1375 9790.9856 2166.2779 18988.6107 7391.0887 9448.984 30926.7238 6168.6602 6202.2631 3036.9446 47572357 phn Organic Remediation Herbicides related compound NA Rubrivivax gelatinosus PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 65462.395 5338.6425 13010.4253 6881.1419 34107.3313 5803.2892 3859.6055 121199.8809 6943.2975 7147.9456 4674.4667 3457.3045 3457.3045 4662.854 18424.8495 10013.8619 11658.9703 23666.7938 12992.008 3363.429 4559.7211 8398.8819 4743.9742 24442.5986 8571.9209 14857.0638 3557.4148 5226.3258 4812.7469 4760.253 16200.1129 194307174 amyA Carbon Cycling Carbon degradation Starch Enterobacter sp. FMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 60499.7501 225479.1299 11267.5814 9929.8781 15324.0634 8374.691 18230.0506 11136.7097 18075.2258 6634.9798 269954.8121 10652.5505 14176.4146 4701.4728 5613.1532 5613.1532 10802.5694 16821.1769 12864.8087 13447.0358 18688.0128 12424.8347 7911.6822 6383.984 13223.114 6851.6729 26326.1083 13908.9059 16780.0703 6094.3489 10573.4821 10259.1252 9471.1094 19718.9463 62086241 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia sp. WS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8479.9909 5904.9682 3741.6644 3258.5995 5062.1688 5551.9517 2501.5295 89550.4821 8128.0402 8751.0651 2248.6392 2248.6392 13057.87 14146.6744 9765.8561 5081.9636 4312.802 3522.278 4496.3943 10767.7134 2665.3825 15211.4545 6768.3151 6739.232 5647.1361 5087.7235 5900.2514 3402.2535 7469.2966 357022658 amyA Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 64160.4696 29657.1636 5262.0752 15626.58 6210.3582 33992.838 9480.629 9299.2586 6299.8389 20796.0893 34821.0566 468247.7258 25120.5648 17452.8942 20529.5305 17921.2715 17921.2715 20188.0575 302319.4234 18045.8246 25360.4662 57277.364 9132.0125 80492.4041 114632.7111 17144.7635 23693.0238 84184.8628 37329.346 23749.8165 7719.3006 36568.7181 18618.9842 15676.9129 17234.5684 329120545 linc Organic Remediation Pesticides related compound NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 431658.4317 373338.9806 363838.8723 390901.1742 241279.3944 324815.5121 425357.0429 399331.2645 263189.1597 558913.1199 302388.8463 223462.1453 6608109.2636 325957.4193 334163.7819 817258.1203 443640.662 443640.662 241242.2046 369040.1525 274499.5976 360001.8184 443748.7534 405562.8815 235463.7097 227439.1864 303160.6463 292037.0624 680781.5561 433570.6544 343812.8178 282674.3595 282512.3977 322489.6522 249671.4371 565729.8337 146217337 mmox Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 23450.2359 2769.8712 19602.3736 3480.7022 16570.9948 13826.2984 21712.4606 70200.8757 12409.5709 25179.1257 28256.1581 10369.7347 10369.7347 12794.3661 13565.1812 9540.2087 48504.2543 19581.6365 33206.0942 7814.1558 5103.4099 17521.9383 11014.5853 20674.3081 15064.2024 13635.0279 14688.0763 12828.5039 11773.9428 15368.5062 9520.629 339629717 sqr Sulfur Sulfide Oxidation NA Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 6192.3924 5101.9914 3839.1115 20381.3504 108994.6384 3842.8387 2775.517 8502.8535 4993.5537 3198.2547 2529.9876 5502.3693 12893.3816 5424.4087 3044.4055 3903.9718 4839.6503 118740910 dmsa Organic Remediation Others NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 781619.9902 10280.0372 12642.7374 7530.1953 3434.9245 4601.075 22944.2456 3739.2783 74144.9421 2674.8899 8429.8937 3468.4753 5555.1075 5809.9467 3479.163 2643.0855 116698348 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 65137.2853 16989.5072 54774.6883 41756.0452 42701.7439 10891.1364 30169.5047 70522.8881 41382.5208 45699.152 58659.9938 39606.1404 1169583.332 60215.2543 67188.2747 92335.1748 37094.9713 37094.9713 49085.3613 101644.3289 77934.6112 119941.6045 96875.8581 68333.6474 28293.8706 35591.4493 54140.9404 28210.086 103551.9978 38524.8482 59181.618 25023.6361 38483.0978 48048.258 31869.5073 158645.2675 357583310 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 38099.6447 17011.1842 30020.6664 34832.0168 29741.909 8324.1735 63844.9309 19856.1189 16465.9177 30400.613 92480.9311 18492.3321 874137.4386 40395.746 38285.4319 48483.3559 85485.2539 85485.2539 27217.6434 41671.0315 28960.9294 34279.916 39513.8528 51749.913 17635.8821 23772.5917 39091.0088 16375.8123 58625.6725 17828.5237 42209.326 18528.2437 23261.368 25671.2555 16131.6494 50256.692 115383217 nirs Nitrogen Denitrification NA Comamonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 25236.1671 22280.6224 5008.9596 3275.5899 4560.8313 7855.3644 8947.10375 5130.0295 68647.7996 8124.1682 8366.2416 10076.9093 12178.7074 6082.472 13363.9362 3133.8634 8208.8818 3487.6488 45264.6836 7024.5087 13071.4018 1877.3914 23148.275 5665.538 4283.5039 9879.4801 151302120 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulfobacterium commune superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 91180.7915 1089413.8962 7443.7039 66199.4211 9991.4259 4859.7183 15601.0509 11512.9387 8729.4118 8422.9458 11283.4951 7795.5738 367523.3832 13425.4684 16635.7985 8282.6026 7014.2547 7014.2547 24344.7959 59810.9149 19243.731 12848.8033 20165.8785 24352.622 7685.2756 9688.2775 22511.3774 8860.5201 45684.0779 10855.3452 20661.5858 11783.4434 15166.6587 396164.4741 10534.4024 18191.663 147886212 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 16166.8603 10025.9417 26868.978 31859.4035 6881.5262 13731.5753 9069.166 19567.4292 18395.3306 26066.5786 292993.8073 27109.8314 17206.4881 11028.8639 20363.6427 20363.6427 7675.6204 28597.9487 17759.5461 15964.5639 27850.4426 12162.4509 10172.7517 16063.9912 26595.8191 13090.2268 48823.8769 53162.3744 48116.8904 14264.8771 23037.2111 22560.2594 14825.2183 21095.1982 291424984 cda Carbon Cycling Carbon degradation Starch Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 78980.6559 28601.1397 916903.6941 53391.3892 32577.5715 14254.8451 54871.2077 75962.4298 27214.6588 40523.7302 60540.4042 29053.8952 1763473.5736 56180.8127 45558.9121 42176.4045 47023.6477 47023.6477 32505.8425 105004.9917 52516.513 42178.7127 69342.6808 108174.4519 46789.4737 83672.177 140377.9151 95421.0507 149263.1924 48298.8601 56295.6004 29859.5133 37492.1013 41530.0585 29062.3148 90876.7532 256358127 badh Organic Remediation Aromatics Other aromatics Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 18199.1909 10674.4715 6719.3846 2731.776 8885.6865 12832.1429 52478.9532 187533.4667 10031.4515 10969.9077 9260.3386 9745.8709 9745.8709 103470.9572 24376.5891 20437.1979 5796.946 13154.208 16262.954 7119.216 6228.4458 27127.7611 4665.4736 33752.0504 18148.5802 33822.1408 6253.2135 9353.8844 23337.742 12803.5486 15126.122 390411342 amyA Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 24536.325 22121.8956 6182.2537 17892.9522 82152.121 7632.5836 17945.0509 11007.9165 142672.5753 20689.8341 9396.6665 46437.9518 12459.1626 12459.1626 4098.9408 14454.2082 11834.8127 7025.796 15714.903 5161.8815 9137.9537 6994.6724 9476.4812 87422.9166 32083.6698 20695.8516 13351.2162 4406.6382 8410.1479 12190.566 66088.5369 5723.9713 261380404 cysI Sulfur Other NA Neisseria subflava NJ9703 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria subflava; 4392.1162 4203.5872 2064.727 2519.9824 2082.9924 4514.2215 4496.0218 97623.5812 3364.7765 7542.8928 6172.3574 4418.655 4102.2563 2605.9156 7335.1733 3765.5819 11689.1127 6253.1305 3179.1301 2783.6746 4433.9471 10766.3228 4544.7382 334131547 FBPase Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 6284.063 6302.2473 5525.5314 10841.6701 9073.5766 4275.6208 2478.9593 4805.115 11514.5061 4406.9073 107311.013 23535.5266 3725.5008 6223.9231 29544.0088 29544.0088 2446.3968 109471.1433 35353.6102 25145.9031 16007.0064 4116.2178 2697.2244 7363.0273 8391.0499 13495.5351 10651.7041 3660.8557 8826.8834 13272.1992 5285.338 10763.7731 260173517 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 31455.678 12776.1897 11252.4643 60056.0147 13083.8176 9884.3095 245088.017 4941.4444 69653.7704 346271.4946 21807.3685 355930.7625 40822.1659 22098.021 70956.7646 66927.5085 66927.5085 9234.7035 37859.6047 39874.3082 98685.6053 19584.1457 20295.8086 10617.9274 22183.5836 20215.0103 52084.2842 48438.8116 30740.6195 37135.1481 27450.6935 28611.2176 41293.7188 28321.5541 14696.6083 52631740 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6218.9558 4080.5205 2878.6283 2187.9056 125775.4184 4581.1708 4603.2693 4603.2693 3771.3859 8787.5306 4282.3421 5571.422 5024.4059 6216.5708 2880.8359 3272.5476 5896.2396 3133.6544 9377.4857 5270.3544 3003.7228 3881.5495 4039.2268 3393.5064 5705.1871 88792323 amyA Carbon Cycling Carbon degradation Starch Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 87922.5744 101377.6657 3377.0029 11176.759 2595.1183 3299.3151 27557.7296 49818.3284 5288.452 3178.5897 4967.6039 8120.1522 8120.1522 2790.5654 18204.3543 4920.0762 7390.8134 5061.3054 6190.6892 5652.849 6522.1532 7625.6146 8366.3305 4161.5863 10355.4847 2597.9698 3114.3837 10523.8121 5638.9819 4605.0788 268310717 cutinase Carbon Cycling Carbon degradation Cutin Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 20321.6533 16561.4835 19403.3793 14628.4672 18242.4947 13508.1173 8076.0555 15145.5089 42767.367 13052.7865 403356.2539 19364.0993 18467.7112 14213.5009 12244.5029 12244.5029 15032.522 32093.4854 15905.7644 23902.97 20729.0471 20780.2527 10285.2929 10519.9236 21184.8232 40239.6974 28977.6392 18420.0453 28849.3337 8658.1088 12596.5965 13820.2664 14245.6573 25653.3749 297192306 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 28590.1704 2723.7944 3812.0299 4940.1907 8386.9514 7273.6666 6172.2159 82884.6659 11669.1926 8955.0867 8252.6302 13422.6662 13422.6662 5550.4844 15129.9545 5751.4522 29350.7246 37723.0072 5407.1732 6221.9981 5918.0362 7170.1329 8652.9651 33988.3271 7573.4535 12840.3087 4096.8884 8422.9976 11731.1319 4717.5967 7596.7652 112463805 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3986.8241 42423.5418 2171.9162 5470.6898 5083.5294 2344.9427 8231.141 3825.4344 3954.7368 5301.7288 5654.8006 8919.9149 3632.3879 9966.8953 3074.7598 3749.6079 5707.7938 2645.0929 343927723 narg Nitrogen Denitrification NA Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 30116.9812 54230.3508 26078.4055 3518.9162 6308.0882 4584.7105 6179.1655 11377.9334 5356.6965 7411.3622 4440.2149 4440.2149 5972.1511 10647.1718 6489.8714 8789.2183 7287.589 2519.6609 4047.7388 7445.7345 4818.3373 15574.4254 4934.898 10359.9349 3200.4997 6369.2283 8143.8637 3243.7382 6799.6345 373893443 amyA Carbon Cycling Carbon degradation Starch Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 6002.7278 5027.5163 3539.1421 21729.235 2116.8214 6274.5031 384920705 phdci Organic Remediation Aromatics Polycyclic aromatics Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 36461.4676 44502.0398 9765.5348 12624.6928 80845.2217 15173.4279 34526.486 24952.4223 255735.7383 25699.5935 41375.1552 65868.0978 13166.905 13166.905 13139.7294 28496.3086 33132.5474 23718.6329 22618.3413 10223.4319 10458.1155 28555.3955 43534.1795 24812.2784 74822.5517 15999.9002 17722.9484 15984.515 31054.2957 32150.8452 102470.2142 32485.5334 118473530 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 21539.9193 30531.109 6770.5682 5620.3096 37347.5926 6211.634 10721.933 2827.7604 9211.4304 5859.0256 18648.9836 331897.4767 36326.2073 21306.3375 13956.7514 29000.5589 29000.5589 167589.9179 21714.1244 11207.236 7770.4579 63793.1622 8862.6766 9340.3349 19736.661 8762.729 25383.4236 25450.1576 18494.6826 4225.0298 7844.4024 47667.0908 16383.8635 15626.9323 359402470 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 30552.1606 14296.494 13278.15 12882.3516 12717.03466667 4597.9139 8783.94626667 7105.26113333 7542.29356667 9032.23296667 8106.96283333 7780.65413333 180514.76613333 12537.0241 11235.88206667 9010.3749 5432.83396667 5432.83396667 6818.5764 22804.13523333 9708.23726667 16441.3724 14576.00116667 10935.19223333 13072.5525 7449.8253 11858.84293333 6842.80486667 23955.7969 10183.1268 12845.25743333 8967.59313333 7270.87523333 7500.7406 21896.21546667 14314.5783 115520245 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7963.7914 13050.3697 2761.5955 3308.8335 6697.7162 7307.8254 4131.8983 76360.7897 23291.1743 6710.3703 9182.0461 6364.2661 6364.2661 4468.5943 11044.08 10731.7233 6356.0348 14991.8082 5090.6706 12495.6293 3878.3389 28729.2868 22398.7508 10701.0824 4231.3984 17775.8774 8851.6141 8679.2951 12317.6307 374574058 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4538.0855 6810.1005 8281.0374 3511.6947 9576.7286 38341.8837 4884.7366 5685.1936 3162.8344 3585.7378 4104.8163 13939.2547 9642.9142 9642.9142 10098.5355 10658.4006 5561.9356 2610.33 2977.167 5706.2479 5391.094 17129.8071 6883.9681 9123.0984 4517.8594 5839.5909 165557.6583 29223.5593 400195032 nbac Organic Remediation Aromatics Nitoaromatics Achromobacter piechaudii HLE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 4805.7059 19773.1042 15949.5943 7234.8106 3218.743 15648.5026 12791.5855 8526.9823 85434.9046 7874.4417 10285.546 6607.9331 9719.7295 9719.7295 3613.9104 11081.7717 4724.0537 6514.3001 11601.8256 15228.587 2771.4765 7471.4266 5950.4589 4265.0724 28364.7328 13045.5832 15151.8484 2187.0627 11052.2909 7317.4895 4708.8376 5441.6139 261361667 ligninase Carbon Cycling Carbon degradation Lignin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 6881.9282 9293.4241 12482.6095 5444.0112 3707.2014 2357.3122 3305.1652 4680.1442 2725.9737 85847.5091 9858.1606 3895.5664 5063.1872 3537.8009 3537.8009 2706.0095 6693.0687 5329.0136 6506.1224 6582.3948 11863.9537 4328.4559 2962.7395 8495.0591 7856.277 9967.1674 10035.8252 2172.2756 4673.6038 4484.6302 4761.7723 8839.2306 220911949 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 424319.647 171465194 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15382.1976 9716.8926 16343.3804 79833.4007 28148.6681 10588.3276 120732.0544 104270.6245 30372.3771 30589.1183 83368.3607 419732.8799 31183.5347 44840.8011 135473.7689 51843.2553 51843.2553 38632.9743 123143.0933 31965.9997 39967.2287 108935.367 11106.403 41118.904 35600.179 62826.3978 28400.4733 120638.5788 39533.5346 44427.292 16533.4425 62539.0358 45577.7108 16888.6009 377226.0462 385739146 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 65332.708 6797.8984 2864.3893 16598.4077 4424.6839 5104.554 6278.2294 5051.8406 5051.8406 3662.2926 6802.6566 5237.7609 11605.659 11402.9188 7852.8308 6374.3297 3022.3171 3120.6128 372474454 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 13087.4845 36078.4842 26142.8411 8324.0242 5797.3519 18199.3479 149982.7685 28401.3106 23495.1296 22579.2601 152588.3129 9204.3712 19998.3216 10667.9386 12767.6144 12767.6144 17814.5475 42406.3773 34812.389 22609.334 53641.1213 18373.8299 93059.6454 11615.8356 14473.3674 13774.5428 367477.9906 33632.0108 25474.6321 10239.7411 36902.1776 30502.7012 26398.733 17981.0686 146335703 aoxb Metal Homeostasis Arsenic Detoxification Agrobacterium sp. C13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 10537.2424 5641.0732 7094.8212 3821.3079 5428.6725 8329.6905 11300.83 12031.7548 6864.5439 238785.945 13139.2731 19215.7083 5561.7108 7838.4971 7838.4971 7705.733 13951.2463 13435.4599 12209.9314 16634.9947 9325.7344 4794.7811 6292.7926 13981.1235 5275.7795 21499.0959 7781.9827 19930.7102 6658.9498 15187.9767 11010.5532 8378.7118 15266.4944 317114501 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 537421.2085 26865.5041 45260.6229 128715.1099 7247.074 11729.5539 19185.7035 33777.4643 21573.6932 24178.8507 18570.7538 375508.1047 719324.3596 34479.7266 27083.4234 19853.8989 19853.8989 18635.3139 40910.3557 22785.9337 25909.0128 33191.0826 106477.3527 93015.6436 26435.148 29344.8353 17597.6683 354537.1095 48392.8157 28612.1232 25529.2253 21721.8825 29012.0636 13168.0397 21842.9432 39997196 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 80473.6761 11410.8448 14479.4134 19022.9007 5569.6397 9138.4101 7792.05 3605.1564 10033.8139 11747.3473 15088.9599 134404.361 15772.1481 71611.3226 13734.4169 10746.9049 10746.9049 8098.7354 16075.3759 11806.979 16737.1143 12087.2242 10612.416 10079.1356 7159.6758 12607.5089 5264.618 93257.0472 20036.7252 22937.953 6407.2959 13685.6732 11220.9699 14604.8977 10866.6511 92109254 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 648287.1872 23696.6014 14257.7418 30957.4532 9495.8793 38629.2869 48864.0156 16981.293 49586.475 80640.3648 36651.7824 39387.4611 87459.8718 42639.1211 47015.5813 47015.5813 23962.3905 65139.2115 39223.2579 32319.8659 62544.3899 50988.6516 34685.7418 38223.4579 47602.5187 48387.4156 120043.9492 57571.0304 24279.4608 50208.0525 42963.6517 22715.5533 72754.13 72397860 atza Organic Remediation Herbicides related compound NA Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 60404.7424 107170.8347 2788.8317 92184.1772 4461.3816 4424.1492 5828.6472 5676.3035 43298.7878 326382671 xylj Organic Remediation Aromatics BTEX and related aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 20966.9806 8057.1758 14479.7871 18743.0419 5678.4276 8965.3872 11036.1764 11418.1533 12720.9593 16999.6701 17972.0191 225064.5286 17656.1692 14567.2809 8099.6335 6052.7644 6052.7644 21374.6336 81301.2989 16983.0865 20659.7083 14861.598 23610.2467 10263.9642 9535.8182 25146.3698 7726.4928 29252.8183 17734.7237 23079.8783 12386.4594 12227.1432 13646.6989 10021.9925 23379.8529 94471207 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23968.251 12428.2779 19101.2307 22383.5711 10003.6371 17015.3475 10203.2225 7139.3262 16588.7272 16518.3429 124706.9683 344332.3369 16141.7458 15638.7409 15497.0762 12382.155 12382.155 17766.1285 22433.6183 11863.1806 12655.318 68178.7764 27773.4716 7448.418 48937.191 22323.8756 14113.1011 56217.7324 18565.9422 44498.1699 12724.5742 15442.764 19362.8194 12939.25 26527.895 15612817 urec Nitrogen Ammonification NA Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 62794.1059 58495.6825 3848.021 3831.0887 186464326 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 4112.9061 112462915 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9799.4489 4542.4352 3186.475 6993.2763 5632.6663 2342.2192 63884.3847 6249.692 5041.8986 3286.8904 7897.8597 4630.5096 7909.3887 4187.8978 2678.594 3494.8868 6543.6642 3196.1311 10001.6947 7016.698 3159.6788 3159.5149 3366.6207 2696.3839 5888.2204 333442362 PRK Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 8374.5558 15660.105 8710.9219 8965.1442 77105.5611 37963.251 12416.6995 33376.1277 7932.1112 8950.4753 4932.1922 174687.8362 35220.5463 14860.5386 17529.7048 9813.0467 9813.0467 5758.7476 10643.4479 6841.575 336597.4666 6787.8754 11181.7102 5533.7066 6273.1441 16429.0194 29649.7088 14741.8082 11073.8487 13831.9617 7538.6656 9656.8308 6185.6026 5991.7754 11628.4841 383775320 mer Metal Homeostasis Mercury Detoxification Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 7046.4903 5046.9063 2927.3027 2562.688 12592.8477 5363.934 3334.3465 73455.1843 22392.0986 22392.0986 5719.3754 8924.5544 5984.5977 9452.9349 11631.6761 8357.8264 5099.8024 2781.5561 12022.425 7949.1879 23388.4265 3836.4264 5560.2339 11196.961 3185.9454 6918.1697 327301944 glx Carbon Cycling Carbon degradation Lignin Trichophyton rubrum CBS 118892 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton rubrum; 9115.6776 8025.5644 15394.6338 15353.3947 2293.7138 6690.38 4768.2693 7338.7408 147735.3029 8938.7552 7538.7193 3885.5409 6030.7968 13184.1445 9038.1472 8878.0264 10322.0416 8478.0477 6364.6277 4838.3415 9337.7571 3170.2615 16984.911 7579.0639 10610.0678 3298.7904 6801.8357 5896.1804 3167.4574 13521.067 238715525 amyA Carbon Cycling Carbon degradation Starch Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 143718.2458 49394.3634 113018.5949 153168.5191 94084.8272 39415.7128 114115.3393 94836.1299 65384.049 84215.598 150774.5777 144454.896 2008377.1479 128861.2312 148553.4191 174754.0953 184716.3834 184716.3834 71953.098 237140.6217 122054.3492 155910.273 138041.5963 497092.4089 146751.1153 188257.8182 107514.2538 72976.5239 287029.58 102677.8265 296124.9015 64974.3396 151224.5395 88170.1007 58952.1239 400248.745 346991791 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4862.1392 4997.4689 1971.2318 12269.1095 1875.6105 1875.6105 3105.5547 7202.951 3684.4319 6492.9002 2709.797 2560.0255 4065.0308 67524979 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 10289.6631 56299.34845 11003.377 103107.2662 51371.0471 12814.254 13652.7902 3911.2322 36197.282 18488.7495 11773.8376 334183.8785 19237.5087 24497.9116 29767.8606 22230.6211 22230.6211 5516.8311 24570.4167 20200.0702 22176.4074 13233.1991 24935.4418 7131.9704 17324.6587 36111.3758 18100.1822 58830.1823 23349.7368 26886.0083 10769.3157 15205.2927 10974.483 6911.5773 17751.4366 304404944 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 5535.7844 7703.1427 4369.2794 5019.5939 6582.4157 5563.9222 4122.9308 4731.6185 8558.7607 334753.7082 8035.5912 16542.583 4176.9328 4187.031 4187.031 6513.1813 10786.3832 6418.2694 13573.5509 5710.4227 15581.2851 4829.7452 4567.4788 6783.8205 7763.3982 49284.1041 5065.1889 7180.1272 11379.6123 6047.5482 9485.278 13693.8114 11068.2378 359839957 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 11105.8801 12688.3323 3079933.6765 5919.4831 2624.6572 2330.5698 5919.8032 10038.1903 20617.5541 85384.6381 7263.4346 11899.4222 6460.9524 3565.2244 3565.2244 5334.4744 8906.1823 6408.8728 30665.2882 661319.152 8321.749 5095.604 4244.4476 8182.3151 5592.125 1104234.1844 9328.4905 13722.071 3770.9121 40007.241 5716.0598 4942.9771 5851.9793 269832894 chitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 44076.4729 4829.3486 2983.5888 83022.561 11608.4928 2870.4172 146223.7253 3839.8922 3839.8922 3450.1255 4270.8034 33586.6247 7647.5069 3202.303 6398.8419 3679.8668 14423.8747 9463.4762 2488.8422 6395.3663 2970042 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6953.4958 54581.4019 6914.2435 5388.1218 12468.7957 114608.7186 7525.3906 9704.0391 5285.0633 5285.0633 3453.3082 7697.7945 11293.2096 4766.3922 6259.8385 4247.3729 5309.51 29101.4113 45666.35 2825.6778 18625.8329 15251.5816 5986.9144 3142.4934 7036.0153 7292.8379 7694.0922 312218852 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 15300.4246 5996.3784 18694.6337 11101.9793 3897.0075 6398.5238 15729.3329 4267.7481 189317.1525 11611.5232 36244.5413 6543.8675 12024.3951 12024.3951 3514.2522 20175.4299 77082.9338 15842.9118 7713.9068 11312.2082 4583.6222 3725.0449 12817.2307 13197.8569 25480.4298 186072.8504 9320.166 5516.0536 4586.1762 6000.9197 5124.2036 33331.0472 150399896 nifh Nitrogen Nitrogen fixation NA Methanococcus vannielii SB superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus vannielii; 24792.0429 18038.3862 23514.5756 29129.9067 17714.8631 11848.9707 32125.2162 13484.1172 15674.5495 16468.0019 20553.408 9647.013 20919.16 30920.5316 21328.7102 28382.2156 15187.076 15187.076 15410.7121 26356.8108 21288.6009 491308.3138 30928.4623 36772.8518 10624.7517 16369.0545 36105.9057 10967.3215 47056.1446 20546.0842 35940.072 11409.3007 22717.2623 18989.3835 13549.9508 34575.7417 227069613 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 19173.4354 15004.6942 8834.74 13727.9614 143657.9678 49326.5642 12488.9662 16526.1353 22545.2465 254453.4815 30397.3009 54461.6939 49901.475 15883.4241 15883.4241 17538.6239 754302.6035 30058.9039 50886.0296 98755.9335 90791.7232 28923.1353 27841.8824 28114.6124 48925.1212 55133.7257 33166.6367 35692.9523 109722.0959 16681.218 16740.3055 13819.2724 29640.4064 78518495 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11590.1747 4845.2183 10643.6431 395010015 amie Organic Remediation Aromatics Other aromatics Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 15201.7677 6511.2983 33825.2257 3549.0146 6888.8798 2678.4427 8653.4839 4425.6668 3679.678 78406.2339 7180.4694 5714.7434 3259.8433 3259.8433 3671.8358 9899.9465 7509.1141 3867.7929 9680.4397 12339.3232 3272.7002 5321.8348 10197.7626 3110.8808 16961.9964 6511.4034 8486.6599 3855.6848 4094.0294 6145.58 4479.2131 5103.9181 195931875 catechol Organic Remediation Aromatics Other aromatics Gordonia hydrophobica superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 12022.1225 58856.0639 5756.9182 8717.4617 9773.3349 5347.2092 4346.2232 5958.3855 7909.4625 15734.1859 96852.4813 12667.7674 106093.6874 10527.9647 138984.8258 17607.5014 14569.175 14569.175 6095.9084 24054.2784 7228.2709 12519.8319 55446.4156 10133.6717 9728.4812 28919.1358 13624.9108 4900.5565 19605.2258 40695.1842 17594.1299 9038.6781 9376.7231 12740.2976 4287.84 12780.3716 71557669 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 160262.6437 40093.6334 209372.6232 70295.2839 70811.2333 49358.0558 70682.5337 93853.5509 38273.2374 47666.778 211041.883 77907.2897 1325754.6959 78778.4598 64881.7886 148385.4204 75431.0021 75431.0021 55752.7497 75288.8225 47236.2814 42075.8062 58012.0302 240514.2875 34324.8147 47020.887 137895.7639 34613.8747 98123.368 124292.5493 64950.1746 36080.3506 39945.4721 56842.7215 32577.9824 55076.7971 114190169 rgh Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8015.4056 11422.3102 8212.3322 9519.6091 4841.8858 5479.3797 5012.4957 3080.8844 90848.2014 5519.9519 5721.1901 2954.48 34707.0634 7605.2588 13514.66475 6455.696 4728.8074 13262.9685 5617.3827 10622.19255 11409.8947 15915.7075 10842.76095 3406.97165 4485.2945 3704.8514 7367.6156 226346800 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 105084.9388 8044.6736 3031.7326 8782.1486 5083.2079 221314.9226 6847.8698 3761.5164 6212.0751 2734.8667 2734.8667 2749.1218 6250.3548 3710.3224 6121.2137 4058.709 2285.5942 5086.0713 5927.4881 7315.7588 7603.9472 2137.5913 3311.6446 5961.5617 16310.924 284036809 cellobiase Carbon Cycling Carbon degradation Cellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 5978.8334 6477.4587 6117.7141 88770.8739 20541.2931 2164.0421 2164.0421 7413.8901 5651.0456 8129.6226 2875.7529 8260.9041 3851.3569 21344.733 6272.6908 7016.6894 4412.7112 4175.1919 6166.6235 297155581 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 138828.8734 11898.2965 286909.8797 57127.2747 174027.8161 35244.5357 89090.0952 75042.2053 50058.1998 55475.9194 131580.2845 79405.2397 1442741.3578 154476.0399 130365.9606 482906.437 111908.6909 111908.6909 58387.1595 124115.9655 77774.2055 100577.0185 125197.0223 71440.5834 49723.9119 61210.2964 77379.2429 127518.3436 150344.8295 96306.1697 159949.4137 59112.1165 64122.96 97249.8642 72701.155 89730.3676 164507582 nirk Nitrogen Denitrification NA Sinorhizobium sp. R-31759 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 4843.6604 178056.6806 7447.6732 9098.8789 14492.6062 10911.0669 6147.3893 64153.7169 12414.6519 8174.5314 4152.8885 5116.6349 5116.6349 4275.532 20287.3403 46196.5084 16512.008 2993.1939 9236.5444 9192.7381 7294.6085 20361.9046 7098.563 7566.5745 4642.4732 18030.1178 14045.0813 20660.3057 9931.1612 226284896 ara Carbon Cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 6546.7118 17708.3448 29493.0696 37153.6472 5472.8309 3644.009 9273.5723 4214.8055 15181.491 14460.9744 204036.5344 10050.5264 6673.5078 7607.0557 12464.2386 12464.2386 6876.2027 22450.3818 113868.4761 5861.3523 6726.5104 4152.6227 2779.8656 10246.2969 8117.7517 15207.8221 9750.7214 17038.2652 4851.0029 17486.8056 10643.9107 4606.695 8797.8377 292560803 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 78096.531 28140.4548 32432.3912 31015.8399 64213.7047 26357.5106 42507.3673 406307.627 19619.4588 34361.4372 25953.7253 10475297.8473 37444.5723 39926.7247 54446.5668 32018.9636 32018.9636 18359.1365 75629.5899 36953.4992 45258.7863 47845.102 73757.9773 25416.3889 21966.2922 49416.3403 32498.3597 78067.0019 64521.0438 51804.8769 20013.0404 25731.272 31572.6984 22180.7223 36362.1206 357384932 cysI Sulfur Other NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 15804.4201 8353.5715 52788.7327 97801.0964 30500.1591 13187.5855 40793.8261 7943.771 16582.1841 21982.4161 10751.0532 623251.8098 35233.8873 20066.6483 28442.649 22612.1471 22612.1471 12095.0863 32908.1483 17225.829 12766.8927 107055.7552 10136.9555 12757.6175 16783.7707 42742.564 10962.3563 39868.4027 56421.585 31437.901 21139.0236 17145.8773 23652.371 10527.1391 50019.5627 363643318 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 6639.7233 4844.534 5575.7504 4773.0905 5829.4167 8401.8857 10643.1177 7832.1575 7724.0834 3633.0456 162707.696 9822.6093 9155.4065 3744.5387 3744.5387 5190.8506 14572.9255 7704.4728 10607.2793 9480.5741 4304.4469 3247.8293 5922.5536 9088.4018 4913.492 15494.8707 5450.2379 12513.5864 4255.2088 5720.5292 7181.2854 4593.6767 10916.5472 115517947 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4439.2374 6262.4441 19201.3435 30045.4061 3503.8526 4073.4847 2283.8916 79533.0163 7523.7735 3251.4994 147327.3958 12749.7054 7283.3844 5914.1186 6811.5353 6811.5353 13543.3952 9582.3017 4455.5289 5704.4161 13686.7941 3361.2081 3338.6933 11370.8195 4000.2501 16643.053 10904.2484 12805.3768 6599.0236 5717.0624 3254.8782 5589.4507 139002641 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 28150.3468 9368.7123 3883.5251 73263.1357 529324.9032 8513.0265 6190.4822 3558.6961 5442.7792 51323.759 10236.4159 19964.5446 9577.457 8337.1207 34352.3957 34352.3957 24524.8438 24140.6117 61253.9379 6182.159 31472.9619 6196.7323 33331.0797 18242.0755 13980.1915 7174.658 23446.5921 31657.371 24004.6868 6637.0282 13259.8276 40082.5821 18621.7794 10822.7006 158107730 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38058.2667 16205.8708 14723.7468 28447.8692 9090.6726 39210.2803 31003.2962 41742.1431 19655.0203 17284.8961 15297.0682 245052.2711 21679.9116 20009.5615 26589.563 14024.9808 14024.9808 12980.0361 36897.5498 16993.1675 31895.5343 26795.7283 18698.0201 18134.3282 22172.1568 21229.3287 13742.1792 63068.6744 21204.8937 24201.0177 11196.9637 24135.1126 25289.778 10992.5544 33079.9817 145216441 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 22118.3577 245004.3338 12665.194 53377.1663 9665.0201 172613.5706 17397.6371 16117.1783 28366.1299 42386.7416 13178.4107 168315.3608 17088.7752 12951.8491 20578.0414 9373.2311 9373.2311 9464.4726 31093.4866 14593.2453 19437.5123 18887.013 12461.3801 12359.2477 10090.7532 21379.4044 11585.51 33346.6189 14040.4463 17167.2011 19338.7621 39919.902 11271.3439 50881.7871 23473.0988 283949552 nitrilase Organic Remediation Aromatics Other aromatics Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 4366.6761 4419.2984 13924.7827 6120.7686 3141.9015 3622.3258 3451.5478 72795.1455 3893.3164 5709.7901 2325.6545 2325.6545 13451.3244 8725.8272 6459.0869 5031.2703 4367.7203 9599.9407 2208.3346 2488.5113 7777.9955 2504.3948 11203.1944 3903.5191 5875.0211 9915.9498 3212.5762 3047.6444 12368.7686 15123.4248 151562937 pcag Organic Remediation Aromatics Other aromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 72939.4655 45480.4986 25571.0373 37206.6415 28122.9238 40837.6891 60438.9196 22478.1401 69362.9652 42167.347 78725.2152 626921.0247 50938.1923 95021.9285 76580.9506 55095.4883 55095.4883 39154.0405 56409.6458 42937.5756 69085.6675 101790.5835 50797.2473 73172.8436 51340.1288 104860.1943 71299.8765 116768.4451 69303.1371 139729.9819 53064.9987 54899.3002 94254.4251 39164.8013 50887.1576 148553994 pcag Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 8064.6175 5647.8589 15093.9336 15492.7974 3222.8164 9032.3526 3494.005 5812.4152 8494.0437 4830.0119 199698.4919 9091.6031 8401.6802 11511.3574 7523.3895 7523.3895 5541.4835 10486.7631 13016.9903 6801.9923 9035.1118 22999.0999 5083.0252 4849.0369 13022.9707 3415.7588 19996.2929 5162.074 12792.8028 4239.2276 7184.3135 5541.4845 7003.5522 9814.8387 33320475 dsrB Sulfur sulfite reduction NA Desulfotignum balticum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfotignum; 287819.1955 21124.6832 12434.7692 27657.4969 11761.069 55700.9123 53202.9305 14236.5351 26253.2188 431070.5657 31787.3539 1366538.1708 60309.2156 60158.7435 142296.3532 87402.8055 87402.8055 28463.9595 77039.5029 19715.7072 18464.5727 36183.3294 28271.7027 28352.188 22738.7703 25813.3651 17450.0721 74426.2448 17566.7928 55225.9522 15263.9143 22553.1228 24830.6789 13879.8055 34175.4735 239831741 phn Organic Remediation Herbicides related compound NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 27278.2824 10105.9454 8350.2281 3798.2477 4334.395 10783.8006 16982.8014 4948.3986 23045.8854 89506.0535 6014.4807 4926.4067 8682.4571 19480.9723 19480.9723 6470.1229 11348.8798 5931.5878 10624.9856 27424.1877 14560.4947 4476.4816 6349.8678 58504.4288 6032.6093 15305.0395 10202.7805 11658.3833 19689.753 6929.1516 8446.7343 3735.5383 30747.5749 13249523 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 261542.6896 52247.7895 890232.6537 626867.5438 1753843.6701 879911.3281 557138.6953 323430.076 153274.1526 150446.3075 566163.6173 404986.2358 5390507.8843 727379.2077 367492.6877 358274.0032 197057.2667 197057.2667 195280.5064 305873.7376 134300.0708 220001.4149 323367.5362 295999.606 106100.4328 139088.6986 245695.4467 143355.5949 396387.5114 218799.6429 236158.4714 147985.5183 345674.4167 348788.2535 82031.3095 341641.7909 197730187 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 42628.5367 47331.8606 16793.8186 31949.7093 12176.2757 7637.4322 11946.6479 9886.7778 20296.2614 139005.6473 43783.168 231917.5614 164316.179 128247.6385 189065.6313 19484.253 19484.253 19473.3706 38484.7256 16452.5149 12866.8225 87964.6727 12688.4448 117379.6952 18345.2982 16420.6294 55804.3002 97717.4859 24362.3926 28828.4282 6188.3537 16304.3987 18599.1547 17008.0211 7952.5042 83726398 nahf Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 87420.0105 24287.9094 36866.707 277446.007 48431.8111 26471.2848 69899.914 33026.961 31777.8286 48463.982 102513.6804 24360.8246 536304.4852 31195.1204 25725.092 33587.4591 79870.531 79870.531 41930.4012 48415.6185 34250.9166 26152.6844 140215.1818 24889.7467 91147.0401 35079.5969 19833.1798 71294.3699 74164.9391 73608.9653 82456.7416 58285.8099 39830.7717 55542.675 40208.0126 65018.3334 188533562 amyA Carbon Cycling Carbon degradation Starch Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 5249.244 13450.1485 15539.5419 21001.1374 34111.6805 14911.1146 29885.3986 11541.9745 4936988.1197 4529.8243 20808.9483 6876.4354 14596.6479 14596.6479 8055.5693 7600.1869 13421.1739 16857.5693 8516.8401 3480.2252 7693.6621 9998.6084 17224.7198 13943.4085 10274.2568 11429.3516 4320.1274 6796.7175 3714.5074 6594.6338 14372.3539 350540926 phytase Phosphorus Phytic acid hydrolysis NA Serratia sp. TN49 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 17344.5514 19379.8296 19167.0496 14735.9577 7316.8892 163730.1333 4053.0636 15450.3508 10000.3974 18736.0442 135558.8233 19156.4755 9803.9036 11128.5851 12951.4569 12951.4569 10670.1706 30564.0388 8662.5763 16032.5833 19155.6578 16523.3486 9371.8213 15932.2349 30909.795 141123.0127 37297.0813 11549.3243 15766.6591 10650.5215 13156.1034 7853.7323 15024.5271 9582.7123 388430239 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 5076.0215 7330.444 8975.8348 5756.6419 3447.6723 6142.3849 11992.7857 219795.6114 11528.8758 7665.4577 17182.5136 8580.0204 8580.0204 4556.2289 8401.2439 4676.2514 9569.2376 32657.1777 3825.7379 17926.0073 2837.7767 6244.3518 13314.8134 5885.482 4538.9264 5883.4501 3478.3353 302416101 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 4300.0583 5546.32 2899.8129 8277.6858 5553.7737 4165.9445 101492.0555 4629.3499 5146.0073 2556.0989 8834.6057 5982.0542 4530.7488 7308.4239 6079.5634 2603.3029 3585.8721 6539.0018 5147.0487 13785.2584 9200.0597 8373.1796 2855.0402 4214.0592 4104.0883 4044.8362 8377.8077 299792201 arsm Metal Homeostasis Arsenic Detoxification Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 7167.7992 5900.5283 5181.274 3981.0148 4160.2753 5726.8969 5531.236 141059.5749 4260.0453 4260.0453 8702.8367 4225.67 5137.4267 10532.1357 6481.77 2622.1783 7475.9156 2391.9837 9528.822 8874.471 7982.5922 2087.7314 4792.5437 3743.0582 2281.0868 12922.1963 150014758 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 58583.2783 23771.6466 148768.4235 30123.6938 33488.7257 131955.5933 160193.1966 69602.9822 35425.6376 74057.1262 130567.6463 102702.3853 51537.882 119430.4459 80534.5458 227774.0731 307949846 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11268.2937 12698.2235 5233.0078 3998.7964 6133.7785 9776.8048 3135.2255 106926.3506 4246.0631 12486.5739 2862.3999 2862.3999 4468.9677 10684.3355 11807.541 28118.3877 6345.8616 16884.3694 4257.6101 5786.1987 12834.773 4577.5564 18123.3194 12314.1643 13024.8229 4152.3639 6996.3678 5125.2807 6396.9579 10138.8146 3805971 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 28931.4568 58981.9606 27092.5195 30640.193 10419.7342 26379.7039 14397.7182 9894.0532 38583.5042 22668.4549 37337.1271 550826.0818 30848.4141 105032.4623 20090.2269 15083.3869 15083.3869 20993.0723 49743.2331 28622.9824 40558.1554 38420.9528 37621.369 17799.4208 15423.4551 28676.4396 17874.2906 19363.1184 12581.7928 37365.9617 15879.2308 19967.8085 19840.0897 23194.8325 44944.7671 26278932 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25864.9484 7496.8939 5217.9403 6793.7839 9981.1752 15059.5012 13847.8189 36938.4235 8633.1701 2740591.7593 14870.7898 13841.7156 6612.9398 9451.5081 9451.5081 8795.7832 24077.5219 13396.2432 26780.4636 27484.2213 7845.5212 8651.3751 7662.2636 11875.504 9828.8009 37134.3436 11249.0048 18488.6585 26959.447 8604.6047 16414.9329 9275.0442 26776.8808 162568595 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 18000.402 6258.9809 7532.2031 6428.8801 10008.7074 3257.6075 6922.7699 8730.6745 6565.3828 166041.3864 10377.79 7951.5479 9635.3061 8372.382 8372.382 5754.8237 18420.8259 10869.9961 14737.2593 10221.0546 8047.413 5189.8981 6003.5827 16647.17 23431.2587 20401.8015 10888.4984 15610.8014 4690.8952 9640.0177 7891.982 7004.1773 10899.6156 322436138 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 20868.0678 13434.7815 248486.3737 6240.0697 25484.7711 11410.0478 73198.4421 15256.1491 31316.9009 23503.6505 241475.637 17469.9424 23245.2849 21521.2948 19990.9253 19990.9253 460058.6825 32997.0587 12781.1365 28005.5432 159325.4422 88432.4459 9628.7002 17556.2559 33583.0434 73879.6626 52816.8169 21030.9801 27582.7967 12050.9503 15414.4785 23836.0554 24494.5162 20534.5282 237686912 cara Organic Remediation Aromatics Heterocyclic aromatics Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 5882.6122 86510.3984 2722.1064 3143.2374 5100.3062 3272.5537 9846.0911 4987.8168 6358.5858 6988.3958 5945.6035 5509.8414 27312.8515 4156.0076 4983.7636 2159.6762 2635.9612 4665.9387 6016.1048 366166829 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 5765.4107 4374.5071 2968.656 2896.5876 4204.004 5950.625 2637.9232 165337.8464 5772.1843 7383.7865 3251.6669 3251.6669 4331.2051 9140.3853 6311.0403 41738.7367 12117.7056 9460.3169 4358.8036 4178.4429 8012.2249 3426.0265 14165.7926 7523.8359 8772.6345 4384.8739 4915.4269 5113.3126 3312.587 10212.6754 254970198 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 30432.9977 323489.9289 59240.5773 154153.4255 7785.8106 65369.4937 11491.3817 15434.6133 32029.5698 11097.9716 213479.8587 16929.8633 13430.8688 17931.1208 16380.1069 16380.1069 13100.7581 40938.4457 15141.6739 19562.0342 103485.3686 41284.2703 12570.8511 15603.1902 11160.9398 11781.3428 36901.7614 6767.58 24202.581 11203.4522 13903.9011 14368.5526 19838.1103 23581.3927 221083729 nhh Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 8284.2122 4539.0978 9391.8295 14090.5452 6810.2788 9785.249 7479.5093 12926.5472 11067.9837 10663.596 437140.7476 8142.3223 18132.8999 10618.3876 6958.4378 6958.4378 7485.8393 18782.6125 24727.1929 11379.4655 18552.511 15949.0025 8240.3096 8724.2985 31661.9509 14619.3065 23776.5458 16138.3127 12944.3045 5811.4348 10256.7604 10257.5001 8120.7549 17244.9875 261857056 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24719.2641 12972.8885 152334.6385 15523.0557 5794.771 10903.2863 16065.6565 11239.9634 382592.4203 28047.2214 27008.5199 503294.654 23418.5329 33214.2675 43662.756 30528.1056 30528.1056 27254.3941 49271.4592 17522.8445 58811.0103 33135.4301 21819.8493 113909.8539 22560.7291 32306.8377 25595.1599 51103.1574 16410.0188 89925.894 78375.2061 30617.5265 44977.2762 13146.8976 30177.3742 379008279 tktA Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 9045.0964 9365.6286 3387.9689 4484.5372 5653.9912 2400.6344 4780.1306 4911.2559 3966.4674 4097.6973 8860.6516 5525.0001 7917.926 5245.2979 2074.6555 2846.9791 6088.8658 3708.522 9874.4433 5106.1905 8100.3301 4271.5789 3901.6948 4394.9313 1997.928 5936.6163 302418284 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5835.9095 26727.4326 5436.572 1983.2912 6551.2049 3316.1359 5471.2727 9116.6837 133837.4542 3304.0785 5892.2847 4987.4509 3535.5641 3535.5641 3468.45 5204.658 4879.4857 5201.4217 8929.0477 3540.0964 5058.3404 12295.2142 2838.5185 4474.559 3895.4655 3031.4542 578092 phenol_oxidase Carbon Cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 112521.7406 58890.7835 417028.7113 31854.5426 7533.9455 60451.8992 7496.1835 13631.4123 15175.0127 108627.7996 21031.1243 42532.1237 9233.1254 14641.9058 14641.9058 3368.3348 14820.1337 7421.4153 8594.9489 7320.5923 7127.1703 26059.1931 15650.1174 23187.7379 464516.6265 24355.471 11205.2904 6006.3024 8099.6876 10055.899 7260.4642 18964.9744 336117000 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 20954.0415 14043.59 63094.5484 55825.4762 16869.4181 33493.0837 14747.4074 6366.5892 13284.3035 31311.1202 10217.1894 317921.4948 21136.8132 23762.2821 33877.9824 16721.4932 16721.4932 19314.8835 17752.9651 17575.8 28190.694 15950.8197 27396.0691 8605.5978 11833.4902 31674.7772 8654.172 50227.384 39064.8859 35023.1554 15296.4143 14034.246 17339.038 7479.5366 22529.583 377528770 nirb Nitrogen Assimilatory N reduction NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 9238.4643 2581.5292 6157.3444 7595.1864 4588.6804 3647.1364 4660.5993 5435.2474 5957.3818 8046.7687 5976.9453 1686.6056 3027.666 3175.4613 4719.9984 7406.4484 227882417 glucoamylase Carbon Cycling Carbon degradation Starch Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 11141.234 6530.6692 6913.2731 7126.899 12840.3059 7600.7662 9253.3226 32562.9523 132621.2161 11429.6853 13547.5553 8359.7214 8213.148 8213.148 7925.866 15218.9869 8629.0301 13659.8506 10338.9288 15540.3137 9851.3646 17300.9509 11355.4593 4714.154 27767.015 57512.6309 13777.8642 9115.2892 40078.2408 32294.1688 6414.8628 14964.7966 288918408 pme Carbon Cycling Carbon degradation Pectin Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 68273.391 10866.0439 48038.1396 59423.8199 51289.2408 8683.2546 39097.3916 55228.6075 42274.9723 42155.8964 69598.8411 46029.6608 706160.8051 62701.4412 54422.7912 58248.6694 38671.2961 38671.2961 37358.1536 76708.8493 44089.1349 55268.9728 69031.0498 71195.7873 38179.3026 39666.0177 62887.5382 42845.031 117020.1549 46389.4685 72181.5462 44353.529 60881.2012 67514.9711 60919.5138 72697.8156 158519558 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 13315.5457 12639.4792 11116.4767 8383.9341 10790.4387 10939.7452 6201.464 8439.2528 13940.4036 5280.1969 219185.9122 9702.1691 15258.7169 7180.6915 5656.0218 5656.0218 9238.7364 23479.824 15953.2811 15215.1754 14235.8393 16360.3966 4577.888 6114.3131 16186.0406 6614.3948 23994.3931 12662.1053 16411.0213 6005.6778 7594.611 9444.9937 10722.1453 21771.48 110285898 poba Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 119341.8884 15524.9104 6329.6456 24370.6163 14893.661 2972.3704 37716.4644 13087.3665 9864.9815 1158872.2865 4515.7196 13932.5011 10794.2018 24844.9786 24844.9786 10439.701 137072.244 16477.4272 18631.4404 13543.0685 7619.8406 3873.7787 6534.549 14319.371 22600.4229 34355.1373 15408.929 14342.4354 5629.0729 13756.5819 18498.1167 7259.0902 18636.8714 119412251 lactase_fungi Carbon Cycling Carbon degradation Lactose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 276776.3991 12461.1357 9351.8405 4734.5093 11623.5335 6512.4289 15596.2603 9669.0614 18021810.6552 6246.3805 12415.133 7840.7191 7840.7191 3781.7603 10270.4496 10568.9567 57559.2149 8647.6956 7365.7857 27478.778 7568.696 14719.0705 7206.9397 25509.721 14007.7318 9324.0232 9375.1885 11234.5241 16792.9412 4095.528 10274.6163 254284194 SoxA Sulfur Sulfur Oxidation NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 5645.9016 5348.4244 6901.5338 12114.3152 4228.6935 2445.9427 2445.9427 2766.1837 7273.2305 4008.9397 7283.6432 8487.6974 6327.7652 2624.8265 2881.7522 14454.5536 2688.8195 8235.8988 6277.5487 3456.1036 3406.6897 6396.9332 7529.5668 8343.9683 227978056 bphF1 Organic Remediation Aromatics Polycyclic aromatics Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 13034.7811 12168.3062 10395.7074 24547.156 95338.5123 12537.4178 36943.7873 5321.138 22877.0283 14227.5725 17310.9943 329126.8346 11262.4608 31196.5814 26542.7783 25005.1061 25005.1061 9059.0341 51151.2889 11624.1406 7929.3138 13108.1516 11344.749 12037.6855 9193.3544 16563.7361 16568.8889 42999.0937 30593.0205 23676.8598 14676.5976 26300.0324 13163.5173 6747.0683 15306.8405 387938047 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 14901.4767 10027.85 5742.3265 11445.5761 6567.3519 5583.9397 4332.0837 5373.6722 5292.048 143164.4991 8948.6353 5156.2913 6436.7385 3651.7782 3651.7782 4189.8231 7053.3351 7794.8155 4635.2926 46533.8291 7883.1949 8128.6983 5588.9604 27747.4775 3389.3693 11416.3765 5493.8921 8341.0733 3103.182 4986.0131 10524.8376 4122.3288 10942.9174 381374978 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 59458.4763 178659.7029 14857.8975 16716.8857 54396.0042 13652.1526 6143.8258 33597.7496 4601.7659 9269.1567 31795.5713 28087.4713 338365.7334 15059.7522 13172.0767 22626.7268 19465.3855 19465.3855 10897.7203 18384.0865 12922.986 104909.174 17862.1448 16154.8533 12299.9338 14307.4671 19955.4096 9013.3496 39893.1187 12335.446 18221.0765 5879.1635 15491.6721 31623.2258 18499.2697 15749.4811 2707272 mnp Carbon Cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Gelatoporia; 8280.8568 9122.8243 13326.7689 11524.2275 23390.8501 2051.7911 6527.6372 9904.164 8752.5134 475951.8386 11594.221 15597.3466 10307.1062 8473.1919 8473.1919 9950.6747 9476.8729 10898.3124 8625.0884 7087.1623 7653.7151 4286.5094 7604.1534 32399.5468 6179.7439 31486.1099 18536.4949 25161.65 7457.8483 8483.9163 10782.2838 11915.0886 8630.0668 349687857 cysJ Sulfur Reduction NA Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 14690.8324 11770.3956 15231.9713 57209.0997 34479.604 22810.6773 9286.4323 2786 8905.7727 98929.2094 11954.6116 612885.4821 16132.7976 33485.961 19897.5298 15174.3304 15174.3304 44697.589 60051.1476 20465.6016 11752.8121 16926.0783 14703.0639 6075.4108 8366.6284 31679.2112 16236.7365 47229.3947 33957.3035 29412.7713 9828.4333 18425.8015 8953.0854 6879.858 15165.9002 409394940 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. Chol1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23974.7713 8713.4967 9962.7267 13080.8526 7678.7239 7255.5611 15583.7843 15484.116 9413.5177 31048.2575 27963.5983 213661.9465 15219.6124 12905.9348 16390.7373 8915.4685 8915.4685 7489.0781 19454.6753 12539.5379 19221.7153 19888.8339 12947.1298 12232.7266 10442.2573 20951.1614 9170.1124 25020.6881 18383.8604 18583.3334 14320.9454 19677.9717 7465.3236 18708.5453 20161.3971 118029372 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 26628.5173 6454.6031 21574.7454 8548.4362 11420.2966 45703.5988 6773.1915 7461.2935 19085.2856 13991.1592 98072.5156 8568.6406 14191.7421 18458.2045 25661.7834 25661.7834 5290.0046 43916.1715 15462.225 21621.1396 30523.0272 20202.3313 8706.0601 10460.4269 8989.41 40568.2898 109903.4386 11368.3228 68161.0467 10444.0553 21099.2029 12988.6467 65580.6461 16105.9125 152980548 ppx Phosphorus Polyphosphate degradation NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 14587.2887 54856.4726 5240.6779 4788.2555 2855.96 5789.1462 6320.3645 4568.5362 76397.9656 7723.6905 5519.1968 4890.3271 3310.8095 3310.8095 5924.6826 17549.5902 11347.2749 11393.7882 7658.0885 10578.975 4064.305 3340.3351 10236.7823 4024.3486 29467.3859 11728.3257 15757.3615 4350.3822 5878.7275 6761.6069 3345.4478 10755.9924 332377172 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 20200.6841 8181.2632 29417.7616 28566.7131 11836.563 14242.1722 23057.6369 14669.0653 17446.5762 21588.8726 23855.6054 358824.741 18269.0646 39231.7446 104254.4553 20519.4279 20519.4279 9966.5344 70233.2907 16221.0517 108174.9798 26774.3753 20390.9639 9308.7422 57630.539 23883.5191 17641.2381 51572.2372 28665.3859 107681.5172 14033.5152 86047.4135 37536.8574 10949.2986 29521.1273 121495548 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10343.3412 4282.2047 10515.5011 5837.3212 3042.7199 9628.8145 9969.8041 6327.9755 4747.1372 8641.734 9463.6295 7763.4128 4452.0207 4452.0207 5161.2444 15024.5895 11789.8006 6209.5217 20827.723 7239.7654 6531.2504 5307.0589 14080.9172 4470.2016 58175.7494 9902.0996 14884.5192 6371.6013 10633.4696 7054.6179 8121.2944 13581.583 167516232 hsp90_Choanoflagellida Other Phylogenetic NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 9620.9464 22617.0755 9171.424 3288.1187 3317.225 7113.4539 7962.767 5443.1362 104593.2046 7465.7785 6675.7389 4026.2461 2795.8894 2795.8894 6004.3593 11199.3498 6959.6679 7508.8668 10781.1088 4828.6225 9783.4961 4506.117 16905.6108 11132.5018 10154.7734 3766.3732 6874.2631 6064.9249 4506.9108 13088.9418 152970132 dmsa Organic Remediation Others NA Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 4287.4741 2683.0192 3528.6175 99200.1133 6488.1154 7492.6477 2445.9103 2445.9103 6052.8713 6969.245 2581.0997 2658.728 4232.9294 1931.3222 3920.6268 3121.6803 2168.283 219997419 arsc Metal Homeostasis Arsenic Detoxification Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 6127.6318 20005.8426 10204.3893 30986.4183 5071.1644 2511.814 82314.7757 7786.2262 4139.9877 320040.3206 5921.397 5358.3686 4763.4304 23846.9214 23846.9214 28735.3767 11144.6239 6254.1404 5569.4601 7148.3627 22470.2249 3897.5791 7509.8253 2730.5645 12274.1286 8322.2786 8036.0525 3055.1203 5683.8139 5080.3356 2927.0035 5412.9869 34017130 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11341.8228 4614.2998 67516.4528 31535.1133 22422.5006 7720.2151 4349.0726 152587.6607 10154.0731 8344.395 31686.7192 22920.5165 22920.5165 5228.9182 71667.9307 6475.7277 3896.2588 7676.3796 22397.9192 22903.063 5353.4577 7199.9879 26907.4856 5689.7838 6058.8399 4969.1084 2478.3625 9383.1083 146337673 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15492.4129 6601.3832 23990.9901 7307.9044 4938.9617 2547.4404 3376.9717 60445.2584 5211.6372 95548.0598 8945.1416 8955.1053 18937.5642 9441.5093 9441.5093 22199.2535 14675.6162 39629.1541 8296.3155 14346.0615 3861.7403 9674.2389 18533.7262 21061.77 5829.9194 7236.2467 3162.4942 4796.1416 4710.2274 9151.1449 14981.8719 238062409 xylanase Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 181400.3087 15703.2529 81842.8017 68515.1983 3154532.6911 32587.092 182578.0849 55719.2109 13663.9007 97924.1575 171654.3963 131997.8723 1832670.8183 166848.9739 145430.3732 138750.6233 146180.2558 146180.2558 72001.8208 213379.6108 69851.2687 32280.2509 367985.6121 31901.1738 54532.3311 76674.8622 139917.9161 89312.6018 316664.891 154231.726 123512.6149 43965.1717 62219.5009 137826.657 31642.9635 50560.0267 389931185 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 25853.1484 29044.9324 231336.2861 105279.0666 6064.9823 11507.3143 75910.4203 15952.4295 29375.8481 36181.527 46585.9335 478989.2891 33036.5429 24431.3529 13313.5579 14481.5072 14481.5072 14560.1543 38379.8506 31949.155 61849.4086 36866.1407 32476.9107 11706.2215 84629.4513 46248.6357 332508.3725 51348.3814 30870.5762 93582.9173 36184.8252 18473.2768 42233.5705 71973.1265 35651.9023 292830957 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10546.2676 15075.5904 18989.0302 5145.0094 2778.2662 5972.7055 5426.1654 38577.5893 28383.8432 22778.6068 3195318.5588 18796.0641 10631.8862 41475.9811 12035.077 12035.077 68555.5036 28522.9069 46988.5306 8981.5246 41924.5183 16600.215 30305.9278 36476.7662 22306.0917 26225.8293 33542.0162 18588.2222 33569.2314 8533.9674 16843.2801 44395.8969 59581.3697 8121.7121 162568525 aoxb Metal Homeostasis Arsenic Detoxification Aminobacter sp. 86 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 7232.5617 10059.8859 12441.3625 7665.023 5958.8223 6680.9405 7712.3494 5867.6245 4180.0735 4180.0735 9231.1246 5243.68 5826.1665 4674.8577 3717.7136 11562.6705 3065.0983 13865.0884 8685.521 8337.1776 2985.5879 5810.9675 4674.5308 5367.5431 206577388 poba Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 16988.8152 12742.2632 8439.9689 10930.6283 10853.6816 8020.3757 15032.5964 8668.8317 9130.4498 12390.8815 7580.9557 276338.2081 10404.5799 35767.8815 7503.733 5726.616 5726.616 9339.4656 16261.3431 16347.3377 11262.7695 18085.884 24285.9572 6935.3708 7209.0763 14143.1319 31847.574 25712.6021 12888.9977 17428.4061 7189.6688 11203.248 11038.427 11386.3102 21769.0437 271965911 arsc Metal Homeostasis Arsenic Detoxification Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 7416.5245 230743.7949 2447.4288 3348.9865 11970.0343 5738.3302 12931.3427 7172.2106 4589.4555 7310.3929 7310.3929 5056.2707 7622.1601 6807.6378 7986.5151 8092.5453 3460.1258 4070.5814 8600.3543 3070.0246 11217.7009 9815.9188 8254.7072 2810.2949 6272.5454 5646.6369 3068.6565 7914.7215 340359660 nira Nitrogen Assimilatory N reduction NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 66663.686 36390.3181 26489.7444 49610.9921 6662.6698 7158.7802 18104.3167 9326.8459 52514.5438 16961.2385 60401.4759 532552.7594 17800.338 106813.2832 38291.9444 36153.5707 36153.5707 26454.6249 20931.8103 10778.0011 30833.8941 16181.9532 7001.9326 8704.085 29000.3709 17213.1951 10611.6457 90722.535 16586.7373 22694.4492 16685.9053 15647.2349 47594.51 13213.4547 27670.166 226358398 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 30806.953 4822.1821 9898.1095 6555.1066 3574.4672 3639.1819 21066.3503 27077.7951 13520.5868 99529.616 5263.1305 7089.8 4989.7565 4863.9063 4863.9063 3621.1343 26006.5024 44442.4351 4889.2319 8225.6273 4129.85 5624.2061 9622.7102 3716.9144 1057966.1239 9941.3659 10533.0976 2836.8181 6629.2716 6677.7973 23824.8823 16714.5551 319927006 chitinase Carbon Cycling Carbon degradation Chitin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 12187.5014 8317.5591 3880.7991 8135.3858 6923.5056 13944.3291 11382.8625 43502.7861 6264.8944 184966.6536 15204.9134 10032.9715 8069.6992 10322.3554 10322.3554 8542.4363 15474.3424 9083.4563 13121.1393 18790.7305 11514.1135 5657.7598 5821.7629 19187.3181 6068.5129 23137.1661 13748.8143 16961.2483 6511.9461 8885.5265 8401.7129 6148.5438 19955.6672 388528372 urec Nitrogen Ammonification NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 4400.011 662884.2622 4329.8802 3848.4469 5395.0252 8658.7059 85508.569 17317.8656 5832.6049 6251.1245 9842.3896 9842.3896 4223.5555 7483.5453 30987.7828 7301.9101 5399.483 7118.7634 2362.341 23105.9644 10532.2684 10559.6952 7561.8627 11325.3252 5222.3748 3928.5288 114777120 ppx Phosphorus Polyphosphate degradation NA Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 10453.7214 4639.2878 6490.6228 7178.7141 3748.2406 20815.1946 9030.8845 6254.4987 173212.3647 16105.6298 10990.707 7513.9324 5191.8677 5191.8677 5384.467 11201.5526 13513.6945 13902.2953 8687.0798 28568.754 5876.1249 6951.5148 13428.6885 5883.1416 19147.9207 10351.2058 15059.344 9336.0254 5943.8495 8030.9216 6178.8849 12203.8143 407251919 atzd Organic Remediation Herbicides related compound NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 18273.1103 10959.0841 14392.6181 5208.3138 4407.5133 8046.0936 2738.1227 4966.5407 8715.9706 4943.6363 86298.0275 7015.6865 9051.2532 6950.2144 4337.868 4337.868 4320.5294 18980.4161 10764.2565 12046.5694 12911.8967 11516.8298 7114.6473 6752.8695 12963.2755 6465.7182 20844.9689 14132.0475 11219.5421 4792.2475 8063.2954 8528.6621 7393.9573 20728.9631 319413980 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5140.7008 4712.0048 29387.4556 13259.0195 4075.5651 3452.5318 64080.5789 3922.138 80528.6607 5094.4212 5795.4287 5795.4287 8711.2584 8197.4667 10392.3334 3433.0261 18095.6729 6552.5967 7479.4939 3040.0422 2962.9331 2353.4158 5115.3923 153962994 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 4931.9115 2254.3982 3459.3831 3812.1263 4129.7639 2797.9976 81065.7749 3741.7259 5046.3422 2586.3857 2586.3857 9706.3186 7284.0323 6030.7181 4110.3941 8010.6627 6402.2527 3232.3196 13989.5496 6585.6499 4310.2614 4852.504 237683929 xylanase Carbon Cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 6180.1716 12261.9625 31369.1027 4843.7509 5467.2174 4944.8063 4828.1847 11170.3337 12579.6943 5004.0842 157087.3277 13853.948 10135.975 10114.3175 6256.141 6256.141 10668.9408 23436.3409 10462.9058 20148.0865 16206.5766 16067.1203 7153.6315 10465.3491 36209.245 7900.4026 26601.882 11816.0716 16375.1007 4613.3804 7948.2403 11020.8198 4864.8903 16480.4702 219545192 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 57385.9911 12795.1237 45324.6139 43943.2971 38121.7728 35584.9547 42638.9062 18552.5275 32505.7344 102403.733 37143.6332 848066.7157 76097.2934 48074.3525 60931.6868 46380.8796 46380.8796 30215.6535 60116.5727 36774.8961 59412.4057 70468.9289 81856.074 53595.5284 19539.0079 43277.913 27486.4595 119339.6813 50363.207 58041.7388 23977.6852 31237.638 32780.7778 27537.1558 54952.5097 118033149 rubisco Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9449.4764 5413.8157 6870.2915 24699.8931 7377.3246 5780.2575 2666.9808 7831.7705 13811.1145 11869.6455 85850.9265 5597.2587 22700.0853 26047.0914 5426.1113 5426.1113 11575.8702 21145.6804 7474.3729 13523.6411 11270.7758 9068.6282 9347.6953 8498.117 14690.3637 6358.7929 31145.1752 12672.6009 16740.5504 4615.4002 12956.4611 9549.9762 5113.7739 9435.0934 147886176 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 14057.1512 6507.8105 13635.3387 8278.0338 2694.7415 7806.2066 8603.453 8740.4098 6808.0708 5052.607 218909.1041 13884.5591 759018.4509 8904.7763 18815.0678 18815.0678 23748.9319 29799.5665 30670.2947 6770.6487 59427.4492 5225.2404 2757.1541 13737.6869 27523.9879 12317.3654 15913.5003 17299.9525 22499.483 7802.53 10172.7338 12713.3553 4400.8298 6585.4077 319413891 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 18963.6875 21095.3384 16492.2039 18816.1671 10394.6323 3438.0891 11001.5537 7726.4899 9828.6238 18843.3953 23846.5628 332988.5227 7350.5118 18121.6742 33002.8838 17802.186 17802.186 8835.8246 22341.2956 23977.8573 11934.4563 23806.2499 10051.2836 15708.0239 32310.984 17818.513 12770.5449 53309.1885 27774.573 25349.0342 5603.6163 27504.7016 19978.6377 14544.884 12531.7832 289172481 amyA Carbon Cycling Carbon degradation Starch Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 3823.124 14801.0003 2723.5124 74359.4851 2431.0247 2431.0247 6020.0912 5433.7056 2828.0988 3032.0523 2303.3918 2514.1336 2852.679 10005.1641 373854422 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5821.1444 4168.9981 7146.848 7146.848 3063.7335 2037.1195 345878199 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4848.5438 12276.1083 74174.3233 3874.1617 5245.1792 7058.8009 78337.8337 4447.3962 7018.168 16105.3719 7443.1176 7443.1176 3441.0637 12094.8187 4357.9875 19602.3558 4884.9127 5604.1716 6764.5253 2627.3903 16557.309 10075.3357 8799.5266 3359.8149 4061.3413 4929.5201 374922769 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4681.6305 3152.2262 3996.3851 4665.0885 5230.6976 6480.5006 12228.8349 2956.5317 4633.7728 27349176 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8010.7948 5166.0471 4506.0868 6366.8169 25582.29385 13234.4878 6916.1162 160729.21 20542.3601 5943.5176 16922.64125 18004.6449 7583.076 11156.74615 19998.0042 18481.8488 6806.89785 48687.5633 7263.5146 12739.27295 6243.6866 10859.6819 345808640 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24547.3541 28264.1997 17676.2014 47103.4637 15915.7541 14832.1282 12706.4587 80987.5549 12822.8627 34737.1256 36135.44 573737.9484 26610.9871 24319.2194 50855.3961 64831.5888 64831.5888 18187.3556 51631.2774 25041.0075 16642.8523 50547.9814 27477.3528 10297.9102 24587.4906 61042.6758 42979.7312 54899.0747 28975.5492 33560.6904 14811.4416 27980.7938 28763.2929 19267.3427 24999.4696 55977222 alkb Organic Remediation Other Hydrocarbons NA Dietzia sp. K44 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia; 5135.1644 2423.1022 2610.599 2610.599 5907.5523 7661.3063 3755.064 157373827 nrfa Nitrogen Dissimilatory N reduction NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 4535.9047 9623.9625 6937.9023 4015.2811 6998.1151 409400363 poba Organic Remediation Aromatics Aromatic carboxylic acid Acidocella sp. MX-AZ02 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 7820.4401 9555.5889 6327.7986 9210.2681 5365.0197 4225.0539 59120.2924 10657.6825 6018.84 420852.3464 10912.4777 11674.6521 70602.0912 6025.9552 6025.9552 9905.5383 61585.1084 6380.2201 10703.6116 7741.2669 4877.6429 7663.0702 16407.2297 14258.5884 5176.7192 26600.3477 9916.4604 11715.373 2298.3973 10435.2906 16069.6625 3715.4548 25163.4806 116622105 ara Carbon Cycling Carbon degradation Hemicellulose Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6867.0804 7579.4964 2871.038 5125.5992 13919.9466 3260.359 80959.7871 22476.9875 7628.3361 5148.7427 13766.4803 13766.4803 3414.443 12713.2188 26293.2035 135104.3968 10718.7408 7260.7274 4292.8887 4804.4472 20653.3987 3645.8347 12260.309 9164.7604 10339.3017 2497.4939 5365.4869 12111.8327 3612.4434 13124.3295 357014030 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 18931.6417 12860.5094 12553.1312 6535.6748 11104.5872 11578.4422 38732.7752 3738.6369 9864.9947 34068.4844 17197.0203 134078.2127 19789.6757 13693.0778 20972.0899 22014.9593 22014.9593 20945.3291 25067.4342 12409.5709 45301.9754 20403.9004 5353.362 5899.0352 13409.6679 24109.1618 54440.0539 25342.7606 20060.2766 37151.8824 8150.7792 9811.4982 13777.6847 8976.6348 10428.7034 119402011 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8395.0258 8825.1054 1435973.4684 21432.795 6062.7525 8129.3692 4016.5935 5856.3482 9169.0932 2823.8332 138606.2404 9641.2755 4199.6738 6896.788 2439.732 2439.732 3481.8728 10671.9475 10870.3844 5887.8944 8508.9702 12625.0723 3172.5196 5202.4546 10150.058 6095.0766 21505.5585 13502.4483 11302.7952 11904.9405 6101.2346 5800.4509 5640.9399 14653.6545 41407942 mer Metal Homeostasis Mercury Detoxification Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 3966.3225 3711.5993 4867.2577 2638.5555 2239.496 295411204 catechol_b Organic Remediation Aromatics Other aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 115378.6095 9232.3933 22790.6524 18440.736 9015.0029 12597.4678 17059.3273 10714.5085 15769.3235 20353.7564 8957.3938 627051.6458 27036.0256 15944.7036 16601.3187 9643.5863 9643.5863 10822.3054 25813.1602 19536.2415 20537.2929 20404.3723 18821.9117 9524.0567 9069.7919 22154.1793 7018.8801 36756.2982 15637.344 22637.0114 8356.6072 14821.5755 11085.7643 8325.6412 19264.3102 219862718 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4742.1682 5495.8318 4196.3396 3808.6455 35075.5584 2985.2118 158524010 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 33448.4038 13742.2964 31127.0834 15458.8178 579760.4145 94089.6787 79548.6531 16519.0229 13571.0419 21774.8082 17143.5144 314567.3727 19775.206 17358.8334 17098.0942 10698.0366 10698.0366 10471.5268 77883.3438 15857.889 24295.1379 23164.9444 35466.1668 12942.014 8882.4907 26701.3395 24129.9362 68925.4715 10759.8636 28444.3183 15341.6848 14185.8484 17320.0291 13186.5463 29497.4835 77463896 norb Nitrogen Denitrification NA Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 109486.023 72038.4497 59328.0443 92858.6738 167283.5141 22541.6002 21438.8417 114364.318 58282.5973 136815.8724 157416.3642 113837.8572 3094112.4435 75770.3133 97363.0309 235906.4334 138561.0167 138561.0167 77559.937 149996.0276 51061.7851 100149.9683 272321.1806 132300.5906 185425.694 59336.6966 188928.334 64638.237 136206.2532 237814.1167 160871.8835 62262.3104 118149.4868 123011.1634 59027.2114 152591.0896 226364828 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 82592.4812 43147.2819 17702.2068 23513.9544 8921.3914 7295.4582 20684.4893 12557.3742 14381.8909 29519.499 21015.7894 391642.3484 16592.4006 24317.4378 25140.3898 15597.5002 15597.5002 12874.8513 38938.6275 19701.8159 26832.1341 53403.8992 26626.2787 16224.6869 16824.4605 28966.4449 16955.274 42372.169 35116.8237 31269.2894 11066.0433 15381.9694 19149.771 26853.0464 31464.8772 164456208 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5692.4417 6158.6496 13102.7057 13119.1106 2806.8458 2690.2462 3647.9305 82462.9196 5099.413 4751.3634 7900.611 5275.3084 5275.3084 4739.272 3889.4696 3992.0548 2684.7583 13783.8901 2392.2894 11407.5679 8491.2988 8556.0931 3501.4061 3622.2909 5030.8625 254295324 tktA Carbon Cycling Carbon fixation Calvin cycle Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 12637.8592 6655.6832 9352.2363 10358.6917 8066.3891 5299.2797 5597.437 10156.8458 13967.7308 5541.9649 162899.4892 11174.4496 8390.69 11590.05 4227.7187 4227.7187 4988.9169 14991.8274 9711.2412 10396.306 10785.8779 47422.2584 5997.8934 4880.5281 12549.9811 5596.3208 23998.0984 5193.3133 13241.0755 7899.6503 7643.9111 8588.4092 7561.8732 16386.2011 326405278 cysI Sulfur Other NA Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 4037.6853 1788.5161 3432.8313 5272.4505 5865.2376 3208.8299 173224.7759 4900.1305 31756.8988 3233.1991 3233.1991 3575.299 11116.3101 26493.1898 6473.8022 6818.5493 5322.2708 3723.9715 2799.1153 6936.0689 5054.1484 13807.6412 7654.9425 7512.521 5948.8807 6373.8121 5398.0669 4952.6535 9727.1939 260217046 pme Carbon Cycling Carbon degradation Pectin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7045.5629 10609.5199 4143.1187 2247.0277 4891.3151 12692.863 16506.914 2482.646 2482.646 14819.4327 10670.3988 7278.1694 20803.1649 68748.5494 10116.8212 6013.1271 13742.9538 7940.836 302196834 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 38134.6252 24349.445 43526.215 19666.0359 8652.4614 41054.4382 12297.4529 253850.0382 21155.3749 23939.0104 13141.1948 637959.9424 45948.6457 34803.1713 24139.8763 13472.8526 13472.8526 19609.811 37911.7475 21479.2846 61853.1934 33956.5204 56325.8703 21485.3189 15179.8495 30327.9813 13580.4826 51295.5868 12271.2762 32672.5089 13971.9491 32910.4959 19466.5334 14430.6728 38738.0481 422314475 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12739.2038 85000.5154 6075.7763 2712.5797 4578.4932 5266.3512 10320.2411 135512.4773 5577.7182 5893.1713 2957.8208 2957.8208 10462.8462 15532.0705 5082.55 4265.7354 8280.1683 8827.5301 5821.825 4340.644 14469.0604 4029.4351 22814.3742 4995.5166 9491.4088 11208.3011 7604.2459 5756.9441 3829.6818 5752.2234 405376355 pcpe Organic Remediation Herbicides related compound NA Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 18911.2652 11230.1561 13829.1168 19337.6236 12906.1462 27457.5781 9109.0894 16949.812 20547.7443 16920.0499 357993.0768 21882.0545 27754.5803 13035.8095 11297.4889 11297.4889 27910.8866 28132.1702 19037.7267 14420.9479 32042.8272 66861.7609 15331.8493 10707.1847 24448.2943 10899.4988 41083.5375 20524.8593 28230.6343 16911.8702 20828.0736 28171.4738 14245.4956 39350.2593 15077499 dsrB Sulfur sulfite reduction NA Desulfoarculus baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 16488.4967 30545.1508 13656.2284 9657.8578 15969.3755 24849.658 28994.2273 34451.312 9473.7395 17265.6865 12864.6896 247058.4253 25348.0103 21403.188 18287.1796 15041.0908 15041.0908 11663.7228 31006.2959 14368.1189 13695.8742 29822.917 12034.1284 13882.8738 15317.5333 12357.2201 13246.7805 35455.3634 11934.1867 19422.9502 16307.5199 14357.9312 31326.0733 28251.7275 14743.6043 187924677 ben_bcla virulence NA NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 59295.8359 20870.8506 15222.249 22328.9491 11009.9513 196516.638 13526.9423 107674.8553 32657.0465 100257.9667 396832.7594 38604.4721 39705.8631 31490.6226 13854.7923 13854.7923 32052.3378 27338.6764 22600.8891 23212.7913 43948.0748 20028.5957 54146.8672 22207.857 34437.8152 160241.829 54550.3497 195931.6331 44367.7851 15955.4999 64126.024 27977.8872 23257.2598 27399.4072 297555423 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 9947.9272 3145.1246 2730.1304 5063.2695 6101.0079 6762.1424 6583.6865 133333.7445 12132.311 4832.1174 5555.1293 3935.219 3935.219 6309.4187 12446.9584 5867.254 6203.6528 20549.251 4080.0126 3972.292 4604.6635 22723.35 6521.1228 20829.8492 10905.0969 10302.8867 4094.9794 6760.4536 7559.864 3310.9553 7316.5593 333900391 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 5348.9795 5626.5913 7887.0314 9442.7461 12253.5774 6213.0565 3542.1966 176429.1628 4917.725 4132.7847 4948.0404 2441.5027 2441.5027 6088.2858 14073.7688 5449.0047 3844.567 4168.5814 21366.1471 4417.7167 14498.7037 5086.6286 10670.5988 3506.1727 5662.0577 5792.4789 2856.4511 6871.1394 377832665 badh Organic Remediation Aromatics Other aromatics Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 30143.2312 32726.7088 32089.8507 12603.8818 19207.0415 10454.9135 22893.586 18302.6089 31305.5196 25841.0962 52553.6151 24887.9944 586194.9153 31239.8142 36002.9962 31062.572 22333.7665 22333.7665 15790.9632 34408.1233 32813.5689 28559.268 36430.2723 67417.9703 63947.0121 33947.271 48537.9683 70602.2504 55905.9508 156518.9353 39091.9708 23902.4974 57543.6659 34346.1313 17342.7184 119307.4901 326946191 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 7631.7082 4552.0173 7046.7311 4367.9952 2920.4465 8250.4163 7879.795 3515.0085 163382.3288 10582.5167 5798.9214 4439.8252 2912.3702 2912.3702 6020.0359 13098.2042 8437.2885 55214.8979 14660.4798 12691.8801 4687.7347 4370.6057 10885.6726 3182.7982 16719.4713 3736.529 10357.9595 4459.4296 5691.533 5851.6214 4299.4664 11712.2381 359316171 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 5113.8681 6253.2456 3733.0609 5616.2773 7245.7564 6132.643 6800.8656 6370.8215 91834.8407 14248.5443 24447.5075 5856.0004 20938.6187 20938.6187 6232.9946 22961.0064 7576.1352 14644.1419 10045.6108 5962.4702 24124.4937 8899.641 13141.2124 7582.5474 21961.5405 32144.0674 18373.2832 4987.776 15252.5921 7192.042 8976.1815 10021.3808 347530998 cda Carbon Cycling Carbon degradation Starch Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 8492.6677 5891.9247 3269.4521 2686.505 5732.9549 6481.422 80200.6736 5262.8552 6993.6949 2058.6351 2058.6351 4798.5755 12025.4931 6182.5068 6151.2626 10169.933 7832.6039 3844.4383 3909.9804 11851.0402 2988.3477 12072.5854 6935.4202 7386.2474 3629.7667 5034.1622 5856.9541 3405.0521 10753.5532 34017186 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 15861.4753 6233.752 5358.408 3777.494 18460.0725 2046.1218 10692.0974 12189.4038 4318.5301 180121.4607 13683.713 9940.9516 5236.5762 14703.527 14703.527 34671.95 16760.3696 11602.914 7775.6329 12727.359 10920.911 5502.3435 10583.0223 16078.8269 30190.2903 23346.9252 17939.5461 21919.1405 4242.5425 7371.7392 11336.4805 7742.9964 12913.9625 372274734 amyA Carbon Cycling Carbon degradation Starch Pantoea sp. SL1_M5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 16531.1168 4826.824 53024.2176 67503.8713 9286.9791 10375.8397 76167.3589 3537.8605 8350.3825 20407.9399 7780.4567 245769.7377 13462.4503 13471.6776 16838.8498 12792.0808 12792.0808 9134.9978 24067.7441 23320.9434 12729.5258 17241.4544 22510.5967 12075.2524 10072.0917 52418.7224 70813.6307 38791.8294 60802.2503 21481.3264 10646.6145 11183.8862 117748.2478 12066.4597 36418.3023 94471259 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11572.5662 16282.1358 8951.4254 30000.21 6113.368 13981.894 24223.978 26132.9215 19364.8404 890539.5218 9079.8311 145810.0383 13460.1401 10438.4847 10438.4847 4576.0017 23019.796 15040.332 16978.8231 18079.6771 13794.505 4534.3189 16987.5177 15524.7252 17653.3913 23491.975 15651.516 17725.8026 13669.1061 11223.8176 34705.5384 17227.4303 16377.3075 324970421 nitro Organic Remediation Others NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 27974.3026 11920.1297 20046.4259 39980.07 7423.1982 53409.8458 22512.4772 14517.4108 26159.0899 31501.9088 23370.278 715969.6079 24875.6235 23264.8822 26035.9396 15882.3471 15882.3471 22585.3412 38196.6606 23676.421 36252.2694 37431.5184 32681.2239 12466.0365 18866.0054 37172.8522 12366.4856 59017.3718 27222.0771 32988.7504 26896.2637 31440.0511 20518.6224 11439.801 36586.0417 224027963 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 150467.9568 31985.1916 216024.0787 57206.8322 81852.2265 31814.6942 97215.4576 159261.3539 109528.4776 366404.7971 103702.0735 125238.4398 2605898.3782 118506.4144 209753.6886 425892.2561 138580.3839 138580.3839 77340.303 169007.113 121199.447 239261.7473 419567.0196 98542.6332 64088.6899 90833.5734 150640.4696 111111.8243 302610.0606 173301.1155 154711.6631 61794.7315 92611.5716 210965.6883 85395.6554 205165.8302 242814606 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6442.6356 11185.5099 4226.0205 7299.0564 168528.5538 6773.3819 8273.6166 3287.7791 90732.181 4426.723 5896.3227 5043.8473 4691.813 4691.813 4614.944 18930.8929 7324.3229 10715.133 23367.9548 23884.2717 7907.3357 3984.8836 5193.9262 10046.4961 29243.0395 4539.1999 7826.1296 2868.4493 4385.4525 16057.67 5154.1648 37127.682 78093578 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5339.6457 4272.4632 64749.151 14530.9496 6342.4933 4670.9353 4508.8687 2069.5977 4246.2522 2940.0826 206566527 arsc Metal Homeostasis Arsenic Detoxification Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9924.5708 4049.1677 16249.2987 3890.9042 4616.979 9276.6712 12049.7294 4110.9049 7367.0336 7367.0336 4680.9783 7067.8841 4475.2948 29626.1317 2556.2338 4925.7379 1961.5017 18341.2975 5671.4787 4670.7191 4104.8672 4671.805 5265.9991 26448.3611 42391.4363 154362228 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 7940.274 6343.8888 2578.0121 33968.7083 2299.655 4385.4906 4754.3899 3244.8672 114742.4059 5915.5164 3568.6255 2907.893 2907.893 4053.6834 7690.1535 7060.5827 10040.8955 104824.4791 3189.9704 3086.3966 9752.6363 20233.0299 11771.6921 22209.1858 7755.0176 3874.5665 4158.9719 40127.7593 3822.7157 6069.6888 149202445 ppx Phosphorus Polyphosphate degradation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 12732.7192 15008.9658 40558.4387 8421.8274 23255.23 20434.3485 6404.8267 5118.4875 7205.1934 13420.9902 20926.8556 6579.2457 6579.2457 4317.6022 14039.427 4192.248 4340.4492 7419.5123 2233.2423 6881.9978 7485.0944 18016.3976 24422.2883 3990.0026 10927.673 7690.5365 14608.1222 38433.0087 55809.7776 12285.3957 345863416 mer Metal Homeostasis Mercury Detoxification endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 59059.4847 410273.2039 64960.6302 62973.0163 30400.1467 5669.3534 61531.319 149585.3608 41193.3185 64053.1789 74866.2434 45282.0308 668346.6833 99478.685 67921.8905 201680.7914 49591.4925 49591.4925 29511.2658 99693.039 30208.3502 55445.5031 94823.9604 59692.0609 49497.3638 51215.6965 53918.2817 47094.5241 101707.0268 62494.3249 77664.8995 52454.6158 116100.9104 45583.3044 86615.8856 79023.8596 220725571 badh Organic Remediation Aromatics Other aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 27987.7605 96877.1557 16270.2966 51882.6603 39210.1564 27327.5182 42737.0601 14396.9388 38507.8342 111133.7239 108185.227 466854.6892 42077.7295 60373.693 42452.5871 42984.7459 42984.7459 17989.546 68427.7094 24439.8556 25282.2009 99406.6016 12022.4823 24284.2459 25643.9786 47236.1989 42753.5922 44107.5818 47134.4915 52040.8162 25049.4095 30355.7103 43217.8587 10466.3085 43362.9325 160945094 ppk Phosphorus Polyphosphate synthesis NA Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 10600.0037 7369.9522 8457.2788 5223.8468 150536.9994 3902.9986 6510.4883 7326.461 7472.1812 198085.1207 14585.4237 10614.3862 9780.3998 15094.0895 15094.0895 143050.4673 11904.6754 15325.0535 451049.3983 13939.6279 84213.4244 8185.9992 12537.0815 28423.301 5215.0202 26926.267 16261.7793 16506.0381 7032.7509 5091.7592 7371.7195 7447.7925 14641.3235 192897572 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 7397.6794 10601.1497 10151.7126 10378.4055 3977.0526 2357.8975 4923.7914 4438.0848 2721.0873 2721.0873 3734.3673 2586.5786 6894.2607 28190.7935 4095.7419 6831.9674 3428.884 187921270 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 31794.596 7017.6174 6053.2105 9608.176 14804.5531 7126.9616 9972.2272 7652.002 11185.611 17104.022 21276.2559 194597.8853 12926.0148 14971.892 9321.8972 38023.1291 38023.1291 7628.965 30608.8138 12733.6577 20936.2074 41408.363 39283.5314 12683.0463 8252.3001 12283.8169 15676.3559 31230.1108 17989.7025 20385.777 5891.8192 30175.2526 25120.204 6134.632 30758.0378 384080545 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 236026.2385 33777.0681 124542.4487 17049.8266 19081.7165 35952.6782 34498.1431 42230.5279 38552.022 42262.2627 808700.6245 33005.9419 41850.7601 36404.5893 145370.0247 145370.0247 66188.0809 103824.9913 73732.4157 101541.5786 142793.3249 83882.4041 80702.2655 57541.2508 103625.8228 85084.5766 93176.3666 65042.5584 90253.363 28681.8425 80157.8294 62967.5513 49184.794 54210.0639 161382408 mer Metal Homeostasis Mercury Detoxification Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 65968.7048 23166.9342 44058.3342 67312.7831 58650.1651 27416.357 71375.5346 69301.5705 46400.5769 104565.6914 94196.6142 89207.652 853046.1203 125451.4963 58605.559 119880.8188 75820.5064 75820.5064 56933.9439 79331.0361 73658.5189 55251.6997 89490.7324 59167.2864 28904.9879 39942.2796 64278.1544 52813.8395 104901.4335 102538.1688 92188.2656 39637.4699 57311.2256 67179.2083 44443.9683 128021.5506 380733754 pchcf Organic Remediation Aromatics BTEX and related aromatics Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 16178.4565 5209.8744 11342.4464 61313.3635 14694.6016 14218.9588 8294.1391 4786.9813 16003.3998 12788.5522 14586.5404 269960.6896 12740.2439 15381.5009 26941.1816 16511.3055 16511.3055 12939.1118 24921.8149 11622.8002 16061.0699 77723.937 35213.4288 16097.2559 56250.8098 24949.6012 11320.763 49842.897 16070.0598 32094.7681 7041.0413 11824.408 9287.5389 12194.7355 19410.1444 283799601 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 37391.207 22938.3992 40172.7198 26358.5382 37530.9058 30073.4163 96678.6018 19159.731 31722.7862 32883.3523 26116.9213 593200.018 34477.4482 36061.2922 24429.0517 24793.4583 24793.4583 25444.0789 44034.7523 34681.9289 49104.3515 47819.8311 51545.1427 28370.707 19174.578 43756.0996 20209.0428 114945.3791 23403.8241 42751.3757 21288.439 28887.9823 30008.5987 35308.4526 48979.9394 90104153 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 187494.0241 15667.8667 27284.487 57077.2223 62759.6427 20064.8485 136279.627 118142.8454 40366.7211 52893.1756 77351.5398 41459.589 2149132.3452 57650.1624 51861.4711 41391.7172 38433.718 38433.718 29328.1247 54461.2185 40500.9454 81035.4548 129678.6859 63658.4819 36869.4844 54398.8567 79570.5615 85013.4633 113987.8318 446486.3645 90357.7581 177642.0563 33556.5707 63952.7189 37895.3376 259705.9274 283439393 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9576.3671 6130.1908 10047.9073 222087.1635 4816.2263 3252.2968 4858.6019 7367.292 64603.6664 12193.0402 10281.0302 13032.9801 13032.9801 21707.7781 16004.2618 4610.6144 6466.4498 6136.3693 4561.6796 2647.7797 10993.2402 8920.4139 15718.8078 13068.6317 9471.4176 3802.3143 8865.9852 6781.292 5224.4654 11316.7766 108801912 linb Organic Remediation Pesticides related compound NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 29341.1339 12482.2424 28176.8783 27020.8135 16604.6466 5302.5987 18651.716 20752.0402 21798.5332 28776.1706 33241.02 15739.0739 813692.1217 41062.9705 32596.0725 26907.3142 21536.4732 21536.4732 20959.4565 34965.1973 30352.7502 35430.3918 49967.6656 43802.3462 19193.0618 22423.075 33523.9767 14495.4999 121515.8601 12770.9699 34266.2301 18022.3892 18535.39 19442.887 14162.708 38669.1364 139003267 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4818.7278 113794.7952 7304.0649 7510.4063 13202.4857 21847.2591 7375.6732 9377.2818 12752.6993 198249413 tehb Metal Homeostasis Tellurium Detoxification Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 45145.4257 14162.5346 21406.8434 69752.6812 5481.1918 34741.0693 37732.7726 11133.799 55480.5395 55023.8818 44611.934 379399.1396 19116.4949 56958.198 213059.8387 36608.6635 36608.6635 12455.6261 68197.2948 43533.9345 233610.7043 16016.19 15979.0844 15299.1251 29643.9113 23781.6953 55363.2022 62519.9205 26450.6166 25719.4068 16063.0176 22964.8651 120082.0206 17161.9244 14798.7523 171682268 pme_Cdeg Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 5412.7868 6291.7534 2728.8928 3674.9894 5374.5641 5621.3896 2793.1675 156813.5308 6274.1615 4040.5569 2564.8668 2564.8668 4448.562 7966.8529 5247.6582 8130.4055 8205.348 4617.4822 3950.0862 3960.0512 8331.9272 3789.6844 13266.2784 5562.3368 8640.6222 2917.5245 3852.2458 6032.2545 3422.3146 8987.788 387847234 b_lactamase Virulence Antibiotic resistance Degradation Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 47246.9686 14033.0601 35552.8656 5185.1547 396575.2183 4922.7313 14163.5943 8543.1923 7214.8876 7122.611 5504.8822 60302.781 8283.9608 4833.1629 17544.1019 3752.3337 3752.3337 3233.7702 13127.7319 4700.7188 4951.2329 7109.3546 36493.0285 3781.8874 6629.2805 13405.7199 2404.8547 32561.8593 24388.1653 9466.3266 4530.8771 6143.9408 28704.8796 10484.3964 383337711 ppx Phosphorus Polyphosphate degradation NA Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 4960.1246 10852.0597 8156.7861 5151.1411 4936.8633 5405.2631 4473.9064 3979.8003 10335.2008 10235.1182 3611.6674 4636.0723 3508.5513 3508.5513 3189.114 11061.775 5860.7453 5840.1022 14617.6316 7718.5749 3994.5943 4859.1358 7665.7176 7233.4034 22011.9953 11285.7055 3563.3668 6589.9549 5921.2488 3817.3293 8771.9498 313199944 ppx Phosphorus Polyphosphate degradation NA Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 73598.2328 27929.8784 31444.5596 99785.936 16278.9674 6434.9026 156097.6731 13710.0651 10771.0613 21294.005 19909.98 41874.07 352172.4716 16155.6407 29221.77 33401.6826 41911.73 41911.73 168042.3587 28668.8889 27564.8616 72830.0687 19684.9588 17818.5572 11886.2976 13936.6813 19612.4839 42397.0985 20692.1577 23489.8214 22359.3362 23247.8643 15787.8125 41744.4272 13308.2064 32603.551 354960072 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 16494.6685 6171.4864 5018.5681 4891.0325 5406.9985 9241.5569 91203.5343 13718.5044 5059.1582 5125.243 3818.3159 3818.3159 4366.3373 6002.7808 4109.5536 7243.921 5448.0181 3540.8287 12003.903 10043.2215 8203.1871 2513.5647 5799.3881 5556.6549 5316.6693 6441.9864 29607183 ppx Phosphorus Polyphosphate degradation NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 446135.866 70659.3339 576399.8379 92905.8954 101553.1044 88486.1576 45412.8996 88957.0545 42759.2655 165736.3706 152918.2076 132882.1276 2559724.3166 195596.619 148617.5611 456781.8289 181779.5633 181779.5633 68524.7017 75610.1974 82992.8957 79979.8197 97832.2623 74151.5662 45917.7508 74366.2723 148666.6742 70724.4792 145619.9879 79693.0406 95957.3741 33544.8567 82497.271 60256.7038 48330.2 152382.5598 338800277 gdh Nitrogen Ammonification NA Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 6917.781 10025.1243 13369.2032 8630.0778 5724.8593 6301.8311 2017.0957 5411.2968 6680.2852 4780.5243 189396.1124 12303.4056 11311.7401 11213.4399 7441.9264 7441.9264 4050.1198 10577.9259 8640.2939 5020.9163 7325.3711 9931.8707 6034.7181 5150.4557 20165.9721 5031.4579 17422.7306 11117.0307 14651.8456 4227.1611 8024.6764 4435.812 3289.228 8721.9342 334731878 tktA Carbon Cycling Carbon fixation Calvin cycle Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 6987.6531 4488.0623 15718.5584 5482.1567 2988.914 4106.7243 11499.4761 5768.8359 16430.7963 21861.3392 110178.4231 29940.327 5334.9237 7031.8751 7808.4519 7808.4519 3475.5257 16663.2643 8567.2338 8804.07 5932.727 6775.126 4468.8945 5126.8146 11108.9057 4593.2156 13101.0857 10211.8765 12002.8177 4853.5745 68338.4183 4343.6601 4371.3801 9530.8032 34148180 dsra Sulfur sulfite reduction NA Desulfotomaculum ruminis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 4268.9939 5879.9649 7499.7542 2160.7869 3122.3837 5311.0728 10782.6207 78626.1275 8542.4858 2901.2775 5826.9355 3867.7514 2175.2688 5787.1632 2087.2056 8475.3251 5281.2075 2558.5121 2581.3904 3931.8487 2828.6703 372280857 catechol_b Organic Remediation Aromatics Other aromatics Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 10988.5843 7849.9345 21466.3115 7127.6076 8776.4095 2599.9902 4206.4756 28306.8963 15716.4232 82054.2987 45974.8816 16148.6409 4072.2035 15040.2137 15040.2137 4067.6639 15917.8751 12062.989 20561.0554 25966.9066 16368.6855 12011.7501 11917.5112 7725.4924 6641.0878 24151.7962 14766.6395 9634.1434 10065.4878 16027.4477 12804.2428 11654.9546 8272.1494 323366208 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4160.235 6468.4246 3300.4275 3390.8941 2526.3455 3276.1816 3636.3586 84768.089 5233.2319 5062.3672 4671.5999 3976.4303 3976.4303 6484.8138 3729.9487 6171.4734 5493.6052 5813.6427 2892.0192 6908.3194 2655.0136 7072.2897 5191.7512 9142.718 2646.8362 3696.7525 4026.1867 2666.9477 8297.3695 206586502 aps_apra Sulfur adenylylsulfate reductase NA Olavius ilvae Delta 1 endosymbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 18986.181 12679.8014 3901.3242 6158.4155 46355.0035 4881.2983 5681.5998 5832.9156 2291.5276 2291.5276 12746.044 4235.1022 4261.5179 4916.174 2373.0528 5255.1588 6590.0207 4841.4597 11461.9145 6895.6931 7832.0942 5864.7432 4492.8478 5492.7631 4590.6034 14792.2938 73763060 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23231.284 16528.5673 13277.2872 12899.8758 9936.8937 4869.9941 13764.8325 12213.2784 5993.0359 11531.4176 20896.2216 15721.745 654554.844 11620.2748 12472.9179 10241.8693 8381.0948 8381.0948 8434.9132 23902.5841 14518.7505 18045.7871 18088.1528 14816.5745 9198.7319 11460.0203 20280.4148 8420.9184 30713.9128 19497.6146 33901.0713 5343.4351 12066.5844 10362.4936 8031.4741 30072.5632 84498490 arsc Metal Homeostasis Arsenic Detoxification Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 11264.867 22290.1361 13496.8 4768.5978 4110.8092 5845.849 8640.5741 5201.9189 5089.1232 4222.1023 336850.0803 8587.5195 7645.3029 5665.1075 4593.2322 4593.2322 3073.7103 11297.7351 8557.8656 5767.1567 8255.7426 6147.9687 2519.6794 5071.3096 11109.7165 10864.32 28522.7215 10344.5398 33420.7074 6856.8458 6745.3631 5531.0128 12432.1621 7256.056 2960348 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 48973.9009 7506.7399 8792.0095 8521.688 5071.3468 3270.9167 7202.0688 7630.7116 87808.0006 5214.849 5421.4034 3994.2214 3347.0497 3347.0497 5113.5561 7631.4651 4578.2035 7823.5658 6632.4511 8687.5023 2191.8706 2696.4076 9162.794 3132.4595 16343.799 7228.8017 9278.1847 4094.3573 3929.3869 3950.8743 5035.8702 588743.3448 134100570 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 145096.8272 36978.8063 45307.1116 113549.49 30494.7844 12173.4736 103497.7183 62141.5232 587717.8037 63662.6708 114774.3652 84834.9735 778645.6234 87896.5259 181477.9181 133821.8418 92766.1071 92766.1071 115936.4334 95848.1519 62118.7358 121319.7558 418255.4308 112333.201 250789.9769 61797.9841 112909.9845 87901.6218 144688.8912 123917.128 263577.9381 151462.017 54328.6862 149264.4914 130549.8691 137127.3354 359731526 merb Metal Homeostasis Mercury Detoxification Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 12696.0442 20274.74 9383.5308 18767.5386 5542.572 911935.8271 3816.3142 10627.7268 12720.7727 6221.293 241885.2131 15073.6567 9528.4701 4990.1527 4537.6847 4537.6847 7849.2455 26772.1712 14527.1125 9825.1641 14612.8866 10299.4706 7647.4066 6403.3465 16671.9519 5121.1264 25495.7118 14450.0372 13374.6167 5229.0135 5852.4628 8256.3628 6199.6787 20104.3532 158138891 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5128.8191 4863.784 2802.3375 15795.5505 2930.2962 6259.6108 5796.9179 68638.3138 5314.0037 12515.26 5819.3702 6953.1954 2740.7384 3089.9981 5783.7704 2140.3403 10330.8903 5483.6384 6871.9825 2348.2766 3910.179 9483.3565 2652.8305 10572.7971 238024817 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 36249.9589 216243.6421 108386.2187 17606.3536 61380.3773 12986.6677 19967.1177 22671.5309 94829.7446 24825.899 72764.0628 58087.9539 217292.9105 40022.5773 25214.9166 43169.4057 27534.7888 27534.7888 39233.0469 30931.564 12309.4687 26391.4361 243270.6302 8145.8504 43493.2725 17514.7557 113477.4781 29684.7122 50455.2275 30210.2517 34257.8116 7961.6337 82163.0645 209086.937 48336.0742 304466.0002 226356527 linb Organic Remediation Pesticides related compound NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 247260.1634 161278.3819 18695.394 38314.0595 28560.0587 16569.669 62138.6073 45343.5768 240277.8455 43272.1433 52177.4107 2018324.9979 57015.6964 51013.0467 82545.5442 62989.562 62989.562 46067.3146 167344.9111 50232.9688 71201.5744 76766.2812 60468.9608 35129.0485 50890.8146 60464.5352 43773.7644 122093.7175 75052.286 71191.3116 30500.4095 50642.7753 98427.1638 39345.6665 106748.7428 353544172 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 25967.5306 4051.7092 6151.8288 2929.7388 7149.305 16269.6878 7268.7679 133655.1801 6620.3167 5806.8743 8230.9956 7186.6404 7186.6404 4232.7798 10320.5001 7016.5309 6286.0025 8771.9058 5254.3633 3959.0181 4083.1468 9636.7382 3744.5805 13064.6842 9602.7177 8018.9138 4564.5443 8476.6081 6920.483 4588.5841 7696.8639 82716671 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 59406.0723 15848.1731 29107.7846 85709.9945 18481.0493 14936.7147 24730.8808 12538.7354 22803.5186 31993.8314 11588.3048 600419.2556 30453.6889 23814.7396 27202.1416 12086.75 12086.75 21176.3956 46275.1464 28343.1145 22768.0429 33497.6667 38998.3412 16192.7577 12388.9929 35695.7983 13110.522 55654.5882 27499.3314 32963.4405 15119.9387 16787.131 17559.944 13888.8281 37822.4739 378727912 chnb Organic Remediation Other Hydrocarbons NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 21739.7694 33164.406 204184.9183 24310.2115 7592.5087 41626.0875 18008.5841 8905.6933 9570.2345 16865.1214 18370.4301 386637.1126 22058.8633 16813.2701 14048.1368 53526.3775 53526.3775 10256.4872 19779.0178 18163.6183 17105.9807 20670.519 27083.591 10799.6398 9980.3129 18265.179 16960.2018 34910.509 14402.112 23457.8353 8566.8067 18252.0175 14223.0094 10095.3915 15891.8064 37726805 dsrB Sulfur sulfite reduction NA uncultured prokaryote 7064.3693 3132.8924 4223.1103 66689.0787 3372.4424 3483.1945 8200.9261 6984.9518 6984.9518 3693.4223 12119.4137 4583.9434 4347.6951 9582.9215 2626.0058 13749.9274 4626.707 2240.5537 3152.4039 4315.0167 3314.2947 4603.5985 359317345 cysJ Sulfur Reduction NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 7797.7661 3554.6354 2446.5551 359248981 aoxb Metal Homeostasis Arsenic Detoxification Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 23255.9534 19070.106 13352.2345 22165.0491 5527.8052 17600.7958 16464.5371 11423.3785 30141.8169 20471.1146 24558.9576 433632.5187 104553.501 28832.4407 15940.8249 12923.4163 12923.4163 13934.8956 29218.7756 21291.77 19289.3019 26422.2866 16303.1996 10575.6207 12144.4954 25859.0725 14372.1281 41646.9949 30060.9575 27278.0963 15152.71 20742.3266 16314.225 21962.4957 32263.2921 331698022 ben_bcla virulence NA NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 30640.3423 9740.1863 18600.4355 29136.6294 4797.1778 9462.1544 8440.9972 17373.8964 36565.5968 22231.3722 363640.5802 14500.8788 30776.3389 23443.6502 34137.0597 34137.0597 9011.3944 29636.6554 23958.9941 14241.9902 49565.5384 101799.8291 13952.3472 15880.2102 17320.247 12975.7271 209118.5067 29248.6851 28438.254 8679.8136 19002.7891 83939.7327 57161.2452 24677.9934 177840324 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7807.1398 9082.4574 6622.4893 2597.5423 6530.9593 12881.2763 5421.4775 4703.9583 58596.8037 3754.4394 6468.2276 7525.025 5259.9287 5259.9287 3026.2639 6725.602 4974.7852 11365.5845 4740.2579 4096.4095 6492.6321 4519.8197 32127.8058 3867.4217 8948.8979 10339.9156 8450.8639 4128.2725 4060.482 36639.0199 2791.9928 238761788 alginase Carbon Cycling Carbon degradation Alginate Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 15672.623 6802.3808 8676.3321 7863.3922 12293.8923 34529.2847 4187.7368 7689.202 4349.9021 4953.5436 56332.0567 4720.0144 5044.7122 8451.5007 7399.8033 7399.8033 3219.0203 10057.6491 6127.5536 5204.7958 7731.3554 9780.2074 3375.9876 6565.5982 11293.354 6112.7521 10510.2469 10810.408 7685.8324 5032.5377 4314.228 4382.8449 4133.6987 4843.8421 294495156 dsra Sulfur sulfite reduction NA Methanohalophilus mahii DSM 5219 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus;species:Methanohalophilus mahii; 4489.9196 5939.4112 3365.1207 2460.3581 2965.8878 5176.6932 5394.8131 3220.504 65214.7834 4888.4286 4881.4406 2949.1561 2949.1561 3305.0307 8205.1046 6961.1451 4869.3722 10480.4265 6229.1469 2647.3961 3293.9983 7926.214 2516.4408 11414.8777 5533.0119 8522.5469 2622.2024 3788.5049 4541.2126 2847.3246 8445.6805 302411364 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5935.8886 19603.5019 10388.8635 3421.0999 3935.6108 15107.4897 4792.0352 2170.4251 2170.4251 7218.2262 5126.7629 19520.8539 25609.0848 3829.6704 2715.21 5714.5587 3786.8029 14387.9444 144901070 napa Nitrogen Dissimilatory N reduction NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 17333.1623 18195.9135 151320.0202 11970.5046 91941.213 159968.9375 9176.3781 12749.3784 4691.943 24663.2325 15777.5661 16683.6769 182749.6559 21385.9876 27088.8824 26095.5891 36293.3742 36293.3742 8596.6877 31135.9376 18144.7193 16285.0508 12193.4219 51726.603 10645.9329 14894.5166 19451.3693 30809.5639 34392.7961 18655.6719 19875.5431 17824.0971 14400.9015 22269.0525 31283.803 10421.7013 357426032 exaa(moxf) Organic Remediation Chlorinated solvents NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 13572.0404 12051.9945 21598.2218 7651.1775 2374.0505 3643.9916 6237.8874 2711.4058 1967249.9155 4396.235 8433.9285 4261.17 4800.5176 80050.4824 7271.2246 6382.8537 237272.4361 6121.1729 2524.342 6488.8834 6841.7723 8386.2075 22991.6289 19217.8801 8294.3481 4826.4574 7918.769 18817.8025 5751.0583 5660.0416 296132151 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 10487.5165 2155.3207 2268.8377 24855.4077 14423.9511 5129.6076 72971.3906 4715.2381 7280.5348 15093.9436 7716.6544 7716.6544 3365.2945 10108.7481 4843.1862 5278.3314 5328.9002 9860.6575 14571.2295 3872.9766 16640.0522 10393.7613 8966.3314 6324.3526 5966.9932 13479.5865 4336.9136 311696922 catechol_b Organic Remediation Aromatics Other aromatics Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 7133.0073 4603.6846 7152.3382 3372.9869 2224.7133 2909.2264 6429.8895 4867.4324 89158.4874 3841.5312 5176.0129 21219.6755 2730.6716 2730.6716 5047.2074 11118.8558 5213.2385 4474.7305 36734.9006 6514.3016 5964.3388 3793.7169 6171.5172 11184.871 56107.9845 4520.4376 7233.8521 6870.8811 3667.3546 6019.9883 5473.812 5262.5747 374416888 amyA Carbon Cycling Carbon degradation Starch Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 4329.2547 6113.8119 2573.3295 2573.3295 8539.5469 6317.1688 5659.9119 4283.7581 2838.6364 8461.498 21114.9605 3559.4596 33338094 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas ruminantium superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 42580.5019 18550.7143 28125.2934 22095.0514 8281.6458 87964.6058 15944.6154 15702.9283 51223.6965 20399.3489 669653.3768 94750.2251 41128.0193 12399.71355 18880.1998 129925.6587 38541.8177 18703.7468 52314.0422 18347.309 21991.1391 64809.5939 47107.1465 75659.9828 19087.3418 111284.3664 54026.3942 32914.2634 33741.8332 23740.4952 119404389 ppx Phosphorus Polyphosphate degradation NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 11203.6147 734202.4745 20434.8744 15860.0199 186540.7182 23937.4116 6446.2678 12749.8751 15508.5758 9160.7828 15589.254 8702.1982 345857.627 20883.2971 23230.3667 30414.8885 19512.571 19512.571 12091.5846 16590.1238 14620.2943 7278.9056 21170.4591 16908.6886 5805.9623 11858.1769 51018.2144 6811.9543 35545.1225 32199.0819 32541.1971 13241.9597 11686.0967 30338.586 5307.8429 13413.665 37726810 dsra Sulfur sulfite reduction NA uncultured prokaryote 14481.7542 6675.5299 4363.845 7361.8206 6381.68 2618.7957 4856.5226 6457.2392 9638.9613 6775.7107 265372.2242 11167.8679 55738.83 5287.9898 5106.924 5106.924 8317.4575 16449.6282 7407.8814 34477.4619 11587.6354 47462.1224 4027.9119 5459.2443 13719.4644 6408.9915 24778.8511 13157.3788 17352.1105 7535.853 16436.6342 4742.9161 7473.4129 383642942 amyA Carbon Cycling Carbon degradation Starch Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 78156.139 23145.233 5039.4392 15086.1083 9828.7898 5363.7373 12265.4721 2421.0664 23052.6675 9167.5599 9315.1823 114902.3363 5673.988 6811.7778 20163.9777 18276.1106 18276.1106 10649.625 32758.743 10089.668 9111.6319 16211.1032 5460.9807 3940.809 25539.9185 17407.353 25121.2287 25297.8301 12931.2497 11030.093 4935.6552 9807.6642 38462.3863 8116.457 9013.6449 33391477 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5995.3111 16742.2133 7754.1121 5243.472 174565.9839 11149.16 3751.1637 6069.0655 11255.4705 4092.803 192947.0977 10688.6899 8293.7568 3823.4989 3673.4657 3673.4657 6120.244 17938.2016 7979.72 5702.945 24429.1918 9426.1759 4508.8919 4538.6237 10300.8254 71062.5079 19306.3327 5015.8558 11303.8776 6453.6495 6293.2296 6307.6809 5808.0531 13293.8745 387999276 nitro Organic Remediation Others NA Pseudomonas fluorescens SS101 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7574.9778 1200750.2238 24587.1178 5122.0622 2862.8882 2377.7965 32928.5234 2933.2738 106641.3533 5079.6808 5988.8895 5105.3867 4565.939 4565.939 2664.7307 10239.4307 23338.8225 8318.9435 100832.5777 29201.6366 3967.0153 2689.5874 5278.0858 4378.1009 39820.1887 8820.2248 2951.0196 6282.5565 3724.1091 14756.3638 5127.5091 384920723 one_ring_23diox Organic Remediation Aromatics Other aromatics Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 6463.0811 45931.737 127251.0149 37678.3144 7580.0677 12464.2725 13174.2699 6801.2714 9381.1202 7508.8314 286479.354 6330.9081 16210.757 10979.8584 9583.9298 9583.9298 6980.0582 25991.9689 17511.4629 22598.7392 7273.4854 5273.7167 16140.4989 7622.2268 16741.6479 10429.311 45424.4548 16688.7639 25910.9219 18589.1428 14514.8879 14399.1727 378861.2836 7665.2968 388569541 urec Nitrogen Ammonification NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 29099.5203 22151.3715 15499.3044 6962.0636 12310.6283 4920.2303 6070.945 14290.5035 31017.8128 27245.2538 17100.6034 11856.9633 29922.618 13613.3324 25524.9618 17426.7319 17695.6573 17695.6573 7411.7564 33540.61 21006.9926 9028.9295 24794.795 11526.3741 8697.8326 13733.3867 49539.3695 12786.8191 53003.7003 41743.2162 20237.0779 14960.3554 16083.1653 23289.2454 6933.2329 28923.2989 13346880 rgl Carbon Cycling Carbon degradation Pectin Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 16128.6459 42978.9709 33057.5509 7982.892 4660.4719 13850.8109 7918.5494 38247.0449 9142.7085 13414.6227 15569.22885 15569.22885 12147.5076 22042.30735 24322.60435 17104.9029 12627.24205 16698.4552 8789.8904 23960.3255 23852.7347 242238757 phn Organic Remediation Herbicides related compound NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 36332.3612 324669.3369 17660.336 11161.6999 12279.356 27567.5079 74759.5076 62084.8675 142321.7901 26091.0791 25638.4563 604615.9638 29178.7344 49804.0623 39714.1898 42094.2485 42094.2485 14222.2482 73417.4611 24712.1117 28641.9956 143367.489 84759.606 27558.5224 25320.3912 57323.8599 22211.585 147860.1784 63233.0634 64802.1 21606.6769 40879.4427 66268.0712 16377.6762 37328.1372 89512434 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5085.5358 3963.6701 11254.2013 6005.9586 10291.0305 4667.0343 3167.898 3167.898 3951.9057 6395.4207 8056.1694 11721.3218 4275.7302 17119.3795 4558.2954 7799.5396 2906.4048 4098.9839 5657.7784 3308.5395 119869716 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 24744.8377 23247.9166 26571.6112 10947.7199 5782.8128 6998.7493 18053.3614 15361.8061 29023.3613 14999.5678 18890.1045 683718.5411 61712.7631 26229.9808 51091.3333 24650.3007 24650.3007 14783.0682 148305.6557 9597.4982 25970.0896 62252.3088 26779.452 14317.8869 22903.0799 37285.9616 13420.682 67982.6349 18819.0819 22722.1122 19058.5729 13547.7863 32049.8216 5252.621 10492.0553 340030489 PRI Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 22915.214 10600.1341 8449.9615 20892.7428 55443.4522 16485.844 113330.3077 16477.2543 9686.1512 14057.5358 23795.029 7177.763 356256.9835 22612.3497 20100.968 15110.1552 11919.2554 11919.2554 13831.7117 30650.5446 22952.762 16292.7809 24531.468 27546.8203 11199.994 11038.4928 25582.0511 17296.0794 41804.9471 20981.6253 26938.7099 12314.5182 44875.1855 18476.8846 30307.6226 31687.7128 42475470 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 371374.7678 107120.5572 331067.1583 218731.8856 336672.4605 76659.7186 233513.7767 763818.8747 166446.3248 160982.2158 288375.2608 171611.703 6302896.0279 367804.5627 689698.1475 2038591.49 265780.2429 265780.2429 231068.756 249136.1339 179576.5652 1115107.2759 313486.5553 243827.2262 124397.4894 125733.9533 234728.3702 152405.396 552853.7362 520332.837 244733.1499 149776.9098 188503.3946 215781.3742 164794.5239 310257.7636 56785440 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 43677.314 17378.2158 41857.5302 222752.1988 25810.8474 21842.7297 56384.5069 52008.9009 46368.1568 47906.2761 85836.3689 509095.2848 40547.7427 48369.6846 43594.1072 29271.661 29271.661 18579.4691 47906.397 40776.3966 175467.8521 54031.8522 36057.6641 31072.0555 26352.2615 81829.2274 27957.1383 75714.9665 112981.7293 65233.4007 35663.0787 22919.9501 27659.5551 19662.0013 26854.0891 290956786 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 44108.6832 144221.4777 51602.6517 7337.5615 22604.1582 11747.9598 14294.7493 13314.0464 22763.1721 128746.4143 182857.9762 461056.1109 71522.5513 25132.2454 39145.7151 25531.1331 25531.1331 14359.5382 61639.7772 26953.8967 19012.3097 63335.4544 90833.5005 22948.8847 28103.5872 28204.3762 18032.0583 107774.36 31311.0898 42721.2685 15788.7607 29784.9702 31476.2391 17643.4113 27417.9841 82527193 silicon_transporter Metal Homeostasis Silicon Transport NA 3751.2145 6589.4114 4110.8711 90149.8148 5450.9486 4210.2948 2890.1481 7795.1141 4163.0368 7170.5353 3304.0416 5691.9416 6055.6439 3554.8163 3799.7531 3108.9775 2584.3667 8958.4615 85704032 pcag Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 44290.3442 23496.6372 57569.9611 58808.7966 91893.1715 29035.6762 26849.0849 27598.8541 30638.5739 38333.6605 51574.0549 894818.2778 53092.8858 37654.7946 45132.8212 49660.8313 49660.8313 22892.5836 103160.1514 26927.2152 34837.1809 55607.7078 43088.7716 274763.5581 36094.5813 53425.7039 46383.5329 102286.014 49934.8222 65666.6373 21105.5667 39804.2416 68085.2479 176660.479 35487.7393 156742580 xyla Carbon Cycling Carbon degradation Hemicellulose Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 23079.1599 20126.4796 23231.8738 37805.533 15804.2141 36942.5893 14141.9454 11879.9742 12014.2986 25556.4854 15133.0186 328439.6237 33892.2354 32071.2537 14793.6028 16445.1078 16445.1078 13499.1759 42762.542 16673.211 14292.1911 50503.3543 73176.4868 13261.9166 9947.5857 21766.4404 10469.5261 35164.6971 12885.3158 28657.1142 12349.9447 13607.572 17176.5925 8552.8422 45483.317 46520023 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 200622.1434 13214.7049 136764.3949 60570.6079 609664.5722 96125.5734 103020.0391 157096.5204 335745.2557 144988.6104 157255.7265 182276.2391 3292266.1796 185506.5141 183316.8656 219071.1563 138228.1619 138228.1619 127091.393 211344.7242 141467.6107 144163.3054 250044.1162 252797.8197 150877.5508 168969.8278 274674.4397 137237.6249 487577.4189 133702.2603 158167.9573 120658.1567 149657.8426 196079.588 119583.9617 125865.9916 157083806 pme Carbon Cycling Carbon degradation Pectin Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 103657.0721 62711.6457 280900.9056 6948.4702 7727.7894 3962.3469 18507.5939 109651.3392 83532.0397 639611.2097 76231.8508 4145.7426 36563.8333 36563.8333 53527.6363 320640.1959 278742.4912 439941.5189 47527.2157 2012482.9932 147489.468 70585.4934 8998.3965 55574.2494 179317.4156 90664.2046 53217.121 13893.6659 202676.9954 54461.4927 274336.7837 984776.6294 89512486 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 27550.4963 161545.188 9189.3171 14981.3088 9640.2492 12207.8338 14550.0555 11009.5655 15360.0058 11810.5651 8960.8785 261907.4891 16618.0159 11446.8038 33520.2853 6734.5303 6734.5303 10230.8382 26105.131 14495.9015 22204.5624 16362.0861 17075.0457 13564.409 8653.7838 14268.1027 15402.4662 35092.8578 17138.3902 16513.401 10954.4766 11447.8446 13145.2371 12169.3358 14463.8369 398320897 alkb Organic Remediation Other Hydrocarbons NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 5758.5948 6697.6273 9210.464 3925.7683 11763.5556 2883.9878 23303.2547 52005.1284 9170.4625 124160.1284 5282.1931 16571.4926 29075.0939 14671.496 14671.496 8103.9636 15314.1852 5018.288 43206.6258 10132.6162 39789.1722 15923.053 5704.7786 8442.4315 24430.953 30854.1287 12011.5084 13171.6519 4900.6236 48549.0153 7969.4337 11788.8176 6646.9613 154244829 chitinase Carbon Cycling Carbon degradation Chitin Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 5066.9901 8885.349 13262.6958 7944.1935 4177.8023 3272.0325 4801.8422 5560.0062 136145.6908 4236.1291 7670.6256 2533.3732 2533.3732 4740.5066 21973.0925 7544.2356 6248.5392 12711.8257 10116.382 5668.7294 5747.3162 11487.0498 5343.9772 15807.5461 9640.8508 12618.4409 4774.2994 6933.8415 6922.7704 6590.3498 7368.8728 148257564 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 935967.2392 54233.3683 7402.9562 2679.8591 2679.8591 4229.843 5334.1302 4425.5001 13731.1651 15477.0033 10032.3017 8425.8474 10609.2607 15158.3624 4301.5163 4579699 catb Organic Remediation Aromatics BTEX and related aromatics Frateuria sp. ANA-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 17584.6438 33014.51 18851.0151 12646.8707 8499.9984 31100.2413 3138.0948 5055.6897 7606.3823 16887.2311 323031.9302 10255.3698 23424.5448 54309.8405 28052.5473 28052.5473 13394.9241 28692.7964 7321.2872 10599.1924 9745.4802 13308.9555 8764.3054 8957.726 8144.1267 3974.952 23523.7645 11198.1338 15250.1509 5145.4439 9610.9315 7539.8298 3171.9568 64737.5833 109452440 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17865.2285 9646.7128 13905.8991 20336.7639 11464.5052 14137.5626 7560.6353 14202.7448 13670.9965 6015.9286 256505.2976 12308.4842 19722.6361 9165.6168 7807.5912 7807.5912 9685.1996 21694.1327 13420.6461 16659.7556 26716.3358 17422.2284 9017.6203 7562.5529 14253.5633 8949.1121 27612.1645 16441.984 17224.2772 100467.2777 7809.6729 35019.4468 7634.1463 17760.7025 81176227 protease_serine_fungi Carbon Cycling Carbon degradation protein Penicillium nordicum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 6261.8584 5987.3275 21574.438 2640.3716 22384.7218 5343.2949 22559.0412 74984.077 4323.2711 6812.37 4626.0253 2457.5211 2457.5211 3164.998 4672.4565 5233.0045 8591.2395 2292.0859 7321.8381 8283.9033 2635.9043 3730.3954 116743242 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 29927.7271 16260.2856 8125.3244 7615.9066 14550.4676 9010.2061 17263.5593 3247.6695 8221.3303 12741.0904 6939.6156 245469.8523 32147.9078 11471.446 6736.9432 18865.3647 18865.3647 4554.3777 14059.4414 11268.9821 17405.6798 11218.7932 20524.7976 5279.0046 7712.6422 13941.4731 5360.4348 21088.0369 10158.8606 11818.1378 18910.3842 11811.9327 9137.2155 7924.5558 16893.4468 89345149 mer Metal Homeostasis Mercury Detoxification Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5800.9817 9625.8789 14797.1003 10188.3693 5983.4292 7806.9491 7102.2482 6072.047 792742.2572 11769.1013 135782.0415 12495.0209 7087.5481 8594.4811 3876.0878 3876.0878 7592.2446 10286.2071 7545.8696 4754.7639 16685.312 6132.0518 12051.2834 8425.2021 37179.9956 11434.4241 85145.235 17560.0446 11467.6053 5268.5156 9016.4951 7658.2305 4955.1945 27295.4826 117621087 cysI Sulfur Other NA Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 12000.9907 28766.6463 23519.6288 10567.814 9063.3481 1748.4981 19627.815 15329.9931 67702.3613 15596.7183 159519.7265 7289.9566 8909.0905 17966.2323 4986.8159 4986.8159 5846.5983 38917.3811 7368.7338 9646.8728 18394.2691 16476.6871 6611.4171 6932.7336 9134.2565 9121.2736 28755.7954 68067.0556 21275.8383 5542.0761 6911.6015 10469.3449 3921.0056 8706.9944 229320480 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 47171.668 17980.8076 26910.4046 69169.3885 10471.9537 15762.7658 12618.9505 8613.3646 11514.0117 14270.2981 8088.1271 437221.0758 50584.2825 23791.7112 19039.6333 12579.0536 12579.0536 10486.1817 24000.358 18977.9183 17597.9039 20882.5698 28528.2974 14684.9247 9850.2855 35091.5495 12318.2699 41323.0881 24145.3482 21839.6105 13775.4934 12875.5599 16217.1972 11609.1203 25247.4774 330934129 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 13716.9753 5437.2523 6541.8651 574481.6774 6323.9449 7126.8407 2937.2986 6593.8076 8346.5304 14773.0738 117618.4858 15594.187 10080.6651 5383.0034 5185.5156 5185.5156 6625.7385 17766.7073 10408.1791 11791.5791 14981.3353 7495.3166 6961.6213 6902.7799 13553.5259 16033.4533 22924.75 8139.1142 13067.6922 5660.6147 7821.0972 7531.2805 7133.9413 10284.1029 163743279 ppx Phosphorus Polyphosphate degradation NA Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 7701.2076 77514.025 24772.5559 16166.0462 5371.945 11881.1341 6530.1159 5243.612 6919.8254 147062.0598 10963.1819 13997.7159 17451.5822 12451.5627 12451.5627 5839.6972 14951.7219 12602.4958 6817.1384 7312.6448 22466.7811 3436.883 4356.1761 15405.9056 3930.0376 21769.1059 15139.4071 16758.7969 4613.8229 6000.2104 8245.2846 3477.9733 12581.4137 45386113 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6895.6686 5133.0775 10343.4989 2972.4082 2798.7387 6491.9198 8583.0954 14267.1035 14267.1035 4636.6813 6148.7287 10610.4919 13139.6675 9990.192 189193225 rgh Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 97559.3306 15475.0428 69714.603 33896.2842 70770.9277 9747.7819 79362.3497 95807.7514 45504.3759 29579.3877 838556.2712 402673.2451 48720.5379 43120.6382 55299.9991 55299.9991 37868.1061 48358.7292 37813.9628 41342.2059 71786.7336 22095.3246 32600.728 18126.1618 88333.7614 36313.7978 70353.7214 51263.4473 46135.8009 25128.6012 47578.7333 346970842 axe Carbon Cycling Carbon degradation Cellulose Verticillium dahliae VdLs.17 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium dahliae; 86839.3486 35573.9602 272218.9622 61917.1473 162351.507 31810.2884 42702.3104 73549.1244 63318.0086 53469.4077 107795.5892 84714.5265 2549062.2342 158844.9042 96354.641 74980.8807 92100.2174 92100.2174 44887.6502 74779.5486 235237.5406 52802.8601 209541.7529 601388.6511 108806.495 50410.8624 79049.2238 41456.1692 289117.4505 74793.6147 82773.4239 56090.2158 67971.1134 95181.263 110720.6026 113541.5367 68343000 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 17175.4227 11978.0876 20382.0336 135873.631 30847.8234 5758.3691 191303.4736 3237.9503 38021.8497 28092.4358 35860.4048 449290.844 98784.2248 55741.8452 44530.7427 24060.6415 24060.6415 25954.3007 115072.1122 31408.1624 10276.4353 24434.2567 6295.2488 11668.3199 35872.5219 60028.0493 19987.9743 76786.689 67883.5698 38802.0489 27941.5841 28557.5186 46606.9515 8645.8582 16090.8487 227483287 tktA Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 4650.3489 15236.107 2241.7949 3354.423 3540.8239 2622.2724 2622.2724 3358.2779 7729.3368 3603.4283 7368.8648 2506.7338 9168.7656 5166.252 8288.2776 3345.3693 3349.3106 3479.9539 3005.2439 5194.0742 121716852 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5458.4767 4891.4936 3532.4338 5148.421 7709.4946 151004.4026 6899.1973 4870.9595 2575.311 2575.311 7327.813 10316.9078 9103.5534 6140.4715 8245.4248 9262.3938 3303.3099 3177.9549 8908.3555 3381.9251 13360.2878 9400.9439 10907.173 3429.9561 5705.4936 5425.7543 3348.0919 14782.8149 190698117 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 222935.7343 29946.84 400465.644 161233.671 105234.9626 16523.9336 85938.0251 158180.6623 94700.7273 112054.1446 200157.2561 101233.6846 2223379.117 119344.2973 151064.0664 213263.4338 143192.0969 143192.0969 89015.9103 172068.4587 92020.3566 489017.495 257521.3014 233347.1584 77003.7635 71463.6364 128519.1597 198885.0706 259667.5233 154079.4977 193948.671 93680.4396 125358.0577 131478.5945 67296.3596 190288.6081 339285993 xyla Carbon Cycling Carbon degradation Hemicellulose Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 54588.681 9679.7648 114191.5489 31590.0112 12380.9785 8833.5569 8522.8642 104974.3349 17053.7338 13461.6797 238012.143 94569.5629 21247.8772 27007.417 23521.3433 23521.3433 12928.6148 30203.1009 20374.2957 21086.8642 18449.2494 21225.6717 21398.6837 16701.5899 20794.9281 9630.4679 39126.5921 23170.1223 27060.2889 9173.3593 16799.207 37780.484 16417.3735 31278.8474 238021853 nfsa_2 Organic Remediation Aromatics Nitoaromatics Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 4667.7881 11185.6824 8416.9401 5764.163 1791.134 5711.2174 7074.5714 6369.892 198874.9188 5375.059 5979.8607 12581.5748 6352.9048 6352.9048 4144.2009 5355.0036 7141.4259 5363.5708 4935.4044 4699.5258 9682.2434 2339.5817 6957.8386 5803.1973 11143.4645 3846.9379 5890.951 5199.9995 311900250 endoglucanase Carbon Cycling Carbon degradation Cellulose Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 5768.5347 10534.3902 3748.495 4752.8283 3339.6398 4094.3299 144330.8125 14603.3652 7733.1485 10277.9002 5206.2622 5206.2622 3829.7041 6719.8638 6737.5671 17379.654 4116.276 4967.1819 2688.0698 3469.1874 14577.0494 2563.7549 20300.4874 9159.6406 6805.4285 1992.9356 6307.0592 4246.5451 3450.0992 6817.3249 148656574 cda Carbon Cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 24395.042 7926.4239 9990.20665 21603.7 5468.9736 33876.2461 16826.91435 23357.49385 23357.49385 55302.71 19143.3967 21567.15445 8467.32275 317506688 amyA Carbon Cycling Carbon degradation Starch Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 9155.964 10830.0126 4601.7811 11906.2678 11534.053 8643.273 12586.2627 4759.5249 13833.6237 7250.8842 69278.1227 19875.1428 13130.7873 10106.801 19897.8102 19897.8102 19889.3858 13407.0807 7833.1018 5487.6 9685.4419 9265.3115 6724.0716 4249.2519 12961.9712 6378.8198 21427.8036 15884.0642 9886.9365 4077.6714 152929.1316 12155.3982 4636.8027 16959.6282 376384573 pcag Organic Remediation Aromatics Other aromatics Klebsiella oxytoca 10-5243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 162006.5119 12256.4727 271775.0673 24308.4477 8332.3043 20151.31 9381.7077 10473.3618 8910.6642 11649.0401 16792.9283 10275.8684 345448.3608 19376.8569 32149.083 18019.6332 12553.0239 12553.0239 12327.9894 24179.2959 16318.7969 30362.3589 21241.6853 27901.6059 11645.8452 10895.3866 80384.9398 7143.1078 39539.8209 22295.7436 37623.2488 8811.8274 15276.9527 22513.5497 9948.6584 26409.5216 117608568 amyA Carbon Cycling Carbon degradation Starch Magnetococcus marinus MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 13870.7682 359839455 ara Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 62506.9789 233867.7649 44627.1087 20198.8648 7603.8529 86155.6447 42186.2113 28311.2886 35396.1214 90269.9 66476.4493 792843.5264 40674.7234 49204.3882 100683.8807 73447.75 73447.75 30415.9307 107578.7657 34356.2263 36242.9973 128742.3876 33187.3796 46751.7242 34898.8398 41031.199 39596.0694 168321.8667 69260.8934 49453.9336 98423.6031 61460.1862 63321.9361 103651.9842 60692.1032 284037012 xylanase Carbon Cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 5770.2349 6109.1385 16353.7007 23308.1159 10498.2396 12139.1786 5929.7495 8952.6846 8649.7691 4595.8268 109615.9097 7334.5303 6886.5238 6380.721 6137.6572 6137.6572 4328.7041 18542.6805 8032.9889 6023.3855 75606.5501 6938.6906 5339.5571 14176.1152 9828.2706 7434.9391 58200.7873 13037.2438 11998.5841 5360.6968 5811.1792 6012.0474 7039.5791 10951.5946 339329034 pcpe Organic Remediation Herbicides related compound NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 10010.6277 7622.2586 35048.2978 34229.7529 12600.2748 3945.4479 47134.9763 2124.4822 9042.5793 15059.2378 8817.5044 300556.3984 38167.8888 41899.0008 162174.4865 16712.6845 16712.6845 7282.3291 17810.4834 13956.6665 117845.1753 4980.4949 12635.2312 3707.7707 8107.3913 14725.9459 5265.1999 20048.9049 10767.6328 19373.776 20230.5456 6955.9917 9420.4559 3677.4236 11273.4761 294935419 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 8641.6752 2623.7074 15059.2179 3250.7636 4724.1291 2662.6402 96728.6344 3928.564 2787.7041 2787.7041 4951.5966 8817.8679 4217.0583 6994.5736 8200.1347 5038.5928 4389.9411 5495.7027 13117.1083 13813.5954 9792.2334 2519.9792 4464.5347 7099.8362 4016.8771 6245.0372 404259171 cmci Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 6061.1043 5153.3564 5562.2551 4073.2544 3653.5267 5814.6318 115488.581 5483.6612 4102.3731 2145.5136 2145.5136 3607.6311 12692.6834 6884.2081 4636.2262 5367.7486 5231.7022 8424.1584 2242.13 10119.7244 7269.8198 7059.5376 3744.0898 4606.2303 3401.6611 7652.8871 7245.8981 377537448 amyA Carbon Cycling Carbon degradation Starch Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 5813.4021 32056.3092 113590.5288 6652.509 2585.2925 2585.2925 2359.0402 378725977 glx Carbon Cycling Carbon degradation Lignin Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 7971.6706 2425.4915 1651.5535 19095.4421 77379067 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 4513.2609 7131.7288 9361.5603 9436.7515 2092.2243 4145.1211 224942037 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 45882.1162 20548.1264 18261.0543 41567.1238 75728.234 17960.2938 69813.6296 18149.0256 29160.3518 102812.1449 33773.116 450987.77 26069.0091 44292.3433 34031.0175 20338.8042 20338.8042 26334.0413 39502.0124 19048.1133 26268.7101 57798.3655 33161.0871 16132.3218 27105.6473 39373.087 64525.4769 70873.4492 23596.5419 46248.6342 41477.9039 22777.9876 39745.6285 22995.9121 26353.0834 308069650 terc Metal Homeostasis Tellurium Detoxification Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4982.9074 154155569 chnb Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 57379.0659 7922.9124 17382.3827 95911.6684 15301.3731 22933.2125 12894.3002 38487.6868 21341.2804 260900.0228 28239.9586 26589.7148 46294.384 30895.0649 30895.0649 16560.2363 49018.5675 12308.4096 13380.7112 226835.2934 24723.7071 18203.1677 37430.2757 20344.1553 39096.3009 239628.8123 41488.3599 28641.9222 19135.8946 34196.1918 15455.6264 9004.2495 13208.1958 119513072 PRK Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 3844.7924 9683.2881 3587.6609 6016.4618 4665.8237 7499.5183 3293.2559 105436.8388 6660.3388 6198.3236 6784.6314 3175.5042 3175.5042 6188.6399 14322.4259 9180.7705 6075.4788 6764.2905 9311.3364 22319.0412 3046.7346 11022.2015 6954.6338 25473.3603 5897.2318 8645.5694 3179.5542 3502.7567 6558.5903 4307.2359 5136.4946 109702617 cysI Sulfur Other NA Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 5298.4644 4201.8525 10722.0681 4845.2222 5800.9685 3240.1336 4984.7691 4651.995 3280.0491 105934.1632 6239.0839 3490.2586 2230.343 2230.343 3554.0992 9864.2806 4569.4849 52333.5794 6630.3802 27256.623 2195.9038 2703.8279 9949.0441 2964.181 11295.5456 6458.4941 3386.3546 3734.262 5430.0669 3402.2282 11198.8579 359826800 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 4762.3647 7555.6988 6075.7619 9323.2867 4884.561 2777.442 5397.9133 3945.7349 4392.0085 11831.3947 11150.4449 73809.0951 5093.813 31264.7897 5821.2399 4219.7533 4219.7533 3692.237 9005.7593 8923.7228 14010.3199 18129.5919 12479.9992 4410.4672 7625.5382 9185.1443 3712.1242 15727.9345 8369.8876 9874.8349 12922.3899 6828.2107 7088.8384 4770.7634 11171.2829 313154435 soxY Sulfur Sulfur Oxidation NA Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 12870.1821 3931054.923 1234936.0432 26457.8768 7877.648 3822.1629 425244.5925 283785318 tehb Metal Homeostasis Tellurium Detoxification Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 4838.407 19471.7704 4187.1243 62625.7938 3422.5464 4536.8485 5349.2182 3781.9695 1747.9451 2918.2412 151563211 ben_bcla virulence NA NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 14870.6125 16134.5459 5546.6023 8099.468 20093.1512 7458.7402 10227.5367 2831.1774 9939.0626 11243.5073 10394.6671 417551.2371 8177.7166 14882.4198 6728.557 40079.8858 40079.8858 5666.349 38412.4716 29637.2355 14065.5298 22121.5629 18330.2488 8792.1578 26131.9238 13616.5486 36737.2591 30821.7829 14681.3985 19860.0684 7613.4431 10705.2696 13968.053 12892.4752 64634.5769 327373658 alginase Carbon Cycling Carbon degradation Alginate Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 13122.755 19710.8494 5253.2291 112676.7823 38908.779 3825.2059 8274.462 17997.1819 10775.8188 228174.5036 10602.5173 7817.4859 6215.6104 6178.832 6178.832 5210.3476 17451.034 10971.5076 12680.4059 14486.9773 6212.9505 13713.1073 7828.6811 11394.5121 10255.2888 53397.8433 13983.5928 17464.7422 10070.9331 7992.5869 10410.3566 6867.088 30739.1985 114150714 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22598.751 14626.9346 7550.1665 17051.9468 14796.2646 40151.1094 18396.7505 9897.8957 14805.4318 18807.9751 33873.1783 261471.2037 23733.2811 31757.4697 23747.7249 30439.3375 30439.3375 90817.8253 47068.2704 21143.1678 42281.4319 31032.4223 15048.84 44077.1803 25905.6065 44800.6158 13484.335 62174.1611 45987.4208 42070.8023 9300.1892 38332.3199 30183.1195 14116.2719 19445.674 319413953 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8142.8236 12211.2568 15731.5374 51199.4873 8141.8093 22195.0901 3820.6582 8102.5967 14513.8727 5941.3522 141441.8732 12026.9625 14259.052 5338.5462 6207.9347 6207.9347 8001.5988 17933.9586 15223.0137 23556.5504 18558.4157 12671.9767 7525.2899 6400.8471 10941.4402 7920.5451 28042.5662 15864.9313 17139.7411 8923.2868 8735.79 19095.9406 7826.638 24085.2208 134077889 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other truncated ORF superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6484.4206 7190.9292 7655.0722 77928.6011 8880.4332 8842.9314 3449.1168 6108.9498 5202.7202 5678.0315 4516.0422 92345.6202 6354.5514 4475.5412 16331.4742 4885.1267 4885.1267 84106.0779 3616.8835 45856.5966 5953.09 4115.021 12055.1116 2772.2747 11303.1251 7894.6715 7121.3021 3535.4331 4602.0558 4611.9247 2451.3088 4177.0516 229362740 cysJ Sulfur Reduction NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 27848.9638 68870.4937 12103.1672 4864.1064 45750.3997 20998.8602 12822.9029 12665.5745 103099.8202 51378.372 340848.6992 14392.8893 17918.9708 26778.0563 16653.057 16653.057 12746.1636 23210.4008 75052.3484 18913.3178 23688.1609 39160.7111 6302.8949 13694.4439 22505.2247 24197.4291 18984.1478 23093.6396 43079.9668 13216.7106 12859.6669 21868.8788 15428.9319 36388.9939 169793642 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 12607.5339 13437.6176 8339.9539 4873.1703 11230.4502 14431.499 3610.6121 4812.5145 3468.0727 60556.8184 10767.0213 6956.7667 4219.4743 4219.4743 3536.9858 5594.5113 6000.3911 6812.7089 12462.5592 4794.4695 2258.3596 99383.3336 15362.951 3922.9852 9013.0129 6250.0957 12086.597 3619.2494 4188.2068 13076.2882 2512.0155 6061.8748 269929900 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 6704.3719 3988.9961 14982.0495 6736.3234 5261.5462 72912.3156 4752.0989 2895.3234 152637.7375 10777.9724 5539.2596 2783.1562 2783.1562 6086.4444 7499.6923 8407.5655 6803.1832 6302.4634 6346.0977 2489.7039 3319.0503 9943.7617 4320.6722 15866.7102 9807.646 9551.3206 6756.0936 4211.2277 4969.3318 6733.9836 8427.2722 99030634 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 6471.3014 30308.0786 5658.8704 2531.8556 2821.3878 2125.7326 6402.9092 8691.376 4592.2924 146098.631 7078.1697 5189.5969 4984.0547 4984.0547 3261.5622 19051.9107 7806.4046 4308.3358 8852.9736 4066.6702 2848.7976 5410.5229 14132.4715 5717.465 9344.4364 8103.0058 17130.4421 3403.4555 15291.8875 8306.3267 4542.0831 5858.0113 119391609 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 45494.3995 24436.0063 17332.0201 65706.5594 13384.9469 12981.2963 41697.6569 17960.6153 87872.6845 39529.815 30895.7692 740907.8496 23112.4728 51726.1269 41325.1036 13563.9485 13563.9485 18585.5742 44158.101 32766.0134 19338.668 35791.2237 44460.0154 18039.735 28565.3764 63471.4498 26069.1152 64953.8138 73597.1868 28836.1723 15359.8229 19104.6205 27116.9229 11269.298 21626.6352 306431383 assa Organic Remediation Other Hydrocarbons NA Aromatoleum sp. OcN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum; 4511.8015 12154.467 13605.9607 4830.8149 98647.0764 4070.9184 3871.1418 2174.4536 2174.4536 5855.8058 7111.2841 6554.5481 5543.4769 3172.0515 6053.0603 9218.9404 7159.5554 2282.4716 2989.7771 3791.6773 6176.7156 114739978 b_lactamase Virulence Antibiotic resistance Degradation Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9554.0817 18081.7402 8613.6583 8121.4422 2956.664 6666.0186 9892.631 5114.4474 4389.8855 6751.5728 7429.1801 17919.9109 17919.9109 7635.6697 8962.442 9318.7645 7941.7991 57929.3966 4516.2088 5133.079 8600.1879 7243.8637 22800.7179 9642.9459 11365.1219 1869.4238 8440.5064 11237.0235 5090.9783 333479780 amyA Carbon Cycling Carbon degradation Starch Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 4174.7088 5307.4011 2402.3853 2817.624 6215.8097 3564.5901 1855.1381 2579.8988 2802.1188 5390.4301 218673552 endoglucanase Carbon Cycling Carbon degradation Cellulose Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 41149.9824 14325.1091 30441.9465 796595.3727 12228.4543 326723.3451 18027.6822 12567.2578 9788.0656 13852.7544 47880.112 299196.9553 51142.5366 34896.3375 21703.8051 23915.3345 23915.3345 15981.831 52441.5474 221936.369 35550.7864 61448.7445 215709.7108 23033.5174 15251.2083 47097.4621 45745.5657 45605.0556 36269.7035 43183.7635 13553.7037 30356.6897 38317.5606 22828.7706 16195.0577 68164680 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4959.5231 25255.7301 3005.5106 7775.3591 4795.6106 5852.1453 13519.2535 13519.2535 3666.6102 8814.8853 7292.8778 4961.2407 3157720 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 23910.8717 15338.717 31734.2112 13914.934 3926.0987 22961.921 45060.4922 27475.0894 20890.4286 40095.1452 22980.3449 510325.717 28564.0294 26361.3569 34623.3687 35287.4985 35287.4985 15850.2589 33586.5384 27499.7921 1218296.1474 36198.8473 72940.3557 15308.7374 26311.1331 50509.6274 33611.7937 52334.8257 38073.3278 36688.212 14183.0124 36601.6174 21893.9615 20458.4267 28514.061 365539162 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio ordalii ATCC 33509 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 17917.0326 8286.9273 47759.8017 11667.1101 18804.735 9981.548 4814.6402 11061.3593 11292.6452 11507.0318 8489614.0972 5347.8706 13981.4337 10118.5961 10118.5961 257237.0639 16257.6939 7228.0946 4895.9179 10926.5865 6602.8482 7657.2396 25223.8426 31966.5694 26192.2512 38842.0592 8942.5245 6760.7335 25847.9915 12717.4354 7785.1873 25814.9489 365879556 SoxC Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 46020.0954 647875.2749 12478.0516 6643.147 7724.1103 8183.5389 2655.9642 8912.8924 13551.1698 10999.1088 138152.1957 6517.6535 9834.6256 9898.7995 7881.7974 7881.7974 8298.7784 18075.9322 97584.6289 59996.2555 13917.0256 35842.3028 22783.525 16651.9117 74009.2961 11462.7799 26013.941 312309.8404 30131.2078 349816.1113 6580.7516 8965.96 8109.8559 44881.31 158523592 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8921.5781 9028.8691 11855.7104 8618.2458 6801.9221 4584.81 8509.4918 9955.2432 4858.6463 179921.9851 8870.069 9781.3395 4631.2693 4690.4726 4690.4726 8806.0902 12157.6782 10477.3138 54171.9397 14824.4816 21251.045 5042.0665 5177.538 17960.9177 5345.848 20179.5306 12950.5582 13962.0475 6607.8315 11691.6561 7645.2333 6572.3911 16862.9764 15552738 mmox Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium M84-S38 superkingdom:Bacteria; 4378.1157 4005.474 2716.5316 9672.3816 10601.895 5916.7374 17364.6265 2480.3386 5220.6626 17170.038 6319.0216 32041.5463 4935.4412 8833.9245 2690.2403 4158.0889 5148.0498 389792854 arylest Organic Remediation Aromatics Other aromatics Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 279494.7715 18969.5078 332867.2004 72856.0567 155370.6519 70185.3359 81655.3467 209381.645 138155.7981 147772.3312 188477.1131 179733.1253 2657795.9235 350921.2504 200876.4456 214152.0144 203393.6738 203393.6738 175076.6031 208997.3437 81044.7612 187334.4813 147282.5604 163596.9704 110641.3467 124226.6206 114182.2406 162293.1896 372085.4497 214994.8675 217042.5925 85674.3363 134298.8852 159888.163 144813.5111 175350.8717 317169854 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 9645.8428 7144.0239 6706.5733 12740.5848 4669.0227 231465.5254 4429.1716 31288.2171 15281.0696 15704.7266 7088.2272 258593.9779 6453.0546 9031.8686 11716.6374 9248.0556 9248.0556 6063.0127 19276.8824 4532.4879 5160.9625 8208.2372 7070.0469 6344.4915 11329.1396 7409.742 8536.3554 19394.8427 20414.5378 14792.3958 5612.8911 14651.9481 6157.9377 3677.5046 17646.1083 290570846 chitinase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 73168.6523 26532.7672 107461.7817 73302.1359 97132.8828 5121.3148 27464.8885 61521.6853 41165.6321 46669.3186 90172.0667 64495.6924 972122.9975 61598.4952 459748.5971 79326.1319 43831.3861 43831.3861 49267.9702 207019.2812 61941.056 96058.0762 428070.8091 31316.0601 92995.6161 53664.98 63367.3566 76818.8975 334330.8792 73457.5813 194177.2363 24283.0157 88847.2122 61156.5117 344723.4295 55003.3058 375080018 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5673.9132 4034.6019 3307.1459 5553.951 2620.6738 5392.6271 2792.2138 5493.9757 9572.4249 39648482 aln Organic Remediation Others NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13474.2124 10137.7295 22214.0487 4794.6118 19377.3079 7262.6874 7159.2207 13073.4024 45248.5234 8020.677 250215.7402 17527.2153 13961.5015 14334.1968 6840.6457 6840.6457 10459.027 26195.917 12972.0894 13556.2136 25612.8958 17332.6352 8004.859 7815.7228 19606.1974 6002.7841 25929.2503 10127.2194 23743.4673 7024.3989 28918.4943 15852.9038 8868.3813 19309.7305 86742880 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 22581.1698 51616.9059 30202.0022 15558.2142 8548.9075 7306.745 14763.4881 7125.3012 13028.5747 15680.9269 16421.4149 288933.8703 22274.4736 32963.1972 18750.8091 8897.214 8897.214 8622.9372 18718.6537 14778.266 13462.0143 25087.4526 13362.4023 19894.779 11045.772 19447.3962 32878.1741 38991.4605 5774.4806 21578.4563 12399.8193 14179.8179 10548.3814 6732.1649 16527.5082 258650533 urec Nitrogen Ammonification NA Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 114867.3448 18261.2177 91356.3313 41668.1752 39812.6204 15565.0659 44279.9016 85405.6156 48998.2141 63987.8644 105029.9696 71250.387 1841364.1905 57295.4867 96465.8237 151251.8295 130381.5548 130381.5548 90860.6243 118405.0139 41577.3403 120617.3201 174752.5367 180816.4084 43783.4557 54461.1705 86936.706 51096.7113 133046.4837 71801.4778 94940.4049 43548.3247 89969.8311 294491.2617 49027.5673 167775.0924 409104266 thl Organic Remediation Aromatics Aromatic carboxylic acid Thermacetogenium phaeum DSM 12270 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermacetogenium;species:Thermacetogenium phaeum; 12280.4977 12154.6932 2261.7627 2612.2349 10331.4706 7985.3844 6693.983 119125.5504 7123.0031 7418.3508 9866.7821 5370.3046 5370.3046 16137.252 12524.7626 16382.1159 4559.9105 16004.9221 6412.4935 4123.7369 6177.8025 7911.1231 5610.8121 39127.5582 26536.0065 12797.109 6142.6243 23668.4074 14914.1271 3338.9769 6433.8516 83025955 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9202.6841 59503.8515 2677.4139 3807.326 2347.6264 5597.2906 11421.8582 25482.153 142397.3408 8911.7498 9372.0461 3812.0181 3812.0181 6328.1057 13467.9599 8799.3292 10565.4376 10528.8664 17285.1653 3601.0771 5553.3534 12106.551 3741.8044 16132.389 15706.835 15760.5763 4730.724 7210.314 8706.1778 5289.4113 12441.6574 300333169 atza Organic Remediation Herbicides related compound NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 13874.4153 14104.2779 7268.4572 7347.8383 13626.1435 6179.7557 20135.6046 46087.5772 40057.7603 10222.7629 190949.8772 9803.2632 69932.317 24914.2112 12654.221 12654.221 5404.2307 23673.2901 14728.2507 28608.3977 20838.8497 15914.6361 21880.1376 15714.4318 27150.559 13741.6462 32977.3393 15309.0028 24833.4131 9247.5831 11767.3867 14261.1468 10137.8752 20266.6758 84517386 ppx Phosphorus Polyphosphate degradation NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 17148.4874 4039.274 4039.274 42499.9375 9753.2123 3346.7644 19080.0311 3452.191 344343392 PRI Carbon Cycling Carbon fixation Calvin cycle Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 160955.1646 52136.2988 96064.2973 352992.1243 116767.6905 71414.2546 112003.17 139254.8371 57780.3436 110989.0599 124164.7276 79674.8094 3094870.1655 132676.2163 155600.053 150267.7197 74909.6234 74909.6234 114725.9609 179850.6215 132871.9866 141020.1096 204028.0541 218553.9648 65182.8992 52698.6242 118265.7319 60830.9149 205448.5209 114735.3732 131780.6102 57567.5329 83889.8473 107860.6294 65107.7096 157156.9615 21306018 B_lactamase_A Virulence Antibiotic resistance Degradation Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 15685.3111 4413.2757 2655.0186 3101.9 54024814 nagg Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 28658.9454 6967.573 5179.7361 3455.0066 31425.2938 5475.5994 12220.5181 15131.7231 148806.6725 5592.9401 28162.1453 43479.3144 8278.7686 8278.7686 20708.9914 11078.4457 6357.7059 12020.8564 28106.0981 9633.8028 9627.321 12026.1993 8128.3214 58677.6204 6932.0113 42306.9469 12863.13 8212.6358 8228.991 7697.2377 6405.3816 194294277 beta_agarase Carbon Cycling Carbon degradation Agar Pseudoalteromonas sp. JT-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4620.7303 76856.5687 2077.1695 5194.8998 9329.2521 2553.1334 55978138 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6698.0794 14373.3983 8626.4029 11905.4222 2681.2961 4930.1725 2465.6071 70451.9371 4170.602 4362.0009 10235.7466 12321.9438 4960.7527 14854.0435 4642.3633 3591.9714 4698.7889 7058.9964 3636.5755 55576.9973 4028.4183 5959.7582 2211.7086 6106.546 5371.206 6505.6295 6450.8314 170933874 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 364263.5546 12003.0475 326774.0509 554151.9755 220476.4942 148539.7686 327490.9995 136198.6355 206510.0944 171110.8054 318451.4923 135310.9881 2883641.8837 136366.221 402382.7784 274216.4441 227721.252 227721.252 114701.8541 210802.4612 116883.0253 155951.009 239228.1287 150649.2939 139472.0839 124282.0055 238587.6245 144200.4574 603055.185 226551.434 204651.3825 93528.9062 130876.0905 165876.9669 72652.7613 565968.9382 381160122 arylest Organic Remediation Aromatics Other aromatics Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 24350.5319 22381.0715 16017.0693 47961.8551 15114.5502 7925.2871 117090.2032 38264.1247 22016.9341 14490.0734 15008.5984 14294.5533 146699.3596 12037.5429 17569.4689 25939.1462 11108.5345 11108.5345 9517.7423 18517.5483 13965.3079 70444.7719 24845.5686 7651.7023 10176.7185 14312.8901 14868.5259 75649.2471 40323.8136 16596.1227 22483.3661 10037.4646 19351.8099 15674.8129 7830.1575 16356.8212 323092225 terc Metal Homeostasis Tellurium Detoxification Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 11129.4419 5066.9463 13327.0297 11021.8976 12246.0272 4957.8344 4445.523 10831.7493 8647.8297 4598.2068 197416.9428 11909.7563 12882.5104 5521.7459 3126.3268 3126.3268 7215.6257 16904.0986 14444.9875 11372.1107 13080.6143 11611.011 5873.6556 5471.6535 15554.0381 6740.4751 21394.6953 10589.1414 14215.5936 6104.6161 7523.725 8772.3613 6414.0248 13796.1558 62149134 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25207.6862 13297.9845 13851.0063 19178.8515 10971.263 6899.5511 12648.6371 17434.5188 10587.6609 16746.1246 21590.1191 8245.331 474598.1042 22312.5949 16993.8747 13441.0543 7427.7305 7427.7305 12894.0509 21623.7881 15469.9578 15167.0444 23925.6796 27138.8172 16395.6693 11580.6866 21939.7921 8444.7237 26641.322 6024.2293 22143.5319 10756.5968 10944.9289 12499.6655 10164.0994 25719.3544 110585921 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8197.1398 6963.4708 5972.4079 7603.0456 4653.3073 9527.896 6504.3638 3911.2377 7342.7367 6716.2843 4092.1001 210100.3372 7906.6133 7314.1414 5052.7912 2445.4275 2445.4275 6344.1507 14105.0526 10040.0565 7212.2224 6684.427 12117.3331 5281.3664 3535.3112 12625.3469 4041.0893 15107.4875 7961.405 11230.5336 4178.2811 4192.7775 5280.2837 5086.6471 11481.454 326331456 mer Metal Homeostasis Mercury Detoxification Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 19633.7373 22405.4073 5600.8859 7596.4348 8873.673 21233.4727 43972.9178 22852.7641 20485.2112 12806.78 16791.2927 141988.5647 12413.7458 28563.5789 51049.9523 10246.275 10246.275 156363.9517 21212.1274 15671.4835 426895.3741 11815.9873 11698.5863 26184.5575 26491.6309 22131.8661 15799.4461 58981.802 27064.2515 24536.7807 13061.1454 23444.1498 32581.504 63453.847 75597.718 114539885 pgk Carbon Cycling Carbon fixation Calvin cycle Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 80025.4338 15639.539 19646.4315 121090.7092 61767.3724 37144.6762 22729.0842 31759.2066 8112.4888 28518.6565 24126.5368 43840.6601 1136456.0539 102802.5845 38528.4848 134975.861 52795.3 52795.3 60554.1297 34160.9784 37185.4876 35694.7888 25055.5182 581826.7583 48151.8206 54323.3609 39984.7255 38428.9888 91173.5549 34372.9603 52867.0475 15926.0015 22881.0008 21550.603 23105.6296 25438.2367 353211660 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 10483.4954 9721.8997 13027.1741 4915.4035 72759.1544 9811.8436 7026.9838 6702.4616 8375.9685 22114.7818 209871.6675 16983.7449 18939.7248 8019.847 6840.7301 6840.7301 11480.7297 17493.329 10435.6718 9551.4285 12915.9708 14543.8047 7268.4811 8452.6003 17805.073 7031.1997 16830.9715 10093.0627 15592.7679 10115.902 6745.078 11158.4891 12610.1664 20333.2265 345012521 tfda Organic Remediation Aromatics Chlorinated aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 54287.976 20331.7025 44629.4461 1650756.2858 29789.855 13258.7945 59738.7198 95486.925 29749.0558 43755.5514 111364.8687 49024.5024 1272355.4385 53995.8058 69832.4994 81244.5253 66542.8633 66542.8633 50196.0321 108660.6296 99591.3293 109735.9523 97606.4493 46828.7682 48868.0889 39726.2559 91517.8384 56176.3613 191226.172 69366.0673 81284.8104 347650.9489 56360.5607 111478.7431 178620.5044 240267.82 345864294 napa Nitrogen Dissimilatory N reduction NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 16454.4875 9111.3548 16076.7563 4651.2735 4630.6741 3015.911 4977.0994 8180.2555 3900.2413 96394.7909 6368.0688 6801.2523 4479.0254 4006.2858 4006.2858 3172.7104 12415.2584 7754.8618 5609.2012 8679.9004 11204.0936 4003.8361 6947.3305 8361.586 3764.5205 16493.0919 7502.9122 10217.4929 3864.233 5087.4492 16663.2283 3296.6388 19953.0035 323382198 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 27025.4684 5738.0301 6301.9258 13089.4301 12908.1739 28494.3122 37386.9205 7187.2494 27945.9187 12290.9352 240396.5275 12176.9386 55477.973 13349.4637 6750.5029 6750.5029 96796.1143 20545.6975 16357.4297 40539.3499 19969.7285 17932.0613 22382.2893 12031.2782 12444.5408 28540.6594 8937.8067 19035.5875 15792.3681 12965.8513 11143.9435 20211.415 18271.6929 9414.6915 308212935 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5935.2025 3140.7653 5476.556 2745.0362 3946.1865 3315.4582 1956225.3722 4464.2856 2453.6135 2453.6135 2966.2985 3855.6231 32183.5163 6228.8883 5691.1986 6059.7964 5063.0303 4202.42 160705536 protease_serine_fungi Carbon Cycling Carbon degradation protein Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 4615.6745 2172.4204 3685.6442 56642.1755 68418.6352 4434.2234 7649.1954 3276.5099 2992.0367 355525508 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 39561.0557 7570.7375 15740.0496 5140.209 23379.7911 9617.7414 7040.8693 18470.4945 6484.6059 150330.9135 22830.6462 8551.8992 42399.0391 9889.0925 9889.0925 17143.7713 20820.2506 13843.79 14940.6413 32506.8175 15639.3845 66847.9594 11691.194 12532.0905 19681.2692 22914.7926 11296.2172 25177.7729 6784.3443 56290.0989 11809.5047 11490.6506 28952.8749 98977961 arsc Metal Homeostasis Arsenic Detoxification Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 75419.6229 135652.8788 5980.4859 51161.233 35534.0412 35032.4602 27704.608 45351.0046 60909.666 148280.1382 42597.2126 805166.8173 105797.8638 74437.6538 91215.0044 43928.4471 43928.4471 25537.5034 61689.167 137744.2056 25680.4957 27342.2767 21689.6817 16168.0005 30377.7905 32035.3682 46047.0842 108084.918 47154.6466 36772.9097 37788.3403 33465.6065 50120.1655 16089.476 28214.0706 84517284 pgk Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 17059.6495 5996.9812 87479.4463 16778.3296 3232.3097 7071.9794 10645.6277 15626.9511 658519.9564 12497.2676 7525.3401 13387.8111 10850.041 10850.041 4041.7473 9085.0519 6830.4957 9044.9094 7541.1169 4612.9308 5564.3785 9776.2676 56253.0854 4840.4848 12068.1277 5790.9958 19748.2278 4510.1596 16646.8281 6994.4307 5118.9832 27074.0072 392952765 nitrilase Organic Remediation Aromatics Other aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 19416.2265 15175.3135 6344.3002 4159.3216 9374.7039 11422.4949 7169.3328 4421.9898 3466.7583 3466.7583 13897.9165 6861.6946 21793.1176 5954.0534 5235.082 6880.8363 34646.2931 8074.3474 12594.5309 9298.0249 6254.6044 6380.9407 5090.156 4390.1549 5199.8208 5078.1496 169793418 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29345.5832 27534.1498 12355.3527 13005.48 6558.8329 7958.7218 6279.8745 14521.9639 12742.4748 10240.5683 241446.4603 13970.0935 25401.0848 32558.4666 32619.6881 32619.6881 12551.7383 20628.3293 10739.3415 15348.5423 20931.5391 15495.0738 8385.3577 12682.6904 13301.652 10984.2391 9402.9766 35966.6221 31640.2102 9242.2602 17837.9793 17315.9476 7196.2609 22515.9305 387130280 tehb Metal Homeostasis Tellurium Detoxification Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 13388.1619 16690.9008 8884.7847 17624.8994 17482.8273 9778.3358 8624.5585 6854.4253 14866.2411 18579.8987 10406.5339 345670.5352 21757.5702 26598.253 11549.126 6317.1966 6317.1966 11896.6417 20843.012 15825.3924 16251.9483 17429.3746 22178.5091 6742.3879 6816.9763 19265.5745 6840.2259 27378.4287 18522.5873 20170.6006 7933.2861 9508.8626 23251.5911 7930.9486 22156.3419 226307333 gdh Nitrogen Ammonification NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 21824.757 5980.214 7968.7678 4932.631 6932.1855 6034.414 18937.8064 24214.687 8473.4151 40653.9977 4436.527 5914.4995 8591.8253 4495.7332 4495.7332 18249.0261 13790.3699 8975.5277 13215.5193 8170.7802 10628.4235 5736.26 7803.3124 20248.4789 35324.6559 23173.0909 11771.6814 13227.8959 19890.9811 10273.3001 366235.8473 99697.4393 18856.3751 90420018 PRK Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 214054.5801 13361.5715 129604.7091 1107199.3988 39551.9409 22892.0523 76760.9763 116958.0327 223872.8515 74433.1264 85087.1195 101823.9299 754206.616 68630.4935 84089.1818 249830.0671 103461.89 103461.89 35275.0628 97703.4245 57104.0552 40730.0626 143656.1656 73887.1742 82275.1192 61503.3323 58914.7874 83342.8367 218500.8123 67395.7231 88243.3534 40428.0048 97838.385 242530.517 49322.723 69068.4991 324031282 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 13133.5028 6862.3317 5884.0612 31431.6911 4534.8091 13864.3328 9738.1033 5040.0905 8367.749 4224.2715 163679.8259 9808.4073 8562.4996 4563.4019 5726.2862 5726.2862 6279.8403 11308.6129 21485.7223 12369.928 17903.5923 13369.332 3238.2499 6073.0466 10068.0944 5325.355 23117.2451 8026.5953 10434.6136 6169.8628 26170.4538 6560.7958 4161.2343 10223.0259 169855830 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 76805.8936 72959.1345 28208.6712 58962.0687 1208225.0863 19309.8681 13063.2505 87652.1428 24490.9824 126670.2105 172937.695 48800.5709 3251931.9313 207737.8296 230772.0992 204520.7904 57058.682 57058.682 93751.4814 83852.5072 58316.1399 90847.3658 26064.6898 43766.9359 30995.0442 40021.4024 81797.3007 63419.2551 337310.7517 71744.778 104598.3318 42735.4254 76804.8271 72321.6878 18607.9887 29455.2178 195537608 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 13513.8682 2679.6753 3818.6439 3250.3196 4372.8019 3223.063 6860.5988 6860.5988 4968.7784 4310.9606 6589.3194 2112.0093 3755.0712 12362.2191 1980.8534 2859.0273 13871.9024 6045.2645 163783580 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 16542.7134 14523.308 9996.8533 14107.4517 12010.8261 4067.1299 13598.9041 9721.2142 8186.3639 58996.1082 11645.5037 169898.4559 15666.9568 53411.2954 18982.9066 7618.4602 7618.4602 11250.9829 18824.396 13107.9639 16119.8557 22698.3658 30388.6315 9968.2137 22755.4649 16913.8923 8331.916 34125.8698 22920.4877 17542.3454 15358.1957 8215.4457 13580.4354 4450.8111 14511.9036 46307948 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18875.6748 13608.7636 28281.5104 5838.731 7159.3378 6699.5222 49191.919 7405.9253 6199.9599 34104.2877 3377.4889 3377.4889 5277.4088 6717.4461 8771.0183 26779.927 3150.5994 15939.3888 5347.1395 15970.0474 9249.8098 40018.5747 2974.3972 14162.0519 319789582 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 4391.4412 3690.3966 3497.6371 3497.6371 7946.9652 8059.6204 41284.6643 4724.0882 3455.4177 30605.4736 3848.3727 158437481 nifh Nitrogen Nitrogen fixation NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 23036.4087 4714.4623 9585.185 3403.646 10696.6055 5547.3242 5700.4752 5289.1705 115962.7647 8941.7569 5794.4088 7283.625 3974.4512 3974.4512 5010.5884 9411.0451 7490.378 14286.5397 5339.8464 9163.6986 3247.2004 3543.1715 8008.3077 3372.1301 11424.5596 7771.0819 15222.8378 3779.579 6985.3853 4666.8534 4291.5022 295898378 linb Organic Remediation Pesticides related compound NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 25966.933 43889.3273 45752.2488 6474.8186 27534.3167 6767.3261 5155.1548 9325.8819 9130.3556 16608.0405 614142.7053 160748.0636 242782.8575 32973.2242 233166.1604 64229.6879 22194.8077 22194.8077 20000.0647 23974.5947 14952.4649 9907.0183 22382.4476 11809.1172 21131.8449 22626.3566 40055.4543 28170.4671 46177.6333 19456.47 48296.3999 8998.1139 32147.4843 28420.0676 15569.1848 24806.2367 171677977 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 11742.9723 43251.7135 3866.6599 5733.964 3087.2338 133867.0282 4846.9585 11655.818 6298.9212 6513.2453 5845.5882 9285.0486 25312.0549 5732.26 2941.5549 3028.5727 77546458 terc Metal Homeostasis Tellurium Detoxification Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 11324.4424 5821.4082 10981.4775 7875.72 6463.6902 5047.7275 10513.6142 9520.5022 10175.3661 304780.336 10694.8266 7842.0029 8341.6024 3378.64 3378.64 6830.8345 16750.5517 10441.5236 11809.0468 35008.8936 30312.8768 7550.3964 10667.0738 15255.2293 7818.4526 29921.9524 9508.3561 12544.8457 6119.0782 10246.5247 11771.7526 7289.7617 15293.933 317046977 alginase Carbon Cycling Carbon degradation Alginate Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 23866.9921 6547.4412 16989.2904 11837.5564 15787.1609 19677.7506 21713.6524 18747.6597 17523.0345 13778.6406 299221.9006 49590.1772 35080.2607 29852.945 345770.6986 345770.6986 15604.8924 31600.9415 13136.1712 141689.6501 26175.0923 16861.0231 9846.6364 13736.5341 18267.7508 45383.2505 70757.8174 12452.5925 17830.0585 14698.4878 17691.5226 18814.6959 15466.5048 46425.7335 84389695 chrr Metal Homeostasis Chromium Detoxification Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 27016.9144 18197.4241 269293.3038 21507.019 167994.0146 33219.4822 17861.9288 19163.1266 39213.9145 26164.7452 281098.8044 364511.552 24709.3329 34716.3772 84720.175 84720.175 10410.9896 56801.0024 34140.5394 93781.5238 21082.2019 51746.4346 10066.3968 18579.0541 21102.9231 53499.202 48521.1694 27496.703 35545.9395 34685.1771 21709.7642 37042.4217 28880.4528 148388.9779 226317259 alkk Organic Remediation Others NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 11828.5057 7808.3486 3879.9323 2842.1921 4193.4335 3802.5579 13470.6273 2914.4371 134750.9673 5240.8931 5857.1975 5009.5644 5009.5644 3968.9091 7995.3814 6434.8756 8893.1994 20527.9239 13244.9194 5916.0313 3465.6149 6720.7927 6683.6009 15110.9456 12542.5613 8759.8842 6278.9356 5312.1994 5496.4555 5045.4234 28733.514 225351714 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 241633.6346 20919.5661 229678.5007 127674.772 430515.2075 45299.3859 58118.2523 76148.5304 322172.4598 64426.1307 114143.6478 64774.2263 2356093.1792 694036.9937 143607.439 97312.2582 79469.3947 79469.3947 60498.5446 129352.4351 83884.7436 237767.3319 148242.1915 193997.5712 62906.0308 56333.0257 119272.6009 77170.7249 450777.6087 180544.1993 130179.5869 38384.7582 65756.0848 99930.2616 44046.2771 71231.2142 326947321 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 5571.5301 8741.5884 4469.8228 5391.4249 13997.0461 2352.7645 3288.8115 54409.2544 4156.5545 506891.8576 8611.0314 24401.2603 11105.4737 4955.8276 4955.8276 7809.5465 10823.5987 6141.2115 8646.6606 1033261.7905 4582.763 3736.8384 7075.7243 19336.8289 8441.8267 15000.857 5764.9503 10196.0783 7037.7104 7370.4427 12176.8847 5079.8892 8814.417 358244528 cysJ Sulfur Reduction NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 4433.5456 6611.0027 3587.228 3142.4988 3913.4941 4701.9408 14535.8113 4446.7282 172100.9892 6697.6974 8846.2972 3742.5138 3742.5138 5526.2235 10998.1535 7708.6979 8757.0702 7318.7494 7935.3126 3554.3473 4162.0423 6892.6651 4608.9926 16314.0201 10010.7995 10254.9049 5292.6256 54860.8654 6677.5966 4504.5658 9154.4761 206579297 cysI Sulfur Other NA Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8046.0714 7844.8043 3418.196 4075.5929 3766.2058 6782.0219 9819.3881 2886.819 115649.053 8639.758 8852.7912 6023.4799 3933.8631 3933.8631 4401.9482 12648.774 13666.4813 7052.3446 8499.3474 7868.5761 3249.3157 6308.7451 12077.7281 3559.474 18995.6518 10686.1718 15235.2004 3204.4448 6617.0919 7207.3883 4785.0481 9300.7085 395237920 chnb Organic Remediation Other Hydrocarbons NA Turicella otitidis ATCC 51513 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 11600.9823 15064.0101 35092.594 7719.4342 14794.6063 15059.4734 5500.0077 14041.1116 13040.3106 7698.4537 241221.2063 17592.8559 16505.4451 13639.6352 8858.536 8858.536 11828.6861 22425.358 16828.7927 29047.4757 12375.5902 15957.6034 6288.3195 6563.4677 34408.1422 9602.8482 46999.0311 23729.0941 28199.8704 9761.0894 13391.122 9390.3983 7150.703 15066.3923 117989599 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 20887.8851 4806.3459 8731.8935 14986.8897 5324.2475 18458.4332 48312.5928 26667.1041 25567.9668 26584.9246 71400.1063 661498.089 29859.403 77624.5678 109656.7768 17909.6846 17909.6846 10031.3471 51755.9491 12270.988 90426.3876 50369.4392 19022.9412 25038.7107 22257.8521 30119.2959 22973.9757 61395.4223 27817.4727 28820.905 21803.0696 27549.6173 20124.6795 17230.9337 126955.5684 258591880 arsc Metal Homeostasis Arsenic Detoxification Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 18344.4579 6883.8716 23123.6151 6954.8658 18459.2031 6397.7332 7832.8286 22658.0931 8493.25 205046.6542 13086.8216 26460.2965 9773.2841 6048.1093 6048.1093 10194.2981 19807.2644 10031.4092 14601.9768 14204.7618 15721.6937 8354.3425 5815.964 12167.8681 6385.2469 18014.4066 6881.0941 19225.0732 27375.799 63204.5898 12347.0939 6822.3122 17200.0064 395762917 nitro Organic Remediation Others NA Janthinobacterium sp. PAMC 25724 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 8236.3383 4795.5637 10036.7222 7423.1858 14970.9586 39940.9378 10810.4807 8516.1446 5120.3735 148345.9351 9764.7223 8811.1129 20805.7216 9704.7323 9704.7323 4251.6195 19396.3542 4888.4629 18895.0765 12571.3962 11807.651 8994.9394 8957.006 5491.8137 8342.5902 117789.121 6129.0272 12177.8108 6093.9452 11444.7568 15270.9422 15679.8793 14025.0702 4588030 merb Metal Homeostasis Mercury Detoxification Bacillus sp. RC607 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9141.0919 9773.8367 7237.3662 3662.4166 5206.816 4758.0326 7059.8676 9180.948 5240.5097 150456.5302 9003.1969 14688.896 8058.1203 5457.8843 5457.8843 8553.9789 13834.133 8349.092 10367.3133 11709.8849 14246.2098 4336.1612 6739.4627 11220.9526 4376.1118 14201.3156 4133.3209 10674.0671 4039.5783 5767.9564 9030.2357 5316.0497 16560.1182 157369930 dmsa Organic Remediation Others NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 5901.8204 12528.3538 8983.703 3430.0342 69853.1548 4573.3696 8134.7577 8835.7983 4229.4853 4476.7334 2819.0478 2867.1732 8548.3303 7749.1504 13721.0155 7582.5725 8083.9178 2504.2224 6279.5749 2882.5365 288925285 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 5213.555 2392.8811 2842.4298 2971.8835 8659.7333 9498.0971 5663.5191 219451.1175 9813.861 20278.3119 3884.54985 3884.54985 19468.8587 12344.1283 7351.5847 8669.8341 36006.7979 7324.9075 21906.6506 4285.4569 11230.7017 3381.035 33445.7303 5995.8968 8490.1216 5317.0063 8798.2227 6229.3038 6553.1096 15831.6554 320547119 amyA Carbon Cycling Carbon degradation Starch Streptococcus equinus ATCC 9812 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 11806.8901 17277.5527 9069.305 14812.8937 6350.1946 12225.7313 19053.1508 21520.5677 13073.4071 10366.1685 302003.7691 29249.9873 35726.692 19932.3538 21885.9798 21885.9798 5062.1107 25229.1788 12567.7975 8850.1489 17245.3046 7571.6127 4680.7137 25997.7003 21301.58 14624.197 24349.2027 11963.0654 17204.4942 6428.8705 8940.0012 7773.0895 13583.1983 22497.9985 114707623 terc Metal Homeostasis Tellurium Detoxification Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 53952.9273 24448.4543 4922.4763 14626.2052 7861.6989 33626.1087 18474.0969 22145.1895 44249.0999 21940.3558 462684.2862 17021.7373 20103.6938 29409.0452 59777.5062 59777.5062 15104.3435 58359.1263 15437.7749 82130.8582 84375.559 24491.6658 32284.0582 26119.01 15318.1599 28220.9873 62090.433 43540.9743 58878.061 9266.2589 30624.4336 36137.1289 26183.5433 23013.7554 75674788 cysJ Sulfur Reduction NA Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 135231.2453 83960.0524 133117.2354 216830.1517 75186.009 19188.0921 117199.8079 113798.361 109250.8151 100012.5219 85510.0076 105272.1409 3981095.4331 178003.5373 177210.4867 184806.6673 75487.0176 75487.0176 37962.1605 151926.1761 104413.2653 83013.1321 102072.0126 57635.6106 97272.8988 83172.4148 138347.1883 164181.1953 194975.7837 65501.8922 80594.4543 81479.0425 114941.0539 105225.9449 60080.343 170381.7843 296164898 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 66963.1021 19802.7376 11814.3231 31862.9102 6821.1375 49711.0508 15371.4543 48829.8757 28379.9583 82854.7575 35670.3327 304002.1642 26876.7065 39025.6216 78869.1562 41042.4718 41042.4718 20633.0144 35138.5077 23620.6027 82068.2579 63090.5069 25302.2526 21592.5432 28724.8052 60776.3362 53168.0395 78256.0446 33433.0012 42718.2436 83666.1259 30667.4753 32938.9909 18980.162 69595.1596 170934106 adhC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 11711.8694 9215.0731 9583.3255 7864.1798 12344.0615 7834.5464 5233.9026 11162.2626 16139.9969 5430.4653 214092.7093 15683.0431 14545.9265 6298.0121 19151.549 19151.549 9835.3958 20234.3107 12597.8622 17673.0093 16133.6576 16368.55 8152.1568 6793.4077 18126.9468 7953.8103 27017.2011 16003.7608 14643.0126 36478.8111 8372.5261 11684.6943 7425.1633 22901.4637 194591923 arra Metal Homeostasis Arsenic Detoxification Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 54505.7047 5470.9112 10220.8118 22145.5272 10611.3509 8447.256 694920.5097 6481.5766 8327.0436 15996.1902 20902.3103 145232.8026 10622.1962 13875.648 19125.9661 13703.6753 13703.6753 12629.177 16867.5641 14726.5568 16077.5572 19215.0907 11227.8107 10725.7174 8358.0188 16046.3328 7453.6477 23091.0843 14950.6139 40901.9791 10862.1228 13561.7495 14898.0459 9059.3255 10194.1113 397162916 nfsb_2 Organic Remediation Aromatics Nitoaromatics Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 22695.2684 5511.8791 8085.4581 24244.5806 7903.8314 8338.7302 15179.4954 6421.5005 13582.0888 11204.4568 28503.9558 282155.7294 16334.2015 13180.7115 14668.6391 53931.7948 53931.7948 14523.9905 19823.981 39867.9057 9018.2585 16106.5795 13556.7617 5343.1005 10698.5053 25090.6718 22557.4587 39649.4779 11000.0723 30917.0407 8318.1858 8666.4859 13613.0971 33412.5736 31209.1961 84392934 mer Metal Homeostasis Mercury Detoxification Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 7223.7313 2771.7517 3004.3592 5674.6773 6781.2645 3488.6409 6964.2868 9774.8713 2692.0612 2692.0612 2505.3457 3944.377 6488.2278 12602.7087 2244.5119 5232.069 14102.4919 3329.5773 3669.9532 5156.4398 302541395 cmci Organic Remediation Aromatics Other aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 20016.15 55031.4963 10166.1349 31477.7651 18077.4542 7777.6728 9055.1494 2074.5025 10287.4566 25586.5526 15405.4754 310313.0915 16418.5013 100969.8862 12579.917 8422.1449 8422.1449 6830.744 24691.0633 22203.6379 10894.3149 28656.2962 8732.7357 4475.8887 9713.842 21053.6229 7645.8547 28284.4581 16617.276 20487.5042 10363.6477 17246.199 12045.7082 73960.3612 9162.6959 151336975 endochitinase Carbon Cycling Carbon degradation Chitin Thermoascus aurantiacus var. levisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus;species:Thermoascus aurantiacus; 12437.7921 5665.57 7276.0978 12882.5199 27985.3251 6956.129 8257.1908 18429.3285 8168.3934 103963.9702 8077.5204 7413.327 11427.8983 13873.0278 13873.0278 7098.0282 24092.8354 10415.5118 8704.9562 11867.7578 8621.5077 3558.3149 5198.7811 13620.3335 6363.1307 22956.3131 13254.0395 12476.8058 4293.5825 8631.0199 7628.3412 34361.3839 18032.0907 294340646 fccab Sulfur Sulfide Oxidation NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 6294.0664 80905.1016 10590.6159 6844.0183 19879.0652 6792.4733 4558.3354 7199.5147 28289.9879 58026.1896 6958.1918 24979.1162 5590.5264 5286.1749 5286.1749 3729.4914 32659.7577 9807.932 22080.2803 14245.5371 25197.1353 4948.8755 10058.9748 22035.7284 11728.7566 5510.655 10726.4026 8529.4386 6186.7598 12701.573 5991.4211 15161.1017 2627157 bphF1 Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 321479.6621 35350.636 31980.9528 39227.417 48700.4765 8050.782 656753.1468 42592.585 82114.4524 85292.5876 112759.0949 1440723.2318 101584.011 90174.1737 447393.7268 332842.6425 332842.6425 379211.7444 175462.9147 120437.0457 85509.4244 468919.3846 33282.0314 110214.6259 121007.8977 405877.5322 125120.0736 338752.3309 184134.4143 322438.7371 125191.8821 128644.2151 176923.9362 146183.5529 159656.1299 256648262 nfsb_2 Organic Remediation Aromatics Nitoaromatics Acetobacter pasteurianus IFO 3283-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 13238.1657 6516.7343 26389.257 10610.3916 7179.211 4740.0677 11610.6181 11427.753 5442.7783 296566.6401 18470.7787 9451.1972 5041.564 7298.0637 7298.0637 7505.0625 17223.2445 11334.2054 21048.296 23717.0522 14874.4684 6322.4601 15231.5597 5437.4645 23158.6455 8915.7359 14834.2116 5718.7868 9130.5711 8635.3939 5982.9101 17923.0362 355539702 arsc Metal Homeostasis Arsenic Detoxification Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 7926.8488 8117.3369 31394.4663 5586.9588 3466.3413 6916.0843 5507.1982 3421.8938 928276.2813 5002.9247 12368.1877 5231.7079 5047.0624 5047.0624 4249.5234 9733.597 10253.3962 7663.3967 6264.3339 2844.1039 11759.4813 3128.6047 11815.8094 11165.8876 10827.9859 5834.5794 4376.0505 3798.0809 378551376 dmdA Sulfur DMSP degradation NA Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 34527.364 31675.699 96561.4854 26936.6067 74585.688 13629.2435 20362.0252 33066.5786 20794.0788 18106.4766 27148.9993 28742.7674 673351.443 42085.2361 28646.7624 71087.9203 20359.8248 20359.8248 12898.2476 44486.9765 19473.7345 19142.3686 20152.9817 15566.4075 27504.48 22070.6677 72015.3792 26325.269 51261.5412 19421.0133 46708.5161 20336.3593 24037.8597 31219.1215 18255.553 21214.8156 373952810 xylanase Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 27548.2328 3346.4448 5611.8944 3081.7516 4757.955 6323.6215 3410.0075 112499.8383 5404.8901 5217.3243 2425.2508 2425.2508 7495.5746 12573.3638 6516.8104 7166.8007 10028.1533 5864.3334 3474.5389 3606.5996 7567.2243 2344.1704 11233.0129 7482.9522 8233.0814 5275.4768 4863.5373 7754.612 2948.7059 6961.3848 219945071 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 21120.8673 179337.7021 9873.8959 11595.9926 6552.0386 6588.2349 8689.5717 4370.4815 8873.698 14979.7083 19051.3978 176593.7859 48294.5816 16997.3816 15420.6442 12824.8794 12824.8794 7546.5422 35842.9591 12886.501 8558.9229 38469.9897 27451.2813 277484.1317 9394.7789 20953.1017 23803.1752 146611.6459 26212.0065 20891.9608 6040.8956 26578.5648 27375.1364 15101.4136 131554.454 308227111 pgk Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 7540.5618 62672.2215 5576.6836 2477.1987 3832.707 3067.9178 9742.8441 2616.8518 9476.8994 4823.2657 4823.2657 9016.1635 3351.8775 47025.0929 6030.4929 3949.1864 2751.491 5092.2396 2202.9115 10463.6974 4838.1151 10139.7872 4049.1998 22033.4781 4879.0911 7498.3452 325109940 tehb Metal Homeostasis Tellurium Detoxification Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 63151.1365 4638.2226 4724.8139 10038.0434 4561.9031 3215.3365 5918.0914 7473.995 64268.3247 31354.583 31354.583 3616.3789 22374.8391 3723.9538 24843.1433 29316.4182 5394.3745 5578.5854 3519.1297 8258.4079 8377.4198 17705.8295 8512.465 5429.3089 17051.2956 13359.0535 8724.3378 2775.1639 158305677 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 6166.6315 4187.1391 6245.7487 4033.1614 5539.4427 5755.0101 9891.4262 2613.8809 80293.106 6670.6151 4142.63 2205.9169 2205.9169 5440.5408 8371.4614 7020.7861 10931.5239 11195.4439 10666.4133 3618.4865 4963.7426 8257.7994 2887.4871 11342.4086 6057.4398 9483.0228 3260.2533 9256.361 129476.1036 4598.7701 7181.7242 83953732 alkk Organic Remediation Others NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 17351.7926 19963.2374 15921.44 11392.6729 10279.6879 9753.6036 7901.2955 5390.365 9502.7013 10589.5878 5204.4842 235711.3276 12200.8806 9779.2563 7585.4771 6806.956 6806.956 9321.3955 22159.6156 11646.8391 8876.9183 11441.8936 18165.7051 8146.5978 5934.6443 14255.2665 12433.6535 18943.4847 12450.3711 13869.1567 7361.6945 10178.7401 8558.4354 7345.4872 35513.3674 18376631 ben_bcla virulence NA NA Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 12588.8694 14713.6755 9110.6164 11659.7893 42461.5602 37525.5808 7813.2684 12519.4639 12201.7489 12081.4785 48336.4446 12101.0366 246126.3179 41743.7121 29297.8568 31271.6708 22719.4691 22719.4691 39549.1383 34197.87 42550.1317 24586.4587 11801.9294 18886.1252 9505.5543 10440.8351 22192.1889 18558.256 32485.1666 25647.3515 149628.1007 22718.5089 33785.0766 22349.2954 14592.4295 110047.3901 288351281 ben_bcla virulence NA NA Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 22824.1242 7115.3656 13787.4315 18007.2212 17482.1687 13481.8298 7382.6738 14745.2483 27364.4107 9991.3381 386434.9603 21051.1466 21250.512 230252.0422 20136.0723 20136.0723 10101.0715 28013.579 19379.7407 18170.6785 22859.9691 13151.0704 9758.8681 8538.9684 24340.7683 10333.0155 58460.9627 30354.5558 39679.1699 10011.9936 13626.7094 24809.3833 9471.2615 23487.9755 168805058 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas sp. WJ68 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 6479.7775 6976.9124 47240.7014 8840.8044 4960.4899 4506.137 3356.0246 7036.2145 5024.2226 3597.0432 86141.3706 5494.1843 4481.8863 4217.6911 2889.3691 2889.3691 5908.0258 9633.851 7621.9713 9514.943 7111.8307 8609.9348 3802.5665 4979.3623 9951.6397 3287.7132 18232.7819 9862.2142 10020.6944 4850.1266 5510.4922 6231.5506 3954.0401 8580.6253 374330771 dehh109 Organic Remediation Chlorinated solvents NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 10158.5502 16225.7165 7882.6867 12138.6737 18452.5033 4987.6705 25039.2575 22535.0002 115755.1447 24322.1047 8141.6736 24752.4604 11486.7548 11486.7548 4522.1746 23500.3796 13555.0484 17527.4426 12602.0445 8746.9288 9647.0389 12443.2012 11780.6216 31968.8773 19175.1447 17276.4211 14362.4748 7142.44 16273.1461 9635.1187 5653.2134 13229.483 118472466 tfth Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 38992.7506 97563.4739 8031.133 22774.7057 11049.6422 8014.66735 23528.084 10204.0815 27391.1071 1026138.1153 11739.7634 31145.1447 15967.9269 29467.2016 29467.2016 27331.0227 23417.3402 26974.9442 46145.7491 301318948 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 26009.8486 33196.5916 17310.7717 25769.1689 22121.4763 6747.9683 15450.2356 9606.2184 6362.4092 14477.3835 21607.103 10633.5182 496971.8344 24343.1583 23235.057 21459.6341 14041.85 14041.85 16422.5414 37503.5012 21405.2444 31979.066 39798.4091 42287.9207 14530.1315 11295.7136 30423.4956 9420.4842 69116.4219 26375.1562 32365.5736 8742.263 17186.4847 17629.5023 16065.2744 24396.6998 364566877 ppx Phosphorus Polyphosphate degradation NA Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 38903.3008 13587.2199 834227.3367 59618.3409 19970.4743 12898.5946 18379.9533 190105.4751 11189.5651 54088.4768 24624.4265 20264.4421 711518.9426 26924.9881 31915.1095 29797.5441 52562.8047 52562.8047 15522.1068 31172.9431 24418.3761 45035.5462 126516.8903 42182.3745 20349.9492 10355.25 27089.8776 14899.7465 33918.5338 16518.0025 41441.3739 10281.6772 12048.4583 16759.4941 11897.1394 21511.4256 242218117 Dyp Organic Remediation halogenated compounds NA Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 14406.718 9698.1019 10329.9348 9681.0201 10746.4736 8804.1306 6227.2999 11697.2419 11706.6264 5541.1351 243965.2158 18622.8977 16322.0989 6902.1141 6560.6515 6560.6515 6950.1704 11408.9705 12480.4602 13403.2369 17157.2648 12886.0295 6879.0118 4006.1399 15607.1071 5394.7306 24351.0196 13147.7317 13966.5101 6435.6393 7246.8682 9549.1996 8140.3265 22752.4731 301795973 cysI Sulfur Other NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4641.9961 4358.1946 4742.1394 6403.1391 4022.9426 3057.2092 4930.4553 11080.9436 9476.7451 71417.3095 11385.3621 9772.4227 4360.4517 26596.8139 26596.8139 14769.9665 5111.9469 19573.608 15452.3971 23158.3575 2277.0907 5296.0504 555167.7809 5028.4587 18530.1825 10186.552 8060.1127 2701.861 4482.9576 5786.2334 6448.4127 145257729 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 30475.0075 13043.6486 26199.5846 12656.9429 17280.9364 11758.3984 14875.7644 19045.2594 21024.4779 12063.58 425942.1016 21730.2637 34074.3855 13999.7428 8885.5675 8885.5675 12573.2071 19489.4325 16787.7357 25878.9993 22505.4101 19203.5545 9644.8365 10434.1461 22087.8493 10045.4616 31602.8728 7899.9206 23737.7384 8967.5025 11477.1244 12547.5943 9501.306 27013.3376 116671967 atzb Organic Remediation Herbicides related compound NA Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6971.1732 8731.8502 3538.1407 4828.6861 2996.2218 7883.8788 9436.0104 4293.059 111668.2396 11522.314 7659.3259 5809.0029 13690.1625 13690.1625 6459.9661 9177.1197 6089.955 6556.6274 13858.0341 4630.2702 2781.873 6035.4625 47916.7471 3314.4798 12927.7318 9478.87 10375.076 3777.4789 5967.6528 8535.9934 2453.5352 5743.399 302411782 badh Organic Remediation Aromatics Other aromatics Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 6933.4754 10228.9412 4422.3191 12959.2992 10804.3441 4601.086 14183.8726 9780.1059 4606.6191 124838.1549 11571.9666 6573.7206 6140.6518 3226.3308 3226.3308 5142.6413 14872.8725 11182.452 8814.4101 13353.386 9923.2107 4318.8597 6081.4967 9151.6316 7408.6581 18074.5739 6974.5935 13524.6585 4737.3263 6780.9673 6683.4819 4584.4926 12253.1868 78223338 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 10428.7108 10875.8878 8824.7184 9552.5962 122768.468 9181.6702 19867.9242 12851.6996 41719.7389 42179.4772 176046.9751 43719.6504 9900.6817 26362.3817 22420.0046 22420.0046 52013.2037 52880.4123 9096.8061 7657.4273 18130.48 11205.7412 7999.9478 9962.5189 9465.1463 21766.5798 5553.2121 14761.6709 18230.7639 9285.0676 9715.2234 14217.1864 15851.0873 32102.3393 169867340 Dyp Organic Remediation halogenated compounds NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7709.4102 658856.3216 3468.3554 2722.8765 7575.2252 4948.1467 137849.5515 4806.695 125086.5265 7312.3409 3762.278 10125.8978 7876.3251 4440.7403 8240.977 5702.3039 2848.7343 3252.6854 7697.8522 4023.652 10143.9554 152509.1146 14037.7079 2435.506 7328.1834 7699.0332 3525.1759 5377.0651 336068507 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 6913.1408 8120.7038 5643.291 10386.843 10241.9175 13019.7347 10999.3245 5434.6932 117655.1252 6064.6381 13093.4264 10533.4379 5498.8389 5498.8389 6783.1906 15116.5708 10269.2458 6903.851 6224.0877 53064.3571 5348.5126 9198.0035 20161.6543 5220.6203 31071.2728 12122.774 13909.8856 9549.8436 7837.1921 6394.724 3853.3956 20393.283 164455582 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11297.2359 6332.4747 4985.0348 8939.0015 5114.057 18765.3687 7942.5384 3298.1528 9700.2047 32785.6789 11347.7461 114907.7467 5330.9796 12436.2834 12078.7959 23315.7747 23315.7747 9686.2648 12887.2936 5488.7002 6771.1039 22667.9007 7976.4715 5256.6334 8110.272 7561.1508 11824.5233 13179.487 11202.2235 31270.4038 2543.6575 7079.8392 11495.4158 4585.6306 5493.0307 115518635 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9166.3115 2812.1093 4072.2779 9062.887 14511.4122 85646.8155 6232.7032 10573.8052 2496.1566 12470.9608 8349.2807 5844.1965 4790.4301 4336.6077 3377.2518 3649.5962 30868.4713 317969559 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6356.294 4172.7932 13478.1926 9706.523 6998.1179 3666.133 6522.9455 5326.2552 2771.372 155304.3722 5504.8875 7757.4912 42361.068 2412.9241 2412.9241 6274.6144 11340.4064 8581.366 10360.2693 7943.5814 13107.2497 3398.6651 4093.6482 11829.616 3951.1132 14890.3223 5834.356 10852.3974 4156.8487 4549.5997 7903.8741 4842.4415 10445.1747 363987042 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Jonquetella anthropi DSM 22815 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 19241.6723 14563.8767 36993.8589 20018.2051 11080.0619 41991.7977 44543.667 13428.748 17537.2354 20138.1396 27998.8492 433671.2715 27142.6676 21238.0644 14451.5706 15098.6943 15098.6943 14032.1149 37077.24 18155.8267 25241.3255 23088.6068 67446.5184 10464.9299 9285.0139 21124.5253 16758.882 42156.1108 18043.5181 25961.7086 12468.4357 14882.3454 16861.4313 17063.5122 27300.8463 347368279 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 170405.7611 10618.5966 80718.1074 96877.2992 181784.8523 34994.801 206653.6849 67631.8509 51752.9262 67543.343 65827.1713 77823.1961 870766.3538 102912.1407 67842.8673 73831.317 42021.6377 42021.6377 68474.1963 92536.923 43154.1769 82613.6927 143101.6538 49773.495 83478.2496 22169.0164 63478.8177 74130.8185 145355.6969 53331.9292 86960.5465 31489.494 65156.5205 57797.3276 45036.1452 81967.3188 237808447 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 9644.5139 192649.2478 8360.0561 5359.5732 13647.4117 4186.9019 5298.112 3603.6054 617814.5767 4916.0823 54237.0427 11011.325 5044.4276 5044.4276 6806.4416 11513.2113 5117.8983 4795.1847 10449.458 5822.5583 5304.753 7075.0976 9238.0716 6752.3854 13167.6963 7295.5353 12663.2316 2938.4486 6214.4776 6711.9625 8400.5191 7359.5002 42494422 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 26311.7445 9361.0191 6263.9847 7560.8879 11549.6638 7404.6274 10824.3432 27141.2524 6680.6906 145879.3829 8512.8689 12551.4538 11559.4249 17331.6888 17331.6888 7520.4801 20678.2382 16312.8208 17542.8814 10609.0276 13036.741 18400.3833 11575.4706 13685.1884 12620.7773 24595.6737 32375.948 18181.666 24060.2292 32144.7091 17934.1318 5191.1301 8351.9806 333371551 cda Carbon Cycling Carbon degradation Starch Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 205175.2918 11121.755 112880.5176 76793.8749 754943.225 85215.2165 99470.668 84341.4031 76064.9566 86717.8022 241720.3807 91044.0288 2734013.739 120164.2942 273507.3313 150274.5875 102676.6087 102676.6087 95024.2536 189318.5227 116367.4298 86004.9576 157211.9281 110625.7366 61708.245 65610.4825 115838.6562 63739.3033 316709.1333 201121.592 181603.2092 69223.2611 111778.9783 105411.1515 116718.0656 213965.442 116090313 aoxb Metal Homeostasis Arsenic Detoxification Bosea sp. WAO superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 5763.3027 16135.7137 6300.0569 4244.7322 2486.0327 3955.8063 5028.608 6925.962 90943.2355 6285.3662 6323.3433 2990.8987 2990.8987 10404.7159 6970.7063 17836.0068 710293.2448 3098.8016 3708.8956 2618.9652 11160.8449 8009.4688 8643.1824 2732.5408 4512.3032 5198.5506 2577.6639 241885234 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacter brockii subsp. finnii Ako-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter brockii; 6797.0096 1522452.3021 404567.617 4694.1411 131877.365 45386225 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 20267.031 28015.4955 126991.9384 31117.2672 5806.4195 218589.1719 16793.5967 11132.1687 20085.2445 15952.1166 22840.1918 1197249.5181 25002.4365 20976.7268 23513.9181 29943.1596 29943.1596 9931.1937 32800.9921 13044.2175 19664.7002 18901.6221 12659.5481 7506.9155 15445.3163 16255.5787 31212.5055 93330.6693 23392.7587 51253.2508 12167.1992 23555.4286 10750.8519 67123.7008 45028.7469 220922349 catb Organic Remediation Aromatics BTEX and related aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 12562.219 21142.3791 4991.1972 39005.0162 14804.4847 11977.9333 37773.0346 5327.9506 16081.9715 9010.4321 13819.1509 297182.6004 38960.6181 60398.8932 12724.574 8846.6157 8846.6157 4880.4506 20687.3496 13213.4438 8206.9052 11467.4472 19492.1999 4149.7408 13231.5815 14045.361 28789.4298 70242.8069 20416.0387 29812.0615 7306.8 17344.0378 23304.7141 11841.9672 21684.3736 374368450 catechol Organic Remediation Aromatics Other aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 32554.5347 33183.914 7806.7342 18178.7192 5447.2422 25573.862 16658.2653 10505.4842 14543.7561 18567.3498 8464.9944 234741.3382 11229.4184 16677.4367 290175.9471 10855.1248 10855.1248 15089.1567 22506.9445 16704.0531 14880.5316 29235.669 22242.1244 14398.4794 11480.3909 18722.0933 22508.161 47853.9952 18733.5345 19215.3995 12439.9299 14516.98 19844.5866 11939.5542 14979.7337 156976058 pula Carbon Cycling Carbon degradation Starch Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 15201.2255 86722.5184 17591.0428 42173.9372 10679.3499 12514.2327 15882.2427 13350.934 15089.7803 468917.8912 19189.0342 16643.0257 32800.8978 22688.6069 22688.6069 12259.7489 24383.94 14092.3722 37151.7656 68099.1156 11382.3512 9397.1889 9810.0196 28089.8088 11438.7054 42146.2961 25019.8411 21788.9964 12512.0229 17038.3545 11997.1967 23383.4856 58725.6981 221213050 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 214800.5384 37182.9894 148750.8205 117598.3013 126203.3835 85222.5919 115399.8157 146164.9103 83337.0781 139960.7674 121745.8822 91122.9294 2432813.2965 129851.0221 143529.2794 210925.7312 176168.7857 176168.7857 65440.8861 166391.2969 72336.0909 492807.041 175836.7897 147033.624 83141.8671 75058.0199 381061.6133 122834.0392 797746.3157 170948.3377 193375.2523 83627.4248 259135.2023 97709.8676 87170.1567 261365.0357 188583265 arsc Metal Homeostasis Arsenic Detoxification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 25351.6061 48365.0842 47360.5108 10544.4165 37630.6684 9707.3938 9571.6074 6888.2875 15683.6807 32248.0491 22660.2087 23267.7752 455068.6757 16728.8024 19930.2984 51171.1967 17681.5279 17681.5279 44560.3971 30401.054 12900.4812 373686.3955 20843.1842 16361.8173 17870.0058 12617.2426 30781.0018 8320.273 29418.2136 20901.3605 158832.1096 23120.6998 17072.918 20122.427 23500.4224 33668.1766 311741968 alkb Organic Remediation Other Hydrocarbons NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 9376.029 8608.4349 34630.7965 12168.6784 86793.738 16823.7074 19021.1297 15987.3193 20654.5578 13064.736 278566.9664 12124.2498 14324.8743 15355.3985 8507.4175 8507.4175 6938.1421 24449.3838 10322.8666 27733.3497 17153.4282 10888.8591 10622.3432 12200.1614 26633.1757 10434.786 36206.1161 27785.2762 17455.7127 11107.6162 18975.5778 10457.8372 9302.1387 12010.4872 384147875 merb Metal Homeostasis Mercury Detoxification Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 96948.6001 12613.4562 8917.4962 13726.3858 15537.3361 6209.4089 61143.5988 20689.406 12822.523 20931.6031 18820.4203 268669.9731 9209.6612 20731.6189 31727.4105 39445.7884 39445.7884 17067.4895 57730.198 11162.2817 17843.2921 16500.8356 4940.4536 9061.4299 25045.9718 22612.4561 20101.6467 45542.213 17476.2164 18925.2821 5977.5048 12689.6845 27157.2628 21947.5273 14213.726 162448335 pcpb Organic Remediation Herbicides related compound NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 12070.7709 14298.1514 3170.5301 7322.812 5145.6297 6981.674 6008.0274 8077.2048 100261.858 9074.5136 47269.8249 8084.6304 24802.7726 24802.7726 5255.5011 65874.0714 5206.7994 4559.1107 30842.5579 3249.3306 10810.9537 9037.0071 6602.4725 11249.7239 7555.7813 10293.0967 3950.7666 4740.7053 7346.7435 3987.9836 5166.2335 378822183 tktA Carbon Cycling Carbon fixation Calvin cycle Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 49760.9748 21530.9927 21817.7518 16846.2564 9598.7642 14686.7878 28183.6593 36291.8042 36260.9716 29562.0745 12369.0367 507893.9622 35407.5808 48650.0265 43978.5834 21710.9616 21710.9616 19260.612 24779.0942 31724.2968 28321.0483 33044.6334 19807.6194 10966.1094 18555.0796 20329.414 11750.8566 42014.9178 27213.8728 28213.8352 11113.6984 21347.7781 20569.4932 11670.2137 22590.3998 142850418 arsc Metal Homeostasis Arsenic Detoxification Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9779.702 5360.5531 4827.408 5110.5269 4401.9543 3209.943 7282.7586 9139.741 3524.1223 133602.2568 9244.0796 6616.3699 6581.3932 3477.1279 3477.1279 6180.9264 13545.6956 9974.1777 10709.2685 11406.4958 19417.4288 4590.6462 6428.919 11608.1025 5810.2786 17882.6927 4547.4839 24163.5153 4063.952 6029.918 6558.9084 4089.0822 12379.8507 300088154 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 5289.8109 2537.8981 2298.7333 2860.058 4221.9009 5497.8396 88187.5928 5854.2483 4179.5733 3478.8894 8030.3974 6134.4099 4972.7426 2315.5141 3749.2846 8061.3585 3250.7485 12251.1586 7499.69 9487.9779 3109.9158 3983.6414 3855.7985 2503.766 8835.1398 322419510 ppx Phosphorus Polyphosphate degradation NA Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 7459.9823 4382.559 8166.054 4384.9312 3098.5508 2323.8936 4132.0575 5054.5108 2676.1293 64964.4071 6963.3228 6833.8448 6292.1225 5541.3228 5541.3228 4820.8996 11893.773 8373.4169 8874.0898 9332.2151 6337.0393 3341.1601 4416.9898 9296.8596 2914.3185 17137.3917 8816.5059 11840.6339 4793.9265 5888.1901 6471.4041 3579.8608 7932.6287 383814798 atzb Organic Remediation Herbicides related compound NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 4048.5719 4052.0238 9257.6186 2804.4986 3515.2391 2756.2311 9240.2618 5179.3376 4874.8527 4019.9366 4046.1798 4046.1798 3549.3406 9638.4546 4934.0582 5393.7723 4131.2468 46323.167 5925.489 5685.312 3911.0598 8121.6039 6832.0408 1826.9865 2697.7587 7951.3043 3513.14 4738.5192 254474379 soxY Sulfur Sulfur Oxidation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 45188.87245 47326.2561 13091.9632 32493.3487 29889.817 17833.71695 25646.40665 202844.8557 537832.30475 221897.872 31069.4 31069.4 20498.62835 37869.1206 17567.23825 154702.68385 15160.9893 16877.01025 22642.44605 42111.62475 20044.58575 82481.75875 41399.7757 40501.3283 30870.98975 23075.9966 21636.92985 22688.613 44607.44805 157911575 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 27388.265 406615.6703 44210.848 21020.0888 17692.8744 89608.3889 29037.0438 10075.2567 22819.0727 31791.256 26880.6331 479763.3309 27582.0475 22641.2959 25401.645 49721.5318 49721.5318 14472.5271 60210.1658 35701.7807 23961.2768 29569.473 45818.4067 424228.2575 15957.8543 32132.3278 29632.5523 83197.5604 15008.2134 30741.1765 24842.926 20549.9256 23522.8446 29100.2588 42623.9015 82699197 urec Nitrogen Ammonification NA Brucella melitensis biovar Abortus 2308 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 7732.211 6899.2926 7797.1562 2563.0966 88038.3266 8690.5156 338997911 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 5905.3974 7004.9688 6612.381 9052.7417 14946.1363 5073.8392 5298.1151 6821.9449 7912.7227 3352.1959 179933.407 9048.0021 6491.3331 90561.2396 3367.8336 3367.8336 5539.9694 11344.2884 8097.0148 8423.4185 10527.9507 11582.8863 3786.022 4141.0741 11824.9811 5572.4417 20208.027 7802.9434 11121.6883 6098.374 7546.9439 6132.7396 5731.8541 18196.2875 381369732 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 11711.9722 17939.9551 5234.4175 7761.2584 13412.0531 10307.0844 13524.5727 244390.8798 7857.8068 9157.0865 26963.142 8834.4235 8834.4235 3734.7791 15985.3684 142283.7269 32162.1568 8550.0333 6662.6304 3971.8142 9426.0532 8277.2802 16454.9882 7817.5663 24902.2111 2541.2504 10226.069 5310.9055 32221.7343 407974344 b_lactamase Virulence Antibiotic resistance Degradation Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 7670.9763 5295.1798 7539.4495 141996.1642 5645.9968 7078.6053 8622.918 2278.5427 4476.8275 8855.6672 5828.2629 121569.8693 8160.0986 8823.3133 11419.0942 7247.6714 7247.6714 4600.0563 14786.8311 7002.991 8273.9531 29886.413 29722.8502 5806.6458 5726.4042 14320.7264 8215.9011 15358.4538 10871.2652 14450.4231 23089.4611 7546.037 11285.543 6462.7096 10284.6471 42524592 b_lactamase Virulence Antibiotic resistance Degradation Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 12741.6125 5526.1028 28107.6053 10577.9687 13272.611 74512.7019 9822.6744 17820.3341 39346.3336 316706.07 8854.3645 12691.5767 19688.9915 13524.8923 13524.8923 6041.5165 28242.4656 8849.9036 96106.0198 9047.3748 8032.3453 12226.6844 11215.4917 67413.4462 11226.1385 30510.9012 35962.325 98378.4615 9534.4059 11378.5167 26976.0202 8746.8599 32120.0974 163733288 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 5560.8973 11625.7431 11261.3368 4904.8705 17761.811 9954.3804 23716.0184 114536.9628 6070.3106 16590.8975 22152.2268 7991.286 7991.286 13535.4085 6733.2178 7690.0612 17025.6929 5549.7761 10188.0665 10325.2144 15430.8886 3913.4191 16676.4539 8911.05 18534.5256 8050.3709 16707.1017 5001.6831 4766.5265 343402166 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 7745.9688 12191.1473 15136.2497 5205.761 3210.0472 220982.3554 2883.1695 4541.7328 4790.6612 20941.4671 171056.4936 332890.4698 7890.6352 14543.8264 15486.9211 15486.9211 10158.6136 12051.0489 6117.8093 5585.8173 11220.7769 7500.9325 3195.1062 5846.2435 10260.0483 3208.0588 20522.4341 8502.8965 10863.9036 2378.8792 6094.7704 4887.0649 2586.2922 269125457 mer Metal Homeostasis Mercury Detoxification Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 6066.0636 18610.9561 7715.7509 5034.8992 269041.4221 5034.9459 9552.7216 8685.8926 342208.5503 4621.3729 7210.0687 8125.7321 4652.6739 4652.6739 27940.683 6144.1426 5283.9214 8361.5805 4312.7716 3753.0181 4403.1528 12147.5299 4434.9596 14342.3866 9690.8413 13146.0027 4679.1482 4276.3464 5876.3879 3193.7682 25370.442 254416112 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 9098.2259 2285.4083 5407.577 10833.2889 21456.1913 105913.2342 8222.6122 10432.5907 4175.2642 4180.842 4180.842 3557.8952 10902.3275 6249.4562 4158.6398 14337.5611 4597.304 5785.1939 6117.6944 6828.66 3294.5289 14737.7346 8045.5448 22991.5144 4953.847 6063.7794 6287.7444 4538.4888 6124.9348 351594142 pgk Carbon Cycling Carbon fixation Calvin cycle Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 38824.8131 17122.7203 23815.0049 19343.7144 7060.0394 80652.903 28722.5333 65188.1181 23677.9269 43693.9343 55217.3828 441971.782 28293.8036 65527.1549 51723.7472 26030.8691 26030.8691 20712.2075 60381.6455 28125.2468 39824.0852 58758.4742 39049.1037 17647.9872 25693.4699 31188.6936 54329.9498 108414.364 61433.1298 55172.0208 31914.5863 34833.845 78837.6614 26988.9229 48062.7314 110817599 amyA Carbon Cycling Carbon degradation Starch Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 176124.9445 10113.9757 947999.8274 37202.1694 105374.4188 53463.2095 115753.8786 44320.3354 39477.9446 34359.0686 39848.1686 38510.0285 1111283.4558 91478.9057 65829.9001 160184.6622 87270.2284 87270.2284 55454.3051 72382.1077 98354.6593 72205.2595 40952.3611 35220.9448 32296.5467 56599.1132 54779.573 36936.5814 181068.0285 39221.542 69305.4953 24679.0478 46572.7568 33175.333 89607.4185 933511.0821 341869001 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11950.7653 11706.5744 23658.1186 5644.6164 7706.7745 1902.075 2057.85 5560.1161 3636.8504 3857.9914 4496.6133 2993.0735 2993.0735 4188.0155 5896.1336 4061.1652 9671.513 2795.3508 5717.521 7718.3207 30939.6272 8265.3848 3266.2349 3049.6382 4107.1563 2267.4019 5952.3525 110835276 linb Organic Remediation Pesticides related compound NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 5904.1271 14576.3435 3092.7668 5710.3661 1924.2539 3339.4156 8629.2161 4465.6345 504931.5655 4163.0065 4155.9022 3087.3393 9179.6879 5324.1374 14528.9947 9863.15 3159.629 6907.7548 3025.5093 12294.7084 5874.9427 6370.9791 2975.7676 7010.5185 6614.6399 4568.316 8124.2876 170659059 urec Nitrogen Ammonification NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 118845.2776 92246.2599 62634.4348 45506.3807 107718.9802 160210.4823 162133.2054 65962.1969 187596.5602 154034.8694 87810.2474 1506297.4584 47471.1103 82582.7412 263274.2474 123123.3958 123123.3958 55977.4344 106072.4231 61206.1672 111304.2057 106637.134 88575.0356 61461.9907 78289.5433 88808.5944 63273.4273 298580.6956 152477.886 82036.3672 48067.9543 98323.6867 113444.2559 60133.1607 120919.9986 118472845 linb Organic Remediation Pesticides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 5852.9908 5291.8205 4817.3327 2814.1544 2229.9653 7741.6124 2577.3865 104005.3294 4988.2853 3910.8742 2220.1462 2220.1462 3234.8915 8499.6759 6389.0433 5532.9132 7022.8978 4648.1152 2681.0897 2822.775 6312.0372 2521.8312 9472.3716 4604.1782 7120.3903 3264.5977 2712.4413 3856.8321 3022.7574 9779.542 226357588 cmci Organic Remediation Aromatics Other aromatics Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 6775.7389 16030.0641 6810.401 9855.6319 3547.8271 13130.6619 5815.3096 3384.5324 23715.7789 7117.2198 25688.1649 7354.9621 11336.1168 18059.6155 18059.6155 3100.446 8941.7626 8428.5053 4034.2811 7171.8783 3487.9073 4668.8192 9173.6815 49632.2184 14177.0013 12726.8601 6429.3193 4224.8267 8097.506 8296.3275 2745.8122 162952281 mer Metal Homeostasis Mercury Detoxification Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 39361.3351 14916.5616 73206.405 109273.4348 8459.5025 18082.1576 42198.6737 32073.1645 93557.8953 27946.4084 53528.9206 887335.8201 38096.6903 50001.4161 28045.9715 27549.6558 27549.6558 19034.251 80927.2271 29131.4926 40260.1355 87423.2261 28030.0887 24177.7121 29185.8417 43832.0552 43217.6851 177297.4729 92001.8672 78110.9346 27958.0203 30681.5586 40934.5382 69505.1904 38843.8611 255021041 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 6738.5897 10434.7091 5775.4279 6519.6576 4643.9979 13413.3916 45212.2266 5688.6742 16629.6623 4935.2942 152226.428 7069.8835 6478.5581 6576.1989 2355.6454 2355.6454 3867.8906 14706.7243 3953.4429 3780.6946 4693.4377 5151.8321 3687.0286 5086.3147 15005.0346 4672.8169 13487.8478 7267.8479 8865.7482 3548.8473 6998.5702 9600.4463 4622.3316 11940.1579 378719377 one_ring_12diox Organic Remediation Aromatics Other aromatics Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 133352.6818 21254.7769 16619.8883 14607.757 57547.162 13663.7739 10668.5349 46580.2668 21065.8887 27553.6945 39141.4024 24714.1418 689793.2061 18785.1651 95044.9614 42227.0311 28494.7858 28494.7858 28150.0671 52383.7968 30816.0443 47564.3478 76721.0873 22321.8439 28764.4878 23147.4229 36818.4767 52750.7067 74815.8839 49893.1365 37246.4488 20445.168 111350.3005 34418.3625 27797.8809 36253.9542 333930686 trze Organic Remediation Herbicides related compound NA Serratia plymuthica AS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 52649.894 52140.6725 13145.4956 20069.1015 26343.1873 61523.9332 59759.9101 36534.6631 36159.0324 49233.4293 69791.4244 1590665.9329 121809.2645 42040.1259 54485.2194 107268.9474 107268.9474 28795.3953 123282.761 77168.3658 99211.8147 36769.1937 149386.3307 16084.5141 39360.1088 53812.9377 43871.4534 173419.731 102638.3388 62158.564 33632.0584 44447.7785 87901.611 36004.8944 69893.956 203366799 cara Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. JS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 33974.2985 23890.4809 4704.7083 15088.4302 7931.8476 10324.0415 5739.4451 9443.6241 8491.9011 7536.8599 6024.7666 64601.1791 10305.0421 200620.4021 23805.4495 23805.4495 3701.2792 12462.289 6341.3735 5004.26 14842.1658 12939.402 22440.859 6004.0121 8422.2782 14684.2347 34639.1029 5448.7656 9373.6344 2654.0312 4628.1818 10262.1614 7283.1501 7757.4763 5360700 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 14544.8859 389594.9238 12253.2174 11861.4093 229954.2831 3107.8442 5211.6422 3269.7697 13622.9966 9273.7819 8448.7635 1375108.7464 13058.7295 13442.3484 8636.6617 6895.1028 6895.1028 4649.4124 24023.8569 8860.4358 22450.0582 6773.9549 3099.4862 9648.6767 11089.8915 4556.4671 24909.933 10365.4923 9316.7461 4634.2641 8528.2795 7747.5038 3641.9778 23398.3725 124267321 PRI Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 51465.6416 85310.5113 10089.083 57748.2403 136466.4198 5304.4557 10023.4214 3464.6399 7218.8271 10969.5713 7818.5859 197924.6276 26599.3206 22875.2863 28047.1373 20191.5535 20191.5535 6683.1011 30379.8415 360890.826 13875.9544 17481.5635 47698.8467 18757.9776 14230.9829 40664.9934 14473.7509 25735.3026 35809.5929 76745.6131 6459.6639 28639.7485 17275.0583 8121.1995 7391.3763 121718263 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 8583.2129 3358.8894 2173.9053 18775.3938 5096.0235 7225.032 7654.5686 4820.1823 15839.4788 3076.0111 3076.0111 4621.5191 7837.7644 3803.4135 4006.9231 12295.7152 75840.4984 5285.4969 7038.5198 6464.0327 7210.6475 15866.67 5913.6627 9779.0682 6198.1523 5362.4991 8712.5022 4547.1474 14134.3224 238787810 amyA Carbon Cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 65342.6775 15519.4462 83900.3846 25056.0706 1733.7134 11232.7897 3898.3933 3584.5087 10323.4102 6604.1708 509822.0514 10065.4113 6077.5716 9188.6543 7139.527 7139.527 4177.1623 8943.222 6543.0076 8977.3722 49325.6894 12311.5502 4705.3249 4800.6376 6991.3948 3017.9797 10817.3511 6852.3889 13717.8464 7797.9683 10560.4785 7248.8538 2978.3607 344314545 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 42597.6773 32364.4083 16469.9157 19770.1861 15597.2226 15995.075 70268.6097 18504.4337 46022.7412 20752.8145 428868.6576 17761.365 21954.8568 43543.6602 29787.5234 29787.5234 18590.8746 55310.5937 30677.2623 36281.8987 39437.1485 26921.3509 12884.0625 21798.8135 46816.69 23332.2992 66155.6877 22288.2464 390530.3374 8651.5112 30521.4888 32519.3403 26936.2196 24427.8383 159046014 cmci Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 35245.4978 27683.4294 82664.0826 42168.4329 82807.2704 17457.3223 48524.9135 14287.1646 45514.8336 68916.852 32179.7954 445101.9596 39198.2032 27376.2462 42193.9493 61355.3634 61355.3634 56947.4624 102324.5067 31174.4895 15073.9363 35614.5936 2485356.2215 24955.3819 36745.7204 39739.7244 24991.0363 178342.8925 129911.971 77268.4435 19233.058 37651.0559 35593.2887 20523.6779 34809.2636 297556347 cysI Sulfur Other NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 13021.2765 10073.2145 7622.4002 21153.425 4348.666 6525.7007 2502.6684 5127.5702 14044.5526 3809.0652 141221.9183 9617.8131 7122.6342 7978.9619 7027.1493 7027.1493 4262.048 11951.789 9758.6457 8332.9397 5550.1628 5104.673 5217.0794 5554.8074 11820.7804 4310.887 14170.0813 8770.6258 11062.6819 5171.3944 6620.1619 8094.5595 3591.2593 8739.2065 126706083 mer Metal Homeostasis Mercury Detoxification Rhodobacteraceae bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 22561.6744 24656.2646 25963.1385 54751.6896 18233.4474 6399.9912 57407.8256 36282.1542 22422.9898 25204.1535 41876.0223 47233.7918 452362.3311 21675.2944 47279.022 24749.0076 22687.7977 22687.7977 14722.6631 48455.4193 27029.5956 33839.254 31782.3895 25528.1565 34824.4076 16453.0698 31106.3001 34206.2838 70774.8239 20892.7022 38201.7877 15583.8505 23553.9714 24196.2889 20736.4717 31352.2685 295977283 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 4504.5216 2999.6655 2290.8939 5865.1632 4676.2598 7895.7116 7109.4336 10882.3157 2128.7789 76803680 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 110237.8628 63766.9703 118740.1837 100492.7344 61832.9372 162315.1677 21474.7807 62694.2734 42445.7568 125087.7248 91687.5653 84373.2291 1865851.0465 156027.6617 154005.4562 167187.157 134004.4246 134004.4246 43126.454 93154.527 42684.7226 107995.7321 90052.9354 63082.4198 41922.8646 158673.0624 93135.6536 49236.245 152040.5992 28724.3532 88494.1474 27620.8546 50075.7953 49897.6542 48855.6737 78355.6404 114327008 exaa(moxf) Organic Remediation Chlorinated solvents NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 4700.5982 1458432.2219 29901.701 4925.4546 2947.9395 5517.9952 3151.5782 755040.5269 7665.8263 5870.9102 2772.4023 2772.4023 9464.7625 48074.2356 7419.203 4814.9548 4771.0183 11996.6873 3218.0883 4199.0626 7853.6685 3170.8807 21127.4498 6711.8533 13310.7629 5900.3523 5129.8237 5816.1259 8104.7652 6010.1887 116090305 aoxb Metal Homeostasis Arsenic Detoxification Thiobacillus sp. S1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 24153.7136 109623.6427 5771.8677 11745.0761 7004.2155 35837.6232 20710.7168 308023.7149 22568.0274 5027.4061 13471.1501 14903.049 14903.049 10543.7652 38422.0409 229417.0293 55320.2799 9726.5605 719906.4791 22739.2828 13621.5987 11132.8338 17454.3009 33679.4706 14747.3648 16128.2273 14480.6794 12348.0972 20368.0314 109285.2356 226831.6421 37548708 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6237.084 116623.9656 4213.0031 5473.5106 4975.8526 6444.2338 6762.0189 7455.9161 7455.9161 6813.8342 2691.9635 5685.4103 3220.4312 2443.0278 5300.3612 189336037 hbh Organic Remediation Aromatics BTEX and related aromatics Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 14864.32235 11109.043 51081.51805 5091.9359 291178.12595 6729.4068 4847.8231 13759.0176 4438.10085 10392.35245 9991.41615 7315.1021 105638.9116 37920.64565 7462.0096 20302.9265 35722.4696 35722.4696 10258.8653 109643.56665 7586.3376 7023.97815 10152.3168 4400.7231 2796.53575 6158.07765 12147.93445 8789.1791 17552.4208 49189.0294 9688.4755 10376.64025 10221.23815 11218.33075 10110.705 6513.64335 224437326 nrfa Nitrogen Dissimilatory N reduction NA Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 10869.7977 2674.5964 8849.9408 7085.5265 7085.5265 2545.0031 2230.5835 306516855 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 45453.2642 60500.036 11021.1611 183520.945 12205.3151 11185.8642 16100.8914 8792.2473 14644.4415 28029.922 20741.4442 502194.6688 32892.9549 62324.2838 35440.13 44788.0575 44788.0575 17291.4623 35564.7678 30994.896 15196.5966 40358.4284 12717.7386 11823.7251 16309.5017 32068.6541 23905.3148 48233.4278 36869.9382 38172.5852 28419.4252 20912.938 26961.7114 10280.4939 14244.3887 325918857 ppx Phosphorus Polyphosphate degradation NA Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 22553.6026 36110.8968 46281.3713 50984.2308 9818.4687 57206.2949 20276.5568 39190.8423 24082.1423 19817.5477 15357.3626 436124.9191 28295.8824 34382.6204 31665.3451 19638.1257 19638.1257 18099.3848 39105.1297 64543.7881 17654.0077 40934.4765 19009.2418 22982.7692 22979.1907 34923.6598 16747.7971 102378.5301 146997.2169 45381.1137 19855.766 19677.7272 46493.5847 74978.3355 38829.7165 268608189 xylanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 11158.382 4258.7659 4588.9275 3165.4048 10255.8957 15401.2293 17793.8329 5913.3045 134301.2326 5183.9456 5841.181 4944.7981 4944.7981 5586.5703 10168.0298 12322.5191 12497.2958 10935.4848 7343.9458 6874.0338 6553.2018 13431.9734 16533.8192 176227.9312 13972.1119 11800.2351 9614.4536 9251.6628 9761.8731 4438.3362 393714.8423 229473067 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 76515.1583 17827.0599 15364.819 22889.5758 40856.7764 22244.6702 22101.7353 15989.1299 37853.7581 30261.7142 47024.7666 42958.1148 461216.3779 43495.8149 32090.073 29545.1368 23118.8604 23118.8604 14387.1768 51847.9167 36237.2646 23917.0083 30723.7596 48959.2062 22823.3717 23027.9185 321954.4865 30065.6125 242998.0061 47645.9624 38244.9453 15620.1572 30857.7632 21473.6551 23117.414 26262.9422 156058340 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 137388.1355 367115.8746 6339.5239 3994.0796 26129.2912 9574.6773 57039.7011 5579.4632 3868.2868 5684.8061 5759.7146 5759.7146 5668.8419 16726.3823 7373.5951 17196.5308 5859.475 8806.8272 7124.6559 10662.8563 6260.0808 5679.2742 10094.4216 4964.1042 7632.2692 18188.8969 11126.331 296421199 pec_Cdeg Carbon Cycling Carbon degradation Pectin Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 42740.6122 27256.5111 20714.6147 54372.117 14439.82995 45180.1419 29139.1373 42579.8807 63406.6194 119261.9945 1098382.7202 32198.7533 55739.2912 92755.9831 92755.9831 37370.6196 37579.7118 33744.8817 171184.8598 19276.2051 29256.2347 40884.0683 52317.9456 46414.1702 30659.148 91855.5115 43791.8356 73902.6362 21351.3123 53970.2448 40071.0033 39135.8717 117931.1888 171910108 glucoamylase Carbon Cycling Carbon degradation Starch Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 27175.4333 8400.1175 4856.3283 9213.5878 15779.7688 38818.2694 38053.7708 11440.1461 14276.2478 21459.7892 237439.5098 9593.3824 17776.5682 72050.182 30659.9232 30659.9232 39923.8123 89040.5746 13459.709 12670.737 19853.9342 8193.8375 3981.5536 37601.7107 21234.9999 9061.794 77386.7944 21587.7717 21639.1683 12001.0289 10133.3761 10614.3622 25367.7631 91504.731 255062592 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 46848.2223 13725.4315 106397.5341 8664.7554 12246.1708 13341.2906 17698.0762 14348.6752 12609.4175 14780.38 10391.7883 479379.7213 15142.7063 20775.5638 26013.6735 17412.3496 17412.3496 10664.8795 56392.9222 15587.37 11231.3598 52860.9026 13469.3109 7632.8332 22304.2685 21293.0293 15415.7178 65496.6958 18743.262 16197.2065 8386.1766 35235.0069 15746.4451 50748.1037 18435.1714 328837633 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Gemella haemolysans M341 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Gemella;species:Gemella haemolysans; 4482.282 3877.474 74627.7843 3394.0429 2912.2483 6532.3199 4111.6367 4003.3871 2564.5234 5360.721 2315.9035 8956.2582 5582.5284 1907.934 2891.9683 126740618 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 39211.6098 43950.0024 21539.8026 30080.9874 27446.6407 9396.66 29915.8191 20326.8461 46955.2373 30648.2562 31810.114 19671.4523 683019.7811 37365.679 30814.825 31958.4625 18777.5401 18777.5401 18003.6192 48278.216 26989.6724 34473.7251 39837.7141 53274.9127 26787.2351 38997.9335 33018.4481 15645.953 51023.8313 43106.2818 38348.094 16019.3814 18969.8014 17938.7462 19821.8001 42618.269 390626826 cmua Organic Remediation Chlorinated solvents NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 7513.37 9294.8571 3142.5402 2170.8754 2134.8369 4611.0599 7709.6068 2994.9218 504887.3201 4759.0688 5013.4622 5354.7895 2201.6673 2201.6673 4563.3235 10132.1611 6356.3065 3624.5313 6249.5208 5978.3049 4863.0205 6281.9966 8295.662 2623.6746 13897.7746 4654.5161 8279.0466 3315.2336 4000.3676 5301.5606 2925.4671 74056559 ppx Phosphorus Polyphosphate degradation NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 9712.0381 5329.1257 5025.3352 12901.6457 9134.5103 9468.479 9795.0077 13615.7087 36732.5652 325928.1596 7038.0933 5597.1523 14343.1932 8613.7203 8613.7203 7232.3855 17049.9344 11431.0832 7166.1076 8971.4572 7026.6901 27692.11 7701.9798 11716.0912 6159.5912 15240.2917 8081.054 11450.6182 4777.8988 7103.8683 9820.1791 4520.344 7452.1699 211587491 exoglucanase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 69736.783 10278.5515 5261.9413 32594.7756 3630.0743 8145.1323 109290314 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24131.6687 12985.1009 23911.3741 6856.5001 7322.8692 5548.2334 11181.3189 24657.7235 22912.7597 184199.2015 170745.5754 11528.1298 54061.612 8096.1098 8096.1098 16747.359 31890.5409 14167.4308 13885.2869 12128.6706 12921.7637 9243.9119 14883.4209 18997.4615 13217.6974 27385.8311 19852.9606 22763.4832 9061.4217 12347.8415 15150.9481 36042.7286 16242.986 340028803 FBPase Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 58055.9224 28232.6648 27910.3893 33552.1223 10237.1897 35899.742 23813.3277 31748.5104 108899.0982 171103.243 36389.5861 735356.4426 84198.4988 61547.8268 131410.503 115412.1253 115412.1253 54100.1647 111212.0109 73223.9768 116748.3755 91895.575 88138.9506 54378.2372 55703.4038 63112.7678 47464.8151 120351.5148 56080.2891 117868.6834 57628.9272 36224.3487 97273.8855 63321.5885 81727.6389 330958799 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 56515.6512 16568.3041 96756.5362 38164.5944 37157.2425 167469.5691 28555.1961 34430.5032 37024.5602 43508.2262 38430.1264 27167.8714 1639589.3176 36788.7508 42517.0267 42737.693 33634.3678 33634.3678 47151.0285 56833.4174 36409.5979 84860.1783 61090.3106 344311.3804 43580.1572 47289.5514 47827.936 25649.4874 84603.5022 22304.0971 56044.3488 25312.1386 41789.3229 38292.8505 73238.1619 44227.8335 395220285 terc Metal Homeostasis Tellurium Detoxification Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 12150.9415 14999.1904 22663.7083 149059.7646 50118.953 10093.1206 17151.0522 8946.501 8102.7499 26482.1895 8821.5829 314412.5667 16742.744 23414.5743 23043.338 30545.2405 30545.2405 9407.989 15846.9064 15796.5031 4208.8835 25047.2922 91849.958 15459.7217 14370.1017 35747.8978 9298.4887 36957.8103 43368.2659 48971.7176 14531.6964 19388.7435 12774.2501 16843.3858 11836.5213 377531573 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 5370.7245 8739.4147 7413.4212 13792.2643 2988.0112 37424.9229 34404.2088 8663.1226 43986.057 10023.2818 10488.5475 10488.5475 31106.9059 8417.2999 6890.4355 33303.5467 36553.3289 4598.2858 6885.3228 4902.7563 6852.1585 39112.2603 24385.0842 13815.2797 18928.9547 4719.6934 7030.6041 7516.5978 4105.3582 13506.4862 17133187 tktA Carbon Cycling Carbon fixation Calvin cycle Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 9045.3915 12326.2703 11553.2184 4220.1958 10409.829 6807.8068 8253.978 3300.4445 161751.1031 6292.3085 6993.1868 2735.1947 2735.1947 4600.9851 10143.9338 7120.946 31802.8314 8051.0139 9111.992 3857.3333 4327.1109 8921.7099 3415.6618 11362.1986 4366.0542 8090.3711 3712.4432 4407.1279 4352.1252 3131.3178 8057.0394 124488195 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 13765.0599 6147.1803 4926.9093 3398.3691 3767.9831 2635.9563 76417.1739 3734.9219 3424.5627 2638.6287 2638.6287 3456.1179 8034.7554 4928.0755 4607.2604 4632.1647 2682.4172 3257.8859 7693.3265 41162.4163 11239.3363 6336.5115 4214.7526 4554.5093 4554.8143 2482.4476 6729.6707 375054882 alginase Carbon Cycling Carbon degradation Alginate Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4672.155 29823.8643 7294.2219 4089.5142 76178.1891 5114.9632 3683.3556 4536.6732 3209.3749 3209.3749 2925.867 3592.0076 2808.2282 9206.9558 2562.2688 5054.6898 8594.6387 3107.3017 3819.6096 6305.6639 188572645 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 27530.4205 145166.531 7801.6523 1983.1972 1983.1972 11807.3563 2933.0609 3423.3843 145216622 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 13981.1217 151424.5508 74944.4219 10891.6069 9643.0553 32156.9101 6119.1105 12709.01 25049.8077 17813.2947 451724.5293 18057.4235 62088.3968 33815.3205 27242.0812 27242.0812 21342.2534 40733.9088 18821.4176 32316.0148 17398.0443 28027.2766 9323.1054 23473.5601 38755.3967 11602.2793 91025.5295 52549.4545 44250.8692 29761.9938 27183.9442 35203.5668 14163.861 36297.7696 363718338 fccab Sulfur Sulfide Oxidation NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 148264.8756 71708.9667 54307.3308 114946.5014 128827.4128 64470.8286 78496.0817 553828.3933 77894.606 59734.8599 75689.3564 54442.6541 2318077.0882 78847.8027 81157.1923 126442.8646 73959.6499 73959.6499 42169.5597 110963.9992 49397.2726 62913.9148 106508.1972 81950.498 107203.5145 46246.4294 82925.5573 94527.8408 205962.7851 103795.6797 81912.576 52616.8155 44047.371 72348.3287 60672.2138 89093.3786 345112851 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 66985.2234 148666.6838 38173.324 93241.1961 12516.5428 19277.2446 40698.9862 27955.996 31941.9279 38034.9742 74115.4564 2829378.8043 81038.9638 41594.9102 86501.8423 55678.6656 55678.6656 121060.4865 187789.9055 53481.548 74831.0935 180706.4912 55693.0327 55059.269 36630.0805 60491.4413 85646.8535 116302.3802 96941.9595 48011.0865 25870.5919 46361.6442 62413.8649 28116.8682 38094.5485 219952231 nitrilase Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 14469.548 5864.2203 6377.9553 14599.1695 11317.7196 34852.5476 6306.4223 7974.084 18698.3491 713352.2223 7615.2576 6015.8655 27299.0966 10386.648 10386.648 7460.7641 14663.6036 29582.5879 12249.1273 3412.9455 8232.6894 14099.8631 7647.0983 23530.0596 12031.3227 16238.2174 4666.6889 8197.1511 7912.3364 4168.9117 8441.0559 19879576 soxY Sulfur Sulfur Oxidation NA Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 6035.5507 6668.2306 8522.9376 2343.6068 3826.3067 4247.1065 1930.52 1930.52 6464.4115 3834.9386 5076.7535 1790.4907 643641 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8156.4316 6638.834 48475.482 8951.5864 6739.0183 111270.2399 2592.0947 6508.4988 5304.2036 6151.4741 168102.4553 9583.7046 7364.7238 13859.2759 2833.8007 2833.8007 10662.6387 10031.4524 9318.3424 21053.3514 8116.2438 8248.1631 5599.8948 4521.759 10661.1253 5353.0014 21446.2439 7166.8837 14637.6342 4667.8536 11780.4357 7228.7119 3736.0237 14393.9454 314945367 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Capnocytophaga ochracea F0287 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga ochracea; 5971.6701 4884.752 6478.2489 8757.0979 11450.1654 6019.8829 4383.9014 2898.586 2204.552 15579.2379 5172.7567 32900.9319 349785895 cysJ Sulfur Reduction NA Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 6106.4989 7372.5861 6257.765 6295.178 3695.9984 5923.9311 4201.6105 198022.7723 6081.8228 8823.8731 6458.4181 4466.7346 4466.7346 5942.6697 12755.4035 5706.5999 7280.7286 22904.1566 2723.2551 4390.6792 12297.1948 3459.9481 10258.7854 7476.803 9683.8708 3508.9882 6473.4458 5396.9089 4756.2474 12617.8671 124265860 urec Nitrogen Ammonification NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 15051.3298 4439.6255 113325.4598 2759.7816 4204.3143 2295.1326 8930.5209 16056.0839 6596.7783 223160.0653 8070.145 22602.4511 66311.7433 23448.3808 23448.3808 2919.1114 13168.003 9550.1003 5480.7593 5066.4311 6105.3032 24251.9535 4961.798 16928.4685 7305.3718 2017.2089 5777.9061 7356.2096 6787.6226 7279.5462 290955823 gdh Nitrogen Ammonification NA Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 15918.0132 14080.1652 20942.7569 12331.2681 10880.758 16957.7566 14546.1803 13544.8629 21126.0437 11466.366 324048.8714 19726.1223 14460.8649 14761.3294 7954.2292 7954.2292 12098.5702 32624.3952 19590.8206 21413.564 20978.2424 23564.2676 12578.1115 10970.1845 28049.5078 22003.7442 40268.187 23311.6724 19978.5827 12046.2615 15307.2735 50906.6298 13204.2847 23596.0078 89897567 dmsa Organic Remediation Others NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 14711.7805 12061.5043 16022.0181 4523.1106 1822.7652 6930.5252 11141.9817 5406.458 216224.6415 29987.8913 376156.085 8575.352 8005.6633 20566.8459 5514.992 5514.992 25928.6236 26960.6055 8346.4699 36349.3826 216306.7154 11388.6573 3131.8261 12436.201 9703.7028 15388.633 95579.6536 22876.1227 45546.887 24430.1321 12246.4145 16254.5436 16954.877 10809.0096 110826490 aps_apra Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24000.4098 35345.4243 95865.8147 16477.9668 121173.8214 65462.9996 13628.857 37314.7967 25325.7718 16328.1871 22306.2045 74142.9975 234602.5212 16018.3595 15071.6696 104413.9502 13469.0196 13469.0196 12385.5822 39195.048 30562.8029 10425.7091 15540.2372 25712.7035 20902.0593 40586.7415 39012.3237 22915.513 45476.9866 25184.7933 19593.8172 17355.2996 22920.6696 31445.7215 8608.8064 16518.4345 76164999 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 4109.5869 622222.509 152016.7479 8863.8764 19308.0291 5230.7337 5592.0159 6335.2843 5678.3591 3500.3432 108472.2318 4129.6341 22277.8717 13555.6012 7718.9505 7718.9505 9703.4275 3940.7697 4436.4407 3429.3202 4438.7798 17390.1151 7630.0548 10766.2688 19661.4569 10827.9723 4932.995 6168.0983 4475.5174 5649.4733 4497.0017 284164838 urec Nitrogen Ammonification NA Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 35480.3481 32010.8879 268534.908 8739.9669 6172.777 12551.8166 16101.2217 14573.9129 25434.2408 707388.7385 36819.2459 11418.0085 38271.9382 41909.9357 41909.9357 14889.9022 33151.2774 42090.5539 58368.8376 53109.4305 10926.6138 19758.4474 30154.7651 14931.9132 13892.21 57792.4325 30695.1192 22379.1667 36745.4541 15662.6725 30298.6182 13965.4828 69983.3242 333743526 proO Organic Remediation Aromatics Other aromatics Delftia sp. Cs1-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 23271.8172 38644.3698 6959.6681 16500.6553 39140.396 4352.9513 12663.4532 9409.5812 21263.8727 196433.7201 12416.7384 84937.4759 12813.0388 9335.8094 9335.8094 8172.9396 31004.2862 15292.0088 156100.8222 129263.375 12284.6055 5882.2306 15824.9682 37322.7616 27314.8574 39797.6199 23356.5833 30940.2289 12700.8324 31967.925 14307.4381 27187.2084 8725.0269 302525977 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8272.516 42001.2648 5426.9463 4648.9848 7418.1309 8536.8366 6001.938 20800.8219 13925.0273 215388.551 24489.703 742586.9802 17991.1633 7901.9164 7901.9164 42727.362 19841.6874 8941.124 13986.4427 22788.7047 6780.9472 8284.1703 8028.8565 12892.9447 17772.2017 155396.1928 13428.716 26969.0444 146569.0565 53556.3159 12932.2584 9018.2735 30676.9138 38524460 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 18282.9851 7051.5307 6358.7663 6739.8522 5420.2476 4317.9708 3261.8497 5545.9593 147385.0334 5093.4381 11454.4395 7400.6488 2438.0072 2438.0072 15215.0247 7204.3898 9860.6037 12602.581 4119.4754 2883.256 8995.7561 8085.5827 4372.8444 26512.3502 6213.0563 6717.1803 5396.8009 5204.2847 9295.0462 5667.7388 78093568 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15361.0358 7527.2387 63374.7936 22105.5094 18085.0738 36052.1144 17978.5691 12641.9299 47162.1794 16388.9097 304323.8549 18644.3343 120824.0338 180045.3396 20608.8873 20608.8873 21008.4399 24319.3445 18384.7794 15949.6727 113101.8413 23680.4913 11515.9281 12351.8866 29431.7459 18540.3604 483440.138 18209.6061 27952.4652 13157.5575 20523.4041 19006.9142 18296.3297 27154.5408 226346798 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 113032.6187 17159.6973 13067.0738 13745.3393 7721.4122 13668.6714 15022.8103 18349.0943 54978.2943 32453.4195 13363.4509 815913.6215 15710.5842 36007.8926 44806.8852 17796.8544 17796.8544 15171.1854 58984.8874 25200.0616 33535.5826 31773.9176 61518.0714 13136.1161 14390.6471 46830.2972 37901.1329 66110.1646 17292.2218 43000.56 16546.7497 21128.2479 19529.7939 17515.5499 58915.3076 377528789 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 17136.3125 5506.1056 7192.0303 13306.84 6102.7072 16177 21531.7777 3891.5936 10890.6352 16306.6336 8742.3461 199484.8845 12367.7064 62513.1035 9533.5884 5656.3668 5656.3668 7563.8626 24473.9507 11428.8726 17410.667 15062.6572 13079.2736 7443.2925 10618.8583 24026.8051 12304.0694 38336.1616 9879.3545 14565.1599 12212.7497 11880.9454 13414.7127 12056.3118 24789.4132 257454574 mer Metal Homeostasis Mercury Detoxification Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 268656.2123 5120.1696 35310.8626 4218.3219 5095.3336 3012.43 7236.3409 7000.8724 11898.1048 158854.7395 13836.9807 6632.2412 4840.4806 3642.3782 3642.3782 5440.914 13629.5127 9406.432 102669.0723 11681.1456 13918.7526 4939.5285 5079.7552 13109.6425 6631.277 21682.583 5375.9363 12262.5312 6696.5423 8730.7599 9685.413 4215.4254 7423.9146 118168943 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 31735.5284 45413.2651 27535.8927 11564.6483 49575.1265 18626.0819 15447.9019 17295.0613 33705.2962 28854.2979 56386.4504 394573.2397 19373.7387 18813.2372 10053.5629 19540.656 19540.656 79862.6401 64266.8871 25132.9975 22941.9766 32748.335 29030.5014 30517.2558 20449.8567 47195.7815 28819.292 66337.8996 33529.1031 32507.8284 22893.9685 18897.0492 97487.1884 12554.5479 31007.1666 371718836 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 12653.9913 11367.4814 6937.5608 8555.4533 22221.8961 6086.6949 9912.73 4296.9195 14144.221 20077.3776 17655.3078 17655.3078 3130.7963 9838.856 4702.7199 13582.1181 14255.3553 4220.4127 2916.9403 11209.341 23397.4663 12186.2038 34875.3709 17645.3848 10878.146 3875.1466 28032.1564 15573.5944 15455.5095 356880467 gdh Nitrogen Ammonification NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 6623.8139 2405.5046 20091.8624 3650.2649 6566.2559 3860.3066 77460.3834 7740.8082 3323.8958 3966.2065 10350.1132 7265.9062 34269.24 10687.0843 12995.1565 3114.397 5340.2619 5541.8235 12501.7799 11444.2266 8390.7979 11150.3107 1884.9349 3857.7831 7912.8267 4628.0735 15719.0222 227498100 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 6515.8061 12600.7399 4815.3392 14540.1918 4672.4294 13807.4164 3673.4836 3534.4802 5500.7521 110235.2727 10362.6371 4504.0875 5926.6621 3208.2204 3208.2204 3957.858 8931.1987 4768.0518 5237.026 5075.0275 5496.096 4282.7438 4228.8584 8035.8791 14205.7621 8767.7165 15286.2784 2672.7992 28340.1372 8759.1266 3245.1761 5150.7832 398123725 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7053.6851 10037.9089 3549.1294 3276.5372 4098.8255 28945.2062 13577.6411 38046.8974 70341.8708 6103.0137 10892.042 11587.1316 11587.1316 6306.4519 12544.6219 4607.8011 20313.1703 26209.1648 6178.8047 9358.8827 13998.9682 21541.7392 8540.8002 160980.3578 23218.2765 20886.5506 5440.0605 39050.8378 11606.9776 8646.1051 13850.2276 380696320 amyA Carbon Cycling Carbon degradation Starch Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 8767.3228 8286.7122 5997.4634 18140.7881 5801.4949 15229.4771 2602 6840.3882 11147.0798 3503.6262 192321.354 10591.8299 9523.9651 5846.8352 3870.9154 3870.9154 7215.432 14449.114 11485.6366 6210.9434 10583.7823 11120.3977 4429.9701 4699.3942 12384.2335 6328.0365 18868.2871 8111.4085 15741.3899 6213.2696 6906.0351 7556.8446 5724.2027 13294.2641 85711074 mer Metal Homeostasis Mercury Detoxification Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 4949.7945 24684.6272 3091.0679 2708.8008 12571.5519 6648.4968 5816.1024 3832.9103 227720.9997 4866.2192 8568.988 4042.059 3136.8409 3136.8409 3735.1427 9394.119 5935.1343 10088.0823 5023.6849 6348.4429 3428.9437 4163.6191 7250.0781 12804.6442 12741.6769 6822.779 40969.0982 5410.4596 5217.61 3728.2569 6816.7135 357425533 amyA Carbon Cycling Carbon degradation Starch Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 7798.6409 9833.0545 11592.3366 3660.3274 4635.1588 3328.5185 12084.9172 3505.9522 89311.6085 6407.0447 5163.9662 6516.9645 2002.0856 2002.0856 5113.5582 12053.7541 6792.7107 8143.2141 8419.1858 13581.3852 4101.4098 3549.9743 7078.3119 2826.3946 14755.818 6650.9805 7558.9555 4195.8437 5822.2166 6738.689 4428.6599 6495.668 110680817 dmsa Organic Remediation Others NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 4901.6606 10461.2535 31121.82 2487.4626 4641.5313 8129.4396 4278.4181 2176.8673 2176.8673 2999.0389 9418.2058 4826.9097 7666.8439 8058.6355 4964.9013 2637.2501 5684.8866 9449.6679 2915.2765 12557.1886 7446.6869 6421.3344 3019.7647 5588.616 3434.4086 3429.8808 11658.4584 39648290 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 819109.0848 535743.0655 735803.98 1135883.9476 2043653.0767 307851.7011 354840.3028 713356.6909 430427.2299 605436.5191 582139.6397 384688.0753 15647787.2458 833642.2314 696209.7725 1180459.761 649445.9271 649445.9271 443721.8076 691660.5308 472737.4833 706608.1268 627434.9335 2291158.1967 416125.3919 378901.5882 835431.3055 290294.3895 337082.5143 739276.3421 672918.6897 366984.6498 342494.5933 359899.5755 344445.4404 1169458.703 196171237 urec Nitrogen Ammonification NA Anaeromyxobacter sp. K superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 5201.818 3079.8345 4381.8469 3336.8962 3865.2637 3173.1036 374017.0727 5744.8852 11228.2205 2862.3631 2862.3631 8556.9222 8788.1411 4891.1575 4236.5555 4437.131 13641.8547 12968.2755 5564.0801 2346.0676 6016.9927 4642.3707 2122.057 7465.388 317048671 phn Organic Remediation Herbicides related compound NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7155.2053 4269.2425 4136.27 3977.4271 4210.5705 70894.7854 5318.7161 4920.1736 4990.8647 3125.275 6629.6412 10169.9382 4889.5548 7985.2248 3744.2278 2941.1999 2953.7071 317165906 mer Metal Homeostasis Mercury Detoxification Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 19492.0186 2725.0382 3621.1486 5859.8103 2149.5591 5042.1385 5042.1385 14668.8461 5934.5231 6634.9058 3311.6365 5988.3915 5899.5999 2630.3421 4080.2447 3737.1086 145569142 ppx Phosphorus Polyphosphate degradation NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 128764.9881 40671.4068 22576.735 38199.6225 10762.1111 180956.4994 66873.076 72511.3346 44143.5904 83995.5815 91098.3603 3766641.4205 71517.6495 126471.9579 154150.9319 87975.4829 87975.4829 53681.481 200009.7912 57795.8512 186969.4083 146597.5449 148553.7121 109678.5199 87541.338 58722.0799 50238.0291 229360.149 111305.9231 149781.7491 53184.6116 92443.9613 79394.1364 73705.3841 163958.3585 295441282 SoxC Sulfur Sulfur Oxidation NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9281.5726 20341.8736 11843.5732 5012.9438 3876.0924 3876.4933 6946.511 4461.8022 151046.8814 7738.511 4298.806 6664.8485 6664.8485 3111.4347 8322.9961 5401.9721 14428.8822 5207.8227 4137.3549 2978.4342 3633.1587 7775.8581 3698.7467 10781.023 7668.3143 5004.7148 6059.1708 6215.3843 6592.8454 18965.3687 11804.8451 4580557 tfdb Organic Remediation Aromatics Chlorinated aromatics unidentified bacterium 202NPUT superkingdom:Bacteria;phylum:Proteobacteria; 63455.4626 67443.6891 14878.0686 7732.5635 30373.8249 112356.825 70940.7001 29944.0478 55371.3767 141435.364 53470.1302 647647.3032 46596.5327 297379.8089 83234.5831 37098.4996 37098.4996 27886.7983 62826.2607 83280.0098 73816.1981 56147.6696 31362.41 37202.8426 28567.1335 34947.1322 94849.1115 156932.1795 54581.6194 40232.0389 19297.9891 32959.7512 40312.4307 93926.8084 18919.6784 385179133 limeh Carbon Cycling Carbon degradation Terpenes Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4631.45 3970.7033 8616.7414 3711.2695 66415.6939 39926.7886 4415.5716 4191.3781 4191.3781 8987.7584 7150.8328 6061.8922 13467.7323 6329.1614 11117.0464 4591.0667 7626.4239 2193.5044 6775.9965 6684.5826 363423712 alkk Organic Remediation Others NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 278788.8836 47626.3784 173647.4216 43690.5405 60876.6947 51430.9908 110926.8103 209935.3698 107564.9829 151266.1818 89244.6965 119031.3815 4212889.6651 97865.095 108685.5606 249465.131 105450.7106 105450.7106 88196.825 335536.1383 156721.1493 119013.5465 136210.4797 412463.2608 70799.6112 78126.642 218643.3454 110556.4933 210519.7183 144977.3344 159116.83 174716.8282 94858.8299 94386.9314 128802.6178 218663.0023 336030213 amyA Carbon Cycling Carbon degradation Starch Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 46511.8311 53823.393 835334.4224 12079.2932 5357.7906 8097.0062 24612.3467 5263.4668 21675.9317 22935.3661 15285.5094 218145.3245 23901.8101 26161.8803 24715.9246 20005.5395 20005.5395 16170.2204 62404.1752 21071.9355 23720.1185 99591.2219 34662.0996 21857.6604 30230.8053 23591.4107 34170.327 61509.7766 27223.9784 52307.2877 14477.431 29139.199 18251.2922 17096.9645 43770.9808 238059669 xylanase Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 46210.9645 14007.1134 7182.7648 4346.2749 216539.1405 38101.6269 278165.4529 2522.1275 8108.0406 6402.8513 13911.6637 237613.2567 10997.5121 14675.6375 27962.9729 8847.9229 8847.9229 17913.8941 18359.8192 6650.8944 8376.342 122270.3953 7738.6287 3044.7297 13454.5337 22358.3649 13958.5401 35121.9757 28077.9805 19257.4647 11698.2088 28311.9014 14859.1216 3343.3154 7090.38 154498821 dsra Sulfur sulfite reduction NA Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 3862.0986 7918.4746 2713.8922 3708.7501 4761.267 83315.9236 7992.4965 4291.0813 6867.517 4761.209 4761.209 8084.0807 4624.2751 4594.647 3594.1368 7546.3776 7915.7979 1802.4025 3134.9204 294473644 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 6353.4223 11508.8764 22370.0079 11444.9757 24983.0739 9751.7013 11129.3899 9044.3953 4358.6057 7960.4169 15072.1414 63413.7035 162603.2194 15742.2415 12468.2371 40933.334 15884.776 15884.776 4957.1504 13154.9264 26773.3084 12513.0235 7521.1561 5477.5579 6492.9579 39951.2181 46904.0303 21875.5937 23874.9831 13386.0136 21179.4282 24461.793 25692.0643 7259.1098 3770.4302 8585.0272 162454351 chitinase Carbon Cycling Carbon degradation Chitin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 17047.8942 107213.2319 9560.8359 9579.7817 12771.7618 21957.2758 15336.0234 3626.5296 11490.2125 14360.2389 36657.1044 163215.3036 13057.1246 7930.7437 30599.0135 25257.8989 25257.8989 14264.756 18711.8474 11426.509 12607.8578 16923.4177 5489.8866 9168.5133 11498.4966 22741.8003 17927.3474 24124.7339 15418.4044 63944.0063 9444.2488 9304.8256 14137.2751 12261.5643 32054.6015 328544276 FBPase Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 850225.697 1242352.2358 42552.064 75543.5067 152511.7846 31296.2881 59413.2122 119594.9481 65992.9688 59924.5067 73395.7462 1603774.1266 67650.4436 220804.7983 101480.994 154107.949 154107.949 137701.1793 234696.96 62809.0312 334323.9797 96041.6204 116756.7251 47876.7462 123534.8338 94278.8131 157719.2474 215943.4486 268947.7257 142449.2633 34888.4646 85267.8277 74809.2234 68229.5724 121005.9595 256037710 chitinase Carbon Cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 4394.8939 7781.451 16055.378 18537.055 2154.9311 3202.8455 6266.7419 3623.0969 3494.092 2285.3693 2285.3693 2469.4162 35856.2736 3500.3698 4266.0692 7541.8156 2295.403 4800.0766 13828.3076 1771.4546 2910.4824 3652.8846 2011.3464 211905647 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7757.8615 9675.5809 5351.1544 9195.6674 4607.4929 6542.769 7846.8375 15761.5999 5889.0197 215940.7189 8242.8443 6217.6869 5980.8314 4365.3857 4365.3857 3561.7181 15259.34 10423.7762 8296.1495 7258.4204 9685.058 5506.1552 5239.3284 11019.2684 3630.8681 13655.6326 17848.7502 9118.9053 3598.995 8297.6107 20541.3426 6146.0237 9016.0203 365858966 xylanase Carbon Cycling Carbon degradation Hemicellulose Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 7472.8299 23956.0819 75386.2605 5909.7366 18580.4484 8181.4554 192516.6664 7749.9397 4022.6298 6586.5087 10048.5373 12628.8535 6123.6645 6123.6645 6161.6759 28759.9352 11088.2526 14421.6152 25222.3998 6953.0218 8867.6919 8389.931 22349.5049 10502.7275 69257.1804 17209.2018 17318.0118 17638.0071 23714.6005 11776.0902 16112.4526 41912.8727 209498900 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 12768.7341 6030.0736 7910.291 26487.076 11333.5 10760.7043 14292.8527 32390.3523 17470.6421 25780.7492 6606.5881 229661.2882 14170.064 13235.2222 11192.0408 10645.2803 10645.2803 8413.0303 17306.1936 10604.051 7220.6448 11497.7384 13110.3353 5425.9593 6539.2039 15268.6044 13227.8498 24831.187 8711.289 19710.2079 8590.8437 8514.6657 9473.2231 8785.3978 14976.3861 153005485 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 9092.6533 4532.465 7204.0423 9869.1497 8856.9958 4039.9053 7181.1827 10679.8452 6875.3058 8819.4472 6036.2615 109611.5786 6430.8306 5827.782 19954.819 5434.3367 5434.3367 4913.18 13940.7152 8392.4568 6267.3052 11438.9 7565.5316 3875.8351 3226.4473 16359.5576 4718.6651 25903.1409 7881.8405 12214.7574 11368.5907 8959.9663 6356.1652 4664.4219 7023.3099 404257357 nfsa_2 Organic Remediation Aromatics Nitoaromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 494363.578 20080.8633 7154.7735 5115.6001 14178.347 8795.1416 6318.3979 5411.2448 8919.5663 9144.7885 28421.7204 150531.6203 5966.5735 5858.8832 14057.2682 6794.9326 6794.9326 4245.5174 13887.0599 6641.0921 4956.157 9339.0293 18231.6161 5234.603 8036.2568 9986.1742 4834.896 16305.6249 11229.8182 17590.2245 5260.5885 7219.8532 8284.0651 6891.3991 8447.4263 224520164 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 5383.2186 5657.2077 8831.0204 4155.9126 199644.8666 4186.9225 2149.1375 2149.1375 5706.451 5954.0473 3735.1173 206374.5302 11849.5239 2600.8742 5847.4409 3009.8012 10614.403 6823.9658 3602.3066 15822.9321 11314.0925 211757.9321 304312865 terc Metal Homeostasis Tellurium Detoxification gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5293.5605 5038.6231 12006.7919 4651.3413 3465.3581 4443.9319 5033.7722 171667.5947 5276.5247 7917.9884 2951.6718 2951.6718 4806.9432 12010.9749 7999.5618 7314.0489 7034.5597 6197.2485 3248.7255 3702.9555 10435.1229 3767.2346 15583.3915 8297.2362 26678.6316 3488.7007 4389.2216 5501.8599 3366.7598 8068.3186 284989771 amyA Carbon Cycling Carbon degradation Starch Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 14628.9777 10664.9749 6508.1065 9958.1434 2222.6554 8467.9148 4252.6469 12099.3369 10747.6783 8104.8012 145360.9417 9191.6643 11359.3359 6803.9171 11509.4609 11509.4609 6926.505 21110.6058 13670.4736 11414.8086 100516.1817 11055.2775 7432.2687 8833.3769 13418.4428 21726.9897 20582.0303 17033.8349 18201.4725 6738.1428 10476.0507 10339.522 7265.6653 14759.4779 70930914 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 303172.7897 13881.6815 38480.2742 11967.5845 32742.9753 12796.5469 18311.851 29533.9261 14535.683 29837.7094 32302.4028 25759.2684 1486438.9424 35195.9085 19820.0392 20520.4322 35975.5825 35975.5825 46896.9037 22605.1019 12411.3139 23739.9968 52801.5473 22183.6524 18924.5183 52721.2752 70845.1509 37140.6203 449667.0486 111578.2807 77979.9563 29044.9712 31865.6526 58812.0956 19955.2364 17016.0466 284028538 chitinase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 63593.496 34654.0715 5403.324 8327.418 8688.9338 5751.4722 4372.2267 9471.1028 9348.0203 17561.062 105394.9378 9720.7526 27488.1166 12999.8429 4592.4449 4592.4449 3140.3561 45666.0924 13206.2763 14444.0753 14969.4103 52213.713 8301.9805 7211.5236 11364.8818 11188.6312 18440.4762 5648.3739 11590.0579 6626.6245 8576.5253 11593.6612 5171.4927 5731.1618 187711185 catechol_b Organic Remediation Aromatics Other aromatics Sphingomonas sp. B2-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 19619.1764 12321.2172 17368.6015 11740.822 7479.636 43311.5508 4518.2525 7338.7392 16097.5958 12083.3071 276828.3525 15528.1449 24629.1484 6181.6581 6132.1605 6132.1605 13168.1049 32499.5275 11226.0184 19552.5157 16582.4729 17902.2645 15913.4743 7613.5641 22804.214 5927.539 35675.3056 43679.8139 15942.8305 49613.6277 14090.6531 24580.7019 8670.7519 21454.327 358063743 atza Organic Remediation Herbicides related compound NA Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7322.1589 10897.4817 15311.4317 5535.676 1976.5001 13748.5577 8859.4025 7872.6341 196390.9538 14989.433 5984.8736 13205.6627 6827.966 6827.966 6087.3613 28360.8584 7397.044 9328.106 63092.47 18205.6565 4292.8167 5306.1436 11046.9917 4689.8369 25387.0725 8812.2223 15263.7578 4307.211 6679.919 6566.4788 19394.1237 12309.8358 306980327 Sir Sulfur sulfite reduction NA Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6230.7733 3008.504 2274.7052 3496.8571 6823.6903 3866.5117 5067.258 3781.5204 2955.5503 6965.0174 4228.3878 4736.2372 9805.1539 6462.6059 2116.2485 2253.8643 5147.4189 10666.2868 6530.7726 2084.786 3039.5298 4165.0665 1953.7572 6120.9821 395499456 nitro Organic Remediation Others NA Pseudomonas sp. PAMC 25886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3982.0991 20268.8387 3930.3582 2131.8933 3849.7059 4906.0764 3354.9882 80042.1067 4901.1906 9754.2382 2064.5221 2064.5221 2820.9768 9500.5075 4567.6463 20507.8328 8358.7644 5544.5393 2362.2191 2399.6047 5952.7923 10365.4324 11711.0734 6582.6481 5737.1509 3140.0879 5122.0471 4219.3187 2970.9807 7269.5952 297564760 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 125537.4434 11007.173 6041.6254 14245.4178 79058.871 18502.1924 15593.046 31946.1968 8326.1205 20722.1018 20326.0965 53981.0222 407059.6482 29637.1287 70493.241 81624.4468 15220.4768 15220.4768 21178.4012 35741.2095 15499.9227 49451.2494 62439.7526 15293.9162 9625.5626 20411.6646 36884.7292 21736.7311 46337.963 60408.3578 27448.8041 9286.1185 10682.37 17885.9628 19295.9175 22286.7927 340532025 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 6944.7046 6451.9955 1050739.2083 9123.3447 5247.647 5724.535 5156.6579 41620.4935 6510.5713 11459.4424 7547.9947 111753.7635 11640.558 6170.9293 8077.8112 20789.9144 20789.9144 6194.5723 16405.5625 16030.0935 20955.1626 8535.5854 10155.3118 4742.276 3827.4841 59834.1139 161975.1639 29768.7263 39131.5597 53322.3501 4989.0236 6488.8613 10468.335 23454.2577 8524.2412 292654689 RgaE Carbon Cycling Carbon degradation Pectin Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 8935.7626 5945.8917 4916.0437 8515.433 8570.2016 7129.1468 6995.2597 87391.6251 17804.6676 7584.2504 6989.6476 6989.6476 6400.7219 11489.7453 4377.271 17678.2548 3224.2495 5585.1053 9413.9485 2749.3486 14442.6192 9564.5703 36472.3504 2080.9911 5530.3215 7249.7913 2702.4107 8077.3685 300442908 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 26558.4154 17260.0527 22989.9903 12364.5949 21949.3578 23733.4136 14345.6187 24916.7396 21088.8093 37636.3596 343245.708 39606.6953 79607.137 29838.2155 12015.4446 12015.4446 10014.1778 43031.2756 27429.8062 30618.6748 74827.1633 25120.2063 14792.815 31356.363 120197.3568 18308.6562 69324.0882 34178.0475 51859.3027 33094.4121 23196.0996 22239.6299 22183.4966 120749.0186 167070744 ara Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 63477.6134 12282.7561 406285.4999 29414.5719 7170.7393 8186.2817 19791.4717 3199.7971 12782.3056 17663.6534 10922.7408 376371.9194 42104.2186 25818.0795 30551.8832 26852.4624 26852.4624 51319.0627 27546.7548 13988.8289 10529.7147 18074.5381 21574.5136 21913.0287 20604.4483 19043.9068 19743.4933 34305.3264 17024.8743 22139.1557 12622.2221 14587.6081 13486.5609 16935.61 11856.8364 134099082 urec Nitrogen Ammonification NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 14233.4347 18238.4832 10078.2093 60717.9381 14081.1857 76963.2977 13167.5068 10577.6524 13081.1018 16531.6908 18951.7993 333026.4239 11555.1679 40797.283 46538.3579 30737.6542 30737.6542 25054.8328 29030.2968 12281.7161 52014.1971 50862.4358 12665.5869 13199.8292 25700.4433 46033.1563 17457.2806 32548.7734 35927.9467 56461.6055 8278.3461 18219.0642 32093.8956 18029.5279 25604.2331 92441508 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 40081.2574 38005.2494 36272.6479 40018.5429 31282.0959 8149.5303 27721.5096 20709.8897 15992.5322 61396.6174 33912.9263 20511.4324 790711.7808 47604.1635 37093.7877 40387.0876 21877.5305 21877.5305 151036.0083 54147.3056 137381.5279 32566.585 36027.8544 57012.36 29849.5902 16877.1432 56501.4947 17707.0791 71495.4753 38809.8667 52362.0229 19217.156 21904.2251 35030.1348 49257.8704 49114.1666 307719157 ara Carbon Cycling Carbon degradation Hemicellulose Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 68898.868 6141.1959 1594019.914 13717.4834 11132.5325 2422.4539 5852.3543 8394.1123 8890.1481 9998.0805 100234.1322 16069.6166 6447.3756 8171.889 140158.7235 140158.7235 13228.8894 25494.9429 9455.4276 21198.2231 14216.7364 12525.6293 26355.2902 9527.5757 8595.7314 11860.5455 19071.7169 23990.3968 38412.0994 16002.5171 11222.3017 8473.2661 5257.4416 13498.9394 380474299 cpnb Organic Remediation Other Hydrocarbons NA Colletotrichum higginsianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 32630.8954 39858.2941 20626.99405 22280.5535 15897.9602 9053.04375 53276.6368 15061.17045 33375.51865 17446.87845 518147.71215 22896.4795 23381.59825 18963.50535 15977.45415 15977.45415 14204.50405 27654.93485 20317.9656 23210.588 37573.4093 35440.37855 13965.85285 26383.23055 21286.5422 13435.67905 41404.43025 27934.55925 10434.7117 15293.7834 31944.8849 11669.10575 30925.92365 302490529 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 13581.9082 7972.8025 6759.3165 15904.3385 6970.9753 12887.9946 10451.2457 4761.8392 20285.3924 14162.816 6245.8597 211845.6026 16594.7162 30085.1807 13466.0446 6778.4405 6778.4405 7316.123 25623.7964 19817.7548 34380.3144 13670.9145 12449.6554 25602.9282 8303.0515 17279.4277 20489.6729 30130.0998 20679.5604 28798.2789 5749.2477 10629.3585 10016.401 12028.9477 34058.3485 183602920 xyla Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 5087.3896 2226.3819 2436.5358 6256.3058 5959.9465 2125.4056 2125.4056 3114.8534 7097.2235 6535.777 2546.4427 4102.2007 2752.2564 10153.9531 12051.4048 8412.0628 3434.315 27353702 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 32404.7029 3063.5463 7117.5428 19973.6147 5515.8874 11332.5288 3566.3615 3566.3615 5841.7717 150164.4489 4447.0329 7914.4037 4185.3202 5709.4835 8426.8472 10101.623 18869.6283 5453.2258 3704.3973 7872.5975 5640.6325 119392304 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylella shizishanna superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylella; 87527.2238 5071.3821 81698.2455 15679.1529 7408.8355 11470.2605 30370.3351 21791.3719 157835.6521 8638.4118 14322.6538 23837.2556 10368.1162 10368.1162 27661.0844 134676.0416 9890.1781 17612.9211 40201.6654 53634.8595 14128.5504 13991.4096 302669.1903 32956.0565 39108.1677 31975.2537 7244.345 16162.132 18993.2939 27238.5955 14248.1431 64051.163 145299696 napa Nitrogen Dissimilatory N reduction NA Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8259.0751 85460.9127 4297.8313 5733.5617 6946.0284 6158.1139 5694.2477 17834.6653 15324.1648 204373.1529 13361.8125 16807.7032 25210.5438 36775.0367 36775.0367 8010.734 23080.8874 13082.7594 9938.68 11907.3021 42521.0806 9371.4753 14042.6368 9612.1602 5670.9271 34544.6245 26626.7299 10512.0287 2145.4592 7349.6097 8153.649 4784.4794 10342.7267 78102121 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4956.71 10314.1652 9961.2461 3909.7505 3698.6864 2186.1819 9022.978 4561.5339 3656.7334 88869.2865 4262.1468 16586.6768 4198.8194 4057.0886 4057.0886 8433.2634 4107.1493 10729.0859 6978.2097 3117.3494 11843.2804 4698.7674 7810.373 2962.7944 3579.5901 9634.376 3297.5358 403205260 catechol_b Organic Remediation Aromatics Other aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 15323.687 11504.6196 14979.7545 34440.8133 13533.6653 8632.7942 6158.8291 2768.0802 14147.1404 10015.7113 16040.2826 228573.1146 12438.319 13184.8426 19679.5222 15999.4538 15999.4538 7192.2461 15619.9924 12947.5157 9463.7218 12201.1153 17819.2145 5101.8109 11399.4184 20268.4608 3553.3077 22145.2287 15075.9311 22018.9074 5199.2156 10322.6164 19317.3928 7393.5211 7453.8209 357045485 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 11134.5271 12033.8812 31293.0372 7459.1045 6922.8182 20139.4368 5929.7335 4316.8956 18543.2237 106514.7118 4213.3653 3558.5982 8114.116 4094.1532 4094.1532 13536.4416 11279.3797 8782.5309 6077.9856 4855.7721 12189.5168 6971.9986 6887.5518 4816.2672 20842.5647 4633.441 11409.8509 3834.0312 29961.3188 4658.5515 4584.5271 7843.404 114054980 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Balnearium lithotrophicum superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Balnearium; 8109.3558 15551.0115 37754.6479 7655.1805 6683.885 10013.9721 5533.5909 112708.4878 4642.9131 4871.0542 37224.7486 37224.7486 4641.2425 13934.5853 20738.3798 94548.0971 6335.1966 6225.2583 12086.3264 4362.0586 28712.2898 11726.0195 11676.2325 3298.1506 14223.6639 13423.0398 12696.518 19089.8934 2117031 rgl Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3955.6841 8537.7372 7785.1143 2202.382 3503.6 4248.2656 2777.2903 123516.27485 7567.6698 5699.17005 11680.3431 3123.4431 9141.9484 8345.16355 7604.0514 5035.2515 2749.82305 3568.15905 6596.05175 3093.2372 9650.2358 7350.48205 10851.3511 3211.1043 4000.2323 3462.84095 300102957 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 99051.8733 12667.8444 176665.7578 33078.0158 106138.341 92346.1107 38847.8203 602403.8468 116455.4459 79788.1455 237079.6612 161853.4872 7412899.9423 137819.3575 188145.3398 222885.8831 141300.6608 141300.6608 56789.7693 188790.2818 66173.6416 54397.466 691961.3226 59285.7069 94956.7623 69230.2745 88274.8093 125972.6275 149665.7667 111174.7312 131941.5534 85973.7474 85414.0107 96688.3121 46266.8948 89877.2538 373463199 ara Carbon Cycling Carbon degradation Hemicellulose Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 13073.3715 8071.1 9167.6096 47414.5678 6128.6152 13153.9575 6916.0169 11481.1373 8871.1751 234790.8878 12741.088 12777.7206 18044.6032 36439.1761 36439.1761 5008.3698 16987.2188 8956.4794 10011.5777 22405.9082 9667.8784 7156.6293 10883.944 28268.0494 48384.3959 18014.324 13690.1706 24220.5653 9383.6844 9742.5897 45982.3336 6432.7173 12797.8912 226363705 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 8943.4834 4483.3342 3630.583 8801.9177 9497.9596 4067.7573 120332.7661 12379.8862 6916.5001 5293.5683 3781.4863 3781.4863 4010.867 10696.7394 9132.2639 23509.1402 2898.6519 6192.1296 9055.8861 5655.0251 94160.7486 8843.4496 9823.2102 5459.0308 4097.3409 5033.9621 3908.6554 9458.968 88865152 amyA Carbon Cycling Carbon degradation Starch Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 51597.7078 27236.1918 4795.3537 38860.097 10002.6495 11576.8067 21836.0982 301569.9785 22963.9883 26735.1606 28616.124 244066.8608 30251.8448 22293.5767 24500.0969 9522.4049 9522.4049 9435.487 34020.1004 15789.6604 409508.594 24715.5809 18389.7319 13276.1429 35788.08 27868.6681 25564.8413 42639.5272 33720.181 26554.7069 9202.0578 19596.4597 17147.4127 12822.734 24216.6745 15806848 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 6157.5812 7897.1085 6344.4288 6827.2747 3477.7892 2428.2182 6860.531 13002.2028 11138.0478 102812.1826 7648.0992 8945.9477 8289.9981 4819.2728 4819.2728 5460.6513 11787.0112 6923.3719 6331.8528 16763.4709 5483.1474 7766.6799 4463.8836 9510.213 3629.9734 16939.3298 8768.3693 8622.033 3835.2542 11728.7829 6388.9145 4214.6224 11815.1914 151280005 vana Carbon Cycling Carbon degradation Vanillin/Lignin Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7731.5271 27585.4843 68230042 xylanase Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 6438.2014 6954.3439 6129.0344 8213.8201 24561.7219 3519.1254 2451.4673 5315.5643 7969.9676 4338.8669 173063.1593 11267.7796 5072.8689 7795.909 5386.586 5386.586 4736.9098 7958.4959 6542.753 5035.8249 11457.958 5940.3195 3991.6245 4494.5427 9587.2797 2677.6081 12783.678 7840.7016 9032.1908 3588.4014 4635.7965 5490.2862 3207.3822 5812.4689 366086423 amyA Carbon Cycling Carbon degradation Starch Lactobacillus zeae KCTC 3804 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 22808.1535 24950.5254 12752.04 8266.6649 20391.2092 27569.6479 33665.6756 19475.8463 16331.666 22209.9391 445514.9071 24688.2027 34870.4509 65754.1464 25044.5487 25044.5487 15468.2215 23666.6417 38101.6643 19128.9417 147649.4205 28801.9443 15602.8318 18092.2605 24403.6764 34383.1761 53282.6041 74773.0012 51588.9632 15402.5837 267648.8301 29398.0008 12395.8626 59598.1859 220913355 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 10939.1771 19702.82 17741.6357 6530.1822 8079.5664 6930.4956 6563.9747 10599.5138 5811.9456 168866.6231 9034.3645 14071.321 5076.4941 4514.6873 4514.6873 6937.3424 17261.1678 11256.0076 85996.0673 18003.9453 165833.4863 11535.3539 9936.9547 20389.5577 10372.1585 19401.0506 13289.2912 13775.8688 9370.2278 7489.6145 8930.0523 6156.19 17738.7923 196226253 amyA Carbon Cycling Carbon degradation Starch Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 28463.5272 20724.5887 17771.8521 44373.8366 26858.175 16735.262 17025.9425 14089.522 78846.6882 15476.8076 399690.9517 21384.9316 66521.1048 24103.2359 38254.1731 38254.1731 26836.4947 44132.8111 34502.2125 49451.1702 29433.169 25679.6296 24731.7542 16489.0279 22227.8039 30371.1789 54219.4917 30543.3846 52369.8835 16176.6596 26556.1946 35645.803 100979.6796 156749.8284 81176587 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25777.4046 16022.7777 6211.7046 12699.7327 8027.5921 4793.3685 11812.4586 12192.7985 10500.9415 80581.6913 112734.6459 365605.7228 13766.6829 13408.9675 16153.612 34586.5034 34586.5034 14893.3419 22948.543 14601.3621 14059.0766 278438.2596 24918.5738 8060.6276 11133.8555 37383.6895 19662.2907 327321.2747 39206.0278 45219.7902 75186.6067 18311.8718 27502.7036 7871.5455 59043.338 339732360 cellobiase Carbon Cycling Carbon degradation Cellulose Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 9403.265 34798.4216 3012.8794 2535.3204 2411.2 19399.2852 5813.021 5813.021 4299.0065 3578.3151 3198.89 343463439 cdh Carbon Cycling Carbon degradation Terpenes Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 33433.0956 7796.8719 4615.07 13538.3302 9410.8357 5737.3116 46843.5807 9033.0896 21965.5526 18426.8199 19150.6628 212691.0808 9950.8961 12950.0677 20427.7104 8342.9142 8342.9142 6026.9316 32221.618 14119.9467 14873.9504 16772.2963 13604.0374 17214.0702 8753.8854 13880.1767 8019.7401 23586.8404 20004.596 15159.382 10175.7617 17923.7275 14268.0295 8530.7017 60688.4389 365895611 pcpe Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 69685.4437 99291.7115 16840.8029 8660.1509 1872609.3531 31562.185 124234.2978 37539.3449 29012.5829 335106.187 76864.4958 291643.8699 31213.5348 49092.7934 91588.6789 51730.7819 51730.7819 130220.5824 99504.5635 95877.2135 36323.1032 206628.6487 45850.685 46811.9135 44705.5168 54363.9146 54753.7741 93021.2014 143437.8075 80966.6633 22941.2361 67078.5272 61046.3675 157522.1862 47269.4101 260437194 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 15180.2891 7408.4935 3282.7381 9758.8616 2155.7277 4225.4166 5278.1795 2321.5812 109494.385 8098.2489 5532.2831 2895.9809 2895.9809 5938.7044 16486.9824 6230.9473 6254.6289 6328.4601 9093.3848 2780.8638 2805.95 5117.8122 2330.8213 11275.8866 5329.9372 6004.3556 3166.5927 4068.5515 3536.3776 2931.7113 8806.3085 328921708 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6611.8206 3576.331 5638.6863 3615.4916 39684.0458 6895.5708 57114.4659 5898.0202 5407.9006 31374.2753 5208.8556 5208.8556 2536.9741 13879.5761 8824.1872 6087.1909 4421.6839 3673.7663 4866.8579 8496.2375 3829.3489 3707.5968 7524.9729 6400.4171 3221.5872 5678.3768 5527.9244 6962.8474 115388375 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 89013.4689 6343.7411 9428.5274 7515.9483 4475.9343 9330.5424 11064.8094 12542.349 10977.9121 205256.4843 8387.3813 9138.7382 6465.6533 10022.8081 10022.8081 7559.0158 26699.3418 26264.5201 14138.1378 15807.7724 15676.7666 66736.4579 13184.637 12689.5938 5789.1363 65706.4247 15290.4802 29909.1619 7152.9608 12092.0329 67921.5027 5708.9981 44019.2169 163962138 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. FALF124 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 12007.7626 7702.4135 4866.7988 4830.9247 3377.3718 8111.0269 5249.0255 5380.6832 3940.5526 1891.3692 1891.3692 3855.0684 9836.2226 5157.645 5327.6084 6069.0217 7327.0033 2068.2099 9909.0482 7690.2781 7378.8458 11113.958 7435.8894 5515.0337 3217.7073 8513.1919 12719.9622 3845.6095 12173.6826 169863180 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 6386.9242 6374.4013 5892.7513 7806.4208 9137.38915 4865.9746 6299.0909 10906.5747 3234.7823 81485.3826 5894.5764 10357.7921 17591.1393 3093.5249 3093.5249 4279.3222 231921.998 6635.5167 8362.2291 6444.2477 3203.6405 3503.0509 13768.4034 7874.9882 37349.5965 6043.90845 14242.2535 7958.8626 4917.3309 7808.0236 3739.6727 12385.3229 385210399 bphc Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11164.6617 7692.636 7644.4854 14516.6604 5682.9739 10329.1131 4816.5354 11844.0239 15328.2809 37225.8335 235133.9882 9024.9177 10830.7802 10529.7459 8716.4677 8716.4677 9216.26 16504.3574 11957.899 16575.8021 13120.3239 20888.7653 6004.5944 7457.8811 17046.1324 6640.1854 23852.4899 18174.8624 14754.8414 9045.9953 8590.9644 10254.9536 8424.4219 10451.0572 258528803 xyla Carbon Cycling Carbon degradation Hemicellulose Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 145175.3133 46961.8595 9510.8034 31105.1999 21374.9636 35672.7191 16914.679 22033.3707 8569.9552 39080.2763 9533.8094 368903.2786 12439.1616 17199.6646 32411.0079 16274.9567 16274.9567 9530.4228 42210.5672 12603.6843 6221.2543 20952.5343 9860.6849 5095.07 13270.4141 39148.3342 10341.4197 182709.2645 17626.9321 25417.6414 7532.107 16716.101 15024.3399 17920.5758 12803.0015 77869353 ppx Phosphorus Polyphosphate degradation NA Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 4895.6808 10211.8915 65425.3746 3283.0986 3283.0986 5066.2679 2795.4912 42505.3587 1833.2654 254466214 nirk Nitrogen Denitrification NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 9742.1668 20605.5987 7419.7953 7309.8717 5558.7888 21194.1721 3601.97 6955.4 17827.0521 42504.2045 1327408.5736 8369.3511 92762.9953 44390.7064 10725.7566 10725.7566 4237.4198 18618.0921 7831.6046 206392.2636 49221.4699 53436.2614 9411.1097 10316.5581 30679.7907 35758.6278 9678.9861 14007.2968 6828.1963 13783.5023 13640.3139 19301.1748 26042.0186 316255017 amyA Carbon Cycling Carbon degradation Starch Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 13337.9759 11218.1532 10542.955 11889.5042 5198.9103 13447.7095 19271.8142 3059.5339 13757.5276 13298.3981 11406.8151 171462.8067 10116.7562 10252.2816 15246.6434 19002.4175 19002.4175 10026.8302 57514.3685 7518.0171 8967.5314 13225.8611 11357.7235 11559.7729 11134.7266 15621.6074 11898.9429 26552.5889 157307.6252 23254.1371 8917.4945 17629.7143 17648.3411 6375.7363 23569.0068 323365892 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 93211.2858 79317.517 45215.7388 35008.5102 35260.365 2015274.6175 34204.2322 29460.4647 40936.1904 34115.1402 83155.1138 209401.9443 1018888.2687 43352.1325 43945.9255 109760.5668 45531.2174 45531.2174 72315.6518 36085.0672 24433.4099 59202.5033 138265.4306 32006.0688 13961.2774 20456.3155 45945.4872 31263.0058 58691.7901 30815.9764 251846.9844 17502.5229 24769.9364 135316.249 15276.6809 35606.3416 374104919 pcpe Organic Remediation Herbicides related compound NA Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 46947.7645 19110.4782 33380.8221 53306.6595 18842.3396 17842.8801 25979.4384 20915.8967 24022.7655 38142.2082 26181.0134 661072.6918 30936.1837 41925.2129 47340.4913 49798.955 49798.955 29992.2717 53078.8113 32138.9999 36117.2096 42500.9798 58217.7969 21784.5127 17108.4391 37302.3923 22345.2681 71916.5698 42245.1043 54491.7156 16728.8657 33851.0848 43849.5007 21072.1129 36031.4087 403402246 nahb Organic Remediation Aromatics Polycyclic aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 10536.8432 5935.4315 14999.986 4539.9759 4878.6924 2619.7682 4639.5742 4277.8461 128129.9722 6146.8362 8816.3709 15003.6067 7096.8255 7096.8255 3150.3231 6482.3704 5861.3736 6295.6641 3192.003 7117.1686 2416.7728 6818.0673 5631.5626 1870.6706 3961.5791 6078.7619 343463389 FBPase Carbon Cycling Carbon fixation Calvin cycle Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 5743.4501 14647.2772 8962.3541 6299.3948 4578.072 3169.6967 154741.5091 3673.143 9101.3541 13882.4629 4410.3239 4410.3239 2925.1472 12022.5414 7212.5764 4546.4953 6546.0144 15440.228 3019.5479 12446.3759 5631.5888 9195.3126 18273.3187 31097.8189 12335.9364 3899.2746 5217.93 8249.3949 12891.5511 6563.9989 326635602 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas sp. 206 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12089.5508 6166.7565 45438.2779 48491.2217 7686.9952 7426.6609 9122.0086 4898.3964 9116.3034 10860.0859 5104.6244 221452.898 8837.8056 77482.7422 12279.7864 6795.7083 6795.7083 7758.8043 17768.4919 10326.1751 16374.6726 14550.2187 17827.0319 8434.4686 8560.0666 15470.3564 7110.2022 25777.5381 11134.0904 16803.6484 6607.0225 7395.4168 8324.8756 8537.6296 18336.9045 240169491 amyA Carbon Cycling Carbon degradation Starch Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 11713.5113 9963.3279 7004.4152 11823.6569 16435.0395 5833.4427 8179.7041 5061.4671 8697.1046 11060.6262 5908.2326 379417.7261 15914.6256 9416.9406 8073.4775 4977.2698 4977.2698 9202.9249 17222.9986 12886.5255 12929.1708 16245.6049 22736.3448 6022.9635 6468.4559 17432.0227 6207.0525 21205.5402 9488.083 14026.8526 7074.8173 8668.1933 7081.2912 8145.279 18523.6122 269837121 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 130596.0925 27645.3935 64179.3613 572109.894 71125.7615 53112.7174 222329.9179 185995.7105 193011.8446 104158.8357 169294.4413 95191.1887 3096530.3629 122848.1979 133261.1335 150700.527 63181.9678 63181.9678 61640.0012 120886.5581 569818.2716 141135.7609 120130.1265 99770.6399 72594.2133 81717.3567 94496.9741 68715.102 256467.5391 845705.0983 111745.6642 55934.8014 75685.2084 95308.206 62704.4498 110388.8849 228015255 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4501.3837 21760.434 3161.0074 8210.3717 3580.0784 7315.1838 3711.7438 60815.8186 4054.2566 6407.7275 8539.9412 7775.7269 7775.7269 3638.0986 16957.529 6525.3252 7608.3717 22079.1221 3563.1027 8351.8885 2950.1454 8275.0849 5214.4893 8476.3756 3215.2516 9154.29 5853.0442 4982.483 291371652 norb Nitrogen Denitrification NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 7817.4116 5809.557 13607.2277 16198.5724 9887.717 3588.4642 4914.3171 11707.1819 2675.3296 2675.3296 292377.1125 9652.7447 6066.3213 10689.7311 11361.6473 14276.3226 3022.3328 9622.0198 3008.4988 16174.2405 7812.7938 9638.5601 18903.3273 4268.8027 4032.5476 3122.9572 307946977 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 7183.2609 5351.7073 7230.057 16987.9337 4815.0547 6109.6631 97982.081 6116.2199 6761.366 7883.1984 5645.9583 160749.4448 12616.4787 14613.3567 7643.906 5000.0968 5000.0968 6601.3801 17596.9 10406.3074 7134.8715 12129.481 10833.7136 5720.1266 6774.2167 13959.7966 6164.692 22977.2347 6930.9921 14188.8923 5745.1867 9038.4709 7072.1698 4788.2192 14087.654 76666604 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11699.9804 5971.237 6523.2449 10435.2906 8706.12185 12923.614 4022.3529 4022.3529 8081.4072 15613.322 13795.73 7491.3085 18417.58515 12853.1882 11287.4714 10473.32885 9421.22995 30246.1185 5436.87845 11495.08715 6765.50045 15174.3673 269139956 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 6548.8479 1737.5127 2236.5614 3122.8837 61203.8391 2771.4304 103182.6604 4001.4577 26778.1232 8238.5377 4373.9055 5153.8278 26787.1611 5551.3821 5141.6968 6837.516 2861.9648 9225.9989 6295.1938 10932.8478 4819.2667 6125.2481 9087.7268 3318.6521 114762419 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 7677.0216 4586.6281 5055.4595 3416.2859 2199.0084 2477.3146 44554.9302 129379.8255 5365.8415 4051.3937 2413.8332 2413.8332 9760.3217 11693.206 7199.7559 4622.5824 6179.1241 4010.4248 2814.7244 3921.3282 7659.5686 3031.8332 10854.533 11977.2105 4222.4902 3804.255 4395.4592 3721.3154 6426.4177 109455666 dmdA Sulfur DMSP degradation NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 130863.899 32005.9595 73075.2177 145437.078 230016.3569 97790.6637 322999.7162 102819.9383 40728.2816 79595.9523 84288.386 60288.8775 2687781.7985 97473.5675 151732.5382 177899.9851 128692.3064 128692.3064 79395.9558 118057.0312 90117.5357 69869.3904 647889.5294 96387.2746 53463.02 67928.6693 150630.0558 54423.0778 251885.0433 159862.3398 199477.6166 65654.2784 72372.6295 88404.7393 69868.7575 302042.9596 214031653 alkb Organic Remediation Other Hydrocarbons NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 16337.6027 24614.9916 8411.187 10943.0585 13214.8879 9245.2609 13687.8164 7264.6365 10890.9485 11279.7203 14859.1226 194444.0795 15294.2304 11595.7587 9606.0639 7590.7418 7590.7418 8171.3934 20209.7993 11345.1208 25147.2757 12954.0261 12412.324 6222.5129 8241.2421 16511.1145 6548.0786 23409.0744 6391.4412 16004.8386 7307.2629 9229.9567 8674.5488 7117.2709 18900.7681 218782822 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 78355.349 58806.1322 58883.2134 6462.4327 122195.9159 38574.3577 28811.6015 39016.9031 36388.6497 272879.4657 27065.7815 19142.011 47406.2275 13877.2718 13877.2718 20141.8726 123266.5886 9027.1999 23775.1968 24156.5354 5989.2311 28578.1781 22167.8877 18175.4867 17108.8892 28144.7557 26922.8991 18383.2724 34383.461 20768.5505 21230.6167 20705.4214 51015.2413 170767163 ppk Phosphorus Polyphosphate synthesis NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 6024.3476 26828.3335 3261.7628 3505.0084 3001.5676 6606.3924 8340.8264 86250.8287 22689.1746 3251.2669 18699.4263 18699.4263 2622.3514 8045.0984 4087.6761 5755.677 5620.4124 2691.819 5679.7679 3526.3805 10606.6714 5298.2582 8029.802 2988.0236 4284.484 4891.8761 2167.9732 5400.0123 257455880 terc Metal Homeostasis Tellurium Detoxification Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 4340.0791 2565.5043 2117.669 3175.1134 3899.0094 2467.6417 67737.0025 4309.401 4089.3652 3969.0404 7122.3238 4923.1867 3613.2977 5388.4823 2574.5201 2799.1959 8328.6684 10165.4952 5036.6171 6292.948 2529.3807 2731.121 3717.4998 2352.9541 7842.2726 227190666 badh Organic Remediation Aromatics Other aromatics Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 9737.5787 8340.2222 6895.1484 11903.1602 24487.3267 7103.6511 4551.344 9568.4732 12755.3411 16502.7116 108180.7458 20551.1086 14136.9206 18411.4981 31716.0117 31716.0117 12928.7341 18386.6971 13572.6287 8742.909 12052.9611 12845.282 4537.0551 7023.7155 18236.9831 7403.6593 59557.5114 11077.3799 18799.516 17601.5351 10990.4961 13036.3481 6366.503 14520.9152 89344921 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 9800.8424 17556.855 19773.8857 7003.1605 34626.8308 12749.9588 8156.2851 9213.1396 3437.8129 18113.7159 11506.2919 4723.1859 307682.9641 12705.1563 31736.9483 17234.257 16868.9368 16868.9368 6137.333 34317.3454 12859.7504 11722.3853 18791.7869 8384.492 5236.5105 7832.8121 115040.1349 4244.0898 26373.4118 21940.1372 16735.9551 6168.1368 8156.6681 14502.403 5520.5222 16219.3877 73762890 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6673.256 12168.0477 26679.1118 24090.881 3619.0774 4955.2878 4930.3163 5691.613 3637.0006 119740.2965 5384.0806 6295.1508 10074.288 6265.8486 6265.8486 2767.6816 5129.2097 5439.6552 2274.7112 3310.6681 12012.4758 2930.7563 13983.429 9644.2237 11316.8204 4076.1056 5435.1614 3583.1395 4261.198 66474955 cmua Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. LAT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 30198.5166 13429.91 18532.0842 17086.8134 22152.7762 10158.6709 15756.6145 24612.4382 7546.0074 15170.6787 18444.1623 10978.7275 469467.8131 19992.6187 29296.7401 19551.1227 15145.4003 15145.4003 11682.9778 25022.6113 14173.4557 20079.7419 36039.808 23030.5076 9555.9838 6368.5052 21549.6275 13403.4317 55574.2536 11790.7489 34701.7393 11243.6328 10985.8652 13393.4952 8124.288 20451.9755 374623295 pgk Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 27444.1248 17943.2741 35886.4071 41914.9194 6967.4408 93129.6537 25062.8533 101198.7938 28003.0989 20758.3022 28229.5186 310994.5585 21215.5593 23269.7425 26819.1813 37064.1081 37064.1081 13098.949 41528.4865 12285.7416 23571.0687 82183.8143 41056.6102 16190.3819 13103.9734 21048.3406 15773.5624 46763.5033 32521.9112 23283.3528 19402.2198 37892.8125 22482.4984 101541.4427 34880.6878 145225541 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 4653.1703 8002.3208 3559.4934 3630.3201 5689.7299 5061.5539 160080.2156 3888.1653 107625.6284 16773.2623 4302.6971 5189.6357 5189.6357 4290.1733 4679.2249 5821.3453 8177.5432 15994.4949 8419.9342 20587.2507 5826.8113 192890.9865 3932.2783 3709.4355 28222.0038 3678.7669 322398205 TIM Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 69454.0692 18205.1056 49430.4525 32004.6573 9127.6712 25454.0902 50160.5773 58401.6955 29685.237 43845.2855 25219.2611 743874.2609 40945.8474 50281.4398 37320.3662 27572.1398 27572.1398 25340.0696 57826.9587 35311.2684 37808.1128 40517.177 49950.2738 14118.0646 20177.327 39403.3916 20487.8212 62075.3731 28204.7271 43737.1465 21761.2898 23964.8981 27604.8777 19544.7029 73182.9575 148254289 gdh Nitrogen Ammonification NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7463.6554 6844.9292 3575.787 2855.1303 6929.0253 12980.3975 4399.1107 74113.0499 5725.3981 6307.4196 5427.1674 3797.5249 3797.5249 2897.617 8227.4382 6976.8992 6965.8491 9449.1567 4772.9551 3506.7912 4545.8139 7559.5309 7293.2917 14780.6538 7270.9278 9342.4239 4399.9659 5216.1153 4426.49 3671.9562 8065.3762 158307668 b_lactamase Virulence Antibiotic resistance Degradation Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 8402.7867 275748.3032 2322.8438 9759.5186 67307.8968 2714.0598 2714.0598 2733.1735 6758.0306 2532.7157 5494.8879 4655.8719 5110.837 333749131 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfotomaculum carboxydivorans CO-1-SRB superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 6957.2857 4392.0296 15002.4023 4667.3914 8647.3992 3480.6023 6207.248 15392.5321 8941.8684 175305.6668 10476.2242 6985.8248 9647.3177 6782.8339 6782.8339 5355.612 13578.2448 11850.8819 18927.4343 144396.8435 8351.6602 3016.554 4717.1887 16113.618 6269.884 16159.493 11246.6004 12947.4221 6087.2828 12123.5986 9421.1789 21305.7876 9355.8543 339479084 cda Carbon Cycling Carbon degradation Starch Bifidobacterium breve UCC2003 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 29324.8191 78641.9776 5628.9504 3967.7723 8260.2042 6941.9861 30624.2432 30624.2432 6254.8189 7410.6225 4380.7108 6062.2412 1895.5459 3862.6153 21397.2338 67919377 nifh Nitrogen Nitrogen fixation NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 13266.7996 7428.2794 7938.1186 7815.0051 3541.639 4936.319 3697.3316 66730.6439 4638.6332 5002.5166 4839.8573 4803.2647 8291.4436 7003.6504 6712.5775 16198.6961 10777.0531 3613.3212 3934.3276 8714.5072 7565.7504 21482.1834 8467.5783 6770.5309 5305.5831 4554.2884 4265.286 4237.9686 7078.2293 330980042 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. aptata str. DSM 50252 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 5809.0294 5923.0396 6227.6954 4013.6095 2380.3403 4845.5134 2595.8253 78778.1003 6088.8487 5047.9191 2544.2266 2544.2266 9327.8221 6565.5976 12294.6964 4763.6876 3319.9945 3510.5739 10384.0163 3676.2719 19245.1309 6859.0153 9618.5743 3609.3131 4022.6746 4687.382 4546.1288 6915.4763 18312596 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 16980.9813 16402.5727 16658.8658 20915.7502 16609.7634 18012.1619 10128.204 16672.3293 16312.2557 7338.428 581099.5646 27008.6301 24753.0829 15077.642 9883.6762 9883.6762 10582.4181 26699.1917 17364.3163 21216.9065 46732.2069 19782.8973 8800.5095 10126.0124 22148.9234 8828.8886 63196.9346 22649.4578 36814.8657 11443.827 10556.2913 29443.222 8483.3365 23890.1668 110668448 glucoamylase Carbon Cycling Carbon degradation Starch Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 5180.9202 2439.2429 90106701 catechol Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 42683.2424 40312.1922 14023.6221 9651.6344 83091.8403 20282.3139 9823.2947 20968.0923 51406.189 33935.6258 449088.1494 18636.0373 35009.8697 52121.3385 31516.6648 31516.6648 16689.4486 23520.5936 24142.9543 47042.1478 33374.3073 16775.8038 26981.9536 19847.667 64943.009 28475.4021 26031.6424 15172.7797 373362.6271 119954214 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 603488.3548 27138.8467 251823.3604 115680.2783 296170.29 231574.1089 154780.0997 222921.3251 136662.0388 379085.0215 205257.5771 170767.5845 7393351.3256 142802.8443 285261.372 237816.7355 169138.4801 169138.4801 162604.625 237023.3175 123150.8093 125271.6416 143767.185 632263.1733 81770.4346 109561.3723 252948.7078 246451.6988 392676.5208 322458.0073 247124.0273 180991.6083 428846.2853 182858.487 126294.2015 249926.9053 302384189 amyA Carbon Cycling Carbon degradation Starch Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 12523.9465 10510.5717 7635.5367 27906.0091 63647.6804 22550.8689 8202.8805 15335.1797 14159.6449 17151.1627 13503.6832 342104.2495 26521.3033 19180.5506 32135.1903 17973.538 17973.538 11228.5044 34297.2151 28756.9572 5246.5738 16745.8357 12468.0186 5949.5281 12656.5617 47218.7506 11685.9313 49958.4334 35371.7798 36532.1078 17344.1105 16001.5994 10249.1879 6260.6493 10496.2599 62003583 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12661.9127 9098.2173 5614.2112 4044.4932 2749.8838 5587.301 4882.5333 2998.8768 251656.5296 18702.4016 7483.9531 6807.3871 39905.842 39905.842 3706.9035 13174.7792 10472.2373 8054.3388 49399.1874 5499.771 3650.894 10661.1236 4245.3496 14941.1383 6767.1949 12844.2628 5223.861 7730.6385 4617.6548 4689.9243 8680.1873 39648700 hbh Organic Remediation Aromatics BTEX and related aromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7810.3493 5817.7078 7918.932 105539.9831 8677.5767 5834.388 6128.0468 8361.8421 6930.2219 113159.2204 8297.1782 12626.4804 19011.508 7853.2341 7853.2341 3778.9216 31083.0124 5697.0196 11936.949 16799.5517 7647.9319 4640.4951 4950.1646 40005.8307 40868.9003 34573.2191 12580.0101 18110.3052 6384.9077 13357.4027 6599.5478 4365.2431 17990.4201 1754623 xamo Organic Remediation Other Hydrocarbons NA Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 42280.9992 9335.8287 13122.817 10444.1558 16813.3054 8366.7696 13976.1434 11548.8925 19292.0318 7990.8938 319138.2032 16439.7066 17964.9172 12911.7804 21388.1913 21388.1913 11477.6672 27268.656 15816.0707 471380.2499 23166.0939 26660.5329 14684.3986 18034.5299 20034.0883 7098.593 34132.206 25709.4521 19109.8374 11468.5342 10996.2392 10088.3994 9854.2293 27849.5509 116626798 pme Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4421.2535 23825.1146 13510.4884 7158.351 3005.7637 3669.4422 3121.0247 8938.8114 3205.6913 127585.9865 5459.0811 5152.6328 5607.1575 5607.1575 9922.5579 5759.4232 13611.3645 7842.2349 4562.1619 3668.5552 10042.2619 3376.7181 9273.4567 6114.7719 9145.7636 2938.1064 5245.2394 5411.47 111073803 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5780.1199 6227.1964 5922.0758 48142.9209 4746.2934 4530.4439 6727.9354 2930.4181 121373.001 7937.2437 4342.855 5148.2166 3438.4327 3438.4327 4628.5378 9418.9963 6957.4901 7856.4096 10579.0546 7165.5865 3832.9798 4110.8715 9530.249 3497.8488 12819.885 10603.1924 9719.3631 5727.6642 8232.4903 5228.9617 3302.2758 9927.2713 77378585 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13008.7376 13768.3143 5559.7721 2363.8495 5571.6502 18493.5758 6153.4587 385057.8247 324188.1874 5803.1098 7115.4539 25829.2032 25829.2032 3605.1267 8835.328 6606.4399 25490.6387 12745.6105 3398.2409 5138.7485 8993.6329 4152.0585 10804.1598 9348.1325 8158.6781 2989.6361 7153.6314 10810.6781 3203.9725 371650884 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 30378.9868 34843.1946 31336.0171 13252.6423 29210.7105 153923.2583 18461.1123 17183.0639 31864.0355 11378.5118 17231849.8964 27613.6972 26512.4077 26621.7132 12446.5402 12446.5402 150440.5798 38073.8616 29448.5917 505043.8165 31628.0128 39601.1748 16986.0773 14280.5866 34285.9462 11070.5298 53753.1093 31230.0037 37478.3643 16850.8826 20632.7982 17669.9737 14754.6367 1174075.1018 219949992 ppx Phosphorus Polyphosphate degradation NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 242282.1044 385946.7794 46651.936 55307.878 28375.0534 46765.3007 43985.4933 34274.1445 49024.8206 142835.3235 80853.1618 1567841.7657 64639.9126 141987.8466 168614.9788 135570.1784 135570.1784 55921.5254 225290.7581 43214.0307 92948.8808 139184.4321 42774.0716 58739.3577 156367.2605 193424.9798 98375.6872 361680.2365 157076.384 219626.5306 49665.4318 80133.8024 83772.2594 113297.3362 138518.2403 383767418 cellobiase Carbon Cycling Carbon degradation Cellulose Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 23592.619 13891.1196 12865.6208 22011.3652 9491.2724 88437.7878 14441.44 8412.001 12818.3736 24893.9886 15622.9411 461808.191 23443.4277 26957.8789 17657.2382 13006.104 13006.104 11981.0943 22896.1828 20212.7483 13516.4838 14734.2508 15551.9998 12659.6001 11922.4676 26102.3942 7160.1277 42592.0941 25195.6694 21529.0838 9558.9447 13237.0182 12854.9824 9054.2999 25215.5292 88771700 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 17413.3764 444760.7231 12957.826 12721.5694 9250.0602 6067.9974 2449.4591 105936.5324 5100.461 5061.3647 1805.893 1805.893 3643.674 6147.5117 2332.8112 2230.5 6926.5492 3242.7089 16979.5363 7431.8124 6582.9588 3319.2019 4100.0182 2691.7454 82409583 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 6039.0158 9716.216 2694.4424 4914.9959 2711.0925 6619.2315 5844.0596 2931.1133 140466.7092 4831.36 6047.3567 4034.3379 3289.9997 3289.9997 3818.8899 9288.9621 6299.4673 5577.4473 9040.6016 6184.4409 3202.4835 4193.8619 8897.7296 2383.8097 10927.0818 3822.1248 9335.7677 3976.7417 6425.4588 5311.5658 3213.1076 8994.6226 33863778 PRI Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 12851.4222 7722.8277 10453.5266 11325.799 7392.6307 5750.0247 7187.2933 7986.2706 8353.3755 5187.4104 194858.0327 9481.3658 8995.5085 5520.8421 4581.7277 4581.7277 7021.3944 15226.7745 10452.0974 9122.3187 12485.7397 20497.6532 4004.0879 5486.1797 15930.7967 4659.8198 17532.9727 14015.4168 6130.8133 7157.5134 7087.2176 5967.6284 11946.3442 145295302 tfth Organic Remediation Aromatics Chlorinated aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7461.149 5547.74 10820.2146 8634.389 4766.258 3434.0461 4866.5889 4847.5828 3312.9004 128265.2816 6780.4749 6731.2429 4871.7661 2444.4823 2444.4823 5323.2868 12957.3353 7651.1341 8748.725 10524.2751 9971.3471 4096.7965 4873.0015 10215.1315 3402.2275 15501.4315 5068.2882 9072.3731 7069.0274 4694.1638 6330.8258 3933.9519 20659.0321 223585858 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17443.5007 6926.6221 5792.5674 20729.0279 7039.8304 3507.8284 128630.7791 10055.3164 6853.4418 10173.5564 11820.6002 257988.5406 8727.123 7932.1184 6596.3078 10565.3434 10565.3434 6016.6205 16533.1086 21615.3014 6411.6963 15640.982 22337.7606 5862.1644 8217.2691 15929.9545 10819.5708 27774.6452 11387.8561 22721.8177 15772.9766 7148.3467 36233.131 6376.3656 10278.7386 3080753 gdh Nitrogen Ammonification NA Trypanosoma cruzi superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 4378.8642 5303.0946 3633.338 36616.5008 90179.776 4265.303 9929.0612 5562.7907 4859.5247 5908.3143 26560.3284 3302.3536 2676.7813 6700.7865 3384.3589 11105.0923 4229.4753 8203.7491 2650.3826 3313.3854 3485.8636 3505.1721 6678.0814 288925284 cda Carbon Cycling Carbon degradation Starch Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 15810.0869 9025.2651 6035.0998 15999.1578 11523.592 10333.9518 12346.5776 9667.2919 10491.6688 13367.1244 14210.1214 199598.8074 21910.7737 12080.4714 22536.8695 14208.3756 14208.3756 10033.6246 19953.6479 7792.5848 39256.8919 35589.0659 32942.992 5352.299 11350.2562 13588.558 14217.9153 36066.3195 13230.6116 14079.8262 10481.7735 10909.5109 10611.0145 14479.7052 13453.5304 240167790 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 236309.0265 11506.9239 32165.2729 19734.6579 248675.2545 25222.2129 58382.4194 37112.062 54218.4193 49994.0912 92845.2654 78966.8175 1550074.7943 146512.8375 200240.2512 141485.43 64498.675 64498.675 35080.8391 129444.2721 151080.051 47874.8876 99425.9526 31228.4416 64804.0687 53774.9054 67600.6104 97211.8343 201287.0838 134672.9729 112266.8659 44312.3695 101480.2879 207014.0913 37460.7381 36422.7425 116611965 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 41071.0771 205648.7611 13238.0722 42398.0731 9117.4462 11572.8357 54309.8508 10391.7497 12684.8242 30153.2039 11782.5039 682937.4692 22654.3299 43705.2562 15057.4668 16544.4197 16544.4197 16160.5202 34908.9683 28400.0529 29541.563 238011.2254 27679.9037 19792.1832 15970.2828 27920.2125 27956.1613 41171.9457 30206.1549 57488.9355 14284.5526 20140.0154 16401.2347 10849.7856 26694.7156 134080742 mer Metal Homeostasis Mercury Detoxification Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 86394.619 5639.4056 11625.7896 27833.5208 9980.0839 182221.3699 62093.9892 18351.8418 19163.5185 91735.2773 55348.1568 726379.2614 18302.4031 135477.1061 22615.3707 24457.3157 24457.3157 18451.7353 33420.349 13521.8232 37017.9307 58201.4802 293751.7686 78724.3565 21644.1475 70313.0073 56527.4568 351533.5866 39942.7679 91250.325 20049.7946 56271.1197 57744.921 18974.0711 35497.0125 92431303 catechol Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 20224.0402 22751.878 11639.3983 29983.1689 10276.2791 14088.9715 36319.9299 10760.8351 37497.8527 39974.8007 22972.413 737718.6796 26229.7748 21136.1039 26297.3395 41331.7879 41331.7879 13833.131 78806.1559 43009.2476 32408.9221 173266.1249 29748.2274 32587.4237 28296.8823 48367.4725 53435.0629 152615.4578 47456.1036 63665.3767 22859.0688 28650.107 42415.3749 49898.9678 32867.725 284031583 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 316784.1496 28888.34 163016.3837 181071.364 93465.8458 52790.7478 150587.203 228539.2443 109775.3952 129126.6275 128521.9342 109298.2328 2783215.1393 226285.414 184081.9399 191820.8672 173564.852 173564.852 104114.4429 331971.0098 87776.1854 327233.3022 228673.8002 415747.9525 378026.2548 228925.3583 104550.9045 93256.9919 323643.0727 125248.8353 178788.329 154012.6758 136299.1678 161777.7383 70516.0751 799925.0765 55378699 alkk Organic Remediation Others NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 23968.3798 13314.8922 17185.2434 26192.7253 12033.8296 34147.1041 16298.0036 16672.2954 20021.777 13355.445 9013.6816 231083.048 20004.0437 16670.184 18956.3983 23092.2811 23092.2811 8248.0282 21661.3279 15006.2014 12136.8994 20327.4685 18898.0019 15197.2742 7504.2775 19595.6194 9424.1102 30359.4243 16714.9697 18684.465 14242.1102 9775.5879 10494.4068 9718.223 17535.7547 209522393 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 64857.4133 20420.0671 24693.1061 13351.1951 11377.31 11433.2677 13984.9943 10900.6005 41382.1788 20340.1581 24208.2683 272182.0247 21691.5275 14291.5927 13310.1042 8957.9589 8957.9589 16285.8191 23792.3978 25427.5476 15178.4756 151040.1852 20413.836 13023.4975 16827.486 20868.0806 13932.2518 37548.7667 33188.0658 21451.8728 10031.0936 13746.1498 13524.9008 22238.6994 28837.7904 164455296 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4992.8485 7527.7647 2088.9606 1978.3331 2788.9243 7977.9461 8869.6842 163885.9261 6759.1726 2309.2186 2309.2186 8149.7292 6164.7703 3954.4418 9518.4602 8886.6246 3318.4004 2648.492 5157.7799 4341.4602 2975.5998 3637.7773 2165.2136 374620194 arsc Metal Homeostasis Arsenic Detoxification gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 41290.3048 22879.2806 30961.593 32356.0633 34516.9731 6292.9979 44418.3807 32045.4857 27684.8794 48305.63 48626.4544 21431.8542 863853.4893 44209.9626 74392.0344 198587.5568 23424.8924 23424.8924 25034.3403 61438.6514 37105.4146 223809.8711 42777.1187 55979.1137 24918.8546 35071.4612 41796.971 29921.1117 89049.6105 22210.5572 49985.8663 23230.9926 35851.2487 43803.707 28529.6305 62570.6301 159893888 cda Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 29519.8537 100997.6344 102210.0748 64258.1682 9694.2448 8343.3462 15793.6059 26552.3511 47151.255 17929.43715 83814.6591 459843.8275 25879.6594 36504.3836 45474.5103 24842.5866 24842.5866 15318.2987 28334.9382 86657.8308 24014.2959 31948.2182 39781.3383 16832.0379 44103.9928 19683.8931 46637.2817 103255.5106 41037.81 51670.6598 17729.3698 31155.6124 32466.4471 154251285 tfda Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8806.2549 58553.2176 7325.5261 3917.233 7702.6072 3086.3608 8158.5478 10453.1512 71960.3737 137719.9095 13796.1129 8700.4451 23131.4005 7705.7535 7705.7535 9268.1873 14472.36 13340.0651 11067.3338 8971.1301 9234.6595 6296.9304 14658.4781 19961.7919 27288.3181 35377.9154 29023.0541 20681.1367 6612.6287 10107.9448 19671.914 21777.2442 8412.5172 406699014 poba Organic Remediation Aromatics Aromatic carboxylic acid Trichosporon asahii var. asahii CBS 8904 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;genus:Trichosporon;species:Trichosporon asahii; 8851.7872 4806.8146 5091.802 4318.1514 3824.859 6395.5193 7726.1772 2849.701 145466.3812 7188.439 5103.5721 4432.3298 2963.0018 2963.0018 4603.4886 15388.4307 7974.4202 5064.5026 6206.9506 14794.4047 3334.0207 4687.9926 11540.1935 3738.7536 11863.6992 4778.4488 9416.9618 3488.8759 4049.2291 5138.1512 3596.4834 10714.4552 374327258 APS_AprB Sulfur adenylylsulfate reductase NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 78199.6159 12144.6119 14272.301 13214.5783 9117.864 12236.5449 17763.4776 7226.8268 24977.8707 20586.4357 33612.1416 385894.9249 25799.6419 28829.6419 38934.0855 13932.8526 13932.8526 16768.4007 37895.9894 23187.8819 36663.8535 37132.1498 26552.4689 62599.0046 11874.875 32102.964 14732.2801 60725.7094 25567.2901 43829.1679 15683.7752 19804.3359 38088.8835 78845.8466 26018.1846 118435649 soxY Sulfur Sulfur Oxidation NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5301.504 16044.1998 37494.0865 10362.8073 3069.3648 6199.0011 3746.9583 6245.9536 4073.7572 154442.0408 10452.7387 8192.1437 10108.9252 7039.3553 7039.3553 4663.8848 8232.3029 60838.1275 3187.2156 5365.7741 23217.0739 4362.0455 20897.512 16536.5802 18256.0532 6991.3751 7825.6753 4207.3698 3268.3704 156857677 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 5007.6666 8649.9894 21516.2113 2598.3792 4756.8885 8319.8136 9132.234 5645.3006 5525.032 135430.1519 10014.8736 10127.8875 6237.7446 9377.0179 9377.0179 8217.5539 10136.9686 10519.4113 11772.671 6143.7026 10561.976 4116.5865 5929.134 12032.0452 3740.8059 14470.0749 8442.6777 12921.0848 2925.4845 5395.9057 9840.3419 3965.2058 9784.2282 87302500 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 28029.134 33316.658 10642.7682 63818.3069 10306.2623 13279.4114 10948.4227 5627.8842 14724.9455 14628.3142 19407.1931 280801.086 19513.1711 17686.0931 23202.156 13849.9008 13849.9008 11959.8443 73113.3779 30765.3441 30463.4088 46348.1963 18085.0497 9348.6261 12431.6768 21371.7801 6912.9634 75871.7739 21803.0796 83044.2101 22087.7179 16419.9232 23628.5638 8619.4307 14559.8123 76577386 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6170.646 10200.6053 3090.2625 3904.9621 2365.1544 4578.6684 29110.9934 9090.1973 95843.4153 5021.2804 5306.5285 8787.555 5052.6679 8812.3851 7621.3929 7543.3484 2520.9736 4779.396 8231.0043 5720.8381 17110.0465 10055.5308 4561.3749 5820.6221 4767.0623 9835.4907 9505.7641 92911379 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 26874.8746 10985.5589 16491.5845 35550.796 9480.8791 16721.5459 24276.5025 90333.9175 19408.7588 18606.9111 15649.3043 520533.0539 53581.8285 341528.9015 18604.9012 11456.9663 11456.9663 17979.8483 40944.4752 23749.8639 31038.6659 27269.5547 24602.9443 22579.9842 14496.1849 31478.9678 46178.3856 55186.1568 26061.4667 56993.1139 17539.7519 73036.5027 26206.8479 18162.6635 28362.2371 52347573 Sir Sulfur sulfite reduction NA Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 88915.2834 96382.2546 104231.7471 8725.7403 18121.6598 27581.4515 13666.2375 47989.9168 20179.0628 37385.3047 30101.2182 37751.5966 639925.7581 35172.7978 45756.53 46062.6822 88545.1437 88545.1437 23119.0111 152690.295 32075.6125 55356.694 50674.6918 51691.8003 16819.0364 27024.332 61190.351 25323.6533 114464.3821 53566.3623 39477.6064 10872.0254 33660.1948 27737.886 26202.9986 32412.3798 342316518 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 583136.4787 16578.7125 26509.1503 45331.3726 17937.5121 22873.6938 19744.3441 13983.0691 28528.4439 35196.0252 24378.5462 673097.7898 27883.1077 27267.8339 61643.2374 33376.7754 33376.7754 15893.2351 31524.7287 17559.9051 25742.5432 46481.5199 18933.2991 19189.4801 25446.2047 29289.8242 17971.4254 68439.2912 30563.5222 32269.729 15065.0644 17935.3247 23323.6683 19059.5645 52318.9117 403722670 catb Organic Remediation Aromatics BTEX and related aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 214540.3881 53615.1651 171587.9299 20251.5603 73674.1679 48496.7235 166738.5792 62339.9364 116571.557 176391.8463 130813.4229 5130789.774 156130.443 144353.1877 183293.6306 122564.0012 122564.0012 49412.1925 129559.1815 86952.8675 188717.078 131403.5259 218479.1027 110162.9208 193423.2436 112635.5045 70077.6768 726317.3119 149767.0339 165571.6256 118047.7266 148257.1646 162931.3699 91288.7129 306766.5901 41406792 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 4800.5058 6906.5742 2154.0613 78838.5582 3567.8392 5118.1462 4805.5319 1973.953 5583.3088 6160.1961 2102.6248 4843.7646 398088945 pcag Organic Remediation Aromatics Other aromatics Rhizobium sp. CF080 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 20238.6204 44898.5768 54101.4176 94603.8961 18122.555 15195.9892 19404.3812 6063.7102 18006.7509 29449.6576 84059.2627 454772.5922 25464.2686 37388.7744 73699.5321 27215.888 27215.888 12717.5127 43253.5708 22885.6788 40095.8098 23312.03 55230.1569 15532.2731 19368.633 52783.3899 43109.7696 727954.7424 36229.7679 39525.0849 11869.2263 44595.5525 38246.3855 14263.9454 30518.7387 357006282 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Paenibacillus larvae subsp. larvae B-3650 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 5535.1177 26141.5917 7724.5239 7846.7687 3250.5568 2474.5578 3513.1138 3561.393 6141.6327 2309.4485 220478.502 6058.0458 5047.7148 5285.2192 2054.2958 2054.2958 4154.6647 8415.54 8307.8508 4854.7431 4688.4485 5733.8445 3435.3473 3704.8796 9847.8382 4132.2523 12081.5384 13032.0849 8473.1246 3000.0288 6787.7984 5131.2768 5113.4489 6803.4757 308213085 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5720.9773 10284.8075 10188.6947 12657.7371 5276.855 5789.3927 6581.1394 3618.1408 35224.4903 7008.0913 5809.6956 931716.2836 8164.837 11994.794 11531.1691 11875.3612 11875.3612 3463.5307 16328.2287 9714.2919 7958.3832 5780.7784 6968.6393 5491.4345 4701.0759 13109.0199 5476.8803 14387.9542 8553.626 14628.7281 5723.5027 11076.9006 6441.2658 56033.3097 13319.1181 300390362 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 15371.8122 10736.6355 17370.0176 8213.7703 19114.9542 14058.2761 9718.9278 20379.2517 18518.7781 10284.3601 445209.8503 12965.5894 23284.3897 15962.2188 11006.355 11006.355 13400.734 19362.0569 16156.8807 18332.8149 25241.3355 21002.5994 9053.8207 9728.3516 22838.4237 8607.1262 35003.9283 13250.8023 22383.6798 10286.6719 11981.3151 13757.4758 8075.1979 28746.3617 385791671 chitinase Carbon Cycling Carbon degradation Chitin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 41165.8247 25508.1796 2237.5524 3665.6119 6934.0258 11232.3585 4903.4762 11270.1693 8554.288 2754.7301 2754.7301 15313.4539 29790.6648 6053.3009 114004.8313 6088.8828 4437.1632 5442.8069 5188.8633 14992.1498 4166.9502 16368.8622 6786.9798 10748.3886 1896.8681 5984.4159 7476.8714 6804.6141 5558.268 116266954 cysJ Sulfur Reduction NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 17028.9788 8311.1633 4836.0723 2724.0274 8717.3478 2039.0242 7669.4813 43300.019 13678.8148 24206.9557 31129.9945 28503.1227 2944.0214 2944.0214 3697.7922 19453.4496 6810.1091 15850.0995 19304.6607 169627.3995 6327.4967 8416.8369 13918.3073 12575.1001 13317.6552 13510.9925 21195.8475 11923.4036 12066.2272 40797.9678 7618.4243 11316.6945 189208606 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4861.4987 4996.9715 11487.6565 8744.286 3456.1426 2932.6829 128980.3648 18178.0504 11400.9079 4799.709 4014.0126 7091.2376 6565.2443 6827.9522 2455.1003 6954.2558 7078.5326 3147.0464 5398.6545 2901.3318 5253.2898 148830818 linc Organic Remediation Pesticides related compound NA Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 564941.4062 26242.6794 22244.5288 53525.7923 4827.9126 20632.3659 357574.8364 22003.5467 33735.3047 58855.0655 31867.4413 1934665.0879 125055.4681 46899.1779 44607.5343 36449.9717 36449.9717 520638.6943 99136.5376 46872.3468 119807.7684 56337.6218 654429.1306 38151.4941 24654.26 46099.5858 35287.1411 77116.6075 54189.6524 60898.4151 23991.9719 85507.5785 35362.9498 249653.2582 50505.572 158138865 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 101435.6852 17073.305 24502.0009 13940.8251 84494.7196 23002.1667 686677.346 52164.8696 41786.1298 27473.7058 70452.4362 44506.5901 820100.1793 46412.026 32235.0993 90981.918 51410.2154 51410.2154 17036.3408 53674.3775 35535.6177 15204.032 32192.2696 39153.3656 17109.7646 31565.2714 89474.8044 45908.274 190867.0957 43650.5988 42349.4945 25184.0533 33741.3182 88071.8775 17740.0391 23840.2134 163644672 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. enrichment culture clone RC41(RCRdA11) superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 3984.729 4884.7328 28046.4543 2484.1998 2484.1998 11041.1433 4982.7442 40274.8189 4765.8062 5878.5409 2688.3328 11670.5136 5558.029 2189.3422 3503.3932 3527.7025 357428395 nirb Nitrogen Assimilatory N reduction NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 172325.8863 50855.6064 91730.0836 85992.926 28716.631 68449.2971 56416.3025 34258.4577 51090.2055 126943.917 48397.285 1078005.7506 75428.1522 117658.8583 409774.1019 62419.3866 62419.3866 34427.6757 69319.8884 138538.0544 35849.9851 74818.0541 66788.0322 37531.3645 56370.7752 136329.8432 74866.8996 105092.146 72733.4065 73961.5971 42067.0807 47270.2105 43954.6744 28870.779 40785.5488 312112806 PRK Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 5177.9115 2318.9634 4298.8661 5185.3717 29169.3788 3490.5824 73877.2651 8759.1987 3847.4244 3847.4244 2697.1244 15172.9437 6279.737 3863.3596 6159.0011 2878.5085 3616.0891 4533.2884 9291.688 8138.0407 6324.5561 2771.6109 3701.4419 7902.5553 10209.704 7139.3183 336006580 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 108759.2209 45370.7328 82171.5451 49957.0925 16421.4886 109433.4823 69405.4285 45733.3898 69132.6744 85396.7055 58006.443 1286578.1717 131861.1524 59912.3735 58226.7455 51037.1467 51037.1467 54318.2874 269358.78 70493.0818 116113.7577 99012.955 115081.7279 63251.3095 95776.1662 60268.4902 105257.8136 152389.7692 43380.0741 72059.5386 126263.5176 71505.1168 242533.446 86475.0634 99197.2715 22293726 urec Nitrogen Ammonification NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 48677.2712 36124.8343 15134.6496 34777.5177 6477.3783 14791.9275 26631.4291 17936.6407 120822.9405 26225.8765 54332.153 805518.9358 62726.2855 39660.5283 41620.0495 35279.8024 35279.8024 233983.3859 98291.88 42716.053 35025.232 34990.0932 46894.9056 21285.4628 56650.7953 49891.6517 62603.2513 175037.1876 27890.5661 67815.0628 30663.0682 39668.2749 96134.8157 55631.0036 32508.7352 422314469 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 39133.5819 9187.818 16515.7041 16752.1657 4869.2698 17008.2152 12325.6347 15889.457 16936.8849 16547.5218 20114.98 316367.0491 18019.8224 17155.0131 18987.6849 21571.0953 21571.0953 9294.7617 42489.4066 19350.9343 41835.3669 21687.6102 24156.0568 14635.6905 13865.867 20469.5613 36255.8739 60258.9572 13378.871 42919.9584 12425.1589 25789.3365 30631.2429 9470.1821 22933.6167 343968570 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Neisseria weaveri LMG 5135 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria weaveri; 20461.4428 19248.3599 12096.3969 11596.2832 13289.4871 18370.9425 60638.1381 104546.6599 17999.1733 25963.8774 23537.3938 329705.2136 35955.792 28653.168 45412.7319 19131.2313 19131.2313 27054.0355 31019.8555 17904.5461 53088.921 103871.2078 31841.9483 10893.8568 17755.5039 27230.8517 36789.8127 53268.3538 36638.9305 54378.6174 17336.2275 25677.0499 28877.2485 51393.99 20445.4492 288926061 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 16909.4503 11272.6153 22333.0291 11884.648 13080.1209 7102.6087 5778.045 10791.5095 17908.9147 7639.8958 264123.5321 12580.2537 14595.671 6826.5716 7393.6149 7393.6149 8752.9822 25864.2589 11974.3297 14001.8616 14739.2815 14094.0997 6589.8558 16960.157 18189.5181 6709.3988 28338.9233 15381.0854 19577.6607 6757.2791 9922.3736 9267.4701 7917.2376 23602.7091 32307983 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20538.8816 10827.4767 16867.3121 20753.7398 8369.8432 16800.108 6924.9741 6487.3229 12937.439 14919.2392 8991.3103 287511.3068 16353.0995 15989.2603 10442.9377 10994.9621 10994.9621 10692.0287 23254.017 15354.6832 16207.3045 15893.7807 31760.1792 9835.9062 10796.6474 23313.0966 9851.2295 39093.8062 16952.7949 35448.2566 9611.8312 11684.8145 16140.5588 8981.1319 34568.8695 326332447 amyA Carbon Cycling Carbon degradation Starch Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 18467.5117 17461.7766 9274.7411 24076.9419 8296.4313 5706.462 8385.6178 4134.7556 20380.024 9662.9927 8306.4902 132022.1007 39391.7831 12702.3609 22082.266 6403.6625 6403.6625 7427.3827 19548.4539 15736.7015 8469.0028 13150.96 10180.4122 10756.99 10281.1962 11972.5967 8336.2539 26549.4307 12937.6454 17324.8146 7854.7869 9875.9419 21790.3744 13789.4405 14205.5573 380774499 phta Organic Remediation Aromatics Aromatic carboxylic acid Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 9765.7624 6441.606 6894.5148 4375.85 2611.8712 3614.3157 7649.8869 3910.9668 362236.1183 6373.6415 5698.3945 2451.6045 2451.6045 3842.1354 11191.2973 10028.2627 9525.8618 6021.4671 466148.6523 5874.8342 5637.9285 9270.1742 5568.6772 15134.8785 19901.6436 9551.2265 5987.662 5488.1532 5674.4574 10833.443 13703.8159 142850069 nirb Nitrogen Assimilatory N reduction NA Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 98717.8538 90275.6582 8197.7484 24839.0815 8768.4219 13685.0519 34167.5601 44536.0411 31405.7807 30640.06 36925.6752 1375034.7139 211044.2718 29953.7008 30989.5421 74452.1732 74452.1732 119638.8698 76234.8948 27924.3004 13806.2465 104912.9999 28361.5758 16571.6883 32660.8776 32139.9636 16575.343 101439.131 14282.4081 30537.3758 16464.2555 34985.3165 32149.9732 23103.5415 23024.4588 70984631 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 9349.7721 8576.1021 25711.4505 6474.7692 2241.244 9411.3632 12144.7366 24357.3249 8679.2966 261461.9798 13176.4604 10366.7141 19869.5192 10863.4641 10863.4641 16807.2075 21246.7396 13683.3662 7173.4683 9675.2584 5875.0824 7176.8052 10494.6671 37128.7771 7858.8533 87090.9495 18278.7307 22393.4414 12697.4527 25761.8735 11753.6152 12791.375 5916.5655 326636631 cellobiase Carbon Cycling Carbon degradation Cellulose Actinomyces viscosus C505 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces viscosus; 6240.0069 18377.3519 4669.477 5103.3539 8257.8773 2335.1318 5532.9931 3669.4528 4295.2662 65481.4492 21659.1586 35413.4171 7926.5856 7926.5856 8768.0347 29081.8185 4002.2496 9765.1357 6902.6119 4293.0914 5853.3227 10553.3977 8944.8841 58612.0899 6548.8208 9168.5182 2421.1365 49422.643 4872.4746 2975.4402 6916.8372 320526236 alginase Carbon Cycling Carbon degradation Alginate Vibrio midae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 5017.9276 17246.1708 2583.406 2610.4011 4831.433 4259.952 3525.1757 3422.6691 7586.1611 4370.7589 5874.8789 11967.6367 16925.6859 10745.1907 5501.2261 3198.2287 3893.6776 26631.7719 296284472 phytase Phosphorus Phytic acid hydrolysis NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 6286.9962 6184.5927 24370.0778 11932.4947 2791.84 257958.9796 7875.2939 6681.5195 38975.838 95770.0833 180344.6497 12758.6999 8080.5969 13526.5535 13526.5535 12899.5223 12400.3482 6396.9734 17448.4766 9829.6908 8514.9258 5262.599 5378.8681 14980.9666 4006.3373 20610.2139 307001.2931 11525.2347 5356.4823 6469.3911 6753.7723 5880.7638 8132.289 119473825 nagg Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7283.2072 5914.437 2825.8694 3559.7087 3951.0058 86160.9524 4537.5061 6947.7428 6012.483 18144.4237 2877.1023 2988.451 13539.3265 6337.993 7530.2557 3077.1627 4243.2133 3722.6171 5534.5351 400193196 atza Organic Remediation Herbicides related compound NA Morganella morganii subsp. morganii KT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 8472.6943 11474.1149 154220.352 23025.9532 4850.1479 5787.657 21950.8626 3487.8163 4349.8595 14538.1557 5696.9095 187556.0935 7885.0537 11393.2457 10662.0095 12393.322 12393.322 3751.6966 10829.3882 12513.4418 5864.3285 11442.0984 7006.3436 5622.3278 5938.9583 15662.0211 22476.9372 17919.8921 14529.4085 12797.3235 9134.8636 8414.5654 5068.7228 5727.8789 5089.5046 348597873 amyA Carbon Cycling Carbon degradation Starch Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 44570.6985 41369.635 23613.0799 194225.8672 25141.7995 12111.2541 39010.1759 9164.5354 31221.1138 40072.8995 33941.5203 780370.4297 42295.1515 31766.9549 51218.31 37661.3606 37661.3606 21508.655 39395.4981 23797.9659 23453.4642 574855.7801 22562.6796 47234.4512 25339.3572 41252.8462 28739.5493 93882.4953 33362.1877 89333.642 16944.191 23426.767 73417.45 15077.8584 28237.1738 386397865 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11911.8607 4466.7254 6674.9841 7098.4161 6669.8673 15983.3426 7757.0208 104621.5094 5684.8466 75099.8633 31930.9608 8063.2364 8063.2364 4233.3056 29311.2841 14148.5051 27744.3228 18586.1425 4232.7274 5374.808 6731.8376 11341.3115 5401.4352 18311.8366 13338.0011 14617.3899 3225.8725 7603.3187 32681.7807 7088.1862 7682.7639 379988641 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5230.2671 49410.5887 13048.8401 5491.7829 3154.105 14843.2464 5456.0314 10313.5466 3749.4136 82408.9361 8081.555 5779.5918 10541.9179 3262.6354 3262.6354 3230.3269 17445.4198 7049.4201 13990.9039 7912.1058 8576.6446 3772.8839 8861.0026 7584.2348 17436.9122 8711.8533 10259.4338 5372.8872 6904.4967 6832.9179 3105.715 5880.4273 311033201 ppx Phosphorus Polyphosphate degradation NA Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 13984.4996 18178.1288 7779.1716 11404.393 17280.947 3788.2216 6844.2931 19061.1232 7462.4363 7255.2385 12816.6971 379977.2125 11829.1091 9962.5879 9962.5879 9674.2364 35745.7942 12360.9177 15133.4856 35170.5931 9516.2007 9616.4308 10494.0316 15849.3862 9841.2089 40150.2035 17469.0976 19169.4307 15811.7719 38728.1873 18921.6499 7926.6657 24267.2873 55231410 glucoamylase Carbon Cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 4684.8488 7026.4336 5048.0787 63313.9901 4478.4174 4015.7945 4945.0763 4945.0763 12555.8191 4127.6685 2477.219 3532.7055 6777.8117 7903.2786 8770.5833 4004.8523 3589.2647 4133.8085 254452933 TIM Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 8705.7645 5971.8824 9034.4071 10068.7487 90459.4433 4201.4743 6071.1486 6646.0293 7133.5062 3588.4077 174948.2157 8820.7244 8227.5406 3338.1683 3338.1683 6520.4178 10929.2977 11002.3228 8991.2924 8314.7659 251287.1439 4205.5791 6727.0787 13287.2789 3441.4481 16940.2161 9590.2635 10271.5638 4449.7378 8237.0709 6408.9957 5506.2989 13363.8503 400332812 msad Organic Remediation Others NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 4753.932 3053.0462 2738.6043 4573.393 7588.3396 3970.1416 31485.715 20846.8257 8234.7425 8234.7425 17158.4044 13416.577 5642.2948 13352.4181 10061.2534 10569.9722 2797.7128 63610.1972 10948.2289 8323.8494 13131.8002 53728.5797 10659.8879 3227.9395 6248.7589 7721.6515 21989.0769 134102989 endochitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 8707.5419 4906.3905 6853.4553 3671.1903 6063.4598 3572.9983 3224.5708 101708.0055 26882.7242 4513.7748 3528.2431 3528.2431 4674.2756 14787.5559 4272.3766 5039.5531 10512.9319 5940.192 15422.6701 6836.7129 3361.0337 7732.2946 7740.933 6234.7424 3863.5926 8486.3789 3290.6149 226362830 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9634.5172 5915.247 19493.898 3641.6174 6840.189 7620.2286 6016.9308 14102.5164 95291.2884 6061.0882 10577.4447 10380.0381 20617.8606 20617.8606 4996.0348 10038.1575 8335.063 7075.3998 22510.5622 24488.6943 5146.7611 8693.5556 4245.4365 13005.6433 12219.1749 9494.7459 4688.4287 11557.9278 7791.9819 3117.0584 6121.1874 4895143 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces lavendulae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4498.1749 6663.624 3165.3519 3293.1556 10689.0764 3829.3348 72587.103 3644.4653 4059.8623 14473.6877 14473.6877 5087.8781 8820.8767 5065.7697 7461.3154 4977.1561 18312.8945 2420.6457 11431.2362 5547.8613 12358.4819 2364.0079 6404.0579 5873.3922 2260.1147 74058162 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 42029.967 17922.4082 21877.6103 50451.4769 39014.5123 21447.2047 22341.0252 26029.1886 52687.06585 27717.7034 44293.3857 455906.2339 32651.32265 41841.18605 39982.17935 39982.17935 75701.82535 47434.84515 33858.28885 40538.89045 36673.48565 22524.8322 28347.49075 31464.6128 38723.8859 43367.4634 48414.67855 20379.71645 45427.00915 35208.7561 34672.35355 52425.37925 241114338 arsc Metal Homeostasis Arsenic Detoxification Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 4055.3048 13383.6431 7323.2413 5746.528 6026.1126 1917.6976 1917.6976 5074.3955 14330.4018 2279.6877 5538.8239 6136.6301 2236.369 2878.8992 3781.3242 4671.1353 257450173 Sir Sulfur sulfite reduction NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 10537.6736 120589.2703 1931.4249 3146.123 57217.9818 3694.0813 3339.2849 7974.7516 4808.4124 7450.6674 5322.5164 8929.9588 2581.1271 2019.7894 9838.251 4737.5731 2132.1107 3472.3843 4067.4106 108799771 urec Nitrogen Ammonification NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 48734.7971 27889.8173 27262.868 35209.1657 7485.2814 53948.6377 19794.3657 21965.8133 36527.9242 35759.1735 63814.6179 457827.657 31937.0953 46845.7204 68932.9392 58601.8293 58601.8293 19547.0974 79641.3478 27745.708 57052.1631 57533.3129 45185.0594 52437.2485 91745.5319 40873.2005 54335.7483 107087.7605 30080.8501 45651.4948 26170.6172 42702.7029 54385.7771 39981.5532 32042.5203 133778502 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 13467.5032 22484.2798 11495.8267 3146.433 5066.5831 6383.9491 13705.0029 22901.3338 12686.9601 169521.7713 7072.2433 16027.0417 28719.9306 10701.5405 10701.5405 5283.4568 22161.6287 9548.4322 20622.3853 10899.5757 18607.3551 3878.2041 166600.5232 15034.6634 10584.9917 41326.575 17040.9637 18401.3271 4431.9626 11822.7997 12812.2984 6753.1159 10095.1703 145320054 terc Metal Homeostasis Tellurium Detoxification Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 13093.9323 2755.4271 5338.0768 3105.1395 5765.145 13402.4667 35189.0644 136660.1498 10982.6354 6608.6788 4858.3465 4858.3465 3755.6144 9689.4273 7103.0945 7503.1654 15138.6745 5215.5666 2720.7968 4357.0448 8501.6481 3601.9795 12466.7762 17754.0444 9734.6488 2411.5885 4353.138 7543.669 7171.073 10443.9626 292677815 SoxB Sulfur Sulfur Oxidation NA Oligobrachia mashikoi endosymbiont F superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 71288.1888 12963.1232 21142.481 57459.4224 50030.6862 7469.9311 164837.7047 73230.6865 25310.0616 26045.5145 34173.5499 40017.8411 661924.9567 32003.6215 41756.3253 39488.3757 35024.5988 35024.5988 20503.0961 52323.5313 45535.0959 59258.6681 106875.0054 15242.3471 16743.2577 30442.5273 30371.126 29429.6749 40035.721 23932.2299 30351.3127 20530.1875 108798992 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 33834.2633 58024.0489 25028.1476 2511.1231 28626.221 10950.3246 8924.1696 35432.0183 11319.5677 146824.3754 6594.6492 13254.4171 12573.6509 10279.1905 10279.1905 7248.1321 24505.533 8780.2085 6884.835 11692.5338 8709.7963 10967.6834 11924.8869 14395.6315 47690.8784 10907.2382 10525.0552 7996.3707 18798.7173 12737.5183 9251.6454 221737580 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 22662.5602 6104.7176 9635.0202 6332.3693 50848.4078 2205.4991 6680.4233 58908.6489 8606.4566 5681.5311 2533.4722 2533.4722 6566.5548 10109.2857 4251.6069 4195.4859 8699.4558 6218.4712 5113.9234 4055.4859 11287.3883 5595.0824 6722.4321 2657.6962 3267.391 4571.4434 4533.7138 259413.6764 307151568 TIM Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4106.9214 224606049 rubisco Carbon Cycling Carbon fixation Calvin cycle Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 10056.9743 11350.7883 12994.3885 11446.813 14315.2686 13348.1523 8695.6074 33986.8527 13774.1177 27746.4839 219549.8332 46651.2318 19321.8936 7613.7279 11217.493 11217.493 10247.7333 20664.5876 12028.2492 13578.6426 36804.1585 11312.9296 15214.7412 11191.8533 11802.7961 17832.1184 107893.8641 11665.5858 13363.7859 6374.8442 10997.515 17868.6244 9148.2083 24875.3844 118017748 dmsa Organic Remediation Others NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 7505.8356 7271.0663 9775.5151 4525.2592 3640.2476 3990.6587 8657.5316 2306.6728 2306.6728 9143.8921 6701.9954 2534.3136 3432.0997 8401.7784 8079.5106 14149.0113 7990.8027 8099.4189 3215.4753 5144.1588 3223.1956 317032586 rgl Carbon Cycling Carbon degradation Pectin Aspergillus niger CBS 513.88 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6634.5078 5242.7614 3377.9109 59748.1804 5535.9702 6284.9454 3248.2974 3985.8371 5434.4219 2649.2949 16735.9877 2098.8277 4852.9647 2616.6709 9658.2461 3558.5848 2069.959 6037.1621 269219887 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 29455.9269 13194.0766 92486.246 8759.6389 36211.7596 9242.0776 19325.0141 24166.6853 51508.2213 469863.1797 24231.4061 19332.1549 21832.3516 78065.6177 78065.6177 15975.5075 34011.9886 54307.138 26056.7625 97828.4383 26927.862 24064.3964 25431.2836 38366.4861 22498.2567 63207.9129 34462.7116 43302.2781 16416.8439 19375.2283 26649.7224 16776.7557 71297.7276 319793665 amyA Carbon Cycling Carbon degradation Starch Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 5985.5475 5750.6851 3099.2445 3278.5827 5689.7457 3384.4339 82961.8567 5880.1362 3981.0071 5553.7315 4148.2495 4148.2495 4216.7171 13011.0325 7937.9702 4483.2689 8014.4446 6602.7058 2378.29 9265.5141 2699.7265 12270.0911 14726.8302 9934.9443 3929.985 4864.6804 5380.2269 5283.39 9785.7937 121553538 PRI Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 8572.0853 95476.7828 5924.3954 6268.5866 5040.0952 4540.5029 13905.3108 6775.8022 13836.1965 9313.443 208176.6252 19794.0773 6481.54 8051.5802 19793.4081 19793.4081 4584.0137 14942.884 13092.0021 7234.336 5255.7081 11433.7063 4352.2221 5287.7979 8464.7402 6038.7329 11448.7481 4555.7629 12755.5951 4016.7749 6463.9295 5609.2063 7637.2827 8013.7536 24418998 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 4767.0448 4971.9934 7707.5805 4716.7553 4070.6796 8822.0794 5720.5541 9088.4309 3598.9987 132922.3298 4283.381 7910.2379 5445.8403 7258.5694 7258.5694 4095.6411 11607.9449 10650.197 7041.2182 10304.3775 10788.5766 6089.0323 4661.0739 9249.8465 4070.8349 18504.3064 7473.5836 7180.9558 7190.6854 5700.7858 8026.2846 5928.1782 12144.9647 343763023 amyA Carbon Cycling Carbon degradation Starch Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 8955.5095 7452.7753 7388.7478 23974.9973 3695.1714 2726.9739 2373.8954 4277.5448 13504.8395 13539.2711 113843.0471 5478.5009 7088.1788 5179.1161 2903.8275 2903.8275 5532.6274 11338.2095 8381.6138 4566.6659 8250.8058 17321.6768 3787.1362 4163.6577 9198.9185 3038.2208 16045.7939 6554.7558 8478.8504 3197.471 5243.2403 7672.2679 9324.6282 13115.0641 34499923 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8377.2042 10254.8084 3260.1596 20446.5657 10295.9192 4287.0953 3821.0511 63232.2778 8116.3942 8961.0386 7556.9107 2150.6376 2150.6376 4147.5414 5405.3182 3546.0863 4786.3545 4824.8954 3150.7838 3477.7576 5126.2346 17074.832 238310.3461 8296.8463 7432.0282 1954.3693 11691.2252 7013.2639 23130.5951 296165056 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 13657.1649 5770.4483 8677.8664 2297835.6971 6696.9922 7702.5548 8316.6101 7003.788 7760.9885 8067.9704 5904.7878 276382.8217 10587.1396 12769.9726 12540.0357 10457.597 10457.597 6976.6177 33678.403 9647.8032 7951.152 14301.9055 36875.0146 3878.7512 42156.3778 15583.3495 5295.2685 17172.016 20760.2127 15061.3483 7712.0478 8974.9181 133885.3307 5368.3405 11443.4686 261407519 cysJ Sulfur Reduction NA Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3907.8662 5393.0394 1899.4453 8827.0331 6105.011 6356.0458 3794.7244 3794.7244 3884.7229 5601.4293 4120.2823 17128.5259 5594.0203 2195.757 5103.5328 3660.9561 2849.7992 325267989 nosz Nitrogen Denitrification NA Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 5846.3494 6206.375 9748.2624 4297.8612 3468.9471 2019.7193 4499.7531 4194.8606 2421.0806 69298.5447 4098.6694 12602.6752 4943.4254 3218.0456 3218.0456 3388.8789 7562.2737 6481.7613 4351.2297 5618.3116 7816.8512 3551.7998 4691.4687 9232.8363 4958.2813 23763.3614 3866.5624 18166.5935 4076.4721 8051.7854 4343.6684 2903.1501 5076.3442 145217785 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 101105.7974 14471.7423 8125.1093 7879.7331 7374.5636 7456.0829 7488.572 24335.4692 14801.2601 16710.9203 8828.1667 325146.5618 12043.123 27697.1136 15106.386 7952.9081 7952.9081 9521.6421 31406.4898 15307.5753 19240.795 11704.3195 15572.6335 7613.8345 7294.1872 15846.0918 22483.6131 23000.1989 11609.6707 19362.9805 7930.9062 8891.0432 9383.0203 7370.181 16113.1932 333029437 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides coprosuis DSM 18011 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprosuis; 5931.8742 6615.338 6340.2179 2284.8098 2213.8452 4236.1817 3878.3109 3629.7566 160645.7672 6491.2833 4495.0541 4745.6589 2441.0522 2441.0522 4616.7165 8579.0794 5524.5752 5836.5267 8878.7586 5689.2717 2669.5527 3907.2687 8215.8282 5691.9404 13595.0625 4931.7857 8799.8751 2321.3491 5841.3621 4205.6135 3075.0681 8811.3629 308753084 cmci Organic Remediation Aromatics Other aromatics Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 691399.0819 86591.2554 466677.9806 992958.6883 593873.6891 457711.2426 452401.1684 747818.372 801002.6547 608864.4106 687412.622 412949.5656 15435182.5915 789531.1145 952331.2255 1626707.8207 739929.3652 739929.3652 438106.014 667564.5887 497436.3487 1421853.332 615792.0621 1179020.9581 442039.1823 385422.7165 499807.0696 310337.9359 1093100.4704 750547.9251 611989.571 372164.7896 367671.1714 392265.5403 288322.0803 1070545.6355 99080396 cmci Organic Remediation Aromatics Other aromatics Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 3939.216 8975.628 3194.6193 3785.077 148518037 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 462192.7252 20644.6061 157525.0589 22531.2044 16365.6873 1917966.5926 198342.9845 316835.3695 76909.5878 77211.486 67750.2458 247121.7495 11534059.9735 52988.5286 65847.258 108940.4887 152774.0116 152774.0116 119505.0605 118762.9074 52373.9873 196076.1139 300305.5894 136066.1628 71219.6843 53512.719 285619.2226 94563.0091 149517.8531 131458.3976 795728.51 107463.6794 106080.3886 124959.2605 102507.8313 85359.452 114799243 ppk Phosphorus Polyphosphate synthesis NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 15744.2605 44887.3321 9228.0459 18046.0404 15310.1427 5503.1908 15530.425 11677.6355 15648.326 11913.9758 30255.0072 18508.8355 300727.3329 31366.5074 67143.1977 31647.2816 18597.996 18597.996 13501.0014 28983.6506 18393.6455 33175.17 13603.6777 39011.2477 14056.4562 24977.1296 22794.4606 13433.539 13390.6989 15563.2863 27902.5752 10536.1113 15924.6883 24555.1933 9071.0439 26019.9564 383641488 xylc Organic Remediation Aromatics BTEX and related aromatics Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 7165.8694 7130.9658 22701.2055 14458.6336 3521.6691 3569.0038 3011.6623 6106.8309 16586.7006 9006.9516 1657992.7774 9827.6802 9529.6974 13078.8306 5171.8704 5171.8704 5517.3764 10700.7255 6636.7248 54298.3329 6679.0528 9101.9348 4192.438 10525.5441 12387.9627 4443.7667 19035.3118 11241.0213 14364.719 5168.3438 8434.0715 68239.3289 3026.3779 10484.2073 358370983 badh Organic Remediation Aromatics Other aromatics Aspergillus kawachii IFO 4308 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 7553.3219 20631.7066 99079.3822 6785.7413 4293.024 6438.7475 3444.0198 5879.2291 4811.7028 3419.8453 124489.6512 7014.7664 6444.0157 4508.905 2967.8415 2967.8415 6876.5597 12084.8785 7168.8262 8082.3483 31157.8516 9851.1819 3201.2028 4648.6378 10124.8046 3604.6951 22505.6554 61294.9543 3628.0443 5555.9212 49637.8635 6052.092 16595.4978 34604742 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5575.0024 10886.495 30075.6517 11563.9979 4108.4645 8399.5135 5361.0635 4180.8345 9261.2555 7541.2108 341837.4789 7880.1102 10909.8716 18278.0887 9950.4142 9950.4142 4355.0162 10616.8848 7548.1823 5058.7805 50402.6843 3096.3253 5355.9077 15378.1513 2852.593 14139.5112 9170.7888 28629.2257 3237.6359 7390.7557 6321.4235 3802.3867 5775.9817 118434453 pcag Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 4089.5962 3077.5896 3933.3459 5660.1099 2651.8347 8470.8558 7655.1192 4078.3915 6148.483 5168.2046 2683.7315 2916.9696 11386.3092 5625.8318 7631.6112 1796.3372 3730.4911 3768.319 2844.8735 6804.0514 329956854 pula Carbon Cycling Carbon degradation Starch Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 14819.5011 14780.1623 6234.8104 30064.3725 4179.8489 10618.8429 15587.2316 11576.5301 17880.2363 44058.7524 261051.626 26884.2758 47967.4099 16448.0526 16584.0656 16584.0656 13106.2241 31400.7362 23621.5367 17159.0788 97617.424 55460.2526 13087.4056 33523.1579 23192.7797 11408.2806 74337.7921 33988.4137 32529.2829 11845.9752 14715.3688 18324.4777 18522.3249 18445.4004 316922313 b_lactamase Virulence Antibiotic resistance Degradation Bilophila wadsworthia 3_1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila;species:Bilophila wadsworthia; 9176.6839 7898.1182 15203.931 13618.6244 5053.5754 7915.0167 8490.2639 3719.0891 10360.8763 73272.7856 6737.1104 211950.5371 13796.8755 17282.5972 14942.0051 4886.3941 4886.3941 6865.1575 17512.8539 26930.8756 7271.355 12164.6562 13282.0059 4736.0473 4106.1018 14534.0509 5366.3386 20799.9421 14580.8291 21296.2689 5677.8802 11190.4555 8425.001 6498.7088 13655.4315 344260873 soxY Sulfur Sulfur Oxidation NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 64189.7874 11071.3407 45379.0608 12845.4821 18351.354 12519.4849 11792.3591 21535.0114 27644.8189 28159.8177 348759.5184 80734.2744 33571.5258 52593.1493 105817.4267 105817.4267 18657.729 35985.5028 20097.193 44240.7159 38091.376 69732.7117 16062.0361 81563.4734 22431.1041 26364.5894 65062.9597 32107.9668 41537.5171 12741.2633 31689.6165 70101.943 30201.3997 76018.7476 260427193 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 66529.4733 18695.7139 20587.7158 19385.3274 28152.5036 18755.4776 24458.5747 31771.1263 70916.2186 348875.7914 52054.555 63204.2651 55984.2575 124650.7288 124650.7288 16664.8176 36273.2793 15817.8502 16756.6416 25853.8143 13629.5626 24941.7032 37237.7819 39101.8215 33913.1553 100913.3337 38983.9664 55213.9072 8753.4866 22573.4432 76060.968 27009.1286 103638.5905 254475645 xyla Carbon Cycling Carbon degradation Hemicellulose Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8850.8627 6058.9467 3610.3739 7361.1142 9439.7736 4458.2194 3106.4203 68184.8628 7223.9379 4255.0014 2005.171 2005.171 12128.2741 9191.5246 4752.7922 11727.0584 6112.6361 3417.3822 6505.1743 8749.7448 12741.3846 11520.093 7041.567 2923.4805 3956.5599 65873.4525 6816.8208 6329.1568 262401688 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4753.7415 3200.7812 1611.6387 2869.4404 353685497 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6051.4387 14442.548 5447.8202 31492.6577 2654.3344 5320.7182 6911.8129 18477.3788 73030.9731 10622.4256 16738.1587 7382.3297 4145.645 4145.645 4415.2785 16316.6852 8554.2692 6403.7352 6319.8846 3129.0878 5498.9693 13355.5754 44375.0718 81540.3197 12291.1293 14282.5438 7220.4547 14393.6659 28576.3657 4445.6555 11502.6087 34104878 cysI Sulfur Other NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 42613.2409 6272.0544 22492.54 4891.2368 11708.352 14032.7903 4258.8023 16269.0017 19951.4162 79696.1434 11746.7048 8946.9829 7569.0671 7569.0671 3278.5366 21887.1458 8738.6625 23689.6757 14121.8552 7471.1617 20622.9519 6159.7314 11917.6848 5922.9465 32487.9253 11337.5093 10592.0981 4802.5859 13238.5109 9266.1545 7882.7828 91860.2097 330828426 nitro Organic Remediation Others NA Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 5868.0888 6478.915 11877.1072 22450.699 2732.4716 3819.2187 3328.7685 72219.883 39870.9032 8202.9616 136590.0717 32166.8739 9049.2234 5711.9168 14235.8865 14235.8865 4709.539 11762.3934 9247.0807 5351.6755 17537.1531 7138.7636 3872.2561 6086.6572 15953.2985 6506.0317 19717.2 18959.257 10870.7649 3858.7596 8477.881 8746.7215 7726.1981 386856890 amyA Carbon Cycling Carbon degradation Starch Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 47526.6826 799919.7586 53357.2537 25496.3632 9688.4705 33146.8861 22581.1479 168315.8368 78927.7637 158556.2449 40842.6379 1362445.763 22017.4082 46250.4515 31656.29 29458.1896 29458.1896 315323.2609 36129.0388 18484.8642 34399.4338 92955.0328 231058.2062 34740.0653 25984.2902 59204.2721 61689.4807 64194.4441 12347.7625 26122.6011 10731.1116 34343.8848 35843.3605 66797.4621 38579.0735 334261848 narg Nitrogen Denitrification NA uncultured organism 16352.3669 14108.3355 367975.4148 12834.7494 32913.7608 13596.7522 36067.1876 16993.5868 44077.1525 20196.0994 321234.8424 34952.7232 84796.3285 9592.2567 18679.643 18679.643 19572.5994 67500.3275 16885.7223 28085.9726 17214.6455 11172.7352 14922.1433 13729.4079 20144.0922 23702.1905 40593.1296 22740.5815 21136.1136 19065.6514 16494.9659 26686.9738 50156.3355 22492.3446 50284400 phytase Phosphorus Phytic acid hydrolysis NA Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7479.7978 20651.1879 2350.6175 5573.7562 2013.2798 4434.8904 5941.0907 4914.0569 66189.8461 12635.9953 6109.483 2336.5911 2336.5911 4918.1956 8136.8473 5803.8357 6154.6664 4893.2505 6734.2811 5260.6688 21261.0241 5249.3563 13293.5521 4348.2587 9852.1708 2924.5059 4811.6993 6383.8743 6024.5701 6920.883 334116811 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 6989.5926 4341.426 3334.879 3334.879 2127.4276 7897.4133 1715.9997 7132.1425 334859460 amyA Carbon Cycling Carbon degradation Starch Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 28303.256 24702.3363 235518.426 50349.5674 12485.326 19025.6767 34868.9962 38266.6852 17522.4828 15539.2375 23635.247 381547.85 32294.4055 16919.0079 53944.0895 28804.7533 28804.7533 9096.501 51242.5143 25414.1723 24386.8447 30274.7981 32117.6828 11187.1739 27784.4465 46942.6412 32079.7608 58801.643 20809.1916 24216.8784 16497.9095 38848.9528 21868.1191 29351.7212 15353.7194 325914822 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 6219.1415 8873.4756 62642.4529 9705.2586 7721.7475 3460.8348 6661.8474 13473.399 9307.7738 146681.969 7778.8534 7962.3437 17232.1331 19203.8375 19203.8375 5807.0772 11657.3529 9804.8355 7144.8262 13467.6697 10785.4792 2998.5824 5723.5899 12222.6439 6645.5808 19877.187 8070.8112 10419.2849 5809.9379 6753.4839 52796.4361 4836.6429 8362.1071 54027836 arsc Metal Homeostasis Arsenic Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 28037.5329 8726.2834 196632.0979 7478.0829 5059.6292 13351.4337 5292.0504 9378.5098 7101.3897 38035.7833 270377.2668 59854.0391 15753.6519 30057.1683 23297.5901 23297.5901 11851.1645 36400.5183 21436.3554 67716.7324 20858.0561 6324.6588 5203.7522 18929.901 13281.7722 38339.1187 32557.008 14347.4133 26010.6247 4901.4676 29103.7284 23886.7002 119447.6218 16424.6237 260935581 chitinase Carbon Cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 88690.4432 6575.0926 10913.1015 12137.0346 3543.3795 2729.3656 6114.4009 5988.4941 210843.1851 13557.284 8097.5842 6675.0477 4010.9232 4010.9232 4602.2467 11858.8328 9555.0445 10681.1647 7604.4723 5825.4669 5201.1528 3709.6418 9277.1627 4629.4529 16479.6161 8557.6522 13520.366 3191.1163 5408.5694 7088.9545 3466.2361 11363.3834 126105499 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8006.7312 5045.4352 20100.6542 11057.6896 3287.1728 11155.8996 6275.0168 2574.9042 52786999 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 4767.3918 4213.165 3070.8585 4074.7295 3798.9429 7264.9215 3242.4375 5113.7812 7836.0872 6362.0922 2270.0962 2371.0566 5970.5399 8465.0052 6952.3121 5957.469 2575.4506 5062.3558 4726.3655 149143139 phn Organic Remediation Herbicides related compound NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 23144.4717 8053.6021 32727.243 167382.9818 9350.4057 35030.2192 60507.8256 16011.2356 15898.67 24290.6728 16478.568 210434.8576 13804.9319 14306.7046 26102.0288 34284.8077 34284.8077 8611.933 55835.3578 13491.8789 32906.2259 24133.2678 24128.1383 31158.1997 26742.6196 39582.6562 83178.7518 84773.9355 63175.0181 35087.2292 11519.0736 19345.0925 14793.531 30185.2541 20186.5485 40253092 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10780.4889 4936.1786 4325.1646 10014.0178 10202.4973 6518.1624 5271.7155 9975.826 10844.754 5457.4618 157490.1476 12206.5619 11295.7683 6704.0672 94962.3637 94962.3637 6784.6557 13855.2926 12865.5605 9152.319 20895.3978 10776.9972 13785.7968 6854.8159 11174.4883 5227.6603 25030.3592 13766.5525 15741.6662 4702.8291 10474.8201 9153.8971 5666.413 14474.2959 163663265 cysI Sulfur Other NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 42345.3063 28609.748 19683.6164 93850.572 18491.9091 40672.5272 23521.2046 38420.1485 59559.0729 20511.5318 28105.2865 118122608 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6096.6427 5304.5386 5780.2552 2797.8311 4282.0506 2358.0518 11180.8511 5764.267 6649.8733 130374.6378 13374.1477 14013.988 16108.2579 8574.5067 8574.5067 5238.5077 4974.881 3969.9006 4585.9802 6500.6187 2760.2622 10634.6606 3845.7853 115620.318 8495.5298 10546.2253 3780.412 3119.4114 4679.7893 4141.0946 189347907 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 118401.3583 186291.1204 180527.9269 41627.9845 62477.8359 95108.3392 90897.9441 100379.0917 121251.3492 162712.9086 296199.8261 254192.0336 2983591.4077 85937.8306 101722.4776 154542.1312 109695.383 109695.383 50132.3619 238430.8571 59292.5508 59697.0497 138200.0672 206989.3889 91828.1536 65181.1379 128232.8519 155467.6175 222356.8781 140917.6852 129202.4001 62267.4626 83744.8237 113240.1903 80792.6845 113048.7752 392415463 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 132948.1342 11539.0312 31292.6589 42532.8733 115050.6963 29585.4394 93691.5127 18895.2768 5174.1285 30856.7055 35113.92 24382.8116 1751575.7782 38430.6877 36434.3623 97761.0053 51381.6798 51381.6798 22416.6064 28552.3564 24308.7989 38666.4387 40201.828 19437.1878 12287.325 17851.3087 85496.3179 14041.4246 100704.7839 61508.7759 48011.9747 16428.5377 32242.4993 21104.3477 32211.6011 23033.9105 56475804 ben_bcla virulence NA NA Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 205549.7801 104445.8865 78251.1898 212398.4448 1579246.8904 34845.8679 161108.9113 119662.3684 94981.5614 134367.811 135643.8379 80719.2946 4313377.7637 200445.7994 162018.0693 156394.8117 99053.2016 99053.2016 81709.3622 155728.7844 132892.5231 120686.0335 143588.3692 236135.9113 79551.1022 53084.2976 132086.8232 54262.8117 186795.0669 123309.3608 134697.892 55750.5932 91170.2265 70283.2942 65246.7405 153045.6857 254786902 nirb Nitrogen Assimilatory N reduction NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 4391.0851 2712.4962 8623.1357 3503.0673 3503.0673 8503.7751 37277.4529 6713.5953 332591851 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 97823.9761 20634.1574 494083.9246 44132.999 24920.9766 10066.5804 34432.7559 36037.581 14666.4759 46536.439 42842.6189 24344.906 963712.531 41280.6895 34666.0029 40921.1998 23276.2855 23276.2855 31385.9389 53985.6947 32186.0417 28272.2114 71935.4979 54090.806 21308.0037 28781.7873 84063.717 39162.1749 127349.0608 39977.4638 52334.6775 22712.9806 29446.165 27977.7579 28848.2799 57928.9389 399908851 b_lactamase Virulence Antibiotic resistance Degradation Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 74743.4207 104313.8941 25675.2131 27322.0666 13169.7936 21758.5554 26580.735 13559.5635 42462.339 36198.8303 48931.9228 2096421.2142 54169.6976 40430.0918 33573.7618 34886.8617 34886.8617 21414.9686 55788.7566 36565.9835 39880.3508 114596.9962 69863.9519 28328.4751 23414.1466 45990.4803 34446.5721 80220.2462 50957.297 60177.323 16350.443 85390.2206 38677.6896 38412.0861 96213.1097 114543921 pgk Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 4892.817 27482.0367 7473.2763 2158.2385 4193.214 3608.7462 2872.6256 9824.3572 6603.3565 4961.6221 4961.6221 4080.6947 4708.234 8730.4135 9885.2661 7053.964 4161.9011 10635.5576 19157.9612 10081.9855 2397.3838 6973.6489 7227.5065 293613423 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 4357.9217 2539.9799 2539.9799 13041.4468 31892.4277 3221.2892 94554960 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 10588.5374 7319.1246 4487.5604 7494.76 14685.496 3493.7542 2745.7308 11782.7704 24775.1864 4764.3404 336906.402 15477.6657 5761.4938 6220.3428 19226.1324 19226.1324 7808.9549 15054.0858 10049.6187 9746.3821 16127.2276 13019.881 4530.5516 5150.0827 12807.6976 6503.7681 17351.2535 11612.6807 10361.881 3328.0815 5415.3477 9549.6659 33466.4756 14126.9474 45444767 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured soil bacterium superkingdom:Bacteria; 6492.4964 19691.2754 2492.5759 3413.0014 3658.7544 2173.5675 2173.5675 6982.2727 21677.2687 8153.0382 3074.2711 17273.9089 3546.3142 2532.6913 64492.7339 344036340 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 18712.1304 90310.7181 34406.163 74459.7862 23307.2721 4366.9351 26978.9197 14759.9542 18298.8499 30594.7834 260945.9443 523491.8634 44785.6461 45880.4773 60420.1529 50955.7684 50955.7684 14221.7206 34402.026 37086.0802 8352.9429 25503.335 11670.9623 32286.2421 29019.4815 120995.7082 17484.1014 397987.4512 47413.5119 60011.396 23629.0862 63339.5598 34149.5068 12066.1702 11302.3577 383339500 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 9133.4311 11615.3627 1856.8146 6842.5775 30709.05 3642.3051 23694.0385 5690.1878 5810.9858 2506.2438 2506.2438 91489.526 5663.0294 5550.4785 2814.8107 14357.3233 13241.4176 9447.846 2985.5202 11201.3842 7831.0355 310824867 alginase Carbon Cycling Carbon degradation Alginate Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 8494.6569 10191.6738 8162.4416 9786.8527 19057.6738 5814.021 27851.2483 5721.1185 13614.0626 10816.7733 6576.9319 6417.64 109935.5492 7793.9569 7057.3859 7057.3859 6936.4107 22612.132 10337.9823 9512.508 19798.4556 7262.0467 8635.4507 9235.6611 16597.4476 12071.4894 30587.25 16195.0737 12948.8749 11012.367 9002.2991 29764.2099 9444.6824 40879.2331 312878772 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 147791.267 58346.0383 96430.6124 117433.8034 75181.0782 115050.0679 100731.5278 356921.1269 146668.0501 91199.9413 136994.2637 60723.8278 2277443.9637 141940.7857 143463.5025 112078.4881 93536.6522 93536.6522 77733.1586 203512.3579 87965.8624 141750.6437 158493.6707 184375.7819 166602.2927 52841.6007 91727.1274 46935.092 207985.1363 434198.435 131399.534 49793.2674 83306.7368 84759.4124 63551.0218 150859.6791 1255446 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8299.8647 11879.6448 36591.1662 7433.8463 9680.7522 5147.789 4291.5271 6561.0378 4485.8947 3909.2445 111814.8947 5272.3182 6511.8945 7555.0131 5050.1243 5050.1243 2590.3561 17694.51 8790.4126 5408.1522 5098.0339 13429.0921 4822.4451 32805.6705 11005.542 11325.3609 7364.1738 4060.6416 5575.3092 18826.043 74055674 pgk Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 6226.6031 8457.4279 39194.6971 3735.3298 2004.9045 7647.4438 52126.1425 3887.6219 130280.0476 7459.0574 6124.3787 1884.4336 1884.4336 3594.1502 16586.827 7731.6481 6045.6904 6175.7134 12029.036 4960.1662 3740.9816 8071.9096 6478.9133 20750.3344 4741.5289 11513.6212 4982.3214 4459.5106 5443.7562 4740.1458 283809389 terc Metal Homeostasis Tellurium Detoxification Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 10253.2571 9163.7693 8052.1588 6904.4969 4530.8983 5117.4289 3817.996 4506.1311 7978.5134 2721.3145 73606.3538 6829.6309 4344.0848 7223.2096 6647.1598 9038.1988 5794.7588 15934.0307 7318.5626 8815.2622 4249.8643 2976.2394 8099.5568 5013.909 14792.1591 7603.406 8425.1696 2977.7661 4510.6382 5155.9975 4930.2757 10388.8351 46392598 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 53266.9139 4960.5684 8903.6448 4470.8431 9416.3744 4055.8444 13709.8378 6581.8229 5955.5188 96692.7096 8638.0963 5649.12 13708.9032 5787.2161 5787.2161 17320.399 6541.1155 7974.5761 9025.6522 8255.2402 3253.673 7499.378 13433.9512 3238.1742 12919.3916 7841.0925 6316.6279 35326.3815 8073.5138 9692.3237 18017.8326 91700878 dehh109 Organic Remediation Chlorinated solvents NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 28179.4318 12558.2162 430322.6893 6125.8619 117484.8188 16442.6761 9136.1399 15070.0314 19584.5292 17733.2503 14257.5123 22367.1173 41589.6439 33570.0971 10305.1139 10305.1139 27206.4732 29350.4185 27125.2252 28317.5729 22788.7029 33965.9929 15340.5726 56184.4094 23216.5206 14836.5577 98417.6114 42252.7054 55077.7965 16628.0312 21092.329 15619.2512 14019.6741 62852.7321 262372525 PRI Carbon Cycling Carbon fixation Calvin cycle Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 14212.5939 20792.3772 28530.7282 5095.6112 6303.8401 5386.4477 6747.0535 10615.9231 5943.7149 167902.0373 25680.8359 14923.517 6590.7021 4657.7402 4657.7402 5565.0055 18872.9453 9488.3269 8076.8434 8727.2458 16166.8401 5340.925 6021.4957 8462.5463 6214.1877 35718.4951 3892.054 12206.4736 6101.0686 24512.3241 7353.0143 5272.0481 9810.0986 281198727 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 3951.3125 5344.1985 6379.8751 5019.4887 3132.085 192764484 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22584.5472 10393.0857 15242.1945 17591.6761 3803.5906 51778.8422 7866.804 11427.2361 14502.0389 9312.7619 234093.3504 11777.0438 18406.6937 18636.5488 18073.8736 18073.8736 10064.6408 29191.0036 14362.1124 31081.5229 21738.5739 9527.2115 6354.3748 13641.9289 10893.767 6310.9535 40784.3882 55350.5939 17836.4197 13389.5786 12281.8099 12046.3508 5135.911 13762.8202 345135785 amyA Carbon Cycling Carbon degradation Starch Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 64358.5632 50140.4902 30669.3862 18019.8157 78518.3884 31753.0913 24054.8693 134592.0738 28849.4287 57417.6347 38066.4957 43712.773 930735.4188 39184.6037 69347.942 180531.5484 88445.9048 88445.9048 39782.3893 50521.1097 31422.4016 42916.0466 97089.3545 20542.435 24474.3168 49736.2511 53768.2844 133478.479 85969.8173 78466.4663 49394.7628 43992.8509 26943.4642 58558.5265 26367.0498 72043.0858 298387607 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7772.7646 11660.5544 7798.4225 3067.8001 6432.9946 22755.78 5885.358 10959.9935 4367.4141 105276.2809 4619.8861 4093.5389 8742.7509 4653.4303 4653.4303 4204.7473 6651.8981 5033.5675 3804.6536 17873.9451 7822.3972 7458.071 8936.6987 2881.8811 9196.7735 5525.2956 3403.3626 5403.3615 7464.1398 2899.2106 1764155 tfdb Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 124371.4334 701950.3892 71298.7608 39095.3569 42879.9072 17229.5818 55709.9636 121622.8735 202782.9122 79336.9784 70998.1231 95054.8509 3783229.4765 237607.0567 58071.5995 106393.3378 67376.3325 67376.3325 52819.1446 119854.7394 87556.6666 57816.0871 107777.5095 49908.8709 53807.9525 47797.0084 92662.3455 72580.7205 325740.8183 84761.1827 78817.5884 42768.9416 51056.7252 71207.3557 73816.8142 131357.6096 69151647 alkb Organic Remediation Other Hydrocarbons NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 6128.8948 10060.3421 16199.6213 20834.3452 4642.3976 5775.464 2243.1626 7796.6921 7149.8969 5168.6109 135422.2705 9124.5697 10104.2544 53804.5998 6295.3441 6295.3441 5779.3454 62811.9939 12617.4161 7648.231 23623.0978 19949.4348 6470.8173 7473.7083 12488.6234 15461.7653 20682.0835 11807.3492 19257.5612 9268.9085 10409.7096 11609.6187 45440.5822 14886.6687 365855718 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 7643.5699 5254.1946 19139.6766 7950.8367 5287.7997 5672.837 11173.4243 7195.2983 4096.4275 9955.0573 167118.9577 3944.4734 6680.5715 32527.2556 12424.4361 12424.4361 3477.1516 10572.3329 9855.7384 4790.7213 20633.1699 10538.7577 4014.6609 7026.4289 8706.5132 5591.9133 37175.0001 6780.9643 8981.4829 3141.1202 13117.2445 7221.4842 10950.9424 344039014 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 938706.7956 61292.0509 413890.8775 665983.0196 764957.5825 157390.264 342875.2422 575444.9273 190857.3816 396949.898 354608.4907 267558.9132 9051364.9031 385938.2058 544209.7035 467170.4881 496145.0101 496145.0101 394552.1181 431572.7307 227607.4081 362343.3416 714176.8379 319117.8351 432953.9393 360068.0494 591655.6839 309004.9064 1087374.5717 438367.3626 440496.1703 287882.1326 328503.2664 377140.2676 375508.0894 450151.7018 27350938 pcpe Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 23764.019 20741.2306 35965.0185 45039.2714 35903.7607 12016.1316 10231.0478 11716.2122 26459.5486 25064.863 36043.6022 288625.6512 14133.1236 31297.4782 86353.8082 39529.9993 39529.9993 16083.7008 38490.7354 21779.496 335851.4094 33144.4076 7492.7421 8746.64 16657.7024 39557.0159 21280.8145 54242.581 21962.7291 26295.8101 10954.6451 29964.9507 41830.6452 22933.4723 12188.2548 116225255 alginase Carbon Cycling Carbon degradation Alginate Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 21073.0495 8819.3534 89277.4024 9021.3889 99273.9671 43495.763 13466.8415 10952.2715 126624.8732 22885.2946 400767.4268 16178.2007 15372.5728 59118.1032 23269.96 23269.96 10966.9351 38840.2279 22302.3584 10632.6337 16778.4269 34821.9241 10662.2585 25576.1228 20538.2636 16416.8161 90638.2726 35827.3415 62362.8566 7998.1512 11737.6744 22144.5113 11075.0813 53035.56 330957141 ppx Phosphorus Polyphosphate degradation NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 136961.4456 11697.7251 7086.1107 15126.159 19799.5288 11340.6887 2202.2467 3709.201 7050.1721 7412.4822 226788.9404 10279.8992 40510.2029 19615.9253 5680.3917 5680.3917 9201.6132 17571.2835 9356.8408 4451.9301 11174.2521 5335.1585 3584.4006 5165.6568 9099.5181 5611.6971 23550.6552 17022.4544 9788.0459 4897.9519 13981.7886 51207.6236 9361.3665 7217.7199 291620460 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 244291.4893 16627.2673 112894.4791 67964.5547 45861.6554 34798.7678 95521.3676 111407.5374 38366.7958 67993.9736 53101.8286 49253.9307 1775802.6833 67080.155 129489.1393 99754.2718 120979.8469 120979.8469 46389.3475 446789.5296 55581.8103 787575.0209 205716.2105 228806.7356 419098.6158 226587.2406 86292.9211 50931.984 380567.2509 95679.1163 124335.6119 133478.5899 85907.0039 103327.7484 39615.5132 329586.8397 177840407 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 11872.0252 46403.8852 8220.2624 27368.8687 25129.4263 59550.3795 27640.2584 13786.2747 12790.007 217133.664 10747.0305 162685.92 25549.0589 18967.8985 16978.172 15536.99 15536.99 9155.7604 214540.7642 125448.8875 7123.4916 30948.4332 10313.5761 4223.703 13689.0927 48448.8065 16898.3192 50114.7852 24662.5509 53783.9767 17055.7274 27589.7326 18644.1041 10279.4754 25894.7287 92912811 pcpb Organic Remediation Herbicides related compound NA Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 35346.7504 25659.1259 4197.7013 291048.7772 7320.0385 14751.8237 11105.0574 12618.28 12196.1773 365838.9355 10565.7054 54938.2527 5672.0577 4907.9315 4907.9315 25859.1434 25374.036 14501.2369 46717.3171 89744.1925 75108.5357 16166.1311 12942.7919 8660.6548 158863.3145 33448.9319 17130.302 14824.9205 6488.5406 55843.9146 41414.8747 11775.9336 24550.8029 114335934 mer Metal Homeostasis Mercury Detoxification Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 31426.1473 124348.7348 31499.7006 17923.5025 8785.5731 56284.7754 21292.5963 17601.4054 51139.4932 36894.2976 26375.3435 657671.6836 28401.6528 34298.6567 32911.3713 33953.8883 33953.8883 28240.4429 62711.5481 36844.654 49246.516 52054.9971 50102.7132 26203.4104 24009.7944 34741.329 29336.5515 178565.353 44662.5542 54012.4322 35560.1514 36100.6105 30529.5386 15528.7993 54881.1149 118194172 urec Nitrogen Ammonification NA Cenarchaeum symbiosum A superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 4260.904 24065.0205 2483.6839 4382.0204 6842.4417 7343.2614 4357.3421 4357.3421 8489.0299 6612.7543 3649.7776 2400.6596 2884.9832 3606.4905 13600.2197 2319.9753 7190.4513 1955.4922 333926065 chitinase Carbon Cycling Carbon degradation Chitin Serratia sp. AS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 9535.0427 8833.01 10548.9819 10565.88 9385.0284 7152.4066 13011.7448 28938.8719 5317.443 228002.5132 13556.2916 10020.7804 5156.9142 3308.9279 3308.9279 5362.8377 14300.5139 14805.0512 10819.7156 16826.5708 10727.6855 3539.7598 4940.6478 10438.7996 5129.4434 22159.8716 9155.1024 12201.4456 6123.9337 6241.7267 6888.2953 6338.544 16272.5244 329311300 mer Metal Homeostasis Mercury Detoxification Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 23874.2347 21593.2989 10491.8708 12534.0233 21978.5051 17444.9419 108122.3818 29431.9953 21041.6547 18269.8398 23809.1637 240632.1468 15210.8267 19197.2658 26036.8423 15954.3734 15954.3734 22943.682 35684.171 23284.3352 13555.8446 21764.2019 12845.2465 10561.3739 23103.4047 29614.6502 32540.1406 75978.3472 24744.8184 20241.695 16602.7367 20302.017 28624.7591 9377.257 14988.2766 85696725 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 5554.7221 18828.262 7638.0076 8682.6997 7279.627 3714.709 5470.0898 12413.4421 12413.4421 7532.2021 4155.0993 6795.2882 4915.6046 10541.3388 9268.2345 9507.4522 2924.8736 3652.6551 3399.6073 2543.0225 290470336 terc Metal Homeostasis Tellurium Detoxification Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 4504.0826 5851.9622 3124.5435 2768.5691 4326.4289 2720.8759 79554.9043 3747.7583 3946.9691 7992.1549 5209.8148 6609.7189 4126.6652 5341.0322 3005.2858 8588.4668 8896.3935 5380.7307 8701.8592 5249.256 3471.4023 2999.4065 5999.8868 381166838 FBPase Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 7650.275 14241.3698 10341.9648 9315.4208 4801.7865 5077.7899 2918.1809 9830.8894 13118.2383 6322.5198 198572.3063 13223.899 10030.4724 23529.7583 11344.2414 11344.2414 5969.6361 14423.5757 11110.1009 9618.4247 17844.442 6862.1915 16984.9949 7029.0134 14833.8568 5734.1887 33577.689 10033.1399 26508.1118 5094.6311 7921.0077 5890.1362 6805.9639 8846.9516 320095053 xyla Carbon Cycling Carbon degradation Hemicellulose Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 138621.2838 99165.5823 106642.6013 142291.7878 111217.7902 82599.1574 167609.8971 188867.1825 447951.3204 114947.4796 125302.7008 94346.2998 2420778.989 188709.5377 396931.8935 268547.1038 151500.804 151500.804 99515.6651 190123.8363 107075.7451 288241.8682 301664.4084 294987.1329 140705.1825 114152.662 134554.0515 99027.2398 286893.1748 215343.9527 207015.9222 113278.1754 109534.1043 106081.9852 79081.5979 618160.1617 388059266 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 1500E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 26540.4184 10099.4405 36123.0824 17148.6294 12209.8002 12344.4471 11429.5738 9198.0492 11563.7866 8239.0602 191005.4453 9247.1205 12347.6657 11647.5293 6670.0937 6670.0937 11389.0441 27541.485 18116.0133 33624.4651 17092.7746 11076.9517 8908.8748 14222.1152 18520.391 7911.4192 24250.697 21822.0159 16556.233 11229.3974 7447.7541 14996.5054 6321.6166 12311.6376 13182951 amyA Carbon Cycling Carbon degradation Starch Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7872.2651 6245.2686 2853.0115 2724.0821 3698.7662 6438.823 2765.5962 69116.5794 6367.1132 4951.4 4295.6114 8921.3899 3692.6288 5452.5314 5333.2832 5487.1899 9216.9901 73650.4883 7799.0711 5249.8026 15361.421 4425.6874 5983.6786 3311.5002 26469.4927 6934.5563 3246.7881 119493471 amyA Carbon Cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 15610.8115 9799.1652 24985.509 8509.4202 8494.399 16686.7981 34672.5482 8737.3103 11974.3826 16640.6429 6841.0004 237009.3067 14757.6753 15974.3608 9849.0919 8178.696 8178.696 8823.8754 19933.3203 12911.4124 14440.6882 15951.4769 16740.9988 6240.4674 9113.0782 20997.4991 8377.5972 33151.0046 14081.5488 15400.5013 6915.0848 10602.3073 20101.5206 6913.9327 20270.0949 75676336 ppx Phosphorus Polyphosphate degradation NA Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 6607.4173 57148.9619 14382.6739 4976.1182 11968.3531 4427.0469 11477.0678 5856.2579 5677.0601 113495.3003 9653.3743 8081.7428 3761.7578 7264.4564 7264.4564 4220.9625 10904.0477 7007.7603 145422.9994 27931.5753 12816.6232 6898.8902 5761.7939 10496.0886 17245.1704 13388.2731 8674.3348 19011.3959 5962.1706 5665.8944 7283.4139 5742.7735 54901.3597 325920130 catb Organic Remediation Aromatics BTEX and related aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 4298.4415 10370.7617 16950.946 6885.1221 5305.5125 5305.5125 3061.6839 18252.3176 4947.6124 4982.092 9006.7605 8000.0151 2456.0486 2723.2181 3527.6842 10815.9372 4176.8984 16494.6366 5025.4645 3859.513 345870731 aps_apra Sulfur adenylylsulfate reductase NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 8759.3891 9268.9683 3475.3368 8067.9971 2569.7791 8464.1522 7709.517 7630.8426 91693.3614 8047.1721 12449.5552 12404.8215 9377.619 9377.619 6571.8987 14941.2382 7897.9544 5494.8783 31986.3937 4332.3398 9124.5592 5270.7033 473072.1795 5199.6193 15904.9171 4366.0933 10689.3481 5281.3355 4743.4566 8740.8818 6119.8702 8350.0362 118170179 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 91009.4615 49545.3987 53672.2134 9978.6377 25603.3372 78066.3219 54478.7343 85754.5722 57647.5392 98149.741 1275694.0843 37209.7156 51285.0842 90327.8546 109996.1977 109996.1977 15894.6615 129915.0856 30368.6273 35791.7168 41314.8206 36481.8371 43197.76 66336.553 58806.9985 26739.8302 74635.895 32511.1367 70125.7313 23043.4804 36287.0508 42188.4376 42449.9699 29717.7895 70984924 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 91401.1595 130449.0242 47483.3742 8134.1208 16999.1078 10657.306 105689.4836 12369.0422 52975.8517 43351.7157 64842.4735 19737.3555 470914.8888 47327.4237 88098.9763 64443.6263 45534.8278 45534.8278 111251.3185 66785.8051 37832.056 87912.6902 183653.6982 31810.8658 73319.9584 22488.5569 19688.42 29478.6476 84258.5483 29180.1609 26999.4045 35314.3986 29701.1674 19375.9282 21287.5562 90656006 dsrB Sulfur sulfite reduction NA Desulfobulbus propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 5318.6173 1993.8115 2614.149 4863.901 2536.7922 135304.927 3724.7222 3367.2737 3367.2737 9293.0694 3948.3636 11507.0094 5990.0884 5690.2029 9554.0887 6378.1116 6644.8348 3429.5491 3306.4242 3222.6706 2623.4084 4911.784 296537094 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 50914.5397 15714.4658 31884.0012 7673.7433 7036.3679 14221.485 10888.2752 11433.8318 10062.9961 20764.5058 99832.0222 15452.9798 26346.4531 46470.3374 25395.476 25395.476 7439.2429 16587.274 11280.3874 22146.8948 30277.8424 14945.7092 9534.6896 8368.433 17144.8929 25671.0196 35671.0525 30196.2119 28401.8249 8103.5234 18236.5433 14500.1074 5760.3897 18788.512 71848480 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 29676.6304 18408.5584 11139.2489 153396.0873 9845.3392 9707.6461 9726.1897 17309.7264 5132.53575 562789.1433 12746.1407 24714.1644 5479.2937 5479.2937 10071.7871 13561.3817 11879.9366 13628.9964 10481.2826 6116.882 16627.6131 4560.2971 27493.5184 7917.1384 19683.4226 6465.3248 10337.2383 8313.7028 25156.9513 23112.9803 121590129 fccab Sulfur Sulfide Oxidation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 10831.806 21891.3908 8966.8528 3371.5364 3443.7192 2261.7222 5788.3856 6049.0414 4683.7254 187821.878 6099.6301 10883.0178 17634.3964 8411.4976 8411.4976 6103.1636 12707.4655 9493.1648 12702.1112 6317.4381 8341.704 3518.3221 5274.6253 13504.5609 5114.044 26636.4975 27215.4657 11349.3788 4639.3576 7624.3388 6565.8464 4324.3582 18056.9457 76056957 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7476.9807 24588.7077 4840.196 19824.6229 3035.582 33023.4604 10105.9527 15651.0244 5327987.2896 13574.632 5658.1347 22803.9379 4943.0636 4943.0636 5697.8148 16636.9939 8772.8549 8085.0945 7810.8408 6648.4049 5294.2187 6132.4931 7388.9192 8704.739 18582.8512 5982.1035 16395.2369 5214.0277 7490.356 11992.361 4329.7808 24544.5933 35214218 cda Carbon Cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 5495.736 8726.2782 5791.8882 77709.412 3119.8925 5505.5255 4613.5955 6163.118 6305.8559 3687.2772 106043.1171 6706.8763 5707.442 6106.7541 3044.7949 3044.7949 4632.7052 10506.8317 13775.0331 5522.6769 12066.5403 13454.0245 3050.8568 3773.9632 12304.9706 8382.266 15374.7001 5593.7081 10590.0805 6965.9939 6476.232 5322.631 4248.9491 7768.8966 68264127 mer Metal Homeostasis Mercury Detoxification Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 13601.6143 7643.5128 6678.6901 3780.6274 10242.4775 11008.2955 13746.2152 12160.7851 5373.6694 137829.3239 7196.3282 13075.476 40703.1002 6978.9526 16595.5407 9188.5772 11403.61 39296.5184 8950.6495 4617.5837 15877.1114 14808.7489 5324.7572 25305.3163 10541.1423 12430.6101 10170.3591 7122.5996 7340.502 4539.654 9378.5742 110746769 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus larvae superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5426.6593 12059.2944 30345.024 407780829 nhh Organic Remediation Aromatics Nitoaromatics Oceanibaculum indicum P24 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Oceanibaculum;species:Oceanibaculum indicum; 18074.4181 230560.2487 54230.5771 69710.6218 20567.1367 4876.0363 15271.8763 9677.0549 9738.0297 27101.7351 27370.6781 426748.5475 24303.201 31742.3991 135168.0099 30128.6233 30128.6233 9377.2545 36854.9768 24788.3012 10925.7363 41902.3176 13853.4373 11146.5827 19788.185 54285.9878 17575.5618 71212.0994 59553.6828 78457.6134 21293.8981 20324.7853 17650.6524 7590.4606 40528.9968 299062671 gdh Nitrogen Ammonification NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 10383.3264 7116.9085 9809.1101 16299.259 6700.8793 5174.1446 70080.4076 27407.0706 7655.6715 123506.4473 11399.9527 8069.9378 13506.4382 10962.4418 10962.4418 4625.6641 13262.1241 6057.3677 9564.177 9281.5484 4360.86 108770.683 19712.386 5894.1598 18511.7042 7003.3379 17555.7188 3064.725 4151.5903 6116.5091 3750.6427 339325889 catechol Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 112084.5527 18329.495 182187.8585 70192.5533 39517.7088 15126.747 143303.1388 48609.2006 61922.7877 33491.0001 46964.2016 34417.7515 1876381.1809 44518.0602 62117.9342 69567.0629 36650.4522 36650.4522 44690.7826 44602.4573 39865.3938 69291.1749 62696.5612 97751.7465 20851.8823 29178.9971 52517.4374 40380.9939 77846.4114 55250.49 55208.3084 27940.1493 26640.092 54680.2047 34491.422 78996.0075 55791936 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 72229.2678 6668.9149 13867.6279 30924.1056 11928.8887 8973.4624 40229.3398 6907.495 31939.2751 37514.6571 31708.8169 297559.2554 39246.0479 39852.3888 59827.4997 22265.1174 22265.1174 15540.9372 29901.3069 12677.8385 14119.4763 23173.212 28377.4506 15333.0042 35644.8823 50560.6129 18977.706 230180.7435 27498.8474 34351.1253 23628.353 47238.3435 27760.4179 11450.0261 46232.8298 56967343 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 48776.8604 8129.824 59300.1514 6850.7679 189596.4856 4855.606 6732.945 5946.4609 3474.6127 155353.3295 10631.5773 6222.8115 4409.3423 7987.6738 7987.6738 6393.1292 9681.624 4739.4774 18868.4928 11869.2445 6493.7556 9275.6011 4142.4491 7301.9882 3600.4978 12347.852 10794.545 7319.0194 4069.4519 2986.6375 4912.1126 3139.1475 8987.8922 126460064 dsra Sulfur sulfite reduction NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 15771.687 42076.9004 33213.0973 19279.8056 9116.459 3177.6987 5384.0794 8384.3686 4898.3105 160894.8671 10731.8112 17153.59815 17472.2619 10822.1997 10822.1997 7865.4413 17755.4843 10597.065 16051.9755 6975.3234 9038.0959 3886.3348 5587.0579 16821.0139 28952.5029 22819.8753 9967.3427 18432.2852 6731.5192 7703.4359 6005.5798 10448.9276 16124.7973 151302153 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio sp. HRS-La4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 19045.5989 4111.3645 12834.5204 247149.182 46211.4701 42028.9497 15602.4623 7627.6658 4211.9943 153539.6386 6928.872 20206.2581 8110.5224 8110.5224 5325.3098 19458.8123 7367.6233 9218.5081 7908.9984 9616.1613 4815.5831 5584.0919 10829.8717 4952.9661 14036.88 6032.3787 13253.5402 4206.2835 10032.8703 54477.8131 23223.0127 11410.1721 212533495 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 16258.8607 12139.5448 18380.0481 10599.7274 7742.4046 7245.4148 27247.0033 13393.1259 13338.112 11927.6229 9437.6357 204836.8434 11178.9171 10561.7953 44048.8281 31201.1051 31201.1051 33406.1019 20472.1606 31872.1673 125580.352 16663.7161 20187.3064 9149.5902 19221.9739 18596.9723 21855.446 23302.7452 26416.6137 15447.2488 9033.4509 11414.9352 74738.1347 8694.3192 21082.5997 392952628 chnb Organic Remediation Other Hydrocarbons NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 3992.2708 59582.1657 6913.3401 20228.9729 8614.4706 4427.7913 2759.0579 3255.8666 8053.6273 6066.9693 12972.525 2194.8289 336300658 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4428.3495 5679.9142 146990.9775 6483.0003 3891.3715 7333.9275 5778.0265 4102.7394 4741.9071 7204.3552 5272.6223 5272.6223 4174.5176 19980.902 5579.9414 15124.4768 7250.9703 4850.9835 3223.4355 3811.6446 18677.3061 3153.6133 16727.1029 12002.8363 8568.269 3357.6228 9365.4448 9039.9955 3887.1596 14413.1247 254271693 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 185960.4511 7289.7484 116336.3518 14140.8581 177674.5578 21739.8696 10502.7156 16069.8013 57239.2594 40267.0091 225593.3174 20130.24 27474.9573 29339.5464 20046.3651 20046.3651 13548.615 316549.0028 15413.2245 68920.9837 22710.7997 21791.1513 18092.2844 29486.8601 17633.0529 31581.2813 67035.1551 13068.7155 32208.3483 18474.7543 17232.0449 31029.5706 12397.4908 21445.2589 91203786 hzo Nitrogen Anammox NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 6422.4009 2073.1989 18405.6897 8502.3728 3295.2056 4095.1218 4639.3426 3945.9899 7588.4031 9289.2025 214281.4106 14170.7165 6150.8163 137893.3813 2556.0124 6333.5589 185912.6711 10450.8237 4731.7632 6660.7913 116475.9832 3044.5911 3737.0597 2421.0343 5644.0857 378784449 terc Metal Homeostasis Tellurium Detoxification Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 58838.0438 5171.9711 27661.1858 14462.9247 9759.4262 5863.507 8934.2273 3338.7549 10469.1273 11612.9515 5244.386 265978.9634 9430.9522 10410.9249 7641.548 7476.3614 7476.3614 9870.6469 13784.7368 14398.7436 11687.6768 16009.1842 12566.7415 7368.8354 5604.0382 20852.4761 6002.7384 22774.3663 18872.4617 16370.7332 8383.1554 9942.7443 12392.2053 6739.7298 16052.2665 59894154 hsp90_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 8137.51 5259.7718 13617.3665 4856.7569 5893.5338 3447.0507 6984.8273 7438.2607 4490.0719 152293.5899 9143.4796 9212.783 22482.9104 3315.9832 3315.9832 5312.8822 17368.6087 10160.5275 8310.4851 11953.2368 9619.3236 5533.6993 6138.828 11552.6946 4946.2356 22235.2652 10725.669 17460.6903 5817.4409 8506.0754 6273.8727 4331.3045 10685.5416 78102301 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7967.8291 3375211.0658 872008.7012 4045.0511 237197.4731 88179961 pme_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 17433.8832 17250.2398 12719.8698 15869.0501 8829.3804 8360.0243 14384.7892 8388.6514 13896.0171 16891.0197 11496.6617 308150.4864 17689.2233 33021.8239 13863.9113 9977.8203 9977.8203 13890.1789 34806.5899 14625.9722 23093.3649 17561.0549 18686.806 10445.2986 8716.5361 23574.4248 10254.9747 31642.6326 18302.9076 23317.7482 9566.7329 11088.1718 10696.0098 11648.9058 25392.6952 291580925 ppx Phosphorus Polyphosphate degradation NA Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 10723.5978 17842.0955 9596.697 9137.8054 18287.6847 4329.6838 4627.1453 9047.7053 5992.1936 5161.5961 194782.7505 8984.1374 4131.9516 8342.5026 8342.5026 4657.937 14570.5643 10219.8608 8091.1396 13122.8165 11979.5331 4706.0757 7422.3873 11778.638 4635.8484 16895.8825 10708.8302 14144.3926 5157.0535 5807.7449 11486.3354 6477.7378 14776.7644 237846130 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6771.8661 8251.1741 4357.3275 2106.9132 2106.9132 8587.7974 11710.4984 5059.6524 2753.5193 7798.2251 12531.3186 3511.7323 118174756 catechol Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7313.9936 3643.9644 2514.1279 3683.5746 4182.9505 8800.9571 68926.9914 5321.3482 3919.7124 70747.1875 3458.5353 6341.8028 6414.2604 10100.4356 5622.3433 4578.0755 2752.3115 7024.5544 2420.9975 10240.6115 5940.3199 7748.9482 2722.9257 3619.5165 4003.1944 4564.1042 9700.8844 387876417 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 19758.1775 116876.4468 7991.2997 29000.6215 5120.0333 37017.1915 8384.1461 33614.0281 16076.3582 30482.0011 43585.7681 115303.345 12126.9732 11192.8832 46347.6546 16190.2493 16190.2493 46031.7971 33369.199 20234.4677 31338.828 61380.1481 53406.1105 4384.6449 25094.0992 32807.2272 50535.6561 24027.0076 52063.5218 22494.9851 7757.3641 15271.1361 9747.0777 9823.1879 22404.9145 340346554 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 6673.4098 261857058 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22440.7263 10939.3437 83790.0164 3615.5955 3578.0628 12770.8376 4502.7054 5717.2616 8874.7039 2237.8773 3090.9475 383319346 mcra Carbon Cycling Methane Methanogenesis Methanocella conradii HZ254 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella conradii; 23940.6925 7523.2236 5033.6774 3375.6757 5959.9318 5899.2065 55149.7082 4602.7691 18558.0834 4687.6435 4687.6435 9665.3716 11062.2469 5479.4911 13330.4701 7573.5675 2938.3898 23977.1679 7723.0397 6409.1306 1983.3074 4601.0904 3240.546 296022460 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 24849.2396 224704.4528 11450.6785 11056.0163 8261.7141 20777.8469 21087.129 2323.6337 22335.7875 12106.7971 21760.6369 254220.0126 10303.2217 17562.6391 18264.8782 12772.9767 12772.9767 5190.8519 47418.9822 21613.0829 14183.3782 14211.2567 66265.0351 12118.7425 9245.9907 14411.6011 7741.9135 30486.7903 17312.3684 24185.9391 18920.8284 34481.4551 34769.4506 8940.3416 7297.9156 340247325 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 16984.8215 8266.1657 5191.5135 7827.609 6032.7177 6350.384 4912.3046 4912.3046 7095.3935 5076.8073 5414.8905 8754.7734 6525.8679 3343.0293 4199.3922 3470.7557 18294.4888 8977.1837 9542.7434 3678.6731 5527.8097 8299.2698 4005.5393 9574.984 193081918 aoxb Metal Homeostasis Arsenic Detoxification Marinobacter santoriniensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4245.0537 4056.5219 14346.1057 11294.2953 389873175 mauab Organic Remediation Herbicides related compound NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 8227.7691 328504.3931 7969.8011 5506.9767 24536.5185 4486.5089 79735.2474 5747.1509 5518.1943 18237.3047 3894.5898 3894.5898 4298.6894 20438.4164 13621.355 21608.5171 3978.2116 4947.0608 27961.7495 4195.3083 13219.9651 9793.8985 8196.2799 9475.413 6565.5062 10624.0235 2598.6294 19822.5228 119391433 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 123359.5389 1454880.272 88998.8631 184821.2422 45381.4522 14763.7708 45284.8118 96788.6688 88465.3382 37253.2767 73030.6654 61475.8164 1506463.252 59483.8621 182185.0215 91221.3894 75104.2668 75104.2668 63496.2033 102812.347 62484.9558 109154.0092 166377.3905 207498.6638 30000.1463 49700.0032 48126.3387 61279.9812 182670.1736 70999.8141 86769.5617 39703.3296 84966.8109 58978.2503 382112.486 88078.9958 383333215 vgb Virulence Antibiotic resistance Degradation Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 4270.7995 20111.3036 7400.4689 56871.1559 3192.1788 5280.5546 5178.951 4238.5956 5433.5218 13128.9211 99199.1207 7461.1146 4860.4393 12195.9695 12195.9695 11675.4986 5651.5324 17335.5486 5941.6079 3686.4986 6157.5543 3953.4264 8345.5532 8338.9361 8110.9141 5323.5462 7005.8119 14425.1058 7298.4727 6699.7958 328948240 amyA Carbon Cycling Carbon degradation Starch Treponema succinifaciens DSM 2489 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 9029.1988 20809.3305 11446.2028 9160.3098 3425.5015 3425.5015 4160.3755 5631.2392 2303.8362 255300300 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 10023.2103 8942.4001 33311.9774 9471.174 8595.8782 11472.5786 11418.5737 5224.1927 9860.5752 9252.9472 4720.5544 219635.4917 8864.3761 15227.369 14620.6963 15728.9103 15728.9103 6406.5854 19922.5701 20053.8535 32176.2743 62416.4061 19235.9826 3476.7461 6880.7285 45252.4485 8984.8957 22300.8704 12216.882 16930.6989 15555.9801 12417.1028 10148.8989 6664.0471 6656.5834 371552168 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 39798.6176 16394.7487 41426.02195 35309.9286 17117.7609 15238.66655 18184.9985 15355.6905 378343.2717 23117.37475 12917.30235 14934.23475 32814.84155 7933.1355 16796.6851 25985.28915 10039.2872 11836.81815 12230.80825 8136.9879 19418.8304 196482314 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 7842.0212 2061.0731 34918.6502 3570.0949 6944.3074 69649.3111 4041.6931 2542.0377 2542.0377 6827.8223 4152.6974 2679.8846 10292.1387 16748.7007 5553.9488 2585.5794 329302398 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 26857.7473 41172.3406 9660.7911 28800.553 10837.6566 17752.8591 39885.5948 7819.6682 16231.4726 23179.1163 17907.794 1775088.4012 18065.0307 16149.4852 31935.6609 21298.3568 21298.3568 15845.2145 33585.8816 19003.2226 24215.2359 50146.1445 45800.4825 30840.9575 39058.8097 22429.7299 43300.009 147306.5322 72222.4651 38871.6081 69402.6687 24348.234 110510.9025 16171.2936 41070.6551 354569305 PRI Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 8182.6267 593119.6337 6584.715 5131.0362 22970.9978 12946.9373 15048.4179 19076.8035 13910.8494 6031.2923 74946.8584 6288.7487 6655.3434 18454.9586 8491.1162 8491.1162 7409.609 23003.6272 13201.8475 8531.1192 14263.7195 4184.4161 6464.1327 10679.7686 8822.489 15065.2424 11304.5054 12835.9759 21202.1562 15295.6532 46288.3972 23583.1266 17696.8707 335349825 badh Organic Remediation Aromatics Other aromatics Lactobacillus ruminis SPM0211 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 4781.7959 3785.1756 145235531 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9321.6715 31793.5223 3094.8756 4294.9412 20916.5974 6938.392 3151.7941 379629.8011 6857.4181 17469.7358 4935.03 4935.03 6218.2326 16007.3052 9820.8369 48214.7921 5919.9577 9045.1012 3374.4152 6753.9698 6870.7201 3451.2497 12281.5185 4036.3121 11455.4311 3623.9038 10759.5782 13996.7416 4134.7306 5744.6894 407321053 pcag Organic Remediation Aromatics Other aromatics Sinorhizobium meliloti Rm41 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 27794.121 22258.6925 8822.1573 28396.8392 9119.7329 18922.2789 17542.8781 13917.4115 15413.8047 37321.3959 22291.3765 339354.4889 30845.155 32708.6439 36980.3688 22719.2665 22719.2665 11390.3214 41672.3545 22760.7046 100465.746 43229.3089 42788.7904 21393.1333 25180.2503 29316.4179 32592.4797 66293.7576 59271.4155 72512.649 12318.5077 27005.2532 31224.9629 22452.0117 72534.8431 148239017 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 41125.6946 5040.6558 16931.6394 38332.4384 56988.5824 10047.4824 24312.4538 12313.6181 20437.5283 27250.0466 20577.122 816282.5487 149996.5963 25034.966 13333.3869 27291.6792 27291.6792 29052.9763 27547.1966 17364.112 13598.8067 51554.0227 24885.668 13601.1275 13209.0819 28299.6633 16122.8255 38524.4096 26434.7501 44937.4091 93065.8483 18488.5018 19887.6703 10088.9833 39736.1652 302199086 chitinase Carbon Cycling Carbon degradation Chitin Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 6946.7504 5070.5894 9226.8524 11226.0572 5115.2408 5521.4516 3804.5057 6290.4613 7999.4861 2825.6508 144463.7395 6551.7083 5984.3369 4582.7372 3044.2691 3044.2691 4878.7709 11191.8917 8942.9485 11274.9903 8867.7153 11659.4056 4517.4956 4407.225 10896.7579 3826.2432 16270.9275 4171.9925 11860.8546 6112.8862 4863.8999 7085.1739 3815.0735 14427.579 114321605 bphc Organic Remediation Aromatics Polycyclic aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 56007.2794 33558.9615 33508.1897 202545.2632 41122.2068 5509.8624 52713.1073 7182.1384 18813.8662 32592.7461 25488.7306 1729444.4965 41558.0721 53383.0273 161663.4393 69191.4679 69191.4679 33463.6518 40382.6773 31064.6648 29996.6839 91270.2278 7877.4767 4811.2924 46203.9649 67057.9251 21127.8292 51915.187 36715.374 42690.4113 33054.3144 17259.9369 32297.7533 21882.1855 12581.7908 333387754 nrfa Nitrogen Dissimilatory N reduction NA Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 4321.5321 2725.52 3496.865 3850.1124 3800.6335 2429.4523 2429.4523 2848.9235 8039.3862 4704.0358 4294.5671 4422.6348 10564.7504 5273.6927 7274.6443 3963.89 4369.7748 4963.053 196233226 amyA Carbon Cycling Carbon degradation Starch Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 3826.4785 3350.5012 10572.7458 2190.9244 69539.5309 1992.3742 1992.3742 3244.1291 8708.534 4025.1379 2727.2049 17924.6306 22938.6643 6333.1355 1973.6732 2857.9476 8727.682 1941.5723 23308935 cmci Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 18272.582 7810.9107 17668.7944 5635.4049 26328.6789 15893.1357 6766.4519 7168.3323 24845.4941 98984.8497 297156.9779 17585.3553 17879.8705 18203.645 19933.1395 19933.1395 12017.3714 28393.023 11373.552 39283.6365 27570.7756 19759.2878 19634.0233 12198.3215 25042.756 26999.8395 25699.1868 13851.0281 17158.7768 6576.9268 18723.086 17175.8809 14267.0337 37657.5559 260613801 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7689.2769 24770.1225 166062.6682 2449.4499 4152.5987 2768.0212 6449.7054 7599.2779 2683.3957 71414.8984 5580.7072 4960.3969 5910.6486 5910.6486 6757.3381 17986.478 8663.9956 6569.7624 14874.6464 4237.2893 6510.4036 8340.7446 6807.9851 15302.2508 15405.6825 9144.5976 10537.8991 9552.1308 6469.2004 8695.303 5318.8827 9300.4509 38427028 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 83433.3671 2057788.0078 171834.2921 40581.1438 35672.1807 10118.7784 117510.6175 50926.3574 61446.7189 32192.5 43603.6394 89947.1563 524737.9936 59116.1255 104402.6201 74685.4891 73146.9566 73146.9566 82132.5765 82706.2435 99842.7555 52778.3485 69624.9345 52768.4361 74570.1847 71499.4846 51938.7368 339010.2658 134457.9966 78389.4768 68166.0842 47496.2172 54242.9415 76741.7235 38799.9017 90615.7836 297156650 cysJ Sulfur Reduction NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 5785.6072 8686.9623 5925.1667 7231.7974 4081.7301 8678.5529 10335.0427 4736.5436 62067.8438 4380.6234 32619.8413 9207.8605 7759.6694 7759.6694 4033.9206 9514.6079 7220.0404 6802.9965 72352.923 5327.8491 3835.6621 6531.2832 55377.9866 5475.6502 28695.6062 9130.0631 6367.0151 5683.1624 12274.1485 3210.2 8753.5762 359837375 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 11404.4702 8128.6051 3386.7608 7550.5545 4787.8424 4617.5075 13246.6306 3225.8626 158690.7998 5689.1882 13924.6704 5702.0999 4016.6075 4016.6075 5875.0814 11762.3827 15481.9158 9806.5345 21981.0447 9101.3481 4515.0253 4106.7994 11200.2161 5371.58 31534.5698 14217.6604 10401.0435 9813.4234 9260.458 58807.3253 4321.2972 12807.1098 338751834 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 241711.8631 42270.6259 110510.677 22081.206 8748.8961 20871.7647 68566.5078 112588.4259 55079.8607 31809.7605 32108.2298 914434.7496 49211.9156 28616.8717 46388.656 36478.3986 36478.3986 18865.3274 64440.5517 50912.1666 49951.5493 75907.2961 26678.8998 41930.3902 66337.9402 29441.8108 104942.9244 243744.09 52136.8923 46863.7423 32454.7193 44926.5391 39300.3718 90935.6402 411940.3304 302673501 nagg Organic Remediation Aromatics Aromatic carboxylic acid Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3851.5348 3076.5878 3780.1371 5247.4007 21697.0249 21697.0249 6523.3128 4375.031 33990.3212 8635.576 2408.6552 2857.5703 7637.0845 193085163 fccab Sulfur Sulfide Oxidation NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 13534.4408 7779.5945 6633.0704 3813.3991 9062.507 9802.3919 12849.2565 20517.4402 19400.2926 122326.9608 9943.291 18200.1612 4697.337 7678.6809 7678.6809 5047.0253 17069.6448 17115.6707 13833.1341 14223.9909 5455.0268 5811.9447 18765.6753 8896.6173 10659.8089 31879.7563 8289.0343 15922.2961 5864.9956 8940.6039 14685.1233 15638.9547 14674.7257 334842143 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas aeruginosa 152504 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 26133.4547 7167.0876 57351.7972 36641.0854 28736.9448 23159.1599 79709.1253 4608.1247 33874.9025 79316.9321 20845.1341 1234109.6832 27851.7602 62318.7966 57903.9673 24723.8633 24723.8633 38238.3432 107210.6366 527356.1712 25975.4962 43160.8037 14111.9057 6762.3671 44361.7501 114836.9265 45740.1204 214077.5606 53564.8273 87493.4014 30875.9372 105794.3606 30988.4382 14400.6177 157363.4378 214036450 mer Metal Homeostasis Mercury Detoxification marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 238474.2817 22889.5708 56008.3533 70294.7354 191174.0494 72290.1415 71505.5945 66005.2273 39222.3056 60836.8921 93989.9706 95440.5961 1695916.1239 120234.8153 184910.3018 697825.0429 79030.893 79030.893 51033.091 134551.5317 60352.7478 515278.6833 257250.478 94416.1628 54855.5881 55615.4929 98545.5299 85799.8408 235850.4573 83621.644 97239.7136 43466.1654 68200.4927 105695.9569 102093.8988 93020.7338 361853516 chrr Metal Homeostasis Chromium Detoxification Desulfitobacterium hafniense DP7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5044.5011 9335.5071 9335.5071 5739.4742 334102753 pcpe Organic Remediation Herbicides related compound NA Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 25953.4562 18750.3942 8974.7248 16046.535 5819.4843 15076.8266 5139.0224 11865.5569 14624.8521 49274.1412 187252.3148 18453.6927 15203.4022 18142.4772 34971.9324 34971.9324 100579.4033 24158.9925 14073.2647 40903.5229 31698.6189 68560.1154 424465.4557 15550.8812 17355.6532 8226.2654 32557.4101 38145.6573 19680.7453 8459.9877 8656.027 10687.9032 17887.81 37527.8081 118589173 ppx Phosphorus Polyphosphate degradation NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 35402.7674 100659.7747 28606.0646 63227.3435 23558.4514 24040.5077 69815.2153 19143.8979 87362.725 118655.3905 161965.833 647064.0924 134229.1059 57978.1315 67885.5712 64611.2747 64611.2747 42233.3512 87722.8421 49626.5664 158814.8843 56457.8591 33893.0425 285179.1562 42693.0379 142317.5976 77809.0473 258438.9356 144055.3281 117984.6256 455058.6514 50855.2775 92493.5393 29590.3211 55526.9942 154362232 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 7085.2103 2193121.5356 5604.4866 3161.5096 6785.4869 6903.9768 12287.8678 90151.6122 8801.5159 4125.9266 11702.1719 10133.1276 10133.1276 13040.4011 9907.9738 12468.6556 16277.1511 12445.2378 4627.652 11187.3453 87545.3884 11248.8574 39607.4383 18393.3291 23800.3763 5200.7717 14622.4138 4757.6695 6775.7084 9989.6071 197712686 pcpb Organic Remediation Herbicides related compound NA Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 58127.2267 15221.1788 25019.8449 26588.0066 1234461.2707 40911.7317 21413.636 16777.2 19954.9855 33272.3044 18203.1604 469404.9617 40488.948 57264.6563 33142.1479 18830.2 18830.2 28807.8469 41758.3659 24940.8281 29752.8077 39646.4254 28652.0584 18042.6724 16614.9464 33188.936 21956.6319 78099.8534 32050.3546 83279.8474 17141.1155 39472.085 26002.5237 32719.48 37343.7905 294884123 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA50_4W superkingdom:Bacteria; 31960.7959 18799.5861 11761.1293 18224.7021 8440.53 5209.0299 9593.9095 6114.2914 12630.2415 27023.3077 141842.8389 9647.7047 56893.753 157202.5627 7523.1466 7523.1466 13671.182 28751.2292 21638.872 28138.4435 14937.7443 72896.2981 8337.8513 10519.4649 19171.4603 15670.4326 27955.8811 21467.4438 22391.7522 43755.2377 25143.7089 30380.6407 12411.8332 21356.8812 118424511 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4539.7397 2797.2046 5552.1226 4532.6198 5081.3318 5286.1694 43930.1447 10585.8662 7575.2338 2097.9392 4032.2859 3587.5146 319435702 limeh Carbon Cycling Carbon degradation Terpenes Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 236686.1551 142029.8248 211822.403 101116.4612 41761.697 20082.599 579019.5813 272810.0939 78827.7708 147344.4151 120015.8181 99351.3451 1787125.3085 150123.8212 277754.0333 141800.5796 184449.1983 184449.1983 60213.8642 108009.5142 72713.1531 73539.985 209986.2021 86904.6606 88775.3565 56282.9947 133754.211 171866.4117 231068.4831 202903.8652 96014.5845 74293.1119 71517.7857 84011.7271 192825.7222 133662.7042 85704853 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 121881.8079 238660.1711 6287.5981 7116.6437 11291.873 6619.9803 17687.6012 6615.5759 66737.9005 5580.0719 7842.0584 70185.1295 354609374 dehh109 Organic Remediation Chlorinated solvents NA Halobacterium sp. DL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 4033.0702 6152.3745 16586.9514 10825.2802 4855.3914 7630.9133 7928.2815 7928.2815 6451.4081 3261.5502 3835.7183 5660.7723 238488699 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 23696.65 14680.403 26664.6789 16333.9249 8199.6564 17078.6065 22541.4988 91347.8584 14353.7194 40679.8495 28376.7593 219126.9748 22059.4909 78536.5918 11822.9015 12076.4346 12076.4346 14606.9573 42169.0223 21176.6103 52867.74 32188.2483 44682.851 11098.0241 11414.7939 36146.6657 10687.8958 33390.6634 26292.2375 41419.7334 8652.9168 33723.6221 27208.718 99921.0369 93013.6287 115397631 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 14952.9136 9385.8215 9073.793 22431.2982 222329.5389 9788.1262 17823.5936 10782.7028 14959.4141 12074.8188 255729.5715 14402.0666 18176.4113 12264.6326 8322.4881 8322.4881 9834.4578 23009.6394 24047.7939 15899.4967 20814.2467 30570.8795 7607.3067 11297.2749 30749.143 8686.5734 34636.7581 33093.7022 22466.0882 14654.0546 11055.6048 15646.1065 8464.6941 76291.8073 118435499 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 8596.9481 2638.9073 4460.8831 6041.2971 7967.8772 63147344 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 26477.216 7883.0866 20935.177 104414.3224 53645.4288 15084.4616 10954.4736 5605.9476 17276.052 17641.8183 14899.151 2298272.273 103081.905 33386.5429 54284.9175 21078.926 21078.926 18335.8598 40203.1889 24497.4547 10510.951 45568.1665 21161.5866 11444.8317 14238.5783 50306.3082 10957.2118 64792.5156 69925.5306 50387.3157 12163.2521 16922.888 22166.0205 7191.7268 79161.0678 238701375 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 32401.3109 20519.5783 65266.9026 15896.3192 52446.1079 12906.2417 14412.1599 16062.4035 13133.5451 14149.2276 7470.3272 278129.7165 19544.1388 22032.8806 8523.7339 7558.1928 7558.1928 15480.2955 24906.3549 16210.5756 10133.7528 17198.9667 21582.4647 7565.7272 12879.8215 14257.5464 6930.3043 34420.7709 17389.3078 16579.5218 9992.9285 11493.9921 34451.878 8058.1196 20086.5065 226939584 ppk Phosphorus Polyphosphate synthesis NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 29867.6795 34470.8134 137090.5823 19073.0215 10589.4168 56471.938 3332.4951 13135.4306 23859.3838 10729.3141 1643347.2411 118905.3721 27099.2492 36748.7928 17547.2026 17547.2026 6658.5527 14431.0472 15528.4173 66446.6932 44843.0115 34958.3318 26007.0514 10952.0582 19077.6108 13697.6122 363043.1553 40297.3787 44496.5694 26921.9105 12355.0631 20994.2395 18775.9252 19487.4089 60475984 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 40294.6604 24492.2284 27121.4198 11106.3647 6606.7502 17141.4377 18730.5563 17321.7844 16418.8132 31642.3677 16360.9884 444365.6784 28164.0572 31774.9163 20293.7542 15398.4695 15398.4695 15517.0541 41938.205 23340.8559 34400.4788 27220.4215 58572.6899 15887.8811 16595.5095 28529.0622 12468.8893 71551.3393 21547.1823 27804.7194 16019.2663 33690.9124 25361.5397 15452.1791 43661.055 1183904 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 4827.9853 14677.2058 3150.6048 11544.6999 11821.353 4311.2239 3275.1549 61499.7669 6720.0656 5376.3169 5400.1558 5516.8537 5516.8537 3062.5983 8979.8866 6217.2722 4372.5625 5696.8862 6128.344 6025.4165 5191.162 8019.961 3065.5802 15145.6904 7062.0839 7653.0594 4321.5161 6037.0248 4572.6918 4283.6321 9339.3251 257710269 bphd Organic Remediation Aromatics Polycyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9052.8244 7167.3882 5226.487 9344.5567 7952.8043 7082.7734 4480.9183 8613.9435 9073.1913 4532.9393 218960.7842 12533.2657 9877.3263 9359.3748 3335.1559 3335.1559 6107.9038 17076.767 9809.443 9124.1036 11912.8447 11059.0466 4588.8153 5406.9391 11685.572 6284.9796 21700.9244 6499.7929 13225.4785 7362.8482 9014.2116 5933.356 6034.8778 13502.5353 365968763 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 23016.3263 2027703.9677 3415.401 13103.5976 20529.1371 13558.6793 11018.516 16877.3773 9883.1094 25307.2605 73823.1273 68098.683 68098.683 4759.9634 14722.9589 6817.6061 28354.0216 30955.3733 13144.4048 7033.1823 5648.4937 9502.5637 18059.1649 35145.4822 35644.8386 15728.2964 6740.1971 11622.24 9537.8134 15183.8219 9811.9687 395233221 phn Organic Remediation Herbicides related compound NA Enterobacter sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 10840.1293 46518.2442 31117.2548 6335.7572 7468.9968 7140.0056 8701.0997 5651.302 28274.358 8448.0476 77342.122 771799.3812 11772.4101 11629.6451 18756.7407 18756.7407 5202.1777 18403.9926 5828.8886 12829.2188 19093.2986 14332.3224 5482.5132 6150.5284 18233.1385 16101.9831 62705.3247 19853.789 13674.2535 34529.1597 7928.6538 58250.3617 10836.5925 33628.0952 91777987 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 158528.3785 39093.2368 177253.5 246489.6117 41363.96 16793.5496 87283.0573 104434.7309 119841.7479 105020.2412 160233.8045 123854.3718 3653762.1255 217320.254 176194.3735 286093.9871 171616.0841 171616.0841 144943.5736 190611.0675 100469.0093 231134.9263 165268.9723 170931.115 122685.2684 112077.7582 232006.6655 119668.5092 461203.9557 262512.7142 173967.3858 79013.6283 139782.7327 132013.6124 94455.7809 491928.3497 383337363 pcag Organic Remediation Aromatics Other aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 168138.9822 33157.4373 8215.6182 23446.7004 4709.6082 45409.0977 27480.1191 23560.461 144422.1054 43389.1971 66295.5752 861163.2727 73742.3007 105083.5777 126702.9969 62678.2239 62678.2239 177766.0859 83439.6581 50112.979 30751.0069 208856.2558 298874.3422 159234.3433 81354.5415 50608.1144 33657.6637 198387.8206 47258.8881 100517.1907 404990.0743 74846.5763 75848.7969 117424.7514 81271.6399 371956511 pcpb Organic Remediation Herbicides related compound NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 4080.2738 4969.2356 8196.583 3512.7988 2378.5729 3072.4059 6303.8234 6451.1539 8484.0892 105253.4505 3417.6008 4463.9927 4271.5515 2738.9657 2738.9657 4331.1395 6638.5585 4282.3597 9630.6662 4632.7516 2854.8821 5324.5835 2755.7632 7993.4705 5034.7603 7410.2393 4474.277 3445.6915 3219.2272 126727825 SoxV Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 73535.6669 40491.2423 19039.4755 20559.9509 65559.5917 812707.1709 111242.6163 34366.1508 13728.2561 22811.2871 24091.6821 20350.7922 426102.6086 19584.9199 18436.4591 295776.111 16860.4605 16860.4605 11564.2209 45663.9282 21427.2915 79765.5757 34643.3084 51741.4199 13038.3108 18285.5739 45350.3675 18262.1719 48769.9456 34106.4669 51507.0012 12745.5924 22374.2585 30225.5536 13941.7308 19873.0629 325283132 amyA Carbon Cycling Carbon degradation Starch Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 59186.4726 29802.2039 13662.4416 27366.2462 8689.6696 91988.4878 713162.5923 42215.609 27061.046 174427.0569 67827.6113 385828.4633 96106.4241 33351.8834 73284.5373 39842.899 39842.899 18648.439 63430.6377 32351.4734 39865.268 49876.8979 191382.1307 26264.2937 20281.4355 47350.0034 85919.424 131629.4144 27132.3615 38205.2768 23858.1877 32258.2166 45887.423 29640.558 23778.3175 338169503 cmci Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 136369.3275 13151.0499 354614.2052 30916.8341 526158.8252 16138.2194 62144.6256 44340.4726 28156.5875 45260.7001 74065.6693 63485.1596 860824.0451 205318.409 45470.4045 70948.9505 54699.5059 54699.5059 50913.8003 89766.5992 86399.4567 646191.3596 106851.9554 91998.1078 106252.4632 42670.017 68464.0364 79357.3347 170049.4303 77100.4994 112127.3301 37295.2979 78375.905 55984.2458 29770.6636 71110.1711 261285854 endochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6730.9438 8354.7249 3514.0223 6941.7881 138597.362 4557.66885 12712.1976 4540.0653 4540.0653 3399.2198 6451.6296 3892.8193 32432.2775 6129.5342 13349.0523 4068.4883 2578.8877 6353.023 378550097 amyA Carbon Cycling Carbon degradation Starch Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 9834.444 10452.453 6838.0134 13233.1084 2496.9788 3075.056 6470.338 3168.3374 69200.4662 6020.5884 2850.232 2850.232 8761.8719 5076.8281 3974.5004 6632.1753 9756.6722 6521.8073 8550.4078 2279.876 7020.5492 14549.4303 373500837 amyA Carbon Cycling Carbon degradation Starch Prevotella micans F0438 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 7678.1939 4786.6384 4289.8913 5706.3302 6346.3215 8842.2956 3553.3681 5430.7639 44044.2127 8966.7123 164911.1208 9073.6921 6635.2946 4977.6075 4977.6075 4529.3804 18532.5337 8855.3344 12122.7267 14418.1563 17644.0176 16522.4343 7689.6803 8267.4248 6999.9356 32530.5465 8774.69 11242.0464 11028.2141 8902.3398 11209.3018 10052.737 6645.1188 116621213 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 96537.1842 25883.6765 55672.5469 103580.8465 52411.4018 18872.9828 54033.9706 43353.9424 32388.7615 81160.3389 97523.3571 56276.5803 1257154.1585 56467.5053 84483.993 61163.7023 116805.1921 116805.1921 57720.4648 89329.6137 54487.0418 50998.4936 85555.5904 112453.0444 59982.7398 49681.8929 67605.2227 58728.0216 171710.7221 104589.7528 82376.2872 49330.0679 41878.7932 82354.1269 41403.4952 88665.2638 211584244 chnc Organic Remediation Other Hydrocarbons NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 34274.5238 12717.7256 3249.3961 3909.6769 8238.6608 3153.3762 3153.3762 7172.0281 7933.7669 5343.9761 3743.2547 3238.4446 8187.286 29278.2108 5403.2375 2445.296 3075.7212 4912.0981 33320448 dsrB Sulfur sulfite reduction NA Desulfacinum infernum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfacinum; 18753.2211 13690.0984 10338.0001 24812.7852 19900.2633 12410.9741 68467.5173 7303.1285 15664.8153 21338.727 13083.4338 222328.0847 22223.173 20449.9039 15555.4232 17281.3195 17281.3195 8454.6999 20539.5613 15322.2837 13125.7651 21576.0724 21043.333 12552.5083 10450.3428 18505.6247 79291.7316 44983.3107 9113.4324 20701.3254 7601.8419 13376.0365 21023.7181 21723.1413 22139.5801 148642962 mcra Carbon Cycling Methane Methanogenesis Methanobrevibacter smithii ATCC 35061 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobrevibacter;species:Methanobrevibacter smithii; 32224.1211 3277872.2533 545809.3955 5156.8219 10849.7272 3119.7357 31570.2381 8728.3328 282092.538 7731.7076 10397.2724 8155.0853 13227.05 13227.05 98320.582 186234.5679 14087.1044 13368.5718 13668.8411 9849.5734 13671.0471 11043.3245 23149.6732 33578.012 57883.2603 28017.3051 33472.4697 43519.2945 19170.267 109007.4882 5365.4108 5369.7331 373461394 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 5266.3245 4467.5309 2301.612 5861.7846 3878.6778 5622.8325 6572.7317 3221.8341 154802.9185 6594.2462 5121.9506 5156.977 5156.977 6572.9112 11100.2472 8059.6768 6330.2587 9402.5043 7279.4887 4161.5636 4218.516 17159.2855 3116.3872 23584.8641 5185.3866 9892.4351 5656.4134 5576.8339 6272.2833 18887.0365 9537.8537 375106676 amie Organic Remediation Aromatics Other aromatics Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 6614.9914 20221.9707 3871.8049 6433.6876 7592.3742 7517.6783 13238.0149 7306.1007 120230.9008 7529.1197 12871.671 7715.2963 6876.2093 6876.2093 4495.9224 19802.3506 6996.1379 10786.5326 6999.5309 5246.6641 3652.3726 3128.8991 12338.0418 3205.4661 23456.3481 14016.672 10335.1298 3272.188 7739.5301 8459.0726 8890.5348 11023.4466 119374199 FBPase Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 205931.8798 68437.9972 15080.9096 74113.9776 16490.1674 169852.2922 23418.7792 21207.8977 30100.5282 54294.7194 67331.9811 419497.6265 110306.7371 126108.0804 59165.5482 31243.1056 31243.1056 40825.8871 76382.2676 23947.4468 51254.3505 99311.8658 24361.8714 32112.2549 61921.4752 58666.156 23857.0463 123337.4109 112156.9567 42159.4283 17273.737 36977.0652 58863.4184 69847.9435 259753.6891 17548359 pme Carbon Cycling Carbon degradation Pectin Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 50113.0872 30897.9826 15109.634 34991.8696 22088.0283 22210.2371 22402.6724 11121.9475 25391.8736 57308.5052 30879.2688 656007.1997 152310.5246 26137.7637 94508.9934 42356.2404 42356.2404 60746.2033 64397.1089 18944.324 28448.3879 46065.9844 123798.053 19718.7998 19952.8746 72044.1974 33128.3027 59526.3732 23790.7478 51539.6229 12206.5579 43859.82 33092.4941 68993.7637 52856.6349 171185960 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 20707.8168 13309.2736 3666.8628 157084192 amyA Carbon Cycling Carbon degradation Starch Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 18924.7782 13835.2533 16220.9219 4687.3545 14585.2794 11850.7789 14494.4448 15277.3906 18648.0089 10833.2062 547525.8733 21952.2376 20733.3459 8339.5039 10316.7807 10316.7807 10776.4803 27252.559 18347.2052 18194.8989 21487.2359 27960.9626 9502.6472 8677.1765 20857.283 20066.5865 34686.8646 14990.9086 23137.0959 10483.9493 11428.9247 13026.6314 13378.4132 28880.4369 348169682 ppx Phosphorus Polyphosphate degradation NA Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 8239.3577 7429.7861 16633.508 6666.3903 3346.9428 5080.421 11654.8106 8021.2495 6043.952 278435.4365 3467.4767 9725.9985 4740.8054 9253.9389 9253.9389 3448.0883 15570.4337 7416.8568 7543.9686 5050.1777 25850.6104 2726.3005 14274.4552 10384.9807 4835.823 31779.4982 7407.6168 6272.5974 3320.3336 7544.0989 3538.8322 5653.0698 99399.6969 46307998 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9027.1295 13209.8327 5131.343 8083.7227 5396.8679 4727.135 6174.5203 11657.3804 11338.4975 142096.764 9314.0328 12093.0474 14061.5305 3381.6975 3381.6975 6807.7106 16797.2353 6431.0813 9278.7241 9606.0766 23314.5684 3618.174 8190.6233 8609.8318 6265.9366 18392.5804 16706.4047 11910.0632 13992.4863 8270.5354 6779.4499 13988.9326 14632.0352 299524834 Sir Sulfur sulfite reduction NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 10429.8961 8585.0449 4316.448 5766.1665 2898.7735 6571.3126 8202.8617 3430.3476 179068.8114 18422.2013 6251.3675 7841.3109 3556.6653 3556.6653 4709.5816 10909.3052 7897.6771 8183.087 10694.0212 15364.9679 5389.4269 3820.5658 11271.3615 3816.9825 19251.6607 7872.2395 11302.445 4220.4786 5238.2496 7819.4135 4255.9192 13260.1539 212716784 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bifidobacterium catenulatum DSM 16992 = JCM 1194 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 19918.8051 24096.7562 6613.496 18947.279 8718.9546 8782.3941 12017.4917 17577.7237 19365.1458 17377.7024 23549.5995 199929.1564 24657.7271 31695.5685 16682.8797 26851.3128 26851.3128 7703.1388 29220.3997 19179.2357 33054.32 19141.8942 13603.8917 33419.6427 12685.3845 27797.278 10503.5251 41717.2029 13260.3957 28634.4192 9525.9963 12073.2787 16335.3781 10255.918 20242.9332 336314710 pgk Carbon Cycling Carbon fixation Calvin cycle Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 31168.8492 91133.9185 26861.0317 5861.0006 12717.5343 5777.3996 18551.4124 28480.3051 11463.3285 24005.9391 31464.413 16121.0413 3040354.52 20273.8488 47501.152 20239.7507 27137.4552 27137.4552 22233.0009 35371.959 18002.7507 32451.0679 42288.3639 29204.2473 15315.3325 19700.391 18566.9046 14170.2916 53178.8848 28527.803 29928.0021 14033.281 22506.5768 26307.0852 20464.466 29089.3667 299795986 glucoamylase Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 16491.2332 6838.8416 9082.019 8297.9938 10317.5569 5690.7736 13945.1181 5101.6865 4039.1212 7785.2056 11586.0451 150374.3896 4120.0258 5400.4323 18473.5783 11391.6814 11391.6814 21559.3479 29808.9805 10501.0707 13394.775 21432.4858 85788.0918 6727.4448 14478.8143 10321.9718 12597.9714 29066.2031 22359.9439 19832.3441 11594.9222 15369.335 17081.6398 7270.1499 9982.0095 186681596 PRI Carbon Cycling Carbon fixation Calvin cycle Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 1407008.3596 28480.3562 536703.3985 150323.009 4063479.7163 143242.4915 149721.6681 512219.4201 365051.5429 413697.6418 350704.9821 278382.3159 18705917.2549 471387.3104 548408.8046 646036.4603 529059.2101 529059.2101 565098.5949 438350.0532 604344.6782 514014.3764 964181.2857 634273.9802 537517.6946 477925.5582 725691.9716 361822.815 1386631.574 609312.5036 639330.3709 339747.961 282359.3354 446530.1053 462937.8961 490552.7692 192284125 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7814.6461 8886.2226 9280.4214 6146.6268 117248.2683 8677.3019 4445.0566 5719.0442 6369.0608 6379.2102 111765.4751 6316.3966 9007.2317 14162.3374 7159.5959 7159.5959 4003.4508 31000.702 6967.0135 6098.2418 19803.2753 7821.1042 5193.2343 4074.5455 38787.148 44401.0819 42383.2288 20595.6979 19447.0373 7595.4326 13413.8713 7999.3424 5484.2407 19389.1206 28629805 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6923.0957 21580.6628 28642.2007 4028.4874 4832.4969 2393.9691 7221.6606 8084.6003 3767.3587 182480.3585 8524.9332 8808.4235 6555.2571 4097.1905 4097.1905 5197.4743 15036.2296 11827.7969 12809.1116 12128.684 7685.719 5426.1264 5070.9666 13596.8703 4525.0801 20246.1884 18618.5392 13801.3487 5302.0448 7611.3024 6005.9094 5582.3646 11265.8932 302413349 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 37324.7501 8006.6155 4207.1049 7916.6912 11239.8016 19450.0108 19223.2705 10722.8867 185863.3171 12856.3195 89499.3411 17297.911 6415.6592 6415.6592 9870.3447 18693.0727 17754.6877 10599.1133 23708.4495 5576.7117 124235.4096 80506.133 18577.8713 14729.2812 38505.5208 17380.3472 14140.9983 11146.0853 9651.7573 15442.3105 36043.0399 12519.1344 270298598 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 31765.8822 75333.8539 16697.3377 18362.1179 27230.9177 6560.0691 58121.4107 79724.9501 25931.3624 41329.1308 22104.5557 25493.9438 448395.0798 32648.2903 66380.742 41850.7944 61202.971 61202.971 16150.3236 61771.7124 34560.7588 38684.0017 56166.3773 48560.6219 19399.8939 27389.9602 48426.4721 37132.9607 106310.2072 58726.5972 53673.2935 35641.6263 23500.9639 52247.8054 34075.005 30296.6911 126739192 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 19498.0704 16472.2126 10156.3359 9494.6958 5447.8783 58766.143 15930.7381 12766.0829 16769.4816 11880.5253 20096.1349 267493.3409 13453.4644 18333.2987 20184.5341 12233.2553 12233.2553 4622.0939 19818.3406 16344.7372 13592.799 16996.565 15786.5997 9321.143 12265.1594 12503.351 9237.1999 30253.6441 16274.2854 21018.0403 6415.1637 10428.6695 10856.4858 9312.7614 33648.378 356659507 vgb Virulence Antibiotic resistance Degradation Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5782.8084 44246.4119 10731.9445 10173.5589 4559.8236 3991.1596 3949.8664 10685.0078 7065.5512 5653.0837 216020.4784 11024.0974 4841.6921 14824.6024 3768.1216 3768.1216 4044.1069 12343.6292 5884.6022 4448.7128 7359.7512 4709.5271 3182.765 6033.2004 9263.8548 5990.7314 26060.6495 10690.0457 11342.1584 5471.5247 12819.9193 4064.0291 4135.5903 91695702 amie Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 19405.3011 12537.1189 10495.0496 7065.4429 12631.3875 9591.2576 4686.6975 6649.2038 15219.1288 24436.7814 1585727.0616 9612.6179 19458.8384 21037.1501 8783.0055 8783.0055 14364.1669 25531.9059 14998.4093 437125.6654 18883.0256 17918.3046 10518.0434 9940.63 8814.3242 8304.4926 37696.3846 16380.0584 20797.7081 7527.1494 15521.8852 14511.2522 13922.6686 39470.5563 260881610 phytase Phosphorus Phytic acid hydrolysis NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 7263.6076 892820.2009 5936.3282 12440.9938 5181.4067 6617.0973 5777.9785 5121.6208 74951.6961 4115.3387 128754.8261 11807.5201 7079.7873 4699.2506 13506.6316 13506.6316 4452.6597 10820.1505 7943.0992 4457.3697 10370.1807 8032.3615 4605.3019 5221.8957 8798.2943 5904.9567 46690.7306 7132.4231 9327.7165 6546.0477 5209.5496 4925.5553 5657.5839 7250.7119 385183709 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10935.139 75420.9344 9066.356 12201.2564 7381.8238 4764.6817 9274.1033 4547.1186 6811.0865 15065.5784 8468.6002 164931.2981 14731.9766 10805.0086 12940.2307 10222.752 10222.752 44142.3474 18662.7219 11422.343 36092.7541 13245.9736 9273.6969 5524.6959 6554.4789 33756.2882 9266.7966 25428.198 38442.3461 17989.8499 6953.2719 12331.7219 10932.2394 7662.622 15723.6727 149279875 exochitinase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 12581.03505 6708.7751 13549.78685 7822.93525 8415.8214 6708.0064 3720.33695 10799.38855 9743.83726667 6433.6428 143549.188 7878.7766 8239.30713333 14679.2796 7623.0813 7623.0813 6368.40605 14493.0403 9197.21583333 11223.59366667 13640.8306 14861.0675 5738.15705 7224.92 13204.65325 7512.997 21107.5874 8499.425 14742.7679 4274.47273333 6129.7801 8240.5356 5202.63893333 10069.80006667 220908224 terc Metal Homeostasis Tellurium Detoxification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6115.9168 6747.4171 4177.0811 4211.2982 6354.602 5860.4348 3373.7709 126730.163 8159.456 6412.6148 3093.4602 3093.4602 5303.6422 11921.976 7349.981 6164.5224 7984.41 10036.0695 3078.8428 3980.9814 9315.5421 3367.2414 10831.1727 10235.3822 8680.5436 3085.7984 4492.0324 5775.026 2949.2851 11767.8369 225793556 amyA Carbon Cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 135478.1193 706924.1558 21091.5762 13647.3158 10767.4164 4933.1716 7404.6893 13430.5605 18810.4946 3749.8538 9052.8259 19352.5744 5560.6953 3558.3748 3558.3748 4201.5352 11946.6909 7776.0156 138867.3376 7600.742 127554.4161 3573.0035 6316.7272 9545.2931 7097.6585 50700.0202 49699.4779 48290.3087 3331.6631 7289.8884 5433.6372 4557.5211 94647.4404 54298286 gdh Nitrogen Ammonification NA Legionella pneumophila str. Paris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 8641.1239 363281.4856 8688.6319 16505.1448 38222.3 11251.3555 4571.8365 9134.4356 10060.944 7712.6262 360955.4797 6453.2673 7569.1114 12463.5018 13307.3352 13307.3352 7288.559 22924.0489 9863.8365 293616.431 17561.4283 38682.9097 4752.1761 5468.7139 13631.691 35006.7712 47976.6855 14064.6161 13499.7843 171165.449 16280.8351 10527.8022 8443.6064 14672.8502 158336382 gdh Nitrogen Ammonification NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 6673.9976 189871.7503 4707.5286 4160.2824 357216172 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 5151.2324 39264.8187 5482.5673 16263.356 1973.8456 3012.6184 3648.2282 6435.1691 60428.7319 8021.9029 286118.0094 17794.2247 17794.2247 3283.0492 9896.257 16880.0783 7128.4487 6763.3901 2443.7219 4161.8935 5563.4622 3386.1398 10732.0804 7703.7106 1690.1717 8390.1991 4029.3601 2979.7659 6270.6543 209518280 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 18437.378 7241.1564 8674.813 5180.9325 9608.9456 229416.8632 13179.1182 34843.4237 6722.5577 167701.6046 6970.5905 7938.5842 31561.1382 13446.8067 13446.8067 7031.2871 22512.7885 17806.331 12451.8039 18210.1724 8557.3726 7685.5673 8600.7884 8638.998 13829.1994 14641.9511 13328.7815 14679.3837 5808.0844 6846.3881 30440.3632 5737.0658 35992.5717 283481876 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5834.0636 12936.615 5530.7019 5273.2663 5566.2103 5402.5938 4446.8288 82230.769 8613.0773 5405.6326 3140.0714 3140.0714 4452.658 12797.8841 10229.2757 5307.1192 6512.3728 7847.0848 4086.638 3573.9945 13606.4478 5182.0087 18451.624 8020.4397 9813.4764 4463.4784 5547.3287 5275.6416 3948.5711 14145.3357 145236879 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 4612.4352 5387.2229 4189.4479 3528.3402 4258.4251 4695.6772 2168.6669 75892.9074 5792.3326 5045.1853 4198.4523 4198.4523 4389.4556 8883.6605 9913.4011 6157.8043 7098.5194 9448.4812 5334.8242 5430.4716 6502.7091 2445.556 13094.3592 6500.7355 9944.3895 3404.6535 5755.9294 7548.0104 4159.302 7154.8964 403066662 mdld Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 11308.5366 5329.9036 8064.3825 4629.1434 3918.3443 3946.2753 5579.7411 2684.5564 239590.8765 6858.777 6195.7953 4266.4718 4266.4718 3206.4289 10747.182 9156.5499 6022.959 6440.0942 5625.5285 3438.2646 3119.2859 8766.5422 5106.1662 13530.824 9179.8222 10671.9073 4803.2851 7778.2401 4206.9852 11203.9559 170936249 axe Carbon Cycling Carbon degradation Cellulose Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 18550.3022 13149.6228 19395.2643 12739.9045 16736.0709 4850.9845 11958.6709 16636.1065 14903.1346 10460.871 24395.1259 8367.0463 857278.22 16685.5026 21760.4898 14818.2552 16618.0513 16618.0513 8488.2972 38109.6769 11121.509 17529.9029 356714.0301 12821.0541 17485.5458 12060.304 22866.4697 14662.1293 37391.6703 15980.8868 25526.9537 13831.9316 23226.3386 20161.0873 13388.6525 9797.5723 171686642 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 6176.5565 2478.2287 2064.6761 2599.7476 5090.2221 3819.44785 2431.6437 107601.3333 4833.7108 4534.7489 1951.86155 1951.86155 3708.03755 9183.94325 5461.7707 4751.0317 6360.4125 9564.8891 2815.2319 3621.8068 7344.15655 2099.1402 5878.60635 6211.83135 2279.46745 3457.42115 4190.10985 3569.184 9105.5442 217977649 xylg Organic Remediation Aromatics Aromatic carboxylic acid Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 30852.0625 197828.6641 13157.6186 29076.8034 570137.1661 13411.3956 18137.5896 70151.0892 20926.6841 25807.3398 70020.5015 19658.776 392536.4206 25584.3607 24526.0422 29157.5638 23776.9157 23776.9157 20837.0548 31553.0607 26592.1665 24387.7184 27370.147 35425.7134 20681.3885 13958.3454 33240.879 17707.4079 65857.6128 24612.5764 33380.2309 14503.895 18940.9094 23322.0865 20672.6718 62518.239 55231469 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7509.1239 8458.2056 7823.5123 7551.3635 7944.9111 6054.8595 3980.8354 6813.279 9197.4088 4009.465 5422.6337 15057.2621 7392.6511 7222.5288 3549.438 3549.438 6738.0613 13501.0282 10031.534 12379.3251 14561.662 6121.987 5491.3105 6621.9897 12361.0498 4353.8604 20448.3675 9280.1886 12604.7454 4765.727 7716.2719 9765.5314 7668.1598 12872.3715 223019593 catechol Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12729.006 11656.7696 11172.5619 7922.0455 20804.0569 5383.9191 7314.9487 10245.3654 3510.5737 7901.271 10424.1751 4804.5717 233644.8343 12612.6857 8426.095 6484.5622 4461.7636 4461.7636 7253.4103 16877.712 10541.8516 8893.5054 10650.8554 36644.0313 8317.1608 8963.7556 12636.1371 6224.9976 18530.786 12925.0915 13344.143 6561.2837 9743.9114 8618.5968 9737.9755 17551.4005 296115738 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 234301.9255 12593.9034 287857.4606 57943.1828 2504139.2121 13856.8006 59969.8328 77915.3313 37187.8619 45973.1166 78172.1429 47287.2313 1681013.8259 68923.7522 136277.7103 42880.0187 82008.9732 82008.9732 53442.3149 69386.031 52044.9776 87921.4142 50725.0405 81024.0107 29419.6011 53647.0145 89167.7767 30036.8666 122462.5578 180840.6968 64243.9284 28027.3645 49459.0299 79292.1168 51841.1024 83958.4193 358753816 ara Carbon Cycling Carbon degradation Hemicellulose Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 9118.4482 9107.024 7131.6917 5064.6372 6153.0859 6264.9871 4206.6725 5694.6178 5694.6178 3300.8465 4875.1298 11951.3932 4356.2015 2374.5263 6322.4628 15633.7269 3322.369 3894.0491 256839360 amyA Carbon Cycling Carbon degradation Starch Parabacteroides sp. D13 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides; 5594.8565 7150.6987 7508.5944 2422.7535 12688.6741 4009.3417 5379.2824 65335.5715 5936.998 27409.1269 8974.6349 3367.735 3367.735 3726.2119 11586.517 8601.1878 44185.1101 14200.8287 5830.7388 3280.7503 5116.9942 11813.3255 3988.6027 16483.9163 8833.2696 14427.241 2982.2138 3336.5781 2171.801 5348.5462 332015042 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3370.225 15311.2058 3015.648 6216.7213 6893.2266 3822.5243 6876.4492 4226.8531 2639.8453 3060.2183 13151.446 5584.8974 2997.8813 3130.99 2339.793 5118.0366 33391353 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17746.2821 7994.8312 15398.3433 14064.9338 5617.1796 5721.1752 3642.5228 7621.826 2397.1466 91214.0675 7252.8709 9230.7499 5196.543 19209.9467 19209.9467 3536.5117 9503.732 7344.6121 8447.4611 4598.8511 7016.6732 2827.2522 6670.4677 10176.2203 3690.468 13168.2886 8386.2199 15642.9161 4176.8954 4369.3788 3245.3239 3376.1052 13298.7284 39935326 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13410.2993 8859.8032 8384.8041 720706.4301 5636.5659 7162.4802 22529.1432 6128.8536 233754.1062 9300.5278 14969.6531 3983.2833 3983.2833 3506.1657 10508.0854 13979.9553 7509.9498 7519.1997 4309.1424 3544.1159 5025.9688 13949.4815 285349.961 151502.3522 20397.8929 14319.9398 95308.1217 45996.8201 9733.6372 5021.4152 7523.0146 78926954 endoglucanase Carbon Cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 118650.3762 12097.8856 22019.9423 12812.0987 35231.4972 65668.7781 10883.8573 17811.3084 25981.561 27400.7486 564842.5369 25195.0658 32749.0197 22442.8044 20119.5754 20119.5754 38161.4592 48137.5551 20900.4197 38113.102 53983.4696 19995.6113 13273.7276 13362.2879 29859.0226 51948.2604 62417.0432 29994.0998 57186.1524 9135.761 17147.2531 14408.9583 9662.7384 22265.0399 323387032 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 27494.9583 5117.8039 6393.7439 10073.9293 8617.0938 3154.0995 6068.0011 4608.9122 4930.7514 23061.8569 103496.1985 4312.4581 11830.9396 2521.7969 2521.7969 3553.6553 11436.9836 7910.4936 5273.1579 9097.6067 7483.531 3558.1953 3452.7549 8511.7745 6355.9229 81064.3696 5978.6181 8443.2383 5955.3588 7766.2114 10368.1108 5565.0613 7155.7769 189209792 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 18563.04675 7963.4456 7941.7928 8077.3553 5976.89676667 11690.4552 9989.61975 4989.56185 87474.8834 6309.63983333 11561.1106 17226.9916 5352.1528 5352.1528 4438.444 15177.36343333 6551.4569 5196.68473333 14071.39096667 9633.64723333 3591.19656667 5297.3747 12075.9311 5547.93503333 28167.7875 8844.39966667 9374.56376667 3065.6101 6409.26543333 6709.26583333 7373.02736667 40714.36223333 407060499 nfsa_2 Organic Remediation Aromatics Nitoaromatics Exiguobacterium antarcticum B7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium antarcticum; 21642.6968 4385.1709 7301.7352 5793.9623 8436.2164 4054.4147 35180.6719 35180.6719 5530.6255 7646.7525 6100.438 5720.0448 2378.6069 8892.0139 2728.3066 13937.6869 4019.6429 4918.5637 1650.5873 3891.634 3199.946 3344.5209 4686.1134 340772028 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 36300.3695 20949.6256 23754.6603 12159.4546 8374.5781 11910.9736 13609.6831 136866.5901 16471.6153 85323.8822 30230.9345 309130.6059 32162.3164 22061.4033 52138.0877 26263.8351 26263.8351 71625.8658 67916.5056 21367.1146 25870.6698 21561.39 36226.8436 16794.6719 94025.406 25099.9966 34865.4429 62002.5223 27147.4672 40565.4571 16573.7629 27530.5183 29769.4225 54903.6526 35324.3571 196477557 alkk Organic Remediation Others NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 7559.7739 6260.1796 1974.6164 3663.0784 2661.7967 4434.289 4154.2752 2810.2669 110415.8296 3591.7886 4621.1825 7233.9248 7233.9248 5687.0672 6783.3356 9940.7119 4559.9415 7055.3284 7358.0177 5223.4073 3860.5201 14616.995 3877.9203 10138.6897 8475.3262 8827.5609 5248.4284 5193.3288 11108.8853 4895.9868 7232.7136 170935189 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 9361.5832 2285774.2537 7525.3244 3858.7842 4045.6328 2799.755 3187.2238 13831.825 7388.2222 144139.4387 5843.8398 8683.1179 33304.6564 19977.074 19977.074 10305.9995 16995.3646 4484.8287 10447.9717 12296.7055 9515.0066 10451.351 9225.3537 13305.5632 15016.2322 37645.7248 35786.9512 16287.8517 8295.7154 15472.0438 19984.1086 15510.8118 28101.7447 189210425 pec_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 29506.4154 17082.8869 21515.7012 21479.8283 27299.1907 12120.1217 35879.4632 22855.5458 13741.7062 32905.3392 65473.3425 11793.1744 690996.247 29468.4779 30923.4192 31324.8363 16617.9641 16617.9641 17916.7061 35344.4885 30569.2546 29962.165 31548.7696 47336.747 15520.3947 13140.2738 38388.6811 28389.8343 70072.5662 35607.4919 33244.2971 16830.5252 17038.9229 16814.5722 19296.7065 53017.9899 54778311 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11640.9296 12250.255 4574.6367 19892.3219 12731.8842 10502.404 10583.5537 13115.1646 42661.3697 338890.6579 12212.3768 7508.1721 13483.266 35487.288 35487.288 6411.7586 26720.2202 10424.4647 41195.9567 25810.2772 66123.5265 7726.1207 16907.993 33030.2044 11943.8498 23564.0537 27564.8344 16983.8578 4926.0532 11337.324 13788.8905 8290.7644 21537.3038 319978828 mer Metal Homeostasis Mercury Detoxification Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 12361.8239 7139.1918 5239.0506 7548.4731 7440.4577 8109.6538 23902.0866 11771.6252 10613.5896 4464.8929 227318.7968 9684.7361 9169.1949 8521.249 7034.0338 7034.0338 6702.2046 23236.4065 9199.5476 11292.3514 17266.1692 16995.1848 8238.5957 8157.0119 12178.5495 8812.4078 31210.615 11880.4701 14919.6697 14773.104 7672.8448 11390.3327 7141.9937 15579.9791 296270224 amyA Carbon Cycling Carbon degradation Starch Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 21054.1023 34350.5074 11445.6928 3229.8168 3418.7556 11920.9412 21943.0972 125935.1324 4661.8243 10762.6804 9109.0105 9109.0105 3319.4101 19156.621 5622.9624 11444.4603 5403.2595 6444.1495 5017.8294 13402.196 32814.7581 11488.2182 29017.6672 11890.222 2935.6412 6142.3453 5399.7083 4992.9714 27035.0022 283812665 xylg Organic Remediation Aromatics Aromatic carboxylic acid Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 110822.9162 78957.4906 11987.0809 9432.1036 12585.2724 20301.1576 11962.0952 17716.3781 36592.7532 26038.9059 700516.0849 17800.3184 18127.1615 33130.3072 34285.9712 34285.9712 9723.9941 32967.1205 12814.9054 16104.5508 21565.4213 29456.7997 17121.1939 11838.2939 46139.7725 22548.4851 35021.0678 40749.7564 40600.1317 9010.7067 12480.3696 18034.2701 10357.727 43586.1744 296850177 terc Metal Homeostasis Tellurium Detoxification Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 100323.9419 337260216 chitinase Carbon Cycling Carbon degradation Chitin Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 8748.0047 6532.7359 10629.3337 7921.9457 7206.1991 4253.346 12585.5535 11558.5185 4230.0182 204139.4616 10209.9355 8834.2097 5468.2345 7195.8162 7195.8162 8743.3615 15175.6673 11334.7226 13211.7035 14163.2361 9472.1675 6101.3556 4957.4674 14110.8896 4588.7272 22229.1314 12142.4763 17967.53 4515.2535 8172.3676 9177.461 4039.1775 14577.0014 307596192 aps_apra Sulfur adenylylsulfate reductase NA Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 26074.5678 16398.3328 18644.2324 190360.9888 11504.7082 9347.118 7840.9462 15229.2091 14457.0404 10635.7062 420631.7408 23139.958 20120.7239 11977.8183 6767.7828 6767.7828 11388.7287 82694.4088 25556.5997 13954.237 34123.4153 25835.1818 15157.6169 10210.0805 19520.7889 6667.1696 54888.2146 10925.4964 30971.078 12085.0755 13809.4091 25043.6537 7757.9163 31279.9749 77539313 mhqa Organic Remediation Aromatics Nitoaromatics Burkholderia sp. NF100 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 30065.7004 28717.2087 33396.6009 33982.9415 14349.0941 23887.347 19829.5199 16584.2473 18115.0128 23879.5582 33070.9464 498682.8294 23853.9621 22859.5495 20324.3877 26323.8202 26323.8202 17191.7583 29636.0545 24957.841 14483.9743 36520.5268 102418.208 17424.8428 14771.8672 35195.8385 41327.939 46013.7782 25497.9184 30452.6446 33536.5515 20339.2375 27423.0429 14148.692 30456.5389 182636182 arsc Metal Homeostasis Arsenic Detoxification Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 34935.1339 18589.7011 78068.7562 40230.9578 42483.416 11176.642 50368.8466 28433.5655 123013.0293 30484.4092 46959.9309 39247.9433 988129.0318 210843.0001 70661.5398 43441.5041 41878.149 41878.149 19270.6724 84859.7415 64062.6252 34921.2135 101015.4071 37043.1997 21474.4342 43472.5924 51288.8186 13374.5737 59361.1569 82442.217 79189.7295 21825.4174 35990.7511 172686.941 22934.5923 36651.9219 322412966 ppx Phosphorus Polyphosphate degradation NA Phascolarctobacterium succinatutens YIT 12067 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Phascolarctobacterium;species:Phascolarctobacterium succinatutens; 4558.1029 4438.7146 3777.2303 8951.9853 2209.8121 3916.2235 4906.6166 3560.4306 65949.873 4319.4243 6662.724 4508.8075 4508.8075 9893.2014 3336.0416 5876.1929 4654.5359 5669.0113 5666.5771 2495.6972 5716.0894 2610.7014 7415.8628 3981.5282 4199.341 3079.794 3003.1493 6557.9274 119495292 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9345.3999 3870.6147 5654.3485 2685.0171 4508.7841 6865.404 3022.0226 119709.6797 5838.1301 5824.935 13536.5213 2741.88745 2741.88745 8114.7605 10802.0684 6948.7433 8193.2286 5182.5653 10712.8556 6277.4402 3638.4776 6733.043 55580.268 10776.2769 3736.3686 8669.2641 3188.2991 3199.0305 8943.9695 5128.7605 8058.5881 288911209 aln Organic Remediation Others NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 14724.7173 59556.094 6240.4904 60599.1662 5726.5945 5858.9937 3224.3818 6271.7322 14393.823 4707.3279 203605.1566 8450.8598 12817.2037 9242.2781 5523.1098 5523.1098 6527.0208 10425.881 9700.5342 13499.918 21244.3394 12638.5727 5619.3498 6088.4468 11158.2541 4804.4982 18430.3438 15006.4945 14938.6873 6322.5378 5923.706 12212.6814 5724.9615 8393.0871 66474941 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 103923.1468 13222.1207 28341.0217 38772.7166 14196.8422 23397.4747 17749.5111 12183.7931 18852.7504 26860.9707 13087.5675 592031.737 26587.4201 48585.5505 21172.0543 14282.4205 14282.4205 20135.3234 44230.3389 25453.8573 32523.0013 38842.2892 42093.14 15538.3882 14410.0263 31524.8688 17105.458 84023.5409 29641.0395 32781.092 11628.3003 18070.5281 20126.5669 16492.0294 40977.1233 146275748 xylanase Carbon Cycling Carbon degradation Hemicellulose Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 8366.4661 4837.1954 3852.7752 3843.473 4250.5075 6529.5031 4375.1559 124143.0419 8689.3124 5912.8999 3469.5072 3469.5072 5209.8644 11391.3316 5365.0468 6387.29 8877.15 4991.0438 3230.7469 4144.5122 8894.6635 3817.0633 17985.8159 6152.5796 9993.9979 4103.9975 9976.3675 5817.8809 5926.9828 11245.2601 99030581 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 17993.069 30344.6708 11439.2961 3145.8342 12225.2731 68025.5046 6853.9563 87742.9931 15161.525 165545.2154 18335.6661 12955.9619 34754.2304 22299.5388 22299.5388 13732.4138 18429.0007 8299.5638 14529.9505 10684.3375 7207.87 4128.1035 9513.1454 16798.871 5563.3193 21973.1356 12450.947 18658.3155 7785.8352 8983.5794 9125.2293 6133.6208 9075.4415 353182148 cda Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4365.024 5861.9459 8689.8185 4226.7362 2609.6764 3504.4825 2324.8239 2376.7606 2376.7606 3722.8907 4804.6755 3853.7651 2571.5653 2556.2002 2126.31 6500.4017 2597.3729 3602.994 5846.9035 189500785 dsra Sulfur sulfite reduction NA Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 5496.1572 6111.8289 14493.7495 3134.203 8188.5025 4489.8676 5397.0056 5700.9311 6328.8181 2930.3 3308.7752 7275.2266 3447.9506 12517.4541 5544.3859 3456.4189 3658.3579 20136.2954 3949.6467 5294.4529 219677025 linb Organic Remediation Pesticides related compound NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13456.7884 9696.8069 16007.9855 17794.4125 7592.789 10916.636 6887.058 3895.5202 16315.9425 13552.8828 5957.144 439301.0049 15142.7006 16224.4905 11446.7256 7605.2821 7605.2821 14109.2681 30830.0612 16597.1075 11707.09 23915.1945 47894.4413 8042.2728 11682.1334 26015.0674 9223.8979 40181.8339 17584.7984 30739.9491 9425.3323 17995.0978 12116.7432 10123.7355 22282.383 297162605 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 16742.5009 4486.637 4459.966 24117.8967 20816.9104 7853.0199 23167.7136 8200.5972 81993.0382 99735.6934 7522.8083 2745.7405 2745.7405 3837.5864 10013.4928 14129.5798 77405.7934 5911.9059 7463.6285 5854.8101 10232.3851 8065.5247 17134.2154 9999.5385 25982.0183 6256.9329 6080.1381 10002.4655 4044.6027 187053.4597 325980904 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 7262.3043 6346.3171 3751.2788 3333.7286 2081.2949 4911.4609 6684.4798 6302.5514 112674.0258 4495.468 2116.2707 2116.2707 9444.873 4743.9771 14891.6039 5116.2321 6192.9845 2477.4087 3864.2136 7488.6445 2747.6502 11713.2459 3671.9815 10768.4773 2143.4376 8170.6405 4312.4593 2428.2832 9019.445 304328243 xylanase Carbon Cycling Carbon degradation Hemicellulose Pediococcus acidilactici DSM 20284 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 14044.5452 4688.174 27771.8997 10537.3029 2041.1684 11661.2408 2477.4544 10393.2406 7467.2549 5635.2086 139037.0756 8898.8348 7831.7328 7743.2849 8262.0262 8262.0262 4950.8836 15111.5774 7142.3359 3439.2516 123602.6534 6018.4221 6403.0524 7895.8724 12534.2454 10129.4795 21429.2941 8274.7255 16873.055 11567.4854 9783.049 25334.0958 5640.9814 10723.478 5732185 alginase Carbon Cycling Carbon degradation Alginate Corynebacterium sp. ALY-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 11339.5369 13713.8048 11818.4331 22807.5384 38507.6194 8454.6982 8813.4891 14157.2036 8330.1643 27768.3154 8731.8195 532696.077 12213.8252 13521.1134 13229.2872 15706.1057 15706.1057 6650.4348 21219.4011 13967.1845 12664.1322 21341.367 14303.929 5368.5398 19397.4964 35740.7822 26970.7211 23208.9911 17721.6178 19335.0913 6365.6669 9558.87 11711.8028 7038.0142 21588.6954 32472610 alginase Carbon Cycling Carbon degradation Alginate Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 3964.6231 8805.1762 8310.7566 2204.5108 3868.8131 2092.514 4893.3753 3001.7933 89609.9629 5657.994 3835.1019 3835.1019 9766.258 2774.3158 8214.3924 4821.0741 6320.3621 6026.0815 4802.8241 3080.4003 5133.9991 2367.0513 109290304 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4578.4412 5210.6295 2502.5293 59060.2835 3658.1799 43489.8684 43489.8684 6692.636 4441.2344 7137.6147 7092.5988 2621.9542 5152.2097 8123.0374 2025.6437 4842.1502 3457.3204 9204.7827 379058323 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 8386.2627 18980.5284 9091.9975 4541.0206 3694.9204 5411.4056 7344.1226 2481.7232 2481.7232 13832.224 5662.2992 11348.4966 4032.9622 20736.2518 3922.9166 3273.1989 23685.4858 18700.9781 2514.4207 226934606 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 19782.6373 20364.2317 5571.4148 8916.3942 15989.7135 4198.7486 7580.9319 8723.6484 20906.8524 127531.5105 23083.1582 353490.9188 14953.354 14138.7454 11116.0784 14763.0495 14763.0495 7407.3658 408189.8655 11472.824 13718.9139 18700.8871 8423.8773 7121.0237 136595.9028 17181.6886 34224.2247 125500.1019 29006.152 128020.0532 6480.8301 30465.7303 29953.1036 5103.2168 13887.5177 152985914 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9938.6213 5605.1103 3444.4498 22575.6799 3645.1922 9942.4092 3415.5615 2679613.7731 4402.4798 15142.5848 15142.5848 12881.4875 23100.1443 61519.5071 7977.0129 24468.7939 4101.8395 5813.7875 9139.9571 12078.1316 10512.5658 10863.8738 3449.3762 7649.1206 7301.6856 8244.3822 17281.3489 116067966 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9848.9094 12003.1018 5831.0512 2336.0948 7678.2816 5132.7516 44654.4849 13802.8848 3822.3082 4556.1419 3333.6194 3333.6194 5096.309 12739.0622 8661.1942 19521.6114 7432.9613 3961.7014 3177.8019 4974.3795 7301.5704 2984.1619 15814.0094 10841.9489 18048.8399 4057.4609 3266.3369 5640.2158 3338.5547 4840.9409 153962734 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 7643.989 13864.9902 6116.6953 4758.523 14003.5853 11969.6669 12497.5332 7411.0365 13871.0116 96278.8675 12637.8152 46915.0126 18382.3545 4269.738 4269.738 5243.2153 13870.144 14932.1591 8193.8068 11562.8469 15464.5851 4633.1015 7196.4779 8076.1044 23277.9117 28868.2046 8686.1268 15741.6754 4638.5627 9154.2077 7539.8131 7623.4997 10206.0369 134098251 amyA Carbon Cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 28603.5863 10446.1777 23395.449 36241.68 17754.0425 4888.0505 26138.6201 21472.0588 14197.2833 24972.9335 23571.1774 35493.9482 341772.4432 47932.1157 19794.1328 20228.7628 17284.3065 17284.3065 14361.6983 51933.0514 21914.7393 51734.4103 26483.3836 41168.1695 19793.8317 63790.937 52375.9953 105803.027 72693.0407 93538.2418 42665.4079 15076.283 20858.8965 18396.8521 14860.1843 366655.4058 88800970 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 6610.0261 7120.157 4097.4331 14389.1676 4770.2951 5935.6719 31865.3462 13479.0361 80395.8245 6524.8958 9930.6211 6616.2803 9235.7733 9235.7733 5731.8259 19202.0819 8389.6247 4599.8614 48932.5243 12658.1375 5301.8981 7058.293 12582.4793 4009.7024 22746.4696 17574.6006 46059.2821 9276.8938 5076.3492 14322.1517 11403.3584 187477061 xylg Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 19675.8417 13719.0558 20583.9423 23517.8531 8727.322 14705.6266 35140.6024 9580.1409 24313.232 15750.519 16443.4675 425113.9462 26946.9146 24735.4678 27618.5929 16096.4068 16096.4068 12629.933 42231.6421 21182.5878 44559.7046 26605.028 23504.5011 11217.6177 10019.2112 28678.2865 12945.0141 37440.1786 25499.1731 25455.7868 8199.7035 15666.0239 17022.9309 9998.0864 32881.0684 171678191 amyA Carbon Cycling Carbon degradation Starch Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 3704.9905 4623.1422 7833.8338 3251.1697 14565.2327 10785.3203 4271.0605 3619.4493 3619.4493 3392.5112 7163.5836 5940.8258 8656.4653 2370.4726 4492.205 6496.0978 3040.572 9107.0681 46917294 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9485.9127 7592.6878 11680.655 15733.4894 3321.9488 5510.7624 2867.2121 8608.6457 4170.5428 79158.5985 10120.0323 4901.5985 48230.8765 6801.1693 6801.1693 9953.491 14045.9673 3977.7935 10687.455 45132.1288 9172.3613 4836.9699 7195.691 8152.5247 4745.9114 20991.4525 6268.3768 12833.2978 3428.8442 10077.9402 16308.3611 3984.45 10139.391 336105112 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 6574.1593 3965.5626 6660.7331 3291.5011 9881.3756 13379.5503 27773.2987 5321.1504 5321.1504 9048.4559 10600.5491 4887.4496 3289.6306 4357.8293 1755.0324 3255.9834 7437.7846 5523.372 384147772 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 40784.9537 7095.3303 12539.1786 7849.4968 5772.5546 42136.9291 34947.0411 4419.1939 11684.0754 13663.6682 20287.7661 384430.3179 16252.8707 20633.01 70869.8277 36188.9752 36188.9752 10763.5512 47696.7122 6058.3628 7804.7353 19439.9387 22231.5756 17358.0285 13455.5667 12573.1122 18026.3614 28153.8453 15594.7441 44049.4876 9057.1377 16043.7835 22406.0556 28617.9536 27031.5078 89512460 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 317096.9194 75716.4658 98691.4819 438040.8283 244592.0418 69758.8395 245985.1305 184996.1064 489604.3362 249361.3649 275275.0908 164605.2932 4576223.0912 249005.4261 288028.5382 599928.9232 226429.3871 226429.3871 120521.2109 198355.4324 259343.8579 171902.0059 352753.518 255235.1851 458162.9282 259160.7012 367946.7573 125150.7687 451655.8675 517958.2631 214320.5287 115093.6854 182009.7228 115663.7746 202170.0536 236056.982 117613120 arsc Metal Homeostasis Arsenic Detoxification Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 25613.0668 25670.6159 14826.4587 25308.5271 20079.1051 8241.0015 18533.5051 32715.5382 65556.3607 20682.2281 34371.5822 48978.1654 659472.1279 29863.4199 35770.9402 83341.8841 61473.2623 61473.2623 23217.4698 39484.1699 30399.8255 44058.2832 72415.1627 43791.0288 21393.1081 23562.1531 27299.4225 19899.3266 53255.9921 38597.5898 44948.9984 16377.986 28543.6758 37850.1383 33771.4933 55979.4711 225159985 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8728.9311 2041.7365 4187.6426 4466.0174 4922.821 3351.7715 80034.5341 3600.5632 5075.5184 3002.9759 3002.9759 3586.3801 7742.6063 5563.5201 4934.6766 2606.7716 12936.74 6586.0418 9706.4801 2711.8758 5064.7499 3454.826 6229.3431 208010445 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 39585.1079 309261781 narg Nitrogen Denitrification NA Diaphorobacter sp. R-26815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Diaphorobacter; 18042.9064 9873.3936 5358.6797 19779.878 11791.0867 9441.2636 17837.9397 12198.6164 27286.6686 10953.778 13326.0506 180300.519 16712.2034 17575.6821 24805.0835 15068.8842 15068.8842 40626.4652 29969.4482 16979.4265 33121.9705 57833.0509 7762.4545 7229.8827 10701.8422 27318.308 9821.7547 33244.4028 35757.6305 19506.3073 8869.7003 16972.6789 16710.532 13148.0996 15913.5732 349796102 catechol_b Organic Remediation Aromatics Other aromatics Neisseria wadsworthii 9715 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 8398.242 12993.5211 9484.5838 6948.2649 3932.0483 23213.5182 18375.377 623213.7289 20141.6051 6960.8021 124841.8089 19860.3159 7295.6465 4573.2558 4879.9942 4879.9942 6132.0836 17706.3681 11015.4302 12676.0716 11570.7962 13900.6746 4915.1889 4904.3166 10774.4119 4737.2867 24220.8264 6279.851 10894.1578 5093.715 6299.9477 8000.4192 5925.7649 13640.0342 317464253 linb Organic Remediation Pesticides related compound NA Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 6318.421 10359.2485 2306.7256 3718.8083 4807.0219 10327.2871 2919.7615 95052.0691 9235.5789 7008.5186 4128.3095 2262.3131 2262.3131 4418.6343 12270.0504 6493.2641 6929.1561 6789.1753 7637.0981 3172.0766 3215.8659 7875.3941 7521.2124 11432.9596 6251.4418 9288.2948 3713.0193 6242.5909 5449.0178 3732.0002 8946.0299 159124816 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus A1163 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 89694.6212 30919.9903 330603.4755 98257.8266 48097.9831 38620.6968 122821.633 89738.6024 347046.4908 172492.0296 132670.1246 88147.5543 17503981.8824 133841.2146 299913.1255 136086.3786 112916.3339 112916.3339 57533.2639 129451.3003 115910.1226 196127.6505 138490.5662 116525.881 63001.1562 409533.5038 146487.6187 58187.9365 278854.2354 296256.5037 117286.3957 71632.6728 81124.5166 107222.0677 69727.1 112577.7137 109624837 nira Nitrogen Assimilatory N reduction NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 7387.1975 2611.2057 146192094 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6701.6427 4624.2116 2553.6001 4152.0709 6841.6695 4899.1343 66395.5505 5061.4833 4445.7593 3447.4973 3447.4973 471590.5032 11343.6206 4230.4235 20863.5091 6584.4882 9801.7565 3685.307 8163.2663 2978.7691 13895.1969 6366.7243 8075.4573 3569.7411 7357.9949 423218.6522 3423.8177 307131281 narg Nitrogen Denitrification NA Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5294.3027 8443.7901 80897.2629 77998.5045 4855.049 13696.4963 3080.1109 17020.9851 5081.6577 1341220.5428 2973.2045 3245.5578 6146.8113 9781.3539 5167.9178 8028.5884 8758.7028 4971.9831 397323251 phn Organic Remediation Herbicides related compound NA Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 5606.6822 17517.9349 8245.5758 7116.0101 8392.0338 11215.1675 6178.4468 8889.5942 30689.0653 111095.6982 28344.9367 7277.5421 33566.6173 9927.0512 9927.0512 4889.2085 9130.8419 10254.4651 10494.6042 10963.3968 10206.1247 16807.096 5443.2869 15323.2109 32013.787 29427.4846 11939.1351 9011.4257 9157.9425 6799.2765 7953.9106 6140.5659 5938.0066 7578780 merb Metal Homeostasis Mercury Detoxification Streptomyces sp. CHR28 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9259.8838 5613.6632 27461.2639 2609.3286 5038.6474 5000.2699 4171.6435 49300.9295 6117.2262 110908.2023 7896.7485 9263.3079 9905.2177 16498.7679 16498.7679 3516.6738 11168.3237 6474.113 9511.0551 4744.0553 3036.5747 2327.7667 8658.2702 5116.6583 10840.8846 9409.6983 11489.8635 3203.9126 11513.9246 5013.9564 6408.2488 9696.0192 84778345 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6072.7458 2838.9461 3194.2428 2693.1193 5987.3417 7581.4121 5130.2905 71807.7101 7749.329 4213.1556 4241.6948 4241.6948 2693.5696 8675.81 6299.183 5157.8548 3728.7546 4811.3458 5928.2193 9585.0206 6724.5942 4853.1386 3775.1123 5187.1921 5822.0869 315415422 rgl Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 11862.1863 12418.1608 17672.9843 20711.0276 39825.9122 8368.2657 7195.5678 5055.6079 11202.066 18571.782 6875.0428 320082.2379 14574.8994 14889.5396 7890.0636 11134.3118 11134.3118 29597.0183 25721.134 18358.0726 16737.4857 16332.0446 11102.6026 5350.9338 15913.7257 28497.4259 7549.2608 23088.2427 15991.4982 18623.0224 11839.0826 8785.4294 56358.0004 6221.5499 12731.079 308228491 ara Carbon Cycling Carbon degradation Hemicellulose Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 27081.8089 16121.4421 13022.1901 34231.6325 26689.2381 13299.5472 226114.2921 23221.6697 18317.8 24707.2789 27789.1581 18837.7653 682028.8361 37850.7339 35651.4911 44888.375 20627.7776 20627.7776 21706.5133 40005.8658 24554.8916 33012.7006 40964.3151 35007.8174 12066.7335 18397.3949 38881.7484 15146.7471 62724.1538 34025.0914 23784.7549 13362.8388 21407.3017 20747.8534 12474.4547 27068.0133 260435422 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 8109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 133764.5666 96209.3155 245939.4682 27247.4524 21071.7939 26860.9684 105063.2229 119594.9826 159058.3837 94375.9655 99427.1047 3389427.15 160851.8786 197191.7081 521871.5467 137134.6786 137134.6786 52269.1731 136917.624 48320.6167 127943.2896 104950.5058 86729.3573 107591.905 62013.3073 88972.1895 88566.6842 333923.7749 139874.0937 95677.4745 33009.8017 86558.7931 86069.2531 77998.9751 217537.7109 313107588 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas aeruginosa 39016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 34001.3789 21713.7765 8653.6259 21374.4634 6762.4091 9629.7872 18645.0574 9522.1453 88204.7146 25687.4955 29575.0107 379584.3245 22202.7696 18382.0314 19388.6624 70784.1106 70784.1106 91982.4847 71806.022 22535.8396 24781.9369 38677.1992 28037.1685 129981.0417 13512.4144 76388.0801 14775.8545 1273209.6915 28650.7281 33751.3312 10784.6276 33088.6322 82143.4349 68428.6996 48428.0261 167541398 mcra Carbon Cycling Methane Methanogenesis uncultured bacterium superkingdom:Bacteria; 9113.8389 94983269 silicon_transporter Metal Homeostasis Silicon Transport NA 14664.0788 5559.2167 10275.5921 8514.0144 6893.6263 10874.2559 2272.664 6894.3953 8884.0518 8110.0609 328594.7694 12575.9025 11124.6132 7079.9165 12390.8677 12390.8677 9007.9166 12338.075 15601.9782 6757.722 8028.3056 39754.9605 3265.4227 10054.6279 13817.071 3909.7564 19110.2078 6796.6338 13842.4137 6254.2496 6821.7608 17907.5064 17130.0299 8358.3024 33391459 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7963.7504 12203.8581 2562.1046 9760.0985 4889.5287 3170.9894 8994.7411 156326.6561 6128.9324 5164.2083 11395.8322 2676.2703 2676.2703 4452.5806 7268.0554 5091.6971 5890.5291 7865.5211 4531.9077 3994.9916 2837.031 7220.5381 10143.5012 16954.928 7972.3393 9094.3322 4059.9635 4707.7412 5805.4161 3701.2132 8858.9486 169637180 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 7986.2859 5450.6541 8767.12 8530.9877 4924.5388 3487.8204 3306.4377 8668.4048 6101.8872 3556.317 153949.9247 7014.8429 8221.8034 5611.5552 4370.9474 4370.9474 6558.0889 11404.6356 9899.6779 10566.6217 9167.023 13118.1165 3586.2233 3871.8907 10952.678 3842.7795 21631.9748 8615.3891 13616.3418 4863.8875 5483.6244 5134.4698 57317.3901 24448.5915 35396182 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. Cs1-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 34506.9066 48672.7979 47328.802 20439.5667 15516.0075 32625.3284 43102.8618 21616.2104 32352.6164 38592.7711 46688.4037 770041.1028 111282.1735 165876.3175 81404.8958 42559.1984 42559.1984 65520.2119 51701.0268 258855.151 45623.091 93420.7675 67684.497 118614.6995 44036.951 51287.7248 55901.7736 88281.8929 735342.8037 84340.9916 43505.7229 34585.5859 52843.0965 59477.0724 170927.7871 333445044 ppx Phosphorus Polyphosphate degradation NA Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 57696.8853 5813.6961 3619.3255 3820.249 10516.1169 4802.081 142784.0817 51023.0024 4529.5365 4694.1986 4694.1986 8499.4882 16599.5258 8650.0919 5091.4619 4393.7839 14654.3894 4036.858 6815.5311 4535.976 5872.4715 311694006 bphF1 Organic Remediation Aromatics Polycyclic aromatics Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 11912.0725 6238.9584 19657.8447 14398.0371 5830.7647 7573.5385 3977.4065 9416.2029 15496.343 5950.9537 185273.1447 12785.3619 9759.1062 11339.0002 4923.5586 4923.5586 6628.6043 13327.5533 12454.094 12100.8762 11742.1105 15015.6119 5069.2805 5419.0076 16081.2078 5135.4176 22536.2528 6827.7534 15337.1151 5888.5602 7280.4936 8010.1875 5452.3856 76478.4838 148474840 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 25166.3575 11002.7899 10062.2667 27439.1845 9380.8504 4999.2198 14017.4807 9604.6192 9887.5405 14689.8133 19776.2129 9479.0378 434780.5383 15016.9277 24135.0696 15735.1797 7859.995 7859.995 14601.9158 22319.0731 19766.7275 18282.4702 23419.8188 24207.8344 9451.2766 7114.6582 24603.6466 6922.3882 38992.4233 19292.932 20199.0136 7551.676 11569.1658 15419.4724 9964.187 22201.8261 223886697 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus tuberaster superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 26043.0313 11095.7062 24908.1623 24048.7472 15316.6139 23965.1925 17568.9991 10726.0957 16933.7665 30050.841 11443.6835 362595.2272 20490.2379 52310.7737 31241.014 15525.7213 15525.7213 11921.5841 34891.8581 20948.3577 14564.3605 37294.8676 23182.2872 14662.9141 20581.4474 25146.3644 15923.3001 51077.3565 30530.4946 29010.4955 17295.6915 20166.877 15582.3686 15143.6295 51878.6771 389775390 ppx Phosphorus Polyphosphate degradation NA Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 42303.7719 42166.8384 22398.021 190997.7411 17945.1639 125442.1769 51303.0671 34322.6973 57250.5336 22057.3996 31044.6981 406634.1081 50575.3352 15519.259 24560.5826 42538.3411 42538.3411 8973.4007 48510.5301 16826.1378 10991.1037 45187.9115 18011.3787 12219.7876 16068.244 33321.4364 39845.341 387188.2767 59016.5981 33809.8265 19513.3236 19130.3346 20071.8542 16868.6156 31772.9702 296270821 amyA Carbon Cycling Carbon degradation Starch Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 74961.0927 31524.1758 109906.271 61774.9984 20185.3841 17767.5465 27855.94 41304.1063 43938.3422 36875.1397 51481.988 733411.871 554765.7853 328970.3411 52690.8405 66392.3945 66392.3945 55329.6282 104039.5616 35924.6313 70471.2796 49139.6282 85871.3813 21545.9204 30795.5649 48403.6993 31431.1686 112158.0902 57105.7011 57155.3211 19537.9564 49676.5082 44089.9291 26472.8168 37059.526 162568499 aoxb Metal Homeostasis Arsenic Detoxification Alcaligenes sp. T12RB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 37859.5758 12218.7572 135151.3866 8725.5174 7929.1322 26739.2275 11354.0522 32309.4046 19365.0731 20627.8204 17685.9363 364482.6648 24825.9534 41325.5939 35613.1785 40214.5143 40214.5143 244504.7234 47676.5455 40511.0054 15805.8497 35753.5677 32023.116 16530.1404 28786.8393 22731.45 19209.6071 57886.4254 64687.1214 35330.2591 13046.672 26416.1837 45769.6081 13111.3769 26738.8064 111073739 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10011.9945 9292.0826 20993.9078 13315.8254 5755.1213 1994.8388 6036.9207 7525.5906 3826.9286 153484.2193 8417.4408 8915.7983 22904.7127 11324.1572 11324.1572 4097.8658 13437.6451 11558.4693 20489.2868 5537.7038 7036.2188 2585.4308 5804.3928 15042.8729 4977.6358 19123.2179 9652.9583 12772.5223 5363.3719 5203.4229 5028.5416 3802.3474 7397.3986 384070900 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 61796.8141 11907.0149 10722.1899 18386.3935 50405.5092 6568.9068 40660.2734 20436.514 114322.4743 27813.7167 94824.049 13494.674 541964.0348 22345.8819 24253.0098 23184.5096 30627.0289 30627.0289 15549.6395 29494.8102 34755.8218 29815.8637 43541.0653 36399.0577 12737.3929 29485.8098 29820.4513 9528.1764 47374.2853 37918.8665 56521.5617 19339.866 19816.178 29746.2138 13892.6567 42320.006 110645039 arsc Metal Homeostasis Arsenic Detoxification Acidithiobacillus caldus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 16603.3123 4283.4878 2195.3794 15750.753 16250.2496 12395.3328 1914.3025 1914.3025 2733.1451 3043.2239 6582.2546 16584.5099 3721.5952 4586.0753 5283.1526 156744087 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 22804.7514 2417508.9395 666855.3497 13461.5344 26541.9092 12744.502 16202.6085 15843.6244 19554.6956 23582.8526 29766.0084 13981.9769 438231.9163 20886.6702 24113.238 15684.0038 19133.0177 19133.0177 17236.4849 37054.6745 25617.1318 23302.7166 229225.1785 37804.7418 15144.3676 20161.1394 26759.9103 21520.6374 50411.7093 24193.8835 33445.7015 12544.4452 19144.7925 27837.4757 17066.8205 154622.1558 150014820 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3870.6366 2062.7535 9195.8087 3710.302 12334.1879 11083.7343 12270.6269 5101.2101 5101.2101 6870.1144 62452.336 8066.8835 9975.2182 4206.2255 3963.1836 6982.6303 8043.1447 7728.196 1876.3338 3250.9145 3068.5588 63081994 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 127279.6323 34515.5675 221929.1076 54372.2199 766264.9455 85874.8983 56383.7768 50652.2966 93398.2999 61517.3355 90857.0608 43482.9217 1452545.8274 94921.6107 75282.3762 102297.4081 55011.8562 55011.8562 41717.6189 79736.6872 63573.6792 121953.3367 330181.3323 220770.0762 51676.7968 63793.8654 100565.1515 49442.939 127643.3239 97263.0345 73090.5868 48500.9359 44440.843 86474.126 39930.5785 107764.8728 9843807 nirs Nitrogen Denitrification NA Paracoccus pantotrophus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 20811.8095 34729.879 16046.7796 20953.3607 25424.1123 7851.9556 13005.4003 14920.5392 16135.0017 20519.9697 17635.2064 9930.7241 339426.2835 33633.0319 30082.2476 43306.703 16038.9264 16038.9264 12609.3127 31649.8529 20364.7047 29461.3643 19516.1034 25406.9645 13587.1108 20339.2236 25502.3474 18287.1274 34018.1526 49535.3191 30081.956 11808.3622 17308.3992 21607.1381 14347.3338 26673.5981 385835853 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus ATCC 8530 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 9441.32 3661.8126 2720.6004 2286.8465 4456.7334 4973.1599 3791.7626 5799.6025 68935.226 5805.8148 6708.3009 4890.3944 13713.755 13713.755 3027.9713 12952.1253 121036.5797 9369.685 7420.0257 5023.2366 3343.3374 17171.3562 7318.7223 3530.3055 11709.1225 9408.4767 31809.6993 2973.5957 22207.2614 7591.9811 6168.9981 6242.0036 379044668 endoglucanase Carbon Cycling Carbon degradation Cellulose Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 10673.8855 6599.9279 91172.4356 2418.9342 7970.3243 5406.2528 4829.0222 77313.9186 4191.6108 3258.136 3258.136 15329.5942 4008.1264 4803.8492 6318.8487 3316.1302 5584.2909 22986.3397 5015.8117 8677.4041 3191.7394 5133.2503 30747.6802 145017599 tfth Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 36702.5793 11290.7093 46745.1768 8319.7803 24754.7166 81449.324 23811.8232 45852.4683 13541.1523 30633.2301 35469.4764 28366.0553 576539.0302 18745.5068 37621.7202 88885.9896 44792.4443 44792.4443 14709.5987 42760.3145 19731.3867 32322.3711 37932.7093 22344.7452 23299.0981 30752.3753 55836.9005 18387.1973 115548.9369 30271.1097 68516.2695 19274.0101 20329.6445 30212.5764 19494.4991 39740.8854 99080402 hbh Organic Remediation Aromatics BTEX and related aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 39657.5516 226310.3812 76259.3475 78768.2411 24298.327 78950.7316 53241.9378 27837.5731 40380.1104 48964.8031 29880.9102 560137.613 118084.4415 33087.8861 39132.1169 34964.5707 34964.5707 27222.2197 40430.4696 27176.6719 46380.9387 43232.9581 37711.1944 82717.7125 28392.9389 138334.8362 28043.7104 83140.3206 26482.5954 32093.2508 15292.0561 32000.1598 36916.7069 19501.8472 64724.5238 374325488 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4744.3441 3996.4577 3459.7446 3109.4494 96256.1222 3759.0679 4692.3344 3381.1211 3381.1211 6531.3086 4028.9352 3676.6686 10843.6102 2180.2444 3565.4797 6307.7557 36608.381 25116.1334 5204.0891 7297.9329 2908.9769 4493.1077 4711.5723 121562.3897 6374.7951 188028237 tehb Metal Homeostasis Tellurium Detoxification Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 20930.9194 431405.3253 22575.1019 64327.2888 10505.2458 18272.4245 566345.7872 5514.6005 14534.4659 12734.4137 36543.378 488697.9855 16066.6002 24222.2265 18008.4338 8952.0996 8952.0996 12799.2839 25541.2322 26266.551 13562.7958 49600.3977 49047.3408 46706.4908 9297.4653 37496.3929 9497.5046 30584.7145 17529.1457 22444.9651 11718.9556 16697.4123 18817.1731 10024.0104 19570.3157 374424072 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12787.298 4943.9092 15656.4401 5138.608 4903.4271 4771.53 20652.2779 113386.9866 19169.3887 5961.9977 154057.3454 11806.4202 16816.9859 15164.2305 6066.0881 6066.0881 6026.9209 14309.1122 8739.8377 31670.1615 6493.1176 8974.9651 5174.0228 4426.2911 11206.3473 4751.5348 26104.3274 9292.9997 11112.6709 5875.1297 8899.5161 7147.7237 4139.8862 4767.1857 190699411 ara Carbon Cycling Carbon degradation Hemicellulose Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7853.0749 22992.3596 5816.0311 4523.8982 4033.803 4564.9162 29469.2295 10243.869 148259.8526 5004.9821 15655.2526 5258.7827 6452.038 6452.038 11069.3901 8644.7102 8866.086 10796.2489 10010.5359 11230.3861 4962.8832 4533.1226 9084.4285 7683.1689 11639.5336 9882.1485 12315.0268 5679.1287 7332.3085 15700.7992 5780.1475 8786.9793 145603717 glx Carbon Cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9691.9055 13258.6963 7953.548 23211.2188 8333.3312 24367.5762 8864.9471 10661.6551 33096.2807 8165.2463 317521.6615 9803.9701 22170.8215 11969.402 6970.5709 6970.5709 6921.2192 18848.2459 11449.6325 11828.7197 17026.1646 20752.7825 9908.504 8654.8999 15136.5294 7442.6504 78978.6682 15109.5227 15760.8981 4870.1651 6532.424 9205.5781 11492.2916 25244.7471 108808388 urec Nitrogen Ammonification NA Yersinia pestis Antiqua superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 13204.8947 5832.4883 10231.1571 23087.9037 21432.5233 6025.862 9132.7089 36114.9198 9861.2122 6846.3717 5214.6971 147818.0835 7561.0445 10548.149 14192.6611 13706.5736 13706.5736 4361.5639 14062.4781 9154.6076 5937.038 6927.4552 21303.5533 2595.6058 4617.578 18156.8182 4970.333 19009.6095 11660.6486 12337.2727 5627.5475 8053.2298 7787.0623 5128.9402 9667.2198 352962452 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 13983.6512 4370.9729 6259.1333 2851.855 7919.5272 3926.1106 3926.1106 7013.6562 11696.3326 3007.9514 5461.8331 11449.5513 4259.4062 9128.3706 13403.3387 3871.5404 11262.1259 4660.3862 6910.0725 53803583 sqr Sulfur Sulfide Oxidation NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 13757.0236 10084.7838 8462.1643 6237.3622 2944.7004 3468.1457 2400.7686 4507.3918 13437.1165 3400.4769 176956.7991 6636.7182 9215.7314 11585.1391 8732.8634 8732.8634 5965.5559 11993.3758 4477.396 6436.3748 12074.2644 12272.7794 4224.8826 4335.3402 8850.053 3887.4518 11824.8246 4316.016 8485.286 2694.2363 3871.2259 13838.9688 2650.655 12993.9718 167842064 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 21217.3808 5656.1469 8918.7972 29763.4576 19999.8016 10636.3902 3188.393 6384.4517 13136.6848 11705.7641 146010.0027 21062.2453 14640.7434 13498.6074 23648.035 23648.035 11699.0914 19141.4565 12231.055 8400.3059 11513.2382 16686.2468 6920.1633 15707.8579 16140.6468 18654.7476 225148.0436 46813.0328 13074.8692 20665.5905 11849.3449 8313.1446 11889.2176 9794.2282 90655547 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 4N23 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 11344.5787 54013.8368 4775.875 4023.2198 2567.1682 2606.0195 4335.316 9721.7874 7964.9389 95725.1988 45244.6593 11486.4952 4771.823 4771.823 5502.076 9242.2879 7181.4585 9078.5216 13304.4511 12035.7702 4184.9526 3447.0461 9144.4974 3508.2918 16420.716 3611.0704 16342.7742 4655.4882 5748.5341 7186.3265 4250.8455 11932.0381 385739471 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 39822.208 5746.2235 4837.1949 2073.8072 5399.257 4906.8277 63995.6855 85989.2775 6108.2976 7461.4609 3988.9328 3988.9328 30270.6983 724953.9476 9148.4725 6448.3439 6982.2504 4729.7288 4768.3342 7900.3794 7735.1216 12797.1762 10547.0911 19025.6315 13373.0215 2764.6579 10592.1072 9196.9634 3857.763 10246.2085 148501120 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 40198.6259 32513.0535 16900.1662 63667.6653 15872.1615 291160.788 40666.9673 41211.4532 31636.359 42786.8542 21731.585 2120971.8967 34273.5262 56225.9086 121567.297 44423.0121 44423.0121 24841.8022 98584.0996 41385.3935 54621.8061 107049.2528 35616.1417 25362.4376 30253.5637 63502.9517 32527.7308 1213768.0574 96999.5377 58890.6496 24463.5613 44472.5575 56106.9275 35657.7029 166824.8975 148888431 phenol_oxidase Carbon Cycling Carbon degradation Lignin Phanerochaete flavidoalba superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 11921.7344 266340.6345 4218.6292 13417.5194 14143.5704 26991.6775 6856.9075 14735.3069 19185.6389 17748.2172 297316.8438 21609.3229 11372.3346 11011.4952 11989.3182 11989.3182 7615.4208 50031.7108 13499.0483 15238.7845 57300.8925 173997.0238 7867.0865 8762.7199 20306.3439 6772.692 29613.8005 14778.7525 41367.4014 6278.5674 21863.7526 64097.8488 14627.6429 24612.8298 81300049 nira Nitrogen Assimilatory N reduction NA Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 23276.7081 218674.505 24349.3744 7510.5437 4491.6587 7559.0893 4039.4233 3304.4778 2857.3625 2857.3625 7018.3267 16718.7543 9847.069 10258.0496 6288.99 8231.5975 9686.4869 12095.4989 37404.0029 4014.8786 22518.7411 29634.5165 18126.4703 10820.9402 3656.2321 12679.5765 9019.3265 262198974 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 15346.7564 41785.0144 11222.1016 23696.1075 35805.7286 8336.542 10885.8 137044.5943 33405.8443 58693.2031 18361.7101 18258.6171 127619.0074 17559.6135 112342.4028 21525.9361 13833.9263 13833.9263 11218.4301 111154.8924 32802.4202 33474.8217 104905.857 16357.7057 8386.3472 17851.5981 37582.5706 25626.6992 67570.0217 39872.9231 75643.6427 15924.4361 36409.3105 8887.4252 9648.935 10149.458 116077919 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22899.9263 7414.8149 12421.1251 9373.1003 41908.7965 8979.0452 7232.9619 13787.2648 14310.809 11484.2646 222945.4753 26924.3972 12318.8214 15236.1606 9518.8425 9518.8425 12670.5823 19416.477 12472.0544 17414.249 14110.3517 20292.1128 8622.1847 20768.3785 18572.4965 7567.761 28494.7681 9197.332 16270.0745 9141.5289 11845.5025 12433.1207 8933.1577 20976.5812 359787975 pcag Organic Remediation Aromatics Other aromatics Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 146025.9035 55466.2964 201163.493 53387.6507 62669.3515 16788.9718 39057.552 89103.1095 67025.3334 41040.2563 85523.995 31583.3535 1103400.6626 60525.8825 65695.5356 47085.592 36862.9718 36862.9718 59101.7086 91601.1151 42585.2497 113369.8229 69708.6928 84976.8501 46877.7646 34133.801 60097.3825 37182.0881 106643.2813 44245.3646 95422.9864 172817.3267 32859.2966 46327.1364 35317.8514 294707.6201 398027245 trze Organic Remediation Herbicides related compound NA Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 14143.4581 7204.974 7038.484 3999.2906 8305.8513 3217.7999 5906.274 8835.3871 7701.9995 111623.1211 10288.552 9983.1359 9567.3327 3252.5035 3252.5035 5204.7652 13636.5677 9827.2893 9818.2511 8509.2002 8085.8914 5342.043 6838.0788 6693.0886 7608.8283 20610.8803 17021.3644 9757.1447 7319.0749 12514.5827 7570.4257 9789.2946 13864.659 171060823 terc Metal Homeostasis Tellurium Detoxification Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 10918.2815 5394.2747 115569.2401 3686.0318 8443.9516 3877.0289 7262.9159 11697.5824 6596.5101 126822.0318 9421.5052 11305.1925 9544.0585 5855.5664 5855.5664 6669.1122 14794.0224 14411.9359 9909.508 41586.1801 9560.8828 4619.2776 6454.1828 16694.9528 3627.5764 28592.3725 56729.2012 14346.6876 8021.6219 7256.2991 8944.2347 4365.3856 8050.6484 358752126 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 8854.9886 7213.9025 10768.0492 3306.1911 5522.4854 8291.1652 3809.0034 93874.0151 7814.8719 7395.5965 32531.9868 32531.9868 4929.3956 12124.2403 10271.2053 6696.3119 14333.3601 19111.1614 3735.2202 5572.1021 9264.4797 3721.4847 14339.6541 9146.4874 9475.5341 3660.3647 3984.9488 5002.1688 3816.7519 9412.7143 297630086 arsc Metal Homeostasis Arsenic Detoxification Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 28555.9651 64851.5357 15127.0932 101179.4771 51524.0307 6346.0019 10030.0273 6473.5257 19880.1576 231749.5947 22863.3274 473828.7921 47266.165 48224.8422 40001.0111 35114.8254 35114.8254 21580.7348 36438.0779 18207.8184 7729.1721 25614.0777 29082.1743 52344.2419 18029.9028 38325.9367 13682.3532 56372.6452 40455.2759 31990.2189 21293.0529 13205.4072 18835.3142 13758.7242 7838.1231 315052220 pcpe Organic Remediation Herbicides related compound NA Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 143381.1865 78854.2523 181067.8502 96236.5776 80287.2706 29417.2624 96024.6165 152081.9115 550577.3808 113845.3599 251801.787 101749.9338 2142601.085 232729.9965 202512.771 161519.7475 214475.1186 214475.1186 58816.8127 151276.5529 105607.5132 201728.0579 281232.3445 174395.1872 79551.1158 97407.3176 122648.8054 79766.9351 253738.4269 90310.8033 155269.4291 99526.3052 78025.2614 89710.0677 57794.6827 663976.3721 334733735 endoglucanase Carbon Cycling Carbon degradation Cellulose Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 79926.6935 19524.029 40463.3389 26584.4952 8958.38 47619.5416 51582.3173 215843.964 51930.1456 48238.1066 37727.0688 1037310.1352 78280.1499 48274.487 51127.9861 32069.5947 32069.5947 19308.432 54071.0867 37721.8309 154811.7803 63108.8871 36754.9325 19804.7359 31137.4006 31315.4689 41946.1061 129434.2669 31591.3556 47476.8743 41169.786 32922.3981 37120.243 30506.8468 45430.9293 380732047 amyA Carbon Cycling Carbon degradation Starch Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 9169.684 5820.7346 9607.9538 2685.1345 3227.8762 3211.8688 6523.8286 10705.8456 6406.6311 250061.47 135251.1311 5771.4151 7398.6359 18291.8749 18291.8749 4763.3341 16087.3812 8055.1536 10100.5591 9290.5149 11836.5764 9455.7238 6612.4195 8607.5477 3960.9984 20285.764 5641.354 13211.0094 3285.5348 6897.206 11314.445 6351.8207 42340.0188 40062869 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 442 superkingdom:Bacteria; 579752.7301 2616.6179 2253.4924 6704.0658 4420.4549 2610.9634 98699.3382 4614.0537 2616.0715 2616.0715 3641.5566 7279.5279 5690.4284 7407.5992 3658.6952 9031.7909 2406.4749 45858.5584 6969.1043 6724.8453 2401.8918 3866.8676 3832.558 5789.8255 62003515 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31917.7892 31255.8301 67390.5416 11181.9084 16711.626 21371.4759 106364.9985 52136.803 37766.1712 18245.1434 28182.6961 20815.0418 1214269.4001 67785.741 26821.6445 49102.154 18438.9552 18438.9552 18220.8571 60122.6386 29442.5196 107435.1226 55347.9136 15827.1911 14073.0296 37993.3319 23469.8438 38899.0685 94110.0938 53497.9032 32091.4026 23978.9239 72602.9648 19055.051 73826.3881 43040.2705 257171027 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 40039.0535 35977.3147 27728.51 14059.8817 8890.1109 11196.6319 25476.3304 21089.4368 35172.7885 111775.3077 29403.2731 517578.0771 44456.2998 29204.3251 20825.7002 29400.82 29400.82 15412.9694 39944.8776 23816.5062 33918.8406 50233.3738 42641.0914 15406.7965 19579.1561 21453.6715 16790.0452 46300.7432 12463.3035 43740.1839 32749.7423 24220.0687 35893.8729 21071.0377 38884.9561 394730518 dehh Organic Remediation Chlorinated solvents NA Enterobacter sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 6476.1288 630765.2392 5394.3737 7489.0931 2405.7158 5670.8682 75305.0737 13566.6468 4245.1958 11791.8976 11791.8976 55926.6197 18116.7996 6608.1376 3377.4668 4119.7368 4580.3122 2894.3729 6471.5998 17915.9378 2666.2654 19203.0383 4911.4869 7450.5723 5417.3591 7829.9228 5405.3074 2639.3404 5895.9413 118424413 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5018.9626 18165.6642 6542.904 2410.7487 3741.0431 7648.5847 146940.649 4296.5072 9722.106 8238.4659 4929.9767 4929.9767 3685.8179 8623.2487 21283.8296 4010.5523 6984.8687 7594.593 11006.4707 5298.0768 11013.2051 5224.0452 8651.9174 4988.9675 7728.2301 4288.9358 240171054 cueo Metal Homeostasis Copper Detoxification Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 33515.0953 5803.5285 8628.5252 35411.6955 12293.0267 6470.8665 41839.5537 37242.3515 17333.4845 21254.7619 19448.4101 247361.3827 21383.8418 23462.8609 23941.2053 29570.1306 29570.1306 28745.569 63985.0399 24171.329 35148.4024 17206.9933 6979.7963 9316.9071 9274.3107 31362.5759 14046.8997 38640.0772 27454.7681 24036.6244 32811.8665 10725.3021 12262.2017 8319.8855 48136.1014 237811237 pcpe Organic Remediation Herbicides related compound NA Burkholderia pseudomallei MSHR346 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 6188.93 4859.3569 7909.1718 3620.4293 3409.6607 3746.9037 224116.9305 25672.454 5689.2608 8059.6597 8059.6597 4501.2437 9282.4663 3550.9941 5123.5364 82821.2136 4430.0365 5428.4137 7359.7446 4137.8886 19557.2107 5661.9848 4193.361 4603.0722 4447.8708 12501.7649 88863738 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 5830.2138 4747.7051 5353.7671 5256.5758 13961.8098 6182.8555 2384.812 116044.7008 7924.7929 7550.8644 4847.0008 8718.4774 7165.6187 7419.4222 6044.963 2716.1712 4045.1113 9714.2189 3866.4817 15578.5502 6951.6825 10033.9432 4152.8858 6048.5707 6981.6071 4034.8243 335865542 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 147376.3469 23922.2468 594752.1582 145098.845 245974.7685 64410.0782 113264.7163 249077.1893 158418.1569 104855.9541 134656.5201 201741.0177 3203629.7424 139904.5243 374026.5185 322378.3494 217854.5184 217854.5184 460058.6825 159724.3352 107977.9169 334850.8726 237339.3053 102725.3781 102499.5351 112420.9858 208168.649 123763.6122 314093.5134 257475.3027 242569.1109 98993.6295 125683.5418 163798.6036 70865.5272 407261.2152 256361823 linb Organic Remediation Pesticides related compound NA Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 15050.4787 13390.2319 13885.0773 14671.5561 78248.2335 52136.6724 4922.5936 14568.5338 4932.9298 11156.7732 18298.4828 11242.7592 304137.6348 24266.7466 17585.3851 23311.5721 18363.9273 18363.9273 9149.7301 35217.0344 10970.1531 11621.0452 36957.4746 9488.6513 6924.1308 11688.0535 37135.803 10833.2121 24061.4295 25001.7612 35025.8532 9529.6675 14333.8897 19752.8458 5934.3047 9219.4262 239802863 tktA Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 77715.3487 2684.3426 3935.4627 177266.8486 6980.6243 7759.7289 4422.2845 3368.8559 4311.9462 3449.053 3449.053 6683.9225 6410.1 6672.8093 4799.2563 2810.0783 6808.5493 10752.781 12379.1944 6116.7066 4979.447 2961.2164 7309.2749 79196.0949 132729.9291 386824590 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 8006.9886 7957.4046 5161.1842 5454.5747 4984.8234 4063.1045 8558.6931 10399.6966 5431.853 151588.7908 14062.3587 7688.2164 4592.0037 3780.4953 3780.4953 10162.8369 22222.1876 10277.4895 6140.6524 10956.936 6216.9209 4447.1395 5474.686 11513.1716 5150.388 16706.1432 12840.8308 13103.5783 4377.4498 6286.8814 13174.3297 7681.4744 12540.1454 328542948 arsc Metal Homeostasis Arsenic Detoxification Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 57430.3656 33466.0533 7408.9649 31720.0673 40474.6732 107318.1757 46729.0036 31838.0285 30921.9394 95818.9897 467780.0078 38353.6298 106467.5608 59272.4183 93876.4033 93876.4033 50651.9729 92190.9426 30050.6837 35393.6961 87410.0076 31953.0331 36152.2963 88321.4771 60658.9134 36863.3998 104617.3904 63389.0068 62189.1901 23428.6146 70605.9276 93324.4493 31107.606 187805.0696 70672909 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8074.4145 6121.6452 10194.7763 11996.8908 8098.6142 84293.1221 9418.4574 7814.7714 13645.0342 7152.7671 235262.619 6689.4414 7888.7669 4037.9917 4783.4659 4783.4659 6504.3092 11715.0565 10024.7077 5754.6106 9210.2856 17639.7543 4654.6628 5374.8521 9512.4198 7357.8586 35201.4132 7801.8238 11724.4256 4485.5871 6021.4637 7218.9719 18482.1925 9834.1075 310822556 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 57107.6876 46869.5072 34763.15 59506.8299 65512.3648 184500.8277 76366.0359 59795.6607 194934.5367 30480.0912 41796.9575 37652.7423 1401586.149 63171.9991 56921.9535 59907.5023 33980.6053 33980.6053 31113.3629 46380.5395 35841.4865 43843.2947 79348.2531 53110.3964 40837.4074 30344.6153 60129.4634 34476.7112 182625.0871 28799.7075 54635.5701 188452.6388 32932.4349 34346.2979 24831.7428 48896.8968 88698879 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 15517.3376 8658.2453 164713.2893 55408.0356 7518.2034 10338.6467 6262.8562 4054.6634 9478.8137 14018.2163 6908.5215 458479.0928 13929.0336 13806.2617 12772.7844 7174.4486 7174.4486 10485.704 23914.6581 13075.1601 9101.1214 19944.5575 20626.5418 6544.8978 10069.4731 22722.4992 5630.5837 29911.9694 15583.1865 16995.2673 6345.5329 13722.2183 11271.4267 6852.7823 14841.7071 299739072 endochitinase Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5908.7976 19618.6402 45311.079 7080.9708 5123.7889 7121.005 5882.3433 6738.7634 3715.7753 126387.121 8597.2694 9610.0091 8340.8403 4661.958 4661.958 6218.3527 17411.0692 14399.4696 4689.9071 7170.0961 2213.6216 6390.9772 123961.5996 5999.6311 27822.0959 15387.1787 16672.797 7383.4212 9030.4398 4627.6001 4118.4566 5491.5978 391877573 xylj Organic Remediation Aromatics BTEX and related aromatics Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 6508.1408 11478.5377 8155.5865 3873.8454 8551.2089 3650.8197 6513.872 6094.7725 2495.4325 93702.2766 4476.7783 9317.2881 2540.5249 2540.5249 5022.5296 10923.2343 5349.6211 9059.2882 7675.0474 6048.2496 3660.4424 3346.1106 7623.7213 8950.0761 16526.3284 5422.5628 10941.213 4490.7693 5056.0646 5726.7826 4464.2666 13635.2406 85091086 axe Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8065.6624 7289.4096 13963.9226 3604.6595 6333.2318 2639.1398 103926.672 3926.02045 5604.8184 4030.8588 3558.9984 3558.9984 3645.5434 9075.7875 4723.28685 5914.1803 8791.707 9238.8792 3565.7147 2214.1458 5676.20215 7237.2869 7241.8722 4201.6657 7664.8136 2432.81105 3992.06915 3735.04865 3719.5143 37726856 dsrB Sulfur sulfite reduction NA uncultured prokaryote 6851.4494 9878.4775 4494.0469 5384.1408 6814.7771 10748.0638 5786.1366 4177.7132 8991.9374 15620.764 18370.083 18370.083 4858.1921 8683.472 6402.6669 5702.5227 6734.9749 9137.1389 6841.5467 98623.716 9230.7132 4913.9233 2090.3977 12175.5137 8485.3055 4610.2628 392943514 pcag Organic Remediation Aromatics Other aromatics Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1069704.7292 18171.6011 98908.1307 41671.0729 36326.859 13665.5766 29278.2677 92522.2766 84525.9125 55159.7676 148791.8144 64088.7355 1355172.1266 51951.7734 76603.7867 98218.5717 77025.6128 77025.6128 93507.018 85341.8409 42761.1676 57087.1013 184635.7402 230956.6604 67524.3195 69114.0462 131969.215 63000.1431 146450.9737 89644.5113 81908.6225 54917.6627 70892.4226 83188.4669 102933.2523 97920.1917 292648068 amyA Carbon Cycling Carbon degradation Starch Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 40331.3446 64253.499 14292.254 13007.6558 13204.8016 4869.3935 19605.8783 22115.8217 14673.0926 15894.0661 42472.0735 14803.5972 489967.7959 25154.2057 37785.8964 20296.9325 21601.1529 21601.1529 18369.2324 38097.9798 26898.3739 53142.6222 33288.8739 26511.3366 14791.141 13342.4782 28758.563 17748.5571 112372.5664 49355.976 41450.5243 16708.4181 18027.5181 15173.1964 57108.4536 38981.2284 324108219 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 22238.3085 6292.4486 8122.8046 6603.0922 54261.7855 8294.2321 6372.0184 9638.1124 56330.6029 80310.2219 16362.2755 4623.7604 29324.8597 8005.7704 8005.7704 3925.2038 14233.4314 63849.2186 144894.0966 20861.7828 13586.81 304887.2433 5337.8782 10503.7047 315875.5135 18953.6611 11386.787 11781.2716 247119.3548 8062.1903 5767.6151 6293.8327 14075.4411 151302301 APS_AprB Sulfur adenylylsulfate reductase NA Desulfofustis glycolicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 18019.7152 10633.5898 13502.2767 72875.4519 13603.2021 9155.8276 8283.7791 10716.7927 19421.2107 9158.6785 281061.5548 17071.5969 16516.2028 12593.23 6530.3164 6530.3164 13119.5712 29611.4243 14976.1204 18245.2489 37276.9836 30140.9102 10575.3597 10231.7408 16536.911 8238.17 42572.3096 12742.3104 20394.7312 12943.0007 11853.0085 62329.1211 9711.267 27988.4104 74038278 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5792.8393 4593.6424 3189.6805 8990.9373 6747.8916 6789.2117 7746.8476 7505.9271 2213.8112 2914.4611 239831870 arsc Metal Homeostasis Arsenic Detoxification Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 202207.8509 350374.9251 70362.7337 90881.477 16289.0443 119308.7051 440015.8458 101289.6217 39738.8463 66795.2714 70523.4062 1081934.8775 82037.5889 80764.1882 127888.0686 65858.4503 65858.4503 237463.2528 120827.5974 122480.8028 607894.4915 105898.5236 79153.1392 34902.0742 56207.1838 58880.2538 58278.9645 153945.1787 144552.4308 122468.2235 37728.7736 92431.3783 64908.5748 41360.861 413642.2155 151357412 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6960.6923 27627.5072 9695.7326 4247.3166 6470.1745 8653.2188 5963.5535 10103.4111 15193.5408 111337.3721 10516.131 10316.1172 14842.2025 4404.0034 4404.0034 4646.0831 10861.2217 8716.7265 8214.9387 12211.7317 6543.2413 5421.4638 9043.3677 8338.8764 11781.8741 22522.8103 36124.9362 16837.6796 6164.1938 14163.6881 7492.4691 15521.9399 10265.6349 270334262 ppk Phosphorus Polyphosphate synthesis NA Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 112185.6798 123011.7997 5536.6941 316800.2451 43075.6481 4026.2666 18081.6698 6695.6077 9540.8492 10582.7151 11691.1988 97413.3442 8586.4685 8191.6977 15972.0318 4479.3242 4479.3242 15448.9276 4813.624 5260.9949 10400.8589 26735.9747 2853.07 13359.4113 10586.8589 3088.6637 16040.137 13185.298 9495.6342 3272.161 13884.1021 77177.3808 3765.719 63288.1522 78514625 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 550301.9394 104489.5416 250961.7667 193361.7321 2124908.3206 1934296.8399 272153.3337 322611.8952 270447.4787 303594.6081 442670.9882 235109.1597 5659010.2414 733051.5341 523712.6657 515336.8283 310050.3974 310050.3974 205948.1769 435291.556 159124.7255 370053.8912 437129.921 801932.9789 230725.5135 201958.4087 648174.4438 166066.8701 919428.2287 472738.0035 407678.2223 193183.4003 167781.2905 266802.0469 199401.6799 531855.2631 194292772 nirs Nitrogen Denitrification NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 4440.8371 14253.5 3163.0897 3234.1072 8197.2729 4095.7023 6489.0838 4555.5745 2659.3883 10021.7524 4814.5334 17799.7053 6419.7159 14200.6563 6072.5843 2300.7678 70731219 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 47507.5488 12763.4387 90485.8903 22320.2025 65484.3971 13781.3707 79891.8856 23443.8784 18248.0128 20299.6031 35832.379 47643.9132 473170.5365 30980.0774 34984.8339 67641.3826 40289.3349 40289.3349 23446.7519 84117.5089 25180.9213 55783.7301 117050.083 73048.1444 32689.602 31455.146 34115.7021 17293.8567 77450.2226 37537.8525 44028.7591 12717.8591 21924.5928 40824.0574 14715.8643 30467.2627 359787952 mer Metal Homeostasis Mercury Detoxification Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 6034.1592 6107.1211 4342.7132 7507.4896 5912.2681 4470.3727 3479.0365 5395.9392 5542.7354 3619.5314 128154.7917 12986.4195 5944.963 4841.7238 4841.7238 5220.7996 10965.9621 7501.5617 14265.4299 5286.8092 4936.1486 3932.3943 3824.1326 7079.9769 2087.8738 14424.462 8746.4326 8023.202 3351.2251 13063.6604 4725.8125 3931.6533 12580.375 157780230 hsp90_Choanoflagellida Other Phylogenetic NA Salpingoeca infusionum superkingdom:Eukaryota;order:Choanoflagellida;family:Salpingoecidae;genus:Salpingoeca; 25048.5527 10952.3526 29294.5355 6875.4271 11483.4837 13837.1516 16840.9143 140273.6518 13200.1898 267976.1395 28931.1104 29344.643 28839.8561 24167.799 24167.799 11384.6261 36526.4959 13499.2636 27118.4627 15275.2414 36703.3929 21711.7071 14890.2866 18883.5526 18359.3169 54674.9915 52040.1637 32547.5386 7247.0678 64949.2422 21898.5284 75919.7279 14035.15 271963453 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4687.5796 7467.4185 3542.6015 7350.0172 57539.7143 4418.8264 16431.2665 16431.2665 14394.7418 2969.0085 11230.8914 10558.4369 4893.8276 7993.0587 7338.1761 13079.6516 4155.5742 11540.9296 7282.3356 83590465 dsra Sulfur sulfite reduction NA Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 3962.2681 19473.6678 3231.7509 36805.9216 5135.1522 3281.1635 80811.9021 3932.513 5475.3719 363550.8052 363550.8052 12948.5087 6596.2082 6455.58 52333.2378 2532.4412 5526.7486 5483.4417 2178.6946 15353.5547 4755.2506 5816.7674 5112.006 7347.0575 2636.1999 6191.7303 302581976 cysI Sulfur Other NA Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7796.6789 8380.031 3869.3789 3757.0841 4208.7244 69276.5297 5856.1738 4743.8562 4743.8562 9181.8235 5674.3491 5244.2297 8747.3894 3485.0495 3266.1398 9685.0283 2916.6505 8701.1517 8193.0871 8700.413 4368.4901 3984.9464 12320.4856 2971.0592 4625.2988 356663179 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 15557.463 80885.9048 20194.4143 8900.2149 7361.0249 20207.3671 22031.3846 9827.6346 19206.7673 159496.8532 10680.9562 18959.8276 16164.3766 15776.2508 15776.2508 11770.7115 17339.3597 9810.1523 18579.041 20753.9961 12956.0622 12839.8337 7987.6667 38452.301 12329.5127 40759.6099 18270.0263 20079.4559 6369.2586 17259.5479 41134.7904 11600.6616 12032.1257 125712789 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8687.9433 7018.3985 4715.5928 2749.326 4230.4128 6276.2899 2647.8707 95177.505 5763.9943 3206.2909 4475.0338 4533.7676 4533.7676 4451.632 13437.7409 7566.1849 8075.3972 8663.3114 6317.508 3499.9719 4856.8044 7066.5538 9245.185 16795.0359 7182.1758 12657.1862 4995.2845 5808.6328 6125.4041 75235.0411 12895.4749 142202 catechol Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 112910.7299 28006.2067 14279.473 37057.5769 9670.5831 9242.7325 5038.7603 9335.6078 6689.9908 15754.1661 173118.9988 9109.0973 8659.2611 29420.1388 14338.3317 14338.3317 3201.6134 21109.9593 9180.7195 6025.5936 8146.6223 6677.5227 2971.3518 7017.7618 47789.1982 3988.2239 21177.0307 15495.1137 20384.8017 20278.6543 9588.1327 15562.8465 3535.9712 8686.3579 384256402 phn Organic Remediation Herbicides related compound NA Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 17676.1513 4675.4423 4844.1718 4814.4818 6423.2511 3580.8858 20784.1744 8011.5799 3614.4038 120753.9969 8217.2235 6395.2515 3958.9405 2017.1912 2017.1912 3695.2658 18118.0137 6646.4 5819.4075 6937.6587 8499.6778 2539.6452 2906.6959 10034.0921 4170.8601 15260.8756 4907.7797 9441.787 6044.2648 7020.4682 4423.1852 3046.3631 12871.4449 139003464 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 42298.8445 5449.8794 6920.6447 2988.0946 5548.2115 4851.336 6293.6614 3875.2566 76252.0654 5601.0321 8198.0084 12545.2177 2346.733 2346.733 4622.4916 7380.5761 7096.1827 5020.1336 54792.5681 5144.0495 3110.3331 3808.6661 11916.3591 5093.9015 17764.4468 9228.1315 9070.8305 5022.6568 6940.8009 5544.8564 3295.4246 7126.9503 83851004 PRI Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 4068.7696 5284.2435 5336.2162 53997.8513 2414.6649 4335.0801 5620.1509 2851.1957 2851.1957 8128.0041 5266.9796 9354.4192 3531.5666 2612.1344 2605.1689 7563.1394 2026.6329 3650.0044 3757.8325 3211.6326 379990269 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 21416.6904 10800.7416 8652.2848 8530.8676 4725.61 6431.4894 7463.5954 21294.8808 8659.1676 35375.0126 238762.6365 7619.8424 22926.3254 5648.4559 5304.824 5304.824 5984.8894 20719.862 9232.0298 12223.5736 11597.5012 12186.3895 4109.0445 7426.6477 11942.3038 5324.7196 26119.1783 11359.3537 13283.2615 4559.035 13456.6062 64620.0448 7326.9018 12532.0776 325471063 pula Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 4_1_37FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 56175.1847 24025.6113 122215.4567 9258.8742 49688.0013 7516.1574 23487.9826 82612.3297 35645.9591 15728.552 37704.543 28327.0712 572073.7453 53094.3556 82804.4341 42079.046 42672.1401 42672.1401 22932.5618 231616.653 52127.6413 28514.7598 212555.4126 14674.2406 74425.0852 20542.1082 24034.1608 61753.9572 80755.8348 53856.5829 58509.916 16491.6118 26629.8932 53118.6421 26435.3167 1080500.6364 219948697 phn Organic Remediation Herbicides related compound NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 9040.3877 61720.1901 4966.9172 10962.6092 17543.3969 12268.3781 5574.4726 80965.6141 3556.7225 3556.7225 8646.0532 2173.4826 8283.2106 4594.7958 6013.2698 4898.158 3660.2144 4088.2125 22294669 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 24824.7523 30495.8328 14162.4834 33963.0764 66307.1978 23103.4319 26618.1208 28774.3945 13178.5104 25293.2191 30465.3939 13899.0861 961328.449 33323.4772 47012.615 40173.9378 26959.7318 26959.7318 30307.053 34395.5802 30740.7596 26129.3691 25322.3597 34263.0187 14411.3814 28431.9978 65706.1419 14163.9936 76284.2945 98552.7245 48066.6126 17834.0343 19968.9558 23619.0221 15247.103 33944.0933 348661162 ppk Phosphorus Polyphosphate synthesis NA Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 4425.5895 8242.5523 3389.7915 16213.7929 3827.4185 5763.1487 7677.1206 57789.2267 6199.1428 3641.3627 2688.8088 2688.8088 3284.5706 8974.3963 16083.0814 4425.171 6119.8939 7200.0624 4092.0193 10979.2407 3727.9115 6766.3878 2916.1656 4030.7476 6996.8137 145248179 tfth Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 14123.5948 10283.5304 4400.66115 94264.92995 4561.2116 15666.8607 15666.8607 7432.6628 3535.46365 6711.60265 5594.0397 8820.8704 121305.9895 6086.0582 12427.7573 4873.4062 5695.5924 9471.28175 4920.7648 333991917 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 11313.8639 326820.9754 4812.6815 5755.7685 103905.0229 2588.6426 5223.3591 8013.0058 12567.7759 62817.298 4307.2773 8594.6122 7296.6182 149245.165 149245.165 19464.6163 10722.9655 6701.6365 23007.2966 12802.8155 10589.9642 10451.4336 4397.1462 11178.1307 4775.7529 23200.3328 7198.55 22770.7695 6602.1868 6607.5731 9169.576 3944.424 45007.701 89512954 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 12254.3436 10547.8934 21805.953 7931.5239 9248.3861 10136.3552 5741.8728 10614.6966 13432.5803 14547.1208 213570.6779 13974.5063 12926.4418 7499.8505 7309.995 7309.995 11206.0815 15728.4852 13208.6092 12934.4785 14969.1465 18879.9327 7949.4355 6112.865 15789.2449 6077.634 23217.8272 12196.1236 15749.3799 6292.959 9595.5878 9498.9975 5725.4432 20014.5969 323470849 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 392704.2603 6351.3314 8500.3656 33344.5284 34969.7432 10971.4569 12609.0703 22614.2345 14209.7694 75238.4916 18726.8609 434046.3415 21393.5473 18656.9592 17061.7671 23660.2064 23660.2064 10998.5575 20619.7096 12440.8613 20893.6819 13894.6786 13972.8018 21601.4304 13590.235 92226.9158 16250.7717 176942.5241 22777.1314 32595.6419 9779.793 16261.3324 31627.2299 8570.2694 20766.6379 378951352 pcpe Organic Remediation Herbicides related compound NA Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 29778.0099 7473.9157 21345.2248 14058.8259 19602.8226 7830.649 14853.7505 11182.0127 143125.406 18530.0151 25584.9108 12290.0201 17063.1613 17063.1613 12777.6195 27312.4568 23899.4108 39632.6955 26264.1978 12900.0204 21506.6905 19726.1757 15916.3616 12300.8602 44184.3926 22589.0139 21738.0226 5981.4638 16579.2114 12177.9645 13855.2713 20108.9302 291549743 amyA Carbon Cycling Carbon degradation Starch Ruminococcus torques L2-14 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 10746.7785 155645.0025 23874.9855 329553.1214 10514.3331 11508.4174 22628.0826 11477.3366 46510.2894 7210.2024 80149.9863 15806.8465 9036.8049 19092.3868 14704.2858 14704.2858 4566.5081 9665.9428 6950.277 9823.9471 19486.9321 6035.051 2752.0937 11724.1584 19840.5788 4785.8567 25433.9738 60531.336 17385.1855 2763.4307 20350.3418 9968.1819 3981.404 5111.4107 383775931 ppx Phosphorus Polyphosphate degradation NA Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 502244.8841 25133.9579 99231.6055 92228.49 126191.756 40600.4149 77302.3951 55689.3914 66423.4979 44108.2616 117450.8372 53799.1971 1372650.9025 86902.3293 104674.2104 64417.15 56194.8684 56194.8684 62661.7207 101173.4242 77306.7725 101864.1214 177784.8513 119960.375 51157.0107 54740.9631 79157.7794 51656.6026 130275.335 83764.9543 85578.5211 33996.619 51190.6257 57126.3268 38354.9713 115121.6081 146192101 tfdb Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 54867.1551 17791.2152 143874.4643 24304.8395 5834.0588 15099.76 28505.1686 20912.8613 53587.9159 30336.868 24824.5562 932468.4227 42905.5551 44213.1272 38730.461 224549.6132 224549.6132 25697.6824 37066.9527 18919.5662 148672.4559 63261.4321 29929.5676 14973.6433 25615.096 46478.6889 32558.073 60264.5984 44070.0283 51689.6123 18340.1555 17074.5039 43669.0568 29741.5629 33593.2023 149125064 pcpe Organic Remediation Herbicides related compound NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 10169.6667 16307.188 5606.66 89177.5278 71064.918 13733.6263 11641.9509 21487.7491 4400.9525 4400.9525 12231.2325 7115.7414 5606.1677 4070.7184 5420.6505 7286.3805 9756.9184 5000.3588 16280.5031 6861.7384 3737.7955 73487247 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5020.9582 8437.3382 2321.3644 3095.4943 2006.2525 2701.9322 41276.3223 4507.9151 4262.4958 7914.6969 14695.2844 12198.9165 5656.3057 5777.4582 4959.4655 3003.3091 4716.7308 10330.408 9970.6412 7460.8446 1938.4709 2916.2035 17679.2973 3393.5344 4742.2858 268611162 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 18515.4981 11579.6677 5040.815 4457.6689 4269.5473 5763.0789 11399.8072 72371.4621 4439.3976 3701.4131 5918.6797 2650.4308 24179.5378 9721.098 18638.3873 11533.3881 5879.4684 102730.7206 4944.5405 6893.0211 3091.3381 35129.7097 10220.2121 9183.3411 6281.9604 6834.5178 8872.0119 5194.2678 46615.2141 92112446 pcag Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 32305.6144 6625.1851 21481.4078 13342.2785 22834.6646 7275.9157 3526.0671 3923.6317 10113.3577 23087.8556 125456.1419 6097.8704 10340.9791 14544.7851 12254.5636 12254.5636 4558.3535 8806.6688 5669.9406 3811.911 12712.8626 5834.8386 5354.331 4475.422 10462.982 8813.9457 42993.2422 10182.4419 15995.7482 4733.6769 6669.1691 6784.2173 11819.4635 6797.7374 51893626 merb Metal Homeostasis Mercury Detoxification Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7301.4363 7464.7218 18582.2725 18582.2725 19116.6431 13852.4972 8596.0107 7182.8867 2258.8066 4062.5319 6475.3131 5789.6978 3957.6346 14918.0327 2745.5806 5145.1017 6575.5329 403120727 xylj Organic Remediation Aromatics BTEX and related aromatics Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 53340.6316 18179.3443 20531.5832 24643.0245 16445.6406 24143.7531 12649.0882 13781.7776 18164.1432 10016.7942 369135.6266 37481.2402 25650.1262 29451.2847 10291.6938 10291.6938 9267.3833 30417.6494 48420.1409 15144.9181 17189.985 24033.7995 6014.4147 11506.0357 22270.3905 15320.2715 64678.5716 98060.9372 24893.3592 15580.5488 12932.1222 13586.4171 10995.3442 24404.9078 87135181 chnb Organic Remediation Other Hydrocarbons NA Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 10527.1337 12719.9148 13938.8818 4057.0548 28139.2366 4738.0684 4273.7918 14636.8265 82860.4935 4782.1206 6127.7733 5405.1341 14938.9757 14938.9757 3132.686 17461.7285 8535.7383 8909.7737 10592.0348 4810.1264 2956.1243 3978.7063 6489.2024 6478.5748 18599.191 9735.9839 13186.7845 5332.3241 22448.7925 9502.6607 6346.4033 8941.9123 214036822 tfda Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6521.5126 3333.6175 7447.8891 5098.796 7610.4521 9635.3861 4020.8807 74060.4342 21027.9376 5132.7211 8487.5582 4115.4095 4115.4095 6650.4339 13881.3184 7522.1547 14184.1612 3485.0633 3874.6352 10130.5893 4003.2618 20288.1457 9121.9281 13710.6693 3678.6345 7440.986 6380.664 6778.2438 13925.6784 147885988 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 26456.773 8718.5075 11002.4179 9621.3773 378550722 amyA Carbon Cycling Carbon degradation Starch Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 24109.8611 8702.4139 18566.6152 41212.1413 7277.683 8874.8625 10226.5084 5638.7333 15073.0576 17815.1591 7838.6744 279402.4388 15452.9051 16269.1414 15101.3536 8492.8698 8492.8698 9069.4471 25026.7975 13413.158 18826.5771 39316.001 100030.5111 19483.4471 7946.8747 25265.4903 24271.4381 36775.2488 15170.3865 22901.9819 8124.7351 9815.4613 19055.6577 8353.2425 80297.1289 401669358 catechol_b Organic Remediation Aromatics Other aromatics Arhodomonas sp. Seminole superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Arhodomonas; 4613.4681 4075.1562 2840.4204 4778.9972 2137.7551 4505.1869 66286.6169 14573.6819 2503.1127 2503.1127 5284.9858 5827.4744 2502.3129 2636.2185 8447.4969 6601.6721 3487.9737 3568.151 3436.6767 4262.2906 7381.3246 291460244 ppk Phosphorus Polyphosphate synthesis NA Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 9114.8943 10117.6739 12831.1446 9585.0575 8426.0878 5412.2332 3758.507 10215.0748 12128.475 4979.8746 214193.8789 15447.3928 12611.4424 11837.4912 11566.1772 11566.1772 12812.3403 23263.6665 13463.9935 19796.4182 14994.9667 20121.5529 8191.2428 25648.5058 16762.3314 22686.1994 24544.3411 9391.1136 21485.7818 5718.7721 9089.7911 11990.4813 14831.0634 15600.48 356639591 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. KA-08 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 719119.7729 146776.294 608456.4328 761551.4262 399641.2955 967047.6622 533829.0484 722262.2937 782977.9995 569672.7111 489594.7017 352039.9985 10948804.5273 572490.1272 760109.9077 1714833.2885 659348.5214 659348.5214 390884.6836 696288.7151 442342.1048 852066.3302 842449.0395 960155.2599 439816.0553 378079.1035 472929.3142 295663.6707 931832.3498 513843.9452 514572.7334 392385.8184 352486.3307 371016.3632 286447.1776 1334512.15 160917595 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 163211.2205 122905.3519 45631.9742 57540.4853 43653.4282 57673.7669 81490.6459 69204.5994 93781.7419 110095.5593 94057.4844 569388.6969 63108.9852 142064.6815 233579.0178 96996.7261 96996.7261 45783.0982 123700.1803 30738.7545 155587.0594 271181.9824 197028.5608 88574.1395 91834.4941 157103.7646 83521.5721 152266.4706 196138.9584 96433.6959 58317.0596 67941.2284 143045.3386 51857.0167 113480.9228 209401900 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11664.7605 5275.2456 5855.6999 15048.1397 5245.0496 3878.2827 4991.1181 5093.0622 7023.5256 16389.2261 10557.6297 283570.3998 6869.1418 6896.1886 10433.0263 7827.8294 7827.8294 9506.4596 15243.6586 9777.9737 4466.2841 7441.4222 7576.3266 7824.4092 7337.7621 10544.7278 4388.8476 21661.8029 13796.3982 17700.2178 7496.2524 9100.7926 9014.1306 6631.0685 13939.3779 380774727 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 86699.0632 32580.6448 267041.977 8421.309 8911.827 15089.8132 10479.8972 23932.0176 11672.1493 13545.8322 60276.9591 49491.3731 234788.2461 9360.8471 19092.503 25541.9031 24301.1254 24301.1254 18664.2902 68632.0605 56716.6287 15048.8682 62606.9843 21069.3249 12239.4317 25131.5614 23915.0401 43696.1047 47928.7512 44201.2134 26170.7443 10172.4501 23671.7854 16284.9464 5877.1301 11893.8592 15074631 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 22139.9494 5641.6309 3572.5166 4009.0694 5067.4154 5078.6513 97244.9941 23827.976 192812.1359 9033.3283 9973.3431 21511.2842 11170.9807 11170.9807 4065.5752 24034.6049 9674.0346 13415.026 7962.162 7937.1286 4209.5272 8666.9017 9799.1198 8803.09 48743.6828 10145.8792 11449.2609 5964.0854 10913.343 39824.0084 6301.6092 11071.1108 284017609 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 7550.8083 2499.5521 3139.2729 58181.4138 3422.1219 8284.818 4745.9073 4229.9344 89964.3369 2208.8043 2921.4363 10333.5842 2809.2751 3528.3951 4740.7299 3623.0332 62825547 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7423.8926 11237.1856 6110.8735 6255.6381 3957.9962 4582.5744 4936.4518 4484.2832 4959.1306 109788.3333 7050.7519 16419.4855 9893.7148 3593.8355 3593.8355 16197.0341 13866.3286 7337.7614 6836.9931 5666.6773 9674.885 2097.4872 3146.5607 16924.0871 3956.5127 16793.1269 5492.1037 12487.6116 4035.4207 3973.8506 4119.5465 5718.29 6653.3497 46205208 mer Metal Homeostasis Mercury Detoxification Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 13070.8329 10565.9423 9835.4924 35854.4759 11918.3941 6975.2045 12831.0879 9542.7423 22110.9438 261127.8981 12648.5887 14868.5337 71809.5647 6877.47 6877.47 19153.207 18113.1755 8893.2627 12133.9464 25831.5765 85776.5906 8650.9243 10274.2251 69576.5558 31772.8471 74814.8095 19338.2995 21035.4596 85131.507 27663.0738 17189.3983 21509.8344 16457.4779 294054161 cysI Sulfur Other NA Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 7323.3368 4616.5982 23420.5648 2368.0219 3807.8982 2052.6475 5777.6161 10814.9079 4858.5017 4026.24005 21677.7506 21677.7506 5542.0294 6615.37715 4878.0639 9721.7552 6183.4611 38872.6787 2983.9141 3290.6456 8068.9401 2163.246 9882.3275 7210.9024 6979.05955 4910.54865 6295.405 3896.1175 6177.84055 359764890 poba Organic Remediation Aromatics Aromatic carboxylic acid Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 101768.5033 15926.6807 3065.1312 3682.5002 49404.9333 3413.3794 88123.3453 3990.3716 5412.2703 8202.4454 4582.3798 4582.3798 13316.6319 5840.3681 5231.6985 16684.329 4262.7927 7391.226 2597.1348 7176.5755 11066.7851 2314.8054 4773.2161 2548.1579 353200717 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 4132.3361 24812.3549 4876.3247 4969.3898 5690.4884 12863.2513 21397.4707 4869.568 4869.568 35377.545 6057.6765 5242.9319 17955.3076 4745.5123 20944.3819 14797.0835 3304.6514 9999.0774 5434.9456 2213.149 5706.5076 7395.8639 3304.6459 28185.5401 403722988 tfda Organic Remediation Aromatics Chlorinated aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 8934.1995 6738.8368 21549.2334 4075.5412 4438.3619 7760.2167 6974.2315 117114.7408 7656.6669 12280.5674 8382.7404 8122.4093 8122.4093 5149.6168 24084.6887 10174.4318 20602.3608 13130.035 6828.6206 3934.4311 5715.4704 11791.6388 10260.4845 18750.9039 11690.6168 13512.7701 4192.9319 5465.7386 7846.3878 7024.0545 5942.148 379059153 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 12555.0486 944615.6672 4851.4553 5779.9706 21015.2939 6631.0749 26725.8087 19367.168 43364.3849 27145.8266 416158.9405 27822.2231 7166.91 10669.7274 14074.3624 14074.3624 6734.2912 30559.3862 8984.9304 22501.5107 13383.0701 26329.4785 4991.4946 11118.6938 10147.0424 12066.9739 19930.4593 21573.705 30401.6629 4695.4793 19534.3452 27663.5131 5468.1002 19683.8381 344690068 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4748.4001 6733.3657 9655.742 6226.6004 3115.9263 70212.8183 1970.3689 6011.2055 10284.5448 2495.2202 309541.5233 7224.3079 24792.6585 4126.7574 7001.7525 7001.7525 4669.9188 15675.4761 7095.907 6181.2141 6319.9762 11085.6643 7235.5953 5872.7629 7960.8654 55824.9536 12891.9304 10193.7266 9514.6017 4720.3482 6907.134 6970.9798 18568.161 8282.6241 339502567 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 11168.2855 4406.5098 4525.0511 258511727 chitinase Carbon Cycling Carbon degradation Chitin Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 40327.0334 11649.5294 6702.6432 8575.8821 15587.6652 11432.1564 16657.158 19415.9047 36763.7583 13177.5421 309509.5883 10572.4183 17983.9649 57137.9326 18546.9929 18546.9929 7703.6623 31825.0033 11364.4744 23720.1634 18368.5218 13421.455 10319.8127 16869.8779 13277.9255 21385.605 32055.408 19406.2318 128514.7035 10033.8214 24573.6137 46558.7334 11817.5426 11390.7529 299775070 pula Carbon Cycling Carbon degradation Starch Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 11927.7542 6883.3295 7703.4715 50741.9144 17523.2354 7105.7241 10662.0789 4523.4259 12435.3677 10747.8164 7259.5709 351126.9672 13317.3939 21502.7877 29239.5278 14034.4422 14034.4422 10254.4801 27776.9869 20996.8637 6387.72 19224.9152 18343.4352 5241.4737 12830.9968 25761.8248 7029.5207 24627.4203 14901.5057 50024.6579 17397.3138 16372.3354 14496.6891 6695.2426 19607.1112 124260397 soxY Sulfur Sulfur Oxidation NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 15347.1648 9262.5018 9138.2204 9475.0548 14453.1194 9582.3709 6160.6901 7513.901 13233.1825 7205.7023 152295.6159 11948.6356 17890.8588 9399.5919 7876.4411 7876.4411 8987.7396 20533.2059 15215.4217 18135.8027 13886.5311 12876.7754 6867.3934 6727.9347 16636.2093 7319.4525 27968.2899 8936.1945 13475.4199 23059.4651 9660.3676 10211.8314 8199.3957 26242.0845 346922018 dehh109 Organic Remediation Chlorinated solvents NA Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 35177.7232 41066.085 27853.3148 177472.8683 31675.0259 6084.5733 25138.2935 9836.9716 13394.9164 14206.3961 28536.1519 288681.1895 15512.9122 43700.623 20837.2766 20480.4417 20480.4417 14597.8062 31147.7824 41392.4428 6831.694 7225.2205 20687.1826 7082.3578 29779.9571 39263.082 27654.0258 306289.8913 175841.9927 48316.5268 33697.6866 19188.6447 18383.7915 8405.6923 9067.5391 163962154 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. 12F04 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8409.6412 5608.2544 9343.9386 15446.765 5386.7699 4881.5921 10415.2934 12176.8526 7406.3726 7621.4236 140622.5759 10971.7546 7145.7161 8263.8751 4756.9915 4756.9915 3744.1912 12190.3634 8497.3736 7110.216 13093.9627 3922.2094 2221.8374 3773.742 8929.578 4449.4358 13050.1426 12324.3931 10018.8406 5838.5066 4988.2838 6341.3405 17934.2927 8047.2042 206592155 mdld Organic Remediation Aromatics Other aromatics Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 12409.1101 50694.4068 22864.0229 18026.2243 104680.6378 5164.9345 9921.9382 10668.5302 9409.1919 9287.8059 80899.4255 10625.5297 247791.339 14692.6097 15146.1843 13223.0697 13938.5583 13938.5583 6012.3527 18511.67 12260.7223 6532.8054 132889.8862 17713.0992 11086.5052 8619.8823 35560.2403 7308.1805 30738.2454 24143.2513 24007.0973 18151.6125 9204.9839 14292.9848 12603.5865 37935.7041 54016003 urec Nitrogen Ammonification NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 186083.0704 40326.8432 324462.6644 109603.69 70626.0255 367118.931 148347.5029 272382.4195 108779.0692 228574.2932 177049.6602 95557.831 3544324.9584 124329.4766 133575.5305 242723.613 193474.6166 193474.6166 60545.2793 188647.4824 124371.9117 514566.3304 318962.2659 129947.1973 71709.3268 67366.255 119270.8824 137927.7301 387240.1829 85563.0998 258472.5254 75127.2187 106576.8342 174032.8226 120144.7338 131491.5476 151561416 arsc Metal Homeostasis Arsenic Detoxification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 4783.9254 4237.0611 13932.1548 2608.651 2045.648 4201.0445 4925.7028 3110.8642 76608.9221 4196.7599 4959.7761 7885.7576 2551.6184 11074.2461 5645.5999 5887.4955 6973.3055 2845.9604 3723.6852 9325.6189 3604.3682 8922.046 8937.1556 7378.887 5135.6169 4944.211 4367.2367 2449.6012 18617.3957 355378609 terc Metal Homeostasis Tellurium Detoxification Selenomonas noxia F0398 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 72895.2671 17357.251 50011.8962 15510.2476 15113.8836 6376.1069 11864.7774 58877.6619 11883.8204 38796.4367 29358.7714 41341.29 230267.3737 40888.627 27522.2531 41293.6207 40913.402 40913.402 29548.8236 70105.1662 19019.2013 52697.7657 69323.3584 33702.9398 31696.3929 21518.4958 29197.8807 75236.943 62063.8986 27511.293 37279.2629 54132.9728 24002.7455 23825.2198 21814.1848 19369.5529 166368281 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 336201.7015 19302.3591 247909.3054 48935.2202 64638.1531 23318.1633 149958.885 177121.8762 196887.1827 211465.6646 185765.7015 130088.345 1899305.5075 77680.3403 127606.8336 236657.8145 120572.2669 120572.2669 92031.3898 176419.412 123961.3454 146410.3501 168900.2765 417098.8957 84675.8471 244083.0229 75354.252 104095.5016 315236.3699 118663.9957 114972.9374 90753.8547 99798.3539 102124.2203 108396.8977 137762.0728 118424502 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20917.7393 6835.5824 11595.3675 6706.8868 7040.399 1931.0369 37605.4663 153166.1874 6810.5146 133026.6584 7846.8967 15884.2624 9715.6246 3392.4086 3392.4086 4543.2884 22132.2819 9167.7954 9042.2207 119268.5707 8724.8831 3875.6469 8219.0938 12429.0104 11298.7377 18068.6457 5278.0688 11626.6002 4122.7759 12774.2999 6960.4054 13128.4087 250319.6207 193222992 TIM Carbon Cycling Carbon fixation Calvin cycle Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 15362.7651 64236.0903 5683.8303 14567.1877 5008.059 8729.9352 7610.4405 9332.3933 13289.0468 34293.6303 134871.9404 12001.4396 11859.9482 8974.1522 6004.1378 6004.1378 8846.4343 16418.2791 10133.4815 16582.6258 16506.5056 15331.8093 7017.3111 5545.3608 18443.2014 7924.4693 32386.1096 9142.4802 13460.7321 6954.846 7965.5975 9920.3145 32325.7579 18622.0593 261366636 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7370.9316 9561.4022 4242.1714 2497.2975 2497.2975 5166.6175 4226.9384 4670.9974 2308.1714 5504.247 353675637 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 67427.1171 105343.2638 33721.4228 22297.5977 29602.3246 16941.356 16195.9098 67804.8402 136192.4477 51960.1598 52997.9058 41071.5259 671700.3709 39417.9253 48509.5992 31905.9409 53910.4864 53910.4864 30449.3572 68156.8894 42784.4515 246725.8436 100707.5548 46899.3222 42224.9291 26191.7063 41804.693 25406.9925 95896.6227 88502.9175 55221.9452 29247.174 53201.5943 45424.2709 26717.4164 168325.1784 196232607 urec Nitrogen Ammonification NA Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 160692.175 112590.7222 34910.8691 24609.4968 101936.5696 267545.1005 23442.2583 83311.3959 25152.4655 85210.1758 65553.1224 47969.6039 2107575.3681 65564.6849 106951.3437 110348.2975 67057.9289 67057.9289 29894.1985 66929.9038 43762.649 50170.0266 78548.2204 128494.1988 37183.2387 59613.5126 87884.4262 109271.4242 91183.5742 100221.0049 128626.7469 50941.3384 35552.3077 90627.1938 72181.4631 46302.9384 284029942 linb Organic Remediation Pesticides related compound NA Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 63726.4107 13291.7341 41646.1589 23662.2485 14711.3456 39565.9323 27367.4144 16762.9617 70049.6816 32126.0808 25542.9902 436753.3635 38971.0277 193064.3425 113765.8904 58255.0159 58255.0159 42654.0963 61912.28 41933.407 27075.6981 121839.5452 56157.7677 34779.6713 25315.7881 44263.8794 30126.8413 206159.1734 61306.1412 45518.5721 22842.1893 71243.3989 62568.8859 21652.3774 44444.5184 91688346 aln Organic Remediation Others NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6423.0327 16009.6921 58516.2761 3251.3666 5066.2376 4464.9534 19152.662 7536.5234 8806.6644 14465.1725 26798.158 26798.158 3235.1914 15691.2739 83748.4488 5223.5339 11489.5341 7187.2849 41641.863 12761.6202 6562.0667 85316.9192 32169.3511 10335.5477 8393.0435 29048.295 9367.192 7297.0434 4499.1043 23965.447 27657620 chnb Organic Remediation Other Hydrocarbons NA Arthrobacter sp. BP2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3944.2929 1740.6264 2512.8581 384082734 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13168.957 117425.2309 16571.3202 7325.7337 15409.6134 4160.2559 7810.8414 14082.1616 5472.4873 12769.0774 11963.1628 65057.4369 6201.4976 9440.2349 10971.4012 52210.1201 52210.1201 8300.5388 15880.3737 8330.0923 15269.1227 6953.89 12383.477 9442.6507 6103.3381 15107.1186 5120.9638 43039.9723 16574.2503 9329.1781 4768.8995 8316.596 9073.5052 9892.9392 11488.6776 375082999 arsc Metal Homeostasis Arsenic Detoxification Thermococcus litoralis DSM 5473 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus litoralis; 8100.043 3023.4303 3602.1115 13948.9526 5086.3682 28420.6265 72368.769 5321.1134 3266.5907 66036.4817 2407.5126 2407.5126 3939.9045 6891.2358 3454.9628 6839.2761 6514.1921 7579.1658 2611.7116 3962.0874 7227.2647 8230.8432 15094.7989 10468.9761 1816.202 4161.447 3557.3905 6829.4266 356413784 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 8888.5007 8739.2672 12359.1184 5909.5256 7696.1422 74157.3916 10710.6748 10833.4871 9597.3018 171149.3535 15348.9324 14789.631 14117.2017 9281.7453 9281.7453 10851.8325 13648.8708 11234.0754 21773.514 23198.5388 7238.7468 4878.9124 8112.9795 28105.608 51559.6279 23769.3223 31102.5497 13396.3265 9569.7228 7726.2745 21040.4831 17856.6763 17803.9798 161898386 phytase Phosphorus Phytic acid hydrolysis NA Buttiauxella sp. GC21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 20857.2992 23277.8431 27862.9433 12204.0617 7062.3398 8079.2165 24464.9354 14531.6508 21123.6659 13949.9699 15762.5586 14395.6399 251262.0735 14909.5194 18051.8634 11415.9986 9057.2816 9057.2816 10965.9791 27598.0847 14239.4311 16809.0199 14515.5816 23196.812 6708.1798 10468.2735 18014.3807 9383.3833 37272.7165 7977.6082 24037.6273 9877.0796 9501.5028 15486.7063 8869.112 21621.4946 167950118 TIM Carbon Cycling Carbon fixation Calvin cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 36997.9466 7060.8399 25243.5939 23453.401 15398.7523 24494.5216 4150.6705 2776.6917 109753.6204 5587.1398 4134.8286 3554.5028 3554.5028 4661.1867 11561.5221 6225.6352 4839.7909 6654.2286 7415.2459 2684.661 4560.1924 11562.1238 3334.8838 9668.2893 5010.5536 6371.7417 3283.0273 4048.2735 11332.8003 3389.5763 9624.3938 296120037 cmci Organic Remediation Aromatics Other aromatics Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 36645.7219 18624.0418 8430.9302 22787.3932 47654.1196 9017.891 27791.7097 13326.3124 39734.0838 78600.5871 21531.1339 232221.9797 18459.1359 16055.8202 36175.8066 33849.2416 33849.2416 67648.3611 37873.5174 27201.7645 14989.3043 178864.2522 33065.4195 18690.7913 25284.9522 50606.7193 42515.463 919615.4895 20532.7585 44220.6329 21166.1027 27802.6587 43332.6009 27575.8178 59895.859 329956755 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 9130.1212 4454.0947 6048.1108 7746.9181 6357.8768 383190.9001 7362.7163 16456.6735 4664.6844 128738.1404 11813.3485 8693.76 10059.6694 3191.2676 3191.2676 5227.9047 14276.7864 42529.3986 6441.2759 11606.186 13573.063 5650.9849 5156.5633 13904.1096 5062.4758 21590.5724 8703.1288 16421.1615 4910.8328 8794.3888 8563.9562 8394.1251 10920.9918 268313375 glucoamylase Carbon Cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 143832.866 15929.4188 70611.4322 47978.8001 76039.1851 17127.965 18983.5173 57093.0391 20592.5276 66104.0899 72873.0058 36403.034 686790.4859 73568.8889 163230.5198 106649.2506 81591.7804 81591.7804 50141.0676 93181.2564 57185.1418 97628.42 102045.3877 29816.4533 20178.7527 56280.3286 63052.8112 28597.8125 106674.6322 68076.2123 82299.3117 15558.7246 38492.6459 53095.1161 28853.8409 53771.189 365891348 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 78576.1313 578627.6034 4625.4482 7982.0134 8393.7104 138744.1902 66202.51 33460.578 52665.145 195444.9559 40217.7433 1057003.1014 66382.7573 423884.4921 108438.0654 56452.5013 56452.5013 35516.5421 49974.6888 34871.0896 339381.8452 75719.667 119181.4993 38035.7913 83072.7251 28867.2418 60783.9731 197814.7778 74393.316 63889.3454 75344.282 46719.592 46927.3847 76051.9088 33211.7225 378402490 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 4737.8901 7716.8688 3086.3178 6917.3766 4244.848 4159.181 2406.9395 2660680 catechol_b Organic Remediation Aromatics Other aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 28548.7595 8617.835 410591.9066 25694.753 9319.4278 58291.2717 7925.3921 15326.0979 10141.1313 54906.9019 14703.8601 313026.9876 29225.3632 16504.3197 16645.1761 15161.7138 15161.7138 9646.6952 25981.4725 26422.1024 17878.3391 15543.7471 32636.6306 19398.465 13555.5985 66744.3021 17720.2292 42596.9629 10573.1938 58347.3945 9752.9283 12071.7696 41600.9375 91344.3847 61658.4207 325543141 pme Carbon Cycling Carbon degradation Pectin Xanthomonas perforans 91-118 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas perforans; 18277.0683 13272.6187 17140.364 652102.7013 6588.9367 8879.3455 6033.0679 5253.9662 9548.8123 7904.3469 14969.2037 316353.1201 12681.5918 58508.0215 12698.9892 10703.3482 10703.3482 12493.8632 17055.6971 11443.056 10571.0453 10974.1979 9635.9909 6976.0454 18711.2811 22239.456 34004.1924 28480.0847 67043.4758 16367.396 8546.3166 9038.0661 104955.982 6530.3607 14358.8994 323366500 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 23914.9345 5101.9579 9867.8373 5107.5637 9774.0975 4066.4087 8688.3779 7649.582 104115.0445 8105.3973 12784.3122 8161.8922 7413.4275 7413.4275 3587.792 21462.4937 7851.7953 4277.1607 21087.5108 10117.0421 7397.4154 9450.8088 12283.4068 12794.1269 15024.0479 23781.9193 15209.6194 16753.6876 5349.8024 10937.7106 4937.2303 9296.7779 170777715 ppx Phosphorus Polyphosphate degradation NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 246855.318 25522.3564 669164.1831 442253.6322 241103.184 99212.9446 152844.3629 161265.2375 334692.0283 187156.6997 537200.0088 129232.5028 4434766.5325 181510.0151 599616.7277 170497.1916 196276.4481 196276.4481 81730.0704 160647.6879 135709.8361 203258.8816 171621.5356 426647.9922 92158.175 99013.2811 191639.0091 83905.9429 236070.2055 208541.3024 192650.077 150009.9678 145148.5253 152235.5303 73957.6842 216750.4762 240015478 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8563.9759 11415.5595 18853.4499 5663.8669 3256.428 5278.2649 4606.6053 11992.6522 85807.2997 5115.6905 6856.5228 3218.1058 3218.1058 3524.539 15111.5507 37195.8245 6761.4943 7182.1578 9850.0713 5122.5385 4137.9204 9430.4577 4540.3269 15818.6701 75782.7642 8995.6008 5144.8503 6235.0315 4183.6995 4018.5366 11208.4066 365896511 b_lactamase Virulence Antibiotic resistance Degradation Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7351.9863 23886.8466 44352.4625 12015.5648 15622.0209 3389.7012 12607.1673 7455.4555 133057.6455 6190.6698 6706.1151 12987.2164 4219.8228 4219.8228 3023.0657 21318.2514 9765.3855 4252.8082 12569.6018 5411.5911 6688.1407 14490.6675 11928.661 3880.7984 24574.3953 15203.3918 10675.0166 20016.1139 5901.7218 4941.9902 3274.8666 32015.6546 298369875 nosz Nitrogen Denitrification NA Neisseria sp. oral taxon 014 str. F0314 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 5015.1652 3983.0624 6775.7637 4999.8055 2157.9683 4433.043 6941.309 2377.4661 61342.9856 4753.3911 4412.9692 3977.1466 2476.6361 7314.0541 6830.7969 3697.7123 4969.5468 2448.9964 3210.6795 9040.8801 3033.9985 10590.8406 4197.4682 7173.978 2443.1044 3979.0028 4445.59 4284.4564 8617.7771 381194567 SoxB Sulfur Sulfur Oxidation NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 13195.0439 19608.8139 8759.2933 9707.1387 6584.0689 18685.6095 9206.8887 35310.8282 94325.9026 7633.5635 6101.9652 8935.9455 17620.4032 17620.4032 45791.8226 13603.3542 13780.1365 9578.6455 10875.2682 4488.6171 19463.9398 11189.2619 4795.4694 48447.1681 10706.4795 214069.3574 4511.9291 10689.4459 7927.9214 6478.7034 11644.1384 334687096 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 19496.3444 13653.2749 49952.4176 7521.1161 4977.5688 5005.152 6651.576 225701.6984 8042.9009 6264.4894 13905.7178 30980.5004 30980.5004 3487.1876 16460.8447 8086.0012 5176.6645 4499.2648 7119.4315 80369.1768 7925.7598 15788.0054 11586.2697 19658.2869 4214.7267 10457.5054 6120.2405 365182863 soxY Sulfur Sulfur Oxidation NA Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 71723.8461 18046.3673 50419.5578 27406.1546 5421.9772 22715.4057 33979.0946 23353.6126 31506.2571 37931.7299 31068.1326 685600.3843 57447.2189 43504.392 29305.7378 28773.5907 28773.5907 34714.961 88146.2894 53829.6383 130802.8914 58620.4485 60595.5696 29296.1098 43318.2244 61299.0595 32765.641 97384.4446 23799.2198 72301.579 32221.723 62565.3698 32905.8514 48438.7251 70871.3297 145606552 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 15176.8806 11547.878 22770.6398 49678.2338 336238.9601 9585.1278 9202.4136 8228.1613 13089.6865 16292.3061 8943.0041 251269.1754 20942.442 18716.1571 11127.2911 13758.9828 13758.9828 13714.992 28468.1501 17482.6828 15662.7799 30592.3366 16400.4291 11340.2259 10000.1122 27145.2191 14412.673 30203.4101 19518.6684 24702.5585 9595.0621 14019.1479 18121.7531 9382.3255 57919.4249 338756784 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 18303.7389 11877.4342 8229.1666 12061.7038 16003.9139 5259.627 8772.9946 9060.7295 8703.4922 249171.052 7304.2939 11623.4204 17331.8413 25602.0839 25602.0839 9014.8584 20256.183 11097.0983 7869.1428 14696.9535 20956.7684 8415.7854 8941.1445 8837.21 25665.6787 31496.9903 19166.9705 15850.2494 36233.3326 10034.3007 16994.6667 8254.6168 18796.0334 218173571 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8233.8004 11825.3533 12612.8429 11235.8591 5799.6717 6410.1667 8374.2721 7075.536 5218.4127 165448.103 6375.3244 6701.2891 5448.3476 4469.0542 4469.0542 5221.4407 11170.0284 9765.1229 19078.8585 11553.5877 15272.3957 3661.5798 4393.9659 9389.0021 7692.9145 14432.3353 6831.0592 9979.7838 5631.1486 6999.7052 9311.1356 5366.2294 13833.3857 374987753 linb Organic Remediation Pesticides related compound NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 104436.949 18651.974 16477.8797 16075.6021 12417.1453 8411.0974 9574.34 14947.0886 29698.6362 19472.7642 248715.0658 19312.3098 26564.2743 21057.5766 15149.2284 15149.2284 8295.0446 20150.0723 10780.898 17140.5646 34780.3402 19443.2363 6436.8287 14650.696 23031.8004 12483.9768 9444.415 14565.5288 23671.49 9811.3453 10570.0436 21165.7631 8285.5019 23061.521 359819538 catechol Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 34705.4039 198233.1009 14924.0845 13670.4514 5817.696 10208.0119 55918.177 13440.3864 17119.5799 19675.6614 23272.7959 549357.4077 13735.2033 69192.8294 33936.6484 21992.0485 21992.0485 18363.0643 43427.9129 13066.4845 46783.0516 21833.0634 22921.8154 25674.314 34114.196 26363.386 14709.4526 140407.6868 22856.4407 33557.2606 13980.0229 30477.8702 26414.1503 31769.896 140973.1614 209486061 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6642.6018 10278.7504 5961.6772 4902.2349 5143.2589 8414.0158 6072.1895 20284.542 8490.9173 129806.4844 10072.8889 20464.5997 6094.433 9672.4013 9672.4013 6768.2961 18288.169 11294 18544.7188 13665.5073 11974.8894 5939.111 10262.6707 8037.9305 8507.7668 21379.969 11279.0663 19239.0603 17625.6357 10413.6381 11676.052 27708.7314 363714341 ppx Phosphorus Polyphosphate degradation NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 9922.0492 12595.8519 43999.1055 18258.2123 16766.2383 18417.8305 5773.4238 8342.8002 7866.2966 7290.4366 10051.7594 6845.5828 153219.1439 9403.3839 9113.5959 14313.8756 11555.1966 11555.1966 4252.0044 19280.0013 15096.6359 6833.4524 29592.5684 7423.3312 4015.2774 7772.885 17991.0885 6521.9955 31996.7949 13274.3227 15137.9812 6808.3871 8795.5782 11019.7274 6956.0221 8894.5752 344338068 cellobiase Carbon Cycling Carbon degradation Cellulose Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 83165.4984 11419.7164 12718.9598 172515.8797 4821.5839 9088.6516 5710.6332 10292.7979 10100.0087 20444.2217 221532.4371 17334.0749 13617.9027 8836.7322 17858.482 17858.482 10055.8141 23832.9021 14866.2021 10088.8504 16971.3082 12980.9227 6441.7254 10618.4223 21524.0901 5777.7266 40528.9602 24182.514 23507.5649 6201.2771 22000.9505 18428.7355 7193.8387 16044.5406 345855488 merb Metal Homeostasis Mercury Detoxification Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 161037.1996 21664.2652 16991.3377 24725.3199 86028.3048 22871.358 19361.7067 22775.2585 52038.6843 55629.9545 34872.9617 57664.8167 568749.9735 45094.937 51764.4792 493223.0643 70909.0848 70909.0848 40540.0769 78176.4845 24102.2982 20694.5056 80304.1822 29447.5223 31348.9285 23908.998 79395.039 42310.5297 73491.5334 135614.09 52974.0306 68644.3873 67534.0639 38419.846 17680.3884 209252.5473 385182739 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6092.5681 4262.5349 14531.4374 3392.722 27475.772 29021.891 7256.0246 142460.499 9618.022 9476.8043 9139.65 11575.2626 11575.2626 6674.0529 16248.7891 8648.2685 8102.1774 7641.9916 6999.8197 4855.3989 9551.9012 15070.968 10619.3797 29920.3163 11383.6893 9828.5454 8999.1881 26640.1846 8412.7085 7944.8068 11082.4705 283481909 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 490912.4301 5853.1963 38027.1683 22657.3565 9416.9785 17541.1434 10335.5973 13536.814 21266.5527 13379.3461 131900.0892 15954.8673 12374.1117 12285.778 31709.178 31709.178 7380.3464 389558.0439 14025.4456 66378.7078 17044.119 14803.3211 7968.7288 18292.5366 26488.1899 30272.6923 49913.416 23053.627 31105.5135 12990.8117 21387.6132 17602.69 9930.6182 16937.4409 116334542 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 5841.7199 18538.4915 7786.28 2500.005 37095.001 9274.2675 4873.6022 3660.0774 5058.9576 5557.3567 8709.4028 10685.1235 10685.1235 3360.8409 13726.0386 7322.9255 20303.1808 14206.7223 4925.9143 36141.5858 11986.8056 17615.9507 19401.2908 2952.8215 11090.0794 10830.2924 3176.1654 3529.8154 7268.6153 2765.9572 6711.4469 74057302 ara Carbon Cycling Carbon degradation Hemicellulose Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 20389.1531 11313.7693 5265.7036 7568.7973 6969.8639 6216.7376 8166.6212 5908.5621 9855.3095 46244.2536 7952.8659 322150.6265 8527.8324 12812.261 14513.0757 9723.88 9723.88 7703.895 14743.9902 10613.1076 110575.3459 14714.1949 11980.891 6356.4394 12373.6848 8636.3795 5727.9542 36336.1731 14267.0276 18800.5754 28637.6927 8840.4163 13793.5295 4345.6224 23017.4256 377533790 cysJ Sulfur Reduction NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 12968.1389 8995.955 19474.6842 29087.6069 9096.7735 4761.1484 11723.0928 4843.1628 10678.6547 11149.1292 7740.671 237910.1485 13600.714 15277.9937 14862.9454 9059.0301 9059.0301 8743.1956 19520.3756 15326.6791 12853.6662 13098.5597 17564.344 8515.7949 9656.7008 19298.4624 7946.4603 38469.8417 22522.5859 19564.458 7964.2586 11587.6353 12731.5475 6665.2107 18548.9273 70831139 gdh Nitrogen Ammonification NA Trypanosoma brucei brucei strain 927/4 GUTat10.1 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma brucei; 71370.2067 56416.6786 11977.4348 11148.4268 229489.0064 29550.3613 10027.1634 30105.5928 10221.0211 41755.8674 46842.309 14423.236 510984.3249 198216.1401 94262.9892 36623.8297 27699.8489 27699.8489 20460.4835 27456.3969 29834.2829 17285.385 31619.0081 18306.3796 8219.1023 16088.3828 28896.5135 13334.4033 48747.4836 69602.9935 23200.7375 9203.695 17596.156 24370.4748 32495.4268 28169.3521 50982456 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6812.6875 4061.9353 6908.8901 3728.3283 3939.1864 1935.8321 3751.4 5644.0175 2538.3783 125209.4355 4592.9193 4584.9216 2398.0154 2398.0154 4338.2222 6968.6003 6199.0923 6257.895 7103.4509 9637.3962 4424.9138 3183.3373 11175.1043 3398.8465 12340.6714 7158.0356 8142.5298 4031.1529 3781.2465 4679.0036 3736.0085 10241.988 374581437 dsra Sulfur sulfite reduction NA Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 6747.1374 187165.3165 22334.4113 10487.9272 2543.852 5939.4993 2775.2884 4443.1791 2295.2704 3921.5891 3296.824 3920.021 3966.5677 7055.2416 5701.8893 19200.5762 4405.7985 4435.2515 6836.4476 3220.8344 6159.4902 8080.5129 5135.1639 6439.7795 3612.333 3058.084 6147.3797 2320.684 300539677 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 8126.7295 8541.5542 5783.4942 1976.3435 4957.3915 69378.3197 3904.6664 3049.3247 7989.0849 3795.2183 5653.0325 2279.081 7189.727 7457.4341 5734.7692 5117.6501 3063.9758 4183.1662 3544.7336 4786.8826 227102854 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 15322.1406 8163.3427 11347.9828 25211.1959 16218.0627 4951.3608 9346.597 5589.9682 7164.3173 12152.0084 6620.9536 317398.9034 9784.0269 13988.365 12417.0495 14106.0679 14106.0679 6475.8388 18322.9989 10212.9087 8272.7656 8428.0013 11540.1855 5231.0477 6667.8932 16488.3391 4731.3901 16926.8133 14881.5001 13165.906 7283.1581 5261.72 7037.3498 7175.3811 8459.0885 290962191 pme Carbon Cycling Carbon degradation Pectin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 43350.4287 6905.583 2846.4128 4201.5079 6508.411 6941.2413 13533.5988 158316.373 21916.0537 15846.0336 11155.9375 3955.5694 3955.5694 5259.0974 59181.3754 16034.4931 24137.2712 9286.019 5448.1788 12847.6431 8223.9389 19069.9593 7644.5026 21783.9668 6257.8296 17664.3391 5703.3998 7224.0617 14614.5705 3133.1321 12851.2565 374368416 xlnd Organic Remediation Aromatics Other aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 10761.1937 10116.0755 9070.6996 17232.5221 40011.8697 4692.7341 5470.2365 7371.8583 4591.799 62913.7094 2701.5701 2701.5701 4516.9068 15566.3291 4749.9816 4490.6349 14375.5061 5039.745 4570.1132 8256.734 7531.9023 12249.017 7696.8456 12537.658 4435.9808 7029.1166 6666.758 4183.2284 9900.9223 261281938 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4817.0683 52858.5761 3878.3073 3393.9832 4778.9308 4525.2546 7342.9575 98079.3456 16725.5633 22385.7312 8814.4848 13781.1223 13781.1223 7006.5823 11724.1286 4352.894 7415.5855 4873.1272 5159.9339 10974.0473 4005.4739 36160.2795 6024.5573 1924.9496 5901.9374 17536.2465 3695.5546 12103.6722 325532301 terc Metal Homeostasis Tellurium Detoxification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 204903.6118 460188.2551 184618.6248 1289350.1736 222522.739 19765.3836 87002.1397 178463.485 111580.3493 140524.7689 135735.7901 177247.8734 6444648.5889 166040.5715 186647.2158 205647.8892 132635.8863 132635.8863 264252.8891 238320.2746 111676.5634 181057.3746 160059.2787 161900.543 128673.3156 114939.0105 290360.6192 157557.4291 329491.4361 232982.9377 190943.2515 90869.6468 152792.5488 255031.9327 93821.3113 248301.1737 56680518 pcag Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 74659.3511 91189.3785 156039.6894 34129.4105 10812.4125 30460.8568 61672.7757 34703.6043 25067.683 58809.9154 58762.1342 379142.631 51982.4448 58779.4643 143892.8091 219927.2767 219927.2767 32332.7072 89190.0832 53142.0591 123252.9622 77445.6627 39374.5256 75521.9128 49996.665 120016.4956 62821.2501 213259.6983 63759.0405 105560.1649 36381.0963 58984.1915 82253.6063 169288.6576 55518.6539 296319 urec Nitrogen Ammonification NA Yersinia enterocolitica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 5448.467 9943.634 5378.3813 3501.9097 3008.2543 6477.1968 9891.2065 5109.024 136246.298 6383.4718 7703.1673 6206.5815 4724.4263 4724.4263 4383.7919 9271.707 8827.3294 4595.8316 14757.3688 9156.4552 3724.8976 11090.2996 4364.3831 12660.2956 11273.2 11706.7427 4256.8484 4114.8363 7162.317 4733.733 8518.7745 388244931 norb Nitrogen Denitrification NA Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 6627.609 12240.7591 9845.0259 4338.035 322460.1712 5373.9144 3336.3129 16242.0892 10240.8811 230643.5412 5728.611 26358.9171 5246.5556 3840.7392 3840.7392 2970.049 9156.1796 28211.5672 6060.9415 2723.3654 4219.4588 6365.7364 175071.2423 27959.9832 12346.4436 9332.5598 3609.8202 7469.641 5281.3217 7049.8954 13722.0261 308231247 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5171.7669 5262.1768 2893.3643 3478.4007 6502.5141 7697.2357 81828.8842 4972.8612 4880.0286 2931.9197 2931.9197 5674.7176 9415.9985 6067.7053 6957.064 10799.5643 9056.781 3721.2461 3409.0276 8520.6277 3985.1992 14454.177 5724.7996 8313.2054 3158.2748 3557.9713 4818.7276 4471.2663 10011.3433 157804845 APS_AprB Sulfur adenylylsulfate reductase NA Rhabdochromatium marinum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rhabdochromatium; 6396.8622 3768.6455 45848.6995 4098.417 7150.4046 3654.0621 3064.385 1945.3752 23381.1893 394771852 terc Metal Homeostasis Tellurium Detoxification Actinomyces georgiae F0490 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces georgiae; 34384.8416 105413.8733 9831.5447 97135.9723 131392.5815 4270.4958 64542.9021 2256.1714 13302.7547 15923.4946 9675.063 111450.5393 22764.8474 30708.1924 22599.5854 23990.0536 23990.0536 14365.8347 39508.6503 62135.155 7165.775 14265.3461 19887.336 130064.6237 10306.2104 93025.8875 58750.0371 86958.8831 31634.2744 20856.5108 36041.4367 23996.7843 290472024 pcag Organic Remediation Aromatics Other aromatics Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 8545.1314 21788.8031 4063.9461 6305.031 5119.892 4094.9712 8053.8585 3671.6653 5469.1425 97170.6556 6150.9917 10251.2308 7075.3289 6739.2529 6739.2529 4025.8932 87138.1311 4272.9971 6306.8429 4578.3221 5034.1867 5109.6585 12676.845 3630.1442 29070.4714 14027.2285 10054.7241 3656.3743 4247.5784 11134.6434 46130.0011 4509.4541 364578331 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Cardiobacterium valvarum F0432 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 5899.3258 5081.3569 4819.9391 5731.0228 10280.0937 7516.9817 5599.1162 138089.722 7908.0381 12754.0549 141582.3868 8526.6715 13951.9147 6733.6787 12350.7333 12350.7333 6830.0698 15536.7006 15685.8514 8597.4827 19288.6004 11388.2845 4129.9715 8248.4031 16410.1176 5065.8174 20918.1563 12805.1831 17095.0294 3893.4072 6294.0627 11887.6736 4755.3228 9277.5573 383651631 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 10766.4827 9169.7432 141897.9484 229473017 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 15623.4205 8187.5791 7753.2058 18933.0696 10961.2116 7715.8651 54508.0929 16653.4775 8560.8985 323234.3888 18158.207 9604.709 14160.7487 14913.1643 14913.1643 11618.3946 20410.4022 13841.8367 13635.5504 37649.9998 12806.0313 6331.0977 7478.9835 16292.4732 6533.6616 25727.1086 16873.2932 20477.4971 5372.8901 8565.0504 13748.5819 7736.089 20588.7075 258544992 cysI Sulfur Other NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 118447.1696 34159.6134 21993.359 5298.1292 7360.7281 7805.0376 10060.4686 8806.3743 44903.5664 233580.2107 13419.336 9778.2564 7223.5938 9929.0665 9929.0665 7533.947 13522.694 9670.7081 12555.1504 30219.9838 21012.7541 3817.6736 6647.1557 15489.2631 8104.5557 15105.7654 20962.9303 15102.899 7369.6116 6827.7058 14873.1644 7350.5557 10486.1802 30269557 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 13563.8796 4101.0667 5064.6013 8724.4114 4582.4825 104674.7815 12215.2547 5586.8018 7641.8099 7641.8099 5422.2553 7156.0329 4425.8513 3936.76 8566.9399 6380.8123 2881.0857 19082.2769 13064.5682 10138.3886 4676.1375 14392.8151 3481.4757 5129.0143 4101.7772 2808.3611 118462966 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 59369.4698 12681.4846 108438.6194 120965.9649 72204.0093 10159.5957 17214.7389 48429.5659 42050.9236 40569.3893 42443.8798 67629.0819 2073385.6134 87014.0246 115105.538 91218.5971 113057.4533 113057.4533 36145.7843 70001.334 37743.7014 234605.654 77017.52 46734.3722 37171.981 208016.1266 279602.2119 136877.4891 110697.3786 48017.6236 115985.1522 19729.8266 55334.484 46856.2433 29449.2105 46538.4297 375093951 xylj Organic Remediation Aromatics BTEX and related aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 358555.7035 52604.1503 124860.7312 1171008.7602 395047.0539 39303.7613 288571.0734 229312.3834 133494.9595 245241.3487 520755.7872 228756.6302 5392719.8997 307383.7722 310049.299 447342.5338 239809.7112 239809.7112 334174.0443 460556.4143 166516.1426 171139.2697 412447.3599 1996930.3034 221996.4071 347064.0472 475748.1824 210042.0384 479114.3545 698107.5529 374094.3689 166644.8231 293068.6946 370120.8213 238627.1446 325532.8744 379656828 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 37339.2225 15212.9929 7011.0702 22650.6336 7217.1143 220503.3189 7810.5608 47997.2998 31797.636 56016.7437 235780.9659 20442.3056 22667.5153 18154.7849 12825.8236 12825.8236 12003.2294 30039.5361 47904.6795 12401.5843 162690.9093 15605.5716 38275.4004 15541.3125 34322.2766 22348.8673 27959.6453 27128.515 31271.2637 10144.5361 17402.0131 20709.5346 211673.1749 21048.0379 114707735 amie Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 16878.6802 22132.773 18135.2026 10332.7147 20087.6953 6218.9735 12773.1545 14143.2975 28274.8411 10180.3275 12942.8167 9011.6909 251092.2518 12803.9585 31806.3269 17499.6072 5638.4398 5638.4398 7415.6911 21109.2771 14306.3019 12052.6318 36132.299 12496.0142 5147.2153 7749.1661 18724.7023 6936.3438 24857.3938 6660.9632 57401.0924 9785.5533 9065.0803 7915.6265 8552.855 16309.6542 99078028 tfda Organic Remediation Aromatics Chlorinated aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7162.2147 5006.6407 5720.3965 10967.5116 3672.8533 6036.5143 9679.8542 6254.4102 128090.8926 7884.8149 6468.3326 21130.0551 21130.0551 4354.7907 10734.4358 8417.6928 10680.742 7679.0167 11267.689 3556.2295 4298.8473 10833.7171 3336.2759 13784.3484 6107.5671 8705.0847 4147.2305 6621.0712 5761.7101 22619.7489 11529.3631 332671742 ara Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 346760.001 72892.616 162730.7473 464054.127 84579.5638 38293.9686 160857.2784 151730.6262 97971.3745 114089.4997 183340.3924 144430.5383 3311689.6795 129754.7468 145057.9331 481741.7446 244888.1066 244888.1066 177768.3903 205564.5098 81948.792 183858.0119 281097.7804 313729.4422 109092.1571 135770.3781 130047.1315 123921.1626 244140.531 109936.8354 256228.3989 268224.3368 143755.8751 130095.8234 126656.7198 781988.3368 392379483 arylest Organic Remediation Aromatics Other aromatics Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 7041.4968 14698.4931 5213.9643 8275.27 5134.9304 4387.6041 3335.1044 8159.581 16008.6023 5722.406 249047.4384 23848.0303 8061.7512 6100.11 4347.3858 4347.3858 4899.0716 15054.834 6837.3815 8127.9987 8477.3851 12302.8404 14088.418 4370.7186 9421.529 5110.8198 18550.4348 13807.7246 9250.5601 6127.4757 6833.4368 6058.5969 5501.0208 8836.2563 144901049 urec Nitrogen Ammonification NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 12467.6153 32342.7835 10304.7423 7839.267 9091.7451 5186.672 9047.1739 14081.97 7023.716 215818.087 12543.5163 9349.592 7038.0905 6199.8012 6199.8012 8510.6836 18158.2071 13662.7273 9016.4337 13634.9771 15559.829 16405.4112 18321.4601 14047.5379 30123.1065 25671.8758 17102.9755 22922.9794 7996.1959 10049.5952 9743.0489 6878.5991 21531.4818 359793747 dehh109 Organic Remediation Chlorinated solvents NA Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 125333.1016 29524.7957 319060.2504 81863.5118 225235.5663 57175.7291 118682.6122 513143.5651 201536.8184 127050.954 176535.9777 231110.9395 1475408.1493 189661.453 184006.6288 234241.2507 135828.4445 135828.4445 106050.5737 126013.3917 72309.1467 104357.0053 237073.4223 118179.4645 99098.9204 131143.4683 163308.4406 59785.0128 331238.8947 106667.1705 125716.0348 63267.3259 124342.5264 91362.868 101287.1632 205028.7968 83575287 phn Organic Remediation Herbicides related compound NA Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 5721.432 11861.4453 2368.8564 1993.265 1993.265 6125.2567 6038.8678 2006.7532 2734.6797 5091.3969 84495000 ppx Phosphorus Polyphosphate degradation NA Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 84204.713 35987.0278 67393.7179 59441.2702 65831.9931 28745.3631 20856.144 18984.6357 25800.3596 50047.7064 19956.7882 810372.8609 41364.5698 31988.1461 46724.3513 40113.4016 40113.4016 24109.6093 50687.8406 21621.1951 38202.6546 66319.8736 26410.9174 13485.5816 30411.0707 68332.1105 38361.9219 105415.4757 43068.747 74972.6061 23523.9885 31935.7375 58540.0905 28545.6958 39750.5759 51870942 endochitinase Carbon Cycling Carbon degradation Chitin Rhodothermus marinus superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus; 345432.9489 225876.8765 243698.9827 1319042.7663 340197.9633 287389.1996 208821.0319 682572.1668 214997.7971 293147.3492 251030.5545 261866.2762 6201787.7763 248411.144 360581.6333 709890.3246 361015.7048 361015.7048 193614.4879 255080.9791 167107.3713 274279.6593 325751.8846 280545.6564 158195.3844 141097.0679 388434.1968 188676.26 534522.4222 151799.3849 343163.1662 200648.3079 173592.2798 201813.4211 175502.3352 390105.1476 117647746 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 8843.5775 8300.874 6544.8389 12729.9105 8582.2125 6413.6783 7839.0974 7279.2301 20650.6146 8562.3229 145205.3616 7144.838 26160.0696 8327.6058 6028.4137 6028.4137 7188.3876 19013.8235 15321.0547 9818.2002 13031.1058 21929.9355 7222.7346 5839.6922 15378.1163 8239.6739 24202.6945 14348.4907 17516.1887 7481.6542 7372.2549 10697.6631 20747.8747 11602.3942 373102618 SoxC Sulfur Sulfur Oxidation NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 225342.5986 16803.511 422541.2769 367097.5805 118174.3374 37523.6924 96009.6552 238343.8698 74201.8466 136067.2325 123208.5866 106087.8034 1229957.4266 108556.1977 173354.5082 506039.7085 168196.0477 168196.0477 274622.0624 227520.5739 103820.49 175004.9424 366665.2052 94899.9628 89646.9853 125406.8749 137481.5551 146118.8898 332518.3173 164090.3991 218999.8665 144838.8763 251906.4232 237170.94 82754.2038 96898.5 193226136 badi Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 46507.4651 21665.7375 103685.7789 39665.0317 258643.3938 14269.991 54953.9082 50494.455 33727.6819 51317.3366 121184.7411 51829.3362 910059.1163 56016.7509 68998.7744 96963.0418 68211.2692 68211.2692 69585.8221 125949.8182 66829.1071 203596.3944 105917.5799 80049.6036 346470.0409 48560.9438 86066.5912 32142.3173 134851.7574 69587.2187 98476.7683 38516.544 89422.2833 95669.9408 51339.1257 222834.2048 378549588 amyA Carbon Cycling Carbon degradation Starch Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 8047.5077 7441.8607 14544.6956 8701.9689 178727.4188 16035.1503 5055.633 7864.87 10762.4084 4400.7782 116910.904 174819.9519 9573.6706 5625.612 5022.9762 5022.9762 17741.4191 20951.4597 12090.7088 17337.3364 9989.5473 11535.9152 6759.0491 5809.0269 13630.2059 4435.0054 23044.3042 12362.4186 17135.8959 7018.4114 8265.6427 99779.7253 4341.6448 15680.805 357635430 mer Metal Homeostasis Mercury Detoxification Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8180.0027 12796.8919 3710.2425 8463.0423 7519.1061 7257.6248 3616.272 16665.9266 2833.0057 3410.5765 5588.9202 1677.8545 169117858 mer Metal Homeostasis Mercury Detoxification uncultured organism 4759.927 17373.8131 2968.7654 3124.3729 3306.0252 2515.5653 2515.5653 6175.2914 3207.0653 8872.0403 2286.1734 5130.1945 1881.901 2686.4346 2629.1971 383781557 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 31716.4099 11356.4191 8088.4773 7854.6751 7646.585 8874.3219 22411.5129 7712.0884 14450.5649 28064.4988 16719.8031 239967.3275 36804.4153 12945.1093 30277.162 18143.129 18143.129 13505.3577 27007.285 17153.3332 30309.8967 52229.6709 38419.5753 9194.8582 13249.3113 20537.7706 10288.2439 35258.706 24490.6031 21953.8269 9838.9007 11152.2439 31498.3027 10256.5416 134426.0153 148550997 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 66720.9372 50660.5485 3351.9329 2381.702 231374.9121 10373.1734 7224.9387 5943.3691 3428.2488 10716.8547 3770.8636 1754.0126 2183.4202 310796134 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 16500.0375 8695.7579 8458.7551 36108.6249 10044.0561 4678.7181 14218.0416 2228.0585 5987.108 14218.2692 18717.46 200710.4684 22826.027 12108.2436 9243.0019 11987.0085 11987.0085 5509.1417 16681.8235 9708.2012 510035.4712 8437.3592 12468.7012 9405.79 11086.8133 18682.8085 6486.7156 27902.229 10903.9231 17358.61 4756.9162 9654.9024 15779.4186 6475.4544 10948.4025 334343066 camdcab Carbon Cycling Carbon degradation Camphor Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 24660.0254 4465.5694 10362.4866 5075.4507 4650.1303 7104.0785 3345.0873 4496.7836 43635.2623 5386.3398 1115732.1122 5213.1357 6634.2407 22020.3931 5833.2247 5833.2247 4879.817 18814.9723 14672.8451 5950.3556 11214.0968 11189.7605 10473.5713 7318.8224 12457.2619 9947.1447 27282.7218 15213.1967 9083.0808 6647.5761 8140.4059 4563.2668 14550.9546 6718.1887 299796315 merb Metal Homeostasis Mercury Detoxification Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 60736.2113 17491.7074 327281.4836 42865.2774 44052.746 22874.4668 68726.1028 106509.2996 40289.6579 58166.1552 59626.4365 34814.1214 940129.4325 58214.3312 87126.6298 222603.6932 41458.314 41458.314 36942.5791 65379.0619 117847.3415 69840.6537 42689.6289 102114.5487 26589.7106 24309.2156 78298.46 38879.8207 117129.6579 33497.2827 53515.6627 42511.4295 73728.395 74690.7536 34773.5226 59455.0844 37726855 dsra Sulfur sulfite reduction NA uncultured prokaryote 47813.7649 6389.4716 18604.2059 359385.0422 61306.4492 35838.5934 41533.4479 5885.2934 32690.3972 37551.3465 16025.4272 1493895.4278 37069.1742 61506.6105 116972.9549 91024.9409 91024.9409 29323.2437 62700.8055 66915.4372 8211.9067 34405.9088 25405.1057 18714.282 42567.219 120091.1691 23294.2131 164385.0637 123367.3616 182882.9545 23502.3337 25011.5145 42608.7228 7834.0328 9708.6649 151636 vana Carbon Cycling Carbon degradation Vanillin/Lignin superkingdom:Bacteria;phylum:Proteobacteria; 19859.446 10338.6736 10968.1651 19703.3657 9934.9817 8513.643 19867.3277 17188.7771 42286.6463 18838.3838 10024.6994 210480.4924 18152.8929 51074.0512 21225.2954 16878.6383 16878.6383 16337.2789 28252.2586 16323.6089 18085.8292 28902.0687 23905.5097 14065.366 12061.7329 26838.4933 24216.1837 34028.86 25475.4714 24609.4821 11273.6055 18798.3939 13854.3207 34686.2191 25566.6057 223954281 mannanase Carbon Cycling Carbon degradation Hemicellulose Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5680.3981 8900.0685 8700.9002 12173.7084 3474.3083 5166.9985 7092.4232 3452.2531 178316.0879 6815.0982 9146.2605 4791.1172 4628.4348 4628.4348 9370.1208 11425.611 6858.1253 6209.5985 9767.5466 11498.8627 4093.1798 8070.2786 3847.9702 25433.5433 4175.5632 9207.4425 4324.9483 5431.991 6505.1605 4337.7355 8463.0531 78212641 nitrilase Organic Remediation Aromatics Other aromatics Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 15077.6062 22511.3837 5639.6822 14756.0864 23371.718 16404.6626 7578.9322 7163.328 4080.9583 10550.5141 8093.7676 10553.7461 243763.7961 9303.9282 11110.4054 9057.1203 5890.2514 5890.2514 6829.5387 28231.2922 17815.6728 11510.94 17744.7843 131542.3732 6963.0487 5001.2003 17072.9683 10616.6224 22622.1709 11980.1192 19735.1999 7851.4999 7735.9691 94254.3769 7603.1141 15275.7964 21219419 dehh Organic Remediation Chlorinated solvents NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 47850.2345 13541.9189 9150.6181 7412.3621 5399.7972 395909.4354 3090.4824 25386.1777 8591.5216 60895.6115 209801.8525 5824.7181 8032.5792 8209.2431 6099.3147 6099.3147 86192.9648 22583.9528 11186.1517 9319.563 37546.1231 12956.4822 4786.6654 6872.1034 10285.1187 3367.3726 9714.5592 5651.7642 70095.39 8353.982 14267.447 10968.1521 10588.9534 9982.2821 385856557 ppk Phosphorus Polyphosphate synthesis NA Neisseria meningitidis NZ-05/33 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 24295.9286 14022.9574 12226.6569 30708.1091 23778.7569 19575.507 12937.2638 14737.3078 34460.1583 17217.4613 15269.6963 241601.217 18558.3273 14917.0295 10968.4906 10621.926 10621.926 13656.245 26089.6373 16598.3949 15693.4701 18699.3229 19531.9404 10542.4376 10427.5619 18510.0703 19492.7467 36386.295 42959.0886 19399.649 9863.5351 14740.1552 41122.2257 11238.8987 21264.5961 118703443 oxdb Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 11022.7561 7578.64 8448.741 3848.6637 4751.668 4120.2973 2733.7541 2733.7541 3471.594 51863.2914 6305.2301 4325.9591 3081.9873 2197.6886 3979.1317 6535.8181 5707.3432 5620.1346 217400191 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 5055.9673 8365.853 9105.6455 89056.687 5462.3559 7073.0825 4171.065 204925.1916 155923.8424 4990.9826 3607.5508 3607.5508 6780.3581 3633.9265 2858.5923 3326.0276 13313.3433 8032.4642 3462.0846 4068.2876 223961799 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 4071.0081 182440090 urec Nitrogen Ammonification NA Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 105437.6211 11257.1649 45616.8025 13271.157 15340.9342 30003.7688 22380.9508 9418.0504 13774.7972 93292.4958 157464.3058 36419.7697 10091.049 21379.0282 18684.2908 18684.2908 13066.3997 26215.0294 15014.5772 17424.0802 78061.715 136586.5292 27410.752 13923.5695 15334.0494 12728.5369 235462.913 52374.3287 28985.4847 14233.0632 26487.5352 33430.1837 22660.6003 77056.2974 182415523 mannanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 18373.6404 9962.8041 4804.1801 7004.6708 12167.0997 138929.8248 18615.3399 11142.4755 7710.2297 10527.5216 16272.1525 16255.1883 214159.8313 11169.5633 80758.4074 14973.2045 18842.7818 18842.7818 21610.8411 31011.2094 14486.2654 10654.9398 33569.1074 13969.5493 13861.8246 33499.8984 13730.5085 53041.435 91679.689 24752.4029 28414.7991 10204.2927 11802.5686 23331.9631 14233.3375 18269.3681 212636099 linb Organic Remediation Pesticides related compound NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 9551.9842 4738.3859 9192.8791 8120.7151 2968.6915 6583.1006 12236.1387 10538.616 206261.1962 7682.059 11925.0411 6978.0312 5319.171 5319.171 5839.1426 14519.4512 6381.558 11256.5772 30038.6731 6855.6053 5881.8402 6534.8768 9581.8304 4198.5875 24261.6792 6912.208 12884.7192 4740.234 6245.5132 8558.3674 7399.4232 8307.6139 325538912 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 343493.2278 51540.0152 309855.4402 171937.4047 252045.1307 91089.228 583363.9608 259872.3774 182446.9216 174683.4812 197884.7163 188424.4019 4334531.1094 250634.5355 352646.4888 1475540.5565 245743.9838 245743.9838 134034.9466 223012.8584 152395.0895 395357.2893 263086.8076 103341.7429 144750.4829 195609.1937 190123.4603 162096.1086 391896.6583 122977.4826 297034.3341 132935.6398 165938.1595 192740.2087 152465.6673 227410.1576 50542660 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 12406.4673 7346.3101 8404.8329 9160.8911 6422.5502 12346.1406 11705.0264 142842.0897 9382.6067 8186.33 14215.1111 12132.5778 12132.5778 2828.2738 15950.8108 12323.4831 6544.5495 7762.8726 123175.1244 4022.5653 15921.5651 22951.5962 10546.2792 20615.0747 14800.505 11782.8681 4135.3554 10569.1779 7690.0123 12174.4985 14341.6668 381201525 terc Metal Homeostasis Tellurium Detoxification Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 42613.5867 12860.0098 20960.9236 116834.1486 23083.4597 25685.3106 50402.7578 22061.1977 26826.5921 130579.569 32307.3059 579287.4765 29039.1984 32052.767 45182.5698 24250.6787 24250.6787 30841.785 63557.2537 65559.574 39407.4509 31476.2421 46809.3547 110904.8543 58231.7502 47707.1456 29924.672 94970.031 49999.7695 58288.288 20664.8901 32956.1983 37082.2005 79374.6564 49469.363 209401634 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9751.1179 13881.1759 11104.0401 12008.322 5347.9418 7798.598 5821.1723 5120.2844 8743.6447 13403.0602 8251.346 129638.7479 10760.3652 26204.9566 9131.5781 4905.1321 4905.1321 7165.2183 25539.1188 13289.1956 30326.2641 27680.3759 9921.0401 9761.4676 9851.8699 12656.8294 18386.3913 32551.8006 17532.9779 35704.9569 4508.669 9624.2359 11408.0442 8410.8896 22266.2823 323273649 ppx Phosphorus Polyphosphate degradation NA Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 5572.5883 450160.9824 22373.9232 6762.191 12982.2965 3146.1983 8676.0504 6275.3889 14293.6656 4000.1926 6523.1742 5570.6932 8615.1529 3825.0872 3825.0872 8160.1912 7521.8837 4344.2312 7817.7583 6238.0646 3523.0861 3849.8935 10219.5502 2628.8099 17535.5965 6373.3294 11257.9173 3735.8375 4438.0403 5362.5505 4756.6859 9428.1576 330403320 b_lactamase Virulence Antibiotic resistance Degradation Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 6965.077 12729.9468 5720.2269 10037.5728 6384.47 7072.4863 2963.5345 6759.5985 5358.7639 4332.4122 131241.8565 4089.5078 6269.2955 4105.8834 3383.6725 3383.6725 4248.1722 11782.4658 8218.2149 4528.6984 6180.8644 9111.7404 4033.6634 3414.2948 9181.1538 3978.5139 14980.1114 6115.2579 8370.2475 4012.5088 5267.9058 6323.688 4587.5786 6826.0192 221725862 TIM Carbon Cycling Carbon fixation Calvin cycle Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 14269.4387 19269.5147 15399.7236 6370.3888 4266.7858 25429.0159 11002.526 8256.3026 22276.2814 9924.1217 78543.2264 17880.6205 10894.6925 105999.3615 6532.4561 6532.4561 18953.0813 31887.236 9841.9624 12103.1218 15419.5961 24571.6205 6318.7726 13144.4055 22979.4319 13554.0147 24106.3673 158286.1269 12928.7551 8585.4019 11076.051 13330.3275 54030.7233 17012.9015 229321585 xylc Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7662.2022 4902.6461 3025.4079 3119.9963 4385.5757 5452.9359 5465.4254 3712.9574 2224.639 2224.639 3977.018 12549.7079 5907.1847 86311.3588 49146.3203 3751.2475 2939.1475 3448.3804 9035.3162 2542.6239 9450.4287 6739.6793 2344.9441 4244.8396 3203.99 2751.9891 7419.778 183176475 alkk Organic Remediation Others NA Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 181870.572 16095.4211 14931.0232 32581.5105 13829.0927 52494.9422 33089.6648 38189.2559 30139.8432 19069.3312 39055.0154 47506.7012 1134054.3802 39609.8137 24940.0921 86001.7177 49294.4782 49294.4782 14029.96 48983.4746 18587.7909 50742.2338 54265.8127 52802.9045 16028.1479 18753.4021 42307.5462 43807.6503 126020.0171 45217.5437 53221.5175 27113.5571 71557.5814 34448.0246 53438.8255 38302.851 355576444 amyA Carbon Cycling Carbon degradation Starch Olsenella sp. oral taxon 809 str. F0356 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 6210.1579 4771.184 4826.0531 17789.0831 3217.9942 1624390.8977 5354.9256 4158.783 8343.8594 6344.1873 6344.1873 3881.474 11284.8061 6330.7737 4293.9645 47817.7371 9306.7552 4929.0431 5405.5868 8802.9236 4625.2262 12117.9203 23606.548 13027.8705 6064.763 6158.5522 6395.469 8194.1285 10559.6187 113526540 mdld Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7114.3506 9090.7023 12891.415 3659.1583 6773.6124 2679.9823 101990.8741 5419.0135 3045.4998 3045.4998 3439.537 6691.4617 4516.4977 5182.0316 5380.1888 10776.1601 5013.355 6606.2587 4166.8395 4861.4242 5181.9979 4298.2869 6677.9904 163745832 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9599.7273 37940.8846 16051.105 4693.777 4252.02 12599.7921 6431.6583 6248.0945 7595.1012 105820.5154 6282.9749 8040.7329 5419.1487 7452.5432 7452.5432 3815.061 20137.2554 7663.7513 5823.7616 9346.3074 9539.6378 2669.4643 4530.7668 14274.4568 4675.7907 22068.8749 11831.5178 11666.3499 3835.5162 7983.8794 9206.262 3652.9381 21545.9947 340346860 amyA Carbon Cycling Carbon degradation Starch Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 15833.7609 16365.8561 14352.0643 3378.5766 6432.0454 12209.7993 110729.202 12705.0348 7960.19855 19994.6167 3079.8881 19355.4154 5884.6149 18333.8144 9991.0358 6044.4262 4122.27735 7500.075 19524.4161 19768.0536 8488.8451 6279.62605 10761.0919 5811.6557 11555.5453 365894173 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3709.5345 3062.2807 2999.7183 3439.2411 10872.4689 10872.4689 3248.0363 3098.4602 3831.4261 5910.6684 1940.832 3013.657 3489.5404 2600.4759 322395124 mer Metal Homeostasis Mercury Detoxification Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 5780.6372 5392.4582 21106.6979 18881.8892 4921.6938 5988.1709 4938.1854 789473.4109 9496.2162 90897.6519 21467.963 9627.7404 8659.9553 24324.9055 24324.9055 5924.2353 13798.8663 9878.5243 5071.9412 6150.6188 14869.1471 4202.7652 5651.0027 21541.6733 5715.3672 22624.4213 13435.207 15088.373 7066.0608 6614.9996 4233.5086 4187.3802 5768.5717 329934952 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 124860.9693 142356.0852 1836997.9123 12666.0555 8401.8261 9828.6414 15809.2723 8044.1095 15058.7785 17786.5136 13657.7414 477787.5387 18853.679 147044.8495 38154.2166 13118.6575 13118.6575 13509.1356 34646.8953 19031.5987 19063.7927 31379.5867 30229.5393 11702.8847 12815.3508 25041.2904 9194.9841 42871.0023 29596.7232 36616.259 11364.3794 27807.8592 18496.4101 12926.5508 26302.4788 28542633 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5733.5838 5526.771 5184.752 5686.3501 5798.2129 7614.706 5941.3438 129722.2452 8551.6152 9266.6318 5007.0275 5007.0275 7992.3852 15054.0102 7146.2811 9020.6125 9589.6845 10811.939 30569.5396 4523.4768 52354.0538 2871.0379 24174.5376 11165.409 10912.7776 4888.8406 6163.0106 5602.9989 4061.5333 8381.2244 119962058 urec Nitrogen Ammonification NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 23903.9489 46233.2988 11270.883 18646.6221 234063.6412 10813.4394 20562.3251 11358.9988 30240.8826 11470.2943 271217.4409 15887.7623 17051.3653 6814.0731 16720.0141 16720.0141 35555.8387 25074.0681 15810.1907 13718.9339 14801.4267 18567.0777 11295.9436 9091.8034 19453.8513 7364.4186 29138.681 14149.8283 18968.9566 9546.8689 9410.2478 18111.7492 43540.3473 15775.613 164456128 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 77736.3769 2189158.8873 47830.1398 143377.8526 26872.4996 25212.9929 90673.1727 29947.432 36132.5005 88455.6914 41490.1175 3505183.028 212331.7492 33781.5925 33844.1205 91176.0132 91176.0132 69455.7165 194653.1496 35469.3171 44943.0781 102619.0587 53138.8756 56219.7127 51400.8829 88067.5229 91907.1515 140247.4719 128801.3912 90664.9406 52661.622 43841.0071 210840.8947 36053.3953 412747.1474 14039125 gdh Nitrogen Ammonification NA Thermococcus waiotapuensis superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 19931.0857 34881.243 5069.532 15955.774 2342.3648 17652.6531 1929.9732 11159.0122 17482.5807 22228.2548 180065.3058 20559.6147 17311.3167 44561.2583 54297.7485 54297.7485 5016.0327 122713.8053 16681.6923 10786.9106 21870.7189 10706.167 8625.8298 11186.1444 13813.3473 10844.188 29559.5479 14433.0025 25726.9833 4911.7651 17367.9435 16494.3689 8095.9427 12934.8739 111073773 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4455.0992 3836.4334 4677.678 3873.6228 4971.8216 4971.8216 2860.4746 6124.8691 2798.6055 5133.5705 82678.003 7504.6695 140713899 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 36787.4051 14885.6345 11270.8393 22018.4416 6919.4433 6913.0706 10248.9535 8919.759 66700.1055 21820.8254 14950.1462 315676.1058 33943.3116 23735.3896 12766.7057 9624.7016 9624.7016 11126.0566 24885.535 16924.84 16547.7743 18552.5025 21780.6642 12960.7523 9866.7707 17680.7918 10033.2606 28980.7972 17722.1186 21480.6444 9224.3421 11890.3155 11671.4051 7626.1281 18702.4225 114799430 SoxA Sulfur Sulfur Oxidation NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 43894.9883 25065.7841 7162.4744 24971.3801 6315.1297 5368.1614 29282.57 12685.2679 12392.945 44530.1846 67656.2698 366886.2837 21569.4903 35252.4254 35025.268 42505.7164 42505.7164 15981.6419 404131.5424 16277.841 68309.4886 33071.6881 50377.6334 31596.7477 31993.6197 23399.234 23104.5739 373966.1381 95117.6021 53655.9795 16182.3246 51609.5637 52437.3924 37452.8521 46955.5583 51491440 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 151274.3647 6163.3522 12995.1975 68091.3468 7417.4856 21852.2139 16547.5389 10660.3225 21879.651 72846.1798 25121.3509 2371780.6546 84268.6943 24465.9841 38041.2905 30818.59 30818.59 15713.7977 42161.718 18208.0714 28159.2507 36580.2982 18097.2716 27397.7765 27958.3013 26202.3176 20628.5817 69182.6615 48719.1083 46870.8407 47520.9314 35510.9011 36608.48 25678.5639 54040.4953 197782166 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 20184.547 1533171.0919 25890.2982 60558.2669 29643.3331 24651.1484 31281.4132 10948.4208 28094.5407 32021.6326 139182.7403 832503.5383 77058.8259 36566.3584 31937.1718 24870.4287 24870.4287 18969.4747 44679.0586 27659.1672 26987.2323 73983.2019 42191.0972 19737.7237 22590.1208 78567.5985 25064.7667 66539.47 37409.3744 209635.6999 16889.2421 24573.59 31994.7694 17834.6681 38309.7803 537500 endoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 6674.5276 2554.13865 2526.531 2447.0539 3924.81465 5393.94385 3728.4708 123209.85435 4274.3884 2079.4285 2079.4285 3317.9253 10189.53095 7031.46515 5730.12855 6090.7995 3680.1867 3320.1283 6515.83555 2729.9949 13534.008 9399.9247 2991.58825 3577.95465 3210.5197 2118.8893 7366.4479 219862122 mer Metal Homeostasis Mercury Detoxification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 14584.8507 7308.1464 11980.0009 3948.2561 21945.9445 2344.8256 13315.191 18136.8811 4370.368 178551.8891 9057.6911 11910.2864 33689.7347 8838.5017 8838.5017 9344.5437 14077.9289 6998.1427 6665.285 13151.1747 7835.63 5012.4841 6712.8108 18009.6292 19053.3198 18459.3751 8196.7231 17612.7397 4941.2402 6905.5778 6137.2699 2708.2613 8482.7927 187477094 arsc Metal Homeostasis Arsenic Detoxification Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 10740.3736 11209.3055 8779.5352 14216.7752 7692.9434 3292.3191 7613.5443 12540.2917 7694.7794 181138.6746 10223.5062 52048.2544 5447.1173 5570.1211 5570.1211 7852.741 22155.1448 9355.4004 8917.3049 14564.7753 13456.5942 5573.2784 5123.6532 14177.954 6116.8838 22725.1598 17176.1939 15992.3415 5897.1544 8150.7865 7655.9989 8591.7502 7953.5024 146193124 ppk Phosphorus Polyphosphate synthesis NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12484.1859 4025.6658 9134.0656 4472.3042 9248.9524 2292.1539 4462.8986 11719.0369 204162.5911 7917.1587 7586.6331 13605.4277 18085.8122 18085.8122 3539.0883 10511.4405 5855.177 4478.4362 9076.7887 2942.9021 7013.8586 9794.1501 13172.6556 14285.7176 8606.1287 12448.6813 32874.9178 8073.6369 9983.4675 8649.2852 7642.2124 126703411 SoxV Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 34724.6124 10122.7938 1885.2726 4300.2527 3823.7651 4686.9715 578387.1871 4156.0046 5763.7075 2540.8239 2540.8239 2686.2743 7662.79 4352.2426 5762.4855 3108.6656 7984.0268 69700.4483 2887.1115 11932.83 6061.0645 2335.6421 4881.4122 3739.4214 5180.7987 284048017 chitinase Carbon Cycling Carbon degradation Chitin Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 7567.87 9738.4888 5930.41 3889.2944 2837.7945 7197.9225 12169.1379 4801.5105 127654.3045 8533.9668 6283.4393 5273.2532 2315.002 2315.002 5404.4869 11178.9799 7647.2318 5241.81 6451.2951 5698.5762 2997.2349 4419.412 10470.9318 3660.7414 15165.8001 7604.2854 10005.4771 4429.6077 7473.5879 4985.6042 3419.1189 6453.6521 27762476 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14743.9181 5277.386 15387.8249 4858.0136 3322.2632 9295.031 4762.5756 9566.1523 5712.3838 78045.7114 10962.3413 7287.4333 5510.1147 5404.5272 5404.5272 3459.5058 19004.5056 4598.4358 7621.94 6684.9214 6638.0093 3416.993 5407.9133 27512.8168 5586.1735 13021.0915 8118.1393 10988.68675 5591.1423 4768.2734 5121.9045 3220.4565 4511.8898 156063366 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 3804.1795 2945.7731 72625.8803 6491.5728 6075.578 6075.578 339727.4297 23750.928 4270.8856 4708.6546 2390.7092 11110.1652 3287.5756 5548.7444 18096.7171 9297.0501 114737563 limeh Carbon Cycling Carbon degradation Terpenes Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 5576.9687 3262.3838 3842.6298 2576.3439 5589.9174 5727.8165 3944.7293 121224.0227 7967.3476 8217.0425 2516.5955 2516.5955 14194.6148 184212.6561 7083.8631 5931.5211 5157.8622 2912.0153 4344.5934 12694.5997 3542.0623 19445.4534 530259.9041 8257.102 4357.2597 4614.6472 7479.0436 3447.0233 5566.3562 76803727 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6110.0041 5225.2926 7147.3383 5622.3088 6366.3007 2115.4321 18402.8919 3652.2592 6888.8069 119170.7183 6025.271 8182.953 9096.1991 34362.1322 34362.1322 2952.5236 12491.9192 5042.7127 3734.8553 4670.751 5314.4358 14487.5979 4069.9713 17374.9998 18346.693 19613.6113 4302.2559 5437.6895 9343.8903 5387.2195 328942102 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6208.2897 6856.3918 7324.2103 7604.3564 2988.0237 5329.7058 10778.9187 4695.4434 122167.594 8960.6464 10304.6595 9991.7029 4456.9889 4456.9889 4516.6571 13158.1686 12061.7313 6347.734 10712.3728 5949.0475 4401.5112 10792.1392 7316.4648 3426.4249 21216.7518 6769.3485 9191.1578 4585.6975 4468.8222 36464.7935 7239.3061 15059.4108 333481229 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 6254.9635 4229.4756 6584.7367 2699.6038 58053.8412 8778.5765 6360.9069 3268.6236 29852.9552 3080.7294 5335.0795 27376012 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5307.7782 7290.5646 18628.7845 6277.3994 3750.6769 6549.3721 4052.4195 7061.755 2542.3631 114471.3532 6293.5428 4641.464 7693.4405 4133.6113 4133.6113 4326.7915 10190.3511 16284.4774 4966.2475 7084.7966 9380.2167 3338.3143 9365.9425 3429.8204 13739.7175 8466.8966 8703.4465 6445.891 3797.4682 5715.9544 3940.5918 11568.7173 345112383 ppx Phosphorus Polyphosphate degradation NA Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 55877.1117 39565.1664 17199.4935 22730.3295 30478.9932 20670.7188 33222.7093 20949.2261 19346.6196 54252.9647 30584.2432 883181.2172 33838.4529 28469.2902 29233.8453 35150.2126 35150.2126 21004.2124 57147.6126 24000.312 26341.1161 43881.0013 28882.5339 15097.7614 19747.7194 28673.1715 44404.5761 57567.9556 27080.3489 42488.7306 10434.4936 17765.1105 24471.1897 14748.6614 39115.8658 347762020 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 4459.0696 11729.1432 5227.6993 2260.686 3555.7621 6527.2804 5244.8823 8717.383 4294.7547 4283.3355 261835109 arylest Organic Remediation Aromatics Other aromatics Halothiobacillus neapolitanus c2 9823.3286 8176.1447 10256.9076 8536.6551 12050.5796 5429.0853 13872.5143 14003.6716 7591.7209 111769.2572 10196.7736 9593.8871 22444.08 14916.5881 14916.5881 4627.4843 11074.3789 10216.0749 11105.5919 47589.1608 5488.1343 7634.765 9586.2003 8308.5732 3925.6985 48358.9356 18357.4195 16225.2514 9597.2711 12299.4391 12159.1166 9811.3199 21147.3649 338740065 narg Nitrogen Denitrification NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 4621.7637 13590.6338 53621.2221 3245.9974 4382.6173 2435.0536 64519.6813 7023.1988 4239.6038 3190.2161 3190.2161 2748.2706 8100.1809 6120.2976 5898.1603 3004.5735 5820.8948 5492.1578 5566.6841 2440.5425 3483.2807 2779.276 297552875 ppx Phosphorus Polyphosphate degradation NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 429435.0147 171812.8672 213894.6153 662310.6552 464627.1219 908479.5138 521562.5194 686566.8153 291688.8269 227471.3446 364069.0147 279009.726 9287020.1597 386885.3061 491548.1266 1205557.688 288812.2862 288812.2862 157249.1888 247369.5361 210830.5668 536134.0737 267236.2271 396108.5774 212316.7529 145176.6918 269039.5318 206558.4974 489048.6884 305739.2729 278983.2703 125143.258 214876.1581 230708.4393 154288.7088 336622.1527 373564657 Sir Sulfur sulfite reduction NA Methylobacterium extorquens DSM 13060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 8334.871 5627.7982 6134.4479 4069.9477 4407.1342 2367.172 4119.8129 8417.3964 4755.011 117422.5878 6314.9822 7396.879 4496.2826 3089.85 3089.85 4813.7423 11330.3324 5562.5928 6326.4535 11378.8897 8956.0283 4314.088 4423.6549 5818.8815 3981.255 9046.447 4167.8145 9234.4261 3462.3299 6253.944 6215.2843 3428.263 7433.7349 162449760 RgaE Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 12089.7426 12365.9834 7393.3838 8146.7845 2884.3976 4911.2391 23726.5451 5105.002 19807.9823 7038.5847 101950.9137 10679.5552 6106.0115 9577.041 5749.662 5749.662 10290.2166 11844.1652 9776.1329 66822.5832 10879.3569 8637.4111 4266.6412 6615.7169 12508.2165 3621.2629 9911.6911 11046.971 13770.0074 4933.0189 6245.5733 8216.8329 9784.7722 14988.6759 406822185 catechol_b Organic Remediation Aromatics Other aromatics Limnobacter sp. 2D3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 5407.9339 7006.6699 3282.8004 5471.5183 2546.0634 4366.816 4654.3259 107979.3812 6233.1532 3346.3364 12679.4556 3329.9186 8440.2355 3814.6633 5724.1798 4211.4927 6462.5008 2553.7257 2773.5571 6600.3294 2680.3338 10078.0707 8297.248 2762.5121 3716.4963 5044.1623 2116.5858 10988.7012 288868854 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 4894.9986 2341.3389 2266.7938 3643.6631 61424.217 3181.6211 5552.0218 3888.898 6289.2728 7662.0608 4710.359 2342.6398 2796.63 2003.1627 377816190 cysI Sulfur Other NA Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 4764.8302 5530.7688 13284.2901 3871.9275 3480.0608 6566.441 20524.7068 9936.5399 339697.3188 6456.3166 8877.9699 16234.1716 2550.6613 2550.6613 5097.0937 276245.3464 9211.6788 9882.7589 6687.722 5368.7795 2924.6858 3381.6675 14140.3234 3236.4172 9947.0157 6819.065 6246.0226 8524.0105 8921.7913 6416.3408 6390.3352 7933.9729 259170208 ppx Phosphorus Polyphosphate degradation NA Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 208098.6978 16009.3028 88334.0303 88514.6727 40890.7219 51318.2012 122281.9045 192086.5726 80625.0949 169325.386 130197.053 131040.0028 5729955.6122 85037.0136 124091.9451 188654.7486 164375.0233 164375.0233 89402.7292 240283.3627 85151.7703 126882.8455 164384.5066 105284.542 122018.1554 122131.0938 100744.4296 137202.4132 326068.3815 107085.2292 156635.7464 92687.3955 151853.7103 150926.437 190205.4451 148453.4879 118591562 PRK Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5627.7986 9535.2105 70706.398 2989.6208 19198.9548 8906.967 6260.6014 196548.7419 6480.0328 147350.051 10620.8709 9082.8912 5131.2703 3857.7955 3857.7955 4502.9066 34459.5913 10701.896 4090.4124 7994.9218 5088.4015 12936.7623 8944.6037 13210.5244 4691.7547 24733.9993 12976.0929 87272.9617 3412.5014 7001.1273 5003.1178 3274.8402 320334700 cda Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 9234.3155 10301.4452 8718.7972 109005.9259 13641.4978 8433.61 6324.0556 10723.3891 7224.9433 260493.5858 11984.725 13444.0099 30318.1611 17973.4821 17973.4821 10525.6882 20702.4139 12824.7696 9313.0624 100139.8072 7040.9774 2765.2976 16598.4845 32267.223 5656.8079 40747.4456 30774.1039 29772.0979 11744.7929 12140.1705 5490.6959 3638.1056 6849.029 91978771 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11008.4875 5745.8058 5205.2914 4617.2896 4929.3365 4938.3873 5040.7241 6910.6535 5452.6075 127352.6775 9532.8429 9392.3621 8702.1773 17186.426 17186.426 3711.6244 12411.3588 8440.2176 6444.0423 15125.4419 8183.8505 14350.1485 5674.432 6806.4345 7470.9769 16960.3852 11522.2042 7519.5067 2683.9058 6488.9824 3642.1193 3911.8237 8695.9527 94414962 catechol Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 118750.226 67933.3602 237393.9032 354729.0284 123169.8256 153240.4108 299888.0636 200329.4 82432.8343 231816.4527 120981.3545 92683.3955 13087318.1989 127706.7649 321665.49 1245090.9015 120341.084 120341.084 106796.444 136161.3346 85997.7598 873647.6389 87977.6998 155063.9093 92493.9432 81116.011 121362.3854 71285.3428 223196.2933 491389.3752 140742.1302 114809.0809 78147.5441 97086.3915 58507.0162 124633.8136 218760754 nifh Nitrogen Nitrogen fixation NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 5817.622 12957.3565 42913.4961 11350.0827 3129.0836 4348.8232 5505.1077 3068.9128 71828.2788 6057.3967 12259.346 19309.9756 3797.8005 3797.8005 7350.5304 14149.9485 5728.5866 9227.5185 13103.1834 5789.1038 4857.8453 5001.7189 8085.7765 6211.1383 19371.0174 15027.4342 7440.479 4928.8968 7430.5796 40745.9894 4505.5325 10664.2611 351683430 cysJ Sulfur Reduction NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 173978.5185 26452.7238 37800.2926 25149.3521 11908.7272 33131.1721 138153.3614 18993.0808 65303.0835 34013.7316 34632.3646 1218427.8331 41231.8986 45558.4695 58748.8519 48359.0866 48359.0866 38133.3451 120640.1898 34901.398 45280.212 44116.5704 30430.2812 24728.3661 27995.5358 46272.7834 132936.4592 84381.5747 67946.5501 57131.1548 41752.3049 37903.452 36479.7878 43232.733 52079.6663 365184122 oxdb Organic Remediation Aromatics Nitoaromatics Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 6566.5202 19793.6932 5121.5527 8587.4819 6075.7623 7795.3758 4190.5598 6290.1036 15734.658 5113.7897 357997.7547 10966.5114 12600.9011 11612.9105 7330.892 7330.892 5520.6107 14201.4262 7558.0714 15734.8401 7089.7962 37518.4725 4653.596 4299.7657 17471.1788 5835.2653 15106.4374 7759.3218 11938.8701 4519.8783 8682.8283 6275.9296 5301.3616 11024.7795 384136902 amyA Carbon Cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 6279.4319 6104.8841 7775.2972 9902.4216 3659.5618 3684.5627 6894.5296 7428.2765 4574.2702 78574.6658 15226.7937 7771.7375 20531.3466 2990.0324 2990.0324 3306.1957 7809.139 4989.6234 3589.54 6449.0989 5634.4241 2784.1118 3536.2822 10237.9168 3590.1344 10892.8654 7110.4082 8736.3217 4734.7939 4835.665 8397.5467 4533.6516 7036.8008 164455514 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 49157.9333 19558.8553 23159.9163 32757.3967 46347.6077 17747.7284 166835.6799 132538.1516 36723.2789 45198.0506 65123.3685 41601.8911 740270.9844 43209.7958 46956.2612 32105.0875 59658.7819 59658.7819 30518.5103 53889.9898 102679.3862 41363.6594 78240.3254 65966.951 29918.2364 23798.9194 45603.2494 34795.3458 109585.9227 70519.7938 124327.7201 139730.9882 46496.2817 35844.0486 32879.8298 107695.7651 27817712 bphF1 Organic Remediation Aromatics Polycyclic aromatics Cupriavidus oxalaticus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 11969.0385 5527.0509 5630.1534 2372.5133 4134.3386 4135.5446 8481.249 5713.3155 102496.6127 6223.3282 21288.2291 197789.2722 7427.0383 7427.0383 3815.8332 16295.4867 7257.0988 7136.7934 6182.3036 2868.9402 8603.0532 14082.9532 7709.8832 12593.5875 22412.6847 20672.809 2989.4439 8156.8537 9225.7628 3632.8217 6530.3982 344327925 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 7241.6077 2679.5373 1771.1364 2451.832 36930.6909 63082024 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 7600.1134 4054.4403 8706.6647 4826.9265 3160.2751 102703.2393 4850.2387 5096.2225 4892.4621 4341.0895 3082.4919 7117.8104 5899.8617 8406.5361 5245.6157 5735.6691 209486089 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11501.3505 22995.2071 17842.8518 34733.5509 26331.3498 9314.7682 36077.6045 2119.0463 16385.4038 22309.087 27941.8553 607855.6851 30466.1526 24767.458 35866.2938 25219.9591 25219.9591 45949.3883 72489.7541 16581.6 4898.1208 278981.9354 11042.1117 5588.3678 17113.5282 87481.8819 16909.2705 84066.2025 39373.9328 40298.3353 12554.2624 44334.7327 21732.5435 9394.0726 16414.6782 312140375 amyA Carbon Cycling Carbon degradation Starch Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 4437.8397 4515.2087 21078.627 5805.6569 13158.6911 4051.2424 5277.9619 3481.1391 60948.0838 4985.3671 33537.0816 2920.7292 2920.7292 2776.8897 11780.2386 7214.0366 7406.5325 6022.8062 5900.5241 5064.6555 9653.3256 4672.2291 10465.4872 7594.7277 9490.094 3254.7893 5588.6882 4630.382 3848.7999 6088.1252 111073799 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5352.3757 4525.9387 9048.5339 5497.2264 8753.5851 2660.3003 256585811 bend Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 32053.6767 24557.4154 23680.1001 41785.344 54963.5855 12165.8666 17242.0106 53246.381 28021.8539 25667.2925 37253.3815 23160.8078 768664.8584 32250.6508 34320.3894 27424.1586 26009.9034 26009.9034 65866.1348 46324.557 23695.121 117221.1632 44340.5209 58334.3122 16984.3249 29168.8759 32601.8223 48200.5239 88373.0028 26974.7408 45584.9676 14384.2411 21281.542 29845.3327 13910.6115 44559.6151 334136211 terc Metal Homeostasis Tellurium Detoxification Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 45975.8034 19116.6932 15182.7602 48685.2419 39212.0205 7991.3085 21033.352 14148.3136 18339.5054 24735.1111 143238.9438 14735.0525 463082.6094 81284.0324 28179.2213 26709.9044 13619.6249 13619.6249 22421.8436 42312.7474 29946.3025 23003.0448 45477.6296 32091.9682 16491.5484 18105.4035 38654.4225 11699.5604 60712.3549 31274.8476 40533.3237 10508.7263 19195.8252 63440.077 13092.1386 37516.8588 300310638 catb Organic Remediation Aromatics BTEX and related aromatics Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 6020.973 609747.6942 14746.6761 10579.4678 123093.2823 6076.9312 3636.3526 3636.3526 5994.522 5389.9735 60813.3452 16141.3959 3596.8582 4179.107 2842.5261 13847.7015 13480.548 5841.3999 5893.6873 10516.8834 3334.3012 126729285 PRI Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 301424.2527 267439.2476 340403.211 18079.1425 23707.5436 6936.519 8798.4022 16205.515 7062.741 15608.2578 16378.9963 11214.3402 7718.788 20242.8945 17819.7526 20314.9268 10536.2887 10536.2887 14699.3524 29216.8553 34663.0184 52247.9767 52897.6066 30961.7739 22486.8048 14835.5544 91342.9622 27999.4308 71899.11 56575.0548 28491.4286 12301.9776 62653.5574 21656.3217 50763.489 51032.724 72384802 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5523.1086 10417.8753 8056.01 19402.998 2647.1565 6721.1446 18345.9022 3824.6054 111115.3511 11216.6685 3259.3736 3259.3736 4333.5879 9353.1723 4370.2193 3890.5299 4470.1008 2141.5882 9980.079 3026.7073 7551.1927 48363.7846 7889.1347 2656.8614 2466.3431 3789.8538 4097.1569 6483.4808 407235087 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phenoliruptrix BR3459a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 5293.5301 5841.422 38065.4496 6335.9704 4399.384 3182.959 75405.2549 4142.2695 6574.8931 15259.8834 2535.7825 2535.7825 8454.6591 8684.1652 4730.9855 6800.4093 8367.2798 3204.2941 3825.6179 9586.3684 4689.5282 13563.3203 3574.8699 5059.5834 3503.0827 4015.2119 8887.9411 48057.352 69298861 urec Nitrogen Ammonification NA Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 15267.3168 10201.6994 24500.1993 14913.2924 51762.9867 13241.0006 10239.5791 9865.856 10111.7382 14417.8858 8307.7533 224419.0318 17007.5926 10902.8787 13411.7486 7634.459 7634.459 9524.3446 19159.1431 12767.536 18650.1805 15022.7867 21492.0892 6902.8006 4759.2661 15089.1397 13393.8547 33320.5403 9858.7147 16928.409 6714.2658 17360.996 16812.7517 8549.6692 16231.798 294678666 alkj Organic Remediation Other Hydrocarbons NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 9086.7521 7301.5812 4934.5666 3097.1665 2523.3072 4927.6929 6360.4557 6617.4569 84154.6379 11862.8582 7565.5584 7565.5584 12965.6039 11987.0463 3453.4015 9267.7281 3511.4431 2324.9082 23132.0353 3873.0306 16189.55 4898.7656 28839.1638 4905.9106 16665.4349 33591396 chnc Organic Remediation Other Hydrocarbons NA Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 14318.8069 507510.2421 13825.213 8166.2817 9270.7523 112225.216 23085.1884 13368.2296 16960.5402 15131.9412 238105.918 13306.1834 41137.2595 17344.7262 9974.5114 9974.5114 7908.8273 29425.5565 23227.9228 19344.5563 32592.5441 17101.1436 11961.6639 19877.302 10778.8558 24982.5708 67213.2511 16842.0834 183760.1748 15506.4737 17837.9963 25039.882 16154.7656 19177.7938 383779189 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 32692.4167 27406.5929 14198.49 7150.173 113922.3747 18452.4153 9290.3355 5233.6293 1780524.1345 7115.0576 10539.8372 7700.163 9761.9295 9761.9295 4632.0808 23053.0139 11407.2931 5416.0687 11743.4244 10236.5016 21445.4784 8707.8909 19918.148 3146.1424 1153532.1619 16781.2389 13221.7415 5577.8538 29797.5522 12330.8293 5169.8964 10364.5488 41408390 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 11094.31885 6602.636 6242.56695 44345.386 8597.0022 5103.8772 9916.57075 2762.61985 11602.99995 14277.9213 169700.6968 13656.78055 13288.1399 14182.9603 14182.9603 6489.8493 22890.46555 9535.47455 11319.56905 12254.91095 7467.6663 3912.85795 7644.69305 6953.50065 20993.64095 8189.2495 6796.5606 6507.01665 9971.0046 299791639 linb Organic Remediation Pesticides related compound NA Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 102163.6853 168637.4998 46852.5763 19967.3246 108082.5874 43549.9815 419228.0618 64605.4719 68013.8021 71175.7606 107918.1811 2553653.7838 152249.4541 72878.4958 145601.4424 100737.0127 100737.0127 70731.3307 272962.0055 69317.0081 77610.6378 272905.1751 160092.1687 76224.0292 171388.6299 114473.3438 47868.4384 195328.0135 47862.7402 103150.5683 69238.29 84952.9855 141556.3478 64695.0756 89618.1095 293189363 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus F0309 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 95892.3992 18833.9383 120990.3817 13191.9154 97306.6081 16411.8323 261527.0885 206204.099 100529.317 80299.4538 36493.1453 73914.4437 1359923.408 120429.9192 118960.4161 48026.356 152423.5802 152423.5802 38401.6366 160523.5164 100241.0158 187004.1088 89411.8367 37350.4001 22053.5127 56772.6178 117759.8243 49583.619 154120.2817 94433.0605 80330.9341 29742.7061 70520.8706 62242.9753 46723.9765 25940.792 219996403 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 6773.562 5341.824 5376.5806 32400.4328 4873.6428 6741.8881 90719.3638 5058.4298 6119.2909 6024.8003 4620.9109 4620.9109 6944.5811 9851.9452 5748.7122 6320.3656 12535.9087 7135.6207 3439.8588 16621.9069 2437.2675 14653.5844 12633.5689 12927.6405 3977.0066 5534.0699 7084.6308 3810.6786 170768033 narg Nitrogen Denitrification NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 14219.8362 12615.2473 10466.2105 17682.1712 4686.6235 5382.3237 5457.3743 9851.2126 376628.4728 19266.9527 189588.4968 19026.398 20633.5121 24594.1114 11634.9541 11634.9541 5978.1968 177824.0632 12616.7937 15677.6268 20736.8157 10480.354 7214.3022 19143.0426 12723.2667 185505.9695 59470.0831 32230.0582 15285.3443 10038.7292 22997.373 19415.0567 26796.1996 9506.8783 389574105 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus aerophilus KACC 16563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5242.012 6407.9682 9439.4735 3606.1233 2098.7455 20813.4271 6789.7503 112143.2065 7471.5167 6008.8441 5851.6021 8046.2414 6234.3544 6713.7038 59273.1065 2613.383 3755.09 25225.3154 3136.6519 14085.6124 5738.8694 11328.6877 6751.2212 3648.507 5440.8363 4180.6565 7214.2079 255107125 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 34963.9176 21791.4194 13553.2196 10315.5074 37420.6419 6798.6231 17858.8046 16846.5473 20603.0469 142719.4702 23965.9153 14119.4641 19275.0677 15299.9518 15299.9518 15006.0359 27949.581 35369.6647 116225.3673 41825.4371 38654.414 18134.6331 19515.9377 42941.0607 17314.5308 49483.4252 52757.0418 39956.3312 17970.1442 24855.7589 28078.0072 32711.5241 20027.1087 70930932 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9118.8471 34378.7055 6899.3054 3353.3208 5674.7847 36279.5954 4842.3906 107611.9329 16792.7455 13348.2002 6820.9641 4540.9523 4540.9523 8465.2966 11488.4145 6002.8989 9944.3815 8801.4547 9670.6141 3189.8873 5604.5245 6311.2611 14865.2017 21874.4158 5339.8879 11410.0264 25979.6446 5126.0037 8755.8194 4770.4602 10065.0874 208009952 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 173148.3722 12164.9416 7828.2461 103980.9224 6665.2885 12749.4131 8982.057 16330.1515 8710.3214 10715.902 11316.3669 212531.3986 12472.9462 10489.8501 26772.0754 11437.7425 11437.7425 9790.0874 23761.0874 11270.4694 18258.3102 16358.2896 7757.0432 5373.7415 9182.3987 17376.6345 10724.9563 37119.6425 14599.3115 19972.6393 9691.2302 9784.2269 13322.1372 7349.58 6429.4687 260415015 dehh109 Organic Remediation Chlorinated solvents NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7594.0595 10794.5472 1844.3731 7670.2476 7670.2476 9701.6664 4792.0902 4479.7216 383513906 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9333.9336 2773.6834 6362.3834 3036.6418 1845.4369 2396.663 219858049 urec Nitrogen Ammonification NA Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 5326.1561 5215.0951 3607.3525 6032.8441 5994.4817 6752.3802 6752.3802 5578.9467 8614.455 5024.41 2767.0072 4642.6883 9834.9544 9461.2728 9026.6434 2302.577 359307894 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 27270.3485 61164.9021 5214.2932 79714.3757 5087.4832 5103.3465 9095.4376 8807.516 10115.4686 20343.1585 46286.6703 165414.0313 18393.3564 15030.5814 15853.6397 21416.9226 21416.9226 6957.1505 35344.6745 10995.0722 11343.4104 41047.932 12063.8674 14703.0116 19070.7009 15744.7273 46458.8791 38277.1209 18734.9949 40943.7862 9721.3805 12286.6398 33813.9808 10736.2116 27241.65 90655584 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 4P21 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4447.2057 4970.5818 3865.9206 4102.7184 2462.6094 5626.1219 3362.5599 2861.8334 2861.8334 4393.3421 3652.0162 6567.6977 3774.307 8263.4849 12462.0577 5683.5589 9105.9855 2593.9808 3715.9586 3196.9371 1957.9368 6033.707 149908977 atzb Organic Remediation Herbicides related compound NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 6389.7762 6244.1398 4608.4523 4646.6441 6115.5493 179230.3083 5602.8559 5949.5305 3832.9911 3832.9911 6079.3624 6620.8264 4744.8703 3157.1451 20686.5719 2090.0562 5463.8203 15176.4083 2362.7519 2958.9453 3535.0866 2299.2624 334563678 ppx Phosphorus Polyphosphate degradation NA Corynebacterium bovis DSM 20582 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium bovis; 6774.8173 8511.9774 2650.2196 14616.9976 4816.5066 3430.5394 6333.3043 10734.8525 7033395.4996 21171.0982 4373.7687 4987.3877 6679.8521 6679.8521 14091.0555 5892.5196 49892.7381 37789.4724 5614.4383 29405.5109 100987.805 16870.7216 4910.1894 8774.4996 3500.8717 2573.1629 11857.7347 20763.013 167668110 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 8088.0536 6911.9801 4058.9817 15422.7529 5415.8062 4235.9541 8593.5773 20346.309 3398.8546 136706.9164 6803.4925 7305.4374 3300.1249 3300.1249 6100.5008 11222.2368 8868.7202 8748.6534 11361.2261 14160.7699 5978.3719 4698.5582 9826.4941 5257.2201 19892.5814 7188.4871 12068.3466 2579.3662 5987.1232 4781.931 3990.5036 8832.9195 13423934 xylc Organic Remediation Aromatics BTEX and related aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 6386.6044 137720.5392 4670.1774 5204.7326 4223.0376 4223.0376 40421.8242 2817.4965 3900.0298 7778.9493 13097.1041 3529.5407 325521740 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. TJI49 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8689.7957 5007.5606 19945.4874 7221.0827 8229.3928 4114.2489 6638.1523 13040.9667 69090.7251 4837.3733 11583.7616 2661.3135 2661.3135 10169.4813 4919.2989 4034.8955 2516.5114 6500.2304 9049.2193 4924.2669 13306.9303 12792.9553 15134.322 2978.2974 7256.4648 3283.7769 2644.2395 9207.0788 32308019 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5121.2913 9835.1191 400120.2051 4586.846 5229.3175 9754.914 6504.7268 5668.03 2772.7981 5117.3851 4848.4164 9643.1875 394986668 nosz Nitrogen Denitrification NA Bacillus sp. ET superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11986.8879 11928.8989 37964.6325 18720.5189 26129.8932 19436.1503 17763.7005 8935.4388 18844.5189 25819.7511 149417.3163 12973.8479 11258.435 11705.7357 10442.641 10442.641 38661.4185 34357.3005 6821.0827 5522.3714 25497.0479 5574.4448 7078.4443 5994.7892 17653.8088 17251.1366 68436.8195 15335.7648 24470.8648 9135.7921 18673.0819 10794.6485 7273.5343 13274.8859 118059166 phn Organic Remediation Herbicides related compound NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 5736.1197 12821.0987 8608.4226 6402.668 3241.898 6066.7428 3075.306 75160.271 5283.0144 3735.7063 5118.6167 7042.7065 7042.7065 4286.506 8753.9979 4172.6169 5202.2378 5127.7882 10254.8376 2680.3379 4389.352 7219.8058 5289.5026 5892.0455 4801.0561 4099.209 3443.1231 4897.0468 33320469 dsrB Sulfur sulfite reduction NA Desulfovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5768.0322 5459.8954 9753.6361 70012.1547 8854.4983 5856.2762 13301.4201 4439.338 103539.5957 7599.6726 7005.1419 10867.3147 10162.4797 10162.4797 6179.0652 13856.8168 7534.8372 4770.1707 16631.2093 8286.7608 7904.9478 15455.741 4581.0038 14728.4639 24045.3328 13743.6422 3041.533 10339.106 8594.1699 6138.9016 332340313 amyA Carbon Cycling Carbon degradation Starch Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 90433.4382 22602.9097 83598.0583 50965.6577 19022.9347 37083.9589 59252.6351 156179.1953 49048.8372 63135.9588 7103346.2252 49419.6474 260556.2202 139527.3564 71234.4386 71234.4386 28941.8009 132114.3057 36011.1419 107793.3427 403064.0483 76346.5017 85913.3256 58474.5255 47763.4113 78415.9057 135760.3804 93833.8148 86842.7463 31518.8386 55119.504 84579.3844 96611.4673 119577.2932 359552694 pula Carbon Cycling Carbon degradation Starch Pullulanibacillus naganoensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Pullulanibacillus; 11097.6772 8202.431 11321.9935 11952.9704 7170.5305 6211.2462 3715.5638 7057.2882 13094.3596 5481.2358 238601.1318 15862.3136 9495.4486 7618.237 4591.6603 4591.6603 9337.5131 13225.659 11186.0742 10157.7052 15151.3892 9891.5389 7030.7551 7022.8267 19996.7338 4778.9957 19336.6829 10738.6369 15561.5245 4855.6249 8688.2177 7376.8744 6222.6346 16357.6281 91692446 arsc Metal Homeostasis Arsenic Detoxification Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 61845.5701 21033.7921 27551.6485 27299.2576 13811.8413 19191.3388 17642.1691 18538.7384 20841.324 24885.6738 12141.5128 458870.091 30966.0682 22504.7432 23325.3775 11879.4075 11879.4075 20603.0714 40653.3919 24272.4998 25648.6741 28884.3991 47598.4591 21817.2073 22049.1663 27228.0085 14328.1276 49248.2777 16047.6999 29844.2601 16055.2086 26359.4554 30096.4746 15254.8951 41755.7162 345865142 sqr Sulfur Sulfide Oxidation NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 5495.5018 92321.1034 4288.4626 4972.1417 5115.4289 9663.4537 71456.7422 6541.7506 8344.7697 21124.9384 21124.9384 3192.3753 51323.5931 4175.6491 5240.5205 6691.9517 3606.8351 4802.9579 5575.3426 6948.386 35278.4506 6655.7094 10570.1328 3140.2695 3394.2602 13664.3977 3395.5942 88776871 nosz Nitrogen Denitrification NA Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 14229.0134 6716.5624 9097.198 53525.0295 9960.5642 15840.7272 18525.2379 28858.3835 11494.6573 9668.1603 99827.6907 14083.3136 16284.5768 14112.6759 8108.8024 8108.8024 6267.8536 15091.228 11870.5681 13913.8281 18908.9343 15709.5294 3137.0246 8111.4494 13894.6692 7841.6514 48312.6594 23059.979 22271.5872 14719.542 8991.6326 12202.1751 3475.7698 9488.8969 41386521 phenol_oxidase Carbon Cycling Carbon degradation Lignin Psathyrella corrugis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Psathyrella; 34202.8338 23743.5121 25077.2884 8290.1078 4778.2946 57553.9219 23578.484 11327.3075 30486.7419 34334.4246 20422.1503 789739.9 28096.8286 25823.9694 19075.012 44067.062 44067.062 20696.5198 46423.8981 20458.2216 33039.4714 49874.3316 27868.0313 11590.4157 18199.6393 26778.4714 21438.5096 112881.1281 23677.9477 25652.2432 13998.3012 23329.2691 12268.5321 22337.7891 54653.3702 53758066 arsc Metal Homeostasis Arsenic Detoxification Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 48754.0352 6739.128 6399.4007 96351.7557 58379.1033 3633.0971 11875.0008 14282.4732 14255.4577 18926.5408 375189.4795 23878.2246 51277.6012 19261.8541 13783.7904 13783.7904 6959.1852 44539.4532 21327.7655 11270.17 21710.3574 15954.8108 7892.4669 14514.7968 16045.0574 30566.0415 42775.001 17933.9931 19493.3039 8847.173 46564.0327 22223.6252 9736.7589 19117.5917 115500896 soxY Sulfur Sulfur Oxidation NA Hydrogenophilus thermoluteolus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 9330.4468 54871.8774 4539.3909 105365.2893 32101.0349 3540.5982 8732.8864 8775.2019 6261.0137 12805.1014 43428.6641 286373.0366 24647.5988 18709.8411 33807.3647 18938.6849 18938.6849 5930.4214 25633.7892 23007.8093 8425.4581 21237.784 9062.3403 8684.5076 14837.1575 24937.5292 5125.9455 29718.434 37281.8537 26729.0976 6613.6673 12282.8685 15258.5589 5708.9068 6693827 inulinase Carbon Cycling Carbon degradation Inulin Pseudomonas mucidolens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 68812.5143 34325.8526 109307.7561 37381.6336 72071.2878 17755.5605 114132.5138 183522.2222 63404.701 95990.9969 105492.7716 92825.2272 1137669.1831 459771.8312 76711.2608 118689.1122 70196.5644 70196.5644 146362.5311 79752.4998 63874.7633 149282.5708 79147.7187 56511.0078 87979.0055 128399.1716 77497.0654 153405.6965 108739.3685 110706.8504 162549.7339 31373.1829 82017.7375 75179.2001 61007.8065 73344.1821 158312294 xylanase Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9500.9515 180270.3926 44847.4034 31914.6418 18127.6166 3135.534 3580.0862 5465.6482 3484.3523 12516.4766 5988.2294 8686.7128 56158.2677 3324.218 3324.218 3759.3197 17321.5579 5526.1154 5882.9814 9747.5229 4864.8959 2594.8334 4635.0747 37079.2446 21300.9958 9202.2838 14319.6984 6753.2899 4122.5323 12633.5268 13992.4474 5458.456 4927.2758 340771943 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 15015.4083 7827.364 10287.2025 13403.4426 13758.297 10955.3384 11867.543 10021.2568 14041.7358 6135.29 756921.659 18714.8812 15140.6234 15961.7794 9519.4215 9519.4215 10259.8063 34461.1628 20711.3692 20295.6437 18172.2936 23465.9511 10521.6528 29435.0994 15942.7345 12495.1807 36650.7036 12025.8717 21609.2312 11863.8426 12009.2249 13436.8671 12366.6183 19856.6762 393723093 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. PAMC 26605 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5262.7976 15215.1959 140038.9277 23074.5218 4251.1737 8736.1708 5503.0555 19342.5292 4808.4588 158991.9525 11646.8093 8320.8683 27971.6455 6274.7386 6274.7386 6095.9605 9148.3183 2528.8985 9198.2944 28525.5096 5149.2683 27792.8262 17338.5826 23640.9424 7446.49 8480.2319 6908.3323 3116.083 5943.5291 389580143 amyA Carbon Cycling Carbon degradation Starch Desulfobacter postgatei 2ac9 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter;species:Desulfobacter postgatei; 7229.9201 1603040.1248 387904.6326 4101.0715 4556.4714 2529.0746 5620.1977 3869.8054 7244.4394 80267.8436 5911.3339 6677.4298 2609.045 2609.045 4673.7422 9537.6164 4735.4283 11718.859 6875.8796 8429.4486 3114.7276 4763.7528 8028.7041 3073.7753 14221.3713 4127.9988 6875.071 3240.7083 5095.6235 4641.834 4055.8081 18938.8082 168703108 arsm Metal Homeostasis Arsenic Detoxification Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 5368.8469 4303.5122 4966.1471 4051.6839 4710.9483 12112.3497 7961.5666 67011.6588 7823.5783 4603.4937 15144.6091 10538.7403 10538.7403 2901.372 6868.3905 5888.0715 6216.7768 9057.5151 4773.4458 6791.6262 3349.8283 2153.1591 11791.2323 9273.2123 10157.5409 3162.8615 4888.6039 7336.2199 3074.0788 4543.3503 47155106 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5673.5439 2419.8685 3781.9968 3488.87 6169.5023 4330.5064 3862.1921 6783.9884 4351.1987 6577.1484 8938.9587 3991.145 9976.344 2495.8272 4181.9053 2196.1347 5314.6307 83840203 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 29103.3449 17890.4892 16057.0588 22842.3379 44945.1011 15045.9156 15309.3988 17002.9625 16624.601 12752.9755 18416.7756 20155.7613 415200.3576 29541.9533 36841.5141 24114.1701 27032.7411 27032.7411 24133.3503 35956.2246 29207.3762 25735.7278 52478.9636 31072.9586 12744.8782 24422.9882 24574.4508 97244.0811 53350.4839 36031.2801 43083.1392 20014.4353 61979.6378 21014.2048 16983.6186 54263.3855 325971296 cda Carbon Cycling Carbon degradation Starch Sphaerochaeta globus str. Buddy superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta globosa; 4264.9995 7465.1546 2261.0282 3437.5672 4261.4814 2759.685 119680.215 5129.5615 2270.309 2270.309 3963.5098 8510.8528 5360.644 5642.7775 7563.4653 5359.1136 3024.8633 3981.5093 10322.1472 3432.2681 13682.8491 5903.9128 8507.3085 2933.5721 4454.1788 3638.6031 3911.0858 8156.2784 371583932 mer Metal Homeostasis Mercury Detoxification Corynebacterium diphtheriae BH8 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 539647.1245 10659.8987 133748.9096 242466.2206 215953.07 87739.3945 162278.6443 268133.0266 680186.0783 241023.8633 200692.5649 197790.1824 2108750.5899 772997.4583 738622.881 175956.5642 218607.6985 218607.6985 95426.8095 211447.9659 209042.3273 196621.5665 214492.9601 147162.825 117118.7284 164597.3251 205092.0369 140889.9917 398978.5833 174832.1016 191466.154 183658.1893 242980.8721 182940.9987 182537.8952 262548.5032 126460067 mer Metal Homeostasis Mercury Detoxification Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 11638.6238 7632.4531 9503.9727 11039.1253 4707.3348 8729.7452 9059.9055 5256.9214 12881.3367 14660.2615 7666.8489 283724.4383 16379.051 20335.9408 12195.6486 210879.8403 210879.8403 11577.2143 23693.1795 19659.4391 30572.7564 14187.3551 14455.152 6109.8868 8506.6382 21768.1247 8937.3518 38423.4842 16153.1624 19524.7004 7711.3104 10466.0021 13048.1328 9527.7801 24152.169 349780467 dsra Sulfur sulfite reduction NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 3900.9783 2859.2873 4601.6176 4088.9918 5127.5408 4412.6781 3091.2278 8570.3968 3189.0471 2823.2557 7199.8376 4202.243 4582.5543 4519.5609 5606.3562 2804.4378 5532.1085 12381.3954 2409.3612 12057.0112 7140.443 9384.769 5651.0572 4939.6075 2653.3565 6303.3013 258647651 amyA Carbon Cycling Carbon degradation Starch Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 4723.3905 13765.4524 4795.6365 2738.3829 2191.2196 4436.3336 6483.7228 28603.9534 2873.7881 30071.5708 4323.571 4323.571 2571.6465 11432.0901 8846.415 30520.9467 13027.8588 4706.9596 4167.1499 34705.9525 11720.4311 12938.7574 15469.0172 9266.2418 10103.7591 14379.9705 6383.6141 4762.5102 3223.8523 8625.3636 383814565 arylest Organic Remediation Aromatics Other aromatics Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 11164.0015 9953.8706 10563.022 5543.0507 6587.9083 9130.2278 5421.4689 12840.5865 146415.2612 6040.9278 21010.6054 8356.5185 8610.4695 8610.4695 4683.8006 23695.8586 4264.8012 15700.2178 25048.296 4012.9849 13248.6686 8379.6465 5191.8962 22117.8608 25468.0698 11230.0087 19966.1585 33746.4764 35153.7608 6336.2355 13562.3122 389879540 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 15794.3127 17793.284 19091.9446 13255.9082 38063.3704 13232.5915 5960.3596 7831.0061 7903.6312 53612.9802 59948.6694 19219.4492 215468.9651 10212.1637 13605.9272 21224.8907 15111.9423 15111.9423 7882.9803 26972.9311 25863.7106 8490.4252 18034.1995 46507.3063 9476.9246 17353.7706 19418.8845 8091.3553 20672.753 20966.0895 38824.7996 11213.2234 12755.2259 18865.2685 6096.2137 47160.9254 70959472 mnp Carbon Cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 9177.4925 17934.1125 4586.3055 37302.4531 3573.0241 8478.523 2212.0325 2212.0325 11101.7049 8696.686 11496.7279 4517.5619 13517.239 12487.2583 43514.6388 16738.6585 23667.6265 6955.342 3256.8327 3067.4955 4175.7122 5296.2421 8402.5258 365271650 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22350.802 13534.8356 16525.773 29722.749 14045.2561 7860.055 56186.9438 200952.2193 19267.3779 26385.1028 35522.9585 39411.5834 678849.8987 60613.7235 74617.3772 24626.8633 43558.8628 43558.8628 20034.9749 66874.9319 36897.258 31270.4298 207179.3912 27640.2791 30913.2558 19771.4546 59835.2944 39887.9711 132332.5899 22172.1072 49389.5054 32961.7631 36136.6778 50555.627 18283.6578 164905.7072 170768174 dmsa Organic Remediation Others NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 203724.8047 28892.54 97287.5436 150470.8425 175344.965 1688964.3156 78152.299 307676.4771 92950.1283 70077.6596 387374.747 97964.8741 2139177.1286 183302.3436 123909.9197 217683.1876 125522.0116 125522.0116 52131.8333 114374.5649 49674.83 90477.06 195573.5728 185664.969 59200.8514 58670.5108 69564.0924 120987.1488 231594.8837 77637.6965 170203.4606 71842.2313 80174.5674 108772.2225 185164.2267 122814.771 63029776 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 47592.1061 23642.7757 27132.8568 47544.1873 19190.1433 12863.1322 25880.6066 20499.9674 35988.2325 47369.2599 29543.0523 651972.4943 36257.7777 98159.3025 265068.6283 50030.969 50030.969 21818.0151 99312.4254 29057.2072 181688.7859 44118.6934 30953.3312 40452.6551 22993.6585 90631.873 18461.2614 65726.5724 69597.6854 40541.72 19711.9944 19908.784 31751.0026 33563.1253 812953.567 332298188 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 7670.243 11665.9711 249469.796 8097.7738 6903.8495 3787.7854 6960.7691 5452.6473 7462.3842 6585.1447 9007.2055 242023.2302 6482.9494 15475.7761 4473.7743 12099.236 12099.236 20829.3298 10877.0884 6422.1123 10497.6918 10785.4294 6938.4323 20251.9244 5735.2782 13458.8474 12948.2966 21794.6453 16259.8844 9200.1186 4507.0152 7408.7905 4912.23 5442.5614 4794.9771 219965663 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23079.1117 12464.6595 16367.9308 14829.5609 5709.1547 19069.4534 22840.6813 26880.3397 47065.0561 31004.1862 213356.2329 19994.2023 26922.7467 36040.2121 20348.4801 20348.4801 38782.1243 37296.2233 37040.5532 24861.2583 20954.1943 10810.4467 10338.6259 22368.6359 12680.6416 20216.24 53743.3256 67287.9215 44062.9245 16526.2983 26741.4387 26068.8769 15994.3172 59440.0856 134106731 glx Carbon Cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans B-3501A superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 35958.557 18067.8512 22226.2771 52042.2376 17964.3764 19449.8302 24354.1674 59207.3956 17202.8525 24068.3655 28218.8941 16547.6976 681387.4115 39045.2991 31545.1834 36703.0898 21525.4436 21525.4436 18956.9285 38413.1915 31311.9606 24828.4184 51214.8246 46634.2856 16038.4806 16914.3755 43757.2793 14459.1943 53330.8279 36017.1833 39403.9295 14570.8973 19759.4682 53764.2546 17430.1727 44065.2858 27350645 vana Carbon Cycling Carbon degradation Vanillin/Lignin Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 167889.9164 151451.7424 436871.4095 46392.1571 153120.9638 33663.7958 71131.5592 120546.3779 88461.3862 72457.9935 77580.1164 219326.5156 3267145.2804 146843.0193 121783.9939 664702.1742 127236.2138 127236.2138 70726.8595 167414.7326 58637.1625 115800.3119 829559.2324 107149.8349 105623.413 123155.038 73820.3043 73166.4099 288420.7327 173002.278 163259.6115 71124.6504 100404.5238 107199.5171 90736.1057 119900.7661 76577472 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20782.9659 121595.7187 17859.3991 15683.3501 9388.9039 35016.9441 16889.0073 8307.5931 12217.5417 16937.1528 8913.9265 377659.8039 15602.5491 16761.7476 31471.1307 6259.0157 6259.0157 9576.8484 31960.3982 27700.1264 1389022.5837 18778.9147 30038.3395 9205.7393 9827.1032 18093.5218 30194.1816 36699.2049 9898.4809 19959.4299 11155.4276 11203.0317 14342.5044 8520.2796 29421.3539 407784179 b_lactamase Virulence Antibiotic resistance Degradation Oceanibaculum indicum P24 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Oceanibaculum;species:Oceanibaculum indicum; 184283.8983 648254.2098 186870.1319 62332.8199 99441.7717 51266.5404 86015.3292 128908.3654 81342.4752 405223.689 242585.1065 101246.8336 2701236.1368 138883.2186 87531.2875 843932.1741 212355.4484 212355.4484 118263.2563 204654.9706 165019.0006 166576.3257 239323.7268 295416.0058 98440.2271 78838.6463 107130.878 104311.3163 284843.986 188814.8641 230063.0647 52427.847 153124.3442 210020.3474 115476.1826 113210.1904 119225946 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 46078.7062 22091.1065 2415.5355 3632.1993 5403.0227 2986.4421 2986.4421 7106.848 87482.9081 11627.9297 184752.2557 6788.0295 2491.1454 7576.0039 10076.8249 3847.4436 7054.4945 5255.1365 2924.1449 3551.2031 4380.3364 35176.9177 340348479 amyA Carbon Cycling Carbon degradation Starch Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 37450.6745 6510.9565 19179.9971 67415.4224 20201.9395 26674.087 18591.4491 14736.0234 47669.3245 31298.9632 22701.2625 308667.8105 22209.966 45636.9686 30805.2806 25873.5919 25873.5919 56369.7444 38720.7166 44123.1666 18688.4029 29861.1974 14419.8547 11954.0002 16025.8913 44009.6744 28290.6097 65798.3563 41335.0783 145930.4148 13857.1995 33391.1587 21858.4317 17280.1335 21450.5428 300310483 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 29404.1098 20492.3086 7598.9489 11655.8235 13179.1767 10325.6453 96660.7095 11438.8629 17250.9691 555297.1734 13743.6897 196663.1931 27867.2418 15710.0414 9856.0673 8792.3384 8792.3384 12296.4046 26303.1495 12273.2239 21019.4507 28932.9778 9881.4671 13524.039 11723.3312 25460.0322 100028.444 27351.487 18767.6132 28124.5027 15113.3431 26813.5864 16034.1353 41087.8769 27771.2104 402504060 nitrilase Organic Remediation Aromatics Other aromatics Paenibacillus alvei DSM 29 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus alvei; 4836.8398 4713.6729 14369.5545 4749.2294 4837.8715 7632.1172 2851.7268 63574.7569 6234.2653 6061.3811 3044.6183 3044.6183 3385.2797 8755.1864 6437.5315 6494.2073 6918.5453 5566.5068 2522.8479 3017.0723 8093.0784 2441.2142 15465.5907 7061.8568 5938.3739 4918.7569 3671.5148 4474.5853 3295.0066 5331.8626 324999954 vgb Virulence Antibiotic resistance Degradation Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 4677.7561 10669.0959 13928.4921 6148.3606 4821.072 5825.2129 3276.7097 4323.2174 12263.0311 129351.305 7731.8824 4977.484 6382.7715 4669.6923 4669.6923 2826.3503 7895.2409 8812.316 6159.2487 7973.115 4913.5994 3886.3638 12815.1211 3085.7408 13487.42 9272.5247 9727.4068 67970.548 7411.7329 5324.4148 3296.0741 334732945 cysJ Sulfur Reduction NA Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 6123.0267 10070.262 7530.3081 3418.4054 3698.0702 10318.6431 5815.0554 148386.6021 5236.6131 4401.2661 5612.3052 7185.4447 7185.4447 4395.9823 29582.3446 5531.0314 15025.5609 3673.9832 9548.0465 26449.9989 3569.4633 10177.811 5691.9916 5640.3911 2069.3166 9181.7447 8617.9545 5504.1586 152043.5595 229829442 chitinase Carbon Cycling Carbon degradation Chitin Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 17394.4931 52253.4522 5659.0992 222105.7866 4911.6804 6117.2668 4567.3599 4584.8845 2610.6471 10363.359 5135.4412 2591.9051 4260.5185 49256.4201 5622.2127 6510.2481 3468.0269 10690.5 2171.2171 84145.7182 392721663 pchcf Organic Remediation Aromatics BTEX and related aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 8937.2105 29620.3846 144769.0268 78388.414 2112.377 3872.8369 10666.6598 7020.5306 8639.9612 6482.3593 88846.5509 9896.9325 7218.8266 6869.2307 2774.8337 2774.8337 5776.758 53866.4578 7543.9331 8930.6419 8392.5204 3640.6716 3794.5386 8723.1186 3048.36 14938.134 7579.1275 9478.6829 6065.9884 5998.9922 5337.5279 3373.1487 7215.8987 344039093 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 5996.4825 11768.5459 4679.2135 15753.2084 2722.7022 21214.7744 7304.9757 4678.7464 9358.1376 4692.0781 4692.0781 8438.0715 7559.5783 6678.0091 2255.067 10092.3137 8225.3699 2339.5869 7783.9331 3611.218 2635.4049 22973.3356 227990289 glucoamylase Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 26921.7469 20955.3121 25256.5211 24416.8406 50638.4877 27936.8066 15050.8861 64789.6944 14275.9394 25727.8288 38868.4958 18829.8731 656746.6429 37373.6596 45005.0145 48805.3797 41734.5684 41734.5684 17771.1458 40345.2474 26077.4557 28471.3153 29852.0697 41239.9131 14185.9387 17905.8625 37802.9769 13019.8447 55758.7564 28100.5798 44853.9732 30467.7224 19589.4671 30809.9996 13234.1556 29358.235 359797908 phn Organic Remediation Herbicides related compound NA Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 9549.1213 16342.7699 7754.4078 6025.6042 8215.0573 9305.5247 8366.4238 4412.6574 89594.3208 30232.5876 10793.9233 7705.9775 6739.1732 6739.1732 6462.5678 53795.9853 8148.3888 5133.4517 4722.5574 10044.7653 3036.9154 34637.5811 14443.4998 4686.6004 17850.3586 13308.4534 11805.2152 3739.5215 8592.202 5119.4369 2471.8526 390171757 arsc Metal Homeostasis Arsenic Detoxification bacterium Lb superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 28925.493 13262.4753 13377.2649 11108.174 10105.0469 21721.8856 17386.2461 22517.1661 23403.8366 12833.4451 486309.274 22366.1989 23237.8244 15955.4286 16321.4607 16321.4607 14292.2962 31298.989 48843.8534 19372.3585 34451.4487 25228.4429 11411.3434 20965.9572 24084.5948 16810.7781 45957.2458 24739.4352 41047.5178 14307.8348 17735.1846 19810.7963 16849.8075 24007.2807 365285805 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7567.9623 11135.1164 3043.5734 5033.5095 3685.5771 10570.3607 3905.1999 89636.2441 4229.5796 6117.385 4514.0021 7615.3799 7615.3799 5486.722 10234.4949 4450.4254 8030.2961 7203.2419 5541.9046 4429.6793 3970.5195 9681.2451 3103.0964 9510.1466 7549.4883 7322.1421 3195.3919 7716.1201 4399.5222 1924.3488 224024082 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7329.0051 5501.2789 2401.2246 75577.2005 7983.2134 12406.1199 3096.0943 3096.0943 8414.8226 3166.6515 71383794 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 17171.7568 5929.3599 6454.7724 4822.0545 5454.963 20833.1366 8464.135 11520.5657 5435.0668 210143.8507 8553.0948 16530.8323 4745.9546 5082.4379 5082.4379 6015.8218 15175.6814 18961.6663 7884.9812 322592.7908 13065.9488 7094.1765 6230.4656 17169.7618 5414.2775 75873.8072 10142.2195 16655.9513 4671.3933 7800.3535 19773.154 6208.5369 21693.8041 347752947 chrr Metal Homeostasis Chromium Detoxification Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 13122.8187 16416.0351 5599.9605 6337.7662 25538.8463 4785.4236 7634.3376 8022.9649 13957.8987 7177.5651 15363.216 7561.5626 185587.1551 14091.3817 23764.1355 30770.7674 10119.0312 10119.0312 6460.7309 23428.8393 21045.4725 22700.0709 9076.4518 21057.382 6480.1452 12135.933 18396.6319 10572.3126 23414.2234 17673.3574 21969.2994 6417.7397 12528.7365 9978.2315 5166.1379 13822.944 217405180 actin_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 36587.7459 7534.9536 13892.0255 35444.6141 14816.781 8194.9486 15211.8913 3229.7677 8302.7639 10966.6668 15299.3251 219749.0087 31748.7779 23145.8745 24398.9027 16952.4197 16952.4197 9012.2846 18645.1443 20994.9359 7538.1945 16673.1129 47317.4759 14897.829 11449.97 27369.4854 16304.6192 28670.9041 26357.1193 52647.8658 10570.8988 14202.3743 25637.8557 36907.5648 12400.1368 383780036 terc Metal Homeostasis Tellurium Detoxification Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 10149.2668 9941.0226 8406.0827 11252.1325 9373.3075 10189.3171 6325.7387 3857.8716 5964.6096 8904.3555 4575.7254 210293.7248 10788.1876 9385.039 35003.7466 4895.6739 4895.6739 6839.9762 11205.246 14871.795 10524.4711 12037.3617 14186.3576 6153.6408 10724.8989 12728.6185 6280.477 26820.0738 7513.832 12120.1906 10095.0421 6375.5743 9834.7474 5833.3147 18347.849 388264147 proO Organic Remediation Aromatics Other aromatics Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 4183.2181 2633.0466 10345.0432 6170.4216 121323.0659 121323.0659 9396.3111 34779.3369 8769.8627 2612.0295 43863.9543 2672.5374 3950.4902 1907.5454 6257.7468 389866120 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 32938.5991 6562.0176 11910.9835 10086.4075 18866.9721 29928.9732 31043.6773 36897.3852 6240.1139 29282.2934 40455.262 26487.3949 21444.8929 21444.8929 14871.6744 35778.8497 12249.8742 11395.3411 59485.0062 476662.8932 29078.3028 14911.6917 16297.9126 10086.0936 44879.3035 41820.5326 32321.8092 42768.4626 54231.0874 27265.4391 17467.2247 25559.9625 300311641 amyA Carbon Cycling Carbon degradation Starch Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 7437.2471 42370.8112 14192.293 70754.0917 29347.8507 6194.4147 13979.5528 6298.9401 7275.6099 17221.4843 302951.5934 18200.6046 190067.4907 1071983.1205 26256.639 26256.639 5979.8914 21604.4455 16994.4145 530608.656 7248.409 6580.5782 4600.9931 10434.4099 28807.8892 84510.6922 36088.0867 25855.4206 34971.9192 27581.3112 15472.9379 11808.2785 12533.3466 6088.5302 219544850 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 5905.3882 8682.3688 10663.939 2779.243 8212.418 6343.5083 8433.362 2641.8565 9919.2298 8990.391 2392.4552 3799.2883 48995928 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 4417.0288 4322.8621 2738.6031 2132.4205 6565.2634 5228.5643 3404.0241 60779.8803 4726.9867 3839.037 8047.7495 6241.4325 6545.1379 11242.4933 5350.8726 2734.215 10033.917 2874.056 10494.6899 5492.8605 9258.9949 2542.8379 4796.2884 3627.4159 2708.6506 8148.0817 338756728 ppk Phosphorus Polyphosphate synthesis NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 7208.1703 10184.8075 8772.7503 7746.7868 3459.9297 7243.9271 6986.5121 15215.1841 4139.6694 4299.0808 6884.7522 6044.1123 6122.7296 7657.5142 7657.5142 3040.4982 12568.1684 6370.614 12884.1995 4194.3967 4264.2038 5565.8189 6432.1831 4814.7464 17408.3601 12249.6976 12736.0586 3511.7403 4476.1407 28009.0166 5838.2404 13696.7613 114764524 phn Organic Remediation Herbicides related compound NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 107190.8317 45185.8661 83451.6307 74700.1175 154997.9735 161700.6712 85958.0129 121204.4735 154955.7755 131025.9254 108974.1303 73851.0301 1727266.5458 118292.4949 399828.1226 221796.6649 143109.5101 143109.5101 144253.6084 91492.1295 74559.8584 73239.8157 112991.1896 101071.1653 84086.1498 113161.7242 117915.6603 52359.7921 139213.9144 118971.9883 122460.292 65966.7901 60941.8926 102021.653 34720.9414 192617.2083 25900718 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4539.4658 6294.9721 4743.5565 9492.019 3195.1984 3803.7071 3038.3259 6044.6265 4740.69 3461.6382 272371.1213 5262.26 3910.8248 16052.0728 6256.2652 6256.2652 3743.7648 12394.0463 6935.5442 6242.0091 6885.8955 2538.1288 2985.1599 6787.0617 2940.6908 11879.6977 4116.3525 6190.6265 4455.8345 4378.2328 4757.3446 4138.6079 6777.508 328544100 chrr Metal Homeostasis Chromium Detoxification Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 103782.0439 135952.8408 301884.5741 83867.8002 366233.0347 95731.2977 34774.0445 73140.3532 41307.354 77443.555 75789.6308 60086.2002 2321283.0597 87025.3612 123635.148 188182.9762 117105.8486 117105.8486 92138.0309 110936.5989 71397.4759 93168.7671 1217951.7913 77790.8941 33893.2141 65734.1432 125966.2308 33193.6958 214459.2893 170263.0978 186428.5106 40254.8852 61869.2185 67364.961 38201.4931 56913.9056 335339811 rgl Carbon Cycling Carbon degradation Pectin Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 24149.6492 13452.0089 25233.2302 10952.3099 4291.4379 21590.799 21580.287 14181.7095 13775.9806 19501.4138 18096.9466 2719410.0025 19519.8821 22308.2286 17245.7265 12360.2046 12360.2046 15228.4227 28539.6563 24095.6366 28351.071 21380.0737 26136.5021 10174.059 13419.9263 28950.3147 13296.5172 38464.5442 22834.4993 21666.8286 11211.24 18321.9088 18514.8937 20337.0826 103179.0244 256558705 amyA Carbon Cycling Carbon degradation Starch Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 12244.1632 10089.9605 13997.7371 7871.5712 12368.508 4503.1534 7593.9761 17746.1052 17117.4461 1019937.538 19723.3897 20587.6982 7580.1828 7465.5766 7465.5766 16285.5382 22290.1893 10522.3593 19021.9932 15492.2504 42775.3462 11052.6957 17847.6001 13472.5751 7189.3307 27741.8194 5734.9088 13337.1303 9725.817 31726.8727 12665.7583 6528.2927 13124.8051 46520031 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5089.7962 2470.2079 23158.5244 2185.3885 3333.8524 107492.8848 4777.3296 3538.9672 13115.8592 4712.693 4144.7345 19185.5082 8013.4966 4250.4119 6172.4068 326404795 mer Metal Homeostasis Mercury Detoxification Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 4609.8298 23982.7235 12003.7476 24356.1677 4194.271 2388.9752 37969.3538 7604.4336 4810.0879 157077.1052 5434.3789 6507.3485 5783.4326 4016.3118 4016.3118 5062.4204 10739.8537 15073.1499 7663.1918 8222.0546 12584.4849 3248.7971 4792.2438 12531.055 5614.8785 16180.7119 26459.5931 13325.2527 5965.5319 5675.9446 4736.8996 6700.0513 10034.5453 296931330 amyA Carbon Cycling Carbon degradation Starch Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 35127.4143 82369.2031 25752.5692 95928.5743 10638.4584 21506.3334 32831.0668 20242.3973 41886.762 34228.1971 26297.7592 851115.0795 37256.172 627129.1325 28361.8635 60618.382 60618.382 16678.3198 55555.9906 14629.323 21816.04 70457.8185 17170.9596 62910.6768 23781.0159 28821.8433 23388.5713 69938.3224 22164.1652 43515.1022 15847.0693 18135.1053 45706.7576 30634.1612 35319.2573 406976581 nhh Organic Remediation Aromatics Nitoaromatics uncultured bacterium superkingdom:Bacteria; 13978.7344 12083.9518 12707.8731 2807.7905 16368.0512 18741.7591 10717.3233 12738.8508 8475.7413 180772.0353 8901.0874 12474.3939 13195.1486 24672.1249 24672.1249 4480.0423 20710.6618 14115.7729 10319.9168 12317.468 7967.8203 36858.3291 6192.1093 15146.4362 13601.0514 52653.1472 19173.5289 13838.0922 8204.8173 13465.8288 9416.4732 17071.3194 11998.8432 226953418 b_lactamase Virulence Antibiotic resistance Degradation Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4771.9126 7824.4684 14213.2877 5429.4874 3337.6637 38401.4806 306258.9741 22216.7961 3218.4437 4613.2348 4613.2348 3430.4207 6675.9077 5432.1402 4458.2333 4474.7582 4535.7497 14160.6366 7536.7711 10313.2632 4750.5202 13499.8207 4752.1661 4741.2455 5401.6488 2594.6746 219939239 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11719.445 10142.0716 7612.4998 5471.7795 13025.5211 55237.2038 11558.1752 11083.4699 15053.9378 8262.9983 430820.8222 21641.7117 19272.9832 14954.1961 8177.9123 8177.9123 11325.3275 29314.1833 14525.0399 23326.2177 19382.1814 16740.9163 12664.5307 13161.0288 31943.8877 10287.2919 30245.1946 20216.5088 23269.0691 6103.9888 11258.8391 13265.058 7185.1291 26858.8069 294637680 nrfa Nitrogen Dissimilatory N reduction NA Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 13242.2317 12919.7547 32078.7979 13862.7971 9440.8211 6453.6721 4191.8237 7726.3882 16913.5652 140389.739 10071.4177 16997.1096 7474.0662 4741.279 4741.279 4364.436 20493.2219 8704.6408 18299.6838 7056.0065 4920.2923 7047.2664 5238.3191 7762.4391 17822.1467 33308.5664 12141.4721 11117.2049 8752.7223 6393.3724 12983.3492 12339.6599 13655.7639 330992914 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 209339.766 36920.8807 63036.2536 59687.4473 78237.0958 74726.9475 100119.3653 64868.4774 1480994.1302 95640.6987 121387.5111 87199.6734 75497.6479 64611.6425 205724.2054 135989.0842 95412.5503 44503.11095 87754.6048 85586.4117 229464.6393 62018.7799 134607.2107 296186937 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 6085.6438 3565.4226 4763.1111 63272.6605 6013.487 7253.5432 5544.5645 4812.9711 2467.9859 4137.5262 5428.1841 5825.0036 3526.5447 4222.2573 2729.9004 507854 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 10840.6029 8875.3022 5461.4454 34136.8866 5884.9717 6969.0492 321135.964 9990.6629 156770.8315 11185.7116 11347.1499 26968.0867 13398.9453 13398.9453 6904.935 21489.171 13623.9369 7539.4345 30029.4475 26311.8539 5510.7743 6907.1395 16768.9672 12972.6932 31775.1177 23812.4001 14972.8658 6366.2695 6521.3838 16345.0173 5604.4785 16186.8503 345092011 cda Carbon Cycling Carbon degradation Starch Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 7089.6718 881914.9507 4177.8561 3061.5361 27273.3511 10713.602 10713.602 4698.1449 5675.9345 59288.8972 4860.1736 3371.5643 7242.6085 4703.4618 3572.635 13944.2211 9493.4481 73534068 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9886.3745 17077.8218 6144.4278 34861.1935 4666.9706 16615.7814 72718.0057 20522.5638 154370.5343 4761.75 35667.2434 7742.7455 9676.1662 9676.1662 11823.1945 20906.3343 12017.8365 47236.7998 6948.8146 10796.9909 5854.0702 11164.6803 16028.7612 16519.2363 121397.9509 30955.1674 26788.9823 12348.5733 17558.2341 26651.7473 4684.8978 10354.9288 302680352 phytase Phosphorus Phytic acid hydrolysis NA Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 256547.3963 38599.291 9129.4104 3111.7682 10130.0061 82274.9617 10034.2867 8079.3799 8079.3799 16442.5895 4081.3782 45164.5394 8437.5802 2721.8966 24782.0088 10643.9133 5864.5658 6623.241 16522.9379 4108.5279 5868.7518 6644.0358 163258286 pcag Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 161805.1162 109708.6651 12557.0281 35858.9831 19238.8655 276183.5634 84465.4824 16395.0705 57780.2223 64927.8046 64600.467 572102.041 41666.5339 124196.4557 165765.1902 240302.113 240302.113 66941.9354 162545.1998 138019.3232 101644.9966 145811.0561 746626.6377 55387.3719 80646.019 70777.3142 62364.8732 541380.9008 63697.3251 80967.7229 40494.3121 90555.7033 65513.7907 35051.439 64413.9898 195931873 catechol Organic Remediation Aromatics Other aromatics Gordonia desulfuricans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8446.7851 26451.33 3830.2225 6288.7415 7658.7184 16389.1835 145296459 badh Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 95746.0809 11955.5595 20254.7468 52704.8361 66072.0375 32286.2827 44637.3607 56585.4524 33979.6187 26347.0846 78677.2014 33184.7032 648849.0839 42083.3064 47411.3691 49581.3506 53944.207 53944.207 75981.3455 59534.1329 39545.5605 43887.2084 97035.6478 48103.6136 27695.722 25967.2406 56014.1124 34266.3434 336214.0678 34509.6189 70290.8545 31768.1504 35540.0954 32006.8554 39748.9765 44390.7014 193086214 fccab Sulfur Sulfide Oxidation NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8002.6434 7612.1647 9677.2688 5847.9725 3001.5765 10064.8244 13365.2061 3958.5511 174216.7618 7404.0772 7303.9832 8326.4233 4663.1359 4663.1359 4572.0984 7766.1537 8505.0302 41171.9289 7989.3341 6774.254 3848.4434 6602.1505 11508.3544 3618.2022 17867.2741 9197.6167 9261.5414 5677.3625 7204.6224 6053.2253 4865.9214 11210.244 338782222 dehh Organic Remediation Chlorinated solvents NA Achromobacter xylosoxidans AXX-A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 8611.5217 8192.9188 20687.5589 127382.9868 4388.6665 4032.291 8358.1007 7453.5486 7694.2775 9749.5666 189879.0913 9116.9542 9462.4782 6153.6282 6847.5575 6847.5575 5551.5332 13942.4045 14093.6818 8037.1161 9616.1655 6769.4665 5899.4532 11020.2172 11834.6216 4722.4759 22923.8897 15284.4559 11266.3592 5603.6779 6148.0125 7798.9759 4627.9024 7536.8151 139478553 mer Metal Homeostasis Mercury Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 36159.6702 11510.8093 51557.2405 53888.2267 36213.0808 24957.2224 34956.7264 128518.4331 18826.6118 24879.5791 70430.1158 54475.2351 485368.961 62816.1979 45006.7928 66651.2926 34481.7411 34481.7411 22989.9433 46324.3804 38702.9449 97306.1119 46957.0452 103851.2555 51458.8136 23494.9122 44228.3944 27471.7172 91198.1903 26757.0772 53423.7412 72143.8661 28313.9647 25888.2635 16888.6439 42286.1994 291612497 FBPase Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 14747.9297 26542.206 4433.386 18943.4504 6763.8032 9652.0233 12237.3339 28058.9928 57076.1786 196667.5168 9248.2416 22176.1723 15526.151 16086.1767 16086.1767 6972.6095 120658.1816 11910.4502 9879.3493 18066.6718 11603.5575 6233.2675 8087.6016 17362.9547 66972.7988 39867.9901 30616.3176 25851.217 10000.0022 12450.2736 12366.5493 7722.8531 58033.5384 357052910 pme Carbon Cycling Carbon degradation Pectin Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 14240.6466 15966.7736 5614.3906 34032.5915 6193.6403 5039.3949 5707.3501 18935.8074 15776.13 8317.5653 25146.8086 297159.8532 26783.9958 13520.7177 15579.8297 29929.8661 29929.8661 7308.1723 26113.2658 12204.7043 15349.2456 10793.0108 17687.4313 8649.2574 21580.2283 20008.636 8810.5985 34573.2017 21974.095 15217.8893 6779.0639 8786.4105 16467.2846 12284.4519 13563.4037 354581738 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 6374.4376 3389.2816 26014.9587 8502.1636 15042.3532 4975.985 8494.37 7579.233 7579.233 3720.4134 9665.606 3301.6416 9981.8342 2808.7796 2454.8601 2531.1528 7549.5324 5506.8197 2973.9562 3222.077 4994.1366 6095.8988 269218802 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 11415.3754 8266.7271 5513.1802 21278.5731 8960.775 11712.3938 16483.9091 5876.7654 11208.8037 20989.011 15569.1758 264439.9081 9439.6421 33129.027 30706.7587 22543.5119 22543.5119 9044.6263 31134.3995 21957.2679 13084.2167 23693.5853 12448.415 36521.4149 13976.7686 18318.2132 12072.2957 52407.5165 23498.5961 30822.1748 10841.8836 17689.3622 25635.0677 70802.1155 10251.3586 373101360 xylg Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 46784.7451 261889.4318 18917.3115 12307.5543 30664.2737 7658.0079 10962.4218 16782.6357 7609.3563 6409.6734 13515.2478 16250.1408 190272.672 78666.4173 20098.8634 20042.2388 19345.2667 19345.2667 7481.9917 13225.1333 8071.9893 6907.9698 18538.369 8759.2986 5507.5106 10028.9927 34228.2699 5822.5611 18152.354 10678.291 29202.5096 6269.1013 21306.1994 8414.5896 5081.5242 6421.1117 304281792 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Arthrospira platensis AGB-AP02 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 4439.6796 24141.5728 4596.2635 2101.8313 5213.31 4719.093 108168.3484 7439.7717 6200.9324 11193.463 11193.463 53210.9769 6261.6454 5167.7554 34267.9984 4842.8155 14264.7785 24786.2624 18282.3957 3819.7964 5475.3982 7161.9871 4951.7628 365092044 arsc Metal Homeostasis Arsenic Detoxification Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4205.1312 20043.4613 13210.1462 7967.3007 2958.9005 14428.2336 84402.137 5364.1581 5077.6652 16038.0112 9524.4355 4116.6983 3768.9626 7396.8066 8197.2539 7615.2642 4251.1265 2500.348 18882.5469 3950.577 20187.1941 4386.2068 3346.1308 3370.9556 14459.9155 283472597 ppk Phosphorus Polyphosphate synthesis NA Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 7345.5357 15177.4471 3183.203 3509.4399 12940.0817 4732.193 5297.6505 4358.8483 89359.3992 5992.1466 5797.1174 5665.6153 3670.0846 3670.0846 7227.0617 8734.8864 5153.2483 5791.902 10030.6604 9114.3406 3638.2844 3427.4801 7653.1709 2934.2098 8119.5959 5432.5556 9153.9995 2396.8053 4516.4938 5354.1288 3007.3016 9675.8707 67524257 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 13455.3809 19122.9205 5932.2919 8727.1631 11199.057 4407.1828 5253.8099 8565.517 86454.7046 28465.8973 164485.0133 10834.9394 20594.0815 15127.4617 9272.8973 9272.8973 12507.2777 23978.2738 10642.2277 8348.758 14675.2024 7736.3325 8745.1645 46939.828 18236.0875 12667.5206 30889.3894 10443.9139 28239.873 5780.5685 8654.4702 22952.0618 6658.0984 12738.727 342316604 aoxb Metal Homeostasis Arsenic Detoxification Acinetobacter sp. 18AAV superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 17690.1968 15309.9669 7265.5654 28551.99 50694.0757 27948.6227 12264.8326 16232.7369 9901.0798 15975.7195 31049.0473 18111.3155 648494.4276 25468.4065 25414.6053 31224.0278 16535.0311 16535.0311 14276.8053 36995.2166 24645.775 23020.6994 35675.6062 17333.3618 12758.126 13628.2204 43139.581 13118.9154 49620.1302 36699.1544 38297.298 29519.7092 18820.4238 11307.051 9046.3752 116585.4203 153962710 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 27694.9184 25968.7449 14199.1247 17436.7638 66723.3376 5703.9278 11441.4739 27519.6939 8610.3372 16705.2493 22054.1768 52113.3374 658076.0573 18263.263 32352.641 28807.2321 15815.0629 15815.0629 13779.326 48153.7651 21193.5253 31693.9578 29695.125 16998.8335 18255.2792 14168.4263 22824.4077 27261.5258 103093.9373 25277.372 37019.6963 17731.705 20104.1208 32475.0727 86188.689 71540.0653 157285606 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 21999.2642 24388.3074 12175.4823 11793.6563 46083.9829 7787.449 9019.2508 17250.6094 17326.6865 11441.0015 237326.7598 10217.6808 27773.8053 8993.0505 14497.484 14497.484 16044.9923 56421.9889 26349.3749 17904.9367 24127.191 24474.9406 15490.0433 21148.9776 115364.6069 8696.2487 31775.5965 26071.4104 23988.0553 15661.9186 33430.5752 16755.3418 13765.8247 26190.6982 77698229 nosz Nitrogen Denitrification NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 197793.2386 16497.8219 43098.0488 56370.85 7693.6267 13741.4198 12994.2476 12132.5569 31370.5489 104635.0776 37226.8192 343067.3452 39343.8383 29622.4457 49334.2625 31259.291 31259.291 24521.156 53240.9927 82003.9316 17722.7906 83175.0728 24330.6478 21421.6481 16267.6393 32865.6377 39650.8233 78070.7862 61423.5223 65841.8937 19761.3581 55299.8007 50001.4113 75961.1561 67853.173 310801488 rgl Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 4503.9267 9441.7367 6906.5154 3085.8888 4297.0855 13474.4275 80887.3156 6735.3066 7908.8514 5574.058 11235.5962 11235.5962 3976.0591 14160.746 16879.4061 9278.8205 11979.8974 4551.0107 22282.0283 26327.6362 8529.0299 12989.5931 5170.7922 8022.3567 2123.0204 4023.8339 9190.9652 4553.1994 302325819 atza Organic Remediation Herbicides related compound NA Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 39128.7896 15787.6925 53647.8577 37283.3413 9951.533 4577.1346 20990.4824 73905.3355 26474.614 22009.8017 41839.9379 23943.3632 851328.1267 30959.8105 30446.8474 72795.1865 32671.5404 32671.5404 16600.3932 43249.9934 26778.1759 54472.601 33494.4404 46712.3119 13724.0217 16565.336 37213.3094 18515.3704 61401.875 26115.3869 33298.2005 74391.354 49914.986 28990.4092 30227.8351 39970.9704 384148072 chitinase Carbon Cycling Carbon degradation Chitin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 29382.7727 22637.2299 18471.7925 22811.8006 7105.9913 13281.8982 18604.4869 26541.5046 16284.0344 29011.3759 19843.9117 274259.1768 17396.2165 121655.619 14559.2465 21243.1544 21243.1544 16872.498 38131.0956 22873.8762 27061.098 37008.6003 32111.2889 13982.494 18547.8645 33948.0625 14997.5456 66061.5452 60922.2688 26818.6142 11753.5395 20866.3411 38468.6118 18844.5081 27128.2542 346312270 amyA Carbon Cycling Carbon degradation Starch Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 48012.9476 24901.7749 873293.7734 15942.193 6381.132 6696.8474 11515.7844 11408.1163 24522.2423 12504.8312 166132.5409 8471.613 82590.3257 12947.7635 73412.6627 73412.6627 6696.5649 36821.2316 74762.1808 29024.5514 19498.5147 45881.6321 10694.699 11878.1222 8941.6993 9139.106 39267.4964 33516.0533 23629.8382 9512.5163 22630.7364 20713.7508 10798.5122 14378.5821 329301870 nfsa_2 Organic Remediation Aromatics Nitoaromatics Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 4621.6109 4213.0785 5407.7393 4201.49 81225.3662 4551.3025 3178.4554 3178.4554 5955.5592 4113.9689 3811.362 4902.4243 5572.6302 2864.0963 2317.7735 6656.8921 3402.5528 10981.2001 3868.3081 6460.1774 3479.0258 3076.3743 2950.4889 8056.4378 53803124 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 6882.5678 4446.0122 4572.2533 7212.5313 10686.5621 19015.4513 113387.3875 4493.9842 10772.6306 4695.1135 3525.6202 11571.2401 6100.367 10021.7086 4312.9111 8606.8051 8871.984 9150.4858 22509.2408 6101.8634 12809.8743 3574.2499 6271.8825 145240.4915 47720.7562 6397.3862 45386161 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 77413.2556 26371.0193 30862.6628 73168.4926 46082.3251 22188.101 224025.7895 77262.8659 47026.3403 74858.4198 138337.1677 47065.0596 1152124.2833 93345.3449 126292.8781 76861.784 57460.3845 57460.3845 36650.6067 161539.8832 74418.8074 46163.0169 208832.7389 305261.848 34965.0337 110064.8455 57278.7595 80817.3866 147637.3685 78952.3899 60081.9364 44505.3739 58874.0646 124210.671 45976.7751 88121.104 226227000 gdh Nitrogen Ammonification NA Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 10989.9765 8644.1245 8203.0852 5206.5035 8532.946 9363.3971 7975.0028 5373.66 14972.9378 6310.3848 159958.0631 9979.1387 7100.055 11338.8796 4826.0786 4826.0786 6469.8354 56763.831 12365.8454 10765.8353 17242.3775 5542.8227 7987.7468 7810.4569 12048.7538 4317.2425 24905.687 11210.1396 14399.2362 9825.7184 8837.986 9821.2302 7795.1885 10286.5558 294338570 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 3994.0489 2876.7682 2008.2237 2008.2237 33099.222 68664.8146 2713.0998 3677.8476 75993805 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4603.1913 3478.7211 4758.2048 9469.8405 6256.4752 16152.1019 4522.4241 4522.4241 7519.5329 7503.2984 158158.6344 6067.3173 7836.4729 5160.0174 5499.7326 2214.851 6752.9393 17256.9662 5376.3696 116608903 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 25504.7177 10468.2087 17389.3792 19234.5279 8817.8834 12425.3588 43773.0688 8683.3211 19110.3599 31143.8858 15325.4154 440457.2771 25232.1757 19306.3737 10884.0611 17548.7174 17548.7174 15482.8024 34489.9008 20739.3938 19023.1823 24116.208 23527.9544 13221.7762 15008.8582 23785.3252 12516.3016 37521.71 27627.5556 24074.5439 12294.0947 15503.7571 19776.5581 15887.759 29658.8523 322416750 nfsb_2 Organic Remediation Aromatics Nitoaromatics Succinatimonas hippei YIT 12066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae;genus:Succinatimonas;species:Succinatimonas hippei; 5202.9583 5590.3088 5616.6853 4982.6851 4417.1523 7576.1606 8625.0578 5257.4915 184500.851 9436.8841 13662.0565 6203.0352 3910.389 3910.389 4953.6262 16893.2917 7303.79 7171.0741 8188.846 11986.2113 2471.6796 4978.92 13013.1957 4052.8091 16704.2796 10803.5032 3221.2777 6221.3439 8601.9267 3789.8805 10326.5104 294649765 ppk Phosphorus Polyphosphate synthesis NA Acinetobacter haemolyticus ATCC 19194 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter haemolyticus; 10901.3205 22571.7414 12419.41 8167.6265 7191.0772 7601.2264 13046.0489 13933.4073 6890.9381 1717989.4863 11261.8521 10619.4216 10192.9959 13461.9552 13461.9552 8838.025 27046.4811 11723.8916 293465.7523 23561.6707 10834.2824 6994.3872 8584.4481 15353.0726 12720.3374 31972.4183 16930.9916 18331.7105 8359.6124 9914.4294 10950.5551 6716.812 18564.5281 386923289 pcpe Organic Remediation Herbicides related compound NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 6244.174 18880.1733 7048.054 59725.9169 6033.6378 7322.0038 3272.0457 14281.9807 5988.5028 6908.5463 4457.7608 4457.7608 3633.2354 16591.7565 6155.1882 8403.5927 6347.6017 3517.4593 12525.042 2868.5104 16421.3711 11476.9065 7224.1889 38321.8588 16105.659 6588.2087 2462.1445 328906815 amyA Carbon Cycling Carbon degradation Starch Propionibacterium humerusii P08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium humerusii; 16552.1348 9007.291 3114.761 3970.7627 4013.1709 3496.2945 10589.4787 2381.0848 80391.3818 7181.6622 4185.4571 2448.9461 2448.9461 2976.1063 12376.1811 9502.673 6238.765 5273.6344 7483.2691 2713.3987 3722.574 6961.4486 3233.6789 17250.7007 6459.0005 6979.5974 4839.3299 3981.5707 12668.9914 4732.5626 8882.0194 199594029 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23970.8377 8150.3167 4178.7121 9763.5049 4602.7018 10469.4567 3637.1548 162175.1847 5664.8033 10695.0507 4911.7575 4911.7575 5218.1461 11834.633 11960.0688 9714.7193 10745.7581 5941.2301 6566.7014 14841.4623 4626.3788 17405.851 15545.5087 12588.2868 7003.8475 6361.7234 15841.7989 4154.2786 10877.1438 60476012 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4739.5753 11894.3724 1913.9152 5624.4094 26219.1095 72534.6613 9001.0513 5319.2837 4971.0049 117873.2726 11207.7151 11207.7151 7512.0389 25009.6543 4860.8537 41206.4325 7087.3372 6787.2078 10465.8339 4441.7653 7728.5928 44959.026 33015.7562 6923.1427 85184.9784 2598.411 9580.1312 17045.4359 5353.659 7445.8776 295440743 cysJ Sulfur Reduction NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 446784.1554 111670.5631 953239.2355 629212.5263 1290794.9223 139605.1045 336279.4616 397428.4319 333494.4165 295625.494 298093.674 255124.3257 6003493.2474 413850.7895 773363.0833 1869930.0788 494016.0579 494016.0579 253525.9265 463627.8968 222966.3238 848126.5808 377179.1779 665389.1158 257672.2327 212817.9064 432993.8406 238379.4667 751759.69 320652.34 381598.0503 345615.7082 300136.1582 337049.7754 298792.559 585651.2402 374986961 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 29243.652 28401.2533 35532.3119 6474.0758 8579.8801 8596.0959 29982.202 22154.7221 38610.2943 402223.8301 19880.55 14398.0925 31253.6689 68903.5003 68903.5003 13862.2811 71076.0232 23911.719 22097.7502 35434.8721 28487.3022 16486.3637 27081.8604 16004.0627 17761.1871 102319.5723 66925.2021 44791.8041 10773.4901 32856.5388 25337.086 59898.0683 38899.5099 139478485 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 8789.9835 3213.8667 5161.1853 3589.33 2873.6001 2280.5413 10648.801 5732.1236 91786893 vana Carbon Cycling Carbon degradation Vanillin/Lignin Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 3972.3587 17849.9935 78734.5064 18209.8641 6601.373 9204.3879 73099.047 13191.1651 52355.0717 4790.7367 3926.1041 3926.1041 4738.6421 12667.3708 7837.7433 4720.6407 19877.1636 6834.488 5695.2284 9582.225 11987.4825 10838.6222 27396.4728 12008.6899 13770.4283 11467.3118 18799.4414 6648.4563 3208.1164 218356377 catb Organic Remediation Aromatics BTEX and related aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 41541.596 13338.6384 21883.6347 38806.7965 25345.4686 19294.6692 152369.8996 31678.9552 205361.9599 30521.0514 47681.1851 16473.9088 931007.2352 42764.1026 34224.2775 65362.4016 43977.3323 43977.3323 17144.2642 37575.527 32400.5799 98607.1817 29063.5079 45147.0476 15132.7316 25050.7693 54321.2088 16251.2436 60418.7041 24618.2413 48887.6923 17004.4436 24774.986 28985.4193 42883.4961 41543.4753 333763703 ppx Phosphorus Polyphosphate degradation NA Megasphaera sp. UPII 199-6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 5053.1608 26109.4527 3336.1111 5372.972 2286.147 3915.0339 4354.6415 3650.063 99394.4793 8699.5513 4083.0774 4140.63 4140.63 11631.3323 8306.8506 4809.6432 3905.4236 7984.0129 3168.3277 10774.234 3494.8922 10983.8305 5567.0225 7672.0174 4338.3879 3874.4456 4545.5869 4719.1866 383459636 urec Nitrogen Ammonification NA Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 28122.4446 39361.5826 22665.3687 10933.4846 26484.1634 5741.394 22150.1125 32947.2637 18247.8904 24896.5823 27533.1419 32861.3853 597543.3522 22749.5987 28751.9874 22100.8578 19571.0198 19571.0198 14699.9265 47894.1183 20392.2112 47348.6904 27110.5971 37969.1126 22824.6553 20642.2053 22303.6157 19788.333 72845.0763 26190.5642 30195.642 57716.356 20411.9577 23320.2995 434808.9223 40849.1593 355361449 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 11625.894 4823.1474 2919.0658 24019.8362 33923.5726 3533.7228 101759.0258 6915.8595 6619.8483 4224.1343 4020.5365 4020.5365 4742.4745 11200.4187 5173.6974 12314.2891 6395.3498 3932.7377 5786.0458 6874.9087 3675.9062 15853.2456 32935.0573 8157.3606 4670.6615 4986.6314 6695.8389 4224.0304 6025.7909 342809905 atzb Organic Remediation Herbicides related compound NA Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8464.6204 15337.6815 36015.6448 12553.2914 9242.2794 8894.911 6730.0996 8934.8383 5673.3 341425.9064 19528.5829 10774.9944 33243.3837 17594.8033 17594.8033 6125.7312 27956.6562 10335.0049 6867.103 35939.2997 7810.5428 5106.0769 8317.016 18916.8401 4506.1225 26093.2143 15098.0524 25671.1952 5626.1548 10912.8178 10500.8222 6717.255 15261.5324 374367281 catb Organic Remediation Aromatics BTEX and related aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 4774.4999 13216.6671 6599.1196 4092.3685 4375.559 72749.6053 6449.0196 4249.7902 4249.7902 10878.663 6750.127 28046.1138 12021.6468 12585.6319 6960.8857 18157.6644 6006.8213 13132.0993 11843.9522 3493.6651 4339.3722 9878.4717 2492.2096 16501.0209 257486120 urec Nitrogen Ammonification NA Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 370052.4448 44729.4966 171356.9516 682602.6102 335606.1229 151030.7987 223549.7302 289572.5527 227794.0646 165006.0214 225386.6035 185055.7731 12155730.8412 294852.1761 314996.6157 548327.0903 460690.795 460690.795 206994.7019 301918.561 264014.8324 424262.152 430034.3322 411821.2268 162069.6582 312469.7549 274463.3238 177736.0457 530306.2747 213885.4059 301162.5103 127197.8778 218527.1064 246982.4166 153220.9954 317804.1538 324987965 amyA Carbon Cycling Carbon degradation Starch Prevotella multiformis DSM 16608 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 18996.4213 13676.8853 14864.2248 9189.7668 11919.2595 11035.4316 9319.0029 14516.0669 17774.724 7042.2545 358862.5104 14897.7312 20184.3691 8489.5458 5373.4872 5373.4872 10159.3561 21659.4048 16115.0669 15061.6563 19735.1596 37216.5125 8671.562 16358.0426 18641.3695 28504.4965 32111.6415 15466.909 19974.881 10850.5533 13811.6657 11015.8279 10969.2964 24648.8875 166711826 atza Organic Remediation Herbicides related compound NA Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7147.5743 10629.2231 4495.2634 10469.2526 4389.5614 71025.3124 12981.5223 6747.2758 6671.1851 5985.6772 5985.6772 4506.0605 6878.0191 4303.7031 4882.9001 24954.6856 5558.0804 3288.7641 5622.1696 9399.6556 3301.3267 11149.1568 5184.2483 10572.0531 3588.2587 10820.0709 8163.082 4101.1247 6675.833 116743209 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4696.8266 14984.9232 10976.0168 5487.3339 8413.1446 4442.2372 8365.8155 3336.0114 86490.2493 6986.1658 7048.0206 7313.8544 3704.7794 3704.7794 20729.0214 12614.3368 7156.1434 5167.9595 10298.5031 5543.6482 5078.5223 11088.8086 5344.3026 18236.0446 6120.9354 11755.9457 2475.9093 5913.1441 6275.4545 4046.2021 7151.9932 163796218 cysI Sulfur Other NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 4506.3298 7147.503 11436.8762 3720.1091 3646.8848 6642.4147 13983.751 6502.5113 10623.2337 10623.2337 5819.8911 6554.7472 6007.6621 2347.3736 2859.6276 24374.1007 6802.375 6271.2441 3207.6744 4115.4949 9223.0826 2566.5243 5293.5438 193224395 cysI Sulfur Other NA Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 47678.2032 12373.8673 22251.3701 122220.4265 26015.7112 17493.4433 134230.4027 21499.6721 31838.3875 65845.5351 42531.524 689277.2075 44497.135 231909.7465 62136.5524 30983.7683 30983.7683 158324.4315 60040.1756 29138.5628 45339.1341 42851.3747 78869.8104 26383.7782 25567.4491 67326.487 32298.9958 104588.9889 53939.918 76499.2497 28233.6657 40864.0607 68186.5526 35179.8552 33134.91 355537128 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 19661.9684 4899.1131 10224.6161 9300.2977 4394.8787 9047.7538 6359.0656 4295.857 7779.7451 27852.9405 162278.3974 5305.5161 10212.6812 35478.3216 7647.8273 7647.8273 2855.1925 10936.9374 4308.7638 8419.5546 10548.7744 16834.3298 3459.4081 6424.0797 14032.5263 3415.9287 29750.0723 5000.9902 16029.5194 2606.3128 6719.4835 18598.093 7213.6343 5782.8604 256395125 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 4306.5944 14852.9885 2872.1162 3113.9445 3517.09 60445.5527 4873.2101 9167.6738 9167.6738 5863.6716 9509.5963 6481.7604 6600.3455 6962.4865 4397.0659 3632.1149 2799.0465 4290.9561 64397.2695 291530736 amyA Carbon Cycling Carbon degradation Starch Eubacterium siraeum 70/3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 641684.2439 6188.7154 22960.3605 302460003 amyA Carbon Cycling Carbon degradation Starch Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 10898.4435 6155.3476 564832.8973 26183.8229 32853.013 31726.4565 17016.5334 9622.5662 7694.7181 8679.1559 215548.7994 12247.1656 8026.0358 13530.7668 25116.4456 25116.4456 7493.2856 19481.5271 9224.6288 9672.3242 70932.6414 11932.9294 6735.3135 6476.1512 10086.3294 7016.0888 20882.5489 10877.8358 14305.1755 5230.2177 8091.542 8503.4716 9664.5228 19759.9493 87199696 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 1180815.9392 37889.3305 25725.2935 7658.5911 32936.8684 14197.6956 29504.9616 18095.8318 38026.6717 57792.2038 3200818.8342 48240.3745 35241.0547 63177.679 89857.3066 89857.3066 61469.0501 123128.5808 53116.9054 111569.8776 84908.5122 90868.3724 44390.642 90295.6067 35728.2367 35761.5598 147711.4938 48492.5039 70449.1099 37453.75 26094.5903 48126.9975 55934.6673 56002.4233 84497846 ppx Phosphorus Polyphosphate degradation NA Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 24129.8107 8355.2727 12266.5272 6035.2233 5483.8213 2297.0188 11397.2262 45835.1905 7655.2714 100285.5058 10377.4069 12543.4871 5302.4646 10077.7705 10077.7705 5325.0012 23089.4223 7350.0524 7240.5446 32798.8543 4157.7925 8668.9594 3847.7811 6368.8503 5731.1853 91726.0962 7729.9862 11687.5524 4852.256 5786.5864 5922.5512 4994.6969 27673.6901 90903261 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11193.9708 9058.9399 6643.8766 6066.2373 2377.572 5457.3665 5759.7701 3023.3935 193735.0757 8624.0498 7102.0066 4479.2755 4046.3633 4046.3633 5233.2083 12935.7454 24510.4993 29402.8488 6857.168 5225.4798 3620.5597 4961.0519 11692.0724 4889.6084 15869.9111 57145.2199 10762.6721 7658.4668 7556.791 4575.6784 7261.3044 9122.0251 40068453 protease_serine_fungi Carbon Cycling Carbon degradation protein Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 21518.1307 274276.8752 15061.2948 89530.9749 16644.3824 2460.4714 32549.4398 17044.3825 10696.5968 18131.3329 19560.2503 272888.4322 29723.9118 22186.5051 26611.8676 21592.3406 21592.3406 10003.8336 38743.3841 18652.9034 19767.1126 30962.4913 17509.8978 9983.6077 15010.4074 25092.2073 14702.3477 62985.9233 26868.9141 25341.8734 12591.9186 13754.0395 18184.0985 8610.3085 18257.1771 284448033 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4999.5852 2995.8232 4443.8805 2701.8548 7380320 ppx Phosphorus Polyphosphate degradation NA Neisseria meningitidis Z2491 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 133387.0205 16738.3455 34583.4872 137971.95 52531.4246 40072.2203 169566.6322 41582.8556 61505.5483 54504.4274 222172.6891 81459.1804 1238266.9182 98172.8628 87472.4774 207046.1532 62094.5725 62094.5725 62790.4256 59984.252 33136.2888 125730.8379 138349.8677 76215.3325 63211.1514 73935.9343 79386.5351 54344.8768 153568.095 69285.6459 312966.9849 41354.3619 64998.5513 81828.8687 55874.9983 73184.2801 77379200 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 112025.7723 15419.1568 119411.7276 548755.2621 41395.9419 29494.0136 72742.6169 107712.6349 69312.4922 195757.9565 113208.5002 91108.3337 2988144.508 102344.0616 103646.6789 91468.3738 238196.501 238196.501 64407.8446 167991.468 72137.5829 207591.8777 153317.6043 142332.4392 89532.8332 64861.6453 84679.4648 117819.9178 293819.4222 39887.1162 119645.6267 50973.1936 121480.0041 103446.9049 101915.1745 172515.5645 390433224 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 4299.2786 2656.043 3385.9717 115765.6219 4336.8576 4993.4762 2490.1596 2490.1596 9325.8765 4796.974 4022.3969 4429.6336 4133.2683 2588.1269 2487.0336 6344.3054 4485.3011 10771.9435 6577.2571 3039.7918 4905.2241 4075.4994 15087.092 8913.1627 390450040 amyA Carbon Cycling Carbon degradation Starch Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 9913.2802 8301.7775 12650.3425 91178.2475 6281.8938 3645.2726 8124.4756 19060.1159 4450.3186 93472.1816 4551.8427 82470.1974 4896.8423 8178.7631 6952.0943 7201.9289 7201.9289 33273.3191 17544.8199 9123.4781 14351.9232 10012.1598 10680.585 5305.9683 7125.6982 10308.6394 2980.7978 18329.2538 32457.9255 44366.9149 4933.4948 8361.1354 8396.5111 4040.5113 5577.0946 310643441 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 60231.7671 20324.0311 24129.2572 20767.2091 22228.4274 7994.6902 43275.2207 38063.2748 26820.9938 68222.2456 48607.1052 28700.8406 650333.941 40512.1215 64808.3485 38402.7536 38559.1511 38559.1511 37429.4295 60971.9593 31690.348 37550.7426 51487.2918 100512.0992 35445.3848 24239.2291 39045.7747 54341.0948 84422.2184 23671.6127 39160.7267 17695.3487 31708.711 43977.9501 21386.6089 71027.752 327177902 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3750.282 6025.2524 3823.1264 9342.7728 2281.8014 4674.7111 7859.1404 319437812 amyA Carbon Cycling Carbon degradation Starch Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 41007.576 9954.4507 20933.1452 41181.4611 9198.1021 26750.4068 10120.5552 39624.3407 13466.7968 16768.2633 24947.7514 374048.5679 17616.4234 14680.7071 50340.4473 19443.1479 19443.1479 17938.0524 21017.618 16047.1757 16021.8287 31713.6702 37436.8175 9732.3301 12471.8184 20709.7743 10569.7493 41793.7905 18197.614 66406.4518 9006.4103 15883.1953 22394.6184 11776.3132 22603.4496 308433906 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 64646.5004 31003.805 22317.23 123631.8216 7492.51 21652.7491 56897.7999 31393.0396 31709.2637 106561.5353 63862.6906 561705.1333 32872.8987 45898.754 162449.3583 108312.3745 108312.3745 40400.8712 79552.9414 28715.8299 78788.7304 92610.0178 200843.3841 56615.0156 29238.5048 59941.6195 28132.9946 119185.7623 69629.2941 84500.1259 26341.1089 41110.9522 50020.4736 36271.4867 90419.7451 89352828 phn Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7967.8821 17047.1224 6269.6802 9149.9014 11813.9203 6708.0939 8099.35 5588.2649 3969.7585 8173.0813 9676.9859 5493.6054 121264.081 10808.9805 6983.7902 6279.7743 4690.5177 4690.5177 7822.7987 34931.574 9731.0892 11760.7118 14610.3481 19595.4645 4731.9547 14170.6462 12908.1768 4524.1891 18181.3165 8152.9055 11694.3454 3890.1204 9720.4767 7683.2526 7816.8881 15312.194 69279982 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 12508.8579 6708.2309 10959.1231 5629.9807 3809.9269 9784.0668 2969.7512 13391.6019 56770.612 6088.0498 58344.8441 2761.6491 2761.6491 2733.3041 16089.3658 9855.5688 2277.2975 5920.7405 12187.8431 28397.4778 16498.8064 9838.9183 7314.1297 2076.7049 3363.7633 4213.337 3995.4869 386815449 soxY Sulfur Sulfur Oxidation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 5436.6546 2800.6838 2184.6698 1997.0864 3978.7007 4887.1224 4667.5843 85013.0197 4360.4854 4459.0726 2088.5392 2088.5392 3093.8467 12287.5761 5494.3391 5212.7122 7149.3624 21789.9924 2843.4002 2194.3909 5497.9612 2605.141 11679.4917 3817.1761 8983.0357 3633.7204 4991.0856 3529.8968 2441.1332 5920.7753 384084817 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 80350.2154 1689080.263 431309.6797 10823.693 4491.3146 8214.811 5768.6043 4586.1547 3094.7896 107748.267 6566.5196 8259.5364 7689.8375 4016.6021 4016.6021 7076.6494 4964.5667 23490.9436 88612.6413 11898.7546 6339.1829 644820.6536 3226.7068 14800.7792 32862.8193 9277.7116 16166.1363 133831.5471 5667.9223 2541.0763 18888.7354 124260305 arsc Metal Homeostasis Arsenic Detoxification Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 27183.0289 11387.9727 15362.0228 5668.1229 20725.6808 10519.992 5413.5398 14339.3252 9409.6686 399769.1674 9818.7681 35419.6104 24018.8778 9116.4801 9116.4801 6552.6086 20908.856 18472.0069 7686.483 133606.2501 16684.0472 20663.5661 21587.967 32637.3424 25375.6828 105973.3096 35255.8153 23499.0444 9327.5233 16479.5433 24107.9029 16834.6021 48894.7329 75677113 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 15307.3261 12547.6116 24480.203 6017.2647 8077.5067 8768.1455 6293.0847 10379.8518 27158.4817 15624.5368 250316.482 10804.9951 14565.7377 8734.5683 16497.4706 16497.4706 8392.8165 16112.3565 6907.7804 18533.8353 10893.6176 9098.2112 6731.8879 14710.8038 8316.8264 22103.4835 34756.2194 15792.3042 14712.4619 7430.6718 5770.3393 62429.7933 40645.3263 13786.0264 558708 glucoamylase Carbon Cycling Carbon degradation Starch Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 6352.1391 6697.6457 2306.7424 2868.0831 71789.1413 4152.2043 10026.5583 4775.0995 9683.7234 5793.2538 3028.2248 9510.4205 3724.179 7258.326 6840.5152 4362.6236 5967.9391 77965235 proO Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5636.7726 6758.489 7955.0685 3225.7188 8547.1482 8891.3767 4046.1263 91510.0353 9829.3947 5840.4952 2123.9948 2123.9948 4613.3344 10542.9469 6636.7926 6371.0055 2738.3036 3289.8838 8485.4886 3761.0175 18337.8409 7623.2644 7891.1849 4174.3509 6924.7283 4665.0359 4870.9227 6540.806 73660244 mer Metal Homeostasis Mercury Detoxification Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 202416.9736 15957.2879 19567.4969 69114.2837 22930.1421 19265.1435 36376.4956 32745.5464 31417.5257 41636.2562 34075.5161 549948.8945 103043.1549 24340.3144 29001.3408 16710.5808 16710.5808 36063.6765 39825.6681 28848.8527 20575.0132 38722.7709 41914.0797 13309.619 90732.3708 32257.5568 14362.07 47049.2788 19496.5587 36037.52 27208.9334 20502.7381 25187.0487 14847.2557 32543.028 45386135 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 40039.2114 12836.715 13372.4468 64942.8749 12703.0985 3962.8966 7127.9271 30730.4193 19186.1368 16655.5043 729491.4825 16049.9967 22324.9017 23486.8363 59258.4416 59258.4416 6587.6387 50856.8885 12609.9074 34716.4853 74408.9314 11095.5988 15542.2646 12052.6879 20324.5212 8901.1009 103990.388 26898.3912 26284.2508 27377.9843 23618.0042 19786.427 9573.6445 19319.1283 164598122 exoglucanase Carbon Cycling Carbon degradation Cellulose Clitocybe nuda superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 5798.0289 7198.0888 2726.9899 6775.4368 4685.25 7031.3214 93866.1013 6239.624 3750.0838 4331.323 3502.2539 3502.2539 2846.0695 15290.0096 5953.0097 6872.6706 5187.7697 3686.0457 3652.9374 8422.4671 2230.9742 18950.3127 7013.238 13558.2741 2446.0818 13660.9137 4389.2698 2252.67 8059.4146 225682022 endochitinase Carbon Cycling Carbon degradation Chitin Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 15747.1698 10470.846 10936.71 12482.07 10750.7687 8206.1009 5704.1043 12112.654 14002.2184 7276.673 247666.5262 15995.3849 13433.182 9383.4014 6497.6911 6497.6911 8971.6429 20417.2496 14971.3278 13320.6387 17796.3513 29528.5739 8839.9362 5960.4733 17273.3752 8047.1156 28354.4976 14613.5346 28670.0095 10107.0958 9588.247 13541.0859 8709.8081 27001.6426 335340806 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 612233.9066 97541.3974 256404.9587 237440.0582 1325349.7548 255338.1715 312336.6662 332496.2939 326412.0934 300312.4223 373689.3628 226919.7109 7719995.1728 409900.1081 369551.9251 534753.3265 332112.9689 332112.9689 200173.9317 344725.3627 213527.0142 365047.2476 438727.5036 977484.3337 207392.8249 188936.919 330274.7014 310216.3676 933503.5333 407745.8939 322861.718 158861.4891 239682.2018 265181.652 198833.4546 274630.8529 392720718 pchcf Organic Remediation Aromatics BTEX and related aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 26574.3948 15181.6035 8529.0013 5393.5713 5221.8933 9525.5284 8654.9327 14055.3071 171251.6015 6983.3713 12432.8131 14291.7976 17194.0843 17194.0843 3749.632 20887.1386 4663.0797 8634.6111 4814.3982 9265.8367 9292.5458 13738.6703 10521.0817 23480.7851 14875.9649 14992.3095 14266.5151 6181.0548 15436.6867 7614.1547 119962016 ppk Phosphorus Polyphosphate synthesis NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6722.5927 9214.1661 5032.5852 16774.1763 13562.3267 3832.5356 7789.7128 5764.4334 6120.0875 147039.6806 22172.4379 7100.8025 10719.8512 7745.4273 7745.4273 5734.026 17936.365 6759.6167 5260.3014 4024.1741 4620.2389 9575.8023 14830.3501 5039.4154 15592.2709 9030.4502 12537.7695 4105.4469 5360.6258 13079.4441 3002.4057 197716123 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 5581.98 15161.6815 4694.9885 4787.5518 3072.6155 10731.0613 4324.3101 258041.0209 5268.5266 6368.8061 8986.0677 6745.6671 6745.6671 4197.6943 9099.0391 5908.6882 15195.607 4101.1765 3338.6593 9051.4079 10768.0476 3377.7324 17926.3235 8438.4694 13781.3953 2459.481 11328.7166 4436.1603 9378.451 299527018 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 183663.1534 43723.4757 31247.0123 29112.9584 36851.4783 13777.5355 29956.9034 49712.1736 11623.8427 32743.4242 101623.6155 81480.7628 590327.9156 184878.2672 67856.0532 154446.6726 57871.1012 57871.1012 32596.9586 102968.6449 61132.1829 37500.829 64241.1014 43823.0415 115263.0726 36051.3329 125971.9256 43948.5993 116294.2649 66893.7164 57744.8317 64873.7537 45636.966 55860.2521 30585.9675 33466.1321 117675715 ppk Phosphorus Polyphosphate synthesis NA Cryobacterium psychrophilum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Cryobacterium; 20453.5116 22576.4089 27722.5744 35967.4284 63150.0765 39684.7633 15807.0476 28525.442 9853.3941 25342.3197 23823.9597 22137.2282 624148.6518 25144.8522 27656.865 29498.6823 24454.7794 24454.7794 17394.8502 29503.5588 24910.7247 41886.5479 24331.1662 35901.7865 10087.9571 29628.4446 45684.0017 24252.3827 42080.3053 34606.2084 47882.1386 30616.0818 20141.4432 20492.4237 10362.4479 30809.3031 365421592 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5482.0037 23459.3968 4413.9086 44328.7464 13094.5147 16772.3811 9204.0334 16268.9363 15596.6972 12436.9226 98894.9538 8593.1843 10347.3824 14093.9787 10399.6926 10399.6926 4115.8567 41151.006 13154.8001 6998.6561 9926.5608 4640.3796 5481.8484 10706.2813 7452.5254 16126.0781 27928.8909 17110.5221 20360.2479 5022.4782 11084.6881 16668.4181 31929.9471 33172.1993 4204206 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 36178.2836 11800.6173 61834.8253 22262.2173 42840.0765 19793.7421 4361.5584 18287.0439 80522.7806 6535.4829 17263.4345 11526.8255 237178.357 18332.3191 26177.7679 21777.9375 16255.0498 16255.0498 22042.5709 17912.8925 8925.6122 4805.6795 6816.6817 6586.2648 6334.9427 21368.2284 28933.7407 7953.8453 18270.0115 18258.7173 24959.2733 8279.474 12187.2436 27472.9433 7594.9118 9379.2851 315494590 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 282677.3876 23628.3002 564977.7211 102903.4517 348465.6002 32859.7534 185571.1114 109398.8835 454685.1723 118709.9249 124942.0351 125628.8078 2866386.7369 147184.0845 194627.3326 480828.6679 173099.8009 173099.8009 84593.5162 185239.2777 135270.7052 356485.4138 419105.777 330145.899 104633.0003 125660.5549 153777.1418 109368.6793 366473.8364 194827.3629 168012.8583 102041.7245 154676.6669 197293.5901 120749.0109 698871.0474 306516943 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21765.3235 30255.7618 13917.5202 13615.184 14811.8854 6964.6681 20974.1589 4897.4918 13320.7704 18445.928 13400.0235 451654.5057 17902.8448 14967.8695 13450.7904 9869.1755 9869.1755 12334.9878 23393.9174 14432.5086 55210.7419 26636.8151 14605.099 11220.3287 8439.7431 40294.3769 8579.3547 30223.7517 16977.762 18411.0612 13418.9316 11687.1645 19854.7074 7440.0287 15361.0667 71906990 cara Organic Remediation Aromatics Heterocyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 3982.4908 9430.4344 4092.6598 27933.4353 2112.5613 4557.2353 8692.9581 3372.2066 97333.8058 7134.2628 3939.6681 3941.3815 2409.5389 2409.5389 5155.7349 9361.9313 5267.1603 5067.9562 9629.1447 67653.2903 4858.596 9358.2403 10177.5722 7065.7555 9648.6883 4867.9999 4363.0257 4845.8428 3814.6616 6503.0772 294326601 ppk Phosphorus Polyphosphate synthesis NA Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 8578.7349 13309.1184 9207.1613 22273.4023 3946.168 2577.8928 2577.8928 7987.8968 6234.3582 4439.9626 5147.1297 6573.8557 6303.6103 1848.5853 3410.6549 3920.7469 2167.5551 333908973 vana Carbon Cycling Carbon degradation Vanillin/Lignin Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 11031.1575 5747.6836 3520.7209 2574.5332 6262.4341 6695.3122 4752.3842 114671.4006 8287.4854 4844.6841 3550.6385 3550.6385 4886.5655 9786.0077 8893.643 10762.1137 11375.9208 8908.3172 4237.3651 4821.9838 9601.2439 4056.625 15056.6311 10487.0344 10100.5353 2382.0804 4586.5593 5829.8784 2661.5182 10644.7929 187477059 nbzc Organic Remediation Aromatics Nitoaromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9504.1493 60026.0172 3042.6858 58950.0117 2000.2196 2000.2196 4764.3052 4310.01 2452.2439 3247.4804 10869.0052 3781.9645 296393694 amyA Carbon Cycling Carbon degradation Starch Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 7755.9058 6890.3708 5256.5491 18243.1932 28963.739 11323.8611 7564.31 4044.1035 7674.195 16349.185 12576.031 222204.1392 10249.399 9685.4703 9219.3406 4727.9139 4727.9139 6860.2236 14383.935 9246.8957 8879.6347 10154.8829 13712.5008 4261.2236 6189.8662 15539.0521 4368.2469 23970.3437 13054.5647 13624.6567 6018.2484 6769.2214 7283.3421 5839.4423 18019.109 145284239 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 36834.7485 5051.8098 256787428 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 20842.3339 57878.7504 254042802 ppx Phosphorus Polyphosphate degradation NA Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 24109.7246 164670.3264 19591.9572 34923.7057 29049.1673 63172.6714 16503.4524 14297.9935 19060.5259 32297.1663 354016.301 20484.5431 16540.6313 92948.3937 16238.1296 16238.1296 12017.6605 41601.1206 21208.4846 81565.1168 89855.9519 30900.303 86404.3877 9537.2418 18071.8072 23340.8164 68411.7568 14275.6631 23789.1514 26636.9313 31829.3889 19902.3128 10140.2122 424575.5484 89512732 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7471.9108 7364.0443 13644.928 10359.6918 6860.4379 3292.7801 3993.6364 8240.8539 3215.3238 115577.3199 5540.5381 5873.6999 5348.3306 14076.6525 14076.6525 4388.4025 14007.9068 6624.3024 7633.5107 8506.3122 7985.8191 3083.6708 4671.5993 9981.8681 6134.912 21418.615 7397.2527 8026.6582 3767.048 5687.8436 3223.1089 5307.3955 8235.006 291245466 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 12067.0604 8505.5408 6157.3538 15949.5402 5214.6813 7424.5395 4521.794 18298.5256 14680.2456 14778.2315 1250127.8519 11714.3831 17255.2279 8361.9031 14508.7977 14508.7977 7838.0697 16686.0047 297785.7251 16528.2039 14416.4532 9782.5072 6300.1345 16102.0045 37112.2218 8613.908 73919.8163 16177.0307 19742.901 6618.459 24334.239 17414.6894 8124.8314 15773.2309 383651576 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 33720.8322 7670.9712 4753.4507 16327.0951 6043.4453 6730.8623 5391.2903 16643.5598 117896.1838 15614.7817 7213.9631 5452.4188 9353.8552 9353.8552 3458.9228 13614.1556 4248.1816 39027.4528 4790.8621 4094.6377 7827.7503 4866.3349 10040.7304 4099.5933 11763.6416 11238.9703 15109.4946 2078.9337 11520.6278 10520.1751 3946.2043 359315305 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 15875.273 8879.2146 4638.6671 12693.6298 5749.8897 2212.1205 6645.6889 7817.1949 5741.2635 167857.3498 15335.9567 6307.1835 49315.488 13270.6677 13270.6677 6479.4432 13679.0164 11176.5716 28089.9711 11480.9365 6454.0568 8546.5635 5174.4553 10898.1638 5186.408 20674.4067 7480.5044 8966.7658 5083.7372 19923.7264 11621.1889 4585.4446 10089.6047 393767904 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 10112.4921 12173.1552 62707.6451 29469.8267 1928.6138 94471205 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12127.0155 6371.8042 12118.5695 8650.5544 14808.4778 9406.9707 8499.2928 11198.9699 16189.4889 6222.028 289089.5805 12134.8278 11433.0205 14440.6595 5769.9339 5769.9339 7368.1895 23632.5418 12355.647 37194.7165 13817.7475 12237.9236 9327.7504 8635.3049 14183.3382 8800.385 22724.0136 10765.6417 23564.4003 8511.2444 8705.9972 13813.5403 7651.7709 15385.4144 78220240 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 56433.1377 27375.3783 183333.5076 15338.2836 5972.7597 16005.2528 16974.886 12957.6769 33161.6696 34309.0684 21621.1573 351658.4347 26368.2645 22395.9858 60742.9231 31906.4391 31906.4391 20396.1834 52911.4907 19699.2822 25333.1606 34997.4959 23632.3019 30129.7713 25288.3799 31002.3748 20168.4329 82967.8833 38858.0737 40253.7066 34041.2115 17452.2453 23893.0566 19691.7677 27693.2169 407304071 linb Organic Remediation Pesticides related compound NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 18916.5117 9146.2232 6737.4446 19288.2607 2824.3737 7770.4673 24371.4804 5640.3653 9048.2521 9326.1521 238474.1293 5705.7818 10042.6341 18426.7736 59097.6793 59097.6793 3444.7639 21375.7994 25344.313 9843.3213 14149.9484 5526.8489 4955.7636 7074.5858 12553.0713 8637.4049 27758.403 9912.769 15374.4552 4732.038 9893.2369 15691.1565 7339.0253 20250.795 121495622 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4483.642 4198.2458 8817.3581 73900.2054 54805.5254 72915.128 6167.5671 295058901 cysI Sulfur Other NA Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 52354.5844 16650.6684 83023.3258 232103.6964 30732.7867 13622.4085 23192.861 124468.9175 20884.6519 72828.5785 95472.0556 57354.4834 1745259.915 66638.0301 116410.3387 111805.5247 74100.403 74100.403 32203.1392 189184.884 69569.2611 33158.985 54136.0853 35731.7186 24150.8195 62623.9508 487426.2693 36963.3112 540129.7068 90770.3921 112459.8875 50699.0133 72512.1635 102759.7926 24753.4785 150442.0307 373871115 nrfa Nitrogen Dissimilatory N reduction NA Gillisia limnaea DSM 15749 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gillisia;species:Gillisia limnaea; 23583.2061 24020.4704 2307.0415 5270.2345 39536.8342 22551.4417 53983.929 5833.2808 24289.7584 6846.8226 15960.054 12391.484 322436284 RgaE Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 23141.5923 15678.6342 18356.5453 1945680.3027 33851.1094 15855.1271 17650.0431 19318.0145 7783.9407 18949.4442 20951.2912 12600.3225 538557.1704 22160.5876 26302.7641 24156.9567 13582.8808 13582.8808 19342.4879 32591.8719 23916.153 26011.1142 24112.8284 31925.3319 13066.0853 13011.8631 35969.5204 14146.2259 45631.8054 33376.6756 32428.6729 14078.0495 14198.3223 13561.3882 12705.7336 32706.8776 329908779 pgk Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 5063.9562 4952.9017 3517.0616 4198.741 3020.778 5289.1241 5773.0562 3130.3746 109439.0561 6421.7314 5105.8905 3759.0849 4300.0244 4300.0244 8034.1084 10297.0446 6884.0205 10512.0417 8442.5435 7245.0025 3152.689 5585.3907 7820.6312 4639.8748 17762.5314 6076.2618 16816.6804 3381.3694 9694.5368 4559.8998 7503.287 4281.5233 149179477 amyA Carbon Cycling Carbon degradation Starch Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 22146.6424 17263.9588 10273.971 13351.3865 25648.2954 8831.7949 19790.3631 13335.2898 7132.9002 18478.1862 37077.7935 8710.2102 355573.1915 29075.713 20231.2398 15670.814 11747.2822 11747.2822 24555.0763 69494.7537 27027.9039 17386.0989 27295.7475 21437.054 7306.72 10206.9173 28127.1295 11772.6222 28401.459 6606.4169 32746.0201 6282.78 15089.7952 12766.3939 8020.6522 64033.6451 46096440 glx Carbon Cycling Carbon degradation Lignin Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 4581.8941 9148.3173 3448.1013 3527.3714 3446.2777 4302.8867 3822.5728 87887.3903 5362.0095 5106.9526 7519.0323 3881.9778 3881.9778 3739.6714 9313.8357 5494.0119 6160.2944 6301.4509 7900.3645 2906.2921 3705.7546 7026.967 2750.33 13439.7678 3655.2063 8159.055 2458.0355 4480.9433 3617.421 11954.6569 8618.0622 218675453 ppx Phosphorus Polyphosphate degradation NA Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 11581.6855 5127.5765 15369.5695 2836.1008 5166.3737 7372.0949 7437.5852 5694.9018 4204.4043 59318.8556 11370.5239 23035.7421 12374.9159 18530.0187 18530.0187 5348.967 12156.9324 5246.1161 12794.4081 7486.6051 8121.1435 11127.8276 14362.7632 10641.4951 5952.463 14596.9516 17533.398 8378.0252 8814.05 6327.8601 5741.3231 20898.3476 9286.4074 11125689 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium funiculosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 10705.8908 23841.8718 3822.1419 3112.467 5410.2722 8096.8 4570.2559 5640.7766 19257.8299 13759.2186 13759.2186 13632.579 7079.7559 5377.1762 18688.7076 4630.8366 4218.6566 4078.4357 8157.8958 9567.6726 13319.7196 9583.5122 15325.6574 2101.2637 4631.7501 10486.1209 22058.5805 8187.6153 126708351 cmci Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 43938.3251 32908.4344 8231.4558 32188.4424 11101.3244 24742.2374 19956.443 16913.8837 26404.0869 42041.8967 42753.7259 477500.3961 23136.1039 187558.9615 22967.1896 51998.6933 51998.6933 16180.3645 46850.4677 34379.5154 12730.0183 30332.7364 27555.3248 10540.6873 21997.9099 50247.0723 33257.35 71830.738 33922.6371 53810.0701 31902.4065 45644.3077 31148.2866 28328.2735 22414.9175 87282693 Sir Sulfur sulfite reduction NA Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 37038.3212 9045.9273 22436.9547 2983.2989 5342.5373 7615.241 3625.3797 5727.3175 4414.3888 9336.1091 10927.2397 9589.1247 9589.1247 3706.9956 11282.9518 13985.2079 11587.271 5462.0485 4098.3256 7617.1265 3693.1909 42350.8757 14424.2963 14631.8889 2982.3728 7062.7689 9079.1524 10000.5759 108463770 ppx Phosphorus Polyphosphate degradation NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 10972.5093 12937.9725 10981.2871 45169.6968 12791.7532 8290.0078 6368.8367 6100.1737 8563.2694 8124.2593 237537.1497 9640.368 11443.1633 25611.6036 15874.3762 15874.3762 4843.5129 14296.7604 11509.667 9027.473 8612.0145 2818.1958 20163.2489 23373.5137 4454.5153 18388.4154 11889.1091 16974.1852 5904.8896 8250.6043 5137.3504 6301.7566 94471315 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44387.1109 17526.4291 130569.8606 84156.7579 32354.6118 9065.5191 48656.4781 51863.3159 36253.123 100784.2112 69465.7037 47143.0153 1243608.9334 62152.757 95015.7774 110005.1961 88418.282 88418.282 61018.4192 74183.5504 61579.5735 36922.6995 64724.6656 56490.3854 52267.7864 25850.28 50921.9746 46353.6617 213679.8734 49526.3662 100906.6676 33707.0878 42133.6459 41593.4908 29581.2171 50353.9272 359290843 poba Organic Remediation Aromatics Aromatic carboxylic acid Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 4457.0451 3903.2627 2178.4446 2392.1762 3274.7727 3274.7727 261880085 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 4860.3788 4744.2104 59502.6495 5908.0206 3934.3988 6981.5048 4143.9872 8841.7674 12812.6083 5017.0443 6001.2022 3292.2524 4877.1442 328809536 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 16082.9566 22036.3448 13512.2873 14201.9962 47741.3051 15981.6276 7792.2534 27584.1377 22448.0783 23013.963 265212.2759 28250.1159 16847.6371 25570.8468 44579.1923 44579.1923 27102.8285 27389.1054 13143.8599 38492.854 28509.0401 11247.1454 13690.0933 29307.8252 32196.2396 36263.5964 104717.3971 115773.55 24047.0741 11320.3592 14068.4194 21773.5393 10734.2865 171786.3094 359406214 gdh Nitrogen Ammonification NA Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 126779.8398 20103.9328 23761.6794 24319.6833 34232.6049 18493.9231 32615.8386 96816.4728 14318.8696 30852.6828 51798.924 62784.6638 625370.5431 732755.3572 31192.5383 20034.2514 25376.5628 25376.5628 35529.7183 52253.9702 42541.7423 44340.8339 43978.6961 36628.8661 29215.4535 25711.0721 51712.8824 64210.4931 90110.6254 27199.7087 74286.4218 84881.766 29113.5196 41670.37 35921.2154 46771.8218 209401858 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 50638.9912 508654.2075 22302.7439 23706.3141 16020.453 19009.9144 30339.7891 24934.5475 22786.6892 25489.7502 18758.2278 373323.9353 27895.9304 30358.2076 18591.9403 13395.5201 13395.5201 18635.5699 35846.1672 25682.1619 30335.8731 31581.1394 13322.6138 13141.3234 22572.8068 84090.1996 22723.1574 55175.8028 44549.245 34454.9736 48378.6943 22447.0377 26258.8113 25927.0711 59283.8459 338205479 aoxb Metal Homeostasis Arsenic Detoxification Acidiphilium sp. PM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 7310.3144 25407.3482 14467.0771 18210.7476 15057.754 4896.777 8221.6275 3688.9894 5413.0481 13558.8582 11011.6456 329684.868 8902.4186 15766.2038 29427.6496 23477.1718 23477.1718 4612.3894 9747.3378 5127.8622 5897.0433 6544.606 5307.3949 12358.9183 19286.441 4608.479 19085.3468 13415.1261 16476.7836 5553.6861 9110.7099 9715.3005 3094.7631 4654.4593 144901256 cellobiase Carbon Cycling Carbon degradation Cellulose Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 73136.0507 17063.1512 9733.2755 115364.9446 10578.166 26348.434 24057.7025 18995.7187 13602.2346 20989.5802 38760.7141 864923.5487 19347.3943 33000.3611 68300.6625 36796.7245 36796.7245 31050.6517 34517.4356 34774.1507 26282.6294 49837.3896 1163183.4275 35227.914 31542.4251 34229.3017 32324.2892 70794.1806 74905.1401 51077.9086 21811.0004 40885.6656 32296.0293 18453.2237 93842.3379 334106380 rgl Carbon Cycling Carbon degradation Pectin Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 13869.0402 1988720.6358 518503.9455 14068.0606 21049.3479 11644.7441 4182.1818 48215.9433 9372.0534 12520.3401 8804.2114 241520.7274 6255.5494 11589.6975 12003.7457 6048.064 6048.064 5796.4024 12293.8988 10549.7954 29076.5709 95046.5347 10022.4793 8657.523 5231.2942 10936.2469 5735.4932 17073.6414 11064.6114 12293.5162 4335.2787 8080.9226 8382.9844 51513.9824 19154.5122 324997870 catechol Organic Remediation Aromatics Other aromatics Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 12759.1685 23887.5844 32074.5109 15463.7341 17344.8942 76044.0422 5692.7096 70736.4596 47454.6496 30664.8998 36691.4313 20361.6542 205987.2368 17673.666 24012.3478 24678.6924 16224.0083 16224.0083 23135.7658 25077.2639 23729.9402 7955.0885 18709.186 7470.798 9986.4218 26412.89 19406.3564 41490.1595 97735.8367 38347.81 184639.4195 10376.1825 61450.2113 21851.5356 35889.1892 14655.3844 148253943 alkk Organic Remediation Others NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4472.5606 319548.2686 1840.3588 4916.7915 2954.9585 5138.4931 7761.0408 5579.2852 2277.39 2277.39 4212.9657 6058.5898 4070.7111 2842.4384 3067.2104 10742.3142 7473.2322 9839.5522 2932.4295 378825465 phenol_oxidase Carbon Cycling Carbon degradation Lignin Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 49894.9814 29269.6352 15598.7915 37287.6656 8757.5328 17067.0493 11331.921 30548.5677 14156.7251 33493.6624 25088.4038 399376.4016 36960.4119 78239.3126 34776.7654 29037.316 29037.316 67972.6381 83800.3858 32085.9916 15320.8723 58085.8765 15434.6994 13885.8357 16057.6775 42172.2823 13347.9359 47928.2276 30251.559 71409.2805 20405.5392 25069.9208 74195.6214 13312.9021 30922.7221 388256580 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8426.1375 80811.7729 3769.4193 3687.0919 5994.6016 9347.4914 11569.9605 8698.5181 250704.8054 4422.8269 9590.1766 8073.75 5106.8532 5106.8532 5736.0946 12390.5481 5821.6808 6214.361 15479.7044 7074.3918 3154.4043 4429.5479 10187.1467 5965.3379 22098.5471 13169.3118 11962.8178 5055.2492 4872.4729 8046.4298 4905.438 8032.9117 112462569 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9014.3091 4148.7963 2805.8443 70032.9778 4129.8041 3386.7919 13783.3119 13783.3119 6568.8058 4370.1442 7544.4765 14897.802 2023.2768 3330.2023 7312.6804 241363906 urec Nitrogen Ammonification NA Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 38817.4844 31705.8992 9135.4447 65150.5108 21538.8947 30976.3151 40324.0753 88137.4094 24621.9171 47638.6561 38955.4103 716395.3745 203636.1235 27162.5237 28648.5042 22936.1416 22936.1416 12960.0251 53745.1333 29468.4513 39084.5867 33682.0942 36158.4111 16795.9365 28207.0227 22357.1054 12019.7443 41238.6552 43704.4232 33909.0502 15002.7714 24073.5855 41895.7407 14638.3046 29843.6856 164635445 pme_Cdeg Carbon Cycling Carbon degradation Pectin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 22526.2399 32608.3223 18601.1605 87012.4196 18391.5017 14180.6227 20171.1309 23306.0453 13914.2853 27594.3899 25193.3922 18897.9321 498175.3964 31135.5291 24445.2447 15484.0044 12561.971 12561.971 32975.9789 42849.5002 22266.6888 27811.894 29017.0557 33559.8142 52255.1874 45403.7926 28597.2764 12905.0623 52559.2214 16494.0115 27060.4981 15620.2511 14543.1111 18476.0042 13905.0715 39016.1731 319794391 PRI Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 40977.313 59726.7567 57561.7039 48413.33 8609.4336 31474.9525 71860.7667 31060.9543 62356.0724 39443.7831 44495.7964 725241.8763 142877.1541 153202.4263 73207.0817 90674.5141 90674.5141 45066.3343 69181.7452 30139.7222 29532.2076 115161.5123 31686.3774 31939.2927 65096.7911 57866.3241 45474.4567 129665.0676 32672.5157 39398.6626 40192.8149 40556.3637 27223.1016 16562.1265 33452.9287 350274917 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 5348.9935 54019.3892 3739.6104 7064.6081 4327.5117 3864.8765 2539.3069 5911.4147 6765.8538 2735.8358 3002.0801 2198.6578 5938.2559 115391876 vana Carbon Cycling Carbon degradation Vanillin/Lignin Streptomyces sp. NL15-2K superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8234.5233 10430.775 26226.7513 6780.9392 4834.0342 11890.6498 4325.2 6280.5971 7639.3329 116843.4861 6076.1807 8074.5875 41688.473 5479.4437 5479.4437 5303.3603 13160.4393 6181.9287 7806.362 7772.6761 6096.31 3559.0253 13516.872 13697.9661 4136.7482 22969.553 13505.4755 17202.6612 7278.2264 6490.7832 9455.2956 4020.4893 6060.5161 146403706 soxY Sulfur Sulfur Oxidation NA Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 20168.0911 12715.4601 3540.0043 2286.0001 7005.2588 163154.2273 5476.0278 6296.4532 6296.4532 6103.852 9687.5351 11106.6742 2625.849 14436.7763 3836.2848 6808.7516 3102.357 4839.921 3206.2282 77820042 nirs Nitrogen Denitrification NA uncultured organism 33038.486 308866.147 18265.4911 27598.7771 29495.9413 27349.8388 24040.1119 12362.9651 17701.4123 28983.4783 102713.3642 2605577.9955 21273.8312 15545.9667 25487.2229 31929.2543 31929.2543 10623.5025 29295.4579 41632.6368 21715.8918 43140.8485 39776.5735 77518.8389 30549.5109 47159.9418 149822.4552 122981.0777 36197.8174 41241.3533 22997.5059 22427.3727 14214.1792 17193.7063 23495.041 296166833 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 288238.5192 19156.3408 104944.1899 196015.2677 104376.8799 95916.1486 52371.4671 102636.3132 81438.1031 265995.4327 125742.9378 92147.1735 1469060.0337 115729.7596 114158.2939 154929.0412 114418.2716 114418.2716 66873.747 137873.0684 115282.9522 153963.2991 116657.0404 119404.8512 94006.2145 136913.66 109798.5716 260720.6984 200118.0279 138241.2736 116135.9302 54021.97 135089.1918 101283.4445 61955.1779 107206.1702 78778252 soxY Sulfur Sulfur Oxidation NA Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 7127.7478 176303.9067 6229.3308 7301.5544 4280.2485 7884.807 6287.1252 5928.7777 63797.4549 6602.8834 12987.2762 4423.2752 9106.6251 9106.6251 22562.7095 14195.9011 6776.7065 8667.5815 7174.1735 10173.4728 2419.6562 4327.3673 29099.7078 11580.8993 38736.0468 14758.5948 18754.0229 4605.8077 4532.8945 69804.8518 4464.301 13918.4784 328808954 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 11273.7668 7781.4317 7077.6544 12659.4549 4511.3466 7865.6117 13774.2376 3924.4691 7630.2889 15973.042 4547.6951 177074.7039 18246.2601 11857.9133 9975.1592 6699.7302 6699.7302 10016.8307 16951.653 13816.2238 25570.1974 16052.469 15780.4779 7175.4535 5844.4746 14267.3299 5623.0899 21981.0918 20276.7368 11324.4526 6640.0406 5822.7884 7721.6922 8377.0403 20466.2559 117993535 alkb Organic Remediation Other Hydrocarbons NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 28315.0694 6161.2348 6703.417 16063.156 2798.1677 9609.5873 4324.6077 9750.8323 4274.4637 379575.5 8293.6037 9766.3397 176558.9355 7089.7192 7089.7192 554518.5231 11911.7178 7274.8434 28273.5689 54555.1709 9497.8102 4114.3138 8982.8742 351265.9464 15203.0902 15500.0447 9303.0571 2851.9862 7820.7966 488688.6125 9922.8858 10838.7417 163760649 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5457.7014 17791.7275 5008.3405 2964.6514 5698.1189 4935.284 8284.7597 4315.5551 2801.4093 100306.0725 5612.6571 4130.1026 9105.4565 4698.588 8020.154 6870.8851 3738.2396 6731.2099 6921.4568 5243.9061 3567.0382 4756.3485 19587.5716 9550.7187 9940.1673 23630.6515 4439.5905 5370.0111 88864142 arsc Metal Homeostasis Arsenic Detoxification Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 11764.8524 5931.603 12302.138 14944.2171 6972.4416 5082.8626 11395.5533 22719.0999 8908.8906 260164.2831 12940.9428 25465.5188 12775.4333 9442.055 9442.055 7699.523 17869.9538 15145.4189 13231.4196 12805.4792 15005.5302 4603.7565 6808.5795 19773.9318 9738.3637 28329.3588 19898.4798 19967.597 5912.5199 10978.8822 10133.4695 5977.7337 15611.386 390126549 arsc Metal Homeostasis Arsenic Detoxification Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 14097.5648 6246.2277 8952.8025 34694.5689 10573.8597 5078.0893 10575.1427 4968.0321 71162.1899 6334.1563 337737.6129 163156.9473 358733.6564 11679.445 13447.2245 6083.3481 6083.3481 7151.7261 8943.5041 7014.7269 439681.0888 10050.7256 4489.8215 5175.8336 6495.6024 17003.8554 6167.3557 12833.1862 7465.3501 12911.4289 4515.6533 8171.7641 3993.3133 3945.1337 7066.148 298290968 fccab Sulfur Sulfide Oxidation NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 25962.0432 24837.4532 22788.1498 4573.6937 2405.1671 6569.5945 4529.1315 35078.3868 18338.9079 16542.7853 109768.008 9552.2565 56878.0229 29343.0107 17012.7551 17012.7551 11607.9848 17553.923 12084.7363 10127.8643 37184.0347 9537.8032 37698.3629 16759.5714 16499.7656 141721.8791 16857.302 12758.9303 22180.2349 7989.8309 13327.5641 30722.2188 5756.7795 8866.4067 297197274 alginase Carbon Cycling Carbon degradation Alginate Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 33843.426 138976.2207 26391.6551 21242.9601 48461.9545 27489.9985 19198.6023 23006.6405 10737.9605 33589.4725 21286.5355 30581.0432 370704.3682 40845.8868 25076.7454 37177.2703 29298.0081 29298.0081 10277.8474 39680.3945 13189.56 24726.5586 318698.223 48977.4953 14852.0958 15511.5559 30285.3969 14900.3482 99545.7251 27624.6213 30326.9014 19955.9344 21579.9295 21854.7524 7911.9823 49395.768 145016496 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 70152.8917 17396.6655 48717.8626 39885.0652 41921.3714 14466.3887 20680.017 19965.7346 24670.2107 30322.2024 30838.0609 25950.6764 672229.9581 28765.8465 35924.6267 47522.313 39541.5749 39541.5749 18939.8338 41895.2313 25737.8918 39369.3027 42795.2024 678525.4401 28059.6607 22391.9481 47540.5801 20019.4579 66922.2477 93951.6239 44091.3657 15606.0419 34778.2948 29437.8054 55437.9221 60338.1375 116609586 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8512.8783 14587.682 21694.0056 21294.2575 7452.5768 5150.9812 3482.9389 9264.1965 9567.6214 4627.7602 224486.0899 12306.3467 10402.7576 15342.987 7146.6528 7146.6528 7449.6051 16144.6337 10939.8151 11207.8039 18156.1299 12409.9229 4626.4547 4916.961 15111.559 4732.7695 21177.5802 14984.2993 17458.2347 5559.2879 7419.1433 5559.8937 4326.931 14005.7758 156039647 dehh109 Organic Remediation Chlorinated solvents NA Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6121.0622 6211.0667 4432.0951 3928.8189 2558.7666 5486.1111 6108.8492 2341.0473 110663.9734 5616.0434 5310.9307 4433.661 4433.661 4285.5289 10873.6258 6268.5834 6866.6948 8510.785 9250.385 3312.6177 3423.4588 11174.9808 2601.39 10992.9057 7431.9413 10400.8422 3424.6539 4572.4679 4751.1424 3054.476 14035.6578 16505117 nirb Nitrogen Assimilatory N reduction NA Salmonella enterica subsp. enterica serovar Typhi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 10971.0613 14658.6237 24805.7814 10214.1685 7774.6183 5886.0452 3713.2107 13881.0711 45427.2333 9464.9002 46827.1635 14823.6061 196597.5922 15195.6362 9949.3372 18060.2692 21839.8305 21839.8305 6586.5789 32670.3596 392574.0158 16247.0882 17813.0673 9786.7848 5269.2048 11833.9521 109275.7056 8458.179 27967.3604 20737.373 19523.6374 9351.1935 17519.048 11596.2899 10401.3581 10531.6834 170111461 axe Carbon Cycling Carbon degradation Cellulose Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9425.0731 10816.4548 29556.64 10845.1966 6607.8647 8677.5743 3708.4397 16435.5494 56104.5706 4821.50745 7834.4899 73749295 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9143.5567 3376.9541 3376.9541 11012.6419 9383.2331 4682.3609 256798903 amyA Carbon Cycling Carbon degradation Starch Anaerococcus prevotii DSM 20548 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 562901.7245 4628.3779 308750400 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 84691.319 12135.946 16719.9828 7863.4359 39435.0139 11237.3427 12389.3355 30348.8227 16804.219 16342.264 9467.3183 326243.7297 18234.0376 16525.5371 9089.3471 9198.8596 9198.8596 16834.8895 28259.0641 21150.5207 29376.3267 35234.5407 36155.5623 12101.5863 18754.792 27059.6534 13376.5616 80634.9373 26778.5566 23291.0652 9457.6486 13586.4188 22570.2028 10847.19 41582.3574 3337415 dbdd Organic Remediation Aromatics Heterocyclic aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 4961.6734 10305.5321 5920.4099 9881.9755 4686.5866 240077.0064 93008.1557 13817.1751 6858.6001 4096.61 4096.61 8003.0489 14703.5306 27525.3887 25638.6808 3731.0867 5992.6595 5179.4227 3746.0852 16563.148 12873.5717 6282.2019 3258.2712 8378.2335 17199.5017 3554.2727 5476.0897 197934530 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 22212.3943 2985799.1965 649152.515 38140.1294 22767.0872 6167.7495 13260.9837 14078.3472 9720.9911 19166.1401 19491.805 17220.265 321359.276 24928.0936 26321.0698 14026.4828 9529.2691 9529.2691 16241.8104 23933.6768 21212.8528 32045.9002 33477.37 32119.1326 11785.3007 14709.251 26426.4459 9407.3955 46244.9175 22592.3111 35366.0234 12476.8563 15184.6773 16069.5826 8992.6463 69369.0316 259023519 alkb Organic Remediation Other Hydrocarbons NA Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 16146.661 6322.2402 47406.9017 24686.1552 2312.8785 5077.2598 11239.9238 6243.033 29467.613 5100.7612 112437.2447 7203.3547 7699.1142 5803.7412 5803.7412 4449.7242 17698.6505 8854.5905 10842.0264 19746.9375 7555.8756 5948.927 7413.7638 10076.3643 8678.741 22882.0595 10543.039 13073.0661 5351.3033 7574.9535 5773.2133 8214.1333 17474.1803 326547826 badh Organic Remediation Aromatics Other aromatics Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 65751.0413 32665.2106 21176.6882 14578.9608 6386.5261 78756.6932 23216.2985 19664.2875 26951.558 47262.9351 42993.438 333831.6578 24611.3822 25671.2249 56776.3226 42947.1981 42947.1981 23570.6749 186124.5493 29714.8073 35413.3581 31929.1562 40407.4868 34828.2803 38226.7329 27569.251 33528.2012 107286.401 155673.891 69626.9229 20223.9795 72614.1886 49449.1059 27695.0685 40090.4491 226227593 chrr Metal Homeostasis Chromium Detoxification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 26151.3403 17471.4911 19375.0099 45664.6012 19636.1985 15719.157 57133.6191 25546.2363 26416.6388 27547.837 123811.3587 500915.3149 36759.2449 20437.5836 97961.5591 13838.4484 13838.4484 20333.8783 36402.2124 27140.7687 22620.0892 34367.2151 33784.8791 16065.0882 17763.4902 38150.9269 81638.853 60940.1695 22494.3959 71876.6771 444834.4427 31345.882 26054.953 39100.8431 77746.1927 134133937 catechol Organic Remediation Aromatics Other aromatics Pseudomonas reinekei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3682.058 3668.4514 4037.7688 72853.6843 4686.0875 4160.01 3287.9826 5983.8235 4419.4349 6458.6216 6908.6619 5132.209 2207.1355 5637.9037 2310.4202 7971.1212 6111.6891 2799.9948 3141.8263 4165.6386 2245.1199 6708.9178 62149150 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 17257.5791 10477.8397 11841.5236 10966.5907 13992.8914 7165.1897 8153.566 14825.6314 7475.1273 14784.6431 24373.8063 26796.5385 372229.4346 13150.159 19008.8131 16115.7546 16913.9713 16913.9713 10554.6132 60179.1991 12429.9703 17563.1697 15490.714 19100.3536 9342.5686 7248.478 18639.286 6724.8053 12542.5419 10236.1813 54452.413 8811.5976 37302.8973 13860.9202 164818.5052 19628.1559 284017322 ara Carbon Cycling Carbon degradation Hemicellulose Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 8767.4017 15934.8804 4989.8115 4826.9778 3087.9933 4647.8571 21330.2742 5738.9214 98858.5836 9343.5709 6538.5368 2842.0553 2842.0553 5440.7909 9349.8128 6770.1553 8724.8904 10653.901 13495.7615 5503.028 5095.8855 11062.8686 6448.4985 18232.6209 8445.1169 11852.8525 5831.4748 6453.3753 8616.6313 8705.3651 12550.1678 82944453 pgk Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 6450.3286 6059.7013 4424.125 2216.7359 3260.5764 5243.1103 109135.2613 5310.3355 3221.6125 7543.5614 5424.4468 4993.6458 7960.9566 8186.3072 3679.0137 6909.5601 2126.8794 10752.0161 6230.5669 8469.7239 2629.8809 3646.0222 4829.3788 2501.0456 5063.8825 118471712 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 245660.9032 86794.4717 56093.3179 23375.4102 9652.3834 14708.5039 38740.2548 33772.0778 61791.612 36491.5492 81885.8151 476222.8596 31272.1405 241807.2592 98099.741 91838.8934 91838.8934 79027.6714 88854.0241 36920.1841 53884.4166 100784.8677 22364.0535 49541.7934 93069.6224 85809.8492 50307.9116 106804.6986 43248.228 77637.75 32422.9349 93063.0468 78858.0443 33779.3453 92671.4114 379989021 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 60852.6239 45195.7709 13100.3758 266456.0907 7977.7717 7793.0046 27170.3333 31520.1079 12532.1564 60358.8791 38986.6005 515050.3015 54370.331 29715.8043 42064.2914 30959.2543 30959.2543 23096.8881 45449.8263 36238.3782 47246.6316 51278.4492 50109.7095 15655.091 19156.4819 29760.7151 24436.8355 99316.8403 43159.8609 64016.3206 31200.7999 39924.2177 50634.4426 162440.0913 66593.7983 193244799 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 434542.3725 9701.5515 109498.6589 3284.881 6352.2811 9486.4147 6985.6406 14189.6049 54403.3053 4466.2804 5731.6989 4603.0294 57763.2725 57763.2725 4668.1868 17483.4705 6499.6884 6490.9717 8734.4202 7114.6005 3068.2005 12587.715 7085.5099 4387.3611 18332.9499 62947.6849 49854.8701 4566.4963 5495.41 11968.814 8569.1116 9242.9259 298554866 amyA Carbon Cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8216.2713 176126.3048 83447.5621 23094.9198 4541.6281 4680.5248 13007.1463 15264.9588 10371.0895 80442.4869 11977.9612 18838.7082 16530.493 12605.5604 12605.5604 47648.2133 11745.8743 4748.5441 15856.8752 12488.5253 5309.6951 5947.1565 26033.9909 13217.9561 11634.147 26528.0907 7295.8688 13956.5143 6059.535 5598.4717 9320.073 4515.3768 5675.663 326415452 bphb Organic Remediation Aromatics Polycyclic aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 15700.3939 234056.7548 121015.0956 8327.3353 16773.6731 8802.928 10235.8399 37504.6809 10162.9349 23321.286 10456.1617 91413.4032 7524.7953 17146.9815 23150.7929 5727.8114 5727.8114 4561.651 19340.5496 13042.1753 8808.7455 10191.2248 7637.9219 9917.6824 14042.8436 8616.582 7677.8192 17750.4199 10860.0441 11675.0703 7976.3891 9372.632 22872.6026 4794.1487 5622.9397 241879482 dsra Sulfur sulfite reduction NA Desulfovibrio vulgaris RCH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 7136.8446 5767.5547 312112804 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 4428.6863 16474.146 3748.0312 74700.2969 6383.1909 6145.4342 2421.5587 89982.2485 6155.3549 5033.7342 12068.5753 5149.8575 5149.8575 3332.6307 5210.165 4685.4318 4633.046 5184.1905 6098.9872 2512.4738 2910.7819 6355.8178 2211.4881 11463.9245 8270.6823 8559.1251 8756.0242 5859.6033 3330.9529 2277.9882 7101.01 189198862 cutinase Carbon Cycling Carbon degradation Cutin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9571.9696 12782.8687 2176.4583 4867.2452 6175.1444 2724.6354 220760.1359 6335.022 5614.2838 2341.6643 2341.6643 4148.9817 8407.1532 4884.5113 9756.8245 6154.796 2370.0614 3006.9812 5630.7035 5980.2346 29035.6719 5157.1341 7709.4241 3302.4679 6235.6341 4505.1018 4013.1639 5636.5267 188583364 SoxA Sulfur Sulfur Oxidation NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 19667.7078 404894.3387 14392.2861 16072.1649 7187.8836 6071.0269 5517.4981 17679.1011 9446.8684 21706.0899 14835.4669 196959.2178 10924.4516 9133.5072 13171.6296 4497.6418 4497.6418 7034.2544 28751.6552 9076.8726 13208.1851 17932.4939 13324.0326 5785.0337 6405.031 17459.6578 5739.5807 34200.9015 13052.2241 14757.3736 4280.2456 18009.4272 8345.5676 7818.0127 11525.8435 311228592 xylanase Carbon Cycling Carbon degradation Hemicellulose Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 16583.0327 299962.2544 4683.1561 17499.749 4185.4043 4486.4919 9026.2006 8386.1226 44273.9067 14285.4271 9663.3519 9663.3519 7974.6116 6349.9589 8780.5094 7511.9466 6996.9394 6651.9681 5313.0439 9637.5686 7764.1893 7390.1182 15366.9753 8188.9429 17723.9644 4533.8154 8972.1414 7723.8664 6124.5747 7209204 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 8381.3154 3489.7816 2061.5728 3257.1126 7452.9361 2418.9108 73426.461 11320.4431 3272.4723 3318.2616 9752.5669 4829.3553 6765.9496 5926.8583 4587.1455 2986.2657 3598.8755 8667.1856 2953.5802 10264.3059 4459.559 7814.6611 3155.6146 2894.1928 4022.0016 3670.747 6508.6341 260597838 ara Carbon Cycling Carbon degradation Hemicellulose Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 99321.333 21244.202 27334.8508 160878.1128 10171.3612 12289.3471 17480.3705 43649.6751 19896.1304 204392.3178 36947.4433 745453.4506 119402.7927 32345.6613 128765.8667 28834.5513 28834.5513 191676.6908 38730.3972 21812.5791 23561.4618 27003.0195 2592920.8281 48713.8941 31083.658 47678.477 79040.9594 120735.1089 41882.2028 55011.8989 20790.9963 37640.3015 34786.5629 18435.7808 63410.4169 165880013 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 55431.152 8962.7236 17772.9511 125907.8912 8159.7689 12230.2595 18144.7467 11166.6856 16357.1429 18373.6722 15785.5616 354503.353 22573.2922 210245.4557 19206.0572 10417.1143 10417.1143 5723.1695 31417.7974 22798.5386 18785.9259 24275.8357 20698.138 7842.154 13781.6554 30703.4846 11118.4178 54708.8918 26500.9418 25657.156 15116.1072 22586.9621 47668.4818 7293.8172 15069.559 14389219 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25836.1282 5122.3432 5956.2051 3412.8758 7111.191 4494.7355 9361.7389 11650.6629 26286.4303 238941.7168 4404.8819 5830.6616 25606.5435 55767.1288 55767.1288 4991.7976 100809.0669 5381.9666 5034.3878 12425.8289 8936.3997 5390.5563 5378.9644 11823.3737 13012.7074 21484.3376 7644.4183 20598.1621 4247.651 7297.9883 10567.5155 4663.9938 22192.6514 194292621 arsc Metal Homeostasis Arsenic Detoxification Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 6615.1218 10946.5356 5771.6031 3706.2871 26943.4164 3356.9451 5750.0274 2446.9876 71485.651 4697.0476 6373.3621 3289.2338 3289.2338 3512.8929 9139.0216 8350.745 5012.7179 3567.829 4572.9967 3915.7382 9819.2096 5552.0284 11631.093 25382.1084 7152.9877 3340.3381 4652.4857 8063.3039 4180.1936 16080.774 119859016 nitro Organic Remediation Others NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9942.0374 9929.3253 9120.5635 19404.3203 9327.9327 7384.7692 10536.6448 6421.3786 17287.2759 10895.4078 9827.6112 127982.0487 14819.8617 58015.7817 10029.2832 8108.8848 8108.8848 7588.5493 24024.5027 18450.5374 32077.5449 22480.0865 20935.647 7678.8483 15032.4294 16400.7842 7250.7151 32924.2547 20329.3235 16817.6305 6284.3254 10846.8836 11377.0094 12132.875 11415.3848 326695050 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 10574.9979 10584.5639 7015.2127 24340.8063 289853.2367 8347.1142 8462.8068 15686.007 3648.3995 8638.9642 9992.7732 11919.0616 157261.1151 9902.1246 19272.118 19689.7581 5391.1038 5391.1038 12367.8638 32905.3838 10513.5621 13349.8695 11925.7223 10809.6855 7357.1037 7560.7038 13205.5472 6446.4522 26768.0784 9999.8097 19767.6109 18783.7117 9510.318 10180.2734 10420.6402 25732.9465 353451534 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium abscessus 47J26 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 14831.4478 11984.7606 17179.5522 18172.1676 22217.1522 11006.0001 8187.8678 12284.9672 13484.7948 5976.4124 238632.2637 17323.6601 15694.6285 9207.8672 9550.2575 9550.2575 15158.2066 22687.9312 14575.5104 19042.1099 17980.8054 25088.0083 8379.986 8517.5236 18346.0466 7683.5379 28043.1058 16274.5273 20056.9798 8037.4714 8351.0121 9612.8299 8582.9716 21216.3258 197712107 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 140153.2874 16307.9558 393461.7921 172856.9481 83446.2512 25741.0643 23737.0177 32631.9184 99280.708 105597.6623 48137.1573 87590.5459 1500691.9113 127678.9852 78306.1051 50413.5074 46909.1783 46909.1783 79137.0743 55197.371 36557.2495 262816.3396 84975.0896 87331.0748 44421.0718 69106.0312 154942.7225 34423.6069 133615.5275 114566.773 120391.8434 23952.5628 56078.4471 74551.266 127882.8607 104716.3727 224537702 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 4409.8716 7004.663 7004.663 3510.0015 209487036 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16099.8634 6891.7551 8284.7406 8559.7849 6498.8796 3381.4351 10050.2393 10424.2433 16332.9079 336918.7323 50895.7744 8887.7395 46505.094 11868.4595 11868.4595 6180.817 20357.5861 15409.8475 12216.2186 8908.6731 10300.2955 4731.8359 5964.4555 20951.7759 11345.3555 35579.9875 18900.077 13949.0125 189289.5604 8614.5751 11498.2513 5008.9398 14905.8834 45386249 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10102.5797 31133.6484 3797.2446 5883.0953 3021.1054 98381.0688 2456.4437 3984.2557 6214.1728 4363.1514 4363.1514 5617.022 6793.4457 2413.0206 3166.7255 4910.1826 330958537 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 40854.8493 18246.0757 270201.6279 22918.3121 26683.1468 34418.8358 57514.2049 4496.1553 21215.4746 32437.0498 54887.6826 592297.1679 27313.6387 25998.3001 90925.5176 52225.4857 52225.4857 43571.8128 74334.2688 21338.6221 23169.346 38733.9337 47634.8519 24505.6026 48725.3247 46220.3817 22448.3188 54258.8449 36297.0342 161644.1442 12790.7124 25322.9081 32852.2908 29855.955 41132.0898 403187373 badi Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens DSM 6976 = NBRC 102413 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 3971.4934 10756.4425 129965.0967 4862.8618 3141.9366 5353.9853 338211054 bphc Organic Remediation Aromatics Polycyclic aromatics Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 14447.6311 43155.1444 16057.1322 7285.7296 7539.6642 6177.7736 16498.7461 20735.7176 16178.2751 284681.9658 19336.2167 50289.5908 15369.1057 22612.1486 22612.1486 14654.7989 53900.6324 12085.8885 78880.1578 19838.6799 14422.6961 18398.044 11905.2869 14158.1032 10570.3687 37034.0419 23988.6691 31397.2478 5187.2102 17918.4887 23074.3161 17386.4075 25170.0098 324099790 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9054.8472 24182.6582 10605.5427 13359.3736 14579.3582 8246.4109 6716.3839 5566.2442 5296.2349 5663.4052 13042.9252 3866.1554 277636.1796 10678.7554 8782.1216 11239.4348 5042.8041 5042.8041 6240.776 16383.6242 10995.2826 13662.176 16687.5775 17220.4484 4137.1406 6031.8887 17260.7681 9935.3821 21137.631 14193.3325 14849.5986 9853.2716 8570.0631 6571.7962 5472.0661 12061.8529 83590789 atza Organic Remediation Herbicides related compound NA Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 83235.7232 59826.4317 21527.5517 145373.7065 64862.8101 10352.6528 26841.4591 19889.3134 30646.9485 44391.8111 25079.7031 762690.5164 30636.6562 44377.4979 97615.0982 39484.8414 39484.8414 15428.6772 44190.2342 35845.4878 20984.6278 39024.3156 63403.7581 8569.2116 37679.7939 63416.2685 14521.3433 60173.9567 52096.4695 64083.3162 15780.4972 22026.4418 31627.4367 8979.5096 20014.3488 119391473 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12018.1742 5297.5477 5453.6683 11681.6709 3337.0778 7899.5299 3636.6649 12658.7959 12674.6536 74987.7672 99562.3709 8358.6752 82566.2568 15463.5287 4214.7938 4214.7938 5812.1994 13629.8752 9377.9654 11048.8016 18180.0074 13583.0528 6459.1553 5534.1365 18225.4828 5483.1395 19708.0927 10074.5798 11817.4443 6045.1942 7447.1975 6576.9614 3832.007 22115.018 373098384 arsc Metal Homeostasis Arsenic Detoxification Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 90520.0681 189275.9048 13976.9835 45724.2292 32004.1469 27329.5014 19924.9104 21770.6495 46142.4215 98274.7278 50711.4597 508743.4936 36239.5664 32662.0539 38045.8313 40613.2094 40613.2094 47080.4011 60984.4023 27704.7271 27548.4685 72893.1129 29743.7649 21417.5652 35628.0919 48471.2258 32117.1201 108229.6451 58445.0426 63575.604 23139.7681 37800.7526 53646.4101 39208.8337 55081.8897 184191686 pgk Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10595.7101 8842.0689 1928.4023 5835.3852 2189.0319 3046.8223 8066.5338 5583.2294 5112.5378 3655.7255 3651.6104 3651.6104 9996.1265 4818.9596 6154.1423 6092.809 3293.6256 8307.7369 13851.7758 4497.0475 12399.861 2720.8491 5082.8152 6922.6235 3166.1679 159179144 b_lactamase Virulence Antibiotic resistance Degradation alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 146022.1349 34914.4066 78911.3786 130517.8051 62389.2402 20413.2016 105510.5872 73309.5019 43980.5602 164871.9202 80500.4946 56039.3168 24149.0996 80949.0139 343178.9176 100449.9127 128087.6121 128087.6121 69266.6441 112690.14 32634.3928 253632.2226 216016.7027 158847.3141 70220.7462 64022.9089 64035.0644 60804.3583 134048.3424 89037.3001 90898.2748 56818.4568 95716.4757 79858.6775 87078.8874 156322.9634 293369943 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes velutina superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 4305.8419 2876.4766 2276.7544 9025.9226 3553.2611 91537.9467 12636.5604 33060.7206 4301.9779 4647.5442 4647.5442 6888.4148 20677.0364 13274.7643 6983.627 4816.2503 3611.5358 4924.306 14005.4126 2620.0857 21000.8836 8676.7873 52216.3607 2975.3915 8023.9735 6377.5903 68510362 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17940.5444 17041.7398 10893.5214 15792.1991 4172.8808 12980.3018 2850.3146 10400.7164 22537.6227 6543.8573 171027.8365 17259.1763 12516.333 17103.3117 11292.5988 11292.5988 10261.2361 39536.4972 16163.4151 26201.0049 45154.3549 11960.2749 10919.3458 11704.7756 33626.5867 13217.2407 39715.6456 18781.3383 26208.7186 11151.6128 16536.2708 20293.7653 7371.2085 27382.3972 397890748 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas chlororaphis subsp. aureofaciens 30-84 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 253998.6445 160712.1283 898132.9708 220595.1587 17783.4415 87045.7999 236976.5913 120492.4596 73787.7814 138570.3667 111798.0319 1838854.4356 227026.6524 111004.3015 237237.8979 117369.5872 117369.5872 72975.3124 126607.3416 98841.2511 134498.077 184320.9486 74879.2971 93470.6296 73311.455 101889.2335 92321.7347 635749.8411 164312.2292 132705.2153 92278.1027 79136.8859 142547.8814 196030.2176 842045.3725 237686956 phytase Phosphorus Phytic acid hydrolysis NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 1062932.7163 47015.8771 14959.4809 11719.7856 6253.8395 40004.3205 9237.448 9730.099 11434.9699 15251.5306 6878.6357 379072.5511 10880.658 13685.2964 7857.5969 6511.4808 6511.4808 9018.5505 18633.1028 13248.9315 11150.7621 17398.2552 14139.0878 12775.503 6122.8185 16816.6384 11838.9408 21737.8264 7490.5875 15430.5842 7046.9315 7932.9603 15727.2369 6005.9144 18263.5452 209548034 ppx Phosphorus Polyphosphate degradation NA Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 41238.4192 9733.431 12041.4832 18618.1322 11004.9673 7887.128 35634.4652 21051.0244 22077.9503 25535.841 24130.7455 254267.7473 28255.7151 26322.4137 65789.6717 28770.1103 28770.1103 29728.7414 34395.121 15655.5572 69590.236 31401.2261 14195.3026 14751.1952 17229.8817 276709.5312 18147.8932 69882.2594 15947.0414 37164.0042 17592.337 46923.4354 35596.6813 12815.8553 27465.2653 335999439 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 5829.4053 10089.095 5382.1986 7520.8198 11021.2277 16943.8227 9374.8084 2543.5604 2543.5604 7094.1961 17349.5913 5334.7589 2785.5185 6408.4923 8614.4511 3687.9487 4063.1484 9365.0864 299527683 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 13052.9247 163655.2159 5286.5035 4238.2909 3709.4684 2548.6422 3019.8637 5701.3782 10122.6226 8288.5562 8288.5562 3574.8256 13759.7224 3914.4253 4135.1094 2912.7263 3892.0334 4066.8537 3853.5386 2673.3992 3423.6647 3467.3031 38876.89 114737272 linc Organic Remediation Pesticides related compound NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9169.2444 14929.2748 25334.0461 3894.2764 3207.5366 12816.7137 4224.9648 3022.3214 7813.0233 5699.3324 5803.9938 4198.787 10659.6356 7300.047 4433.9131 9025.4657 8907.2218 4195.7814 8447.4054 13777.961 3999.8768 13251.0713 8681.4457 79806.6036 5112.0014 5682.9895 5227.3691 3331.7633 251755993 RgaE Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 3848.1176 5735.1902 7918.338 2464.5382 3137.198 4189.7215 4162.2003 4647.818 6882.9802 9864.8497 9864.8497 2945.6381 11844.6369 6115.9865 10871.6556 4166.9897 4054.0923 2610.4052 6974.6637 4672.8803 9102.1324 4636.7681 8025.7491 2118.8371 4366.9724 2798.0373 159027940 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 20955.0095 10654.0227 19771.525 20034.8029 6761.1824 13224.1688 11632.4827 68883.5704 12268.4055 16214.3834 8777.0265 269700.5871 20630.4994 18714.5112 14263.8265 10238.1462 10238.1462 11222.9718 23226.7802 18933.5237 23331.7656 37799.1152 15038.1637 8006.4872 8719.9373 21394.8838 6665.1022 31732.7077 22010.4568 49593.8528 8715.7043 11415.7038 13767.0909 6970.6398 27412.5486 319784882 poba Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 76194.1473 27288.3564 47504.4992 39923.8187 11935.8144 33371.7133 29465.3188 23369.9246 51001.022 44874.0549 28627.6026 557212.2044 43684.7008 54242.1378 48131.9993 18397.9988 18397.9988 544849.1205 40467.406 36396.5167 76871.6723 48155.1176 57555.0848 29215.1305 20676.0994 41806.9179 24821.374 76837.5828 56062.3378 59856.7112 18312.9984 25471.6336 24619.309 17250.1437 187932.4748 358063376 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3967.2159 4167.7649 2427.9557 3257.595 2307.359 80934.1961 3641.2208 3814.7911 2045.4816 2045.4816 11223.4719 5577.352 3627.1311 5351.0411 7840.4052 2869.7699 6711.5038 2346.5551 11122.4641 5110.3018 7678.6293 3072.2417 3172.8032 3881.9977 6100.8903 378785702 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 4724.8466 168522.1662 11154.4785 4768.4107 3762.4988 4476.9319 2723.676 117856.4306 4564.0679 5522.2323 3322.3617 3322.3617 51625.764 8341.8051 6282.4739 5353.1047 7031.7644 16206.9589 3649.6724 5687.5569 5771.3601 2656.9487 10123.1659 11831.9985 11421.0463 3726.7584 4819.5594 4812.8318 6204.2486 379709026 alkb Organic Remediation Other Hydrocarbons NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 10840.4196 2497823.0939 12200.1061 127697.1394 2439.4687 78960.6097 3084.1998 14759.1328 19146.1528 8566.183 331863.0759 21290.4116 7041.6214 14635.2371 9542.39 9542.39 52369.9304 135067.2952 18439.4962 3277.2828 27719.1751 7096.4605 14962.7772 23058.1136 11628.6287 12200.2182 32381.941 30337.7002 21880.4208 16911.3257 8677.7902 41528.7941 10540.6121 320102576 amyA Carbon Cycling Carbon degradation Starch Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 24824.9457 28669.7413 11317.253 6691.757 10482.8802 11551.8829 9591.9272 21445.1699 157345.815 14881.8801 10138.469 12048.1773 8487.2001 8487.2001 12550.0683 28784.0657 3851.8853 13648.4501 4218.1941 7773.4738 6446.9601 14390.4002 12751.893 20909.0581 19879.304 7676.1259 3513.4964 9813.082 3436.2918 11975.4555 9898.579 353210191 fccab Sulfur Sulfide Oxidation NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 16396.7048 8619.4098 4788.6017 10885.9411 7085.381 34619.7634 3820.1355 9608.9582 7726.5192 16420.6124 12739.9378 9891.9339 4455.1152 4455.1152 2611.9643 25355.1748 8951.5933 18464.5658 248944.1872 12315.1624 6479.4938 6240.6862 5882.7036 32804.9249 5030.8309 4913.2803 12081.9742 11955.9022 7125.3332 14887.4496 8304.7445 345283420 pula Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis BLC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 9963.7717 54627.96265 8239.4711 22157.639 24038.24965 3522.39405 13195.10165 4515.35215 6403.36305 28303.6032 16417.8455 133641.09885 165224.2316 31528.43175 10185.20005 14820.02385 14820.02385 8396.3342 47505.0969 7700.1675 9102.4386 11998.59335 27501.60415 19495.40815 12209.6238 19840.2154 22455.53375 4785.32445 18326.69695 20370.1316 16430.3719 7546.9559 116193993 RgaE Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 13454.1451 32237.0772 6721.9654 10657.2968 24164.135 12959.1308 4065.4451 10902.6798 4959.2139 27336.9715 20087.7408 16420.7152 305512.2721 21627.0555 16121.9972 49111.6309 20130.7183 20130.7183 12325.3272 31898.409 13814.1931 11973.6912 23436.7518 16416.6394 6730.2099 13005.0542 175763.9206 12674.4894 63437.2326 16160.9748 35375.8354 10799.2943 12288.6047 22564.3755 6841.1569 23455.5004 339885144 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 14211.2809 4137.7493 74247.0694 7590.1086 3404.5298 58181.6882 16669.1922 5802.769 6085.6265 9100.9861 277418.3692 62448.4355 16583.6348 58043.1048 22029.2966 22029.2966 4445.3381 15185.7477 5834.5314 12802.0031 20269.8668 5058.8843 5346.7512 24170.1022 18295.1469 14158.5258 28198.0307 14736.0896 19798.754 4361.6758 8732.2112 14951.8072 5472.6071 85069178 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 829032.6476 36698.6728 45346.363 44836.9084 125366.5711 25726.5408 41440.7099 675932.4082 19134.343 37403.4494 48580.047 44641.9442 1142070.2828 52922.4209 75427.97 52007.1812 65491.4256 65491.4256 585091.7289 173187.9238 50923.1103 175017.3256 58636.4569 58652.2384 48537.4278 31194.7634 55127.1494 44748.5109 91202.1719 64778.3481 55704.408 30382.0468 206536.3695 39378.0212 515029.31 68229.793 116626375 amyA Carbon Cycling Carbon degradation Starch Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4927.637 5351.6242 6841.0114 2933.8125 3829.8788 2189.7303 4767.688 4027.0479 4003.3514 87095.3904 4585.4911 5920.2274 12132.675 12132.675 3630.1986 7727.2363 5298.1011 8242.8614 4976.2151 3921.4552 3000.4442 8756.5853 8316.6058 4358.882 10987.8617 4853.3935 6239.64 6516.8087 3807.9195 12861.0962 2819.1296 4676.5289 320334486 xylj Organic Remediation Aromatics BTEX and related aromatics Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 6276.0089 11131.5452 12975.0146 2177.0962 7380.725 3677.6623 22201.6188 8038.0825 9600.3455 98176.584 7070.59 11474.6599 4405.6067 4644.6362 4644.6362 6831.5304 12323.7752 8993.7239 1339056.2311 10356.9188 8606.9535 5589.6542 4225.9165 11435.1253 10865.3187 20259.8863 8049.5347 61696.4342 10999.5668 6199.8859 10121.1394 3280.7806 13636.295 113473679 cara Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 17965.3368 14446.9462 7229.2657 55140.5804 27201.9131 11473.2149 29703.7103 13518.9597 10958.3684 130314.6914 8865.0529 11476.7315 11644.6142 31063.7747 31063.7747 11724.7199 17812.8606 10014.5269 107309.8576 49869.1917 14691.2293 9815.2196 7133.469 14677.7253 33303.3895 22116.0457 21034.1682 44381.5086 25858.1552 15838.9043 75030.5703 29417.9221 17475.8401 388569939 pcpe Organic Remediation Herbicides related compound NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 6649.0221 35382.7553 7072.4292 31213.0057 7292.9588 7292.9588 7684.6299 12118.4624 3140.1714 6514.7495 28468.4611 2926.759 3337.1493 6938.802 18034325 dsra Sulfur sulfite reduction NA Desulfotomaculum alkaliphilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 3970.5178 441606.8319 17264.7963 4413.9076 3507.9743 24074.2047 4575.97 3206.2793 20883.1931 4525.1711 4525.1711 2456.2819 4338.3066 2451.5441 9819.6267 4041.5971 2755.0318 4844.2652 4427.5412 169793522 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 27407.6256 10925.6429 5706.8809 2945.0608 3968.1707 6457.2697 7531.147 4364.7868 121513.0748 14176.6728 9209.4388 5326.8723 4704.3867 4704.3867 6293.6208 12981.3807 7266.3316 7890.7789 11876.8593 12120.6382 4681.5867 3563.1054 11987.2418 3485.0926 20894.9876 5046.9993 11228.0013 4515.224 4770.682 5576.7498 3561.466 10160.1897 28853329 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 266090.0429 75132.379 403547.3645 1088248.5197 129573.109 23085.4517 111581.4413 146969.3669 176950.4871 110206.9894 155856.7186 110136.4006 1732994.8495 108441.8729 121419.6985 405538.9924 102467.2679 102467.2679 145552.6875 115848.9625 90786.3775 116055.1397 125162.0668 453451.3101 77118.2072 68889.6552 86905.893 96695.9356 226603.4145 152326.6123 106536.5744 59587.9918 119888.6271 112116.8189 103298.8186 156973.4395 315416094 arsc Metal Homeostasis Arsenic Detoxification Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 9211.9418 17555.1273 4966.1836 6646.9206 4002.0004 9045.5858 4900.0451 4218.7919 13060.569 58822.4447 5628.9384 3067.537 3067.537 4677.7451 13960.2656 11691.9775 4256.0062 5349.8395 19159.7817 6777.8649 5533.8275 15722.4956 3581.3969 18117.041 13708.383 9155.4475 4842.7155 12163.671 32995.7015 4736.4765 8914.6456 372984252 cysJ Sulfur Reduction NA Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 4602.9351 7384.5094 156976898 amyA Carbon Cycling Carbon degradation Starch Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 155012.6844 27345.8452 69911.2363 592066.0907 33116.9983 1278851.7746 184607.6457 315114.6556 41126.0232 78121.5206 84044.2918 128975.7977 943856.5256 80052.4813 114902.8473 74507.1684 48125.3179 48125.3179 61888.6208 113772.4681 44968.953 169564.6172 102173.2829 87469.3944 128080.445 44062.3495 97092.3477 143639.7175 127876.3189 60697.7583 73317.7256 102107.8317 72918.6511 79937.8066 55898.5851 115501.7974 294677306 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 17765.069 20409.0657 7188.247 19789.3772 7729.6174 4427.0046 11249.306 3835.0668 11953.0541 11779.2967 12680.5014 3370371.4581 26474.6446 14327.3601 43968.1041 13801.5359 13801.5359 19072.304 61670.9351 10423.4358 16000.8574 50524.9898 26787.5303 9876.0275 20683.5531 48565.6278 8848.3745 56286.0733 31036.7483 30962.2441 9616.382 18313.7005 41664.278 8139.0902 15569.666 38638533 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1086014.2139 142443.6062 485654.5109 75762.6354 410125.0668 41447.1256 188458.3084 633500.6663 168370.7485 289177.3801 299655.3218 273299.8824 5781388.9132 227841.0272 363724.4855 750058.994 356975.7443 356975.7443 189607.0565 372532.0567 205890.733 456924.9024 525905.3646 657523.6533 222917.1455 176683.3952 320853.1635 154453.7809 448420.8926 355413.1095 271147.6679 201240.5311 196715.9731 241411.8826 191041.3569 715465.6947 146401765 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 142370.9209 7359.9637 23038.6978 19030.6961 5058.477 55790.7062 5580.772 6573.591 10195.6745 20584.5889 693169.5304 12996.6735 34361.4321 29727.424 20795.4083 20795.4083 4808.1278 45898.9835 6854.5467 16710.0369 26765.8593 10515.5138 9405.4791 9624.661 27017.2311 32843.2336 42237.8935 119897.3561 21646.8388 6944.3224 12472.6985 27152.017 8303.1739 16723.9369 379988959 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6486.5509 9808.8594 3452.3044 3310.0803 14789.4562 5704.2123 2951.7291 2951.7291 2969.498 5783.1153 3736.6521 5216.6183 4263.2681 2362.6557 6049.7662 2070.4657 9266.9705 5193.1321 1842.1834 3501.0517 2723.5688 7024.8885 58616669 nagg Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 8687.5703 9438.5744 5974.4684 2633.3529 7004.384 9234.5134 3467.485 70878.7869 5477.2934 4072.6438 4947.1375 4947.1375 8336.4689 14059.6284 8303.0756 10138.7646 10635.3437 8247.9013 4871.8826 3402.3887 10222.2926 9926.2668 14475.6472 10097.9665 10289.1471 2980.0863 4737.1101 9599.7104 4069.6851 8750.5721 355536679 xyla Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 39363.893 8060.7053 27616.036 12659.991 8182.4735 14102.228 22110.7173 29233.0271 22317.4979 21776.0958 16413.799 452907.723 28789.8471 74426.7884 37838.0843 17066.2685 17066.2685 19086.409 36980.7754 24063.5552 28304.6112 63264.2419 41439.1437 15084.0958 16514.6275 28737.3834 23733.3448 41978.349 34441.8483 45138.1856 14527.7471 22829.9354 30317.2192 17966.4985 35885.3368 332377262 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 14928.3836 290969058 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Megasphaera genomosp. type_1 str. 28L superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 10323.9243 6740.0579 14257.3495 6312.8681 10159.4735 4229.4073 19944.7184 11852.1315 5986.1425 87287.492 7419.6512 9460.5198 9346.7548 16130.5343 16130.5343 14010.1637 9421.994 10199.1766 8853.3099 8056.4844 5596.9116 8765.7098 6843.4859 9319.294 15809.7057 21745.4251 19000.8018 16916.902 7226.6218 25511.9108 11443.4574 25787.0559 9763.0811 342808037 amyA Carbon Cycling Carbon degradation Starch Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 4797.4466 10305.8923 4009.9337 3435.2447 4312.9187 10767.7487 3978.8983 4428.2317 75152.9924 3708.3798 7550.7218 9660.4693 5301.8899 2561.2332 3653.2138 5940.4095 2596.5407 9387.4569 4888.9838 7351.0376 3754.8338 4946.3278 3216.8634 2472.8932 7738.8896 170769194 dmsa Organic Remediation Others NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 4393.1705 8020.7064 5885.0925 3584.729 2900.7742 5689.1553 8465.5305 3416.6165 192554.8127 4222.0961 7770.4483 2329.1113 2329.1113 5606.3719 11223.8717 9328.1678 6299.6273 14876.7745 13170.6587 3800.6703 5283.6856 11478.8645 3603.9217 18217.4756 11098.2767 12452.5837 4917.3664 6140.1772 6914.0964 3806.5891 11980.5808 75993827 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10152.4863 4879.5245 4345.0822 8377.7934 6002.7899 3610.338 1982.1569 6105.428 36768.239 3804.491 142291.7543 8740.0328 6662.0619 11250.2357 4431.7579 4431.7579 4012.4796 9964.9561 13248.6505 8741.5854 33465.3181 8208.5218 5986.5673 9694.0051 23757.9363 7822.1709 19937.3784 13132.6399 11485.1035 5365.7054 18093.316 9758.4594 13757.1588 11911.7579 237728154 nrfa Nitrogen Dissimilatory N reduction NA Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 10566.5227 1970.7282 10694.1834 2274.3696 5479.7671 5954.4242 23106.6643 5475.4129 3528.8138 10085.5741 10085.5741 2897.6879 8696.3031 5330.5555 5322.7788 5788.0877 5787.9084 2473.7824 3442.7437 9160.8118 4047.383 14807.0023 6983.6987 10861.8175 2265.7297 7177.2321 5059.2969 2858.3655 6636.9061 190346340 lipase_fungi Carbon Cycling Carbon degradation Lipids Pichia guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 5843.17 12101.9829 13784.6224 6012.3208 4294.2844 8889.553 6888.054 4722.1721 122478.7219 28242.3225 7410.9932 13985.8907 4477.7325 4477.7325 5373.9321 19676.6708 11226.8544 5095.3137 15422.5736 10166.5512 18946.9481 4057.61 15920.548 5537.3768 18834.6164 12446.1366 10966.7384 6107.5375 5169.943 5021.1986 5873.3668 7688.5704 358636502 terc Metal Homeostasis Tellurium Detoxification Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6205.0053 8908.1427 5193.1527 3772.2332 2355.0391 7701.7235 4081.9666 9014.0123 84315.502 8586.7467 8839.1282 12105.4765 4004.9722 4004.9722 3919.1427 18167.1578 14334.7663 8840.5124 7635.2606 468697.0318 3454.3815 9320.1366 7214.5979 88012.6816 24259.8474 5578.9566 14229.3809 6249.8102 13916.1697 8259.2161 7293.8146 6211.0185 14715450 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 522590.3358 49878.9736 407340.7043 250070.6647 271050.1165 162668.4172 347437.3989 319346.7302 529821.4561 246922.348 346334.9236 302982.7228 6185662.0487 395473.6693 674633.7725 620230.1559 381023.3192 381023.3192 299210.719 705800.7757 217020.1297 680059.3718 553173.8954 705400.9164 361311.7063 230622.3166 553551.3864 258314.5448 874294.8489 609641.1015 471948.5167 319023.3873 252510.0759 271457.0259 264348.5187 1197721.6281 317507404 cutinase Carbon Cycling Carbon degradation Cutin Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 1026135.4562 7468.6034 7217.3399 9032.6683 9641.2082 6734.5755 19817.0301 7344.6539 10427.3334 19734.5654 33456.6567 1064725.8933 42569.8705 46338.573 27980.7438 92768.4285 92768.4285 18308.4399 40058.4309 23396.8456 20207.8979 112951.1074 28380.54 15803.4938 31946.4677 17686.1891 89435.2735 27869.5 32608.8302 38557.3604 14871.9616 28096.2748 23951.5189 16349.6242 15276.1106 302423574 ppx Phosphorus Polyphosphate degradation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 18944.2367 9605.6823 81463.5286 242065.3441 5223.5181 7964.1227 9764.2456 7140.4993 15094.2649 86992.4273 11366.7242 303443.4317 27101.9064 16490.4039 13414.4194 35756.2276 35756.2276 10695.9303 21874.5879 11469.2569 13586.9046 20764.9405 23722.4479 8733.5174 7318.4389 18847.7303 9301.6345 24500.4573 6367.0213 19361.0602 9089.6967 10243.7691 11473.2665 11182.0677 24248.8369 197294932 mer Metal Homeostasis Mercury Detoxification Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 39610.9917 24017.7368 230655.7446 33792.8583 6556.377 29368.839 20548.1156 16286.8298 24320.8345 167160.6043 53239.2747 12411.4073 27888.605 17008.2881 236907.9667 72684.1314 72684.1314 33968.8505 69019.0334 28908.8886 41662.8712 91465.6053 40583.5165 29263.1622 46702.5806 38695.3029 31457.6913 83243.6997 68089.4124 133299.6765 18566.1802 40000.4497 34934.8262 43761.4168 76852.7308 359419822 cutinase Carbon Cycling Carbon degradation Cutin Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 12302.4292 57644.016 11154.0367 4818.7787 57694.3134 10943.1615 10917.4917 16893.5382 11430.1346 29327.5466 224769.5327 13710.6743 12543.4352 22911.4573 12909.2528 12909.2528 31753.8296 24200.0208 12737.0373 192071.1615 41257.6277 18039.7689 13639.099 11947.6275 19093.0876 13586.2519 38774.1583 24563.4649 17257.5836 13272.4642 18994.152 14655.8908 15327.3283 28764.8055 326949820 cueo Metal Homeostasis Copper Detoxification Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 23389.3477 12332.3563 11188.8121 6332.8516 9132.1379 6497.8252 11084.4536 12782.0726 4363.9929 173715.0621 9747.7474 9488.0238 9404.4459 8421.2514 8421.2514 7778.526 20795.6178 11932.1149 8908.2721 10258.5105 11279.4263 5277.9783 9003.2053 12549.9911 3815.6968 25749.1345 7775.8962 17784.4847 10299.4849 8152.1369 7627.8947 6764.1306 12914.2814 269796436 glucoamylase Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 570935.2515 33416.1955 192228.0074 381413.9601 831884.7005 172837.3751 349763.6387 233628.8251 355446.3863 252187.5332 388157.1217 188531.635 218616.399 307700.8554 178586.3069 604189.6723 275088.0846 275088.0846 143404.1792 287898.1537 97109.4863 287192.2306 579503.3837 386498.6799 427291.3759 211133.471 284685.2905 142518.1489 354728.9012 217565.3425 272510.4825 169104.7815 144197.0256 181919.1124 231105.7963 215399.8862 84778339 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 37864.4133 32029.3589 39386.8958 62739.5756 58984.5722 60832.7371 195843.122 31969.5445 40526.3401 31036.6919 37435.3141 24369.5085 634874.9524 57309.1225 44431.5026 52021.761 38079.7072 38079.7072 27409.1051 51572.4995 32890.6043 40019.8094 50581.8883 61772.4222 20470.6229 21470.1109 41039.4411 23969.8732 73874.279 23335.8131 55117.3157 22022.3294 25831.0458 29250.7799 21770.5471 43036.6587 353451579 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium abscessus 47J26 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 39435.3525 18804.3181 27737.2438 29911.4856 40759.7756 32898.7138 37944.2081 23863.9565 9164.0926 22382.1433 20640.698 15886.7103 319379.8025 19255.0075 47887.7402 43057.1052 29920.6186 29920.6186 13542.4521 23918.3796 13692.5371 15044.6966 30209.4673 45589.4604 10662.4321 17028.2473 31209.4478 9872.8116 25495.838 16173.0118 31925.6484 10799.3231 10971.4445 13755.2042 10148.6977 33364.7942 26278906 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15323.2697 319403.1162 16113.0501 4903.4142 7216.3295 14824.9994 13329.5009 25217.6749 41939.7657 209807.6718 8942.0532 10176.73 28735.6814 18777.1969 18777.1969 35020.2559 44803.2347 19476.1774 9763.744 13621.2988 40246.868 10219.2178 19785.0658 15317.5437 23310.8121 34971.4759 9344.297 21426.0925 4969.5615 40955.6679 18143.9928 18751.0611 9256.7747 192764394 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7818.6268 7362.39 1863.1177 8992.4724 4645.3162 2337.3731 55765.3808 7823.4916 5623.7596 16728.547 6521.6661 4382.7457 9775.7819 6817.3564 2582.0716 6619.7045 2092.2021 14234.2187 6275.7257 7285.0457 4932.8244 10529.654 6346.9512 3755.0581 13705.3995 206677247 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 20182.5069 11978.2094 7634.8243 8838.6632 3765.2299 27540.4449 2404.7171 14169.6704 20400.3957 26356.2382 208176.6205 10040.0179 8694.1495 4143.9074 4092.3803 4092.3803 21687.6649 21611.5489 14644.8495 21747.7838 21388.1066 7729.7298 10125.9739 15025.8937 17808.4048 10441.4133 96529.1764 36498.295 18099.1487 9681.2541 7149.1741 9236.8408 7562.2854 14208.1081 357388903 urec Nitrogen Ammonification NA Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 194038.6905 18799.6852 168840.1034 92098.2748 520399.9287 46330.959 68964.7673 490564.0246 218927.4518 578828.2272 593698.7215 270249.5794 2959121.5472 152747.709 240169.403 171116.8076 306226.1272 306226.1272 545521.6143 152645.8446 141941.7013 289860.2626 317184.4039 654990.8593 103541.2252 114101.3427 277527.1494 112500.0732 277559.2069 412411.2406 349917.9898 63196.4246 108922.0739 251602.9253 117257.2554 149714.6147 118730375 atzb Organic Remediation Herbicides related compound NA Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 49386.1237 15061.0651 36070.4885 8768.0733 7947.9551 41473.6863 3422.1043 10102.964 11868.0344 12126.8887 242265.349 17728.2069 28611.5957 25395.7383 23479.9855 23479.9855 22997.4665 27293.4787 9883.2068 7890.5166 9545.8763 14242.1454 6001.9316 9236.9926 16221.2446 22682.4815 29702.1792 14162.9127 13745.151 8051.974 19033.2416 19009.4008 6059.5863 6675.3784 257460805 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 4740.2326 8195.2717 2889.9949 5041.7125 2551.5683 5473.8822 2276.5933 2276.5933 2977.204 9905.7791 5163.4182 10910.3196 4285.4804 1692.2986 8977.645 4650.7526 328803714 cysI Sulfur Other NA Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 11006.5614 5584.3061 10768.4977 17095.1479 8317.8376 5553.6574 6042.3518 10082.98 14607.9954 4643.3329 207226.8679 14299.3863 16617.461 4814.4234 5043.3748 5043.3748 8830.2526 17727.2551 11230.0737 10121.3244 12396.3857 16210.9502 5620.7305 7357.4389 15697.5489 5988.4432 24324.4365 15290.8427 15744.4321 4855.5975 8724.3856 9285.4542 5129.0959 27712.5093 380714489 cara Organic Remediation Aromatics Heterocyclic aromatics Caulobacter sp. OC10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 45474.6574 28277.5063 37888.5404 37700.883 218568.8147 24540.5324 33524.79 32608.0543 44687.0214 76599.6966 112742.5991 42675.323 1140114.039 125263.4286 50250.7486 80713.6534 90475.8239 90475.8239 37326.2899 175362.9206 43408.3016 101996.6161 114366.0859 71434.4413 26631.4222 47043.5063 59729.874 53396.9471 146884.6489 52402.3132 67153.1638 22768.4307 60274.624 48195.9172 110807.7022 67670.4436 373880181 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 40646.1139 10731.0248 26762.0734 36933.3421 33959.1134 7549.4722 16647.0392 24103.1536 22616.254 22281.1148 99026.2397 27511.9249 627755.336 104800.1803 205379.09 60810.4035 55180.8066 55180.8066 20631.386 56589.4178 27136.271 31904.1472 59873.6257 36285.4997 18674.1234 18664.2291 41888.6159 15815.1564 195723.57 24430.6091 59565.7039 12198.1553 41586.3532 26489.4194 16255.3229 39980.4853 254227803 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4384.5034 5721.2631 4622.2083 7992.1053 5107.7437 2348.4282 3201.8419 145222379 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 89927.3808 89192.616 7773.4893 14700.6119 48499.5836 160488.4556 117437.9009 38318.2832 105944.1306 78970.0114 69488.3495 1581912.2264 36213.7996 51749.5883 73777.3833 77323.0833 77323.0833 39773.8346 103292.179 43534.983 214415.5116 47067.2268 156649.6448 107142.9813 64016.6975 53832.2241 87898.2264 82440.5372 51338.8259 81837.656 57238.9833 92946.1786 251601.4847 61931.7334 102667.9595 23013190 dsra Sulfur sulfite reduction NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 5085.0793 7621.2083 12166.7657 4387.6941 2435.859 3873.9781 98632.8172 7984.2187 3494.8027 6625.3521 3986.4088 3986.4088 3562.3682 6299.9349 5468.772 3840.5784 5927.0243 6947.9809 7305.0958 2161.1752 4826.4931 6694.8453 3820.8998 3273.4633 3331.2183 3329.5978 4233.3299 134079039 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4192.9783 13234.9421 10064.6994 2693.1512 2810.435 2810.435 3677.9939 26405.1799 5184.3453 2148.3517 2431.9915 238873146 amyA Carbon Cycling Carbon degradation Starch Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 5131.8863 2114.1682 2527.8057 4348.789 4129.4451 83143.1234 4597.1433 3487.8161 8179.2945 5741.549 3913.356 9878.034 5388.9375 2705.6674 3154.55 8547.5697 15222.3889 4825.7203 6720.6884 1987.4062 4616.6182 4311.1843 2888.1215 6345.9024 119391455 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14556.55 8376.8915 15811.0915 16125.4399 37062.9848 4333.2953 13041.349 13031.6765 38765.5679 445541.927 15282.9325 11202.7915 13340.9657 7555.9706 7555.9706 16083.3106 27939.9534 27495.9662 10232.4145 16053.1533 12426.8305 9632.5231 15666.8329 20551.3742 11730.5351 22315.7144 8967.6532 31143.4148 11604.2728 16535.2828 16440.8123 9039.003 15601.4811 13474797 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 13384.3517 5959.9655 7702.2215 34097.8652 15917.2309 12220.7074 42315.4427 33779.8857 17784.1386 85886.3388 17360.7219 305984.9951 17217.2865 21129.1903 16039.1154 13326.0821 13326.0821 27367.5319 35257.2743 25200.6514 13252.7895 28808.7397 11422.3951 8087.0159 15037.3985 26720.3312 11781.8794 39818.9707 30279.7823 65479.3776 10891.7074 14059.6173 12977.5558 13909.6641 14306.4806 164455306 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 26610.5563 18839.0035 9650.4436 32276.6832 23835.9257 16482.5857 46696.2075 34316.2937 21386.2498 17551.1929 25607.4899 19026.0919 500378.6951 29962.505 51411.2666 68930.6868 13514.8089 13514.8089 17786.8533 52617.1858 23730.3816 47267.7403 42772.5028 37026.2354 21885.1901 27700.9004 29260.9249 39290.6145 79748.0201 67480.9555 34411.5209 17791.2741 21258.7515 20544.8067 18379.8002 33537.9749 149196318 nrfa Nitrogen Dissimilatory N reduction NA Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 7432.3811 10120.6563 6549.5221 4212.1478 9007.358 2927.9519 5118.7083 8567.4686 5588.2526 88183.9772 8767.4443 4500.6548 2757.6546 2757.6546 5826.908 8626.5788 7439.2471 6912.2386 6546.884 9444.2732 4566.904 2957.3418 8488.2855 5196.0861 11640.0037 7177.5698 10320.1981 5427.6194 4755.1105 7074.4958 2919.2686 7917.6504 328544739 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 16015.4104 32001.3528 7137.4351 6799.4899 5136.2476 5012.4095 20653.0236 8575.0282 76777.6129 228378.5368 14501.6805 13224.3845 14867.216 12747.8627 12747.8627 6152.8558 18567.6025 17375.088 23031.3603 33389.1305 10202.9949 5375.9551 9147.4201 10268.575 10746.1225 28667.1403 22456.2932 13098.6004 8880.4834 15032.3334 10561.9393 8353.8516 15542.7816 36786085 ppk Phosphorus Polyphosphate synthesis NA Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 42441.4243 94737.6465 450462.2113 35260.8765 35429.7652 4956.6594 11898.6818 35129.9075 14705.5743 24428.3863 39401.2306 28005.8119 1871856.5272 54349.0461 25590.2029 23673.9503 74281.9532 74281.9532 14330.8695 42508.2097 36831.9384 57303.7714 34708.3974 50802.3668 12238.0306 32991.1506 30500.7125 25142.1266 55049.8502 42186.5322 59902.9498 11780.6679 28718.0403 29351.189 14922.6224 40594.3271 359148658 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4161.7336 11350.9856 2973.839 1878.1543 4994.1751 5026.6124 3996.283 3362.5744 60827.1408 3869.6163 4328.4668 6640.9908 2573.8997 3274.7514 5047.1022 72121176 hbh Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 207385.8281 2254365.0802 50695.2253 109709.6957 42630.3571 5090.5327 46278.0968 44998.8614 11204.6266 17499.1384 14915.2978 46443.8931 550895.5627 29785.7303 35062.2347 26993.9418 56470.2133 56470.2133 93452.9474 171199.6414 67202.6185 124983.7041 56648.7509 130132.876 34318.5026 22496.2986 27945.4091 139505.4797 101194.0495 29481.4665 135689.6524 27848.0888 130658.7114 368641.9854 39652.6463 38743.8485 372000035 mer Metal Homeostasis Mercury Detoxification Rhodococcus sp. Mel superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3707.9489 5748.3863 5498.2792 5311.805 4440.4762 4640.8639 26073.08 9459.8099 1310875.2198 9914.6249 6296.4385 27257.3991 27257.3991 42252.4862 11816.7031 4410.9254 5159.8082 10193.2663 12200.3203 12858.3255 12766.9569 7330.2824 13668.7518 165537.2789 10604.0632 9116.4355 5617.3507 5504.8553 13534.8348 10220.6536 7543.1749 388463430 arsc Metal Homeostasis Arsenic Detoxification Planococcus antarcticus DSM 14505 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 10726.847 7953.5427 8902.9802 9740.7563 16699.9818 7500.83 7043.3606 2878.5462 151883.7115 5305.8707 25665.4845 4872.1604 4550.7446 4550.7446 3352.8685 9600.4 7303.1454 40571.1176 5803.8005 18534.0985 3693.2272 5161.4114 8520.1114 9912.5775 21274.9752 10524.9795 10576.3443 4798.8999 6821.341 6769.0607 8875.6329 13490.1245 365884219 xylc Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15486.5246 5387.4336 12659.6076 12624.4996 5512.5593 9151.2953 27853.765 166666.2037 6981.0096 40735.385 7227.248 22006.2701 22006.2701 11756.1987 8216.1819 5515.9433 10620.7488 36032.2888 4603.435 3100.9805 14011.0612 10558.3046 22948.8621 31645.081 10921.7907 11460.53 20759.8683 10945.3991 65639.3422 5578.0202 19477.2984 284042061 arsm Metal Homeostasis Arsenic Detoxification Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 361840.8213 338922.992 278613.1315 393491.6484 84402.8511 51208.9506 316230.7588 354769.5692 235592.1962 296735.8246 200466.8046 267875.0663 2421434.9955 264518.4075 850101.2762 199089.4962 336284.1952 336284.1952 171634.491 260837.4125 76487.3563 210530.5362 262967.7141 686455.2909 207134.2507 197287.7686 219381.0736 167538.5384 694908.1825 271380.8692 304844.5449 113959.1077 157175.8434 286677.7933 306780.658 187641.4567 302459996 rgl Carbon Cycling Carbon degradation Pectin Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 221712.7019 424620.3018 1624263.5 324240.5416 74777.0313 30999.3411 60610.3507 223854.6801 131923.6635 174094.0076 139678.6691 2537753.3212 276858.9008 394088.6203 183306.4191 131858.2624 131858.2624 98663.8324 163277.7676 60327.0987 196323.1839 368145.0411 73704.5322 97380.815 152224.2666 176585.7893 116650.7195 198100.1097 123050.5372 105556.6391 30189.082 120597.3797 106687.0485 58865.3161 181244.4963 295899912 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 11854.1239 6135.0579 11351.7844 9569.5778 94511.4019 8295.8212 10051.5862 7961.6121 16957.3308 7631.4136 207934.8159 12829.567 18818.0839 15206.2122 10884.7748 10884.7748 11470.3381 68835.0554 11855.2664 28084.8753 71766.9256 9730.3887 4135.6066 15905.7374 13275.6167 4359.0236 10901.0472 10369.8023 11634.7604 6984.0783 8277.3189 19890.8622 7196.5066 130824.5339 170745419 APS_AprB Sulfur adenylylsulfate reductase NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 34511.6878 9411.449 6886.5049 5355.4194 2506.5064 5779.7625 5106.5765 2721.9057 176255.0782 7743.4483 5956.576 4389.8644 3257.6476 3257.6476 5018.6777 9437.8842 7368.611 4374.8576 4088.984 15354.7477 3440.0726 3643.7937 11802.238 4258.3684 18730.1656 6814.0012 10080.2236 6553.4681 6424.5019 5463.4554 4154.5871 6224.0631 260597160 pme Carbon Cycling Carbon degradation Pectin Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 10982.3427 5184.5322 5067.0366 8195.7619 3956.7532 4071.4412 6522.6023 9496.0753 6833.9334 117459.0969 7749.0436 5564.9246 21359.7715 11008.0338 11008.0338 4679.1735 40956.3402 12837.8441 4311.5434 27274.9209 11603.4201 4504.0842 4291.554 11731.2387 8313.085 20449.93 7897.781 9973.1112 5257.9005 17938.6767 6663.6536 9332.8164 7073.7191 300446093 dsra Sulfur sulfite reduction NA delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6354.4165 11601.2776 8033.7574 8943.0267 6409.8711 6588.8251 2715.8425 6823.885 12117.7006 3220.7656 3220.7656 9391.4391 9423.4848 5126.1353 7006.6497 4672.3056 5275.4759 8291.3339 2592.5678 19836.3219 10310.6402 8878.52 5933.5108 6134.9392 3661.8033 10291.5246 333117332 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 7572.9536 10790.1494 5254.8192 4293.3035 9238.291 7024.0203 9384.9545 5336.7286 171188.8715 16683.6813 6511.3415 7478.5122 3873.5207 3873.5207 9370.5684 14129.0915 8572.6247 14327.8171 10248.186 17629.8081 4272.358 6296.4765 9565.6933 5628.3506 19087.0583 8571.464 12007.2469 8850.3503 15381.8821 10795.7752 8250.3756 16321.9665 314967426 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL037PA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5562.0811 24180.9853 6193.8829 4273.3624 3541.33 12900.2435 4750.3875 16882.9625 20184.7115 6584.7146 2893.4441 2893.4441 3490.2648 21468.2554 8387.5754 8826.7285 20934.1662 27882.963 12381.1505 3105.9546 9553.8242 7302.6663 15368.4699 14076.653 6598.6275 3428.3995 5062.2901 9853.7477 3444.3045 23889.9504 170516854 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 10888.7916 13091.0827 6828.3551 10277.4748 11624.0343 9388.4302 9566.7935 7087.6339 16861.3281 16950.3441 11392.8593 307112.1362 17051.8132 13433.9761 5550.4018 7450.4716 7450.4716 8673.0517 25635.6011 17249.3867 69671.5977 20291.3552 22720.1774 10585.3653 7567.4343 19572.1806 36702.3226 29684.0026 25150.6554 26141.6785 9246.8906 14213.714 15124.8989 7816.4524 22787.6671 254271903 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 25120.2924 4956.9184 10453.4465 5619.6025 2943.8419 4072.7953 6102.6782 8607.4709 4285.2558 110154.4362 9709.5233 13672.8187 6412.6258 6225.6564 6225.6564 4494.0416 12233.2717 9438.7849 5458.385 10327.8569 8928.7871 2968.4845 5928.8649 9934.4017 3361.2803 14732.945 5493.2373 9968.9288 2866.9638 5073.1398 6814.9781 3912.016 22861.5884 389860881 amyA Carbon Cycling Carbon degradation Starch Thermogladius cellulolyticus 1633 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermogladius;species:Thermogladius cellulolyticus; 27473.8838 21078.8109 31110.9898 9695.9242 11847.9739 20659.613 54184.1651 24448.5543 29785.4072 29892.8512 27325.6454 656385.4468 37700.3857 38881.9189 38967.4619 23816.4084 23816.4084 340903.4873 39023.2554 22578.6898 30443.461 35640.0254 43270.6019 17718.3047 19195.4609 47273.6125 29929.1064 85722.6145 28637.4131 63825.4455 17786.256 28974.4682 21743.6677 28864.0429 38853.6277 357394269 vana Carbon Cycling Carbon degradation Vanillin/Lignin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 83381.5041 19730.8416 24370.6946 68522.108 13703.3224 227472.4526 30234.8723 23497.2969 7075.5245 19043.9077 30029.4688 175055.5145 28177.1159 60999.9273 74840.4701 15992.9686 15992.9686 8569.3685 47304.1623 4872.8683 139380.2766 19038.1374 5101.2878 45514.6543 11253.5801 18619.0164 11272.3572 84256.0534 20705.6826 21828.4989 31906.9811 9839.8358 66790.4721 8205.0515 6237.8448 343523044 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 319212.7273 125411.2912 366296.2044 153476.4957 860042.9382 33939.7835 103833.1889 327873.7365 252593.676 227984.6938 197096.8197 337981.7105 2543024.6896 238516.5997 219744.1645 290870.9496 212725.8021 212725.8021 282846.9821 408547.332 181522.4613 251983.388 400517.9366 283412.0053 231653.5988 165105.0598 226810.625 208555.6637 496356.4955 503714.8118 283099.9663 461568.7111 194173.9448 314511.4872 119419.819 403904.5319 364573786 cueo Metal Homeostasis Copper Detoxification Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 7865.6024 8002.2152 24243.717 7423.3947 61499.3013 8908.2613 5315.6161 13765.6097 14378.4485 373075.9717 8679.8233 8810.3821 13187.2828 22623.6465 22623.6465 3452.3665 17366.7611 8573.7588 5403.4008 22207.5056 5223.132 11189.784 9051.7638 12900.9413 14074.2552 61017.9124 11373.2429 9396.3135 5314.7002 7163.0417 11646.7926 13476.273 37831.6839 325536974 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 62800.4663 14026.4853 61261.2719 126457.8516 40860.5853 11052.4424 77685.3466 42328.8326 60392.6978 41103.7885 155205.868 31720.7361 951812.7109 255139.4739 36514.6367 39928.5589 70811.115 70811.115 58721.388 62055.6905 89265.8588 133756.1353 156531.7614 64671.3919 36475.1633 52798.1008 132525.7275 46750.4087 106995.5917 56356.3703 53036.3429 22812.5536 52158.6188 43826.6864 50292.907 889414.7753 209401648 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37970.4714 208365.3408 12469.6527 117266.8624 30633.7153 21077.6792 37435.3559 54441.3445 19108.5781 39454.029 29036.0976 545175.6983 38371.2037 37118.3472 39558.2059 26777.2179 26777.2179 13630.7182 42443.9649 25689.9669 24783.9968 33948.4166 30406.3249 14549.8039 17999.2015 42698.9385 14597.0278 62887.4013 41741.2032 49258.0963 16655.4509 31074.4061 21087.1836 14740.9161 26228.778 196182790 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 11747.2074 13572.9465 7996.357 12669.1197 8336.7804 8330.0939 11351.8453 11980.1782 5870.4889 250182.3485 17890.8202 11484.3302 7556.6585 4911.4095 4911.4095 7642.2044 13940.9365 11254.4875 11355.6553 15244.1243 12288.5693 6508.4744 13165.5784 11053.2331 5960.13 38700.3529 11710.5838 13804.9605 6883.487 5481.9844 5940.8577 5989.0783 18179.1948 379988747 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5956.7457 11529.2264 2011.1285 3060.9575 2471.0233 4902.2735 10994.47 69942.9601 5115.6508 11678.3 2542.4252 8629.6484 4933.4588 3755.1791 5615.5753 6973.5569 3380.5007 3080.7689 6040.64 3116.8405 11633.3968 9013.851 7977.0391 3662.5472 4022.0439 5089.394 3336.4852 4833.9168 148547940 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 20409.1775 12557.0544 23320.0673 23948.3453 10583.6963 13298.8311 10105.4573 9020.7423 14530.589 15298.9764 94930.721 352494.1906 21110.3475 19797.1775 13968.2817 11881.4345 11881.4345 11416.4008 22546.3087 20151.5493 18180.8121 22620.1253 22564.1065 9021.0134 10413.5516 20727.4005 7873.3826 33685.909 11633.7084 21214.0685 11055.7158 11517.6248 12387.2787 8750.4105 28844.9614 223586061 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 191264.8552 11989.3011 68107.1609 20265.4993 28641.2406 7165.348 22383.0131 26284.2957 48123.4694 47177.0369 61694.3817 83948.9283 566534.2025 102584.3402 51811.5723 107693.8747 61568.1681 61568.1681 80023.2932 86912.3286 38834.0676 223659.0828 126003.7562 63580.5462 115565.9963 51053.7798 72412.0912 107456.2151 119634.7145 58576.3786 75441.2149 57043.7933 83806.6735 121841.9331 57390.155 118171.2195 167566792 b_lactamase Virulence Antibiotic resistance Degradation Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 16912.6853 3262769.4391 977888.9862 6304.2709 20252.2916 11985.2202 7509.5809 16223.6161 7340.2682 10480.1519 10371.1141 209891.4652 9445.3334 24348.2425 7815.0995 7815.0995 6115.1574 20119.2645 14986.1701 13433.8926 12549.44295 13801.4674 6916.31695 18725.1798 11097.3577 7484.5717 19511.345 13962.5669 13063.9773 7208.01735 11078.7568 4566.4694 199379.5278 383704394 norb Nitrogen Denitrification NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 11045.1069 8234.6042 41712.4868 30172.767 5670.0956 5818.8408 6495.1412 4754.3513 8262.1712 10068.3107 6287.1522 268951.7997 11570.0567 8430.9419 14081.7054 5262.798 5262.798 6258.0577 26844.9187 10806.8922 12119.4899 12857.9597 12881.6206 6354.2967 5312.948 19736.5383 12369.2842 25666.2832 10421.7618 18877.3472 9128.2922 8572.4442 7742.4117 6912.7356 18608.4089 226715429 phn Organic Remediation Herbicides related compound NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 9344.066 21816.7557 16352.3647 2971.5863 52789.5964 12992.1295 52166.4221 11260.8056 8859.685 11598.9075 12823.335 8961.5105 8961.5105 32724.2609 5516.7405 4225.2083 6137.9225 5478.1197 4723.587 11118.6028 2964.2622 31687.9178 53018.576 26032.6598 41530.8583 9181.4511 3698.404 8750.8851 45857.2558 47650.5572 17998.9503 253781283 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 10566.2628 6033.7261 12072.653 11118.8893 5638.1553 7272.8617 2879.1827 10165.9937 12039.6853 4476.2403 230709.5148 12307.6476 11129.2058 5484.751 4435.3833 4435.3833 8543.2779 14454.2866 11271.1588 11229.5385 11496.5814 9499.8279 6564.47 5552.6163 17594.0421 8701.196 39526.7985 14563.3107 12972.7963 6569.029 62416.2294 6548.4773 7689.6109 22493.9171 345012504 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 5063.0011 8363.677 13575.983 21549.3408 2199.9133 6852.346 6204.5399 6205.1385 80989.7469 8175.4136 13576.6723 6451.1976 11096.8381 11096.8381 4439.9558 29150.5602 7823.6856 8139.6464 10811.0753 4653.8652 5265.935 12468.4444 10194.3415 11957.5604 18386.9173 14423.9548 13217.3723 4880.3119 8586.1555 7949.0501 13967.9606 11651.3674 86359238 xyla Carbon Cycling Carbon degradation Hemicellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 5889.2388 5365.7727 5181.5043 3301.1807 4154.0683 2781.0906 98704.3367 9626.6439 5678.9024 16353.4498 16353.4498 7712.166 15853.6529 8725.3065 6130.2716 6112.013 4743.7486 4247.3234 4245.9831 13203.2274 5318.9716 16867.8942 10433.7774 10596.452 3617.0627 4129.5987 5565.5672 3280.2739 9180.5995 254821327 amyA Carbon Cycling Carbon degradation Starch Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 11426.7376 8774.4323 2840.2354 2570.0578 3457.9871 5770.7037 19365.2084 104833.7187 9290.5338 14186.1776 6037.1744 5745.8784 5745.8784 12689.9432 9786.0271 3299.6912 3340.8917 8049.9423 4975.2524 5632.7802 6406.5349 2737.2521 3698.5229 3671.2758 12615.3546 254442405 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9841.5196 10113.2099 23223.607 27477.7899 4105.8367 4448.8347 6732.2849 5459.4712 3540.7867 151312.3802 9270.5938 11127.6294 4930.1072 4683.4425 4683.4425 4238.8715 9023.5711 7625.4581 5828.1745 4446.7391 2984.2103 3587.6052 13317.111 3097.6029 14245.121 7640.8247 10821.6862 3943.3999 7221.2785 4740.2918 2906.9938 4539.5314 50724580 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus sapidus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 174328.626 327177880 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6279.5739 22665.7833 8668.4749 4056.9206 6193.395 6850.6929 6850.6929 8661.6101 4152.9889 5694.4434 15806.6505 12918.6973 4127.2622 4259.4405 46286.2576 359777820 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 132058.0899 4765628.9681 1713464.8699 5831.8114 12634.7709 3223.3704 9167.1502 5731.6195 6486.9246 11515.6516 22917.5879 167289.2716 56722.5692 11145.3991 7107.996 7508.6264 7508.6264 12725.583 25882.1057 17353.3332 17337.8957 28356.5006 13628.9075 15472.9255 24247.743 17623.4999 24462.8848 35785.0649 17827.6473 21500.8549 9113.5875 44310.8905 11830.5044 6143.7078 1884694.347 260887240 atza Organic Remediation Herbicides related compound NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 83835.5796 71332.0114 45505.9479 146796.0319 26206.4302 124914.5568 84949.7995 15434.6045 32822.557 42989.9219 45549.338 1511741.5567 42463.3535 36331.8139 45070.8902 23047.0159 23047.0159 28724.9462 52262.2813 43554.0304 89184.908 99060.3927 74764.0379 34432.3931 26013.8875 46549.6432 102748.4067 99336.572 37170.8156 44884.3245 41295.9804 44354.4604 91186.738 30113.2676 54560.2226 118575710 vgb Virulence Antibiotic resistance Degradation Cenarchaeum symbiosum A superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 45848.4959 13676.8088 38063.0586 26395.859 46558.5079 34005.4599 37690.8152 63986.6964 30505.9726 54476.7291 40367.8151 48067.2503 1207584.7371 35636.769 40760.4723 90998.2309 64720.4761 64720.4761 27659.0613 76580.5357 48439.203 121783.936 94044.4209 146917.2789 26932.979 51464.255 373992.1387 29730.9491 120038.9848 61985.0073 62667.3947 21758.6473 36941.1834 46719.7333 32774.5263 94261.0535 186475229 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10084.5664 44822.2417 19607.0554 6506.1188 17950.5448 7705.3224 27140.452 30569.4587 12522.2201 8698.4348 264593.8996 11180.291 12136.0125 11870.0759 7375.0229 7375.0229 10638.061 20101.7034 52964.9541 11089.8742 15892.3339 7153.3217 63351.3662 13764.0712 15429.1504 30119.5101 36576.508 22098.0717 16492.3014 34316.1708 11158.3296 22058.7638 15910.7188 34161.4789 296140176 linb Organic Remediation Pesticides related compound NA Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 7487.5262 3731.8681 3634.0454 4389.0924 2234.4189 2234.4189 3845.6481 8617.0335 7565.6057 3803.2232 8496.8237 4110.5636 2355.4814 2669.2232 14155.7686 6113.9051 11402.0633 1981.2959 5336.2794 4323.1869 4031.2426 5869.8479 291296468 cda Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 56316.3669 42271.4783 275837.6763 79383.626 6751.7164 235059.8809 25326.6461 29128.2815 37678.5714 209925.0698 34096.5158 442831.2155 27134.4634 230766.8123 67361.1227 44615.791 44615.791 42762.7494 65736.9199 33709.2565 53284.1871 41489.7418 90875.853 20627.1802 27519.7857 31638.1722 68893.8483 185181.5308 52383.0231 45891.0545 16645.1253 36424.0599 42371.3334 36189.9202 66871.2557 145613938 endochitinase Carbon Cycling Carbon degradation Chitin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 33437.2578 18918.7876 7769.0312 16262.046 5482.667 51620.0443 5340.01875 435130.3677 3769.75 110823.2016 5250.51385 3705.4979 5102.3644 3189.5427 3189.5427 4722.5053 12129.8304 15874.3216 143094.6288 8707.4405 5147.7296 5457.7394 10226.3292 4813.8206 12612.6817 9310.045 9593.0057 4390.9499 7598.9678 12216.0593 120589685 B_lactamase_A Virulence Antibiotic resistance Degradation Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 18612.0961 33190.0665 6033.3374 13774.1853 6266.3115 13823.9014 6585.0053 14056.3861 19184.6475 10302.9311 7178.4037 19420.5117 15682.6855 16972.791 14649.8416 14649.8416 21658.1942 109215.7722 23548.2129 658133.1766 21698.9726 93055.1626 18224.9165 13727.0711 20400.1994 8017.4206 56930.2345 19667.3561 44489.7541 17887.7968 12724.0173 17520.3776 11787.5393 28199.1497 328804230 terc Metal Homeostasis Tellurium Detoxification Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 8677.0533 6681.1524 5100.7192 7069.8979 8841.0753 11243.1302 5916.4208 5869.6244 6023.4588 16632.1962 168282.1658 10473.8824 14802.9397 6040.8868 5980.2401 5980.2401 4990.958 13176.516 14737.501 7152.5706 9815.2136 7440.5169 3940.5774 4042.4684 17750.1633 4184.79 23998.7604 17220.414 12311.8234 6670.1173 9056.0871 7474.7836 6969.8869 9984.8435 261857033 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4490.3495 11199.9888 3348.1034 3969.6589 4493.5514 5123.5386 6139.6945 2592.2097 94714.0927 4377.6633 5485.0714 17942.0886 3459.1745 3459.1745 3526.5567 9344.8219 6207.935 3894.894 5760.0925 4664.8404 2879.9088 2993.56 7079.8526 3376.5969 17286.8637 3851.8254 6756.3605 4718.0011 3506.3617 5032.3792 3463.8593 8332.804 110589320 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 4485.6079 6900.3132 4889.7585 3952.5838 2586.3382 5251.7413 6030.9531 3103.5672 122344.9128 4778.1055 8135.3893 2207.1758 2207.1758 3346.8853 10461.5843 7055.9414 10287.6335 8402.4931 10668.9047 2727.7495 2784.292 7635.1267 3210.7629 11423.9078 5257.7364 9275.9691 3107.0024 4603.6439 5347.4211 3746.0805 11194.4685 118151833 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 149947.9215 32609.1277 113335.0628 67398.6706 118130.5567 61134.9024 681837.413 89651.3632 120180.803 81772.3685 160391.0047 121927.3799 1653172.0764 214543.995 184339.0228 200559.3972 156015.7166 156015.7166 176052.7379 268791.1132 64902.5226 111291.496 107809.3582 217054.9569 84028.5695 64678.6082 96200.9337 130959.5165 223971.6069 140983.3723 125740.7923 72002.9186 78148.1325 89045.2715 60227.1339 140585.1816 242239624 phenol_oxidase Carbon Cycling Carbon degradation Lignin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 36980.3931 15799.0178 21824.3949 16084.9647 9113.188 5296.1531 21118.9612 10369.0639 582586.5071 109278.1363 55615.114 747250.2017 53534.4904 13750.7764 53419.9216 41505.2841 41505.2841 14095.434 50267.873 40914.5654 35868.74 66967.4011 276008.143 81827.6577 39093.8701 31123.3358 22453.5684 61571.7918 25610.4216 56135.1936 16209.1771 48051.9364 68247.5055 25630.3336 58600.5794 352082060 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 25297.6684 23377.0333 38256.3634 15639.1895 26918.3502 11533.2381 14355.4919 15959.9161 9882.4029 18757.537 31372.8274 15938.0403 595000.7633 25060.3823 62390.1772 61400.7413 17855.5795 17855.5795 16518.4991 37871.6775 17228.2372 84225.9707 20501.4864 28945.5683 13649.843 14688.5181 50511.1941 13370.0649 56502.271 31424.1891 30990.2641 13802.9045 22437.0027 26996.1555 12539.1784 244348.5419 339608544 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 8812.3397 12786.5386 5962.3416 3525.5664 8577.8006 2523.6782 2523.6782 489382.3565 5478.4284 11724.6594 9862.1756 6172.6046 4742.65 4335.2785 8163.9553 121554511 phtb Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 19062.2101 18658.17 10962.6977 20820.4248 34574.2248 5115.5387 8832.6923 17996.45 6654.6253 14332.9423 17694.8828 11809.6591 311861.9606 19278.9528 18983.8559 21143.4607 12750.9128 12750.9128 10572.2272 25591.7341 17870.713 18132.0498 31730.1001 20516.7845 8226.8222 10679.8304 23787.766 10874.9805 37839.2247 18854.2482 27084.4782 10305.2547 12492.917 12210.2849 9540.1925 25238.2095 145014131 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7076.0802 6740.3244 9713.1468 4104.397 2129.4683 3273.2539 12735.4163 9695.8549 93928.7756 7044.3383 7407.5144 4712.6186 4712.6186 3607.3211 10447.8815 6295.5933 5146.6089 10069.7879 11376.2961 6126.8915 7836.4736 14205.7095 5741.2164 12633.6686 6712.1095 9378.7697 3876.6299 8000.8262 11739.3984 5177.0296 6157.7636 340772520 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 6929.8937 9176.5214 10501.4985 3883.6211 5467.6709 2606.4811 3690.6956 5164.6919 9685.2868 3229.286 4853.2974 5583.1234 3135.823 9652.0513 5003.2277 17885.7689 2094.1011 2490.5711 2987.4081 6585.8575 4808.5151 284927642 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4119.7455 2680.5126 10865.147 2184.898 4127.8768 3816.4762 5257.0972 6217.5337 3210.9081 3210.9081 4909.0914 5776.2323 10862.8923 8308.5216 5887.1373 2219.266 9270.5893 4099.8878 45933.4766 222080983 ben_bcla virulence NA NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 80270.4498 7043.1393 10178.6344 6190.7627 3330.6336 10403.3043 8307.7063 5449.116 166447.6195 13166.911 11979.2013 3377.2314 3377.2314 8132.374 12927.1179 10456.8982 7697.8682 14186.1944 12655.095 4032.8451 3204.9849 13628.1402 4334.7372 16679.5326 11035.7456 13135.5178 5894.4608 7508.8523 5581.8027 7254.6495 17162.887 239802592 exaa(moxf) Organic Remediation Chlorinated solvents NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 26201.0822 4958.046 5009.8841 25249.1056 5019.3907 13896.8061 8391.6086 8344.0419 4384.8914 99448.7692 9197.6912 9098.4288 21950.1943 3179.7229 3179.7229 5550.4273 12869.6488 7714.8066 8235.9417 14037.3844 9537.846 6270.9652 5969.9616 8926.1792 8543.641 22375.274 10537.3976 12971.6299 4659.9526 8722.1217 5682.803 6863.0959 8621.7029 77383205 mdld Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 62566.3441 48341.8832 52136.8402 141263.1409 241769.7194 23756.2584 45910.3339 61026.0286 47912.3675 50101.7578 73732.9729 55359.7204 1298415.5038 72594.1186 62737.5409 115783.1628 49104.9179 49104.9179 43512.2832 62069.3791 51746.7506 56845.46 81525.0452 102817.5303 64513.2363 30723.0761 59953.1714 85960.8522 136131.2133 67978.8347 107476.1229 47846.4697 37735.4895 36068.3756 28717.7471 97845.3094 257069117 dmdA Sulfur DMSP degradation NA Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 7665.2902 11199.9222 7194.3084 4605.1849 3719.1564 66233.3944 71597.4783 8522.7084 3024.8395 3024.8395 10201.877 7075.8468 3498.1972 11999.823 6800.8342 3467.5168 4238.4178 12336.3677 10473.9088 87135366 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 9425.8802 10970.9927 40185.2703 6357.5551 19271.7432 87353.7461 10490.3434 8174.9781 7406.7997 6092.484 25808.5114 162123.6117 10488.7478 52030.3241 20942.8761 13036.2879 13036.2879 6631.6139 15502.7131 7314.5145 10156.3195 13820.6292 7916.0992 9558.7229 24066.6733 12742.3385 332823.1993 22851.8598 38115.4625 5085.6361 62454.5706 22281.4088 16970.9373 24452.9271 256560559 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 9878.8815 7136.31 10372.8741 223924.131 6694.6059 4434.3347 2772.4388 4702.7091 8740.7364 4433.6315 95224.7645 7429.1368 9422.8721 4474.9119 6980.3209 6980.3209 4762.775 9800.3754 5373.4789 7964.0056 17183.8916 7838.8848 4682.5482 6139.3069 8778.7946 3484.6015 18001.7189 7570.4491 10313.5741 3703.4992 5933.8 5260.7243 4629.9796 17846.9185 170605570 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 35591.3829 17690.6624 28185.3897 34189.3424 23386.2271 13919.0537 24374.875 27095.7927 18058.5288 29056.8943 54907.6851 24287.3637 628141.2334 40927.7437 34822.0149 40568.173 19773.6007 19773.6007 13516.4416 39162.4521 24173.6214 1448482.0954 38938.0281 59043.4626 16998.7245 19696.6191 51820.7723 14674.8893 58484.2524 33664.5133 40478.7845 16935.7513 18170.4553 22224.6963 16186.7602 38714.02 358637761 ppx Phosphorus Polyphosphate degradation NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8225.0844 117148.7851 17522.1474 13643.4718 22022.5089 7093.656 2369.9491 29177.6905 3721.2608 8076.7133 7401.8957 5303.3176 533165.6146 9029.8951 12944.6233 7632.7056 8265.9922 8265.9922 6949.5086 13448.1009 10174.5001 24502.7185 40127.718 9108.8327 4797.1745 7037.2924 18428.0383 3398.8763 61991.0604 12848.5683 20901.0361 10158.4808 13079.4595 10186.6104 5827.7311 13032.6145 288957109 napa Nitrogen Dissimilatory N reduction NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 62848.0731 6457.1251 11263.4459 4622.1381 8226.4954 3663.8221 12888.7902 7278.4852 5293.8587 125106.5129 5198.7128 7625.7999 6848.3396 3241.5579 3241.5579 12381.9212 11187.3894 5843.166 7962.7496 16116.0416 6970.3437 5284.7935 4130.9816 11408.2443 8796.1956 15150.73 11142.1284 13611.0486 5722.6679 6335.1093 6475.3484 7367.0196 43756.0875 348660398 amyA Carbon Cycling Carbon degradation Starch Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 10933.1017 32825.8194 2197.4659 2148.565 33560.2249 92250.3073 2083.8794 2083.8794 3454.9973 8606.4611 4434.6911 2704.4336 5432.5876 14355.5134 5101.8914 5103.9678 4185.1537 10527.6968 284029470 alginase Carbon Cycling Carbon degradation Alginate Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 118387.3022 15122.7314 37722.3681 52743.7152 14076.741 19684.1632 32013.3397 16690.4695 15707.6197 33886.9504 29375.9688 717108.4409 61757.2567 40492.0169 82147.5561 51803.5576 51803.5576 20259.9184 38997.0069 30794.3945 35369.547 56264.1464 31025.1934 18416.3679 40290.4346 44871.0489 23381.9083 66704.3775 124620.1001 43850.2543 18235.9124 26436.154 199882.6407 14151.4483 39632.1636 158138854 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 332297.1536 17780.0049 205783.1579 147708.9597 253904.8697 65551.6951 210380.3713 275587.4599 375505.6788 216416.401 206430.2331 213967.139 5473924.6027 224910.8682 801234.8798 712430.4676 314573.4902 314573.4902 145699.2944 321609.1557 239403.8942 302865.6697 660813.0652 337079.566 151117.7951 219013.7137 371415.5289 263796.3644 1035671.4622 281110.5611 333583.9503 144028.7789 197094.1765 316204.2317 156630.6713 325813.6765 223585846 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21786.2514 14648.6772 17052.6608 58365.3583 70872.8085 30306.1821 21855.2115 39464.7777 18339.9389 38174.2847 56062.6885 405149.4267 24390.8454 41118.7339 31716.9596 19403.469 19403.469 9868.6354 52228.8388 28366.4761 23402.8446 38530.5578 18457.2773 8251.5901 28063.6595 34553.2426 53839.8413 39597.1341 34731.764 43021.0641 17396.4455 15878.8109 29983.1609 67626.5415 16164.9928 225871735 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 25967.0288 10784.5339 13973.361 25816.6533 38572.1868 20909.1268 18991.2096 12265.2933 20395.4098 24397.7175 12087.2781 540271.7673 29643.0555 30788.8218 27559.7245 14595.156 14595.156 16845.7149 34423.7762 22757.4383 21739.3429 29205.0199 31782.1736 10165.1257 13951.6122 26933.7757 10213.549 39358.09 22083.2002 26320.5685 11446.4594 13885.5081 15958.142 8930.2269 36454.6048 344226201 nosz Nitrogen Denitrification NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 13428.8866 122609.6114 6014.0731 4100.1352 2701.0216 5331.25 9651.3259 3951.7109 90713.3912 5223.4234 7584.8598 7777.6025 7741.2152 7741.2152 3571.7389 11612.2458 4460.6212 5960.403 12276.4453 6429.4244 5253.7588 3695.3983 6846.0392 6851.9527 40251.5965 8387.6592 8898.3974 23214.6945 10878.6406 5298.1639 3548.2086 50665.6484 383294052 cysJ Sulfur Reduction NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 1024450.968 5843.4518 26069.8751 7747.9093 5809.8054 13158.046 25108.0348 9415.9888 75392.9187 13620.023 9896.6192 293314.1123 11762.2502 17897.5845 10766.6257 7387.3692 7387.3692 8508.5916 18773.5151 14771.6796 413135.9695 17508.3939 12588.6839 15076.0664 9387.2618 97091.6132 7458.7405 30856.0735 11989.3452 14649.4322 13263.6696 11719.4176 32332.8464 8925.7404 17282.9458 334115805 Sir Sulfur sulfite reduction NA Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 14605.7335 23563.106 20791.4282 10024.115 54625.336 4398.2373 6861.3508 9674.9374 5716.0732 8607.7622 12208.9741 6973.3576 347955.1675 14338.1656 16061.2154 14116.1454 9777.7476 9777.7476 5266.6945 17581.3737 13230.9726 15847.1128 8991.6255 12415.9028 5160.9887 7146.2943 16952.8442 21436.0403 9690.6067 17296.2474 6308.2625 11461.4867 18171.8365 10189.9213 14834.1646 73763008 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4787.7077 5655.97 4299.7658 5041.632 4443.808 2523.6963 6498.2471 13464.0571 4619.6917 2362.7257 2962.2836 6551.3007 3560.7559 5263.8765 1826.4801 2793.6404 2720.6604 291354134 urec Nitrogen Ammonification NA Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 13102.9192 10114.7213 17540.4216 18334.2018 4422.4337 5433.6281 4901.6033 9105.8333 8403.4984 11638.7588 179889.4878 9210.0274 8212.1835 10459.0325 38920.1629 38920.1629 10188.4342 14744.2047 9952.7104 7327.0327 10452.403 14147.0015 5609.1185 12368.23 15894.0249 9206.1769 18550.8062 15346.2206 22173.7063 6177.913 9350.358 5824.1515 5821.0185 8654.5654 297162044 rgl Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 29627.4807 19852.0734 2569.5548 62185.7158 4757.3793 2616.6948 2616.6948 7766.4063 27811.8864 6058.7853 6772.4247 4226.8101 5952.2314 3070.4845 145303444 cellobiase Carbon Cycling Carbon degradation Cellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7933.0383 60160.2116 142783.6153 2531.2231 2679.6659 14704.5786 30113.1269 7067.1501 4942.0553 175284.4317 3982.7514 4534.4137 4286.1148 2358.8264 2358.8264 4331.7834 9222.5135 3113.5109 6096.0593 18405.6001 4810.5321 11001.2678 6327.2258 20694.4483 3852.887 51717.8031 2528.8699 4209.9285 6558.703 44453.9456 5487.3349 357210390 amyA Carbon Cycling Carbon degradation Starch Methanosaeta harundinacea 6Ac superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta harundinacea; 166985.5138 9364.1691 3114.5996 4266.0206 201252.6135 3302.6107 4080.7416 3999.073 3318.2013 3318.2013 2772.6598 24242.833 3941.1586 4976.5037 9655.9031 2804.7102 4094.8343 7825.2099 2564.2616 15233.6165 45614.4138 2472.8706 6218.2803 4951.7238 3049.3911 29606364 urec Nitrogen Ammonification NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 7421.273 16509.0024 85938.1025 2547.2119 9322.1058 38143.3843 2864.0045 2864.0045 4229.3109 3433.1431 4541.6479 25606.9808 296426557 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 13920.5659 4852.8127 19237.8568 21421.4771 5340.4604 15916.9449 9232.2478 4634.9839 13062.0232 13151.6172 10610.7698 248342.5778 11556.1134 14747.3704 12472.3266 17335.0759 17335.0759 7217.7248 15206.5663 13225.858 17834.1349 21922.7194 22752.1059 6292.4871 6987.905 16968.8775 6459.1166 29479.6035 11898.3647 19210.0795 10713.9742 12626.0085 11978.771 7691.084 18295.7645 163731620 phn Organic Remediation Herbicides related compound NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 4798.999 4405.692 15101.932 6745.244 4575.7919 5118.7227 2826.3975 5587.0935 5282.0449 3908.1661 148521.2582 8813.747 7626.6286 9983.7523 5543.9763 5543.9763 3951.4506 12166.4512 12769.1161 8096.5073 4720.0499 7882.65 3526.0639 4837.5327 14217.9758 3831.5208 15894.6338 8940.8942 14248.461 4880.5384 5806.9111 7875.7407 3559.1318 8644.5877 385867014 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5088.7037 4387.2792 5126.7664 2477.2058 3000.9339 4625.1364 5752.5397 141109.3848 7047.7865 4078.897 2279.4254 2279.4254 3850.0169 9460.3372 7239.1015 5089.4832 7029.3856 7352.5891 3645.9224 3222.6853 9234.8386 3055.0788 14205.3872 8417.7079 8144.9306 3566.8126 4214.9255 3649.4031 2875.8611 10169.1505 56809407 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 23955.5887 82598.9045 16584.0486 30285.494 25618.0304 10563.284 371027.9004 23316.8546 15384.831 22206.7713 26907.3387 17805.6582 891991.757 27347.4028 70024.8419 14986.4544 10128.7646 10128.7646 37558.6579 49270.5485 33530.4241 36882.3328 31757.5214 84230.6185 15132.1539 28884.7792 31069.6875 16308.4554 61240.4809 33946.4847 92325.8774 19550.9295 23679.6213 23201.3049 17675.9156 32918.1858 365921717 amyA Carbon Cycling Carbon degradation Starch Cardiobacterium valvarum F0432 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 37867.0164 11593.482 22982.0285 23490.7211 23672.0343 16612.5982 25405.7397 27638.609 21966.4377 25729.3904 34169.8715 31583.4781 750318.7383 42756.6273 34622.9708 28945.7883 24990.4277 24990.4277 27424.8856 38041.1484 22943.4801 31439.305 34505.8825 35495.1641 17696.0574 57419.6816 30373.1079 71752.1637 68519.4272 22789.6828 92596.953 27479.1942 21123.8432 59959.1801 16168.5692 35590.9239 4157975 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 4123.0907 9319.5718 10468.0134 3492.8218 10000.8089 6730.3077 3435.8416 3478.5418 17123.9257 2127.8429 2127.8429 4698.1665 4821.9852 2797.7956 7757.8515 4813.7558 4195.112 4235.2091 336300288 linb Organic Remediation Pesticides related compound NA Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 29443.8337 12794.8928 24104.3284 8038.6313 47922.4444 14233.5236 10371.777 17207.0312 40930.4946 442890.9065 9935.4514 40390.9322 9379.4758 10168.037 10168.037 12256.7544 40013.2995 15059.2113 9342.3056 29289.551 11178.3311 11005.2625 14401.3806 26358.9451 39025.5426 20199.1908 16066.3875 16331.2028 8458.9162 32055.1357 13605.335 21332.8448 12601.7328 375079858 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11483.4717 12781.8011 33392.1008 12793.5261 3213.7692 4443.6378 20633.3111 5973.6093 6124.907 1023255.4857 6853.4396 6276.595 6225.0736 4506.1577 4506.1577 13000.3208 9558.8518 10168.4559 108493.2507 8533.9822 3164.596 4501.6262 34396.7168 8812.2909 16860.4424 7708.6895 11857.4873 2940.8816 5238.8095 5855.6428 11377.0761 17909.7017 169155080 ara Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 23926.0279 9375.7533 16515.4658 20853.8322 7438.7173 57240.1214 24464.1563 15968.0579 23095.1455 11892.8251 33247.8794 324074.0454 22593.0931 93101.3381 47107.1274 14948.9479 14948.9479 24332.3721 41294.1579 31524.0185 20645.5058 24700.34 31809.3731 14063.8631 14701.2604 80593.4703 16097.8566 45138.0382 31908.2383 24332.1526 23568.474 39939.5786 48901.1593 15122.8085 25291.102 315645899 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 119179.5943 94126.6999 91438.2174 68626.8538 18041.6059 35928.4248 14197.0094 7907.994 13476.2953 19487.7074 10798.9401 442714.556 22017.5473 26498.9769 31001.3969 21971.0351 21971.0351 9849.8398 40705.3014 19391.9672 13171.7168 17976.1117 24287.4714 15160.4058 10386.0172 34800.5739 11261.1133 166329.8064 32701.3021 30446.5255 13125.9289 17007.8206 8913.0246 8332.4994 18657.5775 337763556 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 5219.6641 5932.5993 13420.5941 11679.6323 17316.6659 5570.6017 62104.7221 5942.2994 17339.9773 70259.1226 7952.7137 6820.7732 7829.4269 7182.2764 7182.2764 3792.6239 13907.4599 4648.5802 7720.9147 8454.9565 5280.0897 9398.4125 23215.5704 6078.8427 10957.4458 11777.0693 15672.3887 11294.9899 6260.0788 15706.7198 3050.8491 4671.0999 94551840 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 14170.448 25634.9043 8856.0959 7279.3719 5706.6978 3760.6287 8459.3954 20074.2579 12339.8326 191224.2063 11178.2118 8471.5334 20800.5036 4841.6748 4841.6748 7417.5207 19686.7023 10389.3278 9425.8038 17591.3166 25950.5252 6517.8978 5845.9173 15885.4486 13465.7756 28031.5037 14302.4211 49270.8418 7418.8776 11288.469 10877.9607 7111.9682 16566.3954 13249535 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4347.8967 8336.8638 2417.5588 7000.4035 4053.1424 127476.308 351645340 ligninase Carbon Cycling Carbon degradation Lignin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 16954.6106 105724.3386 11667.4487 33884.5555 6197.8976 13728.2785 18962.7613 6642.3821 12328.9334 18735.4822 11639.6338 877233.6713 27923.7021 30908.7633 14732.2133 11663.9352 11663.9352 22887.5811 37187.1888 16509.8985 17015.2164 20910.2306 28945.8984 11829.9457 5145.0929 37934.2693 34028.2297 32182.2892 18452.2771 27572.9364 12522.6103 51793.2606 22863.6412 8658.2182 17996.1696 239802575 pgk Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 97972.2541 32121.7651 97310.6661 172687.1604 35082.8418 38775.1085 56933.8854 177561.3935 241265.7102 70305.4931 86600.3992 91566.6416 16836073.1716 115299.9553 100359.2933 178617.7971 172802.4889 172802.4889 73135.0754 138603.6105 80363.6472 338199.2785 208150.3341 318673.1086 76311.6728 103108.1746 171764.8898 99478.3515 331708.1595 161896.2121 160271.3743 70287.457 201206.7736 169558.9095 97710.3581 288417.7421 108758596 amyA Carbon Cycling Carbon degradation Starch Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 5111.3118 3505.3803 4427.6715 221194367 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 8861.7114 10591.0556 5153.685 3975.4477 2217.4888 8264.7448 5789.1337 2689.3389 161270.457 6933.9825 5342.759 4428.5005 2887.4841 11333.1107 8181.6689 6706.3387 5441.6928 8726.0525 3456.3464 3737.3945 8934.2934 4615.6341 15270.1641 6517.2369 8918.7007 3497.8261 5047.9881 4989.7189 3812.8253 9382.4866 118424365 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 30019.6069 76266.031 21595.7479 33548.0557 19287.2274 155455.7196 14047.8162 6909.8201 33156.2315 50231.5327 33196.0398 866529.9555 35673.5471 43102.5232 21533.2411 31029.9378 31029.9378 28986.5552 47505.3304 16667.1118 115430.8499 37233.339 34130.3548 12937.0417 22139.7237 38502.4992 28899.8492 59919.0952 32279.5139 23166.8627 8643.0059 35835.876 29796.9532 24442.7247 130894.5577 335424720 nosz Nitrogen Denitrification NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 13126.4905 10402.1368 11105.9509 6825.8709 3910.2808 82280.4024 4224.6361 9441.4463 11251.4071 5464.6452 116781.9043 10429.5629 7120.1446 5336.2221 2638.3362 2638.3362 6163.0429 14709.7819 11018.3626 11899.7068 10906.7427 6875.9916 5692.586 7443.7387 15986.0716 4877.6968 17677.5624 12813.6998 10536.2078 8945.266 8726.6756 7926.6885 6025.6971 14594.524 114739976 phytase Phosphorus Phytic acid hydrolysis NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 18191.9355 10068.7396 35240.6611 23676.3218 4357.7221 87941.4021 108518.8761 12576.9474 12306.8621 15035.5613 19265.1725 381478.6549 69093.5177 15198.2895 17989.6302 20911.0946 20911.0946 9061.7909 15739.4572 14525.335 22969.929 17671.5967 15349.5934 7919.2059 17051.4714 33423.0271 178816.4283 35518.301 24764.4396 30669.7861 8031.7888 9890.3216 14739.4628 59802.8349 18241.0671 325964580 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 8669.7398 2655.6546 3049.3302 3912.6254 849784.2513 5381.6486 3891.9516 2102.235 2102.235 6888.8554 4059.3741 2620.6049 6509.3473 3601.4126 6394.2454 115525806 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13292.4121 19349.8822 13012.8237 6495.2696 5642.5223 10092.7664 5787.8836 11196.4296 12700.5372 6873.2556 276184.6777 19667.8022 11508.5524 10772.4719 8565.8658 8565.8658 8740.6515 21967.6424 9974.221 22455.3799 15790.8441 20088.9901 17904.3103 8329.3478 10994.9993 5758.7201 20656.9769 8076.19 16057.7604 6527.9677 10905.1455 12845.037 6297.3168 32203.3732 407999808 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. avellanae str. ISPaVe013 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 69585.2932 74560.2703 98759.5417 36354.0349 80249.34 25124.6239 20887.0176 29590.5138 44998.2753 60373.6974 209497.8788 59727.4729 1990317.1382 153996.5469 48050.594 31386.0521 154646.8004 154646.8004 64341.6773 56329.3336 51193.733 32789.8748 69887.6824 225535.6502 20919.6051 76821.3825 32084.005 50283.603 118413.3746 50646.2463 45969.0349 34756.9689 69773.4034 47864.0118 42655.3355 84859.1831 333386353 cda Carbon Cycling Carbon degradation Starch Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 19537.3511 16097.1406 35867.4227 16906.9826 11769.5207 15146.7456 17387.5482 14361.9251 19202.0454 14000.2381 480740.3147 21201.5497 20932.5548 54557.6843 26837.2803 26837.2803 15015.9835 27793.0399 20037.4794 96738.7336 27121.5343 25349.7026 12951.086 17017.6208 22580.665 17937.5554 57767.6151 24067.7252 32184.7377 10713.9857 15136.2433 24451.9528 11287.1035 28303.9388 14289341 bend Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. 19070 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 58248.3575 52404.4775 28825.2853 31549.8802 21749.576 34144.2139 19736.9063 17112.1155 34379.6229 43209.8347 30270.9903 657956.7588 59926.5412 65328.9073 87477.4603 40214.6172 40214.6172 97839.4219 70862.2696 20126.1523 61429.3382 49054.2177 1792624.4247 34916.2426 26601.5737 99198.2195 63801.9541 190298.6232 81966.9087 219805.9516 27378.7893 143207.604 39889.9008 31654.5638 41942.7824 351593263 ppx Phosphorus Polyphosphate degradation NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 12497.9871 9533.3774 3710.3302 4314.7718 2970.5502 5789.0098 7331.4099 3281.0908 247277.733 10036.702 6796.4578 4350.291 4350.291 7132.5586 12239.5201 11005.9085 8592.5574 22261.1206 11627.2896 5059.1803 7299.6371 11251.7698 4520.2358 16747.8072 7270.2539 8949.1117 4203.6963 3995.7423 7610.1805 12669.4543 10984.8489 291176615 p450aro Organic Remediation Aromatics polycyclic aromatics Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 13755.7629 27323.7085 12128.7587 25812.6235 8412.7024 10692.8167 12299.8249 7253.062 6054.6989 131484.4105 5546.2834 55747.4606 5990.1491 11488.7368 11488.7368 15968.7485 13416.6297 11687.3534 28312.2376 23107.5583 27432.5145 13145.5866 8874.0253 29309.1669 12181.2395 29666.3297 15634.2693 18352.5928 6772.8448 7962.7361 8765.8841 13907.6864 10904.2881 29466090 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5385.0198 6434.6 76246.4911 18733.7233 2656.0759 11796.1782 4575.2996 5390.6134 5222.1629 213749.5678 9907.3911 8319.1284 16706.5874 11048.8967 11048.8967 2916.372 4673.2096 6656.8363 7487.3222 7892.547 6620.1558 18413.8241 6531.9364 17791.7073 18998.3434 15201.9235 5601.4323 7588.2358 7176.1637 374569510 mer Metal Homeostasis Mercury Detoxification Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 5374.2076 2841.3696 5285.4996 2834.7805 3833.0019 139478573 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 4747.3563 5314.8654 3387.4806 2536.7568 2536.7568 3674.8337 7056.5922 10174.2042 4975.3852 5432.4393 2053.7522 2807.2857 73538760 chnb Organic Remediation Other Hydrocarbons NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 5866.9065 4926.4812 6598.8283 4939.802 9412.0133 7361.6268 3634.632 5709.4414 9712.3944 4507.0598 160950.3603 5905.7364 3500.7617 2795.3163 2795.3163 5040.4116 11602.0938 8010.772 5880.3677 6795.0451 11502.1996 10327.4123 4869.7307 15796.6793 6197.4159 16096.7579 8102.2547 11333.0634 7284.2469 7283.603 6296.9993 3620.0238 9184.7301 151561977 cellobiase Carbon Cycling Carbon degradation Cellulose Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 9696.9569 8622.3185 2899.1422 3876.6558 5819.4895 168725.1612 4737.9886 7852.9569 7852.9569 13049.4823 4982.6432 5871.0089 6564.9825 2337.2212 362604.0557 8335.2577 6710.129 3320.2404 4685.7528 3468.015 7578.5325 226362872 cysJ Sulfur Reduction NA Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 17662.5621 25291.2556 12824.1575 7577.5454 6457.0237 4155.4655 5729.3434 18492.7489 3850.9266 879096.7268 8675.2576 6008.0965 9253.3842 4577.5553 4577.5553 5494.3447 14403.5935 7927.1671 8172.3585 8820.9807 7492.1295 4262.6143 10994.2674 11839.8522 5731.8824 16859.1472 10372.6591 14499.9609 4645.3327 6240.5073 5078.9084 8895.4914 15340.0797 332829871 ara Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 5269.7467 3495.5635 3887.3447 2867.4393 4469.9272 4301.3954 99028.3869 6579.742 4064.1831 7373.034 4585.5283 5532.8237 4365.3 25563.7346 12544.8907 2812.7549 5767.8799 10552.7111 7897.2433 6891.1289 14474.0672 4369.8353 3120.5806 3007.4597 7646.7051 379065528 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7686.126 11197.4396 2741.086 3967.8841 2463.9365 4372.6797 4033.9579 3327.6083 7199.3502 3495.6579 6795.203 137473.5923 5564.5063 11646.8388 4655.0055 4027.691 2127.5264 6543.1905 6463.3926 4645.2555 119959060 xyla Carbon Cycling Carbon degradation Hemicellulose Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 26934.8916 8436.2846 35497.8831 441701.8477 9394.1608 2675.4668 4644.0033 9956.838 18607.1127 136012.525 9011.7055 16435.1808 18630.9112 8589.5448 8589.5448 6421.773 22029.3464 40145.3434 10626.6489 16103.6949 11222.8563 25639.5079 27773.7623 14896.8023 13512.4404 30417.3573 9952.1078 16351.5143 7357.9887 10268.3783 17415.6658 10864.1372 28362.4124 6492287 amie Organic Remediation Aromatics Other aromatics Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4790.7881 9067.9743 4648.9227 3045.2471 5452.6245 9561.2722 80383.1496 37288.1545 3816.4864 3302.4351 6678.3332 6365.322 8774.0126 2777.3511 5092.5136 6779.2282 2660.1295 4380.5963 6765.3468 2832.4125 2923.0906 3430.286 5012.464 332039772 PRI Carbon Cycling Carbon fixation Calvin cycle Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 15695.8343 6838.902 1848.1244 2975.9527 4418.3212 5451.8601 4096.1508 5089.7201 67424.8603 6218.9166 3240.5742 4541.4569 3174.7281 3174.7281 3459.3483 16908.9381 6546.1594 4048.8867 6558.0232 4062.2048 8397.4812 2395.8085 7471.7482 22613.3054 12508.1179 6396.1511 7140.465 4172.7853 3667.0296 6314.6567 2043.1031 340841685 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 5162.4458 15378.9449 4497.6253 6394.5857 61226.5059 4959.8253 3758.9077 9729.1226 5235.6708 5235.6708 7232.003 10654.0558 7790.3525 2494.1419 8296.3728 8530.2247 2899.4678 3325.0355 227100384 xyla Carbon Cycling Carbon degradation Hemicellulose Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 29847.568 18046.7428 237093.849 32876.2759 6786.1966 10678.1943 51315.9424 18198.7924 22211.2934 52794.6614 15202.8966 520257.2873 15708.9769 24473.8684 13610.3418 28151.5453 28151.5453 16967.1233 52631.1172 15314.4349 19577.5038 30808.7514 16657.4979 15379.2511 15107.8847 30949.7205 49351.985 74164.1213 31469.5582 36917.8163 8049.9053 16452.1442 18787.3756 113354.4497 28751.8745 291369285 phenol_oxidase Carbon Cycling Carbon degradation Lignin Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 12688.4482 6877.797 19058.4707 6556.6566 4904.9992 21267.9848 20159.3263 29983.5752 566317.0664 25186.1695 6918.4922 16396.0798 4953.6014 4953.6014 3859.5762 77126.1407 7405.0178 57160.6918 23634.3199 37853.6003 10184.2624 20297.5982 12105.0039 33573.2398 33097.598 21834.3587 21322.7362 4643.0534 22872.3895 18125.023 8674.6072 8176.4727 301638743 mer Metal Homeostasis Mercury Detoxification Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 77269.4995 20239.8049 44845.6564 72020.3026 75077.1503 30416.7443 60985.6531 67118.3601 31088.3586 51692.8682 77029.2249 36166.6113 1463032.7368 101481.4597 87559.9374 80951.28 42922.7109 42922.7109 40250.5277 74014.5781 61351.9715 99002.8098 69897.5632 88507.304 34585.6172 30263.6234 70812.5756 27752.3764 118718.3774 25188.8126 65363.0342 30564.8803 42517.5363 44387.0064 30954.1529 103567.4163 288888471 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 6403.5275 5757.0421 6976.2597 35511.6453 13429.2094 4991.3045 6794.3624 8801.9453 10243.0532 12734.2587 6659.7232 259305.1991 12211.8618 14365.2244 16600.6067 10493.3213 10493.3213 6111.4472 16984.925 14617.8886 8486.4297 15627.6822 12141.7728 5149.5477 11584.3305 22186.7669 5230.2679 23193.5708 18360.0926 17937.8688 6342.3268 15864.6146 9968.867 4034.1348 10890.1216 219795624 pec_Cdeg Carbon Cycling Carbon degradation Pectin Colletotrichum gloeosporioides superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 3731.6382 4814.4151 10395.8357 3607.8368 2874.121 2269.9637 2269.9637 5055.0679 11112.5586 4075.2487 3928.8186 5443.8081 8553.9442 3149.9727 2742.0494 16357.2494 3554.5812 5673.3951 163261665 tktA Carbon Cycling Carbon fixation Calvin cycle Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 20057.5562 8300.7007 22250.481 3951.1416 6252.2466 4454.8474 102533.1402 6807.9935 3760.7501 297871.4436 297871.4436 3611.2284 9331.2678 7956.4499 12254.6451 11393.2019 7028.257 3372.4812 8994.8944 6216.3408 4620.8467 13082.0567 8480.0002 13985.0574 3217.452 6928.4858 7490.1369 65084.9269 8141.3585 118442823 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4790.3362 97231.1443 7539.4471 7289.6687 3446.5408 12961.4656 6084.9072 635903.871 12054.7804 4971.2881 4971.2881 8507.4445 5134.8264 10398.965 5386.3272 3831.9403 2658.6668 2322.4168 11063.0763 7416.5303 5650.3911 2972.5616 3895.9527 10616.2076 2930.6225 4477.6148 386867105 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. animalis ATCC 25527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 4528.2914 6932.5557 5535.2748 3039.0079 2896.1517 2053.9754 3486.5879 4519.0324 3323.622 145062.0827 5037.7582 5317.9349 2289.3892 2289.3892 4539.6769 9265.0334 4947.5482 7670.0935 10391.1265 6431.5118 2945.4014 7815.5684 3884.5391 11001.6968 1992.5063 3266.0037 13483.8882 2276.1362 7994.2041 228565769 aps_apra Sulfur adenylylsulfate reductase NA Leptotrichia buccalis DSM 1135 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteria;order:Fusobacteriales;family:Fusobacteriaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 5849.9684 11344.5581 13759.4875 8222.8583 6095.844 9025.178 10047.7275 4418.2663 225826.7208 9386.2398 10396.0377 6703.126 3623.1402 3623.1402 8561.9133 12664.3201 10943.0718 18466.9714 10182.3154 9778.4777 4548.9568 5271.3774 16553.9676 4974.7109 20532.3403 14104.7202 13699.9177 7288.9506 7172.325 6669.4329 6229.9543 16955.7956 407058892 nosz Nitrogen Denitrification NA Oceaniovalibus guishaninsula JLT2003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceaniovalibus;species:Oceaniovalibus guishaninsula; 52456.9165 12103.479 8155.3258 11458.9954 14583.4571 10777.4593 9988.9815 50227.2076 22466.0908 196469.2273 29191.8353 22873.7821 16150.4618 15508.5003 15508.5003 21149.074 35600.7298 19411.0883 25702.4807 62496.6023 61463.2457 16044.9452 24680.6516 37421.2621 16741.524 86313.283 24297.6949 29440.886 28462.5242 12558.3608 17912.1351 77421.8635 62755.3722 300710074 dehh109 Organic Remediation Chlorinated solvents NA Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 16044.0714 18121.5703 2191.9895 6669.601 21991.3358 7255.5002 7058.6388 95842.9163 6374.4197 10632.0408 8539.011 8539.011 5061.6654 13174.6954 7347.1864 10572.2728 4121.988 4309.2843 7802.5541 9199.9184 3511.8401 52110.78 9974.4035 9449.1832 3667.9812 3870.6595 11346.8473 3288.2595 31228.1944 319779915 linb Organic Remediation Pesticides related compound NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 13781.6438 86798.884 2833.275 6774.0903 16111.5142 6652.66 8421.3991 9430.8224 12534.8442 11799.7473 8245.5344 23356.666 24239.6754 24239.6754 5678.0544 19348.6604 6664.4695 13455.9101 17364.8631 9216.9742 7638.2561 10383.5086 16707.737 6421.2898 27344.0918 24755.1593 14932.7031 9695.3914 9989.616 9133.8589 10296.2433 9783.6226 357025507 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 10477.2272 7602.0157 7371.5852 25641.8529 4021.1888 10355.5453 3074.5609 8623.1219 10569.8488 12857.8388 84782.454 7759.5621 7352.7779 7168.1938 6975.0123 6975.0123 5345.7373 14524.9814 9975.7523 6068.125 27110.604 18293.9833 9013.6194 9440.499 10754.7106 25264.0989 29256.0005 13262.7937 13061.9536 4479.4526 10072.0462 10959.4156 27120.7431 8434.836 226363144 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 27293.7433 16101.4606 11394.7802 10091.6523 11317.0122 7137.7074 10177.2546 25969.9782 6302.7763 19552.7917 38606.7494 17725.6945 411736.4329 30704.9095 243326.129 32152.0377 12832.3472 12832.3472 15328.1071 63098.3345 22975.8055 24374.6668 97095.5386 22140.298 23189.9384 14894.8094 29788.6727 40699.2636 70127.734 25011.5296 42938.8837 13819.6698 26627.4518 23099.2673 13353.8641 17526.7149 333992554 terc Metal Homeostasis Tellurium Detoxification Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6913.8335 6785.2668 37941.873 3634.5573 5846.3956 2663.1411 10826.2994 12651.4659 6297.9472 98389.345 6977.0303 6381.7411 6716.2492 5866.5186 5866.5186 5737.7322 13389.1427 8883.2695 14523.6004 6737.6411 6472.112 4364.7106 7476.8004 14516.6798 4709.8635 19531.6305 12672.7657 28772.3966 7112.4661 9212.6787 4872.8746 5752.7216 325961954 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 6511.766 70475.1867 3186.5665 3726.0928 3856.399 18222.4798 10813.7442 7827.7788 57553.9423 5744.1232 7801.5306 4524.3318 10783.0524 10783.0524 8515.4193 14978.4323 8025.4637 6188.2686 38444.2166 148686.0529 3510.5864 12819.2199 16271.1289 7299.4549 35236.7135 8740.5994 13668.9153 2006.3667 8489.8473 13425.079 3400.5766 5811.3942 333028767 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7168.3482 5756.0564 4960.8082 8222.9299 12294.7921 5209.9606 7981.015 2438.444 9458.4304 8902.0066 68998.5417 59183.1336 6650.5306 6769.8037 6306.2015 29848.7582 29848.7582 4839.3911 17912.0479 5008.8472 9258.7405 18371.2294 5332.4147 6150.1857 6085.3699 9685.3466 9779.3617 21111.5371 11791.813 20409.9277 4021.4791 7230.298 11327.4151 15899.2776 8855.0068 328883435 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 6270.0867 7711.7993 6144.4206 2944.969 5686.8369 71805.1346 4749.6022 3809.9703 11143.2064 5554.6478 9534.3508 3459.0722 3314.2323 62980.111 7192.2716 254475804 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 14633.2837 21569.1321 12185.4737 8147.9553 6205.995 3118.7537 30332.4099 3873.0467 20425.3682 13720.3656 27504.5201 633598.3007 22591.4665 21786.4188 13534.4803 11653.618 11653.618 12499.373 19710.5347 226273.287 11023.0588 35988.4164 53996.5956 9689.4213 21898.3684 17074.4911 8723.5536 37118.764 13844.5205 15103.6476 29621.4318 10108.4062 15643.7307 6102.2165 13484.7982 226942607 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 52319.423 19676.7119 845557.717 8207.7374 5280.7309 6196.1509 3865.6574 20099.963 49500.6696 19725.1871 122336.7505 10496.8093 13126.9007 30947.2983 19505.4747 19505.4747 8454.9992 25081.5494 18080.0357 41250.4054 25372.7511 113647.1815 13926.4256 17983.8051 10716.512 6958.1224 175459.4516 73156.6285 103679.9553 7972.8289 9312.6518 12994.3683 7310.4627 87888.2494 154351065 mdld Organic Remediation Aromatics Other aromatics Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 5310.2403 5944.2436 4188.993 2169.2729 4271.318 9660.5235 2280.1496 152226.0567 6768.7015 9291.3481 2168.7476 2168.7476 5959.4884 10709.9879 8790.0292 8804.0949 10551.0019 5457.8727 3011.178 15459.4487 10790.3178 5801.8454 14720.4086 17403.738 14484.7924 6254.9751 5050.7925 6246.1552 5897.6195 7347.2223 298549761 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 18818.2179 4981.1976 6132.2255 5767.1539 10573.3957 10563.4928 11842.4365 322310.768 12950.7807 12472.1769 28619.7353 4431.9751 4431.9751 29479.6336 7049.6025 18833.9936 11839.697 7521.0601 20940.3964 14104.3306 14869.3636 21468.8146 20521.6421 12512.5342 7644.9586 5882.968 11983.2591 9051.6665 5335.1242 83846202 pgk Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 37132.6833 12286.5553 8730.112 9882.4821 19192.5259 9862.8872 10617.6893 7721.9366 13359.4896 12699.4595 61560.8755 258741.1694 20480.8665 13688.7693 9495.5348 7286.7392 7286.7392 12861.8965 20283.4608 14956.8733 14847.7788 17875.3587 27870.8661 10236.1165 6060.5844 20437.3112 6353.3891 26898.532 12550.2201 17844.877 8010.3521 8858.8177 10160.5298 10125.0506 19473.4863 350564582 fccab Sulfur Sulfide Oxidation NA Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 7831.8085 9170.2328 20930.7979 5578.0765 7123.6781 6145.0165 9890.4619 8891.3754 6239.2545 270881.7176 9305.9318 8977.0725 6089.8253 4310.0052 4310.0052 6182.0335 15221.5195 8981.9876 10358.5914 9924.1884 10878.6947 3605.1855 4498.9398 13160.4323 5346.4222 16783.4542 9453.0578 12230.9551 4398.0831 6732.0285 8175.257 6193.5983 13685.6496 371776970 ara Carbon Cycling Carbon degradation Hemicellulose Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 5762.2783 5710.9042 3704.83 3663.3002 5067.5504 9571.2583 71210.49 8789.2096 4624.7853 8438.9284 6397.5084 3944.7062 7294.9772 6511.4131 3288.8123 2570.3434 5017.5819 8144.3549 9830.6221 2329.4273 4049.2407 3436.0905 2802.6937 8977.1578 115421706 ophc Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6902.8295 26658.3148 12157.8421 3256.0552 5695.1577 4151.4116 9820.604 6201.3555 2997.353 57621.3585 3705.9553 6373.0324 7043.1153 3588.9401 3588.9401 6442.6671 12172.7792 6571.9237 9041.1006 6272.0195 6001.8628 5836.5959 3934.8645 6892.4182 5581.0552 9488.9118 4620.4522 7031.0927 2852.5962 6924.869 6352.8993 3978.2179 5354.4353 119698615 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1094474.902 10644.3491 20000.8415 56624.985 17451.18 22163.3912 11522.9543 9565.7671 13680.3726 27270.1764 9165.3755 409249.4954 16311.2945 17333.7396 15571.0968 9486.137 9486.137 10178.8446 28948.1498 21103.035 18715.0521 89701.501 27305.4835 28310.7884 9256.3751 29049.2418 15022.8121 40525.3101 24613.0089 27119.4521 10856.7026 12878.8317 9898.9412 8150.6646 28224.4721 119670557 xylj Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6801.7558 4864.4422 48136.0164 4621.6527 5428.2523 2138.6239 4309.879 9935.2163 5251.8336 152730.4928 5130.4742 5217.3648 1866.4257 1866.4257 3828.9429 7443.9335 7793.6392 6296.5514 8200.9159 7529.8064 4056.371 3342.7293 9065.5716 5518.1074 13315.9464 11061.7317 9803.3885 5298.7501 4557.5387 5712.0763 3694.5479 7926.6607 312602251 ben_bcla virulence NA NA Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 24640.3965 11482.8559 45214.0871 6255.3771 11144.1394 6990.7453 8300.8927 8065.5051 8866.0453 6244.6239 226973.3963 18203.2745 16946.562 11017.7164 9388.0905 9388.0905 7370.4223 22801.0894 13950.991 9158.8516 25756.9771 9821.95 7788.0689 9087.9868 13497.1231 7568.1641 29060.7666 17916.8905 14585.0384 6495.6001 15315.1153 24970.2413 7619.6931 31000.9058 186473211 amyA Carbon Cycling Carbon degradation Starch Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5806.9631 4043.1046 4815.8301 4870.4528 2953.4203 3302.598 12802.8487 2705.0154 7388.4443 4073.3586 3745.5699 2842.5184 4121.3791 3240.1978 15664.8873 4890.9279 7362.4883 3534.2091 4471.038 5076.4427 2022.3367 160866551 dmsa Organic Remediation Others NA Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 4643.012 4497.4179 7718.721 4028.8907 4129.9631 2145.9679 2145.9679 6268.3138 14686.7726 5566.89 3166.0929 2463.8884 5077.2359 2228.7388 72363.1494 4408.6272 217503544 urec Nitrogen Ammonification NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 17489.8069 66198.3665 6573.4343 11012.7572 2393.9308 39032.6662 8449.0285 6348.7829 5903.5572 76963.6001 8717.3673 7408.312 12711.2373 9886.5813 9886.5813 3313.2709 3947.6248 6598.7373 3811.6002 3576.6611 3311.1497 10003.2652 31909.3337 16757.2689 22743.1453 5295.9401 13133.933 6829.3956 4177.6731 3557.281 8453.4954 209487002 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10670.8292 6093.2343 7199.6541 9244.826 9659.8802 7539.7689 11330.7838 6509.5185 7682.5191 9043.4908 190235.0818 12179.6178 7833.8349 5683.1944 3461.923 3461.923 9226.0157 15295.2012 7986.0028 9344.7633 13212.9685 15325.2737 5678.7021 7089.4238 15364.1087 6163.8093 26367.7209 5445.2313 14281.7872 4883.288 8148.062 9745.2481 4498.4008 14420.1037 307727440 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 31992.4842 14129.3568 33858.3675 40418.451 12721.1758 22214.8403 19243.775 15362.7721 29929.6278 74533.3899 70735.0987 661981.7556 87710.0821 51888.5158 57792.733 29099.415 29099.415 28390.9072 42892.9191 33270.7531 33167.7862 72404.4565 30492.95 22746.0522 35344.8521 47830.6781 27735.6476 69623.1599 36231.3426 59869.5436 15255.4911 156710.2799 41650.5641 44129.0316 24392.3341 27382949 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 9526.67665 14149.6072 6517.0754 7811.4594 7486.7681 11603.4782 13727.18315 8593.73425 245051.5999 10593.32365 35636.2299 15171.5609 8935.01315 8935.01315 6325.33335 24319.0584 8195.52145 9339.93515 11952.1211 29290.1956 17081.1907 8840.90165 10287.97525 21857.9653 16176.80975 11391.16175 18230.0337 9977.94065 11597.69755 7071.9326 11974.52905 76667604 nirs Nitrogen Denitrification NA Hydrogenobacter thermophilus superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter; 38552.8522 9205.5137 9180.3583 3636.9621 7410.4724 6676.6355 4640.9321 4856.0247 21727.2409 17436.4524 3068.5835 2822.6967 7421.8917 154657 rubisco Carbon Cycling Carbon fixation Calvin cycle superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8595.6641 18555.1222 4935.3101 6193.6755 2971.532 7679.682 8837.2768 62110.0489 3729.523 6992.7905 5726.6196 2281.4536 2281.4536 11351.132 6704.0793 4618.3405 4362.8448 6545.6207 6407.756 4596.0538 11773.1558 6328.4191 15831.8273 5715.4384 5152.4322 3844.3293 10061.488 6417.8783 9450.8614 7439.3836 88702603 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 8807.9577 6982.6726 27406.9214 3862.7899 4010.277 4232.9097 4981.4971 2747.6679 146716.8672 6593.865 7798.4991 2522.2339 2522.2339 3749.9542 9735.6186 5784.7738 6157.1818 8554.9004 3906.7297 2329.0594 8583.2227 2526.2596 10560.3318 4362.9349 7788.1037 3226.2779 3397.0917 4614.2953 3417.191 7849.3516 46519937 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16610.4874 14651.3047 50072.0538 25169.0438 12458.9677 45078.9293 9121.2381 15726.4604 17450.3508 10948.5984 375675.693 20748.9408 16810.5383 11317.3689 9869.0791 9869.0791 10311.7586 28289.2777 13345.7891 15817.208 22734.093 25508.8642 8370.9496 31391.1965 19374.7557 8306.5264 34905.0069 13211.5809 67003.5301 9721.4356 35194.7351 20620.8228 9198.9716 25463.2157 240102881 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 58087.9065 12590.0332 15693.0345 34406.4463 381330.3557 31622.7278 46978.08 76494.8751 23638.0817 58115.0943 34772.3459 708723.9935 37212.7453 38466.0075 25567.2401 27528.3464 27528.3464 39885.7779 53629.288 29676.8532 38599.6231 59059.5584 37363.101 19321.6767 23679.8412 56047.8907 36083.3264 283418.1314 63191.9029 80356.1614 31144.07 21656.3756 42579.2673 194059.2805 46483.3384 308273491 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured Desulfobacterium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 4281.5214 66309.9489 3527.6934 3527.6934 291197232 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 21054.4247 10093.9028 7477.6196 13385.3726 5710.1911 8568.8534 12520.3818 5650.0327 9784.3636 10719.8492 25738.228 229799.6224 9474.078 19559.0162 6672.2879 8998.5179 8998.5179 9932.9392 17247.6684 14272.3625 11100.9288 20502.8627 11382.0232 7406.0137 6748.3965 16930.1651 5430.2547 76403.7279 29610.137 18394.4094 5416.075 9655.7127 12141.5809 7936.8236 51913.4059 336296520 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 10017.5491 6510.6522 4379.1416 8724.3964 5003.3099 6694.8954 5068.9947 14852.48 16627.692 4818.4656 202159.4605 8943.6687 13390.2926 10929.1094 5023.672 5023.672 5111.619 14693.8922 19979.9669 7863.1058 57387.9422 8251.4596 2915.2225 8216.4589 12333.5757 4305.2168 15902.1704 8678.1943 16601.586 3502.7065 8038.2476 8329.3721 4325.8466 12721.6216 345302878 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 14946.5519 29875.3636 8231.4683 8609.4999 5403.7379 6417.6093 8875.8084 6860.1987 63581.6313 9784.2086 39889.1362 9776.3716 27053.2817 27053.2817 3819.2325 10231.9859 8357.118 5286.9011 20114.4272 5616.8858 7468.5265 14582.7006 6298.8726 11333.5362 65632.4601 30752.9666 7694.4929 13378.506 6659.7816 6891.321 116804518 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 10543.0509 32072.2082 6246.1644 8651.8861 6017.1427 13332.2712 8356.5698 81569.5083 7493.0028 7487.7861 22007.424 22007.424 2857.7501 9734.1507 6605.3946 11691.9828 15736.7936 7569.8446 10727.1112 10310.7258 6374.5256 27166.6706 17150.922 4977.266 5962.8892 4640.3592 10150.0773 6568.7874 2463.3738 5965.7323 288346373 cellobiase Carbon Cycling Carbon degradation Cellulose Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 12842.5017 12207.4464 9511.4701 37852.2912 14766.8639 5581.402 10487.5739 18536.8017 92762.5466 12927.2179 11211.0566 31370.4686 9265.3488 9265.3488 58427.3069 15562.973 8498.6724 3862.5147 25464.8852 7147.3016 17938.4225 11991.9453 15789.9244 31890.3974 16013.7184 50776.6469 9337.3459 8640.4489 10616.2815 5668.497 17282.2509 352682303 adhC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 18732.2065 26966.9456 9383.8883 50880.8617 4677.5138 18647.9263 15013.9567 44443.1025 41641.671 13351.378 15441.3436 226438.3242 10115.4536 7746.7427 44343.2172 12364.1481 12364.1481 6035.4002 28949.0224 17619.894 54551.7749 37958.0977 32701.3915 18324.9226 29857.1365 18105.7341 25587.5838 227361.8088 27048.0867 27843.5908 12394.5469 39275.9835 31999.2216 15786.0675 17120.4869 365866368 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 28194.6002 29155.1801 7712.0122 12744.7236 14855.7573 13461.1797 8476.9482 18577.1616 23876.8768 16176.9771 491150.0483 16238.9112 22041.9583 13119.906 29088.4835 29088.4835 25834.3654 22574.1833 12300.2814 10605.3815 19392.7542 11784.9104 8639.1733 8837.4438 13198.3707 7099.4271 36471.1357 13145.7646 18343.2947 8692.8653 19065.476 14729.2166 9342.7775 16628.9577 292597953 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 9719.5829 10664.6536 7799.7653 10766.5406 4174.891 76422.6708 10023.4195 9181.7868 8648.5333 7555.3539 145035.0737 13561.049 10901.4122 19147.8539 10273.9676 10273.9676 12178.3232 23610.3144 9703.1937 10711.7424 24095.4222 12368.4669 8561.3751 11559.2754 21516.7032 6500.8152 20635.1749 13332.7984 17021.3487 5729.2869 13019.637 13220.3275 5655.5093 15288.664 219541152 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 80080.2774 7947.9521 8884.6968 12553.6565 9264.2529 5957.1534 5621.8249 7528.0067 11043.6738 19085.3078 146675.998 11407.4989 12064.3607 15644.2037 23803.2444 23803.2444 9519.4917 307245.5929 75780.4513 9638.85 27710.7254 11852.8487 5867.0497 13850.7436 18899.1923 5796.9718 26149.3411 30460.5574 558856.3464 76672.13 9448.361 75104.7436 6869.8139 31964.338 398846408 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM84 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 25278.9461 16225.8526 6676.8987 12791.2104 9110.7628 3887.056 7135.2346 50928.1449 7738.0592 390431.0696 11314.7046 13429.4844 19384.7468 13286.5491 13286.5491 9468.6635 17362.1661 19566.0623 8591.6049 10145.7081 7704.8042 7803.8012 34668.03 19004.0846 4093.9569 26126.8236 12396.1167 27803.0582 6723.2263 11224.8951 36696.8467 7517.0426 11758.5978 345873282 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 25597.0801 6785.9657 8101.1073 19040.3301 12617.5159 9444.2721 9738.1172 11794.1306 19920.136 20646.0451 11655.704 354189.9606 11914.577 31852.401 14728.387 13959.244 13959.244 6500.1909 27943.3492 12775.11 23704.4685 23996.5709 55636.2782 17260.6751 22183.1169 18239.8421 10977.3012 51766.4677 27436.574 26401.255 8722.9729 13606.7943 13223.9788 8096.1488 49590.8832 57160024 endochitinase Carbon Cycling Carbon degradation Chitin Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 8587.4626 269543.5743 7163.5869 6945.1758 4344.9164 6491.0365 20811.3313 7884.3602 201694.8658 41829.6853 8638.756 5731.0225 3421.581 3421.581 9620.3273 58479.4505 10552.501 9141.2949 11485.046 9105.417 4778.8209 5652.9553 21650.8763 8230.3034 25189.1157 6960.0264 12022.6857 12486.6769 11995.1738 7996.365 8479.5574 5966.2771 357412134 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 7144.8317 7550.7685 13154.9363 7133.4744 2945.1966 8930.2099 6412.4437 142692.3626 4704.792 5382.1214 11673.0551 4979.4393 4979.4393 6684.9383 3767.6464 3115.4717 8512.1012 3314.9504 8674.2859 6385.5134 6884.0168 2914.0241 5171.3382 379708143 amyA Carbon Cycling Carbon degradation Starch Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 100220.6332 14014.5894 46591.441 62518.8905 16935.983 113747.7197 39516.5331 23095.7889 13260.7019 30929.6265 51529.0382 835042.6477 23390.44 29083.89 43366.508 34034.8598 34034.8598 19489.7617 26925.7389 15724.1604 80816.859 315531.8173 46162.2775 43961.1197 21677.1713 34074.5834 14221.3272 379623.3376 34062.8008 26076.7622 49558.7219 35987.8201 28986.6248 34040.6965 19509.8083 270505664 cda Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 32907.2609 17732.825 9611.4902 10815.4932 19466.6346 7256.9686 4806.221 72486.6364 6126.8826 6363.2857 8067.4488 15836.6857 223388.2865 27060.0915 19350.4401 25424.6716 15447.5292 15447.5292 4025.5932 24311.0749 9667.6272 10221.8699 10860.4239 20580.0266 6035.6527 6788.0486 15856.7234 12820.1574 23608.3915 21446.3206 18488.89 7058.8748 8501.9908 14087.1466 4287.7704 9158.2746 291005410 xylc Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 232645.1011 29974.8364 1260147.4209 57290.8654 204155.5834 103336.9562 102623.7985 296187.2579 137446.6676 127040.0667 105429.2967 3579037.2769 105067.7647 272874.6643 130869.5293 124905.897 124905.897 109307.0688 114110.4216 62822.3357 118630.9052 256344.9156 210204.4072 132449.6055 76535.7633 87691.6101 70651.7732 297195.5672 131779.6457 106772.026 73903.7308 115547.5008 146708.315 119493.3254 654432.6621 381386512 xyla Carbon Cycling Carbon degradation Hemicellulose Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 5379.8203 2342.4805 24798.3307 4183.1595 7044.7216 7044.7216 6281.9721 6567.2322 2220.8433 8345.9234 7167.1922 4518.8999 3135.3111 390576292 bend Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 12191.589 4863.0156 3749.62 3974.6476 8593.8143 33378.2004 4957.3774 137140.8426 12112.6376 4200.2905 7314.5143 7314.5143 4949.4552 11384.4917 4049.8099 7483.0928 6046.435 5273.7541 2762.9804 11059.4514 10728.2653 7594.5991 15399.8241 8431.3477 14098.4672 3215.5114 7020.47 12393.7015 2097.9426 30452.5515 260219042 xyla Carbon Cycling Carbon degradation Hemicellulose Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 5016.1217 17202.2925 2017.4674 3197.4568 2505.6497 6011.5753 4226.611 8391.4048 69173.2237 5145.7741 4062.8805 3238.4403 3238.4403 6087.8798 3403.9292 2351.076 2485.2115 10038.2319 8134.1412 6051.2675 5997.0123 2001.8347 3958.3058 7864.2937 2507.2472 8486.2115 82717665 terc Metal Homeostasis Tellurium Detoxification Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 11249.6355 13903.8978 18100.8591 14144.0941 12794.8529 9004.9668 7551.3594 8627.432 15064.0482 16864.8129 7183.4503 274001.2823 14734.3413 17218.7586 11365.4309 8699.7218 8699.7218 10442.9239 23807.7165 14542.6514 20099.7173 32255.9072 29902.5348 12854.0672 4475.6911 22038.8733 8727.1942 34664.3213 9835.4964 19457.3743 7458.5629 11076.4058 16839.3269 7264.0172 28643.0011 78169469 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 21767.3608 49942.2758 8019.566 14774.6093 20459.4911 9893.5536 6247.8144 11824.8971 20742.7437 14704.1343 487275.0448 13872.7636 28510.2934 15671.2281 9482.0196 9482.0196 163143.5092 18607.5697 16403.1317 11762.1911 13870.5631 20727.4578 8024.5563 11014.4976 15950.0521 7520.724 31184.5291 9679.7147 20720.7434 8803.3029 7480.6927 16157.1493 11216.2078 21755.1798 218324840 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6203.3334 4660.2906 10195.9206 13542.3687 16576.1375 13250.3477 5093.7268 4520.8024 175682.1619 3617.0631 8201.526 16842.7773 3454.6424 3454.6424 3831.4244 9411.0559 33598.123 3849.0335 8954.9746 3471.2763 6399.2813 10854.8484 23536.5107 20810.0621 5143.5315 9162.0555 6564.19 13593.2463 6682.8941 229380270 ppx Phosphorus Polyphosphate degradation NA Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 16790.4577 8508.8851 14142.1197 5117.0512 14050.4587 8610.2824 5924.944 10829.9747 12122.8105 6590.667 351933.2837 16197.6438 13451.1829 10212.3868 7712.3161 7712.3161 9152.4037 17183.1756 14939.2543 10484.2765 15194.2853 16483.4724 6597.7928 6788.0712 18299.9915 8065.3197 26593.4667 10572.029 17461.3827 6525.7196 8080.81 10551.7833 6057.6827 18928.0057 259348901 rd Organic Remediation Chlorinated solvents NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7469.1913 13382.3024 27994.4735 2708.3951 21942.8296 9352.7476 43771.2611 8359.8905 175314.7339 5709.453 7225.5154 7225.5154 10386.4763 5377.0934 4506.7363 13445.2487 6347.3393 39805.1438 8220.0743 19081.6398 25120.9206 4996.9036 8985.883 2244.2694 16181.8572 5631.614 7506.2096 22041.7395 108770466 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 42684.3289 44882.9432 54864.6566 16283.7559 25529.5046 13815.1761 21759.7374 24564.1459 23596.3812 28013.089 19204.4727 22211.696 557351.0677 48405.2278 28916.2917 34754.7446 20983.2413 20983.2413 18673.5463 74805.9822 20420.1711 132425.9766 46777.265 21904.2748 10832.1597 18621.2963 31069.6295 12313.745 58416.426 23542.2476 33231.8352 14147.2919 18782.6752 41744.3632 14369.883 63729.6948 319902699 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 5568.2043 2534.6075 3004.3875 4955.6314 6009.7418 125510.3254 4596.5699 4671.2407 4957.7588 11399.1816 546850.5687 4952.0277 6748.352 9409.9563 3339.8177 3124.8905 11568.1667 5053.6095 12673.8735 5443.899 7693.7337 6058.4415 4611.0545 5517.2502 3408.5539 10016.7935 115365673 atza Organic Remediation Herbicides related compound NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 12961.6201 4800.7715 4880.0183 2610.0154 3457.0479 4290.1077 6894.6682 3175.5614 87597.2 3849.104 5469.666 3844.5991 3844.5991 3953.363 6190.0022 4121.7292 4532.8384 4752.1202 77250.4111 16308.2298 6428.9735 2900.844 12868.7603 3841.6259 6083.087 3265.0919 3863.1518 4743.7022 2917.8601 7027.5965 422314155 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13243.1915 12980.8224 7274.8532 9705.3483 9945.8929 13906.3034 6673.1423 4349.6559 17841.8142 12307.4191 12022.928 320743.9688 13480.2353 5000.1342 8885.6516 6418.687 6418.687 7640.5264 19912.4841 15343.8704 15790.7014 34281.6891 29575.4484 7314.4399 17294.5611 37463.7638 8263.8916 26092.0072 18722.9847 19070.6624 7979.119 27709.1724 12416.2833 11215.719 15384.8415 153868353 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4634.9759 121243.141 4993.1697 7846.3142 3573.0186 297164326 Sir Sulfur sulfite reduction NA Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 49567.7691 21269.6304 55809.5711 80852.8781 24075.9161 39220.031 44004.0513 68550.827 34770.5248 1130977.2661 35229.9569 68141.9177 54560.5675 54560.5675 42269.7744 61311.4784 38754.2266 58397.6132 24347.1037 53292.7709 36896.6987 141569.3787 73421.3724 138703.6589 32397.5241 35686.3657 36072.1383 46222.4556 291486519 RgaE Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. natto BEST195 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 11192.5347 6298.2926 25874.5346 10816.5526 6158.7804 5424.5787 3395.0257 8270.4075 7731.0901 5011.178 195238.575 11439.4275 6745.0368 11756.6735 7039.2794 7039.2794 7241.9983 16015.5629 6837.0214 4973.2813 14477.7904 9175.8861 3460.7026 8246.4109 15107.2309 4641.4901 19355.7614 29283.2127 19379.4896 4259.2742 5959.129 5248.5494 3032.2122 8151.6109 289503402 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 101815.7045 5605.169 34355.749 180713.3299 6643.483 2647.1197 4252.8983 5261.9202 5087.4462 171743.8835 3614.9409 4568.1598 11207.4737 4702.8559 4702.8559 3691.2254 12883.0299 6860.7635 6281.2867 4945.3872 23103.7326 3391.2279 9424.3247 12587.0776 3295.8627 13698.5577 14658.3204 9198.1862 22671.5026 9726.7599 27471.451 4864.3126 12757.6529 154155295 cysI Sulfur Other NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 11875.8569 15744.7557 5600.8431 10092.2843 8179.4789 1204643.0675 40462.3594 13236.0123 16630.4732 13555.3319 56348.8782 51714.9977 181848.7599 25073.1993 127380.3521 18082.0188 6670.7953 6670.7953 7191.3169 15474.9667 14768.4303 13352.3721 92899.7675 8275.033 23811.9242 14581.5869 26499.2614 105578.3512 589384.6143 61567.7071 20711.5068 12947.2979 12308.4952 11873.2493 56575.9803 9876.9851 76803672 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 11932.9386 17526.9503 8957.5064 5350.1057 268261.3256 3928.8897 7389.7115 3464.5209 94249.4871 5919.0026 5794.9464 3144.118 3144.118 8907.8125 4390.38 4020.2017 22834.5182 10816.8887 5817.3794 4219.6679 10541.9162 5340.926 15351.1412 18997.1229 13258.9816 21161.861 5707.2379 52043.9438 3437.7844 9480.3251 17134324 mer Metal Homeostasis Mercury Detoxification Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 13278.2377 5882.5247 23326.0254 23539.654 11782.3498 8120.0833 6526.6872 14204.1559 10101.9268 4804.4393 200422.6504 10159.7896 7216.4829 6702.4299 4346.898 4346.898 9232.7198 17104.249 12962.5874 9479.0408 16821.509 15842.3973 5990.1537 5283.3126 16580.8009 7183.9186 26348.5438 13427.2414 16497.5888 7930.9947 8468.4961 8873.534 7182.3313 18046.6671 238836759 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. TN119 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 75406.2754 26344.0982 8468.3801 9783.0783 5875.5603 9146.9222 6231.631 32827.2197 32827.2197 7722.99 5202.4069 22377.5198 9816.8198 11147.3198 7934.5161 10729.5203 5647.3528 13026.497 69490.7019 9144.0814 5038.3458 3756.069 110632106 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17283.2023 39197.9388 57133.9925 3555.3217 4215.0099 17619.8029 19718.7683 23057.3966 151120.9486 4633.3938 5914.8294 42634.4283 10364.4392 10364.4392 18290.3332 15444.1407 9589.6559 6233.5597 25196.7728 16972.2809 4815.6855 5121.9958 7401.8986 7335.4199 18728.222 3457.5543 24653.9418 6443.4275 9057.7601 10669.2494 4265.5521 17107.2099 323134636 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 17302.884 13342.6875 2295.1488 9794.224 2261.1556 3757.3184 4271.0572 4271.0572 3540.4051 2514.403 6295.0356 2441.7032 3818.8882 4741.355 2026.5158 2183.7144 29466016 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 210994.8912 208204.8323 37668.351 31555.1953 27988.7627 17819.7274 49199.582 23193.0298 76428.5413 54638.0537 58916.5154 1600030.8568 102745.1701 65752.643 52007.1823 59047.6814 59047.6814 56889.2803 109105.8632 31740.0767 64569.6883 65401.0098 38288.7314 38186.5925 115535.9626 61038.3145 63249.2242 405938.1053 44627.6074 64050.899 27966.8035 42936.173 50326.6947 41255.0827 73914.6276 119947975 cda Carbon Cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 156972.5467 12268.3055 5976.9383 37958.3627 13622.0993 12598.8532 29470.0817 11915.5133 24094.3417 171040.4678 10224.7182 244983.003 11158.3619 24776.2476 54977.0547 24541.9596 24541.9596 11786.1334 36629.375 20091.245 40586.4537 13138.4062 12801.5844 5547.114 18303.3931 22005.8244 11802.8412 34935.8489 23135.6557 28091.0322 20509.4097 15589.3138 42691.8175 18414.9948 18513.633 92439964 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9983.8818 8030.5468 16264.3377 36009.3257 19863.2218 7658.877 5203.5849 4815.8536 14583.4883 8939.8774 10530.0792 116760.9871 9089.3267 11286.7643 10021.2218 7319.353 7319.353 6935.7278 19711.3392 8957.2114 9717.1521 13138.0265 11536.0427 15744.365 12117.7424 15234.153 4575.5817 32599.5506 20138.0859 17049.7368 7583.0824 7314.0056 11925.7518 4779.8713 16542.1576 302411604 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 7239.8809 5854.4207 3202.6537 3309.8447 5373.9426 6586.2691 3023.4877 202714.4278 7529.0661 6536.5455 3542.791 3542.791 4945.1336 19319.8728 9313.3713 10294.9541 8554.4775 7764.8313 4909.4104 4563.8368 10395.8442 3379.4983 15530.4618 8624.1274 8677.1065 2977.0116 6228.7543 5531.0334 4773.9566 11168.1152 169759883 xyll Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7780.3538 24277.7038 6877.3337 23953.2461 6235.97815 3382.81285 6122.89115 9337.6 8357.3816 8430.2385 106885.32745 15069.94755 6050.835 11839.166 17687.1141 17687.1141 5253.2229 16037.8404 10554.51415 6219.6664 10453.85435 8965.971 3081.2502 7901.1576 11247.97115 5964.5776 23347.6285 7824.9903 13286.14305 19688.10995 8749.0846 17419.31385 6607.82075 16731.33715 403203261 cmci Organic Remediation Aromatics Other aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 5145.2939 18425.8847 10058.2975 5974.6824 6863.6346 11455.7636 7822.7537 8670.2172 4935.4473 9539.8492 8230.7125 6736.9444 6736.9444 4322.9677 11621.8149 6943.3822 8795.2968 169866.8142 3983.0173 3692.1855 4459.2673 10110.5288 3210.953 11325.9643 6816.0394 9811.0185 5178.434 5291.2749 6624.5357 3983.0194 11839.6926 372472983 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 16692.3659 22006.2039 2320.4643 79158.1326 7646.4132 3197.7129 3197.7129 5907.9207 4371.531 2787.2203 10413.5404 3136.1511 4235.995 4053.695 221070135 pcpe Organic Remediation Herbicides related compound NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8467.5311 4617.4766 6060.8306 7997.8152 6064.1688 24167.2657 4218.9671 26163.0548 2808.0725 404271881 B_lactamase_A Virulence Antibiotic resistance Degradation Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 38910.6756 22486.3706 40441.4262 20185.7054 7327.5604 63642.9715 36086.4768 16930.5686 29063.5793 33613.4486 26696.2927 443141.148 38801.129 39047.635 45736.5338 36619.9196 36619.9196 19552.5284 66254.1007 31539.1804 56738.1778 85776.4638 26508.8751 70677.8867 33492.2851 43644.4848 41908.2482 123499.7484 36480.0367 66198.879 49633.235 35491.3959 38932.5329 28527.499 53247.7148 206601957 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 98531.4574 12630.4196 37833.4615 1231793.2436 18079.5805 6408.3041 237932.1099 37542.595 42237.4773 55753.1825 77939.0239 31533.5354 899852.233 48456.1688 70865.733 92934.7855 33729.0839 33729.0839 29427.3798 64410.4288 31496.4013 38517.4009 49806.4606 58097.9661 24152.858 25439.583 46258.0942 32806.955 107944.1672 27511.8453 48748.518 37703.0223 35583.3043 37764.0198 50350.7535 68151.7579 119695411 terc Metal Homeostasis Tellurium Detoxification Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 24839.6983 38848.5492 43830.3536 66454.5395 13746.2531 17442.9548 27234.047 33974.0614 16537.7258 35396.8375 20433.2207 285434.4277 30195.1191 26323.7307 25894.4681 28862.5218 28862.5218 24720.1593 43739.7379 20891.4913 26038.5742 21674.8547 32922.2065 16799.5247 33462.0376 28960.414 21766.7961 69014.0957 29439.1678 41901.9548 13178.117 21185.4352 20420.9626 12761.8589 12798.3787 38427012 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 334082.2374 29443.6914 58804.8062 140627.5415 178804.3932 77331.0326 131167.5345 48659.0123 102679.4552 151548.3163 92516.7975 71491.1885 1725732.9481 70105.5594 181400.3755 226161.7536 134467.4376 134467.4376 124852.8175 89353.0286 55365.6988 88060.9312 143503.1548 125969.4177 77172.9843 95140.519 130704.8205 53980.8313 136292.2871 106413.8918 115894.7541 49042.4751 58712.2771 61169.4491 44060.7728 182611.5569 293602415 gdh Nitrogen Ammonification NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 30134.2928 2073.2521 2762.1135 2871.6232 4948.7815 15047.1502 4112.8684 4112.8684 5988.5057 4063.5958 5410.4506 5157.4491 5310.071 2031.6052 2539.0409 4429.3095 193244841 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 14978.3416 7560.8125 12804.204 6984.0653 15720.276 12518.1687 11207.8535 6662.7263 12853.7131 23062.0802 7389.7683 7389.7683 3441.5767 22260.5074 5391.0577 5262.3727 29905.4604 12552.2241 5440.5359 7176.8711 5496.7235 3534.0498 15758.7701 12292.5322 12149.2869 4235.8645 9878.6024 6215.2673 6490.5216 5461.5741 294815120 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 6305.9697 12659.4119 6954.0703 10122.1968 19928.0896 3373.5685 3984.0011 9884.775 4707.8466 4748.0386 6141.9819 7139.929 5717.6125 5717.6125 6825.9926 13744.8355 13257.7607 13150.2453 7147.1313 2893.8022 31823.5885 20574.4413 9380.6222 26577.828 3354.708 10096.6306 6978.1007 7115.9757 295674267 protease_serine_fungi Carbon Cycling Carbon degradation protein Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 76104.815 107941.3841 66796.3722 51988.3668 65674.3621 12333.9114 33074.9802 52150.908 22657.1874 56806.9208 81700.2692 41712.7204 867263.9626 285638.4828 83155.537 301112.2376 49352.7942 49352.7942 41120.3687 161737.0513 133287.204 86344.7413 182560.8984 112915.7723 41665.7564 57731.3068 65066.311 58567.1448 170942.7601 86225.1001 96733.7918 29599.3278 56094.9039 76429.4456 40088.8472 97747.0368 225194062 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4879.4701 5023.0995 10028.5197 4748.7334 3670.4016 3339.6071 10334.1091 15515.0947 6945.4653 8088.4425 91149.2562 7630.094 20828.1769 7509.2041 6122.3536 6122.3536 6063.4587 11714.0469 6361.0927 14101.155 4779.5021 3279.3422 5308.7758 13936.904 6310.3621 18135.31 9506.4426 9836.1844 2686.618 5004.694 4554.0137 3293.7008 14231.8803 198266804 alkb Organic Remediation Other Hydrocarbons NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 13057.1744 8060.5432 439904.2127 4913.187 3112.4436 3711.348 5572.7831 3489.5845 126322.0348 13178.7333 11456.8851 2266.0494 2266.0494 5044.7652 11224.4133 6736.0678 10111.4718 6104.9281 4807.772 2728.9013 3093.5789 9800.0102 4657.2304 14963.682 6956.9307 7929.9709 5272.9229 4288.9679 4391.0929 3706.3882 7859.4366 169640156 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 13146.5441 6474.4965 6063.3592 47130.5029 19856.8303 3174.3969 19703.4917 21113.612 11947.0973 240332.6606 5931.3725 5523.7311 8055.8145 6321.6057 6321.6057 4172.3665 14839.7835 11097.4687 16641.1804 14089.8324 13592.1648 7131.7003 10530.1239 9566.4581 4358.9164 17039.2664 10222.1938 8420.2807 4556.2227 7326.1902 9301.0963 4627.1041 13477.412 323502060 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium symbiosum WAL-14673 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 18199.9685 10269.7195 8151.5799 8335.9688 10321.2109 14597.9225 9042.1674 18238.313 34946.2622 19711.7657 297330.8599 19891.7793 15184.8572 15831.2442 6615.9872 6615.9872 9473.5431 25481.5454 15784.9267 12190.1818 21003.4533 19565.2321 14727.1999 15422.4179 19369.3376 9876.0701 39103.7329 16441.4219 17534.1173 5944.1218 20017.2811 13971.4156 9451.2771 30051.5823 77977649 ppx Phosphorus Polyphosphate degradation NA Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8298.3249 7837.357 9818.68 5877.8624 9406.3879 2353.8792 5571.709 6322.1858 31740.8484 127645.5392 10453.1301 12708.283 6702.8319 4165.024 4165.024 4335.8925 14599.8485 10952.5745 9639.6179 7520.5404 12389.643 5279.4003 4768.8873 32995.4887 4902.4664 19553.4198 7367.1905 11050.5394 4662.1188 6313.1857 6983.3074 5073.7685 14684.6646 89045485 mer Metal Homeostasis Mercury Detoxification Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 4881.0304 11405.998 4572.8114 8537.5245 8537.5245 9554.4965 13005.4584 3803.1137 2273.6026 20279.1389 34270.4468 4203.075 4453.9789 5280.2466 2326.2065 329848367 amyA Carbon Cycling Carbon degradation Starch Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 13714.7309 7736.1637 65550.7353 6349.0757 338823186 cysI Sulfur Other NA Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 24899.7989 33171.1631 6033.5086 15237.7527 13962.2282 102113.475 9177.8583 21411.3432 17039.1826 39383.4024 309150.6792 17621.1037 26747.5698 28580.3843 30036.4032 30036.4032 12415.7296 43961.5439 15490.3736 16643.5926 29945.5764 58334.8993 13598.4092 85433.4045 19883.715 18146.3209 54910.9145 29696.3938 32695.6966 13362.4512 16683.5377 14874.0303 10816.0477 25529.5402 388590953 exaa(moxf) Organic Remediation Chlorinated solvents NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 40646.0648 77499.1914 37389.287 9242.9175 10535.0547 21696.6998 14083.1914 8322.0154 21840.5649 22734.1542 24596.4411 258448.3651 48127.8253 65497.6486 27057.91 22400.4587 22400.4587 17303.8016 134007.204 19010.6095 29390.6716 39522.8049 40547.3816 43387.3136 22008.6397 26325.2276 23932.1563 59773.3761 13612.8363 35570.5796 10369.6884 28675.3831 37582.1982 20149.4478 34827.3434 116048302 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 4644.2843 4268.1238 7352.5963 4850.5153 3578.5321 3571.7887 20405.2805 20405.2805 3903.7582 3438.2591 1938.8822 12322.2756 2124.8076 91799470 glucoamylase Carbon Cycling Carbon degradation Starch Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 4682.116 4809.3216 3967.3206 3868.5309 6936.046 2684.0048 357939130 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 431185.2032 2360368.4524 142735.3574 1711810.3863 127637.9077 31366.7749 167194.4329 273616.6694 67913.505 296214.5343 290008.609 263119.5454 5654088.3369 140143.6034 108853.7487 288647.2255 211619.3297 211619.3297 295072.4085 586872.3217 112986.2816 240535.8349 318207.4788 301384.2593 113760.4188 202844.1912 139362.3992 134425.1347 325920.9712 251950.2057 248497.5703 176663.0349 310190.6779 312276.6265 93773.9574 914445.9623 111019375 one_ring_12diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 12232.5774 3214.0749 4602.6524 5061.6379 3840.0334 43497.9817 3623.9618 79023.5939 35690.2455 7782.7365 4897.121 7427.9867 7427.9867 4538.73 11837.6257 6461.674 74910.2201 6554.3028 13732.0403 24687.1619 9699.9218 4127.3552 10263.724 8192.5736 8180.996 4902.4844 7123.4006 5656.3286 10710.6094 5143.8748 70992949 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 4795.6117 2484.6215 2563.5005 3093.5984 3742.9461 6150.9629 4979.2292 5945.8326 8997.4634 5246.6831 1779.1436 2771.2363 3869.3235 7215.6333 365331114 catb Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 21592.5685 6696.5285 3285.8596 3061.0889 86619.1983 6438.4898 10231.7124 2203.3954 2203.3954 6934.4655 3795.3607 9476.9787 5455.4423 2752.658 3583.9911 2098.3085 20576.1184 325530419 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 20803.9 9279.4748 7870.3679 4146.1847 45340.9103 2029.945 4832.1982 4062.8144 100666.9788 7331.082 7332.3891 6269.4104 2691.6225 2691.6225 3353.6539 10739.8329 5503.2517 4324.1922 5560.9031 6813.4286 3044.4773 2625.8858 5739.0044 6554.0237 9395.3443 3918.1622 8047.739 2295.2304 3251.3902 3531.2726 2320.9839 8736.6959 114771560 ppx Phosphorus Polyphosphate degradation NA alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 10311.7227 13963.3139 28468.4825 6605.5416 7170.1244 5236.9629 11687.5213 8981.0976 5314.7377 200910.6796 12551.7908 7160.0538 21753.3805 4390.399 4390.399 10714.4041 17323.7542 13920.547 10357.091 11724.1065 12024.6591 8706.2428 5315.5347 18746.1724 6472.5306 22482.2317 18845.4906 15081.9637 10278.5476 9535.6935 7847.9032 5928.0182 143142.2857 254451139 dmdA Sulfur DMSP degradation NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 9685.8287 8432.6693 8823.3053 19625.819 5536.3581 11513.5949 6408.3636 6455.2132 7700.6073 8720.4788 4983.8281 245557.3925 8709.032 8097.2136 11813.9815 8554.584 8554.584 8849.8914 18446.9361 12040.9663 9440.7926 14974.4676 12091.1702 4476.1264 6188.1526 13137.547 7142.9318 29413.3542 12860.2768 14496.7194 7128.7656 10727.0652 7927.0592 6873.619 10931.3898 365174301 amyA Carbon Cycling Carbon degradation Starch Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 5148.2975 5731.7528 5207.1477 2272.271 3272.1391 5181.4941 14740.691 88874.3617 4599.1435 9346.0859 3911.3303 3911.3303 3051.9196 5863.1091 5358.9462 3598.9296 5151.7603 4915.916 13634.0891 3535.2854 1658.9742 7059.2678 3771.3898 160706444 glx Carbon Cycling Carbon degradation Lignin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 33414.8287 9761.4308 291299.7388 12661.6603 3965.1072 16552.3596 7514.951 89683.4172 257824.5546 57539.9086 104637.1901 8508.8766 9295.4795 23603.1771 43945.7778 43945.7778 14693.3495 154917.8456 37570.4236 14684.9007 16628.838 9366.7852 7106.6401 18101.0837 17761.7207 8924.7886 36384.5983 34700.6071 180282.7164 22724.6112 9889.8678 31109.3225 4167.8832 23559.5283 319941736 pgk Carbon Cycling Carbon fixation Calvin cycle Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 8783.0397 7700.7986 11631.2322 2855.5538 7142.2162 9896.5559 16991.3246 5794.2154 16819.744 93601.3982 6851.1922 32914.3634 4977.7408 8948.8317 8948.8317 6763.1878 20683.7996 49425.5419 5815.6274 8032.6586 4895.4982 6671.036 6253.128 6875.3617 6175.5713 37523.5133 5224.5775 16662.7364 6287.6862 5720.1271 11456.6924 5415.0774 5127.1927 291297235 fccab Sulfur Sulfide Oxidation NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 7701.3857 5344.3699 4001.8465 4709.5325 7092.5353 3704.9163 170092.724 8859.7716 5210.6926 9545.6221 2738.4994 2738.4994 4607.8017 9054.7868 6646.0866 28503.9048 8303.052 6659.6801 2572.3938 2813.9197 5932.6553 2664.0582 15789.2338 61955.541 11197.3031 2990.5864 6648.5522 3934.2953 3748.437 7899.0973 196232681 mer Metal Homeostasis Mercury Detoxification Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 6269.8939 5831.2227 6999.8093 4760.4284 4760.4284 22494.8421 6468.5726 4373.4803 6039.2821 2594.7107 2402.7257 27024.4662 6474.1671 6515.7984 3237.8683 4494.0476 3204.4529 384089250 ppx Phosphorus Polyphosphate degradation NA Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 22443.87 7137.8114 6729.1328 7829.9626 5185.1264 2724.6603 4193.1561 5366.3621 51752.1633 53424.2717 3130.6776 12152.6771 7927.3709 5271.6693 5271.6693 8546.3843 14316.5526 11983.2404 11657.3825 13202.5849 4264.7297 8587.7908 6114.9209 9380.4525 268608.1654 39473.6952 19547.0842 7103.0794 18172.3644 7748.9272 4951.7583 9339.0887 94967932 xyla Carbon Cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 13120.8761 512540.7827 153233.4885 6321.224 8148.4478 26490.5614 2619.2592 4532.8637 77976.6071 4722.6211 11756.403 4278.3145 3386.2956 3386.2956 2784.7778 6943.0612 4171.4147 9553.4649 4812.8895 7950.8443 10641.3018 4132.453 8097.5284 2164.1078 6223.4881 374984085 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 110651.4761 42311.7268 54558.1895 8127.2785 25355.6647 30328.3609 32404.536 12951.262 23142.6586 21908.9182 23821.3962 62297.7425 1703960.834 17721.6601 14447.3072 36646.0084 71613.1678 71613.1678 64458.7754 47438.7122 15701.7818 415025.6556 77852.6766 43492.5503 34569.6059 21935.3661 59284.9123 48066.2472 78571.6133 43071.4786 131364.4869 35054.5029 70523.3836 19177.8354 18939.8684 32435.5973 371589225 pme Carbon Cycling Carbon degradation Pectin Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 43077.5326 19971.6038 9671.8279 6241.109 33382.7428 15340.4562 9433.7553 14962.4871 22955.8976 35191.3767 789351.4824 25877.7152 23933.9502 22794.3588 19153.7137 19153.7137 9549.827 33342.4888 19296.3607 19053.9534 339706.6197 13757.3722 61022.7194 14105.3195 22687.6198 11430.2655 66001.398 10826.6313 21077.1367 22310.89 12392.123 19375.3389 13810.7003 16570.1214 14026767 cmci Organic Remediation Aromatics Other aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 13020.4963 9817.1982 13210.0818 28684.8611 14035.0333 11605.2611 11157.1272 12196.9984 18715.9421 9888.6603 305840.2004 34669.5829 15719.5772 14628.782 8568.5796 8568.5796 10536.5395 23588.7968 16582.1003 15215.4539 22411.8101 23525.5949 99242.3422 7219.2382 25291.7268 8066.6576 31719.5312 31162.5384 20788.6496 25672.6009 17135.9957 10530.0298 8622.6135 23930.7493 161163674 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 20380.2462 6088.0017 9358.9364 6260.6068 22799.5472 2478.1671 10119.0991 20122.6833 8775.9931 199692.9246 13319.2564 11515.6646 17502.3999 6620.0663 6620.0663 9943.6046 16113.7307 7403.6217 8619.6547 11748.8364 10675.4909 9895.3966 6633.8597 10223.7413 6276.8723 22544.7221 11836.0224 26868.7549 6641.7901 8600.2599 7289.297 5001.296 51046.3354 387887466 xyla Carbon Cycling Carbon degradation Hemicellulose Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 111869.1776 64808.9015 136179.4722 29857.0829 14787.0273 25678.6013 32385.2793 26183.5647 161252.4619 33436.6535 27373.8264 33750.7978 438765.022 31774.7961 46992.6163 50413.7299 47415.5513 47415.5513 22466.6826 54331.4873 18240.1309 75824.0024 69380.2958 1122165.2276 75837.5361 26074.7429 28516.9896 73692.1445 47548.5204 25146.9767 49561.5424 29115.0199 54685.7289 28766.2443 18118.6095 86866.3977 407768895 pcag Organic Remediation Aromatics Other aromatics Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 18726.8547 26640.7447 15940.091 2342.7643 4541.2875 5530.8873 53290.1948 85209.8184 5487.6624 7380.648 3824.709 3824.709 6994.1725 4529.4357 7439.9992 20661.9599 3199.7666 7357.4582 6128.6476 12541.1045 18667.6711 9316.0232 3210.9324 7344.5767 2476.6506 14468.8085 302435634 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 116521.2822 28940.5362 252872.762 27658.1949 7152.7801 17402.6132 15005.989 43511.6203 32128.9447 43571.7546 112550.3786 327277.5779 55614.8003 74153.6077 55820.4437 41045.7346 41045.7346 45941.7922 62751.3538 59912.3101 90775.0348 65650.9405 39573.1081 328922.2538 98942.4465 35627.3669 70580.7595 125526.4661 59107.9481 86070.2288 31322.1076 33687.4072 74474.2131 40008.9283 27596.4303 226090968 ppx Phosphorus Polyphosphate degradation NA Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 12218.7855 2802.1882 4001.6681 2293.8065 2293.8065 21254.657 8182.7448 29946.1642 2904.2533 4116.0637 5601.5363 36615.4367 3717.0715 11356.0118 45254.0689 302547823 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 347947.3247 27383.5629 36614.6545 51009.1898 10857.3963 27437.5736 290854.755 42348.2022 34684.8823 33350.3446 40563.3223 829776.6944 46012.3525 36853.57 46081.163 54661.521 54661.521 478959.9539 85708.7931 43322.3432 129075.7925 63767.7276 32508.3483 59327.6444 45613.8926 186502.7388 33749.535 148476.8133 74853.701 61176.1221 23567.7553 111203.8623 49821.5071 226034.0028 43815.863 300390416 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 10661.116 18508.5693 6676.0332 3687.2697 6866.5485 2808.1675 9112.8501 7358.7073 19120.6282 96357.8632 8851.9667 7859.4233 9998.5942 3694.274 3694.274 4903.3866 10079.8001 10131.5912 8761.2512 9117.5308 24876.7061 5752.2608 17961.088 16232.8177 2786.6375 12441.4417 11785.3766 10059.2552 3994.4288 10192.3977 7801.3445 3683.1447 14545.8423 93356206 soxY Sulfur Sulfur Oxidation NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6525.4945 6490.7857 3995.5814 5250.1075 3283.204 4420.4788 5040.9079 4758.2652 96961.9216 11911.4549 5399.0356 9568.1638 6382.9236 4089.5082 9020.7345 6563.6247 6224.0041 2883.2921 12577.7415 7996.0082 8625.1711 4099.2338 4367.0692 3588.8128 4070.69 7274.8873 343523406 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 128758.2332 17758.8022 54556.4535 39292.1143 56664.909 325959.2856 30936.4709 50347.6481 42294.9597 61831.5619 132577.8561 66915.5237 1268296.582 112868.0023 119172.2257 136052.6589 84278.6892 84278.6892 41151.0711 131193.6785 39829.434 90066.5064 107766.8772 68278.0964 201213.058 36397.9261 70008.8237 31386.3269 115685.5884 44230.7603 89772.5923 63806.356 52032.459 71372.9804 50036.6848 79881.5686 389774672 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 241676.6064 56578.6062 127965.8872 182519.8872 281581.9955 454553.9429 87360.6418 108238.1969 362641.4156 170823.9829 218754.5229 181831.5004 3424304.4252 397187.9951 327828.0596 285070.0483 195971.7492 195971.7492 167349.9062 153031.4387 77640.194 280429.8009 194265.4773 181412.5155 80452.2985 93721.959 302001.8791 195728.4831 209965.6228 152394.9768 241731.5334 82287.489 100843.9891 117510.6987 54425.2037 240298.6529 262166695 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 4489.3988 31021.2911 6203.0957 3027.5701 2353.5034 5760.068 5028.1436 2837.1574 97888.9148 6537.1271 7872.253 36864.8258 3038.5378 3038.5378 4802.7359 10516.9452 6992.2014 7740.343 7735.173 4606.2641 3970.051 3520.9957 8402.3015 6066.5845 17782.3892 7079.4226 8113.8025 45965.3211 4682.2514 5322.5601 3624.8412 169688.0091 170690075 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 67053.1955 9887.3739 17831.2964 34674.7247 55789.7198 23065.5513 51843.6614 25780.4393 44348.8342 31526.1585 37813.1382 23743.7326 877221.3504 45451.8183 42522.4432 29745.9913 35178.8909 35178.8909 24755.6816 53758.0958 32609.7775 40520.9927 45045.5473 71985.0141 22400.3622 20940.6551 43602.5917 21558.6497 84230.9012 33738.3862 39923.8798 26774.1377 31260.4931 26743.9211 26041.958 67037.6478 192764360 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5085.95 6943.454 6721.1496 6721.1496 2784.5614 284052227 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Arthrospira platensis str. Paraca superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 18020.9918 59191.0629 17708.5945 4267.2091 12585.4002 14529.427 2794.9174 5248.2449 14953.6493 11224.2777 219505.424 14024.496 10516.3281 7241.2774 11185.6393 11185.6393 6842.8051 18481.4135 7778.913 100625.4005 27925.2216 5148.6446 5476.6718 6532.9474 7203.8411 4699.4366 14742.9521 13964.4833 19079.7936 3316.5147 12940.7984 9771.5809 6896.7069 86471.4299 160934490 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 36820.1417 6294.7766 18180.4265 3016.0347 9139.2543 10429.0202 5007.2156 10519.4155 8905.9584 3919.8725 59589.1517 9112.4318 9112.4318 11101.6034 74677.7011 4972.1397 8558.7864 8157.3963 11413.0347 5807.2567 9328.3991 3811.5929 46718.6732 14760.8847 10384.8321 2670.9901 7171.1565 8780.1399 3195.0763 11792.7452 139002966 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 21111.0823 12746.7814 7198.3902 12899.1692 17514.6735 13387.1654 8521.825 8766.1797 13603.3743 6285.7216 273377.9317 17043.2488 10230.4649 6630.7905 12799.1638 12799.1638 5412.5112 20697.1187 11477.3065 9006.1439 31687.0854 26566.7685 6298.2863 9063.6946 15548.0067 5766.2746 280570.0857 17155.2542 26432.4082 4966.801 12565.7301 29832.4503 6329.1845 18950.3439 381387241 amyA Carbon Cycling Carbon degradation Starch Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 10953.7686 11428.3033 14207.05 3252.2586 6594.2926 2479.3077 7484.1687 8561.0039 6606.5034 910893.8928 11769.092 11192.8021 17449.1364 11454.9057 11454.9057 5277.6135 7359.3574 5222.9917 6767.5702 8415.1776 3488.8059 6210.796 12163.2378 5012.1355 8869.3362 11580.0771 18169.4394 5907.3636 8132.6107 6690.2092 3282.3297 8016.9488 189206295 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 11378.169 35544.8854 5730.0234 5199.7814 6037.5287 19501.6216 9815.351 5249.3086 100064.071 18485.6482 10249.6341 108130.5558 7884.1367 7884.1367 2865.0946 47419.2819 9667.7133 10113.5122 6946.9705 46205.1383 4227.119 13794.3546 5703.3191 15331.6899 14393.6357 16535.4383 4089.1542 7601.3007 4582.9796 6805.9447 186470743 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 9778.256 6581.1773 4992.5775 9206.4601 6893.9596 4137.555 11537.8414 695224.8808 4100.7137 12676.0408 8084.534 7453.1055 2832.6185 2832.6185 3714.9889 11287.9506 6695.2244 19006.0805 5791.2047 7426.016 3653.4787 8943.4983 10866.6559 4423.8577 16896.4288 7550.3223 15388.3998 4665.4909 5374.9063 21362.6391 5083.9881 9551.1272 210068491 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10490.7474 12950.5838 9251.1152 20734.4167 29506.7662 5273.5198 14785.9159 14668.8629 7854.1916 11402.8024 11569.508 5381.3035 225400.8202 14602.4252 24947.059 7865.4302 7522.4591 7522.4591 8844.47 21797.4875 12357.6193 12609.8792 19747.7375 13725.4717 6871.4267 9062.5586 16219.0665 7421.4793 23530.0715 10281.5214 15530.5712 7981.2709 9070.8723 10042.3255 7808.2195 23604.3172 157837417 pcag Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 78506.6242 64673.0353 4799.4937 7817.4267 2433.8673 2433.8673 25218.5332 6700.2573 6082.7039 5469.6334 4607.4954 5159.9681 6006.4961 5502.6928 5063.529 4614.3195 166087375 mer Metal Homeostasis Mercury Detoxification Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 11237.0508 18885.9783 27402.9195 106875.4221 20461.6878 5873.2796 53606.7255 5671.967 11866.614 13081.65 18350.2592 420946.7671 20798.4641 23914.8374 86558.9898 31750.2425 31750.2425 12657.0022 32095.9893 22302.8546 17803.523 25251.204 8955.0137 9661.2424 19578.1833 46559.9704 41820.0669 106166.194 71318.1811 35981.4455 16120.8053 16942.4657 29594.0654 10096.1776 14231.3865 119952422 terc Metal Homeostasis Tellurium Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 16696.8395 5562.5024 9672.9719 3806.6945 5041.9436 19533.146 6356.5551 11526.9728 9068.4115 111042.9451 6734.1503 4959.0781 16853.6046 20605.9039 20605.9039 4462.1901 10280.9936 8239.4586 5439.9509 10708.7409 8792.4877 5772.1522 5353.703 7349.3926 11665.0164 18867.7651 11236.5025 11860.6768 3154.1455 5644.1711 4536.5028 4765.1064 9459.6075 61611849 nagg Organic Remediation Aromatics Aromatic carboxylic acid Delftia tsuruhatensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 151044.66435 118917.9018 62618.3293 88845.41695 111153.272 96306.83845 46133.3152 62199.12703333 40946.0404 69099.893275 51582.572875 969994.2108 82373.0375 76483.8257 90512.077625 49854.035975 49854.035975 22514.27156667 70818.20986667 39091.568 56752.36726667 82602.822575 73600.56205 42133.1129 34245.6665 112123.3218 31136.054025 174763.70625 60701.33386667 59623.046025 55955.30236667 50209.82025 43015.720575 23478.7111 92299.51525 330809720 catechol Organic Remediation Aromatics Other aromatics Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 40438.514 17733.8921 23611.7087 34689.6669 13236.6681 9547.8579 21217.5679 24176.7437 13553.8831 31805.0885 40193.4703 14986.1666 497256.3552 41007.5499 30151.5406 24963.477 17696.0906 17696.0906 25616.8282 38814.9302 24286.1759 27025.0889 36562.6319 44222.7919 13468.9946 13605.138 35666.8924 17300.9617 55778.6229 29753.2284 36873.7915 15211.0483 23349.8774 19565.7263 14329.1182 40701.2683 299539200 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 9925.9989 8504.6763 25587.5442 3426.6886 7573.3833 3017.1664 7573.9856 10036.2831 19959.9508 329179.9704 8903.1602 11423.0515 5784.0332 14029.3043 14029.3043 6314.1512 30881.1641 6798.834 10161.5849 35644.4579 57734.2275 33461.6046 3787.3711 12055.4773 9792.1101 592251.669 15343.7975 11784.1884 4168.8893 8325.0621 10987.5235 60192.7231 10201.9418 171851576 ppx Phosphorus Polyphosphate degradation NA Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 11541.51 11936.1225 2690.0244 3662.1504 7608.8921 7754.2176 11764.2848 4933.9176 5646.3828 5936.4777 12555.0563 2367.6246 3225.799 332535754 alginase Carbon Cycling Carbon degradation Alginate Pseudoalteromonas haloplanktis ANT/505 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 8048.7888 12110.1881 2618.613 302533126 urec Nitrogen Ammonification NA Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 102982.5668 95384.463 193761.0904 208103.5138 103160.7674 54167.1019 341356.8415 54375.1748 89423.6936 52466.2458 125678.652 87631.6721 1042541.8127 141956.5539 454997.9437 107071.1328 93928.3551 93928.3551 79526.1691 80806.9262 88969.1539 83246.4689 166537.2442 67650.4174 62797.2362 56674.2528 88508.9076 68578.6471 153110.2268 97294.552 93934.9687 22957.6264 78312.9836 77931.8987 35145.8886 68411.7133 379999256 amyA Carbon Cycling Carbon degradation Starch Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 12680.3172 6636.1394 50594.3765 14328.9137 7274.999 9276.3456 4885.4982 6981.5828 11756.8453 10132.7267 350524.7812 11172.4062 10433.1846 59964.2032 13073.9875 13073.9875 5443.5861 11289.7003 6981.7093 6908.9308 58241.7287 9756.6818 8092.7619 9214.9489 14679.0198 6360.1119 23306.551 6935.0565 12798.9563 2951.3215 8746.1944 7231.7587 8630.5881 5787.968 381147101 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing archaeon superkingdom:Archaea; 83288.0559 171922.3351 40309.8109 123274.6022 1607740.504 21774.464 35782.9203 245548.1582 36111.059 79501.4779 61710.6065 39420.8162 1114543.5427 45553.6022 52684.3369 677291.4672 24767.1155 24767.1155 45832.4665 337719.3321 39997.8858 61642.3782 93377.4626 78215.4324 44552.1191 38975.1804 299834.1254 258606.4819 141696.7018 99240.5672 125692.325 75222.8316 96904.7407 267691.9662 59680.8265 69788.8775 373958282 pme Carbon Cycling Carbon degradation Pectin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 9276.4846 158934.5346 8486.9315 5532.5404 4735.8958 2358.5253 8410.6247 9901.3863 4455.9189 83220.9931 8160.2911 5625.9795 5551.3272 3293.3634 3293.3634 7266.5506 11963.6605 9628.1601 17124.0281 18023.091 28545.8998 8242.5313 2943.4297 12421.5621 10725.1319 17239.7375 11180.5691 11319.4704 3483.0183 5937.3233 4065.8144 4708.1902 9239.9125 290467789 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 4741.2653 3881.2028 10281.7854 3157.5093 5337.1536 5065.8867 8220.3651 4204.4773 4961.3722 3753.4311 9212.6406 161661113 phytase Phosphorus Phytic acid hydrolysis NA Yersinia kristensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 4688.2263 19778.3328 7305.2594 6685.0651 4644.2081 5517.2559 5164.1008 56321.046 4677.2074 3129.6065 3129.6065 3442.7723 4995.8556 6056.4613 3051.3215 5897.6325 5286.9072 4405.7267 3058.4899 2160.1838 112803043 ppk Phosphorus Polyphosphate synthesis NA Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 4609.996 5372.1858 9702.0188 1989.9457 2451.6793 4021.2828 230278.2076 4519.321 4225.7142 4588.767 4588.767 8970.5147 3847.5353 2695.8941 6097.4642 12376.7495 9951.7917 2510.093 2502.4367 262076772 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 71809.5162 42477.8902 49096.7856 12077.987 20383.1545 30020.0505 60155.9109 59493.9371 31161.2904 45439.4262 446096.4552 31529.4496 56389.6065 167018.0171 24258.1771 24258.1771 161619.8524 65173.6867 21802.2949 161753.0678 56733.8482 120339.2332 36372.8451 46317.1978 39400.2783 36223.811 94094.2285 38005.0058 51737.8894 28646.0124 30601.0312 32860.9567 41183.7604 35821.7712 238578177 p450aro Organic Remediation Aromatics polycyclic aromatics Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7384.2197 4329.5214 7661.5779 4128.5639 5812.5846 3408.7228 4135.6272 5166.5911 122250.4481 6445.0864 5319.7897 3162.0196 3162.0196 4815.787 8747.99 6029.5061 9314.1077 9465.3947 5613.5344 3710.4706 10055.1316 28492.4004 11536.0529 6228.9646 11976.1646 3920.6311 4111.8643 4955.8082 3661.1934 10115.1983 118424445 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11075.8568 11545.6206 2027.858 4256.993 4055.088 2581.7276 113941.5791 3845.7136 6948.5241 3999.2623 5850.7927 15937.7485 6052.7725 9768.3438 2948.9644 3024.4194 4206.799 2944.8426 4278.6701 156742878 accD Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 19622.6107 8431.8769 32091.7588 46687.4254 6062.8153 15036.6891 5190.0295 16419.0089 21154.8694 8144.1607 163584.2958 19375.3609 9720.7905 61864.286 6215.2432 6215.2432 35266.3735 20196.4059 12425.4347 29196.1497 12122.0236 19851.0044 9833.5126 9241.4873 13380.6406 18572.4835 37631.039 19307.4313 24617.1857 7653.7611 150888.0451 9905.4037 16992.3169 21821.5246 145238310 tfth Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 13459.6594 1109183.6327 327952.4652 132987.1976 80009.8739 38712.484 25529.961 19008.3451 13857.4522 42884.7455 14921.8055 536806.5504 24313.6256 33606.0023 39272.9788 25133.932 25133.932 13931.4948 38396.3953 25466.8642 46546.1607 8018.3255 11726.0267 7465.5404 17405.0642 70999.0298 20181.5095 63228.3873 53259.9493 61205.4698 21159.9614 23232.3764 18366.1883 7317.1848 11096.4064 133778530 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 15877.0076 12045.6391 3291.1524 4783.0502 40247.3574 3687.4244 12130.1931 19206.1163 539270.4711 7213.1648 12067.652 5684.4238 4983.1592 4983.1592 3637.2619 13838.4211 7376.7687 12997.8525 59102.5804 10741.0832 14329.9479 5554.9733 24944.7308 4954.3103 20738.644 23054.9188 19806.6634 29869.0159 5911.053 12161.7933 10438.6861 7510.0517 388528791 nasa Nitrogen Assimilatory N reduction NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 22238.3435 10774.1942 40199.7761 27785.3682 26560.2017 5887.6967 15151.2916 8162.5395 23132.4699 18638.2116 17628.8514 517913.1979 14486.1729 31281.4369 20466.6244 15907.0811 15907.0811 9487.6755 67612.2571 22698.9237 21976.8166 22317.4047 22948.3376 18501.9356 11792.9868 29229.6262 8200.2139 45287.7602 11884.2882 19523.2129 9705.0578 14223.4881 13236.7808 11004.4576 20638.9453 145047394 soxY Sulfur Sulfur Oxidation NA Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 105549.4471 7610.7525 16634.4862 373251730 amyA Carbon Cycling Carbon degradation Starch Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 4488.4506 5518.5315 20339.5171 74967.5116 2942.5809 12958.5256 41363.2357 4854.3252 4647.4078 84646.8953 3707.7128 7370.5406 9908.8055 2041.4397 2041.4397 3203.5089 8926.9432 10024.5407 238452.7512 10299.4021 4366.3372 4707.5913 2552.9644 13349.1182 10088.385 5686.7261 1986.0254 4509.6239 3059.5757 5801.0736 86574218 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5061.3026 5061.9558 21283.6064 10377.7277 2983.8089 3248.9126 3597.4034 6492.6177 15272602.2011 6784.22 9415.344 3830.5232 3830.5232 2720.8807 10402.8207 4254.2714 3379.2325 4841.7475 4244.1564 52679.1769 3388.6243 5561.9991 4187.9524 4754.3973 7823.1001 3389.5798 16625.7565 5685.0504 4072.9118 5681.9443 10863135 nifh Nitrogen Nitrogen fixation NA marine stromatolite eubacterium HB(0898) Z07 superkingdom:Bacteria; 6259.5665 9867.8819 7598.4476 4746.677 5874.4833 2511.0574 4773.8665 4874.797 2603.5055 109539.8508 6795.978 5320.6395 2420.7738 2420.7738 5304.5763 9742.4593 5976.3605 8263.1179 6166.4613 10894.0895 4109.4338 3401.3521 8976.2065 2991.3704 14246.7005 6015.3242 9313.9806 4184.4331 5643.0788 6032.2353 4078.9123 11039.2318 422314499 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 94456.3687 103770.7776 34697.9523 30681.7695 6871.5123 26333.9232 31482.847 36036.0033 70547.7134 52279.1616 27915.6875 1033923.8705 69046.1076 41282.6936 77611.3607 56843.6447 56843.6447 39257.1457 65185.4351 112311.2441 41141.6792 79142.3138 130935.1796 32043.1315 33025.9956 65753.3819 71183.8532 125777.9666 59376.001 61737.1724 31047.1378 41068.9941 41506.8934 35666.2877 44374.5048 121605510 PRI Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5512.5922 9531.7386 9637.5546 3746.7103 4150.7331 5281.9029 3000.9549 114773.8201 9325.1406 8600.0961 7165.1622 11882.8421 11882.8421 10288.7278 6692.3311 4628.5676 4244.8841 17085.6248 3673.8146 12736.1974 20606.3661 60196.7662 3743.5239 6262.8864 6026.0419 2783.0636 8044.5038 227377281 ara Carbon Cycling Carbon degradation Hemicellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 7790.5004 3559.9976 15690.2002 3041.8653 16066.8649 27112.2748 8264.4708 423319.2602 10504.7734 9478.377 8868.7296 5263.2337 5263.2337 8418.5414 16925.7483 156724.9055 6888.2211 16065.5076 15712.5049 7861.5196 9434.032 10161.7878 11115.7409 31101.0384 8464.1852 13511.405 5298.0247 7651.9385 14004.2413 6910.565 11084.6423 170781457 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 87042.424 43744.2548 131901.6477 41904.6157 55366.3672 18478.4432 43940.8068 26701.5728 17690.5117 25452.2561 24192.7561 22041.5154 394171.8928 19295.3531 31693.3719 179773.6976 51938.9794 51938.9794 20986.015 39996.7093 27623.216 48820.5758 28734.4666 80947.8587 16956.2781 18418.9425 79271.9521 28272.0728 179849.5434 46268.5645 39180.7098 19320.8719 36235.1221 42935.2634 18132.2751 271052.1926 371546220 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 6107.0642 5198.8388 15160.412 2245.5789 211647.4991 4082.6926 5103.1182 2248.0966 2248.0966 9002.4396 3452.1627 5212.67 2841.6854 3658.4324 5537.6314 3039.255 5844.865 255020965 ppx Phosphorus Polyphosphate degradation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 4605.4381 2122.4234 5628.1877 3735.6056 7094.9992 3276.501 4400.8215 5323.3708 2088.9471 2181.8303 4935.6631 49525077 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Candida glabrata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces; 6256.7534 8200.3749 13731.5384 4402.069 7024.1419 2956.1812 2956.1812 7000.8492 6822.3879 4522.3103 8077.9857 11171.1088 4496.7757 3599.0668 18886.0619 13727.4583 2033.3487 2968.4562 10248.1594 2441.9822 221083076 nitrilase Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 521371.3901 59039.6444 19186.9895 96943.6271 14290.3638 69059.0041 58760.569 43197.8637 145692.8378 55746.9614 108573.7845 904137.0884 72619.7078 88710.7433 113040.8535 62357.3107 62357.3107 258171.0276 154909.3166 46825.3001 76233.7851 82317.8357 219638.0728 59270.6028 74236.9462 149646.5975 176286.7653 166755.1329 120186.536 78494.9115 49057.4028 94708.5312 92845.1837 101134.3787 64417.9539 331025105 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 112490.194 31200.9695 63854.9815 146719.4527 1868440.7566 42328.999 71276.8561 121376.4011 59760.7913 99089.9255 107523.1094 85250.6926 2513046.8448 92834.0436 115277.2491 775273.3401 179891.2155 179891.2155 136026.9771 133927.5487 94114.4658 76018.2968 1428575.3125 143282.0087 71844.9027 57802.6731 150855.4207 73274.6827 276154.8208 105298.2289 303186.8436 79802.2712 109852.1703 116292.2399 128175.0891 350241.5654 219852472 dsra Sulfur sulfite reduction NA Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 8227.2428 5679.0036 9374.1511 19341.6256 4938.8725 3967.7022 3902.3945 8483.4603 15625.8554 12201.1348 4900.2228 121012.4707 8668.1262 9901.7967 10635.0372 5952.3753 5952.3753 7113.4538 19549.9236 11025.9323 10719.5753 9680.8874 11197.8891 5816.8438 7051.4196 11079.2436 6130.8525 20438.2779 13806.4661 12267.1903 9233.2726 7166.4837 7142.4166 9066.1351 594568.837 315131747 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter felis ATCC 49179 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 98114.4255 16162.5665 58922.2645 63876.7119 79524.7024 44571.2879 642985.8376 72196.6743 34412.9497 81277.4472 71800.0759 38064.1904 1698894.0326 54713.9712 80333.0769 80282.6412 43311.2065 43311.2065 41636.3494 75654.4196 57148.9861 61299.601 50917.2466 73519.4699 27785.6907 29880.4286 56720.9249 66962.2922 195122.8163 37205.482 54971.8194 30855.497 38391.4511 36806.9074 24194.0054 74867.241 332372394 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5317.3321 2126.086 2495.1205 4116.9534 7356.6563 4562.5333 4336.3044 8341.6996 34041.6419 170097187 p450aro Organic Remediation Aromatics polycyclic aromatics Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 11330.8979 13982.4628 10351.0916 14431.3726 7879.0396 8000.7589 7263.1341 11621.8726 16862.4134 6066.0004 311844.8995 21334.363 26581.6452 8928.442 5620.3279 5620.3279 10664.2429 20854.4955 12557.7923 29240.9742 42995.5343 15172.7822 6951.3382 6399.8146 15718.397 7195.0509 22047.6486 9809.9861 14898.8076 6611.8119 8004.7067 8507.0641 7384.7837 26280.859 167628548 terc Metal Homeostasis Tellurium Detoxification Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 5099.6788 6408.9024 3356.4973 3356.4973 3457.4308 6668.7048 6732.2298 9844.0687 7895.5258 7409.7679 4568.4519 3553.2709 356415284 FBPase Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 8444.4116 6776.8803 5545.5369 12067.9329 4509.8389 4559.9924 8428.7442 2655.2545 144548.543 4386.409 7169.9899 2739.1085 2739.1085 2802.5374 12730.9973 6390.4279 6294.448 9721.6206 7536.6262 20631.6601 38624.6419 6059.1365 2862.3354 12870.5458 6049.5528 9300.1131 2898.6502 3690.8742 4831.6838 4221.0383 23451.7168 291177410 axe Carbon Cycling Carbon degradation Cellulose Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 12286.1137 7325.6203 9772.3001 11894.8021 7757.3744 6079.9955 4101.3682 9239.1454 9780.8986 5455.5495 291823.5677 12347.2603 11175.5438 14723.4267 16131.0433 16131.0433 6610.0731 19793.2451 12502.6202 11732.9145 22295.6417 16620.5855 5996.4695 5108.1235 13472.2558 4332.2491 26984.0938 10031.6949 18174.0669 5492.8096 9222.4667 7165.3873 9546.4 17993.6468 62131450 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4978.9737 3125.1955 3500.0876 2539.5037 3944.3477 6192.0248 3435.4693 88457.2217 4303.7492 7102.7195 3011.1608 8922.0082 5489.2477 7536.3212 6641.1371 2483.2327 3613.1578 7478.272 12236.504 5481.2255 8504.4703 2325.1575 5398.8136 5301.8694 2591.7158 350549381 Sir Sulfur sulfite reduction NA Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 21560.7502 31187.4957 16811.3148 20382.55625 6213.5321 34301.2107 19799.07885 29289.8055 28359.0102 29404.5532 25088.454 248010.0978 17626.6589 19172.7078 29989.94155 11449.8673 11449.8673 69436.55985 38929.32795 20761.3506 32595.7323 18714.37845 13969.65985 18143.2573 19290.4469 21053.5617 42827.5149 30715.2076 24079.5993 22545.2113 17754.75065 135774.5083 23386.54515 109641914 ppx Phosphorus Polyphosphate degradation NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6696.653 16740.3779 5604.2591 5298.6739 8995.8323 4795.9975 7519.4337 5594.0005 2450.4434 10002.0282 5191.801 10887.165 3845.3252 3845.3252 4566.6471 11365.5538 9810.7651 5533.7524 8840.6311 23935.4212 6756.7683 8139.1406 12115.4775 6954.5908 22835.7572 9931.973 14262.513 4444.909 19726.1311 23615.3293 10259.904 10235.0725 261364429 ppx Phosphorus Polyphosphate degradation NA Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 10298.7405 24894.7698 3056.9244 53569.2361 5130.4345 8279.7302 4643.7229 99972.7438 7156.8968 12660.846 16780.528 8152.6355 8152.6355 4087.7233 20490.4572 18679.1172 35275.4216 17606.6473 17039.4271 3576.3999 4501.4919 9558.3836 61614.7524 42331.0351 34548.666 20736.739 7691.396 5289.5614 6865.3878 5015.1467 31291.6555 256585216 pcag Organic Remediation Aromatics Other aromatics Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 58129.0156 54427.0295 198215.8233 25304.6899 7070.5431 16352.9714 35063.688 17088.2587 20197.3777 45909.0328 41298.8245 603806.8306 28419.3278 44846.7582 35242.0857 53443.2823 53443.2823 19859.5837 90167.4718 17424.1634 154581.9043 75021.5978 57085.5524 56222.7049 23626.7937 25124.2733 87170.1676 93964.504 17521.9234 34873.0083 29821.9369 27776.3389 31159.3904 139471.8298 288232.2504 379705167 cellobiase Carbon Cycling Carbon degradation Cellulose Streptococcus infantarius subsp. infantarius CJ18 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 21039.4692 11798.2529 24147.7004 15653.6129 59138.6237 7677.1723 11396.1684 21164.6178 34760.2574 8473.5444 292729.6415 21366.2085 13617.6537 13244.5849 13805.5914 13805.5914 10199.3297 18547.6104 14821.8243 15568.7634 17355.9376 18495.179 16876.4606 17506.4464 19460.1456 11596.826 76359.4821 15135.6491 23310.8141 8400.1414 11485.9277 13616.8353 7144.3553 25891.5767 26278740 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 105473.8069 11319.7457 23474.3238 37901.1544 199174.2385 510480.9714 75842.8038 269892.7224 32672.3633 42134.0986 58480.4396 72428.3394 960957.4078 64052.169 272559.1942 72617.0567 69067.9277 69067.9277 75811.9108 122130.5039 103319.5874 67533.5799 84861.6336 67084.7859 19772.7804 15020.8801 52956.3888 32523.4903 104993.4415 60865.0899 80233.701 29278.6477 36811.5319 60268.2918 29926.6284 150390.824 408446152 nitrilase Organic Remediation Aromatics Other aromatics Bordetella bronchiseptica MO149 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 4460.2268 14337.5611 18000.8011 9918.2782 4316.7655 5006.9036 6358.8402 5913.9059 2894.3132 119393.3896 6623.2952 9670.2701 6072.5793 3765.3193 3765.3193 3630.1187 13259.5501 8380.4229 13024.0256 5079.9027 5222.1069 3676.97 4204.9023 10965.7646 3807.7556 21098.3516 13983.0515 10336.6873 9068.5723 4446.8439 8961.4693 3252.4712 380837268 mannanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. JB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4697.3336 10593.7335 2763.0207 2763.0207 5049.7499 2620.4307 1975.0143 21186.0282 4752.0726 6618.6801 1902.4821 3517.1942 4736.8385 86748074 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6416.4167 11617.038 4765.8581 8435.7567 5814.6847 9248.8091 17667.6668 113933.3162 6464.1312 7456.8021 7018.8314 19046.8978 19046.8978 2923.3117 22239.592 5993.2115 4184.0619 6094.3186 7672.9701 2633.5779 5957.1702 20566.7242 3905.2756 15693.394 5301.7145 14396.8743 3467.5544 5039.6977 9805.9486 2345.15 6001.054 374081692 amyA Carbon Cycling Carbon degradation Starch uncultured archaeon superkingdom:Archaea; 7377.6129 4019.825 3654.6908 4496.1074 6870.4028 29029.12 10045.7296 79688.8498 8792.9933 5038.3451 18262.9019 5069.5924 5069.5924 7125.6009 17938.4342 12831.0472 16608.8389 28416.8118 44271.8685 17337.5213 8217.0761 21590.1406 9128.2265 17915.7401 12704.3236 8951.1807 3393.9411 6508.2743 11900.3004 3796.1921 70509.9411 380754498 amyA Carbon Cycling Carbon degradation Starch Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 4562.3911 5210.0772 3862.2189 2770.9377 2753.0981 3985.2889 59088.3051 7163.089 4666.384 4666.384 12946.6738 5223.5026 354775.1628 7748.4943 2748.095 9595.9531 5124.8277 6749.2931 2425.5048 4625.9271 3792.385 2482.362 7228.7604 363615483 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 41363.5299 17844.6419 2719.3211 61803.1464 4594.6923 4538.3646 6690.1224 6740.9239 6740.9239 2788.8097 15218.1126 3825.0714 11137.9705 31689.8088 7482.0758 3064.3564 8456.7295 8408.348 17550.1107 30297.0733 6845.7775 2213.3038 3669.8828 5329.1397 3727.3707 15344.4846 225871773 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 14915.6012 50281.2512 290542.7637 21961.1275 15173.4451 13089.5832 266795.4916 54399.5801 18950.642 47069.2213 12354.267 519800.8261 27404.7871 41099.7688 143762.3436 24335.616 24335.616 21675.6839 29567.2362 22686.5095 91099.2695 30065.4946 17095.094 10707.1969 19226.3065 26744.157 14224.885 47050.8535 18573.0266 26738.5141 50810.85 23379.7174 18968.9302 12409.0178 21876.1757 77461488 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 51069.3901 6227.3115 16923.2308 93734.1296 29398.6561 9843.965 33439.4518 5060.9637 15827.661 16421.2831 8320.6897 256333.8705 17183.3776 17682.9187 8139.3801 12651.6873 12651.6873 9679.335 15446.1046 17690.8763 13864.9209 14141.0603 19290.8252 7533.0536 8569.466 28376.2291 6153.9196 34853.9535 12533.8753 20245.6279 7148.8438 10667.6351 14912.4857 7892.9131 32354.9707 55232184 nirk Nitrogen Denitrification NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 4301.2301 5437.6814 3568.8106 3221.4822 55944.8762 4128.2136 5228.2528 2622.9665 7695.084 3224.3707 6284.9776 9526.1508 8225.8268 2383.2941 5501.1897 2316.7574 2859.9308 3326.581 2530.7356 6244.9462 383330597 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 71036.5939 14894.0113 22896.2557 10608.003 7704.0956 40890.7178 32563.8036 11724.6124 17425.2794 8594.7198 311353.6121 13159.5212 13196.5756 9218.8255 10780.9179 10780.9179 12343.7541 46543.5042 15706.4639 27227.7464 26115.0401 201871.6398 9123.6429 10041.291 23074.5529 8022.9937 43097.3206 30167.2533 19024.3375 10409.8348 10814.4485 15647.9368 55422.752 18628.9656 374854789 fccab Sulfur Sulfide Oxidation NA uncultured Thermus/Deinococcus group bacterium superkingdom:Bacteria;phylum:Deinococcus-Thermus; 28065.8632 5367.8543 10536.2837 10319.3005 11753.299 4936.8106 7590.7593 9356.2127 8756.1112 12684.5679 159319.4045 18136.9935 12866.5941 13715.3804 17868.7474 17868.7474 6466.2369 20830.9259 49282.8435 13254.5047 22883.8189 21284.9495 5922.4865 8710.4834 16160.4968 16578.2259 39417.5222 21934.2391 41740.7512 4910.1981 10072.3589 14968.4794 4769.6882 18273.1886 84685363 mer Metal Homeostasis Mercury Detoxification Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 5335.317 220909273 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6307.4462 3451.6998 27036.6371 2279.8391 2307.6306 67315.4576 5879.7068 5519.2459 4358.6967 3508.678 11104.3838 8327.691 6438.6612 7897.0263 5124.8119 3160.0962 5471.2976 9509.3288 31230.0811 16662.018 9877.9606 11893.5259 5595.6858 3882.6775 7563.6312 6286.9457 5994.3443 57234837 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 42703.6686 358443.5287 33688.5844 11473.843 30941.3165 28329.6033 197598.3244 12772.6749 88949.0902 47880.91 47246.6052 712049.1066 81317.2421 43126.0043 101052.4133 46081.2691 46081.2691 72673.4688 76660.8418 52505.5417 41196.6788 74534.0695 42251.8351 24540.2594 35289.6931 56059.4203 154824.0449 84795.9428 77811.5315 61464.5754 33528.1378 25152.2296 42611.7103 37420.874 67426.359 386691635 terc Metal Homeostasis Tellurium Detoxification Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 479234.2008 14517.7567 2461.7423 5936.8809 4163.3526 8536.999 3919.399 4253.1481 4253.1481 7664.5794 3870.0697 2564.5639 3712.4937 5793.9601 18550.2 9063.2063 6691.947 13111.1758 2904.6796 9875.1515 15105.4987 2922.4263 6380.5882 94495093 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6821.8165 4587.17 5103.6748 6342.5983 2532.1438 3868.9736 1961.3427 5409.2116 4859.625 3166.6719 117031.8595 6117.2155 3881.0314 26075.6038 26075.6038 2532.4041 8054.4366 109269.7301 4861.8384 3873.5357 3467.7218 2931.6833 5717.0345 2797.6568 10014.4126 4980.4099 8108.9562 1944.7398 3564.9469 4415.9811 2712.412 37079.5932 189499412 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 49653.9879 21738.251 21827.0888 21682.0076 13954.1761 7238.3437 21585.7487 49881.7302 19503.1765 30583.8626 41826.9986 26361.0537 666970.7609 40613.9123 50303.8822 42388.6252 41470.1578 41470.1578 26934.7238 47212.5998 47208.4619 45517.1704 52457.3309 24748.9885 21052.0824 32707.4173 62001.197 35122.0804 57968.5786 78053.7026 59532.5828 42007.6282 46786.7004 39258.0307 46703.1574 40365.6884 384465101 urec Nitrogen Ammonification NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 162705.6934 10486.6134 79088.3239 953869.5981 175606.8965 27086.3433 51287.8125 106023.9076 77674.2316 86925.7788 101124.2118 166001.7677 8418368.4337 184638.8722 357945.7136 281283.5065 382604.0988 382604.0988 83574.7782 184366.0561 82941.1571 132672.4661 195955.1368 145538.847 96201.9796 83206.0861 137104.1766 97384.9848 383734.5956 124083.0066 371853.7686 132760.5834 92591.5788 205202.3537 93795.2293 656164.2294 51491426 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3995.2791 6465.2732 24237.2916 7214.1151 3248.7922 19353.4787 3885.7711 4897.8251 5825.3065 3454.7473 29407.5283 4401.5835 9895.7957 5393.3579 10570.0784 4172.8911 10935.8031 11330.7763 10097.3157 49550.291 7009.8445 30772.717 6488.2891 15104.7719 4255.1133 7318.3573 115424239 gdh Nitrogen Ammonification NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 3907.5422 7385.1367 13288.1489 15909.3963 4071.3053 5334.4441 5314.0942 3661.7757 7189.8347 5784.5658 133557.1068 6497.4312 7763.9897 13680.3614 7498.7303 7498.7303 4495.2482 7638.8114 330417.9238 10057.0473 8436.2236 5262.5203 6464.6739 12270.4433 8865.9762 11273.8982 17306.11 15187.527 21459.7207 5844.3003 3701.2232 13025.4339 4955.7436 334887631 cmci Organic Remediation Aromatics Other aromatics Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 17692.4482 70618.6865 8453.5881 51717.5162 33577.815 64138.2355 13071.5773 12695.2538 6561.616 10315.8061 6456.1251 321253.436 62386.4483 20838.5786 52960.5465 19198.0009 19198.0009 6399.3672 12102.1568 17092.7494 9998.595 17639.1526 7161.7252 5566.3337 11764.8078 31069.2987 11253.1085 22907.139 34058.9273 21668.2272 10770.1049 14083.5776 10180.0802 11926.071 14554.5525 72162424 terc Metal Homeostasis Tellurium Detoxification Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 12222.1885 18829.8486 12906.1631 10051.4464 14497.0334 4576.1106 2810.9269 8536.0796 20621.0364 4625.0883 4359.0822 11814.2497 9816.6732 8373.2995 5733.3082 5733.3082 13843.0416 20122.9173 15335.7014 13955.5703 21471.8454 17337.3673 5693.6327 8065.4289 15143.8646 13634.5149 29363.2101 16789.4858 20840.4249 6220.3819 10857.729 12276.0581 14966.3443 16820.8432 398206251 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9958.1705 11418.9412 28160.8361 27155.3018 13150.7398 19431.2222 5709.4004 8097.8099 7261.1123 7770.9734 15684.4099 8032.6826 235293.6455 11171.8706 9665.8711 16134.6609 5222.5042 5222.5042 6986.6174 12846.2365 9116.065 7462.5538 8099.5131 12839.2255 4727.8578 4193.1364 13761.4696 3825.65 17220.6149 8957.2297 13089.6093 5745.1514 7657.2368 7790.6774 5130.8756 18578.329 302524889 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4228.4747 5800.0701 9187.1775 152980899 aln Organic Remediation Others NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 5387.4267 2142.7799 6436.0544 2691.1066 6288.8827 7342.9851 2533.887 97634.4581 3809.2836 5638.4393 3530.557 3530.557 3576.6574 10327.2556 4694.332 6610.9942 6059.7877 6637.0077 2745.9229 3062.5793 7073.8863 4363.4024 10702.2725 8379.0422 3975.2631 10689.4586 5577.67 3704.8776 18154.9664 283488056 hao Nitrogen Nitrification NA Methylomonas sp. 16a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 11861.8958 11551.519 11025.9781 11653.6799 6351.6624 5712.7671 14833.9209 12344.9129 13643.3514 5517.1687 247730.1391 9945.6252 9574.3513 10871.4883 5338.5396 5338.5396 8177.8349 27256.2792 9986.5739 8547.171 15645.3567 16968.0254 8281.9087 8342.8899 15386.8053 16718.7693 50048.4463 15550.4007 16352.5505 5716.373 31584.7887 8673.4139 9263.5447 15786.5441 347539559 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudogulbenkiania sp. NH8B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 103537.2511 82352.3086 117725.8315 132223.1261 92799.2324 45199.4433 97797.2108 216238.6733 53658.2457 68313.2388 98010.9949 59367.2301 1977289.4431 81129.8176 178758.4999 526396.8012 79232.7003 79232.7003 61563.285 146447.6333 72580.9782 317536.4759 146029.2812 230007.2631 175176.0426 63972.5336 103502.2789 80626.664 201315.5255 286109.222 157497.3915 59333.7998 75091.9653 67056.6089 47642.5127 130003.9324 115401562 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 130281.1607 50124.1099 72325.2424 346285.05 116762.2828 70459.0915 50274.4625 209036.8766 39429.9074 83827.2813 75292.4361 46817.5837 2386797.7408 123581.7464 134712.1096 81787.8154 51878.2661 51878.2661 80513.9278 117332.6543 75360.7316 86762.9172 102594.6423 148874.2179 47583.5219 62595.8292 70408.3591 34706.6987 131639.2715 28343.0052 104335.1771 60835.4938 54455.7599 54478.8771 48783.6819 146612.081 221636260 dehh109 Organic Remediation Chlorinated solvents NA Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 26903.2191 6031.3517 5032.878 17648.727 5823.6753 8868.7047 5216.2668 7662.2834 12095.7465 6392.6021 100731.4267 8076.7404 9693.3325 6552.4351 11020.6752 11020.6752 42949.0786 14478.797 12283.7129 14902.9295 27821.1484 14807.8817 8545.633 6646.8079 13919.0198 11618.0972 25545.6389 12625.1815 14965.0424 10632.6799 32499.1107 15975.4775 4076.6786 10035.0688 73762838 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26432.5266 9006.4468 7251.1868 14040.7991 5202.1998 15338.9846 13167.2635 15188.285 13809.1173 19368.8814 15102.2989 232856.3039 15217.3295 32999.5693 12519.2055 9340.0011 9340.0011 16742.5529 24674.8059 24956.5704 22355.54 26588.6425 18781.4602 12232.4156 9322.8569 19385.3091 12059.9244 36311.7555 35596.0802 29015.3091 10426.9702 16002.8901 19251.6845 13746.7653 24214.7237 238762707 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 39120.3727 18031.6284 63859.1651 33025.201 29302.9501 5330.9138 33150.036 31957.7138 265292.8369 107813.7531 42796.9715 52566.5365 538922.8201 111463.9556 33836.59 33732.3064 33121.9914 33121.9914 48742.364 59747.5544 64389.2967 72565.0034 50145.0589 49349.5996 77924.5745 57578.083 31135.2487 24522.0147 78554.2793 41619.3808 36514.202 63354.8884 38836.077 37661.1074 30005.9624 40164.4742 108765835 badh Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 44506.6391 10657.252 12647.7091 191865.2644 8696.2613 22064.7608 56013.7925 5842.8157 16538.625 30571.981 23852.5107 360796.3304 58505.8856 36949.4836 14904.3574 18945.6537 18945.6537 11063.1854 47331.5592 23429.3764 29898.9413 492596.9773 37630.7418 29536.5857 14334.9152 19998.0743 23308.7114 76464.2235 20421.1218 28676.7106 17784.4421 17385.0482 30823.2065 12733.049 34586.4691 345001640 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 41521.5676 11700.9928 6861.5367 23802.7992 15485.1943 12703.8442 41469.3811 20186.7701 16773.6935 23473.8206 19995.143 251275.6825 26170.1765 23486.9378 163519.1081 25594.6885 25594.6885 11392.4581 41071.2263 19769.6869 27066.7995 97119.6664 23148.5333 117198.0184 21530.6849 23669.9571 21018.5253 72138.0396 82065.6912 69668.5707 24818.6977 19396.0205 36259.0515 194392.6422 22652.301 123441473 arsc Metal Homeostasis Arsenic Detoxification Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 15024.1243 7041.4573 4220.3636 3565.139 8076.2854 43135.9417 13349.9993 6948.4563 6258399.2817 5196.6815 6126.4978 3291.5559 3291.5559 3796.5605 109099.1823 8936.4254 7430.8221 5160.45 6348.5313 3182.5962 4933.8365 6817.1489 2842.1251 33451.247 6018.0487 7780.8334 6829.425 4925.7961 5751.6284 4725.5205 7975.5591 88643126 dsrB Sulfur sulfite reduction NA uncultured prokaryote 24063.405 14164.8857 13207.6398 17332.6678 20455.8923 17567.5438 14043.3707 20492.2562 22065.2622 13626.3944 380010.8599 22883.5238 26141.2678 26232.0285 13689.944 13689.944 29204.8859 33414.3661 20368.8772 24187.9825 26329.6079 28838.8845 11449.7853 11676.329 26850.0118 18566.0075 80701.2832 20669.3337 28044.1238 14234.9484 14905.6424 21729.8241 47597.233 30489.9257 339287765 sqr Sulfur Sulfide Oxidation NA Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 4317.5223 2544.5225 3674.7054 4414.3778 4719.2868 2613.7319 5174.2259 259454984 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus fumigatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya; 7331.9292 40059.3979 23318.2544 10260.192 6735.3841 8011.3892 10479.4795 7994.2405 12085.1543 12103.9462 172809.6938 9415.2165 10125.0791 12747.0872 4744.6899 4744.6899 5976.9748 20084.915 18228.8996 15264.7734 12820.773 12807.7854 7684.136 5958.7705 14621.2686 7676.5689 30860.8358 13323.6717 16601.6905 7848.7113 8171.0178 14602.0493 10703.6667 12350.2506 25028538 gdh Nitrogen Ammonification NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 21237.3511 10606.85 92632.5515 54208.7072 18064.4717 15995.596 28424.8203 34092.7692 26948.5876 54866.1908 315594.9429 16643.86 15506.7455 29101.2847 33429.4256 33429.4256 25739.2453 214919.9181 19825.9564 56824.9089 65898.9415 17457.9269 52297.0895 23814.7795 30023.3287 74107.7422 63494.7035 61258.3664 40955.5893 12859.7537 38813.9179 65560.3744 12956.2298 34344.469 323365284 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 9043.6161 7341.6565 22198.2031 6939.0699 6155.2045 4518.0647 6532.7912 5640.7977 15754.2118 152016.7136 10559.0335 27660.6334 9090.8581 4673.6067 4673.6067 10971.4116 16311.8209 11121.7496 4609.7946 12426.8794 24759.1653 7799.2573 9175.4676 12668.1318 6954.0056 21324.7259 8580.2351 10776.9273 5297.2231 9030.8079 7220.7738 11942.4743 14744.9829 359356215 TIM Carbon Cycling Carbon fixation Calvin cycle Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 4084.6632 5693.3319 17659.0956 7563.5597 7563.5597 9360.2321 4998.7932 4968.431 55377139 amyA Carbon Cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 38545.793 38103.3598 9397.6715 25901.4691 55682.3711 9884.795 17720.9136 74644.1505 19869.6942 9346.3407 597786.3089 19190.3593 50137.2314 26100.5866 9121.9205 9121.9205 9295.8226 31877.6616 15474.2262 27477.0505 32698.832 16852.2348 31069.8467 17846.8667 16256.9735 12729.9571 34060.8978 24070.0536 63245.5992 8823.9072 16260.5488 24917.7531 19436.8387 17978.9876 302686798 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4186.6725 1037809.1795 5416.7631 3487.4119 5273.0756 3824.4086 7996.5182 2167.6922 2167.6922 8175.7094 4338.1442 8117.0413 2822.1956 3845.354 5344.3727 14572.964 5732.5006 7977.9395 3172.8574 3396.8352 2713.7882 39962604 amyA Carbon Cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 93997.9288 22998.6906 39767.8171 56313.5735 58209.314 235518.0373 59459.6112 71455.6989 44382.6337 79202.0985 55593.9003 65791.7264 1420724.0299 73378.6002 78856.1356 58374.8483 44768.9016 44768.9016 80789.3958 73405.8033 56942.4276 74852.8346 323493.1353 98003.6614 102884.4007 37259.6103 70845.1155 33436.7117 151346.5285 66699.9133 75946.4912 42033.1661 69193.8541 65691.4803 39798.2602 70654.7977 197103534 sqr Sulfur Sulfide Oxidation NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 30188.8355 354624.6173 10295.5288 13778.4691 20187.8153 30824.5471 9304.7323 57238.2138 31352.3659 29595.1053 2942698.7009 89774.944 21780.1749 46861.8866 25802.13 25802.13 22947.8638 24078.1567 11114.7329 15734.1921 42858.5949 28300.9473 28079.5723 26403.4047 39474.2805 32897.2915 46937.2737 25376.8185 152925.887 16743.107 25425.7884 41749.6998 55775.257 67642.4359 353188014 terc Metal Homeostasis Tellurium Detoxification Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4341.4378 10807.9027 7739.7286 3472.3541 2988.1119 2988.1119 2563.9841 6093.948 2948.2612 324033566 atza Organic Remediation Herbicides related compound NA Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 34787.2744 9581.4299 30253.6125 474830.4908 18226.9106 8290.5416 11296.2843 7037.7159 17323.1952 15946.3077 17083.4068 241565.953 14498.1042 16363.6113 7510.69 14968.8791 14968.8791 14281.4949 43393.3717 18309.1333 32338.3587 16599.2934 49732.1292 7474.3201 15283.6361 24973.2319 9595.84 97355.0544 47630.8799 65186.1371 8383.8492 14101.1105 13925.6962 75489.3251 53632.7689 222454802 arsc Metal Homeostasis Arsenic Detoxification Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 8274.8483 13308.1626 7527.1621 2403.3614 2731.1771 2248.5995 4363.8158 8207.656 2794.2828 136757.197 9017.9766 6161.8149 9862.2413 4272.1675 4272.1675 6126.0308 14202.967 9244.7768 9683.3167 10820.7816 7007.7626 6369.6075 5676.1944 14279.0774 4288.4868 21664.0855 10606.3478 12584.9295 5625.1891 5826.9424 10933.1795 5110.6249 6614.1431 25045816 cpnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. 789 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 13250.8968 5888.7391 5369.0317 9552.4135 6238.5922 4212.7742 2407.8023 10093.6753 12753.309 7341.2908 205845.1231 11530.6225 10235.3381 23403.4676 5081.06 5081.06 6502.3514 16923.9153 8575.7974 9366.2618 16548.1223 24844.7825 6181.461 9999.1724 13362.651 8381.0887 18843.9198 9315.9634 10763.1077 6516.8376 6711.8416 9522.6551 7440.8063 13619.3015 124266088 chnb Organic Remediation Other Hydrocarbons NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 12027.1403 31271.3622 63729.339 5179.7135 14141.6712 6616.2981 3559.9563 4351.7879 4749.8149 5681.9753 16942.4981 11799.0272 128148.6677 8700.121 8304.0339 5790.5004 7717.3542 7717.3542 10034.6282 24528.1329 6745.8445 8748.5056 7199.4405 6874.5003 4826.8557 7148.0225 16654.1669 3305.323 11092.2849 16499.4973 30548.1402 4535.6423 5923.3251 8442.7965 2975.3239 92743.3535 375160248 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 7130.6575 4471.1141 5876.959 98887.5808 3397.3724 5730.3291 2309.7475 2309.7475 6180.857 4676.0548 6213.1898 5524.7015 6869.5846 3048.1329 3742.4451 2964.2401 147847969 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 15199.3032 2622.1246 7604.4566 2589.2355 78942.7857 11143.256 12805.9573 829062.6823 14025.9084 24771.4911 12436.5885 5674.1378 5674.1378 5788.5248 17335.0256 10153.1682 6531.9832 11786.4884 10111.3934 6374.6514 14212.4404 4198.0638 15378.3152 136630.5129 14862.2627 5571.8235 5689.6476 6789.7479 6476.5829 10451.9606 329893946 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 14965.8695 25160.9393 8076.5681 12090.5906 41093.7852 15163.8307 35126.859 12399.8776 13777.9457 22261.2931 508588.4117 17182.8798 15406.0359 22740.9374 21573.8571 21573.8571 8901.2673 33523.0693 14631.8931 17207.3082 24268.7156 25528.8136 12016.9336 19978.9678 13203.9114 12824.257 61875.1367 15052.2403 23916.267 10719.3133 43738.1083 15763.0318 13125.051 85753.543 117578637 amyA Carbon Cycling Carbon degradation Starch Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 13071.0198 4308.9248 5808.2605 85487.135 6160.8094 3992.0318 22291.906 225194107 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9619.2909 5604.7484 12332.3345 3048.2075 6244.9668 5162.0548 5752.3588 261931.2492 4379.881 4637.6279 4894.5113 5544.4026 5544.4026 4434.0516 12140.7436 5762.7315 12956.8812 10256.9269 8948.6651 13628.845 5646.9858 6267.5469 3483.1067 4965.1067 6626.6486 11960.3969 17220.1877 6146.4971 8050.9604 2656.1728 13902.1119 357008242 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 4582.054 3177.3604 2363.4492 4874.2947 4091.3243 3234.4451 3513.6494 2528.1531 8026.9481 6132.886 8189.6622 2519.8434 6552.7606 10751.2744 6478.3779 34119.7387 5288.1938 5547.047 2512.9467 3609.0904 2108.9274 6267.2764 212714444 pula Carbon Cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 6920.3775 12564.618 5785.2964 11899.1999 17082.3111 3199.1082 4730.5511 95402.3606 5448.7475 9153.2111 3270.0675 183379.1118 6048.457 8351.1157 4218.9 4218.9 2777.1982 8923.98 6516.0989 4294.8936 21135.5104 11307.7071 11672.9027 4145.3094 5435.2002 3957.4405 20432.1921 9431.7521 6191.5853 5352.7707 5536.8111 4603.3472 4732.1154 99030551 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 84247.2285 14851.0372 127064.4488 11784.4071 48069.0759 10141.0409 24102.4379 29798.2789 128682.4247 32890.0926 60802.0461 61744.3817 5130697.9031 29234.0247 51600.8867 180450.7062 49740.2189 49740.2189 31288.6665 54049.6541 79209.4165 21102.5235 86492.897 47006.4209 41933.8941 47653.9354 35421.7532 37604.1869 100598.431 38372.6427 41212.968 18018.2859 63048.642 32821.4573 35749.3255 105771.9497 39420 cda Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4173.3399 11523.9211 11462.3049 20172.0555 3336.5631 6123.7458 4068.6412 5849.0529 3737.9265 10311.8104 159950.5027 4351.4045 4371.1887 5442.9919 1856.7612 3470.4304 95303.2273 2467.0309 407256802 alkk Organic Remediation Others NA Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 4849.4791 7911.7038 9786.8308 4827.031 3365.7512 3696.2298 5024.3905 4473.0913 89583.9739 5793.5217 6479.6122 4606.9145 10396.9174 5736.9236 4327.169 7413.3746 5713.3131 2931.3687 8764.3219 2652.6077 13740.0658 5350.3288 8086.4658 2931.4991 5678.7785 5089.0739 2906.0681 12403.3888 260223144 TIM Carbon Cycling Carbon fixation Calvin cycle Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 8097.1725 36172.4978 10639.6515 70220.9427 4496.2867 2839.2472 5880.5383 4100.0344 76801.7224 119221.375 3999.7624 11872.2308 4836.4514 4836.4514 3882.5632 8415.0966 5790.3671 345515.7771 8471.8838 8282.8047 2574.9712 3737.8677 8911.849 4568.1251 16737.4737 3870.9672 9397.538 6034.8259 3701.4664 5833.7649 3868.7393 8560.4589 114192360 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 49873.774 15466.2395 12386.8037 87891.5679 148100.0512 11883.2383 31856.6709 172886.4727 35961.1559 88706.6263 113312.952 113076.9619 2507121.4017 106312.2092 361807.0814 55272.2892 82158.6604 82158.6604 82186.1069 125858.5066 99059.4398 67313.7806 81263.9981 28379.7288 27878.0757 120703.5096 115547.4056 85740.9805 140926.1087 205715.3967 141971.1776 143109.6479 243733.7983 281535.5215 53613.111 151681.6505 6689528 metc Metal Homeostasis Mercury Detoxification Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 9737.3409 24490.8495 5305.2984 5271.0938 7694.2859 2153.9291 2971.6583 8169.0893 6721.949 117739.368 11082.7531 7208.0439 7060.3495 10306.1492 10306.1492 2996.6327 11459.9895 10153.9811 10014.7748 15926.6616 12690.1341 10530.0866 14496.3894 7583.8519 4904.7199 16057.4681 6984.356 13581.4303 18812.5474 5840.3047 10902.6948 4321.6309 40228.8516 257450339 ppx Phosphorus Polyphosphate degradation NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6330.2888 7978.407 22667.7723 3680.0257 5852.6027 2920.0067 6930.7941 6257.1061 4090.8431 155608.5131 7145.4542 7453.2239 4659.2773 3413.4464 3413.4464 6105.8599 12548.1348 9510.938 6400.8901 14948.5331 6782.0371 3187.2414 4350.1064 11898.3134 3565.3335 16903.442 4511.8222 11980.8222 5045.34 6301.2362 5576.2655 4680.9251 10807.5896 328843106 RgaE Carbon Cycling Carbon degradation Pectin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 15192.3845 357391.6408 41901.1204 12674.3326 2888.0587 9155.8624 19728.9606 15251.6807 124077.4224 55999.5063 78563.3192 30753.7374 43139.6972 43139.6972 4360.83 13407.2474 10013.8466 9732.7377 24359.5891 19718.7636 15197.4269 4954.109 10732.3621 7451.3638 32342.831 11601.1727 41551.7418 8170.5122 15345.6984 11218.0336 7705.664 17937.1147 78042742 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 12247.5884 5156.1215 6782.8502 6981.7242 2473.8361 17316.5494 9708.9046 270333258 pme Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 45703.7245 10662.2825 20534.0999 8843.6351 25721.6716 12933.3975 15615.8393 12412.3227 24962.6451 10474.8244 33344.1336 20633.3764 368518.6666 15289.6396 31055.1243 25464.7114 13859.6972 13859.6972 9755.5133 35919.4905 18021.6255 114931.9291 34562.3368 21653.6576 12537.4815 12288.7876 23995.7741 10099.3893 51772.7744 38305.1115 25462.8609 9697.218 13950.5204 24955.6598 14218.0622 44253.0615 212537097 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 5228.1563 11889.9101 4637.6385 5044.9684 4379.5845 75090.9573 12659.9946 12659.9946 7359.2259 7535.4406 6841.6188 6500.1529 3103.0083 6545.8186 10577.8407 6573.896 6275.8887 2017.7666 4116.5073 4534.6256 4309.6431 5274.6471 256729734 mer Metal Homeostasis Mercury Detoxification Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 34036.7083 12198.6181 24798.9429 28720.0384 14244.9931 7522.494 9254.2211 29822.7236 12941.5625 17621.2972 7452.3387 371265.0597 14079.8553 21494.3139 13574.36 7442.2274 7442.2274 11877.357 27581.7671 15863.9274 15943.6743 31491.905 27172.7358 10757.0155 11295.966 31971.135 7280.5245 35500.5899 14398.7702 16601.2131 10634.3259 10949.9737 13871.3382 9109.1227 33084.8634 56798377 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4235.6172 17584.4063 5276.777 4379.5317 3531.7177 7463.147 5667.6176 11286.183 71749.5795 4578.7378 4570.5539 6005.7505 3749.0157 3749.0157 7757.9953 5435.1235 5080.3143 3805.1218 3702.2288 5067.0236 3740.9202 5972.969 3748.4478 3426.759 3402.5184 85709358 ppx Phosphorus Polyphosphate degradation NA Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8673.1183 7373.0902 8191.3183 5352.9994 4259.5423 5908.2728 2646.2028 10011.8526 10024.8204 9257.6003 192745.988 17181.7019 6707.6965 8773.3908 2863.6387 2863.6387 6166.5701 19135.4025 12443.186 10579.1452 54671.9424 7108.3803 4553.6629 7594.1288 12349.0489 3142.5701 20665.2541 13560.3225 11578.4538 3583.3992 6205.7745 8003.2452 3888.0209 12557.8659 83749300 dehh Organic Remediation Chlorinated solvents NA Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 5967.3851 17360.4194 2716.8708 7685.5011 7924.5511 4786.8689 5921.5551 5973.92 104462.85 5755.8098 15251.9175 8302.6911 3031.1344 3031.1344 5655.5105 7859.5817 8407.1595 10722.8553 8534.7842 6047.4564 5063.1633 5845.4654 11647.4931 8699.1431 13974.376 12127.9415 14976.8706 6865.303 5133.3308 10237.1196 5035.641 320094149 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 44216.1971 88309.6756 19584.0358 15130.4099 7860.9047 6460.4055 46301.1474 13558.7239 50484.282 49845.2514 52899.554 1704766.0963 55028.3476 79301.0799 67854.3726 80461.7085 80461.7085 41469.718 239918.2923 29069.5002 413413.8944 105488.1101 36578.7241 29568.422 31529.3079 45222.6494 23674.5964 110778.3382 49534.7668 59967.5515 17450.7993 35788.6285 46573.9595 14999.4978 133980.3033 78093566 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5005.0466 5540.2548 93883.1014 31739.0973 51092.2525 6025.8645 3735.0337 9770.509 8983.6733 3911.6557 15161.7186 10997.6243 10997.6243 6313.3062 174396.3446 8248.2328 5099.0219 185496.4388 2434.9391 5423.8924 4432.4702 12457.5341 5106.4471 10917.8012 19422.6919 11161.6713 5767.4231 126437893 linb Organic Remediation Pesticides related compound NA Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 18946.457 14617.6618 11365.103 7872.122 5139.6408 10482.2148 11312.2039 9740.2768 14721.3249 15484.0032 9281.7474 392442.4647 19929.8803 14564.1894 11424.8874 11920.221 11920.221 10012.6735 20228.7529 20684.6188 19645.7458 37666.807 21639.2177 10002.4082 13509.8205 19938.0053 9590.0918 40932.1842 14119.9979 18322.8031 7978.7474 10334.4587 13638.7364 9344.375 23897.4201 67903834 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 88249.2879 22932.4182 37642.8977 43522.4718 28032.8766 46162.5237 59464.0111 48382.7256 55922.4015 994031.1265 83948.5814 213547.4754 139735.2238 139735.2238 59354.5977 135737.8842 56470.6182 43687.666 90027.4187 84451.3365 71787.3204 57540.1105 123084.2531 39104.7378 56703.403 97279.0217 30276.9962 43380.0985 77552.2564 35560.2169 84596.4386 222354048 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 10308.0276 6580.7437 4791.8546 6626.2613 5117.0484 2071.2524 7404.3009 5647.5537 4387.2946 161294.2585 11336.8531 34233.2012 7204.3272 7641.3297 7641.3297 6679.9118 12182.5318 7772.7437 10051.3552 13463.674 11583.3385 6734.6398 5526.4924 10769.5662 4446.6299 16389.6405 6010.3523 9799.5225 5311.3308 5493.3609 6555.046 4223.6427 13045.6148 332525130 arsm Metal Homeostasis Arsenic Detoxification Rubrivivax benzoatilyticus JA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 24912.8788 8558.2055 58850.8917 70308.2162 7563.0966 30036.5858 24974.6639 22086.1919 20754.668 24072.6776 157547.6419 370130.3226 21043.421 24379.836 35004.3899 15058.0615 15058.0615 176572.5562 45769.8519 18691.3953 45718.6823 18460.4428 16988.7654 40093.4592 16129.4283 22500.3137 37053.229 28388.1024 12640.8357 40664.1905 12085.0683 53455.2915 14522.7813 15515.7464 37703.8828 407428084 nosz Nitrogen Denitrification NA Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 37811.3677 12626.2786 16773.9144 21933.564 57490.8227 13026.3346 29169.8149 34337.2726 21618.5374 14711.2838 62987.8922 51054.6005 544472.8362 55336.5764 40030.1598 41590.6953 27680.4203 27680.4203 18140.5968 47239.6565 21620.5594 17944.2978 35599.024 47879.3805 12111.9699 14558.666 26500.1887 19115.8653 65429.5102 18231.14 23359.607 12730.422 18964.679 46235.0915 26230.7807 29764.3938 378404675 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 289809.2187 120545.7034 136847.4741 61047.7228 101755.3505 15679.7194 66928.5915 91370.2016 59805.1496 68797.5739 73325.2361 41520.6809 1426885.2803 84418.9692 101434.7024 82408.5969 104112.0324 104112.0324 44435.2786 81876.0305 68605.653 420942.1974 74854.3863 101858.135 48979.3101 44563.0446 66157.0142 44672.7783 228904.4031 40811.3682 76826.2983 37902.0144 53928.2546 70283.9653 36710.6178 114860.3392 400286665 B_lactamase_A Virulence Antibiotic resistance Degradation Psychrobacter sp. PAMC 21119 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6145.827 4013.5168 3950.3341 3984.4963 3945.8151 4825.0249 2505.1979 75786.3267 3713.5313 5612.3641 2619.2178 2619.2178 7298.4758 5063.2971 5371.2192 7004.1944 5337.2237 3683.3881 5675.4291 2293.4438 10334.347 6538.2622 5642.2585 1856.976 4556.5431 3795.0014 2450.5789 6407.8531 67541943 rgl Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8557.4444 9250.4016 14084.197 14127.8248 76095.628 2879.37586667 5304.8819 11846.88213333 128019.22085 3832.4267 4856.643 6314.94675 6314.94675 3655.7868 8519.9969 6052.1777 33976.3123 7478.33316667 5040.76405 2591.11245 3888.46176667 6737.17435 13944.124 7242.1809 6352.8568 3375.84795 3759.84225 5740.33323333 5912.68555 6691.02943333 195945012 nfsb_2 Organic Remediation Aromatics Nitoaromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 141116.3154 3609124.3099 1018512.8476 289900.0501 31658.7016 94283.8676 31757.0572 66446.6233 301118.7527 104484.266 167142.8465 204451.4759 1874265.6693 64876.4239 176688.0413 56087.9213 131978.7098 131978.7098 184745.189 123469.8201 81577.4462 145754.3431 356116.7078 169906.9505 200420.7784 72779.9458 57897.7801 53849.1261 328523.2411 59248.168 213722.6863 242557.6473 139194.9398 90064.2555 47749.6194 482553.6686 146195550 napa Nitrogen Dissimilatory N reduction NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 323576.4435 17502.7327 17957.9633 57515.7005 34329.3021 28979.3064 58371.0207 25800.5464 30985.7816 40038.3295 42245.7138 1925988.5129 71395.9243 41480.0448 85855.7361 39564.4507 39564.4507 58362.8626 171323.9523 162992.6515 31766.0897 66469.0087 24532.0216 24814.4455 50564.8061 80402.1014 81205.9252 89133.4243 348125.3402 59916.429 27691.0047 60251.8661 59716.2683 72675.6904 31617.6241 257056700 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 990145.7266 558986.8995 174369.5851 68724.2408 52379.5812 16936.4532 38463.7254 274835.1503 70961.1122 79535.871 120421.3012 110786.6212 2717804.6423 95411.1317 112592.8324 103534.9692 166792.1438 166792.1438 93582.8468 301045.1031 85340.4531 272271.4842 224459.1113 139680.3905 104704.1459 120213.6525 110135.347 100294.698 253018.1494 101186.9232 352715.7926 49655.1588 89036.6973 186751.5949 137953.9698 120064.6164 333604378 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 55546.0879 15145.5071 43265.2467 581779.055 21106.5126 14547.4533 11933.1527 21158.9151 26849.1794 15310.683 560741.8029 28785.3841 28168.9325 20632.1372 20413.0014 20413.0014 17602.9577 21075.9693 13721.3329 28383.6222 34435.2076 36203.7971 7707.587 18927.8712 29652.0938 13785.0386 43527.6509 25659.029 31640.3975 12472.2988 16406.7737 19404.5632 11178.0395 26155.9038 85373522 linb Organic Remediation Pesticides related compound NA Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 28638.0282 16597.4997 29804.7879 28740.0746 14711.6347 16218.0637 22401.0554 15902.5437 152225.8996 41509.8813 34386.8471 801619.7957 30585.4444 32783.03 31388.4214 29357.492 29357.492 20244.277 47139.3823 28469.7105 31030.2925 39644.794 68047.5802 17670.6661 23541.8277 41822.0064 33599.5394 68707.2663 53704.828 41429.6313 91052.9956 30671.4443 47781.5831 29507.0057 58845.7398 289174769 nfsb_2 Organic Remediation Aromatics Nitoaromatics Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 8363.4462 20405.0148 33503.2683 7147.7305 7378.5739 4512.4398 2997.5292 8437.0553 16701.9241 9422.325 144468.8142 10444.9362 13732.3736 19921.2159 13453.4959 13453.4959 5766.2058 15205.4476 12168.1836 11220.6803 10898.2352 29096.8076 4206.9246 8550.4078 16267.3573 8474.2383 18530.2426 15257.6753 17513.4817 7752.6474 6519.6065 8948.648 11065.3164 7310.539 338782684 alginase Carbon Cycling Carbon degradation Alginate Achromobacter xylosoxidans AXX-A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 4475.4294 15133.055 17223.4308 3396.1752 4280.0125 2821.798 366298.6641 4894.8201 6409.716 9781.4167 2303.8668 2303.8668 42873.7563 13383.6719 7127.2944 3411.3032 6301.5895 2770.3441 10638.1184 4519.0912 22775.9498 39061.9759 6348.834 4204.2448 333996184 linc Organic Remediation Pesticides related compound NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 8768.0951 7551.8914 5108.7075 12482.6458 35987.1154 20151.3335 3763.3691 5760.8428 10722.9881 7672.8658 152140.0094 8343.216 8028.7868 9139.7376 7884.5308 7884.5308 5159.3804 20751.3912 13858.126 38308.9857 10739.4467 6104.8309 4645.9723 5165.4881 11071.3806 8682.2731 16869.886 15198.0943 14472.4442 4519.5599 7771.3185 9531.964 3820.5592 8993.7235 37925835 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 73778.2728 12620.7303 24651.8625 36146.6336 84452.0095 25371.9156 460695.2834 30123.7116 32833.2939 49448.3976 49783.8835 58636.0822 1033953.4737 61885.3295 34463.5097 60320.6693 41836.1514 41836.1514 113336.7806 55108.8352 41491.0254 34494.5853 51167.4933 46274.1035 44545.4492 37404.2209 70375.3347 26959.8511 122602.658 71870.5316 60301.8148 25234.445 42299.8651 41762.3803 58116.1755 81164.0744 309812290 nirb Nitrogen Assimilatory N reduction NA Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 5063.3603 21346.2636 4421.8239 3103.9414 7789.7102 6707.0383 3092.7383 17144.257 7587.3853 84539.3453 12504.4044 6694.1096 13686.603 4153.3123 4153.3123 4755.7244 12187.8121 10719.5149 6860.2079 12951.4121 3739.352 21529.933 9292.414 6331.97 6030.9544 12390.611 14143.2313 9779.1205 5527.8561 5594.1016 11869.6998 6241.6109 11699.8178 145702239 4hbcd Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 5350.2761 5334.6974 6777.9004 6186.5276 3247.095 104645.4003 8657.8893 6310.3732 1887.1347 1887.1347 6262.079 16686.3769 7449.7768 8168.5848 10096.4015 13013.8845 5670.5397 4471.1106 11348.7561 3144.0766 18662.8401 5155.436 11595.2809 4431.7842 7003.6434 6004.0217 4511.5321 12485.3004 112463007 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5404.3305 6583.7596 10256.2823 7470.3193 7234.1878 4034.6804 75094.4487 6767.9387 3713.6988 8865.6595 11279.5655 3304.9475 7885.4165 6658.4017 2026.314 10157.3717 3073.6984 6717.7341 320169324 gdh Nitrogen Ammonification NA Capsaspora owczarzaki ATCC 30864 superkingdom:Eukaryota;class:Ichthyosporea;genus:Capsaspora;species:Capsaspora owczarzaki; 5167.8104 18624.7047 83874.3229 21647.2618 4505.7484 3618.4535 15918.2991 8581.6031 6657.2265 8468.2946 131982.5209 7088.6496 16514.0033 4693.0381 7948.0703 7948.0703 13072.9304 6320.9578 3963.7341 5026.2402 3414.3875 10623.9355 28048.9228 7500.7767 8319.3888 8303.6399 14939.8155 4654.6268 8996.158 10711.8175 2235.6751 359734746 phn Organic Remediation Herbicides related compound NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 19172.3202 41682.9971 5464.2707 2959.8326 4221.9472 4020.1428 6746.6283 6746.6283 9109.1179 5334.843 7891.0445 4858.1746 7676.5932 5062.0505 2806.0224 26617.2559 30232.1874 1816.498 6785.8247 5306.9846 14759.3435 336177492 amyA Carbon Cycling Carbon degradation Starch Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 202193.9371 27234.7289 16682.3849 32156.801 8646.5602 17114.8429 14865.6594 27925.1474 12495.1966 36360.7086 26787.4882 254095.2149 24161.6998 14449.0243 208992.7247 39670.9831 39670.9831 11887.7533 39610.382 23378.9572 29420.2111 38345.4136 25886.504 10456.0705 25220.8016 38677.0608 18693.5353 73593.2268 49810.0751 42005.5341 10056.2478 89510.33 40041.6534 14383.2736 52452.9624 19915122 trzn Organic Remediation Herbicides related compound NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 20055.0831 46827.9467 6640.716 15552.9402 2922.17445 3230.4072 1989.16235 5898.24195 5699.1721 63169.8105 5878.44745 6786.2618 4830.3726 14791.4071 14791.4071 10289.61235 5069.3114 6120.0801 7461.0894 6239.2599 2850.7633 2886.2905 14303.9446 5140.00685 9102.405 6128.88335 2629.6919 5674.5222 7019.0538 3421.1086 7969.4565 407999811 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. avellanae str. ISPaVe013 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 15741.9718 19930.0416 11041.125 8334.9891 1964.5344 5558.4409 35799.16 19546.6402 175108.6974 63551.4173 10209.4834 16963.7976 58205.4643 58205.4643 18425.1057 35511.2566 11986.6545 7047.9121 20984.8313 7756.2692 50026.7243 10229.2881 17573.9272 11782.4425 88393.0373 16539.054 18246.5062 35971.0571 17805.8948 27578.1904 7156.8773 12249.1577 159179911 FBPase Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 759451.5953 40118.1825 174098.7751 216731.256 172635.0158 100935.0888 621144.8822 424470.4506 173540.9882 208666.5003 388445.3566 241391.3606 5304501.268 389335.3227 480625.2091 421628.4523 282743.3459 282743.3459 195594.1982 280921.42 185512.3172 571164.2874 372884.9388 673113.4893 261749.5459 143794.3444 325384.1506 237595.4292 476929.7592 339474.6223 252903.8713 149185.9572 159964.7239 248278.9376 150139.4431 462590.4922 262086229 amyA Carbon Cycling Carbon degradation Starch Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 34450.0758 10998.6222 6914.2439 7333.1263 10924.9613 4867.9803 34441.4227 49490.6497 9443.1958 160503.4078 22445.2962 9079.0316 19109.3259 10145.0419 10145.0419 8764.7411 17082.1502 20272.0219 41547.2563 79600.5766 9204.4078 10370.0799 10590.8757 12721.002 25414.809 75401.4898 29584.7642 12193.7796 7115.8723 13061.4582 12756.5983 18270.3169 20786.5275 262284393 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 8011.1253 17429.987 8260.1719 8957.2902 14112.9134 7518.372 13436.8451 11304.3616 10891.8456 8285.8437 475632.8486 13866.4494 10112.2417 5449.9496 82235.6577 82235.6577 10090.4376 22898.7506 6929.1296 10418.7852 577802.3984 5875.7111 13171.3391 5773.645 9494.0172 3971.2622 15939.798 4746.1316 9925.7485 9000.3465 6203.7021 8364.3017 4431.9099 8861.8743 220962567 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 63093.3674 153248.7018 21170.8209 18706.2189 20400.4558 13275.8949 88882.1609 111598.7398 77750.8054 28235.4308 201872.8485 59931.9652 1259923.5789 18590.46 358007.4283 200488.6679 34534.4146 34534.4146 56509.9392 65559.2658 22802.2419 42241.0658 226706.8569 23371.829 48917.5989 60569.7529 101167.9738 46407.494 110235.5521 54670.4944 63937.3514 20489.5428 55795.1308 68445.3859 50183.9633 74081.8845 262100182 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 81732.8461 43899.2504 42867.0309 12428.0643 15248.3921 40444.7931 64193.3827 46087.5719 58863.9933 58137.3269 49375.9506 1150506.0666 45917.9724 88642.1958 43309.5586 93445.9748 93445.9748 35730.4233 90837.6139 34016.8973 40078.2298 86276.5006 35500.8968 18365.9473 47185.6741 54356.3642 69004.0083 77517.3299 44753.2336 71744.4836 29118.7691 41433.7662 83528.1294 46832.2273 37452.6907 18535634 endoglucanase Carbon Cycling Carbon degradation Cellulose Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5514.5406 79020.4326 14647.2382 11782.3159 6609.3783 7007.2221 4350.9031 4119.5686 4755.7884 5761.9988 146689.7244 6831.5443 6074.3445 36084.7066 31166.1561 31166.1561 6006.6339 7884.4829 5543.2961 4003.101 15794.2091 8733.5963 17016.0608 11907.634 7894.0465 25543.3799 4547.2075 4163.1251 2131.1251 260947538 phospholipase_B_fungi virulence degradation NA Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 5439.5678 6975.4751 14473.6126 5815.2961 6728.5201 5303.9054 8276.4478 2139.7034 5576.6368 258566796 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 452221.01 155529.9062 235997.39 1538222.4985 2922271.1754 1226175.4645 720426.5267 611663.7813 247547.8582 298384.0872 316298.3728 411496.1753 10279511.0313 399024.695 778553.7062 1908626.9436 604970.1534 604970.1534 282456.7996 446114.1173 203950.6605 769009.2018 460094.5622 420936.8161 192843.8935 223432.4481 404652.9468 281337.1417 729208.4646 480366.0614 363458.4919 414706.7837 231757.0339 285084.6455 267137.6633 711085.2954 302523756 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 135319.0291 24243.4584 6531.7304 9789.9212 12197.6046 8243.4098 5484.2332 6160.806 7693.9208 12272.7853 10922.2891 191269.3291 16636.8773 18998.6819 6924.445 5922.1869 5922.1869 9537.9245 16230.419 16183.0434 18238.8553 11820.1837 125112.1862 6224.7663 7573.2887 91786.8162 6591.6535 30691.9838 97042.6059 26764.9796 8048.3928 7607.7401 7532.3043 5559.5945 18971.3501 90655549 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 4N23 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5574.7096 7212.6718 13064.4953 2185.7096 3067.7368 7423.3755 2649.734 71908.6753 4855.53 3906.1252 2047.0763 2047.0763 4777.2384 12414.8234 6878.1448 4725.1043 7673.5373 6143.1344 8437.4151 6609.8591 10236.4279 2357.199 14158.7513 9161.0014 10495.522 6119.3345 4851.793 7026.6386 2882.1076 6339.6227 139478585 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 11167.3107 9246.3084 4593.7514 6889.7879 4808.0709 3620.0992 7514.1468 2271.9023 67544.6604 3724.6567 4805.2721 5037.7306 5037.7306 5800.5423 13674.5985 4973.6032 10496.7633 3670.8442 4794.0995 9182.9141 6880.4693 16275.6596 9514.7763 13417.537 5989.0134 5435.7781 8290.6211 3414.9976 6232.749 295837010 vgb Virulence Antibiotic resistance Degradation Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8668.3215 14091.808 16246.8962 6633.0729 3308.3658 7829.0892 8260.9732 5629.5319 133867.3174 6309.9873 7312.9491 25303.511 4817.6598 4817.6598 6033.2635 14241.4227 21900.8661 18022.68 33568.8533 8441.3473 7036.0162 10406.1233 9747.8681 3615.7265 14664.6329 13093.4113 15176.7178 2579.9593 4827.0128 8654.0183 7311.2141 10751.8259 206569701 one_ring_23diox Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 16192.605 12795.2393 9935.07615 15205.75485 27480.9847 6261.08965 10475.6289 12327.79146667 6513.95056667 10106.12565 14308.4524 15909.91663333 268158.64723333 15063.99335 9889.97995 8639.90685 8639.90685 10128.13295 27668.87665 11660.5492 12874.94596667 25334.33265 7963.85125 9114.1009 13218.55353333 9771.26705 35106.16445 12164.71945 16986.29766667 7422.43905 10343.9133 9702.67165 18560.6002 317125522 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 75071.2839 35339.6177 14547.0882 19208.8638 56158.2608 7539.7151 13347.7376 17110.3176 9348.721 40179.6052 15472.4533 770557.2193 23019.5456 35954.1399 16695.8943 15355.1233 15355.1233 12486.6424 40211.3628 11618.4471 11000.6657 100408.6355 27320.127 4673.8589 9595.6255 32593.4878 19685.3434 20421.3852 21656.7407 16386.5689 15831.4549 15414.4598 15477.2292 20392.1346 83649.7362 260652457 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 21898.5649 6001.3521 8031.8238 8432.7233 16574.6904 6111.0432 7055.4066 6458.8768 7235.2248 279384.3875 8540.8259 149986.5552 11903.1585 13469.5537 23030.6961 5165.7356 5165.7356 9310.6287 24859.2335 13269.3656 15870.2694 95766.4844 25666.4184 10304.7398 9721.2607 15704.9806 9541.5264 28750.8666 35238.238 16914.9776 9456.4189 12015.6374 17050.3066 14154.5429 17693.0992 70985695 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 29459.623 19519.983 142788.5075 18921.2918 30902.8356 14523.7021 25274.777 17224.1166 16590.7095 37265.6257 40988.6349 35412.8233 342575.0113 19663.3994 65531.5021 43321.145 20123.13 20123.13 29064.8358 34412.9205 22278.3221 51125.4327 41659.0541 24988.8807 23878.7956 26238.2077 27745.6187 17167.6176 95262.018 81741.9084 69319.3579 11354.8668 25904.6269 87584.4065 15253.4864 56773.6128 91687494 alkk Organic Remediation Others NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8050.9715 2940.23 3702.0971 5640.2183 5370.3837 5370.3837 6172.0261 4146.6129 9327.1429 16105.8297 2492.9435 4059.7479 6943.0311 3575.2507 226098180 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 18579.229 12796.0736 13574.0597 8658.6616 7793.0564 9056.7055 9015.9932 6160.685 9701.2167 167605.4807 10627.1083 242386.9534 23316.4363 16832.5278 14755.0854 21274.8824 21274.8824 8207.4714 29240.3161 12385.7906 15926.8262 40765.2047 16173.5463 7606.0883 7094.4921 16475.6526 16036.8117 32417.0957 12943.0162 17077.5553 6090.0364 16135.1135 13682.2866 15100.5438 14990.3571 164455810 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4735.111 8084.8419 11670.9466 5612.6205 8085.0232 236962.3408 2258.254 6571.4751 5986.919 5896.1832 140767.9733 10520.8461 14117.8234 7563.7184 5450.7439 5450.7439 4486.4204 12775.2181 6576.7389 9147.3967 6620.2174 11422.4928 3874.2318 4503.7121 13795.9964 3418.817 50186.9469 8303.3878 10562.9395 6340.3407 5366.6394 5118.7976 3773.396 7586.3297 380681878 cellobiase Carbon Cycling Carbon degradation Cellulose Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 46925.3954 27823.8457 112826.6267 50934.5132 133070.1938 52209.7587 67287.9851 130470.1564 28922.0827 47706.2761 49776.512 40705.146 2168398.3394 71523.11 43765.8096 47266.5268 32871.1208 32871.1208 35219.7913 56499.0792 51200.1263 120982.8366 59692.5267 76399.9632 21986.4342 35970.9169 69891.7997 27130.1711 111616.1806 56597.9461 79205.4249 22541.1048 27590.7603 71654.6278 24673.9605 49038.9416 334106101 RgaE Carbon Cycling Carbon degradation Pectin Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 7925.4215 5373.7074 4390.1751 8989.7818 7014.9948 29331.4757 20667.1815 11776.2156 4437.4838 155622.0659 6271.0528 6632.2476 6979.1165 5511.4264 5511.4264 4415.527 10932.7872 10237.264 5659.0543 23425.4558 15312.1924 8057.7529 6316.7116 14941.4611 4730.8814 15973.9286 9088.3022 13603.1402 8739.9651 6170.8523 10046.5965 5432.1753 11028.4875 294874444 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 258572.7362 32866.5311 230381.3036 201302.1934 120357.4268 78460.8721 99722.5862 279516.4761 91546.0853 118994.5647 165032.6628 116372.1947 2289949.6136 174755.8036 196863.3848 753415.4965 155815.5915 155815.5915 90200.6571 160537.9053 82383.0557 566397.5053 443727.1853 162196.9396 79830.1931 172539.8348 188337.5322 101657.1648 1110739.1805 253190.804 230723.5902 159784.0545 166828.1166 188575.3516 67017.8406 602979.1939 190700954 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 865867.616 574597.5768 3180.5021 11953.1159 10459.2938 16284.4497 112473.9599 4079.9177 4896.3071 6536.2877 3105.901 3105.901 3986.6442 7314.3516 7262.1278 3912.812 6440.4262 4309.3958 3081.2946 4212.2553 6840.4019 2602.2659 12302.626 4078.1673 6685.2157 2203.2657 3635.6752 4518.8041 2712.9022 7180.5312 221210608 catechol_b Organic Remediation Aromatics Other aromatics Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 4712.1977 5286.7502 3582.4938 2971.7056 2451.9352 5011.5582 5937.1024 3228.9597 3228.9597 5250.8442 6122.7064 2691.3916 5176.2722 4790.3215 2643.5809 32381.8552 10940.5686 1877.5841 4296.0179 4285.6496 25843.5968 375096395 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 39710.1137 4357.0311 12301.1317 4783.5447 307587107 amyA Carbon Cycling Carbon degradation Starch Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8924.7002 8140.9688 25165.1852 8712.6504 5112.4778 18483.9848 64016.4069 8723.3163 18680.1298 12673.2211 218407.7825 10896.517 21857.1297 9094.6344 12107.2867 12107.2867 10266.9638 14415.2949 13233.3138 11253.0535 12292.8593 5004.6133 12926.1539 21299.5459 14107.3151 5967.6777 24297.8715 16363.6479 18388.8093 8029.117 75861.2341 18287.596 7810.5644 29554.9984 6594308 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium sp. 40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 96933.0744 52795.957 8958.548 5035.3737 10239.3058 2809.9917 4296.0945 3544.0965 8143.9076 7676.0413 103107.3271 5226.7305 26998.8946 16136.6893 8465.2007 8465.2007 4316.2049 11137.6293 13752.6653 10547.9604 13543.9074 6893.1739 5352.7511 5325.7733 7506.834 5090.8717 23617.3969 41471.8794 22250.1387 5167.3407 7494.5866 13075.1994 4722.1678 11605.6208 225570901 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7040.9122 8115.3535 2891.4866 16301.4072 5493.357 6039.9185 4433.6751 8204.2104 9786.922 9786.922 4084.0832 2299.0881 3738.9619 11601.6467 4287.6427 6063.5539 1395175 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 29352.0929 4978.5181 5602.943 11029.4597 8010.2758 9488.4507 4629.9543 15685.5086 16236.904 15455.3229 9401.3578 306361.153 13536.8238 18851.8524 8808.3626 20606.972 20606.972 7006.9437 28025.377 10911.1502 10127.052 17246.5775 8620.7186 4995.7953 7500.0879 11073.1209 10554.5377 19443.5652 11483.6626 13642.2598 6372.623 8867.7953 35430.6731 6341.5336 19337.142 116622150 xyla Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 14359.753 4832.0985 27004.2593 7968.8413 4363.0034 4825.6588 7012.1774 9180.2855 10108.8375 101497.4588 4806.2276 6795.3722 12895.3366 7350.7542 7350.7542 18599.3742 8110.649 28665.7789 10431.9728 6465.594 12575.9843 15734.4265 15105.4818 34451.7424 42590.0452 12210.7229 3884.5347 16317.314 7380.958 17667.1075 10025.4769 254820226 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 17957.1175 45062.6371 8817.703 5197.7473 14638.4192 7634.079 47599.1089 17255.4237 38538.1736 115598.61 31083.3171 10443.4148 26747.8957 33975.2426 33975.2426 15560.9874 43567.1884 9957.2701 73242.0813 71433.9327 10541.4512 47375.6999 19774.9548 59474.0209 17318.8976 48200.5867 31556.1239 19823.4631 13225.1869 25922.5811 13173.241 21974.9105 5781.6821 291004391 ppx Phosphorus Polyphosphate degradation NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 11265.9297 5952.9042 14592.1144 4909.8533 3160.5958 7154.7748 5159.9036 15075.9394 170667.9033 5787.7207 12088.5981 6556.5424 7667.9653 7667.9653 16964.7462 20256.7303 64415.7781 8171.5874 15318.8481 4361.264 34915.5111 3812.6762 23021.6355 9687.3162 7950.6889 11837.1524 7240.4186 5972.8875 5130.4963 4017.8045 14487.9507 9459.4171 116222446 exochitinase Carbon Cycling Carbon degradation Chitin Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4717.83695 130372.6379 5424.4232 33963.7813 4183.4562 9297.26175 4239.07045 65404.4034 5268.8511 5396.094 4474.45723333 4474.45723333 14392.6642 7746.60195 5244.00605 4914.9023 5368.1596 5109.66555 3669.197 10518.77895 3022.3959 14162.3386 7066.41066667 3210.3353 5054.3118 6305.75985 2593.0362 218458458 pula Carbon Cycling Carbon degradation Starch Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 31400.1221 110699.2006 12590.2379 14816.4891 15773.2481 18395.5865 29646.7495 7955.188 15751.6801 19596.197 24939.8367 18352.139 1277732.0499 17820.7781 14287.8128 32998.0592 32427.4061 32427.4061 15736.0367 33186.4657 14242.2746 24258.6214 37596.5353 33673.9291 7493.415 14621.3241 22536.7721 11655.082 53759.7472 18761.5148 25098.0085 17321.2879 48633.0767 23743.289 11445.3189 13777.2489 392437444 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 61494.6168 76401.0524 42269.1891 110627.0241 20497.2418 385625.4238 61047.522 27328.3641 75075.0014 56619.7916 149938.3313 1876514.8751 105574.69 331357.772 118509.6741 71841.8546 71841.8546 111683.1673 96484.5509 45014.2231 52622.3918 191085.9723 67067.5468 31671.0439 68064.6547 118895.6273 226555.4146 167525.6664 133982.6508 137141.215 35299.3986 104370.8315 85599.7869 92269.0708 138714.2333 222055138 linb Organic Remediation Pesticides related compound NA Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 12620.0205 8713.6185 13241.8138 10441.5156 7268.4112 12247.7195 4921.9446 10668.0241 46301.1493 95958.6829 22936.7189 13018.7043 12280.0627 5980.6875 5980.6875 5722.7314 11894.7033 5380.2855 16384.8951 8279.44 12461.0468 8396.2277 12647.0661 8647.9926 19509.9077 17149.2683 14396.7971 5150.6732 25518.3043 6787.3872 11757.033 365259649 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 15115.5351 39868.1629 6614.5102 17671.5612 7887.5066 7527.9094 21719.0796 14209.8816 7910.2759 7932.7698 8787.1369 209387.3846 9700.6266 10378.232 7329.6983 8644.3022 8644.3022 3583.5118 11911.3817 13404.8745 7019.5939 10128.4469 13121.6897 4006.3852 7547.4963 20243.191 7077.9612 23177.9185 21164.5185 16687.6748 7301.8821 7635.1562 14280.5332 4435.1368 262376043 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 4105.2375 6716.0897 5472.9367 3188.4147 3773.8421 3615.253 61743.9511 6847.3363 4919.9607 1908.5115 1908.5115 7321.74 4154.1186 4202.8928 4526.6634 12550.4655 4373.4338 6121.357 50270.8147 3332.7935 3606.7288 402248059 mhqa Organic Remediation Aromatics Nitoaromatics Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 210931.2536 104019.9274 25314.9823 4981.1146 15268.5775 22629.7915 39692.4267 124116.9358 26770.4288 18845.1132 214738.5747 52702.2375 455409.1533 19153.1084 41774.7436 141807.5524 43863.118 43863.118 38343.0188 62275.583 61869.2845 95915.8495 52680.9041 104318.6929 48328.1535 14670.1354 51786.8398 51601.5413 159147.4285 83029.7524 58459.7923 29938.9824 38196.4861 92688.2411 154169.1717 35593.8569 327546255 terc Metal Homeostasis Tellurium Detoxification Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 25479.9101 14593.2187 228142.2778 22530.9543 8815.0099 60525.9973 8826.3631 6178.4853 23179.2478 13814.8153 34470.0728 2286493.7486 85214.1166 11031.8699 32093.4239 13989.8342 13989.8342 9775.2056 29331.1143 12419.405 18259.6261 53771.611 23075.5406 8157.1656 8608.5968 23286.3773 9055.8012 79855.8994 35750.0083 31263.6955 100397.5219 36440.6978 17513.9586 6291.6834 20949.1817 389663363 dehh109 Organic Remediation Chlorinated solvents NA Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 123161.5785 3949.1799 8879.9596 5938.6423 3188.7376 13557.5461 5890.2283 6162.5204 4330.3444 150332.3438 9474.0109 5841.8491 12881.9624 5589.004 5589.004 3498.5743 7641.4561 6113.4467 4457.906 5431.0135 3334.5882 10381.0033 11855.8142 3974.4324 81301.1 9642.0519 10709.789 3906.8007 5566.6714 3458.9623 2801.4077 6300.1434 345853542 ppx Phosphorus Polyphosphate degradation NA Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 94783.3199 18667.0425 39583.4052 16990.7735 7401.204 45837.2173 23362.1539 10312.2446 21505.2252 17866.5316 12291.0542 429892.2526 14393.7238 12885.0085 35368.6058 14685.5227 14685.5227 11713.4202 21429.0551 14823.8898 26650.5314 27564.4923 9333.6997 10132.351 11364.3189 59259.547 18969.958 47538.7601 9065.7633 17426.4542 8469.1478 15122.1327 13989.5827 12457.0146 41068.7307 186461326 arylest Organic Remediation Aromatics Other aromatics Klebsiella sp. ZD414 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 36530.7822 15548.2393 16748.4791 46467.1414 28932.131 13306.0703 17489.2238 41057.6334 24525.6953 53238.9507 32135.1506 18949.2572 377129.4141 56492.9453 33510.04 32068.3401 16148.7601 16148.7601 28605.3501 32792.3552 26281.5133 37675.3217 28477.7757 29121.3031 12587.2599 13118.5373 52766.9432 40818.7178 65648.7315 36810.6077 31912.4909 13178.9616 18142.6661 18006.8291 17388.2946 51184.5357 305858210 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 5310.4578 9871.1877 34220.3317 151506.7711 9583.5283 7537.1039 15250.5418 15250.5418 11685.5977 3964.778 5199.768 6074.9813 4771.8404 2115.5048 3012.7119 251794925 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4303.7654 9280.5084 5994.265 28899777 ppx Phosphorus Polyphosphate degradation NA Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 14714.1893 13364.0392 24428.85 26130.4237 12319.6141 11399.0638 15999.4914 41378.0317 18509.4232 29284.8823 17549.7582 546307.7338 16354.6233 97866.0538 19114.1878 16900.723 16900.723 15309.5663 25085.1535 18457.3605 76109.7892 40627.2571 84149.4476 17245.9728 12848.2759 23759.3153 15266.749 66004.2151 27568.7168 27024.5077 17981.7395 25841.8763 14311.5357 19204.2329 19472.3406 34017136 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 103160.5544 21152.5472 125907.0674 13201.1701 5338.9827 24933.7732 12144.6861 22855.339 18427.7851 11385.877 14045.6786 183992.77 29759.6913 10475.3295 147472.8136 26623.9739 26623.9739 85156.0588 26019.4964 25537.1013 9455.213 110156.2366 4844.567 9360.8604 12801.5365 15876.296 8599.2158 36910.5698 20605.157 48228.0366 7305.2591 36311.6295 26539.4746 7218.8184 23726.0738 241204553 cysI Sulfur Other NA Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5080.3906 3832.6239 3682.6418 5075.0403 4215.5317 3357.1753 5820.8735 5859.0003 3693.9949 3693.9949 5507.187 8284.7076 6188.7183 4503.3173 4874.7773 2520.6513 3101.0943 7150.7066 3004.473 11578.2257 5263.8204 10602.1937 3063.3138 3230.57 5243.492 4503.8346 5481.4174 121495610 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7176.7881 12084.46 6479.6495 11289.8893 6021.602 8553.4357 11421.8838 38274.4897 148467.0714 8866.9934 8390.8779 3830.3526 3830.3526 7967.5694 16231.763 14716.8036 9208.2386 10386.0137 5895.9056 5418.8163 7973.4613 16695.9063 8210.1889 20163.1851 14606.9681 21848.3543 8701.6603 8051.1004 18222.8895 6300.1803 9571.1037 357405128 urec Nitrogen Ammonification NA Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 43060.9298 6912.2138 86327.1133 9169.8253 9133.0264 20149.8205 43975.911 10733.2152 19809.3154 16134.7717 16309.4655 1173657.9186 24609.9296 25330.6198 30604.391 37017.5739 37017.5739 21356.7174 34351.7581 25227.0716 23392.0386 55304.6385 41958.488 13946.8203 26066.1843 31097.4303 30216.5817 48639.7776 21385.2772 33996.3729 16933.6685 30868.9478 18521.6805 35833.719 31911.6167 78696499 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5343.0821 36556.6019 15263.4968 7524.0613 6254.5586 7131.6361 10599.9933 16268.1932 6817.6971 3727.266 10558.9859 4261.589 4261.589 3401.7037 18658.0065 27339.7976 9709.2645 4171.6246 5122.2421 3071.9716 10432.3154 12364.618 13831.4418 10891.5105 4835.6605 9445.1629 5097.5633 8902.6281 356667496 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5597.5457 7007.7478 8127.7189 5640.2302 3069.8088 4532.7825 2660.2021 4660.1552 6444.9336 3267.3591 71277.8912 8758.4378 6082.86 3688.6076 3688.6076 4558.8351 24815.4299 7487.3773 7331.7907 9013.4094 7317.4173 3288.3126 3060.6694 22020.8348 5976.117 12838.6042 4892.8185 9065.9453 3569.3796 4848.3074 7073.9897 6235.2059 8402.9159 333604207 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 12558.8193 11247.9766 11546.6923 6360.9427 19308.3596 11435.267 10338.4528 7539.4679 12287.4799 7895.8212 296152.8429 10412.934 12906.982 6881.3878 7179.1377 7179.1377 7147.4551 19294.507 12085.5668 11384.4569 39784.6598 16608.4479 8556.7268 8522.2708 14315.8347 9591.5573 180149.3807 7118.4288 13969.9548 9426.7414 8363.291 11056.5083 6172.1454 8898.0535 62086147 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 4635.045 17682.5813 2380.0763 2730.3039 4461.284 3612.2346 6225.9757 4478.2564 73979.2476 4306.7855 6308.0435 6160.8699 2280.382 2280.382 15471.6809 6415.5156 3621.9583 8307.4765 24453.4208 9057.4519 9402.7877 2061.7397 11706.138 5687.5754 8433.5125 2160.1086 5259.8462 4333.3141 2635.592 7089.2022 365972455 nirb Nitrogen Assimilatory N reduction NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 43637.635 22483.5401 46637.6874 115954.9213 16848.0537 20931.6677 29374.0785 37757.2327 31409.056 36473.486 126255.5753 1094212.671 41278.0657 65206.3975 44252.2312 52624.3939 52624.3939 15326.5424 73998.5814 45124.8126 54348.7349 45216.7352 67421.2591 17766.3196 29025.7319 52659.7394 28649.1754 53823.062 54171.145 152470.7995 17468.1641 22538.0505 41528.8971 13272.6212 21176.1541 74057997 dsrB Sulfur sulfite reduction NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 12074.5539 9200.0935 9934.84005 6494.5662 3741.3295 5407.181 18040.5528 9920.4725 2391.8822 18213.0146 3777.9065 14419.02995 4274.6992 4274.6992 4627.1235 10429.7713 7577.4914 6473.5875 11973.6877 3932.4793 3154.7876 4709.1034 11935.3131 3985.4677 15220.9197 9837.1894 21522.6007 3526.7067 7841.806 35994.4708 7877.7551 4753.9922 385803909 amyA Carbon Cycling Carbon degradation Starch Haloquadratum walsbyi C23 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 36434.2934 19405.8175 27552.886 31886.4757 20435.5093 24896.9771 24024.8081 26079.7201 20319.9074 21985.5462 35580.1021 15565.5085 545328.4671 45572.7591 38452.2113 30934.2967 14165.348 14165.348 22774.7652 33797.9119 25130.1152 25444.2324 54211.1658 36193.8761 14190.0599 15344.7382 41679.9485 41259.3293 199874.9094 39706.6855 52399.0319 17701.349 22099.6719 42780.7769 15327.4296 57437.2115 83757783 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 4676.2521 4304.6036 3580.3975 3888.0928 2046.3495 5627.6228 4498.5006 3252.0197 86408.354 5828.8541 4320.959 3520.1372 3520.1372 4030.8946 7525.6119 5076.146 3772.6464 5980.5895 5251.9302 3585.5755 8582.6782 3008.6221 3963.7787 6317.1067 8449.8754 3526.093 4877.0601 4149.8873 2952.6513 7170.7601 255920367 ara Carbon Cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 26508.2989 20459.7234 19227.5792 9018.3015 8585.4115 9077.3749 29631.1958 12269.2683 10335.2156 19518.3535 12702.7461 419393.3562 19938.477 25500.4159 25086.4584 17955.6105 17955.6105 15775.8374 48755.3861 19121.9533 18142.8777 31748.1976 18052.9984 12038.8301 11862.9606 26250.9412 11377.4066 43908.0906 21478.5672 29802.1562 9673.1158 11758.2343 15646.1281 9871.4162 31037.2936 32471653 nirb Nitrogen Assimilatory N reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 6125.8966 71383864 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8987.9938 36568.4032 10506.442 8682.6502 8016.2965 6880.1981 23724.0077 10992.2428 11799.2421 572872.865 20252.4388 7112.6771 5422.1606 11156.6484 11156.6484 11203.9836 14001.4248 9992.6586 6836.8291 12683.9314 7090.3181 6080.8212 6107.6296 9878.1434 11087.1853 69609.7976 32985.6598 15404.3033 14532.1429 12561.6821 21509.6265 12291.1286 67374.2631 226944670 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 97150.6232 76049.4678 6075.7466 78260.5467 29935.545 47103.5108 19038.6765 41654.0148 68298.569 76632.0346 41884.9345 2325621.0245 32652.6931 31096.8201 38693.923 34412.5091 34412.5091 158018.9872 46832.8197 30342.939 131116.5754 41718.7421 11686.3035 67684.5195 33381.9112 32518.3079 47238.68 74938.5166 70143.6778 32586.5543 69530.4209 49412.8952 38907.3241 20493.8846 73230.3996 110826488 aps_apra Sulfur adenylylsulfate reductase NA uncultured Thiobacillus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 8434.812 9063.8425 7514.0588 6842.4002 6645.9917 4167.0662 5883.9633 6557.6972 2748.4283 80146.5017 8495.7209 4924.282 4109.6827 11889.0675 11889.0675 4616.5857 11911.7634 8688.3979 6676.8514 27816.5969 6167.285 3934.3093 3594.1974 9344.0612 4851.1403 17124.4177 8389.7075 8405.0343 5027.3717 4181.0734 5252.8468 4321.2425 10457.7461 68348633 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 7674.9803 6242.1291 46315.5991 12330.2507 12895.3499 112022.5796 6395.6373 5370.5512 8271.2195 9805.1026 4719.1484 174479.0134 16920.3137 9417.6869 10315.4476 3847.8546 3847.8546 6670.2696 15229.8981 12527.8726 10456.6728 12142.177 6467.4015 4302.5571 7321.3574 16775.0738 6170.8508 21076.3728 8755.541 16658.4113 5530.1588 10285.6565 13111.0136 7738.7147 39046.6257 209517820 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 193493.098 33797.146 60171.112 38606.847 39859.302 38983.3286 45944.7535 137788.5856 55033.6768 57385.7558 200516.5067 136220.4263 1802064.5637 101498.1194 70234.8899 155285.1105 130128.3722 130128.3722 82849.2172 625069.7216 85365.1644 82572.4328 184267.6683 28664.4388 128428.2232 85274.0338 106832.1166 136948.9854 285944.5836 142869.2244 369983.9059 89410.8379 83944.7451 116581.5749 89234.5255 40864.0326 167651849 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 5946.4198 11436.2928 5762.2252 12992.0027 4683.0934 113605.5835 23390.8077 4896.3312 4896.3312 3526.2152 20073.3088 3805.9639 4324.0431 5819.93 5201.9632 5268.8016 4621.6346 4101.188 24157.7506 326775856 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus XylebKG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 331434.4595 38108.6421 126310.6172 129376.7203 184290.8041 83922.5651 80587.5675 186637.0829 229890.0858 116074.3259 188958.4681 222802.3388 4634930.8767 200695.6015 170836.0059 370699.7187 225265.3096 225265.3096 117611.1224 281444.1472 169926.9588 208438.4059 273131.9391 170228.4554 212013.6929 185456.9888 131877.9997 131627.061 676741.8142 175209.175 354506.2522 141713.1908 156464.7535 186340.4849 138922.2662 260595.2364 3372191 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 15280.4167 7144.3547 226346792 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6869.7821 9668.3201 4419.2251 2301.0856 7959.4875 4345.6087 4258.0829 122180.8859 7827.5502 4254.0882 2531.6754 2531.6754 4230.0069 33083.8638 7480.1866 7236.1544 8308.5709 11177.1752 3562.6287 11347.599 9863.4145 3216.2652 13546.5839 7139.4627 9968.3719 3801.4514 8594.8434 149986.7866 4617.0103 9896.2297 225573965 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 4217.097 5981.2372 3899.4663 4028.479 3006.4257 5612.5698 4635.267 3186.776 117424.9151 7195.9033 3679.4522 2758.9122 2758.9122 2807.5845 7922.7008 4675.0843 6356.0957 5477.8941 5434.8199 3077.1259 7398.4683 2266.408 13094.6582 7482.0759 2506.193 4237.3584 4056 3491.3977 10081.2833 384214005 nagg Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4260.9447 20260.9833 10783.9731 15357.1961 18845.9132 7383.6681 3972.636 84926.3446 5899.4347 5578.9245 6427.6109 4425.1637 4425.1637 3105.1905 14376.9211 7585.9669 4088.7736 2252.4396 2894.3707 7516.4439 4962.6914 37345.3294 6787.7815 8983.383 7412.0956 13762.4322 13566.0717 3450.6904 294677245 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 40942.3437 14124.7516 59643.4626 27960.1648 33462.4869 42290.802 116149.1999 700863.8606 34758.0623 57608.6593 56630.8711 34026.7468 1067550.1748 67156.1768 66832.7217 58795.1155 88448.2972 88448.2972 149719.7699 136026.9505 51598.8369 45754.1139 106839.0079 40798.6675 29996.8372 52110.2135 163441.6838 63011.6138 229987.3825 186032.0372 214524.3056 119414.1805 69408.6715 85776.1285 87135.1621 38637.1344 37925897 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7950.414 5185.2044 4640.5656 9548.6739 9117.7071 2280.0677 9750.0435 9846.5976 5758.6165 166682.4781 9076.3848 10532.0524 10042.7264 9483.108 9483.108 4603.88 11784.0667 14918.7714 44578.8617 23982.4083 6087.5946 5026.8011 5047.3056 17853.4384 4425.5679 22621.2918 8021.9298 13043.082 4909.4737 6259.438 7533.249 4573.1721 6454.8996 37222147 endoglucanase Carbon Cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 19184.1367 31479.4946 8616.7893 20251.5223 6041.8537 46847.075 17510.358 12018.4985 17051.7248 20826.2434 9573.0177 718190.4764 36999.5659 22009.0627 16935.0954 13088.5429 13088.5429 13391.246 26440.6376 33470.3378 27307.3298 45619.6578 17509.0193 12815.0099 10058.5858 24299.042 14240.2941 62229.6604 17010.555 48288.6227 21081.474 16022.2851 30643.1514 10546.5124 23964.3752 297193687 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 704037.7273 2083021.3047 572232.6063 671102.7755 876060.5375 1844070.6086 366534.4868 746238.5836 706195.2871 648595.4434 699431.1496 405559.7148 17729717.1174 588860.9373 788729.1629 1852149.8466 707539.1143 707539.1143 515346.6384 535307.2666 388455.0715 576708.5944 905589.1648 1118422.7152 498128.8872 394714.527 742214.5252 320398.8275 920379.8178 826374.1583 601584.2823 323008.0613 411555.2886 425928.3246 330473.468 975326.2448 62468090 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 21913.472 5847.6953 14779.2064 26327.9928 17172.9367 6209.6282 18499.2069 9926.206 42109.7483 11019.5872 17843.8351 242823.7454 9562.9089 12356.7063 12210.4633 29864.0655 29864.0655 8968.6764 21554.8486 49403.8417 53499.7352 15074.2261 14646.8702 7061.6982 34007.3795 27525.8207 48993.5445 632281.413 15826.7011 26144.7977 171064.0408 10789.5502 18636.0542 109016.9225 8977.2763 332295273 rubisco Carbon Cycling Carbon fixation Calvin cycle Thermodesulfobium narugense DSM 14796 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium;species:Thermodesulfobium narugense; 11497.6788 6055.8149 12912.0133 6324.0958 7403.8703 3468.8746 8634.8693 9704.5347 5267.4508 913062.5629 10623.202 9529.1245 4129.9437 4129.9437 15352.9958 16631.6521 10258.8865 19260.7675 9494.3749 18379.1824 5555.9728 7043.9738 10246.4575 9940.5279 19997.8798 9722.8249 15037.4649 10074.7039 7390.5191 11862.7023 7414.0205 12270.8771 150014824 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 4464.9284 4306.2015 6097.1795 6131.7632 4233.3886 5409.1526 4023.9357 116708.3085 7288.9852 6350.4325 8462.0576 7452.6766 6283.4468 6297.6529 6263.0337 2201.0401 2514.3343 6732.4185 3611.1089 19243.4904 7868.4424 5594.5284 2377.5323 3321.0483 4186.1986 5838.6291 8438.0097 192289979 fccab Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11390.5736 23322.1676 6223.6086 8378.9455 6386.2526 3422.0614 6062.9464 13674.3532 2934.9856 76352.8318 9049.325 7649.1182 4188.4684 4819.5447 4819.5447 4804.4061 10754.9589 12635.7382 7534.259 117137.4666 11285.4026 3878.0445 5107.4328 12683.0434 4630.4665 18678.1589 10709.487 8762.8903 4920.1316 7874.528 6838.6757 5535.3792 12812.8212 282950639 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 32601.9003 17968.7738 9533.0758 24370.2044 48514.9508 41183.9877 29327.4383 12277.2999 34905.8658 38811.2018 24939.1167 378123.7857 38492.2445 188473.0682 24296.2351 34058.5201 34058.5201 17477.4291 50388.6335 14246.3821 28272.1059 41950.3715 30198.5009 31291.1375 25844.4721 35262.594 30436.7044 43737.3472 23201.1809 39990.8024 17141.2072 29998.4307 34905.8551 14944.4469 82795.5742 187438868 nitrate_reductase Nitrogen N Assimilation NA Emiliania huxleyi superkingdom:Eukaryota;order:Isochrysidales;family:Noelaerhabdaceae;genus:Emiliania; 528110.9298 40827.9914 179528.8276 57612.725 170827.4684 61519.1451 71666.169 302820.5264 76492.0863 101996.991 206458.8417 328115.6561 1849985.5705 128092.4156 376945.2583 209789.7802 115152.9793 115152.9793 80525.4618 141359.4559 104099.221 79587.2292 132383.5046 57662.2341 102118.8711 82946.2807 93494.103 80458.1072 274977.1079 147091.5329 141669.6559 43991.1326 130807.999 114016.6689 91497.3794 126475.6161 403722799 badh Organic Remediation Aromatics Other aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 24383.8028 36305.8677 17669.2485 32562.0912 41057.292 5299.069 18647.7223 18835.8405 11505.3026 18942.0727 29270.1264 53387.9392 686014.2085 32618.2679 29451.6583 29714.1585 18354.2591 18354.2591 21849.1561 48145.9932 39017.6355 24645.0172 38499.5531 30008.7772 15138.9274 19710.897 46549.0978 15001.7128 61064.3326 52300.3083 52021.8981 139703.9521 21121.1892 30486.5524 14366.8715 52225.4962 333908682 nahf Organic Remediation Aromatics Polycyclic aromatics Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 5380.9607 4068.5231 3514.3976 6761.7601 4118.7904 3990.1369 170724160 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7820.7912 5148.1234 6789.59 4416.2124 4189.7172 2702.9034 6478.9355 6674.5343 6346.4706 128816.3756 8595.7911 5886.5343 5326.6646 3667.5915 3667.5915 18189.0178 12912.4304 9302.6201 8249.63 10780.4237 12131.5726 4774.0682 4557.4605 9114.2241 3415.7788 20806.3306 5464.4933 12006.7428 3833.1055 5088.6091 6347.5044 3934.7037 26890.2039 381359441 oxdb Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 29131.7026 12242.2429 16100.2895 28811.9716 17195.4734 16573.2499 13286.4185 18134.9725 26118.0701 14915.9923 589971.2034 42327.7356 23765.4885 45852.7403 17048.4445 17048.4445 26177.2224 38293.9115 23904.5452 37872.4338 34204.5329 34782.4389 20913.4493 16617.5355 36247.805 14926.856 48227.6191 29051.6666 41111.3586 20668.077 30360.7305 20922.4996 14724.5831 67999.9528 145219675 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 75935.4431 22965.1646 9025.7112 8131.734 9565.3203 19863.9148 23034.679 36817.5195 30579.1237 23584.8496 380785.401 14630.6903 38801.3433 136530.6846 26399.4396 26399.4396 16711.0698 163777.4292 41955.6368 1453014.3769 62053.8097 50235.9127 421660.5578 20987.6136 26810.8612 32664.5855 82681.2723 43805.4799 31526.5682 22319.6763 31040.7295 36805.6784 14230.7534 53007.0481 358069532 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia cenocepacia H111 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 14258.7012 7700.283 14900.2525 12162.444 6704.4624 4961.8401 7598.2597 5216.0807 4338.3163 14885.5377 12659.2754 82661.5841 6334.9683 190244.9347 9121.3226 5675.32 5675.32 3641.4461 8273.5526 6701.0353 12341.1403 18960.5527 293443.0584 11270.8993 5320.2791 18936.8435 21481.4564 38982.7881 9956.9772 13158.8902 9442.6453 7785.5519 12694.9976 6397.6139 8481.836 149792878 pula Carbon Cycling Carbon degradation Starch Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 30760.4899 33101.2248 16335.6034 54911.3222 28716.6961 16249.0994 17789.2169 17684.3085 29859.3532 22464.4445 467003.6695 20969.5979 22593.1434 28369.1283 19848.8462 19848.8462 17298.9832 40436.0139 24160.0583 38517.6449 32549.6547 91457.1419 25371.4545 16429.4985 21648.7807 14041.4467 48294.1677 33961.935 40493.3888 12700.0038 24971.1332 24933.4189 14018.9755 33456.6751 294628995 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5514.7508 9545.6895 2518.5095 2768.057 10990.7946 94881.0449 4866.0803 6077.0134 11709.842 5532.5232 5532.5232 3176.2337 12061.6418 4800.1481 4209.3761 6854.0607 3069.4055 8175.5589 2361.3113 8981.5865 8118.6706 7171.4691 2489.0709 5773.917 2446.0006 25900630 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8153.0579 10861.7925 26652.667 8831.6931 2254.4442 3804.0774 27362.5268 4591.3353 3010.6272 105542.9349 5327.9844 4791.262 9569.6863 3589.2852 3589.2852 4080.3878 6378.0533 4680.8427 5203.1117 6225.2792 4813.7092 3529.625 2512.6825 6144.3714 3275.7615 11821.2515 5505.7945 8450.8869 3258.402 2941.9793 3732.6798 2482.2524 7814.3638 23392985 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 92814.0585 16563.3359 5458.2201 23328.564 12059.3349 44276.7331 19579.9944 11723.2185 26129.6183 33501.8906 33707.2452 1445010.4236 19845.3414 30659.4902 18388.2684 15856.9829 15856.9829 8168.0911 28636.281 22862.2792 20809.0121 41684.9196 27799.0828 444403.7579 49672.0135 33496.1445 18190.2992 96160.5122 59827.0134 45997.5264 15946.451 25969.6168 147061.5255 14804.0552 82546.3057 4580551 tfdb Organic Remediation Aromatics Chlorinated aromatics Sphingomonas sp. EML146 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 14430.0442 3189.0194 13085.0353 2513.4589 3122.0591 46247.7747 5810.6138 2349.9629 5976.9223 3903.2394 8579.4019 1879.2587 3657.7822 3012.988 149811768 nifh Nitrogen Nitrogen fixation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 18968.5842 15266.921 22249.1058 22075.6988 15803.7189 20323.8421 10974.6447 6677.7101 18788.6669 19406.4866 9908.3988 399071.8113 29774.9899 27023.0275 13633.0674 9728.3318 9728.3318 14216.7386 25894.7983 19132.121 18425.7424 26467.3494 32609.0692 9766.2263 9607.0025 23954.4709 14363.8966 37206.5439 8412.5501 21602.5336 12984.9142 13920.3011 16552.2523 9272.6854 28147.5226 24421491 nirs Nitrogen Denitrification NA uncultured organism 9643.6497 9981.7477 2152.0338 25371.0205 2194.9508 8790.7203 13071.4093 5896.1672 101719.5324 12947.3538 5638.2579 5402.3892 5402.3892 3714.9664 16030.5679 9369.7853 4081.2876 6463.9522 65588.6385 7726.9363 15895.9877 8617.5364 38680.2526 12550.5578 12880.8538 3891.2645 7155.4319 33389.0276 4998.9466 8338.0366 33391359 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24028.2578 35384.6395 8662.7567 54681.9897 13517.2786 24803.5132 16282.2597 11973.7393 24517.7486 303782.0576 15595.0475 11837.0139 35529.5597 9240.367 9240.367 12989.801 39902.2585 16069.8086 14453.6334 13041.9265 29494.4506 9927.008 11265.3889 19327.2217 23974.4415 56196.429 11945.8483 30693.7927 9027.7493 15362.035 27372.2416 8885.3506 52548.1422 50982444 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5854.3696 2282.7534 4405.4352 4146.2352 2904.4716 6703.399 5091.7876 4750.7342 11181.8933 3983.3509 6290.395 8248.072 4248.5784 5218.101 86605045 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33712.8545 17107.1152 24448.5078 12839.4966 8244.3488 51739.5695 23064.6586 7652.3568 39048.3842 34710.8886 89386.5377 558161.1478 56670.1034 52757.0425 19245.2473 19107.5787 19107.5787 17368.7826 61074.6476 21401.0468 36628.822 32127.7649 24823.4885 16602.7141 19807.3052 25509.5724 41447.8991 83711.2019 23646.9715 28269.1074 52403.1376 19014.7303 24837.3497 12304.8092 41271.3675 154497249 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 14305.8693 15726.4462 12814.763 2215.278 8651.6537 2221.0225 19210.5303 6723.4413 16482.2477 165052.9953 6402.597 9520.8794 8228.4773 7102.2614 7102.2614 10771.0948 13394.4275 19588.0109 29536.2515 15223.8688 8950.2592 6428.9324 9185.7409 14814.5743 14821.6739 55249.5941 19744.4657 35462.2293 5285.3355 8954.808 11754.4262 4709.893 20586.6096 316930977 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7987.1263 12927.6315 5970.6453 2120.7921 8147.15 9203.8321 3517.2803 369404.8794 6898.525 7519.3294 9766.6652 12032.1568 12032.1568 6595.7551 12153.9045 10930.7711 4534.737 11388.4757 13103.4502 3712.4961 4143.1214 12508.6737 6270.8865 17320.2238 13503.7929 10741.9179 26051.1997 7772.2239 8360.5458 5603.9196 16240.343 177840849 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 17258.3707 15913.4232 10869.1112 11653.4755 10608.5823 18595.8278 14222.1304 26427.1276 20002.2864 8662.1178 11355.9242 105949.551 10507.7246 11291.0114 10117.0525 18643.8167 18643.8167 6182.4279 20336.0915 17568.8467 17172.6519 19252.5333 15976.6699 10741.4013 12338.3726 27517.21 10195.8388 20268.2153 16050.6551 18371.7099 24426.5704 18398.9398 20924.649 15296.7406 30768.1912 302683046 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 62313.5243 42138.56 20644.0805 5448.9605 17905.6588 39004.6076 6479.2687 15356.2942 45557.0071 35068.7345 373741.8333 98867.9637 91545.2535 35738.4962 39040.7594 39040.7594 13063.4382 37102.3179 24739.9143 15655.161 75051.9255 10956.0984 23189.6641 42243.7028 121146.6858 26008.9719 62101.7892 178893.2848 42462.7954 10327.9982 24474.4652 28419.0632 12690.3404 23293.7895 225388419 atzd Organic Remediation Herbicides related compound NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 6744.8302 6069.7136 7344.1513 2238.8666 4865.6737 5788.6563 9917.2327 3811.6897 368176.7746 12723.309 6713.3588 13584.5111 3527.9837 3527.9837 4977.2957 15291.441 8673.0304 6730.4648 7857.0947 10191.942 5838.4696 5200.0567 8569.9237 6509.1529 22433.7216 9166.8039 15608.8042 8681.3313 6956.2555 8438.819 3672.1366 14373.3596 194364599 ppx Phosphorus Polyphosphate degradation NA Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 5782.7643 2020.266 4141.9632 3612.4183 2679.8015 2699.3395 6053.6524 3916.0425 4723.5894 2325.3325 5470.5941 2495.3409 10851.5065 5876.0408 9060.7086 4061.9638 4299.9535 2662.7829 4707.8504 2429326 endochitinase Carbon Cycling Carbon degradation Chitin Stenotrophomonas maltophilia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 9991.9183 7984.0496 4120.6032 3154.7277 4619.5996 7625.9502 12164.7952 4474.9328 214255.1319 5373.3919 6799.8204 8622.8067 3790.4023 12333.5818 10969.8594 19847.3213 9039.9035 19245.5062 2813.29395 5245.4126 8277.2257 7307.8942 14569.62295 8248.74455 10856.3045 3448.91145 5806.06455 3566.1901 6697.32345 295413048 one_ring_23diox Organic Remediation Aromatics Other aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 36634.0812 43955.4406 27796.913 188532.0604 23016.5254 40064.9377 32208.1858 18083.9295 55860.8959 84531.084 63560.5339 1328096.1439 30913.496 70322.7242 132816.5708 40157.7478 40157.7478 27929.1971 122220.4393 51957.1285 83698.2582 90371.6412 44111.6337 52313.0905 33567.4168 110826.498 21145.0771 154588.8496 150413.0896 22075.6831 58658.8161 62869.3924 17965.4681 20352.4934 325291609 phn Organic Remediation Herbicides related compound NA Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 5175.2344 3624.9621 5934.585 5188.7056 71593.6173 4229.1084 5354.7761 3064.7547 3064.7547 7917.3672 5017.436 9312.159 5957.1727 2440.7244 4135.7573 218462581 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli Kim 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7404.2949 11496.1485 34656.7456 11451.3158 5893.8603 110826.3033 15002.741 6833.8657 16858.3872 4052.3051 174536.9305 8536.07 8138.6358 6360.3558 6335.8294 6335.8294 10725.3458 9465.4255 9832.3828 5264.4416 10355.2318 2716.33 4612.8438 8167.9866 5192.5972 15022.8864 10206.5537 11745.0227 10222.0115 6166.4399 6732.5361 6942.0722 7372.8185 398867314 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 319071.7644 12926.0726 160645.8638 121180.6514 29049.3632 25953.9987 29293.194 5854.9011 22735.1646 23228.9061 25695.6238 293423.0492 15216.6428 26946.2395 57650.4293 24914.0505 24914.0505 24639.7675 53281.4893 45194.3302 15421.8817 35684.1756 23983.7866 27054.3954 19074.4248 84664.5562 61732.8967 50156.5918 103718.3577 80304.2039 21015.8494 24610.0289 29241.4905 20672.0454 129498.8362 110589356 tktA Carbon Cycling Carbon fixation Calvin cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 7360.7955 1155703.2477 2569.9412 11811.86 3750.1391 3267.4945 5188.2582 5223.5607 15839.3304 4241.8224 9631.9738 10246.3747 4995.4772 14276.5023 4442.5015 2635.64 3328.5434 15531.8552 11907.0818 6578.7595 11575.4612 7716.3368 29545.2132 5742.2333 2806.2404 186911824 aps_apra Sulfur adenylylsulfate reductase NA Candidatus Thiobios zoothamnicoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Candidatus Thiobios; 33526.0031 20988.855 5706.9701 9912.8364 4957.2924 5442.2159 6676.8642 7893.0765 141293.5796 9453.6015 4144.224 3049.2474 3049.2474 6504.3861 13217.7616 7934.2872 4664.7259 24035.7875 10256.1686 3935.7818 5265.8805 7433.1059 6893.1038 19768.4015 9887.536 14713.1511 4790.0362 9583.2174 10146.4444 8646.0718 4997.1025 291513628 heparinase Carbon Cycling Carbon degradation Heparin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 8298.1736 5549.4472 19384.9748 5081.5559 7102.0339 8197.0993 12016.2338 5155.3072 179389.1402 12082.1719 9873.9135 9449.6279 4868.5467 4868.5467 4728.4797 19683.461 10213.8879 7924.606 13123.8897 11589.8521 4503.1759 4916.9852 11078.3795 5855.2768 26708.5114 7040.9521 11995.4228 7382.0959 8191.9021 18250.392 7930.8119 12194.2313 251790274 phn Organic Remediation Herbicides related compound NA Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 8447.7834 9907.3457 11450.0325 22459.6867 7430.6586 7006.7804 13918.1137 8166.637 15740.0176 16336.758 14902.383 307683.0599 15714.5941 37979.7417 12292.2051 14423.77 14423.77 6735.9153 54163.7767 13449.9653 17065.2901 23180.8274 18029.7399 244802.1164 10245.5105 32647.4563 11887.5219 36232.3109 18738.6909 28510.4678 11308.8835 9794.6276 371969.7264 6957.5057 30962.2217 46850304 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 156665.8969 19828.1535 37157.7485 39081.1049 21700.9844 7191.7166 30965.252 40329.8047 32289.288 31854.2672 41626.4671 40961.5628 589683.7354 42079.9394 63416.7368 87823.62 34718.1833 34718.1833 34206.0817 116624.399 36099.1261 39258.7627 41978.3383 57740.2529 29758.8874 143558.3665 42121.9768 33450.0821 71492.3824 43638.9876 242485.8279 21507.3272 134470.2836 47209.5547 28038.586 55851.5497 315182573 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 7647.4592 35611.6873 2321.6929 3307.6962 3162.9481 5727.6022 3008.1163 157027.4736 6272.5052 6075.7991 5451.6988 3144.5781 3144.5781 3616.2067 18848.2132 4767.5053 4959.9007 4185.6143 5386.2616 11572.6179 14458.4029 6998.3391 13756.7566 3325.0819 4311.6324 24947.587 5495.3559 5391.253 3578.9532 3100.956 5894.36 89513030 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 1042536.154 757485.8457 181881.8942 14879.3967 13511.8067 5666.3559 8761.9832 9481.8986 4997.2073 8420.0294 16554.6043 10719.9314 405912.5645 14737.6725 17900.4101 16955.7673 11670.7231 11670.7231 10836.369 24364.6763 12865.1355 18208.1289 20411.4899 15704.6771 9201.1119 17309.8391 15701.7154 24460.0719 24453.4975 9796.6945 37874.7608 8023.6557 18774.501 10198.2206 7075.0069 19484.8091 330823149 xylj Organic Remediation Aromatics BTEX and related aromatics Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 119475.2199 12986.162 63975.7836 92787.3638 59032.9893 58452.8254 49470.9173 92076.7584 71311.2533 88120.8414 91498.0401 93249.1083 5270780.4845 136155.6827 782272.9455 1792903.8327 106732.0015 106732.0015 41563.9563 117719.5243 114013.1808 867052.8888 131422.9972 108625.546 64010.9799 83207.1767 74424.586 94334.412 299564.1548 69861.8641 108175.1617 47797.4629 69983.616 103985.22 68425.3504 70691.6001 254947797 mer Metal Homeostasis Mercury Detoxification Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 6250.0572 11862.5506 23553.8 155214.4799 4142.4482 3451.442 3451.442 2071.0166 2832.0486 10173.2655 315663923 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 5659.8206 1958.4557 2388.2251 3433.8506 2908.246 4021.3154 12497.7891 5293.3809 3882.8574 3943.8729 3943.8729 3240.9777 7387.0616 3694.6102 3587.2835 8393.817 2591.1812 2880.5408 6894.822 2863.8816 9079.5173 4288.3993 1795.1678 10750.561 4189.3195 2489.6691 5555.1064 32895102 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14672.9266 5174.1466 8003.3761 43265.7177 9850.263 16347.7477 14834.8429 12098.411 10087.227 219976.588 12452.792 20750.6625 12943.8652 6393.4958 6393.4958 5549.7031 20705.8393 8275.6016 25982.3845 16845.6962 12757.8893 10786.6 11523.6165 14869.2 18386.0585 29007.9301 12777.6853 15954.8347 8344.3435 13130.5858 16257.5644 8751.4965 10962.1824 351729494 xylc Organic Remediation Aromatics BTEX and related aromatics Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 20541.2752 11227.8165 9667.2673 17536.7818 13638.0295 18227.3206 6287.8459 117196.8282 7026.8727 11873.194 5498.9926 5785.0432 5785.0432 11448.5709 12151.9788 8077.2537 53416.667 4766.3374 4089.7893 3209.6926 5241.0615 8787.2404 5694.253 13713.6218 12113.4168 8258.0539 3224.5645 5971.2746 6701.9035 3607.9779 12449.2532 320096104 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 27537.6533 10148.6798 281623.4827 17209.0963 21429.6645 10302.3405 10437.3383 37622.6049 38008.8857 20490.8007 962791.4954 20532.4444 31986.84 32084.8071 16681.7906 16681.7906 23124.9796 42513.276 14520.837 33505.1083 36247.4648 23761.772 14715.6283 17505.9095 19272.8203 47257.2069 35726.7559 20618.6372 28594.412 7934.6675 36793.3072 50214.6143 19474.1938 56341.7219 83943925 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 15132.7091 6815.0041 5951.3947 8357.08 4607.6282 7844.0541 17315.7284 8258.7164 158856.8667 8981.5244 10144.1599 8201.1369 5188.5464 5188.5464 7957.4276 16295.3462 12562.694 14710.5527 17064.8684 21064.989 6301.2285 6453.9335 13827.6065 5752.795 24033.803 17859.1024 17165.7026 6649.7985 10748.6324 9763.5877 6968.3298 14388.6088 110824271 pcpe Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4131.8072 8211.8821 7073.3604 5407.7508 2954.6871 7307.9839 3094.2809 4897.6215 5378.2113 6766.0156 4740.9147 6050.9752 2933.6239 7197.0388 10894.9729 4083.7859 6310.7603 2756.6439 3241.2843 2978.2587 2813.9874 9279.8097 56798493 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 406328.3489 1694388.9819 287939.6037 803901.4853 214354.9541 52736.4515 325070.9311 477486.1581 250364.7287 197816.396 294873.1382 295868.5577 4495289.566 296176.6103 485669.3067 461871.5519 361163.6661 361163.6661 197551.0182 343344.6909 147289.107 270051.1472 416630.7697 269593.9675 175923.7841 212270.6915 261137.3338 227527.5053 527276.6865 197933.0503 296816.7297 394680.4906 212121.6479 214835.1218 186298.82 343745.2871 239831673 nirk Nitrogen Denitrification NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 64317.9986 20724.6198 32337.5132 32255.036 29881.1551 40163.1684 69370.4506 46894.2997 49571.9613 58026.4424 71058.5501 30101.9051 876949.5551 88831.2888 184640.5593 47846.8967 50091.9628 50091.9628 30946.4237 62809.7593 46854.0176 123837.5054 40074.8546 86954.8902 27564.3141 32859.5337 52779.313 39082.502 99197.8922 50882.4942 55332.6009 61582.0473 28088.821 37825.2531 31435.5069 52225.8912 310913239 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 41789.3342 15607.0964 12328.9602 15760.9 16017.9462 16173.7176 18338.9504 22023.8227 14668.928 21846.3099 22198.6359 17174.4759 488239.5129 49419.0193 24084.6765 25633.5216 10150.2104 10150.2104 22643.0158 27665.8826 20853.1962 27251.5141 59212.9991 28515.6467 15225.6864 14177.4289 22926.7409 26994.042 58649.7395 27700.8897 28620.6226 11677.5156 20231.5654 19383.5617 18194.7737 33019.7534 119465846 FBPase Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 7438.9212 8511.5897 4689.3953 5599.7332 2527.6181 7896.7544 4638.337 4573.9395 12710.2566 4310.1467 5741.5074 22163.123 22163.123 6228.9189 6442.0657 15608.0413 8198.925 4890.4276 6561.7553 2313.0729 8960.561 6500.6257 5097.8279 5846.3323 2608.3337 6890.2802 2853.7556 4616.6755 14022858 phn Organic Remediation Herbicides related compound NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 6428.4483 12450.0223 6010.3246 5488.7653 3107.8897 8134.2846 6908.9566 70348.2649 377036.3862 6863.5357 7573.7673 2428.0719 2428.0719 2726.065 10474.4637 9541.791 5817.0189 6539.9252 36673.611 2936.3811 12388.9579 9087.6078 4910.2583 41648.3064 6225.5534 51993.4108 5572.4599 5459.5814 6543.9577 4642.4881 9169.6683 390947173 amyA Carbon Cycling Carbon degradation Starch Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 46590.8842 27137.4127 29322.9166 155296.1472 37403.1558 18538.7065 18630.9638 22944.2735 28067.9204 33436.9588 13280.4024 282777.8161 33303.4006 34859.2044 47299.4996 25996.8193 25996.8193 31549.1405 112538.4212 30264.7422 51825.0567 16611.898 15056.5188 13142.5206 13864.7202 42045.1991 35404.5261 48920.5801 33068.353 33633.9531 13374.9879 15356.9468 27529.8356 10199.1981 96868.171 284041573 linb Organic Remediation Pesticides related compound NA Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 13552.4891 49953.6535 18767.3371 10438.1265 8697.5515 8257.2419 3672.4292 10766.9563 10761.238 5557.7576 188984.4517 9230.2021 10268.5659 22565.7694 4586.4704 4586.4704 9223.0746 15893.9257 73934.4783 14931.1567 19055.4786 14246.9464 8819.1408 6671.209 14596.6689 6389.1691 18918.8482 15845.5179 19872.1089 5173.2097 8206.3585 7674.4633 10579.2044 16394.6238 375094927 bphc Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 8536.1486 54479.2122 7499.9827 9716.4729 4135.5598 6290.3687 12838.289 6746.3702 110941.1463 4065.7652 6037.1316 4986.47 4566.6396 4566.6396 2614.9624 6353.583 4650.4176 6003.6082 8238.5113 7580.7815 2670.8918 5389.6988 12311.1635 3190.0377 11496.2468 17952.6111 9475.8882 5521.1705 13732.5812 4849.1123 3203.2198 116062642 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 14753.8201 9967.3222 9381.3999 14796.8408 7769.0849 7801.4324 13318.8529 14536.5836 5722.4853 321357.2506 17375.9937 13961.2627 11218.8304 4841.4193 4841.4193 9151.5644 17059.92 14468.5926 22227.3996 16790.7238 17423.9475 6638.9534 17728.85 14340.4687 5673.7337 31524.4228 14593.9153 17728.9941 7204.3516 8895.329 10007.1475 9284.9885 27204.1996 10184710 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas sp. HR199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 82317.7603 145650.6267 477882.3089 24584.6795 26731.1109 51343.4436 334222.4727 89037.9703 35547.3355 40416.7723 47601.0983 1468113.2643 48738.2129 125670.4723 111365.4958 81782.3229 81782.3229 30790.1551 86381.4327 47590.4256 71673.8975 91830.6281 72753.4846 45191.6892 37766.3956 68467.8802 31295.623 142238.0899 61790.4328 133017.2772 18937.5401 44548.896 68913.2047 30114.621 125650.1653 4633580 nosz Nitrogen Denitrification NA uncultured bacterium 696K superkingdom:Bacteria; 7472.1882 6353.7558 9349.4446 6542.3701 4125.9674 12076.2361 8421.6796 132320.2394 7640.3977 5458.6747 4929.0862 4929.0862 5537.0287 11482.4323 8542.3296 7335.7215 11273.8958 11238.2421 4342.1868 3533.3228 9845.8722 4874.1401 12922.8915 6866.8469 9718.5373 4818.4959 6130.1194 6064.6931 5705.9191 9590.6801 149246870 phospholipase_B_fungi virulence degradation NA Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 4289.4541 8186.0745 2162.8919 3464.0779 91365.5095 3484.8016 5283.4783 2662.3722 2662.3722 9271.2748 5271.2395 6509.0671 6983.115 9817.7974 3162.1063 3297.6501 6138.0667 15430.2063 4111.5852 6219.5254 2062.3521 3597.8633 5027.3743 3555.8754 5993.2165 170027539 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 11512.9359 3540.3701 4014.7862 7003.5751 25068.1118 20878.074 77647.1509 10248.1746 4912.5455 117966.2139 6455.7688 6455.7688 4453.5374 9485.7334 5701.4948 12882.8205 4090.2731 7099.4763 9294.9281 81877.949 14143.096 35210.1477 14424.021 33991.2524 13195.0388 12537.9017 3971.2371 6943.9979 58002364 FBPase Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 10402.3072 13050.6505 5365.6262 21738.8365 41430.7907 2470.5344 7419.4896 60551.6971 26119.8043 132371.244 27430.0702 15142.8717 15097.4556 16373.4682 16373.4682 8631.7315 61553.6591 18492.3602 4272.912 20818.1984 8455.1507 8958.1334 17323.6185 18672.3886 62256.1001 15041.7871 15343.2764 17132.2118 6215.386 8604.9757 23067.8066 27343.105 355361862 badh Organic Remediation Aromatics Other aromatics Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 15883.8978 13434.6322 9398.71 6901.3854 14427.2416 4323.9257 7743.8154 10283.6089 5382.5774 9304.9091 14388.8144 13324.9433 535516.55 14051.4142 18660.5724 11822.1045 13562.4863 13562.4863 10174.5025 17464.9513 11106.7456 11827.031 16424.4315 14901.0683 7903.6093 15629.7715 22464.5648 7564.7049 192319.9691 16173.6246 17986.1758 32527.789 10031.6621 14037.858 9877.2761 21779.7912 302853493 actin_Viridiplantae Other Phylogenetic NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 589861.3173 14775.5475 647995.8676 49029.451 34526.7196 26900.2148 83348.6448 70949.0393 59593.5144 74905.0016 50519.1964 59738.0104 2508317.6946 198115.8749 79056.2744 70245.876 70302.3125 70302.3125 40314.3301 131299.6211 57390.8756 81619.4135 197957.1715 109206.1329 52972.3456 102508.7953 141730.2175 41945.6919 135798.2256 99139.9526 97018.1418 61868.9772 57916.4427 157363.3154 63775.2131 86120.7738 227290140 glucoamylase Carbon Cycling Carbon degradation Starch Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 5692.3921 4496.7206 3890.4299 2272.2004 5968.471 125345.1775 4693.2348 184171.9537 5229.92 4275.024 14876.406 8748.9288 17241.9555 5002.2869 10385.7081 3055.31 3355.6488 11221.3266 2995.6872 13468.5118 10386.4504 6244.6747 2421.4948 6551.9829 3724.6661 3966.9502 309299208 mannanase Carbon Cycling Carbon degradation Hemicellulose Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 48643.346 26390.007 28878.1225 13238.9261 30105.6267 30545.7189 15161.2609 36716.8731 14041.9572 15278.4971 27837.394 51614.4047 443503.6492 59848.765 30098.601 63119.5422 21784.6028 21784.6028 13527.6088 57815.0669 23826.3244 60160.0273 36826.0417 34990.7997 14435.959 22175.7703 27827.7715 17323.7319 39091.6651 29152.7728 30764.7554 16402.5772 38240.5491 27242.3606 12426.6557 48667.3274 296920732 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 4124.4618 6275.2733 206576010 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 221776.9166 115728.0603 24872.8807 54536.076 20753.8659 13632.4507 20854.7029 193796.9272 32444.4266 135985.3724 63488.2075 104421.8129 1964863.7533 75832.7287 39877.4468 78538.7326 75855.3741 75855.3741 181438.4612 71593.5567 208713.9958 271253.3626 99486.7278 53252.6919 41027.9594 48883.9896 53633.5093 30934.0021 112891.1332 58251.7557 64120.8733 26574.4576 49620.7211 126782.7896 82213.6141 61274.9705 290961026 amyA Carbon Cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 10927.866 8683.8821 6673.3786 3148.0481 2712.7342 4304.8611 4242.1457 3035.8614 4020.123 4151.938 6013.2537 6013.2537 4447.4738 3755.8353 10837.1457 6015.6326 27402.7065 11139.4062 3090.3094 14650.8491 3236.2856 9303.5777 5950.5882 4906.1367 3837.9905 9666.3243 3434.5107 88702562 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 5027.4447 5026.402 3459.8478 13850.4929 2599.3688 3589.814 4991.9117 4268.6222 686183.705 4771.2942 3319.2602 38385.82 6619.5213 6619.5213 7321.0153 7566.4959 3556.2584 95290.2923 6910.389 5370.1254 66366.11 5248.5634 3737.6507 9874.7682 6051.6436 8201.0169 3422.1789 19622.4212 3325.9609 4253.6377 294037.7483 17431447 narg Nitrogen Denitrification NA Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 24024.9034 20280.9141 17883.6135 20362.4412 11226.7831 15180.9727 15792.6217 9222.5456 14430.5212 18311.6786 12473.0843 359931.6566 19340.007 19793.0163 10540.1304 31294.0724 31294.0724 10863.2149 23758.6456 18158.9707 17010.3114 27308.0037 43626.9656 16346.4965 11502.7058 20567.402 13424.4918 36558.2357 16143.744 31642.6788 11456.1583 17142.8209 23182.1278 13015.7219 23962.586 211590738 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 84183.1122 17947.5655 402271696 cmci Organic Remediation Aromatics Other aromatics Klebsiella sp. OBRC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 6202.0074 42428.7583 12455.4406 5771.7602 11435.4268 8146.9876 4653.6108 6051.2037 14305.5249 293283.6871 8121.103 17798.9233 15559.0441 27243.0215 27243.0215 3721.6675 24627.853 8463.9103 14854.2948 92990.5978 5060.0853 5152.966 19238.0342 17173.0138 22602.7242 8118.8743 11859.3276 5839.8205 8450.8641 10753.459 15888.1024 8137.8071 319742705 amyA Carbon Cycling Carbon degradation Starch Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 9746.0659 5087.7507 8866.2787 5955.9782 2840.141 7477.6803 17718.8866 5100.6209 157406.7709 7244.1812 4434.1155 9283.8875 2462.1113 2462.1113 4359.6002 11574.2723 7806.5692 10723.8298 9958.9518 10717.8905 3990.0672 3990.9676 8424.7852 4822.521 14268.6779 3715.8147 10321.9753 4007.9229 6742.1883 6918.4524 4729.2189 8378.3206 133912674 pcag Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 6948.8972 16597.831 9167.4435 5582.3612 4402.7377 2683.3551 6351.1474 10155.5611 151939785 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 24085.9808 11284.537 5267.0756 5980.7767 4616.3878 12841.4124 11085.2529 21403.5291 9416.354 162386.7773 13523.9754 19418.1673 6747.1802 5269.1006 5269.1006 7220.7532 20490.0114 9307.6842 626553.4624 13014.7947 15855.2389 4798.0303 7050.5227 12864.0374 5824.8651 27054.9716 17583.8303 18416.2759 4766.3194 9333.3727 9021.342 7510.7844 12865.9129 390452513 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 15260.7343 6664.8072 15793.3311 15537.234 10962.8961 9158.5539 12226.7084 24509.4735 7623.2722 252324.7766 18232.0484 12377.507 10049.634 5931.8491 5931.8491 11437.0516 21726.8467 15685.8395 14777.8552 18709.4173 24008.1796 8677.2923 7085.751 27550.2947 6759.4511 31621.9146 17299.867 17989.9263 9059.5271 11063.4657 10512.2741 6610.039 23205.9101 422314525 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6475.8384 6740.3888 5421.3197 14885.1194 4807.6353 3774.1247 2217.6347 10008.67 12022.6145 6467.4895 113167.0634 8771.8002 5880.5502 9481.288 5518.988 5518.988 6605.3049 13889.2784 7761.1291 7081.8817 13472.5866 9723.3589 4191.5322 22923.9469 8831.6823 4970.8208 17147.13 5851.953 9672.5829 5859.1238 6613.2404 6205.064 13926.57 9419.3365 373549418 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 110714.8704 69158.1067 48022.7983 25761.6309 49659.3872 37512.5788 59418.836 85397.6976 118910.7711 164205.2798 136973.4012 94642.1177 1909393.6163 80399.799 189109.5757 335856.17 106949.0172 106949.0172 154092.775 232630.6394 84139.4905 266544.0571 425040.1747 248271.3391 81109.0694 150152.956 85548.4535 83548.408 189289.809 91009.8528 116092.3516 50005.5358 89584.536 144391.9779 107740.9893 138274.5935 33469597 aoxb Metal Homeostasis Arsenic Detoxification Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 9291.9858 6655.7412 8024.222 5089.3088 20603.8431 7226.6122 3159.4495 6928.7509 6775.9984 3651.2218 167673.8872 12679.5815 7248.1243 8181.637 3229.4795 3229.4795 7253.1689 13795.5188 11147.2954 469912.9391 12003.074 10224.0827 5157.6204 6325.0793 17718.3835 6247.9288 17170.5583 14073.2599 16630.2322 6743.7368 5790.8865 7811.5029 5494.5991 13800.4549 222452549 arsc Metal Homeostasis Arsenic Detoxification Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9906.8982 349572.543 8655.4273 7041.978 8129.5252 9426.1077 3973.3013 4941.916 14814.2684 6443.7599 127032.3743 7038.2491 5020.4348 11709.1361 4219.0698 4219.0698 4873.1279 9293.0114 11834.5333 8717.2863 28584.9714 9559.0989 4699.5556 4098.8396 9371.1903 6490.4488 22874.3502 7051.6301 9392.0108 4858.3852 4524.2965 7368.9241 5527.1968 9456.0418 373234604 ara Carbon Cycling Carbon degradation Hemicellulose Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 7778.6768 10962.063 13330.9643 4715.2217 3862.9239 6323.3592 4706.2724 7124.7505 6519.2748 4274.4784 144864.8735 8369.0115 5471.3607 4649.2241 4025.2207 4025.2207 3974.5986 16342.5259 10290.184 5069.5357 9583.957 8710.3268 3019.461 5019.7501 13581.5143 10349.0131 14209.0659 11947.1127 9440.6075 8979.8839 4836.7003 4907.6679 5250.2855 8096.191 145305110 chitinase Carbon Cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 27251.5034 10662.2084 896965.2726 25214.9308 9754.857 19937.106 12493.8456 18268.9507 6871.9343 6456.6756 7675.3543 216534.7067 18508.8709 24534.8051 50701.2817 25307.0619 25307.0619 3672.7707 194071.0556 7628.1816 18175.838 61461.8613 5809.8256 7371.5473 54168.6129 5464.5549 158722.964 62494.9261 84761.6947 5519.9095 10329.8224 9802.3965 8599.0896 46699.296 291436747 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 22843.9705 18863.4245 53534.3395 46089.5639 40195.3981 67602.2871 26494.5875 22770.1705 11697.2828 19244.6347 26808.8753 21003.168 538577.4329 30003.8762 35698.5558 28099.2295 25614.9094 25614.9094 17139.6834 43026.0931 23045.5068 22810.3072 26814.2394 414434.5292 16298.5128 15421.1127 31743.8027 21399.3461 53773.1644 21659.6225 45351.4103 19057.184 26808.339 18206.5103 14282.7387 40224.1048 363993687 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus subsp. bolletii BD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 4639.7922 15094.747 6769.7304 2343.9647 11378.1305 5065.4013 7508.8741 3243.1692 336305562 RgaE Carbon Cycling Carbon degradation Pectin Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 46251.8734 36261.5201 52050.7354 51755.8969 51572.5702 65067.7557 66770.2521 144433.7319 28336.004 34367.0414 50044.4491 24148.608 945836.3839 41405.4009 42658.81 50799.8559 50297.8785 50297.8785 24054.8839 42619.1858 28442.3509 40282.9162 66432.9878 51281.0725 24350.7631 22537.9831 38724.5425 19650.4456 66437.4742 44117.3306 47362.7001 21932.8867 32601.8747 21857.2005 20483.6567 65625.588 6523535 nifh Nitrogen Nitrogen fixation NA uncultured microorganism SN-13 94993.3453 54219.2427 77171.0375 347644.8071 46968.3967 44186.8496 41351.3202 94922.8519 38197.2348 81698.4125 81029.9892 50081.7547 1226264.8444 79926.6723 157622.9807 97593.8941 141602.1233 141602.1233 38478.482 69632.5791 78115.4373 90122.0051 85599.4246 63282.9774 37112.3132 56125.0001 81564.9593 55357.5301 146897.3635 63911.5673 83535.3495 49864.5682 83052.3645 167593.1824 33460.9971 136520.465 33385703 nifh Nitrogen Nitrogen fixation NA Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 44047.9485 505844.0473 27247.1109 114611.5439 18503.519 46325.0315 27603.7282 36105.3486 36070.5967 40221.1437 59029.6656 937720.9539 35655.0129 60176.4128 68967.2458 66934.8874 66934.8874 54931.8264 52674.806 70160.6661 1455427.74 75535.0977 129739.6572 33183.309 23940.2322 48028.0304 168879.9294 94134.7823 120815.6281 79422.8588 37724.6676 26776.6552 21494.7137 17107.6566 249123.3052 385277758 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8428.0095 12911.5363 5134.2498 39812.4944 10801.374 11405.4522 11782.0216 4298.1144 10104.5462 6134.0792 6127.5846 368926.3144 9307.2408 14333.2516 26461.5139 11791.2576 11791.2576 4995.0308 28342.7468 14421.1996 7480.2613 19042.4052 8107.5885 6900.449 13906.2549 40454.9683 4521.9704 22061.5931 9669.4545 16701.7003 4015.7418 8397.5963 9820.1552 3453.3988 12869.8677 305411657 rgl Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 4639.6149 4994.5098 4539.5888 2405.8872 80516.6012 3577.6114 3794.5262 5644.2369 3630.7065 4481.8265 4699.2529 18472.5101 4998.4034 1999.8264 8019.0455 6575.2541 3004.3197 4852.811 5697.3358 29652448 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 53391.8429 50236.0217 11673.742 43803.9286 51940.5373 12750.1484 19561.1576 31314.2024 46264.8415 25365.9011 30576.5278 28602.8167 470370.8181 30253.0134 38111.8046 38391.9027 26366.843 26366.843 22637.2318 45297.6074 34190.9881 82678.7854 48819.347 24281.6975 18272.6177 32885.8028 49298.9864 33058.0678 81289.3292 43448.7625 40629.3208 21378.4644 50688.2284 43058.3064 27790.1925 174843.6927 4633555 nosz Nitrogen Denitrification NA uncultured bacterium ProB superkingdom:Bacteria; 6805.585 22241.7706 18128.5521 8193.6539 2897.4429 48190.5852 5612.5344 174466.1163 10566.1203 6583.1834 6148.6471 8040.1316 8040.1316 2547.7904 9531.7107 5172.7453 5461.2767 120542.2954 2752.3824 12307.8333 8434.8792 10615.1868 18469.6828 7639.2865 12228.5647 6693.7359 5737.2968 7815.8103 2838.3512 5749.2632 121583358 ophc Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 11885.2729 5611.288 7827.2923 33027.7222 5272.9232 13616.298 17720.7325 109066.2445 19321.3905 13550.8251 41458.3033 5623247.7006 24366.0718 18371.9565 18045.553 18770.6965 18770.6965 10342.5551 19061.7932 17451.0747 18233.9005 19931.9261 31915.4547 8863.0721 21412.4143 23857.6498 18241.1027 32634.3491 26070.9742 19228.097 10711.4682 13435.9981 72751.339 47689.4615 14968.2778 365911653 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Klebsiella oxytoca KCTC 1686 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 160163.2123 50651.4356 6819.0315 12132.6521 36582.1794 10243.3916 97107.1977 21380.912 9939.6032 14172.9317 293653.3964 15916.1748 22300.1967 11107.8001 26996.8374 26996.8374 11514.1192 22413.0646 8151.372 10119.0994 28903.2797 186006.8368 15039.8725 16231.4089 15634.0775 14856.058 39764.019 6633.6974 25228.77 6360.1129 14773.4441 18402.7497 20779.5061 21949.2965 153798884 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 32282.7505 292433.3361 25354.3036 292811.2598 2889.0463 30162.805 10195.101 11751.3827 24000.3432 12050.2199 149122.9474 15114.12 15149.8803 23377.8376 32530.7969 32530.7969 6105.0986 21576.027 8867.8476 10659.9235 26319.8644 18369.6538 14327.2624 18390.495 17531.4816 13688.2755 47351.7889 32820.125 17875.3578 7265.6074 13160.9611 13618.8836 39674.6212 35195.7213 342316494 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 379363.012 11860.4692 350355.9959 106974.9045 671465.2478 111487.4599 222053.4893 219926.8953 91092.6131 111992.0108 178473.7829 132024.6973 3437502.9267 242363.8541 311847.7275 368050.625 199088.9342 199088.9342 213994.0948 167186.0957 195641.3836 234276.5739 186439.0905 134697.9138 88942.3824 159570.9575 260541.5932 213122.5864 424271.0306 256135.4988 239892.0843 146844.1081 279727.9473 173173.2234 212016.1701 171519.2096 376168466 cda Carbon Cycling Carbon degradation Starch Lactobacillus gastricus PS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 11787.4491 10696.1915 1990.6596 12248.4434 3030.4026 9222.9097 2445.8384 7434.2001 7344.5784 10698.7009 4721.5695 4721.5695 3264.7771 21391.4984 11365.9499 7541.3581 7276.756 3297.8961 4440.4806 12925.3562 4935.485 22517.9108 9137.2414 9391.1049 4519.347 7275.6196 9122.0503 3910.5593 302547729 cmci Organic Remediation Aromatics Other aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 8248.1291 14334.5785 9339.6143 3040.9053 6255.402 4762.2204 16877.8659 4988.5194 107054.2839 42904.0811 5755.5081 7266.9261 5227.8448 5227.8448 4417.3501 9708.192 10101.9063 5059.6631 6172.2545 4839.5076 2691.6062 7313.3861 9725.4549 4089.478 17660.1724 7752.2868 23434.2451 6606.2017 4688.6704 7749.8297 75104.5739 372281874 alkb Organic Remediation Other Hydrocarbons NA Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 16093.5242 6941.9157 22720.3821 54352.73 26145.5702 13384.3081 12911.0979 5362.2636 11437.2633 16662.5861 9747.1956 547970.2577 17543.4419 23294.8274 40034.3808 14504.385 14504.385 24158.447 23570.2112 18687.0484 12534.9694 23660.2671 13393.452 6909.056 13018.0407 35070.6223 9903.4039 35117.0537 27505.3573 28745.1637 10836.7592 17817.3289 18282.6446 18979.8732 21108.1971 53987084 urec Nitrogen Ammonification NA Pseudomonas sp. T02-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 64346.7176 11516.0356 27737.9515 3335.975 3066.8766 3066.8766 3075.8288 7125.5447 357200839 cda Carbon Cycling Carbon degradation Starch Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 6047.2612 6461.4884 4991.5426 10459.7263 4232.2449 5621.3739 3734.2234 4663.8165 4326.3146 6570.0004 6570.0004 7920.3362 3868.744 4704.3496 7851.5771 11067.0229 5965.7777 6720.6682 2141.5286 4525.3244 7939.0656 3027.9034 166710199 linb Organic Remediation Pesticides related compound NA Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 12985.4086 95750.8712 8284.414 13097.5149 5177.6107 10844.2846 8978.8058 7266.7804 19232.4677 13628.836 7936.5248 7936.5248 6682.4565 92368.2345 5239.5878 8270.3843 3177.6626 5152.2147 10031.925 20749.5087 176178.0411 4544.9955 11861.4728 15509.2039 17816.0006 26970.0655 5682.3811 36850.3464 319762524 mer Metal Homeostasis Mercury Detoxification Alicycliphilus denitrificans BC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 9431.922 26108.6163 6293.7372 28241.2453 7575.1843 18375.9623 11257.7117 13914.4012 4561.0016 5843.6888 5619.1399 5619.1399 6409.8971 14218.3687 6689.2025 16243.5822 6968.6872 6916.4441 7866.5876 14740.933 8958.6912 15064.884 25685.3851 19930.4992 9600.8575 5262.3409 6298.4719 16753.9405 15533.9516 7230.599 218564166 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5136.4929 4918.1565 3358.8864 4117.2449 5442.2816 3119.8936 66349.0213 5598.948 6526.0115 25065.4601 7439.4265 7439.4265 133281.8021 7249.784 5338.7908 5462.3212 68250353 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 24851.6926 13493.2231 13842.8895 35391.9038 8172.4419 24880.9099 12578.11 4482.662 11998.7801 28123.871 21346.018 380220.1424 14426.107 41862.1978 29619.8599 12809.1037 12809.1037 7009.2749 29533.8196 39216.9288 51370.9729 39218.388 28945.1373 12159.6501 24482.173 40063.2395 47321.6364 41227.8999 30764.1926 19246.7392 9235.8998 17021.293 21352.0968 23766.0192 10392.118 45386231 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 619828.2102 42605.4689 54636.7844 62734.7358 6706.2474 55741.5281 48427.9494 54648.3032 74642.7432 41025.4725 42980.0472 1193819.8816 66746.8102 40186.3552 119992.3402 63771.9843 63771.9843 64936.1538 136078.0906 53531.4813 68713.3882 237733.5032 303905.6195 37130.9261 70435.197 56531.4748 55655.213 135428.6925 96141.9357 82775.8383 24236.3981 46031.563 100500.931 30288.8541 99961.2754 8515791 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 10424.1089 2963.4773 4541.8177 3316.615 87546.0552 6219.5798 6661.2272 3432.1134 6872.8783 5329.6963 5336.559 4011.1462 2828.6066 2473.0427 6686.6417 3798.3305 5951.15 2870.3083 4023.8504 6971.6457 116265518 urec Nitrogen Ammonification NA Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 12876.1893 10644.5397 6866.1477 4668.3673 3612.3391 3727.6468 5472.6908 10055.4425 3451.5242 110747.9305 7144.1296 7265.813 7997.6308 3464.7489 3464.7489 7693.0209 10854.674 7911.0654 7641.2965 10185.5049 11691.4149 6159.0831 3336.4314 8284.0445 2973.1451 16947.6103 7525.1724 10249.993 3978.3878 4796.8114 6098.4624 4202.5261 9648.6865 83361600 nosz Nitrogen Denitrification NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 24823.6063 77254.83 56127.0593 59845.6713 27202.751 15226.6478 32448.4819 9861.9621 23827.9713 32263.2149 13945.7931 665396.2688 24217.7492 22839.3845 61820.9723 40323.5938 40323.5938 12651.659 51627.2179 37072.18 12454.3253 24592.0016 21798.5396 18231.6498 14733.8582 30984.5974 23052.5539 39630.1177 41556.448 41995.5022 12459.9582 17978.9235 21164.2815 34609.6414 19800.9931 254416369 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 4898.9864 13319.1543 4518.8858 2907.0086 3905.1767 6476.8269 4921.8829 79016.8864 131124.3747 4100.265 6923.904 22441.4335 3004.0015 3004.0015 4661.2623 12369.6148 7739.3333 20269.5682 11821.0707 5276.9685 3582.2514 4865.852 10746.5735 3981.3304 82444.2884 9125.7022 14362.6147 4063.0008 5123.7251 10141.4077 3738.5841 9591.7631 62003541 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11262.6772 16353.8851 5931.9934 8858.8928 5157.4246 10511.6626 9857.4946 9168.5304 221245.5846 9119.7238 7369.8636 5483.667 5441.3945 5441.3945 4447.0575 31840.5446 12681.8812 65511.8375 39332.839 6293.155 3732.9535 5199.7093 13267.2756 6274.1452 24585.9977 11773.2686 14559.9936 7446.6812 10713.7237 8253.2609 5929.1973 14115.6067 71556174 nitro Organic Remediation Others NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 107913.038 10190.2438 35675.5499 684752.472 314846.2341 30324.6534 64351.964 105076.5818 30273.0304 58247.5789 108370.1448 99588.2243 9896736.5228 61317.0864 69256.1688 103328.5434 79513.5271 79513.5271 108446.5353 111504.7249 66766.4973 45622.3958 510547.9515 1557920.1984 76239.2078 55840.5442 190277.0394 213961.2811 899091.5949 275488.8643 556456.6728 62429.2624 245368.2539 53090.9846 67046.1936 80249.8063 239823689 dehh109 Organic Remediation Chlorinated solvents NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 79524.9555 129556.3308 7443.0963 48834.4166 43347.1256 10499.895 12325.2376 11875.2252 17321.4193 10186.2961 8850.9602 257400.1293 7158.7623 15417.6372 20574.1958 24315.4341 24315.4341 455846.172 30784.7735 16414.533 12660.0673 11370.9943 6551.563 9119.23 8648.1851 16896.2006 9066.2759 37570.5371 21094.9775 62168.3969 11477.2631 10520.8238 24476.3357 14444.6931 19154.3742 221738036 nasa Nitrogen Assimilatory N reduction NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 11330.181 12126.7665 31142.9294 19863.4481 65544.5705 7028.1685 8848.2579 7169.2354 5758.7814 11435.5803 10100.2707 126989.4233 5927.9205 21349.2281 17351.258 11689.3983 11689.3983 6806.6139 18892.8919 9668.923 12654.0752 17647.7783 20725.1541 9689.1686 15540.4186 9830.4562 31389.7965 24178.5271 30591.132 18510.5285 14041.1431 8463.3284 11256.1398 5412.3116 9321.0688 148256352 b_lactamase Virulence Antibiotic resistance Degradation Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 182860.783 37076.7354 64504.0954 100789.5169 175809.9482 102120.5645 119359.8806 135085.3841 33635.2844 90132.9108 129064.0282 121794.5477 1731283.3586 86635.9682 101558.7573 116011.9579 116011.9579 98312.064 107336.4641 77135.3993 74187.066 118297.3359 46351.7463 80863.2169 102650.6483 134364.5526 158286.3627 1084942.0591 333500.0945 174950.3461 39898.3183 106520.3668 134744.4707 86217.0067 283139.4711 309261243 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verrucomicrobiaceae bacterium CR28 UNDR-2009 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae; 31240.7581 50419.3498 107731.6603 35180.6826 9728.669 66822.2493 106098.692 10415.237 44583.05 147109.5365 58662.2807 1162123.902 67399.0368 44909.0631 52967.3864 44780.7109 44780.7109 346391.1522 64130.0288 53790.5363 51624.0246 94887.3738 48548.1272 64067.5362 23466.5118 83775.6553 48830.9764 95566.2762 81055.9135 74106.9285 34776.2744 100309.7395 56744.1241 25659.9758 269575.4867 294814796 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 53365.3195 37829.6785 99101.3766 40581.5388 8335.3793 38131.0035 70766.9775 127484.9201 35957.4742 45760.5402 40892.5955 6062570.4539 57144.8242 68754.8019 57661.0236 49772.1033 49772.1033 36339.9516 63105.8606 30915.316 133456.6718 74947.9751 55482.7142 35925.412 63047.4535 113174.938 52874.5376 116124.9494 96611.1838 72766.139 26847.8327 47983.1842 89153.4014 41024.9715 47385.8092 158138779 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7847.939 9087.8453 6386.1135 6922.1152 5019.0372 4422.7095 6700.9501 7194.6658 7088.2661 3377.2811 145106.0865 10870.7166 5717.9477 5337.8393 3354.0034 3354.0034 5932.8121 16287.1661 6767.4004 14027.9347 9414.1503 10876.6806 3774.939 4485.3707 11039.6982 3572.9509 13396.066 8792.0533 10730.7927 4421.451 7502.0802 5771.3728 4462.7581 14531.443 41395143 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 6205.4803 21828.6001 32185.7915 4573.1306 149243872 protease_serine_fungi Carbon Cycling Carbon degradation protein Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 7396.4627 4365.8736 3859.329 5839.1915 4029.3228 4043.4301 7566.3172 3408.2119 155110.4653 7023.0624 8697.6493 6695.7957 3190.7149 3190.7149 6807.589 13434.1806 8007.2834 6697.4285 14184.6326 9403.7146 5471.3624 3880.4363 12134.0549 3096.6671 21434.3756 9211.3614 11612.3455 7356.9847 6555.6927 8736.3166 3855.3752 11208.2251 10954730 FBPase Carbon Cycling Carbon fixation Calvin cycle Agrobacterium rhizogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 20607.7837 4212.5525 4524.0409 6708.3854 4211.9123 20381.3793 6367.7921 4333.3611 98849.3109 4708.6848 7021.9624 3775.2264 3325.8506 3325.8506 3522.9895 9283.8998 7342.9525 7938.9324 11331.3731 33200.3411 5942.4883 5396.0505 8349.5285 4976.7482 14756.7519 9875.8244 9148.6143 5036.3823 9129.7382 5151.5081 5717.2527 10405.3956 336453287 hao Nitrogen Nitrification NA Helicobacter bizzozeronii CIII-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 195961.5439 11342.5798 181934.927 106388.7494 164094.5285 120091.1403 79804.7303 207429.309 73170.628 72351.188 94735.1349 90221.8415 2159601.1214 107698.4409 107564.6427 345617.7857 147938.3396 147938.3396 57727.7072 286930.3935 96683.9094 188094.9522 112373.2395 96895.0991 69777.1298 96634.5911 191081.8288 123932.9035 289489.947 136650.6979 198295.8052 64951.9997 90186.0534 180019.3623 62730.8386 98389.7381 88818066 glucoamylase Carbon Cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 8768.6086 36752.4058 3501.3167 4693.5355 4459.5385 7200.367 4584.3828 212771.7443 6342.2263 8147.5834 3238.8092 3238.8092 3218.4973 15921.0359 7553.8208 7544.3088 9311.2595 6046.896 4145.6899 4662.8915 14800.5286 4119.7019 14663.0421 5113.7556 16230.9094 3985.0782 6551.328 6555.7996 4115.1431 6148.0376 404496998 ben_bcla virulence NA NA Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 32707.3524 32841.4653 7018.2777 29179.7002 16096.1719 11447.7551 13859.7657 9815.4249 40180.5359 17939.3429 27088.2048 192191.3691 23236.2727 43489.7045 53130.4544 31812.6455 31812.6455 10249.1337 139227.904 35364.1188 29656.082 20001.4834 85009.1882 13003.9287 20858.8799 26177.8215 22168.8024 592081.1091 52749.1628 23463.9398 8060.9094 17475.9747 21766.2668 7533.692 22066.9883 229750937 mannanase Carbon Cycling Carbon degradation Hemicellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 117944.3868 321998.2201 70887.4831 50310.4845 54974.1981 14315.9964 19941.6856 54024.5689 46707.2981 27479.9499 61838.0405 101814.7023 643842.8848 59736.507 134296.3134 69935.9714 77794.4297 77794.4297 36988.399 70263.7481 52294.6976 189938.9665 138104.1061 38937.9842 47837.6167 63972.6101 39771.8066 35626.3969 200354.0239 92268.0951 81201.828 26767.4877 70801.8597 48565.9428 26987.6119 70642.6982 70985404 phospholipase_B_fungi virulence degradation NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 4849.309 3185.8889 2219.0263 4781.4419 7772.6404 2613.9364 103358.6935 5025.9552 5921.7849 3975.5125 2957.4599 2957.4599 3479.6501 8535.3351 5512.9132 7049.6075 8454.8713 9008.3972 2621.8483 4096.2497 7713.0276 5962.6771 2627.1435 4206.4562 3698.1475 2471.2876 8650.7041 240015518 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17744.7019 9700.5109 19560.6856 60142.6955 38678.4786 13851.8342 19033.2473 8368.2045 73835.2336 9008.4835 14843.4157 15568.0031 10615.7516 10615.7516 4225.4917 19353.0823 9864.7258 9875.2246 9037.2878 9876.9959 6596.2695 6003.4501 30592.3009 7478.0047 33846.2965 7528.9421 12981.4415 7285.4838 6050.1956 10862.4243 5125.5 11736.8442 114326873 ppx Phosphorus Polyphosphate degradation NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 36196.6174 886891.983 29033.4352 83774.4634 57712.055 4325.2067 4325.2067 12349.2287 50506.6593 4329.3613 6078.4063 4808.2046 2940.1616 24081.7221 7513.9805 3808.8458 12457.5723 5703.3101 2365.9005 6624271 xylg Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 4770.1832 66280.4243 9253.6444 15510.5178 2792.7743 4185.7692 4066.4251 5549.1667 91204.2758 6450.5185 6220.9954 6220.9954 4341.1589 21957.8256 7918.3973 9779.1579 7105.7333 4526.3031 2588.8877 4708.6769 5699.2208 10253.9634 8549.4281 6343.0032 12515.1125 2232.8515 6468.3706 4841.1672 2353.0314 159128674 invertase_fungi Carbon Cycling Carbon degradation sucrose Aspergillus fumigatus A1163 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 4367.4144 9829.4327 4038.5752 2466.0221 67378.745 124758.5999 4184.2631 4570.0357 2136.9943 56312952 cysI Sulfur Other NA Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 42835.957 61690.4941 30047.1957 47351.3487 20442.8078 23166.2184 43198.9052 53098.6609 35880.7124 32355.252 40507.0766 41829.2543 1171886.2008 49663.9827 59026.7272 110059.3981 32793.8642 32793.8642 32804.3753 55306.8312 43285.2328 38562.7432 58558.2771 91212.4704 32846.1756 20504.3702 47726.21 51045.0184 182043.4131 55111.9417 86756.766 38577.2338 29951.1959 33615.7451 34457.413 60692.1262 85693864 mer Metal Homeostasis Mercury Detoxification Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 7767.549 6700.6484 5986.8548 2764.8956 14522.8765 6383.675 14383.8694 6304.6368 12609.9584 207316.6688 8054.6595 17649.6114 11054.0276 8528.3086 8528.3086 4619.2787 9310.4232 9984.8878 7300.8153 4899.2197 5716.7192 2990.444 4901.0366 7826.4871 20951.1061 12948.6955 12194.0188 13394.7284 50367.2977 4966.1448 16640.9291 7058.2702 6205.7737 296426499 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 16550.3928 8791.236 10591.0802 11798.3505 5966.8053 6997.3387 8551.9134 9848.451 14381.969 4850.704 274958.6814 20566.2606 13997.2132 10284.839 4678.6219 4678.6219 7877.9907 21947.0842 12061.4051 15409.1867 18223.0215 14314.2759 8075.2002 8350.7977 16272.374 7061.3851 26867.6567 11538.3237 22848.7076 6775.4715 9234.3671 8978.3331 5482.6573 19859.3998 68510354 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7706.0766 50440.6065 6797.2697 7015.9633 2971.12 9479.7411 3367.4916 4882.9156 7929.0929 5069.7461 108440.7948 9240.1444 11382.767 8400.6312 10891.158 10891.158 10491.8579 5486.3231 4271.1934 8459.1085 78659.5193 3641.2588 4580.7189 10845.5226 4432.7073 13896.4997 9085.9047 10137.725 5051.1492 7835.4692 5498.4272 2683.6965 31863.3456 334335677 ara Carbon Cycling Carbon degradation Hemicellulose Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 206665.5681 27132.1216 56877.9546 54158.4179 55932.8671 16409 77804.2955 113052.9663 26467.4344 40303.4106 63049.6812 26427.8037 973453.865 54127.7988 43149.3736 43202.189 36225.4103 36225.4103 28922.1588 53073.5034 42825.8588 53526.6421 266553.9752 57461.2113 23564.2436 31227.5397 53104.0583 32428.3155 102621.7039 58470.0537 55824.7762 28558.9195 41042.7095 33637.9722 155227.1551 76756.2919 398859428 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM79 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 82707.4439 3822389.9952 1123609.8661 14318.029 16850.0151 59814.5467 25996.1231 37308.0344 22232.8156 43624.6091 42599.7267 389300.5367 141534.7218 121652.1001 30318.0345 93478.3996 93478.3996 16800.0892 58420.5936 35741.7832 36447.1313 54933.4648 29349.1429 55811.5801 28136.1744 35769.5772 27893.4422 152334.0852 34501.7008 53254.7825 21480.0301 34230.175 26133.043 16458.7321 717246.5835 118168209 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7128.712 8093.3641 8168.6068 11266.8836 4367.4934 5831.1601 2730.4005 5077.8422 7914.4945 36769.4779 155429.645 12324.4375 25292.5777 4719.0148 3788.151 3788.151 6055.6309 13339.4515 9989.5538 6894.0853 11590.6684 4655.9584 5177.2413 4907.9578 10005.3273 13739.2521 16255.3717 10896.2133 12879.2777 5480.6159 8192.2822 9787.3068 6864.5602 12621.2714 323365188 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 18799.3665 9317.0544 15199.0991 12337.7605 4246.1812 13058.6149 11303.0726 5462.7261 13078.6173 14865.9018 7974.4473 324731.8063 17371.835 17830.2166 11156.7164 10353.2092 10353.2092 12526.3681 20673.1051 15601.6499 22573.3733 15001.321 24081.7379 9220.0145 9720.717 27298.7867 8402.373 29931.7585 21715.9559 28831.8002 8826.165 12898.034 12038.0025 8812.5436 35825.3076 78093548 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 88025.6173 15892.0248 15906.8182 51150.5478 7322.6043 8763.4327 24350.4585 17710.7023 24038.435 22944.3221 26450.948 353317.9181 111965.1427 21088.2874 21928.4206 11255.9648 11255.9648 19699.5115 44552.9134 27552.4238 18289.3082 28682.9559 22386.6256 18071.8825 9635.7423 25297.34 25987.6662 49815.6879 53324.0433 47078.9786 11909.6784 35138.0387 23262.8788 40054.293 21475.2248 56710238 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5916.7052 89320.6418 4813.7704 7158.2769 5711.1197 10225.247 9744.061 2709.6183 143710.881 8421.883 18397.2312 5184.5256 5184.5256 8395.9254 9468.6974 9639.3721 7451.2364 12879.2766 168358.9246 4781.7603 8961.6812 10853.2583 5403.5384 22300.0828 11385.2058 10749.9281 7312.6664 5490.6629 6512.931 5240.8977 9474.4425 255280482 amyA Carbon Cycling Carbon degradation Starch Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 15532.0872 8793.0187 9610.0894 31688.3724 3731.2272 14032.5804 5610.6025 12583.7922 23924.4143 11613.0584 512707.3141 14113.0918 21653.9433 15880.0002 6442.9151 6442.9151 7996.4612 29309.6314 14872.7849 31325.4575 16108.5385 10869.1201 9502.9495 9486.814 16262.38 7091.5791 34335.4902 21579.4805 23675.6592 22817.42 27780.8237 27730.2844 6617.0766 25932.6873 170935128 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 15680.2232 11214.4279 13044.9033 12676.3384 4704.6152 8482.1002 9832.4657 6931.5756 25281.0641 14644.4564 5452.3851 204784.2522 15463.1566 12500.8257 9218.619 6288.6858 6288.6858 8919.7552 14245.6454 13665.9417 19512.1114 14761.4071 22954.3031 6672.1087 6979.5752 15066.5514 6905.1784 30710.7494 11723.5741 17661.6673 7481.0445 9734.6532 9907.6106 6219.9907 21281.0656 29466008 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30583.6496 17430.542 325696.7587 27348.7313 70864.4703 19913.6489 26831.2626 21501.4876 15729.7317 26174.8863 24647.2638 24383.6409 2773937.7227 35236.7066 60554.3068 34767.306 32232.6871 32232.6871 14999.0467 44153.0107 22358.0375 39254.9657 48099.7112 162920.9765 20970.3011 41505.9121 50717.1512 27568.8987 80130.189 43880.6826 41179.998 33235.8347 59584.3583 18764.4051 17055.0799 51635.2758 134077947 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 322179.3485 5128.0331 2539.0934 8190.6737 3513.7267 4651.9147 2486.8415 2009.6244 3478.3658 114538697 atzb Organic Remediation Herbicides related compound NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 55683.7633 11092.6961 32073.9017 24818.3565 6979.8367 17333.8316 23331.1382 66698.7891 12257.5515 13269.0257 330624.5913 14805.2245 20199.9576 18973.1975 45260.5236 45260.5236 4397.7803 19749.6586 11170.4432 18034.2774 11288.5294 8401.1653 5251.8884 12056.2716 21965.1021 7179.5074 22724.0906 13865.124 17022.4165 16846.3155 16405.6269 178783.4154 6859.8944 10917.5576 114763281 exaa(moxf) Organic Remediation Chlorinated solvents NA Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 20191.4552 54832.4507 15326.0115 27352.4311 13920.7943 129045.4592 23986.4591 8391.7422 27833.2018 24035.5535 27803.5768 292562.9874 17747.8807 24043.7217 16961.8058 73090.1976 73090.1976 15591.8085 22036.007 17395.4987 83371.4599 18705.7617 30903.5045 11386.2732 15934.5569 18891.8588 39368.714 46872.5592 21889.3964 34503.9662 15804.2842 12782.0802 18830.8111 13231.5062 24735.3164 187982733 axe Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 71114.5485 23823.5818 180401.1141 63592.1373 11981.475 6710.4445 35063.5089 7824.9736 19024.7568 53269.6075 28368.4993 948629.4402 37288.3333 38026.2344 40903.0918 49379.0072 49379.0072 37947.7703 92082.3908 23490.7193 24819.9529 53162.2537 24335.1887 18999.9622 31519.7611 40264.8884 52094.9267 74593.6895 49344.0362 58509.246 27068.62 48116.5941 52036.4223 18236.3833 154343.9687 89274948 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 19610.2038 12552.0747 11954.8716 15261.8826 8116.256 4604.862 8843.3095 9583.5114 26602.5801 27396.9875 17757.553 23160.9158 442658.2022 22371.7951 26111.8051 11531.3569 15567.0596 15567.0596 11495.0674 24998.4589 20665.0995 17106.5481 31184.3682 25508.4631 9869.9565 10220.2517 23319.2474 9270.44 273833.8441 15316.0017 20969.3235 8433.7435 10558.1127 15466.9716 9528.9185 24867.0476 302384570 amyA Carbon Cycling Carbon degradation Starch Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 4724.3334 4805.2432 5208.0083 3971.1376 2643.0608 66155.9548 3578.1883 3574.8772 5251.2328 7702.0867 4238.8008 4434.5593 4502.8496 5188.4232 3153.634 3036.1872 8682.7802 3473.3769 2527.5899 3949.9073 3526.4849 20165.2314 344338576 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5790.8536 6026.1055 9093.134 7520.07 6561.7222 4096.7451 3278.9993 4528.549 4877.353 2927.2978 105703.2326 6075.6065 7064.981 4916.1037 2192.7949 2192.7949 4588.7643 10663.2303 7493.7519 6341.1961 7356.9582 18282.0879 7307.8564 3141.5215 8975.0421 3922.8216 18521.2059 3857.5674 8781.0052 3874.4401 4538.1457 5878.1792 3286.9426 12229.953 323365180 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 102744.6682 34326.6417 44111.598 183471.8548 34165.5402 7576.6189 18252.2139 20585.2895 63876.9964 20528.6816 45775.1108 33388.4161 814692.6236 33047.7159 37548.1703 59505.1295 38878.5377 38878.5377 23083.064 66536.6556 37100.6473 31101.769 68634.9582 41596.23 55047.3408 24599.2551 36270.4825 56350.0819 87358.6163 34757.0804 43525.4745 22156.0749 74919.6287 38401.0894 16828.8659 59649.6202 163854562 cmci Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 16724.7161 15867.5856 7820.7175 74743.0652 12122.0282 30306.3528 61609.6994 9273.8383 10203.4557 27662.9122 21662.9405 239802.8006 40646.244 63107.5139 129224.1118 44777.8215 44777.8215 12399.9747 35651.9154 14297.9542 11965.9621 72253.4609 16232.843 10847.3404 30441.5291 23364.0922 53104.2779 73268.5018 36564.2565 33658.0075 10591.4472 64462.0219 23249.6823 12738.7845 15100.7268 7717204 nifh Nitrogen Nitrogen fixation NA Vibrio diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9770.8453 11758.0624 10184.5946 2622.3922 35632.8902 12103.699 21551.0501 9901.4696 87540.8798 11164.4492 5381.1359 4525.8245 5771.7155 5771.7155 4796.9865 13425.5896 8160.4473 4732.9652 7223.6303 6738.2944 4068.2063 7745.9888 38719.2612 4023.624 15657.4298 9240.3888 9554.1613 6394.4044 11501.2684 8655.6081 5108.1532 7422.7513 46448231 dsra Sulfur sulfite reduction NA Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 27443.6163 13000.7721 14576.649 39529.8484 20447.2237 19739.1535 14490.8559 10242.1778 25044.7563 38998.4319 18883.814 447255.1035 17300.2381 23085.8141 13520.6636 19826.2471 19826.2471 14704.1143 31259.3958 21306.8126 53539.6944 89834.3647 30166.4916 15882.6226 15188.8691 44377.4607 11402.3259 45583.7522 21847.7889 25643.9647 14112.9002 18156.7768 41118.0796 13015.9693 41921.7876 326947332 glucoamylase Carbon Cycling Carbon degradation Starch Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 36222.3398 24372.6535 27592.6618 39812.8628 47437.5326 10632.0823 33623.9143 29584.6479 17461.1055 125118.5093 32926.0224 18310.0754 845698.1441 54101.1745 39018.1364 43620.6467 27897.1137 27897.1137 23725.1727 40428.3814 34862.8785 42154.4 40871.6477 49792.9964 17796.4978 19733.9691 35663.6823 15053.0025 70261.1547 18002.1495 39558.8452 16703.2545 19833.1217 22769.5179 19128.8135 48891.8025 262085168 chnb Organic Remediation Other Hydrocarbons NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 14714.8134 31630.7012 12159.3035 17661.4479 4210.9814 4282.7174 26245.3183 8784.9029 6157.2695 115365.557 18130.5003 9118.9043 7204.6251 7204.6251 7442.5057 18082.8314 10540.9415 12344.9379 20966.2282 8612.0208 7404.4629 5332.8866 16905.5747 3950.0504 18106.2303 14095.0941 32414.5462 7851.5278 7772.2075 8932.4533 7298.0784 20271.4487 171193656 pgk Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 13258.2905 12207.5053 209583006 actin_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 8741.1421 9509.1405 4107.8402 4112.2338 4554.3408 25890.4167 11084.5577 4349.2373 196536.5354 10844.3762 8554.8431 13913.8336 3783.0821 3783.0821 5016.5656 19863.75 10237.9594 5788.7499 9255.2788 7231.4336 4739.1064 5419.4099 10463.3214 5125.7708 15429.1925 8595.2868 25233.5765 2652.5441 5398.0672 7083.4743 5324.298 11906.0943 303277295 nitrite_reductase_protist Nitrogen Assimilation NA Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 10350.7245 5044.7284 3554.9889 204554.2651 5112.8598 8755.9008 10126.35805 76250.5709 15275.0926 7475.9913 6132.5453 3407.1615 3407.1615 4986.5311 9690.4295 6357.5565 5493.1769 9318.7696 4078.655 5141.6372 5666.6344 18562.7926 3045.07295 15815.7089 7066.46955 14288.673 2525.8798 4524.4178 7627.3769 3340.5957 6382.1809 357387348 gdh Nitrogen Ammonification NA Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 284875.5113 99686.9864 29836.6986 152102.4253 26276.8821 337367.7034 155616.3866 70329.1572 128958.1967 433272.909 179089.3086 2328261.5312 100401.0622 143427.8361 532528.9461 148337.5284 148337.5284 141022.5635 201357.3876 135058.3179 124727.1607 152144.9283 179021.4664 139067.6904 151421.9104 276415.9108 122041.4886 329097.5836 136900.3314 211042.1616 82206.1716 129872.2543 280678.946 81845.7687 103307.3981 158112477 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 10022.9266 6165.0402 9360.7228 8603.924 10536.5986 5283.7277 15116.0911 7647.0868 9593.0024 5998.3554 122965.8351 7482.314 8499.0429 16858.1889 7102.4656 7102.4656 6922.6813 8640.8748 5332.0725 8514.1313 5557.9118 3806.3961 2782.186 4649.3887 10780.3272 4809.0656 19018.976 17721.4368 7137.6178 2842.5442 6925.2282 8833.9728 5580.1219 7363.6368 386839803 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 11620.8451 7391.8651 14882.5397 1990.5962 3835.4401 5941.2894 4846.6966 3885.9763 13509.3347 609482.1827 4761.7325 13071.9421 7950.0406 7950.0406 17634.0606 10492.2523 4738.5478 6451.5946 30949.8775 4511.5691 4887.1482 6920.9968 7141.2375 3563.6505 19434.9317 10681.2558 15023.5153 2801.0778 7760.7454 5210.7712 3590.4364 20814.1397 398066231 phn Organic Remediation Herbicides related compound NA Rhizobium sp. CF080 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 185278.9615 80364.3326 132457.5393 7962.3812 11343.1839 1973970.2571 35958.8496 27401.5207 29008.0825 51373.0613 129898.1167 34211.8063 3045846.3761 31301.9451 73452.5576 38495.6889 42592.3145 42592.3145 35588.6336 66827.6894 93168.2415 111769.213 82585.6982 46207.356 23152.2494 32487.2088 39810.7797 136587.743 167169.7444 46302.4583 50368.2507 17464.5352 31011.9808 52728.1142 48895.868 33376.8235 403745994 one_ring_23diox Organic Remediation Aromatics Other aromatics Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 4466.6381 8496.2677 5369.6797 3905.5016 5048.2377 13640.1664 5052.525 4919.6037 4225.5668 7623.1433 2210.0472 2365.38 2948.565 47731.8836 7757.2001 1862.0315 5871.1732 345015320 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 292295.8267 12622.6567 25305.7689 27108.2942 18281.3028 9698.1167 83976.6349 81940.2784 31769.8718 205174.7355 94082.1383 84939.4225 3074281.3618 88876.0745 386022.8902 127270.3546 79341.2028 79341.2028 27751.7149 77969.5332 47093.2349 51276.0689 119778.5804 73735.4644 41021.3531 95322.5894 96634.1585 123355.026 112995.3461 127092.804 99342.4145 52344.0034 105684.6947 93267.8301 62288.6774 172645.9883 300390303 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6045.5411 8454.6575 11849.5894 13978.8551 6698.237 7304.7161 6526.4298 6195.3936 20021.0782 4001.3026 136117.0249 6940.6618 13130.8692 10919.9751 5360.0794 5360.0794 8416.3776 7407.8208 7263.2678 4961.5752 7028.8421 11518.3576 3818.6576 5789.0127 17389.4687 3200.7396 10428.2382 14139.7593 13620.7352 4789.7908 4787.8534 7675.9652 3177.5953 387939567 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 5827.5364 10257.9879 25249.5937 3023.2463 37100.9242 2156.0357 4499.0702 7372.8121 4123.8618 62783.6363 4421.6449 6019.7191 3970.0276 3861.2394 3861.2394 2767.2785 15292.1674 10709.6132 4277.0066 5987.3278 42978.5648 12498.4621 4006.6775 6739.3288 2108.8209 7042.045 22020.8212 3637.9109 5769.0214 158450622 endoglucanase Carbon Cycling Carbon degradation Cellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 6775.9901 6306.3171 3458.7707 3948.3298 4433.4766 3462.9914 3976.7669 96283.7918 5879.8013 5516.0512 4710.474 2067.9338 2067.9338 10093.3239 7277.6241 5919.3021 5517.6858 7097.6677 5062.5623 5159.1755 2971.1806 7866.1552 2244.5092 12623.8188 4732.0085 7958.4976 3848.4672 3700.6128 4258.1103 3631.3876 13139.1889 4572432 metc Metal Homeostasis Mercury Detoxification Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 55949.646 21705.7626 17124.5645 25963.1112 12770.8127 64779.9205 143078.019 26263.9006 132207.7347 37520.6417 108017.6596 517552.7228 52023.832 40557.4575 43790.0979 91209.5325 91209.5325 30751.0784 78002.2762 46974.2331 133880.3631 31707.7893 39108.5302 29953.4322 27578.3285 69071.3909 41057.3826 78670.4218 76567.8131 52233.9509 19630.2751 63854.2982 38014.4143 31047.8002 123763.0382 408533501 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces davawensis JCM 4913 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 54595.2918 11078.3513 64302.4061 40769.8559 39497.8346 15994.1654 41393.4365 98815.2169 98787.9166 101921.1156 65546.886 58292.4961 1330836.8202 83976.9683 54310.1667 65498.1598 77258.5444 77258.5444 37352.802 84530.4111 40324.5572 59691.2741 82665.9267 98095.5216 62230.3236 30366.0692 51755.416 57340.199 134698.4001 40723.3553 56242.4789 67119.6067 52547.381 57225.1453 116468.9646 95371.3467 320103169 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 14961.4871 5862.0991 63435.7429 28679.3357 4954.3734 5320.4605 4038.3212 4086.4391 182663.0473 6994.4788 26583.8485 17601.4609 13471.0144 13471.0144 6865.849 4973.5141 3848.8136 5504.5203 26829.4866 2247.8256 11806.6247 11519.5558 13314.3489 6867.9506 17724.5232 7648.5651 316997264 amyA Carbon Cycling Carbon degradation Starch Kocuria varians superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria; 5900.1939 16664.2338 10125.6881 16858.0628 12290.2058 3530.8028 4847.3506 8385.9157 8539.1783 16372.0986 218176.3088 13207.3806 11251.8944 13942.1806 7111.7753 7111.7753 6110.0417 12592.264 16058.0859 5797.8006 8974.8008 9044.8764 3627.9369 10107.004 24727.3212 7839.8024 29486.6529 22863.6561 21262.2332 3185.0191 14150.3813 9907.6569 4428.3457 6780.9519 337761395 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 12838.9868 8446.5501 8361.1954 6211.8051 6657.6019 6656.9319 5851.1492 3293.0991 5386.4818 5927.5147 2343.9084 6631.5801 148836643 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6180.2795 3498.2594 2739.0349 3761.7269 4470.9422 1949.3709 1949.3709 6368.7959 4737.7417 2331.5138 3410.2117 7136.1767 13107.235 4132.7655 3161.1598 2872.151 2986.3049 42475466 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 186308.0408 64251.0093 101442.9076 50923.6415 97054.5811 23165.6527 88550.7137 211307.1975 68247.4004 62032.1005 136883.4332 99355.4319 1715741.4714 339089.2366 99315.3809 107826.0882 163949.5213 163949.5213 156824.8571 125190.6577 117295.7075 80966.6918 115312.4082 167667.4708 65959.6746 52836.2328 96137.8648 111480.9176 334291.6507 75739.813 108294.6287 81287.5645 66897.3347 87159.5415 68577.4437 137437.3832 222477146 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 33340.6755 16459.0175 28248.8098 44612.7499 12346.198 17271.8729 17234.5184 10523.415 27693.3993 29338.7627 28905.4249 556971.7822 22743.4829 152218.9746 25498.812 14917.2264 14917.2264 17154.862 23848.8711 20019.5301 34265.6338 95201.137 34565.4732 12653.6515 14951.6339 32241.9571 28763.81 44046.9281 33159.6033 41291.4076 17277.8287 12689.9585 20176.0756 92513.9925 58700.0779 345136572 ppx Phosphorus Polyphosphate degradation NA Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 20433.2308 5542.6346 17059.4232 7956.0325 1870.8356 77656.2921 25567.6969 4425.9067 7155.9854 4927.9942 60580.9079 7787.0401 4395.1667 23842.0461 3500.4395 3500.4395 4102.8593 10144.3114 7689.4327 8752.5409 27279.4477 4127.758 3448.8058 7777.0587 12917.2685 12293.0086 7648.0001 11126.3219 4229.8189 8279.5944 6263.3734 4256.531 10243.8766 349784764 fosx Virulence Antibiotic resistance Degradation Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 9306.0856 7427.6659 21327.6994 76917.6635 13509.9902 6841.9323 35302.0716 2355.3417 16604.5042 7572.8141 20813.3562 758825.1584 25571.2489 43377.4101 36436.6676 27750.0849 27750.0849 5603.7114 62984.686 16884.1936 4737.0955 15301.7985 5827.6042 7676.1712 15404.8093 30017.5934 9733.284 29592.133 24508.8718 23249.9559 11374.0096 20358.2201 13814.9895 5793.2533 11966.5964 54778265 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4698.2428 5919.1552 24139.8649 326318955 xylj Organic Remediation Aromatics BTEX and related aromatics Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 8776.5635 15829.7864 9954.4756 2880.8822 4180.8066 5496.6182 5481.3692 4246.9349 4246.9349 18087.2884 27651.006 4452.6051 17457.2299 5053.7918 4582.0761 16757.1181 3885.6373 11675.582 5615.9359 29303.8754 15769.6917 4161.7354 2795.5283 395985.3448 255939253 pme_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 12898.1126 8511.1681 16917.4545 8251.8103 14007.4973 74108.3852 6360.3406 10256.3003 22471.3582 5287.9001 304497.6193 18850.8107 17083.9965 15046.1342 6032.1391 6032.1391 9501.3854 18207.1438 13781.1472 16487.1035 14888.8234 20633.1334 7816.3254 6508.0768 17013.3926 7427.4046 25842.4406 13910.5621 17524.9223 7813.7051 8424.415 11668.8749 7490.1582 25622.2544 28542615 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10331.8444 9350.8173 7621.5984 6495.4127 5210.6571 3331.6976 8081.9822 6895.1437 3856.6516 171205.4918 7170.775 5398.2493 4345.6135 4088.5897 4088.5897 5429.858 18264.0143 13838.6501 8238.5494 12653.1889 13912.2206 3950.3792 5079.71 9530.6272 4851.8889 21373.1813 6843.6856 13658.5901 4979.8113 5598.9738 8309.3061 3943.1376 10932.0026 170750600 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 4795.9131 4041.4908 2349.4045 6729.7256 33768.0728 10356.9059 3520.1719 25563.0578 5512.7625 3650.8887 100456.3229 29384.9855 9567.5866 3699.3238 3517.6893 6363.1957 2426.3113 8300.7188 3802.2985 5622.7039 3090.7947 11970.3051 3840.611 5608.1492 386723166 B_lactamase_A Virulence Antibiotic resistance Degradation Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 144545.8765 28321.2992 64257.1356 31141.1158 41038.3639 12660.1579 70286.5717 92201.3861 42129.9457 61485.0177 150861.3583 117753.6428 4630395.3592 231713.3624 192575.5613 298837.0143 146139.6135 146139.6135 57711.2607 152788.5162 57879.0649 173878.3356 173088.6347 93200.9848 72566.3958 431539.9133 184453.31 313151.9326 369015.4507 161148.5234 150555.2459 67531.9854 134847.72 123573.9319 117956.4501 239714.9575 184196978 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 22659.829 11002.82 5433.0922 20597.9538 19724.3435 25860.6664 9855.9558 11813.0528 56022.7398 13726.1153 398158.0563 15228.2444 10243.8274 29582.4287 23164.2391 23164.2391 5386.7859 21396.6387 10526.0459 13891.251 14215.8595 42606.3697 11153.2019 14608.4298 14219.0789 15984.7955 98707.4321 9626.3496 20244.1341 20116.9287 15382.7142 31690.1689 20643.5268 14237.5703 289450664 amyA Carbon Cycling Carbon degradation Starch Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 10514.3016 2610.6776 5354.5237 2044.6806 5267.9407 4985.6181 2406.0882 53064.0607 6869.1689 22129.9421 4964.1832 4445.4006 4445.4006 5418.3829 6135.3947 4587.329 10447.372 4985.7654 7783.3556 4106.8654 7543.9354 2786.0732 10958.3201 5822.9274 1871.812 3388.1481 3501.3616 2327.5116 169242064 mer Metal Homeostasis Mercury Detoxification Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 15377.636 8190.0983 4424.578 3508.0086 10134.4277 16581.0151 7057.3384 11038.646 3535.1 147647.3852 24254.3308 8066.9796 6313.0716 10207.5889 10207.5889 4151.2309 11328.0641 8040.4887 5758.6394 10470.9169 7815.8326 3543.8472 4492.0392 16761.4487 5364.2171 18213.9778 7676.7959 12376.3223 5226.4713 7385.0338 6528.908 7731.9033 8853.9972 336321779 ara Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 29608.5619 13289.4919 65939.887 32203.4022 57504.8287 24813.6265 65576.7124 21377.8847 13217.0074 18312.4689 119475.9074 27647.2178 567997.0477 26657.1581 27392.7851 30296.3736 15792.5455 15792.5455 14482.0498 28710.9516 19326.7717 18483.7271 23447.4549 26239.2069 11361.3206 19619.5053 32949.74 54030.5616 42456.9791 33189.138 30509.8446 14523.1701 14330.208 14357.6766 12209.5252 21303.5138 123967460 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 5145.993 6822.3716 12470.9564 20282.4768 17126.7046 4597.0588 32829.3701 12217.7382 113588.1155 40723.8841 5763.4881 19701.9586 13841.0235 13841.0235 6123.6356 22976.9635 12719.7572 88973.6389 25977.1121 20454.2892 13905.7808 9972.2282 12408.4462 12371.6926 17647.9805 22528.9935 24753.6888 8322.9853 18097.0507 18684.719 12412.4746 6970.9473 291370726 napa Nitrogen Dissimilatory N reduction NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 24520.212 12076.5914 11804.3312 256352.5544 22142.6483 9356.1832 24367.4606 8931.2816 47246.34 18961.8785 44929.3446 313783.0502 26891.508 22808.8929 43742.8774 35087.2039 35087.2039 6430.3723 69384.0694 19583.2192 109922.5942 12058.1917 13475.2342 26889.5373 26435.1087 37671.2494 15218.238 50841.8484 29372.5334 44868.6489 10804.1543 26325.4112 20990.1243 20144.1693 11792.0007 329305316 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 7345.091 4299.3558 36641.8497 20650.7897 5516.7838 6671.7876 3840.3929 92830.7007 9736.0829 3706.1184 26945.6556 14458.3387 11004.524 11004.524 20395.883 4496.9119 10228.0155 6041.0969 16030.2514 21646.635 8691.3543 4043.4201 19589.7933 29102.2212 16838.4761 2662.6052 42344.7552 8305.0696 12034.7208 10332.9384 260426599 mmox Carbon Cycling Methane Methane oxidation Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 143634.8447 17217.3456 24947.0554 28304.2126 13017.3236 15169.346 24485.3014 81006.0638 55510.9745 29816.6352 189241.7393 50727.7663 658815.3063 45959.2949 87500.6599 116003.1276 56081.0707 56081.0707 27954.3932 149928.9011 186534.4962 33249.1316 101925.5877 53375.3603 17817.0596 67261.7729 60407.1911 88721.7259 35364.9224 54232.7614 50563.9514 22929.9059 49549.1686 44045.5472 18426.4101 51070.9028 345870832 nifh Nitrogen Nitrogen fixation NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 5096.0917 4269.3535 6934.5967 3245.7252 4746.5341 118818.3068 4150.1632 10227.3935 55168.7553 55168.7553 3577.5167 478687.2563 7472.1399 6987.4085 4248.5238 3257.2653 5331.7671 4210.164 11668.7451 9549.1753 5805.7532 2617.4187 3601.6652 3639.646 109969.7547 330427321 ppx Phosphorus Polyphosphate degradation NA Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 8688.7082 20074.8297 5922.6291 4356.2903 25312.3206 11444.5168 6544.2746 2506.1136 6799.5141 5920.3043 8604.2366 81584.1518 6519.6084 75790.8708 5196.8758 3571.5038 3571.5038 3123.6283 14606.2166 7634.5305 5784.1086 6951.82 6531.6201 4178.8652 4434.5832 12502.0152 3310.937 13335.6484 9063.7697 23295.9719 5185.4164 10393.4018 9499.6899 255226.9579 13803.9672 116226308 RgaE Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 79204.7921 39999.8915 32994.1118 20157.5363 45430.1709 28252.0065 15246.058 22430.8946 17506.0273 32063.8594 24386.7955 23252.4249 330232.0142 31974.864 87334.7295 44011.8782 29938.4701 29938.4701 56890.4068 31781.5609 24148.611 891647.4396 24956.7336 82662.994 16947.8732 38695.1623 44469.6097 40350.509 71634.5602 23955.7843 44074.093 25242.8459 25682.4278 25986.0713 9018.2579 33770.5413 255935331 dehh109 Organic Remediation Chlorinated solvents NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 14575.4694 8801.9717 10276.5822 9679.67 7636.4271 14342.6401 10158.7703 4545.4473 33384.8732 12661.7352 6602.9816 234071.5887 17592.4204 120426.6138 9875.6492 4847.299 4847.299 8789.4673 17721.0125 14515.4238 21859.2488 20301.9526 13434.1342 6854.3441 5772.7627 15570.6613 5725.2221 23570.5205 11892.2848 17889.4454 9663.2001 7784.7965 7961.3219 13213.7579 16806.8933 384103436 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 60515.0044 11440.7448 35900.7484 18289.6412 390621.9128 6221.905 28748.9238 31296.963 7428.557 37425.4824 39709.072 113453.1049 533570.6489 19545.9147 54939.9488 48945.639 37919.0853 37919.0853 25183.1739 48746.7884 102284.3788 90585.0992 89894.0162 21887.9159 10641.9033 22315.9314 33659.4899 36869.6309 100388.2559 24840.8977 44361.7215 24094.0393 23459.8871 43709.6055 38956.0458 133964.3615 291538990 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseburia intestinalis XB6B4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 7755.1532 7861.9235 11102.3455 44999.1909 3230.9199 1978.1886 5454.5989 116696225 cmci Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 8987.6917 8105.5735 5781.9841 4062.0459 3233.4081 39273.5046 8669.5656 190664.5285 9651.1994 20570.9518 25192.0896 3600.7931 3600.7931 2873.66 9561.1685 10192.928 10390.5458 3072.5472 5643.1707 5339.3405 3964.2087 288547.0868 4790.8438 2089.2972 3514.8054 7113.9499 3035.5443 7452.1165 397847 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 10269.44345 11313.3609 4698.8781 10190.17745 7959.77735 5164.12515 7931.011 3639.88575 7128.69065 10772.8375 10152.98445 143303.0334 10190.171 25206.26525 17624.7189 9534.81265 9534.81265 11535.5996 14758.85895 13606.4159 15663.2732 14577.50335 9138.0232 4576.44305 10085.10025 17656.2959 10080.9755 19023.1895 14792.8176 19669.07555 9971.80005 10869.3615 8658.6287 17500.1789 16057.4882 359300018 ppx Phosphorus Polyphosphate degradation NA parainfluenzae] CCUG 13788 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus sputorum; 4939.7437 8785.1891 4734.9981 5487.7549 3319.3481 6385.7963 6795.2222 40416.179 132602.4586 7032.2171 6488.7479 4687.4748 2389.6337 2389.6337 3723.0176 11029.1776 7285.5734 8374.1342 9737.6509 9550.8086 3657.4626 3655.4377 8722.3064 3741.6232 18165.3795 8346.704 9421.8958 5581.3423 4959.5054 61325.527 4253.1259 9319.5061 84683424 phn Organic Remediation Herbicides related compound NA Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 31194.4344 14615.9666 31641.1508 24517.2945 5455.8183 21778.9614 33101.5794 8335.8728 24823.2879 15434.2441 26841.3565 468909.8608 21966.9737 19400.835 13700.9371 17262.1571 17262.1571 17219.9929 35383.4648 23578.06 16190.1113 26406.2087 32998.6092 14527.7303 18554.3257 35650.0202 17511.9999 75820.758 12971.9207 24529.1163 12705.3999 17361.9606 16475.4642 10040.9999 26116.9768 383772663 catechol_b Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4848.9211 7827.5744 9120.9177 2688.2913 2933.8918 6304.2504 2577.8478 4220.2897 5008.9416 29529.0486 2774.2744 2774.2744 3003.8845 15815.7225 5752.5287 4954.8489 8636.9028 5328.0533 4298.5247 2933.5468 5861.2806 5246.3098 27370.8957 10234.6793 5147.7036 2274.4412 4998.3839 5377.8992 4802.789 5233.4786 45386183 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 70482.3939 48291.7192 53138.6145 59538.8904 47372.8329 11608.0342 437066.2491 57053.5176 47854.2174 46820.0864 56202.7105 46599.3407 877177.1952 355504.2564 75666.7686 62705.4043 59102.4624 59102.4624 31017.0079 78445.4442 42445.4105 56777.9258 55480.823 37201.3908 33778.1137 66449.11 67258.1001 64319.7837 149298.854 63604.0698 65642.326 32128.3932 49166.7908 68235.649 61434.1704 62185.5292 111613425 ophc Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 73557.4466 5777.4211 3645.6462 25072.6671 2129.3946 9875.4097 23326.9555 3717.3515 15876.6566 2134.8128 4358.8745 357939092 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4934.9558 91901.5511 111653.4707 3108.0473 3630.7648 5061.1208 24409.5031 14029.0869 5490.5416 100622.4424 11717.3225 7247.8326 9109.9028 11929.4424 11929.4424 4448.2697 13760.0963 6552.6288 31447.6972 9048.0842 6667.5154 2800.4965 4342.7237 11471.5876 4290.422 48538.634 25039.2041 8613.5634 4065.383 6459.7545 7273.34 16952.2883 8337.1196 328882621 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 17662.1167 384618.7752 18489.4734 10054.7964 6315.8793 4867.6156 12028.6813 179584.7238 7558.6841 7558.6841 2944.8075 4383.2853 27200.8346 15178.0269 5219.2933 13576.616 9148.9994 3867.2353 11637.6324 10237.8307 8519.3657 4416.722 6628.7019 4808.6214 3340.3745 14902.708 218564118 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6704.5239 6727.0256 2930.5121 9943.2701 7140.3906 6612.9049 3074.0591 89375.6546 6861.3576 6507.2291 2548.5116 2548.5116 3160.2387 8128.5817 6847.806 5252.4701 10575.7097 6103.4953 3200.5999 3514.4153 8037.5108 3239.1795 10409.3057 5262.8654 10221.0069 2847.3485 4090.0459 6273.0179 4538.6515 7577.2574 353188446 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4087.827 5598.4572 13490.5163 4613.0848 8027.6339 13379.423 4074.5592 4074.194 10496.2848 10496.2848 3259.0269 12334.7472 11765.6461 27504.18 4140.464 3019.6793 6372.1353 4219.2884 43423.9663 3897.9867 5832.0374 2937.6518 5528.5379 11103.7135 5286.9574 405379258 cmci Organic Remediation Aromatics Other aromatics Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 5868.6406 5692.5226 19377.7879 11524.0059 8825.4831 15190.9244 4091.6371 4767.8864 10503.4101 7802.6414 141006.9805 4822.9327 9071.342 7590.1762 6349.6571 6349.6571 3131.6231 10070.5714 11170.9239 13007.9367 4855.7837 12561.719 2984.2022 5722.8335 25003.6031 25063.5014 17328.7962 5611.1697 19108.8428 5376.7431 10437.5492 7605.4996 9899.0651 7173.2891 192361813 FBPase Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 31390.6728 11459.3014 115366286 terc Metal Homeostasis Tellurium Detoxification Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 24122.7174 9103.1717 19557.8759 14605.9669 6467.1219 17354.9355 11261.049 9475.3378 37018.8043 14190.6423 9607.0186 508200.527 19500.7253 17402.9104 15031.6939 12759.1238 12759.1238 29551.4516 34005.6216 17653.8716 16858.9562 24055.8982 38678.0106 14826.2083 10504.6377 23848.2733 10153.9966 35813.1194 11564.7713 21197.3271 10148.6705 13793.7081 26924.8108 21528.4226 24434.2918 302697575 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 77501.8078 15173.7036 280176.9632 25734.3986 23442.7926 14455.4565 35208.2908 15715.9911 18730.7499 22881.7186 24951.1057 248676.0199 194135.6635 44008.3842 129574.213 58080.6652 58080.6652 24510.6365 39557.7698 14787.5121 37513.7672 29289.4728 26378.2977 14290.8198 26363.4995 24761.2618 52632.4423 68149.3313 27055.3684 31539.1389 8690.3431 15486.0188 43601.2221 11345.1658 38595.6781 396938747 atza Organic Remediation Herbicides related compound NA Methanoculleus bourgensis MS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus bourgensis; 16910.9976 14366.8113 12489.1598 18902.6852 14310.9435 5812.5172 15036.6683 10584.3494 8537.4525 13560.8764 16710.8814 7356.2387 492773.3271 18465.2107 184296.3346 10222.0206 9188.434 9188.434 16172.6545 24596.6537 15596.494 20116.1796 24327.69 33168.3448 9862.867 8822.9454 26542.743 8829.0208 31428.9835 19474.9442 26697.4437 9214.5169 13742.1267 13592.8131 8698.4651 27935.583 169864346 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 19269.6102 5018.3058 34207.6526 52546.5675 29630.511 38581.3333 20265.7544 2016.3423 28546.4187 39339.5164 70758.0731 3763397.6174 47274.5526 63723.1021 21683.9476 22232.2763 22232.2763 11262.1467 61563.8855 21897.4051 15735.9061 14279.5267 20667.9429 24716.9891 49210.5134 146040.6648 33376.5761 71967.1185 64817.6887 73894.238 29373.3561 48639.0892 71017.342 11559.0704 12433.5659 359353212 dsra Sulfur sulfite reduction NA Sphaerochaeta pleomorpha str. Grapes superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 7926.5565 11057.7793 5839.5338 7549.5958 5386.6166 3326.4959 19040.7608 6036.8603 66891.8651 4588.0644 4610.1035 11603.9 5329.7455 5329.7455 7120.6424 6875.2951 9837.8396 2909.2315 12236.8681 3804.2587 14428.3825 7785.1069 11095.1092 2958.5657 4119.87 3820.8859 3809.4309 214039093 ppk Phosphorus Polyphosphate synthesis NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4677.5996 201661.8584 14656.1192 16564.3241 9767.7178 5996.6485 5509.064 3360.2309 285092.5226 4669.3369 5330.1725 2285.058 2285.058 3220.2587 9815.1992 13204.5545 8899.0174 7507.8713 7824.3968 394105.6218 7431.1543 9612.569 3632.4272 16085.8098 9720.0983 10737.0159 3951.3008 6814.1628 9459.9491 4855.1835 8600.6235 206677631 rd Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 97174.8109 13992.5744 32153.4333 19732.5924 18417.8623 118501.1015 96495.3279 26461.1293 26654.6895 95495.1909 76481.1578 902392.46 49497.797 65539.6778 249050.7408 84506.1197 84506.1197 33734.7896 93345.8817 42265.0962 59100.3089 72233.8075 252969.2364 64044.4984 52869.7674 73438.1134 75749.6881 283734.216 84210.3638 65945.2513 31083.1926 64744.6404 49537.8213 50075.9001 65764.1682 77378443 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 75257.1502 14495.3258 138861.3584 8894.7079 18247.3934 15718.5128 15501.646 71029.8042 20481.2373 90685.2027 21316.3737 379473.3101 60625.0216 160604.0705 29022.2671 21020.4876 21020.4876 9790.3352 27712.6572 17941.3433 14919.8863 71185.7262 19642.9408 10829.841 18465.9264 28574.4357 11108.5713 66603.1736 16105.2941 64123.7725 8014.014 12948.4132 17677.1332 11253.1705 18440.6475 207725024 proO Organic Remediation Aromatics Other aromatics Ralstonia solanacearum MolK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 21098.2706 46394.6204 5795.528 41855.802 15324.4845 3698.8566 23033.6991 33547.3171 9143.011 6662.6858 12553.3484 534117.7907 8409.6815 14610.6509 23126.4863 27071.3645 27071.3645 12959.0347 29510.0305 12722.6986 5444.6283 30995.2115 12063.2685 5180.3275 9928.632 33120.4958 15251.0223 100127.876 24092.4972 49471.4067 20112.8772 8444.872 12028.258 5857.5914 148255472 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8826.4515 42140.5599 5504.3549 9464.2106 6357.3257 2349.7211 4183.5946 3124.4224 6075.3383 29163.8259 9543.4945 98275.8676 9448.3197 21275.0135 13912.2347 6556.0035 6556.0035 10227.7471 13612.1562 27095.02 6596.2483 81761.2712 7179.9106 6623.4336 11177.6375 12341.8345 15782.4479 18047.7523 14254.3189 13261.1063 4924.2952 5174.8688 9863.4567 5240.7761 5267.7354 242129864 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 11319.5144 13655.8493 11502.0948 7408.8325 9586.8545 5728.6787 11632.9273 6270.0559 7176.286 8630.4733 4172.5373 107628.6532 11528.2476 15488.9912 8102.8335 3303.3303 3303.3303 19683.6697 16327.8155 11303.3996 43163.5044 86705.8143 11837.5719 3807.8883 4582.9325 11138.1479 4828.6337 16887.1471 17038.6317 12249.5618 38039.6803 5982.1234 8561.7654 7881.1619 14491.2082 225163005 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 22231.8942 17145.6325 8271.8252 75467.4587 19526.1681 5281.0511 11918.6869 12041.5072 161109.036 7863.1018 7592.7989 17128.6642 23696.6779 23696.6779 39105.0114 116120.2097 4947.7392 10056.1474 17711.439 6873.2987 7808.8712 22170.5553 15494.527 118910.1105 10236.4843 16870.2299 41625.6575 28561.7672 9043.8333 12886.3003 22914.0468 499712 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 7906.3211 6481.7166 54513.898 5292.1732 4438.2857 13430.4783 2150.3859 10948.2735 9664.5289 6683.2276 304352.5748 10834.4636 14880.9122 14924.1001 12788.7696 12788.7696 130715.8363 16231.6185 15688.7294 25579.9295 9528.2336 8915.9147 4102.2834 26121.4043 30624.1212 10119.5082 21674.9909 9348.4582 16843.5217 6126.3665 19331.1484 10897.3514 6166.2127 357079644 tfdb Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3601.0158 6662.4651 6618.1515 6826.4902 3993.4636 4074.6336 120099.014 4304.582 5681.3681 4615.297 4615.297 5350.2665 5902.3096 5171.7072 6937.3987 3057.036 11185.7735 5380.9389 3687.3192 3411.4239 10935.6655 22164006 nifh Nitrogen Nitrogen fixation NA Rhodovulum sp. CP-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 1171011.5333 31698.2455 5047.4034 388550256 amyA Carbon Cycling Carbon degradation Starch Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 4133.1939 9822.3253 58210.0578 13414.5922 2513.1076 6377.0543 5459.521 6773.7332 4865.461 120325.7617 9230.8123 14946.3177 14045.6999 7942.336 7942.336 27494.9409 9305.66 6662.7208 35983.6692 11713.4899 3970.911 7686.4235 5956.3113 21683.1706 4652.2546 46643.1259 15031.5871 17053.5699 6243.4475 14293.2514 7879.9939 3670.8676 4461.2781 34017032 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 64885.3211 54191.6221 5886.1884 18903.4562 5524.032 6356.5901 42563.477 39226.1746 119941.1681 58804.6329 25748.0089 1000518.2291 21645.4137 54065.6401 28162.1841 30387.9073 30387.9073 23597.26 36480.2506 23897.5149 52706.0311 88407.5274 9227.3056 36698.8352 33672.0777 32062.2972 42707.0833 99557.8881 183552.1775 28807.7947 21397.7769 48726.6234 31859.2839 17546.4692 27323.5938 77973096 urec Nitrogen Ammonification NA Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 19075.4686 4393.1438 4364.234 84396.8199 5016.6179 4103.0372 84222.3612 5918.9626 7462.4016 24478.226 68623.3678 9013.0573 21524.8813 9647.1293 7644.4654 6531.8352 5413.5562 4494.7625 3634.0459 35652.7229 12706.5875 396928400 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 27284.1836 32371.1657 55913.542 23257.5178 43801.6276 81765.9312 11975.2536 26184.4482 12838.7749 19712.7899 29549.9408 29464.6456 704138.9887 26483.0593 30027.4136 19966.4693 38041.3899 38041.3899 20325.5304 32819.5189 24389.908 18605.3218 62205.7291 35703.6226 22203.4426 23392.786 35819.595 13407.3501 71519.0248 29116.2154 69616.9333 12060.8028 16100.6303 23622.1585 11086.1573 19816.7445 881939 norb Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 25678.7313 10504.5803 24114.7332 42669.8779 6765.4008 15942.1419 4835.3392 8905.4358 13175.1503 27487.6336 514216.4501 9462.138 10356.5375 75525.9555 16854.2582 16854.2582 26149.8098 68745.4659 51130.1055 14735.0385 112523.7296 263758.8444 33074.2904 28375.4211 28612.7669 19424.1139 33676.2668 72102.5204 32538.8725 17413.9187 47737.7152 22964.22 24048.4559 22682.1361 33594314 cysI Sulfur Other NA Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 15775.5564 5650.4234 5656.2292 4332.1404 6527.8526 9233.4568 5821.4848 104772.681 8368.7544 8006.4681 6086.2302 5928.206 5928.206 9059.4835 13870.1865 9615.0226 8704.4947 17633.5166 15726.8211 5921.8887 6308.4307 27837.4115 5953.4458 24629.4569 14737.147 13897.3226 5410.4357 5355.4951 8392.7243 4676.3055 10035.0261 326413813 tktA Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 109967.8975 67987.5907 10447.7807 48759.0431 22079.8364 11020.4599 20401.6193 62845.6775 23673.7476 33200.9667 54550.3165 732354.8427 107467.8558 460532.0225 52492.4854 36121.7275 36121.7275 31216.869 59694.0406 221079.9529 43735.9846 100491.338 24974.3719 24980.9224 51244.758 36320.4622 29629.1127 80023.1977 54511.019 49275.608 29143.082 37198.4515 57398.9279 34868.4869 41510.0206 91774326 mcra Carbon Cycling Methane Methanogenesis Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 4767.566 5381.4815 3066.7979 5791.15 9560.5091 3981.0094 111657.6955 5198.9191 6655.2166 5488.973 2409.1897 2409.1897 5923.9982 9250.8743 7483.3166 11933.5174 8524.731 9782.7269 3402.8083 3529.2842 9946.3542 2649.2954 12143.6543 7522.7537 12024.2647 3923.5324 4295.333 6934.5253 3380.3619 7232.5089 119391437 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 327964.6124 136741.5027 406292.9569 227008.8576 125038.7803 141888.7311 224838.3555 496956.6783 501783.0952 246950.5894 249731.7842 216858.9055 3354490.5395 221789.0748 397416.0875 556832.9821 295762.28 295762.28 170282.1799 293760.8371 259436.1543 829901.4586 398345.9168 438367.6579 273558.4348 153805.6142 218539.3191 172997.5483 514664.403 325094.4432 231818.1618 197421.38 177207.7854 218091.0721 138810.195 647453.573 383320528 amyA Carbon Cycling Carbon degradation Starch Methanocella conradii HZ254 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella conradii; 7708.4777 17321.8013 4936.1477 3887.2667 4894.5595 2929.8307 38248.9546 10249.0088 14520.3833 172937.6549 8822.4284 15985.8666 5795.6849 12339.6722 12339.6722 5222.4625 13518.1748 8358.2902 16727.0612 10449.1571 12388.9997 4793.0835 6818.3246 8610.2982 6243.4538 15787.6143 14264.9183 9242.9251 28524.2238 6771.5704 51949.1315 6952.5972 7671.6408 407299551 arylest Organic Remediation Aromatics Other aromatics Nitratireductor pacificus pht-3B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 7813.1363 10174.9636 3811.4015 2778.7636 3844.1359 3419.2894 5528.2745 7377.3095 6236.4186 3624.4726 3624.4726 7145.7235 6462.363 7172.4484 7877.8068 12204.8585 2472.8119 6377.1147 4022.6167 20543.9283 16231.3874 28553.9533 325293751 urec Nitrogen Ammonification NA Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 4217.7679 8686.9482 39659.4596 28250.268 19825.3516 24395.385 3825.2942 4951.6647 66640.3296 6759.4714 6594.2954 5574.6553 2398.5034 2398.5034 4562.0406 10346.367 16237.6827 5026.4712 27003.2055 2451.2493 27072.7582 10790.014 22004.4656 6462.5706 7592.8815 11829.5862 2372.7369 26278800 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26503.3786 3243971.4804 13244.9381 14400.7314 16334.2091 10820.4906 17095.3314 18462.4679 12304.0136 13989.1961 39186.7561 63607.4386 325689.0942 18949.4686 26544.4073 30277.2967 18456.2731 18456.2731 12708.7022 42904.1385 24554.4756 26385.6685 132828.1599 40192.5232 70076.3888 15935.5204 25759.1516 39251.2597 51248.0666 30047.4607 38825.3625 21166.4742 24133.2887 104004.4296 13457.7122 29952.3025 260891365 amyA Carbon Cycling Carbon degradation Starch Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 14040.0832 11922.2782 6859.0499 22671.2047 4932.5378 4746.1302 8941.3253 12762.8417 6021.0546 172107.8401 15725.5833 7015.8052 5931.0436 4649.815 4649.815 6812.6464 15389.0534 11697.8135 8403.4977 12835.5334 9929.654 4726.0324 5377.0299 12657.1797 4524.0078 21552.8052 7126.9955 13753.8168 5831.8559 7075.6662 8555.8239 6255.0794 12617.422 74484304 cyma Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17398.5114 12444.9557 7701.1123 13877.7928 8276.8429 124559.1807 17955.0057 32548.6987 10813.27 16449.522 6958.205 228117.054 16543.9023 13538.5643 12137.446 13602.6009 13602.6009 9133.6553 25524.1 12444.1055 12818.4365 15266.0134 17953.9984 7488.422 9428.6614 15707.6989 7604.3156 26236.5993 9916.9876 14848.3028 13178.2955 8555.5922 11077.7186 7195.0487 17935.5901 84515365 FBPase Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 200933.7554 32610.3363 108900.7806 102901.0583 30206.0607 30123.6397 46321.2593 22603.9812 44972.1179 47866.2905 96853.8528 767408.9976 71829.325 57182.4639 79984.2962 65489.6369 65489.6369 37280.207 56823.9367 43850.1527 25070.5442 53880.4119 47532.4396 51709.7407 51018.7284 92213.812 63316.3668 125954.4557 51916.7771 87082.9501 35583.53 32888.484 63699.5786 27248.9751 35991.3693 237846161 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5288.6475 2918.0047 4367.7263 3289.455 28522.5908 9981.1349 86928.9466 21363.0358 2116.8552 2116.8552 4551.5234 16795.6103 13931.4453 5301.2779 5360.5536 2752.5033 4622.6199 9171.7879 2758.0991 17597.9307 40997.7966 9572.6385 4512.221 4814.0197 7464.6722 3566.3258 8562.7605 158450602 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 6605.3117 1947.6553 2849.6927 3806.5611 3081.8223 4965.6445 2658.7455 9328.7938 4726.2664 8613.3655 2479.7718 194295010 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas lacticifex superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 19632.1699 17283.8637 57116.6855 14019.1939 293333.4546 8937.261 11159.8322 16033.4934 4894.8475 7481.5532 13305.6188 6623.4922 325425.2532 18808.6308 40940.5967 11539.14 7920.0714 7920.0714 7957.4807 20507.0138 13178.7286 98360.6421 10185.851 14549.8214 5362.1421 9101.5128 28264.744 42952.0502 23882.4426 30235.5316 18390.7285 11272.3809 10275.4668 16665.9394 6020.7723 13513.4078 392721067 poba Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 13463.9472 5092.2923 8861.2707 10613.0054 5286.7762 7693.0791 2818.0207 7116.8011 8212.9557 12342.6664 161682.7543 9194.8107 8560.0459 4808.8729 8280.6739 8280.6739 4546.7651 13199.7712 5432.4703 7115.5596 10640.262 11289.1025 5499.6322 3848.9861 11760.4218 6683.6729 79514.6245 7572.8304 10485.3851 5492.0296 9753.3861 6626.5839 12800.714 17694.957 384040851 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 30471.5342 8563.4747 23284.992 12640.9159 8852.6759 6300.3533 10845.7557 32772.9105 25393.1443 96481.4944 19969.925 10129.5327 29136.8125 26480.1589 26480.1589 9370.4828 17926.9691 12643.6065 15084.6086 20103.0954 15838.587 59702.9794 38573.2519 18530.5561 25235.5192 75721.9845 28554.4622 72370.2389 9585.8944 26552.9652 17306.6385 7010.9363 118730.1394 28872010 urec Nitrogen Ammonification NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 154873.3152 16523.447 40383.4401 74352.523 241102.5836 32015.5929 273583.9871 176860.7138 140545.0754 81987.8667 67465.6515 118759.03 1564038.1776 227460.4958 125347.7669 437205.7165 219712.7449 219712.7449 66391.599 111979.5336 61590.556 476125.2245 178643.1422 76318.0199 102958.7608 60997.9039 75342.4677 97029.1645 223284.0107 259688.7552 138254.3737 94371.7447 120296.6461 92589.8599 257543.1023 234222.3475 77964440 chnb Organic Remediation Other Hydrocarbons NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 27985.3153 6062.9395 16030.8656 11417.9989 6433.0715 7528.8742 20154.589 2801.9868 7826.1801 33451.2175 6954.8451 113776.3908 12266.93 12542.7986 5544.3527 5950.2217 5950.2217 6117.7959 18846.1941 10599.0077 14550.954 11026.1652 21298.9082 9237.5972 6262.3536 46344.2782 7831.9936 25521.4148 15145.7836 13497.604 5486.9826 9351.5899 9126.3421 6472.3305 85246.792 223042474 nirb Nitrogen Assimilatory N reduction NA Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 4397.1992 2224.4283 3066.8673 4784.802 70323.5452 7001.5855 5138.9681 3153.5999 9220.7555 6200.4554 5297.1715 6738.3568 6224.4743 3079.7027 2525.7535 6700.6262 2439.1704 11660.1734 6887.6682 2407.9839 3740.5476 3770.3907 3110.9359 9413.4111 332340687 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi ATCC 484 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas fimi; 14812.7171 57526.2336 4691.7841 10721.1672 3794.9715 3705.3199 3613.1085 5046.0573 4873.6271 107366.1135 5041.9464 8922.926 17296.9619 6462.9144 6462.9144 4603.7962 12316.4257 9101.8671 6890.3641 9212.4835 8226.1569 5592.8943 4952.6138 8789.48 3437.8004 18509.9338 9200.2992 10220.5485 2751.1981 7372.2069 28928.6966 5497.8214 300109003 badh Organic Remediation Aromatics Other aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7914.1596 8813.5745 4747.615 4766.1155 7510.1641 3555.3345 97299.7557 5816.0242 10861.7837 5954.0321 6880.8693 6880.8693 17920.4367 17975.7371 4774.0949 15866.0723 6400.3624 4428.6758 3157.8607 3111.9886 5878.9449 4062.3226 14249.4327 4651.9346 7683.0291 3213.5117 18415.747 14721.9862 6079.9033 7138.7078 336117387 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 11636.632 7074.8185 12562.4698 10892.8518 5982.5814 3079.9524 7674.8692 8246.4886 5813.266 239307.4885 8395.2858 12003.9819 3468.1788 3468.1788 8205.9 16480.8859 11729.8257 13279.4698 12819.1203 10376.4635 6294.1795 7178.8262 11916.7658 5932.5678 25065.142 14788.6668 18429.5117 9852.0955 109452.8174 9860.1884 7751.0862 17066.2261 170654948 terc Metal Homeostasis Tellurium Detoxification Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 9491.7871 6461.1196 5566.1156 13062.1294 4966.233 12162.0166 24193.9807 6884.5843 5521.8686 8222.6362 178684.9132 12514.7906 10905.5908 7489.8375 16406.8742 16406.8742 17296.1569 20757.6743 9312.3484 8038.1671 5519.3351 6510.5018 6760.8527 10620.6315 10031.8133 19877.2791 20509.3052 10987.6922 14453.4752 5626.8429 8881.6763 15480.8782 7291.7907 10260.6927 296808569 tfth Organic Remediation Aromatics Chlorinated aromatics Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 5473.9344 4097.7563 4932.4929 5637.0703 3463.5293 7056.4241 5567.9163 2443.2992 93877.7585 4515.1642 5499.6141 8250.3575 8250.3575 4073.9156 11429.4408 7185.3245 4477.1003 4228.0443 4702.8431 4085.5383 3085.0332 7955.7588 3749.4391 11623.4167 8885.4875 3690.7436 5529.7554 4046.6355 5059.5613 9010.646 89068306 ppx Phosphorus Polyphosphate degradation NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 10928.296 27253.097 19642.7184 9868.3676 6632.6526 26396.9281 10487.1023 9584.2612 19394.0933 163537.7842 294500.1191 10284.8314 13003.9193 8951.4947 9932.8664 9932.8664 7831.3231 14817.0849 11925.1174 82966.8461 17472.7588 12411.7832 7643.0305 8370.8962 15060.7731 15959.6759 25892.6975 14436.3819 56299.1892 4435.2332 8099.6881 10723.8082 8387.4677 9388.6254 239933495 urec Nitrogen Ammonification NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 85784.1204 83744.5885 65045.9343 87540.9417 56627.4962 16685.2633 64369.7461 90570.8486 50162.5601 63957.5391 87707.139 134988.4644 1192154.1268 83217.891 188683.5834 85649.7943 80978.6161 80978.6161 55960.5447 112700.3384 65890.6118 113094.4761 95490.7453 126858.5173 57902.8779 44975.2232 119330.651 66495.7197 169190.3835 142363.6923 99244.6841 40326.0807 50122.7753 84832.6414 92967.8454 249692.8329 87285064 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 14215.1054 4406.9669 10974.8563 23054.6568 7350.2535 53360.4685 8695.4241 6976.5993 10521.4344 3509.7657 108665.7187 9634.1347 12435.7643 13573.3324 8907.1395 8907.1395 7221.487 12762.4583 14410.1114 40309.3302 6723.1782 14445.0406 7083.51 8591.1568 16297.1226 6024.2869 29844.0892 15035.8543 20103.7527 12101.8085 7808.6402 12459.2846 4767.4641 7497.7415 367028915 phenol_oxidase Carbon Cycling Carbon degradation Lignin Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 12457.5633 35633.9764 8833.3738 15443.2547 6313.114 7427.0194 16745.5378 9353.4487 127111.9396 9388.4738 13280.2637 15719.9116 14751.6997 14751.6997 4114.3213 9994.0141 23411.8134 18448.9036 9474.2106 11907.0893 3983.0792 6997.6291 8639.6206 8735.2121 18580.9569 13166.6782 15929.0478 4614.5291 9830.8323 5969.4208 7566.3931 11733.6791 307595865 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 64833.9633 7097.9649 7086.1012 8722.3984 2561.9466 4303.7311 6966.7279 5203.3995 3856.3998 3148.6501 94281.3412 6041.3993 11922.6413 6422.85 6509.5472 6509.5472 3402.5774 13711.9428 4608.6791 9482.4206 8108.3336 5113.0576 4710.6117 4983.3224 9925.6348 3416.2997 14792.5183 7132.0733 5297.4776 6824.7093 14305.0267 9869.827 5105.192 114339985 PRI Carbon Cycling Carbon fixation Calvin cycle Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 11608.636 14044.2592 6800.5804 17129.7271 4275.9948 8448.5347 11455.6264 5402.3031 170102.2039 10182.4279 14599.6998 19170.7291 13696.741 13696.741 7285.9093 13772.9401 9268.7291 16095.9463 12586.6788 19054.7806 5324.4466 5300.4372 13246.282 9261.3637 25914.8743 8169.6172 14297.7479 4509.544 5494.8349 6732.813 11938.1755 14086.835 325110605 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 8925.7808 23139.2057 22665.0486 5877.6584 7313.4059 7151.8934 2754.7381 9327.8559 11223.0168 4251.4633 176565.7958 10931.797 11917.0999 16400.7039 6554.2783 6554.2783 7413.6589 21516.4387 10815.9155 6605.281 11939.6615 14160.1622 10038.8291 5112.509 39400.9983 7665.3324 24540.2718 12858.2041 15863.7506 6873.9539 7976.3286 6265.4634 7487.3124 20058.0561 218251368 dsra Sulfur sulfite reduction NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 19626.3126 34125.1063 11356.6527 4504.1204 10222.2112 39734.1654 27354.7584 23334.5236 30234.5935 296542.4067 7491.8443 14612.3768 25891.3564 20902.5752 20902.5752 12249.8264 48686.1742 5329.5632 6511.0242 28816.0527 10685.1531 5683.5344 10061.1291 15134.2096 12083.5771 27271.9591 16858.7578 18959.7951 12306.615 25193.3466 26530.9009 50841.2963 19815.3272 169241478 urec Nitrogen Ammonification NA Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 199894.7359 31534.2038 36675.9708 15892.7461 11603.6856 44337.6385 56661.9612 66626.956 44562.2331 64066.4178 49814.0597 855283.2911 145368.4787 134910.0298 113887.9909 100161.7654 100161.7654 46470.3189 124316.2465 41084.1146 59323.4083 116653.5243 45664.341 98192.2475 87239.9459 734985.1444 42952.1775 131577.069 71304.5191 50513.3359 31771.1836 65704.2967 72357.1967 33750.8469 258977.7591 365898783 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 21332.8997 9303.6048 12090.0738 10371.0357 6205.9093 12520.4735 11457.331 6909.3796 12291.639 15168.2699 21185.0911 293049.9546 15389.0858 17292.7801 14878.7892 10214.1788 10214.1788 10798.7543 26689.7941 16795.5388 23675.6735 18779.1069 22439.0953 8392.1242 11052.8768 19101.3228 8671.7605 25164.5877 8112.9656 20174.8266 11346.477 11623.6741 10161.5461 9838.7045 20479.2939 375139998 merb Metal Homeostasis Mercury Detoxification Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 9169.2986 202533.7197 1335417.0993 15167.8565 25517.5188 5110.69 12629.5967 4164.087 7213.6412 9180.4454 6940.6894 356976.4431 15393.4249 12220.989 8228.4049 9135.7673 9135.7673 5864.5529 20149.6258 9600.089 8032.4396 10576.7737 13928.437 45202.8587 5763.8632 13795.7874 6176.4396 100224.2733 10909.2589 13010.6742 11731.1651 8675.3144 9057.7978 4194.2539 12377.3736 1841362 tdnb Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 28412.4962 24349.32425 10494.98783333 22850.82563333 22328.074725 7493.9069 90172.590525 41797.913 11584.5225 13838.79095 19753.209175 41662.7804 214624.13266667 16903.30405 16491.413975 20656.2507 40095.34215 40095.34215 16279.41196667 48150.406775 34595.220675 41857.52363333 13343.796375 16618.3248 14940.61895 17155.856625 16742.84445 38193.640575 41002.06455 16005.306425 21240.2183 10093.30865 20928.546425 12073.68785 15727.26035 17047.49955 346227113 mannanase Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 39127.987 33715.7224 14163.4282 19851.5978 5083.1772 22013.7108 21938.8874 74901.9362 20010.3934 24151.8067 29357.9396 464911.0439 31426.0478 26298.1024 24429.8319 40215.4081 40215.4081 35269.2203 31646.0888 24288.1605 43073.5097 85726.975 34299.0672 19830.344 26707.5384 36542.3632 40572.7744 57979.6718 28472.5256 32198.8282 28296.2824 17484.5693 32755.3522 11930.089 33659.2784 383461910 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 8170.9633 4225.0436 9597.4865 4078.0973 8704.5536 17575.5155 5417.4536 82954.7586 8373.6311 34337.5662 6906.7256 4532.7794 4532.7794 6046.6528 30080.8711 17461.3343 5280.6217 10733.5823 7289.413 6057.6181 6178.6149 9275.6454 4560.4268 19183.0093 7693.2336 19994.6784 4629.5546 5491.8214 10927.5582 4965.8953 8567.5289 317047756 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5089.5169 6192.5773 9226.1664 9553.6904 2368.5409 2658.5095 3952.1842 5719.4356 3376.1358 115656.2397 5968.5242 4548.8908 7172.8109 2486.2025 2486.2025 3863.1304 13347.1608 5494.2452 29668.9141 11339.0979 7171.4257 2261.6071 3156.4089 8102.5756 19506.1972 11913.359 4614.806 7835.5964 4212.9856 5464.9532 7035.9741 3789.557 8095.7664 389862683 ppx Phosphorus Polyphosphate degradation NA Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 18184.743 20769.8063 4122.0197 14782.3053 8316.3723 23125.5436 13581.9098 20677.0632 7814.7442 30844.7364 22648.7574 415935.845 14043.4275 13827.4227 24390.1284 23315.7488 23315.7488 14964.8328 69871.7222 8772.7515 9712.4247 27047.0466 77588.891 10282.509 11603.2391 14379.6129 47797.9537 57416.4351 14627.4924 22483.7654 9691.3312 19448.3359 24672.3022 8902.1014 19016.7027 302916139 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 6007.468 3090.179 4906.8242 2695.129 5334.0482 7354.1948 2621.6998 86589.9794 6501.585 4351.5606 2233.5366 2233.5366 5155.6413 12856.797 9248.983 10000.123 12876.9446 11418.1129 2963.2496 3478.6 11620.3643 4118.2452 13043.3272 8642.3819 9865.6984 4145.103 4538.4768 8894.731 4955.5134 7962.1802 336118764 urec Nitrogen Ammonification NA Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 4612.3822 11237.1688 2807.1752 69822.8746 3670.9535 8549.0969 6429.1443 4625.4254 7117.4862 7756.4018 9712.2165 2622.7678 4759.4124 352962570 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 14031.3476 7669.7393 45646.2767 107647.2815 17032.026 12741.0525 52363.3727 11501.6639 10960.5255 12576.5009 7594.068 302943.155 13863.1574 10797.6135 12402.1291 7713.3063 7713.3063 15384.024 19517.9422 17559.2978 5594.5655 7283.4346 10572.5789 5623.2552 7916.5426 25024.4271 15747.1663 33704.4745 23437.8441 34780.6926 11700.8396 9329.4496 8626.2682 6158.0551 6287.8243 321171967 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 26482.792 21730.8464 11994.3885 18498.8148 6114.0072 14675.841 24706.5347 20377.7022 29141.6139 26069.4957 19008.0069 453703.5212 15609.3656 26532.5801 29017.8462 19008.0237 19008.0237 14336.7159 54484.6542 19414.6091 20737.0664 139105.0285 19394.3108 17307.1964 17913.8798 33323.3391 23779.307 98143.5462 17883.6057 73502.9814 54900.4468 75122.983 32939.5546 33958.7873 66978.8666 139003100 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7526.1144 48725.2456 8252.683 10080.444 4957.4717 5520.9408 6904.796 15583.9641 11142.4149 38770.4697 6977.2108 137317.4574 13457.4165 15876.1485 7679.4175 11447.7044 11447.7044 8853.9356 21401.0032 15834.1073 13780.7575 15585.4142 15526.5499 5984.9677 11510.1503 11425.5589 14487.9195 27012.6915 39277.3285 14551.9587 19093.2736 9698.2216 18766.2671 10291.369 18433.4543 357636310 pula Carbon Cycling Carbon degradation Starch Streptococcus macacae NCTC 11558 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macacae; 100259.0588 32373.7053 10484.3293 11580.7666 6773.5899 34776.767 35734.8357 40568.8219 20135.8769 37011.7328 64752.152 339150.786 29627.1876 37870.275 27467.5865 35855.9987 35855.9987 17461.7722 46147.2808 31494.7947 37029.0534 27334.0623 23393.0136 20991.9697 31964.9271 44852.9165 28176.1598 69426.7836 18580.4174 60660.3405 33149.302 25236.8734 25646.3391 25439.7139 33484.7525 353543579 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 12328.4604 12273.5211 13804.8116 12710.4341 12342.7124 9477.8807 8593.3563 12802.75 20354.8539 7734.7895 378866.6995 18821.4051 18120.9805 10338.3098 7099.8999 7099.8999 14372.285 19285.0834 18790.3475 23130.3543 23796.7782 31437.9568 15881.7608 9247.3583 22682.4107 7629.1532 35176.2263 19860.48 23579.072 9082.7093 9705.7295 12954.2437 7871.5998 26331.5943 298379406 ppk Phosphorus Polyphosphate synthesis NA Xanthomonas sp. AK(2010) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 18052.0298 14964.233 15096.6805 9336.6961 6831.8512 12969.5357 9759.9028 10727.9748 13512.3024 12566.4465 7198.6829 353186.9884 19048.61 13811.6768 10635.3004 5337.486 5337.486 9779.6023 25337.3635 14902.7639 16304.2999 15800.9186 22505.8483 7633.5117 7936.2755 20319.5144 12422.1123 29872.6844 8208.6994 17690.7458 7088.377 9295.3732 9486.504 6300.9163 21139.5366 339511416 chitinase Carbon Cycling Carbon degradation Chitin Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 16146.5231 18135.421 4941.1892 11504.5348 8114.8321 12439.6013 12610.5956 8846.8221 10933.4407 15124.1576 19353.9446 230034.512 836252.7245 12593.567 10748.5237 6596.1593 6596.1593 7525.605 22611.8283 15358.2592 13129.4464 13356.0624 10027.2934 8393.7062 7566.9073 14355.1865 8840.3911 18572.1276 5374.4334 13526.4931 10461.1415 8062.8297 11320.4274 8780.6109 17922.6262 334893067 cysJ Sulfur Reduction NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 175755.3393 21575.5884 102333.6506 127493.8633 93964.7757 37929.118 69345.7803 156955.8339 116143.4951 123480.9011 88266.4428 67444.475 1561217.7716 76018.4169 98011.5513 150702.4461 104145.8484 104145.8484 53053.4911 314094.9982 66464.6343 357017.9591 205520.6487 282493.5245 467629.0563 171370.4444 94584.8467 65887.6847 229230.3321 158056.1577 138711.7035 105101.1161 80529.9151 127358.0792 45643.3223 629245.5363 115315696 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 22883.5257 18582.2633 5953.7224 19935.8712 8328.5401 39442.5766 10040.1745 10214.6063 18382.6066 28069.1209 15627.2328 288294.3011 13766.1951 19994.6675 29004.5876 27525.4907 27525.4907 18803.1212 51373.4767 13734.5817 237621.9735 75172.1538 23220.772 19015.4297 35390.9269 16366.8315 26701.7333 159965.3618 20891.3498 52973.3474 12131.6529 49565.6791 25987.6332 7856.5792 20308.053 54778451 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4900.5364 3399.0416 2239.0731 7635.1163 8633.1333 3518.0143 65729.2863 6381.5202 6016.9564 4002.4201 18059.336 18059.336 5194.506 8306.8296 7191.3336 6200.3589 7368.6686 9452.3655 3533.0079 4034.3918 7192.1276 6841.6576 16289.2933 5137.5391 7424.6165 3708.6944 6079.7269 5426.8045 3302.6304 9556.789 338811695 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 106071.4654 812942.9369 25893.4848 114527.1922 14465.7505 14554.6297 31101.1568 12147.9959 15952.1595 37147.1829 36910.9576 1473127.2698 242937.38 36339.3633 33684.8696 24804.1188 24804.1188 78299.3551 30960.1704 27208.5848 21365.9883 22295.3216 29260.8428 14397.4243 14524.2455 69825.0855 14872.1136 50853.6486 31445.7562 43270.1305 34815.2895 23296.5452 19885.647 19418.9252 124626.5976 145571612 atzb Organic Remediation Herbicides related compound NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 70704.5694 171218.3944 78943.2406 29510.2365 11573.4579 11645.1854 49801.0918 19216.1566 39886.4415 38181.9168 74720.6679 483025.3951 37034.7936 52148.4303 45009.8686 97037.8139 97037.8139 18416.0876 41352.5547 72710.6129 53798.7926 102141.1993 53437.0481 60519.2987 30765.1249 32232.1707 37616.6232 108753.8361 25355.5442 76927.4775 28534.9855 33139.6678 22383.1769 34469.2224 126076.4955 182416029 urec Nitrogen Ammonification NA Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 4634.2133 6753.8583 10845.3057 3722.2966 4054.5107 5335.1688 5996.2757 75360.9232 5702.395 8611.4172 7639.0804 3931.0623 3931.0623 3566.5455 9183.5389 3687.5658 8439.9367 12022.2748 13489.3568 7895.116 9101.4129 8234.457 11331.7014 5197.605 9491.5098 4421.6381 9262.1653 5810.677 7851.2382 6281.2847 290956049 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 9612.4835 12299.8163 13423.7981 9989.5929 8241.0446 6146.6683 4363.895 12825.439 10058.8019 6416.9531 131747.9886 5017.0222 12858.3124 7741.5095 4576.6984 4576.6984 14400.0214 12428.7248 15306.131 5357.313 55107.3988 6636.6134 13521.0996 3798.3453 31900.3473 6790.0796 18443.95 9579.5662 13109.6114 3471.4948 8996.0373 34010.0769 3364.4044 24354.3158 116613091 phta Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 82149.8148 12535.7446 20665.1038 19429.5528 54599.9085 9632.2569 25889.5849 18458.5272 53524.9577 19636.3976 32832.2694 41884.0454 309742.8222 96120.8156 65067.0352 136572.7035 44987.9469 44987.9469 17667.0172 31478.9337 14977.4825 22430.5889 85801.6194 19622.5531 12525.9616 15822.2252 35699.9247 9782.1871 60593.7382 15558.7934 28385.0488 9607.4978 16001.0528 14542.3502 9456.2274 105957.1122 88941527 mer Metal Homeostasis Mercury Detoxification Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 17197.5495 20882.6332 6499.3972 24746.7685 15091.9374 14494.0213 10228.7019 10217.771 11020.0717 23889.1907 7684.6992 333866.0281 19250.4 18729.5728 12557.8505 9667.6236 9667.6236 11733.7264 22270.2803 16716.6832 320228.5449 23898.5225 21673.1931 11868.0287 9615.5938 19487.0101 8303.4557 33311.7456 13586.3222 19689.8536 8344.0594 10386.0507 14357.2407 8579.5 21873.7717 260452426 amyA Carbon Cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 6955.7817 2109885.3862 1758362.5432 26195.0034 8714.3753 144754.4171 4373.657 3743.2579 184283.8624 6899.7372 102984.2753 10045.6193 9447.1046 13478.0292 8098.9582 8098.9582 7075.8979 9376.676 6436.6203 60769.3016 5344.6308 2577.6848 4257.5357 12766.0923 2752.3561 13387.9571 5603.4896 8851.1566 5356.7974 5137.8538 5722.9994 3585.3731 4708.8182 214031728 pcag Organic Remediation Aromatics Other aromatics Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7767.8429 11944.5998 14679.4254 12253.1631 5047.2417 3045.79 14917.6455 6605.2041 6958.7774 261537.7246 4203.6603 36532.2101 10011.8359 3802.9761 3802.9761 9648.7047 4643.347 6446.85 6965.7377 4416.4303 3126.3193 6349.8555 5327.8622 11037.8375 6831.0049 10143.8887 5097.7875 22355.821 9151.859 13692.8857 256392950 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 201077.1342 276932.9872 202043.2407 12132.3302 7631.9646 66247.0042 25698.3991 45287.4598 42017.1923 72959.8084 49874.0167 4493479.502 82659.0331 44300.5009 126797.142 96358.9289 96358.9289 35509.3016 72220.3819 85852.6691 114135.7286 143094.709 401855.8476 66089.1828 70408.9571 45404.3046 51107.4979 587379.617 99545.4572 99133.3227 44765.648 86610.6022 81931.4186 39671.9032 33868.4364 404401593 cmci Organic Remediation Aromatics Other aromatics Pseudomonas fuscovaginae UPB0736 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 39252.733 26008.2182 22169.0441 16442.3678 17363.3829 13959.2534 37155.4955 27972.7161 14572.2243 207705.2409 30612.3041 26972.8457 2962894.23 67445.3808 44190.7016 200132.5865 75012.2415 75012.2415 27545.0688 42217.5936 32396.4254 24740.5109 35211.3366 31393.4614 16513.5235 24416.7122 31016.5422 25493.2526 25985.7237 20521.1907 350713.4422 18214.0508 29564.5266 48187.2393 38436.4424 40794.7878 85825378 urec Nitrogen Ammonification NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 96129.4027 16309.0498 13654.6558 34941.4283 17415.1837 5752.2907 102507.4817 62690.5316 32217.3111 59697.0896 103710.9592 56279.2795 438394.3325 77381.0586 191006.9194 41250.1365 43179.8853 43179.8853 120198.7355 88065.3485 49771.2996 62047.309 136926.1143 33421.4769 43980.7441 50021.9274 51866.4159 59495.8157 208575.2625 113435.1022 53690.1424 99434.9282 55755.1627 92343.0251 48950.205 36373.446 229488431 bend Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7746.8754 7477.3598 8249.588 15953.3043 6277.9419 6647.3067 3893.6528 5310.7136 15611.0458 6468.9608 152755.1437 10241.1933 8167.081 15400.0205 5229.2049 5229.2049 6067.0217 14868.0867 10093.9339 5522.4388 6995.2921 7122.1964 4945.712 9591.2996 12946.3424 4342.7232 18646.5904 9259.5239 15886.5414 5559.0607 5358.1203 8479.7605 3938.2858 10229.201 112463111 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15042.297 8558.4816 11408.0544 15056.7649 17259.7801 10858.9041 7513.2129 10468.0805 12378.5825 5232.5437 339179.5296 15795.0439 20837.263 14942.0767 10731.4696 10731.4696 9946.4558 22450.401 12548.9178 18488.3219 35964.2016 17924.166 7151.2868 9223.5305 22919.1032 8613.1538 30579.2086 10156.4552 15747.4566 12653.9421 9847.0575 8374.0767 8444.8876 14725.6755 330812307 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 10084.6496 114266.6068 7313.255 31988.1481 13593.0972 7238.2691 6182.9592 22423.559 34176.8434 29117.6101 196287.9433 99001.4861 15986.0185 13119.6018 10289.3901 10289.3901 20700.1596 43639.8641 14103.6438 6942.7021 11993.7474 11549.0274 51910.0698 12179.5694 82932.1592 23677.6011 30873.1175 26364.8614 28103.1032 11188.852 10673.8001 12097.6411 12060.2092 51366.324 309308270 phospholipase_B_fungi virulence degradation NA Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 60037.3608 125640.9813 38367.0702 17780.5964 8989.4975 85173.5446 26697.0404 66559.9648 76214.6027 37095.052 66052.4615 609505.7461 33331.9869 61514.0408 98653.2153 42638.4153 42638.4153 31175.9023 59091.244 54980.8545 59909.6797 237240.3189 54003.1829 52065.5198 49853.0199 48619.5217 31887.1516 200804.4515 113451.1102 61610.8811 38427.2859 57868.3309 52102.158 25370.4508 436621.4974 161897607 amyA Carbon Cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 57871.9087 47024.1371 26558.8802 62371.9297 25178.0813 67820.7566 51086.7004 15688.0652 43172.8327 114711.4721 71935.8055 750491.1546 55916.9594 148174.7257 164998.3214 65307.6689 65307.6689 57950.4564 91549.5158 44438.8819 259295.3788 62269.1487 64191.1186 45974.5804 54906.7136 50503.5083 42151.559 208626.7023 85080.8054 95297.527 41626.1987 57009.6891 48000.4045 33738.0427 33695.485 99083451 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4817.5844 3105.723 3332.9287 3700.3513 3233.4712 9068.2384 4324.7022 1933.1077 2030.4469 164455736 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 41472.1439 223078.7235 85541.797 7666.2462 5009.1412 3710.8795 5307.6621 4677.0369 8139.4431 2688.6167 118622.1947 6623.7334 5894.4145 10078.7177 10078.7177 5558.6542 8344.8809 4743.4229 49123.43 162518.5303 8965.2023 2904.3961 3084.3367 885706.5607 3243.0663 12385.5218 64508.8278 7113.7004 2179.4859 292472.0605 5821.8336 28511.5564 7481.2072 391856974 amyA Carbon Cycling Carbon degradation Starch Lactococcus garvieae IPLA 31405 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus garvieae; 950995.4324 159045339 fccab Sulfur Sulfide Oxidation NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 20450.0889 8151.8774 19265.9686 726869.4477 6907.0567 11892.1391 9595.6607 5420.3778 12597.0882 13761.4843 6451.9893 259690.4413 12292.434 7391.3955 7882.0361 4432.3858 4432.3858 14232.1498 15898.9697 18173.6911 13333.4808 19321.877 14733.6695 7151.8115 7415.3673 18100.5034 7071.1613 29945.9174 12015.0414 15277.6468 6973.8282 8057.7622 10848.3264 6889.6725 18155.8819 99030557 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 6658.3635 6584.098 5898.1179 7891.0098 3656.8527 45392.2179 10064.5707 5728.8727 9559.91 7048.0897 145045.2724 6522.1785 8697.9936 9085.4246 4979.3139 4979.3139 12590.3342 26728.4238 8266.6409 6076.2319 4748.9429 10912.8102 9749.8773 13397.2013 7454.0054 30477.5845 14903.6695 22035.2942 22210.9978 11996.0938 9329.8016 10650.2435 15864.3341 26278848 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38084.3884 20893.8404 28021.5479 43098.6973 15934.994 8515.6666 87550.1558 34222.5082 27595.4025 32538.7686 36410.2258 20626.0544 714658.6731 56045.5224 38353.3412 26181.6987 22852.2174 22852.2174 18473.0597 40618.1383 34946.2571 40525.4496 42716.5395 45922.0734 17114.3222 17909.1815 46731.7005 22346.648 65891.0986 38669.21 50560.405 22454.8081 25600.4723 23978.0511 41278.6257 38470.9013 374709525 amyA Carbon Cycling Carbon degradation Starch Sporolactobacillus inulinus CASD superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 7608.5438 5590.69 37234.0705 11566.5772 11630.2418 3726.3075 3633.8568 4969.8039 10983.7469 4060.1961 188764.7247 9196.6991 9172.2983 8406.6109 3902.5425 3902.5425 6483.6466 20721.353 13471.1601 8266.6255 23148.0886 24374.7712 5893.6302 5790.1472 20222.1243 8359.7791 20741.121 7569.8178 17187.5617 11421.7076 8645.9467 11950.5901 7631.3336 11075.2046 291090765 arsc Metal Homeostasis Arsenic Detoxification Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 6336.1841 6392.0499 3902.0658 5092.1389 2589.0337 13084.107 12903.0222 2524.7398 100702.1947 7375.3861 5937.1653 5411.218 2763.5756 2763.5756 3813.188 13495.4778 7181.71 7757.6059 7383.4247 7209.5304 2869.1308 2685.6915 8671.0527 4237.734 13727.312 6070.7614 33495.9123 3812.7139 8441.4867 5065.2696 3000.532 27639.3523 219939246 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13695.7224 16256.908 6304.022 23923.8723 22270.4894 7604.0318 37793.2137 6944.965 16056.3384 16015.2917 28555.5719 261807.9158 13021.5993 20188.4502 16839.9809 33094.3503 33094.3503 8510.7094 45090.626 29245.8782 17731.8194 78706.568 8389.029 20185.3822 12407.0265 15535.6552 30842.9778 28974.0866 22089.6061 22030.8412 7585.9118 33365.6218 29641.1101 10195.6542 14188.6862 139003420 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6231.829 4826.7479 3446.8925 3770.5129 39911.6086 4893.601 3595.1454 89582.399 4626.5855 3498.4376 6466.5547 6466.5547 3788.2756 11499.1563 7980.9971 18321.2637 23328.5031 33037.6105 16115.383 4653.9124 8566.1733 19545.4351 18140.0419 7207.8726 9503.0858 3736.3454 4873.1006 11253.7885 3612.6371 46864.0302 343774302 trze Organic Remediation Herbicides related compound NA Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 6593.3176 18010.2081 3079.6206 358462142 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 19453.1268 13609.593 14935.1693 11162.871 10011.9952 3288.5177 3805.967 7473.9325 4879.3151 131490.3413 11488.9584 15827.4228 7979.0644 22725.658 22725.658 4794.9029 14018.5503 8336.3693 5446.4707 601364.3497 10219.2399 36662.8636 5797.3978 9240.2999 11517.4317 20808.9975 13226.6308 52401.8737 4123.0429 10829.0377 9346.51 8933.4191 36401.6737 320537702 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Treponema phagedenis F0421 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema phagedenis; 258318.5536 47004.2416 56698.8219 40000.2167 1195173.6176 107121.0914 393932.0751 75470.8077 101335.2656 113026.6566 97504.7857 997149.5789 89784.0001 127585.6929 116596.2542 127604.3614 127604.3614 89246.8593 131687.809 103586.6841 140166.66 192326.4389 95221.364 104382.0193 75570.2975 103999.3385 122631.2867 196572.9743 96438.5215 98368.6785 135347.3915 115335.4872 119890.7692 89967.176 85717.0696 302026193 hsp90_Apusozoa Other Phylogenetic NA Ancyromonas micra superkingdom:Eukaryota;family:Planomonadidae;genus:Planomonas; 3824.1228 4643.2616 2133.3424 2770.8972 3779.9585 5499.1657 4058.3085 8291.1875 2121.0567 4813.8832 2045.1281 2516.6507 4075.8454 2928.798 192286755 nitrilase Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9101.9577 22674.2186 8394.4089 2539.0554 2974.3578 10850.9022 7789.5992 6843.642 241315.6956 5837.6516 11085.2741 14182.1393 9320.9197 9320.9197 3705.5088 17024.9131 3258.9028 4836.4287 21606.9745 29468.5499 7806.7096 6537.2558 11201.8999 8477.7007 32767.2512 5085.4901 8201.0675 8360.0583 3088.3226 29137.1955 325961508 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 12402.6647 7176.511 15745.338 15375.545 24101.7166 10681.9375 8130.8846 28230.7857 22231.3334 12351.1441 332314.5324 272742.9058 28103.5375 11210.7503 12547.242 12547.242 11595.4772 11790.3671 10681.9224 13116.9591 18123.3026 10195.8764 4991.0581 10317.1168 14596.0982 10522.5097 22405.5041 7429.4062 33968.2815 8157.0541 15685.4846 13773.0114 12196.742 30242.968 163259451 nhh Organic Remediation Aromatics Nitoaromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 7800.6974 3807.5634 8591.898 9740.4879 9740.4879 4399.108 16149.7558 4769.1829 19487.4646 3049.8159 9751.6009 10618.9237 2698.7713 10811.9647 11831.3316 9194.87 2439.1241 9585.1269 8133.7897 357037305 dsra Sulfur sulfite reduction NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 51609.2716 20313.0932 55702.3123 61616.3665 16027.0054 162980.6131 12693.4717 20781.2599 21720.2784 10225.5934 212168.6292 20080.2659 52053.3565 46691.6019 23322.5805 23322.5805 21794.8397 14884.9318 38366.7529 8009.0526 46842.2454 5572.9643 11836.784 23270.7868 24024.6813 20867.8114 12202.2475 15712.3909 25288.2361 10680.1734 16327.2918 117318.4599 24223.0704 218438557 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4607.4245 2292.7238 7046.8022 6128.2954 6000.9617 6897.6178 3123.0713 3123.0713 7218.292 4450.8854 2162.2398 3132.3362 4661.8043 5203.593 374611347 vgb Virulence Antibiotic resistance Degradation Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 8622.7501 7094.0596 9697.6529 24894.9005 5045.7218 4508.9022 5523.0419 5180.2337 8562.9862 3061.2509 124061.6644 6762.231 9622.5768 2575.7903 2575.7903 5576.7539 10992.4316 49696.6032 6471.4363 8770.4466 9042.489 3674.6901 5171.7824 9718.3937 4926.3742 14972.0973 85781.3955 11163.0583 5947.7568 4270.0661 5534.7049 5096.944 13145.4044 347737949 urec Nitrogen Ammonification NA Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 13002.1244 17511.1584 26387.6884 4501.9347 4661.9632 5400.9563 18513.785 17819.3141 124056.6868 5787.4833 22904.8074 6772.3621 5256.3693 5256.3693 9773.3547 15458.6572 7467.7139 36417.3323 3817.1266 7370.58 24370.4815 6306.857 24304.1028 21586.281 11250.9418 11789.9267 6535.8604 11183.975 9082.2481 8350.1067 154174449 napa Nitrogen Dissimilatory N reduction NA Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 13039.423 6636.9047 11202.8641 20741.8356 6471.3434 8331.7057 6888.9947 2624.5219 10023.2864 11351.4853 6416.0343 316929.4137 96023.4455 8828.8453 10797.7246 5584.0415 5584.0415 16954.2728 19568.6824 15395.058 9548.4651 21518.5595 14530.8322 8715.6145 8860.618 17963.0752 9090.1247 22786.6092 22511.2648 14242.5174 6132.4589 10968.473 22892.5048 8412.3923 10867.016 13422880 arsc Metal Homeostasis Arsenic Detoxification Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 49710.0315 9373.3014 1079242.7861 10853.7106 7648.0254 27251.0424 16820.8781 36033.4442 92231.1859 38284.0606 281040.1908 70382.5914 16103.1595 26034.2858 38216.9086 38216.9086 15222.6045 84011.6392 18441.4154 321169.6723 52081.4832 34594.8507 66041.14 44317.1653 40555.6808 70194.6999 113897.5074 24008.9267 59090.2205 102693.9828 55497.4126 47560.5753 37260.5208 81239.5732 88814828 cda Carbon Cycling Carbon degradation Starch marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 17752.7664 81404.603 5239.2873 45181.0477 28045.1195 27570.7902 15030.9749 59354.1382 16551.558 292942.529 16447.0214 92810.3684 13596.5863 12837.3664 12837.3664 11575.2204 26058.6257 15319.186 16894.8313 13548.4069 21723.4547 8326.8284 9173.5243 16973.9239 77024.6771 38538.7582 18924.6538 19669.5231 10344.356 15835.7542 11479.0971 8065.7876 84597.3786 139002992 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4197.4451 2989.398 3478.6761 10433.5159 5369.687 7132.5219 2444.3633 1912.8484 3102.6684 2139.2444 302834481 Sir Sulfur sulfite reduction NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 14239.1334 8485.5804 259612.8045 23535.8193 6970.4214 14221.8039 12310.9062 6093.0607 14475.0538 18220.2705 11466.9281 341940.2819 33271.2721 17672.8465 9369.7346 8939.8038 8939.8038 10680.2809 20171.2964 16860.0553 23871.934 14077.9846 33481.9195 9527.4587 11623.0094 25737.2676 9304.8761 30858.2738 19753.8671 17365.0844 9517.9865 10046.762 12178.1149 7402.6502 24366.4499 197288186 arylest Organic Remediation Aromatics Other aromatics Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 10137.5014 12954.1696 6441.6033 16003.364 13783.2258 9991.6086 5689.8116 7972.5082 14317.7221 9204.8428 153711.773 25784.871 18362.4586 8086.2391 12203.0163 12203.0163 5814.4175 12840.1451 7674.0988 3963.9481 9049.2816 4999.8741 5889.3529 7561.3439 18585.1201 11565.4335 15450.7733 7216.2038 32492.8405 7178.5033 45878.3071 7151.6588 3873.6191 10077.8466 108805216 glucoamylase Carbon Cycling Carbon degradation Starch Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7822.6696 6101.1229 12971.1473 2973.6882 8184.2975 5182.8642 30548.6575 196613.0008 20211.5642 32577.4267 6339.223 6339.223 10186.0345 6236.5972 8920.6925 5511.8236 10393.4899 8661.2744 2423.7235 9180.7524 14149.8841 2687.1388 14144.4464 3100.2741 288345682 pcag Organic Remediation Aromatics Other aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11275.2086 8048.4152 13237.561 3668.7884 6685.5774 3365.355 6933.4959 21380.6545 2807.8969 157080.8184 6402.469 11412.5067 5707.0476 7305.7365 7305.7365 6608.2285 13436.7659 9933.2798 17199.2729 8623.5704 10599.3947 28304.9012 4084.0296 13352.3269 31054.6781 19673.2512 15650.0932 13567.1616 40563.441 9273.1258 23237.2348 4211.3239 11219.0634 390957116 amyA Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 15632.6961 7794.8489 5809.3487 4329.6533 6775.7507 6753.2721 7030.1327 5846.3367 447391.8705 5704.5219 7770.594 7349.7519 5869.0877 5869.0877 2829.3666 11709.3589 6153.7269 5586.746 36298.4491 11057.2689 4340.3051 12567.0201 17008.4111 15075.6647 12333.14 7262.3856 4205.5116 4389.7178 6382.2659 2526.7214 5152.1373 397884953 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Q2-87 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8800.5057 15837.045 9387.2553 7186.8287 9233.3547 4947.6608 10987.5576 7006.0147 3451.357 19812.0569 20503.787 4968.8107 126920.3548 5535.9947 5858.5185 5744.6819 5744.6819 14870.3336 22956.3251 4282.7052 16564.1024 7914.3088 5113.066 4175.2129 6258.5762 10631.4175 17423.6048 10094.2417 6847.9913 3498.7328 7891.6386 21412.959 3120.9573 6107.8867 319752893 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Desulfurococcus mucosus DSM 2162 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus mucosus; 4813.0764 6094.5463 5240.5551 3321.8957 2695.963 116611.4159 5220.4216 5592.9488 4546.6525 3735.1456 13592.352 6688.5591 5958.0158 11354.2634 6531.9045 6776.0934 3346.1085 6630.0951 10377.0674 10225.5521 10491.7995 3609.7616 5421.23 5638.3673 3386.2313 14097.5135 133915319 amyA Carbon Cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 37589.9618 49150.7181 15289.1976 22015.3463 48470.3133 11802.5717 21862.1802 11688.9107 14652.0474 5234.9091 189881.4463 7776.4029 23190.585 7366.3903 12168.1043 12168.1043 12306.1379 25031.8307 9849.16 15761.7706 38330.3622 34202.3147 9092.7126 7259.1417 13210.6044 12516.4015 79428.0969 18039.0117 24438.3723 6275.8058 18164.6955 16962.2444 6414.8205 16139.0961 303310537 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 36184.6379 19442.4889 49896.5635 26024.2938 10101.711 21152.0184 22271.4573 11967.8746 23746.7337 49014.0156 18038.6279 633626.9984 28342.6157 27967.8066 33558.2923 17234.3556 17234.3556 19675.0554 40013.8646 20610.0158 31228.8626 36734.0376 29028.5342 19380.1082 17250.622 38332.9983 15945.4672 57114.3115 26822.1483 60781.3387 14706.168 16562.2415 20120.8264 15473.1729 45673.1223 156446963 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26720.9951 5548.6459 13033.5246 12780.9777 8595.8999 6743.3113 8552.7303 5015.5187 13446.5701 226796.2549 77753.1606 199067.4909 20933.742 9328.437 108075.0063 5200.8534 5200.8534 6963.0853 20193.9155 12615.8242 50046.389 16825.779 11736.2128 12205.1277 10901.6989 13693.9703 7353.4474 25059.5303 58605.8335 18031.6923 7891.9315 149650.4752 9742.207 6302.9206 13514.4863 225559212 nitrate_reductase Nitrogen N Assimilation NA Ajellomyces capsulatus G186AR superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 6609.5826 6873.4098 15847.5653 4349.361 22740.1252 6563.159 9575.5475 3810.0142 199795.2266 7399.35 7042.4467 7346.7523 4426.3097 4426.3097 6481.0857 11984.926 10023.3931 7440.5645 11717.6214 10079.3407 5565.8853 5518.2814 14363.9987 21791.2362 20312.2163 17527.7911 10762.179 4178.8826 6072.2694 7338.4912 4351.9775 17448.2182 350275738 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 6278.1652 7153.5283 13166.8565 4320.1393 87292.2796 3337.2507 2893.7826 79344.9771 8967.9172 9623.6206 4132.5711 4132.5711 3060.3614 7541.6485 5035.326 2960.7548 3930.8912 8509.4248 4408.6131 15711.2658 8712.8124 7750.799 4146.9218 4620.6351 7422.5593 2649.85 156523572 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 21121.4122 14821.9699 10909.5381 10516.30755 19384.8483 211828.65845 33177.17035 6212.82615 276487.1385 14059.3975 11439.3417 13884.1409 6255.3573 6255.3573 21710.00155 12227.44 6974.86605 16547.7289 7671.396 37774.0948 10512.74955 13782.2004 10912.34385 9511.3131 5732.6846 269216321 ppk Phosphorus Polyphosphate synthesis NA Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 115329.1152 398527.9383 27515.8544 45708.4883 9543.5496 11050.5045 43344.8984 29798.2706 43521.4436 144142.7778 61384.9284 726989.567 55492.2032 94225.2495 147914.894 40505.2253 40505.2253 36814.5555 67823.2527 22745.3672 67369.4593 60703.2015 115656.6815 22072.8412 23282.8356 46894.9834 26320.5503 88435.7284 29588.3729 43403.3816 18887.0641 27353.7265 46423.44 48395.3305 31793.2679 90201441 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5363.8071 6569.2005 31495.1351 28355.8402 6716.1955 84582.4477 14564.3541 6458.5565 20093.4041 4111.8015 4111.8015 3340.3185 10015.57 2780.3065 9894.6399 12874.6766 7600.0221 1954.5887 9927.7313 18642.2148 8760.8675 87239939 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides aromaticivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 4203.7817 10058.3786 2485.0736 11071.9993 72751.8519 7120.4401 4177.843 4445.5165 2191.0855 2191.0855 6758.3181 4961.9783 5623.6864 4965.8877 4041.4731 8342.0091 11776.7841 4634.9232 8630.9938 1709.5558 4591.4686 3223.1007 2467.8098 6258.311 285017378 ppx Phosphorus Polyphosphate degradation NA Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 5712.1917 8894.4863 11987.4857 2530.6991 3773.744 4767.3947 2406.8423 80738.5238 10898.062 4755.6111 3867.7911 3891.2204 3891.2204 3519.464 7543.4098 7994.4726 5314.2906 7246.295 2649.1307 2836.0792 10015.8108 2432.3808 10291.0965 6181.0425 9591.4648 3389.9947 6592.983 3479.5096 3312.8832 94424683 ara Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8125.3798 5544.4308 7769.7888 2961.4418 2336.186 6568.1616 3787.1818 6919.1508 5338.1007 381670.6978 4763.5406 393199.9258 720772.5315 8253.6819 8253.6819 4992.6601 13625.8164 3788.7099 4463.5955 14241.6375 42232.2191 4021.565 6094.6083 4412.6966 15041.0138 6152.8341 5740.7125 7568.4959 6418.9362 24758.4807 11338.6426 12957.1954 214044874 soxY Sulfur Sulfur Oxidation NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8277.1957 4194.9307 4336.6916 2765.3693 4904.1608 7462.6217 8629.3777 164289.1813 12680.4097 5881.1153 5409.3357 5409.3357 11124.6178 3298.8864 4563.984 19114.8686 11797.0939 3343.14 15867.1514 9095.3053 15000.8635 3407.637 40047.9424 4477.0719 133778508 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 14400.0795 18524.8884 5412.5519 3715.7922 5353.6442 7468.8897 4063.8613 106976.8549 6378.2174 6012.3569 22071.9806 5933.0453 10563.2585 6850.8619 5695.9026 12320.2117 13850.9508 4812.026 3408.9262 11407.0927 3195.7667 16284.3732 9332.074 8195.8143 5771.5459 7023.8482 4389.7233 4267.2465 15215.2862 261205350 cellobiase Carbon Cycling Carbon degradation Cellulose Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 24956.8737 11402.1179 32025.7802 29411.4865 11145.0655 40872.075 18625.6923 25625.799 13237.6816 21605.0614 294148.3364 10084.352 21365.0358 22089.1811 18669.1763 18669.1763 9362.6051 23050.0092 17819.8125 34585.9631 252758.004 30125.7712 9456.9327 14821.143 13377.9885 22339.7148 35383.29395 23528.3916 16481.4625 13525.5453 12843.2505 12309.4807 15663.4735 20053.9622 197696888 terc Metal Homeostasis Tellurium Detoxification Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 21138.4003 28824.572 133024.3169 23067.3744 6187.4544 66707.4482 54142.081 10208.8338 12459.4188 10146.3027 238913.4115 11511.2 18193.2293 47738.23 14330.1952 14330.1952 42779.1228 23921.3236 17203.6364 129088.088 21368.127 7756.2398 21250.6007 20289.0962 34737.9223 9178.0113 29318.5126 16225.332 30317.0533 11544.7868 19321.1933 11630.0421 8772.6967 9799.5861 282948471 gdh Nitrogen Ammonification NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 4946.7527 236393.6224 2194.6855 3768.6969 1878.4568 3561.4581 6516.9252 2108.0581 70298.4809 8493.9757 4056.9397 3600.7771 11179.6113 11179.6113 11472.298 6111.2958 5014.0488 3738.1504 7909.147 2861.1625 2854.3661 11126.7842 8977.5878 8132.2568 9831.7826 9765.3123 5025.1705 4016.47 4180.3663 3362.9987 10708.7922 378590467 limeh Carbon Cycling Carbon degradation Terpenes Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 120726.4379 155679.3874 36105.4854 142608.2099 369119.6105 75880.2457 79554.7868 34343.1243 44153.0558 84339.0958 87644.9104 2212654.4553 81513.1365 55570.7469 130457.6156 100100.1562 100100.1562 43399.7138 156717.7079 74647.5802 112575.9592 68569.5866 40013.5621 65573.4171 77881.2981 199331.9228 83275.7694 159778.2263 72527.2959 153645.2379 74893.2738 84700.0408 105945.5878 59317.8678 102739.8668 375078155 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 10608.46325 10133.76995 11279.70865 12234.9014 6378.893 6282.50005 5204.3239 8221.8136 10450.5165 26795.55305 146222.74645 12729.3652 8582.36245 4625.34535 4297.7961 4297.7961 6187.1433 16544.3738 8731.9821 11453.0898 13205.85835 19117.2826 6985.0309 5745.9384 9884.7187 36485.7712 17976.6369 7319.45615 14400.68105 4012.20025 8626.9637 7737.8515 13913.8558 12136.11095 282951781 terc Metal Homeostasis Tellurium Detoxification Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 19608.2964 36558.3431 6871.8885 9799.6674 5042.6628 3153.3411 6041.7655 5232.2351 21599.9654 11524.9162 11406.9631 246881.3621 8684.5071 7038.4565 4589.855 4576.311 4576.311 4490.4055 16951.8651 16008.5588 24935.7019 14423.8935 96410.8652 13041.3167 7952.5266 38732.2459 26822.1147 15758.1216 12542.0862 14209.5951 3745.004 7727.4569 6605.0794 9150.0791 8619.744 13473384 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 4041.0703 5135.7063 2737.0532 3000.0631 4865.9626 6851.52 3923.7138 3923.7138 2977.9642 6887.6132 4213.5884 5854.7301 2174.4697 2791.2285 5827.1593 2538.5308 7799.1612 3856.8575 2975.3451 10655.7205 3186.0406 5013.942 78101823 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 37840.3025 10982.4686 27847.313 30945.9389 65908.1902 79497.2293 103164.6915 51008.8289 14496.9893 34862.8137 25653.0461 46244.9024 515431.0697 29221.0997 32691.6681 86297.0161 84820.2041 84820.2041 26240.4011 50560.3835 57218.905 25431.5808 37186.6487 363430.1312 19180.1527 22183.2929 44895.0445 95288.9314 56499.9805 46416.2676 39944.1175 19571.6819 56024.2354 37604.5202 32515.2781 32618.3096 291536038 amyA Carbon Cycling Carbon degradation Starch Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 18331.7378 3278.6995 17738975 ppx Phosphorus Polyphosphate degradation NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 787384.3722 139143.1149 310120.1953 433614.5691 1214912.0009 228668.4879 233588.0063 843506.7427 314028.0602 478359.9167 796984.5979 440957.5851 19045515.1312 501131.8502 477825.9585 813362.3526 535672.6108 535672.6108 333751.2652 626467.1211 459549.0396 459164.9867 543132.552 512031.4315 246356.8965 299719.8138 698668.6046 318512.4874 1118260.8356 875775.4078 709290.6936 265150.6045 276742.4639 388333.8588 262075.8115 775326.2337 57224216 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 11773.0143 7467.3119 11780.1051 7036.4121 7070.8508 7039.7349 8310.1726 11513.2527 4289.6182 185731.9284 9167.0211 13248.1583 5306.3905 4504.02 4504.02 7760.0662 17380.0656 10112.9259 11964.5632 14433.5616 11809.0843 5972.3984 5861.7869 13036.32 4037.6979 22313.7919 15308.7054 15436.4106 4699.7036 7236.8051 7843.4 6121.5107 16802.9451 295677028 ben_bcla virulence NA NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7018.0844 19593.6634 15743.9478 12710.4967 9135.7156 34707.438 5110.986 8253.1752 13099.7075 15568.6538 137494.1694 7724.3681 13663.3002 22423.1613 6888.6735 6888.6735 7282.1991 14105.1283 11164.5635 5500.2393 16026.2243 20813.905 4831.1101 45120.4481 12476.6145 19795.989 68699.4164 19495.0551 13699.1545 6330.5577 6506.4889 5260.8469 6401.5327 5902.968 227538208 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 11618.4796 6662.1138 5421.7468 2077.297 6390.766 2446.7466 219496.1799 7684.217 137767.0366 7882.8734 7882.8734 10107.9881 37365.0199 7738.1852 12431.3194 5353.5695 7357.0935 5450.5052 23492.6266 6495.0689 11116.2728 8516.6341 6182.4716 5076.5663 4946.1227 255293023 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 51274.2974 21414.3432 164010.6452 19007.548 33967.2486 11592.7659 15214.4669 14047.382 14456.9311 32177.3464 37457.5908 374871.8114 20159.8536 29536.7495 58510.6614 21551.8628 21551.8628 20645.6963 52357.4644 28864.3297 24058.5492 107891.0031 26845.9017 175899.6433 27856.1471 32689.1942 76101.7059 110033.0262 30698.7052 41740.5933 32155.2833 43616.0241 82430.1632 17439.6346 21052.2256 163262095 norb Nitrogen Denitrification NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8026.5327 9440.8338 68075.4004 6547.5796 4512.9864 5190.0432 5291.6611 3944.9452 3944.9452 9012.4131 747607.0121 17877.923 14527.7525 5049.6767 9919.7014 4994.0737 18368.6892 5643.9527 5687.1551 11537.4507 7899.8631 16962.4953 162568573 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10209.5964 9716.5048 8957.6247 11289.6583 12926.2733 8404.4942 3552.2026 10727.9771 13535.7423 6407.7264 227994.61 16460.7678 13705.0593 8380.644 3871.7765 3871.7765 6133.9664 19046.1887 12077.9525 13715.4763 15414.0945 15579.9219 10160.0464 7041.4736 13580.0717 6676.3554 25264.2134 8932.1079 15702.9843 8428.5119 48905.2154 10686.5376 6979.799 17636.6366 326696726 PRI Carbon Cycling Carbon fixation Calvin cycle Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 13880.1299 525376.2015 18193.2505 7417.0057 20084.0079 13191.8584 9399.9304 6946.5503 16178.8003 64457.5295 13987.1405 132710.5843 78870.2789 10564.8835 8272.7737 14747.8115 14747.8115 8207.6894 18076.2241 4994.2466 7492.2976 12616.1267 9629.7961 5633.3819 6830.5784 10226.687 35631.1652 33519.313 38268.4696 22003.1615 89812.7546 10793.3562 10818.7356 6278.7134 23867.1353 336255501 cda Carbon Cycling Carbon degradation Starch Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 21978.7155 7160.3235 467782.6208 20088.3888 11348.6911 262681.0865 113301.9807 10774.5465 9965.647 45153.1205 138891.3263 13810.9049 49322.0154 241584.0344 27456.9313 27456.9313 6511.7072 19039.4968 9173.6057 26472.2864 12283.0038 31864.4991 8141.1482 7000.107 12956.4886 7868.0931 87601.0425 33296.9802 43391.1128 5462.7892 11341.9479 12512.3621 9151.4329 45425.6559 240008799 cysJ Sulfur Reduction NA Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 5688.3045 8758.8774 11916.4962 9694.3309 12982.3001 5303.7003 6882.3936 23748.8054 5325.903 25749.9544 59917.5732 5204.6793 4174.8717 4566.8113 2052.992 2052.992 2717.0394 13199.7182 6805.9757 13209.9443 3757.7736 36869.8634 2549.047 9791.1785 4471.5839 12008.6632 6472.27 5876.8599 4053.8184 6227.947 7175.1653 4633563 nosz Nitrogen Denitrification NA uncultured bacterium 696F superkingdom:Bacteria; 10523.8707 8674.2191 6805.8415 28264.5399 6278.5548 6121.7392 9559.2069 9607.2322 4790.0641 224510.595 7030.4494 8208.2114 10911.4826 5132.5536 5132.5536 6710.263 13269.4645 12152.416 10576.4517 59464.3187 87108.2615 13473.596 4829.584 12327.1618 4185.9362 23482.75 12471.5433 18975.7495 9112.5884 6372.4042 9398.973 6697.9984 13241.0376 323358528 ara Carbon Cycling Carbon degradation Hemicellulose Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 58098.0423 18273.3005 1587674.6149 36691.1395 34320.0105 26158.1636 33193.295 18637.4216 24198.34 61550.2178 28457.0542 625227.3751 44202.1661 66584.2262 44072.0548 39394.5879 39394.5879 24780.6504 49176.9347 45232.9115 67115.705 135565.1171 75907.0073 26880.6625 17952.1696 53175.7601 59726.7629 104175.7012 53761.7394 59093.3621 26870.7712 43537.4216 37227.6425 19625.7947 32335.4703 321171897 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 49282.0054 59910.7019 26928.3522 4329.0405 7441.6735 4240.0894 4240.0894 86346.4231 4091.0357 41521.5314 3667.1235 3723.2223 2249.5632 8113.3657 4126.2388 9636.6619 515801.9397 206572840 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 10752.8158 5503.5577 8229.2643 13578.3841 32868.711 6165.6675 4943.4545 7286.4375 12110.0595 15017.3511 145351.4661 12459.0785 9610.8642 5130.0898 17041.0489 17041.0489 7701.0206 15392.7285 9600.4886 12311.7862 10797.515 14929.7515 5630.7841 7143.7634 13429.3943 10053.1417 22380.6025 10387.3437 14452.7471 13181.9155 17483.9046 6992.2372 6104.6467 15547.8802 164455348 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6551.567 6256.9719 2758.886 2207.2845 6179.755 6110.9503 70243.5555 23712.552 204311.9956 10226.9037 6188.9128 55202.4701 5573.3482 5573.3482 2992.1303 18291.9827 8863.0778 11648.3375 19355.6558 6743.2675 7586.0294 5116.6562 8401.9675 4768.2903 14535.0435 10185.6263 10850.3352 5214.5528 41146.2944 7443.8607 4537.3598 45801.0378 333748523 urec Nitrogen Ammonification NA Desulfotomaculum carboxydivorans CO-1-SRB superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 9637.9884 6235.9007 19479.9615 6022.7758 23649.8222 13464.9937 7553.678 4553.0888 5296.907 202817.2786 10419.3221 6656.862 15273.5571 14759.3351 14759.3351 3395.3084 11426.3364 8638.2148 8560.5787 7216.4723 4820.8029 3873.8241 5343.8054 10087.1842 9935.2433 17806.6728 10120.1637 10333.8966 4020.1998 6873.3584 6160.4185 5679.8231 291578776 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 9009.4261 4502.1255 19354.8306 4391.0829 3801.3822 2313.0656 9666.5301 5013.3348 9511.5067 120000.5018 5892.625 9174.8818 7530.4053 5886.8752 5886.8752 5168.9721 24251.0761 8912.9507 9767.6119 15481.0667 4679.7376 6358.4512 4996.4437 7764.8611 25512.7802 15253.2351 8029.3247 8624.519 3842.2238 4994.293 5811.6797 5522.905 7164.949 119716426 merb Metal Homeostasis Mercury Detoxification Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 88532.1112 6472.6015 12881.1627 4822.2186 158916.2602 10512.1875 7664.4735 9612.9071 11774.6739 7740.5516 239006.0121 13662.3929 10527.2205 16315.4775 75225.2937 75225.2937 21877.5713 15585.9969 7077.5904 8318.5458 48551.295 14257.3145 5840.5162 27368.8564 14503.2685 181206.5772 118867.7917 10008.6437 17740.9856 8028.4703 11649.2026 29679.8332 8803.8777 479036.4872 325916102 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 45037.0724 26927.2987 9039.4498 7645.6315 4347.5234 19425.0558 179547.3626 36815.7083 51706.9873 37769.2661 35113.9633 687652.7754 33861.6073 41400.4614 56110.4826 55841.3733 55841.3733 74456.2649 80950.3457 30958.9149 25330.4135 44449.636 17618.5044 47528.9991 28020.4375 50088.4016 78070.3428 102052.5838 40362.4423 89437.9127 49175.5439 43497.288 95555.4798 26851.3033 115907.2353 83815482 arsm Metal Homeostasis Arsenic Detoxification Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 21506.8263 17455.7405 22497.7165 12347.0173 10422.5869 117185.5381 7387.3921 18629.3226 23784.1646 23491.1894 257147.0621 14957.6313 18007.0603 13768.4659 9849.1561 9849.1561 19222.5319 24161.8265 12907.0875 11192.1201 40257.7153 8167.119 10694.0116 8201.6845 31514.3027 15121.8962 50328.1154 16932.447 24888.4549 11878.5655 10838.773 16267.7564 8756.3261 10999.3683 384526225 mer Metal Homeostasis Mercury Detoxification Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 18751.5183 33078.1963 5781.7569 7562.9686 13012.6024 9506.9308 21117.7731 13967.6896 20795.1928 8618.8726 235985.4954 11773.4227 15861.831 15188.3448 11672.932 11672.932 11541.5554 18962.2345 11589.5327 11116.7633 13500.1599 43345.547 6701.3197 9696.585 10871.2873 21382.6995 32689.0853 24543.3796 18655.9153 6663.2925 7118.0598 8423.7431 5777.4594 15636.0997 226350055 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 27877.8986 10366.263 23750.3884 9591.852 35150.4189 23915.1143 6073.5748 4507.9291 12203.7952 6890.35 133632.4546 9605.3825 12073.3791 57890.856 9471.7863 9471.7863 4727.1278 20847.0254 7762.1711 94661.0483 12765.183 3906.1784 6115.0527 21348.927 6449.6887 25583.6481 22803.7533 17942.4683 5056.7656 9568.2382 8781.3508 4349.7707 8730.7669 71848825 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6953.2904 23894.0611 10762.5116 32235.9635 2943.2247 50728.9466 3936.9608 5409.742 5701.6687 5565.0213 59623.7482 5813.9908 6528.2582 12764.7939 12764.7939 5911.3007 4042.1967 4603.3991 5883.2984 7024.0437 4956.9809 5765.5453 4210.6917 7503.1592 4752.7054 7729.9338 2500.4528 4019.1539 12029.9774 3046.0483 6024.1693 299749557 pec_Cdeg Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 47704.504 16016.7935 19750.791 46941.0932 51553.5398 12099.6374 33107.1501 22076.9359 56323.0679 27095.8071 27850.2659 17144.0013 733649.2423 43970.5991 41152.7442 35835.1229 16554.6122 16554.6122 20529.1076 52593.8628 36084.4473 35163.8752 49919.2924 45352.6778 19854.3878 17134.4127 38271.5731 17181.171 61862.9989 57959.0706 53100.8751 20111.0143 33966.2755 21801.9986 62153.637 52513.1326 118697686 catechol Organic Remediation Aromatics Other aromatics Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 27082.3467 9306.7393 25939.4544 13043.1469 6032.512 2979.7529 5465.4558 4576.1358 3832.0297 11421.1358 36059.2359 163062.612 17820.0664 46133.2663 11969.3669 8883.7301 8883.7301 4050.0644 37230.256 19289.3917 11993.8928 47705.1548 4284.9958 16800.9562 13544.327 7190.9404 20286.4681 21790.3092 22759.0337 27774.1317 6311.3603 46207.4962 14684.9613 4291.2517 56663.8556 319951875 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulophaga algicola DSM 14237 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 6747.4828 6047.7143 8123.0432 6203.1465 6057.3163 5602.5331 7450.0935 3393.817 124272.0495 10941.1724 6531.0286 4115.7291 3507.7252 3507.7252 5009.5418 8267.3932 5762.2737 8796.9209 7591.5296 8490.3169 3073.8172 3790.6901 8085.4117 3708.3697 22302.7632 4938.5197 9457.7901 3355.6995 5734.7017 5126.4642 3551.2631 9084.1083 112464191 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4172.8137 5122.7363 4546.7799 8403.4511 5097.1679 7454.6481 2878.2347 75797.8322 5143.1299 5648.6808 5648.6808 17310.0656 4178.8037 4619.0096 7256.3566 2822.52 2397.0782 5815.9584 10394.9099 3553.8469 11451.3153 5003.7593 2358.5535 12837.5934 374657856 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 26183.7889 54197.7224 15482.8814 29963.8292 6659.7991 15477.2368 24062.9819 24392.1054 20606.0492 20739.6575 38429.0676 458399.7857 29084.1475 28246.8088 27649.3155 8207.6989 8207.6989 18597.8231 31939.8653 24609.8861 27192.5134 23273.2455 29171.905 15839.7473 15565.362 39230.5188 16740.7076 91479.2835 28152.3528 36293.0087 17882.0683 20586.2513 18284.6256 16754.063 36352.3269 158331393 bphc Organic Remediation Aromatics Polycyclic aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 71263.0289 164197.1975 25772.5389 151509.3114 47791.8177 23410.2606 38316.3159 38223.0685 62377.5024 407727.7108 42502.1945 1050288.8446 99162.9476 66098.1886 110251.9229 85994.4044 85994.4044 79951.8987 60043.1995 33052.1258 69158.7037 102599.8554 47474.665 29247.8508 51476.0188 66591.8313 18374.4258 198540.0124 59921.7897 88141.6205 62995.6437 35137.4854 58136.221 153785.2804 21060.2042 312166907 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 86111.8755 431658.5788 19255.2539 4445.348 2560.7655 13274.4439 4335.1885 2534.2752 2534.2752 9029.4633 5464.5954 8723.5309 2345.453 39245.7484 4678.3897 4441.7251 8682.6854 27831.4977 14276800 dsrB Sulfur sulfite reduction NA Desulfotomaculum geothermicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7330.1826 319967.225 5743.5549 6218.2925 5513.0134 2071.6581 3493.6697 5472.8923 3405.5862 71963.6645 5866.3535 9904.3363 3869.0909 3869.0909 7388.057 20537.4827 5873.9429 5475.1615 6550.8695 11665.002 2858.7921 4178.2125 6113.1192 5735.8909 17173.701 4670.9785 19414.1451 4833.3233 5029.629 364571.532 3543.3357 31770.3008 408527397 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces davawensis JCM 4913 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces davawensis; 78428.7802 16683.6978 45805.5545 708988.2329 59723.4636 16238.1097 30382.6884 37319.2528 24355.9389 39470.4489 86807.1815 30729.095 777761.741 123371.8314 109073.6166 51661.7838 53133.9649 53133.9649 35472.7969 96627.3 53464.6028 47788.5021 253743.0483 89589.1289 28620.7942 32974.4839 50090.6772 33549.8565 503223.2258 41181.1061 109378.9147 26950.3349 48720.0953 79786.229 52703.9408 162302.7777 407698255 alkk Organic Remediation Others NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 13172.0432 6542.0938 3686.2272 5538.2962 7783.8468 9049.8357 11523.3914 4199.9489 178963.6412 11646.1139 8865.7817 4866.1075 3784.1494 3784.1494 9231.001 17768.8739 9756.1212 11183.78 79550.3022 13478.1609 6052.4253 6990.355 13360.8208 6200.8075 35534.0816 12894.6939 15672.2872 4891.5424 11535.3396 11650.6447 8198.7213 17624.0762 196176604 urec Nitrogen Ammonification NA Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus chthonoplastes; 38532.9204 33738.0834 39550.2566 13755.8156 15168.8909 30188.8525 37330.4991 17168.5907 38099.8845 77302.7483 33249.6055 735541.926 37836.8644 36211.7463 39951.2775 34460.9138 34460.9138 24373.2795 97416.1092 27921.2609 65956.556 30683.6882 74314.9858 21818.5472 61961.7446 48868.2284 30556.3912 78684.1398 50960.7314 57571.1591 39517.9221 69299.3795 47434.8441 145565.0851 62585.6798 391857335 bphF1 Organic Remediation Aromatics Polycyclic aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 7198.7938 8886.2843 16347.3168 10030.7342 7560.4678 5347.6316 7120.3595 7861.7425 4784.8929 3287.5385 113563.1512 6628.6439 8428.2967 7641.0077 4737.6085 4737.6085 3891.6396 14426.9622 7524.9163 4804.657 4949.8129 5194.1978 3922.2935 4404.9603 11710.366 5239.1279 13139.1761 5882.1558 10239.479 3643.8787 6581.06 3137.684 385867138 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 41517.2843 3665.1107 4802.5648 3367.2755 12054.9534 8700.5635 8688.9245 270895.3302 6969.1835 12362.8499 19257.0208 10185.0832 10185.0832 3860.3282 13691.8898 23004.8867 9828.8511 7198.975 8660.7607 4434.6055 4681.3538 9639.9743 4347.9225 20276.9472 7076.5403 12190.3816 4931.6492 9766.6183 9556.8611 10856.0767 10758.3132 302035416 pchcf Organic Remediation Aromatics BTEX and related aromatics Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 33909.1105 58474.9611 19221.8957 1086423.0793 45694.2267 16624.1051 35674.0601 26266.4907 22742.4934 53251.1262 66014.4885 1065064.254 34509.2086 217744.2079 44829.0981 36892.4871 36892.4871 14623.7132 73983.7683 42088.3333 32116.5973 163333.0061 53002.2303 20966.7726 25780.7047 57245.491 43380.1239 63993.8938 61302.1974 48757.2619 18258.1033 42003.1437 50763.4085 26899.2996 34481.2204 407649008 atzb Organic Remediation Herbicides related compound NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 150534.3458 5593.8068 23008.6758 8987.0326 20605.8012 10463.6013 2960.4968 9128.8726 21191.7179 16705.0316 139702.4358 15756.9607 9694.5307 29172.4311 7670.0546 7670.0546 5324.3296 23437.1613 13286.5462 105541.0344 28351.8179 5821.7507 4913.5868 7972.9414 37544.1929 13430.0052 26298.6397 12942.9842 23481.4667 18772.3869 11742.7327 26980.4525 5958.9684 14967.2019 84383974 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 4984.2871 118248.2347 8062.7162 16920.8142 2152.8741 7525.132 2619.3961 3558.7463 4198.7519 3898.1506 108837.9938 14049.4497 16595.1863 9866.613 58973.9474 58973.9474 4452.6983 9675.9036 5292.6201 6620.6904 7524.5278 5882.1866 2804.669 4352.407 8929.0939 6115.7395 18351.0479 12609.095 16760.8911 4677.99 9219.4603 5703.0947 8009.2735 40756.963 237858253 GAPDH_Parabasalia Other Phylogenetic NA Metadevescovina cuspidata superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Metadevescovina; 14365.1033 35718.0984 46823.8774 471266.7559 558239.249 18825.6264 226293.0596 6543.46 35658.3949 61975.0241 38097.1649 587423.7282 90253.9094 137383.5473 83358.2559 52409.0127 52409.0127 59459.4657 159760.0255 176289.6558 21367.3668 28026.5359 10897.8983 11026.4386 116169.0377 375588.4522 50118.2948 377513.9958 197421.4827 267217.4813 104506.7789 92003.234 136943.2098 42485.8726 11273.2956 326695240 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 6029.3303 4802.0802 2416.1729 4921.3247 4760.5455 3674.7899 97199.8165 5819.7294 5600.071 2955.9669 2955.9669 11155.6114 5962.3329 5737.1607 10499.8396 11311.6352 4561.6883 3855.8306 8624.1026 3127.0365 19698.9224 11033.6001 9049.707 5283.3802 4991.6341 4337.2856 3653.7357 7378.8868 114544952 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 17238.0489 1294081.3407 406195.5506 2482.4314 12891.3424 9061.9251 7290.5962 10876.4302 10515.6809 273876.8532 9116.1866 11512.2613 9034.7023 5556.7849 5556.7849 7447.9219 15795.2718 7282.8606 8586.4828 20637.3553 9746.3013 5857.1665 18859.5407 9996.8452 10386.6544 35397.6056 13100.9497 15034.3666 6894.2889 8201.7865 12731.3982 5530.5607 20307.6253 332592289 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 235368.1034 5818.7503 25181.8331 192077.8185 73077.3982 77890.6167 47230.7513 15987.655 8621.0645 8621.0645 62578.2121 17353.2201 8578.294 9192.8109 6517.6407 118190.3511 4919.896 15431.394 3183.4224 6102.883 7292.7195 3043.1678 255957283 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5540.5482 4218.5522 4097.769 3297.1832 4944.1551 4867.9799 149486.8819 5011.7007 4430.457 2459.1731 2459.1731 4400.0873 9614.0546 7553.9724 4894.8573 6040.7114 4970.1251 2536.5828 2717.4686 8414.318 2610.2433 11547.2552 4955.5067 7629.4337 3423.911 3578.5 4956.1364 3531.8264 7822.9404 308433420 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 140616.186 25221.9714 26369.3474 18769.5524 60631.2494 16872.9443 97253.6377 191701.2844 61338.4958 68507.6326 153237.0267 80319.608 1168307.9603 130084.812 42369.9128 114467.7418 211213.5582 211213.5582 53118.4122 139806.8812 70686.3167 125615.7489 85802.3209 109162.9322 60711.6963 76181.4908 81319.5239 66337.5179 346914.924 117310.04 148175.959 29418.6958 65667.9609 90467.8779 67813.3177 87118.5087 259345403 tktA Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 47260.6861 31150.5466 27043.804 21199.6258 15130.2768 12213.3556 16087.3986 13399.4662 43176.6598 23638.7351 23820.357 475054.483 25930.5214 31934.2044 25061.1471 19639.7485 19639.7485 18714.9632 44055.6316 16795.6254 36898.4302 38287.4932 37377.5827 23110.0037 74891.3481 53576.958 38279.4917 262094.9405 47798.1359 33933.9895 20357.5321 30410.3745 49329.9406 15818.0523 26761.5349 112463953 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10860.1603 22152.5215 7250.6181 5234.1585 6869.3933 11044.4931 11044.4931 3697.6612 14602.8315 7467.1243 4301.8315 61779.4466 4482.2744 2437.4693 12415.9111 67268.3269 6666.727 3667.3312 4252.9627 11482.6258 3381.0663 77378743 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4294.7303 63354.3706 2885.9729 2885.9729 3404.8461 5127.8953 11813.8527 3790.879 4228.3401 2732.3201 4236.1313 3389.2388 239519185 ara Carbon Cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 9811.0383 103165.8319 9955.7404 2825.3728 2825.3728 2749.6198 6390.4821 11141.4227 2901.1745 2900.2797 9477.5069 5796.7939 6165.4849 3987.8993 10265.1228 226717907 amyA Carbon Cycling Carbon degradation Starch Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 147535.8431 18910.4414 60942.8004 71847.1322 53179.5623 11769.4693 62877.3064 99087.6124 54434.619 76815.6797 92285.95 80011.5731 4400476.6063 102170.9769 137341.3299 116701.965 69475.0489 69475.0489 73791.6649 136455.1405 111122.4218 81595.5519 453914.7097 83355.6813 119360.3293 47667.6032 107313.8027 113056.4993 188175.3961 93666.8578 96592.6902 61478.492 108907.5772 81340.7426 48925.2888 134621.233 208605292 hao Nitrogen Nitrification NA Candidatus Brocadia sp. enrichment culture clone HZO4 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Brocadia; 12312.1984 11206.7263 11040.9254 14301.4689 13696.721 8277.4087 5417.3272 6108.8116 9461.0603 20674.9688 6887.9124 221939.6051 12142.9506 23760.9704 9419.7077 8745.9147 8745.9147 14175.758 15319.3033 9582.8611 7201.9917 15320.3592 12116.4635 9145.4546 8600.185 14928.9402 5378.815 43412.0971 9807.1012 13790.1318 5615.2402 7903.9457 13564.79 7724.355 16480.6971 239800287 exaa(moxf) Organic Remediation Chlorinated solvents NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 12843.0137 10424.1227 8819.7005 18805.8129 20676.1545 6751.7765 4487.1218 6570.2796 24754.2302 12103.1365 365613.8695 13366.8779 44046.0077 14081.5888 33558.004 33558.004 8106.9893 157400.4946 11604.1394 8680.0607 59585.2188 11425.9251 10168.5159 8053.4567 25633.9568 71015.1345 41048.2398 16428.7991 17298.8003 7446.3356 12068.7493 19631.4182 45001.0482 23038.984 164455722 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6825.0562 6911.6504 67597.0908 22202.6647 4883.5479 19503.7232 4850.6422 84949.4548 50179.2609 9883.3102 9428.9903 6010.0991 6102.7129 5137.8743 16211.5332 7581.6488 11757.8544 2737.7694 5603.5758 4664.5746 2583.5289 9466.9059 389661918 ppx Phosphorus Polyphosphate degradation NA Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 6982.6693 3772.7549 6079.2018 7138.491 4401.1725 15429.868 10263.1365 10532.1626 143389.8994 9410.5912 27629.4202 14430.0657 16535.8371 16535.8371 6197.4008 17263.715 8816.6358 5356.2982 11495.0242 10183.8526 6081.0217 6087.7294 11948.7104 4248.2509 16889.5318 12921.5762 17701.5944 5721.3225 10456.6342 9039.8801 13169.6985 12637.8835 46015 nifh Nitrogen Nitrogen fixation NA Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 73681.2785 31846.9573 134007.6277 27746.7945 114224.6199 11153.2037 41005.449 42852.099 37442.1489 60627.7993 160554.7992 56446.1874 809929.6484 60802.9869 32458.6022 48514.37 33159.1623 33159.1623 27699.5727 77716.9967 42691.5048 136798.2754 58440.7371 45307.2744 37100.5422 33105.9412 46061.8737 116200.587 158251.4928 80914.9588 71087.3532 33251.9957 198904.3846 36819.3295 40790.4069 60968.9507 219946052 dehh109 Organic Remediation Chlorinated solvents NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 70983.8661 13907.3463 55031.1038 38785.9535 54503.1851 41570.4216 212245.3611 241200.1465 57317.1428 64549.6677 50046.6923 40854.6208 4298290.9473 75707.33 80935.3572 66484.2045 61274.6174 61274.6174 26753.5138 107476.0622 56230.7971 185960.5775 86255.3523 72856.6667 63000.0156 36775.7375 53650.6036 172507.4963 199209.0173 67227.2788 96911.033 86292.4867 50403.8313 85641.9742 372952.2588 61285.3177 383753268 amyA Carbon Cycling Carbon degradation Starch Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 12737.1337 7586.6426 15756.2231 11307.4631 7475.2133 8144 4486.6831 9174.8853 7840.4102 6541.9483 323962.8284 14527.4189 9950.8254 5863.9354 4045.3262 4045.3262 8165.3062 17863.6589 15875.964 16784.9648 18139.1832 15320.2438 5409.3211 6944.1656 17142.7259 7223.0854 33856.9582 8816.5646 13640.5398 6324.8462 7997.3958 11712.7728 7081.0762 19476.7935 219563104 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7498.3494 14547.5032 3943.2332 2711.7614 3218.5893 3739.1719 8185.0993 4652.3587 121446.4934 5797.4535 21286.3689 17412.3283 3077.2575 3077.2575 4333.9146 8574.2347 7516.9179 5860.4283 6382.1949 11512.9404 58136.6537 6708.7742 8254.6573 3228.2092 138438.4882 9461.2242 9440.7147 6379.4874 6381.3016 6707.6859 3998.3241 33997.3644 258619063 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16244.8457 8008.7417 14351.1839 7179.2825 6162.1063 7977.9629 28983.7635 212034.1179 7672.1935 6655.5591 12483.2064 5463.7519 5463.7519 2952.4669 4235.8246 5754.7547 5452.0777 4950.7918 2902.6258 3271.6091 7925.3323 3275.4596 12173.2127 6626.5484 9501.1941 3673.5561 3332.8697 3194.6229 4822.0394 10493.0079 88177182 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8723.9963 4213.4302 148834499 dmsa Organic Remediation Others NA Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 5438.155 20318.2757 49270.4237 2105.4125 17447.8092 2841.1849 5088.8607 18427.047 9869.4675 5910.1301 17415.9893 17415.9893 2815.0905 9183.279 12954.2121 6902.509 6988.867 12752.797 4507.3654 13231.0011 21003.5933 13018.5709 7651.7805 4641.5256 5725.2195 5217.7055 35213913 FBPase Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 60243.5765 219734.5817 192222.4719 59940.058 123818.8535 42860.0998 191327.2448 59905.8357 49132.1273 54395.601 77028.9975 60548.8093 3262125.2119 344010.4757 145829.9469 115631.0692 92816.4263 92816.4263 45359.0741 74627.6052 49438.1754 90909.1825 44546.9796 52447.6421 29528.9365 57145.0407 96215.5381 30356.5242 101036.4807 62138.8305 159871.2432 32809.5156 63354.4962 119979.1419 43579.0139 78450.2607 108466964 amyA Carbon Cycling Carbon degradation Starch Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 4805.7328 6811.5237 170367.035 6290.5556 6793.0322 3799.4088 5630.7237 3784.8039 2682.6385 5067.4278 315249676 pme Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 22034.6908 28712.6808 10885.0374 19858.9218 5233.1976 18650.8909 15083.1918 16442.2153 16802.5589 27088.8546 11373.4371 382058.175 23975.5343 16312.9167 14077.8749 10645.6887 10645.6887 13171.6244 28376.269 28217.4316 20673.6045 22792.5058 31736.9633 14724.4251 14046.8111 24993.9299 16027.3679 58962.1414 21589.2042 25036.2822 11567.4196 34392.5843 19460.0826 11299.5126 38018.2481 388530934 xylj Organic Remediation Aromatics BTEX and related aromatics Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 19363.6683 15328.5253 14622.773 87200.0479 17848.4037 8645.7143 5813.9256 116116.3446 4593.2645 5569.1109 20994.4571 20994.4571 6876.0094 12335.2131 151074.1646 10570.6171 5162.9511 5952.653 3676.8811 6273.8795 4113.6869 14856.234 20672.8285 9844.0735 23478.1941 6911.3751 7342.2619 3781.3647 4732.3241 87288805 arsc Metal Homeostasis Arsenic Detoxification Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 12964.8588 5972.6564 12190.6964 17810.8798 6183.1472 9267.0528 8689.9446 5198.4182 16278.9523 17360.0558 8602.3016 538865.2558 20562.3792 20909.5719 15153.9015 7880.2188 7880.2188 15515.2793 45574.9766 26730.3519 73383.0074 17470.4307 27120.8261 6278.161 11135.6906 24205.8263 8832.9083 48130.3739 20232.4856 26294.5362 22739.9588 14100.2519 13669.532 6789.9904 19039.2061 93354301 FBPase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 7024.7102 6082.8241 4647.5038 3336.4487 11083.6991 10002.2469 6720.3085 8024.073 156120.2975 10081.9478 17957.1101 6274.3841 5448.2405 5448.2405 5926.6374 24250.4068 11769.2983 12288.4951 15699.6088 9089.7762 4910.3023 5069.7766 11997.9991 4933.4111 21664.0911 5528.4889 11471.0368 4914.7509 10826.1588 8508.5264 4221.312 8814.4286 322396315 PRK Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 709169.1325 8289.8919 24695.7511 31419.5294 6448.4575 30935.3852 44650.2716 10657.9808 15919.0879 27362.2686 388108.8472 438651.3429 43022.2794 42387.4649 133071.2284 27502.4797 27502.4797 11943.254 116034.6034 18305.0072 21939.7917 24251.2494 21879.4845 29011.1408 13291.1415 46718.5445 19408.4126 39733.4987 19637.9297 76012.2509 11712.6635 28076.3045 24771.0437 20431.0341 31041.4125 91697326 metc Metal Homeostasis Mercury Detoxification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 67451.786 176734.6116 25003.8558 5726.5743 4110.6307 28717.139 11465.0564 45322.9365 14203.3201 29968.185 137101.1107 23038.3939 16411.4254 18576.4167 14262.4323 14262.4323 11681.1683 45740.2304 13723.9765 27802.9477 26068.3474 12321.5487 9212.8216 39136.1594 29467.5314 16135.2626 109771.2578 16545.7622 37683.508 6000.2577 14608.3194 22139.7912 11967.4302 41346.5355 313105082 dsrB Sulfur sulfite reduction NA uncultured prokaryote 7797.5941 6462.6819 8581.6961 2848.581 5399.7254 6562.8484 3514.4155 184240.4422 7102.1832 6535.1658 8001.2971 4244.5138 4244.5138 3398.5283 7982.0019 6094.8148 5836.521 4890.4241 3605.3485 3235.0138 9974.4196 3036.0267 11313.736 8629.1935 8175.9197 2548.0534 5159.0335 5457.2878 3875.9238 12077.5906 21624254 one_ring_23diox Organic Remediation Aromatics Other aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 36112.4789 24733.3458 69584.92745 16647.08765 300281.27115 20047.346 25357.5582 32431.3146 8312.4252 10676.19735 66590.2852 72276.28945 311869.5861 49674.2791 18878.5808 167126.0461 23863.73425 23863.73425 16487.8132 34371.2768 30824.95345 7959.6313 19299.66495 13581.97205 11239.3925 26050.72545 46243.1628 8197.6058 53944.8853 51874.95905 32381.71465 9659.1162 15674.59535 33422.93105 14598.1613 11776.47765 340528433 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 738044.1607 168028.1553 1549891.132 287893.4294 226982.3673 86483.9775 300839.8067 350152.0551 190963.992 288376.8874 310276.4924 312157.0365 10829009.0877 316980.0561 600810.4646 546695.5417 290391.1199 290391.1199 297787.274 319408.2796 311125.891 225410.8638 348040.3151 476944.252 208648.1903 260648.8233 333351.1461 233024.582 483567.1269 427624.7504 290094.4283 154075.8169 308231.325 191835.8309 165740.6773 639047.6302 154246624 poba Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 87786.8948 22934.5099 503678.6069 57393.986 176573.1205 68396.7413 88044.68 69109.3216 65687.9117 39802.2577 49148.4137 51607.025 1363958.8944 82644.7731 191615.264 97973.8959 63729.8258 63729.8258 32437.7449 91326.5303 44314.718 83550.0446 58630.4624 111233.5247 51616.1947 44472.0009 71049.7216 38697.0296 108141.2065 71885.6676 73083.3321 35632.212 56541.3347 85647.0467 30814.1383 77788.9587 160361761 tktA Carbon Cycling Carbon fixation Calvin cycle Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 5486.7483 10188.6143 15522.5653 71405.0082 17845.0356 4639.3711 7036.9331 2506.5017 11488.9159 11980.8823 9400.2459 207735.5141 11919.7905 10255.995 16142.9332 12975.424 12975.424 6005.2314 20270.3168 16349.1357 7331.1698 8934.4358 2052759.7257 4043.6742 8063.9971 24294.0489 5446.2732 26639.3388 25949.7104 20805.0978 7614.5317 8306.0673 4992.1496 5357.4317 7834.7671 237685247 urec Nitrogen Ammonification NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 8645.2478 15114.192 48817.5437 56244.566 3611.7576 14894.0494 4968.1384 7434.4524 5817.2643 5742.9031 1511542.0738 8652.9447 37009.0433 8151.1011 8309.6555 8309.6555 18232.4229 13087.1697 5479.5526 7708.607 15165.0385 4664.6775 6893.5829 27481.5688 16547.9966 22020.2009 13995.5217 11941.8401 6831.6133 6358.2638 7971.2048 8865.7006 211905493 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6795.29 23030.1811 3809.2084 7326.5724 4709.3803 4012.6225 3337.0789 127702.3426 4425.2916 12765.8669 2621.695 2621.695 3179.9744 8292.4101 6409.3587 2741.056 7060.1721 3147.0925 11650.5526 10992.871 7053.6912 4132.7221 4197.5466 4637.6033 2553.4368 6168.35 70985570 inulinase Carbon Cycling Carbon degradation Inulin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 10115.3445 291492.9821 12250.9564 7702.4129 7118.4738 27401.7269 3689.4279 11714.6 13514.6311 10078.7407 530121.4725 18513.0403 10023.7235 16451.4547 6141.6325 6141.6325 8934.2719 18466.7831 8291.595 12293.4124 16184.2532 33399.7868 10433.3681 9096.029 11576.3338 9500.7101 24046.0433 5418.0161 35366.4493 5578.1059 12425.3326 31683.0752 11021.3318 11355.9643 212538619 p450aro Organic Remediation Aromatics polycyclic aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 53281.5017 18535.8787 142599.7815 18557.8771 14867.6281 31176.2397 113986.5682 34612.6975 48290.214 22430.1851 28092.3173 944417.598 39331.4868 38134.0721 52739.0296 34189.8487 34189.8487 27392.1284 51087.2629 26598.3596 49911.4511 80582.2458 31903.8027 49664.3029 17677.6862 57290.8426 94343.9647 79312.8244 88823.3648 41288.9171 28286.963 22279.9576 38439.4933 41256.2939 155925.9278 197119647 terc Metal Homeostasis Tellurium Detoxification Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 5810.7813 10727.6927 13858.8038 4393.4078 2662.6043 17616.0317 5413.0195 25206.4625 83609.0925 12445.1372 6390.0848 3292.5813 3292.5813 2923.4237 8626.6776 12489.7865 5154.8354 7291.503 3636.2931 5334.3108 15909.5362 4384.2555 144993.0028 4040.6619 6886.6723 2760.885 2949.13 5567.8137 2315.3012 6316.4484 120603179 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 8807.1941 16826.0097 16058.6997 22130.8922 5343.4858 3377.8924 3172.0131 16384.8334 17137.316 102077.2207 7984.5363 6433.9888 3778.7985 12659.0293 12659.0293 6070.0403 24196.3375 5306.5684 8392.8832 15434.4758 25649.6324 12636.3861 6637.4347 8213.385 6535.4876 24284.1428 6961.6854 9482.9401 8180.8452 5968.7683 10686.9488 3358.4577 5207.6576 3261674 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium tuberculosis H37Rv superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 6583.6861 9713.4702 8806.3451 34710.7189 3110.5997 4152.2372 9713.4684 100479.6161 6195.4511 7087.4445 4834.2724 3080.1975 3080.1975 2577.8237 8633.5332 6280.7125 4984.2628 7545.6379 5218.5411 9486.0083 8517.7537 22752.4027 10169.4453 6078.1183 11617.9577 7714.7487 2896.351 24189.3537 9098.1883 152146060 PRK Carbon Cycling Carbon fixation Calvin cycle Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4855.3363 5036.4134 9028.865 5031.3655 4193.5597 3763.3512 6433.1192 4448.7737 113537.8496 32975.4709 6996.0245 3533.5277 2331.05 2331.05 4322.824 8773.8231 7123.888 9533.8818 7162.3084 7627.6803 4253.0465 2732.4479 8031.1103 3756.0771 12108.8803 7312.9458 7662.226 3095.0379 3610.4954 4651.5661 3173.1013 10436.6796 294884171 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroC99_4W superkingdom:Bacteria; 6738.1673 19897.6471 22506.1498 13582.8953 14874.7593 21257.28 7976.0045 8978.5564 11154.7832 15592.853 19857.311 141978.8901 35139.2575 12659.0164 43088.7168 17486.3457 17486.3457 5854.0797 14128.285 6362.0474 7783.8872 5675.5215 5436.7588 15584.6711 19177.7117 8149.1363 8136.9203 21605.4754 10879.8868 12148.7145 3086.4555 8159.5182 9259.839 3585.6956 21778.4164 365896455 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7358.9244 5016.177 2013.9174 5734.9714 3236.4153 3297.1876 3440.0227 4500.3593 4500.3593 5189.9197 2861.2265 7869.5782 3011.7053 3408.7875 6734.1839 2312.929 11344614 norb Nitrogen Denitrification NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15999.2262 8189.1172 10034.6583 2300.847 10287.6184 3988.3521 4854.3395 12766.4634 11471.3536 122962.3952 17160.0265 8362.8396 12529.4422 20085.0069 20085.0069 4429.4225 82287.1082 22976.116 9261.4441 6790.6559 5900.4176 4326.4717 9095.7071 12079.9448 5490.1682 13097.7225 6873.5875 10202.3515 4920.75 6291.656 13337.2492 4379.7033 12516.7115 336398862 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 24590.2958 17122.0127 18337.4357 26384.3522 18185.5583 6301.5831 26361.9517 23921.3658 14730.1941 24291.3946 23531.7296 12442.9826 696601.0912 32204.6049 32667.2964 24152.3891 15051.9942 15051.9942 17782.5123 43066.9327 25567.556 28932.1404 35311.8414 56657.5651 12899.3093 10752.8243 23469.2852 13394.242 46401.8415 5808.3979 26201.3908 12119.2029 19409.6323 17725.5692 12524.7255 47820.7437 216773 dehh Organic Remediation Chlorinated solvents NA Moraxella sp. B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella; 7189.6553 6919.9914 8502.7994 4200.1486 4634.3923 14830.0806 8287.3552 7649.0437 4834.8533 4199.9292 3203.3595 3203.3595 4095.0698 11569.9243 6918.5661 9537.6708 14884.6517 6077.7795 2302.0079 3173.628 7804.6091 2860.5663 9146.4632 7068.2524 7396.0823 4009.1811 6596.6672 4527.4903 4694.5519 6439.7636 358004717 xyla Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5325.7908 4464.3732 2831.7944 4889.6599 2740.3158 5544.0439 3608.6191 4670.6868 13528.1873 3720.2189 10074.3873 8431.7619 4876.1565 1960.7009 3686.8071 3269.2534 2178.1451 332653549 dsra Sulfur sulfite reduction NA Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 6074.5852 18045.2733 33551.9577 22409.1271 10493.2293 3748.3925 6745.676 12197.155 7797.6606 372212.9094 19971.3352 14205.0741 12290.1592 8782.6938 8782.6938 4923.7606 16849.4468 12369.5762 4642.926 12309.0819 8829.6053 3406.4682 10158.3041 14684.3196 9655.9715 42010.212 25701.2573 18826.4215 50877.2856 11959.3942 15282.2926 5494.5701 7994.6829 357079593 camdcab Carbon Cycling Carbon degradation Camphor Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 614740.5227 5617.1133 5635.6836 12617.6397 4817.3816 2586.3983 3446.4558 3632.4934 5649.6417 2817.0134 128515.8493 5491.0182 9616.1217 5555.5364 5555.5364 4070.9811 10794.2355 6695.7734 6329.5642 9057.479 5103.6892 10628.22 4120.4457 10410.5311 2509.6842 18462.2288 11551.7695 10216.426 6090.0471 7435.2764 6878.0278 3719.3769 8994.8689 359398879 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 13790.7424 8965.5117 8474.1844 17588.8303 30136.5095 6300.6925 18634.0328 14832.3144 335949.1849 12227.5658 14733.3221 110650.1103 41443.8016 41443.8016 3370.7008 48117.4927 4388.75 11608.3607 5155.6845 6641.1502 7525.5091 14094.6278 3550.5787 15721.8769 5403.8122 13025.998 4874.4916 6357.4739 8206.8847 3756.0661 7340.0357 295896014 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 5217.3128 5728.7353 8517.2303 20339.1724 8713.3283 12103.3697 3678.0267 3894.6807 5787.8884 20128.4684 6047.4632 4031.0218 4031.0218 5776.6322 9534.7617 27345.2795 10397.6968 4527.6354 4879.8177 9854.7238 2983.4149 12730.3348 15494.7609 5934.3834 3560.3921 6748.4954 5126.8821 4846.358 294345172 chitinase Carbon Cycling Carbon degradation Chitin Salinibacter ruber M8 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 5543.0623 5004.1905 3924.1984 4656.7076 109453742 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7150.7796 4964.3688 4213.3001 7320.581 11194.6049 7605.3019 10128.0514 22533.6003 7768.7678 144999.31 5763.624 8943.8215 12612.5215 8733.1873 8733.1873 4419.7715 8348.3051 4943.312 10484.0364 6955.9192 6695.2586 5721.9603 7614.068 10464.059 10230.273 15999.0755 14046.9523 12145.1383 9229.8537 5066.1662 12470.4888 4384.5936 19090.4852 359783040 FBPase Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 8455.6518 21542.9738 22645.9195 6613.7945 4329.8125 7232.1207 4212.1304 10522.4644 28292.5035 10361.3302 270141.2696 12334.5165 10111.5176 37495.5507 8618.4256 8618.4256 6880.2076 18462.5289 10921.2603 9607.9635 10542.1804 12560.6319 4119.7442 13035.2357 16019.4692 6517.9944 23635.9301 11258.9203 16679.0133 6303.8803 7907.0092 9052.9462 10177.8597 22732.9661 110006524 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 9434.8444 10232.4958 5454.4084 72144.749 24228.0326 14672.8244 12086.3467 7783.8994 5726.7011 18275.057 12079.0241 675639.2427 13240.5759 12269.3536 20310.6398 10577.038 10577.038 4905.2121 10721.5734 8984.6387 7944.4167 9102.9457 13075.2804 8106.7513 6894.6107 9443.6476 6307.7807 13483.5145 11969.8035 21525.9878 10631.4727 8304.5727 12637.3752 5427.7718 23275.0254 119958381 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 13480.8852 15191.9093 3747.9591 9338.7381 2181.1676 2255.9091 3102.4065 5076.6603 3247.3152 119506.2266 6297.5601 3809.6395 6594.958 3081.2449 3081.2449 2933.1574 6200.8433 5549.6131 4968.5803 25377.6328 4671.6905 2256.5639 3945.3619 2257.0119 11360.9361 5403.9337 15945.098 1727.0302 3540.2033 4013.4654 4738.9584 6285.8781 409393882 nosz Nitrogen Denitrification NA Pseudomonas sp. Chol1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 77793.3303 14333.0459 192885.5367 27766.1054 48323.6173 16022.7174 59784.9311 62433.0483 57307.345 72112.8221 83741.3668 68061.4676 623996.2845 97911.93 66431.2843 76849.3325 49644.9634 49644.9634 97848.0761 79387.6907 78607.6615 106842.2443 66942.437 151903.6802 58816.6636 113291.0591 52842.9694 118827.1012 78545.8086 314538.9073 68456.3662 59182.0313 158645.2981 55867.1402 32910.5518 179353.9601 220935937 PRI Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 16227.4176 25464.3907 10667.5494 8736.9475 14874.0679 20291.1183 36705.6672 11507.5994 9478.1586 14325.7177 308179.5926 54246.0976 49501.7858 79036.615 9165.863 9165.863 111517.0969 25281.716 24283.4116 17715.6965 26317.7102 31517.3295 11979.8035 12948.8412 21979.8627 10300.8741 82829.3554 19887.7235 19558.1083 8305.107 153123.8315 15304.5868 10237.3059 24258.425 164456042 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 12994.2439 42184.3236 2802.152 7252.0617 6198.6206 8188.3025 8879.4956 252487.7184 8516.8464 6281.5702 6783.4849 4648.5111 4648.5111 8847.1279 29550.3074 11022.9618 10204.5551 30551.6555 12980.1625 8753.6179 10387.1258 14014.9054 8729.6525 29837.3601 12108.3074 16518.2632 6443.4544 10661.93 11887.9992 5035.7084 8434.1936 343965765 endoglucanase Carbon Cycling Carbon degradation Cellulose Caldicellulosiruptor lactoaceticus 6A superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor lactoaceticus; 3993.104 93687.0138 8050.4577 2981.2219 3558.9711 5122.9261 4457.9258 84337.0606 13164.19 7226.0382 6008.7561 7307.4773 7307.4773 8902.6529 7387.3688 6712.8517 2545.4004 24480.5919 15488.0795 9378.993 11910.4871 8596.6955 8710.9386 3927.231 5654.5019 10973.0911 4278.9956 270210928 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4311.822 62806.0197 68928.6343 2488.9837 4466.2507 66717.2758 43845.2352 4106.5604 6048994 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 12856.4275 18072.1849 9734.104 23058.6552 26042.5164 12499.3408 11073.1133 20432.6266 11094.353 80982.389 19993.8461 285994.2191 11358.5343 16363.7467 28070.4899 11720.545 11720.545 9320.9177 21568.234 19610.3023 10333.1173 13601.0496 14864.8081 6655.4994 13204.3082 16480.7111 9130.9974 29933.1 28400.2266 35664.0029 8172.9083 12313.6623 10773.1908 16477.1627 10500.6652 334882137 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 228122.0634 4336.731 17403.489 9406.2239 7071.582 29323.3113 9040.5326 5381.4839 5748.621 5306.5749 69904.0521 16424.4027 16110.6835 9164.1464 9490.2482 9490.2482 3591.6707 21293.1739 5906.2974 23519.8487 14830.5769 8548.3894 7531.2801 65293.9733 10014.5873 32672.7691 32930.6888 15107.7454 9742.5913 9638.6332 17513.8461 20824.9014 7570.39 16535.0253 142853341 amyA Carbon Cycling Carbon degradation Starch Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 18260.7008 29866.3226 27843.372 11491.3589 6349.5499 18800.9849 5769.4687 12368.5444 10935.4312 11124.2388 15134.671 136198.3475 31245.4072 43877.759 11595.4141 12366.0102 12366.0102 13160.8423 29425.453 14497.7687 27887.0797 22197.1795 20976.3006 7762.4352 19463.3118 17917.8014 29911.2937 33917.9555 15817.3401 23666.1351 7156.3292 13107.4713 12222.7156 102984.5319 175272.1095 350540924 phytase Phosphorus Phytic acid hydrolysis NA Serratia sp. TN49 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 9739.2311 39238.4572 3803.9426 4616.9571 3882.4733 6489.3905 18773.1827 78873.3424 5289.1369 7576.5688 15548.0964 15548.0964 5787.4645 16190.8493 8691.923 12935.0288 13722.9464 5782.8023 4181.3283 4319.9085 11645.578 9036.3593 19390.282 11498.1252 13025.9507 12036.7846 8366.5744 10480.1913 6396.6173 7330.0726 119391547 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46226.5322 9077.5074 34475.6643 8186.934 22131.3341 30320.551 36626.7679 5282.1972 10179.5867 163185.5245 5634.6914 34312.4553 5385.9287 28544.5688 28544.5688 13561.0289 62466.0625 4715.8987 5768.9914 12100.5066 13195.5208 6980.9308 10184.0137 8229.3566 7840.6655 13477.2605 12630.8362 44865.1973 6306.4947 11625.1206 10677.3528 12361.7472 7222.3016 119817918 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 69029.1746 36540.2098 59483.8652 22547.4901 45174.8781 15129.8163 31473.8751 48292.7774 41733.9862 38829.0389 104119.0644 104289.3705 963521.0579 75997.3792 86522.831 63289.9583 40214.7742 40214.7742 41038.4566 69740.4219 35898.4822 74567.8289 90987.0282 57057.0358 48599.4096 40528.6048 65351.6408 34162.336 104991.1758 54493.9771 63925.0579 24172.7191 42176.2651 40984.1135 56858.2497 139896.6869 374853336 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured candidate division OP1 bacterium superkingdom:Bacteria; 13776.1827 7998.6535 3965.7349 6203.3016 6352.9955 11255.2322 8616.198 6215.1579 235373.5086 10423.1325 4779.655 6207.013 5003.41 5003.41 12284.9284 22974.2998 11994.1996 9162.8159 9341.529 380737.1395 99918.8891 6755.0231 30687.4311 122407.7535 15166.4038 14208.008 16740.9864 3960.7693 11748.0537 9996.0021 6259.4378 144218.1034 348171080 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 4849.5358 2692.0589 2375.6891 7723.8547 15242.9611 2708.9882 3886.6185 3077.8964 3077.8964 2869.5066 13030.6105 4591.2863 4985.9423 7365.62 11095.9238 5063.6374 4312.4074 16182.8398 6411.5741 8582.9291 3208.7457 5015.3008 5346.5695 21960.8219 333392830 endoglucanase Carbon Cycling Carbon degradation Cellulose Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 23733.8187 7178.0686 14788.9361 19939.1395 11140.4534 11361.9719 5401.2634 14949.1571 15748.4389 9574.1831 204283.7088 14206.4403 14610.0201 8320.9301 8158.3554 8158.3554 16427.5777 41411.464 13017.9975 15699.6646 19054.9082 43323.63 9230.7666 8344.2693 20633.9168 11016.3295 42597.8675 9386.4974 19484.8949 8919.6169 10950.3797 12141.7918 11466.3268 17504.8289 84503535 ppx Phosphorus Polyphosphate degradation NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 13437.0043 6776.898 14637.57 11197.1027 5782.5046 15660.0223 5285.2501 10454.4317 13636.927 7098.8961 230424.5729 12246.5863 12528.5731 11492.0822 15649.4378 15649.4378 18200.4656 13293.5982 8683.1105 14760.6745 20514.0138 33439.4962 8059.3642 7582.3917 18757.6466 8996.8934 17605.6364 18431.5324 21370.2643 18909.0632 7284.3965 12226.058 19629.0495 14838.6454 116699055 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 6739.7051 9939.1187 4956.3027 11610.5405 5417.5139 5345.9986 3451.2201 88100.2711 5606.8141 5989.1007 7492.7989 2276.9615 2276.9615 3505.6851 7836.6479 5620.6366 4636.464 11294.5382 5621.0962 4504.1791 4465.5518 6593.5263 7838.3906 12281.642 6883.0088 12237.0706 4137.8269 8933.423 5818 2797.7436 4816.9957 18313381 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 6791.8663 2266.5948 4198.3702 4597.7524 12823.5905 107793.4867 5486.748 8518.5399 2938.9856 8495.3542 5211.7712 5816.3189 5367.7903 3072.1599 9134.2429 10089.0653 6461.2486 15118.9076 3020.191 4992.3566 4666.6946 2843.717 222354274 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 13596.734 13541.0129 6904.7026 8353.3836 6898.409 4544.752 5129.3942 11392.5615 15051.2677 10351.4911 149663.1362 13221.2327 11732.0121 5947.4462 8022.478 8022.478 10285.8209 26193.4633 9572.5715 192641.9331 18128.4594 21260.3268 5890.8491 11271.1186 13478.8813 6626.0412 19771.2987 9792.2295 18955.5334 5078.8797 17732.209 14656.1234 7492.8355 18058.7389 317464593 cysJ Sulfur Reduction NA Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 69919.4935 14277.0761 5085.7036 18357.3188 4937.1979 14416.4055 33114.8629 22579.4204 135460.6929 29510.6963 53535.3947 2776763.1124 42180.7811 62586.0791 141873.7329 48466.5744 48466.5744 17806.2221 59950.4946 30727.3088 44528.6099 68074.1508 28815.5636 39909.421 41116.0276 32167.9264 29513.8417 92683.9179 69566.1698 44473.9861 11567.0255 27784.9402 44417.3751 26538.8328 61759.9597 119391625 narg Nitrogen Denitrification NA Microbacterium sp. D1-15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 45610.1171 25521.9892 38947.7077 29751.8356 95938.3859 32375.77 21943.3864 29982.8913 50198.3985 39720.7511 38033.115 42482.1582 758639.1053 45859.4175 39567.2289 138615.4861 46501.2628 46501.2628 26708.004 68609.8856 33441.0058 31408.2043 37617.3794 30772.5274 23958.6585 32660.926 49027.5444 40365.4808 96215.0751 53774.6563 56985.0428 18168.5271 23616.4867 43018.6117 23081.2026 115148.9381 120323821 arylest Organic Remediation Aromatics Other aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 15069.0315 30932.1509 10282.0142 26681.9779 10407.9488 61308.6472 12739.5677 33187.9326 16018.3891 11247.46 326699.4234 17051.3868 18192.5618 13205.9822 10963.6072 10963.6072 12799.1576 42742.5829 13709.9779 20516.4497 43965.4565 156667.1717 20063.2285 10762.8447 21694.3931 18783.1126 57843.4288 24321.6826 25968.6016 8593.0276 18719.5344 18531.2469 10867.4918 17130.3865 78356157 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio desulfuricans subsp. desulfuricans str. G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 16307.6418 10283.3925 17602.2621 6463.389 11293.9665 5339.7465 125270.4301 9795.9846 35265.6587 173492.4584 11169.0956 17761.5432 31924.576 15769.9489 15769.9489 32931.9421 18297.614 11398.8867 11852.3519 13186.3356 11593.7135 8607.1896 19454.5199 21052.046 16678.7116 33796.7336 15082.5127 17578.0123 6026.0433 8953.8146 11780.487 30535.7278 17064.5782 299740557 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8771.1997 13315.3251 7789.317 14701.724 2892.334 10559.7097 3631.0533 2445.5695 58871.5243 10576.5251 4994.4234 3397.7682 3397.7682 2722.2467 7620.0591 4033.4659 2947.7026 10150.2641 3873.8543 11491.6087 11979.8489 6514.3318 4726.7321 3649.1506 7758.0492 11893.3013 222354086 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 221559.9843 194727.7004 26673.417 25892.8528 7845.8807 18573.8805 15981.4887 14369.207 63359.4284 20320.0812 14341.7142 553624.9685 51508.5311 23529.4378 12542.3343 8111.2359 8111.2359 18660.5846 31775.258 22064.5185 24452.5306 66561.4688 49656.4491 16093.5482 13684.4464 26563.9566 10616.6149 41975.4841 14185.6832 27973.0153 12159.3015 15597.316 17758.1004 16533.878 39379.5326 220909603 PRK Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8107.6823 6834.9942 11432.0225 12899.7914 6173.5273 6188.8733 12648.2142 5099.6667 10354.094 4275.6461 191068.7195 8812.05 9644.4716 7348.835 3866.2656 3866.2656 7889.3735 13639.0424 14313.651 12208.5135 12816.1983 16498.6618 5853.6711 5316.6142 11186.2596 4724.9183 27836.0737 10834.54 17431.2454 5647.0336 7513.1892 7319.8532 5453.0907 15126.9357 377821471 urec Nitrogen Ammonification NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4050.6111 6344.2231 4275.5729 3857.5862 4901.9125 4491.2888 2529.9553 2529.9553 2625.2911 6394.2329 43495.4152 10542.9379 3139.2398 10726.4145 2228.1947 4740.0006 2719.2563 40713179 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Actinoplanes teichomyceticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 44775.7429 15005.8391 30709.2526 38607.6818 15627.2956 22077.6977 22661.4603 30771.1937 14359.4062 79823.3946 19740.228 541525.3754 54241.2212 54241.0521 19348.8757 27571.9851 27571.9851 48590.0317 42848.717 18066.0748 33779.5463 35313.6358 115480.0136 20586.0769 21699.4253 33855.9232 33376.4439 53832.7678 15735.9943 28041.4685 16102.6306 26256.6741 90776.1192 25068.3709 30163.5045 297150837 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9930.3396 4511.8443 3502.0213 7454.9337 1927.3672 345428665 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus parainfluenzae T3T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 8446.6819 9290.1322 2517.1864 13961.4603 62674.4343 6863.0261 9833.2381 6158.5536 4168.05 12879.9164 5305.8118 9516.9795 7835.979 5079.4821 1958.3428 29714.6998 4762.5879 300728474 RgaE Carbon Cycling Carbon degradation Pectin Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 99721.416 45951.2966 62653.965 102585.1368 15789.893 11326.9499 27861.0257 11350.7432 91438.6878 39524.8081 46760.3088 7954874.8656 131856.4101 107684.9839 52627.7184 60827.5123 60827.5123 28184.7012 39617.0806 33169.9731 20773.7898 37721.35 39365.9046 18608.8589 36704.2709 45815.6248 47211.1602 98560.3326 31627.7066 43091.6486 204015.5094 26875.5398 50122.3968 21745.2645 48896.6036 302538125 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 16505.4192 7000.0245 7371.3374 21548.5729 5857.6853 4195.0479 4823.2489 3772.4764 9488.0339 13267.4066 6239.6538 254307.7377 9864.9409 8666.4651 12395.0361 6497.9937 6497.9937 22008.5227 17553.621 13171.1434 10347.6105 12363.8148 17168.7869 7539.8015 14892.7618 15959.78 5513.1514 22348.0799 20097.8297 18342.5091 8693.8136 11036.9735 8125.4489 5698.5803 13257.1893 374983150 chne Organic Remediation Other Hydrocarbons NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 78539.4446 13640.766 21354.5059 170945.7731 5254.9624 17358.171 28796.8398 15257.1193 26553.6331 23141.2089 16709.9174 320039.2378 23038.6332 18359.2837 15444.2084 12774.3002 12774.3002 13969.5028 26153.99 18169.1807 34860.372 53267.6113 46947.1199 12816.0586 14952.5904 26884.3602 18512.5309 41380.359 18027.3578 25009.632 13775.5067 19238.8086 18978.0262 20758.0721 20551.8281 187426692 chitinase Carbon Cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 37702.4903 7669.5908 38042.4703 16006.8696 3599.5722 29246.1102 17178.4726 112391.1361 9695.0145 5462.8796 274321.5285 13333.6785 14888.7963 54507.2255 11312.432 11312.432 4685.4149 36147.0758 13559.801 9413.8752 6426.8383 13990.7979 4955.4603 15738.3132 21584.7232 5477.0379 37356.6122 13313.3396 19894.5675 4857.211 8360.6862 29659.8075 6763.2116 9191.8625 16264857 nirb Nitrogen Assimilatory N reduction NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 17221.3201 20166.5238 5539.6733 11923.6497 3631.6409 4843.4046 17085.6088 10389.1758 13521.6848 7770.0681 247692.8934 12409.2787 41402.7146 95235.0178 7289.4774 7289.4774 6175.4205 18129.054 10954.4713 8674.4969 39539.3599 12337.8457 5041.5747 8569.2313 12573.9673 7908.5149 28070.7389 12642.2057 24450.8837 6267.1627 9951.8125 7200.9301 11077.4316 10586.1397 269960900 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 23551.612 11854.5999 13128.6904 32281.5813 36228.7599 8320.3282 611590.9744 35623.3475 20763.3958 37132.8039 185409.2577 25891.159 593812.1411 28558.4952 80256.145 24808.4024 20133.5683 20133.5683 34772.5411 107943.6398 46070.1602 788623.5512 224281.1843 28392.332 113513.4178 45893.0849 43686.1561 158580.6967 125161.3564 56018.6524 37162.3172 29446.2187 378072.1715 63685.0491 24244.4798 237262.1204 109452560 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 98776.3836 118161.4504 11893.0886 438894.3099 13598.2304 8980.4191 53814.774 2828.6414 28433.6945 20796.1143 10674.5252 351032.0513 19911.2559 31355.7216 30696.6879 66999.0904 66999.0904 55659.2384 34331.7437 29741.1139 62567.6473 12856.9676 13911.6124 79866.279 95581.1189 98354.5705 195663.6016 825153.399 94809.9227 52783.8798 36180.489 31080.4569 32493.5944 10309.4425 12234.4043 90954589 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22268.5786 9766.0028 15100.0985 5474.8432 8910.4022 9674.2167 6967.3993 19770.6891 18658.9732 9140.1132 566854.1393 35919.362 30809.114 8565.2888 9481.383 9481.383 11871.9075 24636.9357 13417.4857 20808.1292 32072.9512 46458.341 17908.2114 8777.0459 19066.129 12523.3462 33935.117 7755.6134 19669.1318 9766.0797 31726.7579 13782.8302 10285.4692 35873.9145 167628556 nrfa Nitrogen Dissimilatory N reduction NA Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 6958.9097 4956.7305 2933.7952 2128.0793 5254.7232 2494.3039 3603.3515 2038.1111 5048.6426 255920285 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 57643.0077 26684.1842 23794.8452 19241.4615 10955.3872 50345.1309 40939.1055 19615.9879 235067.5572 31576.366 37566.2028 680687.3582 43563.7384 59770.7744 22510.2284 27960.6767 27960.6767 16249.5078 53648.1006 21846.1946 85232.7188 44004.6442 23297.9449 47906.0551 15181.8309 46632.1231 33680.9955 64905.9961 14673.9729 37706.3683 16229.9099 46615.3585 23746.92 19869.3226 194271.5015 219859801 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 40585.1855 6159.6847 4602.7963 290866.5962 5464.8714 11965.4903 2556.5134 5846.3375 6978.6805 6328.1915 2302.0547 2302.0547 4531.1364 7962.2487 4023.9047 5952.3553 5955.8308 2831.1388 8000.6102 16882.5644 6470.235 7546.3026 2220.9781 3026.409 5080.504 2010.6628 170654723 cysI Sulfur Other NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 214031.7532 58901.025 31106.0795 103844.7381 25570.748 7188.5255 22268.2182 8057.793 56679.6092 36535.8437 34334.3213 552128.3834 34384.3903 84161.3059 41386.5282 73178.5509 73178.5509 30796.9394 38212.5776 30868.1117 36085.8332 266717.1892 93877.5424 49294.0741 47917.1882 62169.7748 41309.3587 71835.286 49855.7116 67181.0938 19790.9792 72742.6922 36453.2624 93350.4405 95863.36 126729027 tktA Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 81552.9418 12090.8572 217917.0876 77017.7259 66884.0906 52630.4729 58292.7698 62081.0054 52788.5937 52196.2522 151542.5861 46723.8448 1414428.0266 64888.2577 759609.2691 103342.1068 79017.0615 79017.0615 78427.6611 88405.2799 36528.2087 59210.029 86940.6856 103573.6074 41810.5217 33533.6653 50672.4066 80237.169 105932.113 45442.995 73749.1403 26761.1729 48717.2043 60752.94 41491.3053 73947.0771 254465391 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 93106.6106 137179.3012 218400.9414 316272.9999 276620.9616 107252.2124 40367.5008 135162.6804 98544.6482 59489.5261 83651.4468 82329.317 1677836.5289 34276.5479 107250.7585 89970.3691 85366.0503 85366.0503 53388.588 91587.9887 49775.2252 141684.5634 95775.0109 198450.1237 220875.9454 64798.3187 60926.9179 81798.1093 179092.8325 132557.2899 76318.7909 46317.5105 77466.2083 62950.5364 38438.0722 91382.0679 384527629 amyA Carbon Cycling Carbon degradation Starch Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 7969.3086 5885.3585 12943.1862 12395.5541 4009.3303 4456.8779 3942.9752 9252.0222 6822.2607 3131.6447 96421.0573 9422.1314 6652.3022 8792.172 3340.0563 3340.0563 5410.9621 11564.9751 9473.1481 7356.6256 10522.788 14393.2246 51471.4163 4700.7204 9521.9772 3733.1275 16788.954 4213.9773 10034.8182 3869.7054 4616.6732 8276.2906 4576.6212 10467.5476 286035 ppk Phosphorus Polyphosphate synthesis NA Klebsiella aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 17189.9169 9528.8511 13326.7595 6800.7572 5346.2728 4523.2825 9115.8555 6448.0692 53083.9977 5450.9362 3984.0553 6303.7171 4492.1691 4492.1691 3041.1095 8392.803 5970.6657 4142.0504 6324.3278 4798.1704 6325.8894 2948.8844 8370.2856 5499.2245 20297.5724 6068.1894 12567.9978 5368.3771 6723.7697 5679.1327 4631.5029 12726.5043 313665973 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. BCP1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 19523.5118 4882.4521 47891.4973 7456.0646 6093.8287 7789.4351 5983.7487 173969.0043 8532.6755 78971.7344 9484.3334 47043.0423 47043.0423 6497.6435 16337.7546 7981.6753 20253.0312 16805.9244 6532.9008 4575.015 5199.3255 43423.5573 9470.1062 38312.1745 12046.8814 9629.7382 3776.566 6309.3358 7928.9387 7516.5629 6910.0095 159140249 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 17874.9674 47369.5007 4625.1155 4659.5236 3441.3277 9624.3003 365392.497 5057.9639 4523.0247 4523.0247 15783.9856 4811.2395 44480.0244 4475.9819 3306.0576 3453.2995 32742.9893 14214.4751 4662.6296 6710.835 5357.0398 2898.3516 311216027 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9873.25 7352.2244 3394.4104 11736.108 16475.1488 4821.2518 5218.8664 269837119 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 140610.9384 12750.0676 134468.4679 72413.4143 259028.9921 122624.1811 79570.3947 109371.6977 105376.9693 127351.65 110529.5611 126047.4884 14396449.3796 103528.6189 111887.4123 254272.9767 182479.8752 182479.8752 48614.1663 203095.9968 79566.869 87112.177 105541.9439 46815.4526 59430.038 146479.1145 127075.7855 77254.2868 253586.025 84684.8791 197910.3277 65853.6298 109710.6032 209531.989 84124.1472 58413.5041 378597881 TIM Carbon Cycling Carbon fixation Calvin cycle Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 4729.9267 8911.7099 3629.2971 6524.2509 1902.7169 6405.7349 12203.8329 24682.2988 189827.7555 5722.1006 5636.2362 25166.9794 25743.7315 25743.7315 2887.5817 8000.2592 12038.6903 5141.9421 5148.7603 2286.6223 4049.406 6130.2168 2372.4529 22196.336 5253.7264 7073.6333 2350.0682 4391.2644 7188.4667 4729.1556 5276.7088 408372647 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax hongdengensis A-11-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 35675.78615 7855.63415 19857.4776 8318.03885 33084.04075 15158.69225 9413.4777 18955.7336 21630.5661 10688.91895 23267.92685 23267.92685 22810.0116 11014.41155 41702.13855 20647.87175 8269.10325 7464.3168 33247.2893 25390.0994 14213.06705 16956.44825 7957.08185 14666.569 11882.31285 10949.85915 16143.13135 91978281 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 22546.211 12022.1146 31271.3329 88449.1687 5340.9012 172043.6647 34718.7926 16079.4731 43651.498 40998.5977 318382.7063 15126.4409 29417.752 35187.1603 22377.3066 22377.3066 9902.2941 56078.2325 16822.4505 14863.5157 31805.8855 103261.9448 15089.7443 49697.2566 27267.2677 20952.3366 53270.6817 39084.7499 38460.797 15059.5715 25796.9892 34536.6871 28051.2052 16452.1788 109648488 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9286.7602 14217.3614 3138.4306 17379.0997 4844.492 14579.5983 5801.6443 14207.7235 5097.8685 3878.7497 3878.7497 5956.904 7369.6419 3297.557 7100.0945 8137.8545 4434.348 6079.8768 160896992 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 42606.9997 18071.1952 11922.9323 36651.5904 30632.0174 14132.0755 15826.2305 38739.3353 17774.6921 53662.758 27622.6261 35461.0002 390894.4699 31259.6367 38187.1261 30667.6416 21284.8196 21284.8196 134209.6167 44918.5035 48651.1221 753479.8043 46021.9636 24438.2795 31507.0609 22986.0434 25865.4353 24583.0594 79387.3074 29279.738 43334.4033 11908.5981 53315.4087 32557.5664 28855.0328 23999.3781 334106510 rgl Carbon Cycling Carbon degradation Pectin Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 17369.4145 4881.2195 23972.061 36057.2297 8865.9265 9931.9627 9536.6549 4452.5741 40771.3812 28120.4898 20175.106 175139.4266 10231.3644 29074.9149 17132.6076 35378.7418 35378.7418 10323.4091 28492.6749 144650.7721 5398.443 48448.5712 8091.2652 31648.3159 12912.8719 147953.2988 19728.0775 33630.9294 25095.669 40275.8322 13333.4975 30591.8218 20525.2035 8259.4764 10771.79 403661678 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 3951.4693 3049.0581 3720.7171 2052.1493 3474.823 4771.1642 98868.5313 6805.6359 5895.7864 8535.4311 5168.2647 5168.2647 4706.2884 9941.5543 6368.2042 9063.7569 5871.975 6684.8507 4171.4677 3137.3919 6610.8914 2833.2616 12390.5037 6323.2356 9535.1893 1920.1933 2866.2842 4665.2405 3037.5602 6992.1109 355541017 mer Metal Homeostasis Mercury Detoxification Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 20391.0546 37030.2716 19693.9714 201935.6352 32136.4822 43999.0829 16142.5405 9575.4243 19862.6078 22036.5666 26090.2002 392115.0441 25932.2168 27615.6407 33769.0204 8981.0557 8981.0557 11105.6751 34329.4075 18398.0153 17641.2014 19776.5295 21925.5946 11714.9765 11158.8203 62967.8468 19415.8456 53257.9197 26046.954 26536.3859 22835.3741 19233.5393 20783.865 14497.9196 23174.5593 146342649 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 181313.889 8595.6212 42380.3464 53772.3163 29119.5449 28936.975 15407.098 7864.9059 25098.9709 20403.0523 13260.7202 375175.8277 28730.0163 24290.4889 12787.9119 16792.0045 16792.0045 12542.2991 27378.6873 73829.7906 19842.7128 22624.7638 135540.168 9978.7054 14875.0789 23592.8912 14690.5294 39558.987 48828.3686 25896.1984 22061.9129 14700.3775 10479.3659 19841.5632 43009.9351 148252282 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6254.5685 11850.7236 7401.6442 5992.6815 5090.196 30714.4117 9564.1977 7448.9046 8562.2313 115538.3228 7514.8159 6975.0962 14570.8405 4313.9794 4313.9794 26742.8475 28705.0036 11672.4555 3357.9567 15093.4924 8094.1056 2478.5307 9820.7547 21312.9909 7948.0924 41962.0524 12705.1464 12642.2853 5195.8794 10019.8738 77537.8075 5648.5118 169242338 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 18404.8922 28754.1449 98408.4103 68222.2389 5992.428 15219.5732 2882.6279 11843.7128 19409.6014 14858.3651 387828.4986 25705.771 24247.5858 40163.9495 26268.8705 26268.8705 14247.5443 25055.8373 40556.0943 6535.6832 13254.4696 12553.0512 5037.4168 19435.063 35037.7239 13961.2296 33707.295 36915.9174 33959.8218 8181.1187 14550.7706 12737.7956 4962.9914 5577.8946 167358673 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4436.2582 7875.7893 12600.5951 18059.5224 7007.9342 7688.7119 15595.9352 5111.2496 3346.0625 5460.1166 5460.1166 2510.9399 16382.397 3334.6867 4799.6913 15225.0649 2985.3853 6513.6011 37886.0465 11857.7322 79887.9835 6558.7268 13330.9972 9634.6618 5886.5692 8703.9734 4204.1746 6438.3139 375057677 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 27539.0798 17608.3569 40002.1271 10644.3376 6930.9061 29605.2831 33332.246 22383.515 21783.7745 14121.5282 210753.4226 11111.8597 21545.4409 40068.7662 42288.2249 42288.2249 13299.107 30689.7289 13413.2919 23977.944 69755.3933 180643.4679 11295.7504 15555.4261 22588.0472 25359.6409 101581.1865 18123.1093 20822.8279 6046.4136 15579.8989 19731.3705 153172.6166 22000.365 197624586 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 228446.0812 22129.8484 7809.7953 11971.8546 4698.443 6506.7651 80139.7086 19227.9014 266178.871 9669.4477 16317.5706 20321.2581 9171.0485 9171.0485 27437.6319 24907.2223 12330.4732 14764.4058 40060.5951 19537.2858 17354.2457 20427.565 18491.3015 25245.8893 63435.0671 16904.8332 19824.0045 76370.9532 30351.8224 31183.805 17248.9954 10357.9921 134101441 nirb Nitrogen Assimilatory N reduction NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 75633.6807 2480408.5379 110524.6071 18813.014 21144.5956 8442.1663 35774.3279 31941.0923 19225.8155 36599.2039 28193.5423 973063.978 90081.574 37214.2129 65830.045 42297.2238 42297.2238 16790.9634 56804.0686 11909.7713 40689.1064 59182.1598 44755.3635 54898.2654 21298.5236 18179.9888 41859.0756 217626.0115 74816.4902 42819.2023 14970.8828 44442.9628 57041.2154 13390.7878 72461.8465 192764478 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 153579.4075 23895.6965 116712.1512 44171.7748 20152.8414 11865.1366 51895.5869 304570.7867 49893.0832 63774.2699 86154.4377 137354.7627 14360859.5257 111242.5013 95069.0847 218588.0199 95953.1477 95953.1477 38581.9515 175010.9836 83906.5845 100719.6271 97094.7704 81948.0152 98235.6605 78899.2026 83401.034 117842.9161 169395.6584 145919.0659 112157.8173 45943.3984 107093.2423 171825.2596 113667.2083 59967.9921 340782403 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 59591.133 84854.0986 32234.374 28224.4038 15097.4668 17794.8672 9796.7159 4321.5781 23889.8163 19686.1972 191959.34 265407.4439 27783.9292 33132.5335 54712.6319 22307.1071 22307.1071 14760.1953 50040.6602 16540.2216 8944.8472 15706.3618 11742.0746 6352.5666 90058.2029 70082.8109 16567.6992 1150887.9069 39488.3013 28425.4798 21073.8704 15806.4035 17855.3933 10152.8937 16303.1953 118027455 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 171046.7831 11884.4838 10412.2882 8536.5887 9432.0746 10488.906 9281.2649 8866.7823 45287.795 29288.7752 547490.3411 20078.3203 15296.5886 11163.7142 9308.1989 9308.1989 9826.9483 28403.3464 21604.2744 44834.8904 31149.9105 8888.7182 10167.5834 13223.4814 18382.4174 8832.9018 28228.0633 28815.2055 17225.5124 9477.5898 16548.3667 9571.5851 8499.1788 17034.1689 308186501 ppx Phosphorus Polyphosphate degradation NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 33340.2386 19434.6307 2165.1191 2062.8346 4687.1151 296115748 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 25179.8522 6578.8106 15604.2321 4127.5337 24951.2185 3331.0563 8177.897 2169.0991 9065.3509 3629.4799 2408.8043 11372.7117 71089868 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23618.6136 17307.7096 5285.289 10824.0683 7296.628 6930.8941 4809.3276 5722.2605 60165.9645 5805.6224 5972.9555 11653.7988 6613.6914 6613.6914 41419.6261 21229.5165 6695.5948 4918.6958 5862.7967 8656.2278 8439.7153 20802.9416 10360.0738 12761.4206 9754.3848 2570.2341 5070.7335 2258.6234 5639.0923 380001337 amyA Carbon Cycling Carbon degradation Starch Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 12052.1838 6971.8091 16442.9351 38299.1931 17704.9624 16202.3796 14492.6484 18115.3722 7636.2798 11480.3372 9024.4097 218872.0462 13647.8194 15534.9138 13714.3437 8192.7919 8192.7919 10009.7095 20362.37 24729.7272 11581.197 22977.2655 36698.0435 9054.1094 11641.8883 25194.6939 10900.023 40707.5976 23445.6974 19166.3687 13316.8101 13822.6913 11976.206 8236.6006 17129.7305 60326784 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8234.6422 15065.8607 7603.0151 4263.277 6014.1737 4554.2203 107491.3658 6978.0644 6621.922 9736.6487 9736.6487 8989.0375 9529.9615 8692.9486 40287.771 7225.2969 2973.4492 5177.9663 3903.9796 14010.4879 6994.1946 7311.8621 4209.084 3465.5559 7585.523 3435.1593 241959388 cellobiase Carbon Cycling Carbon degradation Cellulose Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 53995.2763 14068.2339 548393.4816 4696.7136 5516.6487 3864.1347 4475.8837 71694.2125 89426.477 604577.1711 58557.2352 3972.3333 7732.3515 33654.0561 33654.0561 117414.7279 460333.2487 162331.8559 161045.0574 32460.9001 750783.1421 114871.2951 117491.4802 13623.469 115622.4328 185732.5048 118558.282 62785.8923 20039.289 375693.4234 81388.1715 138647.6311 314935.8204 292814273 terc Metal Homeostasis Tellurium Detoxification Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 40194.3802 639307.1617 146169.2971 17195.5079 17685.8446 10254.8214 18407.1788 5494.7499 11636.7385 15791.2177 18074.7389 306941.6927 15988.9762 15738.8855 13012.6809 18673.9791 18673.9791 14280.8086 30278.883 17944.2424 34143.1012 21539.1049 17038.4928 11211.5093 13690.834 18690.6219 8369.8095 36367.9219 34039.3161 23267.128 7454.1976 10241.1102 15629.6177 11362.5427 242786.8825 119116961 alpha_tubulin_Oxymonads Other Phylogenetic NA Saccinobaculus environmental sample superkingdom:Eukaryota;order:Oxymonadida;family:Saccinobaculidae;genus:Saccinobaculus; 841715.1578 13005.3383 44705.4597 23357.7141 22858.4097 5275.6512 98971.667 43882.991 23673.4266 51713.6693 128369.8633 62914.936 658985.6441 194016.6069 98548.5108 72855.3871 122679.9502 122679.9502 40603.0172 96855.0744 77500.4462 59930.2827 862611.458 170128.2189 57494.3815 76605.9569 127044.3212 91189.733 162450.6401 130193.8745 103151.1499 66882.6382 100214.0759 112885.9515 42603.7626 139293.6811 358242541 cysJ Sulfur Reduction NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 86176.6431 28600.9296 13267.3877 33422.9167 4904.7382 7828.006 26447.8754 7916.709 26503.2929 37557.0584 38012.303 2162873.5847 17162.5099 47818.7923 56471.5581 64905.762 64905.762 11439.5679 52862.331 16576.7105 22415.2373 70096.7078 104198.356 19368.356 22207.0375 29437.3771 24324.2113 76405.6394 48897.223 40736.5192 17164.8492 83009.7829 28737.2775 18968.0223 15821.9221 384040853 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 165289.9809 48914.7827 23720.0043 96144.0494 31236.9977 104996.6836 251146.6865 73658.9874 50926.7164 118232.6069 74206.2009 1220203.543 57897.0317 132055.3051 138716.1281 100540.0818 100540.0818 73328.8656 87292.5842 53414.9112 110605.1295 89118.9641 87897.8154 105508.7616 81913.9572 71669.4622 50436.5431 182835.8098 89046.5842 111298.254 38452.0175 74994.4487 73857.5974 49211.0126 49518.7303 115424442 chna Organic Remediation Other Hydrocarbons NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 43651.1918 11606.8995 25361.348 14397.9201 8678.4726 27099.0053 18897.3927 18369.5227 53762.2419 22238.1462 15875.2131 398849.6759 26934.0475 93450.0561 31653.0225 69311.7826 69311.7826 13954.0574 43055.7848 15436.442 42232.9777 57752.3539 52959.8152 13245.8928 14071.9453 29068.6843 64574.8022 318750.1857 18843.7637 24662.4481 16494.2695 35076.2792 16164.2007 12811.1761 21717.9569 170122677 cueo Metal Homeostasis Copper Detoxification Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 32030.7834 35823.2798 34346.4222 32059.3773 9347.1694 22650.8787 26805.8061 142979.2745 42663.3441 53806.0572 29295.039 442250.8682 32077.5695 40728.7019 22691.3135 20652.6084 20652.6084 34812.0647 67693.4276 27785.1144 534564.5193 42966.639 38796.0306 32348.4831 24495.4143 45353.855 25346.4444 80065.2558 36974.6742 42583.9178 23319.5509 37471.3533 77772.6051 20219.1183 78832.18 229611273 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7047.0645 6267.696 15183.0857 3231.4987 4068.611 3967.7064 7632.8276 7944.3926 3349.9304 104554.4163 6776.4912 8058.7276 5364.2297 3501.7304 3501.7304 5569.2766 12566.3329 8469.7167 107321.7704 10156.9843 11873.8338 4104.4996 7971.7361 10383.9367 3490.2386 13764.5162 9710.4278 10645.7707 3156.9631 6675.9151 6152.4001 4269.8196 8671.5695 21674833 gdh Nitrogen Ammonification NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 6657.0917 5318.87 11309.8457 16597.1072 3694.7325 4633.6085 138084.9859 4948.8079 6040.183 3497.606 3497.606 4827.4328 11990.1986 5779.1661 6126.5322 8102.325 10054.6629 3780.3263 3347.6427 9359.2145 3703.6646 23073.8617 4875.252 16745.3826 3766.0856 5142.3391 4304.3766 2746.3242 8775.5687 82945771 arsc Metal Homeostasis Arsenic Detoxification Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 4675.0243 8653.4795 66482.5165 5049.2593 4741.7786 7489.2608 5449.6153 5853.4681 2661.6802 3330.0674 2556.1249 374655394 rubisco Carbon Cycling Carbon fixation Calvin cycle Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 95465.9425 71274.4697 94388.2146 16537.7486 9696.5188 43149.4795 39981.7694 109018.9788 46590.561 36280.5782 64950.8631 76037.4228 684079.5582 38732.0887 70497.2109 34815.7721 64506.3666 64506.3666 24029.5086 81997.8449 41467.4117 71509.3003 81248.2653 384187.4062 43673.0591 55671.1971 53395.5748 46947.1107 101125.9373 152163.4978 51682.5937 124909.0865 28871.5709 51958.9081 46097.3338 84687.031 90104717 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 53506.0669 16697.8932 20749.1109 29199.3631 19958.4725 24529.4061 92049.5086 17588.6087 18759.2521 38340.2522 23996.6358 407409.44 22421.6149 22413.3319 36751.2276 27453.7642 27453.7642 65490.234 54927.9158 49010.2269 30420.5012 63047.222 38980.8254 14179.8945 21389.8685 33327.405 26048.0523 67664.8445 93108.5829 35378.0727 34930.7576 32652.2693 28842.4948 23694.1718 56141.4959 343801859 tktA Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 11890.7758 13675.9401 8344.8008 9160.9712 4841.4146 6232.1381 3407.8963 7455.397 8386.4257 10441.3076 114320.1201 29659.9175 10789.5932 5445.4345 4662.1888 4662.1888 6185.0235 15749.7066 8785.6678 4176.4059 8387.1708 26666.5894 3499.428 7305.8564 11002.4668 7266.6033 11689.9634 12341.7838 12383.9009 5941.9417 7773.6277 7737.6329 6466.694 6276.2222 395647599 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 24758.5505 29776.853 4321.0062 103918.2494 20664.6652 18902.903 21914.1751 6418.4704 11569.8857 10896.414 11504.4612 1567332.977 5866.0458 13323.5871 11173.698 23279.009 23279.009 9815.8397 27117.5326 18383.3787 28000.7752 48914.697 17750.9777 11533.8981 10243.0555 18778.755 15633.0495 86117.3695 17945.1939 23736.3831 9891.3538 17429.9158 15159.7141 6423.6273 12303.9995 242216933 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 18468.202 12469.5075 5900.5106 5006.8916 13398.3273 8285.6173 9943.6067 26221.5057 20002.5496 10597.7882 19269.2886 12751.2637 60005.0905 60005.0905 10215.4123 25215.2554 9844.8463 4448.4362 25386.7838 12723.5892 8029.9258 17012.2659 14419.5977 12702.618 49384.0785 24426.3294 14429.9413 9088.807 28414.9293 25971.839 21850.2024 16627.5363 320334455 cda Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 53533.1712 47254.9937 119341.7219 37848.2605 137260.6737 294003.3593 28524.4725 49794.3277 155479.3261 35243.2169 190528.0004 71689.7183 1382979.9534 105882.1521 115459.0138 61091.1104 93760.2625 93760.2625 44055.7939 139880.1877 66950.4426 105820.6608 78814.5587 76789.6397 47948.4979 62221.7631 59635.6157 49271.6487 134199.5795 61026.1415 90846.2824 38177.4522 72916.8125 86809.134 81682.9611 53877.2686 297204713 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 276830.1768 71641.0961 24013.1515 51619.3381 2099600.8312 135758.3978 316772.4615 11343.6615 12738.2333 16557.568 14811.5498 1117871.7801 19541.2952 20535.6172 47482.955 41749.5635 41749.5635 8964.4326 74899.7309 30060.801 95071.1807 49971.7507 13687.0245 22085.1984 32747.996 219395.2275 40702.5003 114779.9899 40166.618 50791.8811 59426.4574 26744.9644 23717.5787 22324.1897 16913.4626 363422363 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 22290.2472 735537.9171 61888.7416 45846.4249 28354.6569 24568.8651 12213.6701 7809.3799 29481.2598 23914.9419 379419.2374 17449.8116 33371.7854 36547.5865 21354.8413 21354.8413 16625.0975 13975.0499 12642.5562 99728.631 14554.54 133166.5194 7595.8604 14682.2295 25310.308 6724.2281 73436.6118 23987.6288 16410.2417 4119.4327 20692.8492 22319.7599 5952.028 14417.7928 378556245 cellobiase Carbon Cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 4774.0134 6998.5219 3654.9698 10503.1821 5485.2194 2803.2417 22263.383 4373.2488 49149.3603 5556.4995 2344.8538 3662.6583 5466.9718 351717406 mer Metal Homeostasis Mercury Detoxification Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 59514.927 11107.5984 36283.8856 44960.8094 299720.5862 30736.5159 599532.6732 183888.0908 31960.8375 40913.9575 115593.932 65856.416 956640.6041 55087.1734 110264.3936 75550.2007 39839.049 39839.049 28965.8441 83995.6407 52823.0182 160922.5198 53483.6505 85330.5203 32998.2263 63589.7115 166513.2287 93796.7277 131566.8248 64603.1985 323115.2116 38101.1215 66350.9302 172998.4506 82186.6302 43869.7889 83844818 hbh Organic Remediation Aromatics BTEX and related aromatics Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 5985.9466 328116.458 5891.8039 9671.9822 10328.7825 10715.772 6474.9847 5922.6801 3063.5892 370962.5856 6772.2294 6270.8719 3878.5814 3878.5814 6529.3586 11300.5055 8610.4586 15396.0982 6911.4182 10756.0636 3025.2372 3339.7412 11097.539 5999.3631 16203.1269 8234.1794 8949.4756 3568.2475 5981.024 7897.8351 6954.9342 23162.4704 402827366 cpna Organic Remediation Other Hydrocarbons NA Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 359574.8059 13364.0011 2863.3396 4047.9024 4550.3437 10317.54 3162.2917 4935.802 13863.853 13863.853 4307.4046 8202.3156 6333.0515 5041.1036 7407.4698 2728.6167 4890.1545 8243.5025 8949.4533 10977.951 6005.0011 6834.7609 2281.849 6385.4269 5743.7225 4055.7733 217330295 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4692.107 5152.2439 74495.7257 3868.4468 5033.6483 4205.0614 9462.4672 3034.5574 2758.5127 5883.3737 14955.0157 5296.7765 6321.0886 2226.844 3582.2107 3505.1773 3720.2699 291200240 cysI Sulfur Other NA Erwinia amylovora ATCC 49946 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 4449.826 9182.2857 7026.378 13443.2664 5519.8067 4546.5635 2330.8422 6154.4869 13184.6822 3166.5278 4748.6281 17423.8959 239613261 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces dermatitidis ER-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8403.9339 12307.937 11887.3543 17159.2201 6587.1525 8897.7285 7929.2366 3064.0395 7853.1946 74015.8135 4344.0061 198329.5234 7306.9485 10971.6618 8275.1947 6157.6547 6157.6547 5441.532 18581.573 8517.3746 5851.314 8543.7824 16886.3595 4783.1615 8268.7575 11409.866 5888.9759 23412.1 7556.0524 16721.566 4292.3083 5235.4849 8054.5013 5905.1103 11797.6198 371445095 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 6815.4178 6338.8869 15901.6963 10879.67 6240.3655 6018.1686 5443.2913 19355.744 86167.9172 5309.7192 5348.2893 22239.143 10157.9152 10157.9152 12986.3548 9009.4426 4832.364 7718.8399 7008.2481 2506.9007 3540.9219 9516.8566 4080.7102 14183.835 5793.1828 7262.2753 2592.4912 5880.1351 2738.182 10026.0232 259348868 phn Organic Remediation Herbicides related compound NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8437.2703 22659.0615 12491.8517 6778.5565 5140.6687 5529.0197 3672.2528 7050.2187 12861.0833 6455.639 291020.003 7137.0938 8979.9427 12114.1407 9388.5176 9388.5176 7589.2183 15800.6613 9630.9135 6306.4675 10903.0821 16946.0421 8103.1864 6694.6368 14768.4219 7471.5924 19707.4109 11095.7922 21327.5581 6045.8262 7774.1236 13806.0237 5826.7738 12328.4195 192764402 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6987.9313 4651.7778 6331.7004 3795.1147 2418.4633 3303.5885 10510.0979 3791.9702 111498.0977 4040.3707 3884.3721 7334.7162 7334.7162 7268.4601 5576.6662 3048.0058 2669.5172 5325.483 12468.1634 3686.4172 5197.1676 4280.3522 9347.1257 6377.1305 2993.5892 356690605 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7061.835 6016.7406 13344.3782 14323.6931 6141.5255 3076.6338 2387.3669 10168.7071 6834.5616 3285.9852 148031.9779 8578.5352 6494.7041 6150.5601 4946.9619 4946.9619 15543.1791 10823.3265 8352.7617 9245.5531 8808.1522 10467.005 4330.9287 4951.0443 10331.0616 4214.3757 18387.8731 8034.1309 8825.7054 6315.0675 7718.304 5980.806 5348.519 22100.8154 333931182 amyA Carbon Cycling Carbon degradation Starch Serratia plymuthica AS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 32374.4359 12255.6864 18111.6386 47598.8682 15356.3738 7321.2981 283237.9208 22886.29 19573.371 104745.7807 45392.6387 48977.1215 885632.1787 84755.1537 69991.5645 69740.6332 63504.3374 63504.3374 27367.3168 53875.5043 30427.8456 33342.7444 33531.8632 25516.9733 78846.321 18542.2797 50012.5375 27248.3056 71629.2256 104047.8634 38489.8629 19033.0052 22425.6296 22281.1275 15104.0196 37861.165 296284160 ppx Phosphorus Polyphosphate degradation NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 113842.1051 42879.9957 46167.4211 24880.9947 18429.4277 28217.5902 53689.0769 135637.6766 26064.1255 96660.3994 40551.7892 3036397.325 31559.9698 49331.2227 81474.1319 48759.9087 48759.9087 36838.4413 87861.5573 36535.4391 26462.6097 75384.1387 89808.7838 32491.4151 48488.8629 51338.6867 84638.8377 140199.1937 60268.3096 52704.7074 32387.4453 65371.3478 36632.472 77441.6958 241729.5304 254512902 ben_bcla virulence NA NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 11278.9808 5132.1959 4937.8333 14378.8282 5044.5492 4294.2901 13554.5992 6545.6508 7278.9126 4333.7453 164448.2509 9389.4098 14803.613 5692.0789 4351.1441 4351.1441 6075.4187 13396.3656 11960.9905 5841.4012 6828.729 9072.7488 5270.9851 4383.3278 12370.556 4337.9401 14738.6579 5506.3131 10402.45 2418.6714 6813.0859 5674.2281 3216.6804 13138.9251 340778103 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 30553.6896 5617.4814 6220.1051 13080.8711 13597.2629 126750.4456 12562.8502 62805.3116 14813.163 45044.2677 32576.86 578975.0651 11649.4805 18577.9711 21410.3786 9193.5655 9193.5655 21701.0601 24654.7322 10419.7057 8685.2831 10882.5458 9040.3378 9479.4815 12845.8382 43039.4081 20244.006 34717.2475 15492.2604 23099.5739 22315.8338 11878.5838 21637.0004 18003.7047 7834.5873 299772112 terc Metal Homeostasis Tellurium Detoxification Acinetobacter oleivorans DR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter oleivorans; 5012.7975 104922.8571 7726.6174 4466.4909 12845.1904 8571.009 8897.9529 10239.8377 5085.0618 154021.1816 7780.0555 25706.0606 8991.8591 4415.7004 4415.7004 12937.3611 80532.7042 10575.3897 4840.06 2242.3056 7076.8682 22817.9259 5725.9994 23956.7299 25467.9376 11906.139 8788.7828 9591.0753 10688.7812 3783.5846 8140.1838 76803698 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 14174.7213 10800.219 18298.2981 13455.4537 8261.0722 9870.2304 7063.3996 4275.8462 6664.6078 9600.8399 4720.6371 225245.3988 16107.9586 6589.4319 7771.8107 5274.9175 5274.9175 6951.2015 17347.8637 11118.2984 11954.8201 10852.1264 9508.24 4566.6502 7440.5419 30800.4986 6654.3505 19919.2867 12501.8164 15120.5196 9926.0965 8172.9002 10023.1129 9847.4433 15818.8028 259476406 amyA Carbon Cycling Carbon degradation Starch Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 35233.1395 12139.8928 23835.6515 34574.3642 451751.8222 5954.949 15778.1607 20008.9328 18134.8889 26510.0865 26294.6224 22919.9682 558036.3809 34393.4832 30262.8572 28258.1395 26046.6741 26046.6741 18100.8 37943.805 26473.9329 36663.5237 55730.1169 112474.2882 35986.863 21697.3293 139006.7088 25123.2654 117240.5014 85745.8191 37618.9618 14418.5183 24414.9721 38241.2585 40736.9089 71305.365 296094855 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermosphaera aggregans DSM 11486 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermosphaera;species:Thermosphaera aggregans; 8884.1446 12249.7465 3154.0054 3094.2825 4546.6191 3874.2666 4796.2795 90538.8625 4386.4496 3987.6514 6087.3447 10653.3425 3929.215 7779.4534 10261.1934 12363.9238 3410.8894 3100.8629 5300.0781 4415.9084 5722.6952 221726822 nirb Nitrogen Assimilatory N reduction NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8941.3845 3674.4981 2225.9487 2572.7495 3414.1877 3601.0033 2867.5965 60617.4347 6111.8074 10248.8902 5071.6069 5066.4831 5129.2624 34046.9748 2732.8961 3396.6095 2894.9816 14432.1608 4855.9024 4923.4122 2315.2673 5390.2588 5902.9535 3043.7032 5740.9287 169624696 cutinase Carbon Cycling Carbon degradation Cutin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 327445.304 45445.2181 20815.811 26136.2842 22546.179 7548.5307 94442.6204 81971.6308 31093.8577 121445.847 4736421.4746 82239.8956 117821.2898 163016.2383 63695.2033 423637.6851 131449.2104 140109.4319 131752.7409 423872.8315 62126.8011 52483.275 196921.3888 126489.6973 133113.3815 278623.5751 297164447 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 4612.0946 15232.9799 13134.2633 71543.3453 4255.6254 7237.5774 5619.7083 11068.0726 8230.9246 166891.0484 7569.1896 10858.8736 19919.2512 19979.9473 19979.9473 5085.7915 7492.4732 10260.4602 46198.9414 5368.3633 5134.3977 2443.9855 10866.2234 17013.1859 2314.2339 24719.6231 43898.2766 12558.7745 3619.2463 4541.223 12510.5319 2205.3842 377537450 amyA Carbon Cycling Carbon degradation Starch Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 5094.1135 29575.6403 13250.9885 23519.2174 4646.4142 3221.754 70166.1644 4145.1621 4093.3387 9183.0224 4580.4216 4580.4216 5391.1469 5168.7536 4519.836 41745.2361 8622.9042 8247.5558 3835.2812 11945.6004 4090.9936 6437.1375 5992.1031 2953.8716 128617.6521 2127.1951 6778709 dsra Sulfur sulfite reduction NA uncultured sulfate-reducer HMS-4 31150.7552 16489.8854 13283.4984 22308.1756 8553.4151 16976.8317 14960.3269 7257.7385 11200.995 18351.0618 7347.9519 559113.2068 17228.3246 17211.7299 10697.9203 20720.4426 20720.4426 11863.2889 21290.923 17770.0422 21225.416 19538.8678 28017.6963 13029.1419 8786.6094 45432.1939 11619.1981 25450.6956 9754.2715 27274.0549 12197.7244 17875.4536 15795.6878 214542.0701 20882.4617 151939786 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10763.5923 6292.5004 19638.3872 26605.3837 5636.4591 9896.1622 52195.1401 4542.8474 9275.2587 13155.2381 9412.1315 247895.2434 14331.7616 17521.1021 9083.1471 7755.5426 7755.5426 8403.3906 34536.0842 17761.3081 45467.9535 13422.5452 25395.3383 6272.9421 7888.471 21506.5284 41050.0574 235712.3053 28151.237 17803.1345 7267.5235 11139.0706 8682.108 6710.969 13803.1926 352682227 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 8275.6987 250969.4513 174615.1166 10517.4798 18951.4196 59489.3447 28982.9205 10678.2863 6631.9453 8142.7506 278431.0667 10977.9684 14179.2175 30433.8932 30433.8932 10993.6143 12174.2599 20565.2391 9921.4286 8645.2054 4550.2112 11189.9117 10997.427 10227.2754 29036.2061 4425.3596 6791.279 13161.3986 3980.88 46118.1154 374585062 ppx Phosphorus Polyphosphate degradation NA Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 5914.4633 8737.6739 4621.7314 5122.1146 5653.6377 3493.4452 6358.1804 7639.3141 2826.0488 77021.9415 7101.4361 154695005 glucoamylase Carbon Cycling Carbon degradation Starch Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 17472.2756 11197.7244 15995.3275 10884.1574 10988.8228 13734.2038 6354.3014 12937.1581 15650.1426 6843.249 271091.9722 15114.4575 14944.3309 7902.3465 25425.2095 25425.2095 12119.5152 22826.7573 13802.7754 15976.4782 19777.5178 20084.9938 9008.7776 13532.1533 19968.8668 6960.6085 31085.2527 12290.1127 17312.1078 7349.2113 11745.9512 11785.6618 8804.6634 23423.6842 372272125 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 19811.6159 5078.758 6556.0581 28224.7442 5496.3136 3339.3896 7445.4452 2537.3687 22233.3939 12746.1165 20121.159 211258.1564 12735.5896 18664.3639 16853.9716 14257.9464 14257.9464 34975.5507 32423.3094 16227.1706 11334.7401 18053.6557 6331.0379 8175.6645 19684.5465 15935.3804 28111.4466 67294.6187 26852.7827 40907.8746 18217.5823 20537.6837 9851.1438 6219.0504 25808.2196 288942449 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 8409.4804 6842.0409 4492.4323 3033.214 10999.2652 3036.204 33119.1264 17471.637 14059.6699 363866.0676 19983.8421 14462.5063 11578.2976 14901.1064 14901.1064 6703.1416 17019.2761 22138.7644 13942.3861 22290.0275 19079.902 4589.0403 31731.9025 10696.0264 16176.942 23154.5329 11311.1087 21321.936 6228.1983 7041.7191 27836.7341 35042.7649 13534.6379 307631250 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 4835.6113 24099.4682 15041.8496 6661.3382 16465.526 3785.2816 10319.1101 2905.3683 10683.0651 5460.9761 4800.7055 169762.4624 8756.7053 22161.2053 5198.1277 12508.7117 12508.7117 5888.6825 15807.3447 7278.5265 10253.2503 31271.7744 16486.731 4065.2635 6232.1963 12391.7965 5645.2221 12413.1415 12571.5919 14247.481 3489.0159 5301.0347 13420.6949 3766.6559 8251.7582 110819001 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 11262.1993 41366.1994 17105.9246 36722.7378 17205.2697 15298.499 10075.053 8450.1662 19279.9813 16831.8621 17248.8075 350709.0954 26874.5529 21697.8264 33534.3362 20935.5952 20935.5952 18060.8088 19361.1744 17685.2871 123132.9568 15878.4461 24439.5876 8594.1685 14978.1553 17832.2134 7252.6481 22366.1213 14788.4216 20370.6516 20883.5793 17661.8268 10903.3359 9369.9052 16233.3084 27378647 fcba Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 40922.1532 34206.9214 53499.5578 9302.2475 12265.5715 14089.3659 86531.8526 35171.9691 59617.5648 22276.6974 32019.6313 656536.0509 22082.1712 27377.2815 40473.7528 43812.947 43812.947 17837.8967 198280.6168 14216.4494 107005.2983 93817.9887 138786.5293 22724.5606 36459.1644 37285.5325 26656.1804 113078.9573 31465.3385 44879.0434 15480.0547 124627.0229 107744.485 25780.0939 23968.1602 320134834 cda Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 28157.5276 14065.8853 29959.7467 163187.2919 9493.5343 21293.7877 8117.4615 46726.0697 22439.0858 24134.4032 1222630.9813 10771.559 47866.5111 70113.5932 31582.5996 31582.5996 26068.3152 28039.993 21366.4553 171805.1077 234207.0798 38955.6702 21822.6161 55692.3416 24669.3159 47279.0287 67732.0724 59550.615 36168.1619 167051.1708 57228.4775 83616.0927 23765.9721 148840.1286 218564158 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8656.0143 12789.3333 3570.4728 14786.87 14231.6617 8229.3575 3692.247 5606.2779 23987.2119 7432.9182 82050.454 7409.0623 5863.4273 6443.2584 3815.4079 3815.4079 4346.2825 9461.3869 6909.9594 7078.5994 20924.2553 4792.1715 6342.9233 5975.4881 9495.0793 11309.5978 15452.4456 21457.1244 9172.4828 5606.3462 6457.6115 12890.7481 4241.873 41761.3917 148845611 amyA Carbon Cycling Carbon degradation Starch Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 11286.1827 9239.7528 7989.9027 9908.2257 6410.2044 4568.4351 7240.6167 10867.1184 3761.5077 129369.7438 6832.0773 11112.6511 2496.7984 2496.7984 7033.5117 14096.1304 9325.3814 10065.3316 10920.4758 17158.3301 4659.8479 4757.6114 12761.9785 3931.8249 18120.1384 9446.7531 10867.6776 4994.8999 5651.0762 7777.0813 4601.9952 14425.1872 257055210 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 57458.5396 1589483.9254 455192.5017 10991.7459 37457.003 17317.4392 6109.836 14734.3535 11140.3098 14386.5319 21044.5374 20232.1281 943049.1367 21327.5142 21529.5137 24492.8951 20758.588 20758.588 32043.8655 64592.9403 27543.2681 19282.517 22996.021 506423.1983 9756.0897 22502.9519 25695.5801 10085.2377 38944.2066 29495.2626 29680.4377 15033.1848 19944.7058 13781.5044 14793.1573 41470.0931 77164810 Sir Sulfur sulfite reduction NA Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 9298.1443 6092.6272 3647.3762 7553.4891 3821.1202 2696.1785 9295.9161 6540.7779 2594.1331 90530.6522 8635.4554 6665.646 2417.4619 2417.4619 4245.3499 28643.7773 6860.4537 6709.5497 6106.7454 3349.2874 3299.1776 9621.866 4157.422 15203.4831 5290.6687 10309.0401 3829.938 4863.76 7378.9937 4434.7126 9868.1304 4633560 nosz Nitrogen Denitrification NA uncultured bacterium 696W superkingdom:Bacteria; 19810.108 22790.7471 7162.1729 16486.1571 33659.6259 12699.111 21884.0923 20108.1303 14900.4955 16608.4397 69062.9635 11712.2086 295157.4682 20238.1462 17398.293 33570.9459 35331.244 35331.244 14897.4165 33942.1839 37878.6912 25500.9561 21250.8621 37008.7558 11517.825 28613.7997 34538.9362 14482.4189 51291.6062 21298.3998 29739.9318 212956.5601 14737.1793 17585.6631 33163.1508 21436.2868 357009841 terc Metal Homeostasis Tellurium Detoxification Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 85162.5746 23318.4265 16372.8944 24352.5949 72234.614 46163.2772 31943.2065 16242.3091 6072.8049 18845.4998 20481.3645 22057.7554 351976.9558 19749.4714 17439.8104 20210.1716 11916.2678 11916.2678 13769.5753 40778.2737 23417.4279 22744.507 38961.5813 62715.5759 19144.6078 31332.6901 30244.8099 21186.05 45305.5005 65501.8408 27394.647 15553.7499 17284.3754 18126.0329 11858.6969 29391.1754 310795264 rgl Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 6887.9961 5109.6122 6160.8798 4809.4086 4073.9846 5183.6899 4818.9292 5879.5951 4980.8344 5377.5991 5377.5991 54806.3388 19977.6359 6607.9775 15414.9399 2671.141 7199.2595 8151.1578 2941.629 11595.9083 7712.3738 9362.2516 2627.5239 4339.8634 3337.3635 2368.4311 88855479 phenol_oxidase Carbon Cycling Carbon degradation Lignin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 9069.3604 17035.8556 21750.3411 17914.7049 60488.356 16548.5699 19454.5276 20914.158 104902.0696 14957.7688 167341.3621 8529.2519 4353.8902 4353.8902 5195.6475 15224.1982 7570.3138 11711.9399 17273.4714 48904.4934 12136.124 13288.5228 10926.8026 27873.6402 21739.2433 12120.7759 3785.4389 6123.733 33713.2421 5026.1015 12721.9998 150026827 mer Metal Homeostasis Mercury Detoxification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 13605.4034 5728.9904 19380.3684 10810.8907 5746.2011 73832.4283 21142.6002 7630.4315 10047.3622 57118.4992 5187.7596 5187.7596 8320.901 16416.575 6995.4041 12854.119 9954.6152 11670.8293 69576.3745 10178.2069 9289.9467 8170.206 19451.5265 19848.7141 78682.0994 8588.655 38408.1383 11164.6263 6174.9521 8364.4033 304568766 norb Nitrogen Denitrification NA Corynebacterium accolens ATCC 49726 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 59845.6557 3628.1682 2282.2883 7381.8142 3855.2771 6038.1965 3288.744 3917.1516 4266.6571 4557.7028 2322.3372 2322.3372 4365.1241 10692.3902 4861.1992 27255.7555 5984.6585 12286.3506 3537.8897 3908.5785 8127.3944 3550.5583 11605.1466 4669.9152 7901.5858 4045.8752 4374.5197 4785.7924 3968.6343 9063.8288 355538761 ppx Phosphorus Polyphosphate degradation NA Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 8539.6912 5459.1979 2915.9539 2915.9539 4130.6495 3917.5489 157285572 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5186.0789 1531975.8148 19076.7717 4278.8629 1999.2323 3240.9642 4307.8815 69604.0103 6970.7825 4609.0682 3880.7858 2341.1439 2341.1439 4043.4247 7293.2972 19905.0516 5362.5984 4886.8949 7952.5299 2906.3892 25982.6615 7778.3523 2211.3468 5023.0535 3572.6183 7675.2457 2376.0642 3593.243 3698.1804 2600.2147 7010.0586 109452416 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10298.5246 5951.5376 4634.1393 2803.8367 4882.2172 6135.8236 2715.3831 87677.8353 6115.4581 8716.9812 4143.1948 2923.1724 2923.1724 4450.2774 9825.8437 5127.0874 5971.9518 8542.1276 6374.0236 4082.4068 6039.3331 3353.0139 12603.4725 5524.3885 8180.6855 2979.951 5264.3481 6009.1567 6666.5405 10693.0299 99083367 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8784.6938 5123.1362 3312.6082 3468.3703 6598.8488 12989.743 4046.7031 165191.2428 14475.8763 801369.6772 8507.1718 4764.6607 4764.6607 6188.4383 13652.0125 7231.3254 7171.4552 8959.1539 11212.1875 5422.9165 4955.7626 10315.5678 4277.7422 5326.471 4304.6124 9195.7476 4084.982 5570.3748 5731.5893 4570.854 11701.343 359314961 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 10149.4643 18281.9293 15098.9164 23746.6118 10251.0828 2221.5711 9398.9274 11361.2 8393.2308 12015.7653 5522.9561 5522.9561 3457.4927 12056.2224 7350.6843 10587.282 11679.326 17413.9369 12088.6351 3988.8916 5215.1458 16236.8207 8057.7748 9914.7892 2780.2205 3822.266 8400.7246 6709.3438 118168718 nitrilase Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 36394.9905 18278.3396 25780.1876 10136.4238 15422.8027 7058.1329 12766.8259 10059.5646 8988.7362 13417.347 13648.9422 133718.3328 18491.0218 12003.3335 25593.1497 37782.2978 37782.2978 8251.1044 49858.892 14805.2635 24228.4643 32144.1213 12579.166 20398.775 28929.3586 25521.2575 22378.2924 38861.6421 20350.3712 14226.3107 19365.1465 16296.7201 25627.949 31986.7053 14557.6301 374613845 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 10078.4938 401591.2388 6625.8423 13158.839 2228.3479 3394.6131 5650.7012 4558.3565 67325.7555 4896.0759 6918.7356 4765.8541 4765.8541 3527.456 5500.1563 3798.2799 4331.2195 4307.9 6171.376 10159.312 3905.5574 14184.9326 10261.471 11404.434 3695.4877 4964.5772 4067.7736 2390.7434 87303484 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 193482.4416 23243.4255 45008.7632 43991.1195 9184.866 106958.1505 47362.749 20642.9665 36198.197 58599.7528 48522.6228 1592739.3553 47593.4655 74813.2255 236820.5375 51792.9242 51792.9242 38078.1847 216869.9918 48246.572 43182.6659 101058.5964 50281.0277 39690.5035 35783.7538 87961.1348 53103.7358 239257.4268 90304.7844 84376.9383 20501.0965 33523.4001 70783.3122 65026.8252 111774.0889 159465325 mg_chelatase Secondary metabolism Pigments Chlorophyll Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 25192.3737 157112.6165 314878.5393 38673.8613 28879.9681 8960.7188 32692.6406 14086.6628 32562.9581 52412.3424 34297.6827 373308.3999 29061.1116 46240.5641 27906.4663 21200.3727 21200.3727 19779.4386 74283.6204 32098.5017 21193.5473 49653.8989 28626.2994 31595.0957 37832.2503 46039.5766 33035.1067 96029.0328 32425.0059 59840.6486 13262.8885 26321.4375 48674.0212 21960.2281 19689.71 85706023 soxY Sulfur Sulfur Oxidation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 11138.5721 7408.2914 7394.5645 5689.4227 4006.3756 8415.5265 12658.0089 20128.2067 123592.6045 12178.659 10680.6774 6362.4346 9765.2237 9765.2237 5932.6288 14342.1605 9215.1582 137682.496 12740.848 5995.0412 6896.2775 5098.8248 11646.6241 5462.336 20138.5356 14497.6804 13170.2034 13678.3455 7941.2275 7342.4472 5563.6885 8056.7136 387852213 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cronobacter sakazakii ES15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 6819.7414 10426.6326 8532.8144 7775.4249 4260.2949 3822.7355 3822.7355 5746.4544 10098.2829 7358.1798 2683.7866 2988.7321 2159.0508 39649964 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10291.9716 13157.506 8706.9499 20386.4065 8655.1124 6367.9419 5867.3927 12010.0025 28334.358 92954.3415 10618.068 11075.5901 10063.6903 15396.121 15396.121 13315.9101 14714.5864 8169.5674 21369.9141 12734.2258 28052.7078 16291.2203 6526.8937 15355.5915 7769.5125 30766.3027 15805.0208 14770.6254 6494.9994 7748.6471 15602.85 4896.7194 14799.6471 238505300 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 5116.0534 15423.9892 2292.2649 11159.8026 7021.1943 6344.6864 4042.3137 102220.4391 6426.2681 6510.6207 50639.1432 33714.9291 33714.9291 64081.4626 10258.3789 10487.1454 12905.4965 125092.7152 8884.5684 16390.0287 12688.4627 18953.8891 49091.6637 9988.4065 16652.5745 2656.7081 12174.7529 7239.857 3310.318 344200644 TIM Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 53998.2755 36090.3293 65974.2378 25239.112 16000.9733 25228.8441 72284.0548 47781.8136 51802.2761 56595.0927 41609.7157 896539.511 58858.59 46630.0456 113666.2623 48130.4023 48130.4023 38881.0364 87178.7593 29638.7415 55446.958 74361.5597 74756.9656 34315.829 41919.424 140716.5519 33803.6838 97432.2089 74730.472 111615.0852 42459.3905 52927.3963 56930.585 31058.8807 88899.4201 133910295 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 16336.51 9915.9262 6498.21 3120.7933 9939.6559 6639.435 9795.5194 6140.3489 418929.6921 7642.3994 6373.2881 6031.0673 3957.1598 3957.1598 4792.4272 11487.9642 8389.6575 10351.04 12276.1267 8547.0553 39224.062 6384.6003 7352.813 5970.8778 20034.7958 16291.9789 8873.2757 4448.5362 10487.1597 20726.4883 6370.242 9726.3373 78093576 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4216.9798 20978.5459 5124.706 5284.9984 9507.0012 3691.5429 67239.4484 4171.223 5438.1871 11766.8232 2703.5912 2703.5912 4045.2224 7720.2225 7391.983 6192.1109 4279.3638 8420.4678 10468.0728 3871.9924 11636.384 9296.7443 8175.418 3451.4984 3908.6437 4502.2829 3026.1998 43032.7225 91782630 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 14699.7353 12186.5494 29470.3356 9163.1598 8290.8333 67562.0213 6947.7737 32326.0418 5105.1158 212204.1069 16427.1587 15738.1947 8582.6724 6553.21485 6553.21485 7328.8877 33701.223 11298.5131 16684.6315 8722.2549 5646.94335 6269.14125 18356.5384 12147.9772 34069.6239 10686.84145 17280.2389 12093.8947 9401.7972 9366.3691 5672.3723 21605.297 145218136 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 10397.2419 5622.4654 19408.5346 3951.5499 2838.4333 11152.9578 9005.3479 3700.172 136462.8349 7612.8292 5599.8834 11351.4289 2734.3118 2734.3118 6516.568 13030.0808 9590.2768 5888.4286 6004.6552 9010.8403 7812.9952 5112.0016 6985.976 131815.3089 19085.859 11114.0629 5881.843 5639.6117 9051.6561 4760.0652 6675.554 295114731 amyA Carbon Cycling Carbon degradation Starch butyrate-producing bacterium SM4/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 13308.9333 12673.8842 25392.2234 10119.2898 14272.7842 30118.8069 6371.9315 212931.0649 21411.4239 16079.8809 321937.9312 12186.5682 15399.4271 23170.8931 22874.5251 22874.5251 185306.2656 15407.8429 26214.9154 11855 20190.6258 8631.5628 29526.2541 11271.2051 19522.2049 5948.982 27562.8565 25132.5298 21188.6831 8480.3367 27178.6096 15589.5026 160910.6048 43441.1113 227494347 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 22700.2003 66339.1114 12034.8937 12628.8328 260158.7073 13011.924 17951.7602 18310.5513 38029.7168 13495.907 368882.4999 45191.9856 27958.8323 22421.4558 15801.0046 15801.0046 15640.0288 37399.4868 17799.7682 27549.1741 27325.7838 22608.2013 13405.8255 15049.1539 27206.5495 22892.0962 59316.2952 23578.8942 141179.773 20960.3177 13635.055 17964.8619 8574.8978 30206.7009 377571143 catechol_b Organic Remediation Aromatics Other aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 112986.2999 211728.859 14752.9059 55373.3308 33089.9573 55588.4318 39897.557 28493.8925 55838.8696 54310.5386 37382.4832 849385.3152 37091.5585 43470.1611 41298.0334 44126.4624 44126.4624 93251.5629 61491.364 39951.4552 24563.482 131146.9574 54262.3152 120602.1586 72703.6054 189625.9155 96094.6629 139866.9943 96913.0298 83158.0382 64426.1219 107650.3501 99644.2003 30654.4375 62529.264 89068265 ppx Phosphorus Polyphosphate degradation NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 103503.5092 26114.4634 13017.9131 45967.1494 8247.6764 23725.0543 162219.5923 21053.3902 43087.3493 36560.9718 36057.5498 587922.3099 22591.4361 90427.3658 50483.4404 49344.2483 49344.2483 45331.8402 99722.6334 26445.1089 145132.0735 84686.2229 85085.0505 28152.451 54521.3825 61762.8977 38348.0926 158610.8839 49956.4473 64749.7295 21307.6109 45210.8403 88602.1538 134501.4333 49661.281 375101041 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 13682.2143 53889.0815 9581.696 6633.1444 4514.457 6319.1785 12929.9504 4854.6692 23761.6812 7364.2332 133883.2277 26545.535 13825.8943 25796.7714 14450.5531 14450.5531 10879.124 20953.9 10618.6123 28760.254 11121.2543 30341.6168 8399.4605 9758.2025 12423.8497 6971.904 31284.8432 18927.707 16988.2177 4622.6992 10504.5223 10990.8671 6582.0269 6456.6272 254283271 fccab Sulfur Sulfide Oxidation NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 10094.184 5758.3057 32670.524 6834.3593 7772.0932 15083.0928 2809.4846 6433.1972 15152.6094 7998.735 165065.3506 7995.6405 9264.9706 6414.3978 5547.499 5547.499 6324.9902 12436.216 7204.9083 7740.6538 9238.9619 16145.2006 4712.6132 4217.805 12162.5463 3939.5833 17490.5759 10439.4624 14204.893 4751.209 6039.6905 5057.0691 4172.089 14929.5736 197723050 rgl Carbon Cycling Carbon degradation Pectin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 13461.998 5729.6944 12510.2728 4554.1112 7069.9975 3340.083 3724.1883 13423.9783 82874.3693 5170.0284 5682.1875 6685.2637 6213.2882 6213.2882 3430.8292 6616.1755 5523.7991 3710.6733 4440.3761 4572.5574 2215.9793 6122.4726 8457.5859 2232.4396 11568.9351 4122.0475 6278.3068 2634.1717 5450.2593 6011.4578 2347.4393 6436.9598 300717934 ppk Phosphorus Polyphosphate synthesis NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 43423.0214 10446.8258 4395.8742 8266.169 4433.6209 86572034 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5971.9857 6578.9222 35632.5409 6827.1023 6525.9002 20257.7449 7407.1516 3694.3084 92207.7085 5371.4963 21468.2501 5297.8404 15349.2996 15349.2996 3327.8988 9121.7901 13265.2406 6307.7798 7452.6092 2738.2329 5998.2038 18296.5911 15252.2704 6514.735 7757.8873 11019.9197 8704.6363 34110.8813 3420.4885 7554.9836 343505143 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 4926.2486 3658.9274 2224.2091 5079.4213 3523.4929 5013.6536 3193.5079 6520.4446 4506.1971 3775.8652 3970.4104 4792.3204 2070.4709 2250.5677 19111.7263 2155.5989 4085.2957 2768.358 2880.8024 2966.6647 6032.7101 83650966 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 6079.7453 20562.1049 3579.0534 5983.1571 3789.3338 8088.82 6124.3703 5810.7409 6066.0655 2616.3035 53535.9918 5184.3257 10532.9882 6000.871 2231.6636 2231.6636 17124.1451 8636.176 8256.6625 7920.4913 4282.3011 3523.7893 5532.5046 17243.0976 6710.4171 12096.3858 3946.4417 8218.538 19963.6635 9775.7198 4003.2079 6216.4563 62390048 catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 38473.3874 137535.7054 6481.3999 31559.1282 24512.281 10507.9446 34006.2664 24293.0422 97128.9717 6001.3728 26277.5491 35737.5963 49068.8968 51424.612 51424.612 25491.9293 55115.6729 16114.193 40373.2831 35287.9474 17781.9727 32182.9949 28901.0124 23060.3483 15540.5479 52195.7298 42717.3381 36445.3045 18673.7923 29748.7716 56224.9777 24944.5202 18399.516 383458899 ppx Phosphorus Polyphosphate degradation NA Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 728859.7572 9808.6722 9301.1031 151461.8609 11193.8845 21163.9433 779709.2337 8117.0339 31720.6487 27069.8719 49203.4388 753310.6223 38061.9587 38899.8627 80731.6559 80042.7962 80042.7962 540050.95 465046.8522 30112.7454 168816.7524 32367.2273 24176.1717 46638.7063 43936.7067 59696.4786 26435.7681 63790.5312 60132.3497 51430.8071 19028.3603 384076.5646 43305.4122 474971.5729 24805.6493 60476352 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 12359.8612 5577.808 19952.4299 137648.7216 32810.8176 5823.0987 18850.6225 16019.5846 14830.05 13649.1914 481469.0396 24584.7082 24256.2315 27403.1076 19715.8365 19715.8365 15611.8411 11053.483 20974.0841 25203.2232 9836.7035 4277.8013 25713.7574 64213.7343 12960.5443 81257.0478 80758.0095 54945.6878 26548.6016 35182.9346 16570.3445 4890.592 110225195 beta_agarase Carbon Cycling Carbon degradation Agar Alteromonas sp. E-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 95384.8649 49020.0101 195346.472 216124.7399 31177.2152 24022.7106 41161.567 59495.3379 29558.7891 57511.2735 49357.6194 38494.0691 1247310.4939 73349.5643 63939.4229 57570.0335 46224.9986 46224.9986 42785.5959 283273.8531 68303.3331 748583.1821 64971.1837 86962.1485 32675.2537 24884.9646 83977.2327 22829.5321 129453.3676 92680.0547 71164.2613 29123.5242 39686.1771 87430.1328 28407.2805 135188.0339 15788921 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 14468.0448 8032.2989 25745.636 23900.0884 7798.4063 10965.9875 24537.8227 6409.1212 10311.8507 17736.5898 12089.1841 341807.6702 15249.0542 88101.9068 15007.3402 10065.5884 10065.5884 9914.2672 21061.6181 18437.5627 22005.5406 17262.7884 31578.8413 10169.4519 19643.1587 24524.8223 9202.3631 33149.4102 17900.9934 17941.2759 14815.8288 14960.5291 12414.9729 9179.1665 16963.1222 219859378 rubisco Carbon Cycling Carbon fixation Calvin cycle Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 38961.636 24888.4077 13573.5409 31173.6917 30798.4015 11579.6525 179405.6164 24538.0988 25238.162 73277.0419 66360.8268 389033.8002 46755.1176 49390.5553 45833.3463 33158.3551 33158.3551 42346.6635 69836.061 34473.1681 61697.1146 66065.7256 43331.6389 44948.5003 19586.8318 56761.2359 33553.7432 217981.0084 40187.4258 180091.9028 31326.2469 112248.0043 46559.772 59800.3338 99263.0852 346421718 cymc Organic Remediation Aromatics Other aromatics Pseudomonas sp. 19-rlim superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 25311.9325 14992.6529 5124.3566 3071.3536 3390.4873 6119.0398 27753.2331 107749.2811 6238.6054 4899.8653 7733.1356 4611.295 4611.295 3404.9444 11844.8613 5673.5757 4960.7714 4602.0255 6039.4879 2825.6406 4009.658 5420.3453 13458.267 9583.1738 759444.1234 6647.1788 4088.1551 4807.0742 4837.7717 5237.9705 4839.6037 148501508 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7485.8209 9195.0587 6848.5769 62342.2926 3426.7065 2607.2264 3014.0181 6712.596 4035.7545 4645.8883 93416.5892 4622.6542 43186.2058 7720.4505 5323.02 5323.02 2681.7473 9070.3414 5550.6757 8609.9301 3167.5484 7427.0352 14923.5048 6810.9368 2427.0355 2833.7751 3170.4781 328856699 ara Carbon Cycling Carbon degradation Hemicellulose Melampsora larici-populina 98AG31 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 91612.6802 13832.027 168413.0333 68879.2224 141766.7079 20172.1734 66054.9037 71101.212 64122.057 68468.9964 113664.0749 47888.5561 2844920.6637 82101.8743 84476.3149 116529.1267 66352.6074 66352.6074 53667.1254 88252.0466 82801.7963 89974.5351 83750.6407 126067.6039 47876.8118 42164.5551 86067.0353 62160.1235 175403.3453 158566.3818 69277.4101 37387.3936 48527.8421 66147.7697 36896.2642 88688.8744 239519263 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 22257.8107 13293.4503 13304.4197 49573.1876 10314.8446 5077.8367 8072.6987 137363.8627 27797.5229 99988.7092 13247.8559 8877.3759 7282.9653 9132.0169 9132.0169 7341.6144 28419.3819 9351.8029 7302.1394 11828.1131 7055.5596 7447.8842 4553.6647 7666.1672 18127.322 41952.4198 12373.1734 9660.7606 3774.1592 7213.7163 7772.2305 13026.0567 5018.471 150273656 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 144398.179 33398.2117 15105.895 12582.5645 112161.2068 8483.6196 19936.8109 26686.1209 12410.6972 36344.5629 43578.1848 45383.9773 394055.761 33354.7358 33825.4595 29024.8153 26457.9038 26457.9038 30404.0539 55654.9774 25141.5698 66683.3731 109267.2688 39039.9383 44502.5181 28923.0999 53242.1941 35170.5597 75787.607 37562.5525 52527.1963 43824.0738 29149.358 35317.5853 16368.1457 48251.4921 118167430 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 10097.6151 265605.0256 7710.2197 16593.9492 4246.7392 238363.6192 4590.3976 48192.3468 34217.8704 37519.8196 488127.2741 10291.9984 11091.0392 6663.6322 12194.4748 12194.4748 8931.7406 16103.6816 11003.2064 9810.4889 33841.946 177114.673 7364.6589 5279.1244 15730.4581 5949.0866 50640.0645 29213.4264 44929.413 41390.1295 28693.7516 16149.7558 5638.4138 9355.0621 124266779 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 42478.7919 406274.5928 22399.6432 40029.8179 34592.1307 18419.338 23620.7642 20983.5855 17533.6173 15218.1292 20499.642 10999.0419 352696.5066 65127.101 22050.5231 18875.4042 20019.1975 20019.1975 15977.6417 36405.9273 26022.0768 28610.6056 30463.6085 393337.5334 18651.0894 14818.8811 33301.5958 15240.3762 48130.7628 19750.2916 32326.9026 13726.4567 18153.0414 304994.2672 18352.5468 34273.1186 5453191 nosz Nitrogen Denitrification NA Rhodobacter sphaeroides f. sp. denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 5719.041 2892.2413 2877.053 3859.6965 4454.0656 4102.9953 4102.9953 9320.1532 4370.1648 7788.5871 8250.9695 3383.8751 225671.4598 6910.7332 7132.7906 2837.3642 3768.6511 6815.5863 2842.8829 345873619 b_lactamase Virulence Antibiotic resistance Degradation Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 7318.9629 155791.9126 7069.1903 5884.2477 5973.2483 6064.692 10322.6974 6907.2038 54813.3967 11648.5475 130372.5186 10381.9746 7174.3457 11377.4156 4920.747 4920.747 4410.3654 11940.5794 21117.1669 4247.638 4266.5971 5602.2726 7619.2984 3165.9653 12501.8334 23814.9266 17969.4821 13223.0452 12817.1844 4399.5866 39191.2481 14533.8975 3795.2972 11236.1922 50542676 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4652.8649 4952.0971 6395.1976 7983.8285 6880.5574 5967.6667 3626.1848 6214.8807 19067.1088 93048.6114 7199.4097 3713.5068 27438.4125 3644.0473 3644.0473 3331.8294 11657.9234 5999.9088 6211.6345 5370.5229 3545.1694 5394.1589 7850.5529 2833.9899 13005.6859 3739.1367 9943.6363 3096.3073 4642.2911 5738.6409 3215.8949 7862.2364 4098454 nifh Nitrogen Nitrogen fixation NA Gluconacetobacter diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 10273.0635 28497.4803 7638.9376 6211.332 5028.0444 9655.8589 58474.4572 14815.0489 7813.4332 12214.8525 1131797.1107 22087.4129 7437.5367 5768.8105 11978.4243 11978.4243 3947.1322 16675.6656 9722.0126 6266.3118 9146.1316 15732.3995 5152.1567 13380.791 32159.2584 11368.2048 17322.3381 13438.8927 15375.9546 11209.3257 9887.9927 16496.6218 7188.3439 12015.8381 76166398 ppx Phosphorus Polyphosphate degradation NA Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 9162.4107 5594.5724 43712.2804 10235.1666 5185.1366 3933.7649 84429.0531 4826.0374 11498.4171 15323.4891 20985.4279 20985.4279 2712.7892 12282.4683 10759.3914 6879.411 10716.199 12003.6958 3271.1137 4427.3077 6908.7593 4690.4431 9872.7055 12872.7416 9078.0874 5804.7433 5532.3827 9760.8579 5385.1996 9768.6179 157377252 rd Organic Remediation Chlorinated solvents NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 7830.7577 4243.1951 9339.5202 3894.5789 7372.0277 2541.3535 3732.1274 8908.6272 4610.7429 10228.8111 5746.6884 4775.9427 7333.2528 6298.0004 2809.2189 3070.5211 9249.9359 2472.9029 14573.0702 5749.2459 7674.5709 3513.9165 5716.8114 4493.103 2974.474 9050.8388 49239781 PRI Carbon Cycling Carbon fixation Calvin cycle Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 87724.6731 29139.0773 22246.3168 55782.8181 37028.7318 18217.2267 20900.0174 32897.9781 15759.4782 19118.5203 14083.5701 561771.985 16963.6289 34183.1515 33981.808 32777.1051 32777.1051 10221.0655 33650.8768 30322.2149 224410.9082 35324.4978 72804.3041 19572.0876 16637.4279 51029.8517 12897.0222 139200.2976 103928.7672 30009.9609 15579.0582 28045.1069 21146.2558 12575.3283 37047.5176 296426325 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3751.162 14980.8465 4323.5107 3322.5844 6246.0707 14777.1913 9360.6065 3800.3125 2149.2505 3025.2275 297146695 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 35026.6199 45431.2597 23484.5213 57651.1339 110894.791 44510.6423 28540.2338 49987.7692 26188.9248 58834.3431 55119.675 47455.0287 805702.7183 245709.2556 73696.4575 132897.9706 126388.9318 126388.9318 53179.6701 28862.2673 30624.7622 48671.9872 49260.7643 28509.911 16035.6596 37205.4143 261806.9649 44224.8722 71646.4163 60227.1263 63355.2091 35482.4574 30724.5398 43939.1798 20987.1019 29095.2084 189199350 lactase_fungi Carbon Cycling Carbon degradation Lactose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 5851.4054 15456.6335 52659.0844 2590.5309 359312927 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 9687.0248 7076.6607 6980.0138 16827.1829 6057.0242 9364.4532 8311.5064 3419.9715 7432.757 6032.6553 7840.2146 285640.0348 9003.1603 9572.5065 7173.9341 6723.4155 6723.4155 4136.1806 13123.6373 8583.1583 34252.3393 23192.8493 5920.4707 3611.307 6054.5642 41428.2274 4489.2739 15997.5063 8813.9603 37715.9252 5950.7949 5731.8399 4907.0313 5147.1704 8091.7747 315411436 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 74869.1355 9927.0286 7393.5488 15625.1898 19177.5427 22425.5672 102763.6367 45104.6257 22081.0201 22447.5151 14757.7687 14558.246 18656.2806 25677.5077 82357.9754 21981.4349 21981.4349 10264.7577 35848.8322 42505.5241 17092.4948 268227.9779 7892.355 13147.6536 15313.4199 36355.8053 35851.9361 61027.222 33292.0524 27522.0044 11007.5469 15583.2958 39903.1585 194847.9894 27990.414 114799913 tfda Organic Remediation Aromatics Chlorinated aromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 36722.6451 40719.8081 35361.2313 20582.8251 15794.5152 31994.3034 22165.3546 19816.8445 31559.3056 48876.9856 16790.1493 802012.0712 36555.6993 38151.7468 37952.4647 18852.9515 18852.9515 24641.4317 48399.7335 31208.3532 33864.9195 39770.2861 61378.1099 20289.0046 15133.5276 35681.8601 18504.2832 50944.0631 24928.5774 37725.7223 17084.7339 20988.8647 36176.8574 22267.9058 47455.4455 76058309 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25155.5375 6732.4963 8358.1108 3370.8099 3370.8099 5057.1514 5737.8895 121495584 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5782.4211 10630.9942 6151.5716 186981.4864 7163.0266 2766.7828 6133.9705 4397.8621 7357.7424 3337.4294 4284.3094 7409.129 5254.8902 4233.8319 8421.3633 9660.2179 12332.0475 6588.0205 7873.3739 1839.5747 4341.5854 26913.9099 2840.1703 5104.6862 227328020 pme Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 9078.9908 6973.1592 8463.8566 2888.3633 79218.3355 2278.6278 2278.6278 6185.9748 1886.2037 320449373 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 68877.2337 962096.0313 247250.3903 8295.0498 6820.9776 13409.5155 200480.2465 5328.7478 15167.7727 6338.559 9891.979 9891.979 3948.6899 8444.0699 35163.5596 15901.5945 25170.4496 12606.9085 79836.9741 7105.3353 290339.7408 161052.2307 12477.9009 172931.581 6303.0267 4629.7344 4418.3724 6332.5709 228609.9354 40278.4504 7672267 hbh Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 24277.0286 20526.9231 39698.2114 17712.953 14591.662 13616.6631 12565.7949 12137.5575 14729.2289 25944.1473 20296.9995 334348.9432 55815.675 75866.8252 18770.7538 14150.4318 14150.4318 14448.7765 31685.8756 13951.2334 35370.5835 21124.3792 29981.5875 26218.816 15651.8945 29064.5988 11917.1942 34916.7981 20540.267 44672.6877 13449.2242 20036.233 22528.8682 8861.8548 28481.0679 328881936 amyA Carbon Cycling Carbon degradation Starch Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 37298.2151 56574.9061 70445.3094 22781.7593 47310.7179 22020.5619 35830.4035 43352.7325 361929.7284 29053.5572 42851.9995 20645.3232 710075.2737 61766.3076 36275.2582 55411.2452 43698.9601 43698.9601 22127.8233 40797.4144 28080.1745 27153.662 74429.472 31510.5405 15757.4031 19008.8388 45018.1467 21171.0168 71547.0748 46252.8064 44690.8876 27789.7609 33964.056 29771.4279 23481.9495 41873.4036 78093528 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46321.6866 221207.0139 6675.9544 4121.445 11274.7319 3658.9953 5704.9006 10106.0493 9821.9683 6532.6882 5735.4212 351011.1038 22253.6416 13666.7851 6755.7175 5934.6649 5934.6649 4361.6543 20059.1886 9539.0893 12258.3648 7585.0244 25436.5827 3402.7262 4208.2697 16132.7148 4934.6026 30975.3858 10304.1809 13011.4305 7876.3363 9485.5528 28456.2176 5341.0955 8505.4747 302555788 xylc Organic Remediation Aromatics BTEX and related aromatics Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 60029.58405 21245.701 98269.28275 61325.40395 36154.65055 51393.4925 47409.7261 30347.86575 32738.4976 51085.65415 38888.9948 1104467.85575 46832.70135 59912.7181 33399.61525 69102.3375 47207.5122 89641.66155 40064.1903 30914.03055 43104.4382 55931.1453 36922.0964 100692.38325 64737.14395 65420.6234 46354.02785 57423.0665 46774.2528 30934.243 383457684 chitinase Carbon Cycling Carbon degradation Chitin Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 37329.3908 10457.1276 11301.2367 7970.2247 51271.1486 15511.0434 16520.7985 17129.3235 24309.1985 22260.9667 24397.5969 30886.9404 344975.4181 24348.8445 36894.7688 31817.2585 23371.9749 23371.9749 12795.2012 31864.4977 16480.7954 22123.3245 28226.696 22552.8591 10175.0332 21180.651 51321.9997 49202.8777 60461.5363 23303.7941 33684.3802 10518.8606 27014.7725 28781.0564 16939.0665 21249.0652 84387642 urec Nitrogen Ammonification NA Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 6189.716 4363.1878 4573.6716 3606.8859 7366.6963 3463.0408 112462259 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44789.7948 45274.2336 14386.437 13973.8822 13053.9766 8810.1973 9782.1365 35870.1199 119739.3889 13560.3789 46271.5762 22066.6926 276888.1547 21608.1177 34246.3872 7010.8485 25694.6795 25694.6795 14510.0682 35684.2909 22589.8364 18248.5709 32897.9734 31414.0576 17626.5837 12496.914 24672.3995 96289.5237 58424.8143 16926.7901 32002.0933 24158.0397 18401.9588 161176.5265 17280.5031 38613.2129 325921572 cysI Sulfur Other NA Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 34083.28415 149524.3866 11609.6867 27446.02695 34549.65035 245192.921 44089.5621 21701.86705 30878.2328 9203.58535 32678.5498 729143.81045 69175.7133 19681.34395 19379.57755 42976.336 42976.336 9027.6233 23025.3472 27323.3109 15303.63965 18370.0506 21243.6181 14112.4512 8149.37915 52456.62165 27506.5469 30093.6072 17266.694 19535.7206 23014.3199 14595.0137 11095.062 12048.03885 15989.6378 325961837 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 4573.2182 17401.2343 11444.9237 63430.5322 5869.3535 6927.2686 4804.4026 6575.4862 3711.8507 71088.0123 3620.2522 6768.2501 4594.4198 3525.3979 3525.3979 13409.2078 4926.8127 5662.4936 14244.6739 9859.0895 2298.4561 3218.5159 11224.4829 2817.0182 15456.7007 7984.2673 6670.6829 3157.473 4464.7639 3892.5805 3140.5467 7506.2699 327394998 cysI Sulfur Other NA Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 14398.6668 12632.5818 18543.7244 23802.7138 10185.1609 10710.6654 6787.0569 10611.5901 13560.2177 13502.9912 220773.6754 16978.9383 13282.3376 8727.1427 6626.7691 6626.7691 10340.0525 24568.6167 15150.9094 15690.2787 17668.162 14527.8804 9081.784 8518.4325 24717.0944 8676.2857 26718.5379 14917.8813 19551.4036 8923.615 9720.1862 11889.1161 9671.8951 21488.4209 378733376 nagg Organic Remediation Aromatics Aromatic carboxylic acid Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 9338.2252 9900.419 6402.377 4781.728 4409.0177 5415.0972 8433.1055 10034.5897 2988.1645 118396.1152 6923.4383 8264.8919 9177.8322 10626.5702 10626.5702 3487.1448 14379.4096 5709.6833 11502.5367 13496.2868 12967.0735 3116.9398 3674.7196 6464.2442 14783.6309 20940.6354 12275.8543 11613.6556 5845.2215 6514.3441 14321.2413 5089.0285 13921.9797 302541866 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 363843.0044 13273.7568 21379.9754 43484.8828 42548.0036 13706.121 17258.9199 362597.0848 24556.8995 53457.9505 25391.7544 33031.1127 626063.6251 45995.8288 35649.2234 43012.6782 46924.1978 46924.1978 443589.1851 64005.6473 30801.8416 87938.6141 31024.9298 35492.8397 26573.5076 20525.7779 35262.6918 15792.0975 41755.0786 33101.7854 32937.4662 13332.8339 64423.2043 22383.4324 202377.8778 26529.727 340359044 glucoamylase Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 55571.2655 439983.6555 6465.0955 2470.8137 2470.8137 66322.7868 38314.0901 10429.9852 3903.6833 3682.6589 371575638 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium pseudotuberculosis 3/99-5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 11805.291 7946.6363 4383.2894 2912.9113 4676.6402 2160.0109 3789.148 9808.2539 3038.5392 183553.8262 7807.0175 7748.6929 7489.7319 3384.4452 3384.4452 7497.1439 9955.946 4910.1409 8907.0883 11674.717 8883.2179 2623.4901 3417.8847 7847.0847 2554.3545 11778.1621 10228.5274 8679.6739 2555.7986 5139.9035 6521.7333 4127.8896 10622.3646 76056999 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8526.3929 40921.3206 9525.1755 8755.6365 4572.6038 4549.8726 2472.9673 11740.0192 18596.8559 5332.5402 111287.2275 18002.5058 6878.2291 14911.9962 8652.7595 8652.7595 8308.4718 14561.4473 6787.1272 12084.0513 7833.686 8815.0549 4806.051 3908.3212 24905.3616 4436.5742 17941.6472 4804.1627 36894.1561 5864.2515 5554.6246 5980.3645 9596.2922 11741.069 254416328 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 14050.0487 73068.0076 19876.9742 10106.3141 6299.3062 7712.0399 39938.0414 9027.3022 12947.6722 20217.7766 278150.3213 17206.5054 16787.4428 13365.2221 8891.2991 8891.2991 9510.5212 139092.883 11579.9342 15545.3416 30668.5661 6609.8259 8672.8429 18287.3742 74470.6484 11693.2769 32838.187 26704.5994 19287.1013 5232.9218 19989.2594 11704.4239 8637.5313 12635.5077 297155974 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 8373.2434 9188.68 3034.3265 3167.8058 8742.9006 3260.8574 88848.2531 5572.3275 4397.2162 17498.3416 17498.3416 2774.2507 4673.4555 18790.4936 4059.1451 22281.7834 18015.9684 5664.5047 4794.3824 3714.0479 55553.4088 15490.5189 3302.9405 292676219 ppk Phosphorus Polyphosphate synthesis NA Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 64590.0518 20814.1632 30605.5134 36980.3305 6457.8729 15049.5898 33010.8508 21719.3936 106518.9963 56775.6683 26501.7075 581748.4151 36489.9571 33694.1391 130715.0659 27830.7079 27830.7079 48193.0253 55948.3252 25012.535 73058.3917 42412.8123 31311.5988 25728.8804 30531.4282 35157.9848 22072.9881 65695.665 34986.3683 48261.3514 32325.7166 33135.0999 39745.3703 14933.9294 62332.9621 392382575 amyA Carbon Cycling Carbon degradation Starch Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 75888.974 39725.0174 6897.0969 45468.7337 28354.1463 29285.4564 71748.2465 50137.5241 59140.832 38281.533 49249.7115 864547.8564 70325.4454 169813.1783 127393.002 46161.8589 46161.8589 29268.9052 81282.6677 74502.7474 50100.7597 126957.5439 41075.9553 64981.3412 52222.2798 103423.9591 39869.8187 174697.9392 55940.878 94134.7568 28478.6615 128377.3956 92609.4647 60423.416 79604.3173 206572846 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 14445.7283 12062.8252 5433.0587 6761.1008 13535.6563 8448.677 19889.5489 17281.4356 6452.5455 269327.4562 15834.8973 18676.0576 21082.7357 10515.8298 10515.8298 11791.468 24632.9606 12742.4316 11769.1579 21982.4032 16703.2975 7397.8297 7671.9119 20750.3577 8814.3026 28914.3363 14101.9268 19535.9495 5410.581 9064.3984 9876.4305 9142.8139 19769.8013 384102121 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 24597.2396 13329.7126 12218.3729 16093.9103 9299.0638 28363.3695 8393.8563 17294.329 19705.5627 17402.4267 241374.2827 22824.1581 27447.2438 32955.9956 12097.8757 12097.8757 13889.5413 24377.8636 9998.9767 41144.7474 168330.8615 9779.8729 12069.1483 13364.0888 21030.1769 34585.4835 29506.7066 33911.9194 26934.6519 8520.9042 35139.5937 22394.2486 17082.5509 18319.1888 78093540 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9808.6402 5552.6297 15976.1193 13707.3903 4033.3178 6506.7856 2618.3721 4135.1155 6448.627 4519.4645 2660.5977 2660.5977 7721.1376 8326.2329 35863.8029 5758.1105 4848.0649 3011.2851 3054.4385 8590.3785 3606.7859 9996.1067 7740.1351 5871.5787 6054.3455 8328.4861 3774.1307 4626.2515 422314227 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 99682.5157 5601.6583 2952.7656 3801.5141 3540.7889 9339.1406 8495.9206 3868.371 886334.452 8682.6149 7034.3107 7034.3107 6160.3922 10888.9581 6235.7747 5103.3633 6881.8777 8325.8026 6074.1694 6139.4558 8114.5538 8703.3234 16107.2588 5924.2231 8630.3413 4166.2096 9155.1413 8065.4476 39855.4363 9509.755 32527393 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 32423.3361 244044.632 6207.37 39895.1138 9687.1807 12298.1284 17960.2021 73089.0992 45057.7872 23949.7084 19194.7497 441813.8828 28393.8613 99845.346 19801.7835 34809.8819 34809.8819 35897.7584 35856.6202 19078.4988 50565.285 60854.1011 21697.5949 69236.2703 37238.7126 69464.7951 28821.3162 69843.953 52055.8403 49201.6963 14777.7344 40956.4208 188042.021 14904.1365 34569.2161 291583648 TIM Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 17545.6919 24952.0356 27262.8692 23369.1349 7093.1508 16297.274 53000.6225 21166.444 25760.6111 50290.9498 57436.1241 180845.0305 23070.5656 31865.0678 478711.6643 24669.2417 24669.2417 10688.674 30156.4398 29480.7371 25313.8591 18710.2917 21324.8803 17315.6055 28925.8311 36727.652 20103.9643 114941.3035 41994.4057 27211.531 19664.443 16808.3043 29117.1309 15759.186 22198.1379 311886900 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 23810.3352 20321.9175 19053.4768 50597.9569 32214.6454 18640.4465 107436.0133 23593.9258 24053.1459 23711.0322 13652.7763 513662.2628 24373.6874 37761.3119 42178.5556 26766.4714 26766.4714 17889.4472 70585.4855 28268.6398 28523.7145 28820.439 28645.3258 17661.3658 17533.7596 44249.3992 13640.3975 56365.4834 92135.2 37498.8528 12127.8213 21239.7459 18466.4217 31757.3271 31183.8598 197757814 pcpb Organic Remediation Herbicides related compound NA Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7008.4572 16380.4876 4817.9467 22986.0929 3272.9841 3073.1826 4909.9925 6839.6522 7593.0181 8807.7419 348780.2891 5352.4762 7938.43 8406.7066 8181.9625 8181.9625 4449.5197 9554.0767 15518.4285 112053.1122 5026.6011 12262.9745 3532.8452 5658.0921 12531.1043 3776.9562 37000.8979 7849.461 8428.9296 2950.0276 5044.3573 13051.7133 2314.0571 12398.7738 163747024 TIM Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 6670.7957 8991.3239 21216.1642 11480.7086 8163.6175 4765.403 6741.2047 3724.8801 101804.3479 7414.3926 6942.6637 18525.1704 4197.3413 4197.3413 5404.8201 11432.8793 7119.9535 6575.4174 7495.0842 6838.068 5250.5492 9144.2427 8875.615 14198.8531 13423.4032 11982.1094 11357.2725 8039.1701 6267.3752 7873.2854 4658.0821 28700.6799 116668784 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 13961.9265 44823.9703 8518.6383 8172.1308 5779.6706 4264.8613 17476.3539 10082.6101 20145.6455 189175.0422 550375.4123 12373.7167 14639.9855 5243.6806 5243.6806 4270.7006 22033.7672 23417.2528 915934.2515 21641.475 17106.8241 7325.5607 7302.6326 14985.563 5341.8295 23020.1567 18683.6359 15224.0369 5194.8014 15195.0989 8994.8395 7786.1041 18362.8774 256675909 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 12388.9404 7318.5215 11816.9578 12080.5418 7503.0558 4400.4045 6895.2608 7440.1639 26371.1695 136710.4305 10022.9603 6035.2169 3964.2768 3964.2768 5960.3256 17853.36 26916.7682 12662.7228 16373.211 19892.0568 4825.2867 6042.6181 11566.3984 5126.056 20322.1132 11686.4204 12916.2348 6831.3862 6140.5734 8323.8302 6972.4915 16700.1351 357560634 pula Carbon Cycling Carbon degradation Starch Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 7287.2366 2735.8491 10058.5095 6324.767 5555.5152 4703.7545 144521.2428 4356.1392 6727.2183 2219.4573 2219.4573 10386.2201 8028.8726 5558.5075 5658.2323 4248.6253 3459.6971 3666.1085 6871.2099 9381.0002 62279.167 5808.531 7318.1965 4459.7163 3795.1837 6038.9928 3577.8108 7585.9261 192360166 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 5537.8481 12767.4667 11609.7391 4208.63 2974.405 5804.1794 4323.4387 85109.2919 64691.483 4089.2954 4023.9941 4023.9941 2493.1803 27725.4638 9729.5769 4804.4864 2187.255 5254.2786 5605.7782 6259.6581 35240.979 3687.4665 8956.6354 2102.9136 3726.0149 11315.3618 2771.0845 217497270 cysI Sulfur Other NA Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 28331.563 31455.1461 11244.7299 11501.7459 1225706.9516 150425.8398 116323.4312 12062.3758 9384.2062 15276.5882 9783.9013 246547.8535 11261.1094 14875.7211 12744.6496 8457.4275 8457.4275 6757.7251 16366.3107 9461.3507 45286.1647 27626.6153 51164.5231 15676.0459 6488.7287 41897.0205 24817.9253 38454.3729 8869.7091 26107.9081 21669.0367 11962.071 17066.716 16331.6983 14785.4911 260644352 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 19748.2836 13479.6718 10372.6057 12376.8731 2427.0667 29659.7894 36914.5941 35329.3641 13504.5911 18243.6038 158325.0889 14568.0853 22913.2244 26740.9486 36676.7641 36676.7641 9795.1609 28570.734 15722.5359 23675.1888 36837.8708 35681.7842 11240.3889 19335.4978 35810.877 14406.5847 32923.6131 36237.0115 34554.8155 7369.4486 12035.1887 31784.5726 10810.2668 13011.3093 113912333 xylanase Carbon Cycling Carbon degradation Hemicellulose Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 5671.0729 25750.8102 2046.1581 3578.4454 2115.7528 4365.5587 4537.9295 2933.248 117037.872 4405.3654 4289.8514 4778.8852 5458.3407 6605.6795 6572.6607 4378.0171 7811.9337 9732.5626 3308.318 8430.1865 3144.237 8965.7103 10339.4778 9174.6268 3725.3353 2844.2439 5076.9157 3827.4274 6209.1544 78166891 sqr Sulfur Sulfide Oxidation NA Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 17162.6392 12823.7335 17032.5067 11367.5102 12327.9028 8480.3548 9178.865 6088.8715 8035.7922 63285.0601 29317.5045 1786447.2462 18619.5327 27090.0566 25267.916 36593.1565 36593.1565 20013.7543 35606.6464 19600.4032 15066.2486 28811.6398 38711.8045 16937.5826 16283.8756 14008.5781 17433.8228 42335.4047 35662.8697 38826.291 26857.5107 17363.3488 37147.1428 21250.8944 28061.8198 320527927 amyA Carbon Cycling Carbon degradation Starch Solobacterium moorei F0204 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Solobacterium;species:Solobacterium moorei; 50692.9926 18649.607 37750.4721 42317.2018 51474.3917 7990.9917 40924.5877 32854.6775 66666.9305 39140.481 45548.6861 34432.973 1629439.7983 54346.8052 54782.8916 38847.6874 25039.8469 25039.8469 38224.0442 54965.0644 42368.3288 57728.6785 58450.4792 72059.1984 24875.5883 22310.0424 48765.6115 23592.0306 83442.9416 22317.1418 64282.1624 28442.5931 26379.8407 46393.0611 26018.069 64509.9206 115520664 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13373.6184 139725.2716 10050.7632 16163.6408 7045.7588 21244.6218 51099.7043 6001.4355 8427.0018 14654.0991 27531.8309 550143.5504 7617.106 18309.7148 13850.6592 69746.3104 69746.3104 138134.5887 19348.1903 16353.4571 7096.9821 41796.8414 8622.2887 4335.1467 12426.4289 24395.1125 7560.279 24564.7846 44072.3252 249544.2266 7460.8386 18262.0161 28878.849 3999.4537 12896.7356 333996188 xylc Organic Remediation Aromatics BTEX and related aromatics Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 8591.8666 186470462 cysJ Sulfur Reduction NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 13341.4196 8839.9666 7212.0201 9468.824 5621.3508 4447.6914 19116.0429 4288.0374 7213.338 18143.1362 7172.6378 15782.0723 4062.4705 2958.9796 2958.9796 11956.8258 8097.8906 4739.5801 4317.5639 13458.1238 2658.5306 3526.397 8908.3031 3285.0324 20032.5698 9520.4873 8741.771 3371.5616 8353.5499 4104.5954 4089.9966 393703354 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 5722.228 9686.3743 4334.4183 13141.4443 3381.2243 4707.2044 7729.1608 5111.7396 98314.7678 6299.7438 11508.6683 2909.0565 2909.0565 4886.5895 11191.4799 8734.3723 6770.4725 8548.4269 10361.6616 4447.3577 5027.7547 10230.012 6356.1678 27915.0799 11706.3068 11032.0493 5479.097 7779.5918 6940.7803 6873.1103 10755.4391 161379828 SoxC Sulfur Sulfur Oxidation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 10533.1937 7399.3517 8069.4452 7449.1506 7028.0044 6507.4407 5293.9555 56492.5463 15240.2441 12626.2752 227204.4892 14986.5964 108977.9033 102164.9759 10775.1011 10775.1011 10799.0106 23275.0797 11748.9454 13063.2619 10806.911 11309.051 66490.5018 7024.5549 13632.9524 6081.4702 34634.5993 11160.0302 16333.8195 7970.1139 10998.2204 40065.5512 7815.2361 19043.6238 296446581 PRI Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 7149.4001 13236.8708 8208.5085 3826.1609 3727.6028 6865.222 12207.8656 152054.882 14166.5551 4499.2437 5186.4327 4056.994 4056.994 8988.5824 5508.0725 11715.6656 5731.8697 2765.491 8242.1298 2660.8889 18680.4445 12095.6158 8194.7592 3123.5273 4753.2437 3366.1388 5630.4848 46308014 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9410.0379 9035.9489 8531.1476 8944.2639 5644.0754 3231.8107 4796.2163 4896.441 4316.2466 151212.6125 4718.6856 4768.6631 23786.6181 3372.0225 3372.0225 7308.9587 12766.437 8692.042 6215.6247 8492.7721 11423.4648 4582.8339 4733.6014 9285.6771 6211.9821 15971.1526 6219.0518 11563.0139 3955.6309 7104.7316 5062.0727 6893.8382 12784.5254 139478539 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 6035.0564 343992.6768 4275.9643 24406.4022 8025.733 1973.8183 4342.6958 3024.8679 7790.3078 4043.9863 118762.6764 5341.1586 6472.3283 4465.88 3007.2638 3007.2638 7393.6403 6433.547 3256.6324 6243.7669 3441.1839 6578.9712 5027.2673 17329.6802 7681.3934 12508.0612 4279.5444 4758.7021 3063.0638 2432.087 11891.8692 323359198 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 8635.4709 4161.106 14512.2175 8121.2748 2104.9286 11179.8504 9174.7713 133335.1573 6311.808 23097.6892 7675.3221 5456.827 5456.827 6107.0117 12995.1913 5121.6508 26444.9484 4705.3567 7984.7447 3089.8781 11875.2753 12938.3353 5208.1961 8264.4328 14511.2818 24320.584 3546.8636 3596.1439 5843.4534 6620.4377 7346.4425 377658619 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 12293.1037 13836.1581 5245.3249 4663.5452 3317.9826 5089.8802 5083.8046 4357.8617 5295.639 122852.6128 9794.4872 4057.0611 5675.7546 2318.1965 2318.1965 20185.4916 39380.0691 16620.7978 5237.3602 29977.1218 7130.5652 3619.9001 3601.1479 7713.1728 4207.4846 16512.3647 11350.762 123706.323 8173.4171 4992.7751 10351.0403 5041.7516 13861.5951 334888856 pgk Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 174316.6689 21548.5917 49785.5505 64896.0208 7693.639 19721.0814 25249.1174 15993.6664 16470.9813 15281.469 26853.8706 543861.1637 29037.7933 29529.094 33740.0257 54947.5734 54947.5734 11272.6661 65970.5912 24680.3698 20180.8418 72221.3454 186861.4461 21438.1664 30929.4453 31724.5904 13486.8546 66567.7108 50215.8194 33491.0174 10657.731 32154.1743 35952.9518 21017.8168 41909.7416 260423708 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 68590.0489 45042.4811 218318.3228 15557.4732 31723.7593 110877.1638 36327.2447 43474.7671 53413.3591 48814.5227 1271617.9866 20169.1653 44151.8982 115284.1256 67783.3859 67783.3859 51851.3037 86333.8249 57986.9286 55647.6025 114712.9884 57327.483 42079.9144 86429.6828 36257.2864 94874.8032 110725.9569 84196.0161 77390.9851 28846.8795 66177.8625 101174.8025 32891.7171 92504.957 330467676 chitinase Carbon Cycling Carbon degradation Chitin Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 16982.1682 10669.4797 19819.639 38729.9468 134149.186 11228.0754 5344.8449 18514.162 13810.5532 14982.2769 213722.0482 29070.6834 12798.6521 8087.4386 9170.3911 9170.3911 6656.1706 24730.8847 21465.8058 13804.1665 12475.227 8003.1304 7646.2069 9756.3593 15960.3221 9939.4913 31664.2489 16386.0802 23896.3064 11561.1142 12232.6047 13465.089 9157.8457 16152.2992 86555596 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9881.2646 5074.7476 4407.6005 2500.952 4695.6538 2816.6231 6828.6736 9413.47 8228.4862 97760.9463 6200.373 6880.7197 8256.979 3945.1183 3945.1183 3865.1306 7955.5388 4063.1098 7213.9158 9743.6655 5987.1269 4237.3595 5039.824 9251.0043 3132.1837 12410.4785 21251.5209 7490.729 3321.3135 5328.9421 4994.237 2802.8532 4372.5755 268162373 endochitinase Carbon Cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 10263.4722 20714.6169 8278.8199 10756.0664 4458.253 8160.4078 5679.7833 8505.9474 6146.4401 11435.8908 4541.4183 275118.0404 299082.0634 15235.5314 10417.1515 5679.5702 5679.5702 5844.8491 17079.6893 8073.9028 10355.181 12992.5969 14093.0117 9186.2858 7771.7 37652.1899 8426.7494 22040.3384 12089.9468 18064.2904 7383.4943 13094.9888 8568.7565 5344.559 15024.5286 269786597 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 35567.2428 15597.7002 3987.73 4809.0381 2354.9094 7606.024 16576.5542 4185.3444 60662.3068 14154.826 13022.2427 9392.0191 20802.7572 20802.7572 50113.9676 5506.6199 5157.1776 7654.5768 22425.6463 5453.7789 7241.1035 16951.8841 16266.0214 14372.7678 9526.165 2801.1795 14111.6899 6706.2894 4522.9635 9564.9867 283808369 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 9781.3603 52569.5326 15958.6855 9754.6759 11757.9607 9761.8505 8924.6782 15757.5763 9820.6746 156971.0048 31632.9131 24248.8229 61237.1974 10400.4331 10400.4331 10273.4484 111911.784 9346.822 12433.1355 23552.3783 10173.6057 5931.6114 10852.4203 31784.5318 44020.9847 35402.6833 13064.5936 28253.5633 6106.5475 17409.0424 12449.9517 10267.3858 23612.5032 212672317 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 9108.6411 5895.6572 3289.1202 4094.4993 2481.1648 2481.1648 5754.3384 2362.3501 3209.6887 4291.2992 50769.2477 110180265 cysJ Sulfur Reduction NA Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 132664.698 70700.1639 289317.7504 125780.9071 23680.0311 80036.522 131649.3269 67171.5399 40562.4728 87089.9089 68157.4441 1030420.1928 433002.4903 104046.3229 230700.1942 105500.5017 105500.5017 67752.1981 324235.0182 32081.2616 105175.5873 110986.5093 285899.3594 136310.7158 82634.5818 73946.1138 72400.2469 313198.8185 98839.3596 106400.6336 52692.2964 214595.0764 61274.5191 78411.1034 31282.7601 282950380 amyA Carbon Cycling Carbon degradation Starch Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 25884.5636 44898.3364 8248.4734 18419.7251 14749.035 20681.2195 6989.1831 30428.4825 53956.8699 26397.1545 413826.6779 28017.7139 32002.2018 19498.9643 21107.5189 21107.5189 15866.7211 49097.8685 25109.2505 46048.2069 24136.8562 17317.633 20975.9803 23539.1313 17089.7063 24932.7174 142373.9328 7060.7902 22412.9734 13100.8127 22079.7248 22416.444 25521.7189 77370.6814 90569444 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10773.7011 6694.1205 7156.8986 7698.3991 8185.9483 4370.3266 4016.2688 9282.6036 8872.0716 3915.1833 212633.3447 8696.7139 8668.0797 5259.5195 2805.1872 2805.1872 4390.8421 13554.1045 6348.5801 9976.5063 6916.8359 6404.7905 5325.0503 4849.3187 10947.4537 3789.0449 16050.357 9708.0831 5345.6845 5993.361 8195.5343 5084.6558 13073.8583 162146115 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 16869.1612 11898.4583 13529.1122 15707.7065 3993.1052 10564.9946 10072.9065 11869.4818 13412.3926 6520.1224 408687.9341 6602.5084 10885.0153 19812.5738 12001.9968 12001.9968 7208.2615 17086.7884 12105.1899 9968.4875 18395.3945 26535.2639 6522.1136 5751.1699 13279.2191 5715.2989 20418.1411 13035.8763 10091.2722 3610.8714 11502.3231 8933.9646 5485.8509 12326.8217 282948934 narg Nitrogen Denitrification NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7046.2213 8505.7487 11137.2558 4514.92 2825.5735 4660.2989 5965.2315 74750.2081 4911.198 6171.9623 6971.5415 8072.0947 8072.0947 4332.4809 10797.3192 6261.9525 11683.6838 8233.655 4190.0758 7890.7539 3674.0364 7391.3521 5908.0351 14901.7817 19908.2275 12979.498 2685.5337 13682.6497 5850.7331 5275.2767 5090.2576 227548972 urec Nitrogen Ammonification NA Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 4188.8613 17926.9006 9480.785 2622.6545 3174.6812 8663.6056 8137548.7571 9094.4027 5142.43 4121.5054 4121.5054 57279.7543 29455.0287 35959.1163 6023.7706 2026.7339 8211.6451 9136.8732 381398867 poba Organic Remediation Aromatics Aromatic carboxylic acid Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 4750.7551 52398.8093 4799.4631 53950.0749 3635.497 5579.5396 6277.1373 4224.3067 5107.9454 5517.7063 6219.154 6219.154 3515.7576 6907.2166 4096.2254 6177.5899 6518.68 4307.2787 4106.4482 6380.9886 6279.8856 12744.1704 10248.916 9500.0778 4429.216 4760.7174 7136.7751 13466.9935 85813892 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces rimosus subsp. paromomycinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces rimosus; 7331.1175 4174.4244 30403.7442 2405.2202 126165.7573 5916.6317 10760.0571 10760.0571 3297.9441 3444.1433 4322.2399 15370.4676 2551.9225 4720.7468 15119.5359 7054.8022 8047.8076 3360.7317 16477.21 227350570 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 44657.4617 63706.081 44145.7819 9674.0302 150326.5393 56021.6774 76547.0243 71429.8682 80843.7383 48132.9754 28066.4259 41850.2486 529852.5012 49942.8584 64639.1705 37205.1449 48205.0332 48205.0332 21860.4037 34734.9248 52704.3618 27000.1511 38208.6086 61639.0231 67046.3037 26773.5225 56947.858 29926.6658 86775.9204 54502.1567 73907.6677 24964.9357 125983.6446 47981.6381 26310.9712 23396.6836 89952081 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 229387.5675 12888.8023 14486.7586 10917.4002 18928.112 10178.7925 21329.0435 245066.2981 7456.1512 15368.3677 20180.355 18975.9436 469565.0796 24484.1669 22176.8641 16526.8146 36073.2509 36073.2509 366696.0987 48561.4473 16044.0256 93931.0248 16396.6756 24626.9956 19610.2528 9766.6873 17849.2883 7493.1721 38520.2927 24431.9992 20881.8657 8050.4204 54740.3246 12137.4749 150421.4854 20510.4093 331696225 arsc Metal Homeostasis Arsenic Detoxification Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 26070.21 23963.0586 13674.3212 16575.9783 21789.105 4771.9464 12071.3771 9065.8477 35115.3862 17384.3214 13616.2907 21548.7728 777119.6887 33297.4524 19866.4632 23792.7685 11862.4569 11862.4569 14098.8957 29613.4129 10264.0859 11324.0589 104000.7086 44007.4262 12536.8406 14022.3573 31295.4795 13623.5908 94806.5362 9853.7104 41607.5601 25657.4291 26169.5072 30976.4523 10112.4089 93918.5911 240279545 amyA Carbon Cycling Carbon degradation Starch Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 18060.4983 7464.4492 13673.2628 9328.1554 12981.4465 13619.6911 6368.3605 11715.8841 14733.2509 8744.257 445090.9121 18520.8185 13765.7394 7766.3986 11589.6749 11589.6749 26116.5702 22059.795 15802.1711 36549.0816 48554.6078 27198.0486 10734.5977 9534.543 15857.5524 7307.4076 28357.9018 18952.3362 20965.8121 8917.0193 15655.4669 11654.5651 8965.2872 22595.3153 330466945 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 109276.4548 21934.2633 28084.6107 23669.3538 49434.1312 8479.1216 23215.7572 133762.033 100700.0637 233020.7408 54965.2753 53993.104 1060636.4926 46805.3658 51688.4233 49138.7017 33253.5084 33253.5084 30125.3751 74141.9192 33064.6893 85795.7504 96249.8659 87761.4378 24775.2783 25245.2955 65672.9189 36304.8297 98546.2635 686416.8421 94047.671 34105.6753 35932.1902 52537.4002 44519.0917 83148.9781 260418250 cellobiase Carbon Cycling Carbon degradation Cellulose Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 15128.0185 9951.5585 6175.3679 8696.6134 14186.2475 8659.4467 4811.0876 8891.5571 58669.4758 14544.2943 40884.5151 224251.4731 10001.677 40921.8437 26776.0985 9448.6155 9448.6155 10692.129 101916.3668 14189.0972 6234.0435 17749.895 8977.1658 83063.372 20377.1714 29210.1942 10717.1404 56768.4456 21354.4988 19868.1507 4580.1107 15331.6138 13950.4555 11591.3377 19877.5433 366984355 amyA Carbon Cycling Carbon degradation Starch Oenococcus kitaharae DSM 17330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus kitaharae; 20187.6505 24897.4418 319783981 exaa(moxf) Organic Remediation Chlorinated solvents NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 8179.3724 8245.0339 15596.682 9505.0409 19076.9676 3718.2758 4327.5668 4538.3777 6680.9489 3872.9354 88353.4738 8123.2199 9180.2698 2432.0151 2432.0151 3740.7619 11182.4226 6238.7546 7144.5808 6158.5683 6656.8405 3607.5298 3506.7558 8077.5475 4287.8688 15387.0627 7643.2208 9969.6396 3638.8168 4735.7331 4833.1655 6030.8074 7907.6337 148835307 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 79720.1417 19030.5437 13889.8887 15790.0314 28806.0733 26134.7391 17374.9647 18823.4477 98028.9728 42165.0308 223019.0617 21441.295 25757.6219 10083.1872 12656.1332 12656.1332 12745.9377 27655.7356 16161.3722 22036.1373 42169.4527 25660.3105 14851.0856 13828.0437 32691.8339 15841.4105 46217.9362 28907.4639 24349.194 21325.4549 18521.552 16963.8985 12834.1625 28667.3451 148474814 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 65778.6954 126215.7167 64108.9316 54937.6364 38711.315 13210.6549 137384.189 66171.0129 73439.6894 47272.7028 89170.0652 40478.0133 1429664.5299 64635.3623 75414.4686 110833.9042 52668.1789 52668.1789 42642.8125 86000.7273 62767.4934 146420.5961 88518.8768 126887.3211 47398.8416 106898.2197 77750.6714 78771.8431 166234.1825 79392.5093 84029.2139 48809.2131 69449.1913 65972.3321 45046.327 107498.3953 356960185 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium SCGC AAA001-B15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4213.4016 6891.9813 3390.0966 4516.2303 4022.6564 4223.8401 2320.2773 57484.7907 7409.126 3766.5695 3580.7796 7127.3509 6072.6296 3795.1922 5491.2949 7427.1798 2588.1263 2610.2967 8363.6955 2938.2985 8354.8865 6915.7878 7979.811 2727.0472 4570.8613 4706.6062 2626.6508 10258.4888 85823339 dmdA Sulfur DMSP degradation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 36584.0307 92720.3381 4309.8695 3093.078 3689.7139 105388.6013 5248.3575 93727.9789 4264.7377 30813.1816 91696628 mer Metal Homeostasis Mercury Detoxification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 30031.3448 18718.4287 39438.7878 17907.6511 20703.6056 9033.7057 278114.8524 11926.0703 9661.3572 27586.3239 25746.8306 23396.7063 515417.1048 21949.0724 81010.8088 20257.0654 19613.1649 19613.1649 15720.5295 39154.3696 20737.2986 35610.6252 82243.7957 30544.3692 11831.5238 31892.9123 23375.9901 50816.6892 56318.4721 51437.6148 52159.1556 26331.2384 27034.738 26948.4329 11671.3564 40644.3637 239991741 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 236566.9035 23425.0813 352104.2812 176533.6676 528411.9871 230748.878 222434.1284 120906.6302 157497.9065 82439.3228 214899.2143 158675.9187 2680104.2663 168791.798 485707.2056 254009.0446 203484.687 203484.687 137495.4923 134603.1273 87380.435 144814.2901 364987.1611 290724.4992 92564.0624 104627.6879 245371.8387 98776.858 198898.4769 143544.6805 158233.4321 118650.5414 117481.653 146061.6473 72110.7858 212323.6774 381202978 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 47427.0088 11077.3424 35914.2278 36196.694 14825.1461 10543.469 17703.8671 10773.3659 17359.8171 25359.3517 22349.9844 1994180.1616 43020.868 29037.3342 29537.1309 24571.107 24571.107 18614.7494 74922.8517 19801.0744 18192.3268 39898.5253 13238.5201 16567.861 29507.8877 25042.9368 17332.9076 47303.3409 25957.2711 31124.6635 13064.7852 47928.3857 22821.6445 12741.8405 19764.7919 311279053 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 31861.9133 14434.4739 21886.3897 63350.7985 67558.1414 12137.6527 56559.7244 16851.9583 33224.1582 122067.6766 71065.6825 1206893.4042 53957.2106 54032.3182 131878.5042 45504.1324 45504.1324 23593.8186 58903.243 41212.2531 30913.0164 57777.396 23038.0021 25399.4971 33809.5809 70978.7028 15349.5453 94479.414 77564.5281 81004.6763 27422.562 36588.7236 49567.6367 16033.6138 29179.1862 383790215 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 4861.8265 100188.0255 7504.379 14461.7172 5176.801 3041.67 14259.6399 4943.0146 152247.4867 10921.4726 5993.6751 13804.8372 6087.9306 6087.9306 2665.2166 12969.9807 3513.5765 15486.706 5796.3654 6725.1638 5639.448 3949.9252 12296.9023 12067.0663 8959.4894 2627.2032 8665.0827 10570.3588 14708.7238 4656.7676 219849374 fumarase_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 92741.1372 20007.1339 27653.1969 27294.1405 25940.5055 10609.3189 25641.8486 16096.6853 44726.063 204892.2101 49810.836 24996.8339 718132.3293 40240.1496 37611.12 30578.6715 22621.3789 22621.3789 85568.3756 52556.068 24706.7321 36421.9375 30646.1842 58436.4811 22347.1341 19962.179 92435.4362 20550.2997 84932.9759 48907.8848 46695.5022 60710.2353 26528.8534 41917.773 26350.4023 336964.2727 211957439 ppx Phosphorus Polyphosphate degradation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 9946.054 2316.102 3510.1168 29182.3562 11963.298 5026.1438 8137.4821 2181.482 2181.482 7724.2722 2578.4694 3986.1199 3043.1595 4875.9302 26257.9748 3820.305 5730.54 2330.3739 217980017 amyA Carbon Cycling Carbon degradation Starch Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9252.7267 8894.8818 32158.4293 22246.9489 2805.3314 4480.9653 3705.4322 96750.7462 5939.8562 5382.7964 10434.0409 6720.007 6720.007 6694.9266 18338.7201 4710.2821 11021.8809 3177.2802 8960.9196 10725.1434 9810.5902 7650.144 54120.0495 4548.0747 3269.6822 13414.6916 359820909 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 13652.505 12833.5716 8881.7911 10776.586 10415.2487 10098.6106 8014.7139 7323.2369 11115.5398 10151.3039 5090.8321 319104.2918 13173.3023 11166.7861 8109.5431 4991.0808 4991.0808 9233.017 14205.736 12363.8659 13093.1595 16773.2085 21845.5152 6216.6471 7035.5307 7487.6493 5898.7701 19205.0127 17957.0487 16572.256 6945.2134 8138.4599 9542.13 7058.8408 23922.4835 256833467 arsc Metal Homeostasis Arsenic Detoxification Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 19614.0344 12272.8579 17870.8295 20660.6649 8806.0466 10378.5243 50032.4516 14185.2047 18657.5294 8851.3222 459139.2374 23383.8018 17405.188 15438.1815 20269.4088 20269.4088 15364.8004 25233.8979 17861.5249 22144.5383 22802.3675 22446.5534 11696.1591 9772.3121 25632.8062 6805.4582 36165.2482 22289.7882 32641.5543 8836.1571 13597.1349 14189.9649 9821.0935 28276.1419 46121363 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 11486.7621 182267.9816 5835.9815 12163.983 13930.8665 12992.5706 11722.4674 8308.7543 9120.8952 38897.8502 14496.4479 491506.1196 15509.0551 25426.9271 8654.7686 10765.764 10765.764 9612.0904 23138.3531 12953.2916 19519.2062 35263.7269 21304.2753 10097.3131 7948.8784 16186.7568 25641.2657 73193.0608 11508.9983 20203.5766 20959.9298 13809.5789 15096.3846 23851.0836 20023.5884 209486940 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29792.4783 24018.3483 20845.6918 33290.1797 14313.6291 16557.1351 43029.7412 10721.8773 20102.8305 30288.0861 28948.9719 528737.7621 26928.9823 65293.3666 37564.2312 24499.5286 24499.5286 12541.6695 35986.4411 33095.4993 21070.3285 29930.3787 24497.9985 15620.8344 13841.0142 36138.5843 16268.6213 64250.79 36226.7385 87887.9818 13978.6185 21105.5798 17261.3498 14323.6302 28443.1677 389867090 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 1022976.4133 32157.4428 305180.4875 148299.1694 64475.8815 49054.9699 142304.4663 524265.6125 113343.3129 149459.4368 224496.4012 233570.0284 3713439.8557 142304.6519 207668.0831 228719.6777 178681.2818 178681.2818 110325.9522 147548.1652 108020.8069 226078.2138 202595.3483 185812.6618 94398.9293 133265.2707 199509.9791 190510.9675 283583.3206 134342.3379 155635.4904 159037.8624 230817.0111 115085.3618 103787.3141 705792.7196 254266629 SoxV Sulfur Sulfur Oxidation NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 13492.6497 7425.7135 5449.727 26816.7191 11367.8859 11852.2461 4754.6423 12409.5969 15765.3618 4672.4988 514410.9286 25703.1521 14412.3653 10284.3615 7467.3036 7467.3036 12059.1708 31877.8742 16297.4084 31464.0435 21112.3535 28714.2553 8761.2056 8067.9229 22145.3267 6955.0995 25844.0969 18610.0557 26058.746 7331.8298 10579.6132 12982.6052 5885.375 24514.3047 27376604 tfda Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 3762.2363 14410.9244 4504.5522 7092.2692 165396.5135 3689.6137 7330.609 15684.898 15684.898 7171.5879 4961.9342 6597.1617 12112.981 2662.6715 5842.9455 5552.8066 12849.2823 6178.7125 2088.0149 2565.9632 3021.8368 5039.2002 323455968 actin_Stramenopiles Other Phylogenetic NA Aureococcus anophagefferens superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 35008.5213 7034.103 14244.2096 8490.3725 4678.2558 5854.02 5104.3075 15381.2311 5083.9344 76933.963 19064.1227 5147.5555 5831.04 3810.1299 3810.1299 4529.4492 17474.9753 6731.7371 6413.1225 9539.2581 9594.4944 5171.3264 4898.321 17123.0671 7926.5625 18502.7301 7845.6133 9831.4898 4101.3427 5949.6466 4653.0832 5058.5073 22684.1964 169634931 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter baumannii SDF superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 4776.2948 2347.9582 4969.4654 6516.9067 2626.7522 2626.7522 4912.934 6176.2343 3606.5951 5124.5646 2799.0066 9343.2217 45386169 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 9116.0205 4008.1633 20769.8937 9466.6953 10798.366 5509.1761 7141.6922 128739.5753 3766.8036 7173.8312 8810.5807 11993.101 11993.101 2914.8049 11187.5602 8746.3801 9131.4621 11225.4703 12146.9891 13625.0406 8192.1407 13682.8208 7227.9227 13200.2832 24410.0133 13104.6694 1870.5744 10376.5919 6840.6405 3722.0886 8899.247 164455538 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 242296.2224 75916.2403 596765.2414 148317.2721 178620.259 175193.592 563975.631 134720.5095 140114.3393 280246.0131 261292.0501 242674.0862 3467395.1602 301378.6262 473356.0623 601674.0537 192275.2209 192275.2209 173269.096 191291.0407 138028.0906 280004.0488 373509.1366 266927.4308 182582.8625 201151.6414 178219.0404 127559.6115 538052.3425 227465.5834 281260.8539 101049.0582 158581.2621 170106.0123 106751.5211 547686.8198 365855756 TIM Carbon Cycling Carbon fixation Calvin cycle Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 12328.9211 4448.6243 3768.2697 3247.3519 6648.6737 6208.1738 70139.5919 471726.8552 3545.2519 3506.6499 3506.6499 9272.0404 4543.8985 13941.3484 7608.206 2231.4113 8339.8604 8544.0309 11425.5687 25541.1353 6540.2629 4088.9985 3014.6567 14399.6056 21673378 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 4349.864 7962.0421 4628.3959 3745.7807 6153.5074 9071.2176 674939.5139 3873.9918 5116.937 5867.448 34699.2134 9283.6077 9455.0162 7440.1351 5981.4145 8151.7954 3742.313 3374.6239 4678.8928 60475948 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 36570.8972 15191.1941 11476.1585 21740.4572 12396.4221 22335.2588 195925.9195 48371.0364 26242.6802 47397.5716 4925233.2358 52592.7926 29217.653 31672.7562 38615.556 38615.556 44597.1792 63721.3557 25601.9437 65075.9225 67111.7632 31391.1287 22034.3708 31064.2954 35247.4026 38333.6682 124538.5755 125419.0545 37277.4886 23522.5789 31769.7145 60293.2702 119824.9754 32313.7406 15889672 urec Nitrogen Ammonification NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 69834.4097 72421.7278 40150.5165 52480.9112 107105.0607 29608.7853 44417.5879 37091.2694 37483.4594 87476.0569 48488.4484 61975.077 1436923.6028 64607.7948 203751.8375 83781.6001 30906.4202 30906.4202 109158.4089 66923.2902 49199.8066 34639.7645 64887.1565 56897.8075 30384.8207 33934.078 86511.6557 27196.8874 106831.8179 52327.7176 78652.8035 33371.1421 44220.305 46086.0167 196962.5426 75673.9175 82791413 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6490.0207 7346.0779 135075.2455 2560.2379 4265.8918 5797.6074 4682.4538 89764.1758 3520.4306 3954.6509 5767.6188 5767.6188 4619.0237 17550.564 3813.4629 16085.9776 11104.817 4889.4764 12949.5409 5418.9497 51852.9396 8830.2393 23838.4329 4461.2882 4650.6575 4437.1147 3968.7167 12459.0884 110270775 ppx Phosphorus Polyphosphate degradation NA Heliophilum fasciatum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliophilum; 10197.8208 6284.7171 5537.3041 4160.7402 5811.2228 3896.6429 7819.6674 7809.7334 4679.9445 166109.7479 10707.596 8101.5362 5608.1182 3206.0554 3206.0554 7434.8088 15012.3256 6039.943 10894.3443 11025.871 8644.8189 4337.9836 5542.0319 13547.5408 4575.1341 20814.2157 14989.6655 15111.5756 4578.4733 6554.8378 6278.5876 5452.2446 13105.4445 374611350 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 11109.4904 6435.9505 13741.4126 8803.2931 4827.5131 7685.3958 7434.7417 3698.8925 8491.7443 15925.6078 12306.7414 154377.1156 10894.3558 14134.1209 11103.7674 9234.4507 9234.4507 37131.971 13049.3327 8904.7554 8951.789 65661.5777 17144.9352 5025.7364 9335.1553 14630.9602 11445.9957 22883.5291 13855.1841 19537.8143 10286.0495 7243.0701 9687.4732 6672.4065 14863.419 146406281 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13839.9674 13808.3116 7386.9579 15682.5002 13641.2978 13471.5937 7857.645 29912.4218 11657.3382 114744.1825 56704.1258 165872.1046 20954.6275 11932.7477 11932.7477 11620.3336 24321.9203 13615.7994 31304.9593 11990.9214 12292.1743 7071.2702 18770.6571 9765.8597 32733.2774 32542.5881 17489.8201 30394.6793 34427.295 16599.0242 17195.9595 17184.8203 47378.3822 261285605 alginase Carbon Cycling Carbon degradation Alginate Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 12226.3079 7114.4372 9503.7008 7657.2218 8154.1036 95107.2493 4942.4897 10213.3041 9598.4587 7902.9925 191331.0998 9704.9209 7767.1458 23931.9564 21993.3823 21993.3823 11390.4428 16299.1152 10743.4532 12535.7913 15945.0458 1095941.6379 7462.8671 9240.0328 13008.7588 6781.6963 34172.3786 12631.36 16064.8937 7751.7169 13228.3431 22880.8397 7602.1106 16771.755 296118533 catechol Organic Remediation Aromatics Other aromatics Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 4948.8899 2943.7744 2719.7632 142425.0607 12999.5037 37369.1201 4757.6964 2733.9845 2733.9845 10401.2636 5770.2605 12549.022 5337.0278 4549.434 4134.5309 7107.8975 4620.4265 9010.675 7062.953 7384.541 3623.9027 4405.3761 3941.5497 5429.0223 255342068 xylanase Carbon Cycling Carbon degradation Hemicellulose Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 5181.1335 4726.7791 13227.3043 4706.1554 4049.0309 6047.3639 4996.0805 6580.9945 3646.7912 93549.4055 9408.1382 7640.8733 3969.1695 3969.1695 4315.346 12053.8116 8023.2039 8326.7201 7689.0857 10667.3316 4822.2976 3618.5004 12032.4944 13335.4471 13873.8678 7470.7924 9400.2105 5516.3372 12538.1347 5603.0526 4537.5106 7271.622 262108262 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 5708.6004 2676.0457 3507.2017 4111.7913 3834.5005 3011.4853 3520.9779 3897.7035 13528.6232 6432.7378 5925.0735 10261.724 5129.9844 3894.4416 3862.9724 8016.9889 3188.8169 14176.5198 7140.0406 8717.7224 1831.6436 4714.2654 3156.9448 3090.1992 10457.9855 288336374 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 8367.3059 2089926.3034 576395.2111 9802.6234 244877.6117 398870670 cara Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6869.8106 43066.3344 20436.4112 9093.4336 16171.5782 10624.9706 7465.6271 8314.8355 15378.9417 8674.9818 391577.926 14903.6869 24144.0342 6221.8561 8909.89 8909.89 7396.6594 63414.6631 12463.5534 7699.3451 12238.1295 13503.3475 9116.1325 6501.9696 20593.5548 23221.3446 68937.6083 17059.1311 17591.4088 10763.2649 6777.873 19697.7793 14615.0894 15914.161 119525323 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 30033.8291 20196.6694 16882.2786 22030.9887 16595.8794 5262.186 16907.3657 12901.1483 10986.1895 22355.4343 55725.7644 21855.6739 445305.4923 51094.4954 25599.1965 28740.8667 25071.9586 25071.9586 14273.1859 80652.6312 53404.1104 46509.0261 49761.3972 63056.5956 20924.7695 16642.5493 30243.3481 17700.2659 88302.9365 80304.2674 48400.2427 20763.7765 33562.5628 30990.9559 17247.8164 57016.4577 290568106 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 275448.1829 42832.5212 27943.7033 33562.5048 9397.2763 33894.1631 20310.1414 19403.1655 8172.9761 43149.7902 21745.3298 3203620.1225 20658.0696 35410.6368 51264.539 70555.6431 70555.6431 17775.3843 35169.0299 56467.2022 548671.6208 47894.4373 43514.3434 20000.6817 31484.4 49277.0677 32950.3054 44434.6181 21066.2384 37501.3231 10461.3554 18396.9877 23861.8842 11736.4412 76684.1138 333396805 terc Metal Homeostasis Tellurium Detoxification Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 9362.8266 6591.0435 7489.3094 5016.6916 10015.2098 6010.826 9000.8897 7461.2399 214216.7672 11643.5842 5892.358 14087.8254 5459.2096 5459.2096 3479.6516 16944.3499 6211.2041 7027.7852 5927.629 6144.207 3784.6976 4578.9934 13332.5632 4551.17 23332.9882 4354.219 10065.6558 5573.2019 14166.1334 8283.573 3459.1782 7994.3288 374570993 bend Organic Remediation Aromatics Aromatic carboxylic acid Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 5850.9073 7571.337 18076.8148 3181.8813 5117.7159 2240.4888 3659.909 5161.199 4052.5818 62547.1313 5594.3839 4479.8735 6451.0574 3197.3908 3197.3908 2736.9108 9025.8518 4895.9645 6523.6717 6637.7853 2336.0483 3087.1529 12981.547 2671.9972 10259.8267 5060.1898 8073.4813 2723.4087 3756.9276 4745.4014 2781.0209 7583.4406 199653466 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11448.5203 6095.3465 24956.0144 4216.3111 5874.3953 4515.8598 7728.5578 2694.5448 2694.5448 16022.8089 5328.7159 6858.141 2926.6206 4836.1733 3002.2798 3117.471 8599.7124 3588.0634 4235.85 89054870 dmdA Sulfur DMSP degradation NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 6386.0021 6485.3645 3466.1543 3267.6076 6334.338 5320.7623 2538.4858 5755.021 5974.7861 5297.8153 1922.6367 1922.6367 3671.744 12744.939 5549.3083 5117.9876 5997.3715 5268.1585 2956.1211 8423.4481 3698.463 9508.889 3425.0858 7300.5586 3678.7699 3981.7779 5151.8267 4036.8698 8156.5645 110600695 mer Metal Homeostasis Mercury Detoxification Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 9464.5888 50539.3321 24178.3831 8438.1675 7552.0127 2894.1457 2941.0584 7025.3615 7246.4268 10214.2275 127622.7566 5425.186 9703.4135 9360.5159 9360.5159 5134.7797 14141.8288 6679.9296 8923.4133 10234.6552 6374.1015 4047.3649 5834.8919 8983.5591 3802.2601 14899.5306 7086.5998 12214.1375 4893.6277 7091.8623 8033.6791 14806.362 6987.9347 156448630 chnb Organic Remediation Other Hydrocarbons NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 6011.3146 8743.0597 8848.1419 6486.1019 4763.2943 9668.6297 8747.4158 7651.6046 3939.4465 116338.9179 6713.9001 8516.0947 9380.7398 5732.8409 5732.8409 6106.9323 6764.6882 5770.1956 4993.7976 6470.1352 17267.6253 98348.0357 5359.0051 18413.3293 11265.8181 13590.131 5290.6995 14428.5719 15140.8646 13058.9576 386775366 amyA Carbon Cycling Carbon degradation Starch Brachybacterium paraconglomeratum LC44 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 12369.12 10166.5314 21395.6676 21440.9044 5951.2466 10995.7424 16411.7186 2450.5227 7648.6949 16719.9074 11069.0673 134374.0267 6760.1433 13648.2276 28604.4912 8136.6715 8136.6715 4993.122 25352.5251 14057.297 11889.1622 9531.5149 5859.2535 6376.658 13117.9658 16047.4519 8709.1227 19129.2545 10964.4678 12914.3675 3837.9652 6947.9828 13576.1933 10014.3084 14856.2243 399544321 phdk Organic Remediation Polycyclic aromatics NA Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 6040.0134 11727.7787 3923.7999 6617.2392 2557.3359 87153.5776 3885.9442 8290.1388 2249.5836 2249.5836 2973.4316 7286.139 4445.9372 6642.3898 6113.1813 5513.8676 2982.1069 2417.5718 5387.4445 1890.9091 9347.996 10263.8706 5618.3744 2782.616 3601.6347 3211.6759 12434.5072 319946753 amyA Carbon Cycling Carbon degradation Starch Streptococcus australis ATCC 700641 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus australis; 4163.6666 2718.9115 2921.6845 3502.7166 8372.0039 124127.3793 3885.9598 2810.9147 2810.9147 3480.9754 9882.5409 4322.8751 7132.7802 11412.2436 5817.6579 6380.2502 2560.7841 10102.6312 6368.5833 7444.4109 2977.9534 3891.4404 4469.122 2945.5724 6796.9849 326328853 ara Carbon Cycling Carbon degradation Hemicellulose Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 5067.8443 5061.6563 3170.1191 14137.7514 2049.1336 4239.2232 9158.1162 3514.3957 65389.0781 10797.8957 9818.9031 4428.0864 2043.2177 2043.2177 3642.593 7859.1163 5767.3969 5239.302 8580.722 5901.6394 3245.3243 5576.4944 5981.8239 25206.1359 6076.9243 1750.1206 4760.2966 4474.6822 2910.4882 8210.3141 302038994 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 7071.1686 9406.5255 2711.4658 3617.1314 8312.1715 4748.7095 92494.5284 6108.1949 2306.3997 2306.3997 3685.1147 28683.4197 8780.3284 4273.4965 6705.8861 4682.6047 2638.4252 3444.0901 9216.6165 3443.8508 14019.1489 6897.5849 7798.057 3101.0687 3346.039 6187.9653 2479.6202 8918.1699 328490491 tehb Metal Homeostasis Tellurium Detoxification Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 23380.9908 214992.9613 10109.1293 5415.2738 146801.3201 3051.9378 11420.6803 7381.54 4256.5996 218424.713 9688.5879 7621.8426 5245.2026 3510.2745 3510.2745 4025.7858 13659.9723 10721.1609 8335.5624 15112.5866 12908.7604 40747.9966 5722.4391 115680.8691 121810.239 18339.6141 105557.9042 12524.862 6273.4093 5815.9265 7732.0489 40043.0908 24631.0195 118439326 B_lactamase_A Virulence Antibiotic resistance Degradation Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 271164.5447 6345.9176 86140.8732 15373.1878 5221.9982 10466.8294 3095.7119 43703.262 32135.319 14006.5854 111422.6476 7483.4883 5884.2299 4452.3148 22848.6742 22848.6742 29462.9046 13939.3173 20343.404 9075.9191 36679.8817 17945.5543 10538.0999 14515.4567 38096.4539 37203.0813 29801.3503 32009.2498 15140.1601 16779.0582 200579.7526 17009.2164 333966180 terc Metal Homeostasis Tellurium Detoxification Thermus thermophilus SG0.5JP17-16 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 14761.1652 5385.6994 30707.9304 20833.3082 4556.6807 4531.1023 8542.3321 3156.0582 5994.4512 9439.4963 3963.9532 229076.3124 13760.7543 6715.6382 22129.2691 4465.9678 4465.9678 7489.0766 17272.6423 7249.4956 13680.0799 8648.5012 14864.9761 7186.7703 4798.6849 14571.7664 3983.3804 26902.1954 10666.6343 24072.7948 25339.7954 6175.6774 6669.6411 3743.4308 12708.1367 238023374 mer Metal Homeostasis Mercury Detoxification Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 68175.15 23113.4043 25860.5141 52175.0538 55221.0004 28083.6966 61164.1769 102820.2417 29274.1043 48579.2828 102477.3275 53330.4493 1078986.3531 279222.3501 35541.9573 58023.2452 48390.8455 48390.8455 34911.3416 87738.5961 65722.0362 144001.3135 296950.0186 69314.357 32878.6993 74127.8247 62027.5635 55285.4779 1151057.5891 64379.8794 73862.4817 102625.8694 37101.635 31182.1119 37240.9766 45415.4127 133739681 pgk Carbon Cycling Carbon fixation Calvin cycle Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 14241.2151 6721.2778 3974.7834 5315.9709 5415.7882 9920.7714 15891.2451 10767.4553 224681.617 12409.0531 14864.71 8388.8772 5660.3252 5660.3252 9605.737 13896.1261 12292.9636 11785.4404 16213.6356 11143.415 9969.0582 5767.0956 13601.5054 6363.5497 37186.9909 19848.5038 14483.0084 6193.4163 10965.0784 12419.2484 6614.7775 16648.7753 339883727 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 8987.6034 3830438.3525 1121463.6617 11865.435 4799.8578 26548.8895 2897.6042 4869.2401 2669.9773 75105.8753 5406.2016 4239.4642 2651.5233 9289.0379 4298.0445 6828.4166 7549.2543 2418.0818 3213.7303 5506.0265 3959.3827 10740.0771 6247.9796 6766.9172 9700.3079 8470.0429 3730.4544 2902.2636 167912.4758 120556132 quinoline Organic Remediation Aromatics Polycyclic aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 4336.3317 2541761.4708 11421.3123 4057.1166 18615.5068 6414.6458 2387.3502 3843.1388 3831.6093 2909.6889 85283.819 3967.8352 5055.9729 11717.7052 3913.521 3913.521 3468.7643 5231.7492 3855.8233 4241.4973 8565.8778 3190.4326 3347.702 9050.9451 2373.7426 8116.0493 6686.0633 9074.6879 1959.2094 4744.8599 5653.5281 2893.8747 6421.6528 255940650 phytase Phosphorus Phytic acid hydrolysis NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 25909.4181 23971.0162 16597.9445 27233.2406 37269.5064 5148.1691 23648.7656 30152.8296 19902.0887 25411.0861 28636.097 18622.8524 630441.4286 30176.5958 42239.0395 23705.375 13196.7405 13196.7405 17328.4423 34499.1481 23896.1011 20039.3818 31086.8072 34345.6705 12982.0541 13917.1594 34888.087 18979.1554 57326.9949 34936.4794 31796.2002 15768.6711 15994.778 36426.6286 14508.0473 38188.2717 311900923 pula Carbon Cycling Carbon degradation Starch Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 16561.7346 9683.5886 3162.1318 5356.8081 155921.9385 10056.9437 5263.7057 8635.1022 7670.1021 41438.2763 11722.2421 11722.2421 14250.1219 8585.4212 223397.8417 3454.434 3555.6389 18733.1406 10580.1413 5573.6586 7168.2292 12665.2397 5347.2954 5997.3593 26441.7928 227077392 cutinase Carbon Cycling Carbon degradation Cutin Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 7714.9126 15867.6473 8138.1411 4272.6023 5074.6137 12262.1885 11474.3123 12148.0549 11535.1741 196170.0634 9319.8071 13818.7232 5432.8999 5026.6486 5026.6486 9451.7886 22746.0445 11032.0292 10545.7762 16152.6043 22889.8818 15484.1703 6905.4103 12559.4139 5566.7659 19971.653 9047.4009 12583.0107 5447.878 6629.735 12333.3288 7501.6701 13821.1096 302480917 amyA Carbon Cycling Carbon degradation Starch Atopobium vaginae PB189-T1-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 16925.4341 6769.5556 5874.4448 41306.6206 10844.9346 14350.4727 8966.4883 24675.8191 11372.2977 708221.4177 16783.7441 26062.122 34704.5325 14851.8182 14851.8182 19893.3567 22360.4213 20218.3946 25570.4713 30738.6395 23166.1256 55396.7726 22468.8193 25770.5093 61562.3848 50995.7175 19087.4578 11651.0577 18165.3627 27223.4643 11170.6995 21378.9402 156191723 urec Nitrogen Ammonification NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 34561.9356 30182.1581 188931.3368 33795.2485 72962.735 254459.1522 15880.5024 21031.8654 23997.3223 37714.9494 52451.5987 32972.5237 904304.7461 20873.5774 47234.7749 166271.743 34970.811 34970.811 16415.3848 32264.4336 16219.8301 22466.7361 38153.8897 33150.4889 18136.7101 21204.3237 107334.4485 91667.3219 68020.1429 37760.9676 42005.0753 16475.666 20119.1848 45740.5844 21888.3388 28262.239 328938200 terc Metal Homeostasis Tellurium Detoxification Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7341.6302 6103.686 431068.2961 5342.4654 83225.0266 36972.8869 9527.1679 7077.1445 10236.0026 115951.1174 13679.0223 15210.3426 5715.0506 12492.8671 12492.8671 7315.7655 16645.2578 8555.7392 5260.2643 7271.8287 9815.8593 3410.5398 6361.6766 15333.642 68918.2618 52598.624 18650.0627 27019.4191 31477.5113 10641.0705 14376.5828 7809.2229 13410.1814 149375481 bend Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8165.5254 10903.6847 10150.4487 8548.2033 11134.7303 7009.1789 6509.9797 6164.4594 14303.1568 59107.326 12937.6033 479339.6432 11014.9051 8803.1967 10118.1052 16445.2309 16445.2309 4803.9709 20255.7298 9043.8665 11597.128 14867.4983 6629.8237 4569.7795 7391.2609 10407.4385 4971.5305 18114.1449 31807.5844 12901.5216 5412.8464 5960.7521 11830.0635 4120.9694 7968.2735 319756202 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 11922.8255 14763.9211 13068.5899 65963.9236 64532.1167 13168.2534 35920.3159 4411.8157 25524.5922 20744.4056 9102.0725 190180.8287 16142.5705 23978.1763 16036.8661 11242.4791 11242.4791 12280.5399 30347.1348 43269.7632 13021.6659 7928.0966 9690.7369 14210.6537 12528.9206 57569.0765 10501.7298 67490.441 34249.7976 50025.1739 15385.8544 17970.9602 37012.4528 7954.6188 16333.5983 119456450 mer Metal Homeostasis Mercury Detoxification Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 4657.4771 6092.2023 6887.9604 5913.5325 36861.2268 5556.7501 5875.4692 2596.2899 5223.4032 5619.4703 363712548 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 11400.4135 7787.7269 7899.8765 17609.485 30249.6995 5662.5685 9096.57 41291.5357 9073.4444 11320.0428 17828.5074 259842.0209 23085.8419 9165.6383 13851.268 18657.9782 18657.9782 12742.0357 22678.9227 12077.5279 42034.9995 18965.153 11200.2913 6781.1064 8144.9424 26894.2277 13074.1183 29964.3281 12647.3501 19270.6188 5810.625 12247.102 14015.3052 9369.3285 10613.9519 315645849 pula Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 111559.6115 30611.0926 160199.6862 57941.8639 125390.628 32236.6775 81942.786 322124.612 87578.0176 81926.2714 5580564.8049 207480.3162 173214.151 116570.7125 115519.6496 120209.6837 202060.9538 133239.5147 100454.8912 89027.9836 251829642 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. YF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 36100.3305 5754.6729 11487.9574 14672.0145 23057.6584 13535.0484 30226.436 15957.118 24109.4242 103995.4046 28518.0165 27224.7693 20079.7063 20190.7248 20190.7248 10946.3189 59230.1298 14413.7681 8134.3937 21361.7013 11116.9879 16328.0729 13437.1942 22127.0084 26562.9455 52057.1822 24261.7854 24536.3989 30784.0983 20087.9871 60972.6193 11641.4667 20642.0933 26986211 SoxB Sulfur Sulfur Oxidation NA Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 7098.7688 73215.2797 16577.7954 9314.0776 7132.6085 7467.832 8485.4236 7153.0525 174746.0443 8759.6082 10293.7349 5071.8384 5719.4735 5719.4735 5906.8611 12918.5601 11392.6535 11651.4552 16808.7161 12218.9828 8928.595 4495.2413 17039.3801 8334.2446 17489.9459 9936.4512 12486.6529 6632.5141 8259.4947 7040.0455 9502.5992 14214.6702 116249170 badh Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 33783.9665 22419.8073 34477.5196 15514.1229 7499.2797 24331.5261 33802.3385 11274.3748 26922.2519 30326.7971 15071.9292 774106.7261 28748.9122 34082.5064 22315.7367 16266.3014 16266.3014 20714.462 30135.6512 22497.0318 37790.8943 35823.9326 39583.9152 19475.4204 13679.4958 31285.3281 28757.7688 43186.9437 25090.6363 38609.8394 14950.8028 14402.372 18262.4129 14177.6144 45756.4249 83316600 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3856.7225 108946.5647 3817.3131 5998.3594 6613.006 4069.1818 9642.3061 3601.7894 4472.4176 4315.6058 354618386 cutinase Carbon Cycling Carbon degradation Cutin Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 22767.6172 6807.2239 12109.8103 8497.8595 6221.8231 5540.9658 2756.6406 5178.1666 6888.4425 6142.964 141552.7426 19458.8702 13034.2667 8600.2965 6553.5761 6553.5761 8632.387 25536.1714 11746.318 22795.9073 14973.2183 22734.794 7064.7404 6843.5221 14320.0538 6571.1063 24789.6126 15987.8404 13797.6436 6968.0242 10241.0505 11419.1758 9933.2064 88595.3581 118468557 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 13344.7747 14313.0006 28191.5417 6573.0264 8539.1101 16140.9228 5557.3127 10494.8558 14629.495 14358.7185 239244.0063 7509.1545 230141.1375 8421.5628 6069.5 6069.5 10141.7772 16685.158 30087.5286 13150.1931 15238.6103 7314.3083 4114.9454 7630.6967 15316.8719 9015.1053 26976.6267 8871.1139 14517.6163 7778.0139 8600.4852 11282.5444 10980.7379 41011.672 407235836 pcpe Organic Remediation Herbicides related compound NA Burkholderia phenoliruptrix BR3459a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 5350.4304 16045.6949 6862.5811 2629.6429 2022.0215 16013.4088 10984.8221 3455.8884 23848.697 5650.8621 2411.3363 2411.3363 10392.8482 4225.804 10320.4863 2307.754 4530.8562 6861.1788 10080.0319 18685.5843 5659.6662 6903.7757 2682.0397 4907.2332 3362.1002 4596.6146 12574.4339 373890839 RgaE Carbon Cycling Carbon degradation Pectin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 22922.4419 103736.1815 18991.674 8870.3652 51665.0949 19044.0405 25660.4392 29485.1386 19584.2305 34269.3225 16854.5579 427103.2747 61225.2857 32201.4218 50356.4138 18140.6324 18140.6324 15103.119 45811.9991 24297.0342 100112.5736 31023.3256 47429.6588 26657.6239 21551.341 28902.8512 15180.0598 56532.8983 25425.59 30584.7494 12888.2101 22162.326 24524.3211 9262.9903 36092.899 357045843 rgl Carbon Cycling Carbon degradation Pectin Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 7222.4382 8292.1237 11661.4584 18299.2267 5622.367 7899.5965 21307.7783 13567.4184 5717.4966 5647.5776 4706.6417 141627.0477 10517.3236 9216.028 10754.5383 7468.2968 7468.2968 3923.7016 13395.5266 8120.373 5422.6927 7377.0696 7232.925 5859.2165 6004.7004 15476.8098 20315.6946 18519.8089 21764.5387 14116.0371 7721.3233 5541.5244 5315.0196 4229.5751 19661.8225 87281197 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4173.9994 2121.5001 1963.7778 3606.2828 3085.3723 88447.2898 4354.4226 4546.0858 4311.5931 8813.7435 5014.7357 10510.5315 7379.1373 2841.002 6427.6693 2122.0693 12744.2335 5491.8795 9859.5709 2439.1328 4353.9751 4316.3631 2388.4911 6365.9919 334131543 pgk Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 124156.8481 11595.3527 248661.8092 132247.5806 181246.7539 110602.0918 56480.156 270932.9335 61905.0576 247438.0262 166024.3112 137824.5607 2085536.6503 401991.3098 176110.6549 114828.7821 314508.3854 314508.3854 224018.9776 134849.349 256341.1636 139652.1379 292777.6699 69213.61 283296.4691 135555.9072 531475.0904 221306.5047 1134605.1187 87843.448 150405.5227 194009.2056 82211.4204 164408.0097 146040.2679 94996.3751 359736053 pcag Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 19984.9564 16891.1364 17174.4333 52015.2434 15463.0024 97009.9255 45216.0795 18490.4811 1264874.952 8551.9456 9198.432 5201.9062 5006.578 5006.578 5044.8236 15734.8025 7286.2618 4740.2024 10821.7693 10273.6686 4639.9911 5208.9188 7474.6866 8120.2994 30703.6118 8539.1678 8768.7235 17104.8396 5416.6781 8971.9926 6314.8365 222440.1257 133778506 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 89236.493 676776.5305 73442.5026 1211271.1021 79223.6991 48589.2418 246296.9034 60561.0138 95264.3754 127054.182 79584.4488 2786451.0746 265042.7719 234622.839 157255.4201 82987.006 82987.006 91028.379 130267.2407 64048.2644 97709.0296 143268.258 187558.316 101557.5037 67236.7854 232941.037 75144.6239 325794.6389 160853.296 192383.5831 80776.7521 95677.3406 115538.7593 58945.6631 76724.8827 220907037 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9907.6004 1328665.4135 13047.0365 10784.8424 8680.3639 4622.0259 7893.8241 18024.9499 14021.4686 235615.9938 18502.9399 11427.6635 5785.1826 4383.5174 4383.5174 7657.8927 15335.6532 10187.4089 12519.144 24078.2176 21222.8046 5295.7294 6699.0473 16776.4493 6475.7177 22446.7341 19515.5296 15703.8599 6962.5176 8893.2906 12170.2556 7060.8795 15908.2234 21220201 cymc Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 50067.4088 12629.2307 53198.3415 39317.33 86815.432 10231.6831 18179.9498 18194.1775 10315.7155 15553.0994 623750.9178 42175.0988 588181.5008 53640.0535 25225.1898 102883.65 26298.6615 26298.6615 86724.9955 40883.4626 27599.3648 38966.5192 56274.053 32891.6461 20480.0373 39305.1201 34318.6033 29291.3765 73751.9816 59115.4 50074.6147 29929.0919 31610.1294 27660.1509 15052.7652 96714.8416 28542575 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4816.7299 2433.2013 2853.502 3906.4511 18027.3327 13808.1015 7031.3307 10270.6419 3210.3499 3335.5476 3103.2794 5863.6754 89145062 ppk Phosphorus Polyphosphate synthesis NA Microbacterium arborescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 16550.56 10261.4912 15738.8996 69439.2208 7449.4435 3760.0298 8040.1765 9573.9701 3212.1007 2669.7162 2669.7162 4732.2032 12935.18 5053.7681 2397.7692 46431.194 14874.208 2744.8846 10924.9686 5104.9729 171694704 cutinase Carbon Cycling Carbon degradation Cutin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 17499.859 60139.4791 29140.8641 20891.3044 24561.9773 7875.9616 10397.9695 8753.9778 12010.7154 20236.1144 81717.63905 10192.0282 215519.6312 17043.9691 24241.5614 11848.7066 11848.7066 18798.6262 21191.0384 13040.4042 8160.7229 10773.5448 27154.3163 8822.6353 18928.1502 10587.84595 5856.07425 21820.5598 239591309 oxdb Organic Remediation Aromatics Nitoaromatics Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 15798.059 1452547.4469 408760.6687 4740.4842 5453.032 5493.9218 10017.9532 8859.747 9114.2665 5670.8685 141921.7402 8920.8649 8825.9668 4513.4067 4252.8021 4252.8021 8453.2997 11455.8118 8017.0905 7796.6344 9388.1706 8582.9906 4984.5825 4141.9791 11777.7753 3924.1389 19730.2402 9393.4117 9125.9825 5178.362 10173.3972 5872.5214 4734.4066 23145.1841 302443011 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 75214.2406 11816.1529 24901.6688 25026.158 22941.4123 12282.4648 20143.7156 64459.4761 18051.4148 27592.8564 55630.5659 56686.0932 1010030.3188 34991.997 36513.7484 41968.6828 30526.0617 30526.0617 27913.8132 60044.6623 26961.1052 67962.836 88375.955 128446.6099 60028.2641 48056.3405 35175.9645 69805.6244 90377.5285 75270.8234 51722.8338 19658.7098 89009.1167 50115.0221 22304.8098 118044.154 89360249 catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 147919.744 18200.9068 31127.6449 57749.6877 66846.4938 16416.3169 40180.7246 120154.4234 78985.2525 97562.4745 79566.2441 103264.2054 1587855.4728 86253.505 232288.8485 166894.239 102815.0432 102815.0432 189994.3183 210322.8079 108980.993 69639.6281 167045.1403 66627.9899 50399.8285 86201.1795 228306.3713 69043.2081 281975.6236 122258.6141 108140.4109 26207.9194 62588.3602 80418.7511 44256.4026 193786.3406 318081516 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. SA3_actF superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 31474.9221 49958.5187 10937.9477 16251.0748 11251.7655 12707.3119 19686.6764 10904.5817 18502.714 33529.2996 22839.3818 567706.0279 25855.8036 21967.3932 54719.1267 28534.803 28534.803 32228.6251 32324.849 35917.0486 35260.7106 87610.3254 28329.256 14497.4405 16983.1956 765229.8851 18263.8409 82675.4253 34207.7698 46440.3204 16865.9806 30512.5611 35797.2346 23312.9204 36203.4841 307545821 nasa Nitrogen Assimilatory N reduction NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 116186.8566 17076.6591 39147.9644 45143.4383 166243.7459 31028.2277 54795.258 65909.561 72606.3354 113466.4119 168253.7174 112203.1163 1786452.421 150547.5999 139510.9991 145657.9579 90873.0351 90873.0351 71697.7964 207015.6099 59629.1705 121558.3406 417780.1566 129650.5839 88821.5619 70589.2801 98084.6448 99662.7003 370020.7666 85479.1896 106383.2355 183384.3361 82332.1095 93708.4734 60793.5841 185940.855 260894691 cysJ Sulfur Reduction NA Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 5066.6518 381360.5034 4648.0116 2107.3009 3164.7274 5176.889 3987.6286 294693.7581 5340.3092 2977.7919 2977.7919 4159.8651 15486.7214 6742.1142 5906.5997 6618.2065 6333.5163 4705.4657 12171.5657 6654.4855 17421.4349 20286.076 5183.0528 5042.6043 5004.4362 8729.51 3603.5854 11739.1154 169607132 glucoamylase Carbon Cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 5292.0218 339328246 poba Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 13213.4013 11964.5977 26293.9954 6248.5478 11779.2692 8882.7971 6653.1925 12418.6612 8954.2228 6586.1294 244086.6259 11355.942 13269.7527 17722.4959 8528.4461 8528.4461 9326.8385 24557.4633 18963.4864 8483.6626 20418.9751 18666.2034 8750.8039 7528.2521 23099.1515 7216.8512 33153.8296 11442.0109 22632.8778 8195.0017 10177.3935 14429.8827 7455.754 20041.9127 340841897 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 34977.5441 6611.7306 9201.0763 5288.2893 4480.4734 8093.8432 6428.8839 7788.0808 3251.315 125163.4743 10198.1029 7955.5392 4474.6133 4474.6133 4500.1184 15328.3346 11342.1049 24225.4886 9658.4914 7694.5061 4338.7262 7421.3202 8954.7835 3817.248 17044.529 6028.1119 9139.3532 4479.8295 5043.6231 5532.2296 4702.8112 11674.3583 289669819 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. musacearum NCPPB 4381 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 10388.7097 5691.1229 5681.5453 5378.1153 2480.5603 5761.4229 2790.7648 149939145 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 10679.7172 111411.9509 4802.0182 3706.0982 2741.5255 4780.1021 3979.9091 4807.868 33995.701 8331.1261 4402.7241 4402.7241 3827.7346 7132.1756 7724.4408 4638.9939 3219.4297 8303.6824 4986.5766 2726.7721 6182.4203 12920.3305 302421756 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 162056.965 18000.9072 86209.659 108301.9259 416864.9235 30654.7349 54381.297 248591.768 57168.7425 115446.2923 156759.2491 110185.7674 2259849.4291 189321.2112 119133.5196 189199.2438 109305.4773 109305.4773 78557.3406 121312.0842 70892.9349 217950.8388 110031.6295 166702.5237 112533.4289 116943.3346 107429.2116 148930.2238 385140.2374 93695.8917 144225.7765 131170.5374 112655.1008 185865.6765 102374.5159 214324.4474 73763022 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7475.9756 5690.4567 9499.8047 3336.3888 2233.9018 11200.9783 6748.6343 7806.4829 123534.7093 3674.1195 6867.3052 11690.6869 24560.2081 24560.2081 3875.8308 12049.3988 10152.599 14897.7703 102625.4522 4101.7357 5378.5034 27929.322 7136.9091 27331.7212 34361.7539 16663.6458 12012.7716 4773.9779 7868.1568 28738.1236 6361.0568 39566.1269 29833735 ppx Phosphorus Polyphosphate degradation NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 10309.4428 5333.429 5551.2422 4878.7496 4813.951 6715.8893 14012.3616 3819.7042 272143.5529 7887.699 13119.3077 27483.6727 6609.9599 6609.9599 6986.3991 8339.6828 7997.6089 7737.2953 12969.9908 8219.1731 4291.4644 4463.7086 10917.0918 3920.7639 33979.6378 6993.1214 12724.7889 4405.0043 13595.0368 22237.062 2763.7218 12389.9263 281316683 ara Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 7332.6775 5399.7439 7469.5719 5010.1692 20335.209 10203.0655 12121.7507 4004.7057 99189.5011 10165.3477 10807.7896 6973.098 7850.5346 7850.5346 5971.9615 9308.1466 7313.9937 12477.9395 9379.3692 4534.1709 2963.2798 6552.1863 10329.1288 5166.7741 10297.6181 10229.0074 8353.2077 8897.9498 5326.7945 8297.8492 4017.673 9039.3742 83747593 proO Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4961.2731 6433.3704 2586.7226 15184.5605 5078.1234 5834.8003 131610.4038 9284.8603 4034.9862 6965.4335 4140.111 4140.111 3362.0877 10682.3027 4856.5961 53106.9786 10471.8267 3072.0722 6136.0449 2473.8645 12447.2915 15429.8198 5321.317 6480.2041 7702.8429 6022.6025 3739.0623 8836.7867 146306697 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 33436.6419 11805.5821 11613.0601 37674.4526 6201.7547 10523.4728 13276.098 10483.3706 17598.7629 22836.1329 9703.2164 242736.1343 21325.0228 18415.7706 24239.1935 18304.9525 18304.9525 8810.1269 17976.2007 13443.7588 16630.9851 14966.6747 18386.9068 6218.288 13766.4544 28603.1471 6079.0946 40726.4946 31401.2311 24749.8146 10848.5749 14422.4104 14413.6157 6346.9836 14803.7125 404435009 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 7990.6426 22030.2158 12519.2414 5700.4731 5252.2124 4653.8071 6400.4665 4108.4853 138004.3692 5710.7344 7741.2617 6748.8065 6082.2465 6082.2465 4860.4693 12137.5619 9788.4441 6612.5343 4779.4069 5813.6469 3102.1252 14504.6805 4592.4154 49707.6111 10309.6474 12265.1581 5547.6164 4685.8901 3901.2442 4937.0785 10805.7665 237746764 TIM Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 69913.9044 29091.6297 21307.1661 493474.2084 55958.7476 11397.306 29774.8868 184835.4594 22859.3142 28896.9519 33197.9412 16841.2632 787343.7181 42393.2425 43679.1011 38560.2579 29759.5317 29759.5317 33352.7215 49468.5637 30887.1132 41927.7895 38317.1576 43944.1552 23195.5322 19070.2335 36846.6139 31701.7129 87301.4208 26860.3422 47686.3062 26776.4523 32865.8538 21376.9684 17076.4279 56087.1211 159030986 nira Nitrogen Assimilatory N reduction NA Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 6709.8821 2486.9855 5971.8408 115423655 chrr Metal Homeostasis Chromium Detoxification Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 19050.7986 13665.8134 16115.3771 3413804 cox1_Viridiplantae Other Phylogenetic NA Chlorogonium elongatum superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Haematococcaceae;genus:Chlorogonium; 73297.3608 27240.6469 109023.6915 1522836.2496 21869.8915 25185.9907 33884.6428 69876.9387 28738.5808 62890.5022 332795.2061 45149.5069 2019961.5975 71319.2556 80821.9436 69154.9945 59802.1189 59802.1189 22127.6237 212258.7897 44660.7867 50247.3693 66594.4677 27477.8875 22807.5744 35220.4084 42623.7595 186904.7752 87897.755 48010.6563 39020.3767 50240.4307 26829.2728 152102.6425 39461.3676 60489.8252 90418679 nhh Organic Remediation Aromatics Nitoaromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 26880.5475 17922.0432 202009.4022 80164.1548 34835.3562 16991.8477 19235.9237 10828.9736 16102.7378 13376.0692 272198.3873 22779.5894 16802.7939 24832.1363 15895.1872 15895.1872 82888.0079 29964.0772 17924.9469 25215.5209 6079.9666 31518.77 4428.765 18206.0259 31655.9222 92709.0821 70056.0029 31888.6617 32397.5478 19695.534 13389.0675 44847.5594 10625.113 9286.2061 262338554 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 149593.3611 42028.5634 629409.6658 1127996.0668 265327.8778 40936.4984 152917.2402 220723.9837 313368.8542 206913.0945 209274.7864 175624.7195 15936836.4471 227847.8463 282402.5735 354760.3527 188609.6498 188609.6498 92242.7732 229898.2108 167569.6316 413183.7058 226420.4428 253803.6471 86525.674 102431.7091 158965.0485 97242.164 318949.0609 164488.2494 149995.177 114329.3699 118190.0342 131471.0431 93025.9951 206064.9842 295103808 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii SL3/3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 28601.1289 59533.8369 20917.9979 91670.1721 20662.7871 15646.9592 23786.4899 16604.8758 24487.2472 33521.6643 56502.784 676281.8958 40607.1212 37588.6605 41670.2862 55442.8656 55442.8656 13143.1756 38580.4337 43324.1032 38838.4432 83750.69 21155.4389 29795.2681 25030.7818 33935.4042 15582.7154 72930.4466 59722.0104 43815.2915 20319.0698 20118.429 28058.5436 28543.8977 34599.5359 255064785 hao Nitrogen Nitrification NA Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 10183.8658 7609.8152 9372.013 5626.3839 4127.1728 6520.2367 3854.8209 76446.2402 6350.8798 15135.672 2154.0407 2154.0407 4350.6625 9428.8514 7347.8906 11084.2766 7146.6947 8892.234 4981.6672 4994.2417 7426.0856 3030.2703 13827.414 11474.1995 8386.1762 3973.1809 6711.6977 5587.9788 4689.4689 9180.1242 334125389 cysI Sulfur Other NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 128754.799 15281.4899 147814.6044 10923.69 12106.0812 190858.2315 97795.4125 129786.8838 25021.7813 38175.3491 52229.4883 39384.7794 4819676.1085 51205.3791 26630.2274 33307.3152 23356.3698 23356.3698 72869.8573 47388.4886 19255.3114 36737.6322 83800.5828 52178.5059 20159.0521 26666.1409 102336.0367 33469.9824 70111.1842 50416.3157 49394.1011 29541.4682 43344.9585 54451.7011 66351.5963 424161.4896 171057103 tktA Carbon Cycling Carbon fixation Calvin cycle Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 114144.0584 21888.3109 8522.5005 16294.3498 8081.8542 8271.9503 36448.6814 9406.7092 15558.5016 16549.5291 16593.8783 222184.6538 27714.3638 24020.9928 32284.4439 18094.6714 18094.6714 17432.8085 149411.9869 15445.4019 27578.0578 19281.4633 13033.7163 16720.5715 12231.294 31103.9053 35069.3301 46359.5738 20571.3614 24796.3301 13152.5695 17621.3286 15576.9123 9948.1913 18167.7938 337760917 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8949.1562 78279.4646 8493.2082 19756.2505 12368.7381 5921.8167 9197.3809 8338.3885 11783.6054 382922.7479 8950.0645 12803.6933 7707.5165 4472.0998 4472.0998 4219.2411 30504.7979 8867.4688 81266.6195 8255.3172 5115.4303 14556.2218 6529.6451 8244.6198 21083.6387 35670.4641 12054.9543 40021.0542 12566.9224 17477.9694 16629.7528 11889.3683 5043.666 193224935 soxY Sulfur Sulfur Oxidation NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 34629.5361 230104.2234 95799.2333 112443.3544 7098 58959.5016 184679.905 7743.7049 31536.5419 36697.4415 61268.9318 262637.0786 20314.9802 77875.9262 35360.6232 22371.5003 22371.5003 22405.0286 29302.5593 18848.0505 28929.1262 35178.9843 17242.693 71689.2756 12019.0259 46301.3438 13683.6708 53260.0927 59847.7668 25207.7297 14917.9782 19174.4529 20393.2976 12367.9322 19042.7455 288924210 xylj Organic Remediation Aromatics BTEX and related aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 15676.536 19811.8926 17844.375 17652.9251 38008.9255 10274.2144 8517.837 14904.6411 24303.9072 29031.0947 369831.561 29680.6821 16210.6585 19106.2706 17728.2978 17728.2978 41223.1524 23638.1269 15831.876 17548.5003 26422.5967 23363.9605 6703.6701 11152.0908 20447.41 11505.7755 40159.1625 25755.0183 30091.0465 10819.5331 13287.9684 19882.6849 8296.866 13812.1355 85827193 dmdA Sulfur DMSP degradation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 42811.3522 14627.6746 553997.3519 133116.2639 369272.3151 13441.3429 70402.9982 61748.015 81196.2652 47241.1497 43358.9435 44985.8521 1484610.0186 53768.2249 65044.521 101458.0152 35866.7064 35866.7064 46831.5715 79090.1958 60525.2342 218311.8078 74150.8285 77379.5575 36872.8948 31588.6057 62363.9947 44290.1504 101198.7424 96614.4189 73122.7287 31976.0357 50151.1633 40767.356 30654.7189 82578.066 184197445 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 29166.1669 45689.0487 12486.1918 11117.2573 10120.96 6232.3663 9201.0937 12479.2743 15690.8601 273678.4282 15417.1605 11620.8386 13410.9089 11643.781 11643.781 9690.0084 22853.6555 14874.4475 9499.0343 36836.6455 8451.0255 6726.9263 16653.8567 16521.5757 12154.3241 47708.3748 13983.1276 20198.9185 5889.5148 9791.0545 13312.9557 4651.6063 13139.1158 379989495 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9971.7626 5626.093 28831.795 6080.9155 7471.1786 2659.4498 7729.7446 27416.1214 17435.2614 179934.9386 138346.6842 21738.7058 17168.5094 6135.6751 6135.6751 16547.2424 7271.4495 3819.869 10157.7317 5471.7622 3695.2546 5042.3175 12041.1979 4548.9632 23640.5757 7593.3491 12686.8254 3186.8164 7510.5075 8308.3553 3540.4904 7142.9477 148806816 tfdb Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. RD5-C2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 109753.2503 950640.1515 7527.7467 55236.6426 26173.4931 10140.384 19918.9965 14950.7586 31254.9492 38586.7757 56759.3566 581001.3408 46891.7201 43520.219 48893.6352 43584.2604 43584.2604 24870.1599 100191.5349 34072.7889 51615.6424 33692.3532 41742.3705 41883.9318 44857.1091 74515.3039 62314.7494 82647.0961 53883.65 56275.2346 27749.9669 65155.0955 105903.218 32335.0935 34706.349 184197560 PRK Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 293170.6858 65833.6658 145007.6943 151932.7718 296285.2924 261347.4275 102379.2099 276995.5083 151994.9199 167093.7649 270153.494 155391.5704 4920268.3847 231114.4617 436289.0187 950166.7036 271522.9822 271522.9822 82730.6293 173596.3361 109358.9153 240569.0569 175772.8384 243109.3426 66469.6219 132007.699 225991.3684 70740.0848 366756.8022 171966.9458 183180.271 120792.946 136850.466 133878.5169 65874.4735 122790.2598 373235161 xylanase Carbon Cycling Carbon degradation Hemicellulose Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 6023.0383 16156.2584 9520.0959 4029.0828 6519.7614 5726.4613 14366.4481 2681.269 2681.269 11230.8237 3935.0145 9524.2314 7869.2953 4710.4086 10747.2722 4015.4041 6243.4743 4738.9094 255923395 pcag Organic Remediation Aromatics Other aromatics Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 13609.4654 13290.7683 281082.5109 70752.2111 14166.6109 7420.0002 51492.914 9770.1871 13839.7305 57408.1232 103580.6458 13068.1441 19660.6465 21854.113 27695.4248 27695.4248 4463.6351 24845.6483 38881.0132 13367.7197 11269.7907 81532.7461 15850.4386 16796.6762 17920.2323 11925.682 127313.2078 17164.8571 22144.3156 19774.7085 33694.6382 41667.9477 10947.5735 17403.2485 115259785 aln Organic Remediation Others NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8578.568 28671.2233 11168.6537 7871.5453 3108.7456 9674.8787 6142.9498 27813.2288 9868.12 4414.4734 213938.7787 29298.4457 35788.0044 50472.7298 5458.7963 15296.2667 11467.4707 13730.2792 13539.8172 7445.9071 7167.9427 10124.7797 10725.9952 6408.561 37102.8348 12653.3643 11988.54 3941.4252 9342.9011 7786.5266 5674.6297 10698.2234 363805736 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 82424.2218 22612.3588 21427.3381 67664.7951 12130.5551 47771.5642 31799.5132 105070.7791 38090.2552 36546.0726 43334.4598 993639.6873 34972.6103 50033.1973 50875.0245 27903.6482 27903.6482 26894.1628 62019.8168 35329.1511 27413.737 45544.8009 78368.3576 26771.9783 17192.6672 53230.996 100641.9789 79556.1337 74230.6515 48694.6602 27246.7865 60846.8106 19317.5275 26248.2876 66011.5315 52350378 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 15065.9955 13849.8776 15994.219 8154.42 5254.3318 15198.8 9732.8135 8289.0524 12455.6552 14909.3625 6509.7321 354059.9418 18485.1341 12668.3944 12817.7508 5025.5639 5025.5639 11693.8738 22246.3362 15607.9262 16460.1812 18173.795 23585.0102 7524.1831 7914.4245 20444.8025 6636.9473 32117.4992 19282.9561 22308.4248 8305.3415 11541.9507 12418.2644 9498.379 23334.2016 239824148 phn Organic Remediation Herbicides related compound NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 9714.7883 174650.4804 17507.2179 3219.3887 26565.0353 4168.6775 5236.5502 5599.7483 125107.5016 26057.5736 8900.0341 12993.9789 3388.0932 3388.0932 2860.6091 11896.2358 5595.4038 7557.2955 4741.8484 5913.5219 2177.7759 14715.0313 27559.464 3047.086 6063.6051 9168.3751 13382.0896 4481.9111 4535.277 8516.238 4027.4281 9705.7501 196482340 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 24504.3625 12508.9543 2614.4139 2761.7262 4169.6269 6994.9373 2651.762 98757.5543 2295.477 2295.477 8080.7031 7386.8672 5503.0186 6437.0117 5134.8046 3520.2292 2648.4232 6055.9956 2759.8662 11486.8389 4269.8557 7306.8048 2749.4178 3986.2097 3919.6803 3392.6441 9203.721 302886551 badh Organic Remediation Aromatics Other aromatics Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 133017.853 5834.4088 2117.6542 14168.689 6090.6603 6328.9501 6747.6189 471855.5602 95355.1055 4527.1261 30048.4096 9234.0426 17997.0807 810795.2189 103574.5676 102260.3498 30462.8583 116633916 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12003.8267 8210.1791 8271.51 10491.2431 6378.7252 3918.4028 7464.7305 9805.6637 20049.6465 161377.2789 8794.8802 11342.7488 4320.4647 5827.282 5827.282 8046.41 13177.5112 10431.8358 19664.1704 10355.2643 11865.4514 6021.8 4650.3613 7891.9803 12045.2149 27136.8702 13555.0949 12596.2802 4043.4208 5872.0075 8676.3337 4349.2068 14644.3777 328951818 arsc Metal Homeostasis Arsenic Detoxification Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 10898.0595 13562.0882 3642.5808 33817.5538 2473.3478 2473.3478 5400.5754 7642.26 4846.8282 2950.3587 13537.23 31609.5201 35054.8078 5322.4173 4404.6962 5370.3937 126711044 pcag Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9598.6782 5306.6792 8479.5562 5279.0168 15657.5515 5805.3375 19896.5658 9158.2193 8729.3219 19204.3943 87837.7157 4699.3757 9518.0988 7664.6744 5585.0997 5585.0997 5324.0996 10288.4471 15233.3181 10448.8587 6961.8253 4761.8503 85668.4359 13175.6776 21601.8981 8447.4149 40643.739 17757.9485 14216.0157 5944.1294 10670.4937 9494.6914 4695.1441 19270.5787 255707096 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13543.1823 48748.3598 133447.9031 40650.8632 6605.8572 71392.0803 6119.8162 3827.5898 12502.8911 10499.0399 10024.9149 788784.5239 14858.5983 20587.0095 20373.4215 13428.2369 13428.2369 55413.7973 21031.5413 11927.7438 12835.3272 15198.262 18362.797 10586.4156 6715.7921 255680.6893 7653.3236 68130.9094 11673.1477 12203.3095 4314.7304 12763.6454 21232.0541 8522.2011 46381.2153 111147968 ppx Phosphorus Polyphosphate degradation NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 77708.0042 69444.267 21077.839 32904.1036 25433.268 25247.9511 42934.5195 52795.2489 20833.5304 32249.0744 23705.0699 516268.6852 36524.4491 31650.375 103970.4268 49721.4663 49721.4663 19474.6551 57283.6117 29993.8416 33018.1955 186476.0585 27254.3844 104951.1177 31273.617 55854.647 23963.1525 90399.6539 50980.4323 81414.2557 45220.786 35966.1435 41628.514 20435.7187 29582.7717 329849932 arsc Metal Homeostasis Arsenic Detoxification Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 66540.7262 30590.7079 12527.297 113986.9269 45463.2575 17606.0632 29224.8617 33770.1475 34316.4086 56724.4221 318536.4646 43401.5385 98604.5919 33644.6735 59662.9786 59662.9786 30394.4039 93927.8073 34712.5849 43942.9768 96139.1768 79181.2515 29343.0945 53617.717 38153.5116 27261.8376 80421.6821 31369.493 50867.2168 56674.3886 29086.6011 88161.1581 28464.9699 745969.9419 407787065 nosz Nitrogen Denitrification NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 4812.1079 10734.9224 16846.0829 11404.0891 9032.2346 17873.9169 8574.2486 7922.3794 8950.5277 6747.961 190870.0866 12709.6208 15861.1593 25322.6692 19976.3885 19976.3885 6288.651 16641.4374 9413.2417 9519.2818 45362.2786 8675.7531 11381.3664 9689.87 27323.502 26863.84 117084.1225 22508.5076 19082.6838 11168.6451 9101.1726 23307.9456 9277.0797 9393.3506 332170175 amyA Carbon Cycling Carbon degradation Starch Krokinobacter sp. 4H-3-7-5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Krokinobacter; 10245.0594 333989772 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9301.9629 17432.2077 4666.1279 10497.3196 11030.7608 8858.837 6918.8391 10930.5156 20609.3485 12108.5512 163463.6896 13423.372 17340.0822 14748.2406 74891.8694 74891.8694 6325.9989 17343.0846 13695.2937 13779.0357 20926.1158 54948.7134 10795.4482 10804.7213 19290.9003 27896.5714 25815.955 23162.7045 24227.038 6735.3064 15283.3737 10965.8235 9146.0869 20058.3836 315408697 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 7643.7094 14958.7629 13035.6612 36236.9714 20108.4082 11652.6234 4056.5773 6377.5637 26537.4555 11278.4278 68096.5239 16457.9889 7162.6843 35289.2318 5517.5901 5517.5901 3997.3484 39636.5862 8528.643 10595.4067 6637.9355 6190.9757 18651.3756 8018.1413 21871.1764 17436.3137 4717.7577 7518.9439 13598.2983 7812.1296 10233.477 3830.372 258511582 catechol_b Organic Remediation Aromatics Other aromatics Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 8914.2201 5331.9696 5856.297 20517.5241 5406.2695 6278.754 4363.2538 8559.1165 6638.2075 5173.6892 178213.5294 6305.4824 54062.6223 5255.6279 3114.3249 3114.3249 4530.504 25675.0947 7753.9411 5542.9809 9446.7535 9126.9099 3902.2233 5184.8187 10148.3338 5060.036 17049.7638 7959.1069 12552.8655 13844.6965 6684.1571 6344.3712 9134.0394 17999.9471 296242846 beta_agarase Carbon Cycling Carbon degradation Agar Thermosphaera aggregans DSM 11486 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermosphaera;species:Thermosphaera aggregans; 3828.3729 6064.6309 3194.1565 5047.992 2729.9728 2729.9728 6411.2567 10269.1475 6016.0367 5412.0665 3490.3732 3139.7681 5878.6765 10161.327 6877.1729 2710.6502 2885.475 4275.3117 5031.0825 296264345 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 13045.8852 7398.1973 7663.5748 4889.4147 4593.6788 7473.7491 2989.3544 168795.5511 6876.8038 5039.0262 7754.905 4542.3254 4542.3254 8319.6765 8944.1132 8736.5857 5808.3074 6390.7219 7682.9942 4854.7659 19179.4766 7302.6952 7514.8997 11661.7116 10855.6632 9796.2554 6087.8516 7427.3526 4036.2814 4073.8532 117618319 nrfa Nitrogen Dissimilatory N reduction NA Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 15706.0945 5454.5576 29661.9743 2495.7553 66364.0995 4725.9417 8481.0711 114066.375 7100.7663 73005.3675 3756.0332 2784.2833 2784.2833 4945.2703 8476.9504 7466.3425 9638.6304 18899.5413 6864.398 39407.9804 3842.7953 6981.0237 5179.4153 17254.7471 8328.1772 10542.3135 4620.6147 6371.2527 3978.9238 9758.8518 75676104 arsc Metal Homeostasis Arsenic Detoxification Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 244957.1905 2267241.7977 93768.0519 1462619.1021 326071.4922 29225.9545 64836.3346 83874.6437 115987.1217 66087.7804 247548.0641 106132.6938 7158892.7689 190120.3741 108226.4937 142384.7141 148610.3178 148610.3178 308378.9607 522975.1723 69025.9434 167047.7554 483611.9601 117877.2269 177397.1173 83610.9542 211240.8335 112669.2742 382228.8668 351006.8547 195596.3008 123335.203 105040.9102 418658.8234 81612.8336 2007707.7033 223893552 fosa Virulence Antibiotic resistance Degradation bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 16435.092 11969.9561 13462.2958 19130.8871 17799.7641 19470.6749 15045.8916 10179.144 19413.0956 19756.5059 9092.4958 431863.7471 22368.2356 24578.693 13083.34 11545.8937 11545.8937 14813.1622 27363.354 19010.8886 32249.3958 29463.8259 21326.4099 9364.7303 11244.633 25655.9962 8623.8651 36584.2153 21035.1073 25412.0709 10777.7474 12128.9621 15335.3827 11181.5875 23947.621 336004998 urec Nitrogen Ammonification NA Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 49386.6748 16767.972 33538.3209 71955.4168 29433.537 20508.4848 31995.8797 88270.5488 38510.6788 35306.6103 95279.5373 30972.3237 1047746.0294 52951.0512 61633.1403 59066.276 27769.1341 27769.1341 36192.7947 60164.9346 37704.7587 52625.1959 45681.5937 60848.5176 24256.3682 24096.3508 49874.2306 20332.4166 91700.543 41937.6818 61488.8555 21871.7967 29187.1831 35772.5637 23742.3123 60682.2226 254227743 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7982.0596 11920.1666 159064.9823 2257.6334 3496.3696 8302.8814 5152.9352 4827.6155 3901.2157 5869.9786 5379.2465 5379.2465 15610.2143 4934.6611 15940.2681 38723.5546 3784.231 3279.0648 4148.1505 5017.5039 24140.5373 10766.3201 3763.1562 7001.3312 12688.3805 336099797 nosz Nitrogen Denitrification NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 55947.7922 10997.9276 59189.7683 85595.5412 51081.6313 14021.6458 85152.5152 52908.5928 19951.8208 45584.6717 197172.0005 36660.5785 1313936.2313 66068.3413 53582.8865 51946.1857 44589.4997 44589.4997 42063.1358 103729.5352 48224.5752 107979.3532 86062.7947 66213.5623 35299.9419 36403.0596 72531.34 170276.6511 147619.7561 90610.938 75095.8115 45114.4141 44300.0357 63766.7521 70149.3488 60946.0753 83814446 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 223964.2202 90708.1243 107138.9511 71628.8691 79047.836 54597.7083 241324.3088 321660.8228 54896.0549 212855.8162 74910.5707 782083.677 68558.8262 135107.5794 136942.1957 62998.9886 62998.9886 42085.8124 130550.2063 50764.8841 123248.7979 495127.5284 74753.5277 37270.9349 77565.8342 68395.9931 158961.6407 190491.3995 66904.3114 155913.6402 53579.7371 111596.2996 100363.0446 49221.0188 432617.3924 392449732 amyA Carbon Cycling Carbon degradation Starch Pelosinus fermentans A11 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 24655.9342 12795.7628 15624.2953 22708.9817 14280.0956 8855.1527 11596.8948 18097.8486 12932.6656 17094.3343 19359.0123 13119.3767 587119.347 27022.4513 21639.6725 16070.8723 9986.3822 9986.3822 15631.5526 25042.8171 18528.6212 20996.1328 57766.1109 33315.499 9230.3539 17446.3298 21501.0299 9442.8594 40371.3913 13674.314 22864.2746 12646.4789 14894.0222 15878.6071 9368.9131 43437.0471 326638087 amyA Carbon Cycling Carbon degradation Starch Actinomyces viscosus C505 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces viscosus; 74418.0877 13722.4911 81288.2127 116136.2611 175317.1642 64473.513 6030.9651 18017.7309 2517.8282 16875.9023 22276.4532 78172.3432 409866.4651 42282.6798 35066.8667 59563.195 40628.9151 40628.9151 12396.1922 35967.9263 126419.6699 19830.5401 20209.1746 17554.0001 7124.538 45126.0767 90698.587 27037.2938 153919.7064 79232.7787 57805.2642 24597.9204 26832.6359 23513.4605 12252.1228 30157.7171 29652600 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6143.9422 6993.0784 2288.3194 5932.895 2247.9065 9511.4296 7192.8676 5270.5534 91944.1102 9150.5309 7823.9974 10436.0857 2226.6553 2226.6553 7476.8794 11518.8676 5619.423 6023.4991 8198.6515 7927.3838 3208.2494 5565.7042 10366.775 2825.5564 19158.3222 11019.315 9308.5836 6069.6909 5587.5109 5196.8607 5329.8599 6100.7335 77458530 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 11299.4746 11356.7413 6617.9335 12973.1173 12919.8276 13374.5322 8299.4934 42130.0896 25757.5305 13321.6163 14962.6182 295572.8331 14915.1566 70773.0199 10762.6597 15660.4534 15660.4534 5618.2159 14199.4878 18597.0249 8454.4407 18833.3232 12162.942 8503.9443 4366.2415 14126.72 5484.2833 61919.8124 13888.3883 12051.2028 7167.8183 6523.2383 7693.7704 16495.5599 22182.1021 296394858 badh Organic Remediation Aromatics Other aromatics Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 14100.425 9970.8122 14327.1023 10125.6418 14968.1594 5981.5245 6239.0432 13460.0078 10491.5421 5958.7763 136665.241 10329.614 13448.7409 14155.7837 7394.903 7394.903 6320.5231 20667.5711 12475.6445 15246.9352 10658.3674 15389.6047 6196.4512 9626.2699 13160.0558 6446.9613 18753.8716 13642.0172 20911.6885 5838.9072 9138.1044 8383.9388 5215.9681 14151.0116 117188655 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4732.0488 21646698 amyA Carbon Cycling Carbon degradation Starch Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8059.8104 5432.5488 3263.0341 4855.0062 3942.2076 4197.742 2812.1185 76713.455 4829.7963 5427.4989 8353.0404 3057.619 3057.619 5663.9242 7607.0716 4469.2914 4117.8692 6060.757 5345.0172 5318.9756 12398.1336 13833.941 12625.4781 7013.3963 9944.9571 4287.8354 7080.0473 3875.6718 3357.9234 319780165 xyla Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 18772.6914 11532.7626 9496.0678 7388.5669 12116.3251 4880.1775 6136.6672 14954.5843 12997.1547 5982.0792 105562.049 7744.4306 20677.6404 32196.9047 20715.8738 20715.8738 7716.76 20697.3884 16871.8554 42752.1764 10896.3108 10638.5248 5341.9619 8263.2361 25411.1808 14075.1689 32459.1625 22579.9243 18828.9948 7659.043 20999.3346 8023.0792 8710.2752 15048.6412 255519427 nosz Nitrogen Denitrification NA proteobacterium D185 superkingdom:Bacteria;phylum:Proteobacteria; 17592.8012 13276.539 6101.2786 18328.6917 2818.4205 25501.8444 23213.7602 14025.5203 6912.0532 11292.6265 271359.8623 11579.3854 17463.7769 14893.6549 12148.1739 12148.1739 8459.7782 22659.0275 5655.4812 11693.686 16743.4325 205346.4077 11366.2093 23770.7854 17260.1296 18337.5055 43751.2324 9735.2801 20076.741 8042.8584 12834.6847 15756.144 5278.6798 78518.5761 347587618 nbac Organic Remediation Aromatics Nitoaromatics Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 304772.4508 15804.9132 62700.3762 211296.2586 152348.1947 35309.2601 86643.2208 162123.0814 162162.7411 68618.7803 94175.5174 92328.8578 1221695.8332 240081.5413 124096.8636 240573.1605 92335.5018 92335.5018 39159.3483 151899.7619 259109.9757 87124.6251 169969.4555 138292.3893 52153.9517 78285.3854 66142.8182 93389.2152 204642.6511 126171.3533 91902.2864 51532.1448 79287.2402 79867.3213 77169.4969 164915.6348 365864917 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 214574.7435 12317.748 66114.9638 335315.1593 68629.4472 22344.3868 23620.4684 47994.3873 36323.0931 50834.5893 61471.5222 79386.8116 1299678.7316 120371.979 374463.7971 108323.4027 67609.9384 67609.9384 43271.4635 84958.9452 36712.5209 38818.4737 92331.5171 37273.2258 50295.8629 40622.4923 93782.6974 49553.7911 207785.4613 53032.8703 241778.4021 38051.9817 61890.0799 70366.6637 50365.827 61465.1413 302897214 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4014.7723 319418655 nosz Nitrogen Denitrification NA Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 22877.4145 18505.3986 24581.0575 25469.7804 6915.415 42731.9037 11331.5014 12418.9308 23696.3737 28922.3153 65681.9111 492857.5838 78329.1489 22459.378 47374.1079 147204.7288 147204.7288 14149.0566 37922.7272 18909.7845 29275.2183 41912.4187 31407.7863 13908.281 29124.9525 28618.5891 12619.7063 52587.4798 24855.5077 27343.1303 11322.1217 20117.5588 15757.3692 12990.6587 41828.2671 78102077 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13388.1391 7446.8138 16673.2341 152562.9654 8108.2313 8033.3077 29018.8425 13144.3388 12683.5344 5153.4545 205921.6958 12062.3171 8844.6702 9386.6465 6417.2714 6417.2714 7892.0403 17221.2557 13053.2876 4692.0301 13384.0221 53169.406 4197.614 28406.3396 16142.9069 5695.4185 50706.9693 45442.1136 17984.801 12703.232 8638.63 9188.6863 7898.767 18643.1669 386382313 amyA Carbon Cycling Carbon degradation Starch Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 106263.3896 40956.8623 10487.3559 14340.1373 6108.5613 18890.2026 13618.0227 20527.9318 22334.3987 63029.2654 25395.6011 234417.0423 16247.6222 39757.68 73789.8339 31741.3813 31741.3813 12887.5972 50285.871 13970.4718 23144.6882 61744.8369 27964.3829 21650.5589 16250.1875 30995.8271 16660.8322 52375.4824 18586.0586 33792.0786 10044.4153 17420.1132 24883.4969 7665.9958 21788.2217 326693579 ppx Phosphorus Polyphosphate degradation NA Leuconostoc argentinum KCTC 3773 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 22080.1302 10416.5121 12230.9255 13748.5166 9925.7838 51837.0405 7685.1214 12309.7625 9115.1301 5937.4037 398614.2076 18006.0487 14488.5193 13755.2607 8517.5207 8517.5207 6263.813 18651.9124 8415.0485 13566.8883 12028.7265 13740.1529 7253.7357 6696.3163 14170.6156 9383.9779 20656.3148 5258.0829 14610.9 5247.6362 8823.1399 7455.3432 5490.8684 14313.0716 403649527 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 80462.3946 31320.6844 45559.9957 305876.3364 64206.2123 22665.5724 58897.0038 458640.3719 42511.6479 49992.8875 98826.4834 36353.4395 1765313.3348 155107.1285 77111.989 74249.2851 384975.1474 384975.1474 52231.7142 89384.4271 74503.1188 65501.5496 75270.2565 97405.4298 39983.5879 41981.3918 71062.8551 36017.6135 140457.0893 79956.4178 78318.31 38808.8006 42097.2019 52650.7352 50388.8443 89402.0871 194719498 chitinase Carbon Cycling Carbon degradation Chitin Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 14407.7396 13454.5116 28611.3701 5457.7045 5576.3576 9035.8369 16234.4967 9180.2893 67398.7293 5872.8698 4238.448 20243.7215 8128.8077 8128.8077 8744.3568 14935.7607 5769.097 9640.0595 55614.1728 4482.9168 3299.678 5953.5417 19350.8536 36387.0821 12659.6459 9170.5647 5548.0271 4851.1923 7819.3941 8488.001 8404.0159 134081268 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 15101.4026 62958.9121 7530.5228 19819.8668 9160.9504 10002.5019 58595.833 20616.4205 15333.9776 23962.1567 205394.6455 31033.3763 17276.5772 35936.9855 20621.8029 20621.8029 4939.7215 15926.1522 12479.101 26137.6809 10206.9342 12682.9986 5506.2955 50056.5439 22940.0762 8284.6447 31032.8958 17480.3583 17052.7285 18183.7751 20151.4142 15151.7072 7468.997 9505.5792 375056864 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9444.6745 10498.654 3527.4058 3932.1889 178210.618 3305.4319 3916.7214 3173.7647 96134.5892 5228.2539 75386.3866 3114.1932 3114.1932 3492.0641 8753.2921 7033.5118 3777.4116 5295.1216 2147.981 12049.3305 9750.8023 2903.3257 11159.7533 4193.0575 7940.9081 3448.7791 4832.5065 16376.9373 3474.3664 5651.8621 254486221 cmci Organic Remediation Aromatics Other aromatics Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5561.7931 17892.1559 6325.9797 15665.2104 18189.5545 10238.987 3992.2005 4565.657 6532.0325 6850.2978 125058.359 4514.3683 6902.477 11758.8118 111135.1986 111135.1986 3413.6786 8472.01 4933.6865 3865.9924 4993.8895 5028.0747 5707.5525 13865.8478 13563.4269 37834.9095 11340.7651 14783.8698 9334.9364 40288.7267 7965.139 3382.2497 6978.1826 50837707 exoglucanase Carbon Cycling Carbon degradation Cellulose Malbranchea cinnamomea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Malbranchea; 7021.8286 18373.4054 11211.0644 11265.7336 13933.464 5465.7773 6881.8228 12149.0674 114544.3288 6576.2294 11373.6324 9977.7271 26550.3358 26550.3358 25024.2051 5561.8821 4240.467 6608.8941 8654.356 4885.5197 15053.9148 7018.7984 12192.8535 16769.7666 4712.8349 9962.1549 3520.6431 14078.847 9729.8242 4884.32 74713.4106 333991327 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 22497.9339 10754.176 6345.9969 14434.1905 10508.8366 8626.5021 12768.1242 94051.7129 13751.3401 13880.6674 15034.1744 405220.8927 10480.3071 43540.1584 30377.8064 12831.5076 12831.5076 8499.1325 19962.0487 11298.572 11653.877 17639.0895 6198.0696 8008.2376 13848.0882 15591.9315 13799.4058 19167.8106 17798.8156 17559.1296 7133.7909 5523.1122 13034.9149 4997.9137 15053.8251 178925573 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 37398.3768 16400.6511 13966.6908 6544.2115 10480.16 18219.8237 11161.6826 17967.2356 24025.1117 12597.5053 428862.4777 26667.9435 20242.1614 17859.3054 26828.4771 26828.4771 25955.1886 49511.1486 19440.3352 34246.891 35491.8585 34851.6174 12271.0143 11689.3317 25373.0673 11084.8118 38950.0841 12194.6517 24085.4645 10265.8753 16393.7939 14796.9249 11641.7175 26563.6494 169620535 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7775.7512 13045.044 3172.7344 4490.665 8243.7213 8639.3823 5959.2106 190703.7442 7165.2016 9692.7038 12949.8312 6952.7794 6952.7794 5219.3647 15029.5172 10140.0473 5127.8579 8630.1803 14581.7422 3918.1284 5502.3974 9986.1672 4465.0232 22728.9595 15299.9324 16952.4838 4039.1563 9144.0387 8907.7224 2972.8016 20088982 ppx Phosphorus Polyphosphate degradation NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 8170.2553 10217.477 4679.6358 5816.9447 2989.2056 6216.7397 5539.802 3394.8979 108589.4814 6926.9533 8384.1834 9243.7055 2947.9694 2947.9694 4245.732 8541.4671 10757.4754 6838.1831 7795.7629 5576.4352 3151.9178 3817.9327 9562.6772 2812.3626 16220.7386 10512.0952 11576.6818 3183.0706 4252.3287 6547.1235 4194.3359 10402.7165 118462569 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 862279.5875 86181.4018 109509.3755 1179256.2671 260776.9405 248241.6325 271937.8695 245619.7679 259520.9101 168915.8719 372599.1603 182257.8882 7298497.091 511952.8502 306707.6191 363168.3928 252903.7454 252903.7454 101564.9138 241353.329 162495.8764 220764.7924 183724.3352 226288.5682 115158.6047 123062.5339 383201.9773 187860.5079 525694.9251 266893.9911 282576.4751 131378.8874 167713.6641 226849.9351 150742.8023 309602.7139 167594305 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 25869.7705 15098.8089 13907.2081 2744.1395 5780.9068 7274.8902 4811.393 72415.363 6276.0912 10880.2089 31528.5837 6714.6969 6714.6969 9172.6093 10822.2827 5905.9626 9553.544 8227.6482 7919.1652 137037.6715 8530.947 6857.7362 4611.7298 200591.1034 9510.947 13259.7664 5841.9181 6370.2721 10838.6435 2317.394 8659.6049 158316921 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 346149.0747 31140.8321 70227.8228 8253.4834 566002.2485 4568.6539 81526.4416 47950.2487 38804.8968 44993.3806 33924.3044 15698.8907 273720.7741 66940.5652 29279.8846 54386.3794 21346.443 21346.443 26972.757 29080.8097 16196.9532 465364.3277 14844.5263 18791.4489 12327.4401 21504.952 17817.0562 20581.4966 290449.2945 15880.9263 29290.2669 43074.6233 29411.7127 33997.6276 12514.7386 363910.2486 300446031 dsrB Sulfur sulfite reduction NA delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 4318.5807 4741.4168 7327.2032 2822.9867 2822.9867 6664.2894 3148.069 5363.6166 7360.015 334124390 nasa Nitrogen Assimilatory N reduction NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 7443.7044 11947.024 10563.2894 3289.6847 7883.9712 58629.2506 98222.5654 121881.5257 8727.3432 11277.2994 8491.6374 24516.4245 24516.4245 6333.0573 10338.7952 8464.7615 13178.8861 4911.8754 3561.598 3453.6678 8611.232 14230.3384 12374.0534 9389.947 27332.8147 2823.0846 9999.4758 5586.5866 4842.3012 296843788 chitinase Carbon Cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 12493.8254 6681.5959 33317.9703 9119.1905 6113.7462 7030.2741 7911.9937 11709.4624 6328.7703 222000.945 5274.9073 32875.2869 16087.6394 10212.3887 10212.3887 5028.3916 15088.4421 7049.1641 5497.8506 25173.2299 2624.5498 8861.1473 13544.1888 3021.6632 10521.3923 13824.3772 11306.6845 4310.3203 6151.8148 8010.845 2747.3381 332681522 xylanase Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 7668.2087 6170.7151 3491.4284 85868.4155 23000.7484 19508.484 8316.5048 2606.5976 3750.9658 10932.0789 3328.511 8321.5346 296118184 ppx Phosphorus Polyphosphate degradation NA Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 10822.9387 13807.228 2603.3125 3533.1019 11111.8856 7571.0325 14929.0117 3751.0851 132999.3084 11477.5459 9912.528 2938.0389 2938.0389 3868.1031 8257.7406 4573.9238 12628.1838 35235.4305 8318.6182 4174.7682 4840.5473 12767.2481 6755.9593 16883.4408 7127.0933 9688.2258 4853.1471 6336.1038 6181.0374 3319.7334 5133.2691 270284397 xylanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7853.4945 9681.3241 8347.9 8309.8192 12199.6566 7235.3827 5295.3482 11310.2547 15788.9532 3992.3779 235864.2809 14474.6425 15015.9449 10803.3253 5983.4884 5983.4884 7351.7853 25477.1816 17086.5926 16565.2292 17294.6613 13208.4278 7158.1473 6404.9841 16876.9035 7325.9012 32556.6127 13598.5229 21231.8388 14284.6145 9006.9877 13490.6687 7642.8049 17468.2235 116197288 p450aro Organic Remediation Aromatics polycyclic aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8871.1042 17430.5145 4113.6001 6157.2541 2365.7627 4211.974 11236.5174 2985.17785 13679.5608 3820.77705 3820.77705 3823.5345 12264.2998 4594.2575 11009.233 8432.4084 3915.2755 7587.8702 6658.0212 3246.7694 10844.2466 5141.3016 16100.1022 5997.3892 5667.1585 104721.4261 392971644 terc Metal Homeostasis Tellurium Detoxification Staphylococcus equorum subsp. equorum Mu2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus equorum; 6040.6082 2964.7695 4913.6747 5291.5231 9492.5125 92001.4215 7404.0912 6121.3851 5014.9501 5014.9501 6267.18 9312.8068 5517.8093 2265.9026 6390.1116 2581.929 9417.0865 5661.6214 2359.3567 3376.4646 6118.9142 6303.3307 338837122 cysJ Sulfur Reduction NA Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 306741.5808 14089.2811 476814.1757 215067.2689 191632.9307 30146.5802 194215.5315 555501.3886 231821.6203 82897.7714 215388.5905 147325.0695 2172478.8802 163353.7274 240342.8264 391399.1854 182680.6484 182680.6484 65161.3564 139295.8677 127729.997 178835.8173 327241.9295 297786.9926 105073.6507 79840.7356 118163.3752 57203.2835 226918.8082 219960.0728 245864.6141 55928.682 107626.2732 130233.6822 95832.1102 205653.0028 326803113 pula Carbon Cycling Carbon degradation Starch Aerococcus urinae ACS-120-V-Col10a superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus urinae; 5387.5455 53836.5845 5227.2452 3249.0903 6788.5406 4508.1201 32067.2181 5988.7801 4915.9119 2094.1915 2094.1915 3044.501 10103.7937 7240.7195 6630.0762 13330.8331 2410.169 3701.9301 5827.7959 13617.7079 13368.0613 4769.5033 7120.9008 8764.9859 6179.085 9087.3813 2785.733 18389591 norb Nitrogen Denitrification NA Roseobacter denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 137423.6929 137314.2867 16889.999 59626.7356 13864.4891 18929.7741 10755.3925 64214.7766 14835.9021 255146.6453 19772.9752 66545.8678 11407.4384 17606.4987 50372.4308 18192.6988 18192.6988 11522.3717 84168.7879 15298.1503 14694.9728 22860.6563 16181.008 5159.2966 13713.2373 45459.0478 13571.6389 25138.4585 34357.4008 34111.3864 15785.7358 15971.8049 33249.9282 10031.6736 13888.1312 222432079 cox1_Viridiplantae Other Phylogenetic NA Lobochlamys segnis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Lobochlamys; 17825.9586 56798375 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 61226.2259 27683.3443 30044.9674 141262.4781 9805.8057 101401.8156 71935.4057 30560.0809 43720.1487 113187.4591 29364.8709 757905.4015 60824.8411 55227.1269 58874.2145 48959.8709 48959.8709 27326.0946 99177.5503 41562.1542 70258.8869 64988.435 41771.2522 29344.5518 37256.2603 40767.9178 52797.8582 141898.3148 47495.51 60383.6682 44870.664 41256.526 140631.4066 33388.9536 101505.8449 259652647 TIM Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 96232.4792 30246.6652 51435.3801 128266.5576 53901.4517 22737.481 106474.0903 30907.568 91951.3932 74159.4842 73526.2453 1279018.7526 86717.7606 69705.1533 64628.7971 74628.8938 74628.8938 34113.8378 77056.6031 36637.9528 37101.8552 87766.9899 67602.908 96695.1289 40489.8939 78431.5511 15179.488 147522.1957 66980.927 59044.9756 25738.2548 31358.2821 56843.4751 25406.2697 59658.6798 27351342 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5130.7009 2779.1149 4926.3314 3296.9166 3843.5836 5294.2397 11921.8205 85050.1279 5741.0977 6124.1609 3266.9348 3266.9348 5682.4354 15525.8801 5942.8372 10281.7343 14020.4332 10496.1225 2926.7392 4073.188 20811.1326 14796.3245 11252.5877 8942.7142 3683.3688 4500.9437 5757.6166 2486.9455 5849.7547 158251624 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 94853.0057 11059.8946 59413.3582 11242.9085 19666.0716 13386.6176 16601.3211 19421.332 17825.1716 18524.5226 70650.5324 17284.8776 643491.2893 38320.2247 26308.6415 23225.5451 30745.4258 30745.4258 30166.4373 119306.3694 23694.0689 29295.8047 52826.3643 27324.7152 21051.3251 17238.5859 33616.5268 60451.6116 59706.3928 31199.0094 53897.1678 13402.6396 46089.2712 37664.1091 17950.6058 45031.4477 258556198 amyA Carbon Cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 8466.2046 28797.3359 8258.6039 15107.1524 7381.2172 2624.485 2303.7556 6924.152 8373.0071 13537.2187 6124.7376 172368.3776 10329.654 20534.3195 133721.6946 3122.8006 3122.8006 4931.4585 15860.6948 7764.4898 255054.3011 10840.8557 9435.7917 7927.4199 8091.9299 9797.3003 4052.6132 35005.9312 4701.7823 9808.3746 5200.8033 8721.2582 7457.1695 5432.225 10226.5288 85698799 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 10747.8755 15900.6369 5262.0852 41245.9175 62500.0233 7746.8874 6072.6032 2260.3982 8051.813 4114.0939 4433.3437 9784.6876 260432808 napa Nitrogen Dissimilatory N reduction NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 9043.6717 5573.6293 15649.8602 13201.7014 5629.9132 10315.439 2601.829 6983.9367 8750.3695 34591.0252 279168.3394 12934.7444 12022.5063 12753.5138 11195.6237 11195.6237 8658.9662 8800.895 8153.2062 6801.2011 17591.9673 10987.6648 4670.4781 8373.2776 35428.9063 9633.485 18621.4368 6517.0569 17028.6585 4890.9663 6475.8313 13604.4443 3423.2577 6579.8464 326551944 amyA Carbon Cycling Carbon degradation Starch Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 14016.6417 10979.3281 4645.3787 9610.2907 8452.0429 6412.0247 8334.6329 5649.7946 13400.7496 10999.06 5679.6781 207040.5898 15428.0272 9494.3068 5563.9218 4637.7307 4637.7307 27025.9557 16789.7997 12703.3288 1588946.3291 10472.0284 16554.3774 7360.8271 7723.2372 14782.764 5754.7125 25920.4335 12657.4917 14908.009 5712.3655 7069.3997 6905.9887 6565.8401 18592.9287 389794768 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 9845.275 7225.6467 13035.2832 3699.6557 10117.434 4889.4163 7997.0862 10319.583 4448.5001 130477.7292 13124.2147 11278.4337 4922.9403 9252.4084 9252.4084 7636.6184 16008.2184 6996.734 10163.8207 17292.3221 16437.4704 4638.6632 4438.0088 10877.9661 5178.7229 16992.1558 12480.1774 14409.7952 5881.4398 7436.5657 6951.2465 4468.7056 14064.5318 299077770 cysI Sulfur Other NA Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 59548.8366 24194.3405 130300.4756 23799.2818 28997.8558 20151.763 35996.3711 71401.157 27655.504 66669.3475 679101.619 24466.4209 68938.9744 24783.1959 28052.624 28052.624 36116.5912 94105.3652 16590.2826 52044.0891 107584.2644 28382.5928 19921.7199 67774.4544 18410.5414 53984.0246 111875.249 70728.4561 65129.0406 48504.5655 36121.6102 30895.0621 39909.4842 47062.5587 254947212 xylanase Carbon Cycling Carbon degradation Hemicellulose Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 231078.9139 7694.0668 5619.6375 3280.5 11945.6959 9431.1716 12496.8631 13255.5144 12916.5208 81045.834 29280.5279 13825.8273 102963.3562 10666.7355 10666.7355 6506.6224 22087.7314 9219.3298 10771.8677 13366.7503 9730.3355 7451.1608 15630.7789 8455.3066 8814.2612 27322.0491 15184.8609 39842.9191 9257.3151 26045.7127 9384.8621 7245.9834 8210.7017 29466006 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 287528.389 20178.9984 124131.6473 91649.4694 89570.0137 60930.6864 66858.6419 167229.4025 85603.5855 93506.7492 158465.8617 160671.4737 2866652.4795 147696.5275 140259.4283 214722.6788 153674.5906 153674.5906 214451.2298 175770.0712 71573.0393 176991.6262 183150.2866 115765.1806 72651.2582 94405.8833 71369.1753 52199.8521 269248.5291 45375.9538 160203.1823 42226.8052 205729.9273 188022.9823 89136.3176 233334.4242 193244817 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 251485.3643 54944.0102 216409.9238 235185.1789 73450.2186 50940.2449 200758.1839 383164.7736 262128.2785 416922.9748 230101.695 170395.3589 2055832.4667 185882.8427 262406.4925 283116.5801 392894.4042 392894.4042 180485.8955 320574.1989 210802.4905 439739.9214 309890.9151 311149.8812 211957.5339 289717.1135 145088.0482 161464.7019 396006.323 186084.4477 195795.9529 175491.1135 199541.9265 265828.8492 221282.4633 808160.871 340795318 narb Nitrogen Assimilatory N reduction NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 37560.5464 33716.0009 9884.2963 16737.6852 5215.0845 72221.5895 27621.304 55495.9086 16517.1078 33281.8551 32467.8485 370468.9149 38401.3146 42730.3418 21853.2762 37928.3328 37928.3328 55900.3783 37248.4138 37735.6981 26974.9 71338.3834 29574.0166 17918.3858 57354.1449 83246.2839 46912.2359 69797.2088 56241.7429 43377.2911 29548.2517 42267.6332 33863.6576 20988.441 42479.2487 365857089 xylanase Carbon Cycling Carbon degradation Hemicellulose Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 10395.7218 4988.2164 3897.7691 12941.0129 11054.4367 3750.1736 7525.9799 9072.4464 5387.6144 8733.3403 3334.9111 157136.4603 7469.7388 12488.3071 12100.2501 7498.2968 7498.2968 4567.6374 12838.8095 7502.7625 6856.3416 8235.5825 19034.1095 3795.9909 5944.4128 12653.185 4378.7474 76396.6246 8455.5775 11642.2026 4228.7266 6929.0878 6777.3679 4832.4245 9229.8905 111020867 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6102.3102 5859.7685 25189.3072 9247.0653 5498.2759 22119.6393 7097.4267 5891.8541 9749.911 4921.9393 176341.1103 6442.9434 18657.0962 20230.2891 10970.4468 10970.4468 2727.0272 14728.534 7832.1686 13195.9479 7124.4212 2960.2323 5115.1589 13322.8269 4185.5638 22248.9225 12219.1508 11966.9961 3128.659 5324.1657 7045.8687 3299.4042 5675.7638 310941375 linb Organic Remediation Pesticides related compound NA Mesorhizobium huakuii subsp. rengei superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium huakuii; 1065322.953 62043.4591 775891.2493 73483.4868 210561.1183 266435.0186 60330.7052 153515.5672 83508.2274 131011.9439 572864.2213 120225.2614 1907165.5629 98363.8472 123327.047 254116.4315 183604.2253 183604.2253 116094.2051 143828.0191 76412.8155 204589.2284 230331.3842 128278.1697 244166.4722 96620.6743 144204.1481 83191.5732 221785.7543 154134.752 194514.0287 50514.1342 119817.3548 97253.0098 37182.676 281981.6446 115260385 linb Organic Remediation Pesticides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5408.4389 3950.8402 4000.5662 2393.0607 2973.8606 7004.6275 2093.8678 65626.9885 4410.8275 3332.6371 3332.6371 3397.6228 7058.213 5262.3222 6495.0912 10830.0573 5674.313 2374.1322 8980.9069 2476.3478 13702.6046 5707.1036 6772.3876 2575.6113 4042.8865 4355.2439 2896.2133 6293.6383 299776249 pme Carbon Cycling Carbon degradation Pectin Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 4084.5639 260695.8392 44293.076 4789.9386 4868.1799 3445.0238 4300.9839 4874.1023 2643.7338 265049.9656 6712.0314 4955.3514 4834.3918 2747.0813 2747.0813 2742.5252 11247.8947 10847.4995 38996.8365 6041.1245 11949.3887 3860.4442 3529.2893 8959.5021 2700.2484 15009.73 4875.9868 7842.9664 3592.8015 5982.7152 5172.278 3864.9129 5403.9765 325673343 badh Organic Remediation Aromatics Other aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 10740.3309 73394.9621 6741.144 18503.5084 5766.243 5559.9684 21556.1181 3391.6948 10748.3924 70580.2636 6641.2974 9505.5222 13869.0571 10134.2615 10134.2615 9834.6382 43549.0358 4200.6195 12732.5184 23308.1452 27488.817 9614.536 16592.2635 2801.0007 22213.938 6514.2229 9528.3952 6849.5017 7537.1165 9184.7761 4460.2755 5708.0928 33635177 ppx Phosphorus Polyphosphate degradation NA Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 5171.6064 13076.1227 7636.7967 3824.0462 4769.6202 11772.1592 5253.3794 2785.5474 126577.0414 6069.1381 6701.546 2918.9485 2918.9485 4625.6165 10387.4859 9419.0185 4976.7667 5270.0872 8673.6477 2933.9438 3453.3822 6623.6221 3611.9039 21049.621 4375.0604 23486.6587 4244.7143 4672.9843 5063.5552 4246.7693 6650.6529 227548770 amyA Carbon Cycling Carbon degradation Starch Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 236867.8096 244174.7107 19044.8118 226125.5996 76696.5885 17857.8977 46124.9495 18836.4789 25327.7389 40753.7685 27536.9543 464661.4663 801892.6522 48168.2883 45180.747 31616.7581 31616.7581 29839.9256 58633.9416 32362.9545 15554.8687 24824.1374 48717.5922 36729.2029 22731.602 81693.0142 19998.5475 276394.219 63635.0774 46723.5857 12214.0814 36109.8677 41770.39 46544.5405 28326.7004 224027921 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 56127.0851 24696.6575 27138.5567 75772.1062 15458.5997 73539.3351 170502.9769 78063.5082 43807.0212 107036.4131 26866.0241 663230.8849 56851.1685 53901.0637 73464.6531 34989.5024 34989.5024 22511.1019 108322.8675 33771.5531 50519.9619 75278.9625 59552.4132 17100.586 50410.1086 257717.1696 74162.1011 206558.0578 173884.8757 54197.0795 27408.4053 44289.8347 58816.6677 105063.6768 55165.9797 159038731 chitinase Carbon Cycling Carbon degradation Chitin Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9843.5429 13991.8459 12885.8745 6009.6975 4263.004 12394.1416 42330.6967 13335.584 86600.087 8736.4104 11310.9583 10361.6389 10361.6389 6837.544 12276.2982 13216.7364 9174.9146 74036.5536 15930.4436 5167.7236 3575.9344 11345.1793 7171.7102 18477.8817 10221.3458 11139.6478 9770.526 7662.5982 13858.8262 4830.4848 19368.5002 6624274 bphF1 Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 7995.4232 5118.4596 4349.0256 3886.5092 7055.8921 6931.2399 3389.1471 97933.3165 8294.2516 8415.4688 5296.2935 2609.0909 2609.0909 5407.1115 12048.0315 10751.9905 12991.6461 185522.646 9162.1542 5322.009 4433.5594 9926.5758 4380.8047 17631.0773 9864.5863 12791.6982 7621.9038 7318.8473 7462.4874 5543.132 9860.0437 83838572 phn Organic Remediation Herbicides related compound NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 17510 12722.251 7644.6546 31712.966 72488.8401 11894.1386 13261.2174 9902.4504 3765.3453 8455.902 15306.4233 23268.6553 253710.2192 63462.6842 11321.4395 11021.8291 9812.4197 9812.4197 9837.1818 27803.1302 17410.9014 14128.6237 19797.9476 18247.8561 7679.8955 9846.1456 30974.2763 10960.5351 45688.5888 27263.3574 25195.7234 13013.782 12322.7874 8722.8528 8712.9215 30878.6429 222440339 soxY Sulfur Sulfur Oxidation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 5396.5008 5550.7014 25051.8412 6049.247 4400.0335 8474.3152 6727.862 81695.8427 65324.1787 5368.3888 6181.627 5016.7715 5016.7715 4764.5235 17473.9876 5155.4555 6321.3254 9860.6728 2471.0596 3164.7928 11634.3866 2621.5745 14800.8331 10788.7707 6143.8195 4584.1802 3730.9123 6948.521 3848.2479 7299.2835 308737201 narg Nitrogen Denitrification NA uncultured prokaryote 17458.1365 12407.5595 16613.935 12658.9972 8320.411 9353.0224 5194.2926 13052.0572 15419.694 16767.2816 239572.1883 13701.4826 15955.6945 11165.3733 7126.0443 7126.0443 9676.3479 22251.3098 17931.9185 12859.5828 29402.7214 24415.3336 8127.5086 7925.684 17013.9383 9957.4097 30953.7539 14857.3772 20408.67 7609.2078 9773.3104 12286.4933 7179.2459 19739.8412 55229273 mer Metal Homeostasis Mercury Detoxification Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 4444.9361 3439.0898 4000.4098 126610.4911 6011.0569 6563.1098 2044.2164 2044.2164 5655.3427 4353.126 3886.1012 5212.4847 10297.7693 4423.3904 5667.5059 1971.0877 4890.098 6804.4303 2266.3357 262084342 ppx Phosphorus Polyphosphate degradation NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 71300.644 60211.5568 18116.0351 47581.7211 5503.2776 50110.1367 41406.6854 16620.9312 26759.9994 34096.3962 51654.8375 978127.9881 75781.1262 62041.0681 31042.6228 39324.9341 39324.9341 29195.1786 63844.9795 33076.3269 51671.5959 74205.2913 48325.0515 21254.6093 32818.6707 63188.684 39027.21 133900.0897 55661.8641 50339.6868 16558.119 36492.2269 41149.6003 24968.3027 91125.4932 319414051 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4040.5293 3144.8448 4302.6514 36153.9879 3659.1099 3099.6726 146597.2233 4853.5236 6082.047 3223.9907 3223.9907 3523.5628 8931.5651 4838.9284 21315.1179 6674.2132 2737.2491 3267.0068 5960.7324 3201.9254 9098.0064 16771.5702 6726.7989 3671.1122 2739.5084 5210.6642 2759.1006 9047.5936 221534497 cysI Sulfur Other NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5577.5495 11576.2706 417337.6307 4994.0988 6332.3475 3460.9974 12317.9084 7614.8971 103194.3382 41614.965 7149.1025 4000.4463 4000.4463 13813.7425 3821.1234 28048.4476 7305.0477 2310.0341 7986.8581 6042.5758 3526.7689 17131.8964 227983.75 8167.5502 5109.4783 5113.5581 227832909 amyA Carbon Cycling Carbon degradation Starch Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 11243.3719 9513.7965 14669.57 29042.5219 9476.7214 7617.7647 5592.5245 2797.0346 7569.9889 9624.742 6345.0396 189744.5759 14333.751 11271.0389 9656.8753 8294.8018 8294.8018 7888.9018 17302.9564 11946.7872 10052.2521 10813.5838 12047.8412 7167.2113 7195.009 18999.7331 6284.5035 22816.6929 17673.8812 17846.3365 8203.7792 8820.0655 13244.7367 4852.4342 21614.7651 295422879 PRI Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium fabrum; 114775.5937 22775.8773 41681.6579 332018.7054 71930.3151 27847.6608 91261.0852 110758.5905 41528.0009 43436.9456 35171.3165 895177.0644 62997.5895 60162.2079 61575.7501 112426.8311 112426.8311 24901.9092 93573.3275 99071.555 30805.359 58595.5688 83884.5756 54348.553 40500.5765 418071.2337 34033.3371 148919.4208 62768.1355 63033.2935 21622.886 30897.7668 40263.0563 31822.6368 57564.112 84787703 linc Organic Remediation Pesticides related compound NA Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7399.4102 9576.9928 2410.5971 4603.2817 8306.732 4739.5519 1158298.4237 8281.3597 10546.9176 4278.6589 5456.1544 7240.3947 2958.3464 3494.4429 7555.5336 4681.1497 11346.1337 5432.6149 15059.2235 4780.6961 5774.1417 7815.4715 4104.3021 12416.1348 336179640 amyA Carbon Cycling Carbon degradation Starch Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 47508.9126 136036.431 18845.3733 16502.6669 9692.7371 17938.7018 90759.3932 76878.0573 77168.9799 16587.6074 16360.6047 229662.4465 12693.6549 12326.4519 15801.9438 11377.2194 11377.2194 11516.739 31372.4572 24457.9736 167653.7922 107275.48 19430.1092 17032.1179 22709.68 12370.7176 21335.323 58508.3108 12962.677 23315.319 10490.3696 15649.6761 15936.632 14931.3026 37344.7785 346975888 axe Carbon Cycling Carbon degradation Cellulose Verticillium dahliae VdLs.17 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium dahliae; 935715.3688 321614.2804 124338.8782 174639.7302 132270.2262 67818.4809 592708.7839 96310.6788 84680.3776 125139.6556 112619.7764 71531.7489 2827117.5372 159692.1593 129788.5526 229436.6448 164093.8434 164093.8434 69265.1515 164567.5275 84866.1258 110587.4247 985275.7285 137390.8023 169279.5689 55811.4166 139024.7699 51603.5055 204305.0734 114345.2779 130721.4833 74842.0872 66519.0537 80897.2165 51198.6262 126187.6241 194337821 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 26141.707 16182.3676 70540.5951 8622.6531 40671.6606 16537.8859 14139.355 7456.2758 27583.0948 32102.0927 23937.433 376298.1621 51512.0269 15393.1399 20792.6471 17534.1024 17534.1024 40749.9388 39653.5146 16424.9189 32941.5134 22973.6968 24928.386 10884.2975 21324.2248 100022.7232 12840.1838 46649.5159 30405.5301 80098.9686 10345.6594 18893.7883 32041.8041 12833.9297 32804.2933 29652552 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 65610.9134 33308.576 72146.7734 90453.4156 59034.6591 15363.8673 37747.1234 31806.4873 35633.6146 42480.9024 46978.9574 32313.6034 975064.9706 55133.4869 68830.0448 56600.5591 22794.1233 22794.1233 30497.7926 59578.1896 37742.3123 36645.7913 51488.2947 130463.6059 26655.0118 35894.9642 46550.1186 28612.3162 74431.1918 59866.8383 62787.5341 22685.7115 31340.663 61825.3365 37252.867 78096.7252 124266112 msmabcd Organic Remediation Others NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 14497.796 47769.1923 7028.417 8243.6923 7481.8128 5428.865 26880.7224 10980.2584 9320.6784 151873.6047 11243.3524 15599.9871 5685.905 12606.3734 12606.3734 4088.1041 18799.0798 8441.8858 10579.4381 8927.1639 8231.9777 9653.2896 9734.1172 15453.8787 15021.7429 26770.3827 21466.5683 14746.7428 8263.1351 7733.7787 6527.1531 10522.4448 19696.4457 347757807 FBPase Carbon Cycling Carbon fixation Calvin cycle Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 6014.4036 7489.4114 2398.1749 4269.3482 50478.6706 8149.3677 168290.0478 2775.1352 2775.1352 6606.2283 3840.9174 3823.7818 3737.2583 2821.1387 2687.1329 9051.8713 8265.3994 2936.3315 4309.1436 218548666 nfsb_2 Organic Remediation Aromatics Nitoaromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 10125.6739 5495.2256 18548.2302 3023.7203 4483.9629 2502.5931 7910.1633 4457.211 3067.6272 105440.7813 7776.8781 9055.3441 8441.6152 6528.2396 6528.2396 141130.0401 12909.4516 7595.7168 5395.6969 13085.8908 4343.2417 4510.9761 9447.8783 5967.1024 35354.4684 8358.3957 13624.2045 5672.2002 10295.5206 5015.4974 2297.7518 10348.4214 152980222 tktA Carbon Cycling Carbon fixation Calvin cycle Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 16296.9117 43123.6151 67829.8809 19854.4203 16387.3437 9912.1291 13003.7589 20869.0321 17620.3943 6564.3014 256188.3563 17559.4345 15454.8304 12428.2927 6209.6153 6209.6153 9715.6142 22575.6669 17858.6908 15671.8963 25288.5678 25282.1297 21789.5944 10283.5777 18777.9392 8012.7261 36790.6872 13017.0884 24295.2869 12123.8487 12397.8656 19526.8592 11183.2643 26288.1446 126235478 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 13801.082 4715.7763 25400.1916 2192.9012 6331.6329 2601.7277 153565.5114 4669.7774 18971.8437 230332.7074 4120.1585 5239.7003 6341.5258 6341.5258 81330.8821 10607.7686 6998.935 3766.4882 2461.7748 3630.2082 93290.0593 8240.9507 26899.815 5276.6071 8060.0141 2290.227 10585.1153 12092.1713 80941.8974 5219.4289 299766924 glucoamylase Carbon Cycling Carbon degradation Starch uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 15198.5064 2290.1133 4033.0577 2443.8567 11151.0861 2562.9869 2562.9869 10741.0256 6045.6434 9956.0745 11376.2493 4176.5348 2993.0354 3970.2159 12135.7115 9957.5405 8732.7735 3622.183 5637.3029 2992.8725 10175.7574 334129588 TIM Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 156018.6455 94774.7482 216780.3095 99496.3202 144565.4291 74730.9672 101399.5796 265641.9588 183887.4914 113368.0848 190963.8704 139278.8682 2479528.9637 167969.8819 208392.7852 212359.2472 208377.7284 208377.7284 81271.8029 156348.3717 130869.2546 140874.021 251708.3825 158786.2578 145383.4297 94417.9238 160477.5657 103024.7439 245255.5808 245002.2126 159972.3704 70312.0674 123616.1549 126592.512 79765.0344 258488.3321 394453024 catechol Organic Remediation Aromatics Other aromatics Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 20802.7372 6091.0447 7242.0435 2670.2683 4696.6357 8199.7916 10750.1435 5039.3629 172724.2313 9625.1298 9353.218 5675.5039 3961.9386 3961.9386 6601.0434 19376.1584 9807.925 14879.2305 18475.6458 11390.4882 10713.8004 5415.0251 13882.506 3534.4636 23152.462 15489.2896 11107.5351 7341.5542 6382.6067 9013.9057 5236.1059 16888.0986 167348367 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10386.6818 17808.1174 8859.2548 32002.9083 3824.8872 5324.922 5772.7017 8453.1416 87167.2047 5902.641 6185.2217 7209.8234 3334.1064 3334.1064 3902.4464 24100.2362 7360.7924 5009.9796 11562.8489 7303.6984 3691.3534 3936.3702 10180.2343 12989.9751 13825.8647 9234.2326 14446.4211 5627.6367 7031.2112 23856.3641 6710.0215 5961.5914 392217610 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium abscessus 3A-0731 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 71706.6968 53764.0596 57026.356 98715.7128 34336.2635 42060.3641 113725.7347 112179.9741 76265.4911 50107.4918 68932.768 6639118.8683 144269.6008 122058.1552 293710.4653 102382.6273 102382.6273 87673.5285 174299.3712 56657.5148 54596.621 66058.9613 47958.3686 99394.5993 87927.9743 183662.258 70965.7121 212977.7153 67361.9327 230424.5367 54168.6812 78788.0124 92036.4817 142781.6283 59840.2205 330838152 B_lactamase_A Virulence Antibiotic resistance Degradation Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 21477.5349 10625.1932 16732.9635 4463.686 3308.6564 8723.8141 3694.2607 4551.6125 198500.3653 26048.123 12906.8151 4179.3055 4179.3055 5241.314 7657.2531 3580.0187 28797.5762 3190.7078 9924.4065 10039.3122 3773.1241 16761.5292 10821.3311 287031.7416 2933.4602 5764.4146 4252.0364 3784.6784 8619.9236 192764510 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6478.9435 4151.8579 3492.8792 5607.067 115583.2645 4544.483 4066.5001 5353.161 4307.3403 5985.8069 4091.9482 2498.056 5923.1306 182413116 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 5941.6468 5317.102 11891.0609 2334.3373 2824.3649 8295.8534 6859.8518 3756.3361 76107.58 6404.4066 13681.5418 7776.0989 6775.5798 6775.5798 6652.1229 12221.4291 5397.7465 6320.5111 8481.902 2431.0569 13277.305 26595.8398 3654.9003 16805.2601 5819.8643 20298.2169 2952.8353 6982.3503 11354.265 2900.7367 13522.6113 384215862 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 42413.5428 14099.3626 33448.9897 63750.8092 10957.0894 9196.9286 14634.7479 14445.7118 16007.1834 26714.6382 23683.1575 540221.0645 92732.174 42446.5476 28672.6326 100757.6149 100757.6149 17920.5954 48655.05 41806.7794 16440.4787 24560.0399 38925.034 25659.6105 18263.0096 51639.3569 18927.054 63877.6296 34541.7281 41749.5792 14561.2174 19011.6319 19394.9963 11895.1673 29052.7729 302678960 phenol_oxidase Carbon Cycling Carbon degradation Lignin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 30421.8856 10923.9356 20476.5846 12166.241 22450.8973 385143.5276 97125.3096 76002.7369 9469.56 19167.3725 19794.2461 22017.4869 262202.6508 29466.2534 23281.2926 16264.1401 17808.6944 17808.6944 20110.6968 30903.9457 16629.5847 24647.8207 79692.7114 25873.1591 21255.758 35745.6006 28448.0531 64574.0941 53213.6769 24381.7887 31587.5113 105310.0179 177771.2807 17319.9331 15909.1984 72541.3431 421953192 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 71645.123 61181.9077 24549.5126 30298.0292 8310.0578 55768.2683 59436.5964 134902.8847 34642.7601 118194.9689 116987.5901 1262937.5069 72287.6857 57080.8631 71416.3403 115931.3226 115931.3226 47845.5668 111528.7136 43627.7891 77445.3897 134018.8146 120029.7908 67096.1426 97889.5913 74143.8656 67913.563 182231.4311 68453.5773 97467.0032 251103.1657 144596.3266 61573.0705 68697.7905 98871.5272 374851108 exaa(moxf) Organic Remediation Chlorinated solvents NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13081.2731 12575.4866 20648.4744 3914.3834 3693.2041 6832.6239 9259.926 49134.8546 33959.5144 416463.3085 13336.9921 14573.2686 11210.3377 10275.7888 10275.7888 15347.5575 170660.9398 39930.089 62887.5763 22315.0729 191733.0811 29872.0484 26547.655 16584.6005 17329.8204 48762.6031 16725.3547 18326.6994 6957.327 13328.3732 33040.8356 55699.4124 841569.8418 383819136 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 11334.8183 25529.9994 11413.9225 20955.7616 3404.2547 3856.5683 16726.4501 12017.3577 26138.2821 63517.4937 6752.069 11943.9394 8592.2436 8023.2548 8023.2548 6068.3778 6748.971 9073.7819 31874.2221 6058.1639 6540.1974 2938.4399 5427.403 13544.2986 4009.5799 12829.8428 19790.0177 13396.7899 7796.6586 18667.2087 23901.7954 4225.3459 9296.0547 3219733 napa Nitrogen Dissimilatory N reduction NA Rhodobacter sphaeroides f. sp. denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 6212.4826 18676.5855 5914.9662 13522.1346 2696.0082 272711.8064 4489.1678 13807.8806 11890.2615 5015.5327 5015.5327 9897.4581 3088.6428 6290.6409 357423727 terc Metal Homeostasis Tellurium Detoxification Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 25273.2188 12116.8846 6446.9719 38896.6856 27855.6703 79049.1358 13135.1711 58287.4559 13511.4572 37438.9625 87261.8393 373901.9133 41084.4303 59524.3197 20298.2267 18392.1464 18392.1464 13280.0034 33416.6839 23465.1405 40098.6121 21478.4302 14653.4527 12673.7287 18722.3447 45663.6524 16541.2994 75308.9004 45670.6042 40258.6122 10199.8865 17051.1054 42652.8088 18355.0074 20651.4936 356881271 B_lactamase_A Virulence Antibiotic resistance Degradation Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 85204.3469 27386.9091 28798.2205 117515.6383 18652.1112 11893.9615 19349.302 6918.1558 95046.0755 36076.4032 58525.0006 2029294.5455 40188.9684 74628.4493 79080.3955 31308.1762 31308.1762 26601.376 34779.5587 27482.8786 19941.4506 60282.873 26107.0705 16584.1379 29772.4826 54704.2774 22166.6014 77103.4477 45234.4221 54565.4675 21958.1367 19519.8774 24750.599 10592.5602 90241.1887 385235293 pcag Organic Remediation Aromatics Other aromatics Ketogulonicigenium vulgare WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 246710.5187 78678.5817 112370.4438 70207.8794 207619.6453 530380.1554 280769.0613 207267.4324 113247.8638 124120.9645 552607.3393 176616.196 1826524.2854 143303.825 213273.2078 702584.4428 175652.3605 175652.3605 91613.8706 428401.823 113689.3522 379443.7864 169528.9132 202935.7792 130391.3767 187805.1394 138413.628 172904.8896 705131.6793 240420.4306 232878.4056 435474.3447 132364.7776 177334.4195 266492.7083 217934.991 89900817 ppx Phosphorus Polyphosphate degradation NA Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 4819.4448 2783.8877 6049.6555 7192.6004 5250.5797 2842.7354 139478541 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 70737.0965 22392.4954 193958.2924 40946.929 26618.3554 22108.0273 53187.5069 71617.2055 50426.0849 59735.6368 133475.5561 62644.1422 1352304.6181 79475.7569 596605.7107 2038591.49 85085.4341 85085.4341 44426.3364 96999.8752 65567.2275 961822.7177 74821.5385 53936.5302 38063.6134 46577.5283 57429.2445 52407.9544 133136.107 81835.732 96328.7662 58963.6573 84992.8966 46322.903 54619.0871 76346.58 258556481 amyA Carbon Cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 21649.8461 11313.0081 13079.8216 50718.9009 28315.8342 7904.4909 9722.85 13485.6579 11737.7259 135839.1153 54140.4311 26381.241 372495.4871 26269.635 24931.9959 19210.0124 17298.9707 17298.9707 18088.5012 25927.0346 35909.3683 17021.9968 32040.399 45977.7795 8094.669 19569.2713 35434.2827 20719.9897 36773.2426 28003.5256 40871.9279 137964.4779 9264.0741 40836.0028 17325.2321 33409.0167 37548698 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 17454.9299 15498.8596 7912.5658 3835.8259 6703.5436 6475.1854 11571.7567 123516.1234 3807.0579 9463.9741 23443.6414 179731.1645 7580.0533 10031.3355 24928.5148 10706.7712 10706.7712 20236.6831 81537.6908 14339.1584 9294.915 62508.8482 10488.8232 11072.4722 11538.2426 13250.1461 6788.8479 21390.2243 26106.3189 23579.2512 11568.5975 10756.8304 14161.4772 13030.482 29836.6323 159037864 terc Metal Homeostasis Tellurium Detoxification Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 6078.8152 8071.5746 40408.566 8218.7469 3925.8491 4979.585 3265.5596 6880.5266 4083.2692 172973.3892 6187.7466 8892.7408 18017.6248 9339.2209 9339.2209 4319.0304 9843.3407 6814.2077 5320.2425 16922.0965 5457.9414 3839.138 12691.581 2481.2366 12969.1793 16702.8332 24871.8677 3977.3653 4714.8139 5095.6354 3040.522 323364988 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 28876.9905 7003.7672 5413.0484 18571.2711 5439.7511 6541.6225 3805.2634 7756.3131 8710.0021 6278.4424 271935.2631 10061.7139 10797.0739 15666.4717 6135.4998 6135.4998 6786.1486 20310.4036 11836.4548 12059.8603 20965.8103 16780.4616 9633.6267 6814.9995 15980.9543 5787.4305 21301.5293 14370.4482 20537.8063 9659.377 10709.7853 12999.6363 5872.9506 12088.3784 313351 cysJ Sulfur Reduction NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 64970.851 33128.4526 31387.7586 148978.9949 34008.3098 20384.8371 51891.0754 29352.7581 25477.3157 37434.4192 80723.9268 29341.422 1560720.2413 75481.6192 54663.5853 40510.5825 28209.8163 28209.8163 25643.949 63010.4532 41803.8267 45300.7037 99975.8823 69442.7554 23911.5055 28034.5244 53617.6557 24371.8708 85780.4324 45973.4763 57436.5673 21327.3959 25374.6966 44473.9536 50787.2372 65466.4436 2117033 rgh Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5406.4166 7265.5186 8013.3748 4009.3723 23963.8675 10100.483 4903.9893 64797.091 21787.8016 7327.4712 24297.1108 8285.9635 8285.9635 4589.7962 9711.7308 5230.7956 7757.3738 9008.025 7263.9368 3161.2811 3698.8199 11224.8375 2114.829 8853.5011 4583.7685 9283.881 3277.6522 6622.3501 4901.2537 3529.1441 11281.4693 253987589 gdh Nitrogen Ammonification NA Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 9074.8931 5472.3369 11987.2846 9807.3933 6065.2602 7685.3592 5079.5737 11078.6598 11095.8157 6518.0099 213012.1952 11955.8864 12059.6625 10597.3666 8016.4495 8016.4495 7817.0199 19825.8833 13992.4091 11220.496 13867.5472 15262.8584 7995.8793 8543.7901 17203.6915 5321.465 22501.7712 10825.5091 13147.7562 6150.6389 8069.009 7747.0646 5798.7594 15208.2078 350567731 amyA Carbon Cycling Carbon degradation Starch Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 8826.1247 11282.0676 6633.9403 5695.3395 2814.4833 5557.8841 7499.0124 5672.2591 136840.7957 7359.6861 7082.2518 2790.213 2790.213 4881.1454 10050.2244 8361.208 12753.0457 8218.037 11459.0508 5106.9645 4351.9375 12110.8425 6599.5013 19812.616 9229.4586 9248.7863 4703.9371 5759.6539 5122.2731 5265.1166 19952.6127 336300064 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 9481.9512 8536.5132 19983.6767 4091.0435 11247.9907 4661.9533 11734.5306 7877.0136 104797.0478 218622.133 21400.0909 10414.0163 14845.1143 8165.8358 8165.8358 11841.095 19170.1587 12982.7446 13957.1776 12608.7642 16010.9275 6320.8547 6957.0377 15168.4046 9892.0916 18894.7856 8186.1473 18659.8785 5923.2174 9683.0355 10310.1445 9261.3476 11015.7181 392641842 arsc Metal Homeostasis Arsenic Detoxification Bacteroides cellulosilyticus CL02T12C19 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 25104.6631 5269.48 9597.2991 8622.6749 5465.8189 2375.4908 6544.5176 16724.906 37803.5418 145098.3543 16388.6633 5620.969 6437.8972 6437.8972 3470.2734 11875.0879 4766.4825 8659.4763 6696.786 8373.0948 3742.5915 4177.7088 7064.2493 3890.0178 16334.7932 4973.9344 10783.3335 3761.0283 4174.2814 5856.2711 3759.4005 8762.0535 315411639 cellobiase Carbon Cycling Carbon degradation Cellulose Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 23004.791 10587.2698 12240.1671 73141.2568 10810.9439 10226.3259 8408.5912 9379.2865 23153.2133 7230.5383 200462.1258 18038.5112 15407.2518 17223.0624 8108.3988 8108.3988 13676.2699 43745.3093 17128.879 14233.2274 27339.8826 22598.8063 7237.9963 10692.8021 72066.0567 11792.6852 30033.1237 25646.2876 20625.1715 8213.0555 20875.294 15276.0795 10525.6883 16366.8441 119483872 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 31681.2985 16793.6449 8840.6375 8863.924 3536.1579 3986.2573 25485.8142 6405.1427 9808.6567 4858.2492 10597201.0478 4108.9883 9380.6802 7472.4743 50111.6638 50111.6638 11389.1617 10173.9509 5178.7805 12011.2281 6367.8756 3657.8616 4120.5946 7512.5641 3016.1545 11577.094 8917.3501 9519.9316 3457.8329 10997.0899 5663.1014 3080.5764 7012.2221 340351176 chitinase Carbon Cycling Carbon degradation Chitin Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 13062.6521 2799583.3438 847766.639 7512.8991 409185.6747 146339371 hbh Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 10414.7216 12842.905 1973.0316 2739.5948 2271.8605 7158.8234 11436.0466 7349.9969 137483.6023 8867.5432 7665.0494 8337.1784 2811.5979 2811.5979 5530.3153 11947.4385 7375.9382 10761.2513 8750.455 11401.0527 5805.271 7398.2223 7268.2626 10969.0115 19860.2703 7326.4767 9680.7877 4991.6058 5923.4831 11465.9767 126719024 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4425.3745 18730.5722 3929.0564 2100.4405 3337.4199 10533.6889 6375.7707 3578.1186 60672.63 3663.112 3101.7417 4325.9849 4325.9849 8346.4466 4403.9149 5946.4838 2190.3266 5381.0399 4151.2921 2397.5409 46389791 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 5023.4566 5901.4228 3365.0915 8013.1761 2914.665 3886.777 6989.1761 2345.4704 54621.2031 4811.5409 4624.3776 3868.9327 2074.7061 2074.7061 3105.7498 7677.0783 5251.1585 7952.7031 6689.3431 6111.5082 3901.9653 3510.2652 8935.0341 10816.0567 11228.8059 7582.7805 4351.1885 3946.8806 5029.6448 3920.832 11607.8514 219543243 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 19471.0902 56107.0019 11097.0704 8897.2569 10341.0353 8781.2517 14668.3929 9506.0459 20462.078 9620.9953 16921.5376 8358.3454 382937.1631 19674.0961 22925.07 10010.8387 8508.4836 8508.4836 11663.2837 20481.2685 15012.8491 20636.2712 14678.74 20792.312 9345.3778 9898.5593 30554.0619 9413.8038 41327.9768 16455.214 19425.5149 8485.949 11148.3705 14210.3717 9087.7587 21605.9055 323385280 PRK Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 18157.7952 57850.5554 16974.0923 20859.8933 7984.0556 41163.8886 35382.3504 5495.433 11960.5983 21133.9702 11345.295 271966.4971 10864.2592 51059.5317 12146.9042 23860.5191 23860.5191 21936.6359 30283.2851 18265.7031 27693.3333 26165.6466 14719.0671 9050.214 12062.1595 26232.2656 15799.4856 45275.5381 23151.551 26384.813 10833.2811 12230.7576 54988.607 9649.064 20461.5283 139002644 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8579.7306 5629.2154 4269.0903 5004.3169 7323.766 6338.0419 2312.0716 72678.8524 7907.8088 7834.7581 6531.588 10373.6892 9196.5426 11764.0133 10416.3348 9890.0596 3618.4198 3623.01 8891.288 2925.6806 15858.3485 9598.9963 11627.1387 3510.2999 4002.1849 7259.5754 3397.9352 13131.4515 77978460 urec Nitrogen Ammonification NA Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6085.7764 7578.4372 6391.9069 2905.5604 5516.5721 1948.9746 5930.1235 4540.6621 116420.5865 4619.934 3344.2587 6722.975 3472.9843 3472.9843 5192.766 13348.4599 8945.6613 5231.9743 10755.895 8775.3458 4636.5974 7030.4181 10069.8382 4735.2612 16372.1474 5355.7224 9087.6919 8947.5366 4407.3589 4137.1497 3276.2872 22228.5469 260535205 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 4471.6259 3601.8217 2333.9561 4871.5925 3288.1078 36531.6113 4309.9331 3451.0432 53693.1109 4089.6882 4404.9822 5519.6657 3388.7878 3388.7878 3552.5331 8609.751 4903.5565 4861.9905 19184.7652 4022.9755 10375.3052 3368.9036 6193.7269 4126.2514 10090.3986 5832.6798 6457.5011 3222.39 5154.7109 3934.8642 4857.5877 14395.8208 301119087 rgl Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 8918.6956 11602.2308 4616.1834 3590.1567 5404.4989 11386.5589 9930.2517 5163.0784 321945.8104 8307.9741 7537.4587 4244.4571 17336.0093 17336.0093 3217.8719 76293.771 5794.6802 4319.0467 18300.6444 4967.1107 4169.2831 5105.3933 9030.4157 7349.1136 20327.9164 9483.6121 8767.5126 11308.0464 6506.7125 152021.8415 3034.7971 8620.828 386724843 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 59353.9695 71736439 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 47859.0353 9154.4221 9371.0704 4682.1995 12480.7012 14075.6477 7751.418 14166.5415 19280.7087 10308.8465 391984.327 61643.8762 18679.9738 10398.1632 7724.9209 7724.9209 9441.3543 24568.5798 17185.9307 15965.0076 14327.3228 18564.8143 7678.6145 8916.7336 18287.2938 8901.8577 37486.8947 26489.0508 16647.4494 10465.5771 10995.5593 14908.2022 13148.2908 25393.2676 66801995 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6361.5644 27994.3035 6817.3029 3781.6812 4430.2124 9702.4407 6388.2588 6388.2588 3251.2685 30912.233 6634.4521 9051.1517 11546.5276 4235.2154 6750.2999 2741.8023 47663.6027 6012.8732 33645.0086 2766.6535 6254.9503 3656.7819 116192823 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10127.3029 20353.939 6232.9286 64114.7035 8076.499 52841.117 6823.2185 13822.3228 37537.6765 14243.1109 343340.7043 46272.9469 12957.709 43261.2951 22880.402 22880.402 7037.6762 30302.8384 15839.71 21916.2476 24367.8648 25684.0266 7487.7732 24889.0007 16509.489 24458.6293 69701.006 9074.4819 35488.1399 10794.2985 18622.1678 388487119 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 115902.185 15694.5433 14384.7519 18604.7921 9535.2753 3652.3712 2815.3074 3543.7495 3303.5655 9136.8478 155519.6724 10907.005 31381.8548 21986.0773 17379.2893 17379.2893 2818.3454 15695.612 8676.339 10077.1025 14271.9785 25235.7867 9624.6312 10849.9506 6236.9505 18272.2393 9567.7473 14571.618 4744.8177 9904.6083 11859.678 4561.6043 21462.7303 118164444 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 14591.2998 13987.5989 5013.1084 4546.9251 2019.8896 7956.9948 7816.7749 6260.4418 80733.7717 13960.1802 5169.6745 5319.5647 11562.2528 11562.2528 3008.1121 7121.6643 8012.8761 6500.1255 4916.0317 3791.0622 3251.3145 12990.4651 14466.0042 11185.8859 9018.2555 15108.9331 2595.2388 6601.7408 4036.749 4406.4205 6109.2403 396926125 onr Organic Remediation Others NA Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7754.0272 6295.9415 4311.3 26951.1006 5921.4746 116489.2425 4345.401 2882.6606 3933.928 14916.488 3840.4338 355117.0076 8311.8006 8269.2778 11657.9017 7934.0773 7934.0773 7127.0729 9690.8193 7352.219 4943.4934 6441.5241 5357.4722 2616.2577 3209.1 14555.7122 6432.8884 14411.8831 8627.9906 8219.6469 7873.0239 5714.1668 6069.2147 3210.8599 14728.8732 340777020 nitrilase Organic Remediation Aromatics Other aromatics Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 9320.8844 5186.5813 13456.2912 7863.7201 4389.8299 7705.4444 2878.56 4253.7099 6987.0203 12722.1103 222380.1348 14155.592 11746.7328 7970.5046 4616.94 4616.94 2743.0063 12838.9746 9640.6378 6209.1054 13944.2824 17488.6466 5299.3717 6528.4009 10575.2627 10278.4342 22770.1646 7594.7682 11452.861 4841.3391 6193.0344 6898.4125 6738.851 7449.4924 325674829 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 11772.4063 12078.9939 15955.6807 26333.1269 4709.6247 9035.1795 5497.0173 6055.3471 12446.3779 10366.7846 6109.1316 231581.5283 16294.0402 9952.9889 11084.3179 6194.5946 6194.5946 14105.5597 18701.8505 16510.8003 14025.0415 14862.0849 20283.9708 7093.8325 9206.9608 18556.4247 8358.6314 36751.1025 15013.4718 18522.3335 8703.5877 10419.4846 8972.6917 8426.4202 30142.8304 30269611 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8241.1993 364053.3239 6142.1018 3486602.7629 18734.1552 8327.6963 5555.4296 223552193 terc Metal Homeostasis Tellurium Detoxification Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 5362.2002 5508.6778 8951.6966 5943.202 5568.1328 4394.2519 6251.1448 7116.0155 3736.8511 138036.2317 7924.1826 6525.9214 5603.7932 2728.0284 2728.0284 5198.7358 12065.8538 7356.5679 7857.0972 5104.7933 11721.272 3758.4831 3615.2568 11060.1464 3689.3539 13725.263 7201.4208 10800.6801 4062.4438 4769.1157 5362.7838 4774.8379 15970.7903 345636499 amyA Carbon Cycling Carbon degradation Starch Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 558137.4571 322105.6166 15603.3178 11004.4512 4276.2228 12325.758 13044.5945 48794.6302 11624.3527 14940.4759 13657.7701 508182.1629 15502.2646 31896.6008 28690.9491 19422.2528 19422.2528 9462.1635 31051.9009 27550.4473 23714.1409 17076.2209 15954.3285 8113.5881 15785.9293 22618.844 21614.0088 52691.8757 21099.3834 23478.1525 6818.052 10024.1307 10780.9764 28690.6401 19779.708 71846167 bphF1 Organic Remediation Aromatics Polycyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 5251.2727 20085.1578 3858.2832 2951.8487 3158.5721 3788.9054 5368.9682 2494.3996 57464.7649 4335.8427 4392.0264 7879.438 2857.0297 2857.0297 2967.4376 14712.5912 6992.5549 4690.9919 7589.8099 9384.7905 2863.4753 11461.0665 8033.1014 3482.8295 12135.6019 9663.8537 9134.8703 4790.0365 8439.4808 4023.1256 4678.5893 7618.2329 52548862 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos19C7 superkingdom:Archaea; 13112.9586 8053.8666 9594.6167 7731.4792 4893.4209 4082.0146 8537.8518 10022.7241 3416.1944 230457.4203 12646.0199 9772.8183 5110.3948 3764.4284 3764.4284 7020.5103 16021.6391 12099.4339 8933.9027 12760.5205 11729.1591 5863.3389 6214.8889 12954.7522 5425.7416 21234.0739 9891.656 13914.042 4832.102 7439.938 7058.9204 4443.9962 11216.6817 32307979 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29763.5841 16372.4936 24576.0771 10809.1649 2118.7182 14485.1007 3010.8815 9479.7202 14231.121 6748.0125 6150.1616 32105.2196 6492.6421 6492.6421 11926.4686 69118.9677 8500.4387 27908.7274 8306.8555 6108.6807 7742.325 22228.8658 48606.683 13621.6122 8499.0727 15022.386 4558.9736 14336.298 16978.48 4931.2294 6319.1681 365292956 ben_bcla virulence NA NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19777.9967 2294210.349 7130.1847 71164.945 19286.7808 14940.353 9475.9855 4440.0583 120144.4316 33216.5622 83795.3403 165239.5187 78258.7378 13811.4048 17564.9023 26276.325 26276.325 187590.1494 96572.6026 29599.5033 12729.9912 12989.3597 23313.992 32511.264 15943.8869 21362.2769 11696.8677 63406.0328 17618.7456 24363.3387 13714.7504 30696.8572 16687.4707 8293.708 21280.0336 116048312 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 7803.5177 4159.6953 36736.6474 14527.861 247814.2193 4390.5387 8670.4302 12955.7398 4843.495 120373.8245 7777.4416 11420.4958 7208.1424 10161.8203 10161.8203 6757.2523 19814.6343 8578.9531 7465.8026 25096.6225 7303.7846 17338.6994 5006.0629 12509.5247 9192.0897 25424.7944 6068.5543 11284.7984 7356.37 9953.5065 21612.3549 7356.5794 24385.9189 186463160 amyA Carbon Cycling Carbon degradation Starch Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 22977.7491 9503.584 20883.8404 23259.3711 6906.1406 5393.3451 161264.0561 8631.9086 9967.9972 16898.1232 35135.828 296302.8612 21826.1841 21147.3373 20092.9015 26562.6824 26562.6824 18512.6655 16543.8232 27715.4095 19382.6865 25165.8748 47891.8847 6893.0555 66740.7879 16208.1178 129971.9394 36734.0031 21976.0104 25506.2713 11498.9392 27968.4892 12046.7681 4974.4012 8829.4735 338974341 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 244921.6651 18055.6374 118135.3997 45572.425 107397.9881 32122.8156 17735.7455 81419.9787 38942.034 66930.666 64381.076 44076.673 1507377.6978 85902.0749 299965.2852 91372.4825 61041.3608 61041.3608 27670.4153 56997.8665 62160.924 717906.8703 67024.0085 68067.1388 180307.4543 27779.8174 58618.876 226473.603 134040.6521 55296.7511 79557.3676 113825.667 49755.7717 43034.0822 32713.1074 121797.4884 88917246 nifh Nitrogen Nitrogen fixation NA Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 24776.5412 17347.4571 17671.0318 32144.2321 26176.1409 22615.7373 15948.2358 18577.5474 28341.6855 16342.9281 474262.9621 28365.6523 33583.4686 16402.1702 12271.1688 12271.1688 22172.6482 38439.1502 27332.8726 41729.5588 36404.7443 33754.1767 13286.3741 19885.5855 27600.8829 14449.9325 60821.8199 33804.2629 36280.2319 14808.4749 21764.0206 27725.6834 18375.3767 46851.985 164455638 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 334415.6986 29905.9382 837935.6309 1849.2044 20686.3091 2092.6175 38846.5163 16880.5466 65463.7472 7975.1954 9044.8566 2785.9791 2785.9791 2688.5726 27121.3121 9072.1373 4371.0948 23834.9881 66248.862 2528.1022 28969.4836 10344.1332 17067.7029 12148.5026 11558.4344 5816.7272 24944.1403 209718.2703 2205.4345 150027803 TIM Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 38240.9733 33935.6388 27300.3704 391925.7478 17210.1355 43245.756 15996.5774 35495.3569 49041.2606 42002.2765 450366.0519 22851.1395 149954.1356 33580.0224 36994.1963 36994.1963 11963.0241 90665.0033 31530.1342 77556.5501 37607.7257 19832.8408 26637.947 20290.0044 25373.3454 38846.0285 52412.5397 68347.6828 47291.4939 14248.1831 34609.3257 33300.8081 36766.9099 133366.0253 374375070 chitinase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 112601.3747 4155.6288 23136.4326 4246.5729 5226.7922 3614.0817 5060.1778 2657.9126 88896.3977 4991.5842 6043.1002 4796.7001 3515.3325 3515.3325 2842.0906 12680.306 8053.1416 719905.1778 7425.2644 7909.726 3275.0471 3800.1528 12517.4887 4836.3156 18863.2193 65814.3395 17835.1647 4057.3512 3934.2812 3487.7928 6215.2892 20278813 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 50713.2405 14580.0025 5659.4152 8382.5297 55416.4509 18121.967 34118.1167 8910.9858 17735.9622 12729.9467 224257.8723 26186.5114 19314.5095 23412.4572 14440.1785 14440.1785 3503.447 44855.4599 15752.996 17104.7135 26209.8828 10025.1675 10078.0812 8217.6721 14488.8527 6727.4339 23946.6977 27230.3554 48870.2946 7025.8237 23471.8334 16658.6695 17769.4299 10877.5815 257058953 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 66278.9496 15217.3112 7990.9429 10303.7695 7870.7724 73552.3044 2572.3421 9212.8526 12804.8336 8093.8661 234400.0601 11928.6561 12885.7991 6772.7041 9014.0996 9014.0996 139827.272 21557.5976 11644.9286 52763.9805 15689.7935 23129.4225 11004.8646 5324.7363 14957.9103 4957.5327 25352.5653 11816.2014 15472.0362 5156.3772 16671.2265 9130.8199 25414.6417 21834.3602 227069639 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 68168.9907 132128.3786 37882.2775 75288.8967 7716.573 48866.4609 239007.615 29800.1681 75805.3097 87638.8503 90924.3816 2488627.8093 71531.3701 155353.3181 259157.5651 51423.7625 51423.7625 51058.3003 95967.4346 124360.8426 60334.0756 83162.9804 67115.371 47307.3718 44600.6811 92628.8346 70087.8767 150233.7588 59025.0854 98409.0238 50078.0773 89858.3722 123497.7449 52939.7289 88877.6225 85706829 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 4302.1061 4849.4232 8221.3922 4087.1414 6139.1432 3808.9966 2980.1731 61507.802 3602.2586 7481.4855 4957.6995 4957.6995 8146.3551 10527.6265 29096.9049 6384.7108 7226.9192 3491.5987 5405.2605 13738.7761 2073.5669 4196.1394 4120.7217 6408.5043 6991.9209 255326903 amyA Carbon Cycling Carbon degradation Starch Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 68260.4823 11906.6567 25866.2168 11298.46 11487.6307 14166.9974 64871.9707 35360.9713 47761.0564 266363.1035 120858.5141 109422.3458 15704.5977 22570.359 22570.359 5167.4365 33789.5058 14139.8974 35611.6574 27956.7159 29688.1559 12911.1422 33356.5174 41227.4566 20513.2913 46859.3568 11906.0831 39263.4253 27096.173 15338.6785 51087.3211 6978.2306 14520.0078 302547426 xylj Organic Remediation Aromatics BTEX and related aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 26023.9454 8710.2808 10697.9854 3218.9338 12170.8166 3295.7835 4368.0671 8035.4513 28518.5598 4198331.2423 12480.7938 7658.5251 16203.3249 28626.7953 28626.7953 5582.5854 18772.8535 12739.7508 110639.3594 13545.0804 11136.6232 14815.2846 21140.0146 13644.4048 16611.5256 26314.8257 9627.6958 19657.5388 10845.71 9519.309 8448.4216 7451.7088 10768.8884 271969990 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 23855.393 59620.1097 4674.8907 70080.7016 9439.3327 14505.7898 13372.4886 11941.9059 12871.8365 42166.2149 25003.2693 207172.1345 17610.2029 36545.0629 34215.7081 16332.6249 16332.6249 239194.3452 55510.2849 70070.9729 17589.6733 25028.7974 8680.516 55468.8332 25460.9784 23184.6739 68830.8796 45183.3321 37383.7198 32606.177 11323.2468 20440.8341 52401.5166 17181.4795 70356.0255 238801080 B_lactamase_A Virulence Antibiotic resistance Degradation Proteus mirabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus; 783237.8997 50127.5325 13130.2812 10043.7269 628093.2739 24052.0152 77934.3318 73291.3735 133815.458 49700.1085 71124.0682 74425.8093 920315.7017 87012.2793 133409.4376 349453.4476 77623.9073 77623.9073 43491.7503 353543.8754 64509.0356 74055.4657 69877.0695 103378.0929 53385.5438 104881.6533 89872.1622 88038.1619 156216.7804 72097.8292 162286.0531 60686.7198 92419.8102 93033.2162 141191.4878 68613.9106 339500622 ara Carbon Cycling Carbon degradation Hemicellulose Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 43546.1724 85715657 ppx Phosphorus Polyphosphate degradation NA Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 6617.6688 4974.5887 43542.3756 1980.8553 3085.0357 8716.4101 7843.2165 4325.7566 94356.6702 6229.4535 8698.9962 7405.0731 5579.7246 5579.7246 3203.7015 55549.7667 10672.5796 8463.6355 8440.0081 7337.825 3527.4276 3727.1092 13518.2382 4373.1258 20887.4109 7210.4385 13409.7894 3989.3326 8791.4012 5852.7218 3051.0841 337746181 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 25886.8996 16740.518 53344.9103 41848.4396 9978.586 6278.731 16065.4086 16852.3744 9797.5216 15423.4533 16487.514 19787.9443 360553.3501 21225.6355 23752.0822 17281.296 18090.595 18090.595 12575.2862 24381.9103 15283.5635 18090.9353 23858.9306 29543.6083 11429.9428 11747.2244 21837.6191 9913.1931 35497.8497 11340.5339 24350.4953 25509.1675 12780.2056 13870.1356 9770.2237 27007.3979 214029983 alkk Organic Remediation Others NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 31326.2049 35514.354 11932.3625 31336.9114 37699.9737 11958.0994 26166.5446 22069.4571 27088.2739 32867.5835 30681.2611 80896.622 453628.1006 50816.9216 37177.8158 68569.1938 26099.7351 26099.7351 16172.3451 31084.8654 38819.98 297207.3442 23754.7779 48135.9715 12650.2946 18870.8623 26465.4904 65015.4123 56603.3446 23756.0123 44550.8197 27060.8425 17241.9687 17615.5339 18201.7606 31292.0816 29606233 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 26854.8658 15732.2812 11262.8857 10738.597 9832.3651 25769.9799 30953.0454 32354.8127 28070.2726 289634.1425 27302.5137 19860.7773 15542.0597 28302.8309 28302.8309 18139.5662 36282.5003 13491.7749 16702.927 21294.4324 28176.5043 22744.9089 21681.445 29900.6129 24039.731 48249.0683 33896.287 119497741 amyA Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 61653.3927 35543.633 44311.1234 64865.6426 18303.6949 35325.4006 91210.9999 22274.2857 117358.1002 54805.4883 71315.986 1171366.6859 55812.817 77481.7669 69367.22 57637.6899 57637.6899 30247.1758 72688.5489 48271.3219 50134.8619 108724.0522 44548.7776 50293.4553 55391.9651 66290.2959 109157.1234 55317.5719 60509.8022 41085.3713 37853.8962 43758.3646 205627.2212 66959.4556 340360549 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 1041844.3834 70335.2604 704838.2886 843552.9721 3896636.1461 2153758.4126 723584.066 807460.7229 314719.0021 725973.9379 753038.972 477457.4031 17272330.3908 797083.6167 924182.9204 2195891.0802 804687.6369 804687.6369 431321.0362 646631.0817 470031.1755 575273.2524 1117611.3768 796721.1501 338724.3869 460395.7363 1141976.8728 316980.3529 1347326.2532 802925.2826 671278.8624 460989.4147 452150.4393 460724.0353 429721.755 1787168.6924 23465129 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum NCC2705 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 4812.6484 6091.2579 7372.5861 7908.9575 3290.9857 6099.5773 3569.8024 203806.5099 7269.7407 4781.7138 4781.7138 12777.3807 4886.8872 13543.6864 7052.6895 2634.1915 4514.5817 16291.8838 5850.1152 8080.589 9985.7661 3380.8511 4488.9745 3335.1641 5360.6804 5317.2018 196196114 ppx Phosphorus Polyphosphate degradation NA Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 31105.1084 13943.0643 748771.43 29318.7082 8248.0875 25368.2672 65806.5221 13251.6826 43513.7238 31071.5024 12908.2074 820304.2379 28094.4843 32523.694 26306.1901 22586.1725 22586.1725 33361.8936 52585.1043 38018.8638 57647.587 71570.0033 200356.3042 14028.9181 20578.7721 57700.9125 32656.4695 86326.0033 43103.7695 66556.4728 27184.4807 41721.2265 37964.8635 54155.9964 131641.2632 151302218 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacterium indolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 4515.8958 17056.8383 5836.2005 4221.8509 27069.0439 290960156 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 34612.8072 9816.3713 4639.0558 13062.9216 18444.8764 30178.1656 38954.8304 26770.0435 76535.936 39176.2842 102685.5643 9145.2255 57060.3019 45699.0028 9449.3347 9449.3347 5552.1714 29478.9305 8082.1692 30377.2425 104196.4091 6854.8764 10119.051 9587.8064 19355.9943 28207.739 29677.7323 87257.2183 37282.5468 10806.6192 12532.4763 29769.278 12415.0282 11427.6947 199594023 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26233.5442 26100.4566 8675.9767 14061.149 11389.629 44385.4522 61214.411 36715.0109 148824.708 41797.7636 95803.5128 404216.9972 23885.2915 220067.5391 32805.5717 65994.4863 65994.4863 45629.5668 29904.9172 17795.0002 13201.1611 22192.8449 112202.2254 27763.1335 39410.9442 29715.3064 22565.2078 134040.8835 38351.9072 48980.307 45304.4311 19444.0914 26865.9757 25971.8779 13459.7071 255284382 cellobiase Carbon Cycling Carbon degradation Cellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 6839.4461 5708.5034 4552.0117 3004.8696 1914.5689 5002.6956 5816.3657 13083.0487 102706.0218 5384.3034 5684.6755 5683.301 2440.4004 2440.4004 4074.2102 9373.1596 6392.9272 5704.1864 29891.1225 9468.141 2218.9429 3631.4241 11451.3719 3617.7822 12309.368 6901.6923 10043.9488 3202.0698 4627.6487 5331.1684 4449.4885 6756.1588 153962580 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 978974.5359 342903.2865 996910.5549 1242004.5114 1064015.3732 1899238.588 701521.4434 807734.9982 830712.3963 646440.6273 865170.7055 407297.4505 16697647.6822 842400.7596 950537.3169 1963500.8189 679281.2274 679281.2274 498498.7505 709198.1027 626210.454 608725.4366 969388.7606 1001322.9462 449463.9829 462635.6668 1158131.4626 328481.5596 1190472.182 866365.2608 809724.0324 449005.1964 399373.8076 441506.7102 419967.7018 1972615.8008 20808241 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Caldanaerobacter;species:Caldanaerobacter subterraneus; 3850.0436 116198565 lactase_fungi Carbon Cycling Carbon degradation Lactose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 20240.8491 12885.9755 8913.0285 15396.3431 18375.2777 8696.0666 6826.8057 12653.5302 14201.828 14443.9546 6440.7091 286775.0079 15399.2462 9711.6075 6174.6305 17514.6701 17514.6701 10005.4444 24592.1411 14315.0719 17750.7501 16075.1411 26581.8842 7525.1644 7650.6813 17823.2032 6090.737 28783.4328 14779.0469 16728.625 8362.6463 9522.1852 11136.5306 7120.0621 17904.7261 147847664 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 45007.6245 12883.8302 23562.5663 53136.8088 55821.7607 34405.6018 33318.187 27298.3811 164529.1474 22865.0008 30186.0517 29019.9565 670889.747 82703.0154 41814.8112 27337.9911 33585.0199 33585.0199 22215.1989 68980.6817 32530.533 35231.7302 38594.8274 34788.5798 37927.6004 81593.7159 41025.7941 54183.268 72689.0731 40668.975 48824.7394 15555.2319 27295.7201 28174.9354 14298.7963 57004.6525 385696965 cysJ Sulfur Reduction NA Neisseria sicca VK64 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 43844.5662 238440.7027 114493.6453 29092.2397 85974.9693 27556.3473 33804.1675 39174.7963 174355.4094 30650.987 71985.0789 38847.3452 656375.288 29476.872 82721.7982 72548.5964 38587.7582 38587.7582 27888.0825 37583.4426 30540.6985 123026.9658 30604.433 38000.4788 14459.323 9328.4916 50998.5873 33813.2841 63773.1016 45889.9929 39220.9751 17266.5854 32823.1276 30782.2308 21862.5506 71493.3298 294054147 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 27572.3079 19009.6916 24594.6696 22705.0457 9751.6486 30937.0347 26011.8424 33320.0681 24928.4929 21785.7499 48918.8285 17036.9339 543890.2774 25742.7969 31507.4815 18470.2352 34961.4534 34961.4534 14536.087 26422.6851 22852.3685 14914.0326 38329.0317 48116.1976 12245.7339 19918.9233 28287.5899 12978.5814 50776.7273 17229.3443 32543.7006 22490.9286 14929.4155 18476.3073 22317.6969 45625.3812 346921804 nitrilase Organic Remediation Aromatics Other aromatics Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 21837.6948 11846.1915 35675.0001 6241.854 32969.5512 20222.701 78275.5219 16297.1621 24191.7713 14741.5349 100834.4251 35861.8769 485699.7689 35334.2039 38717.5718 31950.9606 58632.8879 58632.8879 9732.7368 37130.2951 19442.4314 51867.6988 38262.8086 33788.414 21182.0792 27192.8278 29214.0281 24963.697 85470.4114 40789.1957 64644.8663 24771.8972 37650.0596 27129.4653 14526.3409 22520.3753 422314511 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28610.9499 11547.7228 19074.7693 5635.6519 18804.3224 33764.5299 83669.0729 6663.7059 28992.1705 114373.5545 122678.5797 14976.6447 22760.9104 44820.3823 30096.1316 30096.1316 9730.7289 30630.4142 15104.1639 24156.6116 28284.9738 25574.7896 11942.0496 20111.5384 17243.1279 26570.9641 36984.5329 27003.347 24218.1698 13012.3762 26409.7587 30061.5893 11657.9052 41508.9874 319434821 terc Metal Homeostasis Tellurium Detoxification Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 6373.6375 6202.6615 2480.1743 2617.7099 4666.993 6527.1405 2854.6018 4962.2447 3341.9469 3341.9469 4027.574 10882.2245 5723.5272 5960.6916 5620.0505 4021.5828 6590.2577 2157.5362 10148.2387 5144.6431 6828.3145 3692.15 3896.5494 7194.7046 4662.2262 10025.4128 146188553 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8863.7116 16781.7843 8746.5495 8841.8246 5864.8504 3893.4464 10400.3616 16925.8104 5728.1116 195388.0772 10256.6208 9357.4197 6604.2658 4909.2209 4909.2209 9593.5785 14585.6989 11993.9933 19956.1668 12147.9574 15402.1237 5034.8939 5799.5991 16169.0897 5722.8634 26068.3128 15227.3559 15259.8831 6405.7883 9719.7784 8866.7392 7213.657 17684.432 119714930 one_ring_23diox Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 52167.0591 35777.9048 6421.335 25579.1993 19685.7789 38219.6585 15242.9968 11675.2374 52604.7897 58891.7206 29576.1272 1197041.8764 146952.8533 65028.6468 25627.8095 49434.8024 49434.8024 26980.0024 45359.0961 33661.372 33034.216 72482.481 24205.0589 16620.0717 40448.622 22480.8963 39528.225 89232.4564 22496.7995 350162.9544 12711.7685 28492.0617 34130.4913 31480.1222 38620.8839 106769227 amyA Carbon Cycling Carbon degradation Starch Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6669.9368 7505.2784 14022.9719 10184.8526 35291.3318 63234.9912 13643.1752 18865.2258 8942.3292 337257.335 14322.2304 11562.8065 9311.8885 8598.3202 8598.3202 7426.0054 26888.1072 10543.5537 13386.3781 11391.7195 15386.2125 8769.2093 10179.7894 36821.9175 15784.4414 26250.7435 16487.8895 17759.2527 43158.1213 14092.7796 13802.4866 10505.28 13674.6579 91697317 arsc Metal Homeostasis Arsenic Detoxification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 3927.644 9979.6614 2592.2375 3464.6772 3890.9999 2167.1847 87934.5904 4599.886 4809.3863 3914.0253 9044.9346 4742.5345 4387.8946 7616.308 9685.8569 3118.0092 3812.1149 9319.8028 3667.5125 11472.119 8253.1971 10854.5124 3357.8444 5355.9185 4657.8293 2977.8873 8943.9473 389778723 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 29572.3059 15217.7005 14833.2628 45835.0529 16793.4755 18313.308 15041.3789 8235.0812 25788.5271 20642.2263 11745.4819 274547.3379 19290.6391 19635.1255 31876.7045 14148.8015 14148.8015 15142.4176 66103.4097 19331.8652 22362.3282 15095.6091 23244.1608 12099.7019 15317.5976 28753.4333 22845.7928 46823.5583 24113.6329 25484.9419 12082.931 18675.5499 20478.4405 10739.7036 20000.5695 111026255 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 32426.3169 23285.8605 68784.839 61237.187 14026.1255 10459.7142 50375.4478 24150.3177 202423.6216 16643.5118 41393.0322 27970.8822 28036.8927 28036.8927 11230.9102 47941.611 17684.9989 29010.2883 72500.6709 149047.9177 15097.6513 15166.2673 17544.509 19506.574 29879.1832 55395.3142 36998.5833 12509.9232 26773.7124 12187.8582 8075.7137 26799.3009 389689798 urec Nitrogen Ammonification NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 10560.4792 16083.8536 33266.8959 126876.8247 5954.3312 56891.2503 10753.2527 16296.4299 138773.6712 13245.4602 9553.8859 12844.6423 6400.528 6400.528 9854.148 17089.4259 17790.5131 9786.2701 8723.5088 133989.9408 5962.5358 10901.2041 16489.1713 139904.6612 23230.9237 17828.0628 18060.8218 5907.243 21929.5428 35394.7143 21096.9172 5903.3827 350275411 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 7191.6967 4633.4727 2077.1127 3631.5044 6452.7544 2158.2217 2158.2217 4355.5632 14602.571 3648.657 2890.4778 2190.9547 5763.2304 320551868 dehh109 Organic Remediation Chlorinated solvents NA Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 40109.1966 9364.7146 32472.8175 12014.7066 5912.4187 22568.0366 23540.0517 34872.8553 43366.0819 70184.5944 25547.111 253873.5496 17617.0463 113532.6046 299346.7537 24734.2757 24734.2757 20119.7219 84338.9188 46355.0403 62516.5601 76126.6826 15513.949 26902.3628 84876.0067 41858.408 34583.9914 155747.1924 34641.5578 27701.6906 14005.1631 24734.9395 37363.4393 33184.2011 25672.1402 26278720 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 80874.2002 17349.0259 16356.7319 18284.8912 14586.6545 27913.8332 89352.7558 18042.4159 21181.1818 34203.2105 20511.9731 630295.0998 31772.2833 49957.8159 21736.404 30859.8305 30859.8305 27546.9634 44591.2548 39674.7546 46406.256 26261.3091 23571.2188 19438.0454 16930.9912 37791.5754 25178.744 84321.9355 71542.2672 35064.3894 59494.1859 36798.1543 26046.8158 34250.4508 87321.5579 83972356 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 94924.6049 29107.3886 79914.7166 323537.739 132675.9873 47260.7795 61395.989 261258.5908 51142.4518 69963.3559 104119.7785 59914.8208 1872071.6739 75941.0042 104797.291 92631.9968 73498.7915 73498.7915 50276.5851 89346.5135 60234.8018 358683.7831 78343.8614 119352.8087 95740.0792 61305.4093 97790.0068 40943.508 282832.0228 100875.7943 93283.3322 41946.3572 67605.0377 50122.8487 218344.2538 121561.6828 261281022 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 165919.1475 30663.355 85500.0943 39170.0211 391545.5545 24257.0977 147612.2683 67121.0259 22733.7796 54878.5508 76572.792 59533.3325 1462045.2856 72540.5879 747009.5893 99918.2311 80835.5476 80835.5476 45471.6655 91654.9589 54424.9612 68237.2627 563715.9377 171834.2169 48094.5407 50356.5045 71646.3481 46260.7917 311715.1579 72335.6201 83274.5863 41136.604 74012.8086 116432.4268 55936.499 94876.847 29335727 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus collinoides superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 5898.7436 3120.5595 5419.6161 4102.7819 72340.6273 6155.6469 4444.0577 2727.5131 8150.2633 5930.6305 7279.9102 6888.6217 4408.2427 2923.1415 2710.7056 6473.5368 11987.5206 3812.6069 6045.167 3994.8295 3995.3187 3896.9775 3193.391 8947.6142 269835745 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 7028.245 6759.9089 11961.6983 3255.9064 2744.9387 2353.9765 5905.2502 4620.491 2630.863 135867.9589 16251.8773 8445.4056 8431.6262 1997.3752 1997.3752 7577.8829 14452.6531 12016.1375 8172.0661 13051.3781 11286.7684 8703.0592 4404.1911 10076.5142 3882.6065 15613.8416 4695.661 7687.7268 4200.935 4711.0532 9338.9227 18231.5402 7848.6486 150031344 phn Organic Remediation Herbicides related compound NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7037.0125 2711.1152 4562.1702 9780.0318 2204.8966 12589.1712 7082.8591 3091.4983 93353268 terc Metal Homeostasis Tellurium Detoxification Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 16429.742 8679.7372 7004.9923 6412.5689 12362.3489 9748.107 15087.5252 9514.5992 193872.8737 15862.5555 10900.0333 797104.2411 8854.5414 8854.5414 8372.3333 17107.9884 12404.2628 16837.0944 18721.8223 21034.308 6073.6713 8585.5914 15326.6132 8429.5061 24435.7728 23630.8802 18871.4798 122593.7846 11648.6437 16974.2532 9238.092 15733.9718 350570068 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Neisseria wadsworthii 9715 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 4192.5208 21991.7152 3211.4554 2162.1953 4232.2729 4463.0124 54736.1774 4729.7367 4419.4412 2639.785 6157.0116 4461.8546 4100.8113 4707.0932 4910.0856 6073.0559 4012.3831 6298.5414 2055.572 3673.4556 3052.0662 2557.6961 5090.9116 326415449 one_ring_23diox Organic Remediation Aromatics Other aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 179101.0497 4835.4194 13484.7976 7955.2457 4403.0115 46125.8502 3309.5433 9459.3067 10120.3933 10745.1436 228508.6818 8506.4163 9751.5554 11143.4973 6173.8016 6173.8016 29198.433 14650.0588 9532.5827 13053.5388 14746.3396 12082.8799 9676.8857 5991.0672 12025.4136 22309.7418 38069.0679 8062.1877 15726.7757 9501.8325 8602.8961 13322.7064 5020.6605 12069.7336 76803694 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4863.086 6442.3415 6219.0862 1811.6354 3977.411 3793.7271 84433.4142 2937.6362 2937.6362 3928.766 8497.8796 6071.1069 6781.5961 3883.0756 2704.9026 2572.7129 8394.98 10787.3208 4997.087 6897.3398 3904.4162 4249.8883 4209.2714 4601.3263 218715573 glucoamylase Carbon Cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8205.5441 2938.1017 2847.9279 28614.3106 11972.5121 5738.0025 3614.6423 32459.7542 8026.2191 9506.6631 120563162 amie Organic Remediation Aromatics Other aromatics Desulfovibrio vulgaris subsp. vulgaris DP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 148193.6133 61893.0215 14182.237 68647.554 7194.5419 4232.9329 34215.0779 20896.9325 142132.1377 99920.3135 42455.2265 387199.9972 20833.5228 39602.2417 24317.866 19682.2847 19682.2847 10824.6599 62983.9281 27007.9696 267595.765 75945.0059 19018.3601 15725.6951 21387.1409 25420.1442 39554.932 85738.4655 27885.1614 48070.5413 37877.4883 68232.5345 112107.6041 23463.4157 23796.7927 377564550 poba Organic Remediation Aromatics Aromatic carboxylic acid Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 18958.2665 20191.3763 23780.7501 42517.1006 11315.8422 15192.3511 19386.7486 7545.8995 15587.716 29818.8378 12059.5792 597994.3559 26790.0854 31642.537 48892.7019 28732.658 28732.658 17850.2066 31903.9193 17711.1003 28892.3842 33550.6965 28262.2618 9266.2641 12548.8805 29749.4995 9781.6543 66764.5862 26411.9124 29433.2529 13283.0086 117235.2863 13064.019 9486.8434 24804.793 50982466 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8063.2813 6642.9757 14209.8709 4717.7345 18796.8341 4486.6767 6081.2779 11500.8471 9028.011 258427.868 19908.7462 29141.2135 10793.0534 6412.5725 6412.5725 9900.5078 24941.7981 13776.0135 4592.2837 15554.9496 11901.2316 10794.5468 7136.9241 11361.888 12746.1901 13486.9246 6295.0598 19600.2939 10348.8023 17196.8746 43107.257 4643.1738 10813.7051 319652132 Sir Sulfur sulfite reduction NA Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 10860.1051 6766.4938 9802.3419 4414.3196 8907.2103 5704.2313 9297.8741 9578.3076 6556.5926 149538.4315 12522.6233 7571.4789 9230.4165 3968.5937 3968.5937 5918.5339 18771.8902 10194.587 48570.557 8186.5953 14549.3365 5183.7069 4797.7693 11632.7229 5885.1167 18324.0241 11854.6127 20112.6256 6980.4687 145732.5135 7691.2035 7966.2213 14031.8155 388457354 scnabc Organic Remediation Others NA Fluoribacter dumoffii Tex-KL superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter;species:Fluoribacter dumoffii; 19556.4617 12176.0435 7187.3463 9127.9917 28432.6053 6281.4219 4875.9526 13058.0138 4522.7836 8808.2362 9814.63 8083.4075 234042.3979 16719.684 15826.988 14782.4863 13063.3765 13063.3765 7397.4895 19277.0831 11540.1487 9933.882 5446.168 18846.5736 6247.3589 47948.5322 17920.2323 9201.5815 28507.8848 19668.2644 22490.8964 7355.279 10349.7599 9841.5487 10250.073 14402.0519 88186476 endochitinase Carbon Cycling Carbon degradation Chitin Sanguibacter antarcticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter; 17218.2276 17286.2986 11417.7055 31884.9084 11155.1993 5088.7457 9543.0719 5221.0641 6742.1183 6700.2644 7041.3442 189930.5737 10737.2591 10645.416 9654.3639 6964.6481 6964.6481 5915.9622 12210.3917 6255.8985 11607.4269 10251.3648 10175.9628 4294.1674 5792.4749 18933.2311 5766.5361 29379.6285 12757.2339 23803.5017 7131.4733 8708.4433 6380.1015 6587.9618 32849.5005 27375218 ben_bcla virulence NA NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 111352.1124 58894.1437 14198.3143 17598.8013 20186.0463 11288.2831 27870.5418 15763.3728 51348.3868 167468.8446 40921.3293 690366.3155 23350.2413 21900.2753 65662.7189 17573.368 17573.368 21827.0792 45264.428 26146.0558 32525.4099 42969.2799 40651.8983 19568.0588 31147.3452 40324.5194 20179.9337 57069.9841 16823.0383 27808.1133 12539.866 29079.7251 19760.6725 20599.6003 62952.8523 88643257 dsra Sulfur sulfite reduction NA uncultured prokaryote 60807.0851 10547.3702 217763.4586 42146.6635 12592.2679 11319.1562 311055.1503 51451.1311 51403.2217 16297.4273 210634926 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 5442.8495 15289.1652 2766.3821 5997.2511 3129.645 384389.1822 15279.8642 6369.1479 6369.1479 6158.817 4217.6184 11378.9397 6155.2267 2086.0588 11290.3952 6652.6581 2333.22 3191.5462 4314.5333 87284678 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5797.5411 6481.1747 3440.813 2921.338 3785.2596 8718.7474 4945.6678 4542.3381 6743.615 6743.615 21522.1785 2378.4249 3403.2123 13073.1703 36680.4621 8588.7865 3461.273 3344.0327 3883.4122 2659.373 343095692 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7500.9042 11720.7996 2239.3852 4739.8273 4204.4922 4653.1835 2444.2027 2444.2027 6453.93 6313.4938 5741.543 9784.2604 2322.1545 115390368 RgaE Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 18287.2675 107434.4017 161978.129 230702.2193 10425.7905 521310.388 19858.1058 5140.9025 17737.9387 16095.159 35329.499 267722.6346 17254.9061 27289.8581 23142.2417 12706.7034 12706.7034 36141.3239 28409.0285 19593.997 13621.7657 28107.7778 24644.6917 14764.1451 11075.0896 23175.2008 25282.4589 32909.142 21726.8032 22259.3821 27256.9283 17730.1752 96206.5041 17481.8902 48939.1515 283474200 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 225915.3326 46325.365 18056.2207 23800.0747 7605.0981 6796.4863 10588.8154 5331.1386 11139.9271 16545.2224 21256.3219 229553.1755 16735.515 64904.8211 42374.1223 32843.6204 32843.6204 11098.3087 22851.3398 18183.5618 105577.8238 33651.9432 71372.5923 36172.2947 25639.7845 23159.7382 9811.9009 34898.5889 16328.0895 20630.3017 8941.17 45429.364 40785.4186 29184.3962 15714.6011 32895014 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4844.5474 2267.4352 14338.749 3819.6519 3823.8188 11484.8237 8945.0583 2353.5747 3978.8198 3523.767 2169.7941 312869125 amyA Carbon Cycling Carbon degradation Starch Lactobacillus oris PB013-T2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 22387.5782 50979.5567 26198.6286 38555.3833 16892.2423 19323.2166 33910.474 7072.4861 20771.1895 29776.2372 36769.5836 417583.8146 34517.6503 194970.5757 29130.6256 24288.7355 24288.7355 53722.6743 34825.9157 24487.4853 19703.8513 24571.1368 80771.0774 20336.8678 20075.627 26725.962 13134.2935 498236.2105 35060.1734 74619.9863 14345.5076 29258.2467 16988.1281 32342.6866 61502.1067 377559552 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 50615.1498 16256.0957 28806.1197 13311.7464 12540.571 25831.1749 73268.3885 18154.4313 134386.0066 35712.5529 26636.7899 406030.7781 55612.8595 48483.7499 123764.2802 27146.1636 27146.1636 18199.8242 65179.9175 37942.3358 117660.519 57779.0451 41952.7853 28270.4219 21136.2027 29886.7396 22032.4379 92319.1015 46534.5214 56711.3209 16535.0314 22944.1577 43715.7456 19096.7757 69689.8503 91203550 hzo Nitrogen Anammox NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 4708.1118 10193.7216 37447.0257 6521.3339 5665.9343 8757.544 60177.6627 7581.7741 4819.4365 6548.8537 5936.3087 5936.3087 12643.9643 4496.1903 4848.3862 4475.0741 2626.4312 4156.4037 7843.4792 3036.7284 10052.7471 5034.0594 6385.7559 3175.8821 3787.0021 4840.1173 9257.8557 383299078 terc Metal Homeostasis Tellurium Detoxification Candidatus Aquiluna sp. IMCC13023 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Candidatus Aquiluna; 5028.7527 3524.6598 5476.4692 2937.5307 6934.6032 5264.912 4071.8983 7679.0147 8401.958 2463.6638 3061.8668 6647.0192 5256.1074 2102.4072 3964.1537 4265.0567 2503.7675 8546.5683 86136639 ben_bcla virulence NA NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8548.322 3259.8561 5520.2257 10769.837 87110.5752 4164.4416 3226.0673 4428.8799 4720.5614 5277.8988 2941.3504 14321.7533 6058.5503 5882.3297 5321.4624 3181.5685 9450.5135 73762806 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7286.0915 3177.7484 2803.9265 2819.8299 3686.1609 4244.4196 4721.3704 3928.9216 6200.9987 2392.0183 2392.0183 2914.974 11522.5464 6677.1294 3800.4672 6123.0022 11699.9167 2502.6206 2799.7573 6526.3307 4073.5922 34768.8604 7068.987 9732.4266 2984.6616 4943.6636 4358.8412 3137.0983 12417.8907 261357289 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 44410.2482 69556.1131 39312.8608 22346.1635 14178.4949 33170.923 19747.209 36875.2859 25706.4979 21041.632 35228.0461 664659.6513 29335.1633 40233.0432 32958.3599 21549.8238 21549.8238 22904.0441 49066.6996 33821.269 41562.7625 47867.5467 46685.9987 20384.4592 21523.5927 37780.6574 20201.4793 142424.7229 85917.9775 38186.4806 18843.9961 28763.6264 19891.5704 18795.0952 234054.5436 57233724 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 11505.6594 2168.2444 4503.7622 7773.0236 4058.1595 12876.0503 8327.526 3114.523 9071.4347 6423.9097 10188.9233 3239.9943 3239.9943 6721.7931 12097.169 5352.7881 19259.1881 11734.7624 8307.2139 4099.7998 5056.3799 6356.0141 2747.4492 16282.843 13821.5776 8996.371 6103.6081 6976.5181 10270.2548 3930.5512 5475.0729 315447245 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 21442.6232 12932.32 6636.6003 9163.8214 7210.2889 10288.8466 9858.8388 10419.9762 9276.6833 35417.2424 220024.7347 12562.3989 9732.1127 8161.9995 10381.0214 10381.0214 7226.987 17426.5393 8640.1922 16846.3284 15166.8758 13539.6473 9394.8825 6621.6713 18728.5238 9681.9159 98141.6594 15175.6285 18650.132 14643.7798 7802.3881 10799.5234 7899.8685 18905.4761 312280978 amyA Carbon Cycling Carbon degradation Starch Lactobacillus delbrueckii subsp. bulgaricus ND02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 7098.5176 7583.7594 5845.6709 10256.8868 20495.8667 9673.5942 10073.3691 19999.6962 201422.1324 9643.3422 10064.9991 11430.9909 7168.5949 7168.5949 10220.822 55517.769 14198.1217 11475.31 12335.8421 57352.5965 36198.5116 8133.9481 10666.1578 7406.5078 52897.2294 12473.9819 12331.2983 5457.466 12050.4602 11956.023 18844.4786 15052.7455 221726428 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 34359.7674 25123.5702 16148.3212 22301.8208 24456.8301 29006.8419 19578.2835 25568.9819 25568.9129 11380.5722 493223.3673 24969.6289 28888.2008 22454.006 17401.4677 17401.4677 14878.4464 41447.9365 28973.2567 44344.9876 31459.975 45905.798 14162.5853 11442.9254 36828.1768 33814.6292 75859.8353 31869.6691 34206.3543 19037.0541 17804.035 23925.2014 15068.3373 36507.4055 388545816 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5151.4613 7393.9049 4394.4451 5051.2762 6293.2277 5771.2104 10344.859 8526.2007 3491.324 12198.4542 6078.8384 7439.219 4665.2201 7017.2297 3518.7205 3124.7951 7806.125 46200720 tktA Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 5117.0238 32436.6203 12568.6169 8066.6884 61208.2853 4735.1672 7297.9688 9924.112 4414.3972 321785.5601 11067.2853 5777.613 8187.8936 4033.7698 4033.7698 3912.146 10298.759 8510.4843 7886.7418 7091.0878 6919.336 2692.4902 4484.7548 8905.8556 4660.3384 15359.2162 13926.4328 8417.581 4001.5244 4776.6862 6199.8075 6515.1203 477081.5887 29605977 cysJ Sulfur Reduction NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 12818.5007 8100.0221 9651.4718 4871.3119 8736.0303 11757.4201 4737.5878 9865.7035 11479.0934 5808.0303 133236.9939 8647.5199 17797.7841 7863.6038 4800.6738 4800.6738 7992.3591 14489.5168 11197.1144 15251.2247 12970.6433 17370.6637 8268.0702 4505.6854 14296.6177 6171.8393 21108.8086 8453.0029 16010.0563 6331.6797 8888.4368 7964.5126 8768.1315 15511.8364 262635626 B_lactamase_A Virulence Antibiotic resistance Degradation uncultured bacterium superkingdom:Bacteria; 4907.1333 8326.0203 28175.8564 11293.6352 2714.4166 5019.5099 4603.5105 4895.8163 3284.4309 148918.4784 6904.8157 8462.2903 17851.3284 8538.6568 8538.6568 3521.1434 6994.2988 6599.7459 4594.1047 4990.5018 4605.1736 11369.5133 3152.4256 12390.1587 8810.9965 9375.3914 4544.7264 4535.1054 4941.8624 8759.7499 7660.3972 224962625 cysJ Sulfur Reduction NA Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 65150.7331 10837.5898 87208.5956 11645.9284 23863.001 25773.2346 22878.5333 30047.1266 19942.0719 750918.8397 40979.9425 19525.5821 16426.2173 28379.986 28379.986 11955.1029 35624.0126 18145.7722 23892.7927 19290.3383 24927.1799 59844.476 15383.8863 17109.9263 23506.7091 98181.5752 53517.3997 28200.031 11993.189 23042.195 29849.85 24867.8511 26902.966 262199668 mer Metal Homeostasis Mercury Detoxification Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 90368.1191 29755.7052 4701.1932 144373.4169 6823.2519 12284.9366 19868.8772 4204.1809 34230.211 34295.2615 17626.2651 259440.5371 37326.4814 14739.4713 18862.5423 40431.153 40431.153 15491.9532 61415.484 8462.2435 74309.522 82934.0258 19263.7076 7985.8115 19022.9487 15425.4797 11056.5451 27677.0618 42883.1498 18397.5849 12272.9082 35417.1089 34190.5168 26892.4608 96294.3303 345868906 terc Metal Homeostasis Tellurium Detoxification Bizionia argentinensis JUB59 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Bizionia;species:Bizionia argentinensis; 19414.6396 14188.8303 8573.3557 10514.3978 18819.7721 9490.8685 8335.992 20666.1821 4408.7898 218239.8347 10317.2089 13530.1967 7216.7051 5753.5967 5753.5967 6297.033 18022.3324 10626.6048 17548.5085 12997.5027 47256.5524 12605.3688 5878.9593 16635.9576 5863.0955 26919.6017 11594.7831 13403.4114 7356.6234 9962.7467 8472.2882 6081.6507 12452.4992 148260224 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 4579.9804 7703.712 16816.4463 4393.0363 5044.867 3880.4683 3614.7066 4599.0138 3424.3143 111960.519 4931.1528 7612.656 5150.3728 4651.0314 4651.0314 3296.4788 9450.9613 5100.3653 4429.0162 5352.4336 12365.1776 4740.6908 12685.3198 3888.1882 13309.7855 10734.0131 13349.4808 4202.0635 4968.3417 40936.0486 2434.4686 8612.632 40787185 dsra Sulfur sulfite reduction NA Desulfatibacillum alkenivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum; 9939.5906 12284.8378 5679.394 3725.1769 28450.2612 3309.411 3309.411 5603.9669 9577.9081 4344.3413 5391.9025 5355.3256 3323.4232 237801053 cmci Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 6887.7156 6461.9986 9082.9595 12565.7925 21941.2805 6416.7911 3603.0213 7649.1359 9414.2016 6752.1241 128955.3257 8499.4867 8054.4494 4507.4042 8826.2242 8826.2242 4853.9838 12824.587 9684.6875 6102.8185 9546.5066 12353.4326 6381.402 3519.4717 11685.0309 7999.2204 14592.5102 18987.5233 13164.575 5173.0043 7062.8882 3972.5039 7553.3174 48296.3029 144576216 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus lucimarinus CCE9901 NA 15747.775 6727.6622 21406.2481 5294.6591 5565.7167 8964.7922 3706.3378 7227.4525 14304.0684 11272.9943 160582.7148 11934.2422 12471.2853 10781.5754 12483.2833 12483.2833 7469.0872 17114.2478 13839.6093 10020.3064 28562.2328 13618.1687 7610.9833 11417.563 9132.3528 7811.0777 72972.4707 13101.4101 15460.5315 8455.3125 7718.2886 9583.4562 9085.5727 20470.6524 328803686 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 50859.5807 118802.6561 11286.8411 20435.6783 14758.4242 19721.272 16455.8731 24427.7961 15261.964 19802.6617 19467.677 29238.2851 388403.856 26827.3376 37180.9049 24988.0571 18226.2477 18226.2477 46447.779 45454.9694 33434.6463 91279.7708 53541.455 34103.4163 12068.0913 22093.638 48970.4109 16947.6624 144351.6155 38311.3738 99792.4424 19782.0466 31487.4061 27111.5051 45340.3423 41977.2606 77956457 nrfa Nitrogen Dissimilatory N reduction NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 150412.7735 34174.3446 9079.2608 16445.4326 64626.547 32571.2703 197858.3601 17739.2499 6168.5433 7878.3812 15748.8522 13570.8866 409171.0095 20897.8442 112390.4458 19015.5244 11975.8702 11975.8702 4440.1708 22437.8424 14646.635 12279.8227 12468.8654 29493.4294 5105.7259 9872.2053 34011.4802 12038.3551 40313.3127 21979.3642 37447.6109 11905.8189 35542.0784 12313.4951 15966.2215 11554.897 289208329 SoxB Sulfur Sulfur Oxidation NA Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 46161.5958 11701.7971 23221.4368 44675.7188 46298.5157 5425.403 14475.5601 98678.6272 8224.4265 12610.2747 22058.7486 19389.3916 415305.4565 33933.0349 33958.5594 86814.0348 22943.6071 22943.6071 16663.2477 48916.6989 25818.8467 87076.1595 47667.4445 48842.2601 19355.1931 27440.307 27687.9031 19338.46 65798.4765 45529.4848 37447.7085 185128.312 25935.7996 41626.5067 15193.1558 46886.4007 312174600 mmox Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 31521.8677 30559.3196 12242.6026 25612.4002 15780.677 5609.5215 31154.2453 11673.1081 14455.593 13332.0128 18583.7209 17252.4987 654837.2479 17367.5034 14536.2134 32748.9797 20320.78 20320.78 12395.0685 63904.9286 18732.911 17583.8625 31441.9263 25921.1631 11244.9481 10421.2691 24679.4896 10025.0717 48316.6313 24524.9972 30654.3842 10530.1325 26831.1389 24237.0922 12119.5489 12419.6897 392722230 catb Organic Remediation Aromatics BTEX and related aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 26692.5357 7414.3734 3286.0394 3286.0394 3404.1074 289705224 amyA Carbon Cycling Carbon degradation Starch Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 52953.6064 15765.9998 85376.2529 17885.1083 31245.5828 8444.2385 34436.7068 42606.9353 46969.2553 36036.7625 21657.1655 61248.4541 1298730.7754 32422.9477 235295.5146 109500.0345 100579.3011 100579.3011 38960.9201 129643.2562 29694.8476 46644.4295 76076.1288 23909.2413 35378.9294 48750.3259 27988.4632 24547.8299 55252.3541 79220.9488 79655.7702 20770.1061 36497.8502 92946.1859 17161.806 32681.4868 459864 alginase Carbon Cycling Carbon degradation Alginate Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 33405.3274 27835.4877 36591.1588 34729.5204 8450.8666 24967.6004 42053.7698 15600.4246 32535.4107 34483.5282 15723.0105 612417.904 33747.431 28784.947 45145.138 73822.641 73822.641 22948.063 40934.4322 23895.6031 25617.456 40788.0814 40683.6929 38053.9552 16387.7756 27120.1202 14421.3193 49618.7422 27855.5698 34003.5877 15342.4632 18678.6359 22669.7886 19226.6078 52438.0582 255319335 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 11497.0025 4282.1298 2423.2938 2493.0673 6014.9675 3606.1877 9410.4361 20451.7282 5165.0234 5165.0234 3698.6908 9690.9775 3752.4122 17367.4454 7732.2575 7374.5639 6098.3794 7616.2239 3657.0093 330428551 terc Metal Homeostasis Tellurium Detoxification Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 79439.1246 56287.6841 95389.4806 119189.8799 86974.9827 87272.4717 133851.695 69925.3265 56905.4827 121615.5745 95474.4981 53003.2966 1841640.5728 121315.6519 87757.4855 210224.3207 84028.0122 84028.0122 153789.3302 108534.0323 62767.4316 173310.6738 79526.6663 107843.6022 43301.3485 37387.8594 98342.9487 58807.7562 168694.651 82640.1782 92922.3207 41864.3442 66809.205 54436.7345 40355.0822 96405.2264 114706915 arsc Metal Homeostasis Arsenic Detoxification Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 4469.2854 9252.7993 14447.077 11596.1503 3897.5348 2398.3898 390959590 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 4386.8409 22979.5862 15785.1863 3651.8822 5820.8721 7144.0647 3478.9085 119314.229 8088.6638 4361.8709 3284.897 3284.897 5415.327 11544.0976 7886.1569 5942.6895 8987.0342 9049.3053 8308.7979 4401.1678 29334.8331 7852.175 18757.6299 21721.7299 12110.0478 5457.7093 7904.8636 6656.1259 6598.0776 11406.7103 269792113 arsm Metal Homeostasis Arsenic Detoxification Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 5127.4977 2220.4957 3309.8687 2015.2329 2015.2329 7360.7369 18646.7212 315801.3864 83544.3671 11729.1923 358459828 alkb Organic Remediation Other Hydrocarbons NA Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 13532.6608 32120.8158 5156.2318 14926.7829 7109.4416 3629.0956 25911.1646 3079.9909 4068.1029 14914.8119 6003.2971 118913.0795 8859.5312 8732.8731 8144.7375 5456.7301 5456.7301 7059.4066 17943.4279 5021.7503 11450.2026 11454.1249 6505.5501 4546.397 5980.2709 25223.3777 4059.8343 17071.4204 6848.6407 12577.1497 3669.7072 6102.5701 6115.2592 4373.3902 5547.9773 167645877 limeh Carbon Cycling Carbon degradation Terpenes Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 4717.1553 18759.1588 8694.8172 4695.5376 2833.1817 3475.1123 5042.6574 12885.1597 5104.718 63249.7147 4153.408 7923.1711 9507.4831 8762.8562 8762.8562 3648.3921 8357.1287 6057.6976 5998.0541 6675.4963 3302.7582 5608.9818 8697.2179 5930.922 15982.2859 17729.9917 12199.7528 2375.1528 5184.6384 5313.8281 73748156 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5331.0807 100373.5016 4183.3101 9158.4824 9158.4824 8102.111 22632.6601 5785.9962 6137.9868 3205.6711 284821834 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11739.7877 31886.2718 10624.3106 10288.5507 11352.4634 8620.5652 8852.1891 6620.0436 12319.1788 20850.9858 7428.2086 362645.1183 21792.0345 17423.7919 8048.7706 6489.4941 6489.4941 12590.5053 22787.0618 14368.6196 14807.7222 24126.983 18589.7259 7231.4914 7040.5015 19871.1403 5026.0643 23207.6955 10203.7264 18233.2335 41197.1257 9316.8463 11723.1354 6680.4196 25989.8607 333488464 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 142228.3201 49258.533 37245.1959 144007.2116 13824.01 288024.9209 65221.3508 60709.9276 151019.8859 89676.9254 102188.537 713908.5652 77854.5979 144142.928 77325.6417 86521.6924 86521.6924 263094.7921 181400.8828 78246.3013 194584.7589 112270.4026 66682.377 193904.2382 85179.7545 97266.3729 107487.2427 237129.8072 78489.3864 359622.5212 42912.9262 88103.8887 71416.3776 68606.3317 549551.3859 393165366 terc Metal Homeostasis Tellurium Detoxification Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 35870.0307 22526.9255 15683.4597 19865.7726 888187.166 106894.4791 94321.9985 13282.0623 10937.1016 12791.7216 9259.0968 295660.9001 20982.6638 13673.783 9899.0819 12071.0625 12071.0625 8531.095 34349.6514 18810.3708 24080.5356 33527.9851 47965.1855 12047.6768 7878.4083 34933.3873 19557.7774 56816.2661 28333.8616 32039.4542 15407.3789 16891.8675 10710.4913 14351.126 25136.8389 78185810 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9816.2522 18659.2995 63521.6711 14081.2721 5531.5588 6559.3047 5581.7145 2827.2316 7928.1939 18555.5588 5772.4392 167112.1959 12236.9294 11982.9755 8069.5121 4376.3166 4376.3166 6857.0628 29772.7104 16541.6255 9132.0708 16960.8798 10525.2471 6571.0121 8694.5139 22960.5974 4954.3247 26950.8077 14150.3402 19317.3992 8275.105 7438.2583 10706.4733 6020.8299 12361.539 86164313 aoxb Metal Homeostasis Arsenic Detoxification Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 4824.1071 13913.8649 23933.8883 6065.1289 4726.4637 6629.8032 3282.9064 6971.9203 5966.0816 15912.4626 2872.1738 2872.1738 3204.2158 16977.7858 7189.8823 6679.3084 95259.3015 6108.8264 6088.896 4051.8362 5229.527 4442.9996 11268.2224 8429.8021 6887.1934 2472.3952 4498.6536 8915.1905 4594.7928 6234.1396 12667608 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr626-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 4879.7144 7020.6169 2586.1302 3390.1096 6053.8909 4127.0485 3259.7074 5363.3752 4979.1505 5203.3399 5203.3399 2938.0118 8000.7117 6579.4806 3946.2948 5574.1845 325322.2727 3255.9725 2790.8522 9884.8191 7247.4594 5778.3612 3111.6897 3750.4684 4422.1638 3599.6098 5427.29 346992529 TIM Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 43203.0266 12358.7448 101293.9345 24135.4981 154711.3504 29907.3189 15448.152 24455.6091 17458.6363 20880.6586 16000.5101 26482.0899 454893.1236 43673.2208 28479.071 17409.5268 24338.5617 24338.5617 13541.6932 23612.108 27314.9665 26312.9844 300142.9522 133627.1665 14433.1316 42480.9604 37544.4308 16261.9766 56821.8914 31677.6202 70591.9958 17205.6594 65874.8959 78049.5275 21572.7458 23616.7673 379257230 pcag Organic Remediation Aromatics Other aromatics Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 4438.1617 10511.9685 7044.9133 3309.0746 8471.4294 2995.8165 102586.0817 5690.157 12121.9865 9420.8475 4863.5301 5958.8364 4862.5302 4700.4902 6402.9316 2549.0758 9893.4371 6716.7645 7937.335 2154.6049 3036.3445 5179.2952 2330.6812 343919567 PRK Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 24687.8034 13488.5494 36207.4126 16296.8406 9078.5633 30355.6281 21421.7811 10375.1401 19891.9052 151454.9507 35016.6603 1205520.8581 22366.8517 31986.9417 22829.5153 20837.9731 20837.9731 13864.6928 563405.1457 34482.6944 40907.7188 19655.0757 34698.4737 11611.9871 14725.3162 34048.76 10286.6794 27031.0936 17823.3402 27459.8049 12111.8031 13205.6674 19603.766 17993.9401 26846.5358 398211402 phn Organic Remediation Herbicides related compound NA Pantoea sp. YR343 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 46419.6389 32736.3125 27055.7015 42199.3613 9327.3765 27465.3502 30364.3132 28434.8962 30500.6905 31648.5936 27931.8901 307332.1024 39463.3755 15669.2614 39250.5276 26780.2167 26780.2167 20013.2353 59295.5474 37953.1656 27259.9862 55482.897 19775.6752 18183.8166 19902.2913 29738.4839 25587.997 49306.8442 28943.3879 36154.1631 15811.7459 19051.8406 18312.7687 21280.2057 43472.9197 340361105 ppk Phosphorus Polyphosphate synthesis NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 131655.5673 32681.7892 14202.1084 37098.0342 109407.4595 38528.6441 19530.8045 32820.4036 17568.7587 105860.5606 123992.1403 42857.9594 1483455.9375 53170.1954 55411.5076 372745.8383 62367.9304 62367.9304 67167.3003 41000.8332 25323.6953 53395.9267 36932.6716 21821.6599 21540.219 37502.5351 64907.1332 42281.649 70103.2773 29163.403 65445.6352 15598.6237 37565.6136 38146.7903 39361.4899 41523.0231 384217184 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 66428.9358 131460.2128 308467.5809 14437.3101 239320.331 12683.2128 27577.7914 79810.4963 53038.6609 36324.9206 64123.3819 33624.9411 809030.9108 53911.545 76437.7788 109714.6928 80225.2548 80225.2548 49437.9995 80047.7142 61391.0212 46416.2948 180130.9809 403226.6966 39769.9538 43938.6631 37653.6155 57030.6776 134191.2768 72872.9346 77730.3071 55948.702 44188.465 73797.3945 46670.0152 64658.3622 333939511 xyla Carbon Cycling Carbon degradation Hemicellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 15759.6434 5593.1569 19914.0936 218573.7231 60241.9546 33220.1652 34857.2345 16477.3635 23481.4885 33827.0968 24799.837 536064.0051 21006.8809 122438.1547 42488.4947 39114.1032 39114.1032 13233.0712 60617.3576 20545.3839 37733.3759 24385.3032 10533.9036 11186.8512 17571.4249 39046.9668 57489.3991 112522.952 67726.859 44371.8354 36154.7769 28511.1633 22651.8674 135000.4976 42325.5874 147886238 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5251.6725 82809.8885 5084.5951 40272.9083 15023.637 3150.6956 4752.5299 16584.6489 16584.6489 8617.3029 5401.9132 8787.8093 11274.1823 4567.0403 2428.4368 4619.3205 5768.2303 10093.8318 19367.1542 6635.6683 5999.9907 3504.0313 4070.8433 4955.6019 6408.6995 6581.2794 296283160 nifh Nitrogen Nitrogen fixation NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 5100.41 9096.2495 13747.9749 4787.8633 2675.4958 6064.8996 4602.6819 4234.8513 6552.1884 3328.6809 154596.4915 8618.5323 10119.0908 4998.6789 2939.2814 2939.2814 19494.2889 47973.4166 5865.2127 15046.9191 12274.6264 19342.2464 6273.0598 13526.6762 8376.4818 23826.7733 37307.1505 11935.6117 10979.3163 4021.518 10405.7296 14881.9848 7098.4014 8201.4487 59892666 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 4364.5525 5404.0575 210382.0474 2487.8345 4378.9639 3068.7161 161340.4203 26311.1751 8254.8759 6793.5386 2446.6384 2446.6384 10681.1208 3983.4239 4997.0309 3961.623 5217.0098 13404.2086 2409.6443 13374.096 4292.7787 12758.3406 1683.8249 5133.1528 8236.2448 376372758 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17040.2812 25656.1884 22825.0945 9566.4444 6717.8544 19407.324 63862.2692 11744.6331 12837.4685 45593.046 16967.4579 294101.6385 17923.6298 21650.0403 73962.7037 32260.5366 32260.5366 15312.1568 38043.2833 13813.5975 18591.1913 27236.5251 13386.8032 13510.9417 26647.753 23520.2056 13348.0641 47057.8847 15836.1052 28697.2849 14846.6717 27739.6148 13363.3394 14119.8627 38568.1567 70991028 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 5828.1654 5697.722 9802.6986 7355.2974 7398.2783 3910.6284 4430.4256 105238.049 5995.9651 6413.7286 5916.2828 6068.5536 6942.211 12657.2055 4990.5765 8722.9512 4036.2027 2842.6081 5204.4924 7140.843 333487884 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 88199.1809 24414.1409 76079.8599 294213.0188 86456.4915 53067.8709 24238.0211 170870.6794 32890.7394 31528.5221 182986.4715 59264.3662 3449830.9388 99303.6261 107252.3384 96835.1844 81254.7735 81254.7735 87106.2199 90537.4503 41987.4776 204789.3124 122542.6522 36210.0633 34651.4104 71051.2903 159177.2049 59423.8722 132277.2201 81442.4491 101286.0027 26897.3564 60367.8657 65820.8588 32029.9478 88722.9315 293613638 amyA Carbon Cycling Carbon degradation Starch Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 4074.6551 2341.9645 2341.9645 9662.0257 4336.3707 12009.7711 3602.6887 5112.4237 84509331 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 23982.0156 2520.0516 3384.9475 6696.4435 14721.2252 6129.7871 150546.9719 4195.3031 7698.9719 7698.9719 13520.1399 4622.4089 4165.0803 5103.5616 9521.9624 5890.5137 1889.2733 3186.1859 3655.6695 6178.2051 4754.5432 121701157 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 18351.4495 7641.5143 9151.5457 15359.1896 14556.7834 18853.1846 4704.424 16076.3768 10425.0253 6390.8119 217258.4115 13876.3337 29708.4867 10795.3349 21281.7177 21281.7177 6326.6191 26573.9546 17701.8632 9555.832 24948.6608 36921.0786 31673.3719 6599.2392 14678.0489 19738.3597 23199.086 13367.7903 36948.0612 11537.7533 7117.3253 14317.1199 7553.2845 25406.7478 209958930 cysI Sulfur Other NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 470752.7579 152171.4181 194442.5444 772806.0515 2663417.4801 691614.8049 264762.7446 500481.583 228440.6639 517745.4076 409718.105 223913.2815 7167091.2869 533869.2579 451807.6944 564657.5834 359201.3756 359201.3756 282284.7346 468801.0444 186143.1325 216551.1698 347423.8162 448728.4245 197396.3354 195486.2432 607744.4097 282966.1436 843922.6508 474613.5154 422893.2891 167187.4929 194813.6782 329833.8253 185430 735013.6109 402499707 ben_bcla virulence NA NA Rhodovulum sp. PH10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 7195.6061 15077.4688 7311.4072 6352.1172 38266.4583 5403.2423 46627.8426 3925.2469 8186.2487 9526.475 4393.6349 94664.0869 6875.6584 7829.8852 3682.3403 3682.3403 4482.8258 19939.9148 8007.8092 7091.5432 7238.3115 5034.6603 3120.6762 5188.4664 12272.0352 6199.6942 26961.8359 11919.7348 12461.7026 4887.3204 5247.8627 4486.2979 2715.2545 62062.4475 339479848 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium breve UCC2003 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 22961.5668 17927.4357 18042.2268 73772.2715 86329.6173 10612.9499 32729.4127 74921.5509 130956.0756 44488.6756 23542.6693 1067335.319 166231.8827 35864.8201 34710.8914 58704.4991 58704.4991 18749.4195 34577.6881 27975.8867 87880.6176 73818.5135 110217.1834 15819.6726 33531.7108 122690.0599 14992.933 63436.1949 39057.8907 59066.2915 12456.4334 22946.0617 53779.2111 14857.0414 580758.8232 302336260 amyA Carbon Cycling Carbon degradation Starch Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 5506.9222 2697.5972 18663.1005 3184.3721 7131.4662 5512.9328 66218.4275 4894.8861 4453.3127 5422.4329 7181.5839 8989.8443 3072.5522 8196.197 15502.3129 10644.3555 16693.4211 7225.6216 4087.7186 5146.1969 81970.8839 6419.0625 242130367 cysI Sulfur Other NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4320.5725 3887.7574 3465.3564 4612.7891 5524.4656 2565.6105 91188.1276 7293.5463 3871.8746 4590.906 9880.2591 5691.6153 4513.2591 8383.5099 10809.4663 3688.5147 3117.0174 6683.294 3228.6519 11783.6216 3700.9222 6381.0721 2440.5047 4608.678 4811.6041 4022.2875 7851.5552 83634669 endoglucanase Carbon Cycling Carbon degradation Cellulose Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 10022.5274 12097.6279 22152.6007 5559.6139 5986.9975 5266.4868 6071.8281 13359.5898 4497.5729 110821.4904 11787.3321 7106.6872 8347.9443 6591.2571 6591.2571 3685.7428 10199.8423 9355.0576 190854.5246 4678.2064 2291.1921 9084.6252 17303.5215 4406.9173 16507.1538 18123.4512 18255.7979 5971.9713 5742.116 2825.9625 4487.2723 5733.0988 293602938 nitro Organic Remediation Others NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 4635.4268 7331.2752 77699.311 3069.2064 3286.6341 5885.1451 4375.929 8753.0417 6381.16 3249.4636 7202.3723 4942.4068 6205.7673 3155.2672 2230.9564 166364582 nira Nitrogen Assimilatory N reduction NA Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 3973.5126 25270165 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 16019.9044 6627.8616 38187.4376 6163.7189 17495.4562 94760.072 6555.1235 87006.6099 21558.2845 8685.5188 8685.5188 4618.2517 6125.3899 3466.9125 3566.2428 15138.3781 5352.4688 5399.5935 6294.1746 4335.6826 16328.2372 6101.6265 2903.1753 6341.4364 8062.7152 4198.0025 9786.854 284448026 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 9265.2792 20576.3043 7377.2458 11351.1118 7787.2438 4406.4973 7678.1184 13235.7002 5751.2254 163824.1463 9334.8865 12461.1389 9742.1833 4604.9774 4604.9774 5626.2298 21800.9616 10635.1402 11449.0717 15801.066 14291.6784 5715.4982 4811.1238 10262.0671 7899.2456 21733.4887 17075.6283 14542.1405 7049.7752 10333.6809 18269.1965 5702.36 30265.7621 383821565 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 54557.1723 132133.1161 41772.2398 63796.1741 18968.689 75304.318 115118.4638 15365.7912 47284.4732 63905.8713 66488.2289 616620.2261 74062.4885 28966.7752 76814.7432 39724.233 39724.233 23865.7755 68721.4498 39104.1808 27300.5492 156492.9662 32700.6706 22273.6681 94597.0515 47478.6873 28456.0936 85218.245 63858.5835 50692.908 20590.5491 34835.072 42877.6622 92757.5618 40774.0892 392245736 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium massiliense 2B-1231 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 5178.3117 4873.4697 5620.8835 2596.2314 444347.9085 3515.0095 20647.1444 5473.7706 4388.3295 4684.4109 43072.9863 2982.2248 2395.3125 9830.7941 7377.6834 5327.6464 2809.949 3938.0886 2240.7322 7991.5444 329848607 pme Carbon Cycling Carbon degradation Pectin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 5921.6083 6617.0403 17423.1185 5657.9339 6439.7805 5488.9514 2444.3138 5413.6587 56878.9168 5256.8349 215053.668 20319.1157 9050.0518 4249.2798 4249.2798 4365.848 8337.7786 7781.3612 6209.405 5506.0593 10482.133 2247.8199 10275.3036 12338.2838 4495.2565 11910.8858 5569.1472 8305.2912 5008.8809 6959.6905 5913.611 3468.7964 6169.1885 94983173 silicon_transporter Metal Homeostasis Silicon Transport NA 4180.7785 2796.4253 3335.1897 3888.1444 12049.6126 5368.4353 71967.1668 5030.6788 7060.3255 14350.7255 4675.6357 6677.2143 7914.9961 4507.097 25049.2918 12835.0054 3035.8109 3640.3615 8545.904 15541.0446 7865.4736 7205.1261 2648.2641 4140.8406 6916.7243 4323.5802 7302.5966 238934847 Sir Sulfur sulfite reduction NA Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 21285.4443 9065.2929 10731.4699 9193.5626 11654.234 8346.4696 6379.8293 12782.7111 15259.4446 8575.2087 373809.9413 18047.1571 16876.1562 27882.701 17293.3829 17293.3829 10606.6467 22519.0832 14389.0863 17827.6938 20462.7237 24710.4218 6651.6252 11868.3208 16619.3769 7375.639 30891.0909 10738.8681 17004.6811 6864.9345 12730.7454 10883.3107 8005.6075 24894.7796 289208858 tehb Metal Homeostasis Tellurium Detoxification Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 31558.8767 11147.7984 12197.5458 27980.8523 10278.8033 41980.2192 43123.7674 46207.6681 30494.6672 35887.6962 1439453.7147 22539.5138 19153.8786 18187.744 11660.2572 11660.2572 496862.6721 38015.3038 12329.0642 20996.089 30388.7541 13673.8811 10685.8988 11549.7946 27892.8823 10532.7862 56644.7559 21960.8764 19329.5346 5463.2808 14021.2848 14673.0255 18806.5914 24484.8513 339017783 ppx Phosphorus Polyphosphate degradation NA Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 101777.6977 19478.1232 36171.6565 51883.4728 22017.6459 45429.2724 75727.6376 144865.5294 63235.7778 44699.9217 70579.1435 3606184.3313 79967.2422 117712.1536 61116.0758 69374.2841 69374.2841 141427.8581 101082.0653 86719.7645 55319.7823 373636.1243 52509.5952 32882.3359 55286.1117 73083.7787 144867.7051 125028.8399 130328.9814 77106.3228 37388.3329 62196.6908 88238.8367 40500.7963 203577.9172 315589612 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 10121.3623 15393.4097 26189.8578 12378.5269 2668.6755 3150.1417 4593.5587 14319.9464 20462.8125 37239.4956 83777.9034 14333.7285 9320.4202 18920.51 17502.0121 17502.0121 8551.9065 48569.7018 7426.0299 6841.2624 26758.8847 8179.9549 8499.6316 12827.4819 27246.7491 9852.8126 31425.1964 67868.8719 17440.9927 4370.9506 12926.3332 17820.5545 12999.5087 9753.2332 260427271 tktA Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 6819.6089 8754.4042 3258.854 2444.8941 3117.1508 18170.4989 4581.5008 78925.4191 8046.5356 3274.9098 6120.0762 22979.9783 22979.9783 8370.4551 3880.1228 10767.5382 32975.8993 6113.451 3344.9095 3344.4131 6505.3068 4250.9711 9274.232 6319.8323 3192.5925 4948.6394 4693.356 3710.0758 7489.5269 319742063 norb Nitrogen Denitrification NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 82194.5235 109881.9935 54493.294 509531.1429 134364.4577 25768.1732 55340.8483 23238.179 60139.3202 119147.3869 64978.9015 1471238.1099 47250.4485 63298.3282 89512.5312 119894.0974 119894.0974 20865.4253 82163.7843 118323.8 28837.1756 97913.5161 53695.3565 116238.5319 39901.3871 70302.7055 37945.5058 99006.6132 90202.8656 78351.076 21922.5093 34286.2845 60631.9868 21000.0442 81977.0298 23100011 amyA Carbon Cycling Carbon degradation Starch Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 24989.5219 10804.0874 15510.818 18093.4524 13104.6313 20854.4598 11583.5176 10988.4402 21483.9648 21902.5854 10803.9462 535868.792 26561.6039 21446.2496 19608.2631 10184.1824 10184.1824 15516.3636 31922.7761 20193.5616 19568.3285 23696.085 27865.7589 9475.1189 10214.6779 26456.8082 9517.4988 36120.6861 21104.3115 25503.5054 8011.3802 11998.2091 13185.1478 8134.6906 34314.5591 209886181 amyA Carbon Cycling Carbon degradation Starch Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 37697.1463 74527.6839 51462.6438 33257.1769 60771.3162 70694.9929 63035.8906 24027.6383 117331.5445 134040.3823 61823.1879 634254.4405 41821.7568 92902.9239 89275.745 42535.2213 42535.2213 47075.2526 88046.1051 39253.4849 81136.7216 282366.8546 20272.0944 31486.0744 31335.5231 47614.1791 36032.7575 90056.7313 38331.1765 128884.303 19923.7844 29934.0004 242975.228 22388.9525 143431.4162 111918708 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 363219.8538 10268.4893 21808.8308 24904.7253 10858.7 17461.467 7919.2918 11425.4582 20866.7937 9867.5931 2932271.6548 14396.0664 23689.8213 11644.3221 25994.562 25994.562 10647.663 26001.791 13983.7237 24088.9588 52253.0522 17738.6227 10636.4696 22088.4264 25347.2269 19926.9511 81504.6175 25338.3663 58242.9054 15963.9446 19610.9444 9811.801 11951.2059 50576.6623 152146204 pgk Carbon Cycling Carbon fixation Calvin cycle Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 74753.5772 74527.6154 73774.0754 137864.5948 58565.1906 18966.9811 100022.9833 82127.9923 89472.1642 57433.6966 86343.9277 52683.1657 1498979.6662 255787.5405 79703.2128 110193.5546 107081.6357 107081.6357 57795.0688 172237.625 67750.1572 146194.3831 120904.9358 93395.232 47120.4229 59653.4648 116812.1381 39839.092 225565.2698 110561.0371 114647.5203 44394.4608 81322.0478 88765.355 48331.1311 128150.4908 389694462 amyA Carbon Cycling Carbon degradation Starch Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 5658.7853 16271.6962 23802.3661 4694.6943 3516.4354 10868.8208 3112.3751 100392.5971 4709.6679 3891.4617 4379.9727 3043.6888 3043.6888 9843.5233 4372.1704 9443.945 13959.4833 22633.7945 2635.5811 9630.429 7774.8115 5156.8276 17471.7123 3660.8887 6362.8381 6670.8921 2891.2794 6133.0693 4336.1929 6833.2239 374990867 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 6211.4975 175593.7568 8995.2498 5352.4329 3820.74 5155.0483 10561.6253 4053.51485 91909.56735 7666.6242 7720.8828 5201.9282 3810.35115 9626.56745 6686.83625 10234.19805 9434.5843 9011.2842 2286.91075 4307.0298 8133.4694 14830.91775 8489.9112 10067.68085 5621.38465 5102.9554 4815.95315 2726.37775 9201.40595 242264718 cellobiase Carbon Cycling Carbon degradation Cellulose Thermococcus sibiricus MM 739 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 27274.7649 12691.0389 15528.0638 17630.1557 11084.523 11550.7942 57156.5004 29785.1924 8774.1302 16104.814 18046.3635 10142.4945 280898.5779 18616.8847 13543.4961 18942.4211 11220.7754 11220.7754 52005.1579 28255.1769 18653.6535 35339.5042 32370.166 45503.7402 8950.4464 7231.5033 25784.038 6117.6517 28840.3469 21661.9723 28023.3092 9192.2637 14101.2687 13305.2379 10203.8469 23441.7594 380878361 urec Nitrogen Ammonification NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 5286.6224 5436.2254 13051.3413 2428.2649 4074.0982 2091.8116 6344.3284 16776.5953 4403.6197 274707.7889 5830.0346 6111.8064 7338.9555 4770.9512 4770.9512 4435.7677 9465.678 7227.6043 36520.6148 6916.4641 10091.6397 2806.6377 5189.9647 10922.6255 2942.3118 82860.4568 6490.4084 10807.6694 3310.8792 5193.693 5911.6128 2769.0975 23291.494 126236596 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 111802.9715 11755.5228 23196.5064 26690.1455 13431.2852 5548.2735 30123.0133 72098.6991 22731.4118 30159.3094 47327.1279 23367.8733 3448179.2976 29297.1935 28945.7426 29425.1968 20230.1403 20230.1403 23653.0368 48854.2182 34051.7008 32960.1607 55704.7 40634.4527 17056.7909 21433.8611 45981.3244 81256.1246 176023.9375 22602.7856 36531.4987 31626.6409 29443.1939 37521.3678 16555.5632 38634.9736 255020279 pgk Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 5151.5675 12339.2309 4171.3108 2599.3492 2009.6816 4477.7055 5721.0674 84216.208 4028.3923 4955.1079 3118.6907 3118.6907 3486.5384 12508.7904 4691.2557 7500.8065 4054.6546 4415.1037 3963.8934 3911.2225 10257.5691 6055.3731 10410.8104 2062.4248 5378.6487 6313.5606 2229.4716 8136.3306 358241371 cdh Carbon Cycling Carbon degradation Terpenes Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 7260.5256 6690.9642 12821.4011 6570.8665 5084.0493 3770.5977 5413.414 4841.1612 7052.8934 3755.8799 114002.6908 5628.5865 8576.166 10554.772 4792.7032 4792.7032 5732.4175 13790.0923 6805.5501 6987.9402 13933.1012 10188.6624 4705.8627 4144.3044 6841.8696 4105.2749 12694.6504 6397.9003 9162.4047 4660.2403 5222.1621 5838.4313 4673.9841 12444.4627 257049226 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 4371.881 4814.453 3037.9195 3527.8415 16087.262 6409.3749 4377.3269 5616.2033 12047.0437 3235.4669 5299.8935 5828.0486 2740.8098 6694.081 9432.3269 9628.5086 8167.1808 9014.778 2483.1636 6658.4444 3101.2663 2582.2434 7667.2126 94471239 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7343.4689 142462.0934 7484.3445 9874.8095 5904.8662 5975.3945 6983.0695 11792.9263 8028.1877 13331.3491 8418.8798 182681.3103 10634.9907 6917.1089 6405.6273 21631.9729 21631.9729 31967.179 13261.8277 12782.7444 10930.3428 9667.982 16740.6896 3927.5267 7237.5392 11050.4158 8056.4348 23375.0866 10653.6396 29438.4522 7783.9553 6432.9374 7564.4167 5181.9139 11439.9821 113935961 nitrilase Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 553126.4509 78920.9808 100918.1197 140539.5217 124611.0185 35818.1144 66859.5384 78641.4256 92779.0633 106665.7332 160732.341 63101.8804 2380858.7162 115995.023 166991.6959 162276.7198 253742.8287 253742.8287 63972.9418 122831.6754 81224.836 125957.0111 108581.085 94298.5264 79190.7122 65924.0066 112024.3337 63290.4895 213122.9136 104481.813 138812.5637 73507.4187 74192.843 81279.7435 48607.3283 143843.7378 90337528 soxY Sulfur Sulfur Oxidation NA Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 6662.2044 215636.0046 9234.6164 142758.9567 18691.4754 4341.6008 6440.5191 1961.0962 9567.6601 12653.8057 6695.3716 196125.5836 14308.4523 15298.1469 10982.2545 6578.0631 6578.0631 10642.5054 7783.5087 11297.2269 5292.987 4995.0681 12287.7886 3548.6668 7470.4234 20722.8312 7882.4544 42334.4466 17158.8638 19199.0051 14872.583 8987.2867 6573.6939 4906.4634 9738.7128 217337278 cellobiase Carbon Cycling Carbon degradation Cellulose Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 4155.8508 3772.0459 2207.1245 4465.8599 4919.5667 4635.0302 1931.6338 3119.0316 148260265 alkb Organic Remediation Other Hydrocarbons NA Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 3990.1817 6788.7759 4236.6019 7012.1142 2651.8595 2447.7043 4702.003 5894.7003 80809.4032 3686.0561 4078.4874 5881.874 3350.9237 3350.9237 2726.3817 10056.3451 6675.3206 4907.3333 5515.4978 2748.3491 8713.0876 2548.7402 12537.5738 6617.362 8014.2269 3320.6893 2972.5731 3285.0625 2825.1093 6612.382 359148130 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 52603.6466 179610.4069 15605.7819 13902.497 32230.536 28367.3219 31066.1168 23416.6255 47139.6124 43901.8194 584226.4745 294107.1964 37424.1812 31448.699 50146.0082 50146.0082 21888.6068 61953.1306 20666.3435 1386199.3012 113762.7511 31415.9047 35158.6384 28202.5803 35890.9968 33123.4286 95258.4468 19866.5169 29509.9145 13258.3712 24730.7489 40157.1631 17005.1513 77227.7438 90023510 chitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 17852.976 15630.6725 78917.4824 13484.9797 8321.127 14774.3498 11858.2882 19697.9719 14523.2276 21375.6631 174657.6986 15093.0626 21314.5738 31970.1272 41240.0011 41240.0011 7177.026 33386.1225 13021.3263 32820.0191 25704.3935 10910.1186 11695.5787 19208.9181 21967.3469 22949.6017 74486.1273 20158.9019 26575.6786 17963.5883 18856.0966 22019.3684 6663.6054 13103.6208 188533207 arsc Metal Homeostasis Arsenic Detoxification Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7126.9117 10792.5506 9871.1685 4964.354 10800.2858 13457.4266 38992.164 18017.6055 10660.2367 241929.5671 17483.3582 29645.3343 10517.8612 20501.9931 20501.9931 11343.8438 61549.9678 23024.7543 14602.5703 19171.7355 5132.6272 5003.7325 20518.0081 159169.3437 11799.7067 33210.2288 39137.9339 27100.6798 13938.3576 15478.6179 40060.3126 5548.5224 11045.1259 150385878 ara Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 11440.7876 29764.1233 3887.3598 9693.0963 3832.7637 7109.5066 8248.7998 9317.1213 70843.7984 4073.0395 8459.2486 6163.8413 6163.8413 5220.89 30302.6049 9685.3481 7936.8009 16828.5505 14373.3428 24010.6096 5718.1428 5299.8366 143419.9354 10698.2579 7337.961 2563.3031 6606.6394 18661.1704 312169624 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 4173.0257 2799.3259 3655.4777 3321.9197 6352.673 24272.4448 6019.115 105816.4933 4389.2427 5259.18 13572.0789 3660.5469 3660.5469 3202.8881 11249.1739 9599.2622 4695.803 6600.5084 2467.4651 4141.169 5678.3853 2564.3832 12011.5439 9347.7599 7113.2221 4214.588 10860.9362 4328.2084 3182.4188 6803.4588 359274989 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. PCC-N superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 72267.317 13057.4538 63273.6098 73188.8182 23717.1749 9685.0185 13474.5706 74010.1563 20581.0036 31809.7128 14459.5985 1413765.4148 36913.4238 17694.05 29692.602 24172.8702 24172.8702 9161.6997 15090.648 31719.8798 31230.5145 25267.1106 83843.9079 6859.4734 21689.5451 36128.5662 9497.049 50250.0856 50750.7547 36526.244 6656.1253 10571.3051 22444.6792 6897.5823 15292.689 329889707 mer Metal Homeostasis Mercury Detoxification Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 13728.8087 25569.5825 9027.7935 6946.3246 11487.6108 8811.1072 4182.5618 6122.9519 15349.2905 17425.6234 8690.8317 109049.8975 8205.4269 14090.3693 10729.154 4530.5128 4530.5128 7654.7015 17911.0095 9914.318 13347.8993 21223.4061 15289.0542 5056.444 6559.3719 15701.0685 6622.3253 28150.5413 8641.773 13389.8518 6678.909 7185.3708 12401.246 4880.5461 9779.5972 384040843 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 42915.804 40359.7167 8339.9953 66257.8489 167178.0613 23494.3728 19568.8085 23616.1648 21619.689 65333.0517 428219.4796 30308.1688 21156.724 42698.6601 54547.4669 54547.4669 17480.9332 182798.2071 8781.6356 36892.3853 189315.0811 36193.8813 20198.6648 72118.2418 49357.4363 26279.2007 61483.281 51239.2819 38533.5125 13424.6259 21838.9123 57212.7031 19298.8248 16553.8571 154149843 tehb Metal Homeostasis Tellurium Detoxification Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 4296.3925 3642.9734 2137.5053 2874.0301 10936.279 92003.6948 9971.805 5286.8901 5286.8901 2959.8974 8182.6484 4421.0192 9401.214 9194.8187 6174.6858 3122.1395 8720.7655 8988.6429 5300.7006 6610.0863 6769.7649 4246.1296 9290.1628 392289826 amyA Carbon Cycling Carbon degradation Starch Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 36982.7317 17256.2859 20014.4467 92791.3352 17532.2795 14043.1883 40389.6999 19355.2192 19780.985 142794.0346 168347.4499 667174.2538 44762.478 92551.2434 45408.2771 92275.31 92275.31 31909.1897 53797.5869 29250.8584 53071.6463 57618.7782 12230.4793 95195.9657 37191.2301 48509.2631 19225.7536 138363.0262 40384.8126 46467.4645 83283.1764 26527.1749 54633.5564 19298.1626 39485.9114 372272671 nitrilase Organic Remediation Aromatics Other aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 86326.7776 34315.4479 11225.485 21849.2571 53808.8631 8413.3224 12966.241 10933.3412 5459.3135 15806.6334 24927.8583 9290.8539 363093.3276 21322.7898 15794.634 15146.8347 11056.1515 11056.1515 12282.6728 37709.834 22828.5313 23504.2528 22000.9304 32278.776 9791.779 10916.9331 34885.3783 11609.9387 41529.154 34587.9928 25136.3977 14423.5422 14661.2329 12090.4699 13786.3005 64819.2217 166861916 cmci Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 16052.3282 6033.5179 13027.956 43010.825 5248.7413 5318.0896 16675.6028 2314.2183 37974.4485 28751.1514 14697.204 967645.3811 90256.8172 31888.932 30230.073 13229.737 13229.737 58416.6888 49030.1815 21334.6335 49329.0624 87309.9858 12603.0538 14480.818 14675.2822 20927.3403 29102.4409 30080.5977 17507.6003 36913.7088 8414.0443 16436.9447 19059.9555 31855.9483 15744.9001 365890040 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12423.1768 5491.4782 9175.026 9325.1451 33980.0366 7050.6097 7867.5614 11267.6954 24429.118 30846.2177 192186.6979 6745.2347 22027.5601 10724.7007 29734.306 29734.306 23378.9828 50462.1385 22094.5687 22194.9969 10910.1747 22909.2977 9380.4332 14407.4561 22750.4485 19794.84 40874.568 22925.7747 31092.7313 6469.775 14993.6827 62563.4379 4628.1624 11526.3309 73748499 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5995.2939 4544.8604 6552.2981 91786.9181 6525.0282 2986.275 79086.0175 6603.6128 9574.8376 4941.127 5740.5307 5740.5307 10086.666 8182.1145 2901.6185 4210.2029 11876.9247 82956.7828 18073.3466 7561.7607 7080.6047 2849.8261 6543.7411 16122.0632 22507.446 7773.7269 356881553 chitinase Carbon Cycling Carbon degradation Chitin Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 16799.713 15760.2275 17790.9426 14565.7581 9656.0718 5847.2364 9838.8692 20521.1996 7925.7171 35924.591 19184.6056 198144.2257 31908.3494 20899.9532 23672.0886 67124.3997 67124.3997 16487.1597 76309.6817 19306.634 15454.8618 154402.7754 25429.3182 14992.1883 17768.2838 148907.3702 24642.5955 33687.9539 12747.246 35845.7026 9418.883 53842.6135 25316.5913 9476.296 59496.0004 99080052 b_lactamase Virulence Antibiotic resistance Degradation Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 50167.679 53618.1428 41250.0521 52399.0775 44019.1772 44962.3355 32039.0163 20720.8499 107070.3665 77464.8907 119594.4973 41345.8376 1404512.0388 107586.6937 39657.0393 20392.863 21471.7114 21471.7114 36508.3137 86710.7392 54218.8823 112376.006 96655.8394 86987.8168 36589.075 23802.3826 76583.415 53082.6204 101984.0941 59430.471 73996.4506 24490.8657 31141.7633 52533.0118 27097.3227 71172.7464 148750449 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 41293.0517 70632.6864 17353.7716 5167.218 5968.0657 12507.4846 17266.0321 11348.1315 15521.5381 158414.2574 36543.8952 23488.522 7536.5959 7449.9335 7449.9335 4459.4893 16152.9517 13887.7791 5168.6387 11135.2501 6782.2337 21368.5436 7137.6368 10070.7981 53155.2701 8408.5071 16522.9369 15866.7394 8437.304 9311.4099 18851.2401 8772.8562 14941.4045 330992278 FBPase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 157588.6074 78219.0351 87079.4184 79785.6115 171816.8063 75623.6467 110786.0818 192730.4506 118900.6786 111978.7656 105750.8988 150996.4226 1705401.3858 116677.4865 116383.0118 317107.13 180784.1387 180784.1387 123029.464 234354.8302 137241.8811 301197.8173 285097.569 158159.0992 161016.2349 186114.679 203979.741 168833.208 536125.9614 188388.5731 245132.2953 106839.108 205529.2797 211221.58 159951.5622 410024.6505 354959399 chnb Organic Remediation Other Hydrocarbons NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 30373.5685 4894.0797 8529.4795 23817.1659 9570.4992 13024.0848 78391.8053 16352.3048 298753.6069 254561.2081 26804.317 17004.702 12698.9152 12698.9152 14250.4981 32101.5322 13655.635 14834.8591 20320.885 14666.8316 11303.7589 16585.499 19494.097 13370.5082 27012.4446 24675.1326 54751.6461 7464.7698 20036.0433 29405.1153 8769.5482 15231.6965 38569327 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 4912.3078 3554.5665 4419.1468 77972.7813 4023.3849 3891.8352 8185.2941 7744.5296 4204.5587 5089.3507 7458.0699 3530.5874 8672.7 2405.2516 10392.9723 6169.8999 7607.3626 2700.0937 3945.9575 3842.9237 9614.4175 302423706 pme_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 6513.1723 5090.5189 2116.5664 3201.7097 18959.5525 14602.5324 4800.323 4359.7696 4359.7696 4159.5176 3974.9347 7528.0665 3697.671 13159.3114 7532.3643 2427.8404 3045.3702 78693202 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5832.9567 37708.2516 5525.938 17083.8627 8333.208 5132.96 38844.7089 4327.7147 9249.009 3413.8522 102076.1264 6722.8262 8382.7761 7050.939 2521.2472 2521.2472 6252.4975 15287.4968 18403.0769 6398.3391 3434.1471 8775.5934 13155.0027 7862.7178 41418.6688 8822.2593 11147.484 7329.2535 7939.8801 3510.9923 2821.0647 6406.3306 27349259 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 152521.9445 32821.2306 37512.3205 38621.804 4953.2259 67657.9277 150924.5168 57735.237 33081.9131 63898.1877 62154.9393 642233.8844 41966.0444 179970.8041 55753.9538 91477.9336 91477.9336 30366.27 122305.7267 37989.3426 157776.8432 129301.0665 90035.5429 39777.9164 38144.4108 100467.1607 74211.1688 166820.3082 305987.0148 81220.4646 48523.026 75545.9287 73026.3404 114775.1944 66724.2581 77954443 amie Organic Remediation Aromatics Other aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 651618.1708 36667.8598 360256.6399 1002021.7555 313296.1084 124872.0185 158579.1674 101246.0489 93212.8005 204622.7137 302948.2498 139100.3212 2294818.7993 166285.6624 319837.1978 271815.7667 159719.1402 159719.1402 117263.1461 178735.3121 101326.6212 188853.4279 194928.0115 301785.2058 122064.9797 115874.7651 126195.4238 56542.2826 349004.0788 166404.502 344426.1258 46409.6015 125359.463 120260.7948 59356.7825 304095.6881 373941622 nifh Nitrogen Nitrogen fixation NA Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 8087.3049 16131.2762 7525.6764 18726.5356 5341.3451 3298.2476 5008.1523 19119.3514 4997.9479 13360.8273 12238.8307 221259.7421 5038.0855 6646.4031 7083.9128 7083.9128 9779.2661 6770.6958 6002.8976 4852.6028 3700.3691 6101.6554 7090.721 10572.5078 50119.1228 9553.3618 11339.7857 6571.3861 6651.3526 6460.7764 11390.578 10622.7951 305857390 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 11159.4548 11522.9114 4119.08 12126.7732 7800.4809 6335.5213 21820.0415 12216.0199 187198.4759 7729.85 19108.0839 5863.1061 4751.4627 4751.4627 7351.5866 10791.724 24098.3264 29201.1181 6350.92 8955.6186 11238.1893 17527.7712 16163.5796 16281.0605 13188.6204 42142.5041 9763.8253 9756.1828 12759.2212 10779.3361 7832.2655 5774.3554 207744735 endoglucanase Carbon Cycling Carbon degradation Cellulose Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9613.63 9006.3037 9768.6822 4425.9721 5644.9229 20252.2232 7018.5925 6250.5439 10408.359 14447.0776 125590.2875 7203.325 209108.6727 7988.2876 11413.8453 11413.8453 2898.1518 37401.526 10328.9051 101128.125 38071.3345 163581.1647 9493.8431 8609.5205 22423.5244 16843.7717 24055.852 7515.2488 12001.444 4674.7325 7745.8984 8111.2392 11953.6031 7302.7165 306532907 amyA Carbon Cycling Carbon degradation Starch Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 21064.4428 11209.6883 16721.2589 21906.3262 12311.205 101869.5663 12320.8038 44127.4561 122225.9813 17516.4701 303920.8351 17660.0778 18809.4917 25573.9669 25566.2893 25566.2893 13522.2202 25754.8469 24288.4379 122251.4655 44177.3683 17802.5504 60050.2636 13941.5259 17613.0082 50423.0772 48042.4683 24558.3693 25437.6728 27550.2103 16839.8763 25037.9245 13064.3464 37232.0291 330971429 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. aceris str. M302273 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7755.051 4701.5727 4131.3458 4469.6289 1977.6571 3981.7529 34919.6579 19704.8199 107447.4559 7446.6489 6842.7036 13313.0913 3882.5336 3882.5336 4704.3586 15286.8076 6387.6092 6158.1713 7723.4818 5274.4809 8563.0026 7192.2473 6933.6093 23535.8973 14438.2563 5966.4024 12160.0719 3326.9739 4510.507 5191.9358 3848.3115 14735.1257 220962102 linb Organic Remediation Pesticides related compound NA Ancylobacter aquaticus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Ancylobacter; 5221.835 8394.8506 6102.0668 4339.4545 2785.3004 72112.4601 6584.2269 4129.7798 2907.0244 2907.0244 3919.6668 13424.2438 6527.8783 4773.0763 5213.3551 2844.7371 16229.8154 9831.8637 10143.4845 12785.0933 8735.2316 9888.071 5096.2351 6092.389 4769.9932 4963.3543 290956856 catechol Organic Remediation Aromatics Other aromatics Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 53381.0666 9661.0187 8013.5859 22116.5328 8405.8806 8422.1226 105366.8096 3250.7587 17826.0453 10957.8035 26049.4833 172577.4418 6487.0648 12638.7511 25996.1905 13262.4287 13262.4287 10504.2476 29441.3197 8867.0956 9447.4581 26878.8329 14537.3407 11660.976 12585.0414 25113.9224 19239.6863 43982.6247 33102.3847 22232.3601 8736.1588 15252.2387 10879.5291 36116.2272 28532.1461 77378645 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16184.3976 11603.1581 18051.0029 78235.3679 13067.5392 8939.2261 16208.0643 4165.1933 11938.3905 12897.071 8282.6306 225045.1074 21455.919 12670.0228 22912.5556 7869.5399 7869.5399 7910.8632 26036.5536 27271.992 11845.0736 15078.4618 18153.2324 9847.1901 10846.5902 15120.2993 43430.1238 31151.4366 39032.5553 21719.7116 52324.157 10674.1226 11629.7823 5971.0936 17326.9469 334341887 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 10665.7639 9611.1944 15583.9511 4540.3276 9072.21 3086.3771 11846.1211 6053.426 13192.3553 83191.8827 8201.9911 12345.2899 27040.0001 17361.129 17361.129 6598.1359 18917.8767 11119.4755 14263.3945 12232.8473 5293.6371 6471.6027 9479.2097 62183.6113 10621.2186 18868.602 20932.111 23981.6037 9854.7163 16209.1061 23916.2417 21114.1096 11427.8566 115384838 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 105133.793 14349.8287 66443.6016 24112.6984 44280.1562 92515.5698 92573.468 85321.5969 45863.9956 164044.7758 140385.9789 67568.34 750761.4452 69192.9946 71876.3437 108441.1665 148645.0271 148645.0271 52304.4997 99425.9505 53147.1255 171029.4154 82609.0543 465525.307 47553.9239 41352.5305 66617.0377 97299.0089 180195.0695 83363.6677 71708.0336 41776.9977 105344.8413 62156.7663 48878.4681 87710.3561 291152477 arsc Metal Homeostasis Arsenic Detoxification Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 19075.1324 27723.6821 8968.8265 4885.2832 4416.845 7953.1853 198974.3988 17403.8479 11499.6382 18121.1185 195975.9491 25150.2578 8531.9816 6540.6335 20194.6478 20194.6478 4804.8838 16781.3624 6452.2245 17196.2174 6843.2017 12449.3906 5364.489 7476.3244 5408.7414 6377.9258 13143.9402 5956.1312 15172.0649 78507.2329 14150.5327 20859.2971 3636.387 11350.9676 328812491 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 5484.8176 5481.9315 14391.5846 2805.6828 3922.6766 3101.6303 70535.9894 4670.3545 11021.5212 5084.3455 5084.3455 3883.0015 6451.3015 5424.753 4095.7586 2723.3311 3331.659 2783.4602 4790.9211 3486.3853 288960472 xyll Organic Remediation Aromatics Aromatic carboxylic acid Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 19375.8077 6663.5655 8028.6565 40349.2413 13783.6669 14668.1086 123989.5874 15148.7652 15695.5876 102484.4131 15784.3627 486411.498 20098.5279 15758.0932 24024.8026 17939.3461 17939.3461 21475.3747 31730.3095 19495.3994 11361.5144 19475.7217 28607.5808 12812.125 14399.1058 28185.4419 54294.555 40747.324 20729.2119 26649.0619 12076.3632 33955.6557 25079.8608 13644.9387 31777.3002 344224774 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 5094.5995 6609.0438 2575.5301 5919.756 311229650 cysJ Sulfur Reduction NA Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 50136.8386 24554.2822 41104.3023 85853.994 17796.535 20903.8657 127325.0891 18385.4855 118802.4422 94418.7465 69317.4895 3896666.379 45025.4211 60391.6237 45009.8769 54689.0564 54689.0564 12163.2361 92844.6028 30409.4041 32811.5425 124732.627 35847.8611 28082.0032 43529.3077 65623.3414 33043.0807 236329.7841 66395.9259 108770.6861 24740.6341 42455.6513 54324.9552 27616.3945 39693.5928 307545825 nirb Nitrogen Assimilatory N reduction NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 35235.3463 35385.0955 8397.4002 44893.7983 6255.2516 16372.3402 18975.2993 25812.9109 11821.3743 107419.4513 21071.3689 217866.9321 14606.9747 24775.0243 21261.24 19104.0396 19104.0396 61018.1427 33941.0962 12410.5406 19429.4909 32827.5562 16170.0122 11626.6235 18433.614 83873.6927 70370.4503 48635.7339 27429.8061 38819.3995 11307.5846 22391.4526 20487.3152 13596.0619 28403.839 119716042 amyA Carbon Cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 116388.8174 20864.964 33950.2211 157264.0403 46953.0444 22439.4967 25381.8498 45311.6039 26080.1583 49457.9205 42617.9516 48124.9613 1204564.2942 47951.3165 78213.2468 70396.9006 41650.0402 41650.0402 39395.5985 50047.0041 32905.5253 91688.6204 98964.2771 42408.156 90829.1341 30132.0109 121406.7699 32710.5423 160892.9277 48712.5132 50953.1446 38810.6326 41691.5502 46712.9962 29135.9727 41900.3154 309395666 glucoamylase Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 34706.6228 27938.3243 36433.166 20010.8455 14850.3759 85407.8293 30754.6273 20050.9763 100205.3304 36926.7529 24444.4879 554126.9284 34211.3261 23703.3579 28989.211 62189.9962 62189.9962 138826.8319 52044.704 30388.4916 144424.1134 79655.5461 76513.2334 20345.6922 17865.4198 29416.0754 16306.1682 50364.3078 18473.3815 34003.872 20087.783 18827.1737 26757.1445 19516.0304 39742.4213 300545533 amyA Carbon Cycling Carbon degradation Starch Erwinia rhapontici superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 18882.0409 21557.8949 19502.7752 9736.541 13324.8237 11379.6218 6000.0678 11632.9244 14761.2528 7763.2893 350772.6983 20455.8025 11715.4767 12113.0958 6194.8147 6194.8147 11756.2129 19452.0956 16999.7018 58599.0887 20714.6722 23693.0906 8745.0884 9049.2679 16732.5098 6911.8295 35194.4883 15826.4047 20233.1362 7817.1121 10351.433 11794.0725 8064.1088 25182.3207 4883 amyA Carbon Cycling Carbon degradation Starch Debaryomyces occidentalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Schwanniomyces; 4267.2587 2859037.6641 794875.5072 5334.3404 326098.4449 116208232 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 12761.5811 8292.8173 18886.8464 14564.4573 9988.3763 6549.6276 5198.2815 9734.5612 9406.3396 3928.1589 214705.7891 10483.1688 10286.7054 7650.6622 6220.8754 6220.8754 8324.0793 17912.7959 13124.1154 12953.8238 16337.5221 20124.5677 5241.2486 5271.0944 12535.3702 6040.8057 20221.7001 4643.9295 17832.8175 7035.3111 7625.0991 8425.3257 5862.2137 22178.2674 323471433 pcpe Organic Remediation Herbicides related compound NA Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 72086.7869 26294.386 22367.7456 27740.1296 34827.5743 16087.7949 16633.8203 43225.906 18171.8451 21953.1436 37772.9128 13011.4407 492544.6651 31582.6995 186296.5655 21645.4837 17237.2411 17237.2411 18494.4916 36111.9266 54648.5877 19833.6705 109928.688 28795.4389 12463.1783 13625.7666 28585.1897 15248.5017 53086.4054 21934.1428 124536.5553 13238.4401 21676.2142 22975.7463 13366.8702 39406.0494 357199163 ppx Phosphorus Polyphosphate degradation NA Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 20523.3418 25698.1883 14038.8678 14852.416 19633.1673 16471.8886 13505.8693 24500.2258 34627.2512 35252.1804 298835.2607 27535.9055 21734.0513 18776.838 12659.8127 12659.8127 11705.1946 26464.0946 16775.2497 43096.9368 22290.0184 20471.2533 10335.3957 14955.6568 19520.7947 26407.7077 33285.4784 19830.5322 19173.6347 10707.7988 62105.9098 12885.7345 17920.4585 29921.3457 374620533 vgb Virulence Antibiotic resistance Degradation gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 15955.4434 27951.7471 8452.6347 3565.4543 24086.2166 4978.9797 16940.3711 14805.9573 130909.0766 467806.7488 18563.2582 20608.9062 37139.1165 20402.0941 20402.0941 10989.1956 36222.6035 22497.9908 24261.9756 42655.3291 11141.1248 9887.1216 25844.7718 12785.8089 14982.1285 52950.2798 11719.8735 24497.7885 5353.7444 17389.4453 17465.4278 11782.2044 20826.2634 85703685 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 19259.7061 226010.5823 18356.1472 46430.616 8485.3803 14868.3568 13115.3775 14673.513 16132.5318 9450.2051 279472.2045 14349.6578 15508.6964 16416.0609 9553.3805 9553.3805 13080.0674 36261.237 12449.858 13653.0986 20297.7182 9726.8155 9220.1684 12610.6679 20376.244 54152.8526 50465.6014 13828.0108 23067.1722 15930.1458 17793.7369 13016.0754 9532.153 43834.6331 510104 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas marginalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 18664.96 13414.84785 21626.61145 5285.6618 46485.1085 13281.80985 11975.9667 12690.14635 14271.6799 26019.25395 18078.59525 12379.79605 12805.52265 17029.15665 22831.08715 7070.9484 28275.42905 23092.26215 12896.23795 11878.6777 19398.5268 10824.39965 25193.2768 215421979 amyA Carbon Cycling Carbon degradation Starch Nostoc punctiforme superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 5372.6484 5381.1265 5085.0489 2900.7449 5283.7471 8591.4338 7468.3476 3902.7444 151535.163 9986.9948 5984.7397 4263.511 4263.511 4468.7875 8717.4334 7172.4012 11226.0901 11321.9086 4397.1506 24168.8574 4333.394 7186.2315 2916.8816 22277.0054 7870.3493 10440.6837 3445.1267 6528.6238 6118.3215 3583.2955 9928.5643 195931889 catechol Organic Remediation Aromatics Other aromatics Gordonia terrae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9409.928 8160.8497 9749.7977 4869.561 10342.1763 7142.4614 7807.3974 6118.5825 204629.7357 35427.4593 9855.9213 6308.5825 3389.429 3389.429 6327.1779 15744.4257 7586.5137 7821.6365 12430.1322 9346.3757 4697.7395 4185.8147 10575.2962 4277.2383 15165.6782 15791.5239 16820.9254 3821.42 6933.1699 15360.7464 5453.9941 8445.6673 289698330 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 54806.3381 30599.6262 61509.011 39454.1639 4361.6702 55150.4539 18819.2252 14501.0981 33518.4885 34006.4806 109032.5385 408807.8975 30071.3346 368198.9976 24550.3179 38066.8911 38066.8911 17207.5145 40169.8583 24875.9607 33146.2725 52379.2663 29838.5909 56857.9101 21208.8682 56859.3385 90765.0443 140475.9001 57495.6819 44848.6818 55749.2706 52599.2126 35342.4337 67060.5136 51700.2797 323398222 mer Metal Homeostasis Mercury Detoxification Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 4711.0817 5679.3224 2220.2291 3654.7567 4436.7041 5237.6419 90875.9541 3284.2663 7160.05 5476.7014 12735.8824 4260.4046 2546.2792 3352.9755 11617.5331 4309.4733 6100.8096 4882.7253 3160.731 5113.9447 3623.5782 6927.4532 118424461 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11883.4385 13777.5039 8547.6461 13162.4004 11045.5181 14307.6995 11637.9868 7726.8414 10600.71 13234.5146 15333.2398 247205.0892 14629.8362 14491.5427 13504.943 6497.1161 6497.1161 7735.8476 21586.8769 21625.2093 17794.7678 18309.3181 22900.203 6590.2807 10375.9744 20855.3664 9963.7633 32524.3488 19285.6632 22499.5988 12614.9967 26234.2685 12727.9995 9721.8646 26513.5529 326951030 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 322236.7124 18834.2414 118456.1676 89567.53 125804.9589 28734.5848 53274.6401 336218.9532 62776.9044 84620.8139 262427.3888 126000.748 2232239.3843 102869.7508 109571.6629 182841.8525 203159.5436 203159.5436 79057.5333 171154.0109 81146.9406 102030.096 186771.774 612340.3523 166493.0094 97721.1919 155256.0747 119016.1455 307350.3867 219054.6815 116222.2483 136435.3618 201169.4143 141694.0762 78130.3602 199940.9158 381370290 cysJ Sulfur Reduction NA Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 12213.3701 4906.9602 5695.5401 20647.5495 6075.0122 7295.389 9038.2022 6534.5633 6172.9366 12695.6232 9769.7035 169090.9097 12520.4988 10804.3627 12425.7376 5764.524 5764.524 7863.9197 16165.7928 12045.6313 9864.7965 39965.6315 19502.9734 4644.3852 7879.6679 17245.7054 3824.8333 21768.5339 12266.896 16817.4918 7787.3851 155120.7358 14284.6376 6575.1267 13181.9162 256541945 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 15280.6034 7939.132 131663.2051 4943.677 7590.1673 7199.0249 7507.4739 8251.24265 9060.5303 4716.4317 134498.9966 11030.0454 6578.2497 4796.9021 8441.411 8441.411 7609.5324 12865.50815 7799.46575 87505.2647 14718.346 15363.7143 8657.8376 6738.0827 15143.5616 5240.75725 20814.8409 26090.48345 14534.92175 5031.97905 5072.87705 9938.04015 6096.518 14863.1744 75859124 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4977.8046 3318.4998 3406.3403 5614.8187 3323.6306 78518.7425 4834.0021 4065.118 2775.375 2775.375 2786.0851 7519.3187 7404.9165 7096.1409 3980.3469 2972.7679 9027.1193 2142.3866 12515.1015 4129.3352 10088.9987 2374.0667 3740.0166 4968.6156 3474.6634 8381.5005 298291575 arsc Metal Homeostasis Arsenic Detoxification Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 63504.4942 5784.0365 5652.27 23349.937 3916.9181 24798.2532 8519.8448 11492.9598 30298.9655 21816.0325 90213.913 30309.2032 9060.6852 9646.4691 11669.7947 11669.7947 16621.6833 25621.623 11669.4811 55197.28 11686.9396 67628.5848 11256.8451 11999.1904 15036.1645 18711.3517 52979.7216 23121.4272 28166.8606 14130.8789 103570.2658 76645.5819 8104.0837 58394.6165 220933229 soxY Sulfur Sulfur Oxidation NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 4457.3555 8251.2196 12456.901 5332.3136 4344.9527 5534.2675 95574.3894 4443.6427 4448.1834 5247.6968 4966.5039 4966.5039 4399.0269 19648.0319 6712.3839 6540.8914 4016.189 14850.819 10431.0642 9806.3955 10909.4724 2435.0772 4335.3304 5943.5192 2424.6164 5428.8637 163802442 ppx Phosphorus Polyphosphate degradation NA Vibrio campbellii AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8032.4312 5265.6695 6389.627 4449.2462 15036.2831 4775.2187 12856.1182 16439.4264 12005.9083 145798.3203 9359.085 22324.3656 7521.2562 5523.8533 5523.8533 7156.5356 15995.462 13387.2008 28269.967 9993.7321 14053.5102 10439.123 6500.3786 15213.1833 5216.2675 19843.6544 13722.3071 14213.9066 5604.0371 9283.8304 10795.331 5859.1621 10032.6198 326198777 xylg Organic Remediation Aromatics Aromatic carboxylic acid Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 12618.7641 4782.9121 5613.6421 16806.2635 6067.9948 9200.7374 4792.7182 5601.7131 243090.2626 9869.2929 90964.3717 5745.8577 12781.5104 10165.3401 6862.891 6862.891 5854.3808 13192.9051 40589.5179 10324.3071 12605.7491 12839.6311 7651.677 5916.8164 9145.6798 4319.407 18854.4179 11218.487 14066.0079 5325.9283 6974.5956 8903.5619 7156.1787 17795.1699 110835044 mer Metal Homeostasis Mercury Detoxification Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 23805.1849 5078.7291 39554.601 21722.7023 40448.3037 4844.0718 6866.3944 4398.9373 6477.751 7262.6484 6350.1394 133345.0736 8267.4365 7063.8041 8145.9643 4774.3195 4774.3195 3272.0105 15307.2415 9831.4845 34112.3728 21555.5283 6073.1769 3585.4442 4536.4606 11700.4205 23467.5263 35919.2306 14329.254 11149.5705 7433.9437 21856.954 35030.3757 25369.7048 51323.7133 256397205 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 191450.7084 2165.3262 3761.1501 4411.53 4954.3945 3896.4778 2947.5857 2947.5857 3939.2477 3783.3881 2128.7614 46562.8568 4576.4027 6631.8897 4017.7768 4699.6035 3031.6592 4962.2926 388432429 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 22712.8996 6619.5619 30568.8342 10956.827 15231.1122 22742.0815 36444.7611 93821.9269 16108.7231 25126.5077 44346.5298 430616.1041 28080.8921 26924.1949 22861.7437 15910.7839 15910.7839 15036.2655 28424.3352 17950.4737 16794.1062 21019.6603 36641.3825 9521.3938 11113.84 18309.0315 28047.0031 51527.4506 25178.3237 45548.384 12522.188 13103.6147 16715.7101 12129.1388 14601.5906 346979949 nitrilase Organic Remediation Aromatics Other aromatics Verticillium dahliae VdLs.17 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium dahliae; 5816.3498 2499.8297 7618.0016 9196.1986 83022.287 5511.7842 299202.1549 2639.2776 2639.2776 6798.9778 4057.1954 9667.4193 6242.0134 3018.1362 7812.6083 14148.8193 6119.805 5902.3809 4060.0743 4865.1009 7513.5002 9789.5521 222880089 ppx Phosphorus Polyphosphate degradation NA Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 27139.1659 32940.5683 16824.3739 10604.11 23187.4064 4249.1973 33636.3489 21878.7411 4392.9819 24693.3611 20467.2117 38742.2596 209491.8972 19702.6472 14489.4224 10333.895 100030.5875 100030.5875 10018.1365 32296.456 15749.8927 24506.183 38619.4479 22298.8134 9077.1009 20918.6441 53804.333 9508.3955 36529.4703 22521.4662 31191.0815 8686.6017 12495.2552 19332.3932 26161.663 21279.3051 321165281 cellobiase Carbon Cycling Carbon degradation Cellulose Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 51816.174 27179.6089 158659.0113 33777.5815 73888.4254 20523.7892 82515.4912 79760.7291 50639.9205 56846.5524 46179.5212 37130.5401 1199318.403 42928.8351 45400.4683 302933.7423 46032.8842 46032.8842 34229.8145 68628.7418 36189.5283 158207.2438 76041.422 142795.144 31458.5744 23056.5877 54122.3754 30773.3432 77072.4141 38137.2426 52733.2427 28050.758 31276.4408 31471.5778 63370.922 87743.6447 302542383 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 21891.602 15202.8248 11473.8939 52606.6221 31417.2823 5503.9788 5272.6456 5968.6367 7621.6187 14477.6175 7106.864 122134.2775 10991.4034 15379.4816 11165.6218 6270.3296 6270.3296 10921.4629 47099.1768 24002.4719 4673.7311 31986.0436 17668.1512 3975.6678 6439.6841 31817.8904 5047.353 25967.8846 14816.014 32562.8306 10439.0115 13929.5196 21835.2775 3839.7296 16500.9463 70930916 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7300.51 8601.9496 12097.3831 13735.7178 6220.3371 6677.4867 3339.2139 8227.3024 8898.045 4172.625 250891.4087 9927.7308 10988.6266 25745.805 11885.8245 11885.8245 5337.6261 15144.8302 10917.258 8845.2597 10502.0285 9825.7055 5156.421 4427.0193 12186.2618 4393.8657 21092.0058 10110.76 11486.4719 4743.9487 7385.4928 5775.231 5029.4086 12624.141 198248869 TIM Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 88446.3565 214042.2316 26790.5812 19442.1885 17315.236 13278.7814 27173.4978 30547.1114 32544.6843 26107.679 40014.5622 104888.3447 921099.0172 48780.829 61586.3098 238815.9231 32532.9288 32532.9288 23331.904 685597.9142 23645.1607 351962.774 308317.6568 33379.0354 36046.6182 74220.0225 34577.8263 29498.5996 74888.0753 34086.5675 50530.4336 23883.5848 41911.7833 42709.617 46364.5286 46035.499 341614028 B_lactamase_A Virulence Antibiotic resistance Degradation Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 30569.5702 14539.3958 8177.6741 7801.6587 11953.0802 7664.6047 6800.1825 24493.9021 9992.7823 14303.318 6466.9316 176119.9256 6587.011 9745.8134 19356.7476 18166.3737 18166.3737 5212.6931 13856.3756 21874.9185 11260.5651 10761.4969 8396.8094 6104.3862 8744.1374 27913.784 6124.1433 18470.119 23298.312 18337.2359 13204.2857 8797.4349 6067.7585 5431.3692 11937.3066 313837820 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL037PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 13674.459 12942.7428 10599.7647 10415.1475 16373.6474 11333.8296 129658.0932 10273.5845 28058.2533 5762.8356 341065.2181 15982.2488 13254.3098 23031.682 5852.3895 5852.3895 86952.5459 18219.1477 16335.6999 14186.1395 20769.0484 16349.0561 5672.8533 6841.8027 13471.0382 7154.2688 30386.6844 13201.7568 16887.7321 8425.8076 11688.3625 12336.4838 6816.8828 24512.0075 66045891 nfsa_2 Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 13833.291 5626.4407 2835.5637 4263.6226 7273.599 9187.3331 18085.1495 18085.1495 6617.0382 7583.9159 6970.0399 5701.1268 12487.1036 7780.2879 14085.8982 9261.5113 13278.6368 7127.5913 2917.2325 8561.2711 8966.6759 5225.5725 6434744 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9892.7827 32188.7412 7378.7993 6048.6638 13918.2989 4292.7008 190217.4048 15695.0332 8861.0787 16531.4378 11597.6451 11597.6451 2939.1709 9256.5815 11725.141 106939.8167 6256.4229 2850.2169 4607.726 11340.7586 5956.1827 15181.6273 16753.1455 14650.345 4017.3752 8873.692 4778.8816 2939.0355 14678.0097 56677341 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 70012.7356 6220.1997 42924.3624 27472.4279 41908.9398 6680.3824 119656.5948 13012.3044 32848.3287 33258.5656 24275.0418 586219.1535 160879.3922 28696.8855 50877.542 51348.8825 51348.8825 47494.0685 96962.551 40388.101 117308.4192 31127.3061 18620.6407 41568.4001 18966.0702 52501.8241 34998.2245 29801.1261 30317.1626 44453.9831 13138.6243 14743.4447 23132.4262 11565.7534 50321.0574 83647475 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 4948.0065 45053.3769 30988.5686 4676.5487 14719.861 30219.2855 4921.0239 13053.0445 119340.654 7334.132 12474.6624 10837.2521 9362.5811 9362.5811 4317.0981 12784.5348 10397.0708 4939.515 5115.2323 8556.0146 3268.3412 10667.4849 13868.3914 4804.0628 19999.2298 12613.8996 17676.6765 3845.9071 7079.3308 9183.9952 4166.7208 85694315 ppx Phosphorus Polyphosphate degradation NA Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 74360.4076 11174.3466 7089.5348 23905.3955 38759.3747 5042.1071 34576.8664 6901.2027 14302.3424 17683.9432 5956.0455 418187.1057 7582.9465 10499.4173 18109.152 8339.5392 8339.5392 5394.5699 38365.6961 12622.7521 16027.5521 8294.2548 10204.669 6443.5195 8151.0313 26934.61 9068.7379 31580.5602 19686.6217 14446.4464 7205.9394 9809.5189 48992.1874 13885.681 6842.6708 395493701 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. PAMC 26617 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7049.6409 22116.7925 18404.2047 4580.039 3072.5235 2921.2991 6430.4565 6532.2433 5197.2756 64569.6578 6065.306 4500.226 8595.0751 3879.1309 3879.1309 3163.6289 18348.3166 5681.1992 7455.6305 6497.3364 4035.2024 13040.0567 8954.7436 7747.3058 6625.2567 3349.6002 6870.3177 12250.3406 3185.2127 4883.5389 284447533 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 8697.8892 5419.9955 25941.14 6504.0322 4895.082 2233.135 4571.1835 9531.6259 8445.5778 125347.4612 8779.5679 5345.6686 5790.6418 7015.162 7015.162 4492.0067 14484.8842 15298.3786 7809.9191 10629.3144 17591.4443 8496.0372 28735.9702 14968.9051 18627.2041 11412.2385 12013.3769 4061.0522 10315.2022 21281.7351 3487.6225 8413.7936 379057456 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 22741.4023 8309.7433 20007.1167 15524.7369 8293.2967 12478.4103 11021.8639 6728.4374 24038.342 20030.8191 12132.9547 265440.2252 21057.9642 20166.4594 13214.7004 7537.9251 7537.9251 12744.6448 28960.1651 17332.5469 18023.5505 27376.2639 28586.4556 10798.623 11645.9023 28542.5738 10962.6793 36862.8262 20584.76 23176.6953 15330.6457 14805.5646 23360.2194 10166.3381 68649.9887 340788429 nbac Organic Remediation Aromatics Nitoaromatics Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 23982.3781 13567.2677 15283.5625 30613.4155 15122.5902 4641.7749 39784.0213 31028.1857 25588.849 15636.2905 171256.388 14267.0604 534803.4394 31261.3944 32478.5334 23866.075 26483.7067 26483.7067 17384.2874 33308.582 31930.1347 20860.6176 37505.3368 35319.4937 14684.0094 17363.6247 27480.3469 13964.3691 68181.0948 33553.468 28486.2844 57412.1619 27439.0537 34071.2598 90594.5541 322156.2206 319749884 cysI Sulfur Other NA Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 4759.1558 11456.4867 2643.0223 4388.8159 1942.8633 1942.8633 2850.2072 7664.7802 5546.5733 5663.5488 4980.7307 5858.037 3711.3777 1699.139 3888.0262 3012.9274 5086.8632 196190212 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9148.2634 16244.2017 7180.5913 9273.0056 9158.874 8204.5382 6329.7484 8949.4161 14764.8077 4172.3039 213459.6916 10647.0411 10927.7737 7622.9332 5677.0376 5677.0376 6191.7615 15947.7322 12557.2965 10643.1924 14125.2571 12695.6405 5653.4512 5245.9394 13925.1865 6640.2439 26719.0893 12056.4041 14530.097 6722.3025 6359.9255 7720.4804 6495.5472 16805.3107 63003135 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 46475.88395 1997.4486 5414.4674 2855.3812 3650.5338 7687.24835 8551.6146 371304.0474 7327.89055 4380.7416 5800.4533 24051.589 24051.589 4632.39345 13315.7229 11952.78485 20874.38115 14395.59135 24807.0178 14786.4704 11501.8449 5823.643 4840.41755 11310.9937 11696.8887 12283.288 5412.37625 6229.59 10870.0159 4581.8457 311107505 tehb Metal Homeostasis Tellurium Detoxification Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 12412.1406 9707.2076 11189.2228 8221.6357 26252.5893 20001.6839 5810.3105 8127.7578 11517.5561 12368.311 311736.1908 13841.4646 23877.0169 24633.1063 16266.996 16266.996 10483.5174 19879.3792 17410.887 48266.3348 35604.9482 17150.0461 53004.2816 14623.4884 17240.1994 13081.4056 31088.4295 24921.3298 19342.2351 10799.4262 16021.9642 13535.9258 12131.8594 23514.4269 336430036 ara Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5998.4196 4496.8381 3588.1256 17337.4693 3899.1504 7254.1744 4260.3342 4789.0167 4789.0167 2941.8315 6055.2542 5163.0772 21262.9781 4742.8206 2522.3305 3060.4725 7488.5173 2123.3213 8928.6632 5156.5724 2093.8563 5430.9462 4828.9691 2414.4781 5203.3453 385763560 dsrB Sulfur sulfite reduction NA uncultured bacterium ws101A12 superkingdom:Bacteria; 32828.4679 16372.323 17276.418 12598.7225 4857.4662 36004.827 17880.4634 8166.2085 24658.3226 28288.857 15743.6681 454568.3287 25689.2683 25094.3 19162.1389 10392.7776 10392.7776 13494.0703 29395.1771 24064.5089 24927.9191 30700.6757 21019.3086 12167.9751 16846.3245 20329.7787 17249.2112 41156.6244 28352.9551 22993.6147 10222.1753 14566.3276 19238.8881 10291.7088 37016.3224 26985956 soxY Sulfur Sulfur Oxidation NA bacterium HY-86/2 superkingdom:Bacteria; 41871.3115 195791.6581 98569.5861 11568.5131 11090.0675 16165.6184 29124.515 12390.946 22062.7007 34314.9351 25938.5216 470135.2711 29165.133 31271.4299 15993.5153 19147.2757 19147.2757 22386.192 51788.2683 33726.611 29519.4146 54055.6279 56185.5777 17142.7147 44976.7793 40557.1219 22590.8046 82090.8555 24289.593 35876.8518 33048.859 28758.3666 52579.7572 22911.4797 41859.7514 350275103 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 5733.9639 59088.4009 10164.447 7918.8454 17527.8684 1644.6163 8079.4003 5277.7227 5238.3101 10387.5287 79487.7141 6678.9443 6968.2598 9253.932 5868.4968 5868.4968 3340.6565 4558.4914 3175.8557 4979.1605 13047.0664 2703.6705 8155.3356 9391.2323 14642.5119 3303.3949 3559.0187 3486.8006 23914.2218 330403868 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 8658.7102 7967.3121 5057.8228 7023.2808 4887.1038 4985.1138 11489.161 16421.4425 6330.2992 287458.8396 10953.6586 10386.8462 6409.0794 5068.1349 5068.1349 7817.1361 19733.9924 11465.1232 11838.2284 14369.6216 13373.5009 5045.7289 9324.0274 17121.2296 5528.6902 19770.7332 14086.736 16468.5158 5757.5336 8408.1169 9128.043 6313.9713 19765.0444 218679272 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 3862.0718 2756.7842 6540.3178 2972.5358 77522.4522 3555.0585 3770.8736 2081.3202 2081.3202 4726.1666 8440.1958 4879.4494 4089.9905 8673.839 5339.9007 6374.3252 1775.7963 2666.0001 3218.1609 2939.9323 4979.4958 197359206 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 24593.0191 354737.8451 8676.0753 30215.1817 8914.9177 12799.5758 29495.7026 23182.2092 23649.71 35050.3856 22353.1692 415740.7123 47158.4386 25285.1614 30969.9952 21171.8487 21171.8487 25647.9372 35746.2197 22639.2579 22241.2283 25947.1531 23478.9114 28078.2455 13395.4092 34899.9353 14576.4385 77349.6643 59370.1987 31322.1034 15453.2183 25062.6443 25433.0429 19572.9083 35876.2285 407804547 xylg Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 18148.1743 2157.8462 3397.8885 2802.7869 65591.8505 4036.0862 8041.7119 3308.0621 5142.621 2027.7058 4875.0462 1967.0357 2422.6512 209401916 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 54964.3144 13770.9686 25901.3577 36845.1348 73448.7855 32360.8529 51932.4437 82159.3109 44661.8078 43456.3317 53625.0045 53536.8751 1019443.5771 43277.3226 66078.6553 50398.9792 42834.4816 42834.4816 22701.1885 54202.5561 35652.8781 32651.949 150416.2679 38594.9024 21786.2 28728.4096 93701.4148 32313.5329 87778.8187 41445.8794 54201.5591 27308.5728 32800.7215 25622.2726 46816.5354 691035.0474 330971447 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. aceris str. M302273 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 12093.2095 5399.9418 4141.3437 5478.141 2159.1588 6387.3933 8939.1916 46149.4972 126873.9432 48228.2191 9672.9336 4640.4083 9870.6015 9870.6015 5239.3285 13370.1206 10055.4627 6953.7121 26518.4669 7717.9669 7874.9352 5861.1397 11595.6362 6353.8238 19746.4236 11539.941 14430.1317 6127.7681 7898.4533 7969.5241 4756.5289 33679.2257 218551244 chrr Metal Homeostasis Chromium Detoxification Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 69405.9756 47222.1728 5324.7542 2708.3449 3773.6018 2534.5118 3758.4183 2840.9059 92691.4875 22549.406 9045.0096 10091.0672 5521.6481 5521.6481 3494.7763 8480.9018 5067.4993 7470.5503 4522.8782 3978.7807 10088.7854 10028.113 6896.9284 7629.7625 2833.4015 4978.8878 5410.9533 2400.5604 304342956 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 10385.221 5347.6443 3319.5149 4811.7766 2779.7606 7223.5502 10314.6898 434316.5283 99574.1476 8008.8653 10985.5905 6579.7489 3252.3789 3252.3789 3877.5283 16302.4839 5527.2659 8146.4554 6922.9363 5382.1042 4482.5068 4530.6409 7183.4424 7689.0034 18832.4732 7760.661 12235.0746 2551.9899 5098.5935 6499.5113 3455.3464 9318.1478 145246158 amyA Carbon Cycling Carbon degradation Starch Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 33403.9168 27600.6063 388538.2636 25789.2776 10464.5771 16501.1896 9375.5845 26067.3704 17894.0478 25946.2633 367462.5933 22349.6757 32399.2527 22218.5108 14065.4264 14065.4264 25483.2339 33209.2515 16470.5281 87588.0405 26901.642 24328.6395 11850.6146 13939.6156 21367.9115 13099.6441 54133.4534 20958.5667 29957.6567 16873.6008 15598.8641 17244.6677 10373.5105 22002.3027 111150342 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 58144.1358 20197.7744 40793.7111 40968.9995 190143.0529 14368.5429 28172.5409 43515.957 42239.9965 31168.1918 47149.8764 33657.664 888517.6132 41929.2317 103020.1811 37119.7352 67629.7882 67629.7882 30860.1429 49247.3196 29624.4254 58207.9044 215259.9971 62408.808 44004.0871 69142.1677 75223.024 138714.5864 85003.3319 60032.4704 65009.1781 23149.2646 42898.921 42549.5215 43426.8138 193280.7486 323144703 amyA Carbon Cycling Carbon degradation Starch Succinatimonas hippei YIT 12066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae;genus:Succinatimonas;species:Succinatimonas hippei; 5001.8555 6044.9989 5184.6368 3880.5622 4449.1874 3338.1094 71578.5987 9232.6746 8356.047 3783.7171 3783.7171 3005.3315 5797.6988 6923.2352 5225.9713 4500.9233 11425.3216 2513.1095 8439.6914 7401.1981 2166.3612 10876.3819 4757.983 8703.6414 2907.0391 3656.0897 31581.829 2406.8118 6454.0186 297203180 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 13641.9035 5097.7036 8258.6658 3720.9412 6155.2637 5032.4829 7099.3367 10375.5301 5016.5946 122812.4625 10321.4962 10375.8314 10088.0513 2830.3447 2830.3447 12479.7016 14688.153 12820.0588 9824.9947 16886.4389 9834.2572 8276.5117 10194.8904 13153.9628 5740.5946 18956.9368 12200.0384 17403.2063 4582.1796 8133.3871 9097.7673 7034.6842 11334.5285 380681835 tktA Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 4053.8066 4243.2358 10191.4137 2771.5117 4158.6298 5053.2473 6092.1901 7523.2096 70863.5545 3315.5945 7058.0529 2152.4488 2152.4488 4506.5619 7890.173 5019.0296 7565.4103 4213.322 2266.3112 2887.157 15497.5899 2552.083 10683.8833 6772.8284 6748.7955 2525.235 3951.6263 4278.6692 3151.6227 7001.704 71002354 bph Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 4597.9935 74235.0491 6987.4499 4715.0875 4259.0206 5772.6203 4717.421 2726.3458 2342.7426 6015.0153 2342.2281 8426.6338 5461.0487 6789.3558 2163.2205 2493.0288 4329.8476 3988.8597 7415.3655 302420831 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 12470.749 6662.404 10363.1331 9671.9117 4097.3111 4478.4321 13484.2217 3952.9314 5612.939 4512.3327 5317.6804 4843.0897 4843.0897 5774.086 4304.8504 111454.162 6303.0901 7284.5642 2975.562 3666.7965 7370.8206 2701.0091 8681.1824 6554.4687 7691.6233 3881.0526 3333.6432 4562.1489 2913.1376 268309752 catechol_b Organic Remediation Aromatics Other aromatics Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 17477.9542 6565.4673 7949.6047 16339.4493 10046.4275 6107.6426 9965.5142 2493.39 10213.3686 16380.4209 6797.4166 176996.774 10139.7549 11097.3806 7244.99 26814.9778 26814.9778 14786.5916 15993.2714 11375.3106 42993.9257 14975.7495 12143.4519 5112.8759 4572.4846 10455.6039 5371.2967 20354.2407 11809.6886 16080.9052 8415.4134 7413.1804 10130.4606 6315.1543 12920.4738 237879075 cysJ Sulfur Reduction NA Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 48089.6629 15048.8819 19822.6463 81436.7187 18722.3916 12465.7404 18276.8701 52356.3624 16893.2473 41245.9729 29821.2446 512338.7509 21828.4612 58631.476 37689.8598 42008.4043 42008.4043 14836.0159 26106.6228 30917.7007 64959.5503 28975.4959 24606.9681 11041.8881 28395.7175 85070.8673 52145.5336 48210.2512 46612.1874 42663.3179 15861.5219 115263.771 56270.0229 6776.7924 34292.2348 374296467 nifh Nitrogen Nitrogen fixation NA Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 17500.59 13660.2253 6478.1498 4690.6271 6297.4063 3464.2364 4431.1336 10072.1811 5441.9092 173169.4637 17602.9011 7338.3599 5061.8866 4461.4851 4461.4851 4927.2268 12112.1758 18585.8538 143872.6452 9130.4783 5427.4823 25551.8241 5801.5418 7874.0549 6420.7956 23603.9473 7866.4792 12503.8422 15519.4354 9727.83 8826.7011 5755.9897 13721.9558 83972350 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6365.4169 10240.1293 9130.4982 3474.3263 2777.8732 5227.1182 5833.06 2290.1039 98668.4935 5780.6469 5393.8285 3733.8942 3589.506 3589.506 4840.8973 7789.5384 6781.0772 8294.2634 5745.191 7883.5023 2812.1632 3151.6912 11170.7329 3452.6829 10283.2397 8605.1571 9633.2902 4559.3073 4124.7646 4538.2527 4317.3032 9297.3531 124110763 badh Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7956.5311 2184.007 22169.8138 4593.1968 6068.2412 6341.7331 8745.0188 8745.0188 3861.9154 7121.773 2118.1986 5014.4488 2815.0511 11073.5516 4938.8403 5657.0322 8155.6817 2785.4928 2128.5895 158304086 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 6156.0967 4107.1239 13918.177 4059.3056 2912.0925 4525.6889 5007.5945 5257.6325 139757.6424 5871.4158 4016.9062 4571.3494 2339.8608 2339.8608 3304.6258 8883.1384 5061.1414 8124.4769 6990.656 3957.0859 2867.5145 4762.0322 10194.4213 4898.2754 12940.1128 65305.9193 3948.2243 4454.3872 4027.4777 5206.8837 9409.4528 120405367 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 10359.0792 13930.8366 6372.1823 11794.8864 6378.6576 9815.3132 74886.724 4260.344 10395.3529 22941.8294 8212.3732 155515.5196 16528.0082 14104.6833 9032.6125 5885.6906 5885.6906 9283.011 18884.3761 12563.9098 10306.8938 12707.3355 17586.3024 14514.9632 7707.1574 15375.8463 7957.8948 25692.73 43150.7271 16230.8505 6425.4111 8323.3787 10690.8791 6097.2925 12338.9478 71915762 cellobiase Carbon Cycling Carbon degradation Cellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 57531.9032 13926.281 433426.992 55834.5299 88251.2347 26097.3432 57684.841 43158.2364 42783.7128 56230.5986 73945.8498 82544.2748 1058383.9572 322892.8835 168857.1385 91585.5148 78145.2515 78145.2515 42454.3484 175513.3475 40057.1015 67315.113 59081.1611 128310.3226 35178.6783 42382.1804 65794.7102 49157.6268 136309.7317 67407.0714 58313.28 40611.7483 79317.9775 40171.9307 37157.4945 106918.2362 30725044 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces thermoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 11676.4226 12108.8891 6403.5767 5751.2699 6647.219 5840.0628 9351.7161 9498.4336 6690.4855 291274.1518 10082.5214 16589.0202 4159.0511 3922.9914 3922.9914 9220.6811 14557.1332 10324.4376 11546.78 13022.1026 21771.823 6258.6495 6325.4664 10840.601 3508.5346 18217.166 4179.4688 11574.6673 5547.9062 9489.3999 11809.8646 5286.5585 13374.007 190685905 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 171784.6163 28850.0415 190393.4835 79574.7285 382381.4644 55007.4547 42868.7509 72165.1537 82970.2664 88855.6875 215159.3006 131677.0715 2302594.6107 92318.1296 106831.8025 201511.3239 158689.2559 158689.2559 283839.4552 214768.3028 148657.1836 68738.7231 255535.9536 107185.3042 66065.5767 179754.806 116787.2652 144787.328 205060.6322 167606.4078 192238.6704 48350.9396 112481.7492 205951.368 136287.3426 167763.1187 296263189 terc Metal Homeostasis Tellurium Detoxification Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 210564.4077 56211.1269 188528.9776 104076.4537 130253.6044 2021619.6859 349638.5238 448850.2115 77538.776 67306.3164 84188.0476 370694.0413 2083248.4838 88686.4255 86441.0338 113530.0216 109339.1189 109339.1189 58117.747 179829.8388 81072.4936 226563.1988 118434.7717 153395.5721 45562.4895 68116.7036 517796.9821 138781.8669 238042.0315 118169.617 182480.8327 163719.2607 69871.474 109224.0219 70546.1293 141521.0528 378747712 aps_apra Sulfur adenylylsulfate reductase NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 24070.5241 12354.7052 5653.5474 9519.5791 15455.6741 4219.8595 12679.0587 13611.0515 10832.3271 217972.3709 13697.7683 17317.8621 16155.4069 7554.8691 7554.8691 14364.797 27236.85 14439.9616 10006.721 37458.9401 14389.9957 9747.0332 9668.399 16041.0357 11094.1273 25084.2554 37842.8576 16741.6537 8366.5966 10289.2878 19406.0378 7975.7719 18004.6671 302681819 glucoamylase Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 34116.8584 4189889.8826 1216269.8773 5271.1763 2691.1214 2586.904 2398.1682 17113.5328 765937.9214 407983376 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium hassiacum DSM 44199 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 14666.9504 7177.5111 8209.8714 5248.5728 6081.1886 5688.5063 7775.7569 17101.2223 184424.7874 10565.5094 322878.8637 14863.527 7123.4088 7123.4088 7868.1225 14039.1875 10265.6912 14716.0491 15853.2654 11086.6369 9368.2583 6316.6971 9171.8312 8020.2292 26022.8943 15321.6526 13465.9162 73726.626 8619.5302 13028.5324 5962.9748 10748.6409 196221773 amyA Carbon Cycling Carbon degradation Starch Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 44403.7323 126540.0537 15938.6819 28789.0484 9634.7358 35098.9619 20099.6354 39023.3138 38251.4004 43783.6311 31685.1122 608260.4506 65982.354 98955.5231 40111.5751 33240.0711 33240.0711 22638.8691 62257.166 22921.0685 50596.9025 80544.1369 71342.9322 47004.3597 28435.1479 38842.0419 41236.5118 62393.0322 32378.6803 36064.085 43788.3942 31147.3834 61044.5066 24803.1167 47845.7398 342829356 gdh Nitrogen Ammonification NA Streptococcus mitis bv. 2 str. SK95 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mitis; 4878.9544 9022.2136 3068.2678 10508.8991 4366.3781 2754.8835 2754.8835 4508.9142 5418.4057 3393.7373 5275.4654 9862.8322 4434.067 5363.8374 2837.2032 3797.5043 3726.1688 2836.2774 164456044 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 23279.7381 7458.7902 66935.5996 2684.6365 4046.7352 4171.5724 3722.2874 2271.4138 4906.3324 5984.9604 2136.9983 8569.8495 6564.5023 7909.5863 4704.2758 5179.7842 4685.4952 39943562 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 10495.521 68223.4625 3878.9529 6755.0084 7658.2955 12960.2167 5865.4923 12197.4146 12040.8007 210036.1149 18538.9679 13600.2882 36810.6208 21252.6409 21252.6409 4608.076 16973.3062 12623.1058 8467.7407 45730.4147 8202.194 7520.7911 7322.8475 11962.6679 7001.5494 88541.3744 28730.2675 16414.4617 6430.2246 11918.679 8087.8424 55714.5297 22077.5399 116804618 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 17336.9155 9616.829 8536.5669 9721.3251 9307.4216 14057.1986 17687.7061 9535.5891 13148.5398 66056.1667 18068.0154 254967.3757 18444.4936 44386.3898 11724.916 8811.66 8811.66 16371.312 30612.9371 16292.3365 17172.3699 23611.8863 14597.8094 11552.8679 6197.6495 30677.7717 16582.5192 69764.7106 35361.1379 20859.6143 11178.1075 12453.2311 13529.6568 9889.7357 30591.0609 399534844 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 23739.6954 16247.564 12218.6944 9848.5028 59688.4396 19924.3604 5524.2296 15794.1233 6127.9821 9368.2582 12261.3378 12849.0304 394570.8271 28132.7459 19560.6348 70290.1866 15862.338 15862.338 13179.9772 32884.9331 26080.4928 16374.6442 23137.8478 22850.0292 13505.5024 25495.5249 29242.5796 9219.241 45916.9372 28419.5587 38898.2615 9386.3026 18605.2865 17278.1081 9089.293 29756.9706 397723913 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium sp. AP49 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7374.1721 15376.6586 7022.4016 14024.6496 17055.1779 4921.9457 3147.5023 6440.7767 5981.1497 6885.8241 118411.4509 90768.0668 4432.3831 9567.3588 8627.4327 8627.4327 3410.9331 24114.9272 10941.5333 8901.505 23912.2911 5606.2855 3753.4408 47063.2116 11042.881 5802.0938 27919.3861 10828.4267 10297.1709 7502.9196 14285.2702 16023.4512 384032.2135 8833.7458 83404778 nirs Nitrogen Denitrification NA uncultured organism 17113.0168 4213867.6394 1292295.2867 2547.02 10026.2162 14966.0716 3978.7328 2647.8529 2647.8529 3823.5984 10177.1172 5124.5942 8351.5546 7032.6361 11387.222 7436.1563 3236.6787 15767.6713 7445.2645 2620.5831 8538.04 379466.8433 332039933 ppx Phosphorus Polyphosphate degradation NA Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 8640.851 25605.3122 18873.937 6861.4989 15499.6891 3946.8578 12384.5741 7837.2437 5799.5374 6882.0618 10275.1804 369645.5977 12351.1883 19727.9851 62014.1206 41731.0015 41731.0015 5925.1495 15460.4996 5885.6171 4313.9768 9702.0599 9129.7961 5261.2683 7116.5494 15766.3317 4138.7029 11605.4761 26438.1235 14568.7349 4876.9917 11037.1913 9458.3739 4549.2924 8346.0235 333892018 amyA Carbon Cycling Carbon degradation Starch Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 5263.0488 4807.734 2541.1415 2934.3674 4623.1718 5075.2965 2864.6024 127561.4266 7654.3341 5071.7974 5371.629 2955.9101 2955.9101 4272.1343 11660.2422 8053.789 5699.7443 11143.2951 12075.6863 3170.6617 4134.6757 15180.72 2849.7985 12451.7129 7984.8072 9949.0458 3230.8888 5000.9806 4409.5184 4416.8975 12278.6564 300545579 amyA Carbon Cycling Carbon degradation Starch Pimelobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 6957.579 6941.3139 3081.3329 2837.6261 4439.5998 1882.7485 1882.7485 8930.777 16211.1436 121604803 poba Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 8188.1266 5386.9872 8319.4962 32469.1261 6706.2355 5422.4428 5959.4411 6619.1786 7959.0816 10716.6593 6797.054 142205.3853 8893.4951 7494.8558 8946.9586 7454.5692 7454.5692 6497.0345 16201.8989 7893.5909 11440.5662 8327.3317 38968.4457 7739.5557 8688.6244 12446.6167 4614.645 18394.8298 10095.3034 13781.1856 4361.2347 8671.221 8897.7142 5385.3259 11534.456 89899097 vana Carbon Cycling Carbon degradation Vanillin/Lignin Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 4955.4681 5440.9859 10686.5562 2935.1495 7394.7356 2413.9608 5086.1911 4795.9051 2552.6706 114494.9039 6857.6014 8002.9134 2147.6369 2147.6369 4632.4474 13507.4094 6626.3719 11515.1913 6014.9886 7129.0758 3439.3886 5141.3267 22996.6664 3818.6349 12032.4795 7179.1209 11540.929 4392.9526 6218.2576 5947.8386 3653.8752 6603.4421 253574458 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 7551.2518 11016.4256 5698.1733 14397.4751 16887.2539 6554.302 9091.8865 5813.6082 2817.9968 7057.8565 11261.2136 16570.3866 250513.6215 23726.4893 7025.0813 7457.0917 12719.38 12719.38 6413.6133 12131.0256 7374.4685 14323.0046 14954.2927 9953.1845 5675.9965 4875.2518 12175.3518 5034.3298 16722.8774 4956.1336 10600.3156 6084.2549 8258.4605 7188.9197 6134.3515 12362.2901 62512311 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 35920.7384 14611.528 40728.3694 49583.5733 32212.108 12324.5232 69529.1973 38261.271 22807.7543 21060.5528 21067.7232 414831.0246 52013.6696 28714.6996 41418.9459 20926.6929 20926.6929 18193.6685 54853.4189 25027.398 22946.7937 35819.9552 29028.7648 22224.8644 20955.9266 32666.7703 36467.0556 83662.7401 29822.1393 45134.3227 15108.9236 32768.9041 31730.8768 18103.5616 45757.337 197712146 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 17908.7884 1251986.065 281055.8447 17759.4571 4310.2916 28353.5343 6647.7072 5365.9165 4823.9475 11311.041 6506.5839 105245.359 7389.5186 10965.6417 8206.0065 8353.449 8353.449 5721.4016 14714.3784 8610.4687 12047.721 23333.6285 10625.1058 12777.6938 7226.6557 13477.7417 4067.6513 21426.3552 6898.0704 10683.2131 16622.5076 5861.8837 8093.3351 4423.4321 20145.7891 182678432 TIM Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 14305.9174 23579.2539 37822.3821 20719.4449 23177.9489 13995.5512 524598.4513 10629.6424 7327.7292 16029.1155 13156.8457 441797.3097 38873.6489 17690.6963 21522.5924 14991.3958 14991.3958 29766.7714 34416.3397 32623.0643 21278.6857 118293.9931 17622.9873 7225.1327 19633.7799 50353.5834 68378.8239 49040.5756 43214.4272 46029.4771 26427.0708 17397.8172 23933.4651 88286.4332 30157.5329 227875465 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 4158.6058 1844.0417 3523.1421 2513.4942 2513.4942 4702.1866 372277742 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea sp. SL1_M5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 6115.5818 10020.0686 4868.9398 3918.1182 3918.1182 2794.5576 4160468 terc Metal Homeostasis Tellurium Detoxification Bacillus megaterium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 14149.4572 5574.1586 8047.161 6131.7163 11786.4694 9526.6409 3425.8603 8649.4811 4277.4228 156641.858 3555.9191 13020.3895 12213.4007 6033.1056 6033.1056 4298.2103 11597.8334 11636.7933 15026.5407 12946.9196 29996.3955 6410.6325 14267.6746 12220.587 16307.5277 26019.162 22186.8775 13811.2155 7557.5327 4532.033 6332.4565 3801.8694 8247.1073 336119729 terc Metal Homeostasis Tellurium Detoxification Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 60953.981 12877.6184 38264.4636 48991.3615 48828.5303 23477.1561 44140.6189 107006.2343 29401.736 38470.3108 178119.9471 30809.0214 1367329.3724 71108.4315 49645.6503 52056.6031 38694.7594 38694.7594 48940.4449 95620.3301 43462.9264 30985.2613 55664.5905 68385.8468 24919.0138 23435.1821 55748.1982 137236.9443 81060.0336 35075.5889 57501.5589 27737.9353 34019.2991 41457.0051 33409.0598 72980.1639 310818140 cellobiase Carbon Cycling Carbon degradation Cellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 6650.8515 6150.5944 9077.7957 5035.5605 4515.8121 3146.0777 6507.4371 7397.7383 4951.6003 203478.8517 7704.5532 5924.6852 4280.4839 4915.9081 4915.9081 5001.6477 12950.7354 7992.4936 14525.006 11177.7166 9931.6469 5313.1302 4665.3816 8184.8291 3413.8696 15465.1555 6573.2856 12725.7965 3610.2274 6555.637 7305.0009 5059.5745 7574.617 77378679 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22391.998 11962.1009 21502.2457 29518.0603 14151.6499 6860.8144 26740.796 17046.3054 10622.1298 18167.6969 29161.6607 12147.9818 545827.0814 19147.2518 19355.7867 20307.9743 10977.6322 10977.6322 14944.4353 57419.007 18103.6539 26439.7646 31387.9989 28748.4505 23826.6325 12464.122 25135.8587 6477.0625 36260.4596 31355.1867 25398.5159 11945.6604 16642.8968 23879.8493 24560.2907 33743.206 284447578 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 12678.8239 2530.7294 9708.6022 2650.1855 9713.8935 6705.7494 24148.112 135233.256 5105.858 5830.4077 8278.445 7099.1759 7099.1759 4187.9968 8144.3475 71754.3311 5288.3075 7572.1305 7962.7518 3171.7517 2868.4791 10155.2715 8192.552 3797.6463 3218.0538 4129.9192 4679.9254 254386883 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5956.0362 68334.9546 6844.5194 20117.3892 6108.1455 7783.197 2894.1629 4176.9322 5819.3075 6708.5807 4978.3132 141089.6099 6061.8842 20102.6704 9911.1101 6045.6267 6045.6267 4293.1369 11504.7883 7774.3175 6297.1693 8354.9204 12067.0477 4202.0394 11253.1191 11956.3045 4071.7671 15054.4353 5977.0619 11515.9458 4625.3285 6744.2127 14322.9895 4426.2633 6704.8578 319790380 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 10048.8891 19460.2249 5185.8142 22209.6928 9551.582 3222.121 7602.4718 3058.7213 6592.4469 4710.8443 4221.3211 254144.3116 4247.5498 30624.455 19026.6659 10147.6136 10147.6136 3096.9436 13074.1158 4271.9558 4614.2568 72614.2816 34632.0784 3613.5824 5843.9757 18191.2775 3866.5437 44981.9418 27451.8393 8821.2967 3935.283 13107.1595 12784.5496 9659.3693 9211.4673 110597530 sqr Sulfur Sulfide Oxidation NA Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 5486.2854 11594.4784 3206.8448 3232.7273 2630.1444 8198.7713 5019.3314 3163.5854 73566.6005 7179.1244 9352.4824 5889.6312 2973.1595 2973.1595 3622.4236 10398.4149 6760.3147 23551.7809 7982.0982 9800.2621 4086.681 5166.7591 8240.6002 2752.2686 12371.4479 3527.3766 14361.0006 2049.3952 7723.0184 5932.6386 2835.2697 8921.0221 343790375 cmua Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. AT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5450.7548 2755.3299 21544.7951 3578.8073 4629.5917 3086.7984 235395.5888 4429.9944 9102.9813 9102.9813 3308.9226 6661.0878 4599.914 7395.6703 8661.1369 5117.0427 3148.9728 6911.3936 3691.1049 11191.4386 7683.2729 3334.1221 3458.9766 3119.6947 84313475 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6770.6871 9494.2669 8394.2602 5798.1848 3501.3484 5254.3418 5532.7989 4848.3894 654806.6043 6023.3626 6875.2458 10175.7782 6838.3361 6838.3361 4167.4385 9420.43 7173.0624 6665.8278 7063.0599 3669.8047 3690.3495 16548.2288 3741.1472 13318.7228 7802.0531 10038.7696 3322.1362 5289.7172 4999.3378 4544.8261 12135.786 168199245 SoxA Sulfur Sulfur Oxidation NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 49815.2596 45086.4032 19704.3333 95713.1795 23198.8451 14448.7176 31124.0795 38085.4664 18001.4491 24342.9091 24572.5526 345940.3509 35653.7061 43059.2784 22010.2215 122079.8267 122079.8267 36311.2079 35778.6713 20153.7395 224628.5351 42372.6091 43577.1707 58361.9986 41524.1798 39554.7773 21411.43 170398.5378 26291.1735 42364.8487 29653.462 19792.6115 29586.7454 13324.7731 49132.2881 89899022 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 124983.5536 29204.018 18593.695 41847.9605 35640.4583 13982.7598 16227.0244 5705.1138 8099.7873 6539.0552 794664.3754 9055.9549 10189.9009 20207.5795 23209.592 23209.592 5900.6836 35325.7298 11909.8982 9331.0192 5776.9742 6773.537 3702.874 9437.197 24832.7198 7745.4948 32830.3204 30146.32 20612.0785 8100.1555 7939.6113 7397.575 6941.7065 8787.1009 56478449 ben_bcla virulence NA NA Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 13327.7923 5578.0806 17250.2809 12058.2185 13165.8456 7234.1631 20058.4195 8812.9363 8732.8558 10913.7695 7207.8225 617184.6466 23855.2809 32953.4287 103764.8088 54603.1678 54603.1678 7207.4194 10184.5619 9032.5726 137674.5136 15161.5477 11401.1352 4923.3704 9818.6667 25890.0239 6031.2968 16187.1359 18192.0603 27716.8952 7935.8797 10130.2352 10097.3803 14282.6579 8189.43 237745643 pgk Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 773444.2578 3539.9058 3541.4977 3500.0256 2695.0921 18969.2661 118424304 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8456.4611 4849.6367 13891.6417 26135.3857 7329.4806 2171.6047 2249.2683 3647.7351 5050.8544 4322.9273 76432.5811 6591.0997 3901.7853 3948.9031 3948.9031 4943.5483 10513.4615 11653.2652 7650.4175 10410.9626 24978.2039 4554.9364 3599.9325 10712.3938 4564.726 19056.0165 6321.4459 8961.8387 4889.0005 11922.2209 5136.6983 9492.4643 10541.1923 226309429 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 8140.6023 5638.5442 12627.5556 22632.2397 8424.2324 6065.3385 4102.484 7054.8662 34026.5004 12325.0673 127264.8117 25745.1773 15208.5049 13264.3036 4702.6723 4702.6723 6008.6656 13178.7078 12450.6231 9983.1229 17328.1978 10502.8955 7252.8933 13140.6801 13317.7894 19200.5767 23151.213 9399.09 15397.5905 16324.5278 10185.0508 10936.0296 5735.8618 10411.9246 70672913 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 32700.7751 2976.7218 2866.5986 2213.064 3135.1453 103782.2309 11443.7428 2551.3354 2551.3354 10833.0595 4794.5367 4242.2948 6595.5122 20601.3273 5309.1628 2446.4026 47813.588 29652474 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29725.3762 17762.338 54118.5563 18334.9275 54879.7397 37934.4126 11925.1081 29735.1048 16564.2284 20520.2344 38088.983 27176.2921 436722.3144 27674.4034 31183.7654 29851.7768 32930.8759 32930.8759 19043.606 64136.8722 25708.5509 30272.5311 131360.3656 454575.7176 22580.8308 30263.5577 31227.8637 18202.5819 73933.9602 22370.515 33483.6085 16978.1032 37445.4204 44560.8818 26714.8236 53326.2613 385677024 poba Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 9866.4146 19254.2267 9302.4144 52012.9579 11127.321 3024.6457 40406.1267 3471.5124 4750.5186 16881.9396 4100.8605 193346.8494 14171.7319 9985.7841 18805.6058 9301.6211 9301.6211 3434.584 15170.6737 22663.8122 7016.2916 9503.6041 10735.1246 10867.1135 9692.7753 16497.1993 5478.0256 31759.2727 12004.2168 11690.523 5314.9846 6173.6551 7026.7568 7659.7907 5937.2868 312879074 chitinase Carbon Cycling Carbon degradation Chitin Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 4239.7199 6691.0058 1856.0338 3464.6383 5688.6571 3394.3241 3394.3241 3434.4287 7910.1068 4081.7809 2596.6748 11924.5078 2476.9315 8691.2038 3853.8961 5472.4579 2883.0197 2568.6013 12685.3782 4256.5943 86280536 ppx Phosphorus Polyphosphate degradation NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 5302.0492 5577.4236 2844.5179 2474.8605 3973.5188 4332.4449 4108.3112 54463.564 4920.4833 3685.151 1966.5713 1966.5713 5445.014 3664.7711 4786.7883 4732.1113 2271.0108 2375.8737 6879.327 8162.4109 5658.2594 2218.4875 2795.3607 2411.6139 8521.4575 323384357 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5044.016 55467.2149 4690.5865 3396.2156 5192.7709 3603.4247 4188.7359 4963.668 5998.4561 3835.4767 5612.3418 2745.3694 3154.0319 5233.3279 4128.5547 2843.3783 217986854 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 474102.9571 22395.7116 36478.9611 61620.9309 114125.9377 24057.1804 43515.9958 556338.0119 26183.08 52850.7223 73676.4879 53078.321 1568084.0235 92196.0756 71884.6197 86413.1314 70621.2912 70621.2912 444294.3244 174473.0353 47167.5593 158241.2074 74700.7476 124557.539 51649.6632 41204.8244 67180.3625 33501.7734 100680.0717 39740.082 67675.7632 23211.2524 145814.2559 53728.9988 376273.1231 80461.3531 556331 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylophilus; 5274.6188 7447.7894 17947.4239 5532.4818 9183.997 4959.6661 3795.4977 16267.6499 9012.522 6368.1232 216950.4724 19419.8132 11704.2709 14890.3551 6381.9249 6381.9249 4596.8717 17966.0685 8586.6634 5004.6547 11637.7171 11925.2494 3231.2878 5503.6107 12918.3222 3007.6763 13782.0098 6531.3913 12265.8422 3976.5327 6084.6628 9433.6914 3554.3875 8011.9725 116043890 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 136210.6831 23467.9819 26023.2924 10808.9688 87567.4319 16657.9389 12249.3891 38276.518 55434.4321 26580.1724 372210.8513 27907.9521 79317.6154 86408.3196 45821.8625 45821.8625 24238.1681 49295.8741 18214.2654 33840.1293 65198.09 13600.4293 20888.22 24322.2414 27449.9923 27291.1395 96289.8325 41138.3773 68906.8395 21262.6902 26226.5518 25381.1286 56091.0872 153081.061 390616129 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 9651.8771 7227.6431 2872.4277 7646.8204 3365.1239 8312.6462 5838.1432 3377.9218 3377.9218 3690.6748 9663.5081 6640.3444 9707.1589 9299.1501 24448.503 4960.7417 2997.4156 11698.5046 2719.8751 16394.4482 6375.329 12655.8596 2642.1632 6560.1801 4152.3718 3817.0853 5894.3731 397733546 linc Organic Remediation Pesticides related compound NA Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12262.8664 11773.0685 30958.5016 7856.9004 9235.8203 16332.2761 6437.7971 8428.2303 12443.6953 95187.8887 7722.9379 7393.2031 51452.9682 8735.5913 8735.5913 6192.6985 13456.1296 5832.9553 8884.6305 5875.4681 3875.2428 10627.6289 95778.2811 7143.3484 30018.913 9480.6208 13833.9721 14778.6467 10325.8582 15657.0832 57880.1288 13005.2982 259454476 exaa(moxf) Organic Remediation Chlorinated solvents NA Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 17039.9554 15528.695 21481.0234 10833.1187 17656.643 10137.2393 7538.3728 14230.1908 18579.4525 6809.2376 364976.0629 19079.1518 18453.1703 10747.4505 9941.5303 9941.5303 10927.7451 24703.0129 22008.9988 20234.8764 33038.8076 26952.4666 9100.7878 9889.1042 22263.0621 8992.31 38755.1084 20555.0169 24855.0017 9346.711 13411.6169 13881.5036 9802.0619 30271.1537 284046191 bphF1 Organic Remediation Aromatics Polycyclic aromatics Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 8062.0365 31584.9666 5718.8551 7642.783 3657.3747 147997.3111 8655.2148 3699.0884 3951.6778 3951.6778 3346.1822 16345.2732 5292.7572 5799.783 59661.7429 3882.3535 6122.8901 8924.3013 7664.8689 11610.6654 7534.0013 7917.1503 5716.6666 6069.4499 6177.1149 4316.7147 4939.4656 164455762 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10802.1233 9918.057 35703.8618 4674.7353 3870.5207 3067.4006 8932.9851 6831.8013 76173.1185 8817.3039 12385.2885 8878.5866 7610.8109 7610.8109 4107.8586 17624.9372 12919.9778 6141.5377 13451.4211 5054.1808 4136.8661 53253.126 13190.5069 29965.0112 22171.9602 12754.9458 22767.7145 10589.8306 27349.0033 5178.6901 6571.2625 5421.877 77379125 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 179253.2017 16676.3488 274258.0068 33174.0779 20687.7515 739713.3458 45430.9435 38922.0575 20155.8317 52047.959 85906.1834 89810.1997 858669.3441 87361.203 40634.3848 49297.4077 60600.7311 60600.7311 33299.438 64972.0813 41563.3766 67427.4911 79775.6405 89792.5651 35913.1372 37558.8264 53209.1932 39825.5815 30309.1381 35576.384 86458.4489 31899.0905 44810.7793 53697.1526 50287.6385 65683.8331 133910864 amyA Carbon Cycling Carbon degradation Starch Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 314702.3461 20240.2438 627484.8151 43729.9977 494598.751 51556.4487 244292.6154 130030.0791 189318.1933 151582.5674 219658.0178 157037.9413 3448516.1574 287257.5461 253454.0051 380573.1732 299050.3364 299050.3364 101397.0657 395450.2564 131243.3631 496188.1188 328863.5962 238368.9091 102799.5295 126898.2767 263598.4521 142565.36 354942.3015 194386.6742 219928.1617 92142.4334 133920.7163 428806.9633 118966.1152 524659.8381 365893161 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 26949.4307 12889.4918 6516.614 16661.3177 25329.0199 3792.8524 12156.3184 30801.3937 12600.832 45680.4897 18169.8479 3083681.5861 17513.4527 16511.7231 24908.8232 10582.7241 10582.7241 12805.002 32321.402 46837.3761 59974.8285 25994.2998 22048.3935 11663.0423 19766.9228 16530.6386 36640.4206 77298.5511 19306.1496 20678.94 8016.8247 39813.687 48561.1323 12433.2601 48414.3092 336399333 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 302267.4923 3428.9407 2807.7604 7622.1291 8881.2308 5481.7908 139706.2746 7457.2259 6646.4406 5402.5596 2338.2312 2338.2312 4377.9227 37195.9613 12933.8498 4372.0289 11264.8594 7158.2382 3425.4165 5053.6556 7710.4991 2771.0245 24747.258 9044.858 13819.3041 11671.1381 16353.4609 6780.705 3249.5259 8554.3072 422314083 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5482.597 5242.7873 3740.8636 3233.9201 9182.0121 5304.0085 4664.5922 73280.1193 3588.8584 10513.4934 6582.5353 3333.231 3333.231 6076.587 5097.814 5178.8514 3961.9167 3012.939 3399.1831 6597.2152 3415.4879 8690.8426 8001.8088 3973.2882 4341.1575 39011.3492 2546.9758 4464.0123 326387268 urec Nitrogen Ammonification NA Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 13023.2442 15705.9054 7173.2311 10033.537 10400.8022 9488.802 15296.4992 7937.9276 6486.5667 12253.759 9600.573 8330.8877 175238.8448 22641.9065 11627.1868 21440.2999 5171.5685 5171.5685 9313.1976 24863.8196 18923.5557 15033.3547 68954.3442 13639.3137 8861.3689 8601.1197 21170.8331 20677.3214 31765.0862 15664.6984 18129.7993 9154.1009 10673.9071 19142.296 9134.7934 19014.3554 2808782 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9070.922 18766.9694 4486.7238 5745.9601 2273.8429 5803.4655 7899.8488 4398.7211 129147.6308 5890.673 44223.5381 4473.6331 10324.0733 10324.0733 4589.2446 15968.3421 7150.8681 11368.6347 9226.6078 7573.5332 14571.028 16996.304 18565.6248 7911.8364 14725.8102 4305.4908 17833.4703 4319.1111 5883.5263 7710.7214 4971.5678 16399.9676 262081082 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 121514.6169 31536.9874 296987.4341 26980.6728 29981.6948 24766.6618 88303.3014 170900.5754 64897.9543 46872.225 112748.2758 112142.6897 2813801.8381 82944.1753 146365.9377 250885.264 129841.0244 129841.0244 47333.5838 171253.9978 54507.564 281707.8269 147209.578 208020.6833 79757.2033 84236.6736 108536.2632 93878.216 201641.2394 142686.9437 134110.4953 93535.8626 99516.2954 127631.8866 85624.6196 142262.6888 197782340 terc Metal Homeostasis Tellurium Detoxification Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 19494.9112 88196.8265 20101.0549 10724.6692 7232.3699 18114.5876 16205.3221 6433.1998 16621.8026 40389.2 27704.4303 391302.4184 17364.0657 19037.1896 29010.6497 33487.631 33487.631 14817.8943 51377.2464 55189.3514 56247.9304 53904.9067 13188.9443 11371.5636 41674.7262 26081.7973 20220.1739 90839.5559 34497.9577 24675.895 16621.3023 33534.0228 18014.3649 24181.5713 60865.9605 152029691 alginase Carbon Cycling Carbon degradation Alginate Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 291268.4523 23155.684 38288.6638 1482932.5507 94628.9032 14198.2087 59588.4419 532555.2082 128581.9069 55254.6323 50471.8446 51355.3391 1403913.6852 43707.0721 74802.1625 272906.8983 75627.0765 75627.0765 24243.0987 45396.8982 30383.7707 100980.0431 70063.3989 72337.4675 154570.2006 72188.1271 989555.7809 234986.3474 93031.2766 366768.1955 125063.3905 29330.3824 58852.2098 40824.7967 368558.6681 179323.9627 289471234 dsrB Sulfur sulfite reduction NA uncultured prokaryote 6811.7016 4353.8695 4532.8702 4140.6106 5990.6487 74016.1808 6797.2404 6012.0395 5603.9088 2208.0696 2208.0696 3179.4217 9403.8532 10228.3393 13987.0647 10628.9554 7126.2373 3233.4486 4078.2432 14053.788 2833.8791 23198.8928 8031.3553 12062.6429 4004.8384 33463.1475 4560.7938 3443.4559 7605.1737 259165757 vana Carbon Cycling Carbon degradation Vanillin/Lignin Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 5017.8339 11614.0632 16312.5509 6162.1934 3550.8763 3455.3166 2063.6014 69686.5211 6094.7401 2668.3645 109022.7035 5151.071 4389.6877 2306.9415 2306.9415 3074.9704 13813.5294 4836.9331 6391.3194 5514.0701 9795.4191 2965.9317 2939.0789 7571.6763 2509.3827 5845.3502 6226.7887 1884.0278 3554.5776 3746.9784 2332.6944 5734.4796 150014852 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 6015.7255 2684.9058 2956.9458 5260.3459 6314.0729 92128.4831 3698.3737 8459.2729 4323.622 10328.2128 5426.0597 4952.1601 5800.3606 6740.2772 3378.759 2971.7285 8660.2809 3044.3769 10339.6588 5808.3502 7385.3801 3534.6512 4336.4591 4434.0341 3383.3683 7996.604 52346968 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis DSM 13 = ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8611.0218 3337.3252 2732.3592 4840.3181 1417142.1049 3793.4627 3662.3907 71154.1193 22962.5997 22962.5997 3401.6268 9784.9826 6853.2448 3003.9921 10342.4676 11844.4087 4339.8898 3092.7851 32365.2726 75993821 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 50372.8566 13438.2071 41201.8129 16782.9429 14759.6214 16329.4991 14884.6777 26137.9849 15455.3308 16649.9153 24040.6524 331327.8626 20761.8497 37315.511 36828.7899 23573.143 23573.143 18589.0648 46141.3325 28459.0387 18725.4752 63080.7514 18583.3636 15145.011 18858.6449 25916.7572 20498.958 76222.9496 23893.0613 34650.0689 19645.3037 20691.8821 20095.5202 31353.9835 93252.3254 302556649 pcpb Organic Remediation Herbicides related compound NA Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 14000.2855 146419.0823 5692.5847 2439.6231 4811.4804 88943.5796 9081.2111 3902.4704 3089.6021 6082.8481 3377.2225 4392.6448 46459.0681 4713.6939 7621.5945 3827.7547 5521.7016 9842.4049 5267.562 5588.8622 2676.9739 3118.082 8333.2818 336297576 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5829.0266 6406.6812 3729.4773 2376.6049 4591.3522 5373.9596 2782.8906 103036.436 5104.9969 4483.5674 10779.5725 10779.5725 10751.2283 15477.962 8652.1619 7646.1152 11714.286 5116.8464 5419.5062 7876.4913 9113.9105 11824.9753 4331.6385 6262.7686 2649.5577 5195.3325 11626.5503 4870.203 11444.9646 299744469 nagg Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 13399.2762 5990.3624 11712.3952 19893.4644 15053.0415 31522.9073 3678.1521 2706.1455 2459.4392 5037.0466 4418.9027 17512.5407 167784120 bphF1 Organic Remediation Aromatics Polycyclic aromatics Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4768.0956 75513.791 10859.7678 2184.8274 2697.7618 5391.2056 10438.1337 5473.9999 71194.4639 4170.9414 12522.6896 5025.7216 3887.1143 3887.1143 7321.2205 30325.055 3995.5706 5448.8958 4202.1854 5837.2348 2452.1458 19693.8781 8750.8469 8400.3453 3284.4298 4668.1747 3039.2189 2755.0435 118424487 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13763.6056 8737.5367 86311.3712 60228.423 15266.8918 20363.1647 17700.4876 13895.5947 24107.8739 7958.1137 478532.8133 12230.7056 17645.0352 13222.0351 13092.7962 13092.7962 13580.4676 69167.4574 65511.5394 44688.9425 21300.4602 23316.6302 10013.89 14097.9535 17520.3019 11030.0951 54821.3757 139486.7916 18385.3027 13070.4796 15306.3514 10968.5641 10749.8278 25226.899 94314465 vana Carbon Cycling Carbon degradation Vanillin/Lignin Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8780.6899 6081.8481 9357.4966 4218.4414 5165.2627 3850.4812 8260.2099 8527.6927 5256.9225 174968.8667 9562.9163 12073.4691 7585.9419 11520.6551 11520.6551 4755.0576 16596.1231 8847.0923 11417.0968 15031.486 15116.5424 5651.0932 5562.2915 10298.2171 6979.1861 18247.5353 13948.5448 11361.1918 3808.2353 5762.0755 7264.6722 8271.9607 15589.8743 145570245 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 88874.8163 11620.9432 19704.245 34636.7423 63668.5124 21260.4208 58964.2475 40862.6302 38965.7333 39988.9426 47206.2957 34979.2162 895515.9987 75025.598 61950.6087 41312.3769 26577.3675 26577.3675 28220.4908 73491.2593 33065.4977 24806.5632 39746.6129 39486.7445 20238.8989 25843.634 73970.4433 22589.8657 110572.9036 38647.6313 53214.3561 21745.6223 32769.729 32916.598 30428.7661 48432.8364 164455806 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 69872.6153 30855.1005 70024.3526 19608.0301 5777.8459 36345.9363 56914.0688 26987.9276 74949.5316 44335.9438 93175.5015 1605402.7182 51537.411 51683.5072 52588.2819 29935.701 29935.701 29787.5709 75532.2093 34155.6124 58223.7806 113913.1218 74693.2837 39365.4424 31921.8463 45134.652 41842.4506 82916.547 30689.1201 120170.092 19591.2427 69487.3929 45307.9155 24549.3043 164413.7249 328840478 vana Carbon Cycling Carbon degradation Vanillin/Lignin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 21386.4188 9591.6438 8961.4849 7365.9119 81293.611 276589.4938 36764.406 11773.1618 13950.8564 6447.5967 880132.6765 8549.3993 7970.9073 6689.7169 4753.7021 4753.7021 11322.7264 20781.3697 11693.9528 13950.0788 16227.4843 56918.6714 6872.4161 9784.433 13343.9173 6198.5053 32678.6974 10299.7668 19116.6873 7422.5293 9730.6409 9616.3306 7726.0754 20761.3067 259476380 amyA Carbon Cycling Carbon degradation Starch Listeria monocytogenes serotype 4b str. F2365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 10857.9926 12872.4488 3696.3438 2559.84 6565.0577 7283.8148 118193.7345 8436.7569 7326.5193 5534.511 9102.2801 5254.8047 17218.9993 9053.0761 8911.8752 3658.4342 3935.6167 9894.8677 4079.1365 14943.4614 7786.649 9282.4096 3981.2407 4249.4494 4547.9707 6359.8309 8153.2296 30138582 hao Nitrogen Nitrification NA Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 10934.9114 4948.6677 4753.811 4023.7101 10145.5473 2675.514 4834.2801 8884.6594 2918.5687 99724.3186 7397.3127 5607.0339 17330.1429 4235.0462 4235.0462 6011.8826 13625.5271 9648.4219 8317.0292 8411.3826 19336.8395 3085.111 3891.6126 9703.4137 4047.0523 14488.1941 6092.1546 10215.52 4683.5893 5361.3 6373.9317 46185.3471 10254.0713 71383830 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7344.7481 77164.6025 7534.7434 4388.9489 3801.0564 7184.4587 12090.9075 152973.1228 29359.9867 6172.4629 3865.2481 3865.2481 3539.6773 14464.1012 5905.0134 6127.2768 5059.3232 4798.5135 11905.9152 5954.2314 13257.3851 57682.5615 12728.7501 3691.7821 4265.9099 5432.6205 3056.7924 12434.8213 164507720 amyA Carbon Cycling Carbon degradation Starch Streptomyces glaucescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7658.9539 13310.4679 8787.1241 2371.8978 16591.1294 3756.1452 5309.5818 3186.7849 3186.7849 15757.0925 4247.4039 7725.8913 7530.9266 2495.7262 9041.5128 5853.5254 19288.8151 16699.8813 11889.9673 11093.3229 18418.6013 3896.102 4424.2912 59893466 nosz Nitrogen Denitrification NA uncultured forest soil bacterium superkingdom:Bacteria; 10699.3274 4546.2672 31682.5305 5634.946 5638.4112 8306.2481 2844.0598 11468.0179 9338.9065 11429.3301 121941.9192 11126.8013 13598.0639 12011.2439 5409.5404 5409.5404 7690.4721 184595.3182 11081.141 54457.876 107019.2933 9035.4825 8744.4362 3829.7399 25258.9407 5854.7644 27579.8557 14523.6396 12511.4861 3527.0819 8269.2223 23255.1517 6199.6502 21666.7629 162568551 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 83332.6336 36071.2886 8731.6902 146636.0529 21303.5265 9210.7621 26925.5501 13787.6006 40353.5691 26163.4061 31987.405 55453.2988 462676.9799 22360.2754 33179.8483 29577.6829 126070.5879 126070.5879 9795.0256 39659.7955 38255.6507 25352.2795 94927.4799 19208.4419 16519.5172 40080.2888 21993.3861 20407.4452 73119.2971 29156.1735 36562.2703 12950.4303 30669.6373 32529.9341 37096.1681 18628.3599 62003551 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7391.6016 3982.0614 19525.5579 7375.1796 2548.0353 4836.7099 10137.5653 5926.5824 50915.2341 13830.53 4248.4989 4491.0714 4491.0714 4284.4035 7074.3158 6955.7944 3960.9816 8088.8488 4451.3467 6792.7301 3807.1657 8846.0331 5866.5085 6849.1313 8230.7091 3764.5405 6373.781 4777.8438 4574.9384 5707.1075 45386185 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 31298.8926 16436.0957 17400.3482 17354.4874 5515.3683 15207.0144 23926.9311 11768.6914 15767.0275 23146.2914 9440.8138 397268.701 23150.1598 22105.2472 11649.39 14826.0603 14826.0603 13333.2225 25304.5776 33358.2795 45810.7817 33014.0783 34000.8226 97844.2692 13535.4028 29938.272 109963.7033 38271.952 18472.5789 25619.6086 66632.4092 11217.7511 17643.0053 11783.1223 41878.609 37548730 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 27343.1026 8113.2947 5663.5674 16138.4805 6011.8261 7531.7749 7694.4356 6053.1025 12028.0005 289282.0052 10730.5494 34784.8661 22802.3007 10512.5943 10512.5943 7418.0012 23837.2718 8883.9011 29673.5183 27795.7921 17205.9205 4304.591 15193.3117 14103.6026 6830.7575 23577.494 30566.2197 40269.7429 5224.9302 11392.2264 6600.3707 5485.232 63146.6474 147886260 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4577.033 3432.584 5013.2939 116748908 amyA Carbon Cycling Carbon degradation Starch Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 27877.9161 8895.5028 8823.8495 18568.3494 4590.3962 45718.0173 8126.0044 8335.9544 25656.6248 18688.463 11622.3155 294543.7633 18741.9953 17368.8961 10610.8868 8089.9917 8089.9917 9503.1398 19681.2724 21496.6 15553.4146 17947.1671 13654.6157 7406.32 8534.1356 16844.0335 9366.782 34963.3816 11730.2155 23835.5759 6936.5657 13560.1886 12908.1036 6592.0019 13255.2976 336296197 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 23136.6491 24110.6228 21452.6742 11393.4097 12937.4484 11948.7255 18137.8905 8061.7244 15733.2561 30051.9062 322271.7987 17467.2006 7897.2143 11740.5381 21858.547 21858.547 13107.9111 30904.9117 13217.2704 29095.8826 181969.2676 18998.1603 10758.6104 19357.9598 29095.5492 8381.8958 11927.0892 9550.8855 14141.6701 7519.0851 12425.4271 13769.5684 11557.0288 13730.3351 392287470 amyA Carbon Cycling Carbon degradation Starch Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 17619.2227 31023.1379 10685.9307 31140.5187 18036.3963 23892.7373 12372.7232 17012.5434 128052.5688 14409.6031 83495.8662 20885.842 22875.3873 22875.3873 26678.6354 45776.032 11120.008 64554.6578 28732.5609 11400.4943 20709.076 14240.5621 13791.7015 18521.7267 37652.2714 47650.4468 69320.2269 18700.6638 16043.1028 49288.0487 66954.6631 13897.7897 87307584 linb Organic Remediation Pesticides related compound NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 6974.8905 2848.8066 2371.0966 5108.073 12428.6524 5650.1665 56473.9309 6868.5032 8664.8838 4265.8748 3720.024 3720.024 6528.1052 15872.7437 8190.1747 8727.2069 12219.1306 7409.2894 3419.0441 3481.3993 7261.1008 3728.1603 22402.7452 8628.6176 11276.6086 3860.9048 4745.3232 5140.7443 2817.809 8339.5984 386689855 ppk Phosphorus Polyphosphate synthesis NA Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 16052.0361 5833.9136 17596.0779 37413.5707 13117.9039 26580.2005 10381.6968 10750.1915 28089.4528 96644.2085 8720.6048 148493.8097 324136.2583 20483.9684 45979.3143 19679.9981 19679.9981 30482.68 34172.6248 13453.4924 4886.5711 14245.7015 13143.7162 7105.4833 10535.7958 15908.8674 10594.9837 26698.7421 30255.8522 42100.5015 9226.3234 21992.5056 11069.993 24382.0216 11598.3112 409417741 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. HYS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14563.0451 4942.2107 5600.3775 5606.1021 3160.987 7958.7116 13978.1578 14119.2314 705171.9172 9526.8172 11864.1869 4538.8488 4905.9317 4905.9317 7757.4473 15294.5248 9453.4579 6027.0053 13746.5671 12588.7442 4359.7951 5829.8347 20772.5188 5874.8396 18724.1871 5755.0405 10612.0775 4799.2847 6344.9336 10014.348 5568.3597 10603.9406 82940315 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7694.578 15887.7306 13082.5636 10453.3094 3300.529 6362.9948 7376.9318 20140.3771 11035.7929 88994.0117 7603.5965 20915.0968 32146.056 13294.4974 13294.4974 5567.7844 16247.5859 10580.5097 95242.3506 16868.3966 14917.5182 5376.5616 4945.3898 7860.6169 5361.3752 22708.518 6390.2957 10758.1414 4295.2207 4685.617 12033.4713 5994.3345 23189.878 61220987 catechol Organic Remediation Aromatics Other aromatics Ralstonia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 17894.0633 16022.5298 47590.9985 13801.2166 8375.4293 11236.0584 16830.8379 22067.2258 12539.0714 18953.534 39826.4805 18841.858 531290.0451 33478.009 46977.7929 17369.8282 26380.3924 26380.3924 11377.7127 27473.7205 20064.0987 38517.4427 23160.1516 24698.6342 12278.1286 15572.9565 20086.0972 21700.3334 62029.0583 22183.3288 58106.2804 21928.7703 15020.7139 106208.4178 12562.707 22643.8936 158142218 cysI Sulfur Other NA Sinorhizobium fredii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 23193.4751 34641.3702 52542.9559 9142.342 16957.1812 13997.5263 9729.2535 71591.7177 22879.5536 19512.374 233772.2088 21325.2724 10241.8162 59892.2159 9651.9688 9651.9688 11529.0796 40104.2351 16160.1417 33073.9024 68080.701 26332.5187 9655.5951 12120.8458 33919.1886 9795.9341 52112.5232 20476.1718 26277.3275 9647.6613 23283.3426 16082.0246 11252.263 29429.3876 374656893 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 9317.0367 5960.8486 5543.0252 24883.134 8301.3553 4057.0201 22223.0612 2938.1846 9769.5519 10255.7704 7141.5511 241063.032 8174.703 14194.1541 17752.1989 9261.9223 9261.9223 14361.1339 17223.9941 10916.544 9933.9577 9292.9475 7188.4609 5218.5524 10283.2896 21639.9159 18210.5148 35001.8763 16750.0452 16159.7413 8050.3497 7996.9262 16217.8216 5482.7292 8393.008 84494483 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 6079.505 130944.8831 7286.1809 27947.5616 23085.9479 30470.8935 8821.9587 4658.2649 11380.9765 7416.2315 13094.7737 156781.4526 13352.6126 19794.3474 18384.3137 10138.4141 10138.4141 5401.8675 12203.0726 33446.1502 18262.143 16544.6781 58691.4698 12335.2116 10965.1114 22086.0363 6962.803 31056.6077 9972.2687 16358.0307 10249.0285 9556.6411 9701.6488 6376.0349 11591.9032 343502263 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 23549.6233 4751.2585 8864.3416 7746.4456 17028.8049 11918.0475 6759.3235 15275.8129 16605.9446 22701.5731 231723.7993 17818.2671 11550.1068 12655.0632 15437.5914 15437.5914 7834.1728 32364.9456 16729.2492 33545.9675 19441.2887 28024.5199 47720.2753 16249.9993 16329.8915 28202.6019 39911.5851 19617.2268 23902.3697 11643.8022 13936.6722 19058.4125 18979.454 16191.2315 83631795 chitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 9548.4076 24986.9391 5169.7294 3166.1323 13668.2896 2491.1056 6829.7182 1944.1105 1944.1105 4942.3655 2383.8156 6824.5963 9212.7635 5524.7204 7977.7993 4383.4222 4432.6329 4361.8048 4768.8898 237808809 ppx Phosphorus Polyphosphate degradation NA Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 18857.8382 5258.4413 91622.6795 24518.3542 6041.6892 10600.0887 132989.4931 20392.3222 21514.5308 8935.0929 161165251 pcpb Organic Remediation Herbicides related compound NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 5159.1319 20864.9505 2630.0886 2951.7379 3718.979 2649.6786 5025.1227 4750.267 4209.0774 4465.7515 3043.8763 11532.3875 5323.4548 2087.7616 2491.6822 9557.0816 3240.3113 5534.876 357202941 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 7212.0914 21982.9037 229243.0404 12448.0464 3617.2017 4763.3789 5298.3061 7372.3359 3114.4987 4608.6422 10026.6332 11030.626 4094.3327 4244.6642 18429.7609 6692.8779 2874.5558 24726.9231 5582.0662 2539.0052 2835.4325 3801.8404 163743362 urec Nitrogen Ammonification NA Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 367761.3528 14378.084 583856.1002 32419.2457 153616.8794 27185.953 71979.6545 285422.0859 105667.2557 158724.1932 138756.5685 134037.1864 3157078.9745 234064.0403 224852.4936 218491.5828 121562.7397 121562.7397 88439.2851 213988.4572 90702.7536 473134.1233 245514.0199 158317.7114 96078.5995 217972.3737 109643.7119 92970.4307 293647.644 186445.1268 236198.3503 120740.8509 122141.2048 165525.2504 100521.4917 157874.8051 124488145 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 66324.8492 59936.0951 65143.0349 58671.3624 8398.5573 54892.384 57326.8223 33057.0361 23543.352 52602.0668 48741.6495 791148.3142 39167.8486 64273.2754 102832.1976 27501.7431 27501.7431 26611.6411 73210.9447 42549.7229 47950.3767 60833.3694 76707.305 76541.427 30415.1001 42386.7244 46057.9581 147277.4589 57352.3354 63445.9699 46104.0342 54269.7153 74693.4947 37192.5993 51433.4965 118424412 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4886.6424 12530.4371 6355.2978 3575.0187 4902.5099 8564.9528 2969.7965 144593.4118 8701.3383 6057.596 2534.9923 2534.9923 4219.9535 11629.6098 7594.5462 8821.8658 7449.7677 13124.1867 3079.438 4383.869 9213.5949 4963.2111 15894.6539 6359.7095 8632.231 4294.5584 4986.7836 4466.6257 5662.3211 11177.889 91690047 tphb Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 12297.3085 31503.2773 31557.4884 5283.3135 2228.6041 9869.7302 16365.724 2094564.6877 5769.9086 7880.799 9852.4941 4662.0403 4662.0403 3688.6628 15758.156 12395.0217 4961.5336 5995.0476 27212.6817 6125.8082 9974.9663 15601.8229 14753.2441 13440.2897 6980.3649 12128.334 44329.9725 11876.4579 4708.7152 6138.197 91204414 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 4334.9684 4836.2157 1950.7094 3558.2598 5298.43 3324.9311 2779.7833 8959.8736 4285.4994 4913.8438 4710.8721 8697.1952 3244.6433 5013.6906 9439.8736 5881.3906 3367.9451 5783.125 6155.8669 4858.3219 302885356 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 6457.5082 300995.9145 8701.279 4986.9941 2424.3355 2736.7531 3619.7828 24721.2691 2972.8622 305337.4369 9796.5001 8040.6024 4271.6506 3264.0475 3264.0475 4878.0525 13897.4443 6464.2407 6139.7085 7061.0928 13817.496 3312.5899 4451.1127 8437.3895 5427.0898 11822.0019 5392.5582 7839.2662 3453.4595 4643.8539 356016.0663 3669.754 7880.2663 299071804 nitrilase Organic Remediation Aromatics Other aromatics Ralstonia solanacearum CFBP2957 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 58003.8105 3197.7379 11516.349 1954.9087 6554.505 9926.4657 4222.9376 171957.5632 8381.4883 6124.5259 6289.6747 3685.5592 3685.5592 11973.003 10262.545 39986.0833 10544.0633 12834.297 9294.7056 5437.2512 10714.575 4438.5562 14116.4506 11723.3182 12355.5842 4433.444 5041.2485 7746.9005 4208.6425 16631.3249 118762773 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 11297.0744 14758.393 5928.3806 7267.1855 12889.8735 5393.8422 5407.4519 4705.676 15807.1752 24016.9931 208823.1443 27465.4266 9453.232 8223.8464 7656.9486 7656.9486 7313.8692 27987.0963 16303.8572 17587.9425 12569.6126 14229.8245 8463.0104 8104.5739 13354.7014 8131.2022 27419.9879 14681.7732 21961.1962 7907.6909 15885.7455 15909.0304 9972.7466 13459.7812 313587715 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6380.7136 4072.8247 9804.1245 1900701.6601 7869.1336 15448.1475 5772.0391 125719.8113 328958.3921 9282.3094 16166.8577 3678.4031 3678.4031 8252.1067 8222.4773 4984.6153 3560.4169 9797.2457 12553.4765 2538.0739 3064.8533 8679.0702 2703.4665 13519.9548 7436.3619 8605.2972 2110.8481 6733.2123 5654.4125 11211.1756 328939875 pula Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3797.5545 55357.3037 4612.4969 3581.4775 4556.9408 5320.2576 6143.4457 130529.5561 13399.2846 16045.4051 7150.812 13576.9361 13576.9361 6531.6553 10476.8356 3992.1546 7040.1081 4250.8534 6002.6631 13016.3957 4928.6056 36842.9513 5409.2248 5760.4238 2972.671 6348.9045 16813.6752 3657.4353 12759.8345 403704926 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium sp. Pop5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 40168.8947 11002.5306 52643.2614 34379.9777 1062604.4854 79362.6421 27821.8389 45535.7111 38855.5223 32573.5645 57008.83 27606.2098 8883915.6353 39785.1924 44936.2441 61832.7486 49671.3517 49671.3517 24111.8463 46251.2824 32989.164 15217.2358 80910.2502 34784.2699 13916.1485 42481.2237 108649.2575 27739.1149 82762.0967 152162.3359 81065.215 15941.1364 29937.3764 44400.5952 12246.8146 36077.7266 32307925 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 112886.4732 29292.1366 62121.0729 45474.1345 175171.5662 49433.823 62060.961 64497.6492 29364.8134 97279.193 92906.1343 83901.3598 2006937.2664 59997.0645 233851.2739 119360.4929 61779.2245 61779.2245 30470.1811 318490.8406 50741.4241 52368.0575 95330.2754 57285.9131 38025.3574 36268.2025 61385.5904 34097.8309 130563.0397 81920.1077 72953.2599 154196.456 57376.391 69944.4019 44411.1175 74546.5192 139002709 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5480.5799 5073.9886 11055.6852 4680.2573 10901.8985 2901.989 3797.1179 5115.5375 4377.9265 125730.971 3973.867 3637.3512 3622.2095 7580.4327 3676.2808 6884.2099 22585.7391 2360.6771 3628.593 2509.8054 6136.4757 2354.9368 4266.5253 3327.1943 3281.0198 5216.2498 154695750 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 16582.7587 9585.9884 13736.627 36259.0641 166240.7427 9485.1594 7392.3684 19022.7335 12178.5494 34612.1029 237093.352 14591.6869 21766.7959 13857.1078 18743.1155 18743.1155 6019.5832 20527.2047 12378.8063 16580.5822 17822.6089 12617.343 5088.3637 6110.5013 16515.1718 7686.7454 20559.208 8783.7571 17973.3735 9374.4401 10221.9308 25827.601 8321.7559 56963.3519 291563209 dsra Sulfur sulfite reduction NA butyrate-producing bacterium SS3/4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 3893.5956 6080.347 2594.3008 5023.8848 4511.0406 164455580 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 68821.7613 14112.3489 62168.3417 72562.7967 27781.8702 9302.5002 15846.6723 26246.2453 3902.6934 32153.6419 29630.0477 18558.9729 159440.3035 23505.1342 18960.1615 19731.1154 25449.048 25449.048 8979.0689 26869.6867 8420.59 23620.2348 392461.9461 21280.603 36516.0159 22619.156 28730.3773 13341.5291 135655.7789 25201.0456 26462.7943 10700.0446 22189.7246 44724.7063 8873.7678 85546.4051 375140555 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 15039.1809 7482.2108 17605.729 7762.3381 14766.1711 12486.0623 6468.7613 11978.4424 14413.8385 355274.5913 317187.7934 20824.715 14878.256 7994.4909 7533.4047 7533.4047 17351.547 19361.4367 15879.5552 15539.0325 21510.3632 16551.4827 8505.4583 21062.1916 14747.3932 7539.06 23596.542 9668.1219 25275.3062 5882.5976 9481.9498 11417.2192 7600.5865 23805.2864 166859879 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 14785.18 11577.0387 13168.9257 12021.6017 14797.0808 10265.6476 4235.592 15580.909 14844.3391 6817.5454 226792.4498 17128.8062 26208.0064 9060.6396 8413.6642 8413.6642 8863.3225 22152.0973 14596.2694 17764.5703 20335.412 15161.4219 5902.8593 9100.2475 16967.3471 6396.0333 25652.5741 6047.4807 16333.2065 8482.8109 13018.9181 9718.5515 9781.4703 17377.1396 32308025 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3726.4493 5996.5207 3484.5266 4047.2784 2848.8667 5587.3264 14196.6251 9199.7545 2386.6932 5664.4037 1993.068 354721331 ppx Phosphorus Polyphosphate degradation NA Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 25835.1884 12857.0374 6055.9435 18234.9651 10944.0965 12038.2167 27760.1241 15916.0969 12160.8523 27278.4149 15162.5476 16919.1324 17688.1502 25652.667 21584.9023 9785.9877 9785.9877 24865.4578 29046.5395 54330.3513 22433.4042 31667.3619 84099.2421 10144.5094 14192.5792 21164.6011 15906.2206 37423.8642 24813.279 33335.4181 15095.3326 21463.6533 13303.1797 14073.0076 23444.1003 291005844 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 22233.611 67587.1644 15693.563 13237.5517 14148.7122 24009.7027 9341.401 13761.08 9499.1816 43971.3916 50442.8937 256526.2202 5572.3138 16245.6699 10494.6856 15540.7859 15540.7859 13179.5202 20611.0266 8937.6051 16324.9816 78413.349 11107.076 33931.8019 38681.1694 13984.5072 6440.4431 69544.4482 21187.0512 38742.6854 10374.8042 99027.068 12849.7962 5451.8773 11965.1317 253689315 ppx Phosphorus Polyphosphate degradation NA Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 7597.2618 7546.9959 14093.2756 4728.0543 2898.1606 5403.5741 7552.7443 4661.5552 144670.5981 8093.9167 9500.5488 8270.1482 18216.173 18216.173 4692.4971 12841.2696 7764.0291 8514.4305 10311.5495 3458.0499 5870.0877 5752.7216 4111.8552 4789.4781 7063.7388 9750.0521 8999.1248 5179.3546 4628.3888 4323.6492 7331.5495 15625035 soxY Sulfur Sulfur Oxidation NA Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 28087.9256 9931.8186 8395.6588 11647.2979 11089.9095 8917.9644 7667.8712 161462.8217 10918.7098 7587.8093 4548.18245 4548.18245 12432.6195 21227.2634 10770.4558 36409.5204 16722.8803 14194.6909 9357.4057 4902.3739 18471.4585 29769.1055 78486.5022 48509.3701 9427.9622 12672.8446 8509.6734 17115.2341 23371.8405 77026370 pcpe Organic Remediation Herbicides related compound NA Pimelobacter simplex superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Pimelobacter; 90909.7353 24552.2019 64298.1415 38785.9264 43674.815 37911.2985 44299.2684 40857.5316 31261.2472 63618.0927 188046.2544 44458.0258 3317713.7198 79093.7614 384739.084 54061.3704 57232.083 57232.083 52624.1339 110727.6795 110629.0443 78487.6862 474594.3518 67913.9565 120414.628 49251.4876 63995.1792 129527.804 148644.4969 94917.0554 80627.1245 56152.0696 98015.8613 53490.0936 55271.5104 59579.0968 337741987 SoxB Sulfur Sulfur Oxidation NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 12423.4057 26517.471 2450.1542 3855.2012 2855.9123 4200.4793 3006.4413 4052.285 7394.1176 2851.4509 2851.4509 2899.817 5683.2974 4460.3989 3364.892 3867.7882 23859.6569 2297.3327 5850.0745 5503.8952 14044.141 4355.7752 6224.5247 2656.1468 2886.1488 3866.3193 2562.3663 6265.7396 350550062 ara Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 55302.0183 23812.6533 26583.0017 21391.1618 184646.3628 96474.5809 55564.6189 172873.5147 66137.5699 35895.3897 76979.1637 74208.2801 5868988.0301 66351.25 249177.586 68434.1793 88678.5588 88678.5588 120918.4233 175115.5575 211965.3199 148203.5607 115984.6136 103728.5766 97791.7119 100671.0456 38212.526 82745.0817 409533.5085 82186.8523 64433.3735 45275.6919 206805.074 120027.7584 60178.0164 439131.8028 83317030 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30616.5491 17558.9254 86332.2109 4573.8217 17568.9717 17691.6987 33266.7298 13409.2349 64645.4165 28916.9224 1453617.2282 25283.9955 14776.4054 12293.9877 25800.0853 25800.0853 13094.5723 93069.6563 18648.4646 40996.5632 50326.9507 51730.2959 21290.9142 16974.0228 15106.5919 28029.1406 70537.4977 22507.8295 38008.9866 22892.0151 31754.8755 32291.782 18235.2951 17602.4615 317398205 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6049.1933 2007.3279 2007.3279 2331.8476 296852057 rubisco Carbon Cycling Carbon fixation Calvin cycle Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 181854.2872 88834.5588 119550.9019 183496.7073 225067.6388 57869.4778 111925.0454 105552.8281 90432.4718 150354.1016 153738.6777 96444.5509 2037422.7803 127880.9745 213978.9876 478062.1049 122108.247 122108.247 73717.463 139184.3668 140867.1395 361330.2289 169118.9105 80227.5979 58772.0651 78825.5464 124174.4067 62263.9896 163463.2552 258974.5192 177837.5882 95060.2724 65780.9212 104286.3517 365383.3609 93936.372 425214 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 564581.8461 64081.5298 362504.2474 1353162.7382 325692.2303 184805.5054 214588.8794 223837.6318 805066.8489 195681.3345 296196.1955 245732.0406 4020918.6896 242330.5118 548954.9702 529465.5224 296153.581 296153.581 161482.6093 287559.7398 159289.2268 683602.0845 697972.4852 467438.6712 253147.3142 177612.0545 315304.9895 173030.0078 735635.2785 682956.8587 328340.6058 177520.5583 179834.3423 222883.9682 149901.8512 778965.3544 71395642 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 16854.1109 4006.2632 12521.3783 5470.9699 6478.6248 66341.2507 3501.8479 5693.3006 3373.1939 3373.1939 2767.0052 6920.1533 5786.9366 6838.5882 6238.9555 2536.3514 4647.9242 2399.767 7715.3708 3242.0251 4330.0064 4848.8509 3500.3129 5858.9284 94482876 rubisco Carbon Cycling Carbon fixation Calvin cycle Telmatospirillum siberiense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Telmatospirillum; 15869.1066 489922.1725 16847.3554 6984.9233 9655.5459 13864.8105 7472.6816 11320.9192 18726.443 21323.0085 394198.7975 20555.6624 23382.3355 16014.2191 7579.9296 7579.9296 10086.6134 27948.3445 18009.2383 437675.6736 36789.8281 32870.0209 15202.7401 10725.8281 18880.6558 13575.5259 37612.6466 36778.2302 36684.0298 13066.0088 24291.5647 12374.6161 83246.522 27840.151 295431633 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 13524.4317 22902.542 2916.502 2949.5746 1968.9108 1968.9108 8197.301 600711.0301 4830.3793 5448.8011 3246.1462 9853.7883 3348.5295 4291.038 3847.1381 375146417 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 9967.042 13940.1782 13793.674 13190.3193 13386.9007 7792.0798 18060.4169 29336.635 9776.4626 94068.0675 15440.4657 7322.65 274197.8598 18427.9002 22359.0018 11502.9428 5781.1459 5781.1459 10897.6305 15852.3334 13595.7381 40317.7979 12101.5226 12806.9052 6618.8763 7040.0816 24077.3398 23516.2546 27944.2763 28331.1709 21838.6909 11704.8771 32046.2698 9013.074 8549.1472 15847.1202 116200458 axe Carbon Cycling Carbon degradation Cellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 41733.9272 11384.0106 8534.3093 8849.7884 6347.6182 4622.6994 7099.3955 4536.6861 9581.9696 17819.655 139355.75 5957.284 21230.4602 8571.6636 64725.5852 64725.5852 6988.9129 58619.4471 7783.0166 4790.697 18203.5481 12077.7741 4470.2764 5610.2277 9634.292 4654.0303 16209.2077 6409.0893 10608.0659 4120.389 11959.7897 12434.3959 5399.1679 6135.6701 316943133 phn Organic Remediation Herbicides related compound NA Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 16302.3993 13180.5115 15058.6319 16435.9993 16960.052 14992.2663 10888.8938 10137.8478 14965.2952 20503.788 10203.1949 417481.6024 20023.6209 29647.3157 10841.4855 8074.6517 8074.6517 11155.8638 28654.8503 20376.1544 19898.6522 70234.5381 24062.1862 11844.1079 10221.3287 22967.669 12847.3064 32706.4919 20215.1307 26898.0353 9986.7288 12812.2811 16637.4737 12156.1114 30345.563 365285673 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6516.2499 5526.898 6105.3461 3905.1002 3905.1002 9493.716 6969.9316 5467.2158 5554.978 4679.0926 3219.7905 2012.7288 5157.4262 2344.3977 3489.8339 6542.7758 118434943 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 135515.7535 21441.6906 12177.2589 6007.1699 12549.2927 5562.3909 9153.1284 10902.8749 7899.8827 63384.8711 40789.1258 295867.1676 55072.6036 11048.364 15718.0359 7123.9332 7123.9332 11068.7403 97386.3142 11513.2559 60085.8625 44238.8817 32780.4229 38103.3273 69045.8632 16420.6882 9512.1083 34693.8044 18924.616 23654.7573 5825.7335 11464.7834 17035.3889 16238.5061 32736.4103 359820022 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7298.9983 7407.1035 2551.6184 10372.44 103580.5017 5054.3056 2699.018 2699.018 3647.8843 4209.7851 13366.9208 2919.5019 3732.0896 359736225 amie Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 11970.5226 11549.7146 5467.2838 15312.5992 28121.3171 7317.2464 6391.591 3122.8175 56934.0292 9703.0629 7277.0173 374878.4568 11575.124 16387.6745 11349.7494 6223.8141 6223.8141 8865.9933 15928.8549 9893.8633 8171.9894 23701.4899 14610.2672 6304.7796 5516.9538 16639.0884 9471.6013 21673.2714 11725.7815 16998.4602 6025.4399 11141.5222 51611.6384 7454.3024 11175.3016 109452431 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8771.4425 7795.1154 3327.4212 5147.8871 3045.9468 8856.7446 12458.4693 5372.916 215095.5029 11271.9422 5344.0495 28991.4346 4148.696 4148.696 8385.6991 14420.8127 9852.5309 19656.9329 25185.3197 7264.8331 4175.8102 6314.7582 4128.2435 20835.8177 14967.7939 11383.7019 4514.131 9258.9718 11211.3304 6321.2585 14622.2196 222477096 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 80730.9927 17398.9168 33032.9085 48797.5462 36340.2702 2047817.4014 69823.2919 28027.2753 50423.1833 33570.3416 50824.2498 86579.3222 892220.4764 46580.1143 37270.1509 46555.9239 28070.8382 28070.8382 52965.3651 51101.5041 30752.2223 89005.9024 99009.2471 60783.5374 26847.3751 19501.8469 42630.3864 35642.3452 76824.5691 20364.4785 214319.0332 17785.7707 27669.1838 122685.4663 15921.5603 43243.9324 355533111 mmox Carbon Cycling Methane Methane oxidation Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 26307.6277 48443.6515 31263.6328 30170.1753 34909.4284 15656.8739 28926.9737 11543.4576 19551.3366 24506.1654 53977.2111 663658.0643 37628.8323 44486.404 41159.342 31385.309 31385.309 14745.5861 45301.6814 44863.2845 79777.9208 55640.6253 15473.3038 18894.8196 24059.4355 42309.1042 54185.7752 90166.4214 55874.219 65447.3209 394222.5745 21749.0774 23415.8043 47747.4597 51391.0033 262078285 urec Nitrogen Ammonification NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 12060.2424 57368.0291 9135.9437 8100.8211 8913.9091 12275.4859 27136.3083 228844.53 465289.6186 15907.9339 19446.359 36090.9013 36090.9013 8774.2659 24749.4274 7006.4141 9554.9065 11486.7417 10721.4744 28119.8 19198.1871 43124.6219 5274.5387 26308.323 20565.1199 15377.3909 5947.2565 10851.3239 24484.8353 8236.3634 5516.6846 18996281 alkb Organic Remediation Other Hydrocarbons NA Thalassolituus oleivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Thalassolituus; 4660.869 3298.2262 14218.4172 3516.2836 9544.8178 4487.7672 4487.7672 6796.1226 4616.0756 127338.6316 4816.3137 4658.9237 6744.2744 12101.4001 9641.6244 6906.4004 6661.7494 1883.6933 4764.7505 4497.9362 2714.4816 7488.586 226347403 EF1a_Jakobida Other Phylogenetic NA Jakoba bahamiensis superkingdom:Eukaryota;family:Jakobidae;genus:Jakoba; 27103.1073 22816.1569 12191.8324 4554.075 5628.4408 6235.9553 7478.5165 12091.286 11222.0539 11080.0509 140897.6076 17725.3328 11331.3481 23502.3949 16331.4795 16331.4795 6194.9545 21648.5661 6525.7784 17677.2195 17466.1668 10866.8797 5552.8947 8905.3737 10077.0315 17905.5101 33976.39 11065.3043 15318.7444 4709.816 12010.9507 14250.6901 6663.2596 40392.0759 298410433 amyA Carbon Cycling Carbon degradation Starch Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5941.0565 20166.8972 9515.7762 4110.5082 127511599 cysJ Sulfur Reduction NA Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7467.9188 9473.0037 4966.4963 13407.7752 5106.1929 5007.1284 5007.1284 2661.3584 6070.8712 14960.7667 2563.9861 4411.3309 345876475 nirb Nitrogen Assimilatory N reduction NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4822.4033 18141.5376 226717.5146 3628.1892 2879.5521 35715.2947 23557.841 6133.5268 820318.6624 6044.2469 3294.741 6357.0137 4901.0631 4901.0631 6435.5587 17366.7806 6253.2815 12321.1063 16499.7711 2970.303 12754.478 9270.6198 3827.3425 24668.0591 90678.6164 7655.8223 6780.3756 9643.4233 9385.6219 3514.3083 8379.8934 295103193 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii SL3/3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 20822.7559 29815.2815 9195.8074 1843793.0013 17972.0357 16723.9624 36062.6557 7413.2291 83877.038 23171.2604 137583.3631 315428.5864 17982.238 20938.8241 40093.2915 25176.6275 25176.6275 29505.0056 28144.9483 23045.61 21305.7777 42815.5548 27081.9004 17439.1063 43307.5213 54515.9326 73297.1521 47500.7008 51058.2769 26748.5048 34385.5119 36181.9814 18892.9848 18586.6332 45358.4207 56314660 arsc Metal Homeostasis Arsenic Detoxification Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7932.4466 7283.3973 2843.7624 4088.6068 4993.7821 2765.208 94005.1824 5220.9848 5690.3145 2930.6431 2930.6431 4518.4304 8548.4233 5050.3233 5644.0144 10213.6952 6347.4761 2668.7515 2843.6937 6503.7259 3066.2129 5763.8373 2175.2763 5560.2067 4675.1251 2539.9552 5254.2382 7804881 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 7003.9461 52731.3422 17921.8649 5643.2379 4656.9117 3018.704 4463.2089 9589.8176 3510.9967 6305.3778 3916.2311 139375.5246 7341.5306 8304.8802 9783.6697 7977.3942 7977.3942 4766.6702 11447.3142 5313.7235 8925.6113 6050.4144 3619.1258 4945.7704 13654.5106 5099.5077 11452.1046 4049.0939 14256.2712 14873.4962 7211.2375 6380.2159 2810.7821 33320471 dsra Sulfur sulfite reduction NA Desulfovibrio piger superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 21436.1529 10569.4318 20465.2251 55579.4524 8319.3398 65626.9318 55643.8443 10942.0979 13463.1555 16297.8954 16669.5665 704241.8455 18996.94 18271.1083 24885.6913 14948.2816 14948.2816 12607.7239 21828.4301 22970.6357 33353.3887 49757.107 215295.7191 12376.8275 12141.563 24135.241 9176.6442 41487.9153 20826.3388 23633.5355 94280.8528 17105.8336 16576.6963 9972.8321 29136.6316 254473394 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 13794.8205 6179.922 10439.8697 8399.2278 6815.6519 4726.8523 8403.7237 10583.2517 13399.2544 166664.8324 15103.6543 10545.9107 6889.3479 5415.4715 5415.4715 6442.2195 18835.1318 11669.6721 28878.0356 10954.3094 12523.7913 7614.7628 8372.8582 14990.6073 8900.493 16095.19 7826.6336 17550.2621 29252.433 7341.7752 6345.547 4846.4399 10329.2825 422314041 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6184.7131 8520.5386 12136.5143 3217.5848 4852.6692 2059.244 6882.306 8631.2876 2565.2663 352411.7876 4996.7298 6065.5351 9907.5756 6394.2529 6394.2529 4040.5517 7510.0967 4372.4786 4958.3637 6087.3999 6967.2849 2373.6334 8075.608 13140.1529 7003.4705 8308.3277 1872.8848 6068.2727 4487.396 2763.8943 334704324 mer Metal Homeostasis Mercury Detoxification Aeromonas caviae Ae398 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 4279.3842 28849.4331 2564.3101 3842.0655 2600.2472 59918.3552 7893.1195 4092.8452 4092.8452 5218.6409 3759.4426 2517.6673 6546.4239 2609.1798 5394.0499 12864.3599 2432.8596 4387.5744 2955.8703 5917.2022 404442422 scnabc Organic Remediation Others NA Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 8337.7714 2809.9572 3604.7628 2859.6526 5869.6739 8939.4309 12113.4664 76088.0593 5338.3216 11515.5906 6730.0859 6730.0859 7775.6759 9692.3864 7008.7154 172058.7976 12663.3473 6040.4257 4566.6849 4426.7883 11097.4782 3901.5616 17961.8964 8633.6621 11187.8494 2568.7638 14770.9688 35379.226 3449.5724 9833.1408 94549921 mer Metal Homeostasis Mercury Detoxification Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 8392.3086 5714.1748 6529.6136 18774.0341 6944.8878 5693.8907 4833.5379 7062.8719 8605.5207 4577.6858 175925.794 14779.1608 8953.6958 9390.5429 3964.9622 3964.9622 7091.118 11917.1853 12472.8581 9318.6843 10837.9954 11401.0243 3936.8884 4846.3329 16397.8458 5774.0019 22543.3756 8203.9061 11763.6266 4736.5491 7238.8813 6415.3977 5101.0087 11829.6052 307719158 ara Carbon Cycling Carbon degradation Hemicellulose Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 15046.8148 11041.4844 11300.4787 24634.8288 3731.6402 6824.2073 6219.52 18964.5483 9630.3543 6919.6174 71218.0122 9150.9214 8377.6225 11873.5591 6956.7215 6956.7215 6370.5016 9123.9872 6649.1469 8810.6172 9364.2417 13343.7982 6079.117 6748.5949 15804.9549 4892.685 15358.4997 5680.3316 15067.112 6063.6839 10612.7398 5933.3122 5543.4567 18249.5274 47182 merb Metal Homeostasis Mercury Detoxification Streptomyces lividans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 67923.1478 15500.271 32042.8784 28748.6655 6416.0017 4982.1572 19807.2024 59593.2884 14636.3584 19366.8011 40712.3309 755922.0465 20960.0436 19649.2092 47612.7472 26065.4182 26065.4182 9596.2879 31081.9171 24984.4901 16928.7995 118507.8737 202327.1093 15824.9013 22218.7479 20260.3793 13169.3493 36677.8516 21613.2455 33733.1558 12333.0443 22559.9068 28382.1069 12964.3948 30306.2649 389872731 exaa(moxf) Organic Remediation Chlorinated solvents NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 19773.1415 19988.8547 6389.9268 26007.1294 9806.4403 6305.0964 12720.5531 16417.6054 9307.9067 24784.6882 13370.468 60103.6358 303749.0798 72971.9771 16306.4961 13501.543 17697.1945 17697.1945 19188.2079 40698.6319 12209.3556 12303.8507 12820.2302 17323.4607 6204.8993 34546.8958 25427.7383 20560.8932 31932.2329 19871.7074 25548.4132 53747.1172 22926.9927 11436.7868 13327.0687 36757.8651 341821122 cpna Organic Remediation Other Hydrocarbons NA Weissella thailandensis fsh4-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella thailandensis; 8297.2334 7897.8002 4225.2704 3592.5824 3017.3939 3186.1677 4987.5166 9350.2488 2829.9624 99162.7589 7853.4262 3810.5072 4424.5984 2128.772 2128.772 3927.9313 8884.4884 5069.8939 6707.2159 7071.4916 5769.3299 3606.7733 2774.488 9152.6207 4452.4459 13540.871 3751.6686 7820.6841 4019.5717 4937.6701 4535.3503 3835.3682 6823.6384 240171183 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 21025.1773 106995.3296 23134.2525 19282.9888 25515.8924 14989.8336 14648.4502 8813.1786 12003.3766 15733.3589 25058.1816 384152.44 18616.9024 18534.8491 19030.8165 13066.411 13066.411 12601.3774 31040.4351 18906.1389 19367.3401 78777.5148 53354.6908 51542.2734 19480.0668 25489.3383 7939.0096 1117597.8033 13591.0138 23559.7028 10443.033 11979.8756 23778.4128 10299.9947 23756.6978 333937531 urec Nitrogen Ammonification NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 33657.141 9042.0789 45350.7609 27990.9642 18816.0191 27627.2098 33810.621 77926.2966 21777.2735 25131.2847 17116.8167 339902.2432 22173.7132 35161.2238 26901.9801 17120.4016 17120.4016 10228.6476 48069.9453 18909.6326 16533.8872 15895.9026 15137.2369 22371.9243 22153.4946 35625.2672 47483.7168 47412.6045 44884.5999 66892.3686 15260.5552 17268.2581 23232.7025 24163.4143 167145.5773 93358210 alkk Organic Remediation Others NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 260355.8105 51600.5442 17106.6391 36189.2515 8006.9573 20150.9342 57437.3008 93104.1693 23125.5806 41525.6022 43935.2575 558251.6956 29465.4149 79752.4738 63393.4469 26369.5548 26369.5548 28097.9116 85773.3369 26897.8571 29408.3797 36298.6949 45524.4382 28563.7458 48290.352 52067.2273 24689.1906 78853.958 433288.5514 49869.8655 31917.772 43727.5124 57370.045 20359.3964 57989.2457 163761346 arsc Metal Homeostasis Arsenic Detoxification Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 118160.3969 24414.979 96989.3606 63311.0687 10243.4876 21732.7531 71627.1089 21467.7584 43694.0942 139027.0843 85653.2829 566816.8252 123683.6 41773.4265 243443.7501 52129.081 52129.081 34609.857 70512.4236 40692.1538 109136.7837 47105.4475 30017.5629 26421.7011 29351.6279 39107.2403 81995.9287 222855.7519 54852.635 42145.1247 31733.1388 54305.2206 29508.0804 157096.121 61406.3396 298290657 trze Organic Remediation Herbicides related compound NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 23885.0417 15517.3539 9533.6624 15941.5956 12550.2565 8104.7339 37621.1439 4191.2405 20701.0295 14141.7875 16697.1829 152636.8457 16463.3393 37735.8766 22041.6293 29225.9755 29225.9755 13436.6992 22167.5033 12200.0094 16295.2243 22291.9649 32841.6848 24271.5656 17075.6432 27937.8088 11215.9591 36445.1297 18374.2155 58213.4758 18060.2147 13299.8913 23050.7769 8604.8197 30571.2202 310778306 amyA Carbon Cycling Carbon degradation Starch Ilyobacter polytropus DSM 2926 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Fusobacteriaceae;genus:Ilyobacter;species:Ilyobacter polytropus; 13165.3667 23377.8736 17778.6413 9782.2358 17531.1839 15433.1472 7178.4919 14550.3691 15705.3568 11019.1364 452897.0999 19194.4711 17603.2722 32544.0521 17773.8668 17773.8668 10580.8193 25126.8127 16575.7512 18374.769 18520.3515 20411.0736 7714.9053 8630.9179 15199.7388 7346.8777 25860.2599 8432.3777 20901.7694 6900.8308 10361.893 11460.5769 9493.6097 30563.9476 389864501 catechol_b Organic Remediation Aromatics Other aromatics Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 112629.5597 91869.4429 73995.0823 362716.569 85090.17 9998.0331 58007.8787 149361.9387 104386.5108 104061.8781 186211.4701 100633.4854 1025317.32 89451.605 144282.3273 167621.9407 282055.9334 282055.9334 128702.5283 232560.3189 124439.2206 111175.8713 217812.0349 130706.1051 144036.369 384714.7646 144978.2337 119583.0992 319245.0523 133655.6077 162916.9995 84314.9819 138137.9221 199860.0982 84124.962 149569.9127 157369466 chitinase Carbon Cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 16761.6729 8571.7066 15131.5684 22262.5106 10086.8546 9455.0842 3616.9816 9535.5166 12331.8004 7977.7367 293149.8771 10273.5421 14843.67 5665.5405 5660.3129 5660.3129 7679.7784 22744.1841 13014.4724 64456.9643 22563.3983 5474.2156 6191.1872 14497.549 8207.1172 27724.4158 13442.7072 23360.3181 10827.9229 19177.0144 11078.7973 7883.7423 26000.5285 299133803 FBPase Carbon Cycling Carbon fixation Calvin cycle Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 6402.8974 4526.9299 12660.9776 9753.7401 3225.8182 80718.3593 3907.4248 4350.789 2906.117 2906.117 3848.1923 85785.3495 5324.8273 3310.0128 7464.583 4607.1542 1958.6421 3649.6615 2086.5635 302550556 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 339577.0438 58222.8644 76618.784 148638.2181 228458.4498 65384.8614 114363.0183 87686.3355 163862.9356 126981.5153 180759.0402 152055.9122 2624764.5494 153192.505 249727.5658 148128.8248 90575.5921 90575.5921 140683.7863 96984.8489 48257.578 86804.2714 199020.7768 156054.916 137184.2041 60267.731 82394.3667 293344.5811 267631.7435 100649.7244 101103.8624 76395.0039 133462.6982 63588.3286 44323.5297 134474.7068 30909240 arsc Metal Homeostasis Arsenic Detoxification Agrobacterium sp. 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 5819.1988 3564.8612 6313.9933 2210.2873 3370.3815 3850.7564 4026.671 66858.8827 4330.8831 4291.817 2800.1783 2800.1783 3395.6839 14240.7629 5911.9373 6877.3434 11029.7158 13079.0875 5010.6141 3506.6426 6712.8182 5125.7993 9675.7598 5935.1106 8238.9298 3828.6216 5336.3881 4924.496 4643.1361 5729.2553 157804759 APS_AprB Sulfur adenylylsulfate reductase NA Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 21270.6275 11570.5716 17451.608 35179.8187 47920.0212 14447.843 22423.8043 13551.3461 7594.7116 17088.8144 21461.4886 17647.0532 512237.8781 28035.802 21467.1821 65400.8649 54221.3463 54221.3463 17126.6817 32669.761 19933.1246 22379.6978 24266.9553 28552.2332 14199.3448 15848.2456 30425.5617 13594.7581 54264.8673 13529.0829 24994.589 12147.6822 14956.7188 14869.2259 10930.3051 23019.4185 326322159 xlnd Organic Remediation Aromatics Other aromatics Paenibacillus sp. NyZ101 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7592.7549 5527.4176 5809.5412 4917.6585 3035.6794 2700.2374 5183.2891 5960.7916 2783.4003 149845.2453 5035.4498 5033.7595 2672.4214 2672.4214 3760.5717 9496.1696 6366.0003 4649.3522 6364.6505 6335.785 3071.2843 2756.0229 7974.9772 4212.0946 10974.505 7596.8511 2592.2077 3095.926 3387.0677 3606.2653 7338.8336 118705684 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 25487.2657 46262.7061 50748.5495 38814.7212 50614.8587 44280.744 10071.3647 18529.4301 43000.3886 20068.296 732236.9055 35609.2294 22954.7994 83984.079 29349.8518 29349.8518 20963.8123 59352.3685 20239.4761 25869.9589 15770.5035 15461.7381 11466.2679 30566.8201 31419.437 18495.0696 52934.5084 43102.547 33402.842 58221.8466 24792.7079 30964.8878 14278.2206 16530.247 118170744 cpna Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10422.7374 4103.9937 7711.508 2207.3437 7182.8136 4893.2131 11107.0536 5456.0631 90358.9632 6833.8246 5239.0047 263666.7438 3586.999 3586.999 4460.6775 11623.9644 13324.2346 7192.7971 11323.3477 6256.8945 3943.295 4736.6161 9840.9576 7576.7207 17554.4159 6130.7785 13935.7344 3330.482 4680.9601 6677.0853 3545.4737 9847.752 288351737 vgb Virulence Antibiotic resistance Degradation Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 112766.3086 11048.5407 12622.2546 1281760.7989 8482.45 7770.8351 19405.9943 21273.4741 26236.1392 50166.0031 14426.0067 616361.3435 43377.8897 19133.6967 22402.3959 23816.9965 23816.9965 17383.1914 48895.081 31058.1299 26066.979 41895.6189 23440.3252 15114.0085 15374.0422 38148.9033 20854.4659 53073.2789 26373.7811 39116.0084 14860.5717 28553.74 56311.4683 19338.6935 32243.5657 295440742 Sir Sulfur sulfite reduction NA Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 43776.9364 11965.6665 17465.692 15556.9726 11235.4436 15181.567 58087.5025 17148.385 19369.4236 32409.1026 38390.9759 1692224.8322 57781.7008 22682.4756 32845.9548 27844.5105 27844.5105 18548.7517 47897.1336 32807.359 23769.4539 36388.7487 27397.3386 15312.7173 17316.4689 61825.0887 37322.4751 61981.978 31227.4634 41690.647 34137.4088 31476.1268 31784.2678 107036.8515 32413.9586 312213532 badh Organic Remediation Aromatics Other aromatics Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 42198.3563 6315.5483 11366.1426 16314.2026 9220.1131 5710.6378 6622.9292 15009.1975 15014.2039 7691.7433 266290.2999 12484.96 11378.9459 10028.1684 8502.3947 8502.3947 12931.0663 22194.1963 11741.7856 832526.4452 35282.7594 18846.2362 9906.0626 68190.4462 19120.6905 5459.4348 29958.0226 20530.0391 17556.5024 5272.0319 11650.9663 10598.5655 97698.5147 12199.9338 114548970 mer Metal Homeostasis Mercury Detoxification alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 155536.5824 12826.878 22858.5938 85348.8375 52987.4745 23213.6747 42113.8007 57241.4874 19893.3993 41414.8667 57468.1994 26024.4559 1085382.9021 62822.1193 69426.107 55546.8162 35609.2598 35609.2598 40869.1259 84949.7877 45938.4609 93299.2065 46227.2304 47458.8145 22870.5567 28048.2711 51756.6971 37011.123 70629.0243 24881.6524 47513.7857 19662.1899 29404.8147 30654.8635 19444.4933 45878.3331 319956117 SoxC Sulfur Sulfur Oxidation NA Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 6695.3097 5754.1656 5180.2919 4710.6481 2315.1641 4129.5681 5963.7147 2378.1952 123133.9133 4844.596 7106.9277 2971.2835 2971.2835 3796.2769 11039.4959 7616.2183 6342.222 5807.988 5080.5705 3094.5102 4033.6837 8330.756 2815.2916 10419.8649 5773.2505 8999.0719 2282.0889 4514.3211 4825.5889 3569.7644 7899.5176 2331052 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6643.3947 5689.2063 16840.5083 12071.358 8259.858 6441.3449 3501.5412 6254.9904 5023.2456 3851.7454 95114.2454 6749.6564 8418.8968 5073.0905 7006.7008 7006.7008 5347.1938 11554.9796 8101.9677 6639.8473 9880.63 10816.17 2928.7039 6217.8797 16339.142 3609.966 16697.4551 12448.5328 12634.1617 5320.3293 4929.5136 7881.6829 7236.456 12032.7937 99030603 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 27220.829 3359.5563 5203.4315 7391.4452 10455.4862 118581.1986 6225.2807 5466.0134 6734.4392 8795.5612 6045.4248 7412.8381 8678.5858 6493.4917 3452.6289 3388.2741 10978.1372 9334.1895 5977.547 2870.3623 4878.3631 5382.6393 9117.1719 187920807 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 625079.7424 238959.1379 522235.9237 470959.163 1183625.943 153815.7557 480106.079 546788.3183 512152.1722 465557.3948 641928.8812 384049.8686 11879345.6813 519260.9123 554536.2754 808662.0635 554458.5943 554458.5943 493987.5582 512973.0453 286851.3554 424790.3465 780612.7106 817632.9099 330775.3592 246517.2585 428043.2297 331126.8358 1049805.7399 483915.1376 669998.1928 241318.0377 398692.3721 300571.2128 326989.6915 817537.7843 404252197 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. PAMC 26621 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5229.7531 29793.4351 15780.7945 3142.7876 2681.0329 6421.8566 2362.1111 2362.1111 8001.1084 63440.5403 6627.6087 5573.2021 2223.5741 2916.0901 110646365 alginase Carbon Cycling Carbon degradation Alginate Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 81222.9876 25712.03 44924.1976 12834.098 6084.5198 16289.6052 43919.2815 14645.9774 26239.9654 41770.3881 19621.9322 471139.9514 48631.4356 25914.1747 18844.8812 25994.5139 25994.5139 37169.9139 36876.3168 31046.6379 100833.8402 126496.1938 29466.0856 34117.3172 25077.4901 26819.4556 31565.3704 49815.5165 31810.356 38901.7144 14501.2409 34340.3715 24272.9322 16461.2926 156940.3717 299772624 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 79283.5829 47506.9092 33409.3115 23927.9465 7818.8501 134455.5483 70689.6325 298312.5434 194067.5948 61041.6523 434842.5156 27946.3849 72501.1719 121859.9848 70992.6817 70992.6817 49303.0208 83708.383 29141.3312 42122.3739 135155.9263 128390.8178 34044.0193 52434.5001 32862.5447 116941.7499 63880.7877 71289.3369 59714.0512 31281.4878 46666.6388 278995.0453 46541.769 79404.5633 72121857 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 34222.4507 16957.4 243789.943 9649.9426 21333.7482 59154.9966 34167.8335 17289.5534 27924.259 44153.0773 69229.6311 450205.3598 23371.2611 36021.5287 58293.9803 24421.8487 24421.8487 20628.279 55989.1298 26266.1462 33725.319 177136.5672 88156.2492 18135.3993 21895.404 28920.9154 22841.6632 91765.3914 32041.1334 57472.8834 15729.9853 42889.5886 33525.1564 142632.2045 100246.0819 89344640 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 12135.8358 7871.8928 32783.1945 9737.8314 4492.1635 6104.9068 3448.5189 8414.2457 12214.7268 8963.0909 158593.5806 3950.7748 6265.6656 4549.9213 10540.1256 10540.1256 4253.5787 18139.1296 6205.371 11416.2338 12551.5578 49546.9821 5343.8516 6099.0975 8810.6415 9295.6642 21848.0194 7073.0343 13241.4199 4031.9246 10329.2474 6065.6144 9116.5165 17945.9772 229610707 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 634212.4539 66147.6131 222797.3517 72864.1532 1059135.5362 27954.4584 68602.0387 124680.2672 40997.131 99299.5882 105221.6838 48066.4196 1018840.3894 228493.1681 170235.2633 74291.2655 85605.4915 85605.4915 48356.1333 137462.3773 81131.7409 38254.6226 57703.1567 258590.1016 33391.4524 73500.1691 142907.9511 63903.7873 167488.3575 159824.7364 81497.4244 52787.5948 159892.995 60677.3944 385902.727 466023.3372 301319176 cda Carbon Cycling Carbon degradation Starch Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 45287.0094 223780.1986 58667.4932 19739.8885 4437.2343 16871.3108 13953.865 8432.6691 16506.8577 10827.4308 108668.7689 10221.894 41332.5804 11199.0708 105526.5 105526.5 6302.5464 50641.3155 9806.2225 16727.4762 129254.2903 7704.2093 7402.4277 14211.8826 10388.0737 9968.2999 27199.2013 14089.9338 25479.0031 5587.6377 42391.0446 11122.2492 11763.5544 9082.418 338168419 catechol_b Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 43483.8388 12491.2593 35344.6332 12202.1412 57551.4101 35410.7207 39499.9082 6766.3098 33941.337 50282.6994 43071.0863 221549.442 20871.7724 28123.0511 33304.5074 21441.8908 21441.8908 9058.1524 29803.2494 22350.3983 75379.3973 70967.6431 23849.3581 12246.9829 26567.0235 22987.2156 16538.0877 34288.5808 23190.5533 28989.4653 12854.0803 27033.4762 22314.6115 11674.8025 95585.1363 295661771 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 12309.3293 57615.2613 5428.6734 5253.6844 38682.1465 4523.714 8543.1659 4726.2288 3407.9054 6020.079 55509.937 9311.8319 147427.8636 7809.9797 23004.3332 6660.8755 5536.3478 5536.3478 5307.2325 16114.0617 8535.7478 30099.6907 16971.9541 6004.3793 16048.8284 33392.2963 17300.7798 2984.4928 16488.3459 7059.892 10658.2429 5266.0273 5317.386 26379.7405 4029.0294 22905.5251 356690745 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4782.1772 4842.1819 5560.0137 18879.2112 6952.4734 3517.0091 2580.4741 4714.0221 5981.1452 104946.999 7104.4067 6159.3266 3277.2075 3277.2075 4660.3804 10303.6315 6342.223 7026.9645 4454.8687 6440.7509 3205.0198 3317.119 9093.5298 3748.8713 18284.0654 5385.6016 6810.6538 2801.1064 4394.4505 5096.1717 3213.8253 8700.9517 211905431 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5042.1643 2445.9156 56820.1734 2907.9272 3974.6206 2330.8936 11163.3473 5408.7712 5027.7748 2278.1642 2887.4185 2328.9075 5419.5885 119225912 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 193525.0102 16888.3919 81184.0502 225396.6701 33394.9846 33301.0398 40146.9776 85155.5853 141192.6556 98287.0276 56457.2553 117833.3017 680572.374 80578.3028 79548.6612 103466.6658 121923.0921 121923.0921 62130.2886 129430.8471 62679.3743 78374.3599 90303.2013 45878.7243 153953.3183 105306.7993 85284.4997 46175.8386 128923.9772 92377.1718 91029.5859 43531.6935 181233.5247 93009.8622 79834.1632 96790.5811 357014154 urec Nitrogen Ammonification NA Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 10977.0825 5555.3157 10528.963 27437.1884 15161.0621 7945.4555 5726.0821 8145.9461 10470.2157 12762.228 184650.039 11270.9806 10606.2895 10887.073 7211.8818 7211.8818 7266.4701 15440.7161 10302.6915 9438.6694 18045.392 10696.5526 4742.2484 5272.2985 12908.3515 6412.4016 18763.7745 11812.2218 14749.0284 8651.1549 7883.0969 9521.6524 8432.5621 16593.2908 153009769 urec Nitrogen Ammonification NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 14818.3362 12814.5245 8828.0124 44297.9025 5090.227 4643.1425 7406.6442 3062.5192 9108.8177 12169.6335 6300.4674 221547.6888 8230.6116 18849.3181 6000.6908 5236.8769 5236.8769 8712.3664 15755.3357 10948.5815 10096.3685 14233.1257 8282.5859 7559.9545 5215.7774 20433.4902 5729.1386 36040.3004 10333.6912 15134.6158 5212.427 8912.2821 9933.3828 5482.9859 46027.3223 56566204 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5125.4767 5898.6072 5251.5238 5657.0987 4650.5398 3708.4397 6612.2694 9236.6443 3723.4431 119410.6254 10452.1643 6525.3309 3349.0077 3349.0077 5243.7841 11139.2407 9595.9195 11080.6925 8366.9508 9035.512 4613.6596 4089.1573 9195.8083 4303.9422 18273.1467 9922.279 11854.1024 3283.6839 5630.6517 5654.7807 4261.0055 14599.6302 222543122 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 12942.3082 15073.946 6073.8357 46992.6191 1625.9086 31330.9239 45134.1083 3483.5159 6866.7286 2663.2782 4086.8056 4520.5421 7289.8284 7298.963 7298.963 2844.4629 7390.7285 5870.3435 5633.5528 7617.5342 5553.4399 10644.5246 6799.9848 9654.728 31009.1139 3423.8178 9080.0362 2832.1356 42558703 atzb Organic Remediation Herbicides related compound NA Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 11202.7121 14661.6393 11055.2659 12192.7032 7748.8786 10651.4505 6405.4559 8158.2727 7833.4913 6148.8985 191535.8792 7022.6145 8473.8289 6242.8413 4087.2896 4087.2896 7888.134 12136.8874 8595.0716 6320.2658 6675.7867 10820.4925 5827.9704 4949.8185 10228.9282 6672.6686 13216.2143 4071.9818 9706.8536 3584.8472 6396.8952 9355.9544 3467.1172 11721.214 392384227 exaa(moxf) Organic Remediation Chlorinated solvents NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 21909.3179 18314.5363 14641.3572 27604.1965 6463.6779 8777.489 10287.6573 7950.1801 13090.8447 58707.3318 19628.368 374485.5905 12533.0979 18223.4054 31502.1589 16704.7483 16704.7483 13033.4966 29485.0016 13806.7765 24359.6805 22752.4624 10416.3454 9306.8628 30147.6844 36796.3498 22515.9718 40750.381 24351.8732 27414.255 6936.5195 13513.9113 20965.6502 12722.5636 11231.1707 308212885 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6967.4057 22223.5217 5255.6874 3463.4268 2458.9404 5819.006 10087.1543 4708.9097 121534.3524 16974.2652 4785.0374 4651.0312 2751.4683 2751.4683 4698.8731 9871.2363 8071.1704 7422.407 9748.5662 9844.241 2847.4129 4067.5859 16055.7439 2957.3936 12271.4687 8328.1829 10441.4729 2963.2271 5902.0436 12639.4787 3244.2665 7031.3824 303293397 amyA Carbon Cycling Carbon degradation Starch Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 12975.4097 4749.4419 5836.6727 12459.1241 3074.8709 4516.2441 2652.8911 5390.5278 7575.5695 2762.8093 6027.309 10502.5734 7259.7722 3940.0873 6698.0702 6698.0702 5484.8585 10474.6813 7529.3996 12279.4785 11448.4171 13106.5126 4307.2565 3409.3275 11169.9441 3547.9803 19366.4469 11986.2634 26965.0224 5043.7115 7439.3249 6537.8794 4054.2509 11805.397 73537968 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 50395.5301 23135.7211 16991.5646 20493.5569 11811.5216 75610.5555 103580.7558 41795.9968 22638.5536 39292.9 204638.3292 437860.5528 40898.3136 55237.9153 63543.4928 64512.7797 64512.7797 15386.0824 47924.1337 37344.9635 42378.1095 125536.9559 34760.8637 146561.9956 38723.6072 38764.5008 66132.8601 65486.4648 19620.5494 57383.3175 14708.0715 49263.42 64805.3531 20457.8486 28047.9974 197087808 phenol_oxidase Carbon Cycling Carbon degradation Lignin Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 26288.7902 12512.9472 9156.7326 5094.7386 221346.6602 3835.6038 7284.1839 10643.0548 2518.0443 2518.0443 7831.8067 3876.3537 4801.2553 7186.2358 6977.5702 8317.0109 3507.8201 3943.6581 9689.9961 183976694 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9311.814 9962.702 18922.9021 11110.3519 10209.4824 11855.4876 7370.2449 10022.1429 8559.6632 6966.9511 302533.4576 14995.0702 14245.7577 26128.0164 9391.1749 9391.1749 11592.8178 20123.3041 13115.4904 14856.1201 11501.3097 28163.8691 5021.0736 7802.4483 21436.375 5501.4509 24438.9325 12912.444 20261.2058 6363.2887 9734.9024 10436.6734 5208.7787 12709.8713 390411811 glucoamylase Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 5673.5815 5677.0453 25486.9643 6288.8683 7147.1194 8779.6963 298991.1678 11721.364 8646.6246 7965.6301 3967.1872 3967.1872 335668.5641 9140.712 9887.6452 7294.2124 11308.7569 6602.7693 8081.159 6774.1427 19056.3992 33983.7229 76284.9439 10265.0539 9760.2926 5001.4557 6801.7404 9315.2991 5189.8296 33955.3246 365892786 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4110.8483 18380.4131 30973.6474 2529.7474 4246.7059 3868.0984 3668.6258 5329.9955 6978.2925 3186.6482 4952.5518 377525243 ben_bcla virulence NA NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 18867.9256 5327.6041 8729.443 2991.0945 5377.3053 2980.4856 5223.0759 6579.5038 6349.4672 195320.7868 8436.2818 9295.9046 7720.7327 7223.8033 7223.8033 4812.3738 16541.8709 8154.5884 39282.6233 12438.1418 6200.9014 5674.2416 5030.3062 10528.0726 7801.5589 12122.3403 7982.8761 19445.8414 6005.9677 7051.2351 4957.8783 3133.2601 7098.5409 254941670 invertase_fungi Carbon Cycling Carbon degradation sucrose Lecythophora sp. olrim22 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Coniochaetales;family:Coniochaetaceae;genus:Lecythophora; 13926.9377 9607.6616 11342.3484 10886.858 6106.7928 15412.9569 12704.8422 52382.5012 20804.6524 20124.6221 7289.861 478364.9365 31135.6147 16426.2258 17771.0773 9208.1517 9208.1517 9915.2925 26900.5517 21806.1184 23162.0264 19826.0962 32206.1607 11089.7243 9019.0545 18115.8025 25950.6773 38200.163 18408.3243 25994.9341 11548.1833 17588.7818 30563.2534 9562.962 20222.0517 225155811 pula Carbon Cycling Carbon degradation Starch Diplosphaera colitermitum TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 19811.8809 13006.1332 141869.9327 29878.2472 52052.5349 13801.5997 18083.8472 73430.1045 40045.3211 26178.8186 35494.707 11229.7716 450278.0914 22812.5883 30968.3026 22445.8336 20631.053 20631.053 18730.6709 63777.9768 21289.8183 25812.8661 25837.8422 30853.7482 10154.1035 19987.539 27952.9107 33687.207 258207.2184 28070.9834 35419.2181 35985.6702 11888.1433 17548.7833 10728.3184 120150.0313 238602793 phenol_oxidase Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4763.3306 95682.2587 30822.4941 10582.5077 7587.4848 4253.9192 6779.9831 5835.2497 90498.9454 17151.3198 10030.3778 9470.6243 10769.8242 10769.8242 7809.2766 32140.3537 4709.3876 5449.2463 2624.9384 4690.629 12968.6086 4004.0732 13640.3396 14502.6132 10526.4425 5409.5922 5166.5786 5794.1956 3391.3919 159467853 actin_Viridiplantae Other Phylogenetic NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 46777.8674 10656.6132 9768.5706 28970.2816 6156.6799 10298.802 9245.1415 4435.5766 14095.3309 16709.6818 21428.7115 249174.219 143288.012 24256.098 20378.8081 22555.7863 22555.7863 11431.5789 23043.6865 15657.5476 29067.0337 43526.8567 21281.2828 7486.4421 11870.9826 56954.0343 7365.3621 26720.9909 17180.7831 21873.7008 9967.1002 15433.6033 9917.1589 10625.3413 20251.2315 145570660 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 24436.4745 7694.2059 7350.5199 15839.1807 27766.3422 6895.2709 6204.129 9388.386 23709.2066 78738.6276 13868.384 16072.382 17521.3666 5192.619 5192.619 11308.654 26615.5645 24437.5798 4339.2665 11849.4733 26799.5559 6539.5804 8656.0783 9573.8328 30690.2164 16198.2209 4675.3182 19297.2791 5774.8763 11384.6845 23433.3882 13841.185 62596.0998 359734160 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 542108.457 151254.6571 93424.6333 466448.3369 56031.25 43292.4371 39098.3384 33577.3454 154930.9204 29242.8939 42578.8172 1791371.1927 36083.3893 29484.629 89588.987 26646.0089 26646.0089 21230.0768 38835.6744 21682.5253 40225.4295 45225.3521 52629.5921 11855.1154 19599.3152 38378.2767 113192.9571 966459.8242 90156.6075 249500.3802 20174.4355 23982.9756 96118.9162 20576.9948 62051.3497 270289830 B_lactamase_A Virulence Antibiotic resistance Degradation Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 24159.0369 16214.1201 10796.0583 13829.6853 34371.001 17931.7947 22538.7363 31804.2409 32065.6545 34429.0356 732143.2824 18014.0547 35818.5724 35501.4041 13555.9093 13555.9093 14640.9779 141243.2983 33638.0463 27461.6452 47522.9219 16418.8647 13728.6266 16894.1637 25340.5388 25717.9969 101421.6592 38296.3865 28939.1064 23021.4874 25169.8336 20592.973 22617.0894 24652.6082 329118398 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 17686.3285 10902.5573 8787.9541 33928.7492 5629.1235 19770.8156 9932.3191 5924.0701 7334.4589 11629.9244 13520.7928 233009.8212 13756.2117 11290.8663 9861.6393 5514.6555 5514.6555 10338.5516 16538.2754 9585.7825 10795.7794 11662.3314 10309.2634 9394.836 6512.333 16447.2553 39234.3813 20126.2027 29928.5101 18129.4783 8844.4643 11481.4281 7906.7773 6833.3706 9171.4897 340028595 tktA Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 18053.6224 19391.2432 7476.1987 8343.4449 3652.7023 67920.7326 8162.4865 6089.8521 8069.741 8069.741 5523.1527 37811.4351 2538.9175 4995.5844 6812.5654 4302.7402 2990.8573 4361.9136 2333.4621 306528381 cueo Metal Homeostasis Copper Detoxification Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 23604.241 1333836.8412 16965.5842 15607.3027 9029.2926 3094.0397 48520.2503 13234.0825 22288.6143 50221.9996 64812.5613 581280.1943 30508.9157 26230.9841 21915.5472 93802.7013 93802.7013 14416.7626 51945.2349 40055.0783 21073.8095 77828.6132 30254.6443 16325.1898 33296.3372 47510.8309 27798.8982 55489.94 22791.2569 51012.7445 15072.3104 53940.155 37166.6614 22031.9118 19674.1265 407694892 amie Organic Remediation Aromatics Other aromatics Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 100143.6149 25078.8572 67366.2692 70204.4323 74317.5675 378973.3915 318635.2216 142637.2591 56380.3949 70131.0439 75206.3998 68792.9875 1914880.9517 220007.9756 285671.5818 117317.9526 81035.7948 81035.7948 36536.1121 126743.8288 51090.8978 68440.1016 70524.6 64591.8692 33809.1927 76879.138 77131.1512 41289.5098 171960.8903 38824.5205 93604.606 50111.772 55007.6481 60934.5795 71798.4836 71448.0457 303282825 Sir Sulfur sulfite reduction NA Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 11124.3397 5765.7046 10064.1703 31905.2611 15744.0602 3808.5479 6821.5878 15751.6591 8273.1589 148534.9835 9063.7813 145012.3155 11439.4145 13610.8004 25637.4008 15405.5455 15405.5455 15749.8437 30436.4119 15348.7072 9603.8743 8063.6507 19481.0294 3274.5015 7700.7449 15977.9029 11121.02 53153.6396 24511.3826 29084.9122 4898.3045 6489.4498 6566.2798 7053.4289 6610.1182 227965842 urec Nitrogen Ammonification NA Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 17883.0201 20210.196 168434.0149 13736.2287 52973.0251 55584.9423 9366.0103 37304.0642 17726.6482 15276.3173 28410.8988 26021.9012 617996.3568 17702.8758 55508.3005 75916.998 153763.0931 153763.0931 11537.6817 35027.4404 19666.6685 75404.3256 41135.463 13159.6918 13326.0227 42009.8678 30350.0213 44080.6829 36822.6284 30922.3342 36661.9387 12503.6793 47300.8922 18784.9001 9555.2761 38594.1119 317969554 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 26409.2512 5391.1561 3484.0639 5362.4716 3734.5635 257792322 nrfa Nitrogen Dissimilatory N reduction NA Eggerthella lenta DSM 2243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Eggerthella;species:Eggerthella lenta; 9901.6569 4816.2079 15760.6389 4222.7584 5402.9326 3573.9693 7556.3042 5959.9636 7175.9371 94971.064 7642.437 7384.1697 5070.156 2101.4871 2101.4871 5025.3146 12572.9047 7854.1032 7534.7808 12098.127 9225.0546 3362.6527 5438.0823 9650.4693 3622.0538 16852.7643 22700.6516 10511.6821 7359.2547 9804.4751 4646.946 4340.9309 7493.3774 304407894 cysJ Sulfur Reduction NA Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 8712.7019 11875.2134 4901.3085 7753.7064 4162.1234 27904.8857 2842.7572 4930.7019 15609.7953 7022.6157 89184.4702 28783.1371 7438.7573 4632.4693 3843.581 3843.581 4496.2047 19352.2901 20480.4075 15887.4112 7764.8217 63336.592 6892.2786 8098.7244 10389.8711 12173.1149 19166.455 6999.5758 12700.1524 6654.743 10434.7471 7151.8908 23755.1753 16363.2727 377811822 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 12703.9631 8616.5868 6368.4508 11181.1702 10946.8159 7465.4048 10368.954 9641.4923 5762.5867 200130.153 11458.0871 9761.3492 6370.5923 4268.3031 4268.3031 7322.39 14225.3955 10034.2427 11251.5363 13129.4187 13998.7849 4259.9888 6903.3002 11977.7382 5610.9035 21515.5766 6178.8287 12820.3235 7912.1012 8113.272 7975.3239 6806.6639 16177.833 196112375 mer Metal Homeostasis Mercury Detoxification Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 70575.8993 23915.089 235189.8137 72450.4261 6865.3669 20076.077 196242.4534 120934.9454 32593.5129 33740.0555 66247.197 1013776.0266 97758.4214 54309.4531 51385.6356 93606.6954 93606.6954 76726.8796 67282.2579 54550.3657 73178.5159 215027.9266 28036.756 100186.87 36118.3441 159890.8053 127932.4072 226070.8281 142236.491 85825.8689 29839.6029 62823.9511 57169.0867 102334.6235 97841.768 323318246 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 25854.9745 5801.5384 498079.2736 23353.6398 14083.0472 40987.4873 15976.3491 18092.5329 11040.9522 233370.6603 10849.9165 15135.8565 11923.2913 12557.2826 12557.2826 22037.2388 23405.208 16089.8816 40639.2474 211458.8664 251258.5693 6838.0671 13731.7718 27417.3033 42622.2211 37532.9659 27204.5906 21055.5949 19921.0614 13186.4105 14562.2144 19968.3359 15084.9213 319754373 phytase Phosphorus Phytic acid hydrolysis NA Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 22950.2212 15944.3462 19608.2706 18678.2171 15016.4541 9706.6816 14999.2459 22031.0409 34761.3253 15937.9895 20871.9708 23667.51 575239.3005 30676.7999 23620.5819 27358.3944 20776.9968 20776.9968 17980.9943 178518.4446 29782.8662 33143.9288 23306.6582 28410.6301 11633.3181 14901.2169 35750.0133 15155.7228 48760.6919 44435.3212 57094.1857 25863.4595 16157.0935 16049.8347 14318.9251 30622.2537 67087537 arylest Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 20998.5202 4981.5305 6887.2128 15842.5679 6012.8963 8568.0263 2840.3608 6558.0229 12437.2527 6708.949 296975.5455 12474.0393 12522.9903 18009.1411 8490.1447 8490.1447 4874.4059 25164.1804 9972.0511 12114.1605 10893.8491 10115.5549 4309.7821 5804.29 12160.431 8219.7135 22601.9449 16528.2619 20968.4863 5083.7962 12931.54 13890.5704 4389.6414 10620.6134 147848175 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5712.5953 9311.2056 6399.4424 2233.5208 5349.6815 3691.5448 17192.9943 108772.7374 5405.0463 3600.4587 5000.5458 3687.5216 11629.7147 4815.2806 6575.7935 5982.1334 3662.7357 3403.0637 6718.2869 5321.4331 8333.576 23305.4898 6256.3861 2487.7767 4482.6206 6033.1097 2524.8506 5340.7102 297196022 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 20953.3048 13293.5854 24605.7193 11744.9307 9272.2197 7439.6106 11263.8038 9439.5229 19217.27 21070.6277 168301.6379 9970.4118 8165.9937 99249.527 11484.6111 11484.6111 4428.0701 37313.6523 7803.9665 13122.2376 76736.0711 10889.8418 8884.7815 14276.1184 18127.478 14565.4205 39671.8023 23322.4842 19557.0311 8095.0085 12856.7916 10794.8651 13928.0925 17841.5683 219996943 ppx Phosphorus Polyphosphate degradation NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 476730.1258 546601.8513 456545.6065 1456429.2694 1261605.6675 139570.6369 434377.214 424256.4767 160624.3242 278032.3885 238132.0662 297357.2338 16060823.9352 429520.263 779978.6722 1990740.0952 300407.0924 300407.0924 272668.762 295195.3807 187211.4661 762311.7254 428692.2851 738705.8195 267265.3528 191828.6792 285552.4323 208767.7097 607891.5217 468197.2604 351627.9303 368807.6744 175020.0189 221399.6322 337942.9383 306565.7312 189423194 tehb Metal Homeostasis Tellurium Detoxification Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8127.8667 5858.8014 3722.6233 8140.6124 4956.4393 5882.5242 2731.0571 102568.2087 14695.6679 5716.5554 4172.6846 3085.8344 3085.8344 4619.3104 15075.1235 13273.6176 5694.7672 6537.0403 3662.7388 3593.9834 8775.5022 3645.0639 14683.4117 6312.3663 9054.9444 3575.3184 4985.3797 5479.797 4085.6203 8297.8564 239627415 atza Organic Remediation Herbicides related compound NA Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 34142.1052 34240.3791 30134.0456 37087.3666 28877.7317 32780.0941 37781.5856 22113.1018 18942.9139 37550.4031 36590.1446 23623.7748 934912.3326 45260.9868 31783.7738 31124.1854 31872.7455 31872.7455 17255.3514 54717.1813 26531.3232 53331.5797 57789.3894 37739.6634 15524.6166 23145.811 33818.5179 17649.9259 69252.3536 51577.9663 48686.3328 21269.0098 22389.0571 29193.3019 51400.1362 28638.7743 57640778 arsc Metal Homeostasis Arsenic Detoxification Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 8394.3016 5402.8888 9664.104 9363.3309 7411.3748 4443.4103 4243.3565 7287.4872 7309.897 3635.4539 133317.4423 10629.7784 8747.4334 3098.4367 3098.4367 5764.6946 14202.6342 10073.0704 8294.0238 10541.1757 11650.7494 3789.5641 4487.3503 12756.626 3321.2753 19778.9238 10041.4002 11615.4171 4804.6232 6086.0617 6612.598 5537.4844 13348.6538 380736720 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8351.6281 9080.7079 10800.5262 9222.9753 4135.7611 2033.266 3583.3359 13879.7552 210676.6537 3736.0154 4894.5711 4894.5711 75407.1487 7179.6528 4623.4244 2346.843 9012.9976 5427.3311 9585.4109 454082.8015 9179.6483 7958.4627 2955.1453 4881.8014 8483.0814 2505.903 110283122 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 31196.7179 8851.3074 271014.2872 9048.6021 48250.4315 6799.4148 7877.5861 17665.7794 20057.8797 13160.71 151262.1693 11570.8336 9757.9276 17731.5718 13261.6325 13261.6325 16202.7295 21364.3062 13332.2771 10716.5814 16375.82 18141.2791 22982.1624 40546.9455 39074.0621 11623.7185 56988.5793 23081.2105 32932.176 13530.7218 23438.8837 10172.0316 11949.6009 19794.8038 339411461 ara Carbon Cycling Carbon degradation Hemicellulose Spirochaeta thermophila DSM 6578 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 14374.9032 12876.4598 6677.8052 9770.9685 4626.4945 5273.1327 6651.9639 9389.9269 6938.7958 5761.9187 123314.4408 8611.2062 10364.4678 5339.3164 5705.8874 5705.8874 7293.6291 16140.5981 8253.0781 10037.0818 14883.2753 17507.8734 5515.847 7439.2186 13438.7005 3986.405 18121.426 11809.4476 13710.8421 5336.548 9655.1757 8671.2561 9479.1997 17091.6255 124260751 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7268.0531 5274.9856 4731.142 11754.7904 4694.0001 2417.2949 5338.8544 229380120 FBPase Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8036.8497 9360.8981 3639.0004 6620.5623 2287.9742 4595.0501 5302.6606 5754.4983 93410.9165 13937.4658 8406.1186 5104.8287 3875.9266 3875.9266 4077.4996 11943.3399 6438.7477 10351.2654 6550.1833 4864.6733 4700.1412 3848.1754 9632.2891 4562.7751 15312.7053 8458.4149 8874.0614 6482.5564 7690.8866 4092.778 7197.5705 354960423 pme Carbon Cycling Carbon degradation Pectin Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 7507.5307 4734.8488 7320.9355 5916.6928 4026.7919 2906.1057 3761.0365 8068.3222 30164.9371 109670.393 10339.4208 6737.2301 3349.9542 3349.9542 4485.9635 13585.2212 8714.7316 6095.5159 7437.7759 12386.8311 4991.3099 3623.9876 11010.9735 3233.8195 15142.6894 5197.5158 8332.0219 5103.3199 4763.4489 5835.0929 4638.2368 9998.7197 119225904 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4440.2775 29650.5307 26466.0242 6842.405 3061.2612 51459.7119 4153.2669 2837.5432 181548.5408 3400.3158 5985.6025 2975.2883 2975.2883 3264.7899 10265.6114 6504.8481 4724.4246 4411.7782 4709.8684 10470.2357 2972.7394 12819.306 9041.5327 12013.7596 2237.1767 5996.6507 7383.3548 7897.6304 371958101 phytase Phosphorus Phytic acid hydrolysis NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 120277.6323 25484.5038 13435.8077 29251.9 8938.2675 6462.721 13700.0075 67377.9843 20861.7892 67397.095 25674.6718 354419.4365 19714.6189 27978.0466 52749.1772 28425.7257 28425.7257 13333.3793 51563.6922 21718.6994 37225.5262 32919.618 28049.466 12882.8672 14804.9259 19097.2287 13540.6573 390435.766 8935.9146 32408.4973 10986.1929 20134.207 45994.4445 6376.4169 24571.8005 289711748 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tuberculosis GM 1503 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 15063.947 53024.1291 13406.2151 38314.1483 5531.8083 34544.0167 29563.756 19130.2227 15903.9018 17212.1077 15529.1456 618924.0545 29728.2012 20594.8725 67013.6925 49558.9705 49558.9705 10069.9941 46240.0749 16286.8839 70331.4305 18754.7382 10087.1651 42620.9145 19183.1166 19718.1858 25721.9873 48679.1068 27494.9757 25272.2322 14103.9034 24693.3516 20440.3129 44089.7228 157612.8143 70991507 pcpe Organic Remediation Herbicides related compound NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 6096.079 4959.2278 7944.9833 7030.2664 3041.7013 3041.7013 6449.916 35351.9771 2174.8435 157285316 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44426.5971 91975.8323 14402.0693 12278.8627 26315.5928 17485.4839 11207.015 22647.2315 139876.3652 32423.0873 612159.9879 28282.3092 53087.1947 20678.1029 74292.9201 74292.9201 18368.4527 39971.9978 22206.8669 22676.1893 45004.8519 27469.6683 25632.3767 26076.9492 26659.7051 20622.2438 63665.0512 44213.4581 23447.8193 29129.1574 31132.4878 22938.1202 18986.8269 47698.897 195537614 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9225.0456 5540.6285 8448.9038 8468.8425 7710.7193 6030.8424 5372.8145 9546.31 9252.443 4809.4894 235336.8516 8947.5778 6127.7409 11556.4166 5136.5274 5136.5274 8060.1043 17163.4107 9984.3544 11347.1392 12902.847 14689.1104 5805.1843 6543.4804 16129.4742 5170.7243 21131.511 11042.0497 14739.9699 7117.7246 6490.5179 8023.6659 7387.8676 19308.0185 330688047 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 24134.1617 10318.2817 9854.157 14570.8125 6388.6084 24208.1882 19209.1366 8167.7678 8388.6892 6398.7083 68609.2299 8643.8378 22718.5955 11604.2997 43966.4422 43966.4422 19830.5274 19111.3291 12243.9978 5097.2634 8606.3633 9332.6765 4753.6303 8542.0349 19237.2374 5870.4534 18909.6389 12221.5795 16442.9972 4394.9997 8211.9626 8152.7276 10144.867 13334.2218 292663423 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 5568.1429 4852.0297 3967.6404 5705.0952 19756.0268 2381.4183 66687.8666 19168.4055 4065.1935 81659.0145 4579.6649 10339.0951 3561.2088 16720.7211 6273.1654 4760.1448 3517.4105 2708.347 29240.0935 3492.0527 23067.3122 5735.7301 7557.8651 4290.0643 3667.0191 5338.5251 13958.468 121606838 terc Metal Homeostasis Tellurium Detoxification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 11609.6186 11997.3181 14706.5658 11339.3119 23758.6443 11356.1324 3207.6119 3455.0684 15130.8928 12871.0588 13235.3007 249802.9367 8904.7897 9701.7207 19278.8967 5450.1196 5450.1196 5282.4123 57026.1945 11191.8424 8657.4095 15389.0634 17384.4682 5379.8366 4777.9205 14463.3487 10924.5103 19904.2193 11813.881 17853.6764 4363.762 9042.9183 15088.9726 7992.6902 15149.1839 91680994 terc Metal Homeostasis Tellurium Detoxification Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9453.3685 6802.4686 6270.7235 5946.9358 3022.0121 6425.3582 9035.5496 7226.0462 91480.8703 47949.6386 11925.0304 4477.7457 4477.7457 7076.9025 9122.6318 6296.4141 13046.8436 19635.703 13009.8898 7669.0879 6993.5763 6187.1001 5821.6845 16996.1174 11661.4539 19767.1984 5451.2513 7764.866 7957.454 14251.5841 17678.824 269828740 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 143659.4443 44094.0288 140814.7826 58486.9776 28139.0042 27684.4773 264033.2074 315503.7433 200833.6906 130868.7366 201075.3861 97569.2888 2780346.4076 418544.7014 288609.0515 704349.4269 120646.2997 120646.2997 77582.5508 166955.7563 94763.1194 445093.5583 165205.9425 169084.9148 85488.4857 100117.0536 102553.5417 114113.5954 281627.5086 171214.1524 132107.9621 81806.4777 154376.0457 134113.8379 69136.4101 397706.2137 1172165 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 5913.825 4965.7855 10406.9671 4036.9153 3071.329 4555.0426 3740.8491 7303.6636 5079.6594 5739.2002 3571.0747 2414.4053 2980.6036 6513.2749 9967.982 7855.5343 8374.1076 6013.0843 2309.1743 6758.3265 3729.3203 2854.4251 379656854 mcra Carbon Cycling Methane Methanogenesis uncultured Methanobacterium sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 16785.5761 12283.8984 38086.9631 11657.8521 9156.4639 23083.1024 15906.5558 14933.1939 18936.3838 19050.6567 8868.3632 494225.1931 23299.4226 24061.9968 23291.1548 17708.8657 17708.8657 13938.8994 25785.3942 22317.5716 22936.4602 22239.7987 35594.4523 9441.9056 11537.8853 28687.6763 35154.0963 38919.6269 22035.204 24182.9252 13867.4111 13080.8171 14146.5175 12899.6685 32771.6192 27379080 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 23166.3068 5624.5995 4687.621 2995.2361 5226.57 58475.6716 2466.7868 8753.3005 3648.9804 3648.9804 3189.3951 8568.2815 4519.274 6645.4884 12870.3558 6414.5963 2873.741 6563.9435 59883.9966 3713.1524 9659.2547 8539.9751 4179.4132 3299.1295 5367.3995 4564.1107 27985.0598 116804542 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 17714.1524 23319.3808 1867146.7111 16346.8701 22415.5805 11597.1881 33646.5216 23941.008 24418.6504 337761.2855 15939.8532 19971.4844 33915.4172 29313.5992 29313.5992 9077.5997 32217.6448 30259.7647 12668.7565 25134.7896 104079.2937 10713.6689 16065.8791 15206.9494 10981.6294 74045.3588 34335.6069 20821.9486 12960.6877 17207.1581 28826.1994 15888.2398 46822.8845 26278842 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 96171.1963 12612.8433 9710.4296 20234.8851 5128.1223 16075.488 2800.1374 8756.6367 72428.9034 27036.8855 131723.7902 15669.5786 21743.3788 20859.5008 15523.4222 15523.4222 5458.6083 32806.9346 12481.6134 65179.9046 31517.095 36845.2896 12859.1752 10743.1325 48789.6872 12072.6205 58252.8165 18150.2524 28339.5714 6025.713 26811.175 28045.5022 37536.6677 23469.6486 297616336 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Syntrophothermus lipocalidus DSM 12680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophothermus;species:Syntrophothermus lipocalidus; 4010.4871 13491.819 2615.8509 3018.3034 4457.8556 7538.382 6781.3748 5321.7569 104175.6745 5365.249 3575.8073 3575.8073 11848.078 12461.6164 4946.9192 56902.3112 360927.7876 8373.8433 3528.4329 9484.8605 5427.4623 5018.2319 15495.2239 8033.8273 12473.3819 2311.5149 7727.4607 8082.683 3459.2917 6400.8615 192289978 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4511.5541 43102.6363 3300.1545 7174.4798 12856.5553 2950.4137 3959.8556 226718503 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 5040.1325 5856.2787 8150.9793 13211.4729 4632.5608 6093.6928 2779.1082 3580.9638 5271.1078 87583.6898 5098.5901 4418.7936 4441.3906 5955.7103 5955.7103 3453.1884 8786.7163 5446.2188 7471.5675 9614.9341 7881.2562 2432.988 4157.8622 7601.6268 3986.6119 12868.3082 6240.928 8985.6009 4944.1461 3314.9771 4985.6499 4440.4098 16548.0795 262196703 ppx Phosphorus Polyphosphate degradation NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 55821.1766 6558.173 6580.9727 6870.1523 264389.2446 69427.9309 2844.9144 6934.5544 11404.0514 15992.9219 177141.3011 10763.975 11327.4788 8836.4732 3583.1484 3583.1484 8775.8035 11056.9836 7808.206 13869.5464 21824.5001 383836.1602 8194.5401 7178.9229 12704.8765 4775.7834 19311.31 6540.9852 159690.094 4737.548 22021.6702 14382.2462 6482.414 14342.1763 206576922 nasa Nitrogen Assimilatory N reduction NA Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 831065.8395 11275.7618 22486.0502 42398.7272 18908.9083 15557.7254 5192.0323 5511.5817 12761.342 6740.2285 109415.3794 8382.5339 8535.269 7948.7597 6925.7879 6925.7879 13742.6249 32405.2381 8722.8274 6357.0678 11425.0973 8849.3808 4538.8683 10037.3658 16413.5473 12217.6232 25588.7846 9530.1109 20786.6134 15969.4803 9410.7583 27962.5333 7284.8265 6675.779 39997730 amyA Carbon Cycling Carbon degradation Starch Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 5463.8044 11275.3221 2655.2808 4109.3145 6907.9475 6916.3701 138967.0971 6785.9253 3919.0375 7116.3779 4628.6672 4628.6672 4205.7687 8972.0808 6920.9568 17999.9153 7814.3276 4105.7872 3828.3949 10412.8758 12873.2239 8683.869 8873.6291 3727.3713 5381.6521 4916.8415 9613.3049 170026538 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8381.8481 5466.7812 7725.1778 28770.862 3723.3053 7791.5236 3573.7569 7504.3156 13119.857 2698.7383 2698.7383 3145.7205 14846.1959 7198.201 23591.7635 5084.582 10814.2375 17283.6157 6434.4641 7748.8143 2734.8824 10399.7222 3638.2912 6750.9555 1663.3342 6923.515 7932.8931 3005.6143 15404.5072 118469676 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 36052.9593 6924.2032 5414.9044 30954.1435 18918.719 16864.6153 16966.8212 7857.6703 12231.654 15608.1025 238148.8542 7707.3676 23117.5958 14991.8209 9723.1411 9723.1411 6073.7915 8957.7427 10226.1586 5193.4081 5008.1838 2439.4778 9372.6291 37511.7269 5977.9241 22684.0901 21933.5032 13429.363 6120.9762 29148.747 5336.8399 3958.28 344210020 urec Nitrogen Ammonification NA Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 5822.3657 2023.3927 4651.7039 4349.2066 2367.8293 3315.0612 2228.2676 2228.2676 3349.0926 7297.597 3673.9124 5578.4054 7357.5808 4721.7827 2758.1213 5838.0142 9166.76 5510.4784 6707.9524 2581.9323 3013.3136 3435.0648 4999.9611 359303685 rubisco Carbon Cycling Carbon fixation Calvin cycle Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 17334.2186 8842.8942 6103.2662 7320.4964 6835.2731 10612.217 10150.5001 7427.0385 15894.649 9861.9437 151764.8187 7071.4623 238359.838 8923.1432 6253.9572 6253.9572 10910.1487 17143.4043 9776.8403 20883.9702 63324.6544 35991.1396 7450.0502 10458.5392 11651.0814 10284.7341 25901.4177 9560.2954 15007.3035 7634.6301 12115.9163 17177.7907 7196.1225 51873.5043 83576658 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 36301.9796 12208.4312 14680.3046 9186.2524 32220.3605 6821.6347 4770.2558 18733.8062 16050.8743 17004.5493 17274.4691 16275.4353 633159.6053 14751.0949 22682.1876 24510.7179 28929.4919 28929.4919 31251.6505 41192.8377 24486.9353 51578.2759 114913.1742 21755.4893 10338.5926 14853.8946 21065.6662 53361.7813 41008.247 16330.1935 46249.9693 16864.0774 15997.1782 19418.6382 10345.25 18954.8658 407698024 alkk Organic Remediation Others NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 66355.4726 110149.7528 14448.9502 51918.3545 7045.6855 22551.035 23110.3973 16683.3146 26218.2207 31009.872 2046326.5236 24793.6272 14657.1737 39841.017 36258.4178 36258.4178 65612.001 40882.6729 27889.4857 38248.7487 19666.1877 23440.7377 15423.2841 42773.0666 24075.9314 35404.7802 122521.5843 46622.0508 37806.9753 26079.5243 24665.7724 28817.8628 14263.5518 25377.2427 388011996 amyA Carbon Cycling Carbon degradation Starch Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 6998.3686 3194.9996 3186.2382 5938.4034 5518.061 3257.1078 5303.8 6291.5976 2909.4713 2909.4713 3827.4505 9664.3411 5698.1314 8928.0651 13287.4941 2931.8018 12292.6469 5777.3117 11534.18 9609.1666 9068.8663 3218.0042 4253.1276 7707.2079 149913978 urec Nitrogen Ammonification NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7996.8716 1878.3276 30525486 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6884.497 5684.0936 4748.4826 18213.8383 9684.4634 3441.3207 8737.571 4042.4341 2919.5798 365153123 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter sp. 10_1_50 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 45467.6525 14388.5857 30194.8343 56470.1247 78011.4436 7925.5637 37874.8821 622849.4991 31611.3038 33682.6063 43438.9619 74524.1554 763420.5407 52668.3449 51934.467 97765.5577 26945.0506 26945.0506 130298.399 44909.5437 33324.6913 395556.3259 52574.1558 132125.0078 24274.5262 22693.1904 42230.7865 37168.1952 111100.4091 55991.6369 51001.4671 24916.3799 20550.8992 37662.9021 27296.8322 86755.2505 306517664 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8370.5632 15323.1435 6236.7059 12776.3483 93515.1956 14708.0999 165324.5327 7125.336 16864.8803 12959.5834 12959.5834 16155.1061 9725.1515 60626.3718 9718.9462 6547.4661 7351.7366 8455.179 7700.2277 14564.9183 13673.703 7794.2741 16314.8766 5963.2639 4202.0925 11872.2888 3889.9297 6059.8532 119386860 soxY Sulfur Sulfur Oxidation NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 15440.2252 24162.9616 11962.7308 6827.6379 2633.8913 7879.3263 9612.7044 14071.4753 80523.4709 16475.121 139480.0872 9209.5741 11791.0865 5603.8358 14412.5513 14412.5513 65269.1534 36747.2243 10211.0955 7432.42 63741.0625 9633.3224 15472.2543 8935.4425 13656.5098 11473.934 27481.1167 18365.6054 18457.9669 44066.4967 23069.1173 15713.6778 7623.0846 82514.8445 239736198 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Gibberella sp. F75 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium; 17408.7528 3633.5183 3361.7918 6208.1923 4802.3265 75353.6019 5699.3263 4286.2337 2190.5435 2190.5435 4289.6004 9052.4097 5660.4764 3946.2939 5816.0782 5523.663 3440.8336 2845.8497 6784.6647 2173.5099 5272.5794 5776.9303 2209.7038 3516.1912 4372.2706 2660.5243 334141075 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 10960.047 2907.5994 2465.1649 2710.5892 11906.5138 4671.2181 65374.2051 3292.7342 4172.0264 4172.0264 15804.1527 3253.964 6722.3444 3408.9565 3708.6327 6881.6549 5866.4439 15222.0283 40159.1692 13786.9678 1965.9584 6032.4147 14863.2381 306921846 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 17645.3276 9806.0247 32092.6771 5216.0239 5578.4767 14020.3024 45772.8431 98584.1601 7981.1088 4611.6272 11118.0197 2787.1763 2787.1763 5311.9836 35676.8077 5644.9735 9622.051 6710.7794 5875.751 21692.8698 5513.6991 8117.993 17347.3296 13917.1162 10996.1332 13106.669 4378.9995 5612.3862 9282.2981 10170.1893 7989.7477 224521829 amyA Carbon Cycling Carbon degradation Starch Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 60786.759 58200.319 66093.5181 130232.814 195199.9112 9412.4521 11898.8635 76478.4367 31315.4352 49192.1446 39845.5179 34955.3514 514630.3486 35177.8358 49373.1249 64021.6264 58989.8067 58989.8067 45180.3933 100061.7961 37920.1835 37560.9281 71323.5776 51029.4834 51426.2327 56234.4013 53482.0929 31656.9898 146329.602 48877.067 75445.2568 34801.3526 80433.7791 62883.6541 33764.4078 85600.5113 73539976 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 17950.7298 12064.8357 16452.3288 6203.9405 7646.3451 5653.7957 6234.7336 7146.4978 7359.2447 3357.595 124783.6472 4256.0445 11707.5776 7145.3894 7078.8152 7078.8152 4254.5612 11660.3952 5421.6348 4727.3457 8624.0755 7846.6856 4761.4571 6287.3927 12006.0682 7089.4093 29103.0228 9913.3689 15037.189 8031.467 7949.6373 9193.9998 6031.1191 7264.1018 219676486 mdld Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3999.3071 123733.7546 153075.8276 6935.2928 6239.3153 3419.3089 8608.3755 8071.3545 4400.6925 7909.0299 3332.2901 7585.539 398890044 pcag Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4315.1767 16756.6841 4522.6328 3391.4957 4883.0098 10409.0867 3606.5137 113991.75 6234.3029 4892.4155 3680.1948 10043.4995 10511.918 26135.6556 636597.5237 5829.2615 4274.9651 4071.9717 8427.6747 6364.7402 12254.4594 5873.9796 8890.2896 5316.2677 4924.5939 4565.4759 4845.8776 5579.1221 336100293 FBPase Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 29630.7002 11273.6815 17310.4364 10965.9441 34156.0169 16810.1857 13663.2681 22753.343 19167.8674 24293.0264 26477.4313 46989.3707 801769.821 28286.4173 38540.1368 31049.7767 25917.032 25917.032 22052.913 62189.6432 36400.5523 111985.2684 56762.9094 57519.8394 22696.5669 41025.3012 39905.4904 49883.4996 92215.1338 72499.25 44033.9098 23631.9296 27565.9557 51763.4002 72594.6171 42330.1323 91784304 mer Metal Homeostasis Mercury Detoxification Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 30947.0072 14707.8459 110690.772 118750.204 32207.8606 18233.7409 32655.5087 14774.3114 28725.7346 143753.1919 50818.2658 477075.7219 40237.9328 84967.3396 53992.7808 61879.6943 61879.6943 29421.2708 50056.0384 95625.0241 70644.5428 55972.8938 20298.864 23748.8369 84583.5113 39629.8361 62628.1145 717867.5802 38678.7718 112303.5119 39374.917 31812.4159 61741.2747 23643.2735 76219.8798 220717762 pcag Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 264919.4721 41326.9693 22684.202 9165.3037 12360.9794 50922.8762 127607.2747 120151.3622 188935.9011 90322.8611 123959.1408 859335.0151 93124.4211 109350.5751 101298.1752 126600.3263 126600.3263 70258.7461 131496.9938 76478.9595 70286.7137 159751.3566 49724.8865 77787.9282 87781.5914 50783.7067 63190.0939 187110.3086 56900.0936 149948.8371 47854.4546 62484.2453 97416.0099 55179.4174 89686.6746 317055051 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 23365.6484 11778.5195 15937.8024 8692.2129 9707.8918 17663.2169 9449.936 14063.3436 15952.457 7829.7378 299459.5097 15473.1151 21792.6441 7181.3205 8062.2276 8062.2276 44735.7253 20814.907 16729.9335 35923.8094 20703.7514 18067.1582 7789.2988 8211.706 19247.3806 8214.566 71913.7689 14952.2785 22091.4352 8690.8594 12529.1935 10766.3782 12353.5023 24582.6348 386856258 amyA Carbon Cycling Carbon degradation Starch Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 3777.6201 3980.3956 6856.2187 17525.2979 4417.2461 6628.065 69088.4901 54601.8085 5145.2348 11357.0525 4432.0084 4432.0084 8404.6805 6394.3828 12154.8037 4834.3138 7605.1242 2146.0529 50564.5555 4188.8051 64638.6599 9358.1257 7683.8133 4416.2714 4971.7384 5020.1042 3449.1548 6936.914 89473604 aoxb Metal Homeostasis Arsenic Detoxification arsenite-oxidising beta proteobacterium NT-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 10156.1706 5949.5764 8206.0987 2811.557 4756.7323 3177.4053 5369.4091 6522.8963 2655.1773 135046.6372 9125.5426 6595.1878 3865.422 3865.422 4391.5995 11552.3375 7309.5475 5431.0959 6867.1959 7474.0271 3519.3632 3861.9974 9170.0458 3398.9906 29226.7324 4414.7277 9715.0212 4337.6361 4474.7097 4650.3048 4377.3858 7747.4555 367470355 chnb Organic Remediation Other Hydrocarbons NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 59150.4917 377730.5384 10167.7227 40045.3745 7582.7711 13301.5834 11793.0894 143937.3705 24573.3241 203806.1064 37492.39 298681.9083 50631.1694 30120.7213 24860.2998 20418.9819 20418.9819 13500.6759 56967.3146 19633.7744 16598.3774 38589.1457 21152.7596 19716.7744 20105.0494 27800.3513 53904.1664 63456.8841 41638.8235 57122.6298 18074.6785 19864.9528 24372.3918 26765.5796 21547.31 315001610 aoxb Metal Homeostasis Arsenic Detoxification uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 4328.6777 8995.3401 10143.3027 15004.9523 14263.2427 4108.6393 33285.5102 7142.4921 6680.5535 4456.4777 241573.4564 12400.3568 160007.3043 736750.2885 13049.9138 13049.9138 12820.7706 10361.1463 12349.2175 359337.3212 5004.1175 9607.8802 17002.1711 4682.3993 16009.1497 13032.0032 15104.7943 31129.9424 6309.3466 8606.918 2690.1033 5785.1968 386825791 poba Organic Remediation Aromatics Aromatic carboxylic acid Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 358101.4302 31256.6883 14605.7116 39772.8259 16859.4729 14753.4833 13569.9725 21672.7656 23896.7715 14491.8833 14515.788 246888.3127 36031.5612 20906.2485 35205.4177 31465.2169 31465.2169 8608.9698 103968.1277 10294.9522 10456.4242 65434.5009 14146.858 9619.9919 28965.2758 23773.9981 39078.6697 56998.4735 24832.2129 36057.2548 21468.2188 20900.518 24745.5721 7293.4705 23401.1736 317465733 ara Carbon Cycling Carbon degradation Hemicellulose Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 6379.7548 6188.7285 6609.5819 6402.8618 2882.5942 3696.8702 8325.4042 3306.909 210699.7815 4208.2309 7643.8171 3578.9176 3578.9176 5744.7147 7599.2211 7330.5627 9125.7865 10089.738 5797.9646 3272.4707 3869.0597 9279.4725 6331.9534 9374.2791 10004.1738 8771.1953 4328.2336 4786.2576 5385.9357 5350.1626 6795.4753 149120191 soxY Sulfur Sulfur Oxidation NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 119407.5088 17272.3363 86347.9274 1159917.0207 45061.8372 13618.2321 26309.4989 47690.2984 49197.3807 88642.2723 80325.5484 66175.1058 1008424.0217 45614.2148 59467.2464 105565.951 45636.0482 45636.0482 32743.6008 78863.1177 37338.0125 51682.7418 190707.6769 78812.8583 39543.3762 36665.1705 40561.3617 50259.1044 155158.5773 33691.7801 64894.6613 47451.9732 44483.3603 59081.1428 50395.8681 81086.7826 119374770 arsc Metal Homeostasis Arsenic Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 147996.9786 49645.5436 8140.5379 63945.6565 29607.6424 153616.8253 60548.2768 33734.8953 50508.9365 106128.5529 134200.9131 1141593.0426 59101.9349 78038.2793 74894.2861 83925.4493 83925.4493 36769.5308 102772.0627 74330.2443 42297.6857 95413.8612 46654.1849 535017.8664 136583.4818 69368.6364 68368.0193 321588.327 115824.567 132395.4284 42903.8122 96191.787 64418.8999 92700.0045 50615.0485 221534135 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 10647.0487 6319.8745 4562.0604 2766.8172 4725.4696 3588.8854 4472.5332 97785.4704 5548.2314 5221.213 2848.23 2848.23 2933.6749 9658.3812 6459.4933 6200.0778 6047.8626 8802.6783 3270.7463 2571.7485 13872.674 3197.5292 7411.7654 3639.9029 6513.4851 3761.3448 3699.6678 3598.337 3160.1481 5192.614 359719175 amyA Carbon Cycling Carbon degradation Starch Geobacillus caldoxylosilyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 13310.0335 9519.2026 4110.5332 74093.4315 130534.7352 18523.9169 10178.1308 5251.5265 19237.4747 13788.0895 52967.9043 132388.3591 19339.6563 26680.5224 20957.9014 8529.293 8529.293 9931.6131 20252.5576 10912.3091 16590.4584 49846.0584 10854.0806 5203.3002 11695.7186 46864.8231 6752.0562 54652.7133 11300.2427 14695.3342 13253.1453 13386.3841 18548.8614 23645.6116 14950.455 164455992 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 15329.3707 13682.7433 6026.5263 18205.4636 11205.1324 6494.7477 11737.1143 11097.1539 11976.1852 6511.7519 300002.2855 13473.3991 11256.7591 5184.5806 7385.5086 7385.5086 9053.1285 18153.9905 12057.1596 14460.8559 11316.392 11720.2916 5692.3912 11019.4391 18686.0394 6189.6908 78870.5191 18163.9741 21003.9016 11071.4881 9428.3403 11822.755 39759.9061 15924.1575 377532791 amyA Carbon Cycling Carbon degradation Starch Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 17618.8976 4738.2039 5555.9676 5633.1504 13635.4677 5617.9088 10133.8783 6443.242 105463.5849 24896.861 7413.403 13267.4982 7041.7903 7041.7903 4652.7755 14422.8169 6226.4234 12031.2799 8028.2128 13083.4043 5893.2965 6641.6616 8019.3533 10354.397 28979.3502 4541.5526 10908.768 2251.8622 8793.4936 12941.1199 4452.4191 15542.4455 326544208 urec Nitrogen Ammonification NA Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 14090.1016 12105.328 19335.1839 26151.1773 9797.0584 179582.2215 12621.9074 8976.5517 9450.2685 13341.6483 7758.8186 430835.8997 16566.6251 18646.1223 22658.3892 11989.4538 11989.4538 9463.4553 17806.0076 17207.2812 14522.1897 13794.7086 16230.6675 5798.3101 7698.5895 25439.8936 8287.7531 117466.6067 15385.1349 24225.8492 10447.4069 8650.8245 23348.4784 6231.6552 14814.9967 110647952 amie Organic Remediation Aromatics Other aromatics Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 5450.7015 5983.5399 3039.4557 8349.8173 5121.3009 3958.8676 82482.5775 5118.8664 5756.2424 2616.9368 2616.9368 4572.4931 9112.9304 6511.7052 9192.8888 6246.1621 9600.5248 2888.1777 3549.2457 8642.0574 4081.1092 14841.9744 6299.7293 7083.9252 2894.9624 4455.8112 5397.1195 4090.9347 6197.2018 283784527 pme Carbon Cycling Carbon degradation Pectin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 23069.5564 18992.47 21308.3829 13056.6984 33857.8054 11577.4127 3580.1351 18947.8669 28135.2801 21226.4783 238112.6414 11706.6667 23888.6208 23394.9353 24344.5399 24344.5399 18202.5718 33617.9277 14276.9972 26623.8479 15736.9023 15576.693 11445.249 10110.9217 22466.0761 8042.0447 60898.7936 14725.8381 23878.122 15328.6156 12955.8474 16791.4128 10781.0929 15156.0356 300917131 xylj Organic Remediation Aromatics BTEX and related aromatics Escherichia coli MS 115-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 4950.3968 5101.0718 2564.1269 73706.8974 3965.548 7059.8958 5006.2984 8806.5775 12078.0267 4986.6494 2837.661 261286288 endochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4891.8084 11213.4628 10260.9625 2937.2398 2347.7618 10505.0157 3360.1614 7529.6002 2926.8407 91336.6704 7117.5941 6195.9524 7936.5996 7936.5996 7286.6684 6607.2151 6959.5338 5998.5107 6136.417 2646.5206 5810.0947 3329.7285 10772.9381 4356.5911 3260.5128 3741.4714 4643.8069 2732.3308 239807827 gdh Nitrogen Ammonification NA Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 10616.6759 7398.8708 5571.299 13533.622 21369.9969 7465.2311 13579.6188 41813.8585 10642.7563 11547.6727 14566.2323 11358.1126 59167.8972 5997.8971 7449.8477 5940.6846 5940.6846 6744.8891 19286.4974 9686.4338 27689.3878 13176.3676 10641.9947 5611.2615 8980.2486 362330.1931 7825.4888 30360.8287 14505.1491 26498.2768 6749.3076 15019.2409 15716.3081 7097.8144 7329.646 198266264 mer Metal Homeostasis Mercury Detoxification Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 12069.1505 9429.0778 9924.9293 9973.5238 4071.4443 9215.5788 9854.7697 7712.4335 3267.5089 114782.6118 7498.63875 16291.4955 9836.0437 6957.0842 6957.0842 4817.0386 20595.2767 9069.5201 12078.03275 16086.7263 25661.5325 6017.3046 5213.2144 10768.7132 12659.4153 7091.7589 8260.681 10674.4171 34227.1397 18994.8114 158422521 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 59986.9359 30019.7803 172520.5532 45897.4577 188366.924 340425.7714 56725.5334 44150.191 31636.0875 42988.26 48151.6627 37662.3163 1006531.802 41824.1075 381829.5753 71579.9201 45382.4672 45382.4672 35082.3005 61075.6945 42262.5631 33992.6472 55410.1258 71668.7822 22047.8913 28369.0559 56325.6057 27566.9352 83850.7506 77394.2211 63525.5717 26572.3538 45359.7514 30984.6528 19950.3655 37918.5752 334343526 tfth Organic Remediation Aromatics Chlorinated aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 13171.7626 16754.0808 4883.4872 7179.523 8018.6717 7029.0639 10106.9997 9425.9198 14448.4252 14950.8131 10971.8303 239109.4414 13676.1734 11189.5784 20363.6643 9631.7799 9631.7799 7510.4176 19051.5807 9258.7931 7415.0685 10887.9338 9648.4499 9076.6947 9065.4673 16315.4317 7400.9628 23946.0556 8812.726 17076.5906 7181.2069 12081.8929 13431.0555 8624.0557 18279.5527 29293450 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 70117.0783 32083.8428 21624.7707 86898.4739 37647.3614 18900.1818 29124.3777 23564.8561 24672.0655 29922.538 40585.5765 31251.1294 693863.0525 71335.3835 35362.5867 61898.4729 43851.9421 43851.9421 31134.3227 51938.6143 29579.5687 54760.9945 203525.9685 84859.8221 36126.2239 31199.1134 53181.189 33339.5594 176846.4205 39934.0014 70968.9686 17410.7662 29844.8695 47148.7207 23750.0478 76711.821 315412059 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 177054.3227 15724.983 107304.2454 139148.9006 157752.6693 2064784.6036 92356.7162 87829.7283 54359.1947 121876.2991 140834.5108 92913.7598 2738295.7648 188517.5561 149600.8399 157549.9006 129084.8514 129084.8514 150825.7619 110115.7186 82182.3043 216219.8787 225232.1888 57325.5189 136417.0899 95728.3872 70147.7893 100690.0627 146563.1677 128688.2704 404672.0356 106676.6779 64776.5616 75147.1605 179066.6014 180396.4727 190715232 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31241.0029 48008.5442 22896.9469 9091.3612 9595.5534 40032.2477 10580.5054 15407.942 18404.5723 25210.0723 45324.4237 203497.7133 73265.5565 11421.4965 12990.0928 13068.4805 13068.4805 6809.2585 32540.3775 13938.2871 75642.8226 23043.5345 61604.7119 15410.6946 16082.6332 17199.761 18727.88 39900.782 19396.874 23335.0856 19699.2052 18350.7674 22471.726 13951.2179 21455.677 363416334 B_lactamase_A Virulence Antibiotic resistance Degradation Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 38463.3726 10287.7754 22939.4263 64181.2283 8253.9014 16563.0771 20562.7497 7235.4906 13232.6789 13811.0843 28868.9371 376170.5349 21558.6295 16077.6434 15592.6631 13476.7915 13476.7915 17337.3953 22045.9911 16434.2525 21433.7945 12609.7302 21007.6794 7020.1966 11892.379 26672.2676 9808.4768 34207.08 19519.8573 32073.9885 15064.2472 11134.2075 13541.4705 9360.3927 20856.6189 347818421 ara Carbon Cycling Carbon degradation Hemicellulose Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 23858.2375 84440.7779 28403.8716 8708.8463 5492.9913 80096.7229 14125.4905 35021.8533 27094.6844 20326.8951 54365.5708 312151.0853 20290.086 28363.6132 30003.5531 61716.499 61716.499 14205.9852 30159.1626 25357.5798 350568.9057 38320.7997 19843.7987 22816.1206 14082.6455 25383.7039 16438.5788 185395.8515 39986.5518 31158.6075 15217.3273 21244.666 18772.1801 12096.5894 423305.0384 170027533 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3975.3567 4162.5778 5952.5787 11381.9771 2421.7734 95928.5551 3347.0577 7442.8725 10133.658 10133.658 2974.3109 7228.1863 4996.3736 8674.9555 3605.7365 4025.7695 5099.3686 12414.7869 3680.5004 8211.9946 3067.6627 2801.2409 3597.2142 292815637 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 123161.0867 10674.6959 76920.5761 7288.6161 169968.5285 8614.3857 16638.36 48637.4075 104897.1583 41996.0942 60263.2977 63697.5921 1179331.5127 242737.1917 47698.0452 46966.6105 77887.5694 77887.5694 30732.2735 134127.0703 18612.0264 44917.4329 81537.3978 29180.2514 39666.6791 45431.0022 62334.0728 40279.7432 162342.1633 31138.0123 51973.3443 43321.953 63344.8251 67741.7355 54859.3616 68945.7219 293326097 chitinase Carbon Cycling Carbon degradation Chitin Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 41509.8791 22000.7834 18446.4237 9510.7373 6083.1019 95625.4203 3194.2877 11805.3119 16069.39 15049.9177 244115.7408 41421.5664 16837.2875 28140.7655 11747.3456 11747.3456 8001.1148 46603.821 18818.5281 14152.5564 13027.5809 6625.4904 7758.1099 14823.0031 101568.4532 11052.5797 22035.3868 20685.5187 37285.7221 5853.8367 12212.1954 20254.9918 5700.6658 11384.8845 54025491 catb Organic Remediation Aromatics BTEX and related aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 20260.9111 2119809.2026 6085.5025 104761.8313 142921.8105 5457.5778 9956.9934 72525.0841 45185.0249 13260.6971 19915.9274 10452.5295 370558.0081 15720.589 16128.9448 21875.2615 34293.11 34293.11 39797.36 100824.4007 25444.5084 14226.8901 129953.7231 22415.204 165126.4642 19256.5942 44736.0231 86552.4929 69248.2064 54680.9874 35526.7455 15359.3241 25662.6742 27778.9403 15370.9641 105581.5612 150029013 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 78996.3353 22323.8833 66108.5697 130394.6534 132242.4977 37396.5051 77067.0616 64692.1668 56401.7537 87803.9751 82676.6035 53521.5563 2113618.9507 118964.2196 115000.082 264064.5541 72319.5972 72319.5972 49364.5847 107089.308 62296.6262 249168.7752 101317.1307 93837.3575 50423.5798 37268.6731 82895.5739 48155.758 174227.7424 61329.1868 82232.4093 41013.8806 52397.8594 55914.563 48124.7291 92212.7894 108802218 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 4859.7416 10577.5165 8858.957 16914.9754 3346.2743 11794.0507 4144.3263 5242.1645 7110.3341 3445.951 99330.4867 5954.8485 7648.9135 6627.2399 4720.2799 4720.2799 4613.3328 11768.0963 8323.7435 4289.2307 8913.9051 10182.1697 3574.5724 4916.2891 9241.4534 3312.8176 15444.0022 9190.5319 12050.7894 5705.8033 5524.6645 6201.281 15315.765 9896.2219 156529151 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 157215.2971 2210.2698 2917.6406 3379.015 20697.4051 67916.1281 5228.0762 4503.5441 3140.1545 3140.1545 7250.0897 6982.501 4420.8459 3654.713 4224.5916 4458.3095 2970.5671 12833.0299 7055.2921 8374.374 10459.6365 5269.6811 3344.9271 8056.2165 5084.5601 6847.2195 63029766 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5526.2382 7332.7865 16968.7582 6058.5889 6516.7257 7081.3165 2492.1814 121586.4408 5456.9437 4608.977 8073.4784 3752.6774 3752.6774 2960.9733 10530.8297 10415.1173 34862.8955 4802.1883 2645.1381 12815.2668 13506.7884 11891.5609 11252.9721 10293.2678 4201.9341 5293.877 7357.2084 258650523 atzb Organic Remediation Herbicides related compound NA Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 191307.2791 20218.0614 34257.5813 94895.5715 76792.9027 52079.2115 61532.3765 55583.648 40165.2869 51116.7155 62965.5396 83081.014 1321859.4264 127500.5635 57192.4865 71070.9777 106751.4052 106751.4052 39333.8128 86247.1584 46165.7542 56424.061 86745.023 88476.5754 34453.3552 32061.9209 67859.7529 30710.108 96493.8924 41258.0038 68427.2985 392954.7308 31844.2385 40814.5382 165583.4777 193399.902 389736473 ppx Phosphorus Polyphosphate degradation NA Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 176403.474 64621.2668 1088065.7322 232213.8856 1149821.8699 94201.2454 98891.6994 263853.0405 80495.2234 56674.1094 149610.3026 176546.806 2322567.7945 100544.7495 103670.9142 207003.8274 160773.5099 160773.5099 46786.2655 115584.458 53500.1699 151506.8808 84557.7239 66042.9409 35341.2694 50721.6918 277043.9823 37488.8991 171705.8544 374569.6485 113425.8659 30596.8172 64678.8171 41891.3918 27120.1171 167976.3709 148255077 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 167765.5073 55551.6021 99481.9631 127751.4233 38222.7798 62180.0459 89666.7043 54245.0796 89029.7299 102173.6476 88511.5709 2954975.3782 139181.0357 127608.9272 271438.1655 99249.4005 99249.4005 36619.573 123793.3048 77520.203 382641.0282 500604.44 55865.6754 52905.967 96395.7012 127329.4273 96506.5759 504387.2008 101534.6783 123696.3541 44830.5352 66706.8329 83939.4984 101814.3447 51918.8372 359424827 amyA Carbon Cycling Carbon degradation Starch Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 103526.0036 62556.8267 15942.6808 1342147.0238 25686.0254 17015.9916 11288.5364 26733.3203 10829.6984 61832.1001 32055.7898 96231.8126 1465945.0418 19230.434 44440.8127 65827.8619 58899.2509 58899.2509 42106.4735 71804.5573 26203.4339 56848.2886 66332.4395 125771.8844 17937.889 43456.7789 43666.0747 23707.0506 136088.135 24179.3946 55461.2643 57517.1643 43023.7861 31133.7516 47277.411 29052.7634 257388961 endochitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 68285.9371 25789.8442 7165.4021 10424.5968 13138.6682 18355.0794 13755.2379 24471.2062 31533.1066 32430.9137 310817.5873 20452.0929 12941.9531 34079.2808 16937.5963 16937.5963 11435.2831 34879.1825 80987.7822 35951.1899 29661.0146 16679.9429 12447.8278 32519.3125 37400.6591 32826.7381 63914.6652 27645.4719 34901.0895 60352.0261 28434.7722 41838.1086 17999.4013 50988.848 126641498 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 5458.277 4354.9267 3008.0247 2625.6639 3746.7272 3095.3715 60280.4339 3833.8982 4012.2369 2621.1914 7846.5577 6171.0382 4641.8624 8432.515 3243.217 2058.3333 5404.7127 3449.7375 3060.0867 339503543 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 87854.4743 23283.7448 57639.1713 24225.3017 10018.8735 24003.4259 30344.8468 36128.6698 40456.2507 29770.931 35198.724 1715385.1393 89568.8802 26457.6719 58017.5445 43806.4579 43806.4579 23672.2152 65694.8457 81613.7583 40154.1871 59216.0932 77871.2507 18296.1672 28926.5566 90354.4218 27618.7167 88221.6671 226714.9776 36520.8156 40266.4589 34906.3254 34522.8733 59821.8662 35356.2389 152997053 catb Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 11372.6121 14575.6357 5528.2564 11075.2476 40688.0644 9882.0854 23355.7815 6111.7811 10485.4531 16212.6548 7613.5201 224664.3536 28182.9006 16412.053 18917.9325 19963.3548 19963.3548 51635.5691 34979.3708 19705.4105 104383.6461 25926.426 20104.1982 11419.1655 32075.1756 20790.4234 11186.3948 91577.7319 15856.5222 25874.8754 9798.2977 11367.7294 16085.6669 11507.5307 27961.626 34498949 norb Nitrogen Denitrification NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 4619.6805 10572.8446 9540.4589 5321.8395 3502.2936 6452.6011 5372.1922 2400.1723 64661.6067 5509.7444 6977.6701 3277.6325 9376.557 5810.1865 3850.7484 4467.5608 7222.1779 2491.3226 11167.5569 6900.6268 7132.8471 2916.2068 3187.1986 3708.2385 3192.237 345013937 vgb Virulence Antibiotic resistance Degradation Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 15896.2732 9637.718 37645.5432 7368.0277 3372.0874 4823.4368 9460.0514 13752.1801 74668.7581 24030.7501 16072.0831 5752.2835 5752.2835 3400.7348 20473.0013 39989.3247 4874.5486 13595.9716 3272.2742 6983.2905 19009.9859 8954.8816 23195.8314 9314.2555 12734.5152 6039.9958 44891.1166 8678.9172 7130.8292 9174.7885 305413819 amyx Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 7450.6126 13965.6782 4661.5359 7024.9482 4417.3494 4024.4169 12837.0329 9561.3446 5990.3286 164400.6928 9320.6981 11699.6583 5760.0385 18240.4212 18240.4212 8317.8958 15550.7418 8741.6076 8133.4331 14184.9338 14576.4033 9375.8588 10730.4452 10984.6365 5856.405 21519.2881 4332.646 13763.9409 5252.3503 5836.9895 11854.3777 5186.5314 11507.0149 198252345 TIM Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 4474.9146 2166.0292 11832.801 29232.4198 5779.5777 4891.6345 9876.486 4450.0732 3146.6068 308051089 nrfa Nitrogen Dissimilatory N reduction NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 18461.9179 7674.3822 11242.873 6341.3493 12422.7188 10148.8356 4812.9518 10109.988 11740.3576 25616.8255 203529.8768 15890.2689 7582.4571 6331.1268 5588.6165 5588.6165 9156.3465 16723.0447 13332.8905 12115.7953 15087.2825 17445.3624 7864.9373 8296.1186 17939.7175 8083.2362 24370.7749 16692.5118 19034.567 7275.3507 11855.3928 14098.7342 17813.1267 18881.9493 50119278 alginase Carbon Cycling Carbon degradation Alginate Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 743220.0194 284365.9155 40598.4764 42625.1754 61701.0573 23344.9032 20982.3972 143185.2468 37266.0792 33444.4281 43680.6128 20597.6438 606841.2024 36328.1436 87549.1541 37258.5304 29512.8369 29512.8369 219078.8001 58402.4718 213899.2339 88906.9625 42294.18 179451.5497 23007.1285 25624.2321 55438.2148 87085.2506 67334.6315 34556.6565 52113.1093 23346.4024 50508.3968 31406.3734 95249.5012 43080.7427 78187923 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 4760.3448 12988.0174 102730.689 5337.4496 5337.4496 10477.2048 254888.9097 5805.9264 5071.4605 2043.2606 5983.145 169793464 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12945.302 392172.288 13080.8759 5919.1385 7720.6677 3838.3495 3677.0581 87516.019 5653.367 66407.6429 7753.7814 3424.8137 3424.8137 5085.9913 12931.0782 2482.927 2386.9092 12574.1956 21139.0636 2585.5197 3769.2668 15328.0406 2625.0294 2698.4195 4333.1598 44916507 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Diaporthe helianthi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Diaporthaceae;genus:Diaporthe; 203907.96 9402.4455 12965.7513 5986.2905 3862.601 10004.6601 6665.295 5759.0329 5353.5724 7144.4969 114557.6592 18962.1005 5559.4518 162688.005 8721.9324 8721.9324 5227.9051 7339.6763 6141.8708 7250.7985 12490.6138 11034.9646 4787.3764 7565.8485 17916.3466 38913.6678 23301.0114 8712.0492 26701.3674 8074.8668 10615.5571 6111.2 8912.8942 374986445 amyA Carbon Cycling Carbon degradation Starch Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 13579.7702 20240.0271 19254.8112 20795.9451 17132.1994 7349.8782 3260.6652 18606.014 17004.3929 6526.2557 154753.7837 9591.6689 19634.5483 56597.9807 11679.3824 11679.3824 6844.6518 17227.0973 10170.3093 7290.745 10690.0268 29972.3068 4499.8668 8346.0731 38031.6925 26485.1149 24865.75 14235.6725 98670.4424 11752.692 16157.5345 15539.4789 15191.7704 6778.303 373547273 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5387.4159 6315.6839 5769.6413 3064.1739 8371.3296 4036.3713 6451.8441 15782.5124 114806.2532 21056.2963 5981.8448 24784.5706 2951.1361 2951.1361 6576.4891 6034.1969 7657.8467 5332.0714 6551.9919 3144.5722 6083.8814 29003.7785 15841.2388 20808.7141 9672.9967 8023.4925 3634.4961 6241.9448 35121.8433 12879.4822 7483.827 255932209 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7229.7572 7265.6941 8899.3448 2664.9649 4306.4041 3652.6434 4931.5231 66394.8705 9465.6305 5023.6008 5478.9932 5478.9932 15562.9431 5073.8466 8364.8921 6802.1528 3394.2935 4330.488 5536.4187 7172.5651 11328.7236 7396.5822 7842.6325 2582.1844 16058.4263 10044.1719 2834.8803 4783.2059 85815566 nirs Nitrogen Denitrification NA Pseudomonas chloritidismutans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 64196.1186 11369.9245 8608.5196 12145.9872 5010.8828 10280.3196 7547.6265 47441.6785 168546.1971 10968.1907 7201.5472 5848.3806 5653.8142 5653.8142 5156.031 14009.7147 6424.3059 22463.1309 7385.3197 6201.0884 13456.7028 3096.3631 29599.0818 27808.9964 16753.9594 26921.0525 8868.1874 5079.8371 2811.9728 358635903 FBPase Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 11557.1662 6764.5594 4896.1785 6852.1196 6087.1527 2681.0802 6575.1414 113549.2195 8992.4505 204941.9732 12668.217 8764.5829 4975.2106 4975.2106 6053.4734 22204.5494 19620.1718 253376.6283 71361.1951 17514.3636 5365.6109 8895.699 11654.8148 5218.2971 26564.5156 11563.8191 15890.8671 6239.2134 15218.8778 28925.7178 4508.5964 26420.7789 399159714 tfda Organic Remediation Aromatics Chlorinated aromatics Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7289.9563 7942.0302 3752.7872 6243.0385 3186.5813 9186.0306 6370.7677 7337.378 104309.4946 5498.0828 4529.6497 4893.1625 5909.0741 5909.0741 5304.1642 15421.2905 8482.3925 129950.734 22277.3598 12806.1759 4531.8769 5000.3409 7252.3145 6689.1125 31763.4326 7737.1254 10260.4674 5861.3403 7715.9484 10113.7116 8775.5573 13955.7759 241362646 pgk Carbon Cycling Carbon fixation Calvin cycle Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 5518.372 9453.2964 22799.2331 8748.1653 3897.2803 33253.413 1960.3012 5212.2695 6263.8775 4077.3478 178250.5665 8882.5919 8043.9277 11039.6966 9144.357 9144.357 5941.7149 8247.358 8234.2015 3836.0425 4355.0627 11612.183 34592.708 10233.9172 13722.8002 4074.381 4282.8733 8161.0144 17583.3302 4842.2386 4486.9589 10145.1771 2530.3758 8185.3097 302540503 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 35629.4522 25652.6143 13140.3066 298722681 nagg Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 4383.6961 6185.5168 4736.1183 8277.9751 3830.5525 5105.9938 5325.0938 2710.5051 3498.0348 3527.8161 6354.9357 315503000 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 122926.5577 20206.9193 23655.5807 5065.4992 14751.8128 17824.1895 32159.6559 30255.8835 25123.2933 15999.802 407540.4152 168369.2262 42472.7726 25808.6252 23012.0061 23012.0061 22636.4173 47408.8621 415815.0095 58358.1593 80345.6056 38762.5071 14844.2848 61043.6229 26632.2214 20787.6988 177978.7385 25439.6073 79141.9965 19555.7298 73596.8597 71857.6463 39343.2358 49263.0668 45386199 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 37529.509 16234.4167 14978.7533 13091.7151 10547.0969 19906.9005 16474.9035 9995.8507 17281.4037 25393.1206 27826.5152 485093.2922 25882.4828 26674.2766 19573.9841 16735.6385 16735.6385 14791.6323 30437.9676 14436.5285 16673.4631 57540.5932 27509.7479 13143.377 22230.1872 29279.869 28516.167 46227.2899 23038.4898 32437.2392 15504.0047 27078.9122 15459.8182 19424.8457 30501.9949 320529875 amyA Carbon Cycling Carbon degradation Starch Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 165942.5612 101403.8745 588282.1998 310127.4703 289922.2039 46069.2629 309930.5661 98796.1889 114879.6131 176081.3023 228377.229 3439612.4084 154590.9838 274008.4019 175379.9239 134507.462 134507.462 149491.2829 183378.8365 537145.9501 80533.7238 274617.3237 61926.536 143770.1426 112413.2168 249162.4297 131716.6877 460810.8115 270081.1039 206881.0188 131379.2398 141534.0042 249537.5422 78088.5119 374502.931 28542643 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33858.3252 22608.5103 6962.6299 11308.1868 22008.5198 9417.9361 9189.1748 32561.8234 9207.1267 11391.3323 14805.7918 10173.3243 569678.6078 17158.6438 16522.0205 10062.8167 4623.9942 4623.9942 11366.9636 22859.125 13200.9564 23683.5149 22037.4749 12570.7827 9576.773 8250.6515 16839.824 12825.2294 31499.72 14859.0534 16142.158 13057.7222 11120.4661 16473.8437 8401.5487 15436.7852 285019789 pcag Organic Remediation Aromatics Other aromatics Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 28109.0576 12070.7585 9054.2619 5424.7897 15667.8688 15973.0958 28352.0928 13460.5613 23140.2055 26701.3171 112234.2564 11637.0477 109784.306 48145.5188 25712.4926 25712.4926 9257.6466 60412.8868 47136.0408 8598.5254 35960.3246 61784.7214 14133.6824 49717.8174 107806.5597 56920.4258 45215.035 13328.5452 23954.6636 11317.0033 27606.3492 16627.6119 54824.7007 29827.9838 126729151 arsc Metal Homeostasis Arsenic Detoxification Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 12244.5058 5849.5351 20130.2091 6401.9769 12892.1055 6366.3209 16690.1626 10237.7097 165604.1792 5667.0263 10725.9265 13715.8246 22924.7373 22924.7373 3949.3263 18649.2742 8890.976 7684.1085 17418.0255 27752.0656 7146.6222 6180.4582 9169.505 6679.6384 1194972.9709 13764.3384 11964.6545 6251.0599 11808.0754 11429.1708 4903.0634 10765.8043 167564754 phn Organic Remediation Herbicides related compound NA Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 52046.2951 14515.1638 88211.0214 11552.6904 31287.7794 22305.6023 13870.6276 37201.2943 26241.4671 51818.1285 29296.8651 40008.9511 425931.9599 36926.3945 109292.0645 76113.1669 57127.2662 57127.2662 23770.8659 64491.4669 21436.1578 59756.1695 1259127.7455 468302.4228 25433.0085 94398.7641 36199.9769 80460.7505 232232.3085 70794.3363 90163.5717 33646.7929 65097.1547 54705.8734 29838.1015 60569.0893 337748860 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5642.1902 4581.1736 3441.6785 2757.8842 11824.7142 12470.1573 70524.0768 18735.9116 2364.7644 2364.7644 2882.9118 12037.2867 4032.8325 10136.8189 3472.1432 3976.8624 7079.3481 5176.4644 17252.8749 12442.0823 8763.8716 3254.0588 9419.4927 48971.5955 6369.6086 9747.4516 298513196 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4624.8764 4183.8692 3627.011 5042.647 6117.4402 96303.8721 6667.0748 8936.8512 2352.7301 2352.7301 3579.1537 7779.2006 4735.7302 6981.3863 6919.1832 12176.9679 4515.3902 2596.7423 7431.0303 3650.9678 13475.0876 4692.5578 5715.0962 2493.9965 4093.3747 3474.4215 9504.6037 74053796 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 80936.8214 19591.5597 86389.8116 30318.8162 442247.24 17153.0111 42190.9938 35035.8221 42944.8536 62585.9323 36981.5564 48525.8989 626447.2429 81582.6809 152702.4789 33931.6424 45119.1515 45119.1515 48596.4033 57271.4752 31899.4356 45279.7385 77725.2486 110362.0084 33308.7545 37199.4768 63226.4153 59287.432 161139.1527 48880.4837 58299.8199 24102.9667 53730.4178 53483.7972 31752.6498 52665.0345 26278716 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6082.9296 3490.0225 4147.6327 4147.6327 184200301 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 14509.482 13879.1652 104413.6624 10319.7689 18070.0664 4745.3246 9788.8374 16502.3038 6869.4352 12587.8037 33539.252 125923.0215 20031.7545 8080.9524 28452.1277 7010.0355 7010.0355 10053.384 36567.3053 7544.2206 87775.9165 20336.333 10418.4682 6792.9888 14080.418 20940.4012 9210.8279 21627.8037 18148.6186 23308.0713 5420.1383 10651.1028 13406.3803 23895.452 8396.0473 1841418 Cl_peroxidase_fungi Organic Remediation Aromatics Other aromatics Drechslera biseptata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Drechslera; 24408.431 6624.1517 4801.2356 11913.5985 4794.3357 4460.8461 5387.5998 13139.4021 7667.7508 14885.5661 10672.7707 207955.1474 24636.8215 15341.6845 23583.176 14862.9687 14862.9687 33590.9685 18700.3019 8703.6761 38458.5202 12141.0982 23659.9401 15902.559 14684.6077 25888.6306 7971.6595 24285.4425 15978.2805 17914.5034 12949.0161 17501.5497 17982.1236 8449.2887 21222.5176 142054 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 38354.1155 121016.3533 72126.4245 19880.6236 4223.9951 49908.3639 3133.1844 314087.3287 4488.3587 4488.3587 7362.7457 3735.8742 2511.0641 18359.874 10200.3435 14093.7285 6819.3058 2841.0171 2075.0569 297559672 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 256955.6562 177359.0986 240199.4145 97922.5881 128335.0908 32191.851 434787.9641 181681.1037 124694.7541 150596.1369 182817.3157 112860.673 7678836.2193 148600.0488 210310.3922 575999.8874 235643.1049 235643.1049 110896.1038 180148.888 161549.4051 175985.8738 229616.3823 245081.84 129313.8783 108368.7343 417699.0515 240383.1946 659736.3154 357867.1651 196230.078 120653.3999 154959.2491 170912.1043 235889.3319 201575.1901 347736116 ara Carbon Cycling Carbon degradation Hemicellulose Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 26617.5738 30389.7416 382140.8951 23670.1557 2522324.3639 67917.5116 214936.4098 39871.9706 73341.8454 17825.5052 41199.7155 29136.2159 1060688.1077 78122.192 39604.7381 106693.2287 55745.7808 55745.7808 20285.7775 40748.8604 22050.0036 20421.2374 32820.127 49011.4282 23362.0618 24731.6233 44373.1053 12838.3635 45554.448 37563.499 53726.0741 22664.5114 31509.819 35332.1368 23849.7864 29378.7707 347750697 terc Metal Homeostasis Tellurium Detoxification Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 34526.7004 15484.2664 21865.7042 20229.5976 23840.7844 13368.45495 17745.6298 18562.07565 474024.16965 28552.88975 28783.40855 19177.1282 19177.1282 16963.70795 37407.1313 18244.7967 32277.7092 19656.8244 18099.2142 23457.5773 13285.70125 42601.6665 21274.52955 47442.31025 18415.9659 17411.0198 18552.79455 19000.3033 75704537 amyA Carbon Cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6365.4775 75113.0707 9724.0618 3610.1915 6086.2149 3366.4705 6907.8174 159154.6934 10077.3031 4816.1687 3203.5844 3203.5844 4084.9416 12390.6218 6533.7867 5581.64 8083.9695 6223.3334 3468.6617 8937.8898 8427.7242 5377.6251 12920.6964 6363.8333 7392.3577 3279.1281 9244.6837 4329.4498 5354.9343 6778.0101 335039265 amyA Carbon Cycling Carbon degradation Starch Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 5449.9496 2658.4252 3308.2557 3831.9262 3817.0997 7154.9108 7119.9028 4901.7567 9659.1305 8672.4173 2615.3566 3577.3312 6955.7693 2743.6966 9689.7259 5414.8075 7082.1514 3199.7843 4984.0066 3908.5464 3513.3496 5597.339 90440132 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 11674.1798 37916.3898 3360.6641 2753.4347 3208.2349 5869.6123 7951.5715 3486.2518 143242.5085 5317.5888 44063.4304 2177.7552 2177.7552 4766.9621 14659.0129 9151.5047 4713.7324 8182.9047 9582.4705 3441.0025 3712.2047 7515.8928 6373.4881 16046.6039 8717.3486 8389.8534 3951.3486 4587.1902 6219.5528 4652.2545 7575.337 381168639 arsc Metal Homeostasis Arsenic Detoxification Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 29692.8227 6046.5141 8180.7585 13699.1726 4508.4579 11307.122 3756.8301 18920.5052 16127.9114 5315.7296 173163.5998 6306.8436 17959.2901 9194.8567 6272.9919 6272.9919 6876.1345 14076.4494 7751.8579 25454.0638 12606.3794 6923.2223 3768.8821 6298.1263 13406.5852 5961.1145 27970.6313 8659.7539 15913.5611 6225.062 6873.2335 8631.6463 5050.5433 7806.287 223470335 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14509.806 4745.2086 11850.3953 8479.2342 10048.3923 10337.3085 2986.5659 12797.1042 15426.8343 19221.4813 147138.6922 10553.9802 11887.2043 14634.3386 7367.152 7367.152 10490.2447 18546.766 9886.7769 25162.0669 21000.9179 20932.7843 12291.8628 7347.3503 12021.1308 31608.5363 23868.6755 15913.2565 55269.5597 8544.2288 13458.9342 7991.8108 6798.8628 21457.2648 134098523 ppx Phosphorus Polyphosphate degradation NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 19942.0934 13939.5356 2639.2612 5870.0654 12127.5654 4404.5556 7647.2717 4579.3978 4742.2765 10594.0023 7287.0976 7287.0976 5085.7861 156884.3611 15420.0199 8091.8815 6975.5341 22455.3612 29179.2639 31074.4304 3158.4947 12810.9409 10628.3409 15487.2859 153006886 urec Nitrogen Ammonification NA Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 21290.3987 4955.7405 6538.5266 7463.8799 6937.3359 6425.9346 6796.0422 9984.4856 11706.0548 28696.9387 319030.4505 10927.7715 15807.7308 20797.6158 10984.5554 10984.5554 10280.4434 15448.6169 6206.4642 21237.9479 19273.4293 19753.964 29588.5425 7260.9688 10931.5903 7520.9962 147224.2006 5187.8365 28451.2349 4949.0602 7495.8948 13335.2362 6326.3779 13771.9321 330925558 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 10981.6656 7671.6526 15225.339 20963.09045 7302.5295 9334.2813 9862.0882 16801.9709 150774.07345 9288.93035 9406.6741 5786.6128 5786.6128 8251.3409 21300.8255 13357.2688 23787.6733 15221.1796 6182.4425 10943.95105 6440.5117 31467.3718 7128.1779 11633.941 7376.54065 7753.9951 21134.4306 5899.1072 16991.2293 317969431 bphF1 Organic Remediation Aromatics Polycyclic aromatics Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4074.3469 2422.1936 4964.9761 117866.0523 3961.7479 6101.8484 2489.2467 2489.2467 4637.0773 2910.8963 6646.2841 4585.1488 4091.9891 3740.3894 7291.4734 2142.7446 7506.8315 12352.9791 5044.7019 3003.2455 3901.5005 257221921 hzo Nitrogen Anammox NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 5266.8486 7126.8441 19816.7809 9335.3816 13767.6175 4116.5466 3491.3765 5848.0042 107336.4666 4701.4877 5157.3508 9616.7544 8712.4089 8712.4089 145351.3905 29551.4312 6029.2093 10540.3543 19731.4495 24922.6905 7518.2524 14821.8502 10196.787 11594.2527 2856.9897 68953.441 9621.5244 57976.6255 259346398 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 23974.9996 16225.1877 15842.8103 13909.7363 5562.2528 35435.4215 15039.7995 10268.6914 15121.0911 19134.5305 10967.9475 445681.8503 22823.4417 114441.364 14897.6625 6322.7875 6322.7875 12968.4916 36622.7976 37984.4834 21852.8127 25111.0405 24695.9297 10494.2755 11916.3218 26538.0991 31576.99 37338.2421 21332.3481 22526.3276 11822.4337 15459.0655 14000.0725 9634.2953 28040.23 327177910 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 15815.6399 5438.1233 4538.9102 27035.3347 8479.0068 20605.0292 15041.3817 5414.1071 14854.7634 19982.7727 31859.2873 372285.6399 13270.9628 20061.4256 13136.6587 20907.0082 20907.0082 25128.3197 90464.7221 13881.6309 76635.1512 15838.4379 36476.4753 8783.2806 18834.1654 37015.7838 29518.6264 93884.9559 32129.9401 53725.7512 35641.1455 32425.9793 42013.0555 8096.5762 14906.0313 120403007 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 11777.467 5560.5854 10716.381 13258.5027 7809.1957 5053.983 5921.3315 2970.5248 9927.4064 16750.251 59418.4602 165276.0509 9508.0543 15985.6597 8836.2542 8867.2353 8867.2353 13677.9192 25134.4582 17750.1387 26784.6516 7895.5278 8218.8144 10973.1988 12823.213 15756.9058 5080.2588 37081.4222 9508.5569 15921.4501 4885.4369 7866.6857 9546.2761 5267.7978 17521.0185 170945455 nagg Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora; 4595.3631 5429.2155 3029.4974 2758.4499 4410.1621 22771.834 7447.0448 10909.3871 5165.0386 5165.0386 11070.04 3876.4428 5070.2668 20158.9017 11944.3456 3032.8621 10590.407 12428.6615 6489.8854 4065.0174 3260.1066 4017.691 5611.619 357977351 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 13440.4068 7031.2574 4666.8054 7282.1153 4040.9542 8066.0925 8410.5544 4427.7422 179918.3423 10888.5334 24495.8494 6175.1745 2396.3149 2396.3149 6440.6298 14652.7498 36921.8419 19311.2471 12211.8649 9598.6861 4323.1151 4933.9996 11314.7358 4643.637 16791.4752 8568.1858 13450.6807 5266.3401 7966.5188 4522.357 9176.887 11740.3653 322834518 chitinase Carbon Cycling Carbon degradation Chitin Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 7104.3027 1678042.5212 10968.721 3361.1792 3869.2878 4723.9352 4297.4363 70101.1095 26397.2422 3599.1148 5039.7688 2130.4916 2130.4916 2899.2726 11485.453 8587.9589 82289.671 3702.4232 21370.52 2483.5231 2773.2584 9235.7126 7737.8947 6186.0727 3459.8304 4745.2547 2344.652 4601.4991 319742582 nirk Nitrogen Denitrification NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 42574.4861 15858.558 21685.168 66121.7409 7845.7907 38749.1231 38782.4519 25044.2497 33125.9816 24962.9795 21241.7959 569235.3197 108915.4256 28942.4803 30035.7376 22703.3763 22703.3763 17757.1024 46925.58 20904.6355 30869.1311 30913.6323 39418.3045 15721.6951 31241.3909 32112.8693 11762.5333 53861.7727 15658.6837 57096.4183 18642.4162 19328.1033 25894.9296 13267.5401 30896.0451 307941570 tehb Metal Homeostasis Tellurium Detoxification Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 7870.6266 10608.3357 2130.0917 5788.0718 8582.4415 7647.8591 11932.9759 6453.9574 206827.6238 18735.8722 11042.4687 3434.7892 3434.7892 6149.122 14262.8921 12806.5768 8870.8048 9014.3812 4300.7139 5670.1964 9827.1939 16604.4919 76582.5071 33481.3355 20071.4603 8901.304 3522.5077 8853.8153 8470.8102 8062.0267 7373.2218 315415690 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 11183.2169 11504.4908 41317.3757 6630.267 56038.7341 7257.0474 7964.0317 16375.6649 18211.7991 569296.1857 5866.3902 8900.5697 16275.0069 9340.9561 9340.9561 89059.0624 21605.224 15681.6858 17678.9655 7686.5248 10646.9325 8943.2291 7225.132 13261.7207 7401.1924 76086.5464 32619.0193 12898.5099 14701.001 9164.5205 13349.6021 7833.1772 10441.4082 262184445 amyA Carbon Cycling Carbon degradation Starch Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 9329.581 9833.9854 10178.2099 8242.8303 6040.1179 5020.7185 3333.9994 8123.4124 12704.0426 3554.8312 132604.8794 7720.3888 79678.0015 6263.9887 5372.4168 5372.4168 6706.6563 11754.2338 8470.8401 5352.801 11277.5088 8884.8569 4045.219 5118.1347 15953.2413 6554.6623 19565.933 10813.786 11787.525 4586.4993 9708.8931 6976.8303 7272.8767 14206.3869 158316549 cdh Carbon Cycling Carbon degradation Terpenes Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 55853.5099 11718.8505 13187.4796 28420.899 30527.1246 154777.4411 13669.9695 19626.9107 24480.2018 58919.6154 36337.1305 635683.4859 25917.6321 86436.1801 39811.095 23021.1645 23021.1645 20914.3461 79601.3833 23866.927 115476.9284 192719.3719 59927.1845 20106.8885 22471.6558 29268.6025 73901.0978 92500.4185 39291.9962 83530.4445 14463.222 29144.6103 65982.4737 36115.508 38738.9116 377807380 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11568.3931 6850.1735 4932.843 4091.2996 3086.5482 6366.9479 9993.9628 3750.9514 122208.9671 10711.7692 7718.2334 8084.0689 2655.3797 2655.3797 5188.794 9484.5951 6870.2518 9265.0599 13907.5914 9734.7605 4690.7465 6081.4406 9974.0318 2873.6958 15959.1437 9745.4645 7582.7055 4383.351 7693.3172 9663.4209 3634.7918 9851.4131 433675684 nosz Nitrogen Denitrification NA Natronococcus occultus SP4 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronococcus;species:Natronococcus occultus; 65052.8601 11626.251 49328.2751 65238.6151 24199.744 19598.9755 44096.5979 65837.2144 22502.0129 33629.6317 45826.9342 31433.2241 728496.6022 45317.4794 43405.5528 43487.4566 37498.6355 37498.6355 33924.8973 58471.4453 35078.8136 254954.676 44650.6238 87455.5843 27880.0664 18685.9632 46985.8704 23321.6562 73127.8649 38000.5974 56110.811 29671.5803 33722.177 36242.9945 50198.746 54329.9378 221738110 rgh Carbon Cycling Carbon degradation Pectin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 34451.0611 14324.6403 29621.2311 64410.1428 38475.8196 10035.2023 34090.762 21585.3349 17253.7719 25838.445 28875.8257 18854.075 674211.7953 36731.8055 33461.1202 25462.2141 14764.6332 14764.6332 28877.2987 46362.2761 31754.3828 43330.4818 45458.5911 61299.1687 21229.1609 15083.65 65849.8374 20520.2287 66229.1799 28289.7491 37893.3764 23382.3865 23323.8251 26103.6447 20334.0389 60873.8394 356663200 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 315623.0834 331916.4494 148357.2981 557125.3886 3425584.5427 387496.1582 198503.2113 322049.8073 204901.5164 279424.6396 237985.9608 162488.2186 7929486.5365 375004.6164 316261.8825 469993.1932 252429.5128 252429.5128 221281.2264 372009.161 154127.3559 193682.2626 236830.9954 553306.8216 189470.2547 162185.6223 374791.2931 136746.2464 1087531.9179 353093.6691 322531.5541 153894.6623 161343.9822 260799.9349 116755.7309 451929.7114 163857840 ppx Phosphorus Polyphosphate degradation NA Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 144153.2074 28345.4437 48219.0343 1619393.5453 55300.3569 15130.9576 70454.8295 74034.5716 69944.0385 58573.0997 95964.8544 73019.7089 3260930.9628 168474.6891 279680.7568 178481.1706 145941.8544 145941.8544 94141.5138 132647.1002 70973.3956 330096.9804 335520.8595 108361.9121 83870.0578 60484.6429 118231.6681 64572.9651 193563.4344 148695.2536 107737.8061 45653.6803 69709.9952 102530.9431 118881.55 121938.4284 329301478 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 11152.8532 5888.3034 9016.2787 12448.9074 8276.7665 4935.1554 4039.0266 5953.8204 10918.0509 3815.1637 8768.9933 6418.369 10957.1565 12983.9109 4101.058 4101.058 9943.7664 13699.1538 12780.6364 16601.3184 13481.7937 10103.0431 3632.0753 8306.4658 14266.3044 4415.8445 19278.446 16521.1892 27955.1537 4369.0679 7059.7696 10046.6472 4667.6102 14654.6845 196185934 amyA Carbon Cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 342628.2136 14974.1405 190708.9615 301865.9339 270858.2803 186190.9434 167034.5083 233796.8501 106410.4515 107165.3013 276590.3864 165212.4138 6628621.1308 469656.0788 388657.5041 772676.7084 274066.0278 274066.0278 104263.629 234547.6541 191418.1286 1212269.1046 365185.9451 152348.5742 124165.381 147576.7991 244711.0511 320068.9205 575237.6259 158131.4476 240961.0862 152880.783 139865.3261 182040.8894 131603.9388 127106.1914 73541021 ben_bcla virulence NA NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 12726.1559 6434.7835 7212.6589 4808.197 6540.9183 2731.1517 4761.8568 9655.9392 7299.9649 143504.8325 6748.6903 9728.0748 50022.8502 4384.1827 4384.1827 5435.2295 29047.423 7433.0706 10769.838 9764.0815 7274.0181 6218.7071 9071.9348 6660.458 7523.5433 20885.5715 7240.3105 11841.1117 8195.2939 14417.1995 8687.1277 12153.1059 8820.2881 299134583 amyA Carbon Cycling Carbon degradation Starch Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 158558.7614 27847.4151 87026.3422 23978.8271 8273.2084 112074.202 32816.6154 26646.0746 26952.4353 33982.2058 54718.3804 713239.4739 32076.2105 32962.3375 39187.1426 52865.5002 52865.5002 16963.0676 100372.4386 41449.4277 76378.6191 41663.0832 64472.5804 31658.0627 21997.9606 40634.5804 43217.633 72413.6354 59050.2256 41484.2271 46513.4855 35311.3308 56200.3397 21542.3336 37690.8597 345125349 hao Nitrogen Nitrification NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 17486.7909 26773.8612 11609.8675 13198.5407 8984.5355 4216.6565 5718.8626 6119.9454 11849.4906 12983.1617 8685.7582 246956.7217 7637.4247 15889.4324 39003.8751 12161.1745 12161.1745 6845.1688 29800.4727 10828.7085 58439.9164 9542.1122 27074.0403 6491.6401 10707.6528 16849.9201 6198.9164 21310.8428 11430.2615 15257.6858 3929.3148 17925.162 10034.1713 7923.7231 9935.4538 34397732 amyA Carbon Cycling Carbon degradation Starch Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 14536.4622 3115.235 5350.551 7801.5034 6275.8604 3783.362 72924.0246 6604.9414 5306.9898 4889.3502 4889.3502 4186.0773 15456.2519 5712.5589 5911.7773 4432.0376 12057.222 3377.2058 5094.9965 12506.6382 7806.0408 17476.6871 3885.8884 8903.2303 4015.6964 6892.1767 42627.5446 3844.9236 10660.7625 60593161 dsrB Sulfur sulfite reduction NA uncultured prokaryote 9208.828 3089.3532 2309.8725 3766.6218 7249.793 5484.1284 4373.326 4518.4264 4972.3577 4972.3577 4035.1248 10658.9744 4222.0503 5111.217 6362.2205 8453.2543 3825.548 6264.6494 2227.9735 11703.2468 5110.2657 14283.1001 1959.3117 4820.0869 4478.8256 3905.3168 9933.1459 157320820 cysI Sulfur Other NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 10910.90175 4486.1695 5744.0661 6959.77835 10065.36875 25924.63895 159113.2042 10317.4184 5706.2953 6543.24885 7713.86715 16298.32125 12635.3307 13887.3747 11187.9909 7007.92625 9052.3471 15291.4976 23673.8754 12787.7091 16232.5391 13075.79335 10283.54275 13150.7158 354722619 pme Carbon Cycling Carbon degradation Pectin Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 4618.5372 26340.9886 4453.1397 2527.3303 8068.9492 4996.132 72127.6353 9349.1229 10572.1975 10572.1975 11015.1104 5911.219 8912.6933 5385.2181 5973.0375 9825.1748 4669.1989 8032.0995 1998.9563 4702.6815 14983.4235 2168.7385 398388171 badh Organic Remediation Aromatics Other aromatics Zymoseptoria tritici IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 210512.7383 15145.6528 309597.2029 29879.7525 24755.8882 5691.9248 19743.473 40299.1287 62956.5337 73240.4271 25157.3711 631168.7221 24700.0511 76081.8858 111481.2048 80173.8103 80173.8103 32495.2116 23853.4617 16780.5171 25292.2948 41988.4328 32162.5525 13203.699 17657.7148 27531.4229 20165.5161 43786.6289 14641.6964 21769.7725 32210.9668 24691.0909 21870.512 55978103 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9497.2375 5212.3473 11944.4317 5150.7812 5150.7211 2616.958 6501.654 13639.0325 27819.0911 67691.0785 6440.6895 4200.4205 18902.3949 18902.3949 3963.3422 7142.2775 8430.7103 5766.4272 7928.1025 5819.2795 2589.7984 7298.8593 7935.3585 2697.5637 10569.088 6309.8995 7078.2573 3642.404 4374.9794 3902.0472 6071.7731 5354.0133 120405856 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5720.6871 131025.3989 88817.1451 8300.307 9299.9773 7538.6561 6335.9 9020.9295 4841.835 11659.4823 20476.5886 10368.4135 512671.4535 10328.6974 19443.7388 6316.1584 4989.2815 4989.2815 5268.4599 15415.9515 12121.3714 48103.1344 25065.962 8075.8392 4746.3803 6704.2002 14504.7155 6245.5974 25412.5519 20096.0623 15478.994 6664.4598 12050.1991 8746.1177 5905.688 24789.0737 16506231 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 8853.2731 6919.7052 4486.6275 6848.5549 7676 6609.1704 7591.8167 94503.05 6572.9057 5427.8903 5886.1404 6750.0702 6750.0702 3785.7671 38315.8787 5842.3602 22657.8249 11091.7026 18229.3705 13464.5291 15515.3981 10764.7289 13528.5041 26638.3714 6261.9806 13269.0919 4315.2177 6526.1321 7362.9659 6315.0379 16213.5055 303278055 nitrate_reductase Nitrogen N Assimilation NA Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 81599.9193 12000.9415 70657.0858 197647.6373 50583.2939 30732.3784 105134.8451 242719.7548 80166.7085 50093.6339 84982.3534 84446.2176 815973.4708 96077.9151 146606.4315 203442.459 78715.6751 78715.6751 41972.2183 140295.6194 64742.8827 101265.4652 107254.3072 109327.0935 59915.6499 91154.4 58666.2061 121211.4853 247791.0704 115353.3525 126752.9098 104492.8997 75427.5824 98621.4924 81057.4243 77627.483 299134974 TIM Carbon Cycling Carbon fixation Calvin cycle Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1065914.7022 793325.2079 753481.9079 1758723.3104 2611147.7893 904589.5124 611433.6297 683684.6964 704099.7953 602964.4207 705107.5688 384846.0322 15929773.7529 831413.7858 759900.2256 1670050.1288 570020.8101 570020.8101 457843.2414 560134.9508 462860.441 731202.7449 922050.416 730118.5063 418158.9135 369167.4771 993882.4291 292359.8727 996406.8817 485794.5883 753528.2237 388541.0878 341284.5753 368651.0638 372681.8539 1156475.0804 115257183 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 55233.7733 12971.9642 33493.2265 22498.8495 34188.802 7796.4841 65632.3726 39262.8902 26753.6539 78328.9161 82875.9303 35225.6238 570328.7293 84009.1789 40334.792 31565.7533 42307.7689 42307.7689 39019.4106 75975.2113 35122.2591 104571.3208 130480.897 122494.5523 47713.0138 61288.636 60830.8417 43286.1108 131821.4026 147383.4623 169864.7075 29119.9754 45409.2811 41370.2859 33640.3957 97128.5581 378750412 mnp Carbon Cycling Carbon degradation Lignin Lenzites gibbosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Lenzites; 93963.8119 4745.4198 11475.1955 5317.5686 10911.7867 7146.2838 18610.0097 5587.5194 7407.9008 34060.8755 106112.1613 156508.7534 12201.8709 6996.1789 21480.8999 21480.8999 18725.7905 25541.3874 14038.9177 13184.2439 283449.5425 16499.4751 6890.9798 7346.6755 18884.2083 7607.0992 16343.838 17212.4522 14055.9045 8073.7629 36715.1382 17125.1759 11404.615 9114.1956 374990486 amyA Carbon Cycling Carbon degradation Starch Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 15714.7118 8170.3867 10923.3571 8057.8037 12779.0486 12388.8639 12489.6868 29686.2391 9692.1866 14926.6749 17336.6338 162283.3587 11674.1702 29984.3821 16998.9852 17831.8531 17831.8531 12997.0364 13740.7728 10613.1309 10478.4609 11462.3122 17936.2677 11243.4705 11043.1274 16603.0681 21124.2811 37237.6946 12052.5503 15063.4168 27037.8274 14440.7674 166062.3344 6908.3458 7413.5011 58268820 glx Carbon Cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 10779.076 11624.6187 12521.557 9550.9417 5589.1966 11503.9102 22367.9126 10752.7362 16310.4024 8915.7845 267785.0422 16622.9067 9836.0837 38032.2224 31577.7402 31577.7402 9210.9279 18561.478 11885.7571 7382.2348 13653.6582 11747.0077 4305.1306 10487.2788 14986.8977 6952.281 36072.709 16960.5135 15926.8219 6555.4458 9383.232 9239.7694 6705.418 14597.9931 254437324 pgk Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 96727.786 30165.4753 12946.6059 25731.3417 5913.2011 16991.1511 17898.1444 9944.3001 30044.3911 32370.2467 22334.2096 606786.5049 101677.5396 27008.973 79825.1403 42992.9929 42992.9929 20047.0141 54190.8652 25167.4146 220659.0569 114267.5583 27316.5409 31449.1547 24563.1113 29328.1294 16047.7662 85980.2212 20868.2193 49087.8051 14130.14 27850.0009 33467.3334 33303.9972 32619.0397 111615554 ppx Phosphorus Polyphosphate degradation NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7696.0947 10679.1495 23745.7909 47977.7881 8546.1715 7776.8425 70050.7747 3930.5002 423127.2208 11790.0307 8119.2485 12161.564 6577.0683 6577.0683 5514.3895 14961.0283 9674.005 11550.0165 7413.1319 3773.7234 5052.9301 11955.1645 3372.7292 14876.1758 10609.8296 14303.5026 5097.4026 7218.5524 5285.1072 7793.1474 7332.2829 238029053 arsc Metal Homeostasis Arsenic Detoxification Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 4433.3513 10022.4406 1981.0058 3679.9197 3790.2151 5824.5447 105621.1651 4338.8552 3509.3845 6349.3982 2952.3011 2952.3011 7146.1334 59733.8841 7774.9984 42235.4304 26998.1863 5923.3644 3116.2303 4462.4646 7457.1359 4012.5124 13351.6317 15265.4514 13598.7415 3245.2874 3626.8814 5178.6406 4383.787 5811.9392 194345721 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 23651.1528 8444.4679 15204.4306 71922.3964 20239.5062 7361.8162 11848.0256 18482.3508 5835.8069 11804.2018 10741.8236 264872.3763 15952.5716 16456.9989 26844.631 17875.1109 17875.1109 22918.2456 20381.8994 19289.5172 22392.8019 420582.9137 7574.605 15577.8581 10440.5244 35241.9409 15541.932 23065.4403 34642.8347 28954.7586 11102.0383 11706.1419 15108.4352 4726.7321 8508.822 120405256 amyA Carbon Cycling Carbon degradation Starch Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 776765.6644 3471.4979 35488.8444 9038.7904 6152.2249 3625.1016 115690.9747 4257.9981 12799.1008 8955.5487 8955.5487 4564.2174 12119.6163 5361.8294 4068.8473 5079.7264 6273.7235 6337.67 4588.6412 6831.1358 2711.8933 11047.3489 6324.3655 11387.3761 4048.1973 5318.7091 10172.4496 5399.2337 5023.3535 148975269 chitinase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 7608.7963 14340.2819 7024.2927 2927.4772 17525.7225 5900.4028 5968.8588 10726.8078 5042.5416 90629.5809 6983.3908 7955.4356 12785.6355 3340.1112 3340.1112 5391.38 11304.086 10680.1285 16824.9591 15282.9069 4908.8505 4021.0968 6197.3922 9264.4937 13460.9198 18084.3906 6007.464 7460.2173 4426.4849 5789.9712 7204.314 7645.089 4894.605 119952696 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 4008.5242 3180.8636 4447.6268 4147.456 3257.4811 56526.9507 3703.2783 8216.8366 4218.343 4218.343 3227.9668 8483.9725 4666.1436 4414.6148 3390.1632 6672.2508 4066.9657 16735.8317 4993.5442 9295.8254 3459.0694 3371.9371 10125.2885 2745.7438 6012.3495 315494512 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 25307.707 20555.4318 21083.3461 33543.697 13929.3782 8860.5927 64009.9705 24726.1176 28257.2568 28290.2971 30233.3154 16961.8329 548473.8363 32842.3692 35675.3107 33355.9772 17534.2011 17534.2011 27175.8186 58897.8734 28484.2101 22683.3826 28657.536 38101.888 13791.9951 14926.596 34486.4578 26732.3555 52888.7211 13897.4516 28657.5865 16007.0195 19303.6686 27087.2761 20308.1814 32539.9308 150274104 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 11959.3903 8295.1408 11168.8043 2326.9936 238468.7538 5898.1248 3577.8163 106058.1467 15900.6463 3305.6537 14169.5703 33731.7385 33731.7385 6723.815 3603.6873 3793.2512 7047.7349 2588.8627 13953.8249 4406.6352 11729.9836 18813.0725 8776.8964 7963.5237 374373308 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 4503.8243 4398.557 3606.2577 3345.6914 67340.698 4101.1764 9385.2995 3780.2293 7844.2231 2282.1614 11788.6776 5656.7707 7379.789 2131.7795 19817.6158 6216.9008 2905.9222 4913.1216 224039153 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium janczewskii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 16883.3287 5272.7796 35958.5968 7648.5761 5363.0039 120962.05 9913.9678 46548.3123 42936.7269 2909.3335 2909.3335 6734.4042 241870.6462 10680.6118 7158.0172 11160.1263 5537.2528 11518.2126 64919.4849 6347.3521 5815.9515 5659.1272 4517.5169 2745.8358 5236.3011 144905863 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17960.1107 14970.6937 18033.0635 22518.3855 24556.2928 12154.2923 26513.6321 10205.3634 19221.4401 22542.9876 10357.9556 533444.8321 27973.627 17966.3104 12723.7327 11393.1288 11393.1288 12719.0943 19926.3564 16140.1865 24977.8237 26083.8248 27510.5909 9418.1165 8832.2598 22045.6852 9761.8478 31314.4879 22999.2879 22534.8525 8497.6501 11811.0803 14211.8773 8104.1246 33775.4166 372280099 ara Carbon Cycling Carbon degradation Hemicellulose Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 46316.3881 43898.2668 22677.0167 60736.4958 195881.5868 21366.2204 39623.6059 38064.4828 47442.1371 81083.7635 80518.1908 2238476.6504 37961.8864 151835.5267 45237.4027 50074.8985 50074.8985 19842.7265 64294.6775 38936.6768 52101.3517 54618.7173 82042.2629 24231.1185 28030.7474 94672.2412 30596.2936 124638.2287 67397.1031 79092.8178 84934.7959 50900.474 43407.7787 63026.1967 77761.906 118424359 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4800.2969 95114206 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. SoF superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 66687.894 18189.1513 19575.1199 98966.2292 66504.2111 21587.8505 40277.6848 45327.8058 33615.371 273711.044 153300.8918 73183.8008 985459.6986 321694.4174 78935.5353 109496.2312 59002.7641 59002.7641 29204.1711 111226.2717 66493.4695 61839.6434 159719.7444 534348.0882 30332.6977 33631.0455 82591.3607 57942.7435 398966.6883 42582.7692 83527.2674 50722.2257 138103.442 50153.0511 40136.5923 99681.5147 324108105 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 4437.967 11940.7972 4061.3492 3194.2912 6397.3928 4618.6411 71544.5749 47682.5836 11249.5425 4262.4499 4262.4499 35513.3641 3829.3907 5518.7616 8294.4761 5776.4002 3147.161 5203.697 2508.4138 9219.5817 4338.3424 4883.7066 80686.8698 3578.348 8347.8972 4877.617 7355.6203 148272582 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 502330.3876 16968.5571 276162.2659 67099.3428 263027.45 88732.9965 161852.3063 512187.0344 78776.6175 74243.737 152343.0417 203924.4422 1657987.4811 183442.6176 114739.7277 95432.218 165027.512 165027.512 64065.1685 131251.7698 53313.4006 239162.6959 146929.5468 56848.662 140751.0449 90832.329 132922.7466 80697.644 145452.8571 149076.1561 186215.5957 204712.6054 102840.5715 105528.3031 65908.0472 341449.2215 317166688 glucoamylase Carbon Cycling Carbon degradation Starch Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 5651.1297 9915.7793 8741.6218 13062.4483 6289.0665 3450.4176 6214.6041 5677.0739 4198.378 17358.0513 2417.9558 2417.9558 5334.7204 6189.9042 3505.6416 12049.9684 5479.4804 4641.8782 2776.0704 2692.4768 5553.4768 10108.191 14824.9877 5566.1226 6932.7173 5821.8152 5045.1805 4833.4532 5278.1361 4200.7851 409427374 nitro Organic Remediation Others NA Pseudomonas sp. HYS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15317.2164 13473.2231 27162.0436 20839.3111 155768.2834 24616.8004 46314.9997 16754.1197 33835.563 33505.3377 23501.1963 678406.3507 98339.2793 29322.4668 32796.1578 16062.2965 16062.2965 25693.6792 31237.1868 30121.3692 26275.7602 43719.5046 40169.3904 13363.5989 15496.0661 38844.3224 92784.8232 59597.0421 27745.8601 32260.2684 18711.6895 31851.3727 19829.0903 11599.943 34166.7918 313005761 cysJ Sulfur Reduction NA Neisseria lactamica 020-06 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria lactamica; 18177.4773 203896.5167 58831.6102 14207.0319 18751.6801 24503.8114 44516.0452 15962.8207 16397.3868 58021.3441 346704.0116 24022.8209 21538.9828 16299.7682 16544.5861 16544.5861 12194.0573 26988.95 26389.9127 81725.0253 22334.2392 23883.0971 12846.7573 14860.3329 19905.4317 32594.7293 52370.4803 25874.3042 25729.4336 15832.507 52420.1795 17030.2451 71141.4852 35277.3997 223714290 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5988.0609 1648326.107 11718.2879 9879.4749 8342.3436 10587.3846 4364.8709 182235.1126 3703.936 3323.6763 7813.3163 14028.5474 14028.5474 6944.7708 9399.9459 7259.5636 12023.0258 11299.5665 29652.7389 4086.717 56059.5637 39243.6943 5672.4174 7292.4271 9592.8217 45594.1568 58231.9884 7681.1888 115421687 bphd Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 7331.5746 8637.6048 2798.3483 2635.4882 4390.4443 4991.6794 8267.3525 5651.1627 8859.7474 4994.9084 8877.8826 5315.5321 5315.5321 3307.1656 8061.8107 4365.7134 830828.075 5308.9758 2828.4158 3244.5584 8723.9057 2695.136 13588.0083 4619.0933 10160.7627 3178.0132 3200.0114 3501.1943 2257.8603 7315.2694 227488002 amyA Carbon Cycling Carbon degradation Starch Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 6448.3074 6373.5026 6504.506 52549.2388 16668.2693 4287.252 6260.7444 116428.4775 3423.6359 84572.0339 5219.5918 4354.5959 4769.4067 5753.6529 5753.6529 7352.4057 10797.7589 12645.7423 18098.3488 9215.4628 11051.156 5402.5348 7364.8964 8409.4925 20836.9381 22655.4402 19562.033 11175.6673 8982.9852 5053.8935 8619.1741 3394.7673 15645.2603 146340739 nira Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9746.1863 7707.0923 11165.0564 31350.091 16235.1311 7533.2256 4761.2149 9920.8695 12922.8425 90934.6452 267543.4659 22290.7379 32720.8832 7383.0546 18808.9162 18808.9162 10432.251 15460.617 11165.1334 7219.8457 31420.4849 11985.1632 9303.1514 18255.834 25483.1499 4295.8646 49759.7887 14111.3703 25365.534 7480.9379 9140.1597 16132.5056 4294.0668 15088.5149 318041476 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6173.2385 46307860 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15119.2273 6873.8453 15188.1927 4227.2965 73925.7792 7207.3027 114720.7816 114720.7816 19415.9484 5352.1105 119177647 nirk Nitrogen Denitrification NA Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 4722.9068 2614.0301 8759.2433 3097.662 6617.6255 4871.1128 7595.3789 3856.6728 188520650 pme Carbon Cycling Carbon degradation Pectin Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 36064.6708 5401.1382 17034.7685 13333.5098 6899.3815 17784.9275 10589.6633 4238.8025 86098.2607 4565.5698 5328.0682 3795.7869 3795.7869 4889.3988 17021.4483 6436.5295 8995.5399 6255.3668 2317.6713 9564.1442 2930.0164 14431.9632 12026.019 8934.6208 3237.5773 6491.4485 386846789 terc Metal Homeostasis Tellurium Detoxification Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 19165.7345 18790.5306 5688.9376 10807.0874 11218.9709 19008.9839 20403.4126 53549.4176 19572.1483 17657.7461 378216.7906 17358.4364 14441.6229 49995.2237 32259.3554 32259.3554 17634.6366 64092.8997 13695.6572 35408.5931 27843.5481 17518.7817 110030.7143 14477.6176 21252.7325 30686.882 83373.599 35931.5459 35263.353 17720.9784 26431.3787 18890.0913 26913.8214 40519.6535 78093580 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15041.594 17963.5781 15024.4783 29037.1311 10897.2014 7504.7947 21972.8117 7126.2012 9855.9129 5527.686 179908.7295 11013.6133 6254.257 6427.002 4942.3699 4942.3699 9252.3773 15488.0497 15612.4193 81442.7327 17898.6015 11396.4985 9850.8116 6659.7607 11870.1409 12470.3207 20510.0849 12472.2566 13681.9931 4433.4643 7102.8706 8864.2544 7809.7834 43154.6709 260778371 urec Nitrogen Ammonification NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 4963.2635 4342.0031 690803.7801 2341.345 3663.5042 10440.7107 7230.6778 115513.8524 14381.9833 10269.0176 4666.1472 4666.1472 2487.0361 7837.6838 6015.2207 7251.92 4067.8557 3108.8078 3518.5446 8348.093 273389.3606 56307.5315 4542.0845 7311.9444 4059.0148 4600.2783 4675.8328 3952.3498 5577.9918 242221597 amyA Carbon Cycling Carbon degradation Starch Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 18315.2701 35387.286 28049.7256 16613.5892 21483.8821 4138.6736 46626.7184 6471.7882 51435.4952 34885.5711 12748.8932 287594.4332 11948.1302 10410.6056 40176.618 10706.5767 10706.5767 16021.1971 23473.3413 11932.1852 15474.0776 44653.0877 9947.7918 32984.4675 8079.3602 23228.4686 8110.5481 40935.6514 14550.7037 23212.9997 9853.054 9281.3286 16227.8679 5602.924 11073.8172 228480939 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7726.2124 12442.2868 13588.3114 389694492 ben_bcla virulence NA NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 3969.6689 131919.1653 14649.9113 3321.9069 4587.2095 9453.1699 2779.8622 81466.2008 26993.8962 4400.8333 5661.6133 73116.1082 10524.1662 7598.7528 4544.1532 5511.4952 8134.6654 2774.5615 4735.6237 9446.4321 3546.3032 15412.0262 3667.6441 9122.2177 2699.0664 20615.6892 8441.7296 3236.693 8729.5464 355529510 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 8528.9012 9548.1613 19011.6912 11212.8873 20079.0771 4250.8114 8661.8718 12697.5521 8953.4506 218810.7993 12545.3974 10007.4024 7649.8151 13751.0841 13751.0841 6836.9836 16060.8408 12302.675 28170.8276 11895.9606 10967.4918 5630.3082 5813.3029 12704.1338 6318.8263 22421.1275 10866.5851 14218.826 9069.8664 7729.3416 10443.8151 6865.2024 21694.5003 398027134 tfda Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 44951.7903 22444.5742 31485.884 36956.1988 217809.9499 14145.4993 30333.1495 27312.9904 19370.3048 35443.0888 46647.0777 26446.3371 807818.3898 36849.9222 79398.2451 34198.3158 29787.7216 29787.7216 25349.3172 55902.1818 31585.9406 212832.5144 142507.0725 52531.3124 28340.9785 25567.3063 35358.5943 27939.075 81528.4999 39305.8588 44945.7895 18646.7103 35918.9195 30615.2435 21349.9041 49229.437 50082962 linb Organic Remediation Pesticides related compound NA Lyngbya majuscula superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 3998.6762 4875.4015 3773.4356 173674.4767 6463.9216 4172.6218 2655.1412 4026.0011 2045.5662 7143.7531 2220.6938 388006915 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 63677.3037 1447669.6161 5588.6529 16762.2161 17919.0488 2751.1983 16470.4046 4736.383 14681.4698 10299.3258 5985.4024 233083.1322 14580.2353 9913.0774 10966.1049 20307.0582 20307.0582 17664.5 55949.8103 15030.3091 21246.0649 37113.1382 24942.289 37515.6176 14555.6875 12402.6647 41475.6862 32629.7884 11265.4578 11510.0516 24497.3104 8015.5431 24286.837 26903.3734 10845.6826 116634791 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16100.7292 408057.4793 8434.7757 29455.885 5387.586 5534.83 4278.5426 8843.4474 14220.2974 10647.8495 124168.6036 10002.6517 6888.4221 32753.7949 9197.1725 9197.1725 82743.3886 13241.3679 11278.7811 11389.9173 34071.4163 23078.1906 4597.039 5547.0535 10548.2166 28444.6949 12320.7376 19018.4216 14614.2112 3648.4691 8992.3128 14986.7858 5309.9308 16738.2726 237846109 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9841.8246 358637762 ppk Phosphorus Polyphosphate synthesis NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8866.3662 7760.9148 19626.5284 11210.3454 19630.4401 9629.2571 11772.44 5099.2215 7514.5335 8351.8162 118483.8272 6804.0157 11114.2622 11260.1024 21923.3164 21923.3164 9764.3829 14540.101 12337.4133 13633.5652 14316.8284 4536.2601 10359.6235 11258.4873 13818.5179 9532.0038 27707.6571 46961.544 15138.3168 9719.8435 12375.3761 16871.6767 13708.436 13378.8817 70672905 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 779738.6006 26953.2466 5155.9851 11656.3287 6368.4512 8121.6851 8359.5988 7280.1533 10225.5319 12869.5287 6063.4729 256729.6318 14836.3324 13670.2847 13479.2753 6348.969 6348.969 8341.9591 17915.5488 17621.1883 16366.8578 16026.1314 20647.9177 11667.5581 8471.895 18440.7725 6900.7348 28027.2692 18205.7346 17289.0177 6140.1287 7614.1773 9494.0601 5960.5533 70473.8269 297561172 xylanase Carbon Cycling Carbon degradation Hemicellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 9593.8792 4225.5808 19937.4339 3043.7695 157647.7836 7307.6644 4728.107 4202.6716 5681.5892 5681.5892 7934.1873 4112.4351 8779.3492 7148.869 2903.6579 3725.9263 2300.5654 223999185 nitrite_reductase_protist Nitrogen Assimilation NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 21245.4416 31634.4488 159172.4182 8935.669 3482.59 6772.469 8023.6139 9327.4755 11955.603 258229.169 12339.6775 7808.8596 15673.3758 7921.5511 7921.5511 7589.646 18347.1405 15128.1169 5148.7123 23341.2466 4679.646 8014.4883 26926.5334 7487.0554 80969.3948 32819.8576 21279.4151 7298.7668 20687.3124 9766.1062 2791.3694 6237.8227 365810716 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 21343.9987 8529.6861 12887.1005 18671.7789 6171.1283 15481.8875 13248.065 57342.7586 13782.5238 16846.7367 20253.2469 246317.412 10491.7468 16504.171 7511.246 11269.2696 11269.2696 12246.8182 34174.7495 32913.4836 6654.3961 20145.1429 13854.58 23626.9209 10657.6286 15847.7606 25493.9491 35998.9326 13450.1134 26254.8038 10838.7549 14948.1452 19517.0046 7942.6786 14204.2296 259652703 TIM Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 16966.9338 12928.9388 6286.9394 11474.5113 31873.1323 15706.9127 10605.5745 28747.1935 5100.9718 231297.6253 40987.1135 46671.5308 162271.9394 38476.3682 25256.745 20618.4044 17611.7125 17611.7125 11282.9456 63991.4932 15090.5179 13207.5799 27501.1087 13573.2315 8807.8067 17777.654 27912.5011 14742.8475 68739.9176 36225.6238 20839.1912 16332.7483 28251.5828 14739.3913 20835.0988 41437.1421 169793376 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20278.7771 9991.1132 11929.2844 27641.7727 8514.9971 14031.292 16967.328 9101.7229 14870.6229 17183.1552 19860.5984 325536.002 17796.2318 18681.643 34596.6833 19908.5875 19908.5875 13202.7921 36373.3925 20233.386 18087.6709 33399.9773 28143.7653 11863.6536 12559.116 42222.1108 31008.0435 47952.7176 14998.6984 19569.571 14795.3034 20144.5758 20119.8052 21497.1227 23010.8558 349784065 arsc Metal Homeostasis Arsenic Detoxification Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 19128.5119 7930.8974 17153.7065 33465.4523 72223.5132 14898.6211 17860.7485 17873.7172 64311.7772 15616.2842 193145.1281 396658.4453 18054.4454 26135.5377 45905.3652 21362.5455 21362.5455 11405.9187 25691.081 537182.4293 12443.1329 19667.5713 16341.1987 6281.269 9825.918 30183.8135 9702.5832 33377.0502 21047.9591 26389.6501 8399.4733 11125.2808 11765.7414 8162.2992 20573.708 311887319 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 29415.1731 25579.7734 29723.0482 19256.6123 24240.3014 10296.2532 43307.2583 52007.6024 16490.7937 22298.3693 36274.2874 685579.8556 33196.818 47185.6764 37871.1266 42139.7205 42139.7205 15413.36 44467.2121 29582.4325 14259.5816 29120.0014 76374.2734 19353.009 19660.1926 20345.5578 55072.7235 37183.1574 20112.7381 33373.6488 12514.6782 33576.5502 25345.5825 53092.7703 26139.4269 68135519 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7348.3384 3889.9084 2403.3369 3510.8689 3050.4426 5604.5957 4816.9599 3796.5133 108309.7827 7841.7115 4930.531 4947.298 4813.6434 4813.6434 5297.9875 10886.497 6136.3896 13834.361 7736.2893 111431.1624 4117.4467 3291.4584 8553.8327 2762.2038 13439.9976 4966.6514 8507.4431 3517.3341 4878.7612 5222.0506 3785.7174 8832.6082 56566202 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8413.0928 10000.5554 9092.9569 16339.1577 10786.2632 5783.9476 6588.7876 4621.2734 11952.6827 4917.0561 205982.3688 11670.4865 10465.0198 6056.6095 6126.6418 6126.6418 4597.038 26728.9305 9835.2757 8260.5003 9898.1278 11157.2346 5697.1625 5834.4349 15639.8974 12065.8993 26039.0679 10202.3076 15793.9893 5292.3395 8382.6785 10668.5026 15723.1553 12498.06 145236316 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 88183.6243 29765.5564 8560.00705 11512.9121 7068.7971 7884.85115 13131.0708 21227.3571 162782.3493 13889.2843 29280.81325 20626.78995 24167.44595 9529.76065 19861.30725 7708.2371 16173.48285 22150.75455 11227.1071 30893.3101 42817.8466 9404.2836 8516.67955 14593.3169 167563426 alkb Organic Remediation Other Hydrocarbons NA Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 10621.6708 8523.7118 3017.8531 5345.0658 3601.3969 70091.9029 7701.9118 9463.6974 8006.871 8006.871 17278.875 6869.3314 9794.0989 10818.0364 3421.8302 2613.1177 7242.8835 2409.3079 4333.7267 4674.5227 5720.44 76058434 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 164134.0665 311312411 cellobiase Carbon Cycling Carbon degradation Cellulose Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 220193.0489 37391.814 68885.3168 766492.5665 75287.1044 25174.3931 175131.164 97530.3774 70421.0976 75569.7589 98945.6632 82970.7287 1731901.4335 83885.7631 199983.7775 137596.6765 92009.1739 92009.1739 50875.2759 125368.6636 54644.6639 174245.6383 132949.9358 949804.0419 103070.1404 64669.3924 106362.158 136652.3886 550971.2326 169237.293 155585.065 59913.2975 90303.9982 120368.0088 59541.8704 126422.3527 160917617 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4164.0014 16446.3604 15086.9898 15584.757 5581.9162 11206.2777 15807.4388 7452.3044 8009.1789 6305.2138 3584.5144 7035.6651 7035.6651 4088.3411 14642.6409 5396.5882 7529.665 6556.0824 8210.5014 2771.7092 5755.7844 8837.9854 4231.7129 21068.7928 3476.4246 10115.2177 2989.0727 8759.4109 8059.8658 3844.8229 5990.3255 165880027 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 20465.9435 3148.107 3486.8371 8404.8613 12781.9854 4166.124 5082.8889 1974.0669 1974.0669 3479.5273 7342.9279 10135.0015 5743.2017 2884.8363 11648.7816 6133.6131 9143.1399 2071.2572 5512.98 2135.6006 84778307 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4915.1976 9915.6754 32979.0204 32979.0204 41407367 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7744.9146 30395.7311 79665.4763 2835.4832 4534.9105 8401.7129 2888.2427 4820.7166 15949.5703 2461.7648 2461.7648 5356.3959 12739.9319 5460.8551 18863.0887 4710.5182 7087.9522 4082.2779 7534.7964 3464.2941 26271.8664 4815.2636 9523.9718 3327.6513 8332.897 19054.6157 5181.1222 6210.6712 193161052 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19103.294 3349.8042 2315.3412 3255.295 5953.1996 4811.8946 2571.6412 2361.4011 5604.0118 9444.6445 1759.529 2665.3968 158422305 nira Nitrogen Assimilatory N reduction NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7430.5185 20994.5062 3055.3379 3397.9992 10510.2716 3524.8563 19986.023 3153.4093 77122.2286 523515.2592 8449.7691 5432.4551 4838.5878 4838.5878 7123.7823 9211.6947 10593.1537 5251.7616 8455.6768 5374.7325 2914.7876 5555.0758 13243.6936 3441.8719 11816.8608 11370.4761 7598.1999 2463.8162 5791.5318 2611.6658 335437954 xylanase Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 68187.3049 45167.7892 20080.7558 9752.0766 19437.5012 9235.2135 7754.1949 7455.2794 17797.9301 205962.1776 144097.4155 13014.8177 11867.4846 36622.1472 36622.1472 12952.6319 41559.0464 18562.4547 20707.4244 159207.9259 33118.5957 9830.8712 9113.7423 22983.8265 8821.2786 68609.9785 38982.1401 18080.114 9439.8924 19711.6796 20460.3413 226390.7145 23410.4955 379724036 b_lactamase Virulence Antibiotic resistance Degradation Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7148.6543 10411.8612 4820.9994 2143.5644 52376.7093 4073.7711 9250.6874 80678.9467 5899.7942 5104.527 9356.2521 31006.7675 31006.7675 12132.9154 10384.4297 10319.7066 7542.8607 3046.2352 5927.9659 2313.1345 12853.8825 9318.1982 7322.7323 10172.0583 5371.3409 4394.7571 68732.0513 402773135 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 8503.7032 14482.4787 16072.0062 14442.6271 60735.5271 6270.466 17257.6953 13226.3502 9182.3797 481711.0525 11112.3972 16517.1403 16373.8801 13681.7558 13681.7558 10777.2952 12957.5376 63630.2623 9107.4618 10745.2458 17126.1306 9404.2624 6636.3946 17304.6913 6454.4791 26556.0855 15644.3844 21298.8505 6654.5421 8730.414 20266.0436 26536.1077 16341.1238 329945637 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 13083.8119 56117.0376 35792.4347 9796.2834 4065.8186 7325.8031 6489.9513 10760.2678 14499.4194 13203.5933 455070.9291 18146.9516 39839.5156 14622.4216 17811.6666 17811.6666 12892.8751 20764.8051 13953.1692 9711.7833 22031.6212 15472.665 9479.8549 9186.331 16753.4953 11044.5912 31188.7562 19455.7967 24185.7572 8077.1158 17905.5979 14259.7372 6782.3396 16330.6119 359149744 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 76202.2622 10886.2967 16394.0938 89464.0646 24689.4247 25340.8475 26887.3116 43509.5343 36008.6753 25392.7743 24785.2449 411184.755 69884.0321 43849.1248 35511.1431 62282.5936 62282.5936 39040.34 41276.0863 50084.5252 32342.4858 42995.3988 35802.633 14678.4623 23700.5097 130520.3897 31277.6909 85140.6797 44727.7154 81464.3909 15741.0027 28931.684 34994.77 33381.1864 28989.8756 145221320 badh Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 21754.8489 21949.0822 17861.2936 5591.3043 8842.8775 61405.2146 10612.653 57429.1584 15037.4106 45673.8454 511897.0407 53498.2284 62566.4578 70340.1669 36148.5886 36148.5886 22519.8873 28555.9619 37767.9432 36786.6473 30411.8721 22402.6502 38384.7148 61751.2398 42143.502 77980.2689 41069.6895 229678.9696 69610.8338 13507.9994 16977.8549 48118.8378 24754.0723 33034.0603 238750439 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 8408.0268 6648.5013 5390.6464 4130.867 2375.2289 6156.8833 8733.8802 4795.6437 4706.8175 7430.1538 7552.7177 3199.2908 3199.2908 5952.116 13723.7791 9775.2735 8460.7387 12754.2201 6405.8343 4162.314 5266.2494 10665.5362 4007.9045 24421.5326 10120.1538 13376.6276 5492.9201 5431.7497 9692.9791 6349.5748 15371.1741 302194672 xylanase Carbon Cycling Carbon degradation Hemicellulose Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 13055.8044 11482.9852 16104.2303 25896.4574 9451.8628 13988.3933 7355.9641 18738.8274 17379.9695 9428.2041 343637.3015 23040.5074 15900.4871 13384.8671 8157.126 8157.126 12649.2546 29782.8253 15257.8785 47498.2433 20929.1884 22343.7433 8815.4065 8745.9783 16276.3756 16709.3848 35286.1709 19768.9339 23598.0886 19359.5592 11053.146 21561.8776 23870.539 21954.1649 156533304 cda Carbon Cycling Carbon degradation Starch Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 4178.3677 22063.4205 11216.1291 2521.0127 3705.1646 3591.7917 4004.4252 7939.8909 4033.3042 8555.0418 2292.0216 2352.6862 9112.4269 3715.6156 6006.0542 2908.2347 5635.7103 8731.1286 3416.5489 99030465 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 59662.4449 17409.3982 22229.6134 7648.7003 7974.6377 20226.2723 24792.8758 11138.0201 19706.0434 20022.886 264230.247 19558.9657 113744.5369 20873.5851 13862.373 13862.373 10240.1708 38057.7524 12776.4945 30729.8485 27954.5184 15718.7673 25667.6558 26138.8826 19523.4998 17578.8043 58578.0285 21339.9988 18477.2393 12037.0524 28034.1168 19980.7212 9638.3191 68500.0657 325267802 ppk Phosphorus Polyphosphate synthesis NA Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 5233.9772 4530.3657 2375.0697 3559.1119 4461.2 2903.0829 2903.0829 5633.8153 4945.8494 4338.3804 5625.9711 6051.4262 3543.1045 6728.1048 4655.9377 3393.4479 5225.6304 383622114 urec Nitrogen Ammonification NA Halobiforma lacisalsi AJ5 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 15679.3632 21501.0594 14965.7589 9545.0648 5577.0844 7082.9969 6268.9255 6924.2883 16725.1401 16655.528 11475.8429 323029.9921 15893.8692 14019.2176 15717.0466 11359.9051 11359.9051 25886.1153 25746.4136 14706.8655 15586.3798 25030.455 15883.4559 15354.9336 12561.6156 18154.6794 8132.3339 48510.4439 12569.2571 24146.5625 7771.1098 28562.1111 11694.2154 9087.6154 28325.0207 403200630 alkk Organic Remediation Others NA Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 4121.2545 32765.0323 8166.3977 2355.9297 2500.4061 3838.1878 5765.68 7388.4115 5675.8141 73425.5205 5201.9657 15345.4674 6949.3379 5513.1991 5513.1991 3666.2823 14557.4024 3996.461 17878.569 3156.4557 5890.1969 139936.0224 2036.975 9180.3144 30207.617 3145.7648 4007.7195 8565.8349 6397.5796 7666.4196 336012683 xylanase Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4038.6629 4233.2901 3117.7912 3698.881 4202.1666 105334.3956 4555.3334 7660.8245 8071.1191 4854.9061 6831.6924 2681.0635 5786.7884 10448.2639 6191.3643 6757.568 2228.3922 3481.2286 3368.5952 2900.5846 5409.5137 386391496 amyA Carbon Cycling Carbon degradation Starch Desulfovibrio sp. U5L superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 101238.9658 11749.9058 101460.6049 22359.5405 32206.0513 12265.4088 13549.0505 20454.5611 14036.277 40719.0728 113018.9859 44692.0022 479664.5235 141572.1048 44603.6624 23304.402 84044.7455 84044.7455 12041.9251 28776.4384 19072.0946 35771.1629 198365.9286 17549.335 18121.1413 18899.2958 35823.5795 12149.9203 97418.558 15844.4239 56196.922 26125.8185 24217.2621 20444.7541 19358.6817 22019.5908 78093558 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 83178.4733 19968.0619 25259.2493 4187.4612 26627.7808 12125.615 51878.6809 25747.0234 18845.913 30083.022 34430.2651 32143.2216 447892.5135 72855.0028 40989.448 101222.3671 30999.4592 30999.4592 21380.5796 57435.1941 38751.7827 97694.2796 37086.8367 27329.507 24919.7919 37428.0579 37447.9684 37138.9205 90943.4001 41124.5948 41004.886 13151.9254 33107.5737 41643.6121 30327.9565 36515.3525 394754844 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Actinomyces massiliensis F0489 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 6627.6664 29656.6087 6042.5463 5042.1277 5091.0904 4268.2464 148230.0287 5314.0363 6984.9679 10283.2967 5952.057 5952.057 4498.1543 15151.8768 37264.7946 5108.6049 4677.8663 3947.4089 11540.9395 2868.2597 11913.3733 5893.7245 9710.4679 4300.0046 5045.7035 4322.6222 2439.3194 388566958 ppx Phosphorus Polyphosphate degradation NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 60488.2787 150995.5809 27831.6897 20910.6852 10903.9821 45516.6364 46290.406 28666.5453 31516.423 340128.2505 34073.6355 626043.8995 36348.3448 55963.4361 134984.6139 51439.7207 51439.7207 28391.6189 57173.9827 19607.1363 44594.8782 120326.808 69846.0571 45111.324 56778.9728 37935.293 52540.4846 158697.3445 130238.5903 74226.4799 27979.2292 26874.0646 69640.4282 23991.0724 96971.8425 332377411 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11253.0205 9213.6838 8220.1326 4811.2009 3590.233 41316.8369 18856.4553 13659.437 244767.6643 10334.8831 8547.4383 6268.3305 4301.3912 4301.3912 17885.6887 12011.5364 13693.7517 9418.2974 12601.9115 14155.0098 3351.662 6005.2068 11343.876 5791.4463 24039.6697 22734.1038 7624.9021 7899.4658 8452.3993 7325.3737 9922.6199 8772.7278 225043073 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 287963.035 20538.0742 155051.7953 184002.5034 268377.3691 42120.2441 795993.109 157596.5533 101322.6789 205188.4284 155551.1875 223093.2084 2702338.0722 188421.5634 234384.7247 494141.7255 297802.3837 297802.3837 122586.2381 339094.2382 161802.6323 210245.1074 174411.6533 209485.0937 107893.1358 220893.8429 142287.3833 119301.5828 420600.8242 268425.5122 181596.6651 90651.0321 135560.9275 128000.2696 119761.6448 178169.9313 144947051 cellobiase Carbon Cycling Carbon degradation Cellulose Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 5313.6326 5584.6837 30234.7684 8639.0984 4141.9028 3722.7079 2544.286 2544.286 11220.1616 4600.741 3306.1008 9031.063 4110.7559 4945.8493 4323.4605 2489.058 349789078 PRK Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 33006.8246 92703.2963 17887.2364 75397.2458 6890.6217 58764.4331 44016.8796 52011.3904 28726.6504 32296.2988 95865.1093 848131.7419 32072.2834 39739.0993 50347.969 16387.0885 16387.0885 20985.6985 51684.2128 22924.8647 36129.3183 57173.5828 676961.0735 20138.0262 39485.0965 44905.1383 32932.6632 117318.1468 49833.8403 46351.3289 17032.0981 51573.0885 47421.9099 28481.118 45285.8733 56908498 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 6289.6172 5211.0035 4548.0413 5610.0661 10129.8663 5834.8173 12084.9379 4396.9664 121680.5487 8604.5513 8619.7032 4999.8327 3080.4723 3080.4723 5046.8956 12280.8246 9375.9153 7254.5705 13457.3775 21758.7702 3896.6083 4094.5519 18019.5407 2878.8816 18203.7091 16058.4079 11900.4332 4539.8659 6328.1817 8196.7421 3803.6412 8258.7078 421953064 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12971.5607 5749.9405 14386.8834 11916.6437 5745.8258 13259.41 8409.1938 17425.5477 10781.457 11770.6835 5014.1406 178680.2384 13857.9971 7287.1465 5022.11345 5022.11345 9116.6425 17614.0714 10212.5191 12868.6684 18625.9123 19693.4325 5736.6519 6599.4385 20492.2178 24523.6344 15673.1467 17463.6266 7246.7709 7166.7153 10480.0113 6529.7548 18284.4795 77814270 arsc Metal Homeostasis Arsenic Detoxification Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 16637.9018 29393.5921 12031.2362 9767.9412 11931.5891 7539.1368 14077.504 6549.5123 5368.2411 10319.5413 12885.5851 15773.9132 201804.3532 16482.3347 15666.9142 11731.751 11505.6333 11505.6333 9110.4534 13325.3167 9717.7485 15890.679 16293.8879 15034.127 6581.5531 8957.3028 14152.5541 5533.7626 21071.4151 6013.0316 283901.8549 5664.9534 8467.3196 9335.5888 9632.1381 23897.2621 310764079 dehh Organic Remediation Chlorinated solvents NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 101280.0184 90874.7077 22921.6432 18775.2783 3554.4244 48649.9339 6211.0062 11418.7641 42116.4289 71949.9107 245345.6423 9233.99 23043.6682 43458.5214 9082.5166 9082.5166 9059.6762 34454.6643 9212.3505 11787.2381 60176.4324 7121.6136 10143.2224 15736.2588 27686.3205 12858.7463 53910.6712 15003.3004 20786.1385 11449.9843 16729.0659 18585.8995 11030.1021 21841.2246 222085487 ppx Phosphorus Polyphosphate degradation NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6691.0362 4506.5386 5493.8025 9514.4497 2587.0365 2356.9064 5026.6679 5108.7505 3848.5803 51892092 cellobiase Carbon Cycling Carbon degradation Cellulose Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 49667.195 29787.1222 33603.1019 429964.2749 82238.8617 16825.3831 99172.1816 37494.5832 25888.8814 45665.7144 52285.5256 33246.7479 1143107.0521 59972.6 120750.2203 39928.3085 31023.4017 31023.4017 29718.4744 60309.5218 36920.0755 45568.7833 44379.9764 270652.9309 23311.689 18234.4275 48952.656 101274.5399 76801.1107 43763.2963 51842.7915 29189.3907 33673.924 28530.2395 23311.2471 69319.2349 109675383 phytase Phosphorus Phytic acid hydrolysis NA Glomerella graminicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella; 69076.3157 10653.7053 47751.081 24708.7703 37696.6154 30240.2838 38473.3513 56285.2623 33156.9352 84997.5857 44211.9546 50206.8516 1878318.5356 58329.5294 61571.97 108857.8485 94732.9633 94732.9633 58024.4782 78163.0953 39075.4927 58694.4449 126881.728 34328.5721 43241.4739 34707.8138 54927.6863 58622.0121 120109.4134 42806.5627 60508.742 30943.878 46672.2816 74788.827 62220.5493 52782.4761 87281077 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14824.4203 9497.7315 10532.5618 445217.8446 4284.6094 6101.5306 25752.8086 10058.5824 148508.8498 11674.185 8132.4799 6737.0012 7929.8296 7929.8296 5343.5093 22544.0162 5808.5506 5949.6839 38429.8619 111407.6356 46193.8178 101264.0923 16902.604 9899.6062 41329.0453 76847.5035 14662.7496 8879.2032 31925.4286 9880.1888 7408.0921 11670.2507 378810499 amyA Carbon Cycling Carbon degradation Starch Mycobacterium intracellulare MOTT-64 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 591640.3856 40934.113 72083.8788 74002.6724 241693.5329 54972.8999 120959.3507 113772.9367 116068.8492 227877.5614 169037.6947 72747.1111 2912554.6628 103255.1073 838657.9407 140474.0924 88016.7101 88016.7101 66739.3157 113772.2262 82987.9974 477493.277 118487.2129 175320.1793 40594.4197 73144.0591 276158.9638 64057.9366 391279.2978 343988.9734 121057.8756 65477.0335 86060.8542 131472.3155 79959.8052 105157.6611 86555515 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5928.757 2561.6244 3309.6089 3841.5917 4099.8104 73006.0168 3715.3137 3880.5851 2415.1131 2415.1131 3110.7787 8503.0692 3634.7326 3643.9509 7116.5999 2958.559 2267.744 5299.5191 2325.9992 11540.4027 6065.448 3010.8264 3087.7067 4627.6945 2407.9009 4707.5404 90419809 xyla Carbon Cycling Carbon degradation Hemicellulose Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 6897.8793 15938.3908 8766.6119 19329.0613 13966.5913 5619.7886 8038.7958 2447.6267 7890.51 26141.7472 42780.4116 289850.8814 7043.5138 9156.2549 8954.0589 7545.7016 7545.7016 6211.2552 22498.2991 15126.0069 8790.9424 6866.4941 7117.6397 4939.1377 8957.8145 20229.237 25693.8608 31729.4414 11217.245 39290.869 4646.2165 11452.9085 10203.1918 5476.4966 85775219 soxY Sulfur Sulfur Oxidation NA Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 23876.9141 156016.5263 10670.2074 30380.9143 16346.0886 9254.0424 28786.0495 5059.0263 322037.5674 23274.6289 22038.6405 497720.7288 29243.7459 115486.258 33268.5776 24505.8776 24505.8776 9253.6737 28540.3057 16408.0066 46604.3248 14002.613 19489.5316 6170.3139 15510.2743 28808.4053 9094.3901 41651.5732 28940.5035 24994.7292 7464.2594 30544.0944 17208.6126 11332.3335 22587.0224 206678282 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 68068.025 20961.1951 14614.0221 7394.4692 19120.6958 14820.5169 16361.3783 17953.7327 30069.3454 16558.7575 1469342.8517 24283.5756 48291.7824 21006.879 11002.6163 11002.6163 20202.6877 39819.2103 27667.5312 43686.2003 26530.9663 28309.0947 18906.5865 19241.716 28602.0522 17640.9072 72690.2836 32091.132 34082.7599 16771.476 16870.533 17869.5838 19525.4457 45133.3678 299795104 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 7542.5079 63303.7621 29116.9032 5795.1185 4712.7159 4616.4739 5493.3736 38163.9462 9079.1189 142061.3361 14440.1156 8945.1726 12912.0109 13019.1143 13019.1143 6968.6716 16820.6871 8848.2754 6483.2392 10689.8348 11147.42 5623.1181 8974.1808 375089.694 4279.4207 15665.1164 7094.4794 15449.2348 7946.3166 6944.497 11445.3947 22626.7431 8172.4764 223587960 aromatic_peroxygenase Organic Remediation Aromatics Other Agrocybe aegerita superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 11601.5347 6971.3258 20446.4748 2456.5142 3531.3411 2908.6454 5394.7642 4911.0031 6348.9864 122508.1973 5202.0285 7687.1494 7026.7487 5132.35 5132.35 3254.8343 8561.6086 5028.7257 4631.7351 7013.9312 6069.9439 2857.5026 3376.9731 9240.8664 14313.6851 11795.4161 6496.5247 22858.5401 6463.7405 4970.1572 4741.3437 3280.6747 6312.4761 115423688 endoglucanase Carbon Cycling Carbon degradation Cellulose Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 62097.9653 42785.1618 16616.2367 11571.7494 34120.2135 11107.5971 44746.8625 37268.9917 40969.6638 38655.5218 51241.7161 37687.1194 889246.5475 31155.1602 45954.3884 96029.6457 26471.5811 26471.5811 24952.6847 62592.8746 38041.4806 38865.0516 80387.4942 78565.2697 31578.9809 25878.2554 340351.1811 68209.276 163418.8152 52554.3753 60957.4038 39012.76 37796.9272 68125.5642 40491.1252 147565.3725 342316504 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 7493.4549 9665.0027 42399.3539 2446.5255 3948.5218 4937.3153 3666.5298 80643.4531 10121.4757 3947.0477 2499.7052 2499.7052 2743.1167 10810.2502 10967.3557 4765.6993 4639.3239 2756.0023 68391.3012 7229.6366 14958.9206 5465.3163 3110.1141 4373.8644 3726.4656 4731.6392 6363.6035 167360769 pcpe Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 81116.9486 23276.0962 6306.0783 33494.7128 7294.3231 8543.9286 11987.5318 42788.4149 11250.867 35241.5614 197871.1006 106451.7554 13642.5352 24591.6771 23829.1451 23829.1451 17402.6863 35006.4488 13569.561 41757.9257 20094.8435 21149.4907 28724.2958 46754.6377 110283.3336 13222.8198 101706.551 33759.7599 31592.7529 30384.233 33338.8045 40502.697 14625.512 113802.6009 398317476 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 19144.0167 24467.1679 6875.9398 13135.2709 4825.2091 26908.5933 39930.7366 14057.9207 15317.0244 14522.7427 28111.0618 236377.5902 20941.6374 28282.7169 133951.8347 26442.52 26442.52 8703.0041 34762.7971 11005.2617 15044.3935 18477.0235 18265.4257 13384.7231 13589.2892 20464.2379 12519.6012 207989.2885 19167.8461 24031.9839 7797.4555 12796.3497 23201.7226 18886.4795 14824.9484 403310215 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5033.2559 40142.0687 5127.5248 4495.5241 7329.0941 5242.9838 3296.9542 95370.0472 11245.3753 6382.5741 7655.6935 9161.4529 9161.4529 2588.4042 9464.1184 3993.1907 4179.1072 5360.9759 3347.9081 20152.4387 4072.6347 8939.2639 7395.7531 6030.5242 2473.1979 4561.4631 4460.2902 2518.811 38962.2824 209967009 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 8217.3573 20778.873 12910.8401 17208.8898 3619.6603 22121.8499 294999.0937 3851.3697 5436.4407 5180.7455 106045.0654 106045.0654 2978.2173 11079.9344 3968.1602 8801.3024 3628.3259 7694.3787 4383.0914 12663.9682 13029.4882 6945.6813 3713.2966 3725.6955 4403.392 3111.0932 41398632 nirb Nitrogen Assimilatory N reduction NA Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 24337.3862 76446.2648 11436.7064 6894.7229 51017.7715 52186.9043 35341.9417 105001.2843 32688.5735 21183.612 467741.1015 23557.9319 40706.4398 44013.8662 34574.2105 34574.2105 9678.6316 43505.5742 19495.746 44148.0608 26881.0607 25570.7084 25068.2843 47099.981 27135.9178 39930.4332 90793.8932 34226.6369 119572.1242 27513.9844 78401.878 27581.7934 107493.6661 34677.0324 115384998 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 14041.9731 13905.2909 10847.218 18380.2772 43586.2828 13006.1803 17586.0006 11798.6234 6304.411 14727.8506 14994.0426 8018.9217 331245.4556 16024.0331 14624.3349 22880.0571 13460.1446 13460.1446 9697.7007 21455.9038 13641.492 12989.0061 33252.9389 17402.1019 238227.8056 7542.5082 21518.6404 7434.181 29918.4516 16293.9452 21764.9998 7358.4221 10948.2401 9878.7246 6449.9045 20264.252 296283777 alkk Organic Remediation Others NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 4797.1935 2432.5552 2321.9815 4046.2921 3151.2712 2386.1735 4141.2202 5893.8628 5412.7275 2345.8256 2345.8256 2869.6771 9820.6692 9789.7079 5462.0785 6253.9223 2568.9859 7861.4544 3709.6307 8579.7208 5289.0097 2094.133 2983.3037 4795.7149 2493.064 325267725 linc Organic Remediation Pesticides related compound NA Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 10663.6214 70212.3726 33245.6911 16226.8396 24041.4274 599335.0737 13225.9433 12400.3022 4992.4305 8958.9837 17765.3718 6620.345 321658.0256 22934.7905 16114.7721 23290.9296 6649.1123 6649.1123 10632.5655 26497.768 13443.4732 19478.9934 14261.2495 20828.9762 13910.7411 12891.1002 20111.0773 8081.4318 41961.4237 16586.0796 18375.8947 7790.8853 9762.0321 13208.5882 6893.5189 20854.2182 118733904 arylest Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 13521.7213 18907.8252 42715.875 3371.255 2525.9309 1835.7751 1835.7751 14797.2732 6300.8148 358639561 urec Nitrogen Ammonification NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 140908.3457 58451.7645 158941.0691 559151.205 501000.7616 140115.3617 488853.1301 222804.576 146288.1914 206036.8531 327724.1571 140296.3018 5067368.9821 381056.5516 264889.5408 574837.506 176451.8425 176451.8425 128611.2241 298721.1794 130044.8962 259773.946 529662.9873 442345.0279 93216.3024 127170.2678 219923.838 115682.6256 452779.1296 217972.3631 190811.2536 215880.9463 140993.8769 112407.7922 177418.5514 134953.075 307584525 pchcf Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 17214.1713 9709.5692 2754.1374 2799.5192 2469.6745 4435.524 4637.1477 4637.1477 8102.063 4080.9915 3292.7828 8092.0578 2614.532 4143.1778 35591.5221 2154.8466 3032.2551 5511.2469 2957.6213 10200.1767 358637688 amyA Carbon Cycling Carbon degradation Starch Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 67638.2053 11958.997 7983.6079 13024.8141 14114.1659 17981.6533 18652.5374 17669.4991 9167.141 13326.9573 21321.842 229624.1881 14706.2617 16685.2693 18073.7976 86955.9754 86955.9754 12124.2119 38893.0024 14557.9956 71613.848 23014.2009 24042.44 22207.3984 20832.1207 33977.1836 41769.9148 76453.1626 14716.7123 37646.9227 13368.7413 37004.9301 38366.2387 63588.5634 223920.9624 376261237 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 318614.5431 14708.5138 27325.9237 42603.3439 38379.1339 11860.321 31709.2908 428583.5418 11312.3879 34619.995 25128.3704 16536.5969 711685.0446 69687.6578 338660.6344 29069.4558 19734.3022 19734.3022 22912.784 46848.666 39692.099 533849.9691 24936.3129 41480.0359 20578.0094 23559.746 61779.9881 330358.179 59160.3585 45631.3414 45171.682 14106.2595 26122.486 26764.1501 80612.4267 32234.2799 218660914 badh Organic Remediation Aromatics Other aromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8481.536 5063.7769 5119.0273 4592.8426 5935.7308 5230.69 9154.5266 8878.5651 4781.068 110269.1402 7953.9984 7744.632 6211.6859 3691.2112 3691.2112 9545.5317 10103.6824 11161.6443 8672.5661 14846.08 14740.7607 7507.0161 5890.1454 13479.4517 4920.076 19987.8807 10234.6019 10249.153 3952.9176 7741.0071 7901.0827 5681.7382 14757.7687 119899342 ben_bcla virulence NA NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 10951.3759 4578.0103 3691.1204 6466.0875 3862.412 3181.1993 5186.5925 8963.4796 2072274.5926 4321.1035 8438.3698 17601.3013 6307.3274 6307.3274 6412.9157 14596.7194 4180.6517 18773.0611 34980.909 2806.5825 5157.527 12131.9208 3362.0367 29644.7687 15570.125 22480.4552 4834.9683 9918.6329 10117.2314 5547.0825 85824418 pgk Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 7959.2074 5347.6618 10010.961 8914.2762 4405.7339 14849.2201 4976.381 7752.7808 10222.2608 26553.3001 5183.2446 25243.5727 9240.4039 9240.4039 6333.9198 18234.7701 6295.0265 6654.1705 10334.133 16259.8784 4275.3539 15998.2373 11895.1179 7036.3082 19225.4051 28187.5789 10699.2758 8730.9165 10024.72 11084.8078 7723.6855 12679.5582 149210081 amyA Carbon Cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 26428.2178 4482.7276 4995.8556 1821.1501 5918.6692 297551809 tehb Metal Homeostasis Tellurium Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 6645.0523 6991.8551 4654.9244 7650.2523 3893.095 6230.3971 3415.4229 7000.0166 7932.0943 3554.509 115522.3665 7475.6575 7777.1948 2435.9231 2435.9231 6958.799 15689.9361 9852.9431 17347.5796 8143.5126 13568.5985 5068.7197 5246.4131 10168.5298 4275.6775 14563.0376 7731.6213 11317.5385 3608.4278 6002.8346 22137.3118 4622.0744 13142.4348 148273114 arylest Organic Remediation Aromatics Other aromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 7140.7132 11018.1368 9129.4867 2466.9228 9320.6216 3339.2963 105097.1629 11395.4972 4720.6086 16860.9431 16860.9431 3780.6023 8893.5037 9875.1043 5958.8731 19538.325 4704.8044 6804.0351 2517.6053 15144.3369 9270.905 11959.2914 2104.2944 4227.6143 6032.3625 3879.0878 312195272 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38118.8629 39941.4416 6911.2083 7246.6012 5483.4365 11966.4628 51045.4003 15792.6319 9306.6631 14169.0944 28037.1392 263431.2113 19390.5929 24781.4237 97123.1706 18277.0885 18277.0885 12028.8677 29577.0961 22789.5325 39374.2893 45306.2166 20883.3798 20592.229 19554.4233 18764.9691 20121.8443 46673.3313 22322.1561 31446.1972 10503.982 25542.2134 52347.8693 25395.9357 130831.3198 329847207 alkk Organic Remediation Others NA Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 9506.3769 4696.0324 5257.3148 3019.5836 3725.3313 2514.8781 5786.3881 6905.0297 8088.1504 182744.344 4220.9809 4210.8274 7697.7607 4402.6407 4402.6407 3059.6431 29031.2465 6450.874 4388.7883 10841.0556 9861.7151 3304.0859 5055.0349 11436.6692 7473.7407 32811.6698 6186.6942 11294.9305 6114.266 7868.7951 5127.1108 4514.6977 4358.8569 385866914 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 20491.2763 18092.0871 10355.3773 9744.9841 15395.6128 15114.592 34040.3828 15045.8525 18041.535 12120.7901 588854.17 20300.5334 19416.3285 8408.3125 48976.8875 48976.8875 11644.0997 27276.3832 16228.4715 18919.144 23031.6465 30741.3852 8549.8001 9970.0473 20467.0778 12368.2417 300564.2922 11664.3291 21348.6987 9801.8786 11174.7887 13318.3501 10685.4735 23116.5374 253576978 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 4044.391 7191.0575 2497.5722 2560.5334 2739.4141 4582.9086 4641.8754 6933.2544 4038.8651 4375.4796 2871.2293 2721.2136 6968.6741 1645.8856 259348444 dmdA Sulfur DMSP degradation NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9733.812 17401.0492 24371.2255 7733.8283 49957.3729 7870.7952 4398.9084 25029.7398 7988.1493 19941.9369 12212.6689 6836.152 196059.2926 10885.2856 10176.8855 11935.822 6970.3217 6970.3217 7374.8734 11870.5959 9161.752 4519.0795 9915.4993 6378.331 6927.8449 6463.0255 21318.1818 4716.4543 29386.5334 14234.7304 16802.274 6323.5994 21573.5086 10016.3698 4386.6326 7830.5993 92117282 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 4624.9624 665159.8406 8247.6909 5043.5929 5223.7722 6329.4347 3709.4132 11335.931 6616.9455 148253.9424 10595.2816 29276.9602 15696.0586 4337.2101 4337.2101 5355.1662 8755.358 6873.1487 5079.1588 7816.5073 9100.3139 5215.2503 6344.2156 6446.186 5650.7438 20817.3461 13043.4985 9780.2239 2868.7543 5528.3685 6967.2967 17240.8084 4751.8499 9951551 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 4698.0019 6849.1559 4096.2011 5720.5491 3083.8722 5688.8193 5772.5452 2662.1783 156984.9503 8241.9715 7613.4683 2351.3652 2351.3652 5094.0183 10565.2401 9017.9374 7466.9114 7034.5297 8347.8545 4547.9836 3941.3005 10932.3095 6579.4233 23959.1787 5246.6191 8272.0573 4509.48 5226.9252 5459.8925 4674.7798 13255.2976 151302200 aps_apra Sulfur adenylylsulfate reductase NA Desulfonatronum lacustre superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 73581.7194 33030.6976 73585.0295 30547.3686 53146.2663 11013.1645 28866.1848 35899.179 32921.422 41896.3136 40973.3484 49358.6028 1068404.3313 47548.2891 70169.0765 94740.9242 40629.1545 40629.1545 36195.1902 77377.2923 42916.103 50992.9387 351069.0157 62297.1326 32831.6671 27987.2737 49610.5209 58311.9688 132711.3562 38773.545 57074.2446 34032.3449 39538.5934 82637.7998 38520.067 64905.424 343804626 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 11942.5437 3992.4015 4993.8454 4560.3088 23103.2359 194307.3274 8150.8806 5625.7295 6844.6862 2809.5482 2809.5482 5094.0229 9679.8638 4606.2882 11984.0104 8461 3389.7232 4411.5723 7983.5957 2617.8588 13247.3483 4097.8487 6930.8935 3048.8032 3350.2859 7031.0757 2565.3085 6150.4157 257796609 dsra Sulfur sulfite reduction NA Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 8554.998 11092.2271 3323.642 4745.7074 2183.0871 4192.157 6275.971 3532.4369 97089.9055 6939.4878 6875.4937 6872.4284 4722.5055 4722.5055 3437.7137 11553.0698 6530.028 15195.1125 6855.0295 7181.9239 5986.0794 4138.8434 6747.0497 5691.2266 16071.6025 19134.7454 8640.7472 4660.7045 6158.7704 9268.9967 3480.2555 5298.0895 217501798 amyA Carbon Cycling Carbon degradation Starch Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 21953.3685 4969.4416 10904.8694 13063.1016 15264.7387 10644.2212 7982.8157 7074.671 7374.7076 17225.7859 4785.4612 202935.7532 10950.3032 18644.0071 5011.4724 5089.0528 5089.0528 9465.4942 18246.4443 12548.2946 16372.4432 13291.3971 13334.1328 8339.1761 7077.9052 12873.8701 7593.1381 30358.962 16775.9877 17093.9659 22329.5508 11100.9088 14465.5744 82199.0184 19369.187 223893343 mannanase Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 10684.4228 118791.0597 3957.9901 21528.4124 15551.0941 12369.66 8951.8484 26888.8439 132880.9368 8338.1701 22459.898 47945.462 16193.4765 16193.4765 5662.4712 46663.8026 8232.0697 24483.4732 53280.4248 52277.1516 6456.5174 51146.0469 20441.0649 9405.6837 107554.2856 9026.6767 20280.2943 27165.6644 9123.446 10102.7455 3909.4978 8642.6142 357078581 mannanase Carbon Cycling Carbon degradation Hemicellulose Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 10945.5767 128073.0974 15743.143 12222.1058 17069.5799 10338.695 7099.7903 13430.8555 9907.8951 11444.8091 230547.7306 13002.2499 13512.8423 5007.6213 10904.875 10904.875 9497.0872 28418.4465 15702.7497 6764.4377 13562.9756 11519.3656 9564.7921 11234.4007 12577.4016 17093.551 50369.1441 8141.0664 12703.5891 6517.7755 35319.4732 16635.7311 6370.97 74935.4142 353189713 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 272487.6699 161369.9551 145300.8921 229067.8416 1144766.4998 159391.834 612537.4986 254563.7105 601414.3313 365610.9288 309423.0976 207820.1444 3623675.8798 369251.6705 275801.5367 917964.7417 191645.339 191645.339 265034.5942 285212.1067 131230.7232 368942.6148 312735.9072 260826.5033 107824.0126 129778.3854 241040.8761 111986.7604 460832.7225 218067.0151 217184.825 403163.2904 157798.4228 179584.9921 137808.9631 299794.2064 357413794 amyA Carbon Cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 239040.312 41442.6268 215228.485 119840.9998 103216.0186 20561.162 64961.7037 132631.1818 30385.1192 86521.2559 38924.4631 49284.3182 657315.8695 260370.2289 139820.1914 154071.4249 94228.9312 94228.9312 54327.1141 173809.1437 46958.3181 44675.671 77565.1778 885479.8292 50846.393 45801.8248 64277.2649 49703.0211 183728.2668 35074.9196 87361.9686 22041.069 75033.0111 44246.1717 58270.1107 84063.9138 86160543 amyA Carbon Cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9034.3 7642.0891 8932.6776 5321.2464 7065.3946 4446.5384 3453.7628 80831.4884 9516.0234 7416.7004 20488.4155 6971.7846 6971.7846 6276.9667 11389.7251 11027.4156 8840.6645 6925.9031 10201.9578 3410.0373 5947.0475 7483.2929 3198.8591 16659.2768 15289.6545 13106.6511 4153.915 9059.4061 7486.7639 4965.7126 7001.1004 237858249 GAPDH_Parabasalia Other Phylogenetic NA Gigantomonas herculea superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Gigantomonas; 15792.4442 6168.8309 6538.428 4668.0833 161645.0775 2471.6968 5798.1085 10126.9147 4924.9789 142142.4873 10359.3844 7934.2017 5490.2846 6172.3734 6172.3734 6189.185 14355.8319 14324.3245 9433.6926 8990.7082 9551.4042 3633.0108 5453.5853 12523.8563 4563.3684 27043.5873 9540.9728 10694.4434 5233.4021 6299.8387 5267.8033 4813.2451 11453.7368 149919935 nbac Organic Remediation Aromatics Nitoaromatics Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 15498.8527 19374.1168 11048.0587 6178.1709 14237.0331 138812.5593 4675.7317 15196.8727 8583.3272 12651.0743 20562.9483 35786.1068 161265.8405 591097.1237 14053.9442 12161.2019 22002.0626 22002.0626 13161.6242 19800.0546 16208.2446 56092.9384 17522.9951 11590.955 8238.0467 15638.8992 16156.3284 20532.0852 60720.5206 31108.8385 41133.2856 8781.3393 27854.5028 79431.4434 7894.7205 16766.1269 747874 ligninase Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 104619.2959 549062.9782 11191.6464 8095.1522 139619.0998 5231.9459 2593.7278 2593.7278 7947.5128 3587.6374 6525.7491 4073.2772 15255.6207 2419.2809 3465.8844 6969.7095 64782.9464 3731.4198 18777.5138 2896.1331 148224.4122 3757.2852 391859946 catechol_b Organic Remediation Aromatics Other aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 20896.1793 762559.6362 241958.39 31827.0293 69565.1465 55680.8571 9368.7975 61969.5582 6872.5608 11524.2123 17402.0302 6380.9974 201790.6422 15968.8307 18596.8196 16795.5897 8625.0857 8625.0857 12139.9226 32814.1286 43173.6182 24757.3999 34044.7756 14681.0867 10393.1114 9810.0606 493917.7917 13413.9365 73807.7876 44115.1538 39477.3634 33609.6951 123908.3455 25725.4267 7390.1365 17762.5158 146338092 arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 28035.3874 35608.3918 34308.9252 53239.5175 8400.313 46219.6896 19486.987 13538.4028 16459.2898 22581.9195 27247.1157 472151.7807 27923.6394 34133.5431 133510.1323 80129.6146 80129.6146 11274.635 23965.6699 17354.1737 73515.8736 19429.843 58932.3078 13229.7195 65563.8271 45073.9663 22587.401 136256.2196 26678.9044 35955.2345 16995.1316 29584.4681 14238.4745 56159.7457 25398.4265 86160229 dehh109 Organic Remediation Chlorinated solvents NA Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 8934.9124 4813.6939 23253.5282 7802.2703 1707.6194 9377.1342 3295.1847 37203.1698 10551.192 8621.0488 146026.3672 14984.8528 17694.9433 12823.7549 20235.8983 20235.8983 3546.0897 15287.8702 11748.7367 12090.2848 14983.0886 19157.4302 7359.855 13221.2565 10652.4841 7398.4345 20926.3356 14976.614 16154.513 5391.9236 8616.3392 22703.3686 13021.7436 15724.9182 227069643 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 57520.722 25058.6862 11805.3779 18104.9521 5212.7186 10452.294 13870.1111 44985.6997 13659.3231 27324.505 34173.1911 352924.1679 30607.2592 55026.8715 42304.1547 39120.234 39120.234 54200.5104 50601.1857 138094.3627 51995.2977 61411.5632 38200.7363 47787.1058 17759.7545 20146.829 24826.722 56168.3344 42634.3096 41745.302 9811.0117 36159.3016 39092.5171 30510.9379 16719.9507 108765029 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 7820.4627 20049.6344 19618.2272 4328.7727 6828.975 2669.1945 3753.3048 4860.9059 3228.5152 3228.5152 5742.7642 8244.9174 8198.2345 8801.305 8355.1936 8695.6458 9566.125 7276.7034 10578.3591 2982.9229 12124.3627 5176.9985 8442.1293 2438.0304 6221.1888 7082.1006 2615.8658 5570.9613 359363407 terc Metal Homeostasis Tellurium Detoxification Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 14605.7607 4646.7185 9094.8496 7186.9746 5334.0687 3427.7562 6109.4845 7876.9008 16670.3487 130359.4926 13484.8424 60978.3917 10366.0918 9529.8518 9529.8518 4632.9046 16105.1524 6481.3869 8722.2294 10574.3218 16169.2542 5655.7291 4975.9803 12249.7854 6466.6672 20190.4423 210570.4584 13430.432 9463.5982 7459.6513 13279.3206 7892.6822 8797.149 323529399 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4053.0932 70103.2116 8036.8671 3582.1363 11440.599 5139.6716 5110.1043 50416.1518 4541.1361 124184.5535 6515.9397 6688.3184 4553.5787 3519.8902 3519.8902 4139.4033 9333.9215 7723.1474 10051.8972 15606.8777 4523.0585 6197.0001 7710.7989 14138.1369 27684.5985 6627.2291 7220.5506 5255.8211 8815.2244 15383.5674 5554.1488 12080.9609 290571962 tehb Metal Homeostasis Tellurium Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 4776.0074 5045.6842 6253.3051 89718.6365 9070.857 4196.2812 10413.3084 3981.043 2346.2677 4946.4251 3618.7038 157145060 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 13971.2554 9282.5503 9567.7034 10707.1155 8734.3663 11078.432 7019.0409 11038.3085 22129.7616 7603.6722 149291.1486 26832.1587 36778.9954 29554.5209 11258.2851 11258.2851 5814.0755 21970.0999 47599.7964 13029.2341 15424.7084 14628.1561 5802.0253 9204.8153 10463.3696 60715.1118 31168.028 9016.3812 40318.2834 6649.183 9402.569 48143.7123 7103.9263 63765.3769 313158567 gdh Nitrogen Ammonification NA Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 5676.4533 4543.4845 7851.421 8160.4802 9671.9181 2915.0008 4357.5203 5066.4922 6017.0696 3744.2046 97170.9845 6031.377 14538.9545 8690.5087 4395.6097 4395.6097 3824.3608 15455.6079 10475.8039 4180.5382 8499.5731 7419.6388 4004.4726 4554.6809 10949.3327 2870.0214 23342.4437 7364.3454 10633.2583 3632.9046 4397.2881 6285.7359 6045.6923 39935681 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7875.7898 52844.7438 2608.2893 17621.39 2008.4726 4880.1373 9556.6698 3331.8065 5980.5531 9875.3621 4684.7748 4684.7748 6772.5423 5574.9944 19392.9039 2685.3612 5747.7217 7524.238 2907.732 8590.177 7369.0694 2529.7924 7939.0027 4065.3594 2494.9552 4372.2357 256361016 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 32719.3471 9382.4134 7239.5693 8775.9867 17091.6841 14117.9528 17907.9205 170812.538 6363.7399 11055.1671 13401.2211 15996.4194 15996.4194 5788.7268 30714.2455 11063.5185 9483.9509 22649.0576 6018.7851 8057.5632 7067.442 9666.8738 12429.2063 31709.2465 13048.136 13207.8729 5774.755 15791.475 9374.8917 8255.9216 8499.4889 89513034 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4426.0811 2237.2776 4433.0512 4407.6512 3776.3806 3200.7884 4464.656 5654.5259 6038.5516 3235.0434 2838.1669 5715.9461 6595.3959 4319.0998 3138.8821 2827.6603 6362.6858 315504334 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 203291.6696 12336.5271 31928.4818 10868.4907 5730.1938 30906.6551 32529.571 41386.5785 21952.9216 23650.3564 33665.8243 693695.1222 19274.8067 22246.8688 38727.7051 20706.7266 20706.7266 15807.5294 47937.5266 23358.4161 49082.6544 22291.5412 26342.1386 27706.329 14653.4015 34832.4222 27021.0602 86229.8702 18985.8495 32541.0881 13580.796 25235.9278 22683.0566 11575.598 24721.0256 388264548 catechol Organic Remediation Aromatics Other aromatics Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 15017.4465 43995.479 6864.4307 11428.0354 38609.6214 7042.658 28804.2949 15806.1336 19677.1297 9045.088 18942.7181 16921.6296 238686.2322 16722.7168 26448.4997 20823.7082 15523.9665 15523.9665 7531.0815 25045.8393 20345.6967 14759.0211 16138.6589 34069.151 14999.2811 10897.4649 26693.8213 7908.8864 43184.6524 28137.6268 43313.4356 22892.236 25648.422 22876.1652 11348.8672 15253.2273 302420455 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 28944.1399 2870.8164 3079.4407 5289.6879 5945.0236 2333.1823 116374.4097 6882.9235 4654.1499 5062.3224 2912.937 2912.937 2710.8491 12654.1367 7289.1387 6156.8943 27782.9149 7241.4236 3032.5705 3609.3328 7665.72 2391.4998 14047.2218 7382.6682 8182.4501 3106.939 4685.8263 4388.7332 3161.5706 7401.6813 40788416 xylanase Carbon Cycling Carbon degradation Hemicellulose Scytalidium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;genus:Scytalidium; 4585.1208 7389.9122 4581.4883 81699.0076 1968.4963 1968.4963 6010.9025 4440.8906 2559.7304 3210.1384 5270.1286 1981.7675 9082.052 4646.9691 11614.8994 1999.9919 3372.7783 6111.8158 61220985 tfth Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. PNP1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 19500.541 11980.8312 49820.7227 18515.1165 24352.7237 13691.7531 18846.0161 22777.428 11705.2263 20528.7995 45200.4534 20667.2063 579648.2541 34425.5453 49348.6018 23485.3704 28756.0315 28756.0315 11577.2113 30715.491 26405.1337 45254.0756 23783.0227 24053.1989 14352.5374 15286.9391 26711.9416 26087.911 73319.4604 34031.2185 67176.5742 24785.6361 19678.1925 120413.7586 15703.7974 26996.1379 45386111 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 13085.1954 6975.232 20364.8453 7675.887 8052.9247 6353.3941 8200.8055 10916.8601 5869.3694 207259.4378 13187.1235 15412.1761 30185.2291 7051.8677 7051.8677 9368.7395 24488.7712 9953.1246 19026.4752 23331.9823 17732.7854 15977.7987 7567.8874 13167.7541 5734.8931 28902.31 23122.0298 39045.9295 7232.2861 9803.5998 11217.0191 16597.8611 18487.1025 363406451 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 18701.1165 10883.8921 7891.338 6344.0565 8472.9191 5308.5157 10102.2535 12475.6752 22991.8253 19604.1202 10436.2235 6759.2665 276644.725 11666.4301 14548.518 15375.786 6998.2287 6998.2287 23130.0746 27776.3329 14049.4726 11691.4305 57837.1147 26146.9279 6799.2781 7238.1726 18403.5293 12948.2803 61124.3246 11943.9664 16463.9823 22730.3515 19668.5813 50765.3352 12357.9252 13516.5924 329119356 cysJ Sulfur Reduction NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 13723.5568 2812.9988 5723.7604 37548720 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5245.6546 8179.7381 15287.9999 3099.0156 8243.4512 11601.623 3056.4844 5820.6047 5820.6047 6416.7729 5695.9927 4959.3564 5203.1779 13565.996 3621.2684 5892.29 5025.7718 11229.9964 15863.278 2624.023 3862.7951 4467.3295 5038.0322 337269987 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7491.7267 5773.692 257566.2812 7012.2863 4714.934 18687.6246 7330.5876 8932.1319 94891.5678 16043.288 7438.481 5803.3939 4556.8552 4556.8552 198206.4452 13425.4175 9218.0399 79280.9179 7499.0388 6953.4285 7654.3623 11050.9266 9389.1708 6321.3244 20145.3837 8234.8556 12332.8615 8640.7121 7335.1112 7696.9049 8332.8561 8795.4956 292676220 ppk Phosphorus Polyphosphate synthesis NA Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 3999.8466 4385.3592 3982.3821 28673.2813 28673.2813 4114.0537 4875.6368 2945.5271 9230.5469 119211.148 5493.8588 1718.5237 3090.5853 5533.4244 147847559 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9578.7814 11304.1797 2888.9919 3269.7905 2247.7506 4806.4669 3828.1533 5658.5558 121399.9294 7016.612 7499.014 7781.0413 4832.5594 4832.5594 6314.1888 9752.1423 7419.2289 4623.0422 20180.7063 6198.7579 2994.0355 5176.9247 12048.1349 3373.7543 13252.1384 10917.8321 9962.1832 5793.6264 5733.0221 12399.2072 6429.3959 9490.1286 312602325 cdh Carbon Cycling Carbon degradation Terpenes Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 3804.6062 5840.47 300590657 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 144977.0821 11645.5385 26617.3687 7985.7691 8826.8503 19315.2905 19081.1745 8897.2114 12735.057 17946.7104 39008.8049 312918.7361 30120.6646 17345.7238 23107.7191 17615.33 17615.33 10738.6728 18532.0822 18064.0443 11785.3271 23456.0041 18108.8214 8277.4639 11911.6183 29591.1886 10125.7604 46168.4492 16002.3226 34233.5442 11048.9554 12693.8048 17083.0185 6765.5659 20772.0619 337280093 dehh Organic Remediation Chlorinated solvents NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 5520.6166 4914.4825 13473.845 23873.4981 6034.6835 3346.5243 5456.2533 5528.6729 6084.3574 4485.2105 8665.5402 4695.9341 4695.9341 7386.7917 10215.6296 4365.8095 5574.172 4824.789 10682.6893 6494.8043 2672.6614 9552.8715 4003.4932 12101.9582 7164.7214 9208.9623 4506.4891 5008.2482 6944.2684 3290.3329 85255.7804 291300559 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 5015.5686 41260.7776 2340.8785 3818.1995 5374.0484 5544.6516 5060.2679 2929.8905 14875.8104 2144.1871 350597427 pcpe Organic Remediation Herbicides related compound NA Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6419.3179 4992.2536 3224.0802 3029.5199 5393.4821 6133.9599 2495.9962 108578.4149 5975.0471 4374.9841 4632.6816 2857.183 2857.183 4031.6794 8492.313 7396.9173 6464.2703 9121.3334 4398.3074 3449.5193 2899.4657 7864.5938 3242.9505 8666.4604 8770.5585 7561.8543 4140.41 5467.9074 6456.0053 2664.181 7228.1767 154154537 tfdb Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 32553.3554 13744.7459 24359.3759 37711.8474 45438.2285 14082.8355 54003.9291 60969.5874 16457.3668 83760.4216 35814.0041 33536.8524 1599647.1895 53222.2201 73880.3866 234203.0126 91192.3024 91192.3024 57616.4529 45012.2464 29323.6496 28609.6187 43761.4542 45353.0604 20484.5983 20354.1094 39893.0785 27588.1537 65955.3294 21266.1713 39244.6303 21885.919 26813.12 28204.2225 51342.5155 47004.1023 149912870 dmdA Sulfur DMSP degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 26229.5007 43397.7347 9615.5601 12491.8762 35070.108 7990.5329 180533.1005 12441.3632 18935.0869 25064.1916 26082.0325 534692.9052 22128.721 19443.3752 89684.1314 9702.3973 9702.3973 15871.7787 35444.0907 17326.0918 37036.7557 18389.7861 17335.9249 21447.3842 23489.5442 16225.833 19140.7052 62101.4357 34742.1141 25986.7358 11674.5309 20399.4376 21761.882 14233.3702 34924.8557 67532854 alkb Organic Remediation Other Hydrocarbons NA Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 62561.6429 74339.0238 14930.3413 32995.7607 11084.1627 66980.3151 56117.8557 25150.463 19275.1927 24143.0117 35994.3884 530997.4669 30633.4102 38749.6424 73314.1619 31156.0397 31156.0397 43380.97 66554.09 27730.032 38482.9916 56960.7077 23320.1278 28239.9776 28048.675 23724.8544 70585.3663 84558.5326 46013.6603 37049.7652 22677.987 26883.0021 29105.3687 22339.7648 138303.614 109625739 trza Organic Remediation Herbicides related compound NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 42938.062 11468.5418 20621.5715 8612.1363 18275.0419 3437.2528 5953.1961 3934.6922 19944.4926 22814.4379 149533.3192 11141.5592 14865.2062 8722.056 27374.1622 27374.1622 3980.6707 25949.9341 6281.4381 14328.5499 17966.6238 8804.2473 6960.7949 6839.7908 9614.5197 9578.247 28534.0884 15261.9383 7983.1179 13358.0535 9004.2664 9509.8678 5933.1786 8605.8482 260650544 amyA Carbon Cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 102807.4198 11933.2488 34801.3447 52657.0482 83699.7466 20769.9922 20054.1857 57019.1519 18526.3666 25324.1807 53287.0532 28392.5045 830549.6526 93876.2909 31852.6534 43666.5836 42276.6874 42276.6874 16007.9749 141303.1402 31863.1615 187391.0977 28393.1674 28493.2284 13951.5458 27355.9507 37109.8191 24996.2858 59646.2034 87437.7241 38096.8988 30062.5687 25303.4071 20590.5068 109222.7311 34681.3606 73763012 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 59182.9182 12664.8089 75357.8473 44508.3306 47051.5255 18388.8109 65454.91 32550.9121 69747.186 395627.5966 79584.3259 29304.5583 748172.6093 84323.4255 67876.1802 61553.2411 25870.3274 25870.3274 26585.5381 56035.2483 35599.5897 41424.9295 64217.1684 42674.7664 32348.9363 21048.72 39966.175 29798.6022 75161.5245 39449.1031 50019.5577 22427.016 25981.8422 356690.8443 21821.757 119965.2719 397732271 badh Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8546.514 116113.7274 11681.0852 18442.5067 14032.0309 4228.1678 11300.2573 3295.07 12286.565 35638.7482 4704.3756 320838.0451 13342.4898 81882.3593 64149.5215 24826.4653 24826.4653 5868.1089 27108.886 13106.5989 11506.8811 55553.2794 10960.4801 8877.4616 13945.8679 18591.533 11314.0273 33179.4317 20251.8719 15225.0596 9478.2546 16915.0048 13933.5333 6019.6876 11519.1743 197330028 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 23388.9427 17378.0598 13429.1552 12122.0697 10865.3037 26270.6743 5725.5238 12737.43 38248.6912 18076.9253 234811.9739 17764.0322 17555.2187 10679.2282 10096.9497 10096.9497 10192.8361 36555.096 17582.0037 17477.9959 35501.4333 27084.441 12995.4185 12024.8829 34474.1675 7069.5508 50027.4618 23747.0551 32045.1945 7239.7877 13270.642 16033.5002 14290.0526 18498.1311 312168091 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 16725.2641 2240.3821 2682.6478 4607.3984 2886.5611 205086.4151 5828.3278 10052.2187 10052.2187 15735.6903 5382.0472 4850.1932 6959.2942 3926.5947 4073.8453 6724.7501 4491.655 14585.6479 9313.6714 7003.7524 3393.1545 3895.3263 4381.6627 7800.2288 5400.3315 270298544 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 5707.8396 12929.7585 2888.4475 3060.5738 5243.1304 83289.1547 122475.4436 7748.5617 7005.8325 5375.3444 10622.5759 10622.5759 2774.5196 12377.9684 20458.7505 5227.9814 4722.583 3658.7811 7426.9665 6676.6013 11655.8765 18467.3801 17185.9558 7417.5866 3947.4078 15260.4914 17305.5943 378580098 cellobiase Carbon Cycling Carbon degradation Cellulose Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 21544.7697 16259.757 19507.1341 22258.9492 21139.6867 10293.028 17627.8924 15250.4886 13119.3187 14668.1801 25124.457 9668.1056 569351.9497 23445.7423 25227.9847 14613.9142 9781.883 9781.883 13796.9474 27331.513 23618.3966 24352.2035 38736.6364 35035.5239 11021.4089 11193.4049 27211.153 11101.1527 46859.7611 24386.3522 24416.1668 13406.9944 18292.7388 18990.508 13301.9463 32755.9347 334365082 amyA Carbon Cycling Carbon degradation Starch Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 10343.814 11078.9104 6976.2501 32434.6444 9001.05345 8124.6868 34491.7192 4293.4444 2264.5826 8007.2146 11017.6209 6504.396 192118.879 13870.444 9775.2597 8362.4484 9596.5086 9596.5086 6782.9606 34810.0058 8536.2381 19026.2412 35402.196 5946.7049 6553.2321 4685.0834 8932.1197 13072.5112 18556.9864 6624.48735 9478.9766 3786.9489 7867.1465 8096.275 5649.1094 16550.3401 117959694 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 9335.1212 5435.9125 5202.3283 5420.2136 11744.5032 4659.4281 6471.7306 4162.2133 2416.3251 10995.835 5449.6771 6917.7616 3565.9383 3565.9383 5002.3741 26348.1843 8460.3294 8649.2283 8264.342 6636.5402 11198.3328 4312.9249 8003.7822 5690.2564 17871.8146 13335.9187 10715.7431 5635.583 6555.959 12747.6071 5223.1227 9269.952 257797893 tehb Metal Homeostasis Tellurium Detoxification Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 15016.0431 16907.5508 7252.8293 14683.6987 9461.5499 12040.4126 8622.1539 9882.1269 10957.4367 12427.8865 7807.4598 316927.3995 13653.9209 11155.8684 8684.5071 8820.3916 8820.3916 7022.9199 17333.2416 13047.1808 1348925.05 16730.6479 24812.8874 6366.7333 7478.4624 26488.6183 6483.5395 37101.3268 9119.1998 15145.8687 6884.1956 8676.7549 7795.3453 6668.7528 20592.8921 164456102 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 31582.1628 21896.568 4212.4303 98701.8105 6059.6514 17132.1615 13370.282 44500.455 5812.2547 10307.5542 11820.865 128399.2145 8969.9113 9116.7926 7842.2588 12260.3195 12260.3195 19808.0252 7751.5626 11558.5075 7664.782 4009.389 6504.3659 14962.472 10111.37 9810.2362 34516.6494 86632.0557 18173.5954 10122.6578 15364.4109 9860.207 13086.965 197269.5218 284988877 linb Organic Remediation Pesticides related compound NA Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 8015.4884 111309.3578 8669.0419 23045.8102 4933.1743 2736.2041 503984.5 5168.3267 11618.554 8712.9555 7912.7479 170492.239 8061.0459 8319.8903 9663.9007 17923.1735 17923.1735 19912.4086 13425.1682 7004.4329 10642.6176 5642.4737 10103.2391 10129.0508 6091.3589 13256.8928 44140.3516 41997.314 17230.3038 12248.5758 28041.0236 30004.9371 15629.1222 6947.384 49734.7314 317018546 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3895.1325 27166.2194 27166.2194 31605.5422 2837.9487 73763104 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13337.1637 7194.9517 2503.0793 2615.9357 4665.1394 9244.8571 7835.6836 241225.9243 6508.2874 6519.2153 5509.6346 8271.5363 8271.5363 4182.7749 20297.2979 6142.2029 5920.2255 11375.5044 7430.842 9566.6273 3456.9024 8091.1451 3552.3409 16211.9546 10481.7632 9401.5082 2805.1482 4722.4956 8238.7098 6174.6065 330808946 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 9946.6591 174446.5392 6803.9357 10180.4787 3529.8442 4909.8956 5510.9506 4090.7682 2226.5705 5444.6756 5403.1411 3531.3564 8570.8089 18814.1966 4599.5997 6499.5186 7570.4872 3827.5074 4520.9628 12177.5524 4774.9686 16549.7545 10461.1007 14398.8133 14890.9054 13384.7513 8167.3188 3710.6732 6304.4257 3157552 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9200.5593 332970113 urec Nitrogen Ammonification NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 6799.5778 6104.8315 12433.7499 16173.0464 8056.4378 8540.7699 7777.959 8944.1505 4679.5912 188589.4763 12433.9054 8987.1804 6725.3097 4801.4392 4801.4392 5941.2066 11341.9896 8304.6122 25115.6456 14189.0884 13168.2443 5809.1435 4110.0147 11364.9007 5746.4196 22558.6178 11815.4488 11581.638 5481.717 9659.0725 8368.3967 5874.6814 11435.2556 349583547 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 92116.7748 14918.9907 63575.6022 41309.7947 66594.9151 28334.9129 35619.706 50066.3422 51184.9787 60136.8849 51206.0465 58239.6048 1049897.4002 56993.3323 105687.2187 68969.8959 69805.7752 69805.7752 28473.334 65918.5302 53906.1104 57024.8573 117468.8246 141935.0217 140908.6604 49688.4282 64298.9328 27383.1477 175856.4158 88090.369 67236.6094 43601.1484 64381.8116 51696.794 22940.3957 109847.6534 89071318 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 20288.1102 13889.3025 27987.4828 29349.5965 17452.0631 48408.7174 15688.2324 26763.7808 20265.8818 18785.0898 25599.6924 145714.4904 18590.624 20963.5454 17358.5451 20738.5629 20738.5629 23820.4059 48578.5414 19167.7267 16942.7995 22196.1116 18697.9786 20538.268 8741.0603 18690.9828 43644.5799 44341.2971 58601.9812 50142.3811 8259.375 25639.2543 18839.4927 11798.121 20064.8023 391857729 exaa(moxf) Organic Remediation Chlorinated solvents NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 9231.8983 7140.327 15994.8242 15556.1406 9520.1708 12825.4733 16764.1447 5377.3753 12776.9123 21652.8198 7228.2664 254167.7028 20004.8645 15198.3233 19971.8402 19932.3126 19932.3126 11434.3058 18542.6913 9667.659 10931.5446 16472.2076 9389.7189 4540.4766 8568.1452 15638.383 5637.3987 19257.6583 12460.9035 13825.8379 6097.9801 11754.7731 13614.9826 6677.2614 12161.8025 209500047 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 32612.439 12714.5568 30829.6192 14525.7344 9590.5431 14647.7255 14009.989 23291.0102 33876.2413 25612.0678 363932.0763 350922.1772 17043.9575 32412.2905 91137.3764 30917.0543 30917.0543 5657.478 71486.9728 17990.6228 32238.2236 35168.5401 18245.9802 14734.0909 17350.7574 14864.4667 18344.2902 79415.3747 68417.144 31474.073 14257.8494 53315.8256 21520.8654 22222.9107 26788.8981 66801933 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 16845.0934 11547.2367 4607.0474 9055.3984 36296.5533 15376.0252 8175.8345 4819.3269 233557.5196 5372.5375 8614.54 7583.6261 14380.6541 14380.6541 9650.6667 10866.8732 4302.7022 17023.705 10939.2381 4562.3633 3495.0575 5426.6537 9536.3461 14798.4802 27695.7024 10784.5933 12594.9786 3890.4604 9045.2533 13927.9635 29154.427 12694.1434 269211194 mer Metal Homeostasis Mercury Detoxification Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 30174.024 7242.8418 37925.8959 3609.7431 35164.9739 7078.9819 56658.2346 60031.3477 39310.8489 126535.7829 25209.4383 26116.0969 18072.868 16553.711 16553.711 15311.9433 37381.9548 6635.9155 18802.5204 200109.3622 212178.9623 25109.2552 30332.3528 23018.9914 149893.8076 179443.1508 28923.3188 23924.7978 12970.7196 36873.978 48623.7576 23073.4743 57264.7713 288895439 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 9813.149 18220.9682 5392.6388 7297.789 3688.4877 9670.3514 13248.2091 18149.0324 229744.7664 6160.0308 4417.2655 5931.257 13753.7403 13753.7403 85257.4948 25562.2363 7692.1189 6375.8954 12604.6264 8181.7209 5133.3161 9351.1513 11126.8403 9310.1291 22304.7964 16204.1095 14077.1491 4324.7312 41476.2748 6890.3597 8171.7041 8726.6097 356690432 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9723.7567 10390.9547 3671.8708 5150.5652 6123.2399 2310.7792 2310.7792 31172.148 8964.1406 4834.1554 6200.9712 6650.2333 3664.7543 19868.4255 2629.2057 3300.4837 343523645 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 12734.398 5496.8978 11241.4776 22506.6989 7796.3443 6010.5953 31507.9848 13757.0584 550430.4822 32137.001 9833.8422 20707.0616 27938.0589 27938.0589 5675.5236 20060.4023 15203.2177 9932.0061 95405.4181 5871.8461 9628.9805 9926.5693 13156.771 61341.7528 17734.9232 14697.0044 48353.8196 7282.3878 27785.3197 12202.3757 37947.4277 31074.2024 380735493 arsc Metal Homeostasis Arsenic Detoxification Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4820.1765 30472.0689 5793.2109 6847.5232 13721.8813 11683.2615 120396.012 8210.7882 5212.3278 3657.392 3657.392 3414.0683 10319.1713 6066.36 6537.2459 20859.8743 23134.4758 7787.7057 9738.848 2871.0468 3462.7287 4939.9233 5106.5062 115401928 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 19497.6372 10732.0719 7444.5587 48503.3921 16939.5955 24671.5481 13430.5881 15908.974 18229.887 403553.634 9143.476 27974.6512 20055.7427 54393.8603 54393.8603 8655.8258 18702.1549 11508.1558 19028.617 26021.375 18927.3975 8232.8807 13154.0974 25994.349 11118.2448 34749.3737 23675.7625 22309.3107 11731.5019 8971.9755 30932.9446 9749.3288 18513.2181 291420600 amyA Carbon Cycling Carbon degradation Starch Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 11082.0169 9923.9869 7216.1567 3819.6725 5097.3654 4084.9833 8173.4387 9396.6333 4070.5928 104786.7024 65518.1661 12747.4742 37431.7631 5718.1361 5718.1361 7524.0944 13235.8043 8778.9988 30641.8178 11404.2619 12048.9104 4394.709 5258.6845 11287.1004 4619.9354 14595.0818 9977.7239 10773.2835 8206.1151 8258.2022 9157.7701 7215.5619 18644.2238 325128259 cysI Sulfur Other NA Neisseria meningitidis N1568 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 4420.4842 7777.7408 8875.0531 9732.7382 5936.5555 254431828 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 72384.5091 34128.6522 32791.0577 9035.2727 15119.8172 14144.3275 13435.9584 14145.2802 18481.9362 19176.7626 37733.5379 21536.5009 482606.578 14117.9054 96740.4985 24701.4482 21275.7109 21275.7109 14335.6309 60100.9244 18881.1453 25277.0122 53241.598 17521.2608 31860.8999 34528.3579 49868.9683 54729.6419 55343.4706 76430.9405 36702.0069 15778.783 44871.7638 29451.1954 20938.2283 63997.3968 7672528 catechol_b Organic Remediation Aromatics Other aromatics Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6807.7352 2574832.6365 620359.8853 4867.1427 7477.4343 6690.3263 4235.5318 6659.7832 5459.9025 3762.9117 134442.3982 10037.4368 6768.5707 5178.006 2324.3447 2324.3447 5364.5725 11514.5508 7885.3186 6561.9356 9623.374 8955.8049 3536.0168 3922.5857 8326.89 3376.6994 14193.5335 4664.9321 9074.8982 4409.5929 5665.5197 5561.5115 3879.1885 51675.6785 154151622 nifh Nitrogen Nitrogen fixation NA Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 25941.2685 37832.4896 34608.833 21263.4115 7589.278 20132.2262 18359.9269 13788.0983 15235.182 26453.3095 37070.707 860306.2452 26357.2552 26542.9504 20018.2393 21048.6762 21048.6762 16858.8061 37344.6272 25579.9227 37720.3047 65120.1264 28600.2598 15732.2563 14127.4748 34348.078 51356.1197 46861.6243 36467.2183 32152.6775 16669.1451 23298.5559 21390.3307 16558.5958 34107.0266 255301366 ppk Phosphorus Polyphosphate synthesis NA Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 4570.1562 5921.9935 6046.7997 5309.9551 3767.0155 3442.8546 4851.2461 3856.8831 2265.3376 104976.5812 6024.0894 5829.859 4249.4 2279.168 2279.168 4743.8926 9974.0681 7594.2793 7709.7481 8146.8297 5781.1664 3370.1572 5138.5708 9788.7094 3074.4024 14011.8689 9749.4102 12520.4666 3617.0963 5841.1387 6230.1441 4542.8444 8763.8486 154156025 chnb Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 44598.6108 15286.8342 6835.8992 14787.1989 13701.8658 25537.988 14373.3898 48384.3997 13809.425 21536.2315 34300.4605 196778.4554 12894.0077 25576.7111 20250.7954 9753.3213 9753.3213 47014.1722 31683.0672 18646.996 17569.0755 24319.3074 22733.9382 11117.6372 13336.3563 22906.7387 25864.551 82219.6857 47164.9304 26189.9154 15723.3496 45988.1685 42678.0828 42793.2839 24602.9852 119962964 inulinase Carbon Cycling Carbon degradation Inulin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 133256.7665 109664.1781 5056.8656 103783.5684 3367.4766 9599.4896 34214.1845 7185.4849 38239.771 11392.7382 71118.6689 4634.7681 9529.4905 13357.2688 6371.2112 6371.2112 10378.3249 28709.2106 5227.699 6838.5444 9845.1515 6450.2209 6793.9683 7446.8336 7876.8225 9265.2545 15450.8549 6959.8357 34455.2687 6132.0099 47284.4756 7703.6084 16581.8801 41016.4621 148244796 rubisco Carbon Cycling Carbon fixation Calvin cycle Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 4409.9666 9237.0815 5856.9239 3446.8398 5898.5962 6005.1228 3551.5837 179738.2383 6153.4322 6650.4051 2498.7425 2498.7425 4298.5825 9686.2987 7783.7255 4489.4669 8348.9305 11760.4987 4832.2265 4677.7621 8038.3647 3630.6042 15411.0368 6083.3623 8176.9623 4290.7596 11632.6997 4332.1673 4292.5811 10302.6574 296264235 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 285363.0322 36974.2284 412582.0363 241951.6198 140510.2213 63261.1073 60170.8844 93602.0342 82490.5133 200595.3106 199060.7501 232361.9867 2424697.5255 335173.0671 487383.2074 676761.4664 154103.5709 154103.5709 67138.3277 258677.943 84373.3571 98532.8585 223602.6538 211900.6108 69818.855 49953.8495 113542.2978 67982.2351 191451.3671 104883.5028 81608.4706 51295.2084 115767.337 229635.8695 68035.4375 224482.9706 29160313 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium tenerum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 7708.138 8438.5332 10863.6247 2795.7765 9122.1396 80861.6844 10000.4251 73302.7879 7227.3347 2700.6366 2700.6366 3147.9679 11059.8689 3957.3233 11922.6738 5325.1024 4374.7033 10544.9828 4123.0382 12248.7922 12228.4011 8526.3072 3099.8505 4149.2492 4193.8062 3039.7203 319638021 cysJ Sulfur Reduction NA Neisseria mucosa C102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 47734.3169 191787.1834 19871.0295 50262.7033 111627.1552 17599.8291 26190.6871 37789.3903 17339.7777 37228.4079 33790.2774 27331.8467 693317.3933 144506.0069 41986.4759 48871.8928 26938.7107 26938.7107 24016.1829 49590.5751 24420.6714 26836.6627 34835.5934 56393.228 57095.9654 41086.3671 41814.4071 39947.0985 323945.5476 55331.606 41992.1301 23503.2095 22392.5478 54700.3436 19818.3959 39560.974 158108874 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 15041.4503 9954.5806 4045.2611 17957.1279 2851.2281 15740.6122 5828.1008 8087.5691 9672.6865 6424.938 227403.6912 8950.2966 12147.8401 20395.2106 11716.926 11716.926 8483.2426 27703.9491 26398.096 14352.5896 14186.1906 6576.6045 6407.1667 9221.8811 15924.1046 4670.1023 25546.4561 11668.5695 17644.7082 5107.8815 6173.89 11221.6936 3291.5914 11412.3457 72119613 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 21455.0133 20389.4567 11070.6907 67586.1708 14887.5 7412.3604 17104.2506 60780.0228 9543.2838 15473.8633 13932.6028 54303.3037 319876.8934 22630.5871 16116.1397 12910.4965 25826.2976 25826.2976 8772.5216 15451.596 13386.949 12585.2567 22148.7852 18958.8995 23589.017 11343.9595 47820.5639 65066.5829 34055.8278 38612.0714 23062.2715 11691.7573 11542.6907 13453.0837 89581.3336 49329.207 319742946 tehb Metal Homeostasis Tellurium Detoxification Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 47314.9419 25197.0125 8515.9508 15855.9014 19247.9713 13989.2679 12976.8734 11415.1376 6955.2752 10932.1089 15599.0766 11262.3669 278542.0672 19549.2859 14540.4144 38143.8448 11356.4057 11356.4057 17919.972 13612.9135 12835.3644 15196.1249 26538.3917 18794.303 8676.8105 7587.2777 17536.1022 11430.2444 28866.8655 42182.475 21125.162 10321.802 10283.801 22190.8791 10725.8253 27020.9502 297570977 amyA Carbon Cycling Carbon degradation Starch Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 128039.4971 27839.0557 828599.5967 131794.5775 128423.0835 63040.1008 152784.5499 214508.1934 94977.9599 124268.208 319667.7109 118320.0809 2465931.7896 83104.1514 172925.359 102016.2856 97748.9187 97748.9187 54833.7585 90256.5134 82220.3352 84867.9605 170469.6001 210831.3616 78044.3577 55513.9193 83337.25 79237.1257 172536.6834 61296.248 99029.9836 59440.2354 77671.558 64323.0615 41984.2087 144793.628 325680042 pme Carbon Cycling Carbon degradation Pectin Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 87719.5348 5765.1536 2698.2591 3351.0108 2076.3887 5436.5427 7499.7537 3394.7508 84668.8142 7932.3578 3931.3228 3220.5225 3220.5225 3550.4371 10115.1859 7157.1123 6072.902 6633.0535 8726.8178 2625.2656 2456.3035 10840.4741 2696.9795 12282.8873 5419.6599 7473.5973 2543.1721 4016.5989 5249.8943 3290.2566 7406.9436 256422806 poba Organic Remediation Aromatics Aromatic carboxylic acid Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 5205.5763 5051.7037 17852.2912 4742.1894 4402.6075 2591.0096 3899.7175 7758.5311 217034.563 8079.0974 7895.5464 3764.3267 3246.6756 3246.6756 3808.3717 9354.5737 7709.2323 7065.0385 6725.2091 6709.8105 2590.6254 6525.2882 9390.4364 3739.7547 12665.0642 8733.8224 4901.5066 5356.1203 5219.0132 3467.7252 10798.8408 296444580 chitinase Carbon Cycling Carbon degradation Chitin Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 44285.2454 14538.6467 33048.4155 45444.5217 35974.6768 25668.7567 165663.2655 55670.876 36124.1948 41925.1144 82050.6609 49112.2042 891489.9955 59667.6871 54203.0255 40372.7888 28612.634 28612.634 30115.9284 62593.3558 499960.4116 49505.9271 110994.7269 65120.412 25040.5794 23492.8522 53896.0542 27176.3458 92114.273 898326.6795 72737.5542 30233.9054 47276.3987 32927.088 60169.1794 69204.2459 377560765 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 5371.4445 4146.247 27051.1821 3891.6244 4708.9687 89572.9725 5714.1208 4994.9912 3249.544 10188.4895 4734.9573 5735.7954 2760.3879 7989.6227 6478.8228 4937.8671 5150.1624 86136004 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 83820.613 21714.2046 85320.4879 88221.4997 78613.2535 24199.5613 101399.5252 49688.3928 116579.3662 54860.7888 73086.758 62412.6606 7248587.6786 97523.6232 199750.1293 84777.008 65559.7232 65559.7232 50079.5921 121750.9048 97482.9828 124779.9488 360809.3004 79188.7177 65761.8614 50790.2751 84459.2749 59712.0437 139774.2445 50402.2109 100007.2185 37582.9836 93737.2215 93206.4267 81805.5942 83930.3219 89084403 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12274.0851 11096.201 13084.1719 18376.3921 24858.0486 7501.0485 11505.5967 18688.7453 7233.4353 219151.5364 19866.0817 20597.7189 13706.4579 5783.3794 5783.3794 9586.7396 22055.4097 18061.1415 37568.9346 17471.7606 15513.6412 8031.4658 28066.7892 18681.7658 25993.7242 41582.8571 16441.5231 22600.748 9799.3235 15180.1925 31568.711 9655.1542 557015.8161 220721651 mer Metal Homeostasis Mercury Detoxification Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4368.1058 5658.9687 3008.4066 55590.6824 4702.1033 18272.5603 6897.7086 10571.8421 148264066 linb Organic Remediation Pesticides related compound NA Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6382.8465 382431.7149 35243.7847 4450.9191 3467.7674 19871.531 6662.1861 8640.4917 9792.5043 97760.2567 9532.3724 12639.2184 12304.7586 4997.6516 4997.6516 7469.1338 21004.9499 9089.5968 7126.8594 15596.6666 13919.0321 6514.7299 8879.9628 80657.1029 6473.6417 31184.2151 15681.3367 14009.2759 4154.1678 8557.4543 9246.7151 6276.2494 13862.8184 145221680 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 9166.8657 6238.3077 24660.474 4446.9675 2554.2508 2992.3633 146161.0264 2724.1914 148200.0315 5085.784 5315.9289 9290.8688 5331.9095 5331.9095 3489.836 11633.9429 5773.3498 4719.0921 2122.8082 4423.3721 11767.4848 2870.8171 10332.1499 9046.3896 9395.5389 28210.0451 5962.4268 7316.0313 388464734 arsc Metal Homeostasis Arsenic Detoxification Planococcus antarcticus DSM 14505 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 16633.6374 12252.3148 19173.0371 28494.6582 23225.5083 24173.5439 43669.7439 12511.873 22135.8429 124998.0363 12791.8416 3257918.1988 73226.9529 92922.006 18999.914 112964.2219 112964.2219 11889.286 55577.3687 19630.5516 13328.2459 22981.564 2723431.5448 11363.2299 25717.5407 27672.1647 22858.3767 57160.9479 63621.8934 29951.4154 20128.4819 23835.0608 21125.4007 21310.2748 55677.2878 126233993 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 11125.5797 2153.0909 5513.7254 4233.9272 4233.9272 6106.3411 4108.8076 4729.3846 6354.4178 2338.8312 2231.6181 8557.8239 1989.113 3877.1102 5016.8526 3040.9486 4843.1006 158523656 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5269.1385 9168.7891 4013.4428 2578.552 4452.3848 3985.5208 5952.206 3857.4758 9167.3792 8025.5431 5406.3163 7128.3568 2732.7339 7646.7418 3214.0508 15995.6596 11844.6179 9159.7746 4519.3993 4983.8568 6075.0664 2833.5847 139478623 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 11170.3551 20344.9921 14206.629 25461.6625 13911.1408 9132.9338 8393.6732 6607.4789 15122.4917 13053.6976 9845.4053 380814.7541 13485.2969 17646.2393 57237.1632 7300.7597 7300.7597 7788.7446 16537.2432 10430.6973 11612.938 12482.5853 27429.8607 4740.3378 8723.3846 15219.0763 23990.1015 30784.2806 8929.7019 18371.5809 8539.2142 20240.18 14143.5323 11515.35 16881.8309 77362680 catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12094.3254 5759.4877 3338.0114 12172.4168 6106.9641 6393.2443 72672.6732 22110.9655 843666.87 9031.0744 18739.6802 27286.7497 13018.9132 13018.9132 35815.5266 18719.5349 18439.6013 11735.4223 12933.1167 28850.0528 15248.2309 14749.5022 17652.0266 4375.9856 41475.8074 34868.9616 25448.9852 5202.0643 8646.2331 17629.4445 13023.309 10446.3226 206677815 phenol_oxidase Carbon Cycling Carbon degradation Lignin Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4114.0123 17691.0625 74664.5052 9616.769 2428.9538 2428.9538 8477.4099 4991.3025 6384.975 4883.592 3053.7371 15468.1514 9822.5818 5759.5073 6812.6407 3903.231 3655.5465 3739.9861 271966431 linb Organic Remediation Pesticides related compound NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 12657.7437 4655.8152 7510.7991 19772.4727 7247.7486 5585.057 5208.8714 4226.0462 8139.9366 13681.0236 5645.8031 284601.462 16583.254 14870.1409 10633.5828 6153.1465 6153.1465 6046.0679 18690.0492 9702.248 10832.3501 14730.3027 11010.8797 5991.5542 7997.5572 18623.3678 14580.8934 20202.4363 5875.7646 13942.9803 6014.3161 7601.0066 12455.6662 10777.1844 62189.3716 169126477 ligninase Carbon Cycling Carbon degradation Lignin Taiwanofungus camphoratus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Taiwanofungus; 54227.4622 17791.0033 3934.3586 9483.4637 99588.5602 3070.3856 34744.4849 4344.7356 8199.5327 4067.194 431034.9343 7912.8228 36537.8551 5381.8747 4729.3383 4729.3383 3907.6453 18366.442 8333.5385 10998.4778 10007.1394 11579.1365 5756.3263 11296.469 8793.3111 7839.4059 26485.3715 13150.0216 16433.0225 6068.7883 12277.0347 12787.8706 7362.264 6475.8874 254461693 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 35672.439 19869.5234 36269.3996 34425.0431 9099.8746 308533.4797 53247.1173 11691.3202 23149.5535 42677.4406 55686.2085 1082289.1112 76661.8063 42989.2151 31578.3882 28325.3683 28325.3683 20564.3454 71574.8775 384180.2254 42463.6422 57421.4677 24729.3781 13954.9652 37341.3664 95526.4106 31920.634 72477.0178 40384.3079 48419.2332 22965.6703 32574.8241 32689.4346 60934.4131 22424.93 90336061 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 328093.7391 20108.3103 7231.7624 3905.3615 3743.681 3740.9612 3546.2489 9671.6215 3141.2354 3058.6283 5145.0271 4923.3557 114382.1563 6331.5198 31866.9523 3962.7384 4297.7036 5535.5698 22507.064 3467.7236 6769.0629 9875.5645 7091.4909 35071.6498 6120.0809 9885.333 2506.4888 31532.1978 6794.8195 4167.6883 7531.9023 66801991 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 8010.336 8964.5738 3742.6591 46619.9556 4619.8509 5496.0626 4104.2372 18514.578 2649.5568 2649.5568 3327.842 42804.7082 5710.0674 7894.064 7793.5618 10897.4492 2832.8527 3341.1115 7598.3277 3275.6917 11877.5342 8596.934 8658.49 2577.1053 3842.4146 6709.4368 3021.2798 6412.6223 342316564 aoxb Metal Homeostasis Arsenic Detoxification Bosea sp. 7AGV superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bosea; 53960.0865 8239.8744 21474.8445 27156.5362 16457.6931 74560.7444 70681.4851 44290.7501 30463.1629 28759.2097 60906.6311 452851.289 38689.1154 29696.0697 193308.5792 67185.6217 67185.6217 39963.1875 86892.4531 42561.0916 46966.0691 84373.8801 49809.3479 54799.0117 52559.8354 56767.2826 82938.5352 142863.8064 60537.0926 73622.2003 47374.5425 87334.6434 76028.1102 53098.9871 74863.9574 403236912 ben_bcla virulence NA NA Bacillus sp. 10403023 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8473.5622 16008.03 5483.4579 3774.8963 3727.0931 7241.0044 118524.0308 4606.3916 5028.647 6292.4525 8360.5415 7100.8646 4272.6002 6522.9616 5693.422 2852.0707 7681.0191 3834.478 11978.0171 5658.4962 8383.9666 4136.7659 4519.3177 4588.1208 6218.1052 9853.2326 99030613 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9021.7993 386838818 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 408715.4762 19557.5651 21685.861 49509.1342 15642.0538 41867.8444 10443.0373 16298.0727 38626.0863 20565.5948 549695.948 16032.1403 14900.4016 18603.6175 15784.4118 15784.4118 56357.379 24539.2878 14308.781 27876.9064 33664.0013 12485.3279 15885.5959 11400.9149 27096.5015 9313.6795 35784.5505 33722.4221 24127.8162 5857.6278 16011.1927 14283.2793 14742.5644 90476.3575 38490083 xlnd Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 47456.9863 16037.4481 39134.0339 33316.3095 6904.7082 25423.1194 14999.3364 49290.5543 23372.3162 24677.2211 12221.9505 463296.7608 26129.1138 21500.1356 24264.3055 135388.3507 135388.3507 18096.6847 27476.2544 22019.0948 25426.7698 45408.6221 45959.2828 13803.1721 25210.1821 35043.5898 11373.9179 52646.5056 34392.1414 37428.4388 18076.1144 17525.7952 46209.8618 25142.3538 35948.2091 66801889 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 26695.3303 22253.3717 10673.8632 4956.8604 16514.7142 13692.6128 11657.9049 16654.7366 10338.8571 16036.5225 14001.1068 102589.6132 18383.72 12625.1164 24560.0584 10937.1199 10937.1199 4838.4705 26086.829 22743.1025 51326.6927 16370.8721 6084.7979 10246.1095 14950.6028 17671.463 12455.5756 32456.4352 36331.2281 19921.826 6389.3136 36080.892 11338.3682 5350.2908 24093.0627 148474704 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 185559.3251 10314.7394 8267.0703 9429.3849 23003.7594 10562.7514 5179.9253 3565.7778 14098.6104 13626.6797 6849.1477 195690.4781 7330.4072 25090.467 30140.5267 6963.513 6963.513 12700.6767 21176.0237 9992.5652 15498.7461 26540.7447 14681.1341 10663.4797 17798.02 18182.7781 26600.9089 32601.5834 7378.3304 22881.6706 6933.8426 9561.2351 123055.4901 10861.4851 15365.3766 118472095 linb Organic Remediation Pesticides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 395052.7677 48886.9472 182047.5111 200236.332 650025.938 143643.3418 192581.3663 264424.2346 72060.7817 137330.1046 148599.1988 138741.3225 3393832.9776 197919.7166 369496.1889 515111.7816 149241.2185 149241.2185 103027.9506 186707.5593 122708.2365 381004.09 234679.4886 170890.8957 87803.6325 101246.3068 154139.6416 87056.721 301271.4358 215646.3653 191518.4848 181844.7857 98254.3799 159774.2164 72946.9309 201529.8386 296128499 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 15243.3341 7747.9099 5241.192 26372.7387 5808.544 4455.797 7071.7389 2601.4645 4429.3877 19211.9012 18114.6646 131639.9144 38586.9559 26751.2027 9307.4941 12194.7006 12194.7006 3210.384 104747.2261 6139.1401 15953.3874 34223.6638 16701.0992 7177.7904 10265.8563 8265.8014 9225.3145 27050.0706 17827.8172 16405.7516 7887.4903 7803.1202 33326.1116 34967.9579 375266388 arsc Metal Homeostasis Arsenic Detoxification Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8214.0472 5172.3562 8941.1691 12208.6873 12929.5732 6350.168 5946.2022 8011.697 8638.6221 4521.647 266377.15 12164.217 11088.6601 4617.3947 3983.7422 3983.7422 6678.1553 15584.7214 8962.6898 11299.6939 13982.9414 13007.6839 4979.1715 5351.0743 14084.532 4359.821 22122.7353 7713.9015 15376.2488 12253.3729 6259.1807 8817.254 5744.0201 13867.794 224037824 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 258299.6505 36261.0051 127088.2281 34116.26 95824.1977 12944.7393 119216.4195 39713.6751 24068.9792 33654.5709 58992.0766 43928.0512 1815855.8353 51174.0098 101681.6065 65955.049 36155.5042 36155.5042 70126.8496 62965.3152 46291.1667 35543.2793 123764.5391 72165.7844 163049.3111 73851.6966 67440.1883 41364.7638 552858.9253 176649.8535 82378.867 32678.2503 46855.7041 51514.8689 25381.3384 97053.0589 409408212 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 6227.2667 6652.6477 5148.3709 15050.1155 4865.5324 17745.6459 3773.1976 6239.3443 8404.1676 4494.74 109539.0212 13036.6389 7819.6964 5545.1263 3806.0343 3806.0343 6188.5769 14984.285 7593.5876 12119.3315 10316.3468 14703.1367 5045.1762 5300.8044 11395.6658 9132.2417 21351.4817 4819.4344 13360.6926 5393.9724 6772.8172 6876.704 4135.0327 11328.8151 87200449 poba Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 253149.8243 62849.7811 205170.1436 75255.8013 112655.6601 60181.5339 18839.7619 50768.1276 173676.007 145178.7303 561332.8854 97133.8052 3427328.0139 119258.8809 324128.0511 155906.405 117855.2895 117855.2895 25859.9097 58217.4524 54851.6331 27486.1161 67335.9492 37590.0157 16580.7086 42412.6296 54245.5557 63283.8236 108988.0955 115107.8694 100726.1585 18770.3249 52750.3353 53441.2534 60041.1305 64958.742 238601525 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 14820.2746 75872.2212 47505.4123 16674.893 2493.7822 3957.5954 3878.5987 1971.4691 1971.4691 2695.0873 11317.2134 3470.0078 9309.4442 49250.989 13477.4754 2669.134 2506.9434 4956.3144 1843.0575 2720.2738 4726.6515 11755.9185 16576.7989 209492505 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 30438.6586 174249.397 11196.5688 5454.4915 18484.4332 22882.798 13537.9694 135887.4362 22980.592 18298.0172 545424.0349 22674.9526 22968.1184 17252.975 25518.5742 25518.5742 25827.9104 53456.9651 27975.8298 34191.7626 29714.6266 56395.9471 25512.6548 19850.2936 28806.5616 19931.736 112782.9984 33021.332 23677.3781 16773.8596 22361.2374 23938.1677 19169.6789 24272.7416 295982796 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 205524.0086 6352.1432 7418.9416 4584.2018 8554.6607 24993.9609 9781.1604 99148.2991 10795.6975 15443.2545 8448.1 10146.9471 10146.9471 12340.0911 81896.7223 12329.7944 29492.417 8854.9611 151885.9194 11001.4335 23061.039 19902.117 12443.2304 23753.5704 20473.1411 32167.0842 23228.1927 13077.4768 23545.1742 33581.8236 8977.0651 407768319 arylest Organic Remediation Aromatics Other aromatics Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 8588.06 7027.8643 15036.6964 9421.8392 4302.5889 5749.1196 10617.7436 8528.1742 4514.2084 301168.2606 10818.437 9068.6621 5652.3206 3489.0027 3489.0027 8284.679 13274.7807 10933.5323 12360.8384 15941.1518 10747.7008 5045.9108 5282.4072 14226.1996 4253.4447 22178.2833 11818.9744 13015.6669 4674.493 8652.8371 8245.6582 6022.7453 13710.9698 260645007 badh Organic Remediation Aromatics Other aromatics Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 85469.7239 31855.0071 15079.6195 21485.138 5277.355 16678.9552 57623.1327 79891.7493 20939.7646 74377.8416 35048.4547 694611.0479 26199.2024 81175.769 81683.6105 43068.1869 43068.1869 23936.3385 46537.1772 30199.0914 122506.2563 35940.961 64033.1504 50308.2569 21279.5417 32048.9423 21699.1606 172161.7479 19278.8351 55874.7176 11718.476 46455.9648 32144.0608 17637.9848 53628.345 226185465 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6478.7084 7600.8204 3588.3308 2331.5493 4949.0777 4519.5277 41302.6266 220926.4576 5967.2867 4592.4684 6070.9499 5076.528 5076.528 7690.5362 5947.1387 7496.8521 8454.3932 11520.3315 17706.1193 5705.495 8328.4224 5507.3534 8768.3744 28650.4518 6578.1965 5703.0467 50982460 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 1083727.9271 13291.7201 2906.6011 3768.1454 13973.1766 5364.7966 6301328.3275 33294.6625 6969.2141 10391.378 10391.378 3677.2246 18598.101 16705.3289 6847.8481 6250.2497 80951.8177 6790.9176 8258.3186 8796.56 13747.1172 6973.4718 6807.3616 4391.8665 3082.7115 11436.5914 16511.1017 18423.9664 119467366 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 19525.7027 7500.5447 8128.0803 16966.0946 8522.6139 7695.2109 12866.5276 29115.6334 62990.6535 24410.1702 16161.3125 248846.9722 14543.5502 17807.3167 35747.98 22350.9749 22350.9749 15144.7443 27521.7448 14745.5057 26506.3694 19768.4675 13173.7154 21488.7189 40122.9914 19165.2628 35155.7454 39747.616 40572.8801 33093.9146 33164.1977 16540.4551 72950.8018 34552.3918 110629.4898 383936701 arsc Metal Homeostasis Arsenic Detoxification Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 7670.3387 15067.3941 6367.4748 21004.6315 10840.9951 18125.7003 51970.113 4359.6276 8083.5708 5199.6536 3650.0565 175802.0266 11090.2924 10543.0566 10476.9473 7720.4952 7720.4952 5440.0511 13284.624 11811.9098 8330.2477 7051.3597 9676.0756 4938.0296 4217.6002 14275.3189 7130.3321 20478.5521 11530.628 11891.4768 7556.7381 8009.4538 9090.0704 5246.6835 12366.7934 114570980 tktA Carbon Cycling Carbon fixation Calvin cycle Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 12645.9619 14491.4774 9693.232 14549.5651 6353.9859 12963.0444 17346.7295 9773.7733 14686.6864 16248.0747 18764.1556 216413.0084 16021.4134 17603.2678 59512.4392 9439.9052 9439.9052 10598.7857 28168.2814 10917.9966 17467.9685 17889.0303 17545.8096 8870.7584 10341.7145 33008.6248 8467.9654 29241.6596 35288.2475 21969.8583 8680.1762 12737.954 14172.1685 7780.5642 15391.9236 15026850 tfdb Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 42838.4815 21527.5663 4288.1946 18952.5586 5457.1342 32986.3846 12163.6058 6146.7164 146419.4594 15354.6709 8188.2699 12168.3309 14687.0155 14687.0155 6946.3463 14967.2472 11077.4529 10667.1201 10732.7342 14218.6501 6459.8816 8557.2107 15121.5388 4962.5019 16203.759 16626.6633 18729.6676 10366.6073 9048.4754 15699.2072 6225.0097 12583.2206 317465227 amyA Carbon Cycling Carbon degradation Starch Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 35881.6602 85847.5856 277626.8923 4681.9182 36419.6571 5840.4678 51915.5202 18675.1799 17562.2281 28493.2574 24889.2965 182745.5254 21056.5645 15118.9153 17830.7676 28933.0384 28933.0384 14136.0651 30864.3589 10695.0115 33419.735 21688.7822 89031.9117 23505.37 14225.2159 17947.0198 15785.8708 41974.2443 12737.707 24125.9787 7073.3265 14196.918 25792.0015 9708.8502 23403.6912 67526985 rgl Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8247.9633 8839.4111 2769.1156 7559.6449 5442.3523 9100.6706 6346.1809 4003.6749 8658.7862 7560.5371 3830.9631 4885.1863 337265043 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 10703.6237 71176.6553 2779.193 44472.9537 11716.5202 13165.3441 19569.4273 9478.4552 276705.0932 10101.5893 13845.2276 12824.1916 11292.5028 11292.5028 6043.6952 50253.9713 9778.1945 8548.4982 8140.5811 10303.9321 6407.0343 7627.3289 24151.4189 25312.0311 24436.2251 16775.9938 14892.5907 6583.6756 7003.6031 14582.454 88246.6663 8083.5613 334343384 nahf Organic Remediation Aromatics Polycyclic aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 20146.4347 24635.0658 31901.6128 30101.2207 16196.2512 4091.0686 5952.8407 6627.3071 8169.7157 11413.7215 219688.8282 11049.9741 10512.3296 9104.7727 5209.753 5209.753 3856.7439 21725.5493 11827.3169 4587.3327 9716.7217 11302.3626 3429.4505 3499.9942 37451.8831 5805.3562 28381.2639 11530.941 18097.8635 8967.0167 10112.9881 4663.3477 4367.3492 9808.0968 300725209 gdh Nitrogen Ammonification NA Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 52845.6725 23136.8422 79909.0606 8267.6807 6464.7036 25983.5862 31365.8222 23311.6764 24571.7201 30127.7747 64366.8927 764277.8136 30313.344 35224.4248 35319.6645 22604.118 22604.118 53709.0646 42569.1106 25427.8662 30261.5151 62935.9885 38830.8287 15248.5263 33139.2164 37207.7869 17925.8468 93996.1194 52990.5756 44227.7988 98054.7688 27359.461 54379.0385 20483.5497 31710.1608 184199505 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 5052.828 66529.3957 7556.7007 8765.757 12334.0991 12625.7149 12625.7149 8249.9347 4349.7703 11824.2867 3688.8862 6856.586 3124.4057 19094.7874 9507.6986 2175.1581 5330.4114 10013.5287 4344.5795 162072839 dsrB Sulfur sulfite reduction NA Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 18592.3393 29709.8175 8601.2044 50697.8845 7529.7269 15663.2237 11128.1134 24532.1703 24810.2137 341270.3019 16829.0577 15475.4266 17831.531 13790.9281 13790.9281 10002.5324 34234.2125 20443.1871 23270.1091 38700.8487 34980.3345 215637.5534 20617.5249 26848.3623 15368.8692 39965.4179 32309.1994 68858.9912 5277.4544 9170.192 32515.5818 14291.9226 19694.8982 345444585 amyA Carbon Cycling Carbon degradation Starch Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 30469.5383 59489.3375 12934.6247 4913.5591 18678.6288 13085.9279 113853.5123 6902.9869 2821.6492 17658.9927 5306.2957 313104989 dsrB Sulfur sulfite reduction NA uncultured prokaryote 32342.5871 238709661 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 11577.1843 3781.1097 22397.2196 6400.3461 18596.0384 4885.0477 37771.5888 12414.4041 6933.579 324296.2074 19123.2452 14051.2399 3911.9057 4772.831 4772.831 5174.3215 18091.392 8875.6161 6342.5513 40995.7174 6571.352 4480.8493 6632.2731 5957.5452 30061.1405 7685.9596 13215.39 3312.4775 11238.0012 13641.8064 7661.4885 14105.5553 27531096 hcab Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 9541.6294 19538.994 21186.6946 9141.7319 95952.712 20644.1231 4741.9844 5180.0304 7297.2751 5111.6404 158861.167 13582.5908 15539.7972 30394.0653 94700.304 94700.304 5249.4727 15823.7878 6843.1057 45825.7189 15298.0092 10320.0514 4468.6903 7473.4338 25209.2756 6755.2637 23723.2848 16478.4919 24450.2348 8592.819 12668.1082 12152.4632 4769.3056 8615.2992 315226393 ppx Phosphorus Polyphosphate degradation NA Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 54388.0077 24654.6864 11560.5714 22743.207 9945.7204 12623.5414 9930.1401 14648.2963 16693.4139 47245.6336 493173.9806 29128.0384 29037.18 22049.8503 24964.0396 24964.0396 15000.0752 34664.2811 35197.8712 46542.6037 59356.8408 17309.5018 22595.3349 27427.4591 20716.8962 51333.9144 40687.6913 32912.6436 39104.3392 12368.8459 15777.222 34529.8933 21552.9346 21745.399 283787053 nrfa Nitrogen Dissimilatory N reduction NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 13260.2242 90706.0966 11768.6197 5784.9229 9945.2615 35345.424 10162.2992 12729.8624 36449.9597 10121.967 313960.3051 17454.448 36677.0299 21217.2402 28964.0169 28964.0169 10513.0041 56979.6967 17076.1903 23350.1002 54951.0711 19588.9023 9515.6998 12462.5756 18652.7076 21175.3171 39208.6182 31956.7343 46280.0759 12845.5186 18285.2161 15882.4666 14561.6246 21552.6276 28270519 ppk Phosphorus Polyphosphate synthesis NA Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 101050.696 67475.1986 80794.9025 592919.5628 80665.0948 21542.9769 58920.2517 77792.0756 54673.9296 119250.072 385659.3146 69342.4937 2255770.9024 104446.1535 101328.1447 127762.4326 101450.7657 101450.7657 47647.8262 124430.35 88487.8056 126709.6939 167285.5316 92958.4068 55625.5725 67636.7214 88375.5774 265772.1727 183550.7831 85602.3704 111507.8222 91953.3841 71314.8806 123472.9192 68777.7381 97294.532 63081926 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 32676.5534 5845.868 4873.9843 4008.2159 3115.3871 2271.0563 4413.4046 5034.0892 129844.8059 4570.9735 4267.0042 2777.0619 2777.0619 9089.7198 5218.8647 7061.5553 3008.737 3104.1248 7896.2615 3183.1982 5685.8271 5647.8532 3462.2116 5185.3575 8288.4478 3943.7919 353194066 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 353091.6725 21877.1228 29735.4338 42284.0659 33357.9145 43162.7121 15568.9224 24364.5039 28686.0572 16112.3648 487917.2445 33205.7238 29753.9705 25177.1675 12736.0245 12736.0245 17643.9269 41262.9046 29318.171 430851.2195 59496.3359 43493.4145 59918.396 19458.8293 34842.0754 14300.4965 53509.1261 38138.0128 36561.6571 18862.6647 22745.4908 19230.4264 18612.2566 282888.7493 375148485 nosz Nitrogen Denitrification NA Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 19909.0467 4691.3139 2856.8117 8400.4801 3262.4863 9146.5994 14816.8006 9102.4316 135181.6145 7503.0747 24612.0169 4062.8677 4062.8677 2944.4742 10533.8154 5882.5014 3953.4029 7231.7149 2299.8436 2408.566 14959.0853 4975.5597 21681.2003 7591.2095 9883.9093 2732.0316 8990.1149 5798.7173 3691.0117 12166.0855 254294233 amyA Carbon Cycling Carbon degradation Starch Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 4245.4171 3442.3114 4490.7778 5104.8685 2404.5475 3074.6984 254453253 pgk Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 110479.8897 10379.3724 47823.0085 65534.1956 87198.0363 48665.3357 46845.6004 40460.8599 118893.6675 144642.8601 50416.5601 42842.8095 813250.2528 48121.7908 44851.576 61432.7402 59336.7211 59336.7211 24481.1659 55536.5266 28615.0436 33569.4063 51411.304 53092.3114 25847.3718 30779.0018 194319.643 57855.9055 108316.2084 29755.5253 57302.0979 40134.6506 37730.8968 54127.1938 25998.5263 227373.7234 156235125 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 13639.1839 17465.4243 5007.2585 8488.0533 4071.7134 4572.9218 6483.0089 5836.3653 154843.7221 6377.0491 5713.1066 6111.749 3507.1717 3507.1717 4061.8968 30513.7031 8496.6948 13450.7088 16844.0849 6122.3127 4259.5028 4751.6613 10247.0957 4853.4817 16660.2375 9756.1336 10698.0866 6427.6063 7218.5971 5456.44 4502.5283 10085.5206 222119508 narg Nitrogen Denitrification NA Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 4052.238 15792.1873 3965.1353 57570.4095 4571.9751 3698.9051 5055.8194 4872.8438 2610.5402 2558.0814 9052.5061 4753.0885 6823.3881 3071.5744 2184.6708 8349.3448 329902077 one_ring_12diox Organic Remediation Aromatics Other aromatics Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 17726.0699 23235.8068 25339.321 31391.5661 4698.5439 18170.7906 15994.4445 12960.3586 17002.638 18897.3326 10817.2039 365185.8269 25029.2473 21757.3498 15856.6453 28253.7452 28253.7452 26092.5364 48175.8376 18095.6249 57055.2269 29961.1902 29561.0279 12577.5682 9800.1235 29931.6152 13548.0233 37385.8906 31691.8385 33583.4786 15156.9045 13611.7795 18513.3176 24608.5251 38173.8434 108805625 trzn Organic Remediation Herbicides related compound NA Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 12231.5341 9277.4257 10401.5359 29397.42125 4766.5237 7128.73545 5340.8028 12481.34085 8130.7096 7629.93855 180090.1262 11053.9373 27520.3859 13520.33635 9111.4772 9111.4772 7590.0236 17602.6726 8600.90995 15511.6392 11619.80785 22855.07645 5732.3089 7826.7016 24186.84985 5426.42265 19659.025 12545.34995 15295.03655 6165.93605 7806.1896 7766.16745 8166.4071 15195.5445 170694441 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 37456.1595 10711.3124 13049.2215 23562.6336 102518.6532 18752.6459 24220.7117 82826.3801 14749.1041 45047.7459 27663.2492 472596.3807 28991.6199 33832.1775 32332.1644 54048.401 54048.401 31302.6334 74611.3679 17861.4452 19156.6392 33925.0714 34396.0154 28961.4725 19450.8894 36293.0241 28451.5142 49078.5912 49390.8097 38528.4873 15170.7237 24834.1648 30719.3755 21362.1492 34188.7049 302681799 lactase_fungi Carbon Cycling Carbon degradation Lactose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 9060.9326 161813.3989 39199.8047 4845.5055 5232.2994 12070.0219 2790.8156 9361.5025 10878.9869 29881.6212 220135.538 10939.8753 7590.4268 5888.6057 5888.6057 7805.2585 18100.502 9030.6812 11925.1504 8858.5884 11906.3795 5676.9254 4945.8258 13156.9375 6461.8387 15878.2952 4703.7557 13689.6516 4815.42 6547.2534 10903.3083 5000.7324 14887.6306 13423803 amyA Carbon Cycling Carbon degradation Starch Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 174756.3679 39311.4314 81316.8397 72012.3564 4322.3963 11698.7475 21760.999 6915.9827 40999.5296 23032.2792 22949.2072 1496350.2941 16264.1128 23445.0318 25106.5075 36784.7946 36784.7946 30085.088 41375.397 21032.6424 41428.2922 37239.1052 30044.9426 15809.7553 13350.5031 31705.87 14344.9718 489956.1439 16470.2553 38409.0551 46349.475 26489.1174 40299.1766 17424.4818 44401.8947 291416905 atza Organic Remediation Herbicides related compound NA Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 11434.0781 8830.1584 6735.397 2973.2321 5273.7658 15118.1853 6697.8806 73607.1694 7349.3284 16562.9658 17838.7946 5935.127 5935.127 18621.516 19198.6969 15181.8034 8008.193 6333.3342 10559.2865 4384.3779 6015.3167 9179.898 8880.291 12445.9515 9145.8436 9804.108 3073.1466 24842.7863 7502.3551 3798.1998 9522.9882 238837008 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 5606.9166 4992.8028 25649.603 3151.8051 3278.1474 21109.5919 4682.4435 6392.8114 6807.1316 6313.136 3207.4344 3207.4344 9960.9348 7222.9982 5100.1925 8463.7947 2906.1667 10741.1236 9236.9153 4314.6727 14180.0061 8908.0841 10724.3567 4488.0817 4202.8821 4502.1891 254446358 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 274966.9332 251256.0888 658226.651 53562.2682 87285.891 93200.851 150995.1582 308023.8857 81716.5157 99645.6656 83024.3786 1441035.8848 156446.9802 152895.8678 148292.203 113242.954 113242.954 63693.1111 208410.4754 150029.6848 315203.3106 150907.8913 283265.4464 136913.161 98706.582 108872.9025 116292.4037 338743.454 266525.5826 157379.7211 105289.0503 89236.1696 127605.537 78127.7472 178171.6702 302479657 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 112851.4046 50273.4021 46351.8174 57509.9736 63697.2886 168492.574 41196.8414 46152.8454 25601.7212 63687.3396 61781.9071 102204.3029 2174411.5802 172327.7028 98521.3368 112219.9813 56622.76 56622.76 48453.7218 84791.9586 57741.131 64694.4266 116410.4027 71738.1115 52609.8625 59047.6549 99707.9301 54413.0966 133583.4391 73324.244 131365.6617 423136.7771 80026.3317 90769.0958 42046.0851 60446.3444 83316626 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 106638.7268 34116.8961 13650.355 31133.0708 8516.9691 71034.3906 79028.669 68342.3525 17678.0838 27161.8584 38578.9756 668147.7354 85946.973 14970.6023 80356.0272 45521.7383 45521.7383 28658.0592 36468.5487 24761.2089 373664.273 105692.4073 29907.007 73377.8911 40472.6779 23417.4769 53255.078 76152.5029 15156.6745 28687.7631 36155.3061 29047.2374 52819.0617 37323.1146 86847.1343 262208728 B_lactamase_A Virulence Antibiotic resistance Degradation Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 22740.0541 7406.3199 22790.3517 19749.9123 3753.2207 13678.2959 2058.0299 5568.5969 8918.5845 13022.8771 199839.5712 24229.263 14569.4843 13029.2382 7619.1281 7619.1281 51769.5592 23180.9299 17177.884 32079.2211 10447.4028 6762.3751 13245.2285 31358.014 10818.6787 41671.7663 26780.0134 28194.9258 11278.4964 7052.6609 11042.437 3765.721 7543.81 74317425 sqr Sulfur Sulfide Oxidation NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 6124.577 5336.6383 3049.4381 4045.753 15147.4393 2574.8572 95804.3137 11333.3554 3783.9601 3783.9601 11367.6661 7797.8284 3952.6134 10062.9485 2510.8021 9337.3943 5203.7547 3882.3979 8641.4716 7768.2583 6832.704 4011.9889 4383.47 3436.1479 2350.0618 6854.7791 261409817 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 16435.2476 10790.7329 30647.174 10013.4909 6678.149 10176.4574 7743.7586 8229.3321 8512.1721 4944.4106 226170.1905 15837.6477 14573.482 32984.0054 7266.2261 7266.2261 4362.4826 23572.328 14368.2069 11245.4763 11365.3875 37246.0563 4876.1701 10598.072 17665.5081 5769.9609 22601.6812 14181.9579 15392.8754 6718.8198 8687.587 11057.8505 6908.0556 10061.2618 177671597 ppx Phosphorus Polyphosphate degradation NA Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 8093.2149 6681.1235 3721.44 2114.6254 221722723 B_lactamase_A Virulence Antibiotic resistance Degradation Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 10855.064 5946.4107 3063.5126 45234.9492 3078.1785 7107.1833 7016.8331 3145.9205 118673.812 6731.5574 5577.2919 5219.1116 3266.2935 3266.2935 3748.563 11875.7669 5654.0165 5835.6945 9081.4514 9565.6147 7604.2252 4494.6225 8219.7011 4196.0873 17966.4928 8578.3975 2914.9409 5488.8097 4932.578 4043.6943 10427.3599 149913902 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 61103.8466 24160.1883 82131.5802 66183.4302 15457.6056 38441.8933 42032.3026 62545.6714 31845.0441 275017.9427 90659.9656 5764477.4142 496136.867 65927.8095 75568.8878 53541.642 53541.642 97247.4008 127481.2563 74331.1689 88193.8602 76626.6915 48402.1507 37536.8522 43621.5482 95704.5368 53683.5216 537012.221 71818.1251 114467.1987 31452.5333 87523.9678 69714.213 58050.818 34775.5941 115449707 rgl Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 393670.9474 4696.0443 3759.1771 222441457 mer Metal Homeostasis Mercury Detoxification Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 225482.9428 11910.067 76624.342 55145.1109 36327.4081 15159.4455 134352.4327 130943.977 52184.1234 158008.6002 735967.9688 281703.2487 2432478.382 115776.8882 152493.4992 385704.6426 193966.4383 193966.4383 72594.3754 157403.8911 88533.5333 357670.105 602755.1846 620743.6537 162171.5886 130006.8766 140763.0536 75250.9587 370670.7296 180054.3781 125669.9902 51875.2752 412713.3774 165978.956 98556.5552 97201.7046 338738479 cysJ Sulfur Reduction NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 16280.0627 10686.6277 6915.063 16442.5163 9267.8069 6348.4485 10017.2529 7988.6718 8022.7178 305136.873 15723.8334 14916.981 12254.5829 6225.8311 6225.8311 10145.7346 19754.5552 17503.5194 13833.314 19632.3668 20162.4455 7584.7407 7557.5421 22097.2604 9260.6728 30281.1453 17481.5999 19622.2847 10074.0666 17581.2377 11241.1847 12720.7216 21184.1352 66801951 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6649.2395 21153.4243 3629.8741 5035.6343 17927.3855 7937.102 12361.8621 4658.3811 250888.2831 9632.7901 32574.9146 5828.1525 7832.7384 7832.7384 5827.5648 9929.8759 9723.9617 6747.5393 7634.3538 8631.9506 5712.4011 7631.7876 19358.2412 78718.1429 36469.4392 12756.3061 16537.3665 3216.9612 5691.9149 5031.584 3890.7468 6973.0675 325107588 arsc Metal Homeostasis Arsenic Detoxification Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 34977.4299 7681.5372 27386.8099 9688.768 9011.3992 12264.1461 4672.1489 9996.9472 12002.9126 6679.4137 192422.1071 9554.6079 12503.4273 11538.9753 8990.5565 8990.5565 11057.8701 18286.6708 11491.8164 11820.6149 16010.6354 8306.074 10510.345 19949.3131 42565.0924 28173.6562 21322.4397 19255.1756 17489.4962 7112.1449 12360.9381 7601.9596 4935.7082 21972.6884 222543172 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 206720.3695 11916.0358 61161.9147 426231.1464 141559.6061 165640.8143 56449.2475 353235.0765 479811.6205 69951.8641 63747.3918 74299.2587 5169162.2353 293282.1293 142526.6208 144333.2293 88967.496 88967.496 118341.0824 94814.1957 45844.5677 412663.419 157432.1843 153726.6731 64225.0227 90653.1652 161423.8115 118240.6402 315237.8332 184303.2023 132613.1113 47122.676 71888.9997 104627.734 41579.7931 96102.607 53850117 SoxB Sulfur Sulfur Oxidation NA Pseudaminobacter salicylatoxidans KCT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter;species:Pseudaminobacter salicylatoxidans; 26401.5573 14162.1493 18122.6928 16117.3444 33576.5907 17987.0974 29099.9273 22883.6719 10311.7664 18996.6122 27069.1307 14106.9369 420590.4995 69421.7781 39479.5577 24529.5622 23919.5378 23919.5378 55032.3606 24088.9015 21912.9174 29282.3046 25601.2638 39759.1733 12509.6451 12186.5621 28771.4845 261196.0337 47663.6404 23781.5159 27980.4827 15679.5597 14877.0094 21111.9031 14287.5196 46074.4161 32307889 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31490.3754 10696.1451 24626.5447 46609.9923 20421.3934 11692.0134 18168.2304 6583.9718 13124.1717 17173.7839 33117.3382 519363.259 25012.0428 30436.0234 23589.25 24310.674 24310.674 13769.6219 36709.2313 27352.8895 27631.0489 40490.5381 30398.6018 10629.6743 12593.8604 34186.3981 17058.2563 50965.5372 25039.2945 31630.838 12197.6563 28241.1135 16318.5682 11588.3809 29444.6145 87281233 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16238.5342 24656.8113 3881.7874 3614.6546 4961.7547 7394.9728 58505.3216 6672.2997 5021.015 2907.7073 2907.7073 4384.2051 12345.9298 4386.7057 13462.1919 76868.0222 5149.6665 8426.9869 3002.3507 26181.9989 5427.5235 6902.9573 2473.7124 3848.3932 11819.2924 2212.1265 254445717 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 20682.1312 14373.8821 11969.2913 21351.6637 17868.7026 355945.7113 14401.7545 13046.8187 11641.0428 19952.8804 23130.1921 8120.4446 434392.2979 23114.2526 21786.5555 17474.4892 11760.6228 11760.6228 23234.8038 29976.8798 20837.2123 37385.8853 39360.8342 30500.8929 9968.4265 14190.8561 32269.4628 15408.3107 48909.3923 24054.2116 53641.7611 11184.5475 16006.6897 40959.6352 14091 30129.8458 78093574 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5653.8042 9086.5842 4428.2556 8286.5235 2164.467 4346.2898 2456.3667 126647.9073 5656.6888 4210.1732 6947.0986 4212.7767 4212.7767 3905.2617 7512.9741 3394.8535 5065.0321 7647.1988 8201.2838 2677.2553 10104.3345 10859.0105 3078.7226 14123.2515 6865.5002 10923.7185 2195.4538 4065.0164 5575.1634 2330.9638 339502250 xyla Carbon Cycling Carbon degradation Hemicellulose Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 4606.6341 4717.0932 16289.9852 36556.2739 7590.8054 4020.1195 4040.207 126174.1729 4343.641 6043.7036 4719.977 125079.5533 4891.7271 3847.7214 7169.6383 3426.3435 3426.3435 5118.3141 4940.6749 4351.9182 9233.3833 6720.3779 9221.2446 2249.2969 5329.9952 12653.4693 4819.572 4913.0262 6919.3463 8730.8817 386713984 Sir Sulfur sulfite reduction NA Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 4204.2434 7085.5465 2830.9524 4251.5821 6633.2092 8449.309 2421.2436 98975.1722 5454.9582 5995.115 2251.0397 2251.0397 3401.1831 16025.5635 4622.8163 6023.6505 11510.3366 4163.8355 2599.4839 3808.4101 9591.8322 10620.717 3966.152 8570.7775 3787.6212 6156.099 5108.2604 2541.4464 8416.3465 145591452 aps_apra Sulfur adenylylsulfate reductase NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 10863.0623 39609.2536 8609.2826 13839.0455 4817.8285 2675.1808 20492.5465 26996.6954 7990.8976 7241.9463 10885.5506 126591.9061 32027.0021 9832.8561 14074.0641 7267.8892 7267.8892 4455.5087 14511.2451 5622.449 13897.5127 17647.2132 9922.7683 7592.2729 8168.9594 8604.7406 15629.1565 38577.8871 7187.289 14048.1309 3610.4518 9783.6573 6479.8977 6625.8192 7808.9842 379057057 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 11354.8351 4215.8382 4029.3694 4156.7572 3108.5365 3962.8883 14446.8807 3576.1584 3576.1584 2678.5538 10664.8909 6093.8083 7327.1441 3836.4969 3147.2436 4726.4384 2742.3837 11873.1195 5153.3851 7742.511 3459.5982 6598.4764 54463.3842 3370.2009 4918.1824 297153785 tfth Organic Remediation Aromatics Chlorinated aromatics Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 8420.8186 7585.7141 14070.2266 7139.8741 56522.6512 12870.9463 10490.0529 69490.0239 110761.21 9201.307 14501.2046 7427.641 3638.9485 3638.9485 4451.3708 14284.302 6797.4936 10372.667 12799.3662 12843.3843 2595.5664 8084.2471 17551.1644 26033.2847 24203.2813 11087.764 3820.4089 10717.6206 11854.3074 24054.0544 58570.1244 379056722 arsm Metal Homeostasis Arsenic Detoxification Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 32758.6162 10203.9389 21012.1754 23942.5365 15919.3948 32851.2351 8132.3614 5542.9668 13431.8647 27220.2555 16073.8132 1331047.7275 23393.5819 34011.8514 15265.2935 25570.2609 25570.2609 15094.9322 32910.1473 21267.5196 92340.5117 26085.6635 23735.6602 24248.7085 13983.9686 19213.3446 12099.7404 44214.9774 18881.4777 25746.4554 9789.0085 14465.5742 29733.2237 11536.1046 36919.872 328492255 nirb Nitrogen Assimilatory N reduction NA Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 4273.392 2253.9782 4196.3287 3870.8482 2804.8922 3683.9195 4135.9128 5588.4081 4947.2339 4043.251 5895.2645 6803.5566 149809651 SoxB Sulfur Sulfur Oxidation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11096.1662 15180.5847 5156.4541 11043.5829 18152.144 10913.4553 6204.0449 6676.8473 6561.5557 11630.071 10773.6307 7160.6586 203014.8695 34697.9547 9701.1472 11377.7722 8581.4301 8581.4301 14648.834 23139.7323 15122.8329 56568.6232 13914.0632 16655.9367 7233.2248 10537.7893 36757.8753 12394.9769 37370.2524 22961.9341 18529.7282 15119.611 9357.7162 15002.2313 22067.8405 18239.2785 374814993 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 6846.3601 12849.8997 17348.4483 10051.0254 4022.9933 14781.2016 3118.4936 4897.908 87029.1782 3440.7378 211809.08 6401.3778 25764.4506 16695.9788 11121.5636 11121.5636 6224.4037 11950.7366 8998.8623 28823.2939 5873.2318 4957.6625 3194.8192 6465.2837 16985.4557 8417.6508 18117.5851 14203.3548 14637.0492 5046.6466 5589.6266 7102.3532 3008.287 10940.0785 116060636 Sir Sulfur sulfite reduction NA Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 4917.9674 4492.848 10921.1918 2826.6064 4347.8296 76766.2015 5595.9843 7718.2536 3539.1491 3539.1491 13503.2889 4444.4395 10418.0161 115657.8188 6421.4605 2117.3428 8279.5489 2564.8038 17527.8676 52788.7127 4920.7919 3097.727 5556.555 32167.9487 5482.9174 357199387 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 11029.8909 3044.0744 3044.0744 5871.4197 5122.7756 5393.3005 2278.5775 3200.8526 227238515 amyA Carbon Cycling Carbon degradation Starch Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8521.3848 8991.256 8020.5329 7864.6085 12022.9578 5564.0054 6034.7264 5210.9483 15445.7025 106933.4826 7591.2451 7582.5187 5953.1116 18113.539 18113.539 5685.4094 12883.0333 5966.9732 5511.6195 6713.6316 5700.5064 2465.9292 4258.7326 10696.9503 2934.6291 17602.5735 6060.6816 8394.9465 3532.4296 6544.8778 4109.0084 3354.4587 7539.9306 188027734 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6138.765 18246.0564 49415.4071 11569.2938 2764.885 7564.5497 86978.2345 6222.5177 5455.6509 219706.6378 10156.3649 12016.8365 23636.1875 17150.3252 17150.3252 5774.1745 7249.7569 11142.5533 146257.589 6141.391 6490.6041 3294.2255 7408.7089 23322.3584 4842.8382 20860.3785 15819.8227 21299.8633 8248.4275 6290.1041 5103.5655 10102.9617 12478.1426 38601952 B_lactamase_A Virulence Antibiotic resistance Degradation Citrobacter koseri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 36690.1862 5877.1978 2017.2033 157409956 arsc Metal Homeostasis Arsenic Detoxification Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 9232.0232 8244.5601 3380.8546 4284.735 10210.6576 8466.0331 7376.9708 83254.1241 16694.3417 41955.6427 5699.8851 6022.6742 6022.6742 13819.9231 15815.5183 10148.7171 8216.1434 11531.746 7684.3969 3917.0414 4056.1547 9913.8134 4315.4478 17126.0791 12032.2398 11635.975 3331.9526 6044.8152 10146.4113 4505.149 14355.1111 295413217 phn Organic Remediation Herbicides related compound NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 6911.3629 6871.4396 7936.8691 5152.5513 3060.7039 3961.6088 7040.7855 6374.0337 2950.0028 163090.5327 11116.9383 5746.9971 6846.2995 3754.8415 3754.8415 5917.8892 12302.8954 9151.1373 88521.7385 9335.3037 12844.5592 5036.6317 4404.9337 16058.8109 3512.1483 13157.7994 10804.3286 10207.2847 4837.4774 5276.1638 7279.918 3412.1047 14612.3548 119951113 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 4327.4146 5873.5517 10468.992 7584.97 6243.8809 5303.2641 2980.9656 5065.2869 4301.5218 117306.7486 28197.1335 6112.9676 3088.4262 3088.4262 2917.5629 9382.2049 5629.5782 8901.1434 6156.8812 8021.4079 5418.8649 3788.069 6559.1734 3688.2464 11674.8692 8416.2201 5213.2473 3294.3714 3032.3432 20266.4861 3242.3683 5900.1382 158444652 apu Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 297487.8718 85280.1252 140107.3028 145037.5419 322045.0239 51635.948 98626.5333 208622.3772 117222.2033 129516.1235 157124.7809 195347.5883 3299645.6631 125711.5923 156087.233 179479.8999 123230.8078 123230.8078 86513.8237 169137.9064 192289.462 118123.4694 235818.5136 394134.6036 90493.6306 93438.8756 150728.1377 89834.1099 288755.0009 387360.3404 211972.6006 93644.8095 158307.1462 172541.3499 140932.8364 201895.4287 374607976 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 6239.3559 16613.8067 8818.1252 3755.932 19260.8786 5770.916 13015.2295 35466.872 10060.4832 738037.9589 3915.0629 8986.8786 7994.101 13395.2127 13395.2127 6118.8789 39462.3897 10405.2476 8989.1003 29488.8144 9270.3685 9956.4199 15958.8457 9660.8986 10924.2533 29751.793 14076.4558 27971.7216 3889.3347 11640.554 12894.0269 5340.6863 108700.2002 229818682 ara Carbon Cycling Carbon degradation Hemicellulose Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 340800.0427 133991.9157 186547.5114 57997.0908 184655.2386 75431.8847 59580.222 166069.2466 92675.1155 123235.6045 131589.3158 137330.5243 2166232.5576 793695.0242 219678.5071 381198.1891 311938.0388 311938.0388 208359.7427 191354.8289 57853.5534 195317.0694 192232.4133 118677.4397 75401.4775 158360.504 159283.6542 106313.708 332076.3796 86581.8617 83602.0453 195213.9879 197284.58 90159.202 83705.7487 192107.2773 350551829 PRI Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 44401.7468 56311.1431 28816.373 99514.1195 40019.3012 20436.7154 48240.8431 31858.2963 26409.2935 51271.8015 50132.2621 27178.9146 1016524.2622 46687.97 53309.4431 53504.4908 53448.2666 53448.2666 32257.6216 55436.5148 41810.6848 40156.5554 48450.5714 63586.3515 21000.2055 21504.5705 76193.0524 21273.777 81384.5984 38247.5665 50445.3745 61728.6168 27524.4523 25597.1151 19096.6553 56690.4141 56799065 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5051.1727 9038.6093 3237.8425 3110.6714 3461.3421 4254.2408 4126.9067 57099.6637 4016.6152 4323.5415 4857.8698 3095.57 3095.57 6033.527 5371.429 8405.8935 4304.9527 6131.5384 7201.4195 8701.7306 5642.3124 8215.419 2912.6941 3011.0172 11853.4787 365847180 endoglucanase Carbon Cycling Carbon degradation Cellulose Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 13718.3186 4950.3412 6753.152 3824.2356 3030.6995 5313.2163 7829.4212 3280.5892 3849.7399 6618.1127 5536.6346 7900.5296 19760.8916 19760.8916 4589.1175 12907.0769 6413.4758 7466.9462 55165.9132 11055.7908 3460.0071 3827.6991 7858.9766 2431.6446 17189.3724 8086.8836 13116.302 3188.8134 6590.5222 8162.6582 3923.3594 9959.5344 302490176 mer Metal Homeostasis Mercury Detoxification Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 55839.4341 25469.225 20731.0324 73022.6891 13387.7266 85619.7629 49623.9715 56731.318 17789.7213 59490.0357 37449.4855 340752.1271 29600.1013 41333.0405 73380.9662 30152.4404 30152.4404 23380.1776 73671.3613 21900.2944 51547.1728 61398.5566 15061.373 39974.7993 57074.2252 27675.3909 26349.84 89677.5171 39258.8819 36991.336 18123.0287 70782.4374 19839.9196 14786.9779 52790.907 182679919 amyA Carbon Cycling Carbon degradation Starch Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 28399.3399 6727.9287 5809.4829 11739.9809 38691.6673 14626.7602 10908.1604 9514.0626 5495.7499 10292.0127 10114.9165 176622.7893 5014.1499 9389.4935 19640.9093 7154.2828 7154.2828 4858.7251 14860.5732 7689.9264 10785.6521 11535.0792 6144.8099 7614.8999 8328.0606 8800.9223 11162.2683 27447.4558 11739.2896 13738.5276 7916.2551 9333.0107 8892.4204 5962.1695 16438.8226 28900726 arylest Organic Remediation Aromatics Other aromatics Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 11598.4886 8116.7854 21618.6082 6378.3916 3760.7761 4598.5575 68435.252 7932.0789 134085.6835 114760.6102 5649.7471 4720.3874 4720.3874 3665.9369 24922.3643 8045.5692 9707.6833 3250.0331 5292.0312 7504.4482 3544.544 20043.123 11015.1027 8984.5354 3928.0506 5413.267 8336.2323 7853.6176 320530302 mer Metal Homeostasis Mercury Detoxification Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 4201.4228 20654.8887 14760.2818 4875.8275 5180.8492 3327.209 5108.4591 5684.8807 3232.7911 11266.9839 8566.3797 7690.6722 2637.0215 6309.7978 5744.5539 5421.5515 116695701 mer Metal Homeostasis Mercury Detoxification Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4525.2385 23436.5542 2525.5181 31619.1884 2991.9953 17954.2382 3394.164 8404.8584 1925.494 1925.494 7455.2101 17820.6906 2587.7967 7433.0725 3756.9007 6725.7567 2285.1793 4950.1602 3539.6587 8391.4907 169866011 protease_serine_fungi Carbon Cycling Carbon degradation protein Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 10440.7003 13386.5143 4400.95545 359297.4804 3757.1926 14483.78955 4012.5297 13425.51265 8945.22455 263446.1604 30340.91375 12179.0769 14408.49375 11282.7703 11282.7703 15277.77905 13356.22455 19102.1229 11254.41225 4607.5926 9915.158 16904.4377 4128.92305 12318.3874 20591.58575 3306.826 10757.8866 3669.2451 9443.497 21437253 xylanase Carbon Cycling Carbon degradation Hemicellulose Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 4852.3999 11876.755 11961.7222 6026.3221 2487.9513 82759.1253 6252.6947 5354.7902 2501.4471 2501.4471 4198.5872 9506.0689 8427.2321 7595.3799 5256.1405 2900.8243 3425.0698 10786.3323 2638.6176 11636.2348 9773.0216 10262.5686 4270.6325 4421.4439 4790.1547 3089.051 6792.9884 312198133 limeh Carbon Cycling Carbon degradation Terpenes Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 42541.2103 98078.1633 31735.2835 314320.2473 16276.3612 7782.0652 19410.397 28106.79 24308.5554 41784.7449 22175.5424 27855.8488 170707.4783 39722.5695 59785.6706 60566.923 73132.2797 73132.2797 53352.0192 59069.647 19202.6802 33449.6194 83167.4222 12838.7196 35261.4065 62490.0977 39195.2453 48551.7801 88706.5874 48347.1582 184788.9034 29263.3339 67008.7911 42645.4144 34993.7914 32011.7079 292664025 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 7266.622 6479.0584 10670.9453 111003.5459 3538.6522 2884.0795 3441.5768 6744.8241 15571.9923 85197.9537 5444.1521 36081.5859 7771.4748 5446.7844 5446.7844 3492.1284 11728.2061 7185.9926 15759.4827 25723.4053 3060.8225 6296.8713 9101.5653 14025.7065 8994.4563 27206.352 5042.707 10185.3905 7263.2081 6150.941 9060.7569 71556145 mdld Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 65799.4206 666825.7041 24255.29 64692.5034 28024.7006 29798.4069 33724.6742 43002.2502 33705.1561 29025.912 18673.292 954732.3029 53183.5032 59362.6872 44916.6304 36846.5899 36846.5899 21880.1832 79722.1928 32821.9992 114913.8012 59820.4544 99815.927 24422.5106 18749.8535 47211.3123 20646.0659 98565.6218 82872.2222 32552.8093 39218.3661 19241.457 29807.9624 31300.6641 57146.9647 220913769 arylest Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9601.4201 3575.3357 12241.0444 182918.7448 2432.5849 2493.9921 7715.2734 237846178 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 188123.4565 36254.729 77800.7816 165379.434 119769.1645 42438.521 43718.5747 55239.7348 36035.2797 71156.2489 79273.6152 149450.3383 4358486.0951 1011813.1006 68809.7962 189576.4129 70773.5944 70773.5944 86560.5654 139533.3159 43150.9355 65181.0294 184420.031 49756.5338 99194.3818 82587.052 58358.791 136475.6354 161639.4681 124920.6355 105219.1727 33570.7894 59174.5033 76257.7144 84845.1663 185384.7397 157272184 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SN223/29 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 14944.0174 8414.9715 4544.9332 3621.5474 57527.6062 4859.8537 7022.6599 8256.9408 8539.5753 4739.4294 7646.9126 7099.5533 9602.7931 4314.8641 4314.8641 7392.1337 12833.8227 8717.9736 16178.2182 10866.5245 19272.2704 4982.6873 5061.1637 13731.7246 8661.1521 35774.9385 9050.9955 22714.5022 6716.544 8106.1276 6458.2825 6312.4182 16253.6202 319414062 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 12217.7261 3449.4327 6175.7266 5031.5833 6392.6522 4266.8703 3726.5878 4511.6717 2659.6012 8193.6588 5192.3186 4710.6 4300.0538 2503.6584 5370.0742 3233.1344 7969.9261 6060.1712 6902.5323 4271.4989 4868.0132 3885.0223 2153.3811 11594.6845 154686168 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 54196.5895 17521.5401 13442.6634 16332.6734 34204.9924 12613.5083 52724.9965 52540.2141 17862.5533 18124.2257 10618.0975 516182.0759 24567.4132 17261.7323 12227.8739 11227.1357 11227.1357 117304.572 33561.2738 19589.9314 66019.1027 26227.5888 31799.3783 13875.2375 9811.1713 25540.1296 8362.7202 35184.1804 15223.0304 22384.8992 9463.6284 20298.5688 12966.4225 24892.6078 32034.2756 295314226 assa Organic Remediation Other Hydrocarbons NA uncultured delta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 20145.5457 13904.5481 24020.8741 61442.7469 23341.4264 22088.115 19259.993 9904.5145 13785.8655 17704.7466 9566.5074 585407.7293 22813.7744 29581.5436 23040.1342 11885.9335 11885.9335 17090.7594 31787.9174 23416.4748 19931.3021 20228.5377 50754.707 19275.5179 12344.6953 35523.8834 12682.6114 61815.8338 25624.2373 30828.346 15567.6595 15163.5314 21023.477 12663.9139 32083.8284 52784460 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 13247.2423 6074.4528 6289.945 5940.4459 7479.3364 3101.8204 7913.7841 10536.254 6391.0894 208704.2172 11037.6308 10423.5563 7157.6513 4179.5142 4179.5142 7392.5128 10631.8819 8046.8151 11485.1349 114340.2269 26871.6917 5098.3535 6985.5936 14002.3897 13245.4352 15377.26 14140.9324 15805.4509 5997.1842 6284.5236 9406.8837 5732.899 8505.3788 315480006 gdh Nitrogen Ammonification NA Arcobacter butzleri JV22 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 4686.5923 2634.4833 14121.4861 3214.8962 12766.674 5607.5811 421953106 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 70935.4991 335751.8125 53404.2468 64697.2003 33554.2369 7905.9893 35780.8587 48934.5756 46880.0033 51851.2213 59334.6039 36959.1878 1073185.8094 53311.4975 103890.3353 52168.651 33487.8356 33487.8356 33100.3385 78982.1076 47241.154 48854.0833 62661.7844 56989.8238 33247.6447 42050.8727 49397.4748 33229.5442 172826.7987 39995.8526 63772.7057 31811.7657 38646.9964 59769.3352 37413.6134 181794.6681 299738671 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 12902.6057 23405.762 7405.3871 44325.9117 30425.8188 16767.3007 10227.0703 21163.5535 5444.959 8120.5922 12902.689 7595.4678 252039.0179 11577.205 8222.0728 11431.8014 17620.4614 17620.4614 30238.1047 23628.4609 616108.9563 10123.7086 21422.5177 10440.1834 9580.2758 8456.9829 24079.0661 12953.5602 21890.8935 14785.8839 17431.3209 14782.4115 11944.5421 10175.6608 7369.8811 6439.0715 257296800 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 5121.7774 9552.6242 3572.471 14282.0492 7189.3597 4972.3556 5187.7008 3316.3319 6313.4934 6339.787 13887.9931 3042.1005 2899.8042 4305.3669 358239725 amyA Carbon Cycling Carbon degradation Starch Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 9702.4151 19240.2112 5322.5647 2764.9815 3878.3566 1943.9742 4472.2111 5335.1834 4961.126 107001.2085 3907.2775 5422.2602 7841.5978 5755.0612 5755.0612 3706.7896 6249.8903 10968.5999 4260.2815 7995.1614 4848.8575 4383.7419 12257.0564 2160.7862 14067.4375 5407.9102 10291.8622 2058.5953 5284.3926 4454.0182 2214.015 302405513 pel_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 14265.0122 6776.8897 30936.9504 9997.9317 4589.9589 3267.2611 68928.6485 4010.4382 4770.9889 16851.4764 4690.6526 199911.7082 8672.2481 9053.5129 11740.6085 4186.5408 4186.5408 6552.7067 11152.4041 7854.1442 464790.6055 7647.2073 6399.7997 9572.873 5095.5118 10464.2526 9926.9243 17929.3237 9237.3698 11704.3094 5215.8813 14928.6169 5550.5366 5137.8522 12414.6503 404420043 vgb Virulence Antibiotic resistance Degradation Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 7797.3817 8399.0069 69821.7511 7322.6441 7196.443 5656.2522 48846.8929 13755.2475 113943.3267 11152.6665 9934.1963 4078.5568 4078.5568 3209.9898 11835.7985 7772.1749 5952.1336 8150.5864 12803.3616 3003.1152 3691.2227 12509.9437 6520.875 13713.5687 9600.2855 19834.2145 3522.3699 5708.997 6055.0812 3637.5858 228760199 amyA Carbon Cycling Carbon degradation Starch Bacillus mycoides Rock3-17 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 5146.9937 7910.6167 3230.5685 2485.2637 20312.9541 83387.9667 11331.4709 4317.4171 8010.8207 4879.6277 4879.6277 7606.1657 7403.4759 6856.0075 4720.341 6571.638 9840.097 5266.7647 6630.5641 3449.3453 3943.9017 2941.4085 261360538 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 19753.0139 33168.0365 7759.6345 18049.6226 14277.3353 7620.1299 14074.9859 35978.6551 14019.1906 13528.3297 8459.0577 333536.3968 15711.0735 16732.8546 13549.0664 7940.5829 7940.5829 10571.5786 20811.7875 22773.9594 14071.8115 21075.5597 16973.4255 6947.5176 16299.1397 25026.2518 8887.3777 30575.3181 22800.7602 20180.1044 8095.5847 14673.7135 13416.5905 29822.3568 15448.9204 384080531 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9165.2149 7545.1796 4843.6766 4438.135 3714.9331 11322.494 9377.4165 133410.1997 3976.8078 71946.1188 4869.23 4869.23 4360.7824 9333.2114 7985.3495 118262.0595 13051.8486 193693.0653 16672.6526 17740.5623 17433.4275 16028.6258 11303.6949 8457.3744 10024.7351 9388.6281 6355.6749 5443.1743 6515.7321 8179.5667 1255504 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 154644.9756 10250.6643 82259.9316 1397475.4208 193821.4646 35164.0788 49789.6799 108008.1053 71434.3975 91306.8863 67697.5602 98078.7008 1545283.7219 95383.5281 141052.6241 156551.2435 129491.0438 129491.0438 49948.9786 122164.0404 77304.3789 594018.7595 89073.3044 76358.5002 43202.4711 76312.0653 78239.9167 64245.541 241213.7801 90586.2865 100623.537 48011.0105 82115.9337 141641.051 88863.7343 96338.5508 311888478 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 44466.2921 15579.0358 18157.286 30988.0384 9154.2126 11409.271 21569.8886 20150.9467 13589.1618 20200.5492 21592.9873 389120.0289 18780.7776 31772.0776 39161.5278 16574.1708 16574.1708 13892.7904 27500.5286 19490.6665 16075.2004 15881.3318 20668.7706 9340.3623 11770.4632 32621.8926 12343.552 34683.5314 25370.2535 23073.1072 9979.6783 15034.1701 17956.9229 13008.7449 19810.9179 56410462 fcba Organic Remediation Aromatics Chlorinated aromatics Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 5933.1196 7763.5495 9539.7194 2075.4141 2337.0372 4815.4481 8052.6159 3571.328 171556.1318 7298.2239 8560.59 4000.2721 4000.2721 5675.5271 17560.093 7578.6832 11834.7367 6701.3027 8458.9116 5835.9896 4025.15 10747.0073 2846.3015 15112.0805 10377.3653 10241.1211 5264.9184 6031.8765 3320.9408 9881.5951 242121157 dsra Sulfur sulfite reduction NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 4901.7331 65739.8286 4000.2497 2396.2111 4513.9746 4563.889 101396.8377 8164.3254 3847.0814 3703.6049 2610.0899 2610.0899 2573.4174 7212.4149 3976.9846 5320.8002 4797.8867 5284.3835 2377.306 5564.2852 2660.4867 12616.5263 3706.8148 4635.3025 2020.4935 3822.4143 3058.6846 3046.3075 8481.084 339289343 poba Organic Remediation Aromatics Aromatic carboxylic acid Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 5984.3147 2942.6957 2849.1725 4400.6865 4831.3509 4409.2503 7803.9331 4358.6395 5471.162 11788.4774 2468.9299 4361.9718 3420.0452 229917905 cellobiase Carbon Cycling Carbon degradation Cellulose Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 4965.0979 8178.1408 8284.155 10849.1041 3278.3344 6615.3655 6719.9501 5695.7592 130398.5191 8220.4956 7824.9998 2413.4803 2413.4803 5382.8937 11229.0395 10518.1499 9859.7872 9171.634 9249.269 3792.7414 3868.8835 12673.6111 4469.067 20656.9397 11623.2836 11732.5709 5985.0544 4223.188 5529.7978 8643.0846 14481.3286 336324277 mer Metal Homeostasis Mercury Detoxification Flexistipes sinusarabici DSM 4947 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Flexistipes;species:Flexistipes sinusarabici; 3779.1241 6323.3509 4178.977 5006.5272 358752022 RgaE Carbon Cycling Carbon degradation Pectin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 25740.0493 24255.8759 30065.7648 35437.0151 6063.9469 269948.207 17769.0536 14395.5388 28244.1596 26286.3342 13458.0809 686517.9617 28877.4483 27097.8716 24160.2744 13577.559 13577.559 18281.0873 35143.9595 32800.8391 23899.2943 46229.1472 38714.2318 29737.2518 13227.6181 33634.8288 18098.1283 45458.5516 27795.5224 32425.9044 20029.0156 22604.1294 17252.9674 12286.2418 49104.3417 332377340 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5665.9264 186459891 amyA Carbon Cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 4796.5299 3985.393 8571.0669 4303.3028 3006.6901 81584.6887 4989.801 6178.9745 4719.2006 5159.7824 18423.0931 8039.2099 3492.4763 4263.3513 2314.941 262081675 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 4259.5045 6157.5496 12138.7564 2482.3228 2628.3223 3588.9116 82171.1388 5517.8506 4644.4037 8940.5348 5429.7482 11933.6064 2738.0453 6269.8662 2464.5596 9019.9804 7415.9266 7539.1679 2936.3912 3124.2552 8541.8889 2951.8424 5845.2788 145613742 cellobiase Carbon Cycling Carbon degradation Cellulose Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 12298.9022 22714.2656 7448.6251 11770.189 5387.7695 10869.8852 19888.1664 11739.7414 331452.7085 537698.4943 10530.3443 6867.0103 6714.3548 6714.3548 45697.0163 13740.6934 24317.1598 11459.2879 13944.2212 10814.2578 5850.1265 15235.0669 17143.0216 24560.5766 32395.4316 16490.9103 31477.0811 6329.266 10981.8578 11905.0226 14687.1706 18872.2521 358456673 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 18077.1002 6175.5496 14496.0021 9875.5419 4384.0009 8437.446 4082.699 8932.6822 11561.8909 5787.0699 198879.0406 10874.2363 10883.7097 16618.6302 9435.7694 9435.7694 7837.4993 13810.5713 12850.5254 16824.8812 18149.2766 16442.4915 8710.0013 17545.3047 18597.5385 12959.981 25317.9833 23154.8794 25097.9501 9372.8722 5295.24 12070.8023 7796.0431 23877.0887 146310532 amyA Carbon Cycling Carbon degradation Starch Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 10951.9351 57470.1092 13543.9803 7212.9724 4716.9403 11361.9583 12486.667 7039.2222 28208.2162 14903.0685 5189.8416 223851.1231 12312.0242 15340.6895 8341.8774 6865.0164 6865.0164 7734.2534 17248.9508 12427.0398 759947.0919 18361.1042 17503.7139 5647.6238 13302.9062 14418.2681 6779.7058 19382.4252 14195.035 14348.5625 7455.5557 7537.0495 7336.5801 7122.0996 35004.1885 288350717 arsc Metal Homeostasis Arsenic Detoxification Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 78321.6721 18752.3176 213665.8562 35999.2252 84301.0715 74732.154 33740.0906 42285.6415 17248.6847 30683.2513 53715.5324 42044.1782 1115956.8417 39009.5706 65481.0341 32526.2566 28282.4639 28282.4639 26138.1743 49521.2567 29610.1343 142768.1121 62478.0171 138696.9846 22338.1864 26298.7235 76765.9507 48496.2474 97720.5733 69459.2585 53042.8909 53715.8071 33414.7596 37322.0624 17290.4938 45018.5275 257455269 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 1186436.6709 9693.824 5832.8858 3351.9208 3586.0003 6056.9988 80214.0704 4605.1663 2808.051 2808.051 3880.529 9917.1532 7814.4806 6073.8145 8156.4008 6070.4341 6667.1962 7162.1899 15599.4907 6763.9751 6881.6086 2895.679 4749.7397 7329.5962 2951.5368 11393.7844 56678835 pgk Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 42269.1899 28313.7034 26868.5825 43605.6549 98369.2586 38326.4304 21989.6697 27870.1233 16483.7594 45280.4948 28432.8546 31832.5137 616924.3974 37264.0278 53251.3707 46852.8857 35796.0113 35796.0113 20905.8071 43987.7954 26628.1269 23937.2578 21837.537 36963.7565 14641.5004 20417.6772 42527.4354 20672.7909 72937.9307 34450.2511 48403.8654 21609.6102 28134.3306 29187.6909 13326.8656 54629.1998 255078694 actin_Viridiplantae Other Phylogenetic NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 44714.5216 18523.276 9659.2876 72908.2957 25142.3558 16009.1893 19981.1171 71228.0553 396332.0217 89163.6181 57444.9821 47474.8318 74099.4548 74099.4548 19657.1309 110173.0737 35849.9194 126421.7266 45692.0995 16675.1428 35605.8062 74558.1167 29398.5474 144667.7403 29466020 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5378.0372 11943.0271 2293.893 16484.9128 4377.2907 21341.9963 106159.3178 3780.8781 5771.4538 4577.4291 3139.5247 3139.5247 6609.9352 28963.6944 109630.7497 22584.7874 8109.7749 4840.0352 3124.8266 2592.0041 6678.6468 5978.7373 2568.6992 2718.3763 3032.2245 4556.682 339719841 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10471.2622 578173.3312 6375.1647 65309.9787 9742.927 6451.6064 7244.3197 4042.1885 7691.7426 8039.2502 7118.0951 235554.8139 7643.6488 11614.5491 3713.1834 3713.1834 23122.5912 32900.6608 13601.1202 12936.8984 9284.8959 17721.2077 4494.3528 10421.0607 9887.6814 15191.4392 24200.2831 9533.8122 12442.5587 13140.2607 8484.7808 125758.2481 6710.6495 17208.259 385183957 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 62273.4227 12718.3925 179674.689 37179.2123 45042.1637 21759.1579 22471.7897 31878.6408 12636.5355 15136.8615 19319.9148 13766.9985 467889.5231 52228.4027 36489.4234 61774.9577 30105.9342 30105.9342 16542.0979 25656.3097 21371.102 28609.2451 39058.8983 30596.0731 19476.262 20390.7129 35289.0974 47951.3515 113680.5961 38316.6236 61698.9494 161101.2522 29650.4814 25052.1404 19314.5176 55448.3866 390618153 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 45079.0415 18516.8427 152690.0625 27601.9516 19253.2836 17936.7774 21384.674 24153.237 36520.5638 32875.3587 779975.8633 25050.1497 29456.8903 90643.9939 28375.4647 28375.4647 19962.2091 65814.7708 27266.1073 34552.7687 132897.2445 28522.4354 19994.0425 23042.4179 45742.2563 33953.3522 113584.772 20632.3374 46022.0073 29073.3791 72675.5607 18573.855 22599.7723 38526.3477 330991032 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 4674.0189 10661.0725 9183.833 4725.061 2348.455 8181.3419 22925.5503 2852.5576 114762.5453 6867.1552 5464.2583 4505.1453 4273.8677 4273.8677 4083.9076 12457.5886 7620.2335 4799.6506 8925.5907 7508.3117 3543.524 4345.1726 11341.336 3071.5198 13012.5305 9751.306 9373.86 4066.5451 3984.7257 3832.2846 4422.4971 9951.1171 159026358 Sir Sulfur sulfite reduction NA Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 7693.0192 2413.7953 5861.1241 5099.7622 2931.3495 12912.1177 3041.5753 84254.0144 4223.5367 20664.2881 7152.935 7152.935 4497.4391 6445.1866 4727.8676 39607.0199 2673.5628 2828.4904 4290.0755 7679.3445 4118.1955 5954.8103 3237.2314 333487322 pcag Organic Remediation Aromatics Other aromatics Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6669.196 37622.6366 9110.0034 8117.5495 9331.2203 3438.3808 5211.6805 3634.9083 7764.0446 2812.9316 52871.6422 4864.9585 2548.4164 2548.4164 3398.973 7745.0321 6392.0589 7046.86 6457.6007 8779.7758 2732.1006 3312.5555 5086.7393 4253.3638 14422.0142 56770.3461 16200.4553 4420.885 3948.3347 4872.4365 3753.4983 5363.4195 108797491 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 56049.8162 8292.878 10242.2773 2974.3851 4505.3343 2577.9976 5299.6411 11762.138 2837.3088 9554.7118 5937.2723 2109.6267 2467.8786 340620342 terc Metal Homeostasis Tellurium Detoxification Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 44159.7408 4567786.5683 1580789.0604 3580.4128 5336.1402 3282.5973 2621.9563 2630.7001 19180.8099 1297246.1122 219677906 rd Organic Remediation Chlorinated solvents NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 6587.4464 5738.6401 3363.6957 4162.9587 4651.1086 5834.0822 3110.1474 90046.1083 7350.3472 9734.0823 6283.4819 4251.9368 8407.9022 8143.1895 5513.6207 5889.961 6214.6767 3365.3423 2694.3047 6234.6904 3638.2444 8180.6434 5365.3683 6407.1526 3572.9625 3115.2541 4804.7229 2514.6439 6347.5533 327545677 mer Metal Homeostasis Mercury Detoxification Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 49933.1233 2740.0245 11059.1474 161501.4516 37255.1847 4536.8856 19245.8401 143471.8092 4124.0485 6871.2555 8743.7887 8121.3587 8121.3587 8229.9306 19160.5474 9476.8682 17006.8948 6572.9389 7991.4667 2175.9648 6788.698 14040.1645 3617.1755 126734.2824 52472.331 9480.8562 1875.6399 24185.347 6303.0628 5276.121 4818.7379 289705217 amyA Carbon Cycling Carbon degradation Starch Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 1084194.5156 36064.9871 131575.2143 92693.4491 212032.6193 168539.3569 95370.4387 346196.5214 190111.5362 71692.2537 486721.6211 188808.886 5049603.3663 174893.7214 178880.6112 187516.5353 149389.4918 149389.4918 89485.4798 179604.7144 96551.873 221809.4449 346823.0316 167066.2425 131814.0073 90837.1357 282173.5974 120515.7605 234883.9492 504221.7329 214564.8233 104406.9319 109894.1538 200356.4166 112194.1295 121547.1737 377558716 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 13371.9668 12923.2455 16546.1358 2601.3239 3157.6977 2790.9173 17620.981 2996.8627 4331.0502 7559.2332 7173.5405 7173.5405 3634.7225 17827.5301 24573.1842 5285.9603 10088.0736 4199.323 4847.4547 6671.0284 3437.1617 11764.696 10167.2419 6239.2348 6733.8833 4609.072 3097.0438 373851875 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 53080.5999 30619.5943 32670.8716 10696.5824 16071.6722 17617.5526 32924.8471 51342.5713 32169.4499 29646.5611 28867.6763 34386.3499 470174.3927 29433.8674 26599.0664 34153.4644 43122.1854 43122.1854 20487.8586 101500.3487 36290.5191 26049.0232 45947.6913 99569.2202 36165.0314 37423.0545 50197.3205 63878.5269 135805.309 43842.0206 54512.3066 39393.1286 66609.7438 51760.9095 55871.3969 44559.3606 157911592 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 17073.5203 5389.339 10732.1867 8799.527 9415.199 9794.6846 59171.0327 48345.1901 230242.2773 12271.7579 8017.363 44932.5345 9666.8938 9666.8938 14605.0533 15690.412 10986.4681 21182.2864 10301.6304 14385.0761 9651.4214 5477.1777 12723.6863 7579.3474 18125.9716 17237.4285 12392.1491 8937.231 23324.3232 20198.6391 7246.3199 15111.5779 45386147 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6925.571 6075.2679 8401.0092 4235.3451 4151.0789 4427.4964 10369.0698 57961.3382 51878.1906 19934.2262 4247.641 4247.641 4282.775 18932.5552 12334.2025 5497.1309 4994.0618 16662.4267 3654.2568 3455.71 6584.1685 11634.5457 13533.5476 7349.6922 8417.838 3606.36 5321.0039 7862.7578 2983.4695 4773.259 63029754 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6952.4825 10819.0472 3021.3837 4830.2814 8542.292 3450.2373 5753.8758 5312.3626 9442.9526 9442.9526 64047.8145 9324.1028 36852.8779 8600.2323 7224.0991 2337.5065 6087.6259 9471.2989 27477.1017 17046.4071 6302.4798 120849.9887 2577.9606 17750.4895 8745.2621 6030.2881 328950946 amyA Carbon Cycling Carbon degradation Starch Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 11794.6562 21688.0425 60829.4902 10985.9139 18546.3282 22545.6848 4440.2791 12650.899 38986.1244 16119.2676 369369.7231 14467.1892 43585.5693 24070.0044 16637.8411 16637.8411 10631.5648 22971.8603 28088.1828 17349.9956 9517.1999 21168.7383 7642.3907 19211.6317 41461.6899 10469.9752 72008.4006 150139.7992 34814.3532 12720.1652 14191.2376 13488.876 9261.3007 13544.3506 270281306 badh Organic Remediation Aromatics Other aromatics Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 6770.7001 6665.5401 16227.7958 271128.5672 81014.4013 7434.9692 4910.8475 111884.1111 6370.8105 67590.9847 7382.417 12892.2157 4378.9556 226925.4559 2800.2351 398039479 trze Organic Remediation Herbicides related compound NA Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 74957.1282 25748.4664 16180.6241 49512.8081 12265.3489 10144.3562 47141.568 35651.4403 25084.1721 56878.5866 74026.2935 37833.4237 755079.4622 130697.3685 44059.2854 55687.899 35725.3919 35725.3919 45622.8709 105526.2499 30138.3604 59416.7993 120972.1033 35640.1528 27157.3089 35106.2583 43537.2471 40231.1593 180754.5466 129997.7148 110873.1266 24035.7494 36902.1625 46130.3702 29503.5474 50809.9896 373854786 terc Metal Homeostasis Tellurium Detoxification Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 55153.4114 38986.9165 9921.3936 7086.548 2540.8207 8502.2137 3391.0361 8851.6614 6555.6851 11962.2309 104593.2371 6841.6776 11532.7091 9324.6063 16391.0027 16391.0027 4221.623 71763.7449 9059.0908 13404.512 8972.5123 15184.0856 4606.0626 6914.2492 17237.3977 4514.2356 29730.4584 9390.4499 15600.7601 6558.1322 9861.5315 12460.3842 24257.8348 5243.3347 324971266 amyA Carbon Cycling Carbon degradation Starch Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 7951.7561 7172.974 3650.0834 2160.3783 8823.076 3722.2934 3640.3151 2492.5704 5539.3725 6938.098 2578.1509 3132.9748 3371.9794 5791.566 32487224 linb Organic Remediation Pesticides related compound NA Nonomuraea sp. ATCC 39727 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Nonomuraea; 8362.9331 1058242.6599 17301.2464 6285.6143 2816.9029 2271.358 3823.1146 6251.28 2687.1719 91520.6592 4380.5547 4546.2468 2959.1607 2959.1607 4803.681 7346.9162 3620.8488 4550.7823 7237.4089 2518.789 3548.1163 7455.0251 2521.7468 9893.7474 4002.7683 6745.6671 3471.7919 3989.4921 4440.6526 3236.2568 5270.5643 158251620 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 21670.5046 11142.9259 15935.6891 763181.2206 8668.3746 4387.9142 18940.8818 11039.5109 19639.7189 34844.5748 17190.6679 197109.4294 13563.5497 15512.8284 45264.8091 19845.4743 19845.4743 10388.4653 29143.8192 17486.8277 18649.2137 14639.2658 13248.7715 118617.0746 14711.2202 33563.0224 145908.7441 50061.247 18555.059 47168.6956 42624.013 21462.9409 57995.6817 13340.1904 246400.4028 358637165 ben_bcla virulence NA NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 56320.723 2275103.7625 17164.1153 76926.0543 41666.2683 30107.7442 39907.4583 21052.0228 28057.4533 44980.4374 54398.3608 770303.3175 68291.345 42814.0354 73910.5764 88050.1099 88050.1099 44962.1139 163550.7008 30491.1749 960533.7633 87002.4287 35359.1391 31338.8705 26809.5801 34967.8725 23786.6199 102629.7706 144254.1597 39026.9958 23570.8474 42398.2306 40329.4708 28792.6897 32645.6044 7649286 hbh Organic Remediation Aromatics BTEX and related aromatics Sagittula stellata superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 6226.4349 5980.3447 2186.5305 29672.8666 3682.1451 7006.8512 18721.8214 5204.1245 5820.6391 15382.4008 7192.3503 3934.3448 5755.2844 269979645 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 10566.5956 7153.3092 16512.9472 4887.8135 4567.0786 6625.9103 8884.5157 5772.4735 111731.0967 5550.3198 4828.2723 2859.1235 2859.1235 4739.685 11950.361 10274.5265 6663.5501 12710.2402 6804.9519 3116.0047 3873.8559 12978.0288 5152.1714 15209.9856 15731.4361 11185.1323 4373.5073 4133.7484 9313.5233 4168.4142 9751.0825 262083603 xylj Organic Remediation Aromatics BTEX and related aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 4538.3974 5690.9013 3780.0611 5432.4674 5551.2893 2835.122 8093.8916 2961.7831 88316.4245 8740.8493 5387.3897 6312.7864 6312.7864 7193.5095 5911.6785 6273.0687 4982.4961 18724.9779 6616.1917 2788.2803 2934.6742 5729.9837 2909.4217 9010.8418 7805.808 10726.9527 2448.5868 3099.7428 5148.4824 2784.8953 10954.779 325297828 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 12344.9849 5828.5189 13659.5462 6500.9294 6163.6233 5548.2175 11631.3684 13416.6621 8217.7762 287320.7021 15541.2318 26137.1883 8126.9285 4151.5833 4151.5833 8706.3419 15369.5398 12972.4161 14261.916 16387.9678 11713.2796 6447.2471 7212.1173 18571.5861 5166.5767 22168.214 14139.8908 16752.2833 4845.4452 7749.3555 10052.7854 6968.5633 25897.037 52208951 cueo Metal Homeostasis Copper Detoxification Burkholderia pseudomallei K96243 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 32750.3045 10400.2133 7747.8575 5629.9916 10769.9704 8655.9771 9000.2053 5059.8262 9003.756 101195.4337 4174.373 5378.223 32211.9951 39874.5115 39874.5115 27572.6192 7706.4375 18259.9537 4222.3934 4032.2045 7517.759 6871.0028 4353.9004 25314.0731 47307.7855 11919.9351 4008.55 6912.8128 3987.4307 6992.9933 404216911 chnb Organic Remediation Other Hydrocarbons NA Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 48817.2527 10050.9294 7150.8888 47697.8003 43663.0525 6589.8566 8189.6628 8128.7435 9201.5595 9445.3763 435364.4406 11025.2883 9412.6426 16543.5321 6033.1563 6033.1563 18775.6587 19439.3601 15908.4756 5608.9981 20381.104 9886.2761 17152.2524 10187.9567 19820.116 5178.3363 20685.1194 13039.339 14918.4598 4813.7232 9576.256 22559.9464 5845.2029 10764.9372 133778514 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6561.2158 5108.1248 6313.8063 13539.787 2042.7584 3050.2101 5716.7793 3126.94205 287724.8919 6106.5731 7685.08935 10417.78985 5161.5742 11508.568 10854.9498 6356.7105 9743.8876 10597.7211 3791.5243 17774.0833 13963.68255 9868.68405 7970.51275 6770.2323 6039.12265 6758.2871 4391.0811 10775.78285 121589951 TIM Carbon Cycling Carbon fixation Calvin cycle Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 269548.6631 53275.531 114094.7749 74775.0309 115754.6509 19350.0113 88098.5873 86032.2125 178286.5695 91955.8423 67076.7756 82067.2227 2009141.5493 118894.5173 156724.3425 422672.7641 70459.2792 70459.2792 217905.7777 135023.962 63256.8519 90316.2155 92899.631 113672.2353 52189.127 45974.6264 141543.6684 59362.5338 171766.3525 78739.2879 114501.6653 53517.1859 83196.9603 62566.062 49381.5795 200418.1598 209519935 cysJ Sulfur Reduction NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9016.2239 5364.1487 75692.3893 11350.307 9389.1572 3967.8477 11636.8443 7305.6004 23772.7425 106462.4541 23948.3772 21005.7347 7080.3661 7918.4585 7918.4585 5901.3735 14434.8389 10567.6803 4714.9197 11945.7154 6147.7209 5737.3073 7137.2042 10868.4826 13724.6195 16094.7554 22291.2493 12340.7042 8629.9726 5745.3186 6766.2576 7586.5174 15621.453 283458650 ppx Phosphorus Polyphosphate degradation NA Rothia mucilaginosa DY-18 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 21683.2328 8328.0649 26361.5259 13110.6999 4435.0871 119099.5093 8282.6776 10267.8 18453.1433 18448.409 140294.6111 12780.3838 14168.62 113901.7197 16614.3142 16614.3142 11100.1566 37661.6122 11339.7206 4270.8385 23670.9852 17972.0216 14898.9694 14806.2672 17021.702 26286.9125 37073.7528 35176.5128 44270.1054 7058.0118 17089.4871 16996.1446 6841.4233 155979.0274 126470038 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 41057.3819 48293.218 9077.4891 8641.3741 18051.4801 5068.2064 11185.8405 285559.1636 16181.161 13919.4846 26867.8955 19775.8759 344538.6718 16691.2868 13681.4316 7652.0415 7360.485 7360.485 14041.7926 25756.6621 16630.0411 19476.8416 26417.714 20056.8185 35019.4413 15185.5474 17939.8235 18404.0784 61509.2994 9362.4181 26982.8468 14757.5488 15222.8782 40326.96 13877.3978 22864.7233 254451876 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 61390.0016 69704.4535 17694.2362 17582.9438 12636.0853 156326.3574 25334.562 93384.4284 34452.8073 34252.019 51434.8843 672117.7504 53042.5502 31646.5545 63152.3235 51709.0711 51709.0711 47050.7403 51940.1897 19706.5972 48000.253 52647.8549 51858.0074 29015.3506 32675.7826 58843.4813 180775.2978 101134.8186 29332.6267 39467.0888 69765.3525 29683.7049 103816.3082 34453.7159 149736.0772 68345139 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 55195.0057 27444.458 30240.1718 42177.123 15849.564 25690.9087 33232.3631 25275.7563 39276.8873 60503.0934 199678.192 597721.5031 257661.7803 65306.4726 87811.5374 122501.6336 122501.6336 21503.9973 56536.0848 26149.4777 76220.2801 85021.5515 28605.022 42436.3293 46608.3297 53229.616 46664.3732 74461.8981 29309.7757 59903.6348 216753.5356 48475.7678 77351.7265 40516.7972 28129.3471 398656531 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis DSM 17395 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8837.9823 7926.9155 8090.4279 8972.657 7641.5302 3717.1313 9152.1334 7418.5442 4784.3683 241289.4825 8901.618 10834.1694 4619.6451 3888.9317 3888.9317 25179.8013 15533.7615 10648.6156 15236.6424 12137.3788 11133.8606 12843.4619 5053.6989 13722.0955 12698.2915 25489.4189 16824.2632 16205.2414 6280.896 38250.9197 10889.2554 6213.9001 14677.0235 385675433 catechol_b Organic Remediation Aromatics Other aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 4115.1096 8753.0044 6544.7143 3491.171 3491.171 3024.5999 4018.0797 4071.8566 2898.495 2571.4434 5956.013 2005.7297 21448.8971 4772.0594 14907.4145 2986.1574 5968.4187 34017100 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4919.4284 5674.3299 4687.9359 2959.9639 5564.1422 2527.4119 3399.8794 4863.5156 3052.3587 8274.2061 2771.0496 2771.0496 51112.2552 8507.4266 7760.0341 5356.2134 4564.4263 2526.8179 3077.749 9899.7664 3947.7674 13326.3709 6386.9189 12100.8861 4632.9544 4703.9134 5776.6776 5254.721 84778373 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4384.6461 164110.4379 4198.9234 7888.4839 3333.0532 4969.4952 2527.2766 3766.3369 10133.1216 4020.9082 89479.3283 14285.4573 6446.2197 8142.5336 7073.5345 7073.5345 12177.4351 5401.9145 7137.464 72075.3957 4036.7122 4679.2209 8076.1235 2579.0011 12254.831 6040.9737 17330.3054 3946.2209 5256.609 3817.7793 2653.1552 4553.311 83749274 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 9681.8637 11573.314 58476.7455 2264.2259 49511.6593 3221.4168 5751.0453 14639.0865 5294.1093 289561.0249 11302.4284 8310.8873 13141.0401 5752.4053 5752.4053 6444.0138 11224.9498 11408.952 36763.9121 12392.3351 7614.7411 3864.1994 6423.7485 13858.6943 5307.2032 18013.5235 11248.6465 19008.9798 12512.1615 11748.9354 7339.3396 2601.7397 6968.5413 194340114 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 17908.7006 14519.8781 7687.6187 14174.6465 11114.2473 9503.5796 9657.9551 5134.9636 12171.763 14960.3231 7967.7249 623121.5733 17294.1583 14571.6293 23363.5889 8592.8015 8592.8015 12324.2293 20929.73 20825.459 15181.3701 17291.1263 14283.799 7726.0952 10424.3503 18626.633 7907.3738 34359.7321 15893.8583 24189.1378 8054.8758 9693.3036 14890.8327 7128.5181 19136.0462 288942021 terc Metal Homeostasis Tellurium Detoxification Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 47464.2596 5336.9137 6382.3569 2674.9113 3354.4337 27967.0489 4200.852 3736.9613 134880.8279 4949.0537 11788.3714 4131.1093 5848.593 21506.7695 25341.8203 9586.779 4588.7638 11881.1489 11054.1847 6940.2594 8700.8881 2612.3067 4454.4586 4237.9086 2296.3787 76058454 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13461.6658 5619.4053 7767.4978 6229.9779 4888.2849 4743.67 8737.9055 24023.8953 5794.7835 147749.7478 7028.0379 15619.4823 11983.1853 9283.2805 9283.2805 6019.6518 25914.0028 10368.6772 72871.3844 11889.9232 8939.2647 13539.4858 11766.2884 14149.8881 9993.7484 21913.5565 13221.3875 20466.6849 10728.1708 9794.668 18266.5834 9522.833 11695.2825 344997949 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7050.0831 4190.239 3915.6521 7380.5706 18333.2236 11776.9926 6444.145 82779.4359 3930.2644 4508.5512 6708.766 5207.1358 5207.1358 23028.8952 20043.0037 10659.9996 8353.1878 42452.6684 8568.7155 2905.7899 10470.0774 9031.2581 7765.8787 15127.6665 10785.4073 22192.9617 5322.8158 31334.9617 7626.6981 10788.1768 38147.6368 310825953 dsra Sulfur sulfite reduction NA Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 13095.0664 10065.3909 9346.0317 8814.8656 7674.3731 35510.5556 3646.0597 24255.9164 12002.5845 27258.5125 144508.9669 7779.0695 20889.0599 19875.348 21785.7926 21785.7926 9949.0031 31545.5355 10148.8266 15387.5525 15000.9517 6913.6761 8403.8352 18490.5463 25304.032 60899.3828 36119.5244 14441.755 17844.5938 32856.1563 13336.0895 25358.3028 7987.959 41145.9503 374657060 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 65544.9299 57196.6443 8906.1079 15033.867 19861.275 9601.1944 17816.9176 45381.4116 26376.4351 22440.9733 167967.1359 11229.2665 13759.1407 14959.724 13264.2889 13264.2889 6020.1733 65366.0279 14721.3364 10983.1666 21900.3403 11941.1457 63510.2023 31734.1425 13182.6002 41938.4728 89689.5482 21962.8428 38755.0109 8061.4944 28668.9735 19135.4188 8713.3628 14904.635 148807326 metc Metal Homeostasis Mercury Detoxification Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8754.4067 5527.4642 31890.5093 4888.4018 7448.1616 2733.1047 6428.1566 8909.3561 6342.8864 171763.6333 14873.2781 8602.0474 5918.5831 30931.6913 30931.6913 6260.19 30458.4708 18177.6938 13730.3981 10779.538 7956.5167 5514.2614 33300.6155 27311.8207 4401.9093 787003.5155 13585.6776 18064.9333 6691.5884 9916.9575 11360.4473 7107.6412 6081.2973 254451080 pula Carbon Cycling Carbon degradation Starch Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 6289.1819 7456.9953 12368.1159 4733.6079 3074.4662 82873.4283 4362.486 6222.2689 2241.0984 3451.5542 3406.7391 334117756 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 11486.4349 2611.5363 3591.5867 3066.3361 4609.0697 2977.9497 96951.8425 8956.8418 2600.2132 2600.2132 5469.9199 7196.2808 4595.7646 8046.2052 5569.2283 3066.7356 2741.5876 12074.5165 3182.5614 11023.7326 8247.2352 8619.6865 2773.9071 4039.7497 5236.247 3298.5998 5576.295 146280936 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 3686.7834 163794540 merb Metal Homeostasis Mercury Detoxification alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 16538.0636 472741.4093 20259.2986 4231.9377 8864.6729 15884.7908 24635.7886 20047.8186 281580.3488 9098.3352 10624.2663 7708.1407 14381.4137 14381.4137 7070.0132 19043.6764 14336.8334 18407.8946 13710.5236 13826.6109 8367.0782 8048.6497 23163.311 24537.5195 23870.6775 25337.3543 18753.8423 9807.0643 9229.616 14035.1242 4654.0584 11357.9398 398881391 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17294.7034 8799.7406 8632.4306 6482.3763 4462.035 5793.1241 11081.8473 12883.0229 11595.5102 231645.8227 15773.9415 12610.2147 6055.5984 6252.5071 6252.5071 4172.7705 16946.5508 21868.7026 15581.4291 14292.4693 14860.8783 8073.2887 9113.8619 15896.8367 9309.299 25543.5643 18813.5773 16567.6465 5575.2429 9773.334 15202.6518 9314.6742 23336.2362 119487144 rgh Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 10696.9846 16810.4939 8232.7455 30943.3809 9850.2353 158317.9412 29872.4686 14580.119 20465.0681 13231.4206 11536.3064 9676.8711 544689.5751 22056.6304 24799.8886 13029.5387 11259.6873 11259.6873 12564.4981 18901.8407 18928.5424 23152.7363 10988.1985 21619.0756 7992.7022 9980.594 28992.1193 8831.9457 32173.5322 57390.0644 19008.6798 7136.0073 12272.9801 14946.1517 7346.23 11128.8484 116625095 tehb Metal Homeostasis Tellurium Detoxification Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 156057.5856 23972.8256 26540.7794 1389127.4619 13604.3125 6156.4517 26279.3001 287047.6906 13913.1702 35497.6879 27319.6662 29591.2573 801222.7847 32021.4138 35641.0494 32209.966 23590.4813 23590.4813 22488.0593 42109.998 35117.7686 97058.3628 66014.6281 110047.7517 103005.3264 21871.7375 622426.8236 145190.4981 62432.101 218325.1374 41109.1854 15266.8142 25703.5382 25893.7634 454283.836 330421.24 302038990 arsm Metal Homeostasis Arsenic Detoxification Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 11475.4079 13857.0263 7001.941 6381.3796 14874.8081 15663.7411 5584.0801 20421.6781 7948.041 14604.2493 187782.1013 29099.6442 18546.8572 6461.9576 6737.4767 6737.4767 7150.6098 19221.6758 10882.0634 15759.9916 24253.7034 33182.5976 4404.9809 7597.5276 22944.4093 10739.872 28902.937 12890.7019 23976.2643 8315.9606 8256.3202 9063.3538 6857.8035 17573.6824 67535593 nifh Nitrogen Nitrogen fixation NA Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 4903.2622 2151.1204 2984.4348 3472.4252 5394.2414 3267.8622 7023.0173 5442.842 7652.8821 12925.6638 3966.9248 2553.6848 11767.4539 6161.5738 6723.041 4266.8123 5162.3007 4442.0405 4210.3268 5903.8716 304336163 amyA Carbon Cycling Carbon degradation Starch Prevotella marshii DSM 16973 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella marshii; 7161.6938 9127.0473 2164.1524 2569.9942 3298.9176 4273.82 3808.2788 105390.215 6166.209 3581.8942 2618.0321 2618.0321 3225.4744 9801.7661 6859.041 11958.9587 7085.4741 11827.4588 2883.6745 8629.7483 11815.2221 7087.5245 7565.7673 2436.9462 4331.2829 2568.1261 6383.3847 29160355 exoglucanase Carbon Cycling Carbon degradation Cellulose Acremonium sp. superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Acremonium; 221144.2723 53272.1908 16679.3086 44646.2412 28773.9185 44317.8946 26741.7717 153099.9861 23091.9712 231702.0557 63217.6597 1373950.3748 64131.2408 109504.7884 61530.3713 127650.9737 127650.9737 16672.8363 73468.8239 38299.6105 115569.7352 64861.684 94726.3799 62007.1191 57561.8728 54879.08 32185.4812 145366.5982 366389.7476 47108.2467 49505.8785 82508.9428 59651.8675 29696.5009 107609.0712 390417669 ppx Phosphorus Polyphosphate degradation NA Belliella baltica DSM 15883 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Belliella;species:Belliella baltica; 4538.1274 14034.7386 5758.3785 4654.2959 5069.805 2178.5198 3808.691 4221.0012 6165.7355 2834.9493 179453.6558 14163.6104 15911.5713 5755.5446 2517.6356 2517.6356 2906.5105 10739.279 6041.8077 5029.325 5420.6887 17095.1779 12370.4611 5248.8521 9652.276 2993.9923 13835.9192 7064.6195 8659.8654 4699.9771 5927.3972 4774.282 3232.9943 13375.5317 375754752 linb Organic Remediation Pesticides related compound NA Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 5610.3299 10079.0324 1908.1692 2338.3512 4360.4801 3507.7714 3478.889 84178.1988 3672.8998 8035.5687 8010.6752 4338.7382 4338.7382 3526.7016 6445.6172 4550.2363 7109.902 3802.8499 3728.0301 2698.6682 7184.535 2342.5992 52030.6475 4658.3171 5186.6758 2768.9537 8013.3071 4245.9951 358244691 terc Metal Homeostasis Tellurium Detoxification Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 9233.3599 9238.9856 13313.7351 5028.1041 6174.5187 10249.6587 29800.619 21186.0147 8174.9104 15048.1988 170716.5132 13044.6139 272919.1343 43353.1139 35457.8896 35457.8896 8401.0432 21927.0577 11147.4757 10390.2987 55934.1148 7936.0462 8710.7907 17891.8717 20083.9679 11630.2306 33764.4066 18631.6671 20418.9051 14223.4549 14535.5326 28898.46 8735.5407 29552.3062 154159572 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 300349.4574 14792.3417 256118.2844 127296.1147 133590.0187 183763.6297 194956.193 164259.8073 389591.7472 212235.7988 215888.3081 181136.5942 4061056.7615 485614.7727 398014.2063 727907.1391 205561.2827 205561.2827 129697.4428 189555.6785 93026.451 1551584.4103 278555.907 274016.8605 112932.7826 157535.0642 168884.1333 112753.1119 417698.3406 376344.7792 230741.9547 96030.7656 250111.5209 120983.9393 119862.7186 362538.2022 190574362 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 1033252.4622 92699.7713 264470.4041 255057.4574 2939821.707 199174.5851 349552.4638 378724.4508 327601.2743 560739.5456 553702.579 324994.2472 7865765.6655 939857.0881 763195.2243 602811.0204 496687.2961 496687.2961 445604.1462 506414.2201 612153.7519 505831.8849 565484.3105 1595157.9203 393776.5486 324323.3614 529177.9893 336392.1515 1271996.7042 702934.0896 461371.5114 369193.6104 214383.7199 394818.6084 271947.7161 615254.7893 41058919 chne Organic Remediation Other Hydrocarbons NA Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 104382.119 11200.2834 75079.8652 66436.4922 27050.2734 8946.8099 166315.834 154336.3487 66263.5692 323361.3747 80564.7283 85746.9352 1785241.2831 59765.7922 186810.9567 129902.3355 91079.4109 91079.4109 78226.5229 148754.3811 52983.2506 380681.2306 237279.6194 293710.6979 75647.4445 103917.142 201058.9707 106124.1611 452455.6359 73776.436 116585.3217 42126.306 157408.3048 116202.9986 128713.6009 113454.5267 3157512 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 6766.6842 10612.9239 7727.9972 6419.216 6220.6413 7970.3985 4787.0124 160315.2662 11262.0599 5365.8229 6903.6753 6903.6753 4150.4776 13043.6772 9020.0623 8541.2223 6159.3857 11225.1703 5897.068 5323.93 12266.3279 5882.4781 20743.236 9044.7596 12675.5586 7155.7968 5857.5552 9180.6956 5926.1882 15178.6332 387866541 terc Metal Homeostasis Tellurium Detoxification Edwardsiella tarda FL6-60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 21761.827 12861.5722 21801.6388 45519.7779 12353.3159 17001.2561 30109.3104 8885.5789 13150.7781 39646.2924 24103.4035 445156.9182 18272.5611 60248.9454 21234.0132 15037.0668 15037.0668 16419.9037 34324.2704 23610.878 16364.0798 25500.9974 61058.8821 11954.1789 28757.7607 32104.7049 30063.7082 44641.8763 36931.4957 36849.3113 11941.3702 14940.4111 16717.0067 11734.6794 16815.6716 255106359 nhh Organic Remediation Aromatics Nitoaromatics Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 166259.1178 21256.3644 15289.6703 17442.8359 19500.4859 18735.0323 35780.1883 18128.223 28548.5716 20991.9108 27305.5031 378154.4809 52102.9319 44136.9994 20895.4197 31182.4903 31182.4903 38030.9803 18255.9048 22049.3582 92767.8427 35499.5852 49180.4728 15393.8231 11463.5956 28663.9337 22407.5621 61515.7301 32450.2388 29057.0653 13571.7429 15506.4985 25193.7601 14893.534 36826.5813 237637173 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14257.9744 10695.3009 9906.7841 10282.247 5830.6794 7156.7607 9251.1729 13452.7802 13172.2138 8965.158 304162.8436 276488.6157 12520.8006 15537.8584 9451.7775 9451.7775 11520.3089 24811.5454 13421.6718 19223.3533 20051.6694 18586.322 9938.9642 25501.5472 17752.0195 4953.5613 44352.9371 9653.8918 21429.8827 6389.2065 13569.1071 12753.1486 9295.5543 27241.8653 254442602 ara Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 11856.9109 12801.9485 13500.5475 24384.397 6170.678 7685.1293 9753.7607 3278.6914 39868.723 15264.7718 10526.6187 130460.4046 11975.5671 42584.1092 13104.4277 19122.9259 19122.9259 7274.5799 23011.0857 10768.968 50193.7073 7462.0454 5902.3934 6840.4114 21451.9191 19256.3504 6435.7343 40340.0864 28870.1721 22067.3645 13269.9788 12204.8738 8560.4694 4711.2494 13752.7917 34104734 tehb Metal Homeostasis Tellurium Detoxification Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 5384.2264 14377.5457 5332.8669 5416.3285 4402.1164 11352.1481 3319.7979 96602.7163 5869.8009 3658.1255 3658.1255 3240.2997 9055.753 5029.6049 5472.2277 8880.5342 4188.8964 7349.5389 3198.151 9926.1504 7405.7197 7408.0179 4707.2341 3859.9207 4384.9075 4423.9155 7788.7579 151359036 xylanase Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7866.2423 8667.6796 11419.2405 6798.4549 4330.9553 7161.4903 17027.5307 97493.9679 25269.9198 8777.1446 7488.7408 7488.7408 6928.9292 15486.9384 4382.7682 38878.1417 8550.9227 10647.7483 27434.1639 4825.2695 7180.9667 4563.0032 21297.9291 24303.3562 6773.9188 6715.1459 66741.1792 8207.7118 5385.8942 10170.2682 304437157 nifh Nitrogen Nitrogen fixation NA Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 6759.1448 10032.5241 6741.4219 5094.4119 5187.4515 9713.0612 2512.3433 6636.9092 6505.9119 9290.9787 8585.4028 8585.4028 3870.2368 10319.1586 7724.7273 8370.4392 14652.9526 6931.2091 10719.2548 3981.7484 8022.4656 3110.3701 13513.1419 13179.0518 8974.0746 4008.2378 10101.9878 6695.78 3124.5752 5511.5363 228275840 nrfa Nitrogen Dissimilatory N reduction NA Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 4234.2576 4281.5482 2156.5317 3446.1953 5893.9 125208.4223 4494.2245 3605.9605 8182.553 5864.2202 4996.1266 4389.2406 8175.0064 2808.2607 2642.3521 5467.6849 2468.819 9942.0326 3981.2377 6135.6229 2121.276 4095.3194 5217.8874 2669.7691 7752.4 118591752 terc Metal Homeostasis Tellurium Detoxification Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 11071.3635 7131.7259 3385.023 3873.6691 3128.7771 8674.3366 112487.2341 3413.2318 5150.0449 4861.2915 4861.2915 8580.8029 5304.3246 4070.2304 5810.9593 3229.341 6548.257 3068.5044 7439.6862 6785.1352 7885.8814 5466.1404 6371.4892 3790.6376 2340.296 5559.0929 300864444 PRI Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 4189.6555 5142.3199 24392.199 6209.6208 2387.8693 3998.462 3582.4045 3450.2033 3450.2033 5044.0322 8128.1861 5177.2641 7086.0471 5217.5201 6860.6498 3612.0997 260905605 dmdA Sulfur DMSP degradation NA Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 5311.4198 61624.3921 18121.7613 2095.8914 5758.235 6093.2741 7155.4708 9880.3245 77726.3177 4973.0731 4034.2923 10337.0823 10337.0823 2735.2775 5796.3438 7015.1029 5229.4903 6873.6098 5268.2442 2151.4463 2770.8575 5390.2548 51184.969 13665.4635 8547.6249 4508.4184 4363.4951 6550.17 3751.8174 7315.4153 254464221 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 13337.30485 13657.49975 19902.2253 14720.49675 7574.047 80961.99955 9410.2704 20593.9052 11598.39345 12502.91035 18698.8853 247372.7406 14981.5433 14889.2947 12298.83605 7251.9733 7251.9733 10243.08785 26297.5162 13797.8014 24193.47605 22398.68465 19071.1797 7955.9249 11402.1301 17602.5698 7885.5008 32459.59835 11805.02005 18960.78135 8757.82105 12857.03995 14011.97795 9233.50235 29793.63465 289416916 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tuberculosis T46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 100009.9946 10890.9453 6957.4776 4460.8173 48257.2419 12845.7584 8468.4301 138810.9833 38737.5863 3593376.2343 16042.3417 68558.6599 77389.5335 12561.3677 12561.3677 2640.2414 13584.127 12883.917 15665.922 10683.29 24401.6269 5939.1798 25349.6605 11135.4019 9365.9685 25759.7325 20557.3675 10699.4509 4998.8556 45906.1702 7266.8185 6900.6355 31744.937 90903277 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 29750.4211 10530.5238 11314.8787 10133.4349 7334.7088 12696.8969 9717.6822 113882.7835 24618.6764 455676.6273 8473.193 284227.9091 42386.7368 15278.1361 15278.1361 10247.3631 103040.016 29522.1453 43755.499 29169.7135 368873.3122 6676.1808 16981.1468 28376.5196 18344.9909 36607.8333 34375.1156 21244.2422 9826.0001 26835.6457 13193.6702 5404.8215 26275.4686 334684073 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 6054.4138 7755.6548 3336.7956 4717.3885 3832.7712 4767.8252 8983.3769 54081.4662 8499.8961 27370.5579 5361.8571 1905.0345 1905.0345 3778.8077 11389.5597 6450.0576 21438.3603 10355.878 6868.6725 2881.4407 7733.981 8170.4645 4712.8784 12111.6031 7208.0888 9959.2286 13628.2566 3706.0031 13398.0259 6428.041 12846.5724 300313232 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 5619.4158 39118.1768 6667.9323 7881.8114 2916.8937 3668.1469 22079.5801 8268.2406 10163.8709 6143.072 102131.1185 6702.0596 18070.0681 32051.0399 5764.099 5764.099 8213.7547 6791.7919 3557.388 10158.8904 8727.8911 2572.6882 2268.3468 13038.5808 6197.156 10442.1983 11036.2072 8049.9285 5373.446 5659.2844 4454.9619 3408.3354 5546.8357 90417852 SoxC Sulfur Sulfur Oxidation NA Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 27836.0743 11366.9784 17249.4096 14997.0933 15729.0535 15338.744 11769.5771 21314.3163 30502.4916 28005.7262 455011.0225 31098.951 21676.1458 29901.0033 12983.5319 12983.5319 16317.1532 35032.1017 23097.5772 19811.6557 33716.061 65207.4857 10671.6685 13363.5854 23151.161 11063.4819 54020.2758 12294.7278 21310.2778 14775.2796 17046.529 22102.4522 11106.1349 22886.1086 50954857 gdh Nitrogen Ammonification NA Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 1068853.6341 2569165.8811 1410217.2101 1546505.0194 2923155.9952 1992840.8383 609515.476 713879.2161 866781.7625 642504.2112 758651.1857 384847.6635 16067779.5596 848145 801369.6772 1754226.6669 649448.0154 649448.0154 444875.1109 694028.6856 504306.7301 1359385.5901 1187591.9427 2593272.2605 427306.4402 379017.8819 1004049.757 290294.3895 337082.5143 739299.9682 741325.3628 385655.7563 342529.7316 359899.5755 363769.4905 1798092.5518 18034320 dsrB Sulfur sulfite reduction NA Syntrophobacter fumaroxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 8364.1644 5542.2804 6070.8841 3621.9423 5173.9776 4045.7013 4290.0948 7538.6994 2472.5024 196392.8554 5393.7758 5488.0144 4156.4783 4156.4783 6609.5874 10925.3293 4419.0949 5644.3747 6113.6235 4551.0864 4655.699 3443.3247 10064.462 6006.288 13336.771 25990.8783 2482.592 4364.324 4451.2722 3014.4841 10390.5177 209486139 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4616.2782 2427.0032 4412.7249 7559.9926 3983.0256 3641.3093 2183.0596 2381.7743 5224.6424 2750.1161 2149.6709 338812463 ppx Phosphorus Polyphosphate degradation NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 6651.0212 4938.9723 3716.7667 3640.9814 6016.2503 4545.2356 3824.8371 124414.4349 4900.8429 5006.3902 2697.422 2697.422 9337.2477 7410.0059 5377.9382 54866.8115 8460.1142 2844.3318 3039.0811 6033.6934 2182.2844 10306.0296 10109.6459 6592.1854 2521.8232 4906.4521 5236.2827 2385.7783 7516.7691 209401906 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4943.1191 5668.4749 8388.7084 4689.9055 3604.1072 2359.57 149594.0139 6532.3931 5319.8241 41877.9405 41877.9405 9718.2152 24835.0518 9540.4831 3667.5162 3534.1272 2843.0211 7827.0229 6298.8246 6711.5733 1978.0981 7356.7133 10206.4055 3456.2474 337733913 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 293410.3274 26876.0655 125709.3728 186196.7197 74235.5256 37452.8796 159582.3707 177581.0103 318218.6935 151993.7579 214781.3313 137352.2751 3903854.601 271430.6613 256142.9472 401176.4326 176979.9286 176979.9286 115314.697 208024.221 140165.7648 231646.859 212663.5403 546689.6562 126467.767 166190.7889 159120.9911 177166.4258 377769.5214 249852.3958 228832.6227 94921.52 153481.2561 180127.2522 104222.9717 282193.8073 321161983 RgaE Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 5087.369 5025.6477 5786.2887 6974.1083 2934.3416 6028.8112 6057.1905 4260.2664 115721.5163 8314.0295 5436.4233 2638.2243 2638.2243 4339.4611 11673.7085 8386.3648 12428.3632 7999.7547 9438.0206 3532.3378 4784.4812 10812.57 3479.3838 16113.7387 7431.7331 8089.3079 3282.9736 5667.6034 6198.3893 5088.4682 11241.5552 387889647 gdh Nitrogen Ammonification NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 13763.7222 3778.7741 7870.4918 6042.1746 5244.6839 8053.3421 9020.0086 10193.5973 2688.0558 98447.3832 5320.1735 4529.7433 8064.7471 5363.3719 5363.3719 4214.5512 7496.314 3302.4514 8852.8626 24609.9217 3425.4816 4888.5572 8584.3795 4173.892 15643.7803 8026.4123 8991.4104 2656.041 4568.5958 7793.8691 2727.3656 12362.5389 160886952 rgl Carbon Cycling Carbon degradation Pectin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 14120.5794 5012.9502 3479.2183 3864.4217 3553.8012 6782.6748 11185.5082 6191.6618 113729.9415 5847.0276 6234.1102 3652.0002 2697.3299 2697.3299 5555.1511 11594.8716 9281.3575 8196.0734 12249.771 10379.7224 4001.3517 5350.624 9587.3616 5868.341 17134.685 4350.1374 9940.2319 4328.3467 8774.0101 5597.627 6214.1471 9987.7876 118424484 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9445.2052 361749.4885 12013.4728 30255.6653 6688.3736 5141.983 12332.1456 8681.1314 13637.7527 137642.1162 27848.5045 8192.9206 12039.1087 24901.608 24901.608 4718.4655 12565.9096 11593.9843 10450.0264 9351.1415 142931.2698 4210.2262 6832.0942 16983.7708 5759.5105 19157.8584 15949.7384 14151.741 7512.8622 8960.1421 8418.4726 13143.6715 10709.3411 284034725 phytase Phosphorus Phytic acid hydrolysis NA Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 83435.6198 152121.5816 26701.7148 61966.1971 19867.3173 45987.3121 77658.2717 47956.257 47798.2152 156954.0777 50942.1933 1914511.2992 53236.0122 86078.7982 82610.1064 164749.2221 164749.2221 37855.8198 105993.8458 47401.6326 105856.4619 67874.9573 110876.598 39924.8998 46281.1929 80369.8965 44304.0484 171650.818 75461.9517 74119.6329 40056.7369 43149.1685 73870.8598 31655.2845 64029.9431 359765357 cutinase Carbon Cycling Carbon degradation Cutin Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 45051.153 4765.198 27574.0985 91737.2069 11230.261 3026.6307 58609.0909 5186.1066 4734.6324 5476.1915 327879.0406 6687.6064 8171.7759 17640.8734 10366.0558 10366.0558 5455.6917 93001.2863 6081.6096 7548.6429 4473.1923 2805.8678 6932.9327 16319.4453 4252.3273 15130.451 11859.9715 24031.5344 5199.9516 7201.0353 6251.4008 4054.2699 4360.7543 329901890 amyA Carbon Cycling Carbon degradation Starch Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 27567.5614 5624.4636 12204.9346 20763.2873 8002.937 101413.8362 16868.1449 6107.2285 25445.7103 25355.2396 25973.7755 666025.1117 17973.1537 23659.0166 27277.1206 13235.5071 13235.5071 10282.4667 60680.4388 17837.798 99572.4362 26988.8262 72286.0536 9863.7875 20285.2874 21710.4378 15533.2895 74705.4067 61378.8933 23144.9458 25077.575 22200.8519 25814.0044 16500.436 38740.9563 257454642 ppk Phosphorus Polyphosphate synthesis NA Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7317.3569 12007.9602 6691.6807 6546.6264 9327.3453 8195.744 7418.4217 6031.7384 62085.643 8636.3043 4901.417 179098.3916 6075.9282 24720.1367 9949.6951 4761.0133 4761.0133 5461.9848 22386.519 9467.8843 7013.5538 7645.3617 10250.3791 5874.8262 6878.2955 10299.9842 3923.3933 20514.9716 8748.1179 11468.3234 2977.3289 10353.46 8777.0147 3188.2348 9391.7838 332377342 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 45526.0164 41733.7406 27342.672 27158.6733 50221.5853 12807.6774 16503.3304 12339.2663 22402.86 28335.8437 25737.244 613144.6735 24823.278 26001.3547 24610.5948 15532.1131 15532.1131 22008.1434 48052.3464 32509.3827 42810.7158 57722.8694 47356.9269 14026.8021 11762.7013 34660.6083 11661.3276 78829.6915 22830.8313 37151.9747 31502.5369 22996.1392 25134.2121 19666.611 36836.6333 126438843 nosz Nitrogen Denitrification NA Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 5644.7263 3232.3986 2517.6574 2103.0083 3601.9096 2038.0717 2038.0717 4177.8966 6830.589 5388.2335 9453.4989 4914.3671 14186.172 5062.2488 2041.6935 12618.1157 3460.6627 4173.903 7971.0682 18106.3071 2645.8042 119897685 TIM Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 17093.1173 3103.0106 10713.9712 4385.5024 8203.5855 4714.4739 179765.1591 6552.349 3675.9981 4531.6681 8257.982 8257.982 4258.0453 12421.7083 7160.46 2222.8172 2380.6809 3765.161 21856.529 3659.5273 8718.7464 2448.4055 6213.5113 14561.4618 3638.4327 5410.3474 258520037 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 16142.5062 29388.6777 67506.2546 63688.7172 24434.7262 35633.2311 23596.5489 53936.4531 63596.139 24397.8523 15095.6874 674437.3154 19331.9608 25553.3236 30836.0894 25504.427 25504.427 18426.9511 32783.4855 19358.3906 19206.2397 107219.4754 31044.3435 11224.2109 14886.6972 30633.9016 13470.9071 43958.626 32035.6392 28104.8271 21280.9947 17744.9356 26582.9194 10640.4038 25733.9331 320006976 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 14622.5407 17738.5539 10216.6074 41202.0262 18442.2079 21851.5634 18677.0694 18545.4663 28468.1565 35859.7701 26300.5223 1168364.2905 16273.016 15728.4666 25904.2348 15569.9633 15569.9633 14245.6575 21123.5466 17356.2847 13928.4795 13228.7017 13267.7139 5634.9119 14996.575 32125.3087 7783.2889 25653.5421 16095.4562 21233.162 10352.8968 13169.2133 18086.0935 11732.5246 46458.0592 218762792 hao Nitrogen Nitrification NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 6383.206 12503.4553 8212.4857 33982.1402 5005.8234 3177.0254 5120.2899 6019.5535 4088.6626 139368.6799 6122.6257 5768.0931 5987.4583 2485.6499 2485.6499 5332.8068 8887.4773 6774.1003 4918.787 21128.1093 11767.1874 4354.7498 4311.0407 9412.9769 5804.3687 17140.3593 7718.5982 9109.2746 4938.9903 7694.9118 5568.5091 5646.4482 7597.3857 199653468 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7894.0321 7439.0903 13461.8289 3555.4831 9684.7758 5533.6599 10457.9171 161570.3494 14026.5049 11886.9712 3980.038 7240.5664 7240.5664 8190.8169 15255.6646 8553.9683 5526.4207 11664.9693 18360.6904 2451.1115 4428.7324 15014.8144 8940.9882 22877.9165 4759.481 31563.5824 10657.764 4108.8557 7779.2001 4581.2825 11139.5902 169851080 Dyp Organic Remediation halogenated compounds NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 23705.8098 33019.8265 13213.442 16877.8815 6505.6894 18859.1584 22154.9882 10426.5832 17959.4362 56202.1574 15199.3649 226285.2509 17511.23 33647.8 13119.4126 12350.8053 12350.8053 13914.5201 28380.4265 17636.8719 24032.8665 72482.0081 23774.2271 9506.9914 16393.5177 20824.5906 15876.8136 46310.2814 29549.0834 33700.2483 12574.2572 25679.2736 18708.0581 15114.4345 27413.9193 255950840 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7333.0489 11123.7282 78662.8227 15588.3673 3013.247 7183.1401 2250.4449 6411.6712 7058.401 3611.4655 231483.4839 8201.2523 6571.3371 5487.0259 5933.4129 5933.4129 4771.9107 12484.4393 13865.6275 7751.0221 9214.4134 13606.6936 3781.179 4602.5657 12719.0063 6266.7311 12638.4272 11660.9694 105997.3541 5465.1741 8402.2424 5345.2049 3011.6105 9635.4807 291582012 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 22296.4346 8467.984 15220.6343 28356.946 9158.832 43967.5641 7538.0043 10586.6277 11524.1404 6483.902 573851.2982 16315.6693 28085.8689 13634.451 13205.0282 13205.0282 9377.1426 20523.9007 12348.32 66162.7769 22909.3965 24641.1558 6167.1308 5522.1953 14963.4619 7318.8255 30557.4417 16796.3117 19287.3698 8340.4103 10661.0671 9961.7255 8359.3761 20360.6162 84383340 terc Metal Homeostasis Tellurium Detoxification Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 21081.4026 10576.0446 19522.0803 28543.2861 58558.2771 32349.7271 15252.334 17846.7981 17572.1518 20443.3315 26663.2451 423313.3119 16129.5103 46513.0613 24316.8302 54931.2146 54931.2146 10373.0027 45788.4996 22240.4244 16903.1996 24984.5972 30096.0667 55732.8115 9252.6065 30015.1219 22689.7445 43664.2137 29541.1083 56450.045 11833.8505 14854.9042 21806.108 20933.8258 14711.7986 312113154 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 10480.0891 13017.448 6825.6284 6985.2957 4312.3781 2967.8959 6319.0346 23225.0138 6134.4754 124636.3316 14392.2991 10508.48 10013.6494 3471.9292 3471.9292 5173.7186 11910.1079 17449.4688 7978.467 9205.2973 7378.4673 3541.2 7849.4239 11889.133 4433.366 10723.9559 12781.5232 13352.3475 5230.1863 4504.4185 7071.58 4828.2636 10208.3595 330837012 cda Carbon Cycling Carbon degradation Starch Spirochaeta coccoides DSM 17374 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 15310.0612 8886.104 20605.2119 38721.2427 6199.3938 17867.2111 40201.6754 9080.3307 18476.9139 19026.005 10576.1713 490460.125 23913.92 18062.2193 12483.9748 9610.7065 9610.7065 14938.5013 29041.971 48346.9331 267554.4434 24897.6299 29380.9279 15319.1697 17845.3632 28894.4342 42329.5485 48259.952 30417.7605 18053.5727 23079.2047 19308.2161 20172.9094 10593.0835 31708.9093 72161237 amyA Carbon Cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 33759.7294 561316.0254 22190.3499 14618.9066 68457.7978 9560.2301 27922.1613 4669.985 13500.3984 21495.9816 16841.6396 368331.4511 27918.4728 36533.0355 46618.4354 14564.7701 14564.7701 17200.2235 27028.1393 33047.0498 46641.248 12642.3054 40238.2169 28273.7438 35055.2764 49967.9745 19121.5907 94076.3358 32530.7737 36171.3045 24389.003 13673.8179 22130.6302 14257.1871 85741.3719 378402132 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 60509.9374 12129.8468 2558.906 4382.3221 5198.7888 9824.4363 74806.5907 7759.9062 5077.4922 7598.7455 5698.8067 17935.469 17935.469 4541.8084 28280.6378 7466.8146 13363.532 10010.8463 6544.5985 4978.2291 8325.4158 5470.7101 10478.8056 27667.6543 6843.3166 8765.3875 2748.5221 7415.0766 12581.0989 5951.2238 4592.1997 190688462 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 51320.2986 57119.9008 70635.1103 27803.6702 57647.8095 11073.1694 15423.7384 39733.718 13453.6057 21943.7075 37306.8477 33566.2324 456825.7221 35482.6615 31341.3917 43089.393 56374.8979 56374.8979 75160.621 48203.1452 32081.5045 38090.3603 56061.5543 33184.9335 16986.1101 50006.2659 34585.2566 140667.0462 73882.2268 76826.6069 47407.3183 13411.4845 25166.376 34354.5056 26866.5771 119271.4546 380692908 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 8890.5464 7299.7044 7378.3207 9293.5677 7172.0899 10199.7583 4691.1606 235595.4998 7701.066 9906.8507 5522.6237 4210.8221 4210.8221 5580.5809 12312.2123 12845.8483 9002.6008 9605.0481 6514.5557 15758.0473 4810.0898 10482.4467 5814.6829 18360.5841 8968.8275 9290.8499 5624.6262 6453.9552 6861.7003 5017.1048 8744.8331 157085507 cysJ Sulfur Reduction NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 42477.8491 50144.1949 26355.3498 31221.2758 18132.9563 41001.9913 20079.8633 29948.1737 21701.5539 23833.5815 46994.1136 625171.9235 39006.4449 29770.4567 87733.6828 37711.1188 37711.1188 14434.0895 44311.6747 29590.0652 38816.671 62995.0781 64156.9303 19332.8548 17936.8852 25185.2593 58125.2423 117169.5832 24729.8182 37801.3624 421073.2022 27701.1394 29332.2405 19966.6059 104544.1956 161163802 chnb Organic Remediation Other Hydrocarbons NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 581181.3986 479670.2352 362695.0281 1676341.5209 496204.6309 373233.1731 470796.5549 736882.0715 364019.8097 347359.8296 442091.3255 363390.7261 8898136.6444 320676.7863 503974.4709 945061.6816 476607.4643 476607.4643 442550.106 608233.6647 213363.1916 443869.2126 655156.1091 1754198.1091 360850.5306 310129.5016 407783.8969 289387.3389 816004.8189 448510.0614 580464.1957 256109.8678 340271.5687 353280.3496 290794.7422 632733.2855 239613770 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces dermatitidis ER-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9787.5073 10483.2133 8907.5228 2923.7801 165819.8948 8898.3789 3611.7093 3240.3159 3240.3159 7188.8175 5574.0852 38312.1253 3947.9685 2828.4407 6123.6838 8222.3674 3970.1085 3544.4174 3219.1206 146191986 alkk Organic Remediation Others NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8276.9051 7532.9261 15435.3753 15047.025 8745.5739 4457.9937 2672.502 6938.6289 10110.1294 6091.6328 428001.6965 6472.3828 7561.7142 15728.2418 4359.8684 4359.8684 5082.7848 10063.4328 9556.6677 6868.668 9529.5934 7731.8614 3600.955 3794.2638 11602.1747 4057.4735 17585.9494 37671.7586 23575.6677 3959.2462 6500.4721 7594.3156 4263.8807 9039.7021 209504514 ara Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 21919.8119 103361.3315 13252.1868 11424.9801 10279.5051 9121.3753 7147.3404 8315.298 12366.2672 41986.4077 257183.698 9252.5883 31082.2754 106988.097 8475.1314 8475.1314 9461.0973 24793.5236 18494.9025 11777.4066 11477.9225 7238.7984 6445.9412 18727.798 7299.5242 14701.546 20991.6116 16991.3887 10990.9715 80807.4062 17030.5265 13403.3546 39448.0369 10748.4795 330836242 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Spirochaeta coccoides DSM 17374 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 6093.5536 7137.0018 4680.8787 2608.5069 3184.5728 4166.1228 9060.4375 73150.4056 5514.5938 6894.8978 4282.0027 2871.7894 2871.7894 2644.5837 8950.5206 4425.1891 4398.6985 2429.0817 2400.3196 5132.1377 2861.386 8446.2303 4617.9243 6064.1155 4121.6091 5747.7634 4861.8129 2099.1805 4549.5986 70986760 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5558.8956 119877.3745 6426.5319 4922.8471 2867.027 2333.2973 5149.4305 4466.1077 107382.8457 5776.858 8361.4883 4073.69 3894.9283 3894.9283 5227.1476 8243.1664 5578.426 8192.2191 8552.2483 6290.1059 2727.3134 2795.9571 5985.2426 2392.3382 12097.6175 7182.322 10159.0403 2327.7589 3220.3062 5152.9545 4012.1535 9693.5626 77378519 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7413.5033 7131.273 3161.4099 4822.616 6422.7533 72451.5042 4800.7317 72314.4412 2107.7084 2107.7084 3730.795 6872.8415 8721.163 6398.8784 3991.203 874560.6916 4313.5662 2411.1953 4539.6492 2649.8652 3622.7746 6549.0756 2903.2216 3145.8967 3050.31 2724.6908 33716.6111 294937459 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 5843.4056 42498.5879 26349.3656 4743.1963 2407.4363 4966.5044 11132.9495 3367.4496 92343.40575 4440.2373 10343.9232 12757.553 3845.4143 3845.4143 9945.0985 9022.3807 6285.7275 11139.2547 3297.184 4853.019 6660.22895 4840.50985 17724.7574 6168.4583 7273.41745 2980.13525 5363.8107 11234.3883 13892.0854 6383.409 161164464 ppx Phosphorus Polyphosphate degradation NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 157233.1495 52758.0096 112820.1669 52312.8258 46787.4453 9807.5754 65030.1197 234943.0243 79386.4283 47648.5067 90269.9546 113229.7634 1316998.0122 78844.4649 75684.9588 118777.5583 113718.3022 113718.3022 95058.5833 217453.5265 237735.6064 68792.1949 87942.3208 90642.4543 56017.2247 64069.7807 193440.0784 43700.6067 117650.8699 137582.2987 142975.5768 55126.0341 82347.2944 82815.0858 58999.0762 119243.1268 87080642 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7010.9541 5989.4126 41051.1073 7423.9798 6798.644 8392.8405 2093.5187 121622.1142 9034.7679 15000.9063 220024.1785 14985.9859 7644.3072 6584.7881 12654.508 12654.508 6571.7131 186867.5924 8648.7172 10241.3533 11201.5674 10212.7114 5363.9553 9180.4821 12571.1765 5955.2607 15618.2767 5369.7858 12043.1043 4613.1875 8312.0656 9178.2986 5374.5821 9880.2477 302545173 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 28836.2556 19308.1297 5573.5893 8125.7186 21429.3548 12580.0519 6358.483 12566.955 18712.9063 11186.9085 233025.9208 26704.9453 18779.1439 78128.2507 38516.4601 38516.4601 9315.4079 27817.6774 17924.986 19551.1963 105907.169 17887.5244 66948.8478 17516.1203 68165.2997 104158.6463 44258.1352 109144.7342 26367.5719 11850.3269 28902.404 27970.7566 9988.2729 26562.8146 260775308 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 6726.7599 6320.7838 3991.3995 7661.281 5628.9194 5402.8431 2155.6949 4258.309 7963.652 3497.6469 124855.2808 10238.5544 6188.4377 7194.2891 3469.3226 3469.3226 3753.7761 10037.8072 7326.8029 6724.7948 6831.9523 5430.7513 3337.4353 4155.3445 10146.3352 3274.7873 3645.9613 3456.9463 9642.8304 7122.8748 4738.3186 4777.1947 3515.3421 10137.2333 84686973 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 6861.6425 107168.6724 1483663.7033 9484.8778 18272.6426 8974.7356 15892.2538 6336.8629 5561.4648 5561.4648 56249.475 43252.0886 9054.0712 469896.8432 21265.6995 4762.9538 8280.8014 2953.6066 10340.0227 2523.1929 5251.8564 76056947 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11627.3654 21022.1115 10811.1339 115207.3376 7762.0416 7422.875 6888.6134 94894.203 21115.7183 171315.2626 8845.8915 9043.8062 6697.2292 6260.6791 6260.6791 7315.4532 17491.5955 11037.8701 11298.9787 19676.8539 12460.3337 5236.8457 6109.2396 17419.1871 6204.8008 26717.7258 12447.9853 16444.356 7749.6112 7720.1771 6723.5261 5416.3764 14032.6576 294475571 phn Organic Remediation Herbicides related compound NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 29168.3312 13012.4163 21703.4476 21797.5739 5694.8574 15081.643 18279.8702 14675.4966 17066.0966 41117.3228 25845.8382 365495.9493 103712.3166 16613.4258 78629.4353 19087.4213 19087.4213 22049.3932 50586.1356 31105.1538 25365.0517 54280.2198 27430.1973 23577.4894 25106.2649 22715.8477 63189.2808 64623.7151 44639.1749 33301.9148 8731.3876 40865.3828 25273.4998 23893.9377 26337.8735 113955530 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10553.3418 13209.0747 341321.3723 5140.5309 3666.6303 6051.3952 4203.8275 83437.0288 7132.234 5395.5439 5191.8749 5592.6582 42908.3839 6090.3305 59133.174 2463.7416 4511.5727 19743.9014 22169.2344 13484.809 11140.3564 4759.8546 11450.6404 4746.305 5405.1565 4902.9694 206687788 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 5457.9983 6646.5577 5841.8904 6417.8785 73267.8755 5811.3459 6466.8916 3070.2199 3070.2199 7234.8884 4857.524 6223.0252 5916.8703 8441.026 2360.3081 3740.831 4163.6322 2342.2574 13579.1732 295411516 alkk Organic Remediation Others NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 7318.7642 15377.1983 20895.1483 6722.0945 6247.0943 6308.6201 4550.722 7125.4557 7646.5183 5088.7802 321596.3426 13462.6005 9138.1916 15087.5568 9135.174 9135.174 6700.7958 13484.1374 12104.7258 8613.5978 9178.5524 13273.2289 5311.0018 6871.2625 18807.5781 5638.2174 21961.3189 10416.4098 15989.6513 7557.0646 7570.286 6991.9648 5454.561 10827.4174 119898739 hbh Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6644.9821 10473.3698 3339.9274 9254.4222 4676.6972 6732.10775 11077.1037 1256542.886 4225.3574 4977.4201 3550.9512 3550.9512 5773.5433 7881.7286 9159.6998 16269.7679 7258.1143 9374.438 5379.6045 12609.0395 5298.5159 11600.4026 18556.629 3548.3856 5046.0287 148272660 endoglucanase Carbon Cycling Carbon degradation Cellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 35613.4412 17135.4201 6163.9085 14551.4069 7943.2565 5472.1356 7543.4004 56766.7633 15481.442 231776.3168 20376.6284 21667.8506 17222.4098 11745.5069 11745.5069 15285.157 23468.7469 61719.2715 11139.5867 23243.0863 9936.9684 14067.2857 10099.6591 26485.4887 6483.2187 39177.7242 11809.598 16948.1456 8268.8585 19654.2184 18327.9779 4688.1456 35503.666 385150499 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. 5B6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5561.1447 22850.682 7725.4802 14748.9294 8620.8452 3462.5021 3131.8577 4841.1045 25286.0086 5008.7826 13636.0159 171971.4431 5271.7073 22376.1454 414672.432 14183.698 14183.698 9667.9037 12940.4812 9577.4447 7457.5181 4990.3263 9106.8426 11625.2416 17262.3544 11527.7665 12250.4122 14306.6126 17810.4295 13711.4454 13241.7231 9307.1011 6482.4417 6229.2384 19061.5733 163761230 ben_bcla virulence NA NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4997.793 9957.2537 3694.8329 3447.8643 2980.1324 6819.6493 3575.7117 80224.2227 4347.4044 3802.5144 2367.8257 2367.8257 3329.9464 8036.5622 6131.5048 5220.9342 8217.455 7032.4098 2563.8776 11467.5891 6907.5761 3016.1414 3969.7887 3074.7524 4533.2264 259377418 dsrB Sulfur sulfite reduction NA Desulfoglaeba alkanexedens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulfoglaeba; 227268.0991 75368.1031 30348.2544 43993.2719 9293.5653 109821.7807 106620.9615 14925.8538 21963.4676 47961.1191 42773.4015 749701.893 32834.0081 42599.4521 164813.1676 92861.3042 92861.3042 75554.1449 85662.7599 32988.8574 35087.0328 246291.7979 37502.2226 31985.5498 31609.4588 47773.188 40474.0609 105400.9085 47405.953 53901.5222 160917.4014 41976.7045 45207.7684 22141.0354 57137.0838 312270114 endoglucanase Carbon Cycling Carbon degradation Cellulose Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 26262.4992 16109.8042 13129.1212 27385.0924 1150315.7518 395488.1721 17702.1469 24291.7225 5494.1575 30269.8226 19507.0287 16489.7806 492718.4183 36248.5548 27537.0434 41144.0404 28326.3378 28326.3378 15087.7483 33084.6242 26725.8639 8937.8694 17421.3165 16887.0909 10824.388 18470.2844 143243.8589 6443.1887 51674.2186 67522.0584 62856.8165 15930.4806 50804.4983 27535.4247 11461.9506 16363.8228 171320783 chnb Organic Remediation Other Hydrocarbons NA Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 15807.0273 495634.082 17248.8312 10561.3857 8431.9214 39245.6961 33228.7487 9492.6414 25889.5504 17636.6958 100172.2768 9597.7838 18352.2239 16096.0744 16213.6485 16213.6485 5984.0962 51813.9272 9443.5594 15775.4904 23628.7253 21789.6997 29621.1189 14501.2203 18740.3811 41873.6786 38070.5495 20546.0131 29876.9331 15381.4212 24652.1638 15182.9636 22618.1117 39570.7017 256259389 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium occitanis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 3763.5073 14739.2178 2138.7469 3220.6582 3583.1401 32856.4815 58141.185 4541.2032 3396.9786 4095.4666 10295.3687 3815.7866 5437.7595 7689.3417 5175.0514 2624.5523 3777.257 5501.3302 110680036 dehh Organic Remediation Chlorinated solvents NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 10945.6994 32943.9505 8324.5468 8059.9665 6022.7429 4537.8673 5771.1027 7252.1715 287667.1249 9060.5246 8962.5575 17816.2415 9374.6769 9374.6769 4411.4831 21167.5879 14341.2802 6425.8797 60829.6441 5834.5393 5575.4599 17166.8326 3517.9775 22730.1845 12294.6116 14871.0812 3636.4101 5362.3626 8270.2731 2343.6352 15605.9327 33391483 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 41574.7939 117891.4704 54012.4737 41502.8533 37931.075 9521.0992 48522.7766 31889.4691 48225.0974 36343.1056 54049.2355 37706.0892 955433.886 66472.9544 44301.9608 62103.6401 77143.2146 77143.2146 34222.9648 72221.9348 37650.3326 89324.5014 79122.6464 91611.404 31498.0946 37658.0729 56484.3022 28776.1414 31026.022 37570.8818 51261.9892 23149.9398 38060.8802 38832.799 27257.0792 82377.6258 322420895 terc Metal Homeostasis Tellurium Detoxification Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 32126.1458 24764.419 15408.7188 9098.7096 34215.88 24771.2813 8499.421 20831.1172 25648.9986 32815.4026 500991.2096 30249.3406 22079.9225 18473.6461 39411.7388 39411.7388 129383.0668 39823.0136 19537.3908 126102.1176 53462.1538 36981.5581 18283.4256 13428.5635 30335.7958 12898.4133 37768.0019 20076.2843 24509.8853 12168.3391 17067.2963 17544.2584 20816.4279 31896.4804 302406735 rgh Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 8144.2294 21406.8132 21046.4739 26851.1028 5531.7029 5246.8916 5318.0742 11904.796 5062.3551 104428.8046 4347.4649 4854.6779 6190.5773 3408.1272 3408.1272 4246.4531 10991.4733 9669.6281 9713.2021 9762.2036 7915.4761 12711.225 4735.6268 9395.1749 4688.0407 17616.3392 6809.68095 7171.1063 3457.4883 8906.1018 7610.0236 5055.793 8441.969 307745716 gdh Nitrogen Ammonification NA Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 28563.3518 34164.6291 911741.8882 54003.1017 11907.7867 24663.2909 85408.7044 18328.6833 35094.0682 230578.9515 22260.376 856004.4666 44639.1301 26175.0426 19694.5612 36986.9056 36986.9056 35138.5756 34825.8748 23704.2531 46185.4947 57924.1779 30593.9531 13977.7824 16861.7448 33194.6507 22232.7553 82607.7983 40202.993 39924.3217 24241.1736 16664.908 132191.0109 23623.7804 76051.3007 12539415 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 39534.6449 8011.822 29489.4771 17384.067 21693.5717 18415.935 11682.652 15737.21 32294.1569 22897.8195 476072.2205 73681.2817 22224.0106 15576.8056 11418.2437 11418.2437 22943.2907 88774.0272 47230.5809 55348.9315 152279.8799 238360.9477 18125.9267 26472.2276 18934.877 164583.4108 87588.7139 25923.5583 29656.5137 15611.4652 14693.9766 24295.4352 69790.0055 186747.0993 4038456 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus pumilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6527.2804 8090.4262 6143.8252 15724.0906 2662.3825 3879.8757 6153.0955 7634.9075 5336.7327 8339.3004 5720.073 4932.8961 2821.9242 2821.9242 3810.2167 32487.9582 6544.0119 7430.8679 8419.9807 5087.0231 8005.8745 4645.087 21262.7492 5599.8573 9483.1979 3738.6118 5204.8432 8908.9041 4565.5371 5068.5503 118762756 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 143543.3221 113738.5392 63130.4926 7090.8988 5149.2182 4868.4212 4366.5259 8135.382 9838.9398 9237.8599 173380.494 14775.648 8560.1508 12819.2132 7230.6902 7230.6902 9997.1243 14852.8093 8121.9298 4584.2518 16560.0971 5910.4302 7104.1945 6709.1698 19148.5529 3973.6674 15288.0608 8498.0517 14736.9504 3169.6749 6581.5303 7210.2642 4422.1927 7789.089 329119978 gdh Nitrogen Ammonification NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 25024.4218 5554.8415 41580.3287 8092.3072 9327.2703 25539.165 19926.6816 12825.5507 18275.6069 21420.8232 146809.0372 15835.7299 15826.009 21128.8996 25693.1337 25693.1337 8765.2428 30485.2601 22003.9728 38796.2509 53002.9977 21023.0044 17740.1334 18049.4487 13553.4736 18988.8787 50457.6711 6650.9757 20654.0629 7566.3 23263.7087 23878.0639 18925.42 12994.1672 394311910 B_lactamase_A Virulence Antibiotic resistance Degradation Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 6350.4665 13113.6323 4438.3965 2601.3806 3441.5961 4533.5568 6112.2908 8028.0982 3040.4257 148293.9754 5866.7065 12784.601 4771.4118 3668.6908 3668.6908 3671.4422 8362.3783 4808.8517 9817.9443 8890.0658 7941.9909 4134.8785 2947.1834 6688.2958 3807.7005 17700.1154 7759.9142 5187.2121 3797.0279 6060.9039 2861.243 9168.6872 219542426 mcr Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6915.6545 6687.5681 6618.6263 4659.4633 3738.4331 2828.7026 6311.5414 8702.7279 2721.5673 155447.8469 7768.5023 5939.5441 2847.4889 2847.4889 4902.2247 11908.9079 7333.9754 9531.8459 6773.7241 10425.1865 3602.5576 5114.2854 9918.9841 3276.5427 17035.3006 9100.6541 4096.3002 4703.6694 5054.2847 2875.499 9411.7591 193225362 alkk Organic Remediation Others NA Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 13488.6998 5992.8446 8851.7588 18455.3009 9412.061 5284.2471 8731.1696 32909.3538 10186.7707 15066.7507 16554.3004 237536.6343 31585.0291 12345.3414 10643.511 92714.563 92714.563 7547.9281 55128.7997 13605.3612 16148.9534 12454.374 14513.1526 8879.2591 64421.8578 14527.3778 10323.8381 31852.8484 15922.5961 25965.4232 8241.1528 52536.188 10310.6281 7722.0735 11491.718 38049254 mer Metal Homeostasis Mercury Detoxification Enterococcus faecium superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus; 47048.6556 44550.7982 26606.6898 58149.7016 80727.5883 18854.3439 23754.6314 43637.5822 20554.4264 28548.7801 45387.0339 45457.7922 1331071.7469 52985.4516 46607.7808 65665.408 24940.5141 24940.5141 32772.2651 53297.2431 33451.3744 60280.6286 39241.4212 39531.586 21053.128 23171.0215 45919.1151 33884.6584 60458.4216 45255.5821 51362.6571 58973.5883 29942.4605 42558.9612 16856.1306 45902.0531 325532765 badh Organic Remediation Aromatics Other aromatics Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8697.8268 18120.4426 7194.8143 8040.5483 7191.1547 4591.613 21586.2917 3921.5522 385890.1347 6677.963 7219.1848 4942.7369 15434.891 7422.2366 6735.6612 10704.5074 5142.8023 9151.4737 5975.7278 7262.7579 4384.5411 27886.7736 9037.4093 9873.8269 6089.2819 13271.4751 7091.8478 6273.8441 13122.6027 109452546 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 31983.807 124705.8558 19027.2267 60817.9227 8039.6811 32530.7681 21396.496 13407.5363 25579.3443 34535.2808 19877.0741 556755.1096 28076.8234 26072.1026 41238.1239 74203.6354 74203.6354 22284.9541 86169.5854 31734.5433 21219.1478 57179.2179 43351.3836 52052.8805 127209.8856 61516.5551 12332.4775 609229.4654 37415.9537 50017.8572 34511.9888 24445.9369 40676.5306 28340.471 51550.3677 302899692 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 206574.1845 23375.6963 191539.7292 63422.1061 68373.8842 144337.584 562052.1034 177969.1305 350895.1966 143780.3597 286205.4257 189079.4659 3429863.0873 220260.2487 739572.6483 516215.2277 296016.6574 296016.6574 96801.9059 214803.5453 108618.4241 469699.1016 251036.7206 333245.4775 160805.3301 210126.8906 135769.0685 149548.5709 501000.9091 772921.381 260393.4947 130517.0869 145391.3588 162532.0391 100854.2566 496544.4991 220062009 one_ring_23diox Organic Remediation Aromatics Other aromatics Arthrobacter sp. JDC-12 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7874.6809 15505.2242 568278.8863 7064.988 5946.6843 6423.14 6847.3701 49604.2433 196705.2595 19527.0382 7470.9341 10855.8494 9525.7813 9525.7813 3042.0349 17541.5232 8265.4131 4922.7165 13254.9275 5926.6868 2221.7833 9121.7244 15279.9855 2458.4964 18504.3235 7505.7906 9696.0835 2971.6418 4252.3388 7944.8488 2648.4098 5022.1054 223029681 actin_Stramenopiles Other Phylogenetic NA Nerada mexicana superkingdom:Eukaryota;order:Bicosoecida;genus:Nerada; 6026.5241 5019.9343 2162.0817 2561.5355 3512.5748 56515.063 3420.751 6647.3436 4118.1975 3908.5973 5299.7687 2437.8624 5377.77 5315.9469 2091.7487 3775.4709 2544.9075 5046.5326 219860987 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 100074.0737 17048.0032 12715.4968 14282.263 47857.1202 9087.6484 25586.84 44057.4788 23380.404 22041.6113 68170.3307 21122.1918 353035.2078 16908.8479 63371.0619 30578.746 28976.0253 28976.0253 22738.9255 94237.2664 24801.99 63572.0055 124495.2712 60350.1354 64254.7162 34692.9925 24362.7552 29233.5336 113582.7762 61168.9999 54953.4667 22526.791 37847.1986 61509.5109 22274.3547 22452.1598 126726914 ppx Phosphorus Polyphosphate degradation NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 10841.993 14741.9345 12984.2295 5430.6911 8743.6535 6574.6366 21037.6501 6906.7518 11505.42 12896.0683 409172.0541 9664.3256 14816.4401 17838.4623 49375.4664 49375.4664 5014.9997 21418.9515 12156.5149 18955.7357 28546.0678 34855.7802 17723.7818 18844.9767 16858.3095 8398.5229 54576.3178 20862.8502 21102.1037 18812.79 10992.8166 17751.764 11699.5871 5331.3367 398355246 exaa(moxf) Organic Remediation Chlorinated solvents NA Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 52150.7631 129174.8803 680034.1053 8342.3642 10522.0371 32136.7057 33415.2285 10064.2638 14116.1761 46179.5688 79935.2499 1310937.4845 26447.502 54210.4003 33310.8727 28600.1365 28600.1365 33284.4145 62467.4547 27122.0022 41982.0804 30229.2798 71816.4498 18121.899 17736.1158 40867.2954 24551.9752 559175.9704 59363.6176 107218.0311 108821.533 26370.4141 21762.2726 37194.3841 58967.4587 106769175 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 10510.1682 23777.971 6556.23 10845.9536 35154.979 5007.7724 252672.9268 4782.6117 20532.3436 19644.5838 79172.5336 5138.8868 9607.0509 7761.2102 5093.7462 5093.7462 16412.4307 7859.7495 332888.0404 4222.734 4627.9992 3952.7287 9881.7323 2985.1428 28008.3917 8373.9319 17256.2275 2927.058 5388.1762 10774.8221 3162.8849 292487233 cysJ Sulfur Reduction NA Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 4752.8506 2483.5102 5031.9292 3356.926 5009.3301 7759.0322 7759.0322 5243.7983 4803.385 4322.266 3194.7218 9238.2289 3845.099 14965.7595 4089.8039 6239.0646 4116.6331 4045.7257 18803.3402 3607.3481 270513355 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 61740.4952 55398.7885 49962.3437 271142.6539 68756.9654 13179.8712 11418.3292 7883.7097 17039.2163 24442.9949 12757.0396 427480.1254 26098.3768 18758.832 37958.3973 143531.5495 143531.5495 13223.6326 29307.4779 27944.865 11013.838 21364.9051 24867.8369 8083.1436 29718.5153 52502.5038 18353.9598 47769.0361 22638.3945 26249.0854 10203.0222 13859.1632 24088.0982 10174.7312 26090.7998 328880627 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 16932.0685 4483.9694 12694.5002 6725.0195 2425.1508 6327.0472 5309.6887 190130.9436 6521.0428 2754.6888 94548.7583 7651.2583 4704.365 7328.6694 5266.0775 5266.0775 3655.0308 8336.6286 6050.2442 6219.0272 6296.8395 13948.7749 2932.1216 4338.708 16025.0441 5206.3809 31528.3267 8416.484 11341.3916 5027.8366 8254.4196 5543.8615 2407.5119 9518.2512 110819013 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 22787.3081 43878.4544 25954.7968 10471.2946 12297.2122 11566.7202 41953.0113 23914.1339 35176.1896 16047.5377 374262.9476 25637.3828 22623.0907 13636.9137 16811.8081 16811.8081 16682.3241 40895.7375 22321.7649 37732.29 81029.1177 36416.6891 10677.173 17440.042 36365.6346 17609.1218 43052.4893 16653.5829 29158.3467 9651.7492 16282.2177 14951.2645 14980.5522 36850.3583 358639846 exaa(moxf) Organic Remediation Chlorinated solvents NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 123382.8762 782466.0257 47707.2614 170672.206 17255.9166 211380.9688 79801.9076 67012.201 82393.6396 111136.1987 117669.451 2107930.0384 133808.4357 102139.6256 166090.428 153909.8239 153909.8239 73243.7748 115673.9812 142281.1852 96277.5277 79183.3112 184764.0627 43919.5733 74903.7268 253047.8642 69335.2824 276932.8366 180228.8499 145720.8389 33752.3495 116396.4807 90149.9125 68254.2982 82785.492 154156163 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 6846.4303 14757.3847 29072.6046 9670.0373 6597.5031 5903.0008 52736.7672 5318.6729 36687.698 9456.9584 2317824.0094 21701.2669 16264.8524 12401.1287 7372.4577 7372.4577 4453.6102 11350.7287 17475.2411 11441.8555 10357.7831 6734.1977 4322.9738 9288.5837 13978.8207 7683.0014 19625.6645 17678.0928 23859.7202 6119.091 8603.8102 23688.1658 8247.5646 13188.0297 156532308 tfda Organic Remediation Aromatics Chlorinated aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 25859.3242 45951.6364 13820.719 15268.6199 14761.4015 9551.5044 12967.3812 40368.677 15193.0806 22499.533 102381.1381 363023.127 46174.6195 33883.3886 47472.2583 26960.4368 26960.4368 26141.8223 45091.2886 19964.8985 22097.0867 51515.1944 49044.2202 14768.6774 15948.5069 40444.0724 23247.6024 77975.8115 28544.6267 36747.1128 12183.14 20554.5836 18716.6395 13043.6985 39363.1437 319943345 TIM Carbon Cycling Carbon fixation Calvin cycle Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 24030.4814 2437.3321 71828.4162 4307.8851 3196.0115 3196.0115 6140.9397 16564.5384 12176.9344 6381.5301 15136.5129 2934.6659 4508.588 5038.533 2659.269 260223404 vana Carbon Cycling Carbon degradation Vanillin/Lignin Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 11984.981 22544.8775 22225.2278 53046.1803 9966.6364 25928.8267 13074.4812 9124.0355 14827.1888 22703.1915 14359.7071 478228.6141 22658.253 20809.0375 19907.7419 18801.3971 18801.3971 56693.8319 37132.307 15800.9815 10446.2084 16941.9781 17126.4145 6432.0925 12456.9394 39176.3733 20706.8467 44097.7658 29359.0868 25205.6774 12504.5931 17202.4132 12688.1475 8714.2373 19140.5368 229851079 xyla Carbon Cycling Carbon degradation Hemicellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 99099.7277 26197.4206 19802.6853 19835.6682 4941.6299 26690.8051 40567.7784 118359.494 28300.1482 84401.7068 53329.7972 595825.0284 47619.0626 200526.371 23712.6891 40547.6217 40547.6217 20824.7935 62416.1664 28448.6633 29103.6184 62911.839 35262.179 56703.4665 18531.8856 26997.9855 44300.5715 76935.8702 49815.9754 50654.6301 35422.3517 49157.7071 37703.3445 36215.6043 96435.3132 91977888 arsm Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 12666.1015 13013.7431 2663.9305 5583.3173 5870.4239 5773.5056 7331.5094 3247.7093 158916.6031 4996.3011 7490.3001 13890.8238 13890.8238 7107.8591 19669.3901 10145.2421 9853.2288 11085.9373 16062.8775 4460.8501 5472.7359 9675.5564 5127.8199 19235.5035 9063.1688 12574.5112 7871.8643 6563.6203 6356.8653 6439.4171 9431.2188 285026953 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 11696.8268 13648.326 12787.6621 9984.9588 3202.295 12180.0437 5812.9734 9511.3552 27481.4927 168611.7934 8378.549 9705.3765 63942.1487 10071.6645 10071.6645 4902.3287 16477.8055 8540.0492 17178.9772 6370.9184 28485.6063 4828.611 7694.402 9900.9167 17265.136 16375.4417 12015.9733 15012.6902 3579.4906 13957.1393 8527.1765 13138.122 57242.9111 241320734 cysJ Sulfur Reduction NA Neisseria flavescens SK114 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 719864.869 103903.9035 531396.4733 1060917.0931 3047446.604 829075.8957 418768.1829 655103.1668 481619.4896 565629.8975 691200.6608 368631.2659 16553870.5601 825738.1773 711536.5028 1515535.355 590240.4923 590240.4923 461017.0586 691624.995 438952.8773 557274.5345 817755.7576 1206961.8399 371924.3159 488207.4556 970532.8602 303954.4818 1125086.8276 625021.4327 684486.0711 423516.6536 367753.4789 399478.9942 339079.4818 1002762.7115 288315598 cellobiase Carbon Cycling Carbon degradation Cellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5496.7356 2862.8188 2493.6098 3648.8967 5292.764 82154.2891 5107.0402 2531.8758 2531.8758 3630.0069 6597.8173 5219.5438 3740.7887 7979.9396 5425.1949 6058.1598 10592.5776 4745.0662 7518.9837 2820.2158 5310.6595 2666.4921 5799.2464 374655659 bphd Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 5984.9455 4857.565 4714.0275 1948.096 3000.0321 12754.8763 4717.8436 83161.9395 4428.0944 6562.5651 5708.6941 4402.6087 4402.6087 4927.4969 9732.2883 5291.88 12791.5193 7710.6238 6470.2839 6051.0229 3980.8728 7914.5138 4393.6161 10366.3748 8582.053 6862.5273 2033.3708 5452.9245 8777.612 2399.9774 6549.1247 68164686 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37785.747 14035.4178 16771.8037 10864.0597 10551.1065 7375.3342 39584.8945 16718.1167 14957.2049 24842.0387 25117.4819 14275.2166 528435.3617 37089.9419 21617.7492 14382.6114 13050.4938 13050.4938 15000.6071 38714.3369 27948.1761 26251.3198 25079.15 25103.6875 87635.9727 14676.2335 28437.9684 12752.8872 89308.8126 26368.8085 27667.9111 14470.8922 13823.1247 29746.2809 12587.4653 40578.4151 70733269 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 118356.0326 1628676.4742 484083.9343 27468.6903 29814.4522 70186.7233 17541.0455 320347.3767 69219.6429 93560.6347 73698.637 47732.778 2259555.5694 43496.2572 104166.3054 87254.3811 106798.901 106798.901 203567.7164 77784.2671 29069.0317 360880.0892 170388.4806 505539.3787 23942.6975 38367.3708 88465.4736 101896.183 88203.9642 63244.9633 134193.9063 39426.6908 40704.2753 57149.2723 41043.3659 81169.9331 374846270 vgb Virulence Antibiotic resistance Degradation Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 12910.7887 6794.5228 6602.0299 11689.3457 5832.7841 9298.7865 7275.2951 11203.1721 14907.4428 8750.9004 227645.0301 10424.661 8972.9599 5253.2272 7301.7249 7301.7249 10137.8588 19447.0818 9701.8818 22381.9727 16349.8663 15410.0768 7507.7545 6291.3723 13723.9483 6003.6539 25865.1857 5210.3776 15337.9231 18604.8502 9289.5748 15880.3452 5255.829 23084.9355 295896235 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 10370.4885 33960.7655 21927.1594 8138.1252 6614.2435 15102.4551 6555.6046 30422.4929 5098.8434 6464.2913 15058.9199 9383.7952 155017.6111 7249.5797 7821.0487 19617.1258 13304.5489 13304.5489 4959.1948 8908.5899 10597.5755 6512.6143 52366.1573 3852.6608 6142.0437 15203.0844 27676.7926 21797.5285 16651.9943 12654.137 5301.6676 10898.2962 7516.4166 10002.6726 30097.3592 268311625 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 3873.1978 31418.1219 2500.2115 5472.5076 1903.9911 8421.4707 5032.6681 67333.8262 7651.4827 4695.4948 6622.0475 6622.0475 3983.6509 13136.5763 5370.0424 5775.0086 9500.7168 2620.4109 31314.9383 8550.4449 5972.5602 18144.6002 9039.0672 9792.2225 4038.8065 6694.6228 7091.3335 3485.9843 6003.556 167031251 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8259.2342 6396.7071 46906.4057 2987.1452 2313.2414 22924.9137 4207.0056 3171.3575 127677.9005 6419.7174 3651.2007 5790.1624 3983.8699 3983.8699 4767.4005 11899.4834 6608.4191 50441.754 10404.2131 8404.2409 3454.4527 3163.5807 9508.507 12485.9781 11813.8158 9948.8513 3619.1346 5199.3072 4550.1212 5665.5051 11803.7966 378716099 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 19235.7633 288929521 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 5651.3488 5152.5438 2359.4474 3696.2103 4110.4526 2381.4065 5097.2462 3785.5013 11919.3869 6276.7969 5903.9017 6772.2083 6458.6304 3051.5995 9280.3437 5675.126 3500.0872 2950.1883 8803.183 3258.654 2606.0732 3365.883 2402.5667 4668.2182 335337154 nosz Nitrogen Denitrification NA Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 10938.7733 2566.5516 9801.6049 5050.0099 6385.3533 3582.5801 11430.0446 10850.942 4582.1795 3174.5693 3174.5693 2630.7769 14595.666 3886.158 18291.0935 2366.0949 4266.2533 8159.416 4873.5667 79249.4894 21491.4928 11483.444 4372.5445 38359.7622 6118.1117 2239.4228 114320423 fccab Sulfur Sulfide Oxidation NA Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 11567.1145 6081.4876 4839.7165 5934.6109 4725.737 4372.3506 6776.9325 3239.942 4637.5016 295894785 nira Nitrogen Assimilatory N reduction NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 248855.2029 30641.3061 32422.5891 23826.1894 48803.4908 19262.732 54878.3745 59692.7095 33206.3964 39449.633 65818.9841 101091.2462 994399.0554 110042.8494 57175.3921 64657.3916 111331.0901 111331.0901 255444.5496 85670.6457 52050.0723 189702.1227 121833.6616 32793.6993 28325.6478 68482.8722 70812.4361 60987.3698 186279.032 93792.2139 79390.7194 32751.1582 52086.3101 70016.0836 29545.1568 89824.5076 52785146 RgaE Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9394.4511 6216.2341 6086.5005 2350.8071 3516.7166 34880.8843 2510.8511 5539.038 7738.8529 4451.1561 2659.0038 17623.2799 8768.9756 7657.6736 8241.046 2510.5258 8348.9822 12776.1003 22048.0426 12168.4782 8671.7092 16258.7045 3008.9416 4950.8327 9576.7376 2690.0935 5024.5566 118592923 poba Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 4294 5043.4495 4353.6763 3914.8684 2604.64355 4511.0976 6578.912 5807.3738 101902.5646 5371.8042 7026.8863 2682.6444 2682.6444 3112.7871 11072.6383 5511.2666 16320.7298 5604.9784 4699.39015 2598.45315 4054.5445 7442.1726 3652.0615 11713.6979 11983.86955 7522.73715 3489.0443 4736.12775 6092.45805 3115.5807 11648.5184 161383874 phn Organic Remediation Herbicides related compound NA Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 39036.4349 89287.7333 42959.0293 27433.1026 27510.6652 39641.7928 34753.7427 20614.1921 25345.9717 38301.7158 46804.4264 361950.4288 67103.3467 25001.8421 59279.5643 26087.5625 26087.5625 17116.3059 77467.091 31365.8007 65094.533 35175.4206 34136.9731 23628.7074 27093.1227 35904.7357 34657.2777 49864.0347 37657.8781 36508.3975 20832.2747 35825.0745 47732.6521 27490.6216 34706.2714 365899348 badh Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 174979.4153 13212.4325 40304.1853 83458.648 49696.6329 14997.031 47787.0971 186185.8697 56394.5967 30291.9004 213331.7195 44631.2092 2610703.0064 50798.5642 315377.0618 250154.4794 139680.594 139680.594 109296.4656 101820.7673 41554.8411 51909.033 435801.8308 44360.4969 92022.1405 69369.7724 266697.8095 102487.8415 156608.6692 599374.0667 87821.2882 46017.982 157840.9975 72433.1156 65591.7467 140181.3892 257169645 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 72408.3207 28952.3074 337878.9437 105294.0695 87010.6793 19887.7771 68197.4606 54356.2091 71205.733 55125.8594 67099.6957 50231.1821 4111191.1245 168383.5001 127505.8003 500463.7384 78579.2045 78579.2045 49600.1042 130900.7278 68018.5634 408215.7171 120439.1269 102324.37 45270.6414 48637.1168 116244.6261 59991.8333 175021.1238 109735.3356 88848.7458 61746.7326 102148.5229 64160.0149 89681.7215 155312.2845 240247502 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11016.4327 143400.3979 30323.0713 8835.9198 10018.0253 4324.7287 8749.4501 12816.2026 9946.821 105000.9509 8959.0271 8769.0242 5424.6876 8228.3929 8228.3929 12728.5168 15559.9504 9530.9069 10696.7554 8336.8856 8360.1034 7648.0313 28621.891 12758.6528 5547.6262 25482.1162 10240.8391 14858.5943 13039.3225 8981.7823 12242.6278 5346.697 11346.617 256389689 endoglucanase Carbon Cycling Carbon degradation Cellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 210207.4593 23524.907 73378.8696 54601.0132 94609.2591 20133.561 42928.5884 50368.2214 166414.0489 82480.2233 104038.4184 103023.0936 941611.7808 54405.6956 95726.7008 116455.7347 90340.5034 90340.5034 46956.3108 89227.5744 37632.0985 123362.6927 99676.0736 536694.4279 42392.2068 73288.6222 159907.4851 73358.2262 140062.9467 32130.9383 88139.7817 66453.2472 57031.4933 160669.9043 78800.2127 356476.7063 384090032 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 6057.7822 5992.6779 3734.1646 7183.1066 4137.0941 6167.213 6041.0522 4295.9647 302701.0173 7631.0194 9358.5964 4742.6053 3687.2304 3687.2304 5443.0867 11436.3458 6671.2077 5240.3724 6942.4227 8405.0032 4038.5193 3834.0066 7618.9994 6741.4153 13134.1869 4542.5718 12823.7705 6146.5273 5455.2054 5309.8505 3783.6203 6762.2046 77379166 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 6388.8967 2619.4476 2573.9882 3376.5967 5505.9571 8306.7212 3082.4887 8921.1818 4100.514 6671.486 6032.0989 2527.4889 3293.4189 5809.4436 2643.6911 14202.7626 5369.8985 9275.0766 5020.2041 4712.879 4656.9156 2203.1755 5819.4502 295977453 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 7194.7222 130974.6032 1534948.3373 7297.6449 3707.6272 16463.2912 4372.5309 4476.6436 4414.5231 4716.9576 5230.9282 7125.4879 7125.4879 3023.6609 8200.0054 4824.3193 5320.1229 8590.6072 2250.9003 3315.7393 6364.5522 2865.6019 9124.7376 3626.0755 11408.312 2665.1681 4605.2856 3426.4738 3172.7064 45793.6247 32895108 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5246.2437 67694.1817 9504.7925 4985.0875 3091.4277 52350279 RgaE Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 4410.0216 8217.9257 9655.7627 2778.6962 2855.1847 7947.0944 2473.0043 62479.2845 3094.522 6128.4474 3169.8617 3169.8617 3360.4344 8422.7048 4158.0597 4949.3086 5565.0679 2974.7897 8307.6004 2896.9946 9218.384 3636.3765 5553.2134 24924.3209 11675.8778 8545.0946 3575.7134 87281294 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15252.6517 13693.3168 9952.3258 12426.8795 13001.4958 6666.5412 7568.056 10290.6779 14602.8029 5396.8618 274127.7921 17119.9529 13401.5311 8221.596 6459.5696 6459.5696 11141.8186 14349.9708 12348.9427 14484.7438 15175.7603 18696.9457 6681.8241 7448.6633 16098.8148 12524.0029 26454.6111 11799.5524 18677.2117 8136.4123 7353.7589 10935.6655 9392.5089 19932.9356 120590559 endochitinase Carbon Cycling Carbon degradation Chitin Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 6700.7642 27886.0621 12941.8259 9849.3264 7346.3786 3964.7327 5287.0442 8155.2895 6254.3962 131405.4315 7286.4096 9691.3842 11443.1078 6155.8502 6155.8502 3487.0994 12126.8293 7898.0929 5737.9062 6601.2937 14062.9178 3943.5437 10218.0786 11028.2298 7794.8123 15287.7017 8789.1364 12333.1623 5831.9341 7462.8351 9478.6064 8092.4003 10695.3404 390449641 terc Metal Homeostasis Tellurium Detoxification Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 16110.8186 8411.3398 8103.5555 8086.2796 6110.8311 10447.3464 28258.7562 7635.2604 238417.468 12795.0992 11320.3173 9650.1758 7528.5373 7528.5373 8710.9056 29110.245 13100.9199 9641.4239 9305.1227 8994.0085 6749.1581 8717.7925 12609.2643 8499.4987 28601.2622 11444.7567 13575.0755 11458.305 7466.6791 10509.5714 6963.0277 98441.4581 134076503 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 10178.2794 4351.9032 2715.3283 75382.0522 5486.6585 5784.0436 8687.1024 44554.0512 44554.0512 7179.2256 5151.3497 2423.6796 31402.7565 8293.0336 4796.403 9562.3203 3269.9117 6021.6423 91787506 ben_bcla virulence NA NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 6677.1411 5463.1751 11301.5789 11537.263 2921.308 5987.3684 3350.1002 3145.6752 114464.9954 5031.9204 6557.2238 8311.5578 5792.6837 5792.6837 6676.1686 3558.9446 4481.8632 18431.0843 2855.2598 7635.5265 10789.0454 7160.5718 4369.1467 4879.8814 5349.3523 2100.4951 11768.016 146188529 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19253.2919 13748.5619 15361.1407 30233.9732 25254.3482 10341.124 8900.1946 11454.604 18705.3427 17427.9154 10975.6888 346065.8027 19898.7056 14662.8616 17083.5183 12084.2847 12084.2847 13229.3637 26794.0301 21783.6318 22990.2719 20423.475 22656.6913 13256.5678 7783.1978 22329.0982 11968.1017 42963.9204 22882.6752 26846.8395 9764.2965 12358.0518 11740.4885 9590.3012 28265.6533 290962060 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 55794.4553 14038.7063 496621.4067 62736.7956 66903.1111 12275.6576 176487.9555 15276.4445 29027.7658 30364.3375 25640.8611 436348.4976 47903.6742 23942.5455 27630.1177 65975.2506 65975.2506 17296.4908 28044.5939 17122.7417 39166.8606 53536.7864 144490.2093 15657.8164 36949.0751 25626.0246 15894.2347 44002.8787 15843.2277 33305.7175 90518.6876 21040.9783 213435.2255 23519.7695 275144.9134 284015965 pme Carbon Cycling Carbon degradation Pectin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 5726.5659 3519.4194 5968.5533 2625.7809 74045.07 8211.1512 3423.8071 2130.8786 2130.8786 2776.1233 12108.5715 6208.4013 3555.8193 9603.0593 4385.7931 4111.0799 3745.7608 4946.6168 2219.3067 7160.5037 7514.9559 6932.3322 2456.3812 5610.1098 5169.05 3525.7242 7695.1478 375103625 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 8785.2106 6254.6561 6855.6277 5708.5404 8222.5701 4530.1705 13745.505 7359.1297 99413.6595 14138.55 7594.7557 13317.9878 5716.544 5716.544 13671.5075 13913.7373 9237.6793 8899.2968 66157.3124 6981.8217 12492.3523 4776.0998 9082.3073 11487.0223 24585.8311 18280.7936 10829.9892 4163.4383 6966.0058 6231.8488 3801.8504 8704.4604 376372744 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7819.732 8761.5448 7482.3156 9388.9804 5930.2422 2243.1502 7528.6947 4459.4785 3565.5287 91009.165 6110.1365 5686.1476 5480.9723 10371.8629 10371.8629 4916.5407 17674.196 11128.6742 3605.5007 6057.0794 8915.3572 2513.7259 6819.7671 20735.953 3615.975 13433.2447 5634.8101 14243.9014 7050.5005 8757.8524 7275.1966 3238.3285 5081.2405 319439458 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 4419.4605 4760.8647 4734.6653 4096.5955 6334.0359 2168.5298 6980.8634 7345.5211 2989.7548 117007.0386 7954.6414 7392.7527 2149.1872 2149.1872 3887.8582 11919.1038 3842.8051 5619.0651 5219.8842 6584.9045 3446.0506 6176.0144 3072.1978 4534.3931 7361.4872 3981.4316 7000.631 3690.6712 3310.8078 6544.1295 191164679 mer Metal Homeostasis Mercury Detoxification Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 19491.9043 85550.4346 222389.3933 23796.9788 5265.1169 29082.5188 12953.0033 4657.2342 50304.5933 23927.1735 29115.0585 526905.2277 20061.8399 17828.1828 13033.8001 26226.1807 26226.1807 35708.5546 27078.7301 19207.6088 21083.2072 13541.3215 25119.4179 10025.4328 21305.3376 19286.0219 27841.7418 33542.1695 29688.8419 32509.1277 115161.0364 14844.0608 16977.1075 29050.7057 16433.1239 187735438 ppx Phosphorus Polyphosphate degradation NA Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 6213.2314 29847.8186 3932.1269 3143.5601 3695.105 3666.3497 7105.1126 3548.394 111096.4227 5912.8924 4762.8712 2816.2788 2816.2788 30837.1559 5762.7276 4974.1318 7213.3957 3438.5362 8074.8557 3630.1526 31540.7226 4384.0972 8696.2528 4293.8771 4844.245 4614.2339 4217.2114 4909.4606 351688391 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Natronobacterium gregoryi SP2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronobacterium;species:Natronobacterium gregoryi; 4440.8734 2156.8292 7134.7751 3963.9513 8164.671 12772.5606 10690.0239 7404.5653 7404.5653 9455.7117 9179.2156 40249.2677 306207.2993 4912.7171 32900.4138 9781.4658 9194.7487 5103.7499 1784.1151 3415.8202 5033.1649 5164.6872 357940180 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 48001.528 15333.9668 13052.568 53722.9539 17828.0577 26909.0068 10472.4297 15996.977 32706.8023 20183.6852 521436.3894 29833.2952 21587.581 21554.5295 16999.4194 16999.4194 12800.9994 44939.7146 28301.5457 42058.4278 40116.128 25825.9523 46550.3605 15644.5129 30357.2318 16132.2063 73265.2345 28421.2772 40060.4919 17832.6445 23879.6255 22578.1244 22155.0205 33158.2209 288335822 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella melaninogenica D18 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 10803.7043 6759.6484 11499.7338 3941.4156 6554.2722 3699.8955 9672.3889 9761.2305 6090.946 201738.2964 11850.1438 10124.26 7850.2275 3879.9562 3879.9562 7012.9742 14176.856 9155.5746 12811.8721 15016.0307 20297.9275 6008.9245 5654.7353 12618.862 5710.8988 20240.8483 11339.0443 15536.677 4772.2603 6446.7565 9928.5885 4752.3353 18391.0497 302423302 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 13624.365 11832.2426 4543.4628 8844.7971 5477.8401 6882.71315 30618.1796 117829.2608 5635.6021 33761.1927 4096.76205 4096.76205 5006.0472 13666.1354 11740.0706 11518.3169 7985.5717 4052.8125 7011.9911 3603.1299 11713.9737 17776.5223 5959.6718 12086.1555 16330.1189 7027.4406 90954583 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 92449.5545 39345.5175 108771.0199 43159.5415 17398.5073 44654.663 67107.4708 300533.6808 162233.1608 83413.0364 79491.029 49884.8228 1332996.0074 75011.6637 273156.2559 129768.6879 85121.7638 85121.7638 77519.8307 107669.6225 69006.2571 372417.7589 155364.5711 159165.4553 80846.3851 54693.7816 53654.4213 39751.2566 154749.5255 59620.9689 65205.4581 68670.0165 49045.8129 73691.1766 36035.7569 125297.5816 354955248 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 20081.0766 13791.1007 12185.8464 9943.3209 24299.1872 18270.6082 19010.2677 13993.7932 32360.1162 24976.8342 29727.6165 494201.873 32316.0091 20945.6474 10238.7736 16710.4069 16710.4069 16476.1768 24349.8214 23952.3558 26599.2883 24418.5489 30018.001 14887.4927 11464.3714 82830.7609 30685.3081 48597.068 28470.9241 30177.2814 15403.1574 14169.403 32552.1265 11969.3272 30606.3009 296130681 ara Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 39679.1135 85551.7827 4254.1957 30995.9795 11894.7331 6880.4505 10794.242 7444.197 13213.1902 406298.4018 5711.6452 12274.6235 46784.9685 14073.8916 14073.8916 5404.3695 21455.4529 11217.5546 17003.0936 10476.0857 5349.4553 13649.3765 21969.6476 16009.2723 10728.7536 58265.9535 7840.1862 28309.1623 7264.993 16984.4328 37355.8617 31192.9531 23967.4713 145205577 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 27529.0258 8109.5352 19777.0704 9771.4344 3270.806 14343.06 16733.7678 5826.1456 139435.1204 7711.8502 87954.9585 4847.9901 6746.241 6746.241 36681.9625 8441.212 10617.6795 17960.5939 12413.635 8456.1531 7935.2411 15550.7976 5910.8521 61757.3188 11882.2014 9716.8527 11788.8054 5314.2075 15323.5108 4886.1287 35445.7576 381357447 nitrilase Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8226.8332 19916.1187 2244.9889 62352.1014 3636.6132 15466.76 2289.2199 30191.7868 2773.6241 4099.2679 336321652 ara Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 21472.9295 47847.5028 98053.6815 12178.1368 52179.0642 34805.0363 26965.6337 26114.9068 2208.2436 14140.133 15423.1191 41716.7789 266263.4885 17379.7329 20213.3957 28101.9451 30485.6396 30485.6396 8344.5359 30403.9074 17910.9382 592441.6801 20708.4716 14849.7686 8126.6559 14071.0609 26472.2033 16934.3099 53777.7212 29093.3554 31221.8547 8802.0036 15221.0335 24363.4451 10459.0615 12794.7023 386399016 linb Organic Remediation Pesticides related compound NA Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 20703.7098 5321.4239 6608.4241 5136.7944 328451846 mer Metal Homeostasis Mercury Detoxification Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 6481.1691 14819.8322 16331.211 5444.8752 9867.9606 1975.1844 4118.7469 7006.4994 4501.1377 5891.7547 58685.7722 3796.2643 4465.3931 4363.9339 2907.9957 2907.9957 2607.9915 7075.972 5102.855 5803.63 4125.1591 5526.8399 3066.9152 2493.281 7144.7689 3464.1168 11554.1216 7166.4462 2864.9456 4599.8493 2849.3524 4600.897 380494657 dehh109 Organic Remediation Chlorinated solvents NA Colletotrichum higginsianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 184524.7617 12160.958 88720.9016 286089.7831 36842.8898 21697.0956 21390.9407 37823.6758 57195.2796 43784.2999 55987.8019 26664.696 19918.8028 47091.0137 36862.6902 98397.4752 39747.8102 39747.8102 40048.0703 56377.8005 32129.5022 64769.1683 57817.7358 225219.4907 28627.206 59175.5907 34721.2835 16774.8837 100679.2393 43362.9134 61282.1143 16141.8817 42239.6259 46400.5659 51366.435 55185.7121 158438405 trzn Organic Remediation Herbicides related compound NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 6043.6299 46062.6344 43961.4783 4574.6745 5788.14435 5555.54705 4141.5613 77277.8836 5550.11285 6535.12245 4820.70335 2770.2434 2770.2434 7456.8401 15110.6186 8077.7322 5564.7637 7276.6666 5654.9231 4449.98445 5190.74055 8877.55175 10230.6121 16035.94255 7703.0524 9754.92835 4419.4642 5691.02525 13062.47355 3739.7476 14829.0359 74038344 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 128179.4701 29002.5777 1165221.4363 30319.0063 779228.6917 271803.1309 206521.496 30229.8658 38812.6857 44064.8679 30593.9385 775848.2433 76020.3862 88103.1157 59039.0481 71497.695 71497.695 26995.9003 125288.1168 34806.9425 48328.7326 22238.2328 86883.8497 19223.721 80256.0444 143108.5145 34013.9 86492.9227 46801.1215 58385.0112 55493.7746 22573.2152 25758.3514 25615.366 31712.5977 357077367 limeh Carbon Cycling Carbon degradation Terpenes Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5053.916 34150.7908 4019.0488 5333.5311 19416.7639 8807.3216 105484.7423 8011.3459 3710.1901 8279.51 8279.51 2984.6771 8277.2962 7139.5752 4543.4964 11651.9028 9015.9224 3753.9297 5595.8834 22094.7936 2659.9818 11450.7126 6118.0365 10691.7539 2044.7504 5765.0433 5847.0615 14574.7285 146323054 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 8615.6665 8402.2743 3116.2677 2681.7781 5560.1349 6117.7426 3101.3659 83843.0804 4559.7486 5957.5079 6237.1447 2619.2495 2619.2495 3242.8883 8443.1825 7067.0642 3806.9328 4968.1045 9773.7925 4080.9655 4737.8735 7855.9361 2921.9052 13208.751 7242.2779 11184.1345 2054.2135 6774.2045 4156.2805 2273.8105 7157.3335 298550443 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 407310.7953 24514.6919 195898.0518 125156.5805 135239.1221 55380.5444 49978.1813 127339.8169 47898.9377 144401.9164 146218.2229 73430.0942 1166890.5259 107364.1275 85372.3872 105848.5827 135041.2339 135041.2339 159392.6404 103948.2293 78241.6272 106466.286 96914.9452 43705.4348 83654.8346 56261.6677 113829.3389 76810.9976 495236.4664 79603.061 84594.1688 73775.1026 98955.5058 103976.3753 178884.5622 40484.2985 39574707 xylg Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 9076.0551 8247.0682 5943.6692 10919.0977 6021.0176 18326.8168 4111.1997 5392.3306 87117.3978 8176.2638 4984.9703 5385.682 3888.5358 3888.5358 5006.0195 10339.1492 5705.7678 5857.6528 6477.4355 4465.1783 7062.6298 2706.0735 15128.3544 9226.24 7334.761 6258.4744 7326.1997 5243.3122 3914.1037 5493.159 319977609 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 109446.1275 73443.363 128358.9629 979998.7889 97699.9068 29836.8362 308852.3773 104635.7765 71664.9114 77228.8977 106361.7931 110540.7642 2991203.7669 118780.3826 123003.9118 107314.2505 96734.3435 96734.3435 61875.2831 115369.7832 93848.1235 102472.3223 142761.5355 101002.5815 66397.7608 44561.0609 85479.0944 83999.3941 183813.1552 146780.9556 113314.0201 69976.6418 58558.0282 75342.3611 87235.1345 118806.8486 192897524 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 8490.0321 2674.3265 2111.6366 4225.9759 161932.7218 6973.2216 13554.2366 7106.5167 4189.5565 129632.0971 2383.2028 3626.2073 359278874 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. PCC-P superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 7424.6697 19070.3003 5218.6221 38928.6661 6037.4537 8613.9364 4362.8034 8268.2473 9162.7752 46965.5096 8844.9078 249542.9017 5884.607 11462.7573 34654.7123 13066.1733 13066.1733 3886.3576 9764.1355 6586.8447 4778.0943 4723.4314 3489.7697 23200.5026 10552.8224 3745.8909 20974.6933 10716.515 7499.9069 4605.4572 6605.8015 7639.4372 5142.709 36967.1416 359401893 mer Metal Homeostasis Mercury Detoxification Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 15080.2062 14605.9359 16511.2622 19977.7036 5106.6971 2887.9454 5248.6798 7755.3366 5849.7597 147640.7284 8618.7452 8231.2847 8301.723 8703.838 8703.838 9655.7389 9769.9321 10035.9892 8457.3965 10091.1547 9164.9387 4899.5882 6582.7763 10629.6978 4970.8992 16223.2283 15394.0651 14547.3733 4693.4858 6274.6324 6641.5305 2375.7504 8969.8954 167647359 cellobiase Carbon Cycling Carbon degradation Cellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 11124.2913 45760.7151 18934.321 36154.623 4624.4707 7104.5839 3789.6572 6723.5567 8843.5086 8743.2942 210531.2438 10532.3206 10874.3961 7686.185 14837.3279 14837.3279 3917.7832 22602.4484 8243.6609 6342.3461 18961.4881 8085.762 8384.9421 6541.4062 32531.3524 4544.5991 34908.9082 15901.3892 17622.7584 9042.1923 17025.3227 11720.8697 7341.7548 13450.9666 109452500 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23078.8807 33836.7364 15258.0442 12754.9357 13599.4395 37050.4916 8185.5975 44425.7433 18252.9303 14003.6911 41159.2306 163620.1189 20697.8739 16419.2657 25549.5366 22775.4464 22775.4464 7271.8622 52758.3715 17986.4637 49475.1985 25717.4504 16646.2919 10795.6949 22620.1075 10599.7343 11488.3987 42848.3147 27126.0462 25893.0433 8113.6225 25927.8894 38497.8617 59091.3733 41794.6183 308812147 terc Metal Homeostasis Tellurium Detoxification Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 61207.3175 8006.7552 8373.7639 13926.799 39537.8577 18043.0108 20017.5289 15310.795 47867.3679 441605.7501 12972.1724 31671.2115 12880.8149 27415.5122 27415.5122 32652.4041 29813.3607 15653.9608 19718.1058 21549.3084 18330.8878 16676.5196 27111.5186 14390.8633 36997.9957 49813.4133 23254.9291 37953.4318 15478.5659 37478.885 33713.7153 21710.5347 74257.7765 21220367 pme Carbon Cycling Carbon degradation Pectin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 21507.9883 4630.3165 5658.4168 11721.8537 7831.8666 9778.502 31466.1808 9330.4224 18786.3263 13256.0076 10352.8876 196227.9482 7954.1946 9603.5133 30323.0913 16189.1132 16189.1132 14058.8901 20300.6009 36676.9509 23040.6114 49414.8358 11398.8256 7360.3001 32578.7647 25636.7304 21982.9925 57751.5888 13289.2789 25590.2872 20712.1771 34167.5345 20118.7237 15116.2615 13494.5556 302472977 pcpe Organic Remediation Herbicides related compound NA Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 12061.8091 14653.3375 11137.0884 20002.0602 5722.4444 6658.298 4293.838 7117.3149 39946.4774 172771.2804 28363.6027 9198.2876 55110.1801 9361.4135 9361.4135 22459.9838 25890.5478 11449.3262 48526.4237 11097.7585 5204.7568 8032.7201 12226.262 77552.4479 8605.186 27256.4337 17242.506 19273.2724 6014.094 49009.4899 15773.9923 4554.7345 15771.7008 260428545 ppk Phosphorus Polyphosphate synthesis NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 68735.6681 72199.8888 141816.6216 7229.1069 26961.186 8503.2054 2450.0946 11892.1416 11423.7481 29208.3663 171380.0245 10967.0146 12777.4318 18330.2767 9475.7249 9475.7249 11040.1367 19177.683 15367.0036 8725.8547 15634.5826 21061.7242 6177.5016 11627.7575 22516.6983 8673.4618 28867.3908 19015.7734 28412.5366 5659.4374 9547.1014 9855.8223 8838.8349 14813.3608 221636325 xamo Organic Remediation Other Hydrocarbons NA Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 4873.6827 4355.2768 11312.145 4409.2849 3602.5853 65453.3412 4989.1278 2827.57 5811.4607 3506.9013 5111.9225 5538.7776 11667.2083 2274.0403 2818.6329 10811.9221 10338.2497 5027.3657 6902.5229 2980.9415 3929.6401 5281.1301 3345.9878 6573.63 283439505 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 5630.4075 4318.7411 3136.5008 5021.8411 3664.5243 123472.705 6182.7157 5263.8473 4103.5363 9836.1704 14252.5781 6373.0578 5818.1687 6507.4464 4020.027 3256.4826 7323.5129 2883.4938 10340.7232 7208.3284 9144.4193 2495.7251 3619.352 4749.0242 3232.7452 6538.5761 383791438 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 8076.1796 3739.8483 4425.3644 4965.6271 9174.5667 5617.996 5605.9036 5156.9 4319.0306 4319.0306 4653.4752 6706.3415 7904.1047 7234.6997 6908.3643 2825.1464 7093.3108 2898.7751 11400.2147 7085.2273 8033.0339 2655.4316 6198.9808 6125.1069 2586.2439 18053.5218 225159314 Sir Sulfur sulfite reduction NA Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 4207.3556 20913.5298 9046.6331 2685.1537 2920.748 3922.0471 4131.6088 5341.7855 3021.8311 3021.8311 8602.5697 2866.9929 6124.9888 2373.5871 7078.5017 7292.2687 2175.6505 5620.9723 218758653 nifh Nitrogen Nitrogen fixation NA Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 20911.3936 20692.8802 9766.6108 22599.6798 21287.1555 9282.3874 12668.0841 14385.2605 24732.2162 272965.7266 15184.8594 13720.7517 52250.742 8251.3045 8251.3045 11234.7709 23520.5259 11321.6713 13890.4692 20246.2343 18257.7441 8311.5028 11041.0706 20853.4809 9839.1556 29740.5493 17855.7813 20240.9104 9031.4092 14506.4676 9730.1902 13637.1097 18338.7758 300665958 pgk Carbon Cycling Carbon fixation Calvin cycle Bartonella henselae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 40427.8389 9507.2468 2870.0402 8449.78 11333.0828 6022.8181 4270.4581 5465.7054 5308.1884 4365.5898 6230.479 5075.3727 2373.806 3390.5206 2546.6267 78093560 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16966.0957 11191.1229 6753.1288 6329.4959 114376.7903 13104.9619 442977.0745 10337.1163 5150.8005 3193.706 3193.706 7203.6684 11309.7428 9435.8184 16900.0353 12386.1678 21047.3218 4273.0219 5679.1421 11826.0102 8847.3731 16438.7071 12872.9335 10577.0622 5615.5636 9174.2607 12247.1274 4710.3648 10906.5445 83944274 poba Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7845.407 358321.4214 6866.631 5014.6104 15022.3181 18172.7894 16472.2506 8399.9193 9020.7924 3709.0755 457957.9638 8607.877 10519.9756 4621.6075 3925.8552 3925.8552 8407.5141 13097.7384 9047.5724 18101.8208 8152.42 16603.6436 3944.7485 4644.5002 12795.4326 7095.224 22892.1943 8849.0812 11638.4761 4398.7984 5779.1998 7923.8358 6690.0948 17674.5312 161339347 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 22255.7925 2077881.0586 1699740.7546 32655.0828 477876.473 15983.7286 17012.7392 16495.5556 13987.2156 32382.7412 1054231.0725 14487.7358 22940.5418 16822.4095 16189.3511 16189.3511 10491.7832 20586.2534 10196.2503 34992.7844 27945.0484 12320.8718 11736.3914 10074.4656 19779.4967 8667.095 25969.1263 12948.2176 27306.5405 10159.6688 12595.3509 15773.0554 9917.8776 92390.3695 34104418 terc Metal Homeostasis Tellurium Detoxification Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 30838.4322 38090.8418 14716.9227 7098.5864 15439.109 7236.4011 28523.7532 12153.9959 8600.4775 11464.2085 14725.1563 14611.7131 171169.5075 20648.9695 22694.4224 20754.4687 21386.0605 21386.0605 13388.5211 23235.6001 12007.69 26780.2248 28512.872 14387.3968 11813.1923 11616.7278 17837.7256 11331.3825 46039.2569 30111.2903 27470.1161 11673.7625 21660.6647 17474.3408 12156.7173 21514.6192 133913533 bend Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 109373.6548 165586.4195 51468.5722 45427.747 15107.5095 7538.5456 12215.8553 29838.6122 29322.3887 25397.8536 16572.4713 734353.9067 132070.0708 25660.7462 38050.103 35637.1327 35637.1327 17811.7445 99727.505 19111.2866 75802.6332 39093.4688 35815.4775 38466.5328 34784.4538 22750.1352 31285.5605 69822.0663 39193.9357 31725.6797 30941.407 34118.4942 14530.874 18640.7276 57555.6206 422314355 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10793.4164 306836326 terc Metal Homeostasis Tellurium Detoxification Corynebacterium accolens ATCC 49726 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 126796.7173 3708.5662 6477.5474 325104462 ppx Phosphorus Polyphosphate degradation NA Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 18008.1486 122715.7164 7822.1518 7743.4438 9421.7191 8826.1414 9379.9773 10650.0089 6218.84 173381.3852 8157.7793 11201.3681 12921.1743 4834.5146 4834.5146 7422.6909 21101.8939 9607.0723 11071.364 11353.3966 10928.0318 5608.9333 6868.5451 11878.0902 9976.9551 21471.4839 17844.6712 19790.0412 8410.0146 4290.4754 12478.0332 7142.3058 10121.634 316918611 terc Metal Homeostasis Tellurium Detoxification Enterobacteriaceae bacterium 9_2_54FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 14546.8651 13856.41 26717.2756 15194.5641 1222327.614 6075.7609 10532.2191 12315.7409 10081.3115 12907.6671 12904.2082 9267.2352 465000.2233 19847.123 13620.5449 17569.968 7697.0757 7697.0757 9175.8276 25963.9124 17803.4403 29068.164 20342.9684 15425.9382 7058.761 7766.9096 26332.8764 12196.9514 26697.0741 12377.1831 23698.3637 10915.8824 17553.2789 12535.1592 10076.0481 21336.196 260421898 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 13557.1762 21749.6899 13716.8643 9399.6418 11153.1348 14875.165 18974.4589 8059.8724 51388.4161 21328.3409 9527.0569 283048.894 13801.1824 246055.842 9146.7717 10563.0646 10563.0646 12824.5482 18205.8416 14191.1744 17898.2303 15304.5484 18822.6987 6792.1779 8844.4085 29267.722 6247.8767 19820.5141 7709.965 14096.8868 7784.2399 14996.0618 12157.9273 5951.3673 20459.6328 188990400 cysJ Sulfur Reduction NA Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 19703.0671 185321.0253 14973.997 55949.1623 12933.9818 19792.5888 13824.1142 9543.4157 22503.5914 20904.9766 18101.9721 409897.253 23278.2953 14150.2821 21730.9059 24457.3879 24457.3879 11094.9319 31537.9355 21770.5212 52278.7383 29074.2763 25958.6936 18095.4223 11941.3733 36041.185 16930.82 56757.4059 28983.9115 33458.1293 13992.6045 17619.4604 19779.7128 11867.5049 38215.0069 283481792 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 19121.864 2235836.9904 10828.1484 348398.8456 8227.3332 3439.3833 50215.8126 3295.4118 53127.8505 22561.7831 38104.9066 315082.2419 24337.8891 12634.0199 11567.5584 17363.8757 17363.8757 150532.2518 195800.6005 15427.0409 8026.6971 23098.7235 34052.0579 55670.4805 50917.1661 28979.715 18764.0714 83716.3617 70072.5468 46275.6638 50361.198 32534.3564 27715.8425 93719.158 8361.525 335421035 Sir Sulfur sulfite reduction NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 36843.739 6541.118 17455.9464 5033.4435 6726.7422 2301.6424 6169.7212 16460.5393 12053.0467 142147.8451 10663.0083 10264.0122 4728.3571 4728.3571 11068.8999 12320.6291 11706.3698 6875.9934 11701.993 7964.1005 6389.3374 4629.6577 12135.804 10140.432 24855.7567 15093.353 9211.1502 10394.9817 8081.241 7895.985 8559.008 12561.0627 342316560 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 14682.0393 9663.7496 7890.5416 9032.3021 6598.1659 4699.5507 8195.5825 26502.0715 21485.0683 192222.3657 72332.7255 8729.0554 10468.3075 11873.3022 11873.3022 9532.0777 38169.4762 21720.4634 18908.4305 14006.5917 244436.9659 16415.8551 9286.3849 13468.853 16253.5809 47277.4686 20816.782 31242.4348 6909.238 22053.9975 16257.108 39419.4717 87057.9293 302348162 amyA Carbon Cycling Carbon degradation Starch Acidilobus saccharovorans 345-15 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Acidilobales;family:Acidilobaceae;genus:Acidilobus;species:Acidilobus saccharovorans; 14963.5688 5085.5089 5763.7613 4390.5807 6298.3671 4773.2155 4820.9291 14442.2324 3548.95 147252.602 5591.8277 10823.3843 7946.3296 2855.0875 2855.0875 3938.2746 26187.7935 10951.1599 17609.4613 3640.437 3583.3514 8358.8949 3631.2044 13487.9945 4033.6851 7412.0706 5730.5089 6066.9727 9573.6363 3832.4034 12153.877 149950542 nrfa Nitrogen Dissimilatory N reduction NA Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 3758.342 2386.7944 5059.2413 4222.7179 3649.1861 3171.3754 2114.9821 10443.4722 4534.3157 6628.2217 2159.1577 3265.4661 4340.34 2320.6217 4910.0142 375139671 terc Metal Homeostasis Tellurium Detoxification Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3930.2902 7773.4188 3169.099 2294.8517 5031.3299 4045.207 196615.4225 5936.4704 45821.7022 16166.1619 6445.6726 11785.6078 3879.1635 33320472 dsrB Sulfur sulfite reduction NA Desulfovibrio piger superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 26446.0913 9848.7398 24084.0668 80965.9904 15401.8728 72615.3044 62531.3288 11051.6454 17290.6037 20484.1609 16395.9518 722185.357 18136.6632 18923.4309 24940.4401 16439.076 16439.076 14527.173 21346.5128 17348.1295 30813.3396 33289.4789 215848.1596 13425.3115 10681.7163 26904.7947 9831.4992 49006.8216 23631.6293 24682.9226 106972.0391 17029.4686 14873.6017 11285.9619 32000.3088 298293026 pgk Carbon Cycling Carbon fixation Calvin cycle Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 24629.8864 8687.3579 14236.1263 8511.8462 168975.0669 53227.9156 30849.3235 17701.7481 22957.7152 28410.4591 273217.7471 25149.2108 18354.1277 41738.917 40181.2479 40181.2479 36784.4277 46904.9994 36580.9392 28773.4006 40162.1553 22426.9038 80156.749 21252.7076 32902.7098 19848.4453 56682.4614 34890.995 41387.4249 25411.9879 37055.9164 32447.8165 30294.2231 64745.5236 184185910 EF1a_Stramenopiles Other Phylogenetic NA Cylindrotheca closterium superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;family:Bacillariaceae;genus:Cylindrotheca; 5400.6943 2729.6533 2323.4445 4340.4946 94070.7085 5967.2928 3971.4523 4575.9751 8215.8527 4620.6429 6438.8469 5459.3513 2620.9989 5902.7488 3866.5408 5983.4147 1687.0636 3655.0116 3334.2092 3208.1143 6448.9587 259345361 pgk Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 11711.5866 9740.4777 5061.7451 12723.2087 13003.1115 11268.371 7949.7262 5043.8915 11144.0418 17302.1617 12625.9102 657924.5826 13261.4027 9065.1988 9079.8982 8777.6444 8777.6444 11694.8882 27886.9341 13128.6526 18619.1916 15494.6266 18834.0093 8786.8941 7332.7534 16016.7685 19602.2934 30701.9677 18210.8555 17800.5842 6948.0758 12463.9904 12196.1462 8474.5232 19321.8746 292560787 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 142730.4471 32559.2593 57658.5692 44493.9246 33236.0098 15293.2602 42231.5315 198917.867 51110.0529 131387.5144 76122.7593 56241.6148 949823.8287 103053.8506 96331.8618 75369.2918 79530.0344 79530.0344 60575.8482 305773.7108 92161.5577 134120.2181 86015.8528 111553.2038 44984.2698 57246.9492 111236.3001 78052.8432 403788.1717 114605.956 133220.4822 64945.4784 73728.9109 86221.5378 30271.9571 101614.0162 378549849 catb Organic Remediation Aromatics BTEX and related aromatics Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 66228.8772 39035.6089 29098.2288 37651.96 10263.8109 29390.9427 25971.1951 14334.3141 35574.3632 45021.4282 36781.7254 1051382.1981 40179.027 27131.2049 31993.1576 23511.8687 23511.8687 23620.9496 55394.053 32198.4588 31840.6015 56723.5964 44105.3915 19462.692 20139.4432 52065.9346 16936.1576 67494.5852 35972.0289 56009.5315 18650.7478 26193.7168 36007.4393 64078.5185 43575.7442 15837420 endoglucanase Carbon Cycling Carbon degradation Cellulose Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 11101.6943 4232.2169 13704.3269 2258.9897 4250.3453 4250.3453 9181.4227 6893.9795 4899.7214 4602.2548 2987.8993 2190.2625 8501.7818 1945.5758 6019.713 3992.1753 5188.5392 133778528 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4351.1274 42515.2755 4977.6122 17696.7343 3684.4156 7429.8898 7020.1893 6406.9414 7527.7287 2985.042 156792.9721 4660.2926 9271.6066 21238.8746 7510.9499 7510.9499 5439.1183 12948.3893 8150.1954 10474.3552 16086.6434 4139.2864 3142.3241 5520.0617 14650.0322 3007.4488 18356.48 7491.6066 11523.9071 3376.3256 10599.2503 5501.2349 3007.9977 4634.2992 94984767 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 34300.7709 10103.451 5682.5594 4072.1297 107334.1792 7829.2988 84695.3904 8587.4608 14500.2535 9951.4843 3064.1073 3064.1073 248579.4234 32624.8062 6582.3232 30961.9044 11847.0096 1600884.383 215526.2509 8499.3164 6650.5706 20060.7483 20128.3338 16261.3592 13918.5234 2781.8352 3661.8477 7030.2426 13246.1614 4961.4728 154362252 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 3425.893 12216.5376 3316.9777 15465.6015 4912.7695 143954.0139 4032.699 4288.3869 2350.0331 4050.448 4262.3829 145554371 mer Metal Homeostasis Mercury Detoxification Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 13046.195 9381.2708 4952.0535 8697.6518 4369.6587 28648.4147 8356.2532 4126.3285 5401.4836 11480.614 30066.7499 201757.7081 10443.3023 37914.3183 180195.6887 13773.5276 13773.5276 25444.6743 33802.2342 18203.4375 9021.8952 51503.2407 9254.3663 12356.3904 28785.4326 16911.8343 8437.1844 29918.5938 11643.7773 15037.4788 3371.6932 12704.1662 18953.9276 9541.6706 8032.9376 254833164 phytase Phosphorus Phytic acid hydrolysis NA Trichoderma pleuroticola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 29340.0011 15055.4541 6163.1315 34813.5788 11368.0042 17149.9355 23317.3755 18081.7264 32707.7705 23051.1631 11802.3811 510350.4991 29296.6524 24145.0499 25567.1728 15878.3582 15878.3582 18805.6091 36429.2899 27051.7225 60223.1256 31928.0288 32102.5606 11400.6646 13104.3818 25379.083 12839.1792 71238.5572 24228.9706 32490.7191 14825.667 18179.7442 18696.4302 12940.298 26142.4102 288895441 pgk Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 6844.328 5564.0505 7015.9451 19069.2431 6371.0258 5811.4483 2882.7735 4752.2847 7737.7393 2503.8451 2941.5992 9309.876 10252.994 9893.3012 5712.2631 5712.2631 6441.487 13518.2485 16537.4568 13051.6227 7777.4836 10716.524 5223.858 7419.6588 17836.4386 3635.1142 19821.175 10887.4049 15771.6574 4749.0693 6818.0775 8567.3146 4015.7928 7716.0653 119225868 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12479.1194 114266.9614 18663.2074 73486.7856 6186.1592 3643.8309 10536.4308 6920.1032 7307.0596 4163.5712 126720.9702 6629.2395 6809.6873 4295.2407 9575.5796 9575.5796 4687.3141 15194.3344 10253.6911 6980.4712 9678.5797 5282.9699 6635.4702 6504.4093 8382.4834 4840.6503 18090.8914 5236.5325 11347.9359 3916.0803 5048.9582 7734.0007 3782.5704 7474.1621 226317421 ppk Phosphorus Polyphosphate synthesis NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 556105.3435 8689.8656 2600.8506 67948.4446 6102.1455 1823.6631 9849.7509 196232901 cysJ Sulfur Reduction NA Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 6681.0163 6625.7977 5287.4367 13418.3396 4698.6662 2535.5291 4733.5537 4581.8664 142816.1292 7697.7134 5513.8773 7435.9467 13410.1572 13410.1572 19609.9818 8326.3704 8004.5622 3701.8076 14191.2978 4340.2489 4905.606 9158.4041 3339.2314 20419.2006 4482.3359 9903.6609 3437.4931 5875.7918 6708.5702 3350.3116 7356.6351 300545347 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 6921.9739 14973.5542 9872.3737 6860.0252 5451.8197 9636.1186 9636.1186 9521.032 12815.5244 4306.9897 2623.5208 13124.2777 9487.3232 6094.7475 13676.407 2071.3379 4265.6224 3546.736 65656.5035 293604339 FBPase Carbon Cycling Carbon fixation Calvin cycle Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 11718.2415 34282.5442 6411.1304 9070.8723 4761.4588 7953.8243 2204.0765 10739.0321 10293.1168 11528.6715 158882.5177 28040.6952 16950.6565 8167.1034 124395.0245 124395.0245 6939.6549 13426.8621 8572.9985 20820.2132 4411.6403 7899.902 7029.9229 19556.4877 12625.2852 4874.8022 27453.3052 7810.4738 12235.8947 5225.0141 7242.198 11676.5092 4617.0161 8694.9293 319943585 cda Carbon Cycling Carbon degradation Starch Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 27211.3496 5509.4185 6653.059 9133.8564 3433.8532 32452.352 6637.9483 7334.6163 9202.5844 27009.208 161969.6038 11389.4193 13839.8834 17064.1897 9960.097 9960.097 29438.0542 14855.608 13839.2985 142957.5246 19782.9238 13642.0404 6151.7006 7196.8924 6765.4417 11735.0332 22415.339 13141.1903 13711.956 3711.3391 14038.771 14184.5788 7215.3892 16890.7563 118424374 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7557.2887 6735.896 10624.7179 5689.7066 7079.1726 6307.3643 2757.8052 6962.9124 9814.2871 5337.1071 193039.5619 7212.9263 7153.4466 4903.31 4213.9576 4213.9576 16898.8313 14745.8602 6681.7293 12943.7256 9802.6189 5523.4631 5324.2714 10877.4729 10562.145 4932.934 17630.3051 13558.9111 12635.8744 3625.457 9043.9362 15121.8986 6193.7334 1113123 chitinase Carbon Cycling Carbon degradation Chitin Ewingella americana superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Ewingella; 18577.4348 7904.7717 29354.5514 40273.2066 10290.2701 12922.7233 12186.7364 47193.2821 8695.4703 19792.0205 10810.5866 1748865.561 17633.8522 25781.8636 18348.7069 9479.5348 9479.5348 9635.6929 24180.6632 21799.7159 15164.9951 23690.1213 15295.5419 10346.5712 12331.3951 36878.8465 10026.9539 332444.5666 22826.8866 24779.2752 29817.102 13944.0484 9689.0713 11381.6839 15111.9058 114197670 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9298.62725 19073.7968 12413.8567 16278.5222 7771.2693 34538.403 8477.3125 3563.4406 17045.0211 16603.9484 4977.4918 299811.5076 12610.3313 7758.2628 11634.40295 7669.2412 7669.2412 16725.3559 11097.659 35203.7211 10730.0356 11866.3453 18538.5106 11051.3661 6983.0655 12112.3071 7760.7229 22573.4175 9412.72815 17245.4713 14271.6112 12790.5786 11892.9279 5837.2483 69962.4134 148498945 nitrilase Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 98011.338 2262238.7745 50186.6335 1245932.163 84125.66 8429.6197 17952.8756 118243.1547 39830.3333 42472.5969 135054.4709 169745.4137 1165304.3475 99764.8265 49695.5668 316290.2654 61319.2705 61319.2705 254752.9057 682937.8877 37115.2908 42982.8494 119726.0525 111393.8896 157246.1501 66226.4254 110134.2717 80286.976 247093.2589 65958.3892 132705.7362 51785.1195 78092.4687 262051.1598 55084.5805 1632243.6392 22450003 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18645.9697 225609.0759 96009.8794 539090.6127 13169.7182 8259.0182 19055.6934 16832.1718 69385.7055 6461.367 35836.7566 16336.4001 184601.0033 11738.3367 69047.9885 12249.1225 16477.6579 16477.6579 30192.9772 23930.9435 18338.2786 11194.9893 31950.9511 20642.343 63575.1213 10336.7624 13861.9532 6613.0478 34052.0646 11289.1627 26344.0148 9887.0603 11110.5823 9754.3214 10955.5048 16909.2045 291301403 arsc Metal Homeostasis Arsenic Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 26550.3037 493753.2999 10398.7392 26925.1419 13438.4645 26375.5831 15232.9728 5728.0013 11540.3507 21696.2774 7713.7554 174366.887 23815.2453 28575.9308 16974.5139 17957.8211 17957.8211 24584.7248 19547.8016 12553.222 9559.5283 17400.236 10120.1488 6038.9191 11227.4247 19349.2113 7159.6152 26712.9758 15494.9023 21091.6867 7301.717 12731.627 9354.5961 6618.1227 12550.635 226347232 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5417.0578 852802.2309 11889.2931 7551.0177 9265.3556 2697.2847 6499.2745 6381.1898 5175.3612 159406.2876 29980.0904 11365.0619 5347.997 65194.2877 65194.2877 2932.2913 8002.1316 5967.5555 4958.1656 11948.0284 4313.3546 4045.4602 3812.1939 5864.4979 7302.6092 20426.3784 6575.7104 18126.0314 3476.258 4878.0483 4255.8277 4303.1758 10119.0636 209401654 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 198540.2488 83522.6132 176129.422 73863.2626 63395.806 952022.6832 95316.7201 107468.1062 111063.4449 117134.2816 653193.8682 128578.0038 3667277.3094 75326.7819 84726.9575 241297.9634 137074.6182 137074.6182 84514.8239 569280.5618 80591.1905 241950.1513 147452.6059 242463.7291 78369.523 91966.3288 95523.9273 142623.0429 333269.7874 85086.0009 121496.9175 55076.4145 95500.7804 153343.4943 122396.9656 108675.7303 387139490 urec Nitrogen Ammonification NA Corynebacterium pseudotuberculosis CIP 52.97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 7440.7361 5494.3992 7161.848 7053.5485 7217.4281 35163.3185 5020.3608 7206.6077 3871.6025 88215.9408 10463.2738 4911.4493 2285.2961 2285.2961 3296.1875 7150.8495 6939.6203 4043.3981 7179.0252 8020.9707 2988.633 3676.8837 14486.8175 3988.5596 14103.0696 14482.1392 15671.8202 5302.6922 4035.7351 15102.4566 7450.4147 13183.5758 332377164 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 11223.5961 5564.8324 13152.6274 19865.1287 45486.3898 94300.3924 97407.0077 10226.2075 50201.0715 39102.4745 37751.9214 496825.763 838064.5108 85608.9627 39289.7172 107394.324 107394.324 27099.0143 589032.755 16871.5052 5193.6055 40963.7817 5645.9309 9747.7816 28306.0172 61995.0315 56210.5622 122539.3048 46667.8186 96823.5813 29296.0325 84540.4921 40805.9457 47320.8374 11452.9261 255264519 ppk Phosphorus Polyphosphate synthesis NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 11964.5145 14677.9021 6659.4825 6844.2826 11943.3683 7557.1903 15865.0308 78081.6506 14345.802 8398.3459 11359.0614 16401.2776 16401.2776 4577.3236 24502.1895 9398.9827 10287.7327 32673.895 5935.1999 11464.9005 4162.0006 33958.9911 7384.444 49232.4987 23222.996 13966.807 5143.9151 32355.069 25523.8922 5310.646 9656.0346 225874982 ppx Phosphorus Polyphosphate degradation NA Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 8549.328 9619.4875 21443.1356 8354.515 5138.0074 15266.6903 5237.6845 7659.4907 205327.3365 7132.0633 5836.167 10563.8704 16692.7584 16692.7584 3717.0302 7158.9802 9171.3543 2541.3809 30980.255 4881.5501 4076.9652 10398.7595 10498.2559 6170.7181 13834.0881 7280.8012 5832.7756 11189.5598 17623.1385 326946183 nosz Nitrogen Denitrification NA Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 5090.85 2850.4588 12727.6168 296128949 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 140185.6652 17618.2082 20616.4193 24463.4246 35698.232 10238.0437 27269.505 17774.2674 32307.1321 23511.9619 18804.1829 190631.2389 24568.9253 13718.7434 30361.3416 153453.1363 153453.1363 12298.685 34422.9666 31954.9157 206170.9245 38636.2403 38762.4457 13145.2857 23171.3461 31562.227 82889.2618 109622.4202 74535.489 34131.9064 27520.6288 38666.1439 31271.1899 14035.7701 39350.0913 303323425 amyA Carbon Cycling Carbon degradation Starch Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 12450.6752 7097.7128 7739.082 13827.894 7722.7746 9684.0916 7618.458 12074.9593 8999.2543 4759.9653 232650.5636 11145.4706 11017.4056 7067.7405 4895.5962 4895.5962 6193.1997 21325.0724 13418.7343 14449.7941 10214.9505 28994.2544 7749.0309 11549.0899 16488.5605 7497.9756 26746.7411 11617.4385 15803.1417 8619.634 16371.065 11163.3168 9771.0099 16977.8164 381374196 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 8998.6076 1103257.0591 18643.8103 7178.8168 5974.9047 9493.1088 9033.8314 9509.2411 11836.5996 9014.5505 461851.4872 13572.6074 25328.1964 10160.1436 10509.0248 10509.0248 16934.8714 38683.0268 13413.5731 9518.3099 21976.3437 7455.4317 6178.2239 7659.7364 19621.1152 7883.5338 30173.6384 17886.9649 20218.4779 13799.0337 11938.1242 20371.433 11082.6771 83287.7564 34392410 one_ring_23diox Organic Remediation Aromatics Other aromatics Frateuria sp. ANA-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria; 10956.47245 15076.5664 12471.862 13411.5183 12881.3995 9639.9476 12454.22715 7221.7619 9691.29995 12138.82995 8496.84836667 16396.25445 10508.76905 12852.2512 13068.466 13068.466 8054.4118 17775.2325 13219.5352 13337.23805 7077.90805 5342.66165 15148.303 6870.5927 23903.3678 11415.33 16991.90915 7401.4975 8791.82805 11151.8016 9363.1293 18333.24855 56460869 arylest Organic Remediation Aromatics Other aromatics Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 4911.2726 2763.5175 6538.8207 8451.2816 4323.4559 5819.0685 5910.7084 6023.923 5055.0228 7477.6567 25082.7563 5809.2407 8660.2607 3035.652 227537816 urec Nitrogen Ammonification NA Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 4541.0461 17184.3555 2913.1397 6108.5634 2349.0677 3906.3941 13344.3385 3767.2742 94470993 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4126.1934 3209.2945 9682.147 3572.2223 5184.3457 2802.9789 9973.4431 5146.6928 2758.7982 3700.4768 5847.3388 261282936 heparinase Carbon Cycling Carbon degradation Heparin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6493.4453 19326.9958 15226.8137 33481.176 33574.4379 125615.4286 35102.7217 35102.7217 375080576 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 20438.4685 13879.9653 11542.9211 23052.1704 14651.3863 16744.0409 12558.4615 12231.9643 20997.3196 17816.8594 8793.1924 368590.1272 17520.6828 14365.8013 13002.9354 9724.7778 9724.7778 13481.3311 32021.8001 20001.2676 16321.9534 21170.0685 22826.1215 10250.7871 12776.8434 21810.8257 13173.4936 34988.9396 20030.9177 26946.5616 7142.5249 14040.0506 16556.9513 11369.3768 30091.6011 68345325 cysI Sulfur Other NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 16206.1235 6750.6863 7682.3565 5268.8101 8490.1434 22840.155 42139.6272 13779.0756 26365.1624 18118.8922 913277.3474 16055.3868 28043.3385 14238.5287 14040.2983 14040.2983 15188.2836 80985.0322 13145.0335 19075.6311 27568.0557 11188.3583 9641.1426 9722.8138 15044.4586 19684.4142 39105.2558 12340.2086 24047.3828 14245.9122 13467.7669 11180.8411 7238.354 23989.4367 254514620 B_lactamase_A Virulence Antibiotic resistance Degradation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4403.468 2248.9373 84284.5623 2291.3556 91571.4072 3412.8066 6414.1376 4437.8852 4946.5739 8441.6928 11657.3815 6288.9264 2612.4995 3083.0495 2253.9901 5678.6639 119537012 badh Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 16429.7893 5354.981 9989.0272 26434.5445 8654.0617 8644.8696 10092.2759 9800.9569 8060.1481 10253.0041 4191.8422 143783.6668 12832.5347 12744.1594 11889.2297 5623.2879 5623.2879 7507.6261 13523.455 9531.9662 18998.1146 12316.1772 13820.3801 5541.5781 5073.1376 12871.7518 6817.9116 25352.2934 10924.9918 18379.9119 8766.8705 7799.3655 11181.3425 6257.1003 21856.5189 164606904 phdi Organic Remediation Aromatics Polycyclic aromatics Arthrobacter phenanthrenovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 43309.0375 6970.0764 19865.1465 72833.644 5507.4467 48164.1537 5718.204 11016.9577 22491.7793 11087.2771 98657.0562 15008.4849 38366.3696 15418.6611 23126.6744 23126.6744 9370.2277 23424.1827 13302.551 13298.0563 213983.6928 16678.9511 17526.6871 14145.8686 12873.8783 15016.6851 37204.0609 14278.1095 15997.1626 7032.1666 15551.0666 15676.6068 11842.23 16635.3621 313104764 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 59325.6061 13166.8157 28067.1245 28921.1747 19545.5286 15808.8032 34037.2659 28108.3409 38604.5328 34661.7868 79203.6484 24061.8185 1287590.2928 62653.9438 36105.9345 77276.6555 187594.7402 187594.7402 30382.1119 52778.8885 54589.7059 55272.2674 59200.2488 62647.5678 19651.9582 43897.2977 51144.4866 34765.0814 72359.3112 54534.4773 48557.1545 27154.8092 49016.926 59535.712 45194.7362 99555.3824 91777976 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6702.465 2034.9372 2908.2408 5027.2651 7693.0749 4069.9061 7869.2926 4491.1395 2443.503 5940.6172 2014.9152 13953.7735 3869.6881 8940.6885 3308.4387 3232.0706 3268.4458 2407.0833 146761192 fcbb Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. CBS3 superkingdom:Bacteria;phylum:Proteobacteria; 25821.3604 38255.1404 17166.0251 34565.2511 7966.0507 45130.061 82131.4978 25362.2652 26683.6072 34963.8408 23678.0591 547285.9452 27095.4085 120143.3764 23630.5431 28250.205 28250.205 20945.3777 42454.7135 32672.7724 54810.5669 42818.0777 90048.7654 13400.7369 22569.2602 49121.6232 24684.7279 87774.7134 63464.7341 69877.7436 14635.0757 26372.1114 38417.1119 15201.2739 315553.5178 374998812 exaa(moxf) Organic Remediation Chlorinated solvents NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 6757.1971 10245.9729 2325.0568 3302.216 4171.2313 5945.2366 17597.0274 3307.8675 93087.5861 10535.6072 6175.5541 4359.9629 5904.0714 5904.0714 3815.7971 11721.7809 7535.4382 7742.2012 8404.6132 10576.3738 3682.7229 3642.7164 7476.7935 3051.2912 18395.7894 5221.3105 8744.8216 3256.3146 5506.0467 7181.4389 4062.5235 6584.0082 146282308 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 67015.5939 221852.3327 30036.9983 82900.8398 38531.3277 74169.011 43738.1551 30998.1248 36813.6974 43637.7749 29430.7938 860741.4087 73252.4839 70614.8949 59135.9249 59685.3905 59685.3905 16554.8561 41139.9146 26441.7417 47098.1101 51052.5532 52302.9534 23161.6462 26790.4928 47569.5466 21158.4292 68627.2565 51746.323 53417.7663 21818.1403 33036.3225 25013.2231 25594.9909 41330.2673 255502879 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 112146.5604 22551.5958 23878.2216 54187.3365 112814.4535 9309.0231 90881.0972 361523.6645 86685.5343 134879.8229 64184.3948 60586.7194 1360564.2197 76284.2278 62893.6788 69138.3945 123626.6488 123626.6488 52496.1658 93240.2928 36676.4024 91377.588 73463.3597 276217.2588 37495.688 33334.0798 62204.4179 99242.0186 201809.7996 51998.2014 115467.244 32173.8719 44458.9889 58051.9423 54506.7431 108653.4234 182676943 tktA Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 8018.6104 5287.3462 12142.7987 6577.9031 3516.018 2997.8851 117971.2877 11043.2624 5471.2133 150191.6332 10270.8335 7703.8398 9625.7332 5923.4651 5923.4651 67437.3894 13945.4608 7386.8778 7604.5843 17570.2261 8374.1836 3681.317 6271.5316 12499.0668 3726.7313 16268.7656 7725.6648 14782.0129 4772.5622 8088.0624 6359.9521 72474.3278 11193.5882 15966647 xyla Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 5269.4201 13994.5578 4738.4954 4405.3878 3155.1834 3915.3585 5165.7922 2287.2446 2287.2446 4548.4532 6859.1672 3859.4277 5710.742 6399.3674 4629.228 114702.3413 2702.9427 6936.1375 2067.2126 8383.9859 5364.3292 7941.9269 1890.4944 3042.1406 4376.3196 2516.5353 210631468 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 73105.5856 15858.0424 22868.304 3690.8299 4574.1042 50535.0177 5366.7072 147766.6037 8933.7851 231524.2269 12891.0321 7736.7443 8681.6838 9388.9623 9388.9623 4706.8187 10328.236 5968.373 10852.9275 10649.0816 377221.637 11103.5964 16697.4142 14130.7166 12482.5962 26397.945 11880.3593 25908.4719 4759.4367 20859.1358 5589.5877 8582.2088 26284.4694 1914799 cellobiase Carbon Cycling Carbon degradation Cellulose Thermococcus sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 23043.5845 13465.3241 12296.3295 26582.9397 22668.4139 11817.5245 22286.263 38458.35 22007.4895 17261.8856 16002.8281 10517.5349 459762.718 17106.8796 19782.8902 16352.6622 9723.6792 9723.6792 10292.7758 20699.3764 15245.8428 26581.6784 19567.3564 22959.1142 8558.0077 10754.758 21400.6329 8124.1131 33389.3018 21010.126 22187.7818 9751.6087 17673.9934 25800.2907 9436.9097 22452.8083 302470916 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 55420.2621 25483.2458 19899.229 1884.7919 84279.034 27437.2693 18299.9416 31970.8342 66768.4381 95589.3736 10429.2415 11574.5275 27285.91 7151.7507 7151.7507 5850.4779 10349.508 13039.5788 8364.8011 11495.0225 4400.9952 8812.6102 9101.3499 10645.9009 44306.358 23849.0214 23478.6532 14998.8308 56046.3084 14522.8137 8216.6504 9262.0204 7842.2968 294053595 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 7148.0958 55978127 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 42217.4246 32848.816 25679.6452 45610.1347 9262.3892 23319.3718 288544.8441 21501.5471 29878.5253 42182.4532 33127.975 852295.6721 28118.1124 28014.4088 38815.4035 32079.7171 32079.7171 27629.2661 61241.5249 62262.7989 33468.9496 228853.531 349445.0506 55430.823 23064.5562 46315.6136 64448.0352 81493.7013 28109.461 48850.5565 50110.0812 36635.472 30384.6731 118301.1879 90058.3733 259559730 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. DSM 3803 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 51711.0015 18729.8388 14623.9384 7638.8815 631161.2367 10222.9084 19280.547 49089.2206 627289.4548 58033.9042 23883.1155 548887.8836 36136.3368 38977.9732 47907.9362 33335.9276 33335.9276 19721.3719 31444.8745 17364.9834 45087.3923 96783.6029 26411.1262 20206.6147 14864.4081 24135.6784 25687.7826 40782.9067 13925.8368 77299.7074 12164.5269 29006.4528 53872.3937 12911.3386 24264.3424 226242593 badh Organic Remediation Aromatics Other aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5955.6762 3999.2221 8208.366 3348.4267 4323.3926 12015.0624 3630.5689 3245.1757 60476239 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 14428.88 9208.0394 7318.7916 13470.9224 6306.2288 11076.518 9697.9703 10196.0965 8382.5922 12541.3251 11029.9613 152646.8484 17430.8945 82526.0331 10205.9931 17838.0766 17838.0766 8172.3036 23137.1841 11413.6993 19702.8894 15997.5302 14582.14 11443.1905 7777.3887 16128.7961 8160.1657 25017.7996 9766.8547 17254.0568 9749.4885 8430.8837 13485.8243 21716.3688 13927.6178 217415750 pula Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 12264.6459 8813.929 40279.1365 37168.5015 11822.8364 17500.0282 12362.5424 11665.827 14702.2325 10540.8034 10205.5033 207471.3304 16538.6306 23234.772 21777.7941 9900.2929 9900.2929 5621.0346 14706.4454 13787.3617 29651.2421 9830.4748 14768.3827 13012.9702 10246.978 16381.0652 6096.8437 26126.3646 9446.3439 19235.4487 5038.6007 11550.9975 15335.1397 7699.8531 8892.0173 11322380 Cl_peroxidase_fungi Organic Remediation Aromatics Other aromatics Leptoxyphium fumago superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Capnodiaceae;genus:Leptoxyphium; 5549.3529 9356.9881 3316.579 4754.4003 120204.3753 5491.5885 105558.4893 5673.3751 4863.9863 3551.1093 7376.6778 6985.0352 5703.2558 5011.3629 3091.3544 3493.9278 6580.2706 3755.8927 7650.1885 8462.3831 6166.3469 4052.8133 5392.5427 2579.8539 4479.1846 255707282 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22837.7442 5788.9234 8426.86 8116.6542 17809.2455 13666.379 9826.0347 10099.4967 8680.1232 15595.4708 297390.1086 10440.7922 57436.8126 12356.6785 5446.1921 5446.1921 3573.7707 43598.716 13560.4214 12071.5462 24106.9154 1254255.7994 18606.0991 10660.0183 15611.4252 8243.648 30203.6224 20702.719 12780.8406 7241.2393 9891.8044 10502.3132 7080.1607 10025.7256 296020976 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 32644.2921 25545.4983 25499.2261 48911.8343 21907.0785 41666.1688 27605.8053 11019.8048 24307.0687 64971.3325 13955.7813 611312.9444 30037.0329 43520.3708 30063.453 24468.8359 24468.8359 29626.0981 82158.5075 44850.746 38894.7069 29962.2836 24339.0293 21597.3144 26080.6907 42637.983 173945.4549 64205.3654 69664.0698 76200.8456 14591.4495 31133.1444 25024.1305 22099.7617 20179.979 255106777 dmdA Sulfur DMSP degradation NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 27898.8664 43099.8452 18222.5567 24580.8212 9667.7705 9496.2924 16829.305 21647.0884 34151.6932 138613.5017 19390.9514 30528.9468 46819.8345 26411.0703 26411.0703 6999.0714 105996.991 9933.4159 43766.1956 166317.9515 14711.3385 14472.9811 19590.8974 85267.1126 39839.9885 75576.7149 54981.4585 42630.8866 98636.1339 33917.7737 34712.5348 111014.1912 36689.4439 50880306 glx Carbon Cycling Carbon degradation Lignin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 45928.2512 231024.434 23936.1165 8144.2837 7833.8584 118275.123 28021.7311 19852.9081 19286.2979 18999.2964 33240.0727 358809.4283 17308.4258 11092.8506 20456.6549 15464.1029 15464.1029 10979.0259 26296.129 20163.2389 39949.097 18679.9551 11372.0262 13553.1203 10502.8214 12873.7259 25365.7307 37270.926 14577.0226 20333.1386 13022.9654 26542.354 18487.8705 11705.0867 52603.787 170935000 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 12550.0487 11829.2408 12774.6616 11432.3337 7486.6734 8313.2094 5455.1806 6824.6968 99296.3349 4008.7576 10856.525 7134.5611 7134.5611 10554.1612 11640.478 11009.4804 5018.8731 10134.1881 5067.815 5344.9283 7558.4866 5448.3386 14600.4064 23251.6366 7561.1417 21836.2367 5366.1252 10636.6062 6244.1627 5440.8275 13185.9522 117164684 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 8581.1569 9017.6066 96334.2589 3702.4802 8237.3893 7140.8499 7429.5534 5422.7477 4930.6522 4801.0338 4801.0338 2995.3397 8925.7439 8257.749 14579.0394 6099.0993 3627.6497 5062.5366 31960.5725 6739.6865 11649.7264 15067.9255 13067.6728 3947.055 6144.457 3972.7295 3416.3454 13447.6933 94983181 silicon_transporter Metal Homeostasis Silicon Transport NA 7664.931 10990.3775 11917.0686 10839.8528 5622.8572 14258.8457 6419.8989 12783.9375 5353.299 11451.0273 5815.8619 90994.1832 7628.6646 6165.9853 8722.1189 4874.3907 4874.3907 6018.1382 18611.6214 7861.6332 9766.1703 9727.1146 10114.566 3158.9114 5312.2062 11121.0506 6742.0406 34578.6108 32208.7995 11811.1799 6830.5692 8509.8794 10866.0916 7996.9576 9092.7752 257053462 mannanase Carbon Cycling Carbon degradation Hemicellulose Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 5840.8816 10866.2513 17061.9442 4968.3668 2761.4569 4852.6019 30905.0357 22034.472 38765.1117 8269.692 118125.7451 9905.014 9479.9423 10512.0294 11536.016 11536.016 13611.2434 3769.0662 6106.0995 7426.1249 3920.1568 7595.2112 16493.7642 12457.4784 10532.3225 16752.9696 8582.8567 3248.8845 11047.9407 9724.5225 5813.7168 7038.6098 229467012 phytase Phosphorus Phytic acid hydrolysis NA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Hamiltonella;species:Candidatus Hamiltonella defensa; 5942.2647 5356.5369 11504.9919 4781.8569 3890.9685 2647.2139 3700.4431 3477.077 2714.9563 123882.7345 4536.1437 4135.8077 2249.2058 2249.2058 3468.4066 8555.9585 7079.6623 5288.9047 7475.5234 6967.1161 2118.5666 2409.9091 6495.7823 3296.3347 11005.7436 6855.1477 2503.536 4442.5119 5307.195 2415.862 10569.2646 255593455 b_lactamase Virulence Antibiotic resistance Degradation Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 17930.3514 13915.3301 12248.4419 10083.1033 17150.2596 2859.1402 4477.7968 32151.4467 10374.0899 81836.3521 8075.9201 7802.5177 5489.7539 5459.3716 5459.3716 8177.3923 8337.8989 3450.9637 18389.9856 332356.7009 4396.4323 5266.7755 13756.3327 9793.1372 21045.8742 7578.2755 8707.4411 5456.5465 6872.259 10693.5594 17590.7037 6040.1058 211905425 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8854.2873 8349.3987 10995.5185 7576.9087 7622.6315 4114.8806 4170.1029 6829.7253 11300.8781 88056.164 9911.9012 13202.9281 4632.6564 26977.0351 26977.0351 5986.1489 14731.5547 8863.3761 6813.2629 26323.2347 10457.9461 8083.5673 17863.9248 11092.9322 39933.6105 20648.8541 7428.1327 13483.9652 5294.1428 11796.2649 12513.3201 5495.8995 9233.8804 46487401 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4529.0335 4190.6292 303249214 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 7361.8481 12312.1219 3758.7355 3758.7355 4739.5299 8220.4045 6644.4196 4216.3446 5852.2062 8490.8417 2551.615 7366.3558 6103.7975 3488.9963 5532.7829 9073.0168 6955.993 164455912 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 76629.6468 17178.8836 32576.8498 65046.2122 8276.2467 34420.9087 19754.07 53051.4764 26522.859 34224.2875 29227.2007 1098996.437 32561.4932 45010.5626 18660.8215 25146.0631 25146.0631 14404.0387 56921.7988 19981.6598 61477.9438 48633.8535 23684.9366 16538.1226 17825.3295 34366.6381 26671.5948 73275.061 51633.5277 42734.2383 23717.5109 25567.2075 35253.8559 20625.5858 55604.7823 261345041 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 9558.949 17402.6055 6797.3024 51748.343 5111.633 9520.6119 6793.5206 3807.104 272976.4733 7634.0379 8632.5413 7146.9122 5958.5762 5958.5762 6310.7375 16708.4963 12292.342 7709.8872 18500.8451 10464.1471 5852.7567 11778.7077 16448.6424 4133.7092 23158.6362 13773.9568 13414.7734 5713.7063 6948.9451 10398.0572 5132.1893 13662.8754 77165857 ppx Phosphorus Polyphosphate degradation NA Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 6499.1404 29566.6298 4988.338 6901.9649 3597.8112 6497.0717 16657.6115 3820.2889 135577.4174 6592.2831 7394.2753 7214.622 24714.1148 24714.1148 5207.2641 20121.7827 9079.5182 5222.6755 10689.58 5509.4206 5952.9435 5386.4046 15287.0619 6156.5421 18213.0185 9416.9775 11234.7653 4552.4817 6787.1022 6203.0656 3582.8321 12607.0202 220933468 FBPase Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 4829.605 367490.9614 4848.3434 23412.0017 5468.4717 3624.3436 12209.4288 34186.847 2516.1839 199957.2781 3770.4727 5113.821 14054.598 6469.5115 6469.5115 4284.2772 24051.3766 2184.0209 3798.058 4938.7666 2814.7063 4044.5804 2449.797 2885.819 3209.8232 22632.9644 178468707 vgb Virulence Antibiotic resistance Degradation Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 68220.1942 221693.7431 45990.7082 30369.0106 17834.9174 541454.9544 19509.4438 50560.2311 24209.4049 95917.727 25116.069 526113.6233 63669.7516 33630.0429 43419.8486 16851.5399 16851.5399 18283.459 48735.0563 20615.0044 46411.7137 22237.534 58259.6867 23261.3581 22154.1713 47374.573 20480.9119 62246.6294 26291.2206 39022.7952 12384.051 59287.3119 35480.4284 22135.4681 52176.5272 121611522 tfth Organic Remediation Aromatics Chlorinated aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 40800.11245 11764.7512 19598.5297 358106.3942 49042.26375 10664.8657 37890.92175 25815.07125 10416.62605 26152.1472 29440.82865 24541.51515 1306586.18225 35298.9412 63500.57495 32610.42355 84760.4831 84760.4831 22654.68415 369736.36255 28321.93605 32572.4505 34864.67145 45446.745 14995.1735 25151.5604 44497.2812 19759.76785 133692.5003 50632.47285 58139.8003 18213.00505 21481.7349 32473.11045 14800.98835 48613.2041 373103032 TIM Carbon Cycling Carbon fixation Calvin cycle Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 70518.1509 12347.6638 16181.5015 674998.9181 25321.6564 18226.7599 24451.0759 11876.557 26699.8881 32969.1501 317026.4475 18563.1853 31564.9645 26530.1457 35779.5714 35779.5714 22300.7124 48424.0549 20221.9499 20757.084 29416.3151 20704.4614 64466.5515 46789.4934 25211.2394 14851.4759 46080.3408 29688.072 31355.89 41065.4853 26174.3991 48873.6498 17449.107 14510.3245 359252252 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 4856.192 6049.6977 3326.962 11140.8832 7391.3069 5340.504 8998.853 2984.978 2984.978 3122.42 8163.055 5346.8284 8802.066 3687.4537 3670.8117 9922.7811 10733.7279 6439.6423 3369.8641 4049.6626 14174.1552 6174.5787 119391529 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10804.1474 21694.2336 11915.0663 3952.455 1971.3812 5029.9066 6550.786 46237.6965 178809.9864 8484.1831 8814.5004 4071.4024 2563.5893 2563.5893 3554.4293 23544.7528 8289.038 557484.3082 9594.6953 7235.7144 3657.0673 7786.114 10656.0545 4551.1918 16149.7408 9561.1514 13344.9922 2796.4232 6052.744 5630.2824 3587.6225 10807.1672 70993144 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 393956.7298 112963.2327 32475.9194 27546.4941 23644.5503 18389.2803 54725.9751 98503.0694 80295.3702 58412.8859 63427.0887 34785.6949 1442213.324 79194.1168 224658.3881 823025.5697 72300.1098 72300.1098 34666.0144 95449.007 61041.6521 571008.3332 134979.5037 93448.0376 34251.9639 49993.8014 71554.3637 46974.9197 147632.4221 84953.6695 73725.2575 35667.9717 47270.3281 62884.5724 35579.6012 161311.0167 304393540 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 9232.1039 13159.9171 9065.366 4990.3103 19992.7903 4305.5723 16852.5166 10834.197 16967.4627 188226.8278 40132.5797 23883.8018 57688.4451 5699.6893 5699.6893 3180.0881 17571.8764 6445.2817 10333.6035 5243.692 6303.627 9415.1671 13676.6257 12660.3167 26224.5349 16944.8914 22766.3989 3820.311 7695.9273 12434.4437 6366.3399 8670.9373 161394700 urec Nitrogen Ammonification NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6025.4051 4615.7024 3678.3222 2471.3179 3608.5053 5365.6187 5856.4384 101699.0575 4061.8009 5528.1042 4458.6962 3923.1119 3923.1119 8813.057 4060.2377 4491.344 4292.8166 2490.1286 2270.2571 6949.0257 8342.6018 7422.8694 6623.8828 2331.246 4542.7725 5258.2596 386813154 glucoamylase Carbon Cycling Carbon degradation Starch planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 7971.2228 7923.6622 7750.3579 7817.0034 8071.3318 5345.2043 3419.615 10492.6027 9217.6544 4196.6543 194358.753 10944.421 7100.2295 4192.3751 3842.2179 3842.2179 7189.9026 14064.8533 10724.9798 10788.4425 19151.2776 19840.8583 5774.6992 5662.9386 13029.7058 3647.5039 17090.8377 6411.2431 13485.5792 4889.8332 8184.9887 7623.7929 4403.5619 17911.0639 74038350 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5975.956 7087.5975 2065.3377 6837.2267 4060.5726 26841.8612 5777.4606 4923.2924 232331.0642 10105.724 6162.8773 3794.1713 3794.1713 4401.6127 7307.1389 23063.3083 5277.0735 5564.135 4449.1979 4203.9609 12475.1414 10821.7228 15118.3451 10817.2762 10985.0142 3168.6551 5882.9793 4354.9225 7389.4581 11189.3736 377530797 badh Organic Remediation Aromatics Other aromatics Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 6202.8627 4064.3143 18876.4743 2409.0843 3019.3725 6417.5898 17269.7645 6025.3986 73084.9272 6322.7326 6613.2443 13847.05 3501.1011 3501.1011 7264.8529 20009.3537 7573.4395 8485.1072 7584.1399 6683.1854 4083.7605 5112.3074 8448.3685 5406.1889 19092.561 6295.6343 11366.96 4116.263 8644.8444 5267.8196 4951.2836 9475.678 335343918 cda Carbon Cycling Carbon degradation Starch Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 9633.3411 7037.6256 8169.9277 6422.7593 6106.47 3721.1101 8097.7313 8410.1677 4460.6771 192346.9187 9269.8588 6268.1298 4997.4883 3527.7905 3527.7905 7188.7121 12043.7336 7973.627 9448.9443 8253.6943 8228.5673 5978.2773 3382.2245 9819.3638 5455.9685 19260.1066 6706.0796 10115.3933 3803.8246 5321.2114 7964.159 4669.1798 14127.127 302506697 p450aro Organic Remediation Aromatics polycyclic aromatics Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 10074.5882 10474.8571 8440.4814 13493.68455 6488.14715 102139.57095 2720.3405 11093.8617 10001.125 10657.16055 250546.3134 11518.13225 13212.4654 20248.1274 20248.1274 17233.79445 6631.19855 8195.64145 11791.229 25220.7369 8761.9385 21093.46445 20780.81945 6682.6941 14711.20535 290569959 xyla Carbon Cycling Carbon degradation Hemicellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 120635.4695 123192.2558 34672.7866 157135.9909 153172.217 15383.135 79708.7475 20412.1844 62689.6511 42695.1706 36647.2871 1653958.9757 82699.7208 77840.4603 190114.8245 94970.5603 94970.5603 82592.4723 80337.0573 31527.5639 17046.1279 42018.1007 58271.8866 24486.4253 49501.8853 106062.4906 45043.9215 77068.3027 76054.8395 97458.6499 52084.1984 62256.7041 47882.7166 41537.017 31224.1546 91688596 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9721.7098 8253.8682 8989.4396 5667.1679 3023.3004 3023.3004 33128.2773 4829.2165 11766.1628 3421.5978 9759.1163 2513.104 371590395 ppx Phosphorus Polyphosphate degradation NA Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 5623.1242 12510.929 2694.8669 5222.8705 3143.1853 111660.846 6873.4362 2214.9947 2214.9947 2827.3415 10505.1187 4017.2542 5606.9632 8022.6047 2664.4024 6262.1401 3410.5105 9383.4677 5528.0484 38418.336 2167.3774 4025.5225 3674.1754 3054.0813 211905607 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4848.6226 32625.6319 10535.5571 19716.6621 8608.7574 8276.6015 6731.2678 136566.2356 5129.7395 9790.1428 6759.2207 6996.8914 6996.8914 5001.2289 21458.6089 4687.8471 16190.3183 13146.5879 8004.0487 8169.6167 6385.9776 10683.5702 5934.5723 28339.1699 15580.2788 12173.0086 11678.7994 8201.4292 8043.9285 6983.3049 6471.4974 74038382 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20112.615 4890.8061 39337.7078 7887.3444 3923.5517 9472.2193 3469.0352 7178.3743 15394.838 105031.0841 6999.1642 31835.4676 5674.328 5674.328 39810.0719 13189.6775 5017.068 11343.0592 25098.791 12513.6004 3643.46 5623.3389 14797.628 12269.3198 5976.5915 8317.4215 6748.3465 10558.3725 6388.0102 12718.7711 32705.751 282165050 amyA Carbon Cycling Carbon degradation Starch Methanocella paludicola SANAE superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 5245.4304 6444.8528 5188.5056 8899.4482 6830.304 5966.8176 3289.4922 4079.812 8860.2306 7052.8586 81627.6734 11614.9615 7370.5406 5817.4462 7558.6456 7558.6456 5996.7236 14775.4053 8671.5731 8847.863 13426.0657 10589.2118 4958.8998 6053.9752 10904.0354 3920.3441 16799.4895 12617.9072 13019.2791 5597.4646 6739.105 13371.3873 8255.2479 39400.6008 221736658 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 316424.7372 29550.76 44211.5488 109056.3751 210913.8388 88454.3073 129073.1004 62805.078 125774.5739 33173.7473 113552.0093 48649.8099 1555543.7386 111504.1276 153840.9077 57297.9584 62928.6003 62928.6003 27427.6641 115332.0604 59873.0569 20221.688 46881.7254 47511.862 24438.3954 32184.2072 115840.5946 29912.7898 133302.9322 131190.3729 151888.8304 78896.6524 59540.0976 72131.4355 37617.6014 42151.3051 293326096 chitinase Carbon Cycling Carbon degradation Chitin Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 16581.4055 9621.0821 14263.9667 12589.2102 8402.7951 10147.2165 7308.8287 12889.9827 13335.6641 6407.2299 326333.6611 16528.4596 12822.2579 10136.1074 4841.0032 4841.0032 9494.1642 19604.2539 16813.3107 42803.0327 19689.7492 23065.2658 7897.0617 8389.5636 17726.2056 8588.8374 31730.3918 15814.0277 19366.3225 10150.3275 10752.1545 11102.1053 8785.9307 22438.1697 219863675 phytase Phosphorus Phytic acid hydrolysis NA Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3920.0833 8898.1469 59031.6011 8382.4112 2185.0153 4743.6392 4285.2469 21908.045 4731.7559 139485.5522 6832.4605 7088.8361 12488.3133 8344.4253 8344.4253 4289.8179 5764.3674 5495.1182 11244.8796 12059.7577 8441.3271 11850.659 3099.8449 4370.309 5823.3667 2082.6093 154302760 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 1037804.8558 30616.5934 82024.4816 378158.6898 271339.7903 175363.1788 72574.7114 753564.8636 71777.5314 106637.9182 150206.1551 173223.2237 3274756.9719 216825.1141 212596.6738 402285.5966 208944.6303 208944.6303 546508.4232 282310.7787 100036.508 162759.1191 105795.0794 95999.1872 119170.9297 180269.7458 320590.817 160202.7491 234029.318 209922.0648 87274.2737 231072.5187 126706.6023 478597.7581 117433.154 311907590 RgaE Carbon Cycling Carbon degradation Pectin Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 13129.4045 7060.9958 14642.911 21552.6364 7735.821 7281.748 4442.6091 10216.7242 11169.3714 6708.6146 207479.224 14238.0637 12449.8459 7061.0025 6408.7177 6408.7177 7751.2741 17521.324 10673.6361 11634.0663 14378.0916 16115.9946 7667.7906 6479.1853 18511.2324 4732.1586 26278.7455 13157.2281 16385.7612 5601.597 12845.0061 9010.3858 7599.8733 17693.5422 392845850 b_lactamase Virulence Antibiotic resistance Degradation Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7617.0917 157912458 pgk Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 12601.3953 49028.1774 6582.1611 27555.817 21684.5046 27882.9736 11528.3801 11281.7258 11619.6265 14941.677 194855.943 12842.2073 23423.6162 27431.2277 23313.0671 23313.0671 16601.3718 78225.8926 17442.2988 21969.4295 16938.6045 21487.4029 33740.6049 12196.1689 27405.5435 79408.1141 48901.5425 23363.3032 21425.8681 15932.4972 15686.8808 34434.1056 45246.2629 21837.026 329934359 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 199238.2443 33061.6138 8035.0187 10522.6854 47670.0254 16191.3292 5658.2763 15353.5887 14986.9467 61780.6424 457700.2727 24147.2145 18924.7542 45932.2138 24467.8256 24467.8256 56500.6569 46551.4449 22501.0153 24359.4883 23625.4365 18446.0199 20901.3437 13476.9678 20487.7052 14352.7713 39194.4687 38395.4059 24911.2999 4821.6074 29996.5165 31618.9379 18142.2238 45980.0409 304343016 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 32660.8629 14553.7937 24846.4796 48205.3936 40931.4912 24956.5099 31165.3688 31345.1799 18021.2252 26511.0252 33464.2172 13817.6361 684532.7234 47922.8186 29816.2528 20184.7648 19220.2787 19220.2787 26189.4098 40335.7842 35062.983 37572.2582 38986.4793 75834.175 18765.9973 15576.9097 43251.1611 23330.6364 65810.4374 47205.6919 41286.9677 22199.125 26374.2827 23725.6623 26776.881 57218.848 320103167 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 4386.2748 3740.5971 3077.521 132281.3717 3700.0356 3697.7625 10602.1841 6638.023 5267.1093 4208.938 4040.0215 2849.9033 6414.204 2930.9587 11239.3543 3526.6194 3463.6747 3375.799 3976.2993 1925.3877 4356.5809 90903283 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6929.8368 34131.0251 4051.669 7244.8818 28653.457 22413.0108 699260.6031 4026.3068 6942.0786 4915.4692 4915.4692 4029.037 40602.3865 3892.8083 13933.5324 5632.7694 4775.1357 7688.8543 7750.9486 7416.8453 8470.2767 14185.4464 9840.9325 12733.1739 4065.4066 5554.9714 9748.4012 2415.2326 337279007 fccab Sulfur Sulfide Oxidation NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 15278.3456 18300.8558 7619.9631 45301.8358 26921.4717 9084.1587 11557.3578 8798.5154 18511.626 7527.3706 44547.1392 10666.5202 172200.6224 12832.0782 20313.5326 19684.4581 15348.666 15348.666 8169.4107 16551.8024 10711.8613 38616.0548 13372.7918 7137.7963 7783.8445 13075.0886 12453.1276 6371.0141 18761.4439 13081.5849 19681.0934 8567.7401 12753.5227 23799.7881 5140.9222 12532.3006 295690109 rgl Carbon Cycling Carbon degradation Pectin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 126533.9075 177710.6706 4092.6425 32868.9264 6566.6471 20535.7882 11066.1369 14946.6657 99179.8791 25039.064 27105.9077 9792456.6205 167965.5016 30655.2363 52388.5361 26576.0629 26576.0629 21191.1143 27020.3103 70628.0853 37705.8371 17489.8518 32052.1729 12279.0538 93763.4094 44227.5799 29890.8089 44009.6509 20845.0368 31146.3813 211667.6392 35562.2225 94944.4425 12239.6053 7808.3403 157100694 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7730.1787 6831.7853 3338.9358 2963.8458 3453.7288 4545.1749 4277.8517 6639.3716 117709.6333 7779.748 5181.15 11001.6976 2864.1578 2864.1578 4441.8809 10305.3546 9337.1414 8117.5468 8210.727 7077.4505 3895.1769 3157.571 11431.3065 4648.7392 14545.311 7288.118 8882.9557 3471.0132 6688.1832 6321.9393 3481.9619 10350.5292 359819516 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7047.3255 6212.6641 4419.5971 68690.7968 68690.7968 5035.3141 6390.9416 5715.4016 7361.6559 7447.5498 3104.2869 4808.1397 8441.5056 2137.56 6445.2698 6867.8633 170751160 atzd Organic Remediation Herbicides related compound NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 5463.5572 8863.9876 8076.3277 3797.0529 5046.5989 2823.6659 92838.3877 4799.1866 22385.0739 21878.1136 13236.3082 13236.3082 11614.6895 11435.0918 35661.7731 9534.825 3064.9634 5903.6287 11503.0117 3001.5483 12197.7386 9711.5173 7735.2649 6904.4536 4218.4163 8590.7004 4659.38 159045225 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 116704.862 163470.5216 96159.8027 29050.6044 34877.2225 16283.9867 34821.2287 147892.2731 63526.5744 33154.1979 103107.1821 67572.7173 613589.4331 78288.3115 197873.8216 81359.1474 63329.9884 63329.9884 35898.2958 84533.6584 29572.1144 76495.0662 81208.5483 71264.4296 85266.4123 41546.4486 88656.8501 52219.0017 177180.0625 70285.7333 85400.6337 171141.8021 71996.3294 74755.299 34691.2647 88587.9566 333481962 urec Nitrogen Ammonification NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 17126.6455 12834.9327 26319.7604 27425.6917 4924.8618 17903.6569 13008.2157 15878.4467 14203.9606 18522.7255 11006.0037 344140.3065 17395.2113 19383.8658 22197.0009 11883.7935 11883.7935 13208.8329 28490.1765 15864.6824 20606.7643 20850.942 20030.4803 9082.3863 9197.3484 21498.6304 11797.4361 36780.7384 16431.2123 23102.7362 11808.5872 15250.6019 15414.6021 10269.1535 25484.9125 83953700 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 11761.8537 14418.0144 63866.4878 6081.8103 27447.955 55226.0152 6705.4771 4871.6371 137725.1857 8910.2648 8875.2639 8322.1928 8322.1928 2848.8732 9027.3112 3883.1326 4110.1124 7287.6539 4227.8212 4168.3828 6931.9806 7862.2114 23865.632 6817.4313 11023.17 8636.1944 4991.9089 5566.4634 6544.2902 32439.847 119488746 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 5321.1162 11535.1506 2288.5269 9568.1255 13202.0987 330688056 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 71777.4157 49980.2166 26695.2406 19560.4863 7679.9439 304238.2291 76166.0242 19558.2384 57265.1284 70113.2464 64074.8868 867516.7903 65242.5437 49527.2584 43613.4629 103661.3666 103661.3666 44982.6061 73591.4505 44905.1327 31198.6083 121799.3392 46289.7838 42052.1334 24635.6107 391065.278 58683.8762 126984.5946 74536.6531 71141.3452 29415.3987 54139.7687 50661.775 30817.3516 65149.4551 134075486 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 29717.1467 24081.2116 5252.8286 5941.4652 8277.2773 9176.7875 10472.4857 7776.8905 321820.178 57347.8387 18985.1337 14760.3155 18791.7932 18791.7932 4815.1003 40217.6047 12111.2827 4796.5711 8571.8804 6502.5983 17503.0444 9410.7813 14186.8219 46101.3946 65341.2633 17633.9787 24654.6625 16939.869 13007.7511 10774.3514 10075.3403 9240.6715 254454395 TIM Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 17464.7995 6228.1324 11133.8768 38635.3933 7554.8054 11722.5904 2900.1666 10556.0741 30341.9591 11402.9582 364972.5456 13760.4114 14542.7017 29729.5161 11040.8614 11040.8614 5672.5059 34840.1087 14166.0883 24020.7197 17116.225 10552.7205 4944.614 15097.0775 17382.2006 8957.1115 25630.2662 18978.2309 25215.7396 12226.5338 15279.824 20875.2631 5893.5669 8094.6875 145351467 nitrate_reductase Nitrogen N Assimilation NA Ostreococcus lucimarinus CCE9901 NA 31538.6954 11759.7052 8707.682 11718.8294 27236.321 9712.284 12990.5052 17836.5599 11175.4856 13168.1822 13194.7541 255238.8145 20462.973 12435.4255 60117.9486 21259.294 21259.294 18814.5102 657300.4079 19450.8726 47002.2307 34539.4907 25750.8603 20853.2138 15817.0362 15666.0841 11347.9782 67920.0347 34023.9988 22173.8542 14629.1647 22332.2454 45445.09 24182.2784 24934.0672 377660410 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 4616.5892 6273.0359 11221.2327 6604.9121 1868.0064 3445.1847 8469.4855 3173.6699 138277.9732 9930.6876 134619.3082 12657.7344 7374.2535 7374.2535 5386.9816 9714.8234 2592.4674 4272.9816 7138.6611 3482.5903 7199.3794 6594.8735 11003.884 3257.9471 6934.0186 4143.9743 312168084 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 29709.9566 4933.6229 8391.8052 9269.1309 7080.3912 6578.5632 6959.9248 17100.4999 5666.4325 3437.2602 126856.1271 5281.206 7241.712 9716.3477 4690.1897 4690.1897 4566.4808 22891.4919 8808.2662 7398.8816 37424.5075 10019.4458 4067.4382 9712.5807 50966.7571 6329.731 21338.3904 6405.9424 9143.7311 6855.0694 6582.6642 7579.7397 3844.6378 7534.3487 13423939 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 4817.9846 28750.031 6257.4616 4497.4654 3986.1304 4698.6625 4198.667 98024.0329 3772.5256 7838.9555 15702.7899 6312.9593 6312.9593 3625.9846 4275.0597 5934.0093 5219.0887 3368.1176 6628.3007 2690.2494 8331.6623 6335.863 7725.1675 2257.2328 3800.8909 4442.3064 2271.0851 388570098 dehh109 Organic Remediation Chlorinated solvents NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 9919.8717 8717.7493 22135.4409 13478.2564 13782.1863 4020.6066 6535.1149 13050.784 395202.2722 8656.8806 8961.5681 16660.0464 9887.3485 9887.3485 2836.5156 13451.4206 7794.6601 7401.1043 10044.7534 7989.2807 11269.5255 5809.3287 15698.9675 6766.6364 52538.7857 13317.0525 12700.1252 10669.4221 5107.7196 4031.9397 3251.7617 10708.8419 291090366 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 11703.8008 20419.9963 9036.9578 23210.435 7901.8214 6022.0374 5006.8308 15872.2707 13273.3037 5441.9399 152037.3012 8151.5264 7746.5754 11145.6154 3956.9596 3956.9596 6244.428 16652.2262 9846.3069 8725.9011 17770.5424 17644.7947 6086.4191 11122.9757 12441.8023 5698.5693 15227.1312 5580.8715 12856.8015 4633.1768 5710.7559 10048.6649 7367.3472 15269.1534 300022922 soxY Sulfur Sulfur Oxidation NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 6606.6191 5549.3046 14737.7346 2695.6356 8367.2278 4094.5702 62625.5644 8917.5043 6425.2869 2120.3692 2120.3692 6639.2232 5558.5828 2886.863 5984.8104 2273.1663 4966.9119 25308.7802 3352.4231 2884.4349 8647.4155 371586737 phn Organic Remediation Herbicides related compound NA Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 23858.5736 4499.2354 13923.0353 6394.9924 4515.5023 6403.3275 14220.1518 9511.3416 10471.4975 84405.2558 13023.0405 7489.5597 12177.2787 12177.2787 4201.877 12661.9253 6706.1426 7452.9462 10710.5242 3975.3913 6434.9334 8351.5702 10929.4376 20241.8972 10531.9475 72129.3949 5738.5123 5215.2117 9148.2118 7119.7853 37137.385 119116148 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 26158.8672 646622.2979 152304.965 60379.4886 8174.5798 21557.7738 19019.1868 65547.3009 23152.3474 47198.1757 15619.3766 509786.4221 25423.9921 23950.4138 32282.4646 17169.6136 17169.6136 22492.6753 38823.0464 26924.8961 63507.2474 42098.0798 28992.3408 15870.546 16827.9229 38834.4771 16840.0257 59273.3882 79532.2841 32257.8084 14979.148 34124.2663 20229.5193 14346.0124 39576.4922 315410665 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 50396.1674 62722.4973 451186.1515 36708.0584 36151.3788 31128.5094 32474.9052 26902.0365 346103.622 76751.5239 86045.4054 5544809.1473 41782.5764 40099.278 99267.9478 50521.0325 50521.0325 20517.4475 64802.5533 102763.2732 373051.9337 96491.4872 25501.4338 55777.2515 41974.2725 166142.4446 37820.2296 309341.8526 113152.0334 103280.2726 25452.2857 54428.2006 269676.4015 81852.8168 57433.7591 52631732 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6950.7688 22517.6228 8822.7034 3723.9848 4327.3101 3397.5311 5519.0675 6078.3977 5912.3232 145234.9454 7636.5122 7394.3476 4178.6158 2443.7633 2443.7633 4862.121 11671.803 8277.1515 5561.5712 5372.88 8566.8253 3223.5417 5258.5723 7204.7009 3425.5227 11397.4323 6931.5917 9178.8039 2436.5587 6702.8055 5536.8032 5178.2933 5369.4816 409188157 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 164177.3624 38459.9905 18669.6666 52839.5405 21827.2846 11475.2414 20502.8815 72056.2784 23794.1948 43618.3797 34247.7867 381897.0256 26783.0245 61262.2568 44251.396 25035.3803 25035.3803 10407.4046 63684.8438 17106.856 19002.2756 31091.083 32212.0958 13412.3774 42719.3759 49069.8775 21138.4873 57169.6815 93631.9072 31724.7274 8823.8109 19788.7597 18751.938 17248.4331 16606.9195 289185215 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 8308.1007 6188.4039 12207.85 6866.747 5851.5032 8796.7381 3003.4023 7094.7576 16336.4404 5213.886 234033.4524 7752.6032 12180.6837 5767.8054 3571.3897 3571.3897 6145.0592 15556.2932 9491.7644 12240.815 10205.2255 53408.453 4089.2053 7231.5494 14636.0443 6653.3449 16404.9077 12836.2968 11046.2748 13780.5753 5301.5708 7529.9637 4568.606 11805.912 313156855 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 8968.7285 4736.5806 18877.0894 6174.3621 3647.4135 3647.4135 2161.3896 13474.3776 5529.9335 258543376 PRI Carbon Cycling Carbon fixation Calvin cycle Acetobacter pasteurianus IFO 3283-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 68659.1588 28757.5957 46509.4625 25171.2055 45715.5814 24036.3732 30594.4542 57200.8608 15812.8602 24740.3065 124436.9489 39807.3779 603768.361 27730.9118 35387.9173 100428.4106 28169.4314 28169.4314 20607.9392 77218.4256 28347.7439 72636.448 41933.237 61870.1191 43582.1269 24838.7997 32270.3493 25728.7949 95458.332 71760.3079 59437.2705 20872.1781 29351.6885 55812.8227 24960.3594 47094.5726 150396782 PRI Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 7236.2279 10437.4732 8890.1924 7965.1032 4862.3528 5100.0576 2809.9272 7699.4801 10058.0566 5041.7333 124871.0247 7249.8335 8977.1514 4796.5296 4911.7152 4911.7152 5882.3756 9925.1007 6773.9572 8579.2429 6979.0457 9163.3905 3946.8549 3852.5932 15255.8084 3462.6607 15188.7645 7790.9461 11442.8028 4829.5152 5453.0658 8117.0441 6314.5356 9919.5131 357583311 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 230522.8118 39183.4871 75851.8851 31571.6684 76215.3403 18106.4009 373873.1917 93106.9295 489021.2991 77929.0559 103742.4348 93615.7987 2468293.8736 105185.6278 92502.8726 125419.6074 85586.6576 85586.6576 52679.463 166993.3899 46817.0293 61178.5952 164946.1616 60181.3066 164435.4249 64466.8571 78574.1945 148872.5948 82941.7172 210410.4538 80941.1448 106549.141 190573.6477 82096.8954 92356.6403 243255.9036 397320896 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 16674.7569 8402.1635 2619.58 211726.9012 3879.573 12047.7242 3609.4007 3609.4007 2999.4189 8258.5243 3932.6706 5074.1542 4441.2018 300789238 mannanase Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 49186.9597 10194.083 10444.5762 22508.4226 4824.7885 4664.6264 7227.2973 8984.2849 9919.7785 4052.3599 131697.3889 13731.8871 8574.9923 84078.5138 84078.5138 4709.5056 13940.8235 10349.7505 5597.521 7161.4702 5347.4998 5270.1975 19503.8268 6082.1699 16849.8377 8429.5478 27189.3661 7124.0559 8466.4749 25322.2723 8518.347 11288.8251 21674899 amyA Carbon Cycling Carbon degradation Starch Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 25521.562 18158.6415 17403.2256 58747.3497 42908.1233 10477.0018 27084.5162 21822.4053 15130.5814 22920.8524 26247.8225 16084.4954 526917.0958 33140.3064 31055.6967 27488.2949 27334.6352 27334.6352 14019.1732 36834.276 25781.0706 84525.7591 32703.5797 46765.9812 12894.8819 13649.8743 36203.3373 19073.8716 55954.3532 26049.1455 34451.1227 15418.4605 16245.3326 19111.7882 17172.53 33074.576 210049984 one_ring_23diox Organic Remediation Aromatics Other aromatics Terrabacter sp. YK1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 4559.2505 3035.5895 10687.8206 5921.0335 4432.5709 4822.5361 2713.4966 2345.8294 4155.4145 1873.0106 6226.1537 3418.9812 227494759 ppx Phosphorus Polyphosphate degradation NA Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 7410.8659 15953.2329 9689.0189 2938.5615 3441.8403 4258.4024 3863.1098 3453.7226 95039.9257 10733.0811 2023.7347 2023.7347 2971.6197 14631.675 9728.268 7346.8418 6830.4057 6100.2346 4766.6721 4758.856 8760.8613 3163.1556 16451.129 6664.5906 8869.5158 3559.5176 4794.4927 6400.2489 4326.1661 10775.3896 9949509 phn Organic Remediation Herbicides related compound NA Pseudomonas aeruginosa PAO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 4936.7586 12214.2386 3029.3729 3714.0486 5250.2084 2568.1203 3741.6487 5208.2414 1882.5037 4671.1295 225001289 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 261020.0211 13428.9284 41458.5015 65175.4255 30378.537 26803.4179 124293.4405 70567.4192 16077.2903 145990.8769 63810.0186 134839.2201 170050.2991 67049.8077 99504.6998 295607.9805 85854.5824 85854.5824 30950.5555 70297.7486 46671.9765 82909.7629 67580.1546 255026.3339 57258.8584 47423.9277 62588.5771 80588.6086 136353.7822 121406.7752 100083.4786 27890.7404 68634.448 152902.0403 48700.3775 46234.863 308226363 amyA Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 5583.6984 9414.8005 2426.5463 3033.8253 5730.9363 4678.5696 146007.972 6755.4062 8587.4845 12242.5012 8037.1437 8037.1437 6649.1525 8933.7868 9423.4146 5389.6178 5491.8047 4300.4538 4146.7983 9095.3064 3233.1486 15896.9863 8605.3949 10902.0199 2349.0179 7101.1795 5295.5625 297198810 pme Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 4689.0694 20244.604 2388.6554 6099.4493 6548.8825 66829.0518 4756.1965 5167.7265 5202.316 3752.0724 3752.0724 12850.8402 7482.8198 18759.9024 33292.772 3844.1259 9990.6976 6301.5144 5461.954 11993.8037 3380.7527 3484.7026 4076.6135 5623.9499 133778518 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5853.8416 2828.0792 4778.2839 129421.7274 4136.9716 5495.7764 2852.7366 10820.1647 4859.0203 4637.9337 5554.4935 4421.6888 2885.3516 5346.7768 3171.9023 8892.4852 7305.3573 2416.3241 3247.149 3785.3662 3594.0109 6491.8624 110285386 cmci Organic Remediation Aromatics Other aromatics Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 13045.7479 4100.223 10080.2953 24543.9836 10706.3449 9032.1703 11354.399 14846.1278 26041.8615 123802.5372 7765.8569 8656.0905 6438.5997 6764.5869 6764.5869 4785.6566 15685.2568 9046.9415 30862.9502 13324.0034 10824.6356 4250.2828 23429.3426 10742.3935 29269.0792 39819.4974 9103.4971 12927.3773 9713.1187 6883.4955 20310.5254 5884.8071 17897.9824 91777081 cysJ Sulfur Reduction NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 11780.7426 17888.1441 6242.7607 28690.7534 3177.2648 8322.4345 23118.6588 6182 85852.0176 5813.1912 5813.1912 3829.2566 48808.6484 5987.7714 8096.8842 3298.7592 4482.2687 16702.3532 3688.0634 9582.0451 6712.2378 8590.9973 18821.009 17007.4299 51159.0249 2854.6673 5424.8851 359782323 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 29256.983 67134.1328 16284.3533 26548.2135 11310.6929 10641.8275 17832.9417 6163.2669 12092.3672 16971.4326 25132.9383 241340.8297 19551.089 22287.2335 30169.8032 28679.811 28679.811 22259.8164 38908.5689 19423.7554 19064.2659 181414.8087 30553.9462 13114.6863 10672.5183 23169.028 34299.8907 45407.278 330302.6402 31790.8785 10940.5657 9545.3804 13802.6294 103431.47 34701.0028 120594808 ben_bcla virulence NA NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 4308.6797 932893.2432 3866.2819 3976.9292 6806.0148 2770.2307 3335.657 3711.3447 4042.8957 3958.5099 7822.762 4933.1651 6302.0295 6417.3894 6105.1935 3502.361 3487.1857 12766.7055 1953.7759 10284.2231 9646.6894 7634.2129 3085.2043 4231.6084 6617.0337 4566.392 5511.1367 356882675 nagg Organic Remediation Aromatics Aromatic carboxylic acid Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 39637.8595 73867.5945 45102.7118 41559.1478 15002.8466 52615.2103 39927.9053 39419.5897 25918.9705 31082.0895 26520.0029 1293784.4642 36841.8721 53047.678 50094.681 42509.3254 42509.3254 15480.3636 58174.7816 54037.4839 44275.974 56169.0748 61472.788 27830.9091 32674.1167 52924.0167 26112.4587 219724.4478 41505.3418 47373.2526 45598.7841 37503.8714 39940.244 35939.7752 82899.7924 373096261 atzb Organic Remediation Herbicides related compound NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 4449.5463 3677.5769 4358.9464 4344.7606 139515.6966 4200.1437 4200.1437 3751.4087 6886.8452 6946.1577 10487.7359 6461.7306 3551.0983 4303.5902 11959.8664 6584.1692 6207.7388 2976.6148 5829.2536 10470.793 4517.0558 11028.9799 163811643 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 9307.2451 5392.4971 4998.7515 4377.912 5889.4954 5780.8757 9287.6158 5432.9889 176243.8076 9073.4644 8280.784 8495.6276 6467.9257 6467.9257 3990.5358 14584.731 12079.3969 12287.1305 8253.272 13403.9706 3562.7447 5166.5991 9953.4008 5012.09 16062.3515 10146.6659 12792.5703 4327.2989 4897.8945 6650.1819 5012.1157 11575.7134 365273428 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6771.545 3059.9832 5094.3948 3310.3656 5018.2921 32247.7264 65336.6892 4425.917 4137.527 16720.8806 6686.806 6562.5758 12250.6407 2956.6176 9589.2664 5748.524 7018.548 4379.5081 3859.9922 4706.9248 5209.0775 259415636 dehh109 Organic Remediation Chlorinated solvents NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4830.5143 6017.6717 8143.1848 5575.6652 6012.3652 2968.248 3951.4546 5644.4083 4904.0604 3175.2186 137265.7198 6869.8672 5888.8787 4901.1342 3818.4765 3818.4765 5662.0733 9632.8539 7612.4617 9429.2532 7295.543 10740.0746 3130.676 3430.7048 10815.7227 3204.3481 14005.8865 3963.6053 10031.2195 3812.6889 4587.5175 5317.9632 3324.3529 10543.9788 220928973 chitinase Carbon Cycling Carbon degradation Chitin Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 91615.8173 307770321 PRI Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 20789.2068 283998.6348 14537.3471 36750.537 23571.6806 7331.9406 21964.7104 15422.2246 12239.9834 18054.2049 32870.0838 9823.7384 422541.3194 28801.7421 24754.0533 18003.7742 12194.5045 12194.5045 11951.4754 33289.4604 23727.6416 36828.842 23697.8224 25917.3361 13773.5204 9274.8564 22942.1744 11697.379 42282.741 22086.8898 25845.5209 11488.0847 12271.4116 214252.5594 10889.3606 27553.9963 86355887 endoglucanase Carbon Cycling Carbon degradation Cellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 18454.9128 24104.013 15093.3872 10626.0639 25921.4923 9055.4383 9299.401 4990.7343 12948.1002 14985.5459 12352.4874 240830.8377 12964.1952 28980.6106 13564.7302 10752.8292 10752.8292 10579.6287 29858.7082 18269.5853 17200.6076 18322.931 31629.9539 22094.1428 12984.7785 31384.95 8301.7216 50354.843 17944.0542 26825.1988 8676.5396 13731.8155 25712.3242 9112.4786 18136.1412 390631199 amyA Carbon Cycling Carbon degradation Starch Weissella confusa LBAE C39-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella confusa; 6325.2908 5253.8829 14692.448 2637.333 3582.0804 3975.4466 5124.4741 110630.8178 8518.3454 5119.5827 11018.0933 4187.7271 4187.7271 2892.2081 9908.1778 5497.1363 5966.4461 6696.6688 7092.9291 2323.4531 5378.724 6097.7295 2342.2251 9732.7863 4013.3364 11358.9343 1778.5208 4495.4659 4141.2341 3831.9842 6903.9168 196190454 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9565.0444 20638.0495 7868.3618 8385.1661 5245.5128 3296.6678 5403.8982 6125.4489 3467.9816 184223.7683 9756.9152 7385.9416 6113.7934 3826.4461 3826.4461 6646.7714 14099.9303 11402.2495 10988.0245 12657.6434 11025.7342 4310.7445 4904.5954 11185.2274 4751.8172 15288.0722 7933.2304 10357.3551 5477.3948 7293.5164 7753.5897 4681.9805 14898.1081 374574466 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3959.2462 8860.1844 2790.8315 14614.1578 10380.415 6210.0608 4591.975 3594.5752 9924.843 7886.8937 5627.9373 5627.9373 7513.5673 4040.7226 16612.8184 5512.6492 8471.0038 2272.9765 4340.2965 6453.8359 9962.7835 52547.1544 3990.5361 8959.562 4411.0325 42143.0411 4625.7119 17287.498 47636.4595 398227613 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 28318.0525 203539.1472 7587.4557 6242.3264 11193.0395 9600.6545 6746.0229 13352.1551 13215.8967 12114.8485 258028.065 23348.805 19054.3235 22307.6517 25099.0087 25099.0087 7084.3191 19342.342 12365.91 10520.1284 15075.6239 8283.6876 12451.3933 72599.0652 20003.4274 10684.2277 31666.8292 18688.7838 18814.3941 7646.6289 11990.1331 13900.8457 49256.0466 19304.829 310914399 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 11522.4493 5955.5729 6103.3347 6087.9288 3518.7499 5122.5971 4381.1938 8639.9574 12217.8352 7360.8831 228897.8933 15498.1072 9045.7054 5486.8736 15590.7541 15590.7541 5827.8623 16014.275 9044.7348 6194.0214 7659.6666 6639.1034 19448.6796 5154.9541 19271.2938 4244.0484 13301.8285 6277.1856 10995.416 4669.731 6062.0496 5418.8759 4358.2475 9899.5142 300111343 axe Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 24941.9345 38641.7845 16504.8452 44622.94 65118.4177 12457.9213 21443.941 33038.9155 18346.9932 28375.0679 16829.6291 11537.7098 8894.4661 8894.4661 11587.5527 58876.4814 34953.436 20437.9486 31955.0982 19215.064 13117.3277 17981.4233 22886.8121 51103.5042 56820.6868 31558.8358 43455.3297 19950.7907 24768.55 38232.7666 6416.3794 8971.7488 329902074 catb Organic Remediation Aromatics BTEX and related aromatics Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 9737.704 4912.587 16531.7095 9826.6106 5990.7471 7683.8341 8616.1824 7898.6729 11081.1809 6767.3066 174112.7968 13865.3597 15950.3254 7779.5109 5830.6737 5830.6737 7063.3349 19759.5592 15853.6103 13065.25 27924.0233 24910.9504 6758.3702 8109.6619 25697.6996 7444.7723 37353.3816 14758.8443 15309.919 5897.369 12814.866 12395.7352 6053.884 11313.7213 104780666 atza Organic Remediation Herbicides related compound NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 5036.956 3839.4567 5790.8523 9879.8004 13021.4323 5111.0189 3672.198 65379.7325 4749.4554 6347.2707 6347.2707 7162.6815 3794.631 4235.0899 8553.2102 6459.5305 2310.5183 7148.8365 6025.8823 9144.1228 27052.5449 8640.4732 6332.1924 3274.7458 4383.716 2894.7252 2895.6023 332377154 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 47822.6227 7704.4526 143818.0395 3615.6996 13139.1188 17481.9099 5271.216 196627.9944 7872.4606 8047.5585 19761.3678 17584.7089 17584.7089 5789.8111 43462.4058 5539.5543 23580.1708 7284.0835 12545.8792 5416.4931 14141.9382 10944.3382 30374.4635 32948.4531 14041.8866 4102.8379 9002.7352 9909.7378 4351.2651 8661.1432 261857044 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8354.71 13386.4442 2996.7479 11431.453 6457.874 6682.5732 2700.0193 2700.0193 6577.7289 7626.3878 4686.837 2729.9567 6750.7533 2732.7262 398894471 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 96059.209 49252.8101 25084.2174 14903.1374 73939.0208 67446.4721 143016.433 137330.1639 62616.716 41198.1397 59298.3793 2664264.6589 236377.9921 51242.5544 95344.8687 81475.5193 81475.5193 94720.1774 116853.2208 105500.7013 40906.0369 145473.3351 143442.6665 67725.3574 61454.2265 69695.745 51143.292 135526.2732 141755.3785 78199.3856 103556.1584 76982.5375 101759.1062 44370.7063 59075.4705 296426473 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9738.0609 7847.5448 3914.8872 9467.2361 9621.5076 90929.9709 4741.9951 3322.6069 5756.2941 10480.7269 4982.2388 91964.576 5886.055 11181.0571 8271.9693 54623.1884 54623.1884 5172.732 9639.0587 5747.236 11176.4099 9595.7258 25438.3696 3358.4064 3985.7834 17379.3998 5514.3291 14058.369 16238.5416 12246.9654 4717.8183 5220.6116 6925.6026 6189.8387 19779.1257 296093577 endoglucanase Carbon Cycling Carbon degradation Cellulose Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 20774.8557 12635.8815 9988.9623 6982.7168 7850.6676 5713.5629 20690.6036 6925.9576 258886.0003 16093.3498 11233.8517 24735.6516 5707.8407 5707.8407 3853.6071 28083.4138 4659.2566 4704.9368 9170.1144 23366.9691 14770.6761 13999.9966 15721.7898 7442.9115 20487.4413 13119.2447 16683.7507 8698.6097 6911.2324 26762.1134 6735.602 6111.3842 160882537 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 11472.743 8786.7796 11025.4226 8994.2761 9831.8231 5868.7934 10035.804 9617.1201 11077.6641 11559.7676 5057.7019 167026.1806 30390.8228 10177.1863 6618.0843 7649.438 7649.438 10163.4059 16465.4313 15238.3815 21057.8337 13488.3153 16836.5463 6067.1961 9670.9477 13737.7476 7857.8698 23565.0444 9874.9066 16286.1555 8049.6745 9529.3234 9466.9411 6619.9687 21672.6786 92112480 poba Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 19649.3264 11588.6207 13577.8843 65972.4934 8286.0973 4256.7272 10183.473 4165.0885 14511.839 36177.1632 98107.745 102011.633 6859.1775 110989.9095 21650.1978 69448.2239 69448.2239 19676.5392 16248.6739 15602.1418 69097.4646 31344.1543 5912.2322 20562.5024 10140.6711 25471.955 30454.4059 330405.4059 9553.8143 21188.5331 10641.0277 49775.6076 34435.4054 64263.3382 6496.9999 302475369 ben_bcla virulence NA NA Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 5564.593 17565.555 10902.0127 13219.8281 4693.7898 4514.4253 21254.1409 4691.3521 146437.997 4595.143 7105.4437 7336.1866 29659.5058 29659.5058 11562.2322 9841.3926 5253.9779 28490.973 5726.3568 3403.3912 2978.6187 6235.7823 3846.0438 19536.1876 4197.6406 9382.4868 3086.9324 11230.8753 4025.0001 3388.5422 14519.3271 154252553 pgk Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 8706.1168 18889.5241 5428.2081 15064.908 4059.1332 3526.0866 5730.5864 37781.8754 6273.5048 4757.0061 118160.2531 7133.5011 10679.3669 10154.1056 8071.9946 8071.9946 5468.919 15226.9053 10934.4035 8006.5582 77821.8741 11131.0808 4492.7269 13126.3957 12569.2937 9892.667 32308.2295 10236.8251 9793.1033 14696.7559 10596.142 14927.1692 4450.7377 6725.7194 316981136 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 4851.9348 5752.8328 3362.5908 4724.3665 2395.4052 2395.4052 2836.1422 148257865 badh Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 52616.3761 15107.5601 15899.6326 52710.6792 31091.8021 9743.102 35301.7274 55698.8405 47297.274 56453.675 59743.2513 30362.0374 803199.8976 243948.0106 33097.3475 134781.1459 50178.1422 50178.1422 23537.4328 72656.3385 34259.2564 48717.9723 44189.6674 44913.6412 22705.5846 70568.6519 53170.4593 44547.864 77609.034 29113.3823 124269.3654 29421.9682 30502.4026 60472.6925 22718.2584 44893.9471 156528161 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 16513.5334 20130.3233 2150.2611 3285.4787 2056.3239 10104.3469 5286.8761 59735.4581 1873.3495 1873.3495 6582.9277 4293.6554 5165.9348 5260.8478 3374.9946 2786.5753 18862.1814 2039.9652 9878.0574 4963.0452 8009.1317 2406.4291 5321.604 4595.6743 3246.2781 6224.8509 398805382 cmci Organic Remediation Aromatics Other aromatics Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 78130.6954 38816.6446 49282.5421 98476.9035 12752.8141 33890.4777 64581.1243 47949.8998 30911.4582 37353.5519 52545.6353 1111346.1643 55453.1055 49042.7367 110747.4194 43166.9919 43166.9919 27623.3119 70966.5444 40681.5002 49363.4355 120465.3243 515824.5377 38131.6104 56408.495 42184.4651 40878.6801 319175.4168 68820.7656 51667.7334 71956.3461 50005.3871 55889.8523 31787.3913 103684.6243 304272587 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4359.2257 7925.7488 47603.0582 2450.9178 4756.6212 2443.6152 2443.6152 6564.8705 5515.634 2365.7117 3511.5457 8632.1043 3447.1529 2537.0271 36520.4172 4702.8952 381386867 mannanase Carbon Cycling Carbon degradation Hemicellulose Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 31657.2268 130553.9359 5506.5073 1490724.7124 56694.3565 24217.7 38775.2243 29517.9308 44469.555 33989.0367 45064.3667 358302.9155 15487.4813 89639.6127 20325.2319 86127.2806 86127.2806 20571.0355 97067.2968 27553.6238 52527.0631 42580.3251 16293.0269 26281.0405 27032.2722 37565.6298 29504.5881 112767.5423 51242.2496 46137.3663 20790.6172 41837.4333 81600.6701 20429.956 21136.6685 399534463 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 4380.318 9158.5674 20771.646 4674.5607 3033.7349 4091.9495 6137.6319 2546.5704 159192.2328 5668.9713 5124.4027 6927.3366 4214.3519 4214.3519 3485.334 10310.0154 8121.9007 4704.594 3218.5295 11756.2116 2154.9994 16608.5587 9331.0248 9504.9676 4148.4141 5258.9451 3151.9802 119391451 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5603.3829 8247.7001 7007.398 2672.8324 7164.825 6963.4644 4308.7782 145426.749 4077.9282 8915.3085 9976.004 5461.6457 5461.6457 4392.8502 11067.986 3700.8981 2280.8209 4600.6947 7552.3704 2582.4081 16201.9946 20733.428 7182.2682 2374.6766 5198.9658 13564.7638 4316.3924 256728095 ara Carbon Cycling Carbon degradation Hemicellulose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 43552.7365 2287356.9562 7179.0395 1735859.8499 6292.0604 9094.7065 5500.8469 9793.7566 36903.7651 17446.845 395684.5033 11539.9778 6953.4019 12978.8682 12978.8682 191224.4905 232673.3348 14522.9009 9574.1885 18586.0564 11361.7737 22007.6424 31575.145 14355.631 55510.5908 107371.4934 79953.8063 43548.3061 33065.0042 86943.4987 53640.4157 6871.6576 321146124 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4598.3846 11761.6944 3032.3393 43211.6379 3855.3443 7633.8626 4627.8742 2080.6806 2080.6806 2908.7858 7546.4737 3717.1292 8703.4877 6434.305 5772.1895 3197.5846 5944.4624 3227.0066 8003.6744 5492.9881 2712.9288 4263.0912 4800.5054 2960.158 302847243 nitrate_reductase Nitrogen N Assimilation NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 86956.8274 6741.2324 6056.1194 3131.7013 5502.6329 6668.4225 5114.2119 8952.6208 67527.002 4891.474 11623.656 5653.8586 8351.4323 2855.2345 4629.4413 307770579 ben_bcla virulence NA NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 113227.9377 59164.3996 122261.0885 279546.2278 13339.0818 39959.5967 220654.4895 172865.4601 180979.5631 151252.7582 132686.9655 4631108.3114 451936.1986 261505.2777 141787.1912 91502.0857 91502.0857 128253.5089 142633.6608 131304.7433 137679.5441 251587.694 401131.7266 107717.2271 91415.5417 147393.8485 107188.2432 426941.1792 222116.5531 103563.5091 135604.9947 196756.5419 125030.9365 231428.1488 600020.4908 254510766 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 169768.1243 11986.7121 18933.8593 9679.6443 12724.9236 8628.1951 23995.3322 28955.9431 398882.0573 80441.8342 15878.3722 14039.7107 17662.5064 17662.5064 8792.1876 16386.9096 13578.263 93208.7663 21979.7505 16255.6272 8291.6167 12382.0023 14173.5437 7537.0617 37706.4159 23482.0317 21588.292 7271.4014 16674.0417 73378.6391 5266.8796 9810.1026 88800613 mer Metal Homeostasis Mercury Detoxification Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 17209.2272 7149.922 66286.3035 9526.2954 10930.7189 11869.068 6443.0663 8581.9899 24011.8207 21607.957 162832.4816 11415.8694 36707.0503 14279.4923 25314.6152 25314.6152 14127.299 28670.1137 26793.1155 38786.6595 112620.6367 46515.219 9138.4228 22895.6904 57749.4707 10343.298 63754.3141 26871.1579 22011.0896 11966.1507 15583.1805 18875.0284 15599.4865 44671.2639 254266625 soxY Sulfur Sulfur Oxidation NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 17833.2173 13585.3802 5520.7308 14160.9538 8061.2089 4477.4672 29232.9513 4228.4877 8879.8614 17319.615 7224.6683 258900.7749 19226.8735 12541.2594 10866.4361 17054.297 17054.297 16390.7018 19613.8026 11785.5913 11601.5957 15460.9149 26905.9789 6061.0803 7000.8535 18395.0263 8554.004 33769.6891 15350.379 22148.784 6496.1575 8765.9606 12289.1553 5339.3193 13670.9381 313140002 terc Metal Homeostasis Tellurium Detoxification Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 7505.9542 10513.4753 77309.6357 6998.3334 6519.2814 6819.3018 3992.9246 113195.6958 9154.0594 6648.4827 8429.5049 4263.1785 4263.1785 5144.9261 13348.8184 8865.0514 7408.6134 21122.4629 5456.6817 3671.6029 11906.6958 10442.7097 5179.3009 17053.4477 10288.7436 10345.843 4465.651 5902.2683 6480.3805 7952.6723 11807.9899 349701634 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 10818.7081 8534.9925 7025.3059 5569.2916 2943.5966 5001.8896 11745.9749 5941.5313 216075.566 8920.2151 6896.8142 5579.8626 2675.8745 2675.8745 7764.1433 11642.2464 9197.5534 11584.9038 11591.5236 9798.3692 5742.2363 5114.0462 10891.0333 5419.3799 18992.7632 12477.609 10680.3335 5254.4663 5759.5733 8496.4772 5095.2762 8639.1906 299746626 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8091.409 8794.9195 6138.6647 5543.739 3280.0366 5507.7269 5587.8664 194940.6221 7643.1878 5158.119 4464.0154 4459.076 4459.076 6058.0987 12160.9322 8332.259 7577.8576 9617.6996 14771.1211 4687.0126 5868.8987 8906.244 3113.0736 15633.9023 7839.7509 9881.2664 3448.3965 5996.4586 6463.6172 3536.0448 13590.7029 66048001 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6459.6005 9361.5375 8081.1212 13034.6486 6530.8458 9352.81525 21391.6764 4315.3509 13656.0423 6708.6898 9593.4335 10749.9691 6312.3873 10574.3284 12152.6377 11729.0243 11323.765 4365.931 16497.0485 22724.9531 17410.9208 4779.32805 4544.26145 11130.4896 154507717 ppx Phosphorus Polyphosphate degradation NA Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 67105.8039 77664.7685 1012906.3046 26715.9993 49190.9764 11441.5831 12641.6627 10423.9132 18322.8425 42656.7702 31705.1782 552396.1039 29190.8779 36264.0904 47588.2499 31801.0379 31801.0379 17786.3672 51390.0746 23191.8641 16503.9782 41254.0205 40146.435 14374.2717 23774.9797 20160.4552 13729.1095 64284.0809 31533.5168 42244.7854 111043.0521 26061.1859 21975.869 16273.6139 61614.2842 344317092 adpb Organic Remediation Pesticides related compound NA Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 56882.9879 183723.3529 9047.7125 20855.9308 31510.4153 26193.5575 31183.9876 34053.314 15152.7258 24767.9525 18415.5074 16576.9357 371905.6914 17711.1928 32582.4931 31125.8086 12985.9909 12985.9909 12963.4334 34600.5058 24846.3493 23460.2517 23805.9464 35637.4381 8019.889 15581.3343 30484.7529 12465.2837 35156.6443 33682.9745 30909.4174 12494.6973 20250.9584 23079.0153 9835.2692 19657.1125 408485199 cmci Organic Remediation Aromatics Other aromatics Rhizobium lupini HPC(L) superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium lupini; 48945.6473 57779.406 66274.5243 31921.9072 23486.1594 43021.0056 28319.7987 41195.5723 95704.2527 35967.8153 33164.3173 703077.4251 29265.1761 25454.7148 49494.1194 30118.9847 30118.9847 40807.8832 51599.8442 32994.7573 55692.5997 53451.8258 163343.6632 25236.6334 34432.6094 35276.5582 21885.5156 208706.6415 34325.9843 55372.4327 21862.7078 44389.038 23509.4013 30083.1518 25797.8343 260455819 amyA Carbon Cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 44809.7067 39896.9606 66234.0881 12008.4105 8367.8537 25356.0576 30460.872 11967.4319 24594.9733 19832.5349 74100.8399 304014.03 16147.409 26329.4975 50519.8603 24971.7219 24971.7219 21550.5857 54818.1756 19058.2765 86215.0094 48604.3859 30164.453 18797.8765 18694.4234 20855.8687 15396.4264 50124.4616 30204.5819 30272.2166 12410.0066 25989.3177 91336.0428 46583.6844 54981.3353 354583337 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 11329.8884 9086.6814 2710.9167 4270.0696 12482.8126 6984.2194 14344.1807 172383.3258 4061.2273 5985.4815 3036.0976 3036.0976 4254.2128 15642.4661 6114.3822 10916.7907 15501.105 3394.2335 9205.5876 7129.6782 11596.4849 9725.7458 90087.4236 16358.1847 5925.4577 6729.3634 5150.9094 4052.5057 6258.9088 156231945 dehh109 Organic Remediation Chlorinated solvents NA Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 4493.9445 6672.8709 4781.2925 37172.7087 2907.8076 2729.6263 3093.4724 4058.7449 7592.2824 237774.7578 5921.444 6531.8619 5977.8797 3362.7526 3362.7526 3178.6528 9982.1994 12576.3118 3545.7921 5431.6316 4840.9318 3280.3303 10338.1454 4128.9177 12163.0374 7643.9011 9931.9312 6029.512 5056.8033 4557.665 3541.4035 6714.393 394989739 nosz Nitrogen Denitrification NA Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 90940.0611 18339.6225 11324.6745 18161.8622 10890.0071 14433.1202 8963.231 97436.1905 17166.2249 20864.5388 10113.8578 2414312.7216 24654.0687 20084.521 26314.3473 16715.8462 16715.8462 11321.5451 26939.7918 14036.5074 25819.4825 29876.3418 21197.2861 17692.8984 20417.7785 31575.3754 19178.8365 37166.2284 19735.9687 27838.0267 6969.3791 16903.4977 16813.8363 8755.2297 16460.4296 225020345 pula Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 156447.4139 6566.2601 100271.162 30935.1409 45941.9584 9564.3564 3627.7492 64403.0595 4548.3898 4693.2872 6169.0146 3918.7119 3918.7119 2893.2021 34263.4528 6018.4192 13043.635 5112.5904 5745.885 5320.0054 12332.6095 4216.9387 19668.496 10026.5631 13749.1928 209841.6094 4532.9854 4645.815 2456.9146 5219.217 295794765 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 15699.1842 9381.9587 23746.6134 22775.7342 9976.9381 14404.7017 17762.504 14097.7463 14024.8986 17585.4151 10593.9073 565370.8897 20363.9473 25487.7953 24064.4926 31242.4285 31242.4285 11162.4918 33650.4468 19595.381 14140.1086 20711.909 18252.7013 8518.2842 17149.5934 21598.2202 9073.6033 106686.2972 261485.703 23220.4168 11019.3238 14928.9314 14296.4041 6902.3703 23978.5174 268316046 ara Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 4100.2436 12142.3389 17240.3966 4765.4146 5370.9738 5536.1927 7660.0505 105324.3383 3492.6694 10550.2257 6086.2977 4790.6646 4790.6646 17834.9499 5175.2136 4670.5484 3363.1478 6856.7731 4308.6569 9166.2594 6630.6 2631.1928 4881.1148 4361.9166 3224.7544 6082.88 320135938 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 7986.7133 10545.8381 12437.5351 6595.32 24391.451 2885.8341 8801.4661 9583.3187 7644.9467 120694.952 4710.7151 27577.0741 5696.6881 4790.0307 4790.0307 24291.6817 16192.4102 7929.1307 7758.6465 26974.3468 9817.5233 25527.2109 14973.1442 11017.9026 16932.3934 2719.4843 8120.8785 6762.142 7222.5272 156233863 tehb Metal Homeostasis Tellurium Detoxification Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 7376.393 3325.9408 6146.4362 5473.6281 207650.4998 11005.7634 5230.1358 2892.1906 15101.1089 6513.4669 4606.0931 6032.9793 4636.4041 7124.8259 2650.6923 11856.3129 6775.5636 12006.3891 3395.6378 4332.8367 5936.4731 2715.2121 5468.8698 3220207 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7174.7805 3719.2408 2553.9295 2579.934 3908.2647 3470.2613 2774.5247 116469.5779 7188.4436 9355.8005 4763.4172 2822.4855 2822.4855 14440.4568 6513.7639 15790.2159 4973.5458 6418.925 2543.4568 2835.3709 8011.3101 4323.4196 32311.9343 5230.022 6127.7052 6178.4386 4332.7331 4343.8696 192362056 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 17645.3094 8223.2077 7899.0229 4735.2364 5285.141 4042.8703 8730.4411 10443.7033 6104.8714 957224.9947 9678.9075 11784.4452 5530.5009 4089.1971 4089.1971 5864.7421 11530.9584 7979.7374 8531.7043 40689.3846 15871.0041 3280.3763 4189.7268 9972.6204 3406.5372 24003.9544 9309.2378 16538.8435 5538.5873 6112.8296 7713.6362 4535.5408 14060.3717 126644910 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 5917.394 3282.2272 2827.3894 5850.3177 5445.4086 3513.2263 118461.5992 4499.8588 6934.3891 2610.3756 2610.3756 4492.8138 11037.1773 8835.6105 4528.2059 7366.58 5100.2994 2666.6006 10054.0845 3398.1898 14845.5081 9316.4118 13842.9465 2153.5246 6850.3756 5209.4715 2442.9871 7410.6655 91802638 aoxb Metal Homeostasis Arsenic Detoxification Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 8304.2326 7313.4407 4154.2009 2991.9811 6290.8846 6797.4834 3042.4304 76861.6103 4278.2079 4246.2233 8067.4785 4269.8977 3979.4944 5740.4682 9376.1776 9139.1886 4640.498 6246.3686 3992.6398 2890.1048 3573.9989 17824.6987 7349.2894 283812112 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 22029.1966 6797.8508 14377.1222 9159.9781 3939.4769 6308.6911 14728.6734 14728.6734 4597.5779 5631.9936 2421.6824 4559.8481 20590.6716 9507.4051 6747.156 19427.7154 2789.0772 2633.333 13671.1813 8087.7454 7547.6059 151562371 mer Metal Homeostasis Mercury Detoxification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 17659.32315 6037.7982 11822.9974 11958.82095 11648.2892 17204.49205 8532.60865 5453.61965 9678.87195 14526.30305 26394.99945 166873.40265 16849.5285 8432.6635 14088.52355 14088.52355 7743.96675 15682.5924 17156.0094 15205.49565 23557.6064 17247.46095 8538.1856 11796.56765 13140.1961 8695.72505 26537.1431 27744.5685 21862.85515 9476.41445 8367.9382 15676.5528 326412186 nhh Organic Remediation Aromatics Nitoaromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 52101.489 16933.4324 6903.9761 17211.4857 7427.4337 26786.73 6085.4689 19645.2438 28712.5122 9255.7007 335647.1341 28683.2599 15945.5441 20376.7205 19211.8653 19211.8653 7598.3031 31715.4793 14506.2271 19800.3215 13547.8827 9585.3305 6498.8964 10080.1604 32997.9155 20882.6373 84087.3374 24300.6737 27297.3538 11020.029 32686.684 9330.6151 8532.2294 34178.4373 238794171 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 33438.9848 43720.4126 2937.7335 9045.4006 6581.8579 5805.3131 5274.1012 8422.2157 9940.7898 4497.278 7746.5697 53324.6056 3864.7037 4764.6446 5257.4917 9305.1952 8279.8598 17741.9966 2936.6789 3975.4777 2806.4335 52671.8892 338763923 xylg Organic Remediation Aromatics Aromatic carboxylic acid Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3801.0095 22331.7049 4257.0558 2883.2724 3795.9151 4622.0472 14049.9707 5484.4471 2597.9966 5147.8546 1710.4753 2839.9523 6282.1775 5415.9911 315449029 cda Carbon Cycling Carbon degradation Starch Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 9372.9355 22923.2521 12785.7279 9604.679 4821.6293 4815.8072 3025.6708 4766.002 6685.9258 2589.9363 155880.3169 16889.9592 6462.0196 4158.9509 4158.9509 6229.9692 9753.6654 9399.6481 15549.2631 6222.73 17575.2604 3899.8309 3980.2751 12001.7986 4614.2735 12027.4951 6866.1067 8628.5401 5950.4232 7801.8149 4085.6409 4237.5315 7051.0355 226304854 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 23283.8324 17445.9127 24062.3922 35371.9955 22548.9456 12324.2119 19814.0344 19444.0421 11265.2675 17894.3954 24071.6088 9608.7326 663026.6598 26298.7582 23181.1628 16425.0943 10576.6236 10576.6236 16206.8317 30693.8155 23528.8767 24510.9602 29142.2897 35812.7735 12078.1028 9673.5478 30984.2648 12922.3536 47832.8966 26864.9517 25865.696 13175.7175 16099.1227 16211.5025 14925.2198 38843.1727 262381226 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides sp. 2_1_33B superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 61204.4643 7560.5371 25447.2585 29431.1629 11421.0652 17698.2603 18184.2484 18358.4306 28258.8586 31812.6823 25928.658 408221.8728 21530.2805 27897.7162 11597.1 27399.9743 27399.9743 78766.1712 29951.2884 25747.6601 41073.5503 342040.88 33845.5266 8630.9807 54546.696 31618.5053 11756.3925 57240.528 55153.7195 60377.1033 13665.1182 20973.1548 27824.1027 9761.4631 24540.9122 28971621 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 25942.2605 11795.9476 7436.1708 21741.3 13142.7078 10462.5447 21667.1108 8109.04 15828.7944 16539.2871 41895.8793 248856.6683 25050.6509 14468.4617 8988.9291 9643.4693 9643.4693 10536.9055 19941.3222 13838.1679 14676.1478 17060.3585 23464.757 10002.7256 11286.5655 17536.2721 11410.6919 33657.6492 9865.4739 20641.2271 19729.6292 16440.6401 11369.6371 8629.1202 28695.1548 315444764 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 22304.0683 5011.8516 479649.2782 33433.8955 9990.5091 9658.6842 139413.699 55009.321 21711.158 59160.8822 17727.01 400189.9183 52643.0952 20943.1966 24253.0068 36561.2788 36561.2788 125003.396 53456.5674 26597.8014 30796.4071 37718.3731 18683.5128 23461.9695 25456.8235 730476.4789 45287.0896 176793.8661 37083.4345 44567.6588 13115.3623 41397.298 26801.3028 212924.9022 30808.6079 332592214 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 69962.4546 5889.9577 2422.6895 12616.2318 8206.1194 4118.4027 19056.4478 20511.4614 2747.9158 2747.9158 11142.9398 9882.414 4269.2629 7020.3883 5308.683 2377.7607 5407.7859 7175.223 13585.2943 13723.116 7547.488 5079.6944 3655.4236 7320.5879 5523.8719 31787.6162 62423205 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 5854.9489 5938.0997 2336.6514 1948.5476 3137.829 3853.8666 3297.3407 70697.1176 6476.4122 5197.3042 2624.8491 2624.8491 6746.4593 3338.025 7767.8692 6766.6047 5360.1529 2320.2296 3121.1624 2042.4126 7500.4572 6488.4586 5453.656 2800.0577 4084.798 364561462 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anaeroglobus geminatus F0357 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Anaeroglobus;species:Anaeroglobus geminatus; 7042.7661 2899.9639 4208.26 2820.0557 4381.7484 5183.5554 6710.4723 52409.1887 5672.8948 4281.1001 2510.8681 2510.8681 3353.4474 8160.3682 6131.0556 3518.1477 5707.3505 6644.2709 3639.0179 2400.1247 7467.2794 3433.899 11002.271 4654.6345 9566.2343 3043.0903 3167.1146 6640.5034 3566.5577 27254.9203 156255109 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 19516.1194 10740.0223 108883.4863 5402.1582 5321.7111 463696.5095 12449.0926 9036.7648 74417.697 45260.7828 17830.1408 9332.759 12139.49 12139.49 5216.1649 16954.4554 6503.3831 10098.4871 12248.0891 4500.5061 10962.8509 11438.5877 7690.5725 6393.0729 10504.5236 5309.5148 9631.894 5868.2758 8319.7679 11491.2915 4893.6761 42257.473 383640620 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 66052.3729 24492.4 56910.7867 138967.06 39112.7165 9256.1401 39426.8613 39997.7966 39588.2988 62813.1132 73177.3272 52393.1429 891165.268 56484.4575 116584.4595 93214.0062 55212.5227 55212.5227 42826.8553 100939.1492 36298.5495 91476.6165 77124.6298 62566.3603 39258.7698 50083.0105 49896.5307 64904.2332 192150.0426 61543.771 77206.4029 39654.4275 73702.3492 66876.225 47429.1527 74817.3898 310914125 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7833.443 5154.3953 4678.9739 8333.7103 209401958 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 112753.9947 8526.9631 14429.9394 19940.3643 5059.7332 18647.8034 48352.1707 20109.5967 13876.7842 71801.7735 84734.6996 270018.8694 337789.114 46906.3596 125986.0858 76417.3885 76417.3885 19580.1982 102617.2754 23081.7693 21830.2619 25474.9915 46041.2206 15835.2649 16249.8797 28819.2061 35791.0664 140650.8692 35740.4128 27549.8041 28945.3674 16927.3593 17516.5437 31104.6221 361100.9484 260652184 amyA Carbon Cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 59477.9819 45361.2749 31817.9339 111552.7024 20641.3128 15257.5132 30784.5923 15546.1187 33756.7525 28534.7376 35956.7549 416599.5689 39909.4694 19592.0721 51155.8172 43367.9562 43367.9562 48171.4085 75090.4295 41088.3096 23127.2274 44828.8459 718308.8087 269106.106 14485.1046 37757.5652 29090.8286 110311.4856 54458.2099 48371.6414 18745.0424 27720.4654 14724.6863 30033.5902 169962.7469 379708164 amyA Carbon Cycling Carbon degradation Starch Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 9164.3553 4718.9692 10121.1466 27366.5023 10995.6799 5560.4385 2524.101 6387.7567 9769.5876 21591.6092 128714.9616 20139.8163 9641.8901 6261.6677 3283.7891 3283.7891 5941.7637 10390.8896 12614.5853 5843.8226 6116.3451 12006.7907 3908.8913 4265.474 9241.8097 6979.1678 15970.8162 7618.7324 14464.1454 3810.9283 5624.7224 6096.0141 3278.2809 7471.1298 373853657 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8925.6673 5642.3213 5414.5306 16274.9173 6228.2771 328913.7493 137582.2459 4577.4874 11584.966 9639.2066 3819.9087 118975.3482 6796.6581 11707.7514 11795.6511 5286.65 5286.65 5399.8095 26658.8621 12403.8954 6490.3021 8662.4305 16330.5875 5292.6813 13964.6617 3627.1077 12908.3716 15664.68 9770.8996 4607.2194 8616.3112 6998.2199 15283.9255 5418.4368 164455302 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 92363.7653 16174.4887 10700.6482 4908.84 3134.3841 3134.3841 6527.56 8465.9617 5746.3734 3775.7498 12548.8948 2409.9464 31647.5913 27399.0971 4788.2806 7353.2059 384440131 amyA Carbon Cycling Carbon degradation Starch Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 10488.7343 13295.7765 6516.8597 7875.4749 6448.2206 5470.5903 11047.3829 8136.7605 10555.7834 21264.4078 273454.7095 9651.2485 12531.0799 40062.2053 21081.8586 21081.8586 17548.4763 19080.5368 9976.0552 14574.2377 21239.6536 13539.7066 26899.6493 9052.8657 12236.0841 16946.0068 31202.5717 14811.7261 15929.4293 9644.748 49714.2585 13226.519 16803.4441 49359.3009 209570250 pec_Cdeg Carbon Cycling Carbon degradation Pectin Glomerella graminicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella; 32169.7951 4441.827 2603.587 3680.8016 4303.6314 8419.1564 4986.6643 70610.8606 7251.4016 5492.096 6926.7652 6926.7652 4096.9088 12583.7533 10953.6694 6646.2024 13465.6971 6595.9271 5708.0148 8326.3427 11252.0704 16773.9219 18441.6184 8869.4587 14169.2243 5096.5475 4353.9083 8788.6737 4813.2259 5208.9406 307545382 ara Carbon Cycling Carbon degradation Hemicellulose Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 15818.9328 6769.6478 27714.814 17278.3216 6985.5525 5301.806 16894.1901 8026.9012 13567.3743 21771.0388 6256.9193 870840.1007 14294.1723 40185.7796 7326.8906 9226.2784 9226.2784 8492.3264 30036.1872 26522.6653 13218.9172 13657.049 24437.3024 10519.3651 13292.224 17937.8728 8428.555 30346.6266 15461.6013 20696.3433 11225.7426 7913.6153 10891.6684 10259.5854 20206.9879 422314497 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 141626.0635 12919.2897 30953.0196 410630.4374 17490.1797 9655.5399 38597.5085 30533.057 83174.1117 50584.3254 63393.4231 40381.6299 819805.0926 59210.8568 58458.6267 60825.6171 45992.7803 45992.7803 47530.5695 96996.9509 137792.0278 119781.6448 69337.2303 97749.3807 32762.545 58181.4352 56156.561 38228.8031 45478.1355 31841.4881 69592.0972 26282.8879 40862.5117 57723.6456 33076.0338 44192.9119 148254715 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 69917.3485 104265.1766 50888.4199 40963.6751 31791.5622 14385.3403 39372.0619 76023.8949 32381.4299 30645.92 78560.806 43377.5285 2151322.9269 71791.9689 46245.3091 64716.3049 49523.673 49523.673 52172.7427 66828.6258 29936.7089 34051.7885 90204.0403 88718.0775 48190.0892 44880.2267 38690.8385 36740.8459 165983.8939 86869.3523 67144.1247 25967.365 36695.9404 41896.7762 19246.7527 55460.6003 367472345 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 82689.3928 34506.4494 28056.519 301248.5413 279173.6768 8785.9973 15668.5463 77159.7228 36266.7912 65632.0014 42676.3349 46471.5943 17797.6714 87668.8475 218022.4513 72157.2645 43918.236 43918.236 21854.9035 48093.2686 34361.0075 113515.8604 90070.3445 45575.0432 22460.4816 54068.849 76517.3371 31595.4725 140415.1457 70825.9251 69995.2121 22097.7349 41878.4625 75826.8475 32649.3303 50655.015 403649980 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 8904.6472 9821.4025 6412.289 5965.7049 5239.4434 4317.2023 10856.7263 18119.8278 37681.5981 204966.872 23535.8146 11878.926 6936.7146 8946.6822 8946.6822 5611.0316 25293.3531 10299.7319 9413.7699 12199.6903 8505.2113 4540.1103 10205.181 10133.0202 5570.2587 44361.6632 40059.4525 10817.1247 5495.0982 5320.9804 7121.9665 6007.0158 7401.6012 71395672 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4309.6962 6841.3091 2896.4824 6832.3164 16189.4844 2813.0087 2813.0087 3356.4392 4721.9074 16546.6802 2734.4943 14126.3149 4704.3983 2194.2478 3886.0817 5246.7128 4304.2876 6496.7579 10637971 msad Organic Remediation Others NA Pseudomonas pavonaceae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae; 34306.0608 10245.926 1964.2456 3633.9347 4112.2014 8685.2683 5236.7114 73972.2171 4335.589 13042.3308 6009.8842 3051.3443 3051.3443 2860.3758 21344.5148 6267.3818 5911.5701 8668.9824 9721.4108 6139.6443 4230.984 6699.2105 5548.6695 57542.8362 8106.7356 26222.0355 4908.1822 6995.5443 9593.7431 5728.657 5115.2302 325204184 cysI Sulfur Other NA Neisseria meningitidis M01-240355 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 5769.6518 14523.3813 3066.4337 4830.8111 4286.4772 4547.3456 3308.4011 82732.6929 4422.6223 4295.3253 5185.6652 2251.7491 2251.7491 9583.7113 4404.5418 6150.9678 5906.6646 4017.0686 4218.8789 2604.6782 9147.0655 2396.8052 12897.9389 3547.5464 6153.3251 2853.3352 3773.8602 4784.3045 2506.7134 5136.0212 217968831 arra Metal Homeostasis Arsenic Detoxification Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 49310.5865 75749.8468 25117.3806 37268.9999 6686.4837 33854.9663 22072.5247 14900.5788 17301.6767 36173.3263 34125.4345 518350.8509 31285.8439 50227.1258 52265.4211 54098.9541 54098.9541 28071.3336 59457.6586 39674.8475 45194.2086 72953.041 24823.0868 25806.3754 18963.591 39175.3284 27312.6232 76968.4724 39456.1615 38619.6067 19091.0352 40649.9909 25334.5022 53122.266 45905.1989 302689225 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7505.0734 3638.9515 5806.5177 4810.8889 6305.5406 6218.9966 4929.3126 6172.6495 2311.9565 12254.8723 3209.8644 13391.2556 20664.2333 22932.2783 3423.0253 5801.2828 2704.6011 302340260 xyla Carbon Cycling Carbon degradation Hemicellulose Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 15012.5124 10095.9624 5705.0523 3520.8638 24919.0537 5224.4857 8039.144 9423.3192 4453.2503 190918.243 37045.044 7284.8572 6191.0358 6191.0358 5897.5463 24127.9274 8262.9515 13393.7805 10939.1036 7363.4976 7251.6923 5398.3609 13801.3512 3739.3651 17986.5717 8973.3433 13450.4988 4281.4402 11983.9261 7923.5622 7693.0554 13030.4799 355540892 amyA Carbon Cycling Carbon degradation Starch Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 72345.8214 80300.7742 292081.9478 54654.8193 42515.0585 70662.0627 114186.681 22900.3635 88114.987 73312.4853 86485.5134 3342096.8365 118394.3853 146468.4746 81989.163 82607.7125 82607.7125 232891.6732 76583.1931 60092.7353 153767.0492 152762.0471 72960.7066 32026.6149 94105.2981 110533.6297 75306.0049 170906.1378 125152.1984 157023.9575 63034.6711 95681.0823 134735.9799 52545.0294 57038.0786 212533607 lactase_fungi Carbon Cycling Carbon degradation Lactose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4443.9991 5527.7841 2084.159 3520.1454 4819.73 2337.2835 79952.5153 4271.0066 3486.5681 2431.475 2431.475 3683.1101 10130.0582 6625.0729 8313.6815 2825.9044 7188.8041 2664.1571 13876.1928 3402.7691 7622.4729 2867.5849 3812.8186 4423.2167 2940.1804 5934.4417 86158824 nosz Nitrogen Denitrification NA Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 9383.9555 5913.5745 8001.9388 11891.9161 4442.5272 10121.0851 2792.9427 6138.4455 5402.3003 5506.1417 109329.6257 8398.4312 9624.7763 13502.9586 8673.2088 8673.2088 5766.2623 17051.9387 19943.8033 9989.9553 13644.6136 5452.9588 5113.5667 6289.8748 11969.8784 5612.8763 27794.0563 14147.3321 19848.457 12220.0306 9158.596 9922.8724 7013.2537 9325.9476 52843220 nifh Nitrogen Nitrogen fixation NA Gluconacetobacter azotocaptans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 11669.448 24023.3816 5685.245 4420.0817 11870.8012 28819.6132 29328.1218 53724.9138 14335.569 328665.2622 24994.7199 8958.024 4530.5278 15237.0499 15237.0499 23780.591 104437.6943 58082.1374 47471.3572 18004.2738 347922.4468 25245.9788 16972.3786 11908.1798 19321.5666 53088.4978 54122.1088 26955.6641 9824.9855 23228.3777 20566.2662 81267.0151 109201.019 177839903 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 23085.682 17922.086 21901.7077 18080.8097 9672.8944 16258.3643 14708.6156 15206.5685 17176.4465 16659.3129 8348.272 414247.9091 25471.7461 64729.4125 18501.6399 11241.9563 11241.9563 16846.3761 34732.5311 23019.9392 19896.6611 26339.9282 30029.6356 13758.418 11817.6937 22805.2327 12272.863 36223.3112 18808.0904 29051.7987 13059.5873 16102.2885 29291.0051 13321.8518 31623.7879 118424476 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11715.467 12807.178 8692.9427 10423.6946 6037.8617 6853.8204 8004.2299 10342.6011 13749.4222 13014.7628 6263.406 291523.6029 18384.5312 18469.2005 14001.8363 10442.3962 10442.3962 8374.3017 18866.0334 35785.7053 15238.0037 15861.6807 24858.82 7104.2886 12690.1909 45176.95 8132.1008 30977.4687 15677.459 19396.9432 11103.3612 8816.2709 12700.9264 7341.4462 23060.343 46917296 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6383.4705 19259.9699 5322.0089 11224.8015 5612.241 71432.9061 8207.4866 4659.3557 120606.6472 11265.3288 10858.4952 8869.5648 9016.542 9016.542 5255.9094 124317.8747 8947.333 12855.7874 17169.673 6954.3213 7020.4645 9057.3775 21559.1384 46607.4699 24239.604 22345.1336 15370.3578 9541.9459 22250.7121 12088.3647 6807.7998 12220.1402 8468531 glucoamylase Carbon Cycling Carbon degradation Starch Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 6945.2856 4318.7025 8033.7073 5206.9834 4741.7743 19879.7102 92924.8553 19666.972 4233882.7759 42398.3727 67013.6716 6722.7619 4578.9233 4578.9233 4217.7465 11135.0816 7411.6209 9676.3577 6649.5343 10401.0949 3033.6273 4368.5156 10052.9502 4244.0758 17588.264 5441.2745 10420.4651 3823.5465 6617.8907 5242.29 11461.2951 13740.3141 282584231 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Pyramidobacter piscolens W5455 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Pyramidobacter;species:Pyramidobacter piscolens; 23554.2277 13730.3692 15797.7381 6338.2882 30619.6727 2789.3306 15259.9028 14323.5981 14957.4749 405989.2427 12570.2894 11024.4569 8049.4232 14429.8164 14429.8164 13103.3568 29478.458 13310.8896 17709.0558 19816.6749 12135.7313 6888.7262 13890.2471 10935.5302 32568.8219 27061.1855 39254.2079 19552.8314 7859.5094 24187.346 17663.4033 13445.9877 10260.6437 375098487 linb Organic Remediation Pesticides related compound NA Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 74109.809 5690.8725 18894.4473 79583.7813 108762.4669 19764.4677 78135.3525 20201.4813 13690.7317 120755.2532 39517.9148 3097642.1693 38666.4541 43086.341 92694.2718 32561.2077 32561.2077 22307.8424 45261.4736 77058.0514 63065.2215 161833.1007 19437.2728 12785.9173 73303.516 87106.5771 27811.5924 115991.7222 74592.4949 115645.8179 43950.8337 55148.4656 87833.7768 153616.7287 109265.8565 226834586 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 6805.3207 5397.1186 6519.8504 12386.9236 5830.4551 4764.7398 6541.9882 2774.9908 103001.6298 8905.9207 6074.7126 4446.4247 2605.0944 2605.0944 2951.3507 13506.1855 6079.4948 5070.1188 9783.4494 4351.1844 2987.1983 8767.6801 4088.2563 14528.4582 11686.2412 12680.7623 3797.7576 4783.8989 4723.3745 3536.1 8354.1839 92112432 cmci Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 5327.4219 5127.8838 50962.6136 7397.9067 5734.3893 2589.4598 4323.3174 6545.828 6643.6252 83956.2399 4931.4005 7517.6507 11893.1409 5221.5797 5221.5797 3197.6773 12864.5556 6249.8249 4750.9683 4216.429 2766.5056 4631.3324 9675.4132 2706.4404 12203.6167 6658.2094 5637.1865 2416.4587 4137.6062 9095.0319 3862.7629 9185.1482 354820177 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium sp. 7_3_54FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4113.7998 2329.6514 2709.5132 4422.5896 4272.2255 4335.4528 100554.9102 4111.7472 3697.2812 3179.1113 4127.8237 6189.4217 5872.6017 3154.7025 6119.7943 7033.9428 6414.4819 2447.8728 2784.395 2869.3559 2615.6439 6989.73 343399074 glucoamylase Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 6432.045 3582.974 3904.3223 3447.2152 2622.7267 6085.1374 6909.6554 40018.3824 40018.3824 5075.1146 10119.6731 9751.3198 21968.2374 6477.8143 6244.5458 5381.7201 12025.0285 4103.7566 7241.3678 29979.7541 5775.0212 8806.2516 387936805 xyla Carbon Cycling Carbon degradation Hemicellulose Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8829.5991 16454.0259 11354.3241 18199.7484 8317.2062 5943.6358 14602.3674 8696.6881 11964.0627 12428.2591 17484.5275 214990.1493 18651.063 11541.796 36703.0779 17431.0566 17431.0566 8051.1022 19513.0481 16943.0882 8669.1524 9514.6364 15679.2368 8650.5551 19270.8224 25204.7061 8582.309 40487.3319 17652.02 25624.8515 9326.6673 12329.5195 13414.3111 6003.9454 14462.7022 302886812 amyA Carbon Cycling Carbon degradation Starch Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8329.6355 13426.4782 7804.8655 7018.1533 4385.6533 5611.3515 10103.4646 9665.2488 4705.6915 176995.2751 10961.1702 8093.14795 8812.4718 3069.7671 3069.7671 7951.2491 11529.0981 8477.9013 10723.2084 6979.1744 15911.679 4835.2932 4413.5823 9454.6135 4555.9231 16085.4802 4685.3227 11022.398 3781.3047 6091.9428 6296.9282 4271.8788 13292.5385 182413155 RgaE Carbon Cycling Carbon degradation Pectin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 402870.9055 28113.7186 27007.745 70206.7129 18499.6575 49178.944 125330.1491 48090.7005 108185.9626 103802.5996 34471.0045 557625.7398 23397.7334 75447.2855 137522.9482 42113.0385 42113.0385 39433.9494 63830.7942 25982.3737 36436.4245 80860.0946 49988.3981 116776.1699 49808.4959 65417.1074 33591.9681 201657.5292 44189.4194 50972.8714 55840.8513 54809.7196 42711.6517 24848.5388 45068.0211 383460966 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 426465.3834 37839.614 102597.2949 182700.6987 135062.5137 21423.5498 309536.6693 152373.6211 242041.0181 78242.6722 108707.4483 176876.7301 1928641.4407 177430.8534 103014.3227 119434.2879 181563.4042 181563.4042 198354.033 131252.1303 108889.1509 251618.9712 331170.0778 187085.4509 67664.3761 126014.2583 92011.7306 165450.9054 512216.1704 161589.9518 124101.0453 83195.7133 98066.7936 94043.647 93043.7902 253503.28 87118435 alkk Organic Remediation Others NA Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 18575.4245 16201.6442 13721.7712 14581.1447 6863.7175 8783.9527 37789.4404 15105.087 14600.6065 22172.8519 44885.384 446637.3012 29131.477 40132.5498 29415.1573 27991.8067 27991.8067 18302.819 49233.6191 16851.3573 52119.4118 26391.1952 15137.5074 12727.1209 15509.3894 24346.1256 14788.3489 49794.4486 49617.2188 37950.8623 22641.3874 26409.7161 42086.3931 45108.6595 28398.5591 393180122 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 23536.7965 30695.5496 12613.7418 10620.3632 15973.676 4688.2376 6561.7988 10326.6005 6531.5394 283580.8099 9270.772 105981.1643 11630.2598 21637.4675 55578.9003 7853.1221 7853.1221 12815.9589 21150.6637 16936.5006 12558.3264 13584.4624 29750.8242 9216.5228 14389.906 19994.3992 9883.2518 25667.3271 15037.4062 24848.3592 8960.2454 10396.905 15256.7151 5375.0847 15546.5238 194540314 ppk Phosphorus Polyphosphate synthesis NA Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9785.3859 40673.1058 5390.8401 5009.5606 42101.555 4369.5809 8965.0613 8762.2483 168533.9673 8326.0838 6946.8843 13760.0975 13760.0975 4426.9169 13564.4038 7006.4405 27495.2412 15378.9483 9237.1985 13816.4209 7712.8221 8033.5697 11211.0292 19295.2842 13418.0098 14643.4629 4559.4016 6665.3342 16085.6571 22346.776 6325.2691 87247613 aoxb Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. DM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 5364.2245 8161.1587 6646.8634 4720.0178 7311.0574 6856.0017 3971.405 20348.0376 8669.0532 784831.1204 11300.3054 13257.452 25664.5916 19092.2883 19092.2883 29136.7593 15190.4696 12406.0862 80695.2075 9301.6052 6628.786 3750.5663 8618.4762 54586.3442 10139.4407 25861.3082 67500.9101 11857.3355 5480.7283 80684.8902 10026.6412 3668.02 8477.8291 116067560 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 155473.6364 18490.3496 137371.4311 37860.4225 82664.1041 65398.2213 109249.5782 65406.4482 69330.4691 98553.8229 48851.1945 47367.6153 1134756.869 79439.6564 73237.0505 120109.6507 83312.8493 83312.8493 57243.0766 71231.8328 41549.3955 39404.5425 88784.0741 172969.2187 43031.4333 46184.1429 61505.0837 36105.6392 115030.179 57901.1767 73039.0526 29755.0186 50895.1418 45112.5192 24018.8464 123406.3084 311895781 bphF1 Organic Remediation Aromatics Polycyclic aromatics Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 4444.1838 4098.2316 10877.23 2674.0867 5705.4345 9336.856 3468.9782 112339.888 5835.8129 6560.2168 5314.9317 5314.9317 8465.5646 5847.5882 2210.8735 6542.2096 7305.958 3050.0038 4989.0102 6418.134 6058.5938 3069.5743 5605.8933 221717.5355 84503302 linc Organic Remediation Pesticides related compound NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 15210.878 15100.5607 8596.8213 15183.1466 20251.6518 4393.3565 20713.0588 10479.1039 70002.9795 10740.6635 5834.0551 145322.0572 25780.8514 7268.4289 7798.7903 14308.312 14308.312 7468.3387 16153.2803 8606.4342 10190.6011 21749.1588 11054.6397 8542.7475 4652.0705 14730.5832 5117.3048 15529.2649 12199.3339 14132.0619 7615.3289 7900.7136 6243.1386 5441.6959 12210.7849 359307008 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 27828.5043 131598.0242 16581.9957 20508.1788 13413.5791 21095.6161 19714.4721 9940.0263 33769.1348 41323.3751 36920.6493 559711.1223 35282.6739 31243.7884 44174.2339 26700.073 26700.073 18620.2461 64079.7052 50123.9526 76937.2746 47642.8437 68640.3338 15300.2688 71617.5439 42622.0049 15502.8884 66247.8597 33518.232 36805.5521 14425.1791 20572.7421 59269.8762 14465.7794 27051.7708 161330814 nrfa Nitrogen Dissimilatory N reduction NA Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6230.6784 17295.3049 4442.9686 13596.8477 12728.6706 9343.6995 23555.4146 84273.0495 6236.6097 7245.7495 62423.3204 3565.3788 14068.6984 8222.7317 5195.7174 8632.3481 6382.9309 2642.239 3296.6371 9574.9182 3576.725 9439.5358 5800.9778 7283.7564 3378.7907 5406.1475 6327.3233 3816.6903 254483573 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9339.9318 8835.515 5176.5727 15309.389 5633.2593 6589.4637 6061.2134 11318.1969 7855.8104 110040.0773 9684.5468 9658.3688 5985.619 4353.0229 4353.0229 5383.875 14419.3264 6821.8148 12194.7096 11550.2913 21817.1971 20518.8063 5390.8858 9796.0827 8424.7004 23828.8187 4573.7566 13151.7232 4765.8262 6669.0407 6546.7643 5190.8364 7343.4477 146278748 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 5638.226 21324.0536 9255.7897 13806.9717 9474.1482 2551.5169 7444.0928 20897.0194 9629.1472 88634.6471 20989.7614 11231.5012 21198.8096 9970.2769 9970.2769 7562.9998 88819.5991 8481.3688 11424.9095 20450.5744 17422.6139 7318.9337 10124.066 20805.5889 19656.7184 22124.7569 14625.5128 21520.8306 13173.5378 11300.6399 18901.8873 11991.158 8938.6497 160917418 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9233.0401 7314.9529 6034.7748 4543.2069 16146.0837 5001.7461 8287.9221 6477.5466 8885.7178 70351.3416 7276.9135 25529.9276 5152.6945 6438.3229 6438.3229 9074.5355 30681.6435 11604.6583 9567.8409 11659.0477 10888.0661 6785.8577 14254.3385 7853.6436 11977.8765 26152.0001 11908.3208 16571.2975 6312.7822 13129.1032 24374.3877 75929.1035 20872.2748 29125972 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 11915.3367 141177.744 9465.9806 7571.4868 6783.6965 6370.5781 8125.9023 10233.5079 7417.5957 169750.5251 13270.6927 10233.3563 5668.6679 5247.4327 5247.4327 7111.0711 23515.6653 8754.4451 13473.8096 11386.0246 14723.0185 7800.1927 4973.4335 14100.7327 4897.6229 21864.6535 8003.8383 12084.7249 7339.8136 7105.1045 8116.6998 6264.2813 12727.6482 300712504 dehh109 Organic Remediation Chlorinated solvents NA Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 29867.8655 4954.3007 7429.8895 280186.3191 24563.968 4975.1081 3411.9562 12244.9124 32620.4798 4313.1747 160227.4797 7051.2194 7486.2642 7112.3187 2192.7345 2192.7345 5536.136 13459.778 7051.2749 5886.0636 9955.0617 5094.9998 4275.4787 5968.0029 11344.2413 8406.3364 23116.5838 8167.62 10862.1813 5472.74 7629.0225 8800.1559 5260.6469 8918.9597 166408480 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 25180.5661 51866.3619 42049.0886 12991.9103 16484.5792 22366.4836 67126.5971 22467.1513 15167.0889 14811.8525 239599.4925 25715.6202 22083.075 17775.9518 53943.2009 53943.2009 7794.9993 25730.71 18104.0492 36758.3474 24209.711 14133.8987 23033.733 20530.3995 18423.5907 35741.1072 44284.6998 26351.5223 30399.2282 11245.2613 15125.9239 19515.6009 20676.9996 23597.3874 163783644 nosz Nitrogen Denitrification NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 5207.5128 4735.1833 75165.5287 3740.8355 4901.1515 6834.1273 2870.8798 58038.3269 6638.8252 15997.7463 6809.4874 11583.1016 11583.1016 5392.0842 11003.9464 7107.9287 4724.7224 10704.1311 8817.2247 5011.522 22263.6646 10109.7361 15710.2926 6157.5648 3281.4763 3993.4561 219741560 FBPase Carbon Cycling Carbon fixation Calvin cycle Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 11403.6215 4710.3613 8701.6746 328544476 catechol_b Organic Remediation Aromatics Other aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 89621.875 29694.7456 92670.3905 21066.721 57944.2716 15553.5867 75834.4008 423322.228 43432.271 151072.1109 124491.8287 102912.252 986405.7666 209003.0266 158904.8873 115046.8654 102380.2393 102380.2393 62168.4095 221489.5559 29453.2935 96702.5683 122459.3902 32984.2148 246084.0373 58014.8959 44045.6999 95136.9197 390169.3472 91750.1144 74029.6523 103108.7561 47730.2077 246140.2876 55626.0991 69753.2265 422314411 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5020.9289 6706.3138 13167.241 2899.6529 2250.3196 4196.7528 8197.3377 2674.189 90365.3959 4612.7189 6735.5174 1971.4991 1971.4991 5122.6019 9966.5362 4702.0474 6656.2016 11232.7855 6057.3257 3009.9014 3642.0559 8806.1046 5141.3976 10256.8668 4140.6118 11461.8422 2880.1481 4459.4163 9774.2854 3834.1856 12773.4146 118170724 xyla Carbon Cycling Carbon degradation Hemicellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 12938.474 6033.8488 4874.9509 4667.162 4549.9088 4126.6677 3966.6173 8018.1429 2446.6119 104462.3757 5157.7044 6219.7367 6947.3318 6947.3318 3946.0394 8323.2315 4742.3983 4329.9218 4923.1786 4855.4223 2806.6922 4895.5021 6177.9338 2249.397 10901.5249 9890.5003 8750.3647 4962.1645 4969.2887 5924.285 4121.5952 8426.7 68345374 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 17708.2646 10736.8473 9225.1234 47429.5705 28695.3412 31570.5955 9733.7314 36546.3828 24518.5214 745859.4239 163784.9453 10289.0752 78838.1992 17380.8279 17380.8279 8178.6561 16473.647 22915.5605 8192.4477 40581.1114 9704.7398 24892.8803 31262.4668 23482.4959 22039.6125 20013.9005 17287.4491 15035.0353 4934.643 10807.6418 10342.3297 6220.9632 19835.5298 223585862 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6613.3815 68865.3392 5672.3462 7446.9928 8395.3079 2132.472 2871.0146 11425.0631 3268.676 60424.2018 9282.0193 5441.1294 6375.6667 2496.1339 2496.1339 3853.9322 9975.762 6922.6358 8475.3602 14327.3086 4419.5699 2924.9936 4357.4683 10519.0863 6397.4487 13573.4504 7155.9982 7668.4318 3621.399 8203.4485 3933.6806 2938.4016 6566.1263 311895209 amyA Carbon Cycling Carbon degradation Starch Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 195207.3126 816785.5468 593602.517 51490.8527 108322.2219 44402.2618 43313.8206 89188.5356 37241.5225 79938.3092 139943.0742 83416.4912 1477220.0703 67720.7416 216417.245 159994.2484 119815.9937 119815.9937 43123.452 95778.8426 69923.5287 83489.1866 187391.3593 136145.0184 48565.6633 47827.1979 99133.2965 45050.382 357610.3783 113650.7533 118678.8602 37739.8571 189662.7923 62653.9178 30333.9396 53054.6771 112462197 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7587.5024 21944.6727 7994.0961 11591.5357 3270.8626 6663.0014 6850.8787 45006.5211 86340.4075 4393.7459 4852.8385 13081.8632 7003.2513 7003.2513 3313.7039 12448.9893 18153.3068 3761.3911 8804.8401 47216.6435 7609.668 11364.3268 9586.6748 11369.8241 26089.6846 23599.0094 8517.3385 4759.0456 7573.1267 17573.9599 3836.8625 5622.1396 148474838 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5245.3444 6255.995 3123.8942 3583.2312 2125.9982 3463.3862 4372.7862 3253.8313 61018.555 4139.6454 3912.1192 5011.8748 2526.6489 2526.6489 5867.8748 6568.8725 4728.1646 2421.2827 3100.8731 11989.8683 3361.6408 9092.3992 6547.2323 9392.6914 3355.8807 3369.3784 4636.7283 194292157 tfth Organic Remediation Aromatics Chlorinated aromatics Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 18040.5222 15394.7107 94921.1886 45186.3346 27439.2653 36566.6768 7163.5368 769998.4095 77817.5298 41303.1167 25673.1715 27714.172 1317695.2544 40617.2274 362950.4937 48113.7228 85090.2769 85090.2769 46747.823 99236.9381 38963.1018 19708.0948 87821.9054 19357.4765 27787.8916 46816.9136 454969.295 48802.4463 152736.1394 138507.0874 44666.7157 79146.7714 50782.7177 80877.7222 37361.7111 21066.3626 154685214 xylc Organic Remediation Aromatics BTEX and related aromatics Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 19874.7616 9794.8924 11654.5578 25330.5984 7761.9354 13858.6732 8873.3282 6468.7256 13109.2099 27850.6179 9464.8525 500837.2 23976.9204 33268.3004 15513.4826 10245.0259 10245.0259 32450.7437 27051.7236 20914.2706 14185.7112 23102.6026 25011.0116 9400.8242 29319.829 25320.8568 20203.4332 39896.4724 28243.2603 36829.9778 71829.7497 15180.2195 15950.5772 12081.9462 16924.5082 375055287 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 1190793.6317 278827.6804 345352.962 19405.5747 135958.0804 17197.3169 77612.0997 185946.5773 33996.3085 39873.0311 79683.2563 28680.9605 1768583.4041 72184.8548 74640.3985 67001.9502 45706.7748 45706.7748 248574.651 88102.3992 225151.4472 9604.6889 24579.3109 359890.0307 310270.5422 345116.5601 250962.918 333549.1031 253572.3893 186518.037 152451.7523 105400.1478 66056.0561 74270.4437 20068.608 17999.2145 33577871 cbaa Organic Remediation Aromatics Chlorinated aromatics Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 19842.4004 31224.9945 14690.7115 56900.2048 20432.5159 16863.8785 16435.9272 8183.2164 20796.6327 21225.8497 467031.1262 23964.8506 11287.11085 14195.1068 13120.2546 32700.2164 18319.1006 25621.121 23860.5875 8710.3462 25147.0115 6262.9903 28505.88025 23893.5812 22721.5046 11480.6449 26128.759 9013.2319 209520435 linb Organic Remediation Pesticides related compound NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 161411.5588 73005.7462 5694.7979 9318.2647 25598.7467 19635.2914 11357.5384 11955.0614 40614.7566 20612.1463 443790.81 11786.1292 44439.2865 47172.6639 21184.9414 21184.9414 34768.0835 104003.1276 21829.9493 12082.3636 64640.8294 21831.1531 9474.0825 16739.104 14031.7986 24387.3133 114744.3356 29402.6241 20092.562 11788.005 44648.1531 17850.4267 23915.686 14829.8029 46912345 ppx Phosphorus Polyphosphate degradation NA Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 3822.4738 339719897 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 120424.0855 9415.979 19189.4596 29258.1956 6173.2573 95141.043 13255.9278 18055.4177 33800.4306 42765.5019 11098.9189 216212.9289 32149.2631 15486.0241 11708.2728 6811.5161 6811.5161 15077.1671 88208.7233 14161.1152 39399.7893 35336.9607 213887.6674 8734.5445 14131.5748 27698.5812 21143.9011 146075.9126 22515.7834 20532.619 8294.682 17212.895 13012.7396 11050.8747 24105.4821 42525626 amyA Carbon Cycling Carbon degradation Starch Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 5627.7349 5077.2742 5514.1442 3823.0999 7389.8222 5943.6018 4895.4526 8668.5189 2120.9435 4186.2178 3048.1081 6241.8317 333938303 ppx Phosphorus Polyphosphate degradation NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 117587.1914 15365.2541 107184.9753 12347.4753 20783.8213 18381.8572 22084.5231 100927.6204 34909.1802 29423.1875 45032.7708 28212.6726 10627682.1361 65904.2961 92014.4663 76885.8137 68052.3251 68052.3251 69853.9849 62028.9667 43784.9414 43725.437 71908.0155 71202.579 34586.9795 48941.2827 62226.532 89861.8523 110135.2814 38245.8151 45689.6375 118602.9982 36945.7157 47158.7436 124355.1323 35487.8416 269786383 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 14933.1728 14167.7932 28718.8685 22722.1437 3779.7917 14974.5754 30533.9683 9298.0882 17234.1998 175211.6007 66763.5922 9062.1568 11575.546 4851.9942 13069.4709 13069.4709 5985.6168 25695.9733 19049.0714 14792.8624 12670.7338 7494.5992 51483.9688 9016.0132 11172.2011 10168.9876 30726.6416 31057.2997 23310.3724 9447.3508 9155.7703 11401.2415 27148.942 10641.6625 332879273 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 11555.9037 98592.6984 10980.0011 13494.4769 6086.5666 27306.447 11569.9605 20315.3973 11606.1815 20523.8125 7580.3293 227720.1206 12868.0009 26272.8695 15614.7814 4836.8319 4836.8319 7509.4479 16230.6411 10139.939 20031.3884 17940.4799 13670.308 5538.1208 5436.9864 13703.3973 7802.3937 24695.5192 13457.6908 15939.6511 7440.1921 13369.3638 11859.599 8437.7637 18799.319 39968417 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7906.5917 7874.9496 11750.6025 19511.9555 4744.4048 7492.8094 14295.189 5934.5598 9184.848 5379.1186 120441.8752 6891.063 10728.2211 10453.7215 4817.1162 4817.1162 6845.339 15462.6905 5367.83 7571.1597 14617.3419 12769.8434 4734.1962 4098.5892 12078.3515 4049.5021 11287.8493 4151.6248 14245.1827 3989.8553 5646.238 6851.0289 5515.5196 9823.3057 116206044 badh Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 30745.1949 5985.5235 236029.2557 8843.8873 4072.623 79292.5568 3382.2168 8866.8751 10464.93 7450.3749 144817.342 10146.0321 8898.0336 11411.4041 6372.521 6372.521 6159.4985 14237.5669 6799.2184 85755.0702 23660.2023 15640.7517 42474.9354 10059.6941 54368.6551 70663.6041 27817.7496 47927.9148 11519.2621 3540.1482 6585.307 5679.504 72164.8122 25602.7065 302544095 alkk Organic Remediation Others NA Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 14420.1968 10214.2648 4471.6526 6549.9876 23411.9064 7172.5173 12019.2812 5341.0268 155027.2157 4928.7223 57087.2351 6937.0533 3603.5237 3603.5237 5810.4862 11499.2396 9962.5461 6205.7324 9705.0897 20550.031 6268.0659 5126.3285 12262.985 13686.4136 13978.4765 10297.8911 17162.3347 5835.0455 8433.1077 27022.0511 7604.619 7106.7451 326951594 catb Organic Remediation Aromatics BTEX and related aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 110558.1529 87017.2941 253230.8229 205233.193 144756.2156 57490.6312 61689.2132 157247.1921 198415.1843 147769.6282 129134.5855 77978.1302 2633767.1312 130522.0806 178852.9434 161483.6864 136939.3362 136939.3362 57025.2311 111430.182 75658.8527 628012.4959 95406.3601 71637.976 191565.1737 62486.2251 314264.6845 138818.2027 178686.5861 133904.0909 155934.566 39672.4341 136272.4155 137439.0295 33058.9893 374329.7183 152965005 ara Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 31168.1772 31528.0545 7665.2322 28331.1474 11259.0303 4029.0464 17319.1689 3553.2451 12318.658 17894.1553 8582.6338 174206.4781 20249.0647 25463.1134 19526.7522 14455.3324 14455.3324 9641.459 37100.3939 14448.6128 10974.784 31277.7274 14614.3772 6088.6172 22000.4249 28184.7474 10065.7945 28048.7768 30815.1785 60548.2723 60173.521 6431.1773 33946.0586 6338.7308 14880.8187 86140035 atzb Organic Remediation Herbicides related compound NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 22230.3537 10094.9648 35602.1092 2474.6944 2474.6944 72483.9052 29650.6502 2296.0231 4379.1376 7368.4152 56388554 soxY Sulfur Sulfur Oxidation NA Rhodovulum sulfidophilum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 72867.5354 61706.1224 12386.0479 7882.8755 2547.7951 7238.1543 4003.4056 5379.6953 15407.761 57380.3964 167219.0494 47576.9731 8978.8394 8871.484 8363.7232 8363.7232 4834.0998 12500.5515 26373.9191 22636.8743 86576.1528 11306.4824 9000.2729 14974.8639 10267.8346 5350.5977 33405.8892 11330.3442 49203.245 7305.3497 8794.7871 8080.1566 6211.5932 37075.2447 315659481 ppk Phosphorus Polyphosphate synthesis NA Staphylococcus lugdunensis M23590 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus lugdunensis; 5596.3754 7005.6347 12940.1357 5707.2663 4986.2038 5089.1501 9672.2577 228168.6713 6648.3933 9044.8609 7471.8355 3008.9627 3008.9627 5249.0769 9536.4694 9197.6475 4513.5413 6138.7651 7056.0407 2958.1211 5846.6839 11863.752 3202.7384 20509.1245 8402.807 8739.4824 3593.831 4653.5256 4912.3147 5776.3914 8521.6673 89107145 xylanase Carbon Cycling Carbon degradation Hemicellulose Escherichia coli W3110 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 5400.9184 14064.2751 3081.7822 2754.7195 2894.2709 4261.5372 4162.0208 4822.632 4946.098 4972.8653 2766.5046 2766.5046 5207.9561 10178.33 6885.7688 5554.4121 23769.9261 3808.4838 9455.5106 7721.686 18247.6106 7316.8905 11120.9673 3557.695 5516.1842 7212.1985 6040.8134 7745.4469 14601847 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 3891.3547 4733.6884 3193.4957 3193.4957 37222142 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 55920.9781 12854.6482 16039.1037 16276.223 18283.191 13280.5582 7843.1454 10684.6146 14366.9502 23623.2694 11103.3163 924741.7819 17369.717 15858.1861 24373.684 6505.0879 6505.0879 13285.6135 48147.8245 20353.3102 257716.104 26248.6866 32567.1292 11942.8595 11760.5018 38109.3976 10339.2875 43973.2995 12566.3319 28894.2618 12232.2017 18651.7652 15547.7849 15006.9429 36862.6984 114542542 alkb Organic Remediation Other Hydrocarbons NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 256896.3788 315329.3154 306837.0957 259258.1218 153590.9578 1973714.0211 131290.2736 294310.6995 156586.3657 195162.3023 334424.8806 205438.7382 3146353.4736 145619.896 291418.8574 340546.433 281170.2249 281170.2249 156647.4457 205204.9323 358073.4191 187658.9564 267394.0258 250101.2951 188007.8943 181084.9971 202292.9826 245159.8833 741702.5491 288760.7061 235103.8698 341407.1856 199041.9274 177479.5658 104591.64 440276.454 149925938 endoglucanase Carbon Cycling Carbon degradation Cellulose Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 27775.4532 570899.6807 16784.829 3631.817 4106.1278 39534.0156 27292.7973 8757.2913 8455.7594 9208.3871 18728.9637 347758386 tehb Metal Homeostasis Tellurium Detoxification Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 28026.1924 37668.4283 417416.0241 19443.1887 5287.3941 19699.2837 17621.1253 7159.5656 22083.8096 35117.5598 46782.7531 328439.1681 37190.9294 16065.802 95875.3682 25487.0091 25487.0091 9133.231 26014.8328 29062.4777 26436.2144 40425.0673 18134.7684 28607.0667 19696.9147 20140.7622 24883.8822 46173.0902 28680.2355 44753.8732 13830.9744 13333.187 52971.3486 23316.2714 30104.3646 113936557 alkb Organic Remediation Other Hydrocarbons NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7039.9152 237012.1115 78672.9948 13061.3513 5345.6002 3470.431 2196.6729 13079.5932 8000.9715 11338.5097 71649.0617 8437.3438 53461.6191 13041.6319 4896.8068 4896.8068 6305.9156 31597.7638 4760.6162 7269.6292 11359.7613 5049.4057 4272.3661 5963.9246 15167.3462 3988.1403 32672.9623 13398.1624 21172.5578 13090.9026 10971.2989 12283.7876 3747.09 13184.8316 323388198 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 13265.691 22859.104 2123.6277 4711.0098 7388.9952 10871.5473 10074.5362 3560.1189 161657.139 5434.1504 5970.9327 23349.6598 8675.385 8675.385 5453.1237 29505.2498 7022.5315 13001.5435 9238.3991 11585.3115 5724.951 7738.8757 10437.1568 20968.1973 15904.3129 9326.7649 10361.9541 8633.4584 7201.4456 15026.8248 3722.7147 16134.6491 256726695 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 8844.5114 14657.8666 17061.4554 4727.157 4597.8269 3920.922 4294.0496 6602.8677 10984.9798 4418.9092 115415.1897 7257.6611 6042.4061 10041.4719 6986.8468 6986.8468 4115.1658 14762.0758 12188.9833 9490.0803 7080.8632 11166.6037 4384.0545 5488.0585 10764.8846 4050.8424 14629.2179 9740.9777 12273.0882 6940.1527 5783.2614 17511.5315 4174.3632 11759.792 296114544 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 10687.358 8955.3766 21684.2358 20785.1064 4977.6529 11864.4724 10746.0404 4301.5551 12146.3496 11669.7326 13184.035 180875.509 54338.6469 18218.0527 10546.9721 11332.8317 11332.8317 9334.5078 27304.3442 12766.3518 20455.2358 31065.5298 11106.1953 9447.712 14621.5817 16050.6203 8895.0152 64017.5824 20840.0915 19110.8684 8038.9554 10113.7686 10875.8863 9896.8993 16845.1037 384065956 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 13391.9363 68312.5019 17959.2 14986.0149 7683.9014 3849.2075 4744.7831 12241.5215 5603.5838 158235.7866 14479.1521 6308.8539 12301.2116 7207.0921 7207.0921 5354.1962 17744.5193 8160.8469 7004.9416 15143.6266 37094.6718 6817.6318 7602.3447 9786.8264 4351.3946 38590.7815 13140.7648 9363.8717 5043.4699 6031.8479 7566.3423 18817.8352 112118.3374 127514148 b_lactamase Virulence Antibiotic resistance Degradation Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 7779.3368 12729.1862 4666.2377 6775.7585 7607.2764 8125.0437 6547.0639 5065.8335 7840.7552 5862.3496 5175.5023 185973.5095 8252.0969 8712.0679 6956.001 4845.5382 4845.5382 7164.3148 16166.5618 8324.6124 7174.8158 26047.6188 12423.7582 4838.636 2354.0595 12926.2994 3596.8272 19692.0111 5008.3507 13336.0364 5364.6227 6381.5878 7462.8704 5466.325 16423.1596 384219391 chnd Organic Remediation Other Hydrocarbons NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 26488.2055 18840.9603 61996.3944 9404.2551 5069.0019 22043.7572 22029.3421 14378.9184 17844.3193 66215.9642 15756.1788 435745.3877 21965.1457 31387.1828 23011.7568 19137.7847 19137.7847 46802.0598 47942.1743 29780.2725 25189.0547 66840.3825 18201.5561 13714.3511 14440.3434 33851.8978 22513.9011 52248.0884 63172.5666 29466.7276 15663.1987 12934.4805 68432.8313 17112.0579 30120.607 297196030 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 338761.9016 13686.2309 127069.3833 59900.9631 71349.9757 82937.9496 55163.5796 78610.7045 43431.6657 78047.4986 136211.8832 134391.4994 4294939.4215 615031.7957 204182.9364 131087.1233 91107.4667 91107.4667 74383.9149 145658.8944 122541.3918 295290.7154 236772.9891 73553.3651 44883.9478 48193.6585 60494.7214 107905.3031 350685.4413 118451.4992 297770.8693 163338.7931 215597.3015 130806.9668 141419.9111 232335.0683 385679924 linb Organic Remediation Pesticides related compound NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 13874.9753 6019.1755 11622.2932 20391.9123 20978.8248 7831.6956 284092.07 5066.4293 31214.4334 15394.1186 6026.0486 262153.3309 15460.9538 10505.634 10827.3188 21097.863 21097.863 7314.4312 13763.0706 9765.3973 7185.469 10540.4728 14368.0642 4256.403 7937.5246 21843.2719 4766.6427 17733.1797 10156.0209 17006.9957 10739.2461 21128.6508 9463.1483 23882.6002 13744.2084 325299781 pme Carbon Cycling Carbon degradation Pectin Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 11215.3333 17695.6228 8759.9079 6359.6786 6224.9264 7324.7474 5902.0558 6631.1361 3553.6995 156134.097 8377.4809 17702.6853 16152.6276 4865.7061 4865.7061 4919.6269 14745.0518 7421.4305 6784.983 17752.8299 11281.261 3590.774 7835.1366 10624.8883 6319.6412 24880.9644 9036.9835 12408.5249 3712.1711 13441.9571 8114.1882 6161.7986 8358.2938 89334795 atza Organic Remediation Herbicides related compound NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 9668.7419 21828.0626 6742.4576 29194.964 8977.0672 33661.7603 10034.1502 14223.2247 18282.9325 26106.6433 157808.0392 13903.222 796758.7773 19550.0382 18485.8579 18485.8579 16061.9792 33431.7406 15232.3787 419302.5923 35422.4695 18380.1779 21759.3123 12440.8162 20472.934 20906.6678 89319.6519 37382.0752 18324.6007 17637.7152 26965.5054 24582.2896 13654.7995 57528.8866 307946537 SoxC Sulfur Sulfur Oxidation NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 32641.5499 40928.54 4051.5459 3224.371 2137.317 5646.6628 9031.5653 8605.1268 124072.979 8396.8653 5925.9874 3448.6764 3448.6764 4744.3361 8730.0554 11898.1611 7353.9306 7908.0087 11538.6856 5355.467 4221.0153 12035.3733 4712.232 14221.0289 4000.9932 9884.5863 4684.0767 6261.6244 23548.9768 3214.0392 7666.0358 198269049 PRI Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 4967.5227 6149.9417 4896.448 3191.8562 4007.4148 4820.0147 3613.2488 139204.5063 5025.7086 4771.4531 4434.4937 4578.5277 10996.7401 6880.4788 5621.2181 5715.7932 4512.6826 3138.2186 2863.3588 9484.453 2823.6076 15224.6804 7983.2248 7899.7802 3350.5006 5078.9987 3968.1798 2822.8531 8591.6986 353221796 xylj Organic Remediation Aromatics BTEX and related aromatics Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 8978.8836 7243.5929 44856.035 8870.9404 8881.3735 12170.2244 3267.03 3267.03 4397.8508 8448.1093 8758.6744 3017.8386 5185.2301 43592.1034 741104.7766 6582.8469 5091.8038 193738.9081 3449.3798 5351.8687 7083.0299 116694497 catechol_b Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 9156.1059 186748.2302 21609.342 2907.8121 3310.2709 4630.3779 3512.8373 14439.7011 5295.7778 62387.5512 60389.8531 4743.6319 4743.6319 11248.3398 248225.9064 3277.435 17288.0537 7239.4217 2342.9919 11131.7663 4415.0386 6912.2071 3842.9622 7910.7466 3605.7478 18916.7762 189196512 glx Carbon Cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 226731.1989 27860.7813 63471.7094 192474.2922 303586.2217 18753.0412 91141.837 372582.4685 42759.6533 151673.1595 95297.989 131634.4201 1020354.7577 265465.4567 153521.0502 150037.079 137055.1515 137055.1515 68870.4018 106306.2664 38196.6868 106403.0836 139765.4875 79368.4736 41229.848 63813.8457 121375.7405 78330.9086 154099.6918 163102.6053 49800.607 76639.1974 188014.65 56172.7046 478536.5676 62426307 terc Metal Homeostasis Tellurium Detoxification Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7491.4767 4605.185 4517.526 4425.4083 4548.2431 5833.375 7151.8421 4408.6286 114518.9216 4281.7698 7965.7007 6432.3369 5697.7733 5697.7733 4782.7909 10930.0068 6455.5906 31656.3442 8199.1429 9980.6247 5330.8749 16930.1147 9488.2806 3582.7821 23485.0687 7122.7243 9251.0765 5397.5402 5280.0296 11785.0512 4254.5852 12256.8295 222084953 ppx Phosphorus Polyphosphate degradation NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 51752.4122 14819.4447 39972.0359 84428.2387 67179.7179 20301.5025 78900.2565 41881.0969 36364.9695 44803.6235 46454.6749 35676.7501 840389.5238 69919.1572 53796.4285 50768.6066 34478.2177 34478.2177 22445.8425 55343.6299 36147.534 44267.2451 81620.4904 80060.8705 25835.7422 29520.3466 46336.0173 115366.8849 89097.3526 33001.2137 47486.6503 29159.5642 33864.8037 31987.2186 36903.1358 60344.4879 218248405 ppx Phosphorus Polyphosphate degradation NA Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 10489.1081 3073.4664 9426.3498 4057.7406 63116.7086 5504.4827 5108.4694 4694.7994 5083.1023 3923.18 5990.6674 3536.9667 334882150 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 5249.7008 26470.9892 7853.8052 3538.8647 3671.4893 4555.1186 6154.5251 85595.8267 5289.2988 7571.6325 3213.9706 3213.9706 6995.6311 8159.5024 86618.0406 5226.1218 5027.1918 2556.7626 3523.1895 14493.8057 3869.6416 9524.7404 6184.6544 5782.4461 3387.6853 3663.5938 3645.7411 148636.6337 359735234 linb Organic Remediation Pesticides related compound NA Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 249182.7092 43784.6811 68804.2658 72013.4444 28518.6348 28046.9894 40281.0606 95274.8083 28802.108 66967.769 65650.7669 119266.8326 1645390.5446 71926.3496 53097.4845 93072.269 51727.2499 51727.2499 64188.8057 80678.532 53673.1583 880246.1472 55321.2679 68957.8974 33325.8902 37298.2572 121858.5157 88713.1545 178546.153 47260.841 101695.2027 27747.873 57674.5077 137608.3057 58962.5735 117137.7447 344035769 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 104996.8718 206448.3641 102689.8494 696648.2873 37262.3495 23591.8827 50817.084 51176.5865 114668.8521 39531.1275 177843.5767 63228.4122 1139096.2518 60468.0397 377392.4735 100434.1223 74369.4444 74369.4444 57136.8876 128095.5338 43779.1305 92452.7392 191879.2385 414849.7603 52488.1154 61246.3398 101506.3938 55679.598 154368.0149 46878.1263 74449.3749 34898.4489 74659.2631 58291.7036 42022.1246 72528.4215 407280155 amie Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 18994.2788 13509.0843 22686.5795 9934.2059 6491.04 15173.3689 10274.5479 7858.6794 12512.8683 14809.6228 8420.2939 245185.2139 11600.3981 12856.8553 11737.7663 15222.7864 15222.7864 10304.5809 29220.0914 15912.7436 22602.8485 23343.3468 27409.1035 8968.6392 9255.9595 19064.2372 8388.4732 39857.0331 14975.9904 26705.8612 10494.4379 15384.1519 16688.6823 12929.3976 25061.6951 257051535 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 978433.676 88585.9377 1199865.033 208118.6467 219573.152 93285.643 271334.4959 382531.7489 179313.3013 184380.6862 215544.5379 217237.011 4649871.5133 261320.4688 401209.3018 607709.0541 316188.4451 316188.4451 305700.623 289754.5545 142341.3281 596843.3322 261237.1176 698999.1645 138195.4858 173187.9995 193899.3494 153543.9217 460718.2949 259365.161 250286.9606 122217.6863 159856.4644 193468.1693 133431.4804 458609.2345 54023386 cysI Sulfur Other NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 14186.7496 8555.2458 14661.0351 9936.3129 12958.3396 15035.723 6336.8121 19077.044 39923.6624 9199.2136 362421.0104 71889.3801 17050.062 13479.2521 21387.0564 21387.0564 21831.6286 20796.8931 14110.9766 14974.5133 13927.4096 11101.8396 31633.9173 17191.5362 22450.0166 8652.2073 48623.2876 15263.8312 21123.7642 9575.5125 16791.3213 18880.7694 11060.5209 87719.8738 6689529 mer Metal Homeostasis Mercury Detoxification Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 11516.6245 13159.1719 12768.6102 5458.1448 11004.9624 4475.9022 7949.0173 9580.0946 4811.9928 160135.4611 11213.7775 9707.9038 11156.1202 12257.2761 12257.2761 12113.9103 14281.2011 12523.9158 46888.0791 19034.597 14011.0355 6466.9471 5853.3059 17321.6139 7826.2762 121892.3448 15101.6091 17313.4905 7323.5908 11874.8174 11974.4926 6421.9434 22144.9589 385763697 dsrB Sulfur sulfite reduction NA uncultured bacterium ws172H5 superkingdom:Bacteria; 4470.9822 7381.0302 28019.4163 2831.2936 8567.4595 4055.141 30747.554 4473.3223 3780.4753 7215.8576 12797.9173 12797.9173 100413.9671 7696.1155 7364.6926 5551.1121 4894.5799 17957.4274 10469.9471 5875.0158 30337.4561 4288.469 127046.8039 2798.9532 5533.9414 7764.0754 3131.3675 5912.1562 118424446 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7399.693 6565.2391 5167.9083 3674.6819 161416.8574 5724.8524 5051.8266 9302.3885 9302.3885 5574.0676 7692.5051 4625.6267 2606.5187 3011.9054 27406.0894 5082.8294 2874.5564 3529.4143 3027.4134 40742304 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6012.3194 43620.6361 70932.3925 7656.7277 9476.7574 3765.0612 3562.6095 40604.5294 152835.1399 4077.0284 5715.4001 4310.9191 4277.023 4277.023 2687.2485 6107.7702 5362.8345 26786.7879 71021.4219 9843.9815 2675.7803 2925.0653 15570.5717 2934.523 86015.8924 7419.4028 10898.3474 3698.4187 5032.4386 4017.4151 5601.0617 5683.2909 198265702 phn Organic Remediation Herbicides related compound NA Octadecabacter arcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 5494.3555 9685.3051 2922.5722 2754.9683 10326.0555 4405.2476 6089.1553 4809.3922 4207.1515 7928.1358 6359.4724 4461.2639 4406.7323 7545.1104 2912.7484 4631.7033 5737.866 4108.7977 3222.7613 4332.3456 5641.8261 164455482 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6209.8229 4032.2434 2988.1632 3221.8337 2801.8053 4817.3497 6454.0695 2887.153 7480.3724 4770.6824 3508.7585 3508.7585 3567.3861 9539.9931 6247.3354 8772.6439 5496.9648 6381.1809 2344.9511 3270.8685 7884.2923 3802.9375 13331.1136 10524.5031 8950.0459 3040.9237 15629.3995 3523.11 3353.6172 4829.1324 111224696 narb Nitrogen Assimilatory N reduction NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 12581.6222 29215.5993 2267.1382 3369.1379 2239.9643 4825.8997 4297.2921 9173.6897 75501.2171 9027.3476 5730.7119 16320.9917 4477.7913 4477.7913 14132.6737 35863.9399 3650.6478 12408.8802 6601.8872 4104.0788 21995.072 7569.3317 4400.9537 12963.0669 7261.719 18144.1686 2881.7222 3864.9679 6334.5328 4853.285 2246754 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5726.2469 17199.5885 6189.3406 6383.1119 6172.5522 15555.8269 4542.3048 11360.1673 8400.9933 3485.3494 1141707.1067 9203.6368 122305.8296 13777.2005 6404.8325 6404.8325 99224.7887 14615.2101 14503.7603 4361.5892 9316.1313 2447.3793 9432.07 9521.715 3127.1777 25802.4286 6192.9976 8711.6287 3918.9067 8449.0939 18996.4811 7651.9942 256681303 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14535.5121 8318.069 12243.7353 5100.4443 18510.3722 27316.9965 16833.2254 4298.6373 9076.0645 12390.1773 161023.7071 7713.7499 5458.9696 12218.5743 14920.9276 14920.9276 4627.5521 8538.0177 7229.0205 9380.4128 27575.457 7598.438 7568.8965 6406.6295 16803.2872 10734.2278 17432.2434 17018.2576 13700.7262 5444.686 12289.8074 7177.7102 7348.7221 19904.2445 77378677 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5740.9035 18284.7147 73763036 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 64376.0656 87103.7382 32067.6628 41182.2388 12389.4704 43736.6706 81015.2784 129996.1485 46118.7057 90600.4585 52335.9521 1411420.431 237865.1409 141637.4214 106474.1923 69225.134 69225.134 26071.2033 127510.6404 49576.3673 82578.6567 153527.087 171962.059 51710.7052 76633.0854 63502.4805 72764.8129 236754.5268 91757.633 88965.4928 74921.5033 67616.5937 60797.1312 77119.423 60317.3054 121713452 pel_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 30328.9717 17737.0127 70597.3223 11819.5515 63804.6349 34924.2848 16315.872 12554.9367 18610.8676 20050.7523 357378.0613 22331.5778 29540.5313 230817.5472 21787.1839 21787.1839 11177.3647 44447.3504 15350.1275 22329.5417 23166.903 6645.523 20317.1817 23043.7952 98931.0598 18837.356 35876.8364 30551.165 27772.791 11085.5316 24437.0857 21080.4922 12017.6224 26296.3852 403211219 cmci Organic Remediation Aromatics Other aromatics Kineosphaera limosa NBRC 100340 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Kineosphaera;species:Kineosphaera limosa; 14629.7785 23340.0199 8252.198 25096.7138 4964.6088 9497.7065 12743.0991 10091.2029 17311.6605 28306.5426 21640.5594 298782.0798 82202.2836 25043.4376 23603.5232 18494.8001 18494.8001 12614.5904 41296.1733 35081.0297 21231.9773 35171.596 26677.5668 12919.7771 19824.0783 32721.119 15915.3784 72457.1563 32182.9641 42282.2309 21640.2843 24177.5408 24629.5686 12190.2461 25242.7968 158331414 chitinase Carbon Cycling Carbon degradation Chitin Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 35294.4741 17775.2283 29159.8679 14295.3051 6090.1676 12845.5426 48485.4061 11971.131 20135.7786 27932.6622 18952.0697 612995.7882 24788.5635 31533.4916 17194.1813 26501.5324 26501.5324 18865.3611 46625.8366 27580.3529 29357.9206 33113.0584 40645.6791 16776.7406 19691.3803 29477.1357 12615.315 50851.9587 21148.1179 33143.4022 15743.4044 22003.4404 23481.0626 13142.2574 32239.5196 359148134 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 23822.9616 23297.5925 16611.1657 14942.2372 5310.0308 16496.5495 38090.3554 24340.5152 14762.1362 28810.2499 19443.9956 306404.1747 18313.9355 157431.1131 34980.9628 21208.0132 21208.0132 16687.3071 47372.6139 20557.9332 36597.3216 32229.962 37339.4204 19132.0545 52239.5156 20209.54 14888.077 116137.013 29779.0682 32309.6311 67728.0772 99860.704 163221.2084 34452.9451 53575.7127 164455724 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 151371.1578 415652.3003 160058.4757 17555.5547 10416.5455 5830.316 12661.0528 4560.0432 167364645 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 48240.6577 6530.7706 9460.7354 4239.5263 13978.3215 2780.2476 24617.7704 15205.3102 55683.721 1082168.9494 46241.6884 16435.7963 6320.7952 12805.0384 12805.0384 9378.7519 27209.6684 11990.7669 58269.7827 22802.4338 26438.3932 31496.0626 22327.3497 20731.027 6932.7963 77617.4122 16755.5099 32941.5372 5157.7772 30927.0967 44898.5516 19091.4916 22574.2832 298549763 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 31863.5164 35575.1422 53791.1944 38368.3315 46313.8307 5576.826 24021.2769 32242.0678 27681.6951 25444.1823 24897.462 42292.6357 1080571.4098 29549.0636 33425.423 84321.4017 47247.5682 47247.5682 20796.228 43896.3646 28283.6326 30398.2846 52587.2561 53254.4523 26766.6892 27610.8719 28890.202 31747.5547 61057.7349 26986.6656 75025.645 22099.5026 32436.6125 28666.9938 23536.1465 212597.2579 358752898 chitinase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 13525.2869 6814.6508 9840.7145 11187.34 9166.138 7824.103 7807.8451 10101.1091 16374.6525 14248.1876 177379.0295 12803.9318 10410.3735 8353.577 5559.8877 5559.8877 6582.0855 15811.1132 10791.8202 9645.1785 12495.7651 14923.8868 8019.9124 6059.0519 14654.331 9960.0872 21902.4182 11247.2779 15683.1649 9150.7717 7225.3387 15042.5275 12332.5936 19154.384 146192095 pcpe Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 51391.2118 127600.0755 5254.4836 6925.6354 10223.7677 12871.4511 7407.286 35727.7288 14519.252 102821.5532 18146.4169 23536.084 18572.5022 16073.7716 16073.7716 4558.5777 24201.6534 6881.8123 126063.4331 22874.472 13655.7802 13137.5027 12840.7053 25533.5767 43143.5451 31461.5321 26355.7584 19506.8888 7114.5343 39363.1129 22284.6272 20340.3406 57092.552 76058412 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4709.2646 5573.4226 5204.7817 3263.2383 2351.0361 4607.2148 5104.5012 2973.1608 107536.5809 4861.1805 4936.0301 2254.4006 2254.4006 2865.5672 9482.573 5293.8703 3391.0213 47055.7639 7444.193 2344.5089 2528.3292 6537.195 4140.5669 16467.0054 3767.7895 9139.6522 3648.9056 4302.5467 4229.1818 3469.8238 13742.5251 320151419 amyA Carbon Cycling Carbon degradation Starch Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 4522.6316 4193.1265 4346.4536 81832.0289 7651.05155 4758.9843 7077.7611 6706.1353 9632.817 6044.3479 4748.3156 4748.3156 6087.1321 5749.8596 4572.41585 6219.7912 4142.8421 4256.9222 4026.4761 9444.8317 4756.2905 3466.6183 5373.6643 8324.613 4242.7049 5423.249 377578931 narg Nitrogen Denitrification NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 90448.5131 16470.1573 304371.0003 61361.8001 88162.7446 26601.7843 80176.6324 133288.5787 203816.4155 49299.9943 81141.9591 80526.6571 964925.3728 51872.4298 59245.7251 778692.2862 51916.9069 51916.9069 126019.4573 80168.3363 42590.2703 59612.3509 122086.2005 162526.8694 43447.4901 38430.9124 60187.1778 38317.7991 159157.194 53440.8642 63817.8357 33832.9658 58543.385 47776.9606 35663.6164 100276.4276 221156399 amyA Carbon Cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 8082.7011 7211.3225 11061.3085 5680.9968 3187.214 35781.3859 8019.71 5504.4909 217186.3109 11531.0088 9817.8264 6109.1113 3935.3874 3935.3874 6799.1141 16790.9385 10281.0587 9863.4088 15423.7815 13395.7042 3689.2997 8124.9372 55636.1095 4710.2894 23269.7276 18105.7045 14532.9854 4689.4919 9111.227 8068.2098 6458.2984 14594.8564 164456192 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7654.7229 22533.6544 5627.2075 39540.4111 28224.6099 2518.1465 233448.9315 2207.7142 47675.6987 42475.8964 6825.0198 326457.0048 29988.0098 18037.0337 19630.2403 11816.1799 11816.1799 19615.0406 18213.3727 10387.6487 7596.5728 6453.9136 3076.8615 9423.8671 62658.2555 6164.9202 171075.3474 21776.8703 23116.5979 8425.6458 21242.7675 12885.0351 4831.9897 7242.9389 305383848 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6969.4917 4005.1554 3700.9709 4309.4894 1972.0811 1972.0811 2920.3842 6974.117 5049.3456 5570.6697 7382.8911 4667.9499 2487.8155 2626.9092 5669.8531 2626.0181 3129.0594 3317.2253 333607933 terc Metal Homeostasis Tellurium Detoxification Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4065.9271 5244.9238 4193.7655 4193.7655 3432.347 6605.289 12991.8405 5764.9543 1940.3818 342218942 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Megasphaera sp. UPII 135-E superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 7124.2205 333389184 narg Nitrogen Denitrification NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 81178.334 67162.7485 89954.8462 46236.9096 44947.7495 43169.7316 51399.9033 106208.1977 74247.0401 67458.6607 42859.3076 1059305.454 43224.0645 73709.581 54849.3974 80217.8688 80217.8688 38279.4807 40575.2218 33930.4159 92460.0145 106159.245 127379.9628 77765.0531 87546.4344 85101.618 57239.4505 319568.2718 59755.4584 118706.2814 41739.9224 28341.8731 62880.6189 34749.8183 70081.219 315276363 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 5594.444 7352.7001 4000.8636 4399.7609 5215.4097 6261.3343 6261.3343 7121.258 7713.5724 2899.0651 2488.2548 4414.9576 83814922 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 7691.7088 10802.0064 5203.4758 5359.0865 4078.8039 2779.6139 5594.128 8971.1693 3712.9755 173719.9728 7710.8966 5565.6304 4360.9098 3465.5949 3465.5949 4535.0764 11872.3455 7175.9498 10498.8391 6715.6581 9049.8955 4391.4543 3843.723 10954.1492 3528.1554 14105.8951 3661.2926 11174.0786 4779.4545 5242.8649 6078.7441 3663.7184 9038.1707 323139061 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 16298.7447 8443.1445 18482.2731 895090.2418 5285.7605 11087.6434 18218.0838 16070.8802 17806.4619 24934.192 9551.4438 662645.1688 32624.9851 21147.9592 12709.2258 24642.3192 24642.3192 12339.1026 23900.0523 23153.2675 23776.3244 20620.9403 17808.9043 12423.0364 8550.1842 29778.4163 10024.3036 49454.3935 27451.6786 27246.0841 12147.1833 13470.4374 14473.1093 11574.4362 22966.1718 15130898 phytase Phosphorus Phytic acid hydrolysis NA cf. Ceriporia sp. CBS 100231 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporia; 7656.3876 110400.8854 6463.4455 3753.8132 3536.2288 2738.7989 3922.5173 6849.506 58467.9462 4997.0468 279612.0801 4475.9617 4475.9617 5652.8845 12382.1775 6620.1302 8496.7424 4795.2185 3925.6537 10172.2237 3830.3407 7673.6549 14052.4092 4239.7649 5189.245 5947.8352 3975.5504 7246.2656 353243505 glx Carbon Cycling Carbon degradation Lignin Piriformospora indica DSM 11827 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 4568.6424 2481246.8839 776396.4197 3255.2193 167044.0484 85069100 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8796.0021 5075.3083 6375.548 2185.5955 3390.4143 6726.2365 7514.8685 3968.4469 146478.4614 9200.38 7670.3563 3743.5803 2713.2195 2713.2195 6123.6243 11529.9325 8247.5518 8194.8647 12800.4795 12761.5296 3572.426 3755.0348 9527.9066 3243.0334 16767.1559 9105.7292 10758.1625 3877.317 5940.0625 5763.7803 4870.0253 15965.8934 68135557 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3940.2668 4254.9043 71162.735 3937.8146 8403.1572 8403.1572 3051.3527 11314.4351 7496.134 7259.668 6258.5056 5093.8337 2725.0949 6146.2399 2664.7777 4964.3289 7061.733 2286.0733 3380.0151 4482.0146 3206.6257 16813.9565 390411599 terc Metal Homeostasis Tellurium Detoxification Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 5377.4038 14931.1697 5830.302 5368.2427 3079.6655 108535.3131 3520.886 3363.0904 3363.0904 4537.064 8612.5725 4283.0822 3984.7127 4478.6701 2224.3839 2947.3713 5238.5883 2886.1419 27870.8398 7539.4598 2528.9935 3999.1339 6248.4945 2208.8139 330467880 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 6102.0384 2388.4326 4874.0739 3346.7948 117175.0266 5131.7316 5268.0781 2150.9756 2150.9756 4221.6794 7737.9088 4409.847 12097.4115 5621.091 2735.9779 2422.0501 6001.2326 3333.5994 11045.2318 5087.3736 6509.4056 4726.37 5820.5412 3482.151 3427.5822 5797.9284 310791274 lactase_fungi Carbon Cycling Carbon degradation Lactose Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 11514.3839 13016.8397 12059.5274 6501.9023 4350.6789 5394.6511 9913.3929 5663.3144 33214.0517 129750.9108 10539.2735 9412.9626 4514.2658 10477.5682 10477.5682 9068.1042 14337.645 6730.4245 7157.4459 16769.9804 14290.9949 4182.6947 8621.9436 10461.6781 4555.5376 20084.7608 6358.3168 15298.7913 3865.8404 8483.1087 7021.8812 5573.4102 8356.2633 254948266 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 388866.2576 27061.8319 33514.5339 9783.7047 33834.6998 10256.0191 96334.0253 13654.3732 24562.6813 129765.8119 12069.338 17652.6319 452710.8079 20372.7944 39422.216 22613.272 30485.656 30485.656 10307.1641 27582.7469 11450.0943 123450.7721 44520.7017 65628.0843 14312.3865 19188.7924 37002.5142 16483.2827 45937.8211 48462.9033 25014.3497 8285.7434 28977.5072 41040.6893 19468.6528 38033.1153 270153915 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 17364.6608 9809.0049 6749.1333 18562.7174 5117.6415 4070.5426 11228.2338 9477.9878 9641.6588 18773.4817 6877.8857 264098.3165 10382.6614 71640.5088 8746.7732 6179.1071 6179.1071 10092.4218 24891.6187 21995.2608 9288.7587 39186.0155 15151.896 4610.1574 10632.4232 25779.5555 5402.1929 25127.8945 16378.8513 27286.8795 8766.2263 9100.23 11848.5916 6203.8266 19814.6956 117648361 mer Metal Homeostasis Mercury Detoxification Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 4384.5835 2460.2561 2032.8723 8298.4437 6186.629 3861.7242 3861.7242 6517.5795 3665.2609 3125.5368 10352.8497 6694.0294 6114.6764 5221.5907 56476012 PRK Carbon Cycling Carbon fixation Calvin cycle Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 189378.3597 46006.7357 112138.7799 42195.1167 45371.2673 13155.8358 47899.7562 110716.0781 56212.229 48695.1473 191074.658 96678.1195 1803477.5135 49480.3178 78839.8797 134737.9636 84832.4764 84832.4764 84461.2756 142422.1048 56062.8921 95957.7242 127777.957 546005.8184 112149.2706 129926.6416 100303.2346 96622.8088 360420.0876 111478.6631 102023.7061 63627.6 103048.7351 82199.9835 104220.4424 722488.3552 383776190 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 14515.0134 477167.9058 7831.4394 28313.4675 14889.0961 10652.8176 6061.4719 5223.3208 7910.1617 18149.1543 17327.8282 334044.3449 16757.9178 38018.5317 17633.3245 21462.6536 21462.6536 11264.8401 25415.3144 12103.0867 12580.4579 16415.0266 10197.506 13414.8617 35846.1113 44203.4912 10272.5367 53760.4348 142874.7685 24550.7463 8625.539 18773.6586 17645.6785 6656.6361 14618.8728 209874150 nirb Nitrogen Assimilatory N reduction NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 89706.5893 58117.6319 81338.3112 72759.883 69784.4172 28092.1499 80192.6958 154338.4119 73490.9415 79144.9884 82531.3993 81586.3276 1515246.7961 146075.5404 111204.4731 106815.3328 91933.8178 91933.8178 47705.6469 119116.3783 51969.8831 112156.7419 109722.8102 82768.0994 40763.7182 67319.2561 71521.3413 64100.5175 138066.9297 50674.3512 91206.0725 49956.1766 58252.4657 74495.171 52134.4148 78984.2576 29125968 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 19304.129 20218.2369 19205.547 14723.4352 18705.092 19587.3764 11868.0053 21872.7863 23811.7443 9064.1161 364322.9225 30554.1758 16666.0408 10294.663 11395.3806 11395.3806 12727.005 27661.3408 18405.319 15878.73 21069.469 26720.041 9998.3631 10446.7162 20983.1772 13221.3038 46119.8918 17989.3056 25093.4024 13145.9114 14167.6619 11675.2564 13051.8743 23797.3317 284390178 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7133.0756 10501.8635 12275.156 11762.4311 10245.155 12147.877 7206.3069 3402.6311 17410.8941 5806.405 160342.7867 14503.2056 18280.0578 55970.3556 5849.9877 5849.9877 4446.4015 12509.1695 8231.3557 17559.3203 10424.5489 4980.2761 5775.0842 25873.5257 9879.377 5045.2023 17617.2587 13627.7782 13727.5352 4506.3034 6554.5277 37813.1332 23572.6338 9365.669 399990254 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 21087.4132 58634.7017 6076.675 4114.7918 2513.0613 5359.1196 6342.9031 56517.4963 9752.7757 7414.0787 7414.0787 11998.621 6641.8157 7499.748 13766.5695 23992.5788 9167.3634 18105.8471 6160.9405 31008.7658 7442.7637 17879.886 8745.1922 5365.2452 8884.0079 3139.1911 334127848 amyA Carbon Cycling Carbon degradation Starch Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 11451.9983 4304.0478 19976.1069 5358.8079 3085.6217 2695.142 9783.6294 4960.8503 152538.9196 4673.0252 7328.1727 5832.8222 12555.4798 12555.4798 4484.1647 18126.8775 6589.0224 6221.2229 5836.1728 9894.4629 86452.9501 9304.3314 9698.3136 3475.4442 81374.3126 7468.2167 8323.0101 7500.327 4424.4112 18613.956 2633.2207 9196.5178 219677638 fccab Sulfur Sulfide Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 16623.2122 14510.9523 2185.2679 4277.694 3998.1533 2462.2021 9559.3179 8108.7921 4444.7996 4444.7996 11114.6265 4861.6484 3782.6875 8758.4112 4787.711 5106.0084 2666.4222 4380.5385 10416.9062 1782.3525 3948.1819 149277880 arsm Metal Homeostasis Arsenic Detoxification Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 6842.26 2871.1505 4123.179 2438.3604 6798.4053 3139.2865 73186.6627 4563.318 3004.6254 3004.6254 3741.584 9751.9012 5341.9219 5876.3574 6715.8552 2690.9188 2632.2452 3304.5579 9042.1261 10332.2036 7760.0418 2291.006 4371.5823 4367.2986 3273.9515 10128.7916 38427002 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24326.3646 8241.1538 19722.3855 5481.1371 28783.9062 165729.2898 142909.1108 61848.4736 12539.9744 11135886.2309 30049.2274 16573.0688 15789.2423 14914.675 14914.675 42653.1506 23283.7031 16586.9366 79460.8588 26174.3325 13374.2417 15836.5684 11821.0241 15117.6193 18795.6893 48426.4133 33504.1391 22770.1681 7993.8129 20129.1737 38114.3394 63178.9604 18216.4649 300657602 exaa(moxf) Organic Remediation Chlorinated solvents NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 21271.8207 36483.023 11792.4712 4394.614 4409.3603 3906.0779 3583.2353 2002.275 4602.285 8208.4685 84704832 mer Metal Homeostasis Mercury Detoxification Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 5168.0871 4042.6491 340550633 nasa Nitrogen Assimilatory N reduction NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 52443.0281 25720.8655 3982.8524 2921.6172 33250.2752 12744.7027 494566.9852 7051.4653 4419.7818 14183.8846 20842.5277 20842.5277 4873.8826 11553.9911 4425.6934 4741.227 13862.9948 5754.3252 6371.0713 6554.1387 6205.1728 7151.0486 33355.4253 9851.2665 7596.3307 4918.0509 6179.3041 10547.2355 11227.7085 12778.4191 358245451 narg Nitrogen Denitrification NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 102763.7094 35681.614 101017.0645 63633.3069 16545.8868 15313.9706 45722.3217 36473.0587 31416.9077 86878.7728 37007.0146 2026711.1269 41858.7578 49640.3713 56836.9935 30413.5783 30413.5783 83642.0037 130275.9861 49485.7595 125464.3567 261371.0944 16891.1061 27829.8899 29710.2075 54284.0775 20029.9216 75003.8165 72655.5391 69592.2769 20477.9196 24388.0357 54780.8294 28941.3873 52964.0807 254511709 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5725.2273 205612.8314 14940.6542 4057.8884 3577.5737 4680.8376 4881.2328 10199.0309 11738.5816 159034.6838 10196.5003 5687.6735 7569.2472 4162.246 4162.246 6180.8498 20459.3639 7801.8809 5321.0688 5735.5775 7415.1882 17887.77 8736.938 12316.7878 6114.8698 20559.4487 6073.5062 7313.4942 5030.9035 6591.3569 10743.7481 3957.9066 8745.5639 6179922 dsrB Sulfur sulfite reduction NA Solar Lake Mat Clone9065 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 34558.1991 18569.8564 1996.3933 42207.0162 2143.2219 6126.7837 10598.4691 5999.0799 117892.029 4373.7143 21365.351 10354.7735 7141.3352 7141.3352 16170.2125 13453.6194 9130.4058 22575.4972 14200.995 10832.1905 3189.0876 9385.6106 10853.7257 15800.4836 21813.2397 17080.2526 14221.6939 2049.3736 6362.7028 9527.6743 20745.9945 17676.4491 377528051 cysJ Sulfur Reduction NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 9449.9623 236181.6992 4405.1891 3592.5284 3317.3463 2633.0711 5425.2436 11367.8174 62612.4892 5663.8772 7584.7054 14734.0077 5100.1655 5100.1655 4818.7564 11623.4909 4005.4093 14789.2766 12915.4897 7328.9976 3696.2185 3369.0031 5959.297 3638.0721 11882.7007 8086.8657 8703.636 3135.5582 61751.5781 6657.8424 2156.0535 9364.3566 157939871 protease_serine_fungi Carbon Cycling Carbon degradation protein Fusarium sp. BLB-2006a superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 4111.6549 4096.4108 7980.8384 2549.5673 84016.9149 5472.5809 6431.0762 3980.447 10276.8217 8237.9268 4603.782 5324.0757 2575.9743 2595.6349 345869999 nifh Nitrogen Nitrogen fixation NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 58671.2562 27942.0891 40241.5291 36563.7183 15881.5638 201954.8812 28224.028 11037.6063 42507.4214 130963.2419 27053.4138 573656.8553 37929.6894 55120.7036 32819.7062 25947.8432 25947.8432 23596.1081 55873.8679 27281.581 54228.4985 57755.3087 52589.3244 33625.6695 48819.1257 40487.9217 15994.806 78039.1431 46564.4259 53857.7362 22563.685 26295.6025 71551.0638 16450.1327 33985.4936 257064787 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 174752.6126 25086.8966 5378.661 4152.3886 14393.5243 4411.7919 10365.389 4265.8163 53820.5568 22632.852 4903.6833 4227.4632 4783.4027 4783.4027 8524.6178 4739.1087 117281.7819 5843.5373 5622.0818 2826.6504 12653.4684 11952.0953 2588.0089 13520.8588 8561.587 11613.5238 3728.4629 71837.0545 3306.1034 8644.4526 8503.2354 77463325 ppx Phosphorus Polyphosphate degradation NA Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 7658.1653 21696.3307 7849.4433 35978.0721 10654.6849 13161.3789 12191.7393 6495.2078 11968.2417 6861.0466 226036.7943 8366.1987 11512.7571 22757.282 9166.2386 9166.2386 7369.3043 21593.4304 9647.4219 12312.7454 40249.513 7417.5963 4810.5043 8074.0469 18778.4969 4603.664 24534.0959 20240.2391 16945.5559 5915.4754 8031.0861 9639.8152 4423.1995 8531.9842 373461824 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 4885.3653 5177.5057 22345.1194 16364.5578 2751.3658 5569.0245 4900.0623 84320.5046 5909.074 4320.544 2799.2222 2799.2222 2559.0462 9074.9134 4848.4646 4440.3217 5164.8308 2989.7478 10900.2342 2378.0492 11365.4598 5995.4038 5819.6434 3780.3595 4652.9278 3968.3838 2618.893 6814.4625 257335312 FBPase Carbon Cycling Carbon fixation Calvin cycle Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6970.6243 4742.4105 8205.4478 2892.611 111345.0762 1950.3757 3775.7351 5021.0125 3081.83695 169766.1388 4767.0211 4799.5218 2854.0817 2854.0817 4413.6472 7175.1771 6858.1853 4648.4604 8598.6824 6729.63585 2378.4749 3588.0704 7377.4881 3521.7484 20271.1987 8055.8311 6509.6191 3010.55175 4723.7098 5738.8724 9527.2693 190688548 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 27154.4904 39355.9971 14755.9386 10889.7003 10083.2977 17223.5707 29457.2317 19923.9938 14877.71 32917.2382 30849.3596 2360981.5543 16946.3707 39529.7074 51063.7148 22134.2314 22134.2314 11734.9104 56069.1758 21707.4192 25972.6867 74353.9123 18852.0493 13658.8917 11804.4013 37643.0834 57761.1167 56301.361 25305.3446 27575.7291 9586.9796 18788.4984 40549.1156 32459.9436 45856.6749 118591561 FBPase Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 39312.3122 12562.8636 26339.0784 16011.1216 33062.3041 10277.716 34174.8892 14706.6773 31520.1832 39554.7308 28284.7714 1322422.5291 35163.2017 50596.7481 41919.5705 33854.5447 33854.5447 18611.0959 48244.6308 30364.7109 70620.464 34989.5819 45372.8161 31206.3028 83145.8306 25952.8558 18327.1038 70507.342 36625.3931 39085.0444 21518.6304 46904.0854 40360.2795 18933.1405 72476.6374 162707982 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7838.0639 13653.601 2216.2173 15709.3241 31573.3599 4878.0687 2952.4592 2952.4592 4455.1445 3383.6618 6016.7513 4589.2524 9656.3881 5191.5575 6320.9105 3725.7374 4376.3809 5357.0094 2938.0534 8498.7291 310796419 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 14892.3937 16286.7884 12543.5545 7275.9613 5771.6923 2461.5388 13013.6751 18364.8144 12483.4487 252705.9432 21824.6987 14342.4197 23476.2254 14540.4898 14540.4898 9887.8254 19100.4601 7113.0924 15449.1432 18922.9255 8404.9084 6315.04 11183.3856 17012.2226 5569.9551 28646.7141 8710.6437 13926.9638 5372.1625 10527.1281 14297.5295 5673.3838 25635.1141 225386957 amyA Carbon Cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 5327.6042 4672.7902 14185.3867 2414.0219 3468.1355 5903.2354 3304.5191 76878.2991 3433.7412 3521.1527 7742.7027 4072.0442 4072.0442 4415.6291 6015.1731 3313.5183 4115.8724 14519.9131 12307.4802 2411.7121 5682.2605 6132.4594 2931.5865 12792.6657 6948.8711 10381.5353 3298.9514 7504.9304 3911.6713 2699.4765 60326739 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13102.1117 3950.7916 7327.7854 7735.0236 3267.3234 4909.4746 5899.2684 82598.1193 7410.269 6563.7334 57050.1703 11865.1344 11865.1344 12337.4226 8368.645 10713.5657 19512.172 3886.1491 5705.5458 6763.9376 5616.5133 15867.3264 7915.9332 10320.0591 2579.2001 5356.6205 10575.0178 3040.5114 5479.6388 183580359 gdh Nitrogen Ammonification NA Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 9539.0873 6480.6845 6010.6771 17043.2823 22977.5988 2832.6883 6628.0259 5674.3794 151742.3212 5146.3165 13003.6191 7974.4653 10205.0458 10205.0458 3043.5809 9499.7048 9398.8771 4237.2833 9408.4207 35767.236 8938.3217 3329.703 10150.4902 4230.6166 8772.6609 12018.4553 2684.4574 3785.9921 4394.6282 2113.5933 5137.5268 46850236 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11352.5498 11130.0243 6240.5802 8327.6297 5381.646 9109.8718 8972.7763 4867.3159 3854.6551 9426.9128 4789.9617 143981.5049 9543.8292 9193.4494 7119.1292 3656.8458 3656.8458 3733.2589 16260.5224 5074.9281 7032.9635 9332.3985 5301.1766 4087.8903 3461.1371 11578.0417 4548.6701 12034.2283 8472.4124 14339.8709 5525.3665 7150.2983 5899.7142 6554.8169 10997.2504 337760420 aln Organic Remediation Others NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5114.3493 17331.2913 3680.8581 6283.8574 2729.2592 4296.839 4418.4794 2908.3029 74907.3344 4342.5134 3594.1886 7842.004 14719.7684 8715.4404 6958.9777 6576.8269 3513.2674 3036.2298 6574.0736 3915.9487 13121.3114 9198.2435 9993.3747 3224.3098 4330.3532 5330.6164 4154.37 7185.5609 329927607 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7189.1488 6267.8814 6516.4702 72641.2087 23373.8551 4748.2114 4948.2065 2381.4101 5560.3263 57575.6939 12383.729 365263.6699 4881.4658 22634.7503 9601.3753 9601.3753 6926.6678 35074.3526 7626.8418 8369.7386 10562.4205 5594.1679 5050.0493 9744 9873.7142 26499.0926 21614.6758 26376.9419 9315.8277 20665.3186 15675.3659 4049.2771 12546.2016 152982901 dehh109 Organic Remediation Chlorinated solvents NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8402.5399 2601.547 2673.618 3260.759 3253.6175 103195.9357 4196.9209 4251.4069 4606.1649 9006.9002 9658.4159 10885.2873 16355.2897 2708.7207 3160.5094 7673.9026 3981.1737 12536.3353 6914.7172 8864.9623 3030.9565 4564.2068 6707.7956 2649.8524 8307.4838 339282949 mnp Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 24140.1614 12684.1945 341373.8886 37779.1946 63212.626 110699.4432 19418.5297 26202.069 25009.2306 37314.2458 44515.5785 20326.0262 508037.6544 51452.6014 50724.8423 39773.3899 79404.3825 79404.3825 21137.5756 63726.1363 26776.3124 18319.5418 32557.6151 129352.4838 10945.6567 29000.9641 46084.7469 16986.9682 67246.1977 40848.1872 59352.9242 18740.7259 19124.3218 20467.5851 23196.9997 28169.4573 133778504 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 67337.8699 143279.6715 11522.1838 44963.9683 21695.387 15218.0204 36099.7428 26057.3928 710751.9753 1287664.2148 101907.0818 56794.1695 36557.735 36557.735 26835.2239 154426.8128 119788.5522 138341.6192 73128.2168 47232.8039 48216.9896 53759.0127 40493.2207 51411.7378 262349823 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 18677.2672 11463.0294 11458.3293 14048.9688 22275.5476 8593.6305 20144.5569 35553.2168 15319.4904 16440.4113 39347.0105 13749.3986 359616.7397 28484.8555 36004.7975 24640.7859 15376.0048 15376.0048 15163.8689 33589.9449 16078.0369 20043.2486 28018.8716 28912.6521 9574.5041 15846.5983 22851.7692 26208.8768 88217.1438 24265.9328 30295.7119 10903.4616 17268.4497 13657.7531 18091.438 35910.7543 295700301 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9852.1515 2089.6851 5717.1264 5122.177 5751.9014 2772.8542 92510.0296 5852.3392 6574.6203 4402.0064 4995.5891 4995.5891 7963.7151 4950.4443 13994.1717 12245.6318 6016.8383 6246.5419 4277.518 6696.1264 3128.8365 15079.0805 5331.566 9633.9591 3236.1169 7148.1022 5282.8484 3895.024 6423.1819 54027104 cysJ Sulfur Reduction NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 239638.8921 101214.5208 127139.0673 134139.5618 295916.9553 63350.2037 40316.0372 184319.1901 166950.5293 323557.8065 292440.2069 223298.753 2738698.8292 193189.3877 345444.9776 831281.2257 310014.5874 310014.5874 112089.6159 151440.9202 130495.0715 433287.6674 248824.578 246701.0011 261378.919 323204.8011 218787.9346 329443.5388 206004.5082 800103.6426 275363.6045 445489.9002 171010.9438 282958.9044 103265.1289 605079.004 45181609 cellobiase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6690.0202 21182.7825 4336.0888 3329.0249 3878.4038 5259.836 2223.4516 116765.949 5298.4744 4728.5966 2494.9294 2494.9294 3252.0741 9865.4062 8361.0483 5482.7157 5137.652 4160.9489 2832.5395 3134.2461 7362.018 3824.1609 15840.9054 4924.0044 8082.6257 3308.054 4684.7187 3591.8966 6371.2154 6476.4203 149204419 SoxB Sulfur Sulfur Oxidation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8547.1315 6349.485 9532.7005 8042.2311 3216.0742 26535.2014 8494.89 11084.3309 181376.4361 11627.0985 16961.6972 9895.6303 12115.1298 12115.1298 8098.0743 18964.931 16723.4409 17375.5833 65891.5223 14829.8129 3942.7922 5419.4703 17109.7996 5590.2775 17738.9517 14463.5784 17682.4612 5127.2636 7694.1979 14190.3808 7068.3458 13154.2104 15807656 ppk Phosphorus Polyphosphate synthesis NA Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 14434.9227 4480.0645 2920.0695 23521.9472 294883884 aoxb Metal Homeostasis Arsenic Detoxification Methylobacterium sp. S47 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 5672.3882 44127.8454 3414.4961 2046.4745 5394.7312 5749.1629 2796.0162 81419.481 6379.6066 4722.0565 6694.3999 3501.0291 3501.0291 6623.9582 4925.1919 28568.7463 5096.5944 12136.9694 6408.2154 2985.4729 5383.4655 2198.2414 2737.1492 4470.6103 7850.855 3810.1543 3831.1485 3989.9139 2619.4011 6295.9267 119225958 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12181.5083 60419.9678 8530.7673 5648.7336 16661.9223 2829.4411 5431.4888 54881.3104 54562.7809 20489.6957 27489.4171 155339.4217 8553.8484 7479.2878 7832.8624 12076.6864 12076.6864 9707.3751 9327.2268 6329.5045 13562.7676 6704.3179 10262.5108 6599.4249 4373.3851 11234.1646 8698.7561 29196.7049 18061.1655 33730.5475 5582.4686 5272.1056 6735.0423 4497.3167 44251.287 114227416 ppx Phosphorus Polyphosphate degradation NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 242994.1836 5866.1697 8413.6342 21598.6526 54353.7246 7791.9563 5439.2539 28226.2304 15919.9098 27023.5598 163261.4369 141249.0709 42191.7896 14752.2199 11515.2524 11515.2524 10153.237 110755.5419 44794.9853 10977.1276 23440.9488 11993.9545 9205.6562 10091.2494 21242.6266 7876.7238 29316.3696 15355.7953 35506.3605 8710.7892 29619.84 30095.7829 15019.8834 14650.9331 186470670 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 119139.847 97828.0825 46604.3073 59965.1483 86982.2315 56220.6233 149993.7448 68521.7824 157458.1824 81593.5367 70038.3331 1265990.4118 78631.746 139783.1941 97264.5592 94635.8135 94635.8135 29573.2885 276578.5902 44212.9266 91417.8172 184304.3457 86282.0721 47853.0421 50611.4056 50775.1289 92263.2327 184310.0728 115107.9518 130632.3025 43889.4418 65078.7576 65285.0129 158805.625 59908.4957 218548839 one_ring_12diox Organic Remediation Aromatics Other aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 16183.6716 11646.2068 5916.9156 7362.987 2799.4642 6202.909 9842.937 10836.8709 185086.9747 10307.0071 16437.2352 4981.7841 5819.0966 5819.0966 5448.1122 15860.1624 17071.5682 5460.4813 11091.4171 9382.0004 5013.4609 5548.4007 12488.6236 6856.5334 20941.4084 3732.5016 12893.1586 5152.9994 7529.1637 14832.9477 6316.7386 10972.678 294787173 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Parascardovia denticolens F0305 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 7005.0682 4605.5343 3380.4501 25849.6194 72029.3463 3753.4237 3717.0327 3717.0327 10372.008 6540.1376 7869.0568 2427.5276 3266.1469 5502.7599 2242.5409 9792.1853 6808.9612 10527.6914 9868.4216 3599.9425 8352.6347 295111808 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synergistetes bacterium SGP1 superkingdom:Bacteria;phylum:Synergistetes; 28107.8417 20553.9582 45716.6624 38981.7798 46821.98 15168.5115 21894.1637 21108.3504 21619.843 24362.0309 569547.3625 20453.1808 26343.8593 19654.2563 15319.863 15319.863 18963.6095 33650.5476 177860.5121 36374.4379 37504.7918 37596.9649 18225.5207 24440.0879 20763.8984 24623.9428 49731.5469 9582.7981 23945.5161 13273.3972 20283.2076 21138.9854 13854.1624 33110.9599 76056963 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 130133.8706 1355170.466 36594.7913 23376.1737 48438.5622 12897.6869 31836.687 106952.0444 46789.8041 80221.8134 153512.2519 60520.7165 591557.5315 106239.7646 163317.9705 167654.6395 69844.3484 69844.3484 64818.2577 133423.0605 66246.9986 163022.3261 98333.7346 130281.0233 36523.7474 81218.7744 96204.0318 88686.5425 172917.9489 38940.6889 111214.8845 47176.9703 90548.4341 149570.3442 35819.0945 53396.0283 221728304 catechol_b Organic Remediation Aromatics Other aromatics Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 75913.191 6298.7543 6431.7743 12603.5999 6468.5276 30303.0242 10375.9425 6456.7805 11200.2317 65304.7363 91079.1559 9582.8031 8049.4906 8856.1201 27298.0369 27298.0369 15966.2357 10576.4224 8922.9623 3784.6562 6963.0433 19806.5939 12029.3257 7091.562 30100.388 7935.0037 30950.8684 9688.9372 14651.732 14735.558 15105.5147 10888.8157 7874.1767 5900.4656 76577544 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6195.2259 8402.9698 6334.8903 3240.7443 11281.65 4760.8969 47851.9205 69952.3237 5221.068 5221.068 3188.4662 12287.2401 4239.9614 12626.5382 3168.5924 6263.1875 59377.3913 31996.6027 10178.6637 19925.7663 4297.763 10564.2901 8797.6295 5464.6816 226235517 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 16698.0501 8808.4917 32980.2107 8426.8092 11952.9802 13313.5671 10564.3203 16112.9663 18417.1595 32270.3137 359605.5124 20453.3232 17735.9326 11327.9271 11546.78 11546.78 13234.919 25300.7878 16749.5627 65566.455 24161.0452 18557.6124 9372.3226 10096.101 21573.0985 7544.651 34815.3543 20147.3872 20967.6719 6632.4717 12371.5312 15243.958 8103.6361 26807.3405 301114401 EF1a_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 11188.3836 14781.4824 4042.6985 5581.7505 3467.4975 2297.6708 5574.9985 3617.1987 6628.8229 2195.7266 2195.7266 5676.9182 5158.0827 4991.1825 4328.8244 2224.6292 5356.3321 3107.6689 2453.5001 2673.7965 2852.2454 2140.2359 112462821 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 73618.6383 29585.4094 10099.9003 28129.6778 6890.5581 7415.7764 10023.8251 9095.8585 20430.4501 29732.5341 40858.2702 408680.9107 32136.7552 13921.3314 40678.1474 48054.0691 48054.0691 31805.6963 63540.2531 26597.1686 63913.4412 267466.6297 236082.3192 9381.6581 30337.2256 36928.7501 7634.9113 44106.7931 28368.5507 31064.7574 5538.0103 27803.1195 17889.0229 11517.0523 19216.8607 226833061 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 20526.8038 7258.1201 9486.3223 467429.4453 3487.6125 5899.484 5272.9819 13855.8858 13286.1596 80738.0128 248091.1836 31826.4002 8027.1725 6377.8562 9146.9839 9146.9839 12000.4805 20531.324 10912.1981 20040.644 19885.0173 18793.0856 5616.5657 12915.3782 21961.1848 8149.4324 28787.9468 13043.4123 29398.5709 10189.444 15908.9622 10564.2903 5121.7647 15452.5717 326196965 cutinase Carbon Cycling Carbon degradation Cutin Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 27652.3153 6970.6812 9540.9831 23964.6663 7295.473 23392.6319 4152.2837 4007.5157 62370.7432 12132.0788 44665.8394 144307.9258 134294.18 6762.668 30109.6953 104259.6497 104259.6497 4685.6072 13580.2012 6650.7396 13928.2708 28676.5718 17861.2744 10173.8936 8909.5312 8180.1223 7237.066 23439.6883 7510.6989 11633.7039 4168.0539 10818.8839 40528.2239 10182.8734 42584.5178 85835814 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 17065.1503 24689.4477 36945.4475 4719.2497 11977.1225 9845.2662 6769.7522 11837.7447 8944.0013 7088.4481 69845.2684 12021.9449 7954.044 19892.3328 6514.4027 6514.4027 3463.8839 17463.4992 11534.7738 6027.0453 25772.2059 5466.3355 4957.8281 5421.2994 12627.0046 8927.9104 17757.0257 9156.8682 12030.312 8227.6705 45223.0902 7276.9448 14827.6976 10198.5555 239802576 tktA Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 30118.9444 27644.111 52566.5128 19590.3973 25589.5556 40228.7247 40818.6623 78799.0823 62413.6363 31312.6707 105664.0964 54226.7166 1225023.217 77426.1136 65980.1705 161991.6987 44775.1637 44775.1637 40657.3029 57429.7174 51342.9584 184287.6181 52878.0143 65275.4896 44563.8618 54611.2407 46509.7398 70654.8794 141044.0438 66510.0084 60309.1428 52493.2257 64730.5409 142735.4341 49145.3992 109588.6208 148265428 tehb Metal Homeostasis Tellurium Detoxification Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 21453.225 9804.9236 8392.8913 12385.1252 7092.6734 6756.6451 4465.0142 9335.3756 10826.5699 5838.1358 193685.9602 13686.0445 10942.268 7637.8597 4617.6011 4617.6011 8523.9571 19102.9886 13141.4581 10908.4697 22956.5415 9655.8779 7090.3533 6735.6002 15110.4141 4688.7066 21508.7124 13196.7003 17771.6791 6323.4143 14182.1423 7666.4321 7474.4617 17234.7258 78185710 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8805.2191 3872.261 2551.3669 3309.0492 4637.099 67420.7969 2363.7365 2363.7365 4093.2835 2250.2701 7818.9783 4105.1443 9055.7413 5666.8252 7173.339 1727.3279 6038.2431 3401.3823 4446.7149 237686555 sqr Sulfur Sulfide Oxidation NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 174010.716 41106.2057 114616.0636 1122513.1124 168335.5281 17672.744 82311.0542 120425.4924 98501.2131 234127.8792 370749.601 138929.518 6471773.7461 178316.2149 519025.7307 321526.5348 331339.4063 331339.4063 100078.9091 105917.3846 62849.8615 198941.3503 271635.7162 139846.7711 75917.5699 226113.0179 144763.8201 126302.881 186620.75 132449.1095 182557.1907 73962.4766 75597.788 126779.2928 78822.2883 1299080.0283 365899018 narg Nitrogen Denitrification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 42342.4927 2514689.4432 5303.1958 11174.1904 2938.9786 42385.9758 49825.155 12314.2453 115407.3595 11172.5614 159032.0434 11673.7792 8467.9003 46746.7299 5897.72 5897.72 5859.702 34944.8094 185141.9123 13655.9808 9850.9409 7760.7154 10098.9634 7717.7259 12394.3611 12330.2698 26292.5506 8272.9538 18854.8128 11245.3371 8846.9436 14227.5673 16496.6204 16980.5911 170777149 trze Organic Remediation Herbicides related compound NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 245908.9143 10305.581 19754.7375 81850.2376 95549.9486 29106.35 34964.6135 15971.577 28673.2598 33184.0422 22294.8631 746869.6037 30900.1931 33765.002 53934.6594 27051.5094 27051.5094 20441.7747 58641.4631 27188.7036 47764.5627 180259.3854 35171.8702 65149.553 22151.7963 37106.9279 33480.381 60925.0354 39530.8244 70171.3975 25858.1194 29679.1358 50241.5316 33657.4947 24553.8332 282162874 vgb Virulence Antibiotic resistance Degradation Methanocella paludicola SANAE superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 4368.8765 17429611 limeh Carbon Cycling Carbon degradation Terpenes Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9527.5517 55574.6315 13727.5224 15321.7899 14888.9123 12896.5472 18073.6025 6317.9623 52626.8865 32413.056 22084.7832 329798.4074 11960.6163 21111.747 16445.4224 6717.3402 6717.3402 7161.3714 20924.1412 17594.1102 139939.4559 12633.258 10738.0145 9748.224 14337.5601 13672.9025 54523.5227 25286.0129 24585.6238 31559.9636 10421.1848 12794.7028 32303.0475 9102.552 10182.0487 335350199 amyA Carbon Cycling Carbon degradation Starch Lactobacillus ruminis SPM0211 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 23111.84895 10650.9899 9610.1159 12670.5199 11054.8368 7928.3491 8139.2316 10084.22325 24034.7523 8426.31545 13267.0373 12832.55935 10620.70625 17120.38865 8243.17955 8243.17955 8791.14035 18705.1355 9974.3116 29736.0655 7562.0469 8793.83605 13400.71805 7943.57885 19534.82755 15681.0121 8624.93505 8030.3377 6936.9629 24737.62505 365417573 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 31013.97 27188.5887 19835.2653 22266.8075 7472.7474 13634.545 69273.6889 12207.1409 19172.3774 28879.2137 13397.611 306683.793 22253.8871 22326.0808 28456.173 18812.8162 18812.8162 104421.5731 29170.4233 22092.2591 358450.3162 25184.7979 62700.0162 22460.8152 21362.9708 26526.4961 12898.1286 43796.2005 34861.0677 27005.5238 8461.0838 16788.1274 20638.1181 10387.3046 21447.109 332012931 ara Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 86018.9882 5835.1158 24489.9684 12165.7797 442616.7952 7596.1699 77443.8705 16905.7365 31813.8507 42977.8072 53140.277 7239.4866 40582.7751 16863.0648 15277.8001 15277.8001 6624.7338 21891.0342 13052.179 17434.7127 25322.7301 10814.4751 4630.517 47738.4888 17074.5318 15387.8623 65192.6403 7556.3147 20092.1916 17123.2088 8168.3439 12102.2131 9473.0657 6596.8901 115363958 cysJ Sulfur Reduction NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 85050.0005 7424.8917 4373.2431 2673.972 4536.4382 6240.8861 88970.3836 85454.7675 4178.7778 6728.3981 12593.8667 4420.6434 4420.6434 2950.7055 16074.3764 4789.0936 9089.4417 7379.1411 8693.3546 3992.9521 4904.1964 5850.1431 27830.9535 16317.4482 7492.6326 9411.3509 4143.0986 8268.298 7905.6311 2391.2062 17709.5099 126731634 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 6079.2172 5510.384 7639.64 2951.3624 6396.322 55481.7019 5700.738 9013.7178 2804.5376 74885.5943 5728.8933 7404.3098 5492.6755 5492.6755 4932.3426 9030.4058 5581.7476 6564.887 6640.6611 11358.1486 5411.6381 2996.8308 9015.6683 45538.7257 13723.2276 8053.1603 33320.6162 3409.6554 4419.7183 16443.3988 3503.5896 12957.2358 356690637 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13165.0941 5967.0473 16845.0771 32934.6143 9107.1102 11193.8531 7919.7102 13983.645 9583.161 5687.1546 216037.4764 9006.4299 21849.5033 11044.8836 10550.2215 10550.2215 5393.1355 24507.3827 15363.5352 22372.912 16179.8234 13064.7933 8520.1043 10698.6282 17932.2306 7997.4892 22448.5334 17185.7851 16818.7661 7373.5264 8998.8875 6927.1177 7108.3384 13438.5482 85672453 nifh Nitrogen Nitrogen fixation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5245.2797 5785.0312 2571.1485 4041.6774 4190.3132 68452.0186 4259.6959 8228.724 7795.3931 3973.5559 3844.4271 5138.488 4878.2022 3697.8525 5679.7224 5992.0033 5756.4025 2568.1066 3515.5145 4466.7079 2906.0344 6667.0812 302658962 glx Carbon Cycling Carbon degradation Lignin Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 6167.2563 4562.85 3620.3758 100898.0468 6020.4895 5080.9943 6851.9672 9119.6627 5453.571 5929.0221 4732.2706 2648.9714 5965.9314 2775.6114 8977.6623 5568.3023 6977.9859 2308.4549 4124.5546 3784.7696 3542.9139 329848838 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 20341.372 18094.443 16446.1941 147399.9956 17856.7922 2470.0197 5490.7014 218774.8039 12697.7804 8246.7261 13474.2498 204120.5952 15784.9311 29082.7963 43856.0982 21196.1781 21196.1781 5062.0864 18627.5399 11691.7681 10779.6824 31732.9363 6681.9069 5272.9093 9752.2791 8134.9675 95933.7021 72763.4337 79250.5872 17086.8828 7925.8397 70846.9612 16282.3538 11590.7582 27581.1456 347945036 arsc Metal Homeostasis Arsenic Detoxification Glaciecola nitratireducens FR1064 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 8871.7661 10571.5942 13700.3059 9167.5874 4377.0935 8459.1567 12171.4556 3448.0769 124323.3936 8701.6918 5880.7929 5090.2344 9177.3617 9177.3617 9578.0558 14193.0812 8884.5067 7172.2311 20456.9444 10630.4223 5562.6624 6141.0887 9266.3231 4382.1066 19145.6816 5625.5226 10496.0142 6347.4205 9213.7422 7435.8348 6534.0556 9023.1564 359305355 catechol_b Organic Remediation Aromatics Other aromatics Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 5347.8573 5633.9033 4940.9044 18181.7998 7664.7823 5035.3789 14161.2507 3434.1768 6360.2057 6821.7805 99160.1804 9330.0507 12023.7075 9609.0262 6720.3916 6720.3916 3072.0808 18037.0171 3798.0705 4508.3189 5814.8915 4770.9436 6872.012 11404.5867 6101.4775 10698.507 7276.0303 11770.2236 3322.1637 8814.0462 6942.5568 17310.1209 6946.6953 153867966 napa Nitrogen Dissimilatory N reduction NA Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4272.1459 3629.648 8649.168 3453.4957 3453.4957 7299.2766 2251.9738 4600.4424 333806756 arylest Organic Remediation Aromatics Other aromatics Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 16828.5179 624385.4986 216419.8098 5737.794 5926.8226 5683.5643 2122.2098 4687.2687 4343.0209 5898.8675 70063.1226 4511.9768 64173.6657 6683.1849 3074.0384 3074.0384 5566.8682 15699.5476 7965.7493 8079.017 10982.7118 7596.2037 3450.3498 7223.6956 9365.305 3749.6881 22317.0994 71641.3074 8036.3529 3458.4271 6158.0348 9783.5918 3738.0097 6873.334 95111085 terc Metal Homeostasis Tellurium Detoxification Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 5411.5305 6558.622 12441.0802 6254.0318 7703.4375 2200.6561 6261.9607 5606.8599 5105.0856 115046.2591 9807.113 9264.7172 4797.9357 4797.9357 4766.9476 11426.6555 9504.4329 6088.8561 6938.9218 8023.0399 3122.4532 3973.7082 12862.1431 3329.7368 15475.9331 9436.0613 11374.0143 4851.649 4830.5693 5206.6924 4046.5157 8664.3145 88780561 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 17263.7857 19431.0229 19982.2301 13252.7639 16500.1064 21719.7043 10418.3327 15856.5727 19870.3931 30424.9322 10415.4593 457858.547 19195.5096 86672.2844 16614.988 47108.4123 47108.4123 156727.8304 28842.7621 19866.6867 50183.7309 25578.6467 20019.0285 11366.2415 30166.7805 25254.9135 10732.3907 43870.75 17011.4954 24970.7094 10342.1787 16992.2168 40022.0775 11560.8304 57347.0715 310830175 poba Organic Remediation Aromatics Aromatic carboxylic acid Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 45985.1373 11073.4836 43452.6422 14626.1738 10111.7629 7452.7359 22509.8288 20730.8427 70872.1847 128912.0473 48982.0383 563788.7304 18761.8412 37344.0478 73090.0604 20031.5057 20031.5057 13037.6522 58492.3147 28561.2116 31953.0238 44610.1993 22265.8063 49467.1945 18714.2089 23421.2299 31476.2739 52196.805 28894.668 33530.5562 15425.2469 79516.8706 27367.0929 29796.032 19519.121 76058152 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 76768.5388 40820.8887 73542.8585 98782.797 100034.9518 1083911.7865 188372.5159 319171.3443 33505.8793 60402.5638 51167.9548 146946.3422 1861989.425 84391.581 62995.5529 190856.1267 67973.5919 67973.5919 50394.1861 131877.0318 46849.9251 72182.8321 101773.5551 60545.654 233791.4025 39139.0823 93775.6269 48609.7118 99132.3877 62975.1317 99089.8102 47632.8904 53741.8293 38883.4995 35283.898 75018.6296 374636588 dsra Sulfur sulfite reduction NA Methanotorris formicicus Mc-S-70 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanotorris;species:Methanotorris formicicus; 5918.1755 9819.4364 2764.3223 3525.4895 34307.3721 4497.7313 4341.8453 97101.8823 7037.0199 2563.8086 2563.8086 2911.1859 6384.168 3593.7197 5849.3737 7533.4353 137293.2405 5865.8619 1962.1252 3119.408 2865.8299 2995.4501 239928467 urec Nitrogen Ammonification NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 74906.2816 23257.8789 9010.1144 88360.8299 66574.5329 15549.4616 61716.57 12208.9506 17897.7554 17813.9867 36270.5896 19305.3409 498009.347 24002.0738 27025.8677 192758.702 20321.5845 20321.5845 16489.2427 40455.4899 18205.1287 40903.5655 26354.1409 28569.5548 15013.2051 18890.2083 28971.1427 10254.1358 40455.0704 24833.0839 42237.9695 10818.882 19031.9286 15240.6285 16719.7458 22240.2598 255510429 dsra Sulfur sulfite reduction NA Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 128198.8667 14802.4651 17918.645 28517.5701 18708.7777 6129.4525 23792.8728 22056.7875 336104.9279 24319.5938 21989.743 17504.8687 291873.7082 30522.4664 26791.0582 29601.7558 19268.4115 19268.4115 23795.3664 42210.6293 33056.4121 55961.0509 81141.9718 29486.0245 13942.5011 25229.7409 95312.1158 23974.7547 49082.3572 77324.6097 26509.1001 8706.3167 36566.8792 21930.8327 43315.8054 71314.9446 340616316 cysI Sulfur Other NA Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 5299.1468 5464.5016 6666.3038 18956.3832 4727.6871 3716.1736 2195.5162 4898.6299 9392.5518 6671.8067 139718.3039 5673.5498 6743.0266 7062.0141 2509.6486 2509.6486 6743.3182 10203.6807 5773.074 11208.3151 17118.6973 12224.5789 4648.0478 4109.1086 8330.5978 9832.5462 30236.0719 15768.7524 24948.5148 2581.1725 6313.0446 15924.6489 7043.2201 9714.0294 29828669 nira Nitrogen Assimilatory N reduction NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 233499.8197 35058.676 31295.3143 36453.4422 13100.575 52092.5171 36657.0266 56900.249 49507.1665 147566.6585 61969.1541 1039918.2234 65125.6709 145373.1965 143580.6744 67153.9235 67153.9235 79835.5499 145937.6179 103756.6576 226507.2311 161014.8665 172791.3708 52504.7254 65068.6963 73503.6662 98349.3708 247144.1943 82534.9852 112140.1795 47578.7917 81762.9862 79574.9361 32288.9213 104585.953 158307489 ppk Phosphorus Polyphosphate synthesis NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 7314.5062 587402.7978 5332.8762 16494.3481 13195.2702 21864.5913 7919.5866 9978.0927 3899.9886 8206.6745 12553.9906 6436.4329 451256.5726 18434.0607 16926.3809 49364.717 19742.9939 19742.9939 5424.3794 12436.6041 6853.3577 7644.0536 9020.5784 8528.5365 3290.351 7062.4474 21067.0873 5097.7361 13489.4491 8685.4998 15357.9776 3733.4615 5895.2144 7308.4019 4859.8877 9486.1533 119391597 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 206546.662 61772.8132 145962.3662 102981.114 777685.1529 67541.2719 230807.184 204659.2188 131716.3121 140983.0761 197218.0831 135478.0687 3883714.6603 227329.8346 169968.6928 280860.1494 130257.9472 130257.9472 99257.7256 188236.1762 122891.4238 166284.7534 221809.8528 426346.6892 79055.2079 126109.7009 441011.1246 140133.9122 503186.8695 227408.4042 192765.115 92198.5762 129784.6961 166006.4709 120033.9638 107088.1098 299071641 arylest Organic Remediation Aromatics Other aromatics Ralstonia solanacearum CFBP2957 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4501.7176 9558.7551 4790.4296 2821.6177 3641.096 2251.0793 4223.5829 6577.2643 98458.7263 4839.7273 5088.0572 3408.7406 6087.4686 5321.6352 10259.9375 5674.2167 3180.907 2452.8865 6215.0682 3377.3895 10370.8842 5696.819 2730.7314 3989.4107 4977.8876 3614.7826 5470.3744 297196218 cpnc Organic Remediation Other Hydrocarbons NA Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 18890.3667 7483.5196 14098.9367 4578.3844 13236.0701 17145.2549 9828.4097 19739.5696 22488.8354 11608.4478 161072.6436 12650.2356 14355.1617 13333.4875 13337.5936 13337.5936 14910.3006 49717.5493 14912.9523 25089.1315 23568.0794 68644.9957 11789.3141 14204.3189 26852.8422 16124.8805 45737.2398 52886.09 26646.0883 11371.1556 23577.1866 24589.4682 11269.2208 23954.7939 262080950 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 21962.8611 212427.9452 7828.2598 11276.7075 10240.0896 7015.1681 49994.8069 12129.1207 15251.0597 11818.5791 277033.4593 13559.0623 11276.7799 8575.4978 12698.9618 12698.9618 33299.5388 38133.6361 33497.6191 11935.1751 28706.8747 49021.0967 22259.4553 11839.846 19943.5535 24173.2369 71044.9838 15202.565 25261.9718 8307.3287 16404.8662 36805.7266 19909.9373 19793.2502 374348834 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 43580.3769 12403.1958 24167.7074 55340.7244 4094.89 12114.7604 14461.4852 76492.6009 21569.6186 140543.8079 17188.6663 1086855.1644 30405.1697 56512.2309 26448.697 12371.8314 12371.8314 10648.643 25832.548 13453.8756 25985.6781 360686.7248 56061.9362 176041.1526 22272.1177 27819.4221 53646.5358 44682.1886 25757.2201 38103.0132 11800.7286 36854.0432 18713.9578 32070.8334 36289.6755 193870818 nitrate_reductase Nitrogen N Assimilation NA Chlorella vulgaris superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Chlorella; 70218.7948 17931.8781 13044.6448 72443.0692 44845.6667 11262.2075 34360.5667 32098.3233 12567.9146 37209.5293 62744.2894 53540.5116 470935.1666 26428.946 53442.8092 25794.7115 27388.6404 27388.6404 99383.1949 40659.8329 68235.2178 46118.3592 80476.5044 40880.4712 23380.247 17265.5837 30898.0971 28149.8574 60234.8745 30412.4021 45253.7088 18462.8448 234457.6184 28377.127 24836.2916 40447.3692 197626310 pcpb Organic Remediation Herbicides related compound NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 12165.8049 22412.6757 4391.7198 4935.0355 43218.4562 14133.2216 18480.1094 94220.9197 36890.682 13900.66 15453.41 7841.7258 7841.7258 4685.2676 7853.2081 8626.5764 11037.3142 53977.3284 4213.9832 24004.5917 12621.6874 6548.2599 9016.0408 29054.759 15142.3975 5405.4548 10478.0916 11855.1277 6573214 nitrate_reductase Nitrogen N Assimilation NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 6033.5633 22466.4399 25814.2705 8979.3641 18142.0001 9526.8784 44029.9807 6549.2992 18379.1985 11841.7479 322719.6813 13571.9622 32429.6112 25936.3518 23431.8411 23431.8411 12286.5975 28801.7795 12699.3502 17167.6697 13750.1117 21998.6156 16629.6507 11535.2852 10888.1422 16335.3453 46165.9094 22618.5602 16185.1796 20329.6301 30396.2911 37903.3696 232083.9325 14513.6086 400533989 linb Organic Remediation Pesticides related compound NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 21284.6644 4286.2173 6254.39 14725.7747 3385.7913 3057.5197 5735.3562 1892.5163 1892.5163 4080.7278 3820.5683 3728.2888 2298.9588 8152.2381 6961.1552 4262.0573 2770.0795 4700.4546 74055676 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 66436.8546 12726.5153 12058.7037 23724.7301 225174.7945 63371.7276 13227.1916 118632.6925 170840.8915 37451.7842 56351.2505 73312.6263 517344.5362 28787.1407 287445.1138 139029.8481 40365.2737 40365.2737 27227.4548 70076.5868 49829.6474 25081.4675 125600.9531 29313.3671 28104.1355 34826.2358 122034.8155 118339.6258 209103.7087 90140.8295 194267.7521 136527.0787 32542.3879 47588.5149 77149.4733 38299.3198 373956837 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 6681.4293 10490.5877 6230.112 7987.8619 5410.2502 6077.98 3784.0939 5459.0236 2679.5344 108005.8934 5379.5161 5276.593 2356.7333 2356.7333 4939.1794 12236.7538 5840.9751 12300.2286 4970.4432 4625.2455 2068.8841 3298.4262 8751.3978 4074.8161 14614.4942 5255.2017 11195.7311 2475.2545 3882.9011 4708.1787 4132.7125 5394.3407 422314091 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 43324.0411 148976.8042 19509.6287 273613.4163 27751.7555 29089.8789 42915.4661 36513.156 38756.6715 65648.0343 48368.7035 654513.3714 59126.0584 53035.4949 151712.6898 40905.5415 40905.5415 36766.0748 76479.3063 32259.3578 123048.7911 76255.0537 42951.8616 27360.5523 40174.5477 63082.7322 35046.6703 113766.9262 50615.2773 48588.6481 225529.7131 54328.276 48457.0539 31323.0696 44235.323 349583571 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7339.0157 2639.777 2224.4577 4402.961 3497.0103 3785.125 6073.0428 4066.0231 5580.0005 17246.2521 3057.4307 6477.253 4320.4458 5321.9797 2805.5809 3562.4052 4120.6247 2801.5934 212685126 dmsa Organic Remediation Others NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 6209.2517 13850.4497 4240.7452 42235.552 2594.8818 8541.8844 4449.5913 2310.4525 69506.1384 6120.2584 10636.6466 39598.4543 8992.1075 8992.1075 6557.696 4807.3279 16872.2422 2010.2112 4102.4854 8621.0488 7392.76 13773.3119 4956.699 7935.5043 3528.6728 2660.7598 6008.3659 2581.1433 106763197 urec Nitrogen Ammonification NA Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 5327.6626 9493.5157 94860.1441 10391.7211 8445.7428 6493.4654 10054.7311 2683.3746 5749.5196 388008057 nitro Organic Remediation Others NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 18843.987 31202.8217 5469.6489 8368.5252 4039.5953 4373.3276 7860.699 9224.8512 20023.7392 23321.2631 86146.0827 7254.9392 7426.0896 6219.7224 16562.052 16562.052 4337.896 44736.4162 6765.8587 10200.6284 9520.3191 9340.134 5936.858 11325.6346 21501.9701 8751.0816 28707.7641 29311.692 10429.7791 4323.3926 7544.3044 13714.0301 7947.2744 10838.0134 72394883 nifh Nitrogen Nitrogen fixation NA Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 7044.3001 16271.5779 6687.1498 2504.1086 4236.3277 6170.5549 3295.8278 126425.9129 6473.9835 6867.1642 2700.5689 2700.5689 6226.8983 8293.5419 7542.0748 6362.8604 7228.9261 10396.3407 2573.6477 3729.4655 10718.8475 3808.8865 13178.7827 7956.061 9279.177 2686.7168 4244.4336 4650.4757 3457.0327 10254.14 154509443 mer Metal Homeostasis Mercury Detoxification Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 15055.6936 11029.8131 14064.9663 12488.9397 27397.7546 7945.7646 11229.6101 4812.1524 10481.7149 32159.7445 12225.5772 555271.6885 14686.5444 11410.0535 219172.0993 33858.7793 33858.7793 10856.2987 19096.6531 12646.2297 8733.711 24957.0398 22788.6925 7854.9784 8294.1211 22188.8861 18040.851 25721.637 18635.1656 24979.4237 9011.6677 12084.5047 12798.3945 9246.0732 19812.3171 209501667 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 30219.1991 6764.804 3546.3411 6093.0603 5469.4042 4217.56 43746.4504 4110.849 4489.552 4489.552 14360.7454 11245.7842 6687.6938 34768.573 7590.5019 2669.9927 7793.9173 17086.0355 11533.9547 7863.3009 83030.5788 5459.0781 6240.6995 3913.8067 2585.363 12214.1781 386849856 alkb Organic Remediation Other Hydrocarbons NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 48365.0601 8788.3772 332467.9264 18985.252 11020.9788 52834.5161 39375.5933 10337.595 10990.3732 30219.2075 26937.3141 357151.4129 31288.3099 57068.9349 14991.782 20110.5174 20110.5174 15364.4852 20599.045 15814.0139 19318.6015 30453.3032 14837.5005 11091.2817 24264.7946 27159.2138 13943.0415 56674.9522 23371.9594 24261.7133 12666.7615 14130.73 19217.9981 13970.5906 29982.3474 397726430 tfda Organic Remediation Aromatics Chlorinated aromatics Sphingobium sp. AP49 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 6965.6405 56082.6201 2144.1746 7641.0406 3401.6926 4739.6771 9624.7789 3324.2894 105225.1967 8361.5521 32185.6001 4185.3839 2285.1371 2285.1371 6247.0724 11278.1576 6552.2486 13788.1651 24982.9433 3278.9952 2600.7805 5077.9483 4395.6696 14427.2541 6800.5754 17858.7168 5891.1857 7531.9472 5910.0537 3875.072 7311.1425 347002072 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 18567.3584 6165.1128 5656.3479 13961.746 5100.9384 12163.5088 26636.9942 6125.9433 11683.1265 15529.6792 14112.6903 157538.6375 9097.7426 12787.5179 9488.2217 5477.1166 5477.1166 11241.2282 14518.6139 12988.0951 7725.6182 14541.5799 14450.0493 6103.5275 4472.5402 23496.4348 10267.771 28001.3005 11352.2603 14169.3947 7031.6339 7597.3649 15632.5353 6124.0947 29163.846 340787620 arylest Organic Remediation Aromatics Other aromatics Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 12251.0613 13125.4736 8605.885 13317.2217 3408.7203 12766.2255 7587.1092 81377.602 4134.2243 8689.0663 12943.4072 3885.6192 3885.6192 3697.3687 7614.623 6874.5634 7126.6797 5063.1501 3540.0896 4883.9296 9868.4289 3062.6513 10097.2036 38076.8007 6253.577 3028.3453 4082.8335 6284.441 5828.3726 422314329 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4733.9682 18540.2574 72487.6403 3959.4705 9486.0665 5241.3405 5198.1426 5708.8648 6904.7451 355392428 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium pseudotuberculosis 1/06-A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 13719.5991 6217.0748 11167.3578 35998.9746 6663.1869 83090.8635 6886.9926 15018.3975 10071.3351 10720.9874 18401.9039 234391.8306 16122.8865 22589.2454 13719.8359 11485.507 11485.507 8608.1505 16762.8487 11738.3385 20608.4736 12484.2714 8459.5382 4348.9698 7446.8379 15237.0899 6277.8034 27537.1067 12662.0685 31440.3377 6418.4477 12465.6128 15790.2963 7273.6078 14166.7137 14039640 nirk Nitrogen Denitrification NA Nitrosomonas sp. C-113a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas marina; 47898.4144 8736.2782 74065.2718 3863.7978 3374.6508 6038.2791 4188.4601 4754.6742 4941.5155 3244.6273 2427.8695 5212.7761 5687.9893 2937.8493 2968.8572 3483.8361 2303.6217 260650933 pme Carbon Cycling Carbon degradation Pectin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 23769.0514 1294729.4505 11567.5775 9257.0216 12064.3422 9357.9812 20452.6106 8557.9401 16864.1467 21393.2379 19667.2415 259420.6549 14696.0998 26481.7223 16500.4167 9816.7202 9816.7202 12115.2094 38475.4175 14617.9392 17591.5724 87753.9585 40109.5708 10329.7601 9735.8109 18987.7255 16775.3411 62083.9207 17729.293 26791.8892 10191.1851 15427.1409 14735.3621 15455.2061 22858.2374 119817911 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 12956.525 6823.3243 8350.5885 12488.9301 4401.0624 7105.489 9527.6759 5293.8985 10542.5816 13207.8405 6602.1783 341910.0109 20021.1691 9338.1825 10782.1566 8337.2649 8337.2649 6810.6809 32307.3306 13709.2904 11831.9558 17213.1041 39016.0518 8424.6873 7907.5034 33306.7103 6558.902 26723.958 6679.2155 27597.1693 7307.6315 9520.2693 9088.4682 6664.9126 136991.1137 92112457 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 20275.3584 7353.4575 7923.2028 4894.8865 10584.7652 3483.7522 6086.1402 8371.5286 18820.8855 160735.4115 8608.4525 17572.5127 8403.0676 5630.7521 5630.7521 4906.5826 23620.3905 7691.6061 51749.6888 18490.0655 6886.6839 3949.1786 10124.8059 11403.6663 12497.8691 38337.9384 8782.9166 11716.3678 10177.7536 8356.9939 7278.2443 4870.4933 5787.8478 150036084 soxY Sulfur Sulfur Oxidation NA Rhodothalassium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodothalassium; 78819.2977 6224.3462 8573.765 7020.4296 18365.5223 10375.8308 7030.2803 10654.3182 13223.762 10983.5965 192615.8612 10783.602 16478.4244 13998.1122 8048.578 8048.578 9217.2278 47001.9877 20054.2392 19332.3696 24857.6123 19389.5737 7552.4509 12152.5825 21124.0203 10580.4871 40818.0389 7772.0879 20625.401 6938.6193 13736.713 137172.5805 10419.8162 17398.1576 260937595 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 60303.9021 30229.4999 198060.0577 32078.3554 65931.8356 606208.9513 86829.5621 74161.3357 27882.707 46745.1789 65705.1874 77058.3695 989398.9557 52348.9068 61084.6012 54123.7097 39287.6686 39287.6686 26800.6991 73581.0687 43370.2884 246139.4562 85200.404 63778.4129 22642.5803 28720.1497 59701.5922 61761.1295 122419.6909 59995.3463 169843.9181 23133.227 60400.654 42626.4503 31880.1136 76845.3581 59892268 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 21709.0567 54699.7367 11075.6434 21163.7974 9792.0464 18883.8836 35510.7749 37865.7009 40411.5862 68836.3489 181228.9761 374895.7973 24781.3333 45021.1574 27083.5703 22036.1567 22036.1567 24956.2481 39261.4446 14594.1336 30769.0628 150493.8133 10268.7452 71798.026 30780.1827 49879.4724 38274.4246 51026.5874 60897.7377 21863.9924 16275.4969 58274.8564 37961.3686 21640.2918 49150.6426 148255520 nira Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 91269.8113 12708.7815 210011.5625 41273.4505 40437.8899 13664.9379 61835.5873 37898.3872 70357.1838 38664.3298 55715.6102 93851.1825 798245.2225 58505.8097 117212.6627 207813.6421 68205.6186 68205.6186 36148.968 122173.3877 62533.1426 68891.8754 99338.2146 107946.485 66508.708 40526.1861 82544.4756 78566.6892 142910.6117 66620.7977 92505.3762 31995.5776 90960.214 56256.3233 61990.6453 159067.7807 226188192 xylc Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 483492.6476 4686.8097 9509.3668 5066.8607 4193.8258 2895.4541 3278.7353 8259.1781 3070.5624 145772.1168 6489.7739 15681.6034 9471.7973 9471.7973 4846.4027 11014.4567 3905.0668 6364.5645 300293.91 2698.478 7855.1504 4641.4078 17555.9057 17483.8012 6525.4443 2670.9947 3977.3833 9182.0172 2235.8553 4426.7415 171852756 urec Nitrogen Ammonification NA Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 16859.4728 42252.491 15610.6656 171076.3492 5237.2367 48346.5004 14721.5343 8972.2937 14386.8063 31291.2768 41774.0674 271177.8304 29626.7234 23885.2092 44131.2242 24525.835 24525.835 85229.3629 32706.9969 65646.2512 20284.2469 29046.8599 13288.6117 13830.9744 16808.0531 18009.7576 15374.4761 34315.4289 28389.7238 122263.0379 10632.4295 19936.009 20700.6215 12748.2835 29900.7025 258558007 pcpe Organic Remediation Herbicides related compound NA Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 10084.0094 5863.1386 12681.067 10304.8653 4166.9086 5162.9598 4783.6259 9948.9584 9372.4385 57686.9463 5299.0645 8406.1071 16448.1488 18824.4741 18824.4741 26083.1466 5041.2207 29530.8293 17584.3997 6893.2482 2627.6047 8973.0408 11732.8169 8991.6779 18242.3693 19818.3453 24972.3523 2422.9117 5901.6657 12919.5954 3970.3582 21054.4817 50236433 b_lactamase Virulence Antibiotic resistance Degradation Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 369404.5952 24019.3383 345236.6946 300387.5494 115809.701 264910.1354 349260.654 595304.862 213954.691 234870.7258 553709.6938 169719.5966 6429170.2788 370660.8786 401074.2357 1032878.0982 270034.8941 270034.8941 322812.3616 194663.4308 314992.0933 455787.509 551481.7197 2100573.5076 160948.7426 213718.8403 291872.5604 235295.6116 490463.0065 329475.3577 270598.7954 253065.1289 187413.8405 221173.1842 179058.3533 316787.1547 284066326 arsc Metal Homeostasis Arsenic Detoxification Geodermatophilus obscurus DSM 43160 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Geodermatophilus;species:Geodermatophilus obscurus; 4923.3139 6669.1424 3131.7735 3907.5331 3937.0183 3937.0183 2699.0826 4024.393 5198.2281 4377.6552 315188654 amyA Carbon Cycling Carbon degradation Starch Streptococcus anginosus F0211 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus anginosus; 6445.63005 2845804.77695 732100.13965 6290.196 2394.6803 5648.90655 5088.4244 3088.8281 91122.9217 6189.2121 4760.77255 2071.55575 2071.55575 3121.7931 8499.3393 4937.5453 5038.61735 5275.2528 4560.25355 2546.8627 2874.24865 6872.3144 2567.66595 11731.7741 4579.397 6748.4591 3687.58095 5445.5275 3731.75965 4471.17625 71941.28705 304345946 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 112561.0533 13344.7489 214564.8773 26329.7792 60168.8409 16259.0452 26677.6738 59622.6415 50727.4479 42597.2653 39214.2153 68037.9315 628160.6745 268358.8392 69343.5357 118747.238 31972.1328 31972.1328 24407.6018 49094.059 34613.1845 39938.901 40879.1209 36505.3151 25107.1671 29336.0743 36398.6924 42995.134 116102.915 65051.4697 53811.5558 34625.2088 78830.0875 54852.1911 24337.0867 40707.2758 338802133 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8038.8106 46933.3384 11315.273 5828.3317 5015.31 6822.3292 6269.8009 5297.054 9800.7967 488179.7827 5724.6347 15295.4178 8572.1709 8693.2612 8693.2612 3802.7854 182605.205 7367.2526 7536.0463 40165.961 20005.0024 3997.34 5976.0219 13812.6798 9061.1579 219339.8569 13173.0175 24969.959 5628.1156 6398.7793 61098.8738 4310.8893 5842.5613 375143592 tfdb Organic Remediation Aromatics Chlorinated aromatics Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 71559.2648 42359.7547 24827.7837 40055.4422 25692.3063 13856.2225 33269.6771 27162.189 18770.4802 31731.0474 28263.754 23857.065 752242.1757 46039.7178 33700.4016 58436.3404 25444.6138 25444.6138 22393.0425 43192.6015 54713.33 35393.7447 44496.434 52948.7056 19385.955 21964.7039 39353.8394 21566.8565 59497.9665 36418.5252 51419.6249 33552.7753 22619.0646 41570.7548 18269.7642 41799.2138 229381914 cellobiase Carbon Cycling Carbon degradation Cellulose Coprobacillus sp. D7 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 10700.4666 4767.1745 11333.9248 4909.4359 14618.4205 3488.0573 9736.6294 12360.5551 6166.4492 197619.8999 12792.1266 9097.3374 6725.8187 6162.0571 6162.0571 7447.9633 14448.081 13503.9419 10286.7141 20803.1166 13483.6995 6750.892 7011.7482 17828.9993 4450.1863 18528.8235 9927.9515 12183.8378 4445.6849 8995.3595 9628.5018 6612.8482 23441.1161 212009768 amyA Carbon Cycling Carbon degradation Starch Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 21573.7206 11924.4309 15629.6389 12816.5545 51494.4919 9626.9274 14743.1335 7715.9245 18588.2759 20730.4324 12815.3667 1165418.6531 27782.0649 41613.6452 15534.9659 10137.5494 10137.5494 10686.8011 40529.5413 28180.0943 19280.0919 26081.8352 31166.4014 10970.2042 10091.7677 28251.083 11341.0221 38281.7882 20826.0899 33250.6595 10668.6073 21801.2477 13137.5905 12545.7566 30586.5832 254559345 SoxA Sulfur Sulfur Oxidation NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 159278.5826 90535.9074 71008.7712 23568.3446 85332.4264 31016.2196 30288.0889 52558.4671 23935.538 38277.6043 54858.2912 60489.257 698066.9091 49183.2222 61288.2704 86251.5553 50844.7892 50844.7892 39113.1402 75736.0407 41310.379 103219.0107 67940.2687 48515.4576 31575.477 35252.1969 42922.9534 32816.1586 143214.1866 56343.7458 74212.8425 30567.1748 41055.4161 45587.9271 38292.9309 62027.1405 29465996 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 49801.1066 43220.9143 21871.4399 32614.002 12120.7382 13587.7042 13851.7504 12486.6287 14040.8435 15649.4013 402161.3347 33965.0879 18024.4357 17363.8018 16351.3955 16351.3955 11866.8211 38160.1765 14298.7541 23314.5302 26654.79 13670.5999 9747.9678 8225.6043 30344.1805 72014.751 42806.2882 32828.6002 18527.4546 9451.3602 19695.18 15570.8206 36799.8213 18061.822 115372336 terc Metal Homeostasis Tellurium Detoxification Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7583.8974 6285.0496 11135.4333 12723.198 7301.9435 4584.8076 3906.9549 4337.0303 4035.7606 7902.6273 13428.6949 120224.6376 7035.976 8438.8396 5441.3942 12769.2512 12769.2512 7868.1452 10171.9702 6073.5061 4687.3263 5346.9771 5913.277 2969.7493 3143.6812 11142.5656 3953.3811 13330.4325 6137.9247 10610.7342 3941.2012 6306.2835 7171.1014 2107.5591 6079.4184 347738120 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 27287.6395 161229.0214 15021.7291 48734.7681 27534.509 8400.1522 15802.3676 4177.3885 166750.3021 17407.9397 13517.3818 357380.5255 33660.7667 25084.3542 71696.0712 139554.364 139554.364 12701.2681 24181.24 17918.5426 23051.1784 24847.7418 14517.3318 11471.2957 9535.2276 32284.6925 26685.1506 38192.6604 20614.6034 26894.6021 11383.6261 13504.3543 12509.7664 9036.0659 19714.7945 68135529 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11359.6222 7847.5077 11937.058 9247.2156 7562.4062 2093.4752 5662.7513 12695.6767 4068.6671 3176052.892 8934.0919 13108.8446 5354.1385 3825.4168 3825.4168 9570.0877 17323.7751 11870.3495 11697.3128 16382.6339 12568.2957 8191.2633 10129.2752 14284.4333 6175.5735 26307.2979 13807.1085 15214.5325 6238.822 6580.3612 9526.3827 10073.0376 14344.2205 94471203 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27277.9831 7467.2974 10865.4685 5763.4282 3261.1539 3403.3835 93109.0795 4022.558 3522.6687 4453.8623 3703.6293 6477.8855 31131.8453 31131.8453 4628.138 14419.1434 5929.5593 38932.702 2239.3496 4279.3497 17918.2943 5232.6928 10250.8525 5899.0443 8214.6303 3681.2903 5209.0772 5869.9655 3689.2574 8257.6519 17385484 narg Nitrogen Denitrification NA Paenibacillus sp. Lgg20.3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5424.9902 10650.8082 7913.5249 2928.8548 4232.6162 5859.1939 6644.2481 2790.3646 81252.2197 5164.7118 5556.8455 3075.8443 3075.8443 7259.2156 4721.1751 6535.3617 3508.5819 2812.4172 19941.8406 5193.3263 2721.9581 3154.9408 4595.4753 2692.5181 82349.8331 355574948 amyA Carbon Cycling Carbon degradation Starch Olsenella sp. oral taxon 809 str. F0356 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 7170.1297 1703.4079 6981.5127 2412.6604 3206.686 15733.6064 9077.0521 33752.7813 5141.0855 10544.6321 6797.1089 6797.1089 12773.7935 3996.9718 4521.1837 4998.0067 6740.0261 5490.9258 8707.6079 5487.8794 7470.6819 5949.1503 7774.5074 2787.9704 5195.8067 5151.6919 4113.6465 7526.9427 319652131 cysJ Sulfur Reduction NA Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7114.1858 4759.4196 10080.3405 5128.8761 6272.9511 5525.414 3238.8277 9270.6828 7248.7154 3667.8826 134996.749 7827.8789 7349.7709 2266.1955 2266.1955 6113.0268 13309.9771 7833.1214 4649.7113 9943.3504 12683.1451 4056.1179 4078.0054 11630.5828 3649.9301 17476.3137 4267.2633 9804.6784 5001.597 7427.5439 5524.3994 3832.8205 11626.0561 119383921 catechol Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 5503.5343 8787.7427 7144.8149 4753.0255 2535.8564 4655.3296 5237.9243 5354.4787 3359.4646 147559.3203 6500.1543 6586.0558 11950.0318 2179.87 2179.87 3743.6403 9482.6891 5345.6602 5789.7707 4016.7338 2461.4114 3551.2161 7356.2254 2768.6781 13884.662 4397.1792 9995.3628 2148.4297 3657.3322 7556.6642 3162.8198 8701.9418 334137476 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 21010.5686 8946.2274 9448.1862 10249.0861 4684.4441 17558.6684 13576.2722 6956.9182 12392.6433 24253.8662 9825.2924 260969.0028 19811.9573 13512.837 27476.9029 12312.9205 12312.9205 9234.4199 18376.3926 11225.3195 17564.7865 28030.877 22090.6973 6708.058 8167.4887 20302.9367 12457.1091 26629.9158 11097.4015 19962.1186 14813.6746 11900.1827 12312.884 7143.7851 21835.6834 55740973 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 23801.6985 163479.0983 10550.4155 7964.029 20533.2876 3338.2021 2241.5031 5202.9985 8182.7073 20482.2441 323737.135 74471.8981 13460.1371 9084.0954 17776.9868 17776.9868 4218.8358 18710.0816 7590.9186 14635.6862 15554.7261 7995.1846 4292.8267 15295.7945 6535.5609 11623.5941 36144.0413 11914.6762 18072.3146 3924.6301 7357.2042 12516.3021 9475.1026 12094.3779 330445032 cysI Sulfur Other NA Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 7497.6908 24403.1335 7528.157 50922.4328 4557.872 7954.9751 6765.1922 4156.3391 142324.4217 8711.5026 5988.5201 5302.5057 2560.9365 2560.9365 6315.1633 13231.8088 11033.0426 8868.2359 15204.8877 10023.9743 16603.1966 3827.3908 17790.8495 64565.4282 23070.6264 29555.845 11570.3231 6321.9656 5911.4638 8354.5066 6657.2737 10678.9688 73534006 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 32527.8219 30697.4129 18455.8815 36744.2344 13539.0427 19337.5479 19088.0165 25900.147 24769.0408 26438.6469 584937.2268 51476.6933 47791.6236 41873.4275 36424.2637 36424.2637 22831.9041 38962.5768 19959.0418 60099.9048 57918.3384 37398.9069 14025.7712 17591.0207 28133.3566 15001.0528 61209.5237 35278.2178 43488.4226 17822.8875 31934.9757 26488.9353 12235.4491 39722.5543 85711446 nitro Organic Remediation Others NA Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 12183.4466 22235.5521 5757.048 3699.206 65137.0264 6992.3307 6992.3307 6222.5936 3620.682 2838.0512 5753.163 3336.0681 5583.724 2314.5989 3538.8076 12743.0411 375143809 urec Nitrogen Ammonification NA Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 4747.8366 25550.0079 35797.7688 6016.5421 45900.0858 12291.9135 8240.7221 9933.4453 3850.0687 1476629.9165 22238.6453 4774.1311 11514.168 10462.236 10462.236 5024.6843 14738.2909 6378.9094 13140.1303 11918.6132 11271.1358 14295.7647 7340.7229 7733.5855 25977.4081 16720.0463 10438.8881 10531.5192 4478.4376 15835.8972 21384.0094 15673.3669 6479.3526 365264252 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 15386.4746 11317.5103 8091.3125 12818.0839 10369.8432 8630.7226 9009.7931 12231.7662 9991.9004 9199.0137 8817.7727 171617.3177 14575.9362 12932.1167 10920.3366 6448.0401 6448.0401 12108.7528 19056.1056 13985.5442 17990.0391 19336.9996 19202.1488 7928.8713 19631.7931 16084.6862 7245.1064 33851.9633 11384.9713 19290.9565 8032.8341 13509.3436 9184.5322 6878.4262 16412.98 15141383 poba Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 87047.0397 82249.2525 54985.0001 70734.5944 67146.7008 19738.4466 27669.2675 55329.3227 31915.4313 158991.2853 54585.863 87073.1797 2911087.3272 46173.1377 171696.369 149002.6015 73932.462 73932.462 56456.7583 83923.9678 39306.4503 53971.8364 114369.1984 56210.5652 45932.4237 47353.6018 44138.8447 39075.9258 135751.2716 65758.2032 68412.7497 56756.7879 47902.0464 49406.0656 164652.1481 90995.7414 359355028 b_lactamase Virulence Antibiotic resistance Degradation Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 43498.8142 20777.4572 16398.1721 20695.5483 200851.5857 39987.129 87863.8511 14872.1444 32407.5662 67666.8863 393733.1429 670101.4849 33010.2112 44120.6082 59459.7277 53266.0851 53266.0851 40878.5771 67653.5542 56230.2753 86711.7323 73413.0409 34737.7125 19828.2044 22479.7099 29599.0338 52275.2525 99505.5504 32935.4048 67106.8789 22592.4944 33814.2749 36538.3626 31426.344 27049.1406 357412723 ppx Phosphorus Polyphosphate degradation NA Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 6486.7861 8321.7226 2547.2878 3771.963 3293.1948 12263.101 3043.9296 101486.3594 6201.0511 7562.8541 4158.4612 2705.2451 2705.2451 6049.6893 10618.7675 6993.0863 9671.4583 6696.366 8982.6079 4359.4493 3938.2297 10320.8962 4627.4737 11879.3028 9288.5377 9430.2589 3120.8042 5133.0383 5302.7715 4816.1147 11504.6332 145575331 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 59035.8941 10376.6286 10144.3311 8323.771 9219.1 37661.9121 6675.714 27262.854 29735.1854 44782.5198 354097.8401 30672.8261 19954.8445 9130.0392 40937.2242 40937.2242 64762.6097 128086.8437 26134.9963 39246.9509 12207.0477 291871.7346 149319.1798 17743.3135 13131.5228 24272.1825 51022.5339 250713.7913 21727.546 24924.2725 36962.3705 19335.6206 50460.8873 42431.2351 17942394 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4896.7838 3692.0711 3917.0012 2160.3492 3766.2584 4613.8957 77969.4209 4418.863 5464.7753 2748.1695 2748.1695 3753.4689 8873.324 6472.029 6455.9669 4617.4249 2181.1595 3154.3392 8324.708 2568.3142 12412.0221 6654.0098 10887.8352 3446.4224 4769.6926 3965.2956 2557.96 5993.8075 373101361 catechol_b Organic Remediation Aromatics Other aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 15880.0734 16085.5837 10194.7608 14098.1495 75340.2411 7833.4117 19166.3418 10389.4199 26868.1334 6525.8407 208402.6672 17707.764 14392.5929 8429.2206 5865.9521 5865.9521 7811.2922 21536.6878 12404.0131 15371.9117 18556.2781 19129.0275 7254.1407 7832.6175 14083.9201 7285.3284 38093.7861 13287.4822 24109.5881 6623.9364 10356.8372 7152.2801 9670.8658 24396.9647 159485740 mg_chelatase Secondary metabolism Pigments Chlorophyll Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 51800.5583 6933.5385 19506.508 2967.9402 4618.5652 113341.1745 4727.8473 5085.6522 92750.2481 5319.2786 9166.9668 5557.7048 33890.4845 33890.4845 3640.7568 11674.9922 4784.3227 4725.7623 6304.5508 5005.6668 3567.1704 8040.5891 2828.0964 11142.651 7736.707 6702.0547 6890.3542 4081.0116 7087.2948 7481.564 8873.7055 339730437 arsc Metal Homeostasis Arsenic Detoxification Haloquadratum walsbyi C23 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 4362.2479 4650.0918 88658.2483 2863.518 2863.518 31359.4413 11901.0014 3498.8544 33119.5232 6261.5235 226347020 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12870.4059 11612.3897 4593.2662 7088.5088 14266.6648 17543.3975 7960.8213 256995.9764 9393.9766 10489.2407 12019.1629 7668.8991 7668.8991 4843.5576 13523.833 14097.5724 5413.5358 14476.0275 6084.9303 6375.4662 7388.8151 9514.8215 3991.112 18157.166 9832.0817 11568.0538 4655.6095 6538.6043 10029.5186 8863.6846 5242.0289 385676002 xylj Organic Remediation Aromatics BTEX and related aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 6783.8281 13574.8083 13300.2549 5549.3901 2356.9701 3587.1842 18703.7279 2562.1278 90337.6431 16875.7787 14232.7552 4750.1561 10830.9991 10830.9991 4551.1816 12475.4828 9400.2136 34212.4505 6153.5257 5850.8297 3454.7374 4900.2633 8869.3256 5622.801 10713.3829 19184.0802 11267.8795 9732.7723 11646.6657 13916.0781 6323.5093 11538.8947 118424473 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5015.6282 6778.3252 5128.7553 3918.7064 3172.481 2111.6423 3572.2844 6847.1723 3898.6267 128162.6879 4976.2733 5742.9531 4242.0711 3875.2748 7457.69 5422.4588 6182.5281 9232.8248 7203.906 2639.4257 11356.9279 2546.5691 11896.292 5504.3349 7135.7696 3583.2533 4946.6265 3958.398 3631.3783 10704.661 28542591 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12111.1657 4425.4653 3537.5082 5949.3781 65855.7167 15400.7409 165968.3015 5897.885 2525.1278 4954.4519 4220.8173 6632.6355 25630.7382 354570475 phn Organic Remediation Herbicides related compound NA Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 45842.1163 16541.2332 13135.9045 30164.0546 7237.2694 14837.2458 16808.9678 20238.3039 21836.8776 32538.0298 34200.9011 312772.8112 29138.1995 23698.189 121957.0849 15463.1579 15463.1579 19610.7776 43732.4447 28125.6145 19716.239 63059.3595 40717.0035 23624.2082 32311.7554 33385.1506 18394.4278 59760.4572 28247.2588 45183.0313 13529.9822 29154.116 46630.0215 47490.974 43680.637 385763664 dsra Sulfur sulfite reduction NA uncultured bacterium ws156A7 superkingdom:Bacteria; 11797.2634 7589.5751 2126.0559 5310.8623 10616.9667 4187.2918 4453.3941 80185.7759 27143.4114 4252.5531 22185.4859 2156.347 2156.347 4882.6354 13401.4323 2575.4401 3050.0023 5804.672 6022.0973 10567.5673 4229.5263 3434.6346 5180.8966 10301.8787 5566.0442 219995062 amyA Carbon Cycling Carbon degradation Starch Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 38434.1854 7440.1783 15355.8903 22278.9267 11245.0509 13359.6396 11500.4695 6977.8853 13745.9838 15825.1785 11960.4954 219168.223 15144.8182 12787.4737 12571.0894 11988.2137 11988.2137 8338.5793 25119.7547 12836.1303 12971.1508 19040.5088 12854.9199 10010.6833 8355.0666 15057.8698 10695.959 32062.4782 11049.0805 19085.511 6795.7918 10212.0002 13194.3468 11205.6128 15554.1623 119715884 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 4798.15 5949.6108 14418.6833 4340.6428 4649.3761 33604.0489 3763.2014 7498.2189 12734.3987 8955.5718 4655.408 4655.408 4066.0995 11089.7961 6327.4855 7691.8855 5570.8781 8680.2963 3681.3799 12297.0459 3178.0237 13640.7801 9056.2562 7295.7237 3264.4457 7954.9502 3847.5803 53803761 b_lactamase Virulence Antibiotic resistance Degradation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7850.2787 2598.3709 2244.6025 3535.4397 88671.5978 8007.0985 3656.0463 6561.9332 5064.1328 3853.0851 6246.6052 5131.2736 3657.7525 4465.614 2303.7555 4014.081 2293.4979 365329538 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 180420.7198 41854.4198 218046.9074 44110.7603 36346.6758 20481.8981 129416.6131 27958.5597 42065.7905 63070.9404 105735.5137 1199272.2126 60165.8953 80754.6693 332091.1933 86759.9325 86759.9325 41091.0961 154298.3962 59598.909 124610.6443 99151.3828 56887.9892 52111.8215 46885.4679 158457.2975 38468.9021 219039.3817 166201.682 119382.0167 30994.201 81009.0179 92357.7612 71556.9773 88053.5161 83840222 arsc Metal Homeostasis Arsenic Detoxification Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 24715.8267 13435.9161 6711.7706 10977.8293 6962.4691 8118.0689 3354.7759 12703.7292 12859.7771 7034.6923 145461.6701 14892.2529 12213.5894 7707.7919 6188.3159 6188.3159 9011.244 20008.7495 14372.039 44373.3641 24870.5369 52303.0171 5518.6738 6000.9605 16172.1318 5703.1755 30962.7995 17705.3695 15669.1756 11129.4441 8594.5133 17036.0873 7802.9083 12238.4396 118026212 pmoa Carbon Cycling Methane Methane oxidation bacteria endosymbiont of Bathymodiolus childressi superkingdom:Bacteria; 22189.4779 9056.4307 542504.1719 6751.75 3634.2895 3989.0681 6630.4007 5846.139 38248.3699 6547.5279 7518.8246 7518.8246 9740.3745 4902.6845 21040.4239 58952.0665 3343.0884 2873.0201 93842.705 40707.7402 43113.2125 2843.9353 5342.3625 4696.0195 2878.0374 38142.8826 109290259 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23114.9437 42203.8545 14125.5761 6920.9594 7352.9607 8736.5303 10278.4106 132372.7978 10092.5881 109647.2462 15463.6329 16499.8283 31437.0602 9195.2906 9195.2906 10326.1694 18082.9207 12654.6573 22154.3184 14412.1893 19203.466 27985.8576 17752.8555 14280.4735 9508.0504 28705.3518 12034.1641 31871.3204 10925.5969 13256.7462 35706.5266 6943.9865 16939.19 328953290 arsc Metal Homeostasis Arsenic Detoxification Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 15530.1181 7050.1913 12308.2641 12652.8181 6053.802 10140.0694 9778.2454 8761.5463 13069.8098 12756.7425 7694.7725 207306.2118 10210.9077 7733.9262 12687.832 5627.7918 5627.7918 11394.7895 18562.528 11459.8938 10239.5864 13800.313 14922.3445 6636.3505 5063.6979 12466.2897 6577.8995 5379.1091 6167.4527 15501.3841 6156.9427 10413.6649 10164.8452 6659.9214 22647.6062 27529597 dehh109 Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 20109.5488 24479.9622 212744.5709 14572.7382 7997.8883 13644.1619 8460.6871 13628.4782 25211.1351 11789.6698 25222.1777 946074.8135 12556.1504 29802.0574 17160.8621 19882.5616 19882.5616 10369.1955 24288.9241 12032.3205 32933.3041 34521.7885 25403.7406 10759.4294 8168.1644 28404.4103 10044.2088 128141.9099 29460.3054 35429.6149 9933.2262 11037.4861 25464.9362 11460.9077 22291.3077 300333195 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 5604.7074 3419.8195 6954.144 3720.8554 4743.2955 3939.5162 3042.7264 4203.6634 5943.77 4045.0204 3139.957 3139.957 3112.8795 11171.0135 6113.8756 4915.299 5952.9908 2419.0178 10369.362 16188.5985 2941.4924 11522.3823 5920.0255 3164.2974 7678.5681 4607.9325 2679.2602 5065.9814 119490142 p450aro Organic Remediation Aromatics polycyclic aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 11926.7902 6290.4239 4808.7596 5334.2103 5737.4948 4186.4301 20749.9214 6147.5159 9855.9584 133719.0462 5411.9222 21625.7668 4961.9591 9464.5883 9464.5883 4875.7976 14894.7168 11328.9538 9644.495 11689.0716 11171.1873 6815.6057 4965.1756 19556.2476 4713.571 17969.8195 17909.9455 12855.7795 6750.1676 4246.2682 7520.8509 8737.8909 167745387 chnc Organic Remediation Other Hydrocarbons NA Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 5542.056 4374.1791 3568.1891 2653.5349 3577.5565 145669.0801 6193.8708 2797.3321 8237.3637 4873.8763 5741.6837 5241.7213 5017.0836 10537.502 4753.3423 5264.0372 6416.3079 118715769 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 14222.9324 52051.0344 243740.8856 3607.0472 13065.0501 3512.0196 5055.4374 7520.7557 5300.3944 67170.2276 32657.461 7424.9913 19607.2779 32777.4582 32777.4582 10707.1578 94447.4762 7111.5367 7508.8638 10861.0796 6914.8438 11315.1647 7465.5453 19384.134 54069.6057 9130.925 10395.0245 7417.2835 11531.5285 8694.6213 256360532 alginase Carbon Cycling Carbon degradation Alginate Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 87370.2288 10229.4896 27253.4548 10476.8824 20792.0821 22668.7024 10282.2889 18910.4527 36501.7774 18282.9252 221682.9702 34554.9556 54389.3716 19433.9991 69718.4403 69718.4403 7414.8696 34732.0069 15214.2505 13635.524 17640.6255 13441.0402 6719.8058 20354.8117 30657.8537 13163.9898 19950.1879 59482.3561 32670.9309 14991.0655 15524.8024 22526.073 11026.7124 16507.859 332108650 phytase Phosphorus Phytic acid hydrolysis NA Rubrivivax benzoatilyticus JA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 130324.6439 16937.4958 58350.1614 21934.9075 271514.2061 29262.1608 74830.3106 117866.1984 193795.3453 86378.4715 143941.2351 135380.3949 1505853.24 218494.5484 127714.1401 151274.9853 121527.3858 121527.3858 185990.581 163844.0985 76306.6813 123537.653 921527.8935 122345.8366 96235.9374 111982.355 115288.6831 197165.0691 457359.7492 126877.0731 115896.3342 92378.7713 105383.8761 114941.9981 133406.9479 200100.998 72161304 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 9518.0766 9348.7797 3445586.5662 8492.3808 6898.3817 4471.1753 7000.7602 7247.9895 4793.5318 97161.3047 6517.5917 8867.3381 4674.8719 3456.3891 3456.3891 6779.9055 14209.69 10526.0297 8358.3372 9792.6457 11359.7492 3327.9778 4217.2531 11586.0237 3685.3687 21212.6188 9860.3602 11902.8927 5951.5029 8800.9882 7922.1828 4075.7979 9400.1661 3283038 silicon_transporter Metal Homeostasis Silicon Transport NA 24037.2938 39582.7886 20282.7124 13566.1563 12514.9592 10868.1363 14316.3192 54453.0614 12913.6641 48170.1046 442664.4865 33492.8681 49107.4597 20695.3864 16955.4497 16955.4497 14298.3927 42195.0321 20472.3602 10713.6076 6553.6774 29818.9348 79913.146 21887.2021 39530.0604 25288.9122 40147.2092 12429.1653 32218.5085 19709.3158 27457.6331 51271.6887 17362.6961 105872.2824 299123733 mannanase Carbon Cycling Carbon degradation Hemicellulose Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 12980.5288 4193.4578 6453.2644 6450.8442 4659.8583 10131.3475 63933.4884 4735.1559 4735.1559 4537.4757 4419.2533 33537.3581 8333.6279 3302.5197 13317.0553 3441.8585 11589.7367 3524.9072 66370.5596 350547959 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 6632.1179 5536.3192 11027.6943 4259.6617 3138.4222 2546.657 6963.0157 18580.8302 4512.9047 155590.1399 5747.602 4068.7738 7764.7086 2969.3234 2969.3234 6255.0283 14573.5692 6807.061 8014.3866 23143.5357 6232.4642 5166.6876 4835.301 10595.4479 5293.6815 20123.8051 13533.2384 16690.4191 5122.2586 7552.1111 5688.2702 4975.3926 19265.6384 269923114 B_lactamase_A Virulence Antibiotic resistance Degradation Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 44977.1053 36281.3516 59284.4243 52440.9232 5898.145 16911.7509 45815.9277 22079.196 23151.8426 37605.4005 36253.015 638945.329 51651.7608 38158.9308 30550.1598 199166.3642 199166.3642 20989.7771 53493.0793 47882.76 83032.3839 49655.2736 78721.0471 99392.5264 27444.7529 39584.6986 37972.988 455340.87 133587.4272 47458.6503 21088.9471 30878.1378 53124.6732 24751.3344 66611.8727 170747695 mer Metal Homeostasis Mercury Detoxification Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 49054.0901 215484.177 9178.4948 151464.9229 81995.3785 112300.9097 51860.8564 31043.5726 22594.6114 66728.4692 47501.9547 716696.1422 44615.3003 27923.9912 41583.954 37944.2051 37944.2051 20152.7889 68186.44 46211.3666 780779.9459 43526.2575 41014.7882 19966.3459 36586.0545 71317.7673 44153.0525 100096.0228 74429.831 165602.866 28351.6671 25965.6625 38096.8092 39573.3907 54771.4541 160917536 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7648.7348 15021.9241 18608.8452 11372.8404 5576.5642 4506.6618 5304.3309 6593.3042 10289.5025 103150.5282 9326.6423 6684.7871 10346.6223 9192.526 9192.526 5776.6476 11048.4896 7229.4697 14207.212 7385.2948 2819.8993 6645.9875 23669.8743 5884.3602 18857.0296 24673.9322 17586.3236 3637.4802 5049.8137 27637.3076 8040.7166 5988.3577 145221997 terc Metal Homeostasis Tellurium Detoxification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 4748.9321 31629.888 13309.6153 214338.5758 5749.5219 3156.9461 2524.8131 2482.3316 2284.8242 13641.6317 7087.3209 345004781 nosz Nitrogen Denitrification NA halophilic archaeon DL31 superkingdom:Archaea; 177279.1968 36876.8935 68375.3866 39285.3647 15784.3538 37045.4572 55267.6567 30321.1752 30979.0334 39785.3797 35276.6135 572373.7877 72171.4192 40853.7361 32922.8979 71300.9746 71300.9746 34139.0548 86108.4917 33265.5846 249706.0402 63103.0299 68658.4055 44011.0733 30687.8576 49295.8189 27579.5161 95435.7046 114382.0809 65372.9175 27916.7835 43440.4578 49846.2856 44973.0418 49604.9353 66963167 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8552.5085 34327.3318 3836.1111 5737.1326 23229.1963 21716.0079 8692.8009 188430.4637 92350.2823 6096.7304 3883.4001 8749.5139 8749.5139 8014.566 23753.0717 5659.4395 9204.0479 16054.9424 6998.904 4418.4666 5608.9891 6208.0968 10277.5567 36219.0413 16033.6034 13589.6574 2452.5948 8689.4037 8027.5688 4120.7209 5767.2904 338738437 TIM Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 44994.4162 14922.5528 36729.6478 94148.1908 21194.9714 5901.2002 37566.5622 27527.3257 59973.727 41413.5706 128998.9486 30650.1163 654416.1187 65204.7096 64305.603 35684.6961 26601.919 26601.919 17983.0927 122159.8448 30738.1818 44859.0349 57915.1608 40749.2068 18979.3518 34460.046 37659.8069 35361.6441 85965.7238 21486.2191 72468.2998 20794.6084 23643.7957 30687.3931 18964.0637 35886.5922 379065456 ppx Phosphorus Polyphosphate degradation NA Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 27675.4592 45779.1622 5892.9141 112249.7848 12979.6445 31818.929 22733.2887 8998.079 16773.9185 33922.6506 30091.6141 471812.1605 15615.3038 25306.4766 92662.5171 16922.4858 16922.4858 14734.8043 28895.1658 16509.5604 38954.0985 71016.2191 73128.9701 13841.5593 66201.0332 26079.887 15012.8261 50025.7857 36689.1866 46097.1076 30133.9134 27398.5024 73032.6003 20029.9528 13517.2072 26986213 soxY Sulfur Sulfur Oxidation NA Thiomicrospira crunogena superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 5715.2477 7097.5475 17945.2497 3343.9397 3801.9479 6394.84635 73648.2488 5526.596 2297.0404 2297.0404 9985.1972 9632.4637 6830.4445 2907.0163 9667.1972 3032.0245 15050.453 6891.1242 8908.1685 2753.44945 4740.6539 4241.9358 3219.1341 357590336 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 11213.5758 9279.8228 5010.193 56064.7081 28833.0122 3955.7977 6102.3523 4885.6442 12962.9067 10600.226 10925.6091 144502.8274 7902.2691 28474.9971 21859.2644 16128.259 16128.259 8279.7972 13665.9709 6988.5697 23319.6101 10567.4148 9128.5341 3987.9462 4802.1101 18869.161 4374.4087 23352.7752 16960.697 13462.047 6464.9309 8130.2587 10867.5828 4390.7002 6757.6792 268679714 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 23824.6045 5934.5506 4766.5813 5369.1045 3840.005 3377.0298 5378.5769 6207.2311 12588.9666 103543.8194 5418.6004 5805.9909 40724.5746 3430.5587 3430.5587 15744.2444 12041.8089 18340.8461 151281.1458 5829.2979 4626.4373 24898.7905 15593.0172 17485.7162 23648.7569 6120.057 94478.8496 20536.0978 7279.7662 20391.9345 6298.5244 16011.3862 85709563 B_lactamase_A Virulence Antibiotic resistance Degradation Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 8108.6978 2268.6197 4370.5502 4492.7429 5249.4123 4854.5951 57569.7758 39139.2444 9834.5905 3410.554 3410.554 2499.0131 8512.9259 4253.6838 6299.2598 5369.8199 4888.1299 2572.9124 5707.0342 6745.3923 2216.3368 12536.3209 6769.0754 5589.5436 4392.5776 3581.3586 5537.7709 7514.7437 259346287 poba Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8837.5305 5475.2461 11811.1499 12610.7692 19994.8725 31067.4481 9181.899 7930.031 18643.3145 12511.3151 389861.554 10547.2135 26597.6317 9697.7087 14491.3596 14491.3596 14657.2698 20484.8368 13531.7505 18816.659 28352.661 14400.2052 6125.3942 9313.0843 17733.9133 27178.4006 25929.7053 24232.3172 19021.604 12396.5499 11212.6016 17827.8604 26342.6192 15844.3868 157406625 chnb Organic Remediation Other Hydrocarbons NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 19170.0375 15858.1527 6288.9092 16163.0869 83650.8758 61587.7427 8564.9955 53236.1126 27569.3197 93415.3813 49123.3625 77552.809 3454459.6657 89306.2942 77641.5062 73126.788 46947.8795 46947.8795 93269.287 125844.3719 45661.6963 14120.4799 33567.8152 67488.7074 26439.4788 52866.9945 167087.9086 50703.276 280912.2324 167003.103 122342.6455 65579.9914 53113.5854 136748.4047 11757.5943 33432.1239 313158757 amyA Carbon Cycling Carbon degradation Starch Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 9408.1241 6779.7826 4367.2014 9944.4591 5865.1311 7309.9691 4577.9906 10738.0354 11419.5707 9114.383 201821.4475 12405.9896 7533.5202 3920.5284 4225.8676 4225.8676 5620.7211 16398.8246 9268.7511 10374.6076 13357.1058 14885.5312 6075.3782 58491.4714 11609.3255 4896.7558 26330.2607 8102.9883 13193.9436 5428.0611 7537.5989 7426.4566 13936.0255 12741.9598 292560793 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6144.1576 5358.325 22051.5377 6446.2039 5322.0073 3903.1271 2270.5746 4596.5722 5889.0681 2786.9967 55227.3162 6478.6825 4489.1566 4899.0544 3434.4239 3434.4239 3530.7526 13889.253 6706.6624 6014.4977 3941.3344 8311.7624 4340.6774 3773.6531 8874.1209 3400.0861 17232.5697 9688.3105 10185.6422 3578.806 4058.3704 4564.7605 2764.494 7142.8065 328543951 aoxb Metal Homeostasis Arsenic Detoxification Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 22657.7231 6902.4377 4715.7249 24466.8937 8078.5494 5488.9531 20549.2082 17826.6883 97404.3899 11147.9039 27044.0223 331610.8188 20401.4166 16064.5798 34618.3829 28828.8126 28828.8126 13668.5479 29745.9295 7489.6423 233951.2487 45810.0286 14607.6837 24489.9723 27230.9628 13911.9746 11128.9184 18126.2678 10069.0177 28681.9115 11860.3559 15329.9596 28193.2746 7772.5917 62870.7675 310782068 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 4744.2162 258603161 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 24098.1991 18125.9218 9088.0356 11974.245 21157.5175 10992.4611 57876.4282 2137.6934 6560.9196 13156.216 32488.0733 337529.6546 19257.1179 16797.6956 10735.741 15871.7964 15871.7964 5861.0829 17467.5149 9868.0956 14741.7858 13605.9504 13686.9363 20096.4094 8185.8886 9785.2226 13159.6808 18541.9572 4578.5003 10848.3551 8697.4224 9039.6033 10328.4847 11178.9334 11087.9172 333442777 fccab Sulfur Sulfide Oxidation NA Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 25754.3815 12132.8975 27854.871 7730.2328 19044.3051 15087.4508 12903.5026 17613.5161 17405.1858 21876.0695 15819.3523 377944.1183 20235.2261 48125.2451 20833.5395 10447.7153 10447.7153 12301.7177 36190.8183 18358.2203 25532.1155 33479.1851 27469.2601 12460.1835 18034.8365 39923.1355 9463.226 29642.2099 17353.5882 24424.6089 10435.0141 12725.8248 16214.3384 13258.8971 30983.7908 307129095 alginase Carbon Cycling Carbon degradation Alginate Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 41143.28 33350.399 13140.2145 21644.9556 11965.202 45961.7959 45552.9622 26039.0898 36531.7311 43182.9151 27531.4886 648835.7871 46181.7038 34637.8624 41297.3967 37454.3971 37454.3971 68628.0198 53248.6611 22919.1223 22820.3012 77459.1247 31972.2503 30588.2444 40014.2703 50705.0307 37729.9632 65817.8537 34813.1449 55270.6105 16979.4678 29487.3087 36629.6158 50459.8191 44857.9189 38194441 phenol_oxidase Carbon Cycling Carbon degradation Lignin Panus rudis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Panus; 9696.7715 11180.4697 8780.8193 24894.9668 7490.1925 7901.915 4203.3541 3285.7867 6720.6865 9323.0488 14502.3501 196537.0446 7987.7968 11567.9739 8344.4654 55666.8604 55666.8604 7913.3767 12961.386 13069.5242 10770.9713 13581.6725 29721.3725 3151.0946 6326.4103 18499.3222 5566.8855 21132.1332 22701.9933 19895.338 7264.8816 6920.4273 12960.0178 6151.6981 10633.2668 157285620 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 10113.065 6988.181 11320.2028 4749.5344 5965.5169 3935.9318 4470.2892 8250.012 7414.5081 142551.0267 7580.1387 16455.6497 14270.0826 5245.7068 5245.7068 5460.9681 10024.8699 7799.9418 8131.5629 11799.4015 11587.7018 3974.9329 7397.4974 10100.0912 3816.8744 15886.9771 5130.762 20140.3287 3298.5332 7500.4015 4496.0154 3983.6968 9948.37 311324423 rgh Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 10115.6077 15882.4839 5855.1936 6025.3105 70093.7128 2790.7101 2790.7101 5191.2621 3197.0954 2373.7377 15674.4624 3547.7144 3245.9782 3860.3631 158114234 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 23077.1337 6084.642 5741.838 4398.3898 5675.3023 5825.556 7545.7768 3855.1677 181837.5885 6895.7917 8496.6837 4258.3143 6332.2045 6332.2045 6001.1168 10586.2407 6684.5688 5740.0279 17639.3824 31264.8109 10503.1402 5112.4422 13101.6981 5336.4768 24164.6522 8963.1413 45006.2406 4486.2983 8407.3655 11155.1817 7068.6544 11357.1615 222354304 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 11506.2597 4844.1731 7039.4594 5973.0706 14159.4673 7137.4185 4919.1626 12666.5964 10175.337 5396.5269 189853.1084 9359.9136 8950.6179 9591.3385 5871.6679 5871.6679 4978.3168 15128.1265 9859.609 10497.5985 14039.3326 11673.4127 4818.2215 6990.206 10144.291 5980.2457 20961.3543 9507.0867 11932.4089 7098.1935 9924.8648 52972.428 14055.7253 6970.7416 167350382 cysJ Sulfur Reduction NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 8047.4797 6440.4321 29432.0502 3561.0994 5393.4782 7768.6189 6327.5154 7821.5499 621313.2749 10839.8286 7427.6557 14064.0537 11019.9604 11019.9604 4510.792 10418.2274 15200.513 6521.1854 6860.4518 9566.1693 4641.4408 3994.8477 16971.7661 3621.5227 22288.6878 11859.5099 16684.9862 4689.4543 6783.1895 6252.6055 4257.2703 7171.6112 399021994 poba Organic Remediation Aromatics Aromatic carboxylic acid Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 4631.0951 2607.8442 356702.0223 5815.3776 7159.126 86980.3401 4008.3177 9603.5568 4057.9214 11842.7095 6821.5795 10775.3594 17892.8856 6972.3834 10098.2474 4459.9518 3540.0848 3063.1559 5188.0163 7074.2393 206677616 vana Carbon Cycling Carbon degradation Vanillin/Lignin Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7205.1658 5532.936 8567.6343 3345.1535 5185.3857 24871.5472 13702.3836 7012.0897 6755.1343 117362.8897 12773.5689 6005.4935 7288.0582 12930.8564 12930.8564 3100.1836 14844.2397 5982.4315 3932.919 11075.7972 8507.7811 7066.7918 3731.5987 14528.9542 3002.4493 27011.4615 9238.9084 9758.2488 4513.5604 6336.1585 9093.5663 6764.4123 7747.4426 328879678 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 14105.0403 5384.3272 4955.9546 223585981 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30225.9688 9771.6725 10142.5866 20230.7513 225048.2869 13779.5701 20861.5157 12756.8822 10643.7296 20528.0497 7632.105 532664.2659 17897.2752 43357.1806 24016.8317 12022.9106 12022.9106 15249.6693 51907.804 13906.876 13151.0524 1001776.2958 19346.727 6723.1687 17582.2285 19612.2407 22842.3038 141189.1961 23167.5402 58888.2567 10751.2007 25291.6897 28782.6924 13341.7668 22589.8798 28556672 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 14803.0036 79338.252 28787.1304 13145.0277 75409.6532 8369.6371 10097.7314 19706.205 10322.3084 7395.6054 9297.4749 15121.937 263160.2539 31663.2438 19751.7169 13242.6891 10644.5985 10644.5985 8691.2967 18326.9038 8757.8259 10758.6233 17661.6771 10986.756 7982.0343 5750.4825 9988.8273 9899.0369 34212.1216 15140.7937 53840.8756 8496.6809 10886.2683 10680.316 5757.4563 12749.0075 41349577 narg Nitrogen Denitrification NA Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 22852.9282 17127.3075 8089.4403 3005.9302 2741.9497 2144.7502 5347.0771 13327.017 12039.4521 92233.9063 7405.5874 12054.6067 6671.5857 3981.043 3981.043 13371.1722 38513.3093 9945.0937 107097.3409 8322.8511 4503.9777 6682.9542 7571.665 11011.7833 3189.8712 23705.4836 8965.747 22580.8882 6649.329 28671.536 15679.9324 4805.7307 10626.4908 169760229 atzb Organic Remediation Herbicides related compound NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 30653.089 325466.686 23116.8641 14019 15067.4598 9463.6853 15576.6652 3127.8408 7845.6519 10611.423 19250.0683 425475.065 33479.3119 27075.4458 58277.1732 25580.4034 25580.4034 42134.0562 20849.0556 9047.4973 12283.6382 8332.8562 27375.5718 7997.3173 23374.6532 27453.0487 25186.5637 35233.1455 13079.3639 20759.2666 7580.9038 10814.6678 28490.8548 22635.7789 17655.5146 237746801 amyA Carbon Cycling Carbon degradation Starch Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 9714.3122 9113.4134 7180.809 49735.4034 6459.4725 5994.9587 41001.0853 5466.3332 15098.6384 15308.2804 9496.7009 398868.1856 28570.6597 20683.6126 12111.0236 17760.7265 17760.7265 10624.356 23490.5461 26065.4347 11360.4036 1382985.6181 14428.9967 6606.8608 104605.8022 21383.0657 13266.5795 39688.4653 20966.6967 22570.3984 9503.0113 12973.0053 15647.3138 17874.0656 24294.4868 403235636 cpna Organic Remediation Other Hydrocarbons NA Bacillus sp. 10403023 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12909.6209 3022766.6426 822869.9167 6113.2942 365226.3681 119116052 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12704.7753 37536.459 630009.4618 13739.1083 7454.9086 12016.5849 5217.8886 5725.9693 10056.3317 15578.9098 167779.4732 7407.9734 13378.4291 40967.2965 16693.5014 16693.5014 4460.6228 15787.9089 12975.7866 9599.8191 39652.4322 36779.7551 15266.4457 6554.3759 13565.5581 23372.6821 29535.4609 13028.196 14516.3577 20812.3527 11097.9699 7352.6053 8227.9845 12753.5237 333936747 ara Carbon Cycling Carbon degradation Hemicellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 11950.0871 7286.553 32464.5085 16173.4353 10780.5314 9477.1328 10437.4208 19351.3396 6877.8149 448958.1163 16113.9908 17325.9707 10464.2854 10304.4669 10304.4669 13801.1928 24191.7745 17573.2582 19025.9013 15974.3754 24785.5129 7740.6459 9639.9004 15219.0048 10531.8993 28267.3215 14353.6752 24099.5737 9496.5284 11061.0513 25544.743 21635.9772 15866.6729 160427167 rgl Carbon Cycling Carbon degradation Pectin Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 5197.99 7648.9786 9779.6229 7630.8042 3460.3976 2822.6764 4743.4892 2874.5856 8828.666 2430.5843 2430.5843 2765.7031 9443.4545 6694.5736 8006.8025 5664.5316 3926.3035 8484.3219 5606.1367 5248.2228 2150.4765 3296.6363 3973.857 2325.2346 5167.4804 308179071 catechol Organic Remediation Aromatics Other aromatics Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 4399.6354 4987.6307 4948.3512 24440.5733 4977.3327 3907.5009 4428.4686 6074.6815 8591.8445 4540.8566 2782.3137 3405.3647 4505.1533 2450.9216 71402612 narb Nitrogen Assimilatory N reduction NA Lyngbya aestuarii PCC 7419 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya aestuarii; 62483.7343 79275.4576 25351.2294 57015.6291 9210.9577 22993.0281 16924.6296 24617.6375 35506.3774 24667.789 25180.4847 882064.6895 112016.8212 44188.1319 25256.4157 30362.7528 30362.7528 87779.794 41565.8032 16069.4618 82362.8925 58142.5082 29108.6291 20207.7462 24927.0982 30599.6563 13598.2171 63695.1065 11984.8833 50006.5585 17539.256 32070.7737 30261.5311 26498.2473 34347.6089 116013350 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9333.4006 432261.6337 118951.1865 3699.0863 3757.1204 4974.0477 8519.6366 4377.639 94476.2041 6394.5715 5481.1538 6576.4933 3424.2164 3424.2164 7550.9532 10503.4798 6302.6867 6871.0124 8011.8596 7847.361 6999.0071 3955.7346 13034.0583 5142.7799 15032.4224 6739.4372 8403.703 3955.0488 5713.4135 4356.2057 3306.2089 8075.3106 383770513 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13864.518 3085.9524 5533.3055 4765.9877 3163.803 3885.5072 255103651 rd Organic Remediation Chlorinated solvents NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 16791.7023 7711.9109 32967.0009 52620.2725 29437.9544 17928.4702 52674.2212 16267.2319 25578.8321 65183.259 24266.5469 846062.3197 29719.983 38232.4533 92955.6271 44722.5283 44722.5283 21371.6615 50028.0711 26535.6703 32205.5222 13557.2983 11861.5436 13434.5679 34323.4584 39620.098 19260.4848 83592.8097 25113.3806 36896.2041 65322.1585 24728.1715 30683.8199 35674.1806 17819.682 345302150 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 27653.345 11209.094 22120.7257 14143.3765 13173.2376 13655.3118 9304.39 12462.3267 15269.0759 9474.0239 435270.9574 24400.1037 23094.5656 20553.9012 10668.5906 10668.5906 18164.8566 24446.3354 21997.1672 33508.7147 19871.9387 26463.0441 16988.6652 11232.5877 23728.8316 12876.4777 40580.4799 21489.1405 22795.6684 10198.8398 10461.8732 17225.0094 16943.1783 29306.6804 38233112 narg Nitrogen Denitrification NA Corynebacterium diphtheriae NCTC 13129 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 17640.7515 252798.8099 24773.7158 106498.2187 48771.4523 13826.5109 345038.0015 3942.7623 17403.7536 28690.9815 30167.9765 471684.5844 21248.7359 26366.2682 48725.6075 21774.1115 21774.1115 11175.2763 49641.7406 15557.5653 18915.2904 9981.6724 9591.2637 13324.5057 22626.9317 43801.969 21924.3258 45718.5927 42156.9227 37101.8097 13224.4076 21137.7762 18214.3466 5471.4704 26863.165 221203711 nbac Organic Remediation Aromatics Nitoaromatics Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 4209.6813 713360.3388 3998.8401 3231.8783 113011.4073 4409.102 4248.8671 2788.5527 75895.1774 6908.3131 3563.349 3858.4872 3356.5761 8440.8756 15109.0933 4097.0775 4960.9603 7514.4918 2497.8224 2614.8007 6022.1377 2349.4594 14195.4056 4061.3702 9197.6923 3006.6344 3422.9153 30457.5876 3735.6383 5309.4793 302685431 amyA Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 36290.0002 11471.507 21904.1664 36765.2406 25360.3207 9592.4427 18769.5238 53399.3007 12212.9116 16611.0861 64346.0194 38629.7591 270259.0391 30024.5121 70358.0874 31559.2251 40302.7211 40302.7211 24667.5968 36924.23 20599.9818 16564.2335 36300.3682 17684.4654 34127.9682 25066.8899 49944.5549 37567.0918 124734.9266 23896.7912 41601.5941 14158.8118 30785.5338 31895.8754 14742.8563 29317.5446 295894472 phta Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 8533.7087 33437.978 2911.4101 3878.9448 6221.6375 8183.7117 16929.1474 136971.3461 25362.0873 9735.2459 7343.5714 5436.0574 5436.0574 3409.2583 9454.5862 4659.637 8234.851 13841.43 16760.4811 3462.3662 5773.1448 9913.439 3597.3841 20343.5893 7776.8104 9190.8637 3173.7651 5477.0531 8502.1194 2801.268 15199.6589 323525193 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 137781.3775 7866.3141 5388.8396 35572.2323 5902.7275 66521.4106 55912.0948 351460.274 156901.9112 66148.6056 37071.5578 218500.2742 31347.6978 148140.4538 110860.4466 54934.0969 54934.0969 20233.4514 43832.854 32182.0824 26201.0967 85630.9125 36472.8058 25537.7076 33034.2784 29835.6215 48148.2989 132504.5472 40627.9164 337897.3019 31589.1699 58020.1957 41319.7064 31338.1527 28041.0613 262201500 limeh Carbon Cycling Carbon degradation Terpenes Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7037.8238 77559.4373 9806.7117 3240.1674 2910.6023 7639.6381 5331.3091 73309.6194 19468.643 7714.2423 24510.0812 6312.5277 6312.5277 4493.5466 8717.1693 5260.2321 4741.0302 7694.9756 8965.8453 4293.4223 6677.6168 11523.8533 7115.0294 12544.2928 8464.2948 5584.7775 6780.6479 10518.8633 39267.9175 4374.9956 8584.4928 39976535 ara Carbon Cycling Carbon degradation Hemicellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4234.5816 138787.5497 5846.9587 4041.5534 107010.0736 6830.0578 2492.4518 2492.4518 3466.6318 5812.0346 8896.1607 2685.3911 9567.2735 7409.7064 6930.6613 3910.4677 5782.9274 222543369 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 23432.7068 8735.4215 26495.9036 13714.498 12817.277 7037.3002 8381.6441 5331.6031 9580.6903 24871.1569 8237.8673 259728.6619 8986.3393 10979.1051 10784.1234 8235.7077 8235.7077 6183.5572 15532.6348 9817.4564 7085.1122 59341.5607 12967.4968 5956.3682 5168.8335 16333.4322 6606.0459 20895.9881 10941.6844 13933.0618 8124.4137 8333.2698 12043.707 5554.6033 9938.4564 296418489 amyA Carbon Cycling Carbon degradation Starch Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 56563.7935 30610.8266 31039.722 45058.8197 38470.6612 278192.2492 88748.6456 55384.8076 17053.7097 29974.2246 28435.4071 15794.7005 1482552.4787 34486.7562 33267.6911 34578.9935 20120.8917 20120.8917 28188.0237 49786.3686 25661.4848 58298.979 36896.6629 51700.1741 21482.9978 14787.0946 41504.2887 21323.8829 59868.4309 46074.8172 46411.5586 25385.846 25152.3259 18191.3156 18235.5359 53396.5849 345876450 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 7091.8133 264044.6449 21515.3026 7205.007 5889.31 13190.7852 5264.7802 32842.2824 12379.164 7523.9893 198598.7303 7023.8116 15838.195 9275.2078 7499.2757 7499.2757 5714.755 16715.3032 9955.2158 17012.29 11783.2159 31002.4126 15501.6204 9160.3124 16450.2975 7218.4172 38014.5612 12236.9353 16612.5483 4946.4339 9288.1164 10902.0371 15507.2503 19431.7538 393771237 arsc Metal Homeostasis Arsenic Detoxification Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 18984.3249 16849.1691 31306.835 9101.1667 5970.2258 8554.4445 5930.0575 21233.9872 6518.6449 168171.0704 13864.6345 9167.0591 5241.7077 6313.1841 6313.1841 15025.2003 17465.0554 14258.5098 10375.8503 15389.2292 7542.8949 8259.5765 7012.3216 17309.0082 12095.9444 17759.1821 11084.0079 21464.6049 11676.133 10517.1583 10272.8799 10433.3243 17468.7311 393217480 pcpe Organic Remediation Herbicides related compound NA Fomitiporia mediterranea MF3/22 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Hymenochaetales;family:Hymenochaetaceae;genus:Fomitiporia;species:Fomitiporia mediterranea; 31601.7344 12133.8892 20140.5228 15889.6393 16921.0459 43260.6605 21949.0606 10463.9801 21127.3844 21815.2139 10252.5486 321708.9534 62893.8617 18190.4557 26741.4217 12159.8566 12159.8566 13138.484 32464.6456 20038.1595 43103.8989 33312.8032 60516.9113 15382.0036 10540.1655 22068.1573 25501.23 35829.6887 15430.0404 51495.8217 9380.8514 12332.3363 16615.3555 12187.433 27990.4207 374667766 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 180402.1899 25010.5296 129893.6347 63564.4598 51804.991 12858.9154 42229.8727 40199.9692 53628.8326 272446.0604 197413.2059 66105.3766 806633.0149 68224.435 117788.0226 96885.8371 53795.1238 53795.1238 43470.3653 66662.3439 46077.6988 92903.8352 138006.6009 382811.5254 41779.7311 57129.0441 70487.2981 73187.1342 185328.4854 111599.048 721305.8996 50085.9307 81865.772 67886.2887 120197.6004 182028.558 386273918 cysI Sulfur Other NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 10479.5739 18146.2201 11541.1428 6559.9783 7006.2405 6401.3137 5013.3144 3276.1806 124569.3126 6523.7688 4166.3338 2788.2968 2788.2968 6038.631 10305.4528 7179.5022 8256.1675 6738.0811 11008.7905 4818.6181 3564.3547 7584.515 150952.9967 13370.8381 7689.8431 9491.5052 7792.087 3985.41 6610.1682 5733.5034 10335.2998 335333839 amie Organic Remediation Aromatics Other aromatics Helicobacter bizzozeronii CIII-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 7599.2556 5896.2364 4339.2072 9619.7074 41132.6637 6698.8566 3691.0272 14975.4776 10501.3166 5419.7817 141666.0425 9905.773 10281.206 32453.7996 18568.0757 18568.0757 4664.6984 9643.6432 6526.3706 9632.9964 8083.7192 11531.6714 8143.2076 4901.0486 12082.7213 6514.3975 35453.703 10970.3677 14848.4898 5278.437 7478.3949 7202.5416 10617.8086 23591.7773 3157562 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 23835.2864 13642.5666 10752.4078 23918.4392 18004.4799 5013.645 15135.004 14824.9846 12212.9513 19269.8504 21058.0185 21865.3039 455498.9902 24650.0252 25440.9331 17868.8275 10890.7981 10890.7981 16278.2155 35249.7567 19809.976 19697.3243 21044.3689 25351.0943 9753.7529 10958.7416 28597.4623 10424.7585 38115.8339 16980.9315 26004.0456 11121.3626 13673.3938 13588.1101 9869.2795 29493.8594 407788360 phn Organic Remediation Herbicides related compound NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 20260.7774 186414.1822 505616.2216 6739.9546 11812.0491 15316.461 8054.3208 31301.0464 49000.2013 2233897.0945 72039.9024 16317.3381 45632.3326 13374.7201 13374.7201 5514.0867 20156.7885 13804.774 39996.3396 35575.741 5606.3356 5924.6321 12204.4029 11629.9864 15392.3894 10072.9279 8609.5096 27536.4264 9177.4595 9607.1952 19574.4432 20722.3118 42466.4294 149359756 tfda Organic Remediation Aromatics Chlorinated aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6449.2604 3703.5701 4649.4116 4685.339 2931.9127 8210.0038 11847.7031 190106.0183 4983.7976 7722.8998 3244.4917 9435.2382 12652.5821 4711.9732 6006.8743 5896.668 2114.6197 3056.3384 5628.2184 4709.4326 15178.6968 9484.7648 14004.4833 4365.595 67283.594 10325.0823 6196.525 9984.0281 45386149 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 28330.8408 63013.3933 14303.0636 20086.0738 48227.4391 13304.1667 27870.5771 30210.3868 19655.6198 20690.0127 33023.116 175815.9557 37218.48 38329.4152 23568.4381 21448.2228 21448.2228 19426.6528 59432.984 15651.1933 84745.6086 65130.2549 18330.2621 24316.6415 33200.7278 119087.0973 27083.0812 62249.2227 35587.6858 58319.3524 16838.5 25483.6208 21396.5317 20270.5345 26163.0956 209963731 alkb Organic Remediation Other Hydrocarbons NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 680066.5166 125962.711 575742.4679 290773.9668 86113.1055 45766.8881 230431.0271 140949.1513 232076.8129 190254.4194 733453.0216 287347.9384 5107522.9814 393156.1584 232119.5262 272622.7599 284500.0572 284500.0572 284341.4059 568515.5801 145922.6408 360457.4579 841680.9946 134327.351 155665.6574 192384.3501 365499.0553 338890.3353 444579.4727 293487.3806 444905.509 314497.6365 192628.6957 182727.1622 214851.1468 1683411.6186 254510744 arsm Metal Homeostasis Arsenic Detoxification Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3909.1737 4106.8703 7170.9258 3834.2963 5411.7264 7274.6831 8461.0006 2519.9182 149939.0606 5504.1867 15807.0681 14801.3771 3490.1224 3490.1224 14016.1103 4767.7936 4704.4335 2817.1156 4069.755 3114.3749 111585.4538 5326.9472 7460.4455 2081.2311 5120.7544 34651.1166 5487.8458 6689.0773 212171518 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 14549.4109 12725.6021 9872.4122 38921.681 5420.5805 13580.088 13118.7733 13276.1963 11427.4292 26553.5935 10789.495 242952.935 17796.3949 15701.5651 348237.9895 11674.3466 11674.3466 11934.5532 22418.1567 18870.5608 18341.7237 45991.9209 18560.1667 12180.7864 8272.1307 21340.2563 21869.6519 38629.6523 18101.3376 21863.4463 9637.0075 12001.2918 32164.5063 11458.62 28689.0446 157960481 cysJ Sulfur Reduction NA Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 61800.9839 4332.921 5451.2835 4013.7996 3265.4425 5746.0424 6535.5935 2858.0469 74850.4482 4796.1018 11746.9009 3019.3816 3019.3816 3207.8046 14170.1861 9584.4428 12923.159 15935.1268 9431.7656 4482.5764 7888.5443 8087.3111 12657.4062 15549.182 17223.3698 6688.068 3776.0383 16956.9052 41210.9354 3437.1661 6158.7358 126236592 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 6985.4743 1931.6662 4822.307 8336.8781 2791.1505 6548.3467 8675.6453 3391.1186 2005.9067 51869934 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 25441.8311 816493.3476 40380.2955 45122.1678 101755.8427 13074.3882 94723.4307 42478.1083 8889.8341 15879.075 59504.3935 79831.2996 783422.7223 35481.754 19067.5999 35942.7549 18802.9919 18802.9919 14636.8055 33092.0636 19393.2893 10258.5743 88121.0187 17554.0328 15042.3677 23803.3106 26174.2331 24326.9116 54300.0332 44152.7689 116496.2972 19252.4397 19692.0867 10764.6695 14503.1854 26811.63 167046594 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. HanTHS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8256.5454 3697.8793 5054.0681 5653.2819 9080.0579 6172.3592 4127.7668 176274.6982 6072.6344 7019.5395 5393.0082 3404.2995 3404.2995 6093.8972 13821.4856 9759.5254 8824.378 10304.1904 9050.0103 4034.8104 3934.7831 9822.4204 4964.2901 21107.6629 11058.529 11616.3759 2434.2509 6533.2462 6741.2649 3334.2234 16139.6011 282948939 nasa Nitrogen Assimilatory N reduction NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 14361.9891 13277.5491 9129.7081 9436.3465 10974.5939 16595.9149 10220.3125 16810.2117 17091.0421 16127.6229 307320.2046 26255.8559 17441.5313 14017.0272 18987.5552 18987.5552 12217.2447 24217.4569 17069.6423 17040.4067 16293.1706 24734.7257 9392.7823 9215.0291 24025.4677 10592.3956 41367.0825 19000.8119 18069.0456 9534.1456 12898.4206 14433.0073 14675.0656 40194.8302 115399700 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5540.1794 3459.2485 2221.2214 3581.2268 104235.5146 37413.4902 51461.6138 6362.3182 5506.6601 40892.545 2419.36 2419.36 3010.8251 9931.002 5907.2501 17063.9602 7736.4465 4347.7596 3803.8184 5297.0362 2232.6537 10632.4263 5333.0299 7086.7195 4196.4851 72684.1606 7380.9982 3863.9743 84778325 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4552.231 322202.547 5698.8441 15523.8161 3893.3447 87840.5333 3756.9158 3040.0599 3040.0599 2665.9127 10014.5224 8669.87 20241.3094 4586.4658 4148.2104 5389.8885 1916.2883 5388.7662 116619361 amyA Carbon Cycling Carbon degradation Starch Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 43394.0912 6330.4083 18417.2399 180181.4073 6975.7708 10673.6033 5680.443 5680.443 7504.7706 4003.5728 3375.4345 17807.5629 2384.3728 3850.3827 2978.8025 350601461 urec Nitrogen Ammonification NA Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 5130.3318 30994.5684 8538.3078 5885.4569 12853.4417 8896.0176 10021.1684 4025.3939 4025.3939 4388.2896 10282.5143 8846.0027 3442.8216 3601.3667 2738.0429 2949.8381 4972.3955 2437.2952 206565052 catechol Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 9922.4774 5528.7414 10344.1604 8639.3847 11863.4366 5268.0839 16587.4443 29758.2561 6453.4241 6983.3134 13095.6619 356198.0338 8970.0452 12997.8794 29534.6903 109043.1956 109043.1956 4733.5055 54892.9393 7731.6435 9742.9167 6405.7423 11976.4197 8111.2908 19203.7046 14738.4244 18114.1627 16202.7895 25070.8263 14178.2745 8310.2349 12713.7677 14579.8571 4440.6881 18204.8164 90903279 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 716890.5276 58026.9641 539963.6632 309489.0728 1145680.1386 128887.5099 185443.3113 499126.095 313928.2492 248884.0697 544847.031 295154.0862 8144731.856 543365.2851 388882.9104 578485.4887 306195.9874 306195.9874 154108.0929 276487.079 239785.0677 272401.9517 403028.1892 526134.5312 226430.9915 241771.2601 283347.3372 211130.8555 740390.2625 540314.9748 311829.9642 400632.7896 298106.5219 307409.817 189128.2984 994934.1784 372275436 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea sp. SL1_M5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11095.6016 4803.4865 5821.9045 5060.2307 4250.3203 7570.3546 8943.774 15069.9851 191947.2481 28360.4887 10542.5019 6371.6659 3895.5131 3895.5131 5732.1274 13184.2422 8063.863 13801.6027 11495.4076 9536.3737 4979.9417 4495.6604 8831.9412 13173.7041 37447.1582 10378.709 12965.6686 4068.6125 6175.0504 8262.012 10018.6356 8827.3995 14192843 one_ring_23diox Organic Remediation Aromatics Other aromatics Porphyrobacter sanguineus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Porphyrobacter; 28631.78145 25460.8755 12958.83495 23120.06335 6422.16245 167675.77285 27145.64795 16992.94115 365094.3763 26051.69195 15283.9098 15283.9098 12392.46585 37730.05175 21015.7156 27225.1439 17755.0712 22174.80395 44623.22395 51962.50815 13746.935 18432.9072 23455.4966 19864.6976 209542700 pgk Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 359319.6376 11918.8204 351463.1992 108299.7614 132131.4281 454847.3296 583552.4052 313671.2054 247226.4144 192348.9065 164414.3993 287723.8089 3391892.1674 367064.5587 462212.7274 318553.5563 241993.1614 241993.1614 140642.033 335243.1839 125171.9406 204400.8092 248891.8934 827677.1254 203934.5582 152911.0812 151615.6094 171895.4316 498696.4935 187027.606 234978.6673 104680.6597 135653.1837 225940.3142 121203.1566 398247.3024 296122944 amyA Carbon Cycling Carbon degradation Starch Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 5894.3832 10207.3781 9770.3888 75331.1341 7545.6748 36189.3742 79835.5473 16263.6797 185912.946 11981.6695 7324.0767 14401.2424 12944.3112 12944.3112 8427.0566 24431.4804 5658.4542 5546.6352 13044.6999 10963.9584 5236.9248 5900.4442 6929.7623 8862.6098 25446.816 6973.4442 15336.3002 310933.4058 12826.5794 9215.6756 14374.2949 9306.7993 158108669 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5869.8747 1955.6755 214637.7124 7678.7596 7674.9101 7901.4911 14773.802 88843.3895 7097.6664 6184.2327 6364.2164 3779.2558 3779.2558 15967.2476 4347.5378 26191.6822 9931.5291 6199.1865 7014.1177 9471.7028 47294.6295 17414.921 8862.3575 3689.8708 6903.6056 49765.6416 12147.7203 6111.856 365901789 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7495.0309 6346.41 24386.2343 2223.9134 4830.8026 2442.0118 7770.155 9105.757 5954.5776 107734.9818 13110.1721 7597.3085 3094.36 3094.36 5658.2781 11127.4784 9114.0706 5842.6239 7245.3618 5907.7395 3404.2329 4741.8944 11215.4317 4403.1392 17012.7793 14300.9093 10936.7364 3023.2744 5057.7686 5810.3277 5834.7165 21271.6906 261250370 cysJ Sulfur Reduction NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 22177.2425 9520.4866 7330.5211 4579.7733 9682.9364 3673.2404 6875.7517 9603.3407 11454.0581 159765.4568 11545.8629 11171.4399 10884.8701 13582.4522 13582.4522 3904.6976 14209.5892 6260.0685 668689.5974 11131.5853 11701.4523 4302.6836 4656.1521 18066.7366 5251.1304 18557.4663 8730.1657 16753.1023 7642.9838 7036.3083 8500.5875 6531.1905 8561.1438 71383758 nasa Nitrogen Assimilatory N reduction NA Anabaena cylindrica PCC 7122 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena cylindrica; 6547.9555 8739.5151 4820.1619 4858.0616 3809.7542 7302.1041 7412.9111 3206.4111 158821.3551 9309.6282 7180.2372 4446.029 2997.454 2997.454 6988.3882 14179.0225 9153.6284 11991.7752 14323.6142 14546.0576 4906.1877 6106.3913 15342.631 4320.706 18170.7755 10643.0926 17201.1741 4946.3156 7135.7194 7792.8691 5472.4665 11973.0961 322693100 oxdb Organic Remediation Aromatics Nitoaromatics Metarhizium acridum CQMa 102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium acridum; 7456.5874 4752.1446 7170.327 7106.2789 5182.527 3679.1824 7389.8863 7815.9665 3654.883 238600.8896 10371.2462 7165.7363 5459.8953 4033.2985 4033.2985 6351.4997 14185.0152 8618.6715 10336.9206 12890.4409 13701.2971 4087.6832 4627.2566 10160.3195 3800.285 19150.5601 7445.8265 12367.5131 4067.8502 7364.4468 7461.5447 4334.8968 9067.7306 84510852 tktA Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 319121.6054 44882.0888 326997.7403 73801.9568 22088.8161 36200.6274 60255.5569 27562.2284 35696.5649 53062.2041 64388.2314 1543253.8588 59829.2572 63645.9177 56643.3617 59750.1874 59750.1874 29929.0457 130713.789 26326.1777 48964.5918 61552.8685 29650.4839 25668.2143 35789.0075 71191.8246 25959.5955 104866.3439 73863.4756 82353.7108 24903.5211 48133.0986 37741.3704 47121.7297 86839.9337 30526321 nitrate_reductase Nitrogen N Assimilation NA Pseudochlorella pringsheimii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Pseudochlorella; 25403.1983 17043.8604 23760.4308 19574.6245 69481.6431 10914.6014 19994.4592 229419.2891 28961.8386 19941.1276 23433.4909 13685.8981 421073.1479 39595.5546 30301.6967 25299.9864 22929.7383 22929.7383 31942.9424 29181.2539 103349.1415 1424171.2826 276902.4944 39631.5896 422607.6577 20648.4593 35053.2422 292360.856 57350.1424 22294.5241 87263.7943 388554.5721 20122.0396 26028.1743 374167.5746 556678.0421 87281133 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12336.7413 12765.9152 8659.9892 11800.1825 5440.6425 2590.2078 6618.4867 9451.4104 7548.9577 138067.8701 11131.2454 4387.8293 17573.312 15608.5398 15608.5398 5277.1617 18136.5959 9289.7797 44987.0614 8119.0403 6670.9756 4425.7285 4363.987 14061.0032 4491.781 12316.7827 18790.3018 9419.1767 7969.2629 5999.2542 5928.0902 6205.553 14950.2906 118570811 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 203451.4754 31281.8857 91450.4746 62873.2214 73579.2628 23216.8239 94875.5356 306596.4984 70246.219 151209.0492 102089.8714 104403.5874 2708876.4071 130593.7146 163926.2697 336078.2047 120033.5274 120033.5274 125189.2796 133975.5968 96669.806 185416.8016 243305.7334 115397.5657 85951.3103 111910.7764 109616.4394 143116.8195 256258.3975 238776.7351 158914.9376 95038.0688 140126.0286 164622.5313 101224.1777 133043.3954 113941017 urec Nitrogen Ammonification NA Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 10915.2243 10179.7764 23242.7941 15980.1819 50906.2009 13803.3369 11921.7363 74082.4435 10842.2118 12312.124 11678.51 342684.49 17021.2727 20123.8837 18502.5703 9725.9603 9725.9603 8280.2197 47256.8828 14328.9502 13748.6106 17931.0918 18745.7555 10742.4034 15045.9644 24226.9215 14629.49 57718.145 12638.6719 31864.6658 9125.4131 16216.9894 12328.909 7600.205 9422.1455 383776212 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 44015.4509 33738.7428 14712.14 18087.5417 5205.8811 17404.8839 123913.371 17202.3591 19967.9691 20910.3113 40009.258 176650.6076 22448.073 31331.5603 36291.4853 30330.029 30330.029 14549.6043 46139.3669 25941.3228 53273.8468 67162.6871 26299.8649 95935.7464 19306.1926 86512.4803 17409.0871 50651.6924 93100.8292 30714.7293 14193.4142 49030.281 17111.2232 20165.1576 31162.4718 297626690 terc Metal Homeostasis Tellurium Detoxification Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 33060.1371 224706.206 138811.5944 29792.6529 21334.5823 583124.7428 32645.6201 13840.5134 13609.9717 17630.4343 235795.0962 23348.2425 14827.5364 10416.5512 20142.6119 20142.6119 17097.677 22959.3434 9769.4868 28902.0736 87416.8946 14274.4632 27813.1948 18947.8846 20970.072 15554.3426 77454.009 16807.9869 36652.6695 13174.9536 18920.416 17323.921 9152.5589 30040.8752 332377346 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5963.4667 4950.3512 13354.1461 3680.7734 4821.9255 2473.7914 5690.5116 6232.7714 4872.6015 211228.3522 4983.6817 5267.5205 7066.3222 11178.7018 11178.7018 3765.737 12560.403 5789.1393 4561.8208 8262.4527 4494.6505 3221.0541 7039.0919 8329.3106 3377.7238 19224.7009 5283.6703 9529.6208 3559.0766 5074.3814 3856.6709 3675.8914 6976.8119 77176863 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. KB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 7688.3091 361076.8129 5076.6529 3994.7663 16019.0079 6265.095 3701.4647 5252.8884 211958217 linc Organic Remediation Pesticides related compound NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 12835.6807 9221.4801 9570.8615 12366.2677 13758.8552 12140.5644 10051.2997 27697.4157 162508.7451 37938.9068 9475.4807 38093.6957 8039.1584 8039.1584 9729.1831 21972.8331 12203.6245 20622.7338 13848.7098 7120.3827 8598.0863 7811.0121 13924.2402 31750.4636 41656.9278 21389.9784 18052.7718 5119.0803 18095.6874 24875.994 32833.4791 17727.312 107029134 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 19722.1908 4525.9715 27298.5371 9088.9328 27627.9242 10308.0879 14117.7382 11182.1255 19289.1868 7308.024 906568.4635 8141.519 12801.4706 5423.1897 7403.7619 7403.7619 7905.1739 13476.0101 6111.7407 88774.3968 14387.7815 2307.2974 42239.8808 18078.9709 5725.0684 24951.006 12961.0139 24497.1227 5625.0024 10619.9726 11408.6574 7616.0472 10941.9385 332637944 ppx Phosphorus Polyphosphate degradation NA Weissella cibaria KACC 11862 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella cibaria; 4831.2611 6767.1872 4560.1255 3333.4286 9167.0279 5758.8099 57728.5819 4819.6937 2026.8891 2026.8891 3802.8935 10031.2838 5694.5095 6842.0713 8276.149 8407.4328 2724.0149 4035.7995 9211.0602 2926.0264 12295.3913 5954.2936 7534.1802 3071.9544 3944.9226 4810.5741 2657.8516 7699.5727 239806527 cda Carbon Cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6991.0159 2053.0661 10903.2832 10903.2832 2647.5355 7381.5424 9271.0863 10430.9077 6204.9881 164455442 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5381.3029 2738.5731 4092.6506 2726.9567 4379.6189 5811.6716 2998.9411 5301.3281 4399.6726 10051.9418 2125.1327 2125.1327 3229.4683 6487.1343 4819.9891 5677.4931 5483.4712 20663.7387 3405.1504 4685.9539 6939.7383 2709.2904 10470.3098 7809.8552 7369.6335 2127.2635 3287.5674 2966.2213 4199.9256 6663.3967 373954711 xyla Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 16325.7563 20652.3729 9641.0703 11656.8177 21247.5912 5395.3205 22293.5934 48139.0869 13580.571 17950.3928 33952.629 14527.5644 491779.8828 29888.1938 24548.4178 52274.128 15901.1342 15901.1342 27334.3787 32455.8471 19361.4417 41223.5619 36752.9881 47436.146 22888.9289 17270.6516 29205.4591 11124.0466 47312.6508 27898.659 32307.8616 10366.4381 37600.4089 16906.3847 17948.9002 38800.352 217502071 TIM Carbon Cycling Carbon fixation Calvin cycle Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 6978.3853 8776.9333 6832.0473 3209.8221 4399.9143 5668.0512 3040.7397 4089.7149 4838.4164 14276.7097 3144.7436 11778.4151 3917.9702 6352.2007 3533.3498 5594.936 70673053 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3871.8919 4264.6526 8602.5401 5243.7934 3778.8857 2428.846 75107.3786 3770.8498 2170.3561 2170.3561 3631.6697 2458.8512 5985.914 1960.9295 7711.534 4140.8129 5628.2182 2781.7278 115360324 badh Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 48341.8104 28762.9383 16953.8421 36802.1723 24049.9596 20156.5491 47197.3753 8436.9899 15660.204 23065.3513 37662.2428 285577.1549 127268.3548 47371.9783 27082.6463 16592.9641 16592.9641 15201.4301 35255.3838 21286.6549 19749.6178 24282.0378 22467.913 11344.3973 12744.3494 58499.278 32616.1437 43500.7024 21620.9571 36045.6198 26748.9884 13315.4312 17686.2663 11034.5088 30912.8034 345008143 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 3731.7596 3061.4478 61205.7576 3239.0232 3239.0232 7014.0096 3250.4635 3470.8551 4089.753 2474.9488 374336696 endoglucanase Carbon Cycling Carbon degradation Cellulose Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 5127.4717 1838840.6505 579005.9907 370069.8077 12600.0874 7862.4454 4164.4207 6780.1067 5439.6278 2488.9736 87987.661 5253.2676 8364.6758 3967.3777 3557.96 3557.96 2722.8977 5768.1039 5365.3707 5453.6995 4320.4486 3100.5866 22045.3332 2419.3327 9162.3567 8208.4483 8190.7368 4550.1112 7911.0958 2235.8485 35311.7155 149199617 ppx Phosphorus Polyphosphate degradation NA Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 4518.6449 7634.0166 31212.1789 6160.2957 10651.1161 8616.1621 47262.2502 20118.787 4883.3739 3019.3704 293394897 nitro Organic Remediation Others NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 17975.9239 6914.969 9847.695 8281.4347 4605.533 12068.8213 5085.6034 7351.9061 14394.4701 11538.3492 247150.441 20152.3968 11972.9973 6878.4475 425809.9767 425809.9767 4992.793 17271.3921 11600.7311 12165.5407 10242.213 10690.0436 4748.5416 8358.8373 13830.8501 4552.288 22353.1038 12510.1452 15383.1698 7447.3951 8891.6037 7954.5779 4609.0149 9463.0328 422314017 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11860.5113 6840.6772 7899.9225 32024.8563 13470.2462 6388.9826 6520.2016 9360.2697 10491.4934 5331.9542 29810.2572 74247.7009 2493.2215 18914.8997 379733761 linb Organic Remediation Pesticides related compound NA Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 37407.1676 23346.7292 18976.4966 5329.7228 7777.6675 28532.4402 22929.4503 10616.531 21060.9359 13963.0815 98976.6162 13616.7821 44722.022 21750.6965 78746.2823 78746.2823 14748.249 63051.8432 14794.3427 23017.4966 24721.1814 11888.2082 14037.1693 26931.3066 96551.8861 68873.549 230667.8434 19978.1939 90345.896 8044.7199 40628.5792 32292.1313 10364.9394 13176.6083 3928775 chitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4603.9952 4635.6656 2929.5364 3536.5775 3906.3115 12041.4526 4282.5916 9604.9397 9604.9397 7271.7318 4043.8574 235026.5803 4517.9172 5334.7365 2267.4259 4491.1969 2884.7636 294627601 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas fuscans; 13090.1122 8493.5282 5410.173 6524.9428 10062.6193 9657.7402 16648.5855 39488.7645 85884.9956 23714.5542 29660.1643 5663.8195 64161.3441 64161.3441 4191.5023 17594.8722 12884.4716 4833.143 6841.9136 7831.4061 4146.0275 11017.9488 9213.773 4555.2064 19581.4517 6585.6136 9387.4184 4797.8008 6395.4202 9067.7652 4982.6847 7100.5008 325965169 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 18169.08845 19581.5403 7880.7915 3914.5785 6538.8132 34856.9123 10460.2478 15111.6053 115964.9493 11643.33435 8863.81635 5443.4062 8526.1234 8526.1234 6298.67315 10852.1811 6128.4535 9779.1834 7188.36315 16030.012 6355.2773 7482.98605 5670.1286 26046.47955 6859.07375 15723.97085 4954.0005 4906.98425 8255.6304 3283.3319 10388.0469 398198892 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16806.4293 210942.5069 8849.4086 152924.1995 8919.0718 61681.097 13674.0057 8527.2826 18774.982 24881.4455 314592.7046 12392.7569 17528.684 16816.3834 15873.9729 15873.9729 13050.9911 22560.4585 22656.0214 7977.0738 24575.6796 13662.2152 9098.7947 7838.1945 14771.8131 18428.5091 36850.6024 10385.866 26621.3275 13200.2936 14663.0917 17322.2181 17331.1158 17877.8366 113730621 poba Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 29968.6804 19846.2688 6468.4627 18454.8029 15748.7392 31880.2054 3650.841 13055.3514 11358.8311 23843.1613 136656.7137 19846.2073 12254.3155 14851.0865 11482.5894 11482.5894 34602.5259 35429.5247 15335.418 163577.8183 13366.6031 15388.8133 12011.1643 12362.1352 18092.4668 7388.8215 27041.0421 46414.5773 13775.3192 6950.7039 23188.7219 24629.9338 10277.9298 299661.9539 25900624 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio baarsii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus; 9755.4671 4376.8367 222106170 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 4731.2261 8186.585 10146.3437 4541.7426 3930.3043 9669.0907 5771.8612 97405.3911 9752.2946 6810.6181 6810.6181 3411.0934 11765.9668 6427.8408 71680.2163 7113.6919 8925.3572 5297.1658 6154.9022 8423.3972 47244.1477 19361.118 4470.3734 7561.8131 3592.9639 5654.7935 6611.439 6468.3585 7614.4764 56294812 xylanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 20979.9922 31812.1553 46953.2432 19460.1087 9311.2267 25623.3569 30171.092 8569.2031 15792.3503 17003.2022 11263.8223 484412.5111 20767.2457 17155.5051 19131.2921 9754.2647 9754.2647 15540.6569 39498.6819 21973.6064 38963.8132 68207.9038 16152.7287 9836.6093 18064.831 10780.2855 46592.6974 23296.7657 21268.0723 13148.1855 17277.5131 12872.8078 10444.3203 34108.3067 190333368 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 73964.6346 78093544 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14526.4517 5274.6638 5486.2094 5214.4086 5493.8481 6107.4878 6460.2311 11269.0911 16376.6835 4097.3077 200540.1227 10739.6944 13590.4537 5652.5531 6252.0009 6252.0009 7904.1299 15138.1746 15076.1161 12888.9888 15074.1299 15241.5129 5791.2455 7013.8957 17023.9734 8683.9321 22594.2452 12480.8801 16920.6595 6316.8516 7781.5558 9240.6247 6534.4217 22307.3788 154303741 glucoamylase Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9623.3671 1964.1811 2439.0254 7121.0988 5963.8111 15804.0925 5557.8567 2568.4292 6405.0006 302439563 xylj Organic Remediation Aromatics BTEX and related aromatics Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13062.7022 6866.5674 13844.8933 26004.9415 11052.1925 15104.2064 12090.3605 13044.8526 7816.1679 16341.4271 51262.1634 808175.2047 15425.9336 16745.0644 22996.0292 17472.9464 17472.9464 6282.5819 27781.0665 33077.2748 9278.4615 11233.0188 21920.3121 22924.5471 15327.2108 38827.0022 17516.5171 55373.3975 26086.2606 26207.9349 10676.4804 14663.198 15773.9956 13593.9041 8160.3984 323365646 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 19409.5654 12678.9961 15348.5599 5655.2154 10420.3554 72622.8408 10140.2057 20821.3805 19378.5685 18496.9137 655567.5887 13392.7591 102474.4937 48364.2094 19138.6692 19138.6692 13191.2699 42357.0952 18386.1999 8796.5952 44359.8243 12975.2303 21795.5701 27770.7801 81563.8935 37021.95 37406.7877 24002.8801 27003.5347 23241.7729 24915.1484 21498.6244 80506.6187 12800.7 84778361 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4710.2309 348593390 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 13824.6703 6595.9497 5859.5574 260942.2926 5460.4961 8638.0263 10365.5994 7679.4585 128639.3361 5717.1525 7604.775 43207.8736 11053.4933 11053.4933 3645.7797 14656.4572 6669.9808 5618.0821 7679.5258 32082.3507 6650.5319 4015.2007 6637.5427 3842.2196 16567.509 4758.3775 13609.0229 14953.3032 8514.4246 9369.6482 6686.2481 8113.6387 389864079 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 10265.7203 34069.1517 2728.8617 18273.8231 25882.7324 2818.2318 4509.1058 4745.6462 4900.9588 13943.6041 13943.6041 2560.4243 10351.435 11739.5391 9265.4917 2578.8656 4822.2519 7624.4713 2668.225 6123.9777 2094.756 258547503 nifh Nitrogen Nitrogen fixation NA uncultured organism 10676.9464 3817.5037 38391.0284 4305.6831 4803.3982 8105.8236 5219.1845 3129.7309 154782.7257 8230.7032 5166.3333 6102.119 2365.4786 2365.4786 5749.6061 12554.2155 10104.6775 9415.6131 16409.3487 8106.9049 4365.7686 4184.0455 9202.0558 3419.856 15953.9328 4677.8788 10210.8413 5261.3986 5685.9972 7717.3027 4244.4755 13838.7765 305859498 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7592.4824 5218.2546 4218.4036 3170.7373 2826.4078 3568.8117 5458.1175 16048.1685 121872.635 4106.8154 4919.9895 2935.2024 2935.2024 3457.0421 7963.2121 6435.0916 5714.4722 5307.8992 5551.6803 4858.737 4358.0546 6227.2326 4162.5524 9979.3562 4933.0241 5594.3543 4653.6101 4160.7523 4032.3417 3453.0129 9494.9844 139004122 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 18579.1242 12581.1457 41262.1561 19988.7842 14759.1685 18841.0814 26213.6078 22836.3007 21452.7335 46721.1814 15675.7877 314683.6513 36229.2186 20291.2376 20275.1365 172991.5696 172991.5696 26069.514 33276.9996 81021.9663 32820.7669 50036.0437 206090.827 17486.2128 34603.6303 42827.9511 20875.3317 61650.674 53626.7021 42465.8579 17335.2166 43166.0954 38262.1237 21947.6315 18228.0589 221727407 ara Carbon Cycling Carbon degradation Hemicellulose Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 50846.7314 68150.7501 58778.536 61085.2574 7583.84 35682.1389 111893.3492 18819.9483 34766.4445 30593.2269 22683.7717 653910.0959 43963.583 31649.5391 27604.6458 31800.7956 31800.7956 31559.4409 55404.6212 39406.1083 88413.4164 55983.293 62069.0279 21809.1688 18952.0549 42893.9516 21245.4885 70357.784 43717.1985 78817.0365 18413.4689 38406.0216 27444.732 25136.3211 60166.2941 331699733 nhh Organic Remediation Aromatics Nitoaromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 56450.4058 10082.2783 12319.8582 14448.7584 100982.9436 13871.2498 11100.9789 19273.9578 44474.1413 64271.4073 166965.8723 44447.9829 290082.1985 25184.1408 42693.2139 31667.887 40224.9975 40224.9975 21795.1027 51959.9443 21353.921 79784.9797 67466.9561 22438.5996 22404.8351 22590.6257 27057.5695 34568.3113 258904.6214 27157.4855 57567.5984 86945.1178 97030.4684 43136.7583 20119.8345 53140.747 311322160 pec_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 11909.5592 5384.5701 24204.339 9581.5305 5602.5485 39011.7551 6741.3664 7364.9675 7279.1035 16259.8807 244243.0052 13120.3496 9844.3734 15167.9708 10422.3373 10422.3373 5721.4791 20113.225 21849.5992 15910.7289 11800.198 50217.6401 7947.0315 10507.6486 25887.7538 6169.5175 22358.6708 12491.1896 25595.8296 6688.0323 11991.5602 9616.8404 8571.2523 18574.8001 70930940 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4070.5975 3225.5757 179113.8093 2684.5368 3264.8436 16777.6263 7004.3473 72397.2169 4518.3597 3813.2103 9448.1804 5848.4516 5848.4516 2907.4922 10886.6647 5219.3574 5439.5014 14152.7871 5223.8796 2997.8524 3747.0388 36332.1411 12056.7272 11188.9187 3994.4831 2954.6698 10840.9062 20834.7389 3948.0233 7947.9707 365867550 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 57494.5531 105479.7402 20987.731 134093.234 125295.8925 39195.1545 27022.2348 34765.8973 34783.738 47968.3452 91607.0039 91523.9342 2684503.611 69029.6311 104297.2232 118288.8877 98828.2736 98828.2736 28724.5049 51418.0146 51084.3916 55092.1837 92798.7346 51149.4726 29854.0425 28642.5812 73203.6784 56307.5414 169936.2985 80572.5538 78428.5659 18182.7962 54150.3615 52055.1666 22322.569 30271.9253 110589246 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 21887.2916 28760.3421 17571.5895 90943.4605 6117.8361 11781.5193 8816.7754 85822.5946 32251.1447 13223.7916 25590.9872 222788.932 16199.1455 24372.8457 31427.5201 16449.8695 16449.8695 15526.0752 28722.8796 18220.6392 13483.9615 30994.4416 16212.6255 13361.9642 18698.5657 14710.6906 7059.2095 38615.5198 19070.8952 34670.3196 13758.1904 18063.4837 15664.0565 15434.2413 18272.8386 86358696 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6033.1506 11902.6232 4608.1144 20282.8506 10034.5585 6088.3701 2594.7274 7005.4492 22056.98 9475.4271 189080.0536 9394.1153 7649.6628 8105.2793 6207.5853 6207.5853 5598.036 17217.3421 9949.3599 9093.9117 103700.2391 10255.7371 5881.2713 5673.2664 22374.2536 5746.3241 21440.134 14707.1182 28798.9038 6424.3369 8882.1552 19003.2563 5666.607 11607.7807 119673172 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 10670.8639 3221.9874 3221.9874 4263.4918 4437.2589 320528967 atza Organic Remediation Herbicides related compound NA Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 7325.2021 6184.2347 2998.7401 4215.9212 2804.9308 4533.2033 7165.8217 3234.7221 143473.579 6498.3587 4350.5695 2501.0066 2501.0066 3800.9581 8788.2122 6224.3355 4393.9199 6472.2015 6967.6733 4869.2588 3183.4515 9048.54 2337.4857 11542.7534 7356.0183 3531.8622 4621.104 4414.9586 3273.4805 5685.3179 78196632 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 111720.8825 16589.5479 196447.6637 6766.2375 6860.6713 3121.1526 11075.7984 4691.4837 6225.7787 6709.0892 3534.5572 73635.4342 7379.6617 5319.1891 5960.8994 2665.507 2665.507 7963.2512 7692.0286 7400.2153 9136.7729 8697.5048 8859.8451 8684.4358 8651.31 3756.8905 10708.6 9926.7185 4898.3461 4181.654 6657.5695 8079.2296 9907.7745 377531517 bend Organic Remediation Aromatics Aromatic carboxylic acid Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 13437.73 9077.1834 11456.3511 16866.0243 5964.9484 14417.2163 12470.791 3844.1677 11463.3301 19515.0299 9345.0244 385005.9616 12681.9881 14563.9625 25415.3346 20853.3293 20853.3293 7958.5784 28896.0798 17712.8334 21850.1006 33427.5841 17539.6267 7203.8803 6620.6497 28206.715 12734.2973 42747.5678 16186.7342 58050.5391 9445.1286 10128.7078 10764.3328 17210.6795 15209.5108 88710156 xyla Carbon Cycling Carbon degradation Hemicellulose Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 7920.0942 7190.1129 5009.6595 10088.1036 5190.1338 5362.337 8895.9557 12530.1554 5628.7252 246564.9505 14139.454 10479.5582 13339.2782 4803.0896 4803.0896 9128.4809 13418.4649 9800.6155 8695.1357 11329.9392 16744.7039 5567.6538 5181.6082 10591.403 4376.8244 6344.9068 20608.0082 11880.7698 4253.576 6314.449 6813.5241 4734.7062 13271.3683 374569385 amyA Carbon Cycling Carbon degradation Starch Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 5452.8317 6148.071 7979.6408 10914.6525 5731.4458 5617.0214 4337.456 20015.4138 8132.3006 4223.1767 190902.088 9177.9602 8832.7771 6561.7294 3493.7875 3493.7875 5606.3765 15823.0574 12142.491 11065.0582 6786.3856 21559.3093 3462.3252 5525.6219 15125.8209 4709.6948 20040.0786 9157.7353 13465.3096 115934.7563 5402.5398 5769.4799 4801.8466 13435.4609 383936317 cysJ Sulfur Reduction NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 4134.2216 21039.0744 4281.0115 10514.3239 2071.2957 14724.6357 5422.669 2925.659 77659.6051 5397.2842 3155.3642 2669.9643 2669.9643 8342.5472 5739.171 6728.1579 4310.9104 5149.718 9425.5034 3071.5664 13226.3314 5275.5703 8543.3681 2983.0561 7861.8785 5469.0211 2980.7175 8184.0832 336102148 ppx Phosphorus Polyphosphate degradation NA Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 125152.34 69677.4463 115526.2284 360997.7792 129382.3808 65382.1272 216167.7888 83814.4657 59127.0149 131695.286 146451.0471 68273.4344 2742416.7251 142819.7856 132989.9992 279168.8562 235180.0171 235180.0171 107713.9857 121839.3966 79657.1133 149349.9596 130438.3884 147523.428 58077.5037 55310.7561 99699.958 55629.6847 208465.4124 68325.2409 151156.1357 64797.8736 92017.3464 67291.7777 53922.7983 122919.8649 422314203 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4199.5684 4136.5503 4300.3557 3153.5214 4687.8894 4425.7237 2247.4271 138042.335 6220.9918 5934.131 4547.7244 4547.7244 2866.8996 6690.9728 7147.9758 6166.9934 6942.6299 4428.3379 2844.8133 2400.9691 8199.9609 6981.9234 10819.9848 4831.1468 7163.4423 3455.0961 3490.7091 4022.8425 2871.1793 5573.2933 339328559 tktA Carbon Cycling Carbon fixation Calvin cycle Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6458.5815 6639.9108 3048.449 3174.9009 6815.3895 4352.0771 3280.4082 215017.5605 11920.4921 6467.3236 6467.3236 7013.801 5563.3561 3778.6465 8570.9886 9454.8797 4685.998 3220.7053 5342.8475 3625.9867 9925.4368 7115.8317 5141.9519 2841.459 5021.0033 4015.4983 3962.5139 6198.9304 110678828 soxY Sulfur Sulfur Oxidation NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 18490.2083 11155.7894 4669.0232 19554.0716 21404.9693 11625.931 13968.4704 17387.6678 10761.5634 16588.6004 31117.4048 160795.1874 9517.2014 21757.7009 21476.7504 32601.0817 32601.0817 6500.0012 32346.2428 14229.3756 30397.876 18263.7953 10300.025 11764.0798 11743.3633 13642.9869 24367.2832 26908.0128 44134.4091 25638.524 8892.8744 29166.0497 15256.7507 16658.6727 45270.2294 41326580 pcag Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 25462.613 17258.6037 22223.3053 24843.5734 16399.985 12947.0066 8880.3816 6589.766 12752.1242 8361.2856 486179.1636 20885.6019 22866.2739 13932.5547 10208.538 10208.538 13687.9769 26438.687 21794.5919 18988.4557 35355.8406 29067.0698 9552.801 13166.6768 29419.3251 9743.9954 41878.0735 25125.6605 28667.4021 15735.1951 11991.8495 14779.4859 10469.8177 29430.862 3372159 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 15578.5179 17251.9821 9489.8434 6171.5831 7874.6975 8310.3931 9832.7338 12547.7499 72632.9852 299141.5575 11107.1966 113163.4711 10292.7233 10198.3902 10198.3902 6667.1756 21515.5936 12856.4774 16186.3871 15106.4142 19455.6173 7902.0505 7724.213 13120.6632 5718.2207 28485.5678 21129.4068 18677.6744 7618.8323 32347.8039 13559.5788 7934.2723 17622.8792 86139088 hbh Organic Remediation Aromatics BTEX and related aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4786.6662 5132.351 5604.765 8210.9792 3133.8402 16708.9508 4880.394 63827.3777 4201.4706 3629.1652 50890.5349 4539.0617 4539.0617 6685.1084 11728.0018 6814.6 5412.6133 104599.9789 4228.4674 3184.5924 4146.6886 6506.1681 5772.2019 40102.3328 7561.8426 7027.2678 2962.8508 2869.2946 5015.0616 4546.9679 162451553 norb Nitrogen Denitrification NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 21847.9194 7886.1122 3226.5018 7021.1736 4900.4275 2945.8386 571200.5387 6450.813 22298.8944 22298.8944 9439.7671 8136.9893 3898.1199 8019.2498 5461.962 7487.159 12607.8081 3286.3229 5700.4876 9073.9491 2409.5497 2970.8175 8099.0079 2011.3674 7070.8119 242216151 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 62230.5935 41101.5602 18691.2389 153488.7993 6254.9783 18945.9552 31319.7424 39299.1177 25307.806 91459.6607 78421.3414 387579.2985 56339.1086 97431.4526 61305.7664 43656.045 43656.045 23940.3705 121884.6104 33285.8278 56617.9824 46667.2736 39710.4038 40905.9569 33852.916 42754.5977 42875.823 161904.5152 40775.0766 67773.5831 42461.5809 90557.0253 80626.9398 38954.6917 23688.1175 357600012 chnb Organic Remediation Other Hydrocarbons NA Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 5510.9248 13243.6419 6648.2591 3965.6116 3782.9042 14899.2717 8526.8418 7649.1528 74341.4516 9566.8954 5159.6406 5205.3207 3560.8345 3560.8345 3593.6483 15504.0972 6483.2051 8657.0027 4994.7406 8950.1077 3660.9437 4772.8964 8372.7335 3767.2468 13086.9789 7976.8044 8119.7466 3156.1985 4235.5086 5848.0379 3166.4311 32558.8179 340029304 mauab Organic Remediation Herbicides related compound NA Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 36612.9619 8502.4864 2385.8388 5313.6909 5060.4013 3790.7543 184400.697 4181.7853 12672.142 39693.8231 10298.3655 10298.3655 3986.4414 7655.4264 5846.2068 4631.1452 3591.5247 2939.4539 5598.093 2633.8009 15735.6242 8610.3984 10014.9495 5887.9867 2784.5862 3892.4401 7002.6376 123228556 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 17444.4612 17738.5053 4039.7167 21237.5377 3075.132 6771.0706 11170.3045 16391.5133 95511.4455 7532.9021 6955.7207 10939.4867 49557.9624 49557.9624 4160.6777 14631.8735 8095.0217 7016.3452 8370.8986 7892.73 19626.9652 11609.7323 11991.6543 5364.311 105264.2444 51082.6075 16510.0077 4095.1089 6778.4366 6941.1013 9279.5608 12686.4223 298599970 cysJ Sulfur Reduction NA Acidobacterium sp. MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 44667.6416 12175.2131 13278.9685 13056.8888 8743.5693 20952.7806 12331.5755 8390.1791 11870.5758 17636.0755 12244.1951 411542.3963 50015.4251 15775.1135 21825.1386 30680.9338 30680.9338 10471.3647 24741.4912 18470.6327 19700.7396 73604.4029 19254.2671 16390.8844 9204.6859 18563.6083 13829.4737 344329.1808 134268.8514 23313.8743 9144.4432 18664.2979 40873.1823 13146.5999 25673.4779 332377148 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5196.7326 13106.6097 2543.3308 3411.7323 2913.4416 91866.7628 15317.695 8489.45 7962.0081 4348.2846 4348.2846 2793.3239 15736.504 4893.4202 6402.7872 3076.6862 8642.3199 2759.5303 10522.5489 6647.4176 2335.5125 3501.1232 4374.8194 126578614 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 19516.9012 4960.7689 10958.8483 8946.6674 7816.4092 12373.6486 6237.4715 6496.3571 21812.6447 5701.2911 164096.7854 7846.3818 8683.6092 6816.7024 5829.4778 5829.4778 4525.3168 20054.1674 8250.5912 17624.8955 8486.2223 15489.0208 4709.7001 7286.7024 11228.1699 7700.4053 24317.7074 32396.1088 10107.6665 6838.3911 9410.4813 11903.5575 41203.6175 9536.6849 393178427 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 10916.3178 10408.5174 3421.4478 3056.0506 3507.889 5126.4676 3751.8488 8572.2577 184980.2282 9504.0583 10167.5277 5491.3414 4500.0829 4500.0829 6014.6053 23322.6814 5651.655 6615.352 9760.4971 5083.6562 6243.296 5343.7539 5956.9934 5046.274 11613.5489 4015.3381 7737.0849 6072.2521 7869.0331 8560.9923 3021.796 7105.487 110734506 rubisco Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 19989.36 11632.4351 13347.0865 11355.737 8449.0666 9615.0437 29924.5725 7247.5831 15518.3726 13796.3389 6671.1981 267136.1698 15461.7579 18436.1783 10755.3725 10759.2222 10759.2222 10444.6074 25550.2973 18645.0646 17610.7533 20098.1245 17168.1643 10782.8489 22290.6021 32453.766 29041.792 28756.5818 11405.0881 21813.6771 9330.7426 12738.5783 27530.781 24299.1109 21865.1726 227484093 dsra Sulfur sulfite reduction NA uncultured prokaryote 4759.6356 7223.2791 3706.4642 56493.298 3808.8936 3579.7602 6902.6483 5847.9446 6539.9074 5229.5682 3592.8176 5769.5336 2347.021 8904.9999 6660.8423 2267.289 4974.4151 4163.6287 2575.8982 6318.6386 374291743 TIM Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 37529.4767 21225.7937 492130.5337 19913.8921 15369.473 10897.1192 12901.1984 5702.5641 22174.7107 26468.5565 11427.7613 188075.5877 18241.5211 16544.7433 10257.9995 9941.6674 9941.6674 11886.3128 20464.2326 7628.631 10756.2146 10063.3683 8233.4432 7724.859 9360.1136 23034.7742 8241.5718 84749.5424 14116.7173 16397.7097 6189.2731 8489.0801 9428.6792 7419.5387 9284.7707 4757094 mer Metal Homeostasis Mercury Detoxification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 6346.7522 6751.5795 14372.0134 4840.8553 4959.6896 5718.5506 8914.6294 6272.8105 8705.9262 9431.471 92991.9159 10899.6397 11581.0357 8477.2956 10415.6243 10415.6243 4899.2694 14506.3485 21741.2185 6326.2507 6883.8222 10513.2581 4583.9146 7423.7846 14450.4434 7058.3198 20532.0288 9225.6095 12620.3785 4326.7085 6143.652 7538.8508 3924.5235 7777.7859 359835240 nfsa_2 Organic Remediation Aromatics Nitoaromatics Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 11734.2352 18076.6289 35348.2283 29261.6699 13783.4756 2603.4747 14843.7592 6488.9028 7278.7893 23064.3409 295454.3741 9921.4323 8606.0372 8507.8668 6777.5189 6777.5189 23975.6948 15258.9129 8441.9569 10710.6161 5429.0251 6229.0192 2558.9766 10792.2217 27052.1595 8865.1821 16250.1915 16635.4459 21368.5733 6322.8548 14339.5899 12373.8609 3970.2377 359739662 linb Organic Remediation Pesticides related compound NA Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 79240.0054 31976.4745 48220.1737 64611.9241 27140.7711 22246.2009 216122.4654 517926.0022 32717.9255 57609.4093 32738.092 5475951.2564 66010.0608 66910.1279 60322.313 44425.7428 44425.7428 41309.296 53612.8641 67221.2571 22135.3505 32997.5085 89039.3958 22721.6402 42368.0259 44871.7157 54514.9331 98822.4631 80350.2853 72091.3906 32153.7683 30493.7958 85271.009 80948.3323 51470.8975 83026038 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 13071.8072 19917.505 29356.5332 21794.4568 9544.9161 18442.0497 15810.683 9217.6162 16687.5189 19841.9175 13344.5698 462011.8307 15246.2589 17797.7779 7483.2972 10839.9559 10839.9559 11130.8804 22554.0863 19048.8415 17319.631 23058.6555 23138.9309 8557.815 7691.9761 19635.5257 11820.5546 36056.0992 16788.3352 24153.2297 12967.4915 11573.5955 11378.6521 11306.1894 24402.2371 223039931 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 92491.2565 90820.6049 9871.9073 13231.5889 4865.4574 12377.3886 28662.5961 9152.9597 10793.8869 16180.5089 28902.5858 213676.3426 29887.0903 28659.085 10988.3332 10692.2534 10692.2534 7587.4491 19367.1357 12854.442 12104.3734 32421.1942 33621.063 13447.3571 18691.5668 11960.4338 11395.4958 27476.619 12573.3581 18136.8501 9406.2435 12504.8474 29099.1361 83241.8369 18506.4523 99030619 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 5821.3614 9467.8851 4205.244 4310.9131 19538.1431 10568.0005 75508.5984 6692.8228 4337.9007 10176.0283 8038.1657 8038.1657 14865.8074 6811.1166 40782.1453 9776.3085 4879.3844 2336.0505 6559.2554 7055.0594 14651.102 9403.6526 4149.311 10627.0698 7101.3756 4387.7455 3175.4979 8245.7199 196177601 TIM Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 25063.3965 40589.6041 7637.4415 52895.2887 13664.6616 2889.8474 8126.6372 3004.265 13632.4003 13552.1776 8025.3249 165140.7824 13299.8162 15942.6734 72569.3776 16055.5758 16055.5758 18270.0968 12205.0763 8410.4491 7952.9372 53340.2775 24832.907 25406.73 8408.018 14992.7048 22080.3807 48517.1188 13319.2319 13621.5952 6415.553 25432.4872 10478.9383 24611.8344 12154.0152 345004945 dehh109 Organic Remediation Chlorinated solvents NA halophilic archaeon DL31 superkingdom:Archaea; 39504.8646 33135.9174 8512.2728 19516.1898 6099.899 15821.2983 8477.0001 16193.2131 17380.5584 11148.9606 1373741.3904 15776.8744 18218.9172 38399.3099 13506.0854 13506.0854 23255.7655 26682.6374 12034.3265 28127.8213 18083.4705 35909.4944 32869.5368 12527.7208 15439.0437 14542.9454 32163.2349 18273.2978 16732.9741 6262.7475 15088.0529 15668.1261 13255.8406 21415.8092 380511336 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 993979.1665 10429.529 8911.097 24402.2719 6698.5939 15391.7259 6090.2561 12472.3884 8176.671 306876.9808 106111.0669 9120.0293 12200.7114 23506.3247 23506.3247 13898.8031 15927.9528 10077.5759 10137.966 15089.9334 9224.0486 5248.0636 11674.7822 15017.8626 8890.4614 40518.5992 14102.7777 16182.9877 9189.8602 8481.0307 19057.9351 6133.035 23235.1001 223585975 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16660.4638 13932.8762 8120.0821 8906.1027 9659.6601 36273.0048 297498.3239 6704.1936 57712.3505 5369.8113 10001.7194 10001.7194 4669.3335 13747.0798 55672.735 13447.5708 15420.7896 4909.3744 9588.9947 9905.9138 14481.6781 46791.6215 19605.7699 16827.3649 17216.3529 9854.8429 10933.6185 13616.4025 5000.458 8574.9798 241665117 xylj Organic Remediation Aromatics BTEX and related aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 92279.9126 54110.1636 846506.1095 117073.386 35851.4946 44691.3204 68993.9361 67061.879 47262.8751 119828.0183 119127.9015 2785778.6856 112975.795 151003.1546 136248.1802 98346.376 98346.376 55637.3496 81119.3009 174956.2883 125265.4142 250729.0378 289479.9861 108896.6044 184276.9699 95921.7335 54587.0815 156716.3782 126385.2364 102566.953 34586.8792 44682.0593 65985.5588 46790.649 162981.8866 379988593 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4058.7155 3756.1308 3182.4044 3639.6433 3844.3121 5928.165 3662.2084 4015.1932 4083.492 4599.5489 2356.7723 5945.6962 8805.655 4153.7176 6040.7368 1825.4728 3383.4652 4552.285 2087.1101 5472.9409 373525868 MMCE_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 10628.4847 10429.8808 7382.1454 13927.141 8549.5235 5404.4331 7007.037 12786.6001 7584.0283 9391.1238 3758.4287 205273.0168 10623.9836 17894.174 17812.7428 10069.6617 10069.6617 7819.4885 18039.3424 11677.8838 11131.859 13474.454 11242.4152 7141.1047 4372.5014 11798.4431 4816.1903 20680.7035 8238.1039 12918.7564 3880.4602 8931.052 6502.7046 5001.4764 12002.5586 365903271 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus malefermentans KCTC 3548 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus malefermentans; 14459.6126 24382.5361 8056.0586 8056.0586 7421.2246 3321.6209 298384404 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8763.5749 101717.2286 10171.1459 7192.9207 6257.9015 4571.1939 13047.2003 9469.4736 78509.3076 140109.2671 20201.2575 13104.842 28644.1177 13647.8421 13647.8421 11175.6687 12679.5406 8670.6083 9754.9448 10846.7814 11618.5135 3028.5252 5174.4164 11586.7539 4319.0055 20174.6682 14213.6652 3652.579 5409.2621 8728.9729 5971.5 9888.3541 288921702 cutinase Carbon Cycling Carbon degradation Cutin Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 13097.2619 6081.6749 22649.4621 43472.9749 9195.7911 7870.7218 18389.3372 6661.9731 5528.5183 4925.0587 239927.3771 6961.2442 11910.893 16560.7082 11502.1797 11502.1797 3800.6426 16653.2439 9241.6399 10736.6684 18581.2465 26787.5702 3100.7608 6470.3859 13663.4986 5998.8904 21582.4201 18328.9807 15791.901 7232.4088 11376.9009 7854.9014 5198.6154 402258760 pcag Organic Remediation Aromatics Other aromatics Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 23189.4824 80623.8901 23171.1331 37559.4669 32442.9077 16197.4458 18787.1762 9564.5394 88743.5234 214978.1586 52167.4422 530318.3515 36670.2569 42345.9446 218098.5358 32889.0321 32889.0321 23616.1151 41249.3206 19632.8763 19624.8174 23989.101 42974.1043 12026.0981 32390.413 58858.4028 18256.5662 52913.3287 33342.0066 69970.5598 18817.1666 42447.9521 18684.1754 38674.334 27018.8057 323366394 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 76000.9138 34408.5832 35734.4537 51017.9827 38899.4607 2043367.1359 54117.4117 29977.0008 170672.1003 34512.3306 52699.7796 52180.6653 851708.8608 52798.6627 42256.6364 51323.8856 28235.1479 28235.1479 48848.4355 60731.9086 31747.4086 89727.9087 178884.9865 63888.1579 38071.1622 22481.9963 49537.1245 42940.4027 92605.3238 24677.3728 230532.7479 24508.8946 41812.5559 123785.8555 20467.9565 52946.5713 228470190 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8411.8788 6817.9854 6402.3306 3352.1851 3691.1752 7920.4456 77900.2827 27270.8583 4736.345 23114.5727 13747.1647 13747.1647 4608.7677 9740.2142 13316.3966 14820.4407 30939.3718 5717.8622 11621.7393 7246.8537 20138.3616 38747.5612 4824.0711 7218.5383 14734.1449 4283.8994 6682326 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6533.5487 4466.9894 2086.3249 3630.3686 4849.5408 4194.0585 2346.9539 2346.9539 7248.922 5237.1438 3783.8251 2912.2772 4892.0555 2948.1726 3317.5299 5503.6398 112462225 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8900.1735 27589.2813 4477.9383 4511.9134 5387.5604 101321.5375 3127.1273 4377.1221 5044.1078 3841.2634 5281.0278 3259.1605 5538.0608 313128343 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 54210.8001 3111.7913 2357.3918 1980.5681 12474.6746 4300.6513 4628.2925 83236.4602 40340.9089 3038.2422 6146.2166 3172.5302 3172.5302 4253.2905 15216.0851 5729.9887 13686.1331 12004.8611 9630.0562 4062.9219 3563.0425 6034.464 3252.4794 14386.2659 16551.2098 11764.4837 2198.3227 5892.0087 5258.1182 3553.5625 6116.2812 302881943 nitrate_reductase Nitrogen N Assimilation NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 15438.6701 5619.0363 9074.5063 9794.7194 12540.0439 11213.2847 7806.4043 9427.6648 8349.925 4896.8266 309154.2665 12993.172 14568.6762 6952.4685 4700.0048 4700.0048 8239.4905 15672.4511 10641.9173 13139.0968 13577.2969 42741.2915 6716.8327 12547.343 15197.3084 19756.8396 92369.1777 13668.9354 19904.5554 10437.3627 35936.0464 12045.8033 8115.3943 16026.9561 239880805 gdh Nitrogen Ammonification NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 61311.0211 226512.3785 9377.9441 21526.6254 173492.0574 13278.2266 26975.8115 12013.0844 31071.5878 11450.254 401601.0827 63795.2966 15505.8443 13240.0703 20605.5573 20605.5573 8464.8125 38895.1371 9933.0267 18413.933 30144.2003 9448.7701 11246.2295 23269.9368 25203.8553 10950.2886 37844.094 22806.6679 25667.3331 7674.1518 21951.4883 24389.8943 13274.3978 40457.4741 259446185 ppx Phosphorus Polyphosphate degradation NA Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 3948.4496 3783.9931 2615.4259 4691.0882 2458.0013 4780.495 3285.0888 2796.9995 8478.6675 3842.0617 4736.713 4495.6161 23631.13 2875.8657 2176.7279 5836.5513 8193.2363 5838.9807 2327.6575 3018.8844 2569.3459 18920.0248 347759509 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 17657.345 20244.9918 6424.8296 72592.7876 4729.4943 11014.7493 17783.0838 9529.426 18403.5684 39974.5871 11444.22 334522.8361 13109.239 16546.0726 20687.7586 21499.6452 21499.6452 7741.2395 29851.4433 49565.3478 5968.2988 22303.8077 22696.5089 4678.6889 7990.2905 19848.8662 17166.7302 77773.9449 21723.9851 38594.8772 7731.3802 18061.6424 14575.5735 7339.1818 10724.5372 206684172 catb Organic Remediation Aromatics BTEX and related aromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 146630.406 496206.419 108174.6557 97633.3788 75756.5607 55337.3658 188498.7988 106280.1684 60542.4369 184767.869 143550.1635 125716.5349 2705451.9564 534045.7929 166803.6727 227022.0517 152582.9872 152582.9872 119504.3785 156486.8327 77954.5639 98491.2102 122252.008 174692.4786 96325.7238 85902.7138 92068.9065 100259.8972 1063382.5771 128424.2798 350634.1236 53445.7636 91522.6896 152553.5662 70661.0422 120934.8649 238927773 narg Nitrogen Denitrification NA Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 87515.0358 19445.6076 67842.2211 61625.6991 47519.5284 81547.023 384890.1203 74944.8355 323819.6997 67592.4123 198917.977 102249.6576 1186185.6667 114872.6338 420955.9292 277704.7711 252518.7603 252518.7603 46314.5433 123167.9653 55532.8227 202424.5362 92087.8063 124889.5734 58336.0955 86998.5027 75160.0494 222805.1291 340465.0936 647177.6468 103466.5101 100438.03 104315.9054 56855.1526 31330.1505 116528.3446 384574729 amyA Carbon Cycling Carbon degradation Starch Vibrio tubiashii NCIMB 1337 = ATCC 19106 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 35380.695 17323.9973 12836.7088 11393.7481 13158.7992 11655.1999 7836.2306 12276.3934 82574.3107 9053.4599 300971.7264 12819.0324 17441.9085 11560.9337 8606.8798 8606.8798 11384.8634 50035.7192 18534.4264 105468.5433 18376.9067 422196.5113 10190.8547 8759.1333 18880.8409 8386.9658 57048.649 13043.086 18807.4052 7186.8796 13531.1307 14939.2446 10734.5756 23180.6034 389577047 amyA Carbon Cycling Carbon degradation Starch Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 13751.2353 8729.9809 13600.344 13043.0736 7483.6961 11182.7369 11779.7796 12943.7264 10496.5997 14815.782 8123.8801 217935.5976 15159.8987 51924.7793 9386.6577 6204.1752 6204.1752 8933.6969 17338.0028 13003.1355 19193.9111 16327.0123 16360.8825 5448.8873 9882.559 15536.7439 6541.0563 19910.9146 6106.7308 18050.9172 12023.5749 19303.9211 10479.1896 11570.78 18704.1801 350568109 norb Nitrogen Denitrification NA Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 82742.1156 28705.8442 28054.2461 7027.3529 23754.7186 12319.0355 9726.5721 4266.8892 10341.8721 17230.0755 14215.5146 379149.9855 44142.9606 12885.5935 39871.4236 40847.4325 40847.4325 8878.0529 20404.5066 11190.3807 16019.1568 26654.207 21053.1206 10257.9272 10286.7807 19093.8724 14733.6488 36921.2052 23585.0299 18614.4989 21168.3225 12871.3043 30728.7722 9400.8989 38687.4451 254282520 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 8546.0641 13919.8919 12686.5879 6818.036 7375.6826 5492.3584 6952.8651 10180.5724 4386.7533 159990.5049 7330.4903 10574.1038 7475.764 3155.9773 3155.9773 6377.3423 18390.9363 8772.6848 25960.2492 16475.542 6901.3569 5911.7865 7644.1237 13411.9504 4437.8712 24260.2562 8869.1575 17473.0455 5348.6477 7998.0315 7752.0345 7716.757 13468.7986 222441150 dmdA Sulfur DMSP degradation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 11493.9951 10572.5035 14924.8745 34766.9745 17147.2043 2057.8816 8364.3125 2318.378 7261.572 7424.7085 10372.4466 306453.8833 16306.3495 12199.6598 25323.6503 11934.2093 11934.2093 4337.2792 23438.6878 10051.3011 4989.6178 9011.9849 8249.5079 5038.8822 10189.4199 20130.2163 6658.5947 30721.2921 4624.4553 19777.8711 10391.4347 8966.51 14188.2805 7812.4314 9634.5755 262377672 b_lactamase Virulence Antibiotic resistance Degradation Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 5002.1524 2459.8154 2769.9748 5272.8662 8335.5488 2493.1437 73788.1696 8143.0357 4448.0091 5081.6069 3026.2238 3026.2238 4112.957 8905.8831 4560.0235 769766.3698 6478.4423 8041.396 3587.9917 3457.5549 8505.6223 3852.9954 12146.6021 7109.923 6453.0446 2405.4134 5312.6056 5933.1149 4279.7269 9597.9131 394487883 terc Metal Homeostasis Tellurium Detoxification Turicella otitidis ATCC 51513 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;genus:Turicella;species:Turicella otitidis; 48796.4154 11584.4034 59882.4297 32209.3912 24248.4603 465070.5396 157674.6867 23191.3354 11043.5567 41259.5624 46884.7462 81600.3448 777616.0002 42048.1523 73647.8338 41469.42 38228.1737 38228.1737 29030.6325 56232.0685 29182.5574 30489.7804 143023.6148 60296.7702 29206.106 31369.8471 40770.6592 36563.0837 78877.5231 17925.7193 41608.4583 18092.7678 21288.5195 21907.1724 15156.91 78517.0019 110819439 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 121878.7812 289025.4937 406835.9677 88589.5757 82683.4866 40251.6726 55367.4718 24784.7837 78210.8394 181067.1789 182805.0966 3601076.6765 91619.3342 130931.4256 188153.5686 82632.7955 82632.7955 35291.6155 117489.1478 38222.8801 55742.0678 42917.5276 38627.7582 103072.3106 89276.9237 133020.522 80423.184 313664.8833 662368.9477 156236.8636 47966.8548 143447.6288 144868.9555 17451.9781 109065.3931 338166073 bphF1 Organic Remediation Aromatics Polycyclic aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 3889.8163 8193.3091 12210.5673 3524.9228 10247.4332 3846.9871 2574.5699 123113.2383 4918.4715 8850.5684 62695.4717 2990.7326 8606.2101 6992.9662 2464.9344 4752.1752 9491.5106 3329.7156 9730.8055 7117.3133 6474.8576 4193.0441 4716.1338 3135.6998 3796.3381 17292.3496 108757374 nrfa Nitrogen Dissimilatory N reduction NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 4431.0488 5196.1338 6894.7884 5576.6761 5222.4868 4237.8101 9451.5666 4660.9019 17199.7872 17199.7872 11942.28 6885.2169 6661.8794 2582.8945 3967.5839 2634.4692 13182.5498 9578.7164 71052.0316 2020.7432 4909.8583 284443995 nirs Nitrogen Denitrification NA uncultured organism 4485.9323 5484.2136 70933.4812 4922.0135 4099.6624 2956.6507 2956.6507 8448.4534 3701.2627 8898.0973 3871.3184 5140.6613 2214.6305 3235.2893 3486.5747 7794.7677 310761375 nitro Organic Remediation Others NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 8640.9689 4745.1119 18068.9648 11230.9749 4661.1283 18805.7386 2445.1657 4341.2442 10872.3723 12911.1781 121416.8159 8841.9067 7229.7743 18678.7946 9773.3792 9773.3792 10208.1918 23447.2551 16351.6228 4798.9617 6458.3232 6085.4558 58890.257 15564.7169 13021.749 22160.7801 19433.5549 14631.2684 5802.6421 10840.936 5171.1484 6877.2433 4947.0046 94984646 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 175123.0874 67561.6166 64882.0087 795495.9434 76977.3112 104007.6762 204051.5747 200029.5266 116414.1538 94815.7343 103709.0607 86746.8698 2165758.6464 124739.3897 105752.0724 492591.1968 133931.59 133931.59 75899.4131 129324.5227 69211.8877 142507.1307 143633.8578 119670.6591 60743.5766 89913.4952 192052.7941 66376.2769 244713.1086 80273.9501 172508.2381 69957.584 98008.8368 141003.0598 117324.0469 168013.0735 1255460 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 11617.2188 12210.915 6339.0578 2426.914 3813.714 1918.009 5764.0193 4891.4821 3999.5154 65899.4288 7931.3784 7879.1893 6062.0534 2424.8192 2424.8192 3855.9404 9123.3075 5087.5807 12554.5389 15135.575 8356.0397 5447.9582 4082.8677 7050.4118 2842.7544 13080.9238 4466.1795 10093.0459 2804.5355 3992.0293 5652.0144 2800.6694 19784.8941 229468987 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 16626.887 15059.2627 203279.2174 18170.3893 12519.9382 15736.5801 5743.6221 11872.6943 9454.1644 23330.8694 204491.6202 13086.9087 10000.756 20387.034 7709.1543 7709.1543 7671.1857 15938.0095 22113.4368 17665.7152 13040.0984 16358.9373 5684.7993 8004.0416 12722.0751 9439.5635 24355.9238 12257.3267 17117.6802 13258.0863 10103.8936 11681.0593 10789.9628 18779.3382 74038306 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6047.3513 7280.1486 6418.7407 3522.1468 2618.351 4573.7112 79408.1313 3742.8397 4587.5191 5971.548 6572.1346 4726.9993 5582.9116 2698.6997 6575.3182 7712.3591 5656.8699 2560.4669 2699.5032 2388.5495 5924.3056 255924371 amyA Carbon Cycling Carbon degradation Starch Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 8927.7644 5763.4016 18845.9079 17323.3369 6007.2542 24167.396 11549.1909 4058.7369 9290.3881 10091.6348 96316.0036 8898.1721 15171.6084 26999.1257 13011.5242 13011.5242 3649.17 13970.4899 4869.2286 15908.8691 13084.1443 4987.7814 9250.3864 11047.4928 4870.2271 27501.0124 28434.2038 16428.2842 5851.1321 10669.2552 8793.5342 4470.415 13254.7413 114317061 chnc Organic Remediation Other Hydrocarbons NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 6932.3691 5632.0704 3860.7139 3644.995 2610.4493 6026.2381 8481.2663 3708.027 171429.2239 7572.9204 6917.7489 6543.0921 5638.246 5638.246 4976.8641 13659.2314 12709.9704 5404.8087 15129.1336 11824.6196 7119.7061 5134.3861 12989.3047 3572.0502 19050.1962 12976.0041 13205.8973 4389.9478 6395.8477 7851.6801 4028.5284 15575.8376 119377291 ppx Phosphorus Polyphosphate degradation NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 28719.3869 19110.3376 11076.759 18873.2677 23001.7575 38516.3192 14935.1475 16379.4414 11319.7562 15110.0002 20579.9975 18035.8322 306903.0638 27127.4888 20539.2053 32630.5741 25535.1478 25535.1478 11102.3213 314011.0834 17374.4251 46384.9621 41438.7158 29537.0597 11508.4043 16479.727 37284.9204 21016.8289 34888.4918 19781.5637 28825.1119 11833.8976 18212.3017 15688.7386 14158.4736 31510.4654 24943171 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Gongronella butleri superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Gongronella; 139791.5996 17615.4372 46063.8089 54930.2996 21202.1239 51517.1662 279899.1957 29001.1999 47815.4593 36174.5412 85454.8542 673717.2786 168605.5023 55313.6227 52062.1269 49182.6688 49182.6688 79949.3794 205023.2935 146095.4482 38524.5197 125790.6859 96970.3396 37894.4829 145314.6235 103289.1165 148687.7683 125364.6871 142599.9341 95705.5638 65465.0485 37152.8944 66902.6249 68344.4158 52302.7829 345508635 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides sp. D1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 13068.9753 10595.0635 10319.5392 52570.403 5334.0669 16999.9416 78336.747 3837.274 19373.4239 8513.1478 6181.4724 6181.4724 8272.4988 44943.1124 23403.9556 15941.6599 5785.1966 3978.4034 4447.6735 13114.8674 7589.7829 7210.7685 3878.8654 6677.8646 7181.8382 4440.1391 7325.9599 70930925 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19961.7416 8966.478 8810.4771 3310.5602 14012.8921 21608.6575 26706.6157 9535.2855 24924.9295 206726.5348 7412.1191 34462.4945 38955.0821 10033.9716 10033.9716 10592.396 22999.4337 46616.5881 23164.5386 24744.2601 14362.7811 6682.2481 9732.9478 12666.0834 8985.0921 20473.5637 8580.466 13304.525 9128.7718 9184.79 45520.9026 37757.3631 20286.2903 254523597 ppk Phosphorus Polyphosphate synthesis NA Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 27042.0252 33364.2897 40003.9392 19668.4658 14065.964 13196.8854 11086.1007 36782.6871 39552.8023 20456.6502 572882.4091 17682.7937 27131.1358 28672.2972 16694.1691 16694.1691 15644.7962 35730.4199 24431.0355 164856.3415 30183.8157 15933.3234 14278.0505 22579.5183 30071.401 23659.9212 87104.4975 42602.8284 31692.2597 22914.5118 22928.1991 30151.4596 15014.0761 49931.988 118701991 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 122288.7376 7401.3487 18718.627 38100.0523 6029.6833 27656.2741 13226.79 10632.8543 19260.2726 13832.5464 95666.7655 204823.2417 10345.1677 17043.2381 38388.8509 14619.8785 14619.8785 7361.7168 48121.208 16487.0036 33177.7845 33824.4058 21176.9139 8995.6981 13224.7169 30332.7419 11559.955 69648.9596 28280.1472 27730.0677 10915.6406 22403.7407 18249.1881 11055.8768 11070.9171 193527477 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Alternaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Alternaria; 18271.7767 10715.4728 8382.9103 59995.6631 8041.3209 11438.9167 5852.8526 7339.6453 18520.4935 10224.8417 133322.4082 11569.7697 11560.5736 12095.7645 7129.8533 7129.8533 7202.3262 24752.9004 9847.4837 170326.7963 16719.7383 75641.1345 4604.6798 4949.6539 12673.2007 8085.637 23888.9872 13840.1674 18715.7474 7843.7267 8905.5928 26209.8768 5882.9228 22911.3197 358064944 b_lactamase Virulence Antibiotic resistance Degradation Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 5395.2538 8794.4496 14116.003 5581.4564 6105.0619 3452.808 4767.8146 4902.9506 108583.4304 7159.0876 5108.5135 5179.8499 3986.1374 3986.1374 4001.7894 9973.0195 7564.8449 8563.0544 7639.5191 12229.7133 4761.3132 4724.3742 13144.6958 3766.0914 12010.9476 9907.3697 9293.6993 3746.2542 5734.1007 4964.0871 4270.4981 6720.4726 229494341 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 30252.4413 8975.5176 189049.909 7549.2814 17903.3433 11842.0746 12567.8994 15166.9152 22857.1653 13600.6155 261484.6324 15152.0744 20774.9838 12277.4528 12424.6651 12424.6651 11150.1824 29023.8954 14141.9286 22554.4355 16364.0234 23470.8577 55021.1848 15568.4984 21727.0804 13956.3389 96987.5965 9536.2811 25857.4355 9894.2562 12442.3507 24854.2879 11263.2733 24813.54 183983455 linb Organic Remediation Pesticides related compound NA Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7827.7237 6666.038 13610.577 62107.9852 8670.4032 15450.5754 10716.5231 48839.1042 26313.9864 6911.8011 225683.8116 13467.5175 19930.103 16630.2873 14191.6625 14191.6625 6641.4453 38599.2266 14564.9533 13959.7368 26644.0482 9754.0159 10629.5677 9791.7743 77374.5067 23982.8793 47515.5931 10910.029 23992.4245 9434.3587 16628.2506 22095.5926 6391.3507 16060.1386 62421700 nifh Nitrogen Nitrogen fixation NA Anabaena sp. PCC 9109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 7453.9926 7079.2435 9152.1591 6567.5177 5842.059 3008.0491 7116.696 7617.367 2520.1515 215392.0397 6372.4175 6876.6256 5645.8965 4372.8675 4372.8675 4819.1707 13830.9038 8239.8845 7827.8237 11799.4849 8728.8848 4875.3224 4985.0119 10652.1336 4795.7885 19311.1962 9528.4965 11515.5649 4292.0324 6477.9991 6541.0027 4711.5289 14405.0751 73538014 phn Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 11992.6916 17687.8239 154343.0418 12743.014 24600.983 7049.0909 27806.1863 15000.3696 8978.2121 12188.7961 17387.2055 106842.3171 137967.8221 13050.6432 212047.5555 16668.8332 14063.7669 14063.7669 6481.8921 14325.6301 21017.4983 13800.993 10109.8111 11754.0517 20228.3438 14619.7855 13106.961 38250.3635 62173.2698 10522.9824 29821.9262 13090.4238 24370.8626 8858.4155 12180.6079 11664.2496 157382822 napa Nitrogen Dissimilatory N reduction NA enrichment culture clone MAR8 superkingdom:Bacteria; 7075.2564 15551.0703 11521.518 5714.1066 8695.9281 3837.6688 3258.6863 3258.6863 2958.476 28821.6818 10289.1046 9042.9289 7191.0944 5551.3441 6177.9888 17571.4806 4368.6132 30198.6612 8123.0774 3232.9219 11728.3239 2729.8426 10717.4567 325192594 hsp90_Stramenopiles Other Phylogenetic NA Albugo laibachii Nc14 superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 12923.5777 53956.2812 27115.4837 13346.7527 23465.2912 9269.5131 11298.5064 20905.6598 16199.925 383660.5167 20944.511 30975.9351 26324.6154 18371.2087 18371.2087 8076.7368 48169.9413 20395.1191 32042.9308 20267.8609 12309.0596 13245.6937 12927.4389 38745.4868 32206.5389 49941.9232 41442.9255 26756.8935 17932.1709 17674.7142 24209.9595 13243.0718 25657.6866 151302143 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio profundus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5862.5693 11908.2551 4935.7513 4080.8188 3046.9193 4350.5031 3540.9137 9052.1566 3854.3822 5016.699 29667.8394 6807.6042 2730.469 5594.7369 5654.9607 3352.9037 60114.9068 4044.605 4572.0756 4770.5589 4166.3485 17949.8173 295411202 ppx Phosphorus Polyphosphate degradation NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 5783.9445 5551.0244 9355.9808 3757.3398 2276.0798 6262.0794 15045.805 3321.129 77683.5371 10193.903 6222.3697 2509.0472 2509.0472 3167.0902 9752.3357 8641.5939 5753.679 4996.3169 5238.8932 4655.8984 4338.3256 9252.3866 3999.8888 20314.467 8133.6241 9071.4638 3586.3501 4467.2958 5028.8367 5934.8134 6488.6174 359423229 gdh Nitrogen Ammonification NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 10900.5629 6613.2267 14644.4589 17069.0309 13530.1812 4258.9806 5619.0891 3773.9507 5767.7206 120515.4414 7858.5499 9713.6063 16046.945 14792.0864 14792.0864 6605.2583 13275.2083 3657.103 5124.0093 22088.7112 3193.9507 13353.3625 10093.4321 6761.2436 12510.611 13380.9118 9846.4812 2996.621 12004.6951 8498.7805 2995.5119 4581.5671 333909353 poba Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 16932.4751 8546.2765 26049.0005 28335.2566 5859.5892 10047.2628 13120.5085 16461.8897 11324.3265 20333.6944 7962.9152 301918.5923 18105.0645 42295.2794 12055.4629 18571.8063 18571.8063 25004.7185 28073.156 19809.9403 19084.1296 15101.158 18842.1881 14225.7726 23722.4197 21983.5722 13607.5972 39208.8296 27499.8317 22899.1029 17908.6749 18697.2803 19888.3747 9634.2046 21808.9874 89350572 bphF1 Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 67113.4779 7676.542 76642.1383 40094.1515 6692.1526 12248.9417 41646.5399 7948.7652 25080.5744 28374.7722 42274.1795 528125.2253 60638.531 37472.6381 24448.9254 78942.8402 78942.8402 46261.246 113173.9024 27429.7774 21762.3833 124255.3029 35519.8737 20416.3087 21744.7549 180473.3665 23444.2673 220826.7434 75449.5236 38018.7466 26212.4867 29324.347 43955.1396 183722.7765 26504.5279 214030377 SoxV Sulfur Sulfur Oxidation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5886.8288 1997.8716 3388.5099 3467.7334 5629.4244 5107.5057 3629.7038 195274.0011 5493.4583 8217.7669 9215.3215 4356.5463 4356.5463 15949.6609 6273.4071 13660.2505 12426.9444 6311.5164 3846.8087 4968.2247 8658.5588 6810.6883 15455.0879 8458.9425 9321.2461 3579.7284 5828.9929 6352.3396 10970.4115 4403.8891 142851886 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 14640.7147 50664.9243 7416.0611 41527.1285 19448.7638 12174.987 10406.9148 3463.4582 11434.4499 13621.0114 9555.029 251111.4578 12553.1677 15276.92 31846.5894 18641.5923 18641.5923 13129.7372 23348.4887 18927.7735 35026.0322 23764.8503 15505.4022 11054.3407 7012.7956 33935.5601 20497.2039 110636.4285 25380.7341 25838.6493 7903.113 11958.4751 11152.383 11086.144 13489.4308 187727841 mer Metal Homeostasis Mercury Detoxification Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 8871.2524 21510.2363 15075.592 17154.1564 6120.9098 27973.9198 17677.6385 4295.2128 6270.9192 9283.1831 14992.5839 75364.3241 8441.3618 31400.9892 12004.5089 6246.2621 6246.2621 8993.3054 14579.2419 7655.6449 12847.1645 9105.4425 5259.8788 13795.2748 52919.4701 15252.0795 29366.7145 16792.5772 25437.5322 44438.0787 11785.371 11085.1774 9365.9254 7617.5928 8823.1092 26278786 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11572.7493 3733.6798 3805.7862 5579.5747 2536.0579 164277.7561 6881.676 4576.6846 6370.1639 6848.788 3374.073 23653.508 4750.2374 10583.5799 4088.4056 8380.1173 6623.7634 4813.4443 3460.539 7178.0194 55376903 nitrilase Organic Remediation Aromatics Other aromatics Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 5291.8049 7313.3945 6925.5065 3820.499 4031.4402 43535.579 4284.2964 8602.114 3132.3351 80476.0129 5195.4452 11749.9305 1947.2645 1947.2645 3217.8721 7567.1558 4737.6798 6706.1804 2738.8017 8805.8597 2312.6722 11393.5384 5516.642 8677.4713 2259.6668 9020.6072 7458.4875 4493.3434 6765.5266 304407890 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 5226.3849 2792.8928 40139.705 8717.8666 91962.3859 3789.3101 4083.9219 2374.3826 2374.3826 66828.8229 13787.438 4762.5501 7023.0709 4978.7402 3259.4508 4607.0707 7716.8724 2340.5281 14625.8034 6167.0797 2099.4902 3290.2733 2117.686 7874.5225 109804235 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 192528.4277 1951785.0965 46484.9957 599829.398 55995.0853 1850016.3036 184905.8069 222742.9903 24911.5462 50909.093 46796.1582 474794.7296 2356422.8092 58339.1318 43988.5542 51991.4485 243080.4292 243080.4292 166069.9262 183395.195 44723.2121 77032.8585 78708.311 70097.2121 30329.3408 28871.2777 118011.4723 56178.0224 366942.1286 77103.9292 84409.0788 47603.7145 89649.0696 67634.3003 31910.135 110049.7511 71849022 catechol_b Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6844.5067 4145.3386 43945.0588 639714.7462 6537.2918 50877.7533 110354.5549 9525.712 5523.1524 4206.1145 4206.1145 5638.5811 10198.4885 10055.9381 12874.5714 9117.4505 9101.141 2685.9868 4411.2651 19940.7088 3877.1715 16162.3861 10493.8547 14888.5354 4008.2063 5324.7098 8490.8098 3303.5289 8892.3551 227483373 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 27297.1822 55494.1372 20979.129 19936.6239 5913.9602 19413.6206 40135.9488 12273.2044 18133.1492 86185.4045 78328.2233 1650254.3873 28087.4354 20837.8535 49697.0691 27512.6339 27512.6339 29621.3102 54223.5993 40271.2934 17592.6646 82479.9434 21651.427 35618.973 20556.8135 33426.6215 25139.4335 132215.2594 50961.0681 37860.432 14386.7911 40212.5045 47596.6549 23339.9193 148879.0216 372281626 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 7747.9912 11131.9354 6999.5715 5403.8554 2815.6425 4933.6998 4369.1088 5235.253 4992.3002 4992.3002 4105.0241 7594.5959 8657.866 15308.7392 4459.9072 6643.0752 6094.5934 10717.9063 15095.1969 4883.9545 7121.686 4754.3293 8040.961 32075.5933 2477.1545 7102.156 50120161 arylest Organic Remediation Aromatics Other aromatics Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 5416.4073 5953.039 7323.2217 6056.1659 13737.6284 4606.7346 7066.2987 4709.8133 170909.3214 4770.3292 5754.132 9978.334 4031.9793 4031.9793 3000.5947 13469.8448 4983.1404 5405.8724 10888.8028 6173.2028 2853.5414 2977.0846 8495.152 2993.2602 17171.6301 8475.9417 10963.6234 4796.4322 4123.4621 6455.9591 3197.7308 10086.1941 375133867 tktA Carbon Cycling Carbon fixation Calvin cycle Acinetobacter calcoaceticus PHEA-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 6994.1914 6885.1985 7234.7494 4630.9611 3294.714 6627.882 6851.6391 5255.756 188097.0248 13192.6387 8536.4271 4282.6494 3424.3698 3424.3698 5729.9708 12777.7977 8184.0264 14751.6006 10893.6847 10071.385 3129.3844 5758.685 11431.1685 3835.8467 16978.0153 9573.4675 12458.2349 3314.4444 6275.3541 8461.1679 4277.2534 14223.8751 95110170 amyA Carbon Cycling Carbon degradation Starch Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 8061.669 5671.6524 13075.3666 9643.1061 9960.8937 7308.2481 18958.2809 49357.8243 67474.081 9526.8991 5411.5098 8345.117 5253.4999 5253.4999 3896.3865 14810.0242 5900.4852 16525.3937 15674.3565 6513.3262 10435.6231 5998.5148 12631.912 24421.159 17880.3118 13486.7867 20769.1201 10792.3755 5825.2453 11027.0623 2978.9588 54700.5411 353207527 terc Metal Homeostasis Tellurium Detoxification Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11937.9593 5295.0399 8810.6123 11982.2774 9532.1279 5008.8031 5359.8347 6561.4317 12712.9508 5481.4763 717329.4482 9654.1585 10146.0623 7743.019 3495.024 3495.024 6629.7989 16632.3201 11448.8727 10800.1221 12446.4406 9781.4195 12648.4909 4754.5418 12864.7622 5030.3907 23194.8833 15215.5882 15291.2215 5655.457 6249.0845 14870.2737 6708.0299 22874.3112 27355530 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 238190.7968 15980.4983 236070.7667 86538.7058 69619.7961 33665.4336 76481.171 109036.6874 114427.1604 101593.5905 120199.0896 141295.5799 2181832.8846 326621.4901 184120.6471 292929.3722 89648.2124 89648.2124 158201.7386 208817.8802 79794.212 188408.5256 187950.4627 136279.3521 122185.8129 97551.0741 145646.4606 142932.5017 214596.7557 200116.726 129570.0285 84433.248 161629.5318 102784.581 149842.7148 161430.662 99083295 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8404.1191 8157.1045 27423.8359 21532.4428 6283.8938 7364.5336 3986.7372 16657.2951 14188.8262 47386.8614 70064.158 33970.9031 13186.0489 11655.126 12980.8649 12980.8649 6553.7299 24034.1349 45889.943 14636.094 35529.616 6895.3686 8982.7466 16098.45 21486.4696 35313.726 34810.6209 13242.6538 18721.0267 8411.966 13646.3197 22610.312 20754.0091 229957.185 45679 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16280.1992 23157.949 7361.7027 24598.9653 4967.0258 8831.2128 8766.566 14222.58 48813.0983 21128.8214 227490.0897 113461.6832 24605.7098 41365.419 12076.0898 12076.0898 9002.9255 21068.1522 15078.7306 7694.6737 12717.7877 12152.2728 7614.9843 11783.5539 19603.5068 10196.1165 29247.0817 11675.0934 15354.3286 7515.7475 9910.2326 16562.2916 6979.6217 487610.8175 391323545 amyA Carbon Cycling Carbon degradation Starch Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 50420.7201 24442.9373 19798.1965 12373.9367 5764.2762 13036.3997 8403.4227 11663.6366 16839.0024 23993.2518 17199.6605 326712.1184 17010.4726 15008.7263 27617.9542 11044.9831 11044.9831 13526.2989 23419.671 20789.0746 14008.257 58089.0029 18237.7448 10263.3486 10931.8438 25474.0175 12708.3613 52671.4672 17944.8297 26657.0321 11842.1823 13738.357 16120.5651 10516.7425 27894.0226 315481242 ppx Phosphorus Polyphosphate degradation NA Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 13667.1074 37282.0749 9004.5615 2254.8598 5225.4084 3597.217 4720.1866 6244.1007 32945.2976 5016.243 5016.243 13902.9025 4142.4836 2484.7859 4434.096 7778.0102 3114.172 6818.7196 7567.1311 8485.0675 365846345 amyA Carbon Cycling Carbon degradation Starch Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 13667.2024 38832.4997 16726.6497 12341.6823 16367.7885 8762.0705 8737.1449 32004.1361 10847.9677 520781.7174 13414.4045 18698.5108 10249.0156 19618.6912 19618.6912 12156.7786 22927.0887 11267.7746 17189.7469 20379.8861 17178.5464 30507.0824 10978.7135 11766.0728 15979.6102 43182.3606 20416.3167 18166.4 5320.6215 30735.8104 14841.2431 6697.6707 36194.1345 167355472 cysI Sulfur Other NA Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 22072.8551 9346.0755 8807.2844 136258.1753 9414.4925 48306.5097 11933.3801 130533.2635 8671.9045 11788.7409 18325.6267 14705.9451 14705.9451 10618.0799 40291.4062 9393.9081 29970.0321 52383.044 9352.6034 8343.9594 12017.9939 22902.2955 33717.8563 48686.703 32736.3017 70409.4356 12063.3158 15364.1452 12807.3807 8565.5224 24150.9667 332558902 terc Metal Homeostasis Tellurium Detoxification Rhodobacter sphaeroides WS8N superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 65105.9743 26388.5238 6462.3435 68059.2015 365972.3545 17480.971 5626.2056 8954.4516 611417.7434 12741.6167 25119.9378 317492.3602 28091.4938 364028.3129 7687.4397 46301.2577 46301.2577 17976.7944 26341.0606 10884.3126 21454.2263 80276.5402 12127.4265 7654.4216 15596.675 45229.6948 21427.1639 44286.5244 20388.1073 19140.7508 5059.6994 15126.3919 30080.4164 5229.0657 19515.8453 211905957 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5216.3316 2520.9173 2742.912 2742.912 8566.8828 3466.1454 6571.8781 2263.8858 2024.3979 4247.7032 4605.2045 193230816 xylanase Carbon Cycling Carbon degradation Hemicellulose Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 22357.323 6026.6569 19657.2818 6010.331 5063.6434 69695.146 3797.4639 6313.1855 10307.4568 95743.514 25653.1894 63987.8419 8780.2649 8780.2649 4070.407 19419.5474 17744.6987 28252.0016 19745.2485 7565.0534 11555.706 5384.452 7898.7571 8971.9907 22607.1984 17997.5451 9324.2008 9917.3688 8961.0179 6990.4065 4318.773 5843.4925 161390777 soxY Sulfur Sulfur Oxidation NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6156.7932 12007.4396 31160.9206 13656.84 6866.3246 4886.9757 5023.1377 2763.1516 180413.4241 6619.5661 7080.6029 12939.1928 6573.5128 6573.5128 9900.3812 9597.1846 11927.2495 8341.651 4238.1122 24829.8736 4991.5068 7522.6703 27144.5188 4742.4231 16566.9446 13222.7293 20637.1105 8996.5145 7454.6423 8677.0079 6239.0324 8641.7732 148292159 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16399.5849 8393.861 11084.2668 9646.1605 8795.5851 8890.7408 6043.0099 7935.2456 8719.8353 6325.0531 199759.5098 11654.211 10709.0946 6841.0054 4532.2016 4532.2016 36470.0745 18332.5803 14075.1921 14366.0293 16243.79 20856.7938 8092.1391 8613.9437 13673.5503 19406.1383 24583.0212 10858.7885 21538.8704 5808.0264 9381.3032 11155.877 6750.794 18486.9585 313131902 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium bifidum NCIMB 41171 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 44573.3572 14569.1985 5965.3592 15690.5282 21200.7252 5914.9087 9232.1059 46833.4049 5704.4253 37967.3212 18911.8147 241935.0498 14314.3106 16782.6776 25449.3227 14006.8764 14006.8764 7587.7249 238936.334 10133.6142 7309.0501 19111.9242 9486.5393 15534.4778 16798.5122 30296.4637 34527.801 223079.5913 47560.0805 25885.2361 11704.9973 14177.4448 22107.4765 11019.2796 11747.1294 110667811 dmdA Sulfur DMSP degradation NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 4054.5025 5530.3652 3979.6541 4508.763 5166.7254 3186.636 77138.0584 4606.8203 4339.2855 2231.8703 2231.8703 3499.2185 7746.8543 5509.0331 6256.0501 7501.13 2097.2352 4104.7307 6467.3915 3011.1541 11706.538 5528.0486 7084.2616 3397.2986 4282.8627 4524.9914 2965.7257 170140632 pcpe Organic Remediation Herbicides related compound NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 6793.9456 3056.9951 9234.9145 4720.1639 5992.4553 59696.8565 6495.6463 2803.2729 2803.2729 3384.3066 13536.5876 6045.3075 4497.2908 4114.9362 2971.6608 8685.4659 9541.1403 7572.7337 3386.5626 4561.4331 4058.4912 7289.4341 78093582 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6823.2644 8884.4657 11512.565 3208.6835 2954.9527 6536.6035 2783.183 2783.183 4666.6212 8185.0577 109031.3058 10304.0243 4230.3288 11801.8605 6633.7992 2739.7839 4703.9579 6482.4897 6116.5292 374602373 terc Metal Homeostasis Tellurium Detoxification Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 66913.6298 5554.8206 17193.3117 6958.3655 2205.6121 76322.2956 2199.5009 6411.9181 3905.0951 10117.4727 76498.4058 6887.0382 13457.8821 18999.738 6667.2819 6667.2819 7518.3863 24052.0064 9616.796 11948.9478 5282.6751 10710.0867 19353.9838 13980.2913 13756.5327 7066.639 23488.6218 24942.9026 17342.5538 16432.2773 7288.2407 8390.3008 8203.8784 13597.3588 296426642 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 186657.3571 19293.3589 78612.5757 123498.4993 114460.3871 55841.4014 52306.3583 92389.0576 73030.2588 62841.2397 99447.3808 76730.0448 1060703.1614 202428.465 138560.9714 96954.6914 169707.8416 169707.8416 57602.4419 133318.6371 62841.7799 123394.1288 140960.1649 161739.7736 69000.8388 71039.5213 125137.0055 67850.8094 200832.7265 91126.865 167401.342 46743.6491 90820.8777 73361.9889 56500.3593 89892.3059 312115120 mer Metal Homeostasis Mercury Detoxification Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 11656.7685 108867.843 31178.4671 1160342.1449 15365.1542 53371.655 37069.7828 20645.5466 10889.1958 33786.5338 13996.3954 234696.0875 85570.1479 16035.3749 30359.2887 27685.4799 27685.4799 5492.5363 13819.5407 14014.727 4795.8417 107278.3152 8411.3074 7207.9963 24586.9884 32513.482 22232.7993 48383.1739 127126.874 24046.3499 7390.2085 13660.519 22902.1216 3943.631 13339.4778 294884061 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto100_4w superkingdom:Bacteria; 16600.3607 27528.5651 14296.5123 39588.7079 3123.2936 11148.3704 1922.6124 5677.1631 21870.182 8632.8178 146463.1041 10021.3728 7260.4944 27515.1561 39541.2099 39541.2099 7025.8624 13747.5386 10722.6 6963.1156 6769.2128 29822.5372 4015.2117 4871.8147 12547.7486 13006.4439 15904.4932 5484.4104 11411.7053 4817.4895 10885.3695 7866.5174 4505.8806 11553.4568 14090308 dsra Sulfur sulfite reduction NA Desulfovibrio cuneatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 26590.5189 78168788 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 37415.6584 53199.6494 7962.5762 13508.1273 8360.6121 8665.4123 17107.4975 30186.795 15549.3946 272547.7832 14359.2707 15104.8587 13210.9541 17141.6236 17141.6236 8106.875 41015.1155 13516.1118 19599.1445 22290.9177 14867.0822 14669.5303 13493.8505 27651.0334 47725.8678 38100.2517 31110.0634 23164.6193 9729.3582 18255.7653 20305.7452 14948.5079 12998.0346 325681126 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 17333.5585 7290.8938 9453.2131 136823.3947 3097.1459 6723.7518 3804.8581 43866.1474 12234.6945 40998.9275 40998.9275 5553.2942 7311.1512 3632.7635 38618.9567 39313.2829 4223.9909 6266.8183 11510.1063 28506.4986 6820.9691 7047.4927 2167.2362 9099.4498 7129.6093 2855.4959 5809.8195 264680192 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 5774.9215 9754.1231 36718.8375 3256.0123 4232.2997 2322.4859 7762.8096 7248.7807 4428.1856 114808.4662 7016.1313 4757.1548 5344.6332 11457.6622 11457.6622 4093.2867 9004.748 7780.443 4173.5435 5718.4377 6027.6576 2664.2477 4109.372 11377.2104 2988.7963 12391.3516 5996.1132 10031.8914 4717.1546 3798.3732 5855.0388 2512.0992 11929.5954 14022193 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 13612.8243 33559.8799 51417.3222 34762.1843 11356.847 55044.5773 5973.1117 12235.6328 12747.9827 7134.375 420226.4562 17473.6672 18551.9405 31004.3508 21953.6837 21953.6837 10447.8026 21416.1961 16576.4398 7688.141 12299.4364 15309.3172 26335.412 28985.9632 35848.2528 8940.3401 60117.4449 23732.2789 34527.5594 11572.3923 14879.4663 12010.358 7982.1624 12765.0219 356690639 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4346.3147 4505.6045 5324.1563 2508.8047 86115.3572 5900.4498 4692.5697 4105.1829 2956.0662 7035.9913 5891.3747 6520.1592 4723.8008 6549.6708 3129.3192 2888.2475 7535.2888 13394.0984 5560.4099 7152.203 2996.8699 3553.8544 3837.0847 2839.4982 7694.5918 126627460 chne Organic Remediation Other Hydrocarbons NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 17319.6695 2544.9304 2399.0914 3952.2884 3708.1353 4738.906 3029.8262 99725.3062 4252.4453 2203.9022 2203.9022 3174.0792 6873.3664 5013.387 5746.5675 7051.0602 4183.3531 5501.8103 2250.7139 6772.1007 2563.6143 4340.9834 3585.3487 5275.1644 95113224 ppx Phosphorus Polyphosphate degradation NA Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 46081.0629 19099.965 14687.4763 14411.9139 11177.0921 13626.7082 12938.3936 7336.8039 11409.2161 15269.5287 10630.9457 291919.7347 17805.2394 16532.6802 17917.4322 7308.2613 7308.2613 14400.655 23650.6332 12448.8612 131904.3516 18025.5279 16332.2648 8882.3341 8360.9862 14988.9405 12612.9826 38948.671 16634.2597 18136.783 10924.402 13050.082 121722.9598 10619.0386 19651.9895 319947648 mer Metal Homeostasis Mercury Detoxification Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 5651.0607 25688.2619 94468.173 1945.006 6241.473 21470.2112 4315.9103 6197.4315 9247.436 4800.549 7542.1187 5183.1205 3761.8952 3761.8952 3206.9445 33200.6335 4708.4273 77063.3849 10073.7351 17179.215 3716.668 7934.3014 8138.6267 9046.9797 18241.3763 6789.4323 5833.4695 5379.8513 7206.8821 6990.5998 2272.9737 4730.7876 271964814 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 8556.563 24791.076 125992.7607 2877.3691 4070.6778 7917.4572 23146.2942 5793.4344 3786.8217 4223.7144 9344.0839 4544.9585 3490.5193 3639.706 5421.8969 4559.7824 9175.203 32815764 metc Metal Homeostasis Mercury Detoxification Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 190370.849 16539.7184 29921.3794 17926.1658 243020.0141 10283.6143 93921.9826 134344.7791 76248.025 74348.5953 59354.5598 132008.2145 1019672.0585 58748.0066 75142.9014 118230.0486 80395.6458 80395.6458 44063.1208 135999.7352 127344.5728 273872.9051 122461.9245 543066.5423 106010.8476 81784.8289 70181.7984 104653.5981 320736.2577 101656.6446 152600.5639 107994.8512 79410.5702 162420.4964 70738.6438 112942.8852 82393828 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KB35B superkingdom:Bacteria;phylum:Proteobacteria; 10213.5567 10177.5997 6246.243 7025.2921 5980.639 72900.9448 5689.9645 17096.639 17096.639 3820.3135 5000.2608 44931.1093 6842.6341 3265.6232 6294.0528 2957.667 8772.3292 21220895 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 26620.7849 27092.7156 3605.4052 27077.5282 4852.3182 5412.7158 10404.5995 127186.0463 17869.8857 6547.7739 7225.0625 10732.4077 10732.4077 9601.935 19247.8784 7932.2192 30207.2791 11646.314 7426.2061 7978.9996 33018.5932 14136.7821 7079.6107 151047.4601 21416.936 42632.582 3579.3048 9278.3684 21728.854 7250.8125 28852743 nasa Nitrogen Assimilatory N reduction NA Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 9975.4329 7775.5561 5561.5024 30951.5367 17872.7255 5138.4735 8455.2391 9938.6309 38017.7695 10551.876 6742.4415 7480.0011 76116.4213 11276.5068 11276.5068 10695.2215 17049.9351 8402.1864 5870.4642 9528.3143 215737.7884 6678.7432 7116.1903 30746.0278 9208.3729 34032.4194 8655.6979 14580.9758 5794.9318 11842.4592 8750.476 5971.7189 21520.4874 333476788 proO Organic Remediation Aromatics Other aromatics Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 80873.3204 52544.1573 19316.9513 16598.5849 18688.3016 7859.6354 9597.2436 18715.9853 17738.5481 40575.6794 21908.0142 20608.5336 313695.9668 31266.3233 21580.0939 22548.7943 37163.6006 37163.6006 27210.0631 46137.6371 26973.6474 12841.144 19685.5961 37062.6224 9172.7624 24173.7122 24398.6394 69380.4603 45205.9005 22940.634 27184.9138 23684.7036 22299.4599 26488.7395 15061.4862 34630.9148 319743665 ben_bcla virulence NA NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 27047.0675 13128.7073 11309.3487 22386.5758 19199.9693 30222.7802 14403.446 46670.8854 19874.2578 220248.4471 43284.1293 16560.6001 11422.3749 15591.0406 15591.0406 8981.8161 42714.3029 276249.0054 27494.8722 37378.3576 8991.7683 9821.5828 21379.0504 25328.9925 27786.1334 119255.0754 30664.8936 35893.2954 21650.1767 13530.7384 25879.2574 20647.5551 15869.3135 256007524 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 210715.0983 310245.5999 30402.3623 8267.69 11155.5234 11241.8912 30539.174 12193.4505 123193.7079 33024.0504 175647.9563 14427.2285 37965.6541 12354.0584 13081.4232 13081.4232 7681.9921 48721.0479 19685.9667 22011.2875 19724.4799 14099.3611 9943.0697 16708.6259 18489.9798 8374.66 56933.5585 33526.6714 21057.4996 10630.3989 11669.7778 15007.8448 14616.8839 17229.0588 285310019 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18104.2498 16967.4566 10420.5989 12023.2057 14047.6834 10160.1016 83434.0745 17488.6174 18847.2338 18291.8122 460330.1418 15048.7567 14360.2497 12132.5752 23339.068 23339.068 10411.6539 22781.6773 14135.7308 16802.6671 62959.6064 21376.6546 7775.9844 11653.467 24031.4069 10697.8348 62270.9069 19495.9017 23907.774 8061.779 14213.7973 10289.8351 7076.655 32329.7181 302882339 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 71831.3149 14668.775 18741.3641 25043.7952 8611.551 9162.0921 18301.3084 253478.7662 39920.6988 40296.0416 15964.1997 636605.5489 26175.4511 30660.3253 44443.5978 29130.4439 29130.4439 18034.7251 34601.0664 39916.4244 11163.3552 20705.0166 31906.5095 10391.3468 15116.7044 83911.0695 16437.4254 56643.2159 33254.3864 37570.1565 8500.9116 18485.0993 21708.871 8421.5059 51474.8417 385258366 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5543.8939 4221.4016 6079.5758 6723.7909 226364797 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 33207.7315 5014.2537 12522.8782 2808.7981 5689.6588 4679.649 4271.1634 75322.0904 8278.9818 7994.8258 18384.9469 10479.7605 10479.7605 11381.4953 14991.4603 6290.1842 9647.2693 10823.9364 8881.7105 5108.7476 4940.0667 6652.6882 9201.2399 14078 8230.9511 14466.9271 3347.2851 9317.6395 10046.225 3435.0183 12130.9125 70990042 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 19198.7472 11255.7591 14981.502 29745.9243 15214.7955 9785.6017 14933.6441 17309.6958 13754.8202 12263.3904 30488.7832 18785.514 446851.7085 21787.1852 29610.4909 28831.219 49953.2619 49953.2619 9163.3813 33368.4656 16048.3257 29171.5672 23701.694 21866.4047 11118.0448 16323.4175 25808.5495 18855.6911 43585.6579 27865.6373 29841.8734 10283.2269 17673.0684 12225.2686 11346.5636 19069.6693 262380271 ppx Phosphorus Polyphosphate degradation NA Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 7514.9745 6180.966 6311.8129 4063.2162 3311.7243 5326.9392 6190.9832 3788.3005 121546.9048 8157.3023 5381.0475 11960.8371 11960.8371 4797.1414 9571.1458 5516.3411 6301.3786 7156.9311 6623.8965 4427.1325 3814.3616 6334.0816 4103.3789 12803.8422 4157.2769 8240.0353 3781.7992 4737.4458 5059.6012 4618.5279 9252.2757 242791515 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 4757.3439 4900.1697 16178.3458 4057.7412 11741.5961 3983.2209 8531.9004 5053.1595 84369.4691 6548.4497 74193.1583 2454.1129 2454.1129 2794.0154 25970.416 6427.4943 4435.0608 8374.6843 6512.3747 3884.5362 5775.0819 2608.2565 48256.5396 16726.6859 5793.086 3089.5372 4152.7339 6586.2994 6986.8737 6473.3535 323095079 amyA Carbon Cycling Carbon degradation Starch Prevotella oralis ATCC 33269 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oralis; 25694.2872 15563.3527 14955.63535 21859.17905 28339.3922 5373.0272 104579.841 16275.15475 12012.3334 259017.0236 22915.2837 14990.8389 415354.5427 27631.9548 29817.9117 28775.4403 18044.8551 18044.8551 13512.73005 26322.9385 18963.48905 33852.40965 19402.28565 28822.6341 13525.4766 12028.12415 23167.8501 8925.4652 36912.68325 11334.8908 28098.2644 14953.6187 14364.5726 15575.885 9283.29585 31053.82765 85688078 B_lactamase_A Virulence Antibiotic resistance Degradation Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 11058.2819 26308.2855 10781.2468 35171.4253 6611.5491 13317.0436 5199.2586 41482.4974 10427.6168 8778.552 324956.3673 9474.084 13498.8529 10799.8106 6569.4693 6569.4693 7834.6185 21757.6483 10052.4086 9986.4122 22270.3052 29368.2475 10100.2422 14335.3367 13683.4061 11954.3379 26342.0539 23765.7099 18667.4168 15681.3011 13339.2265 12754.3049 9192.0211 126731.7464 71001696 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 7604.1593 6299.5789 72101.5665 10073.0349 9863.8883 6970.8769 13185.8276 4515.363 9077.9474 12480.6724 6632.4779 215176.4175 13384.6389 16781.8003 30740.117 10327.9812 10327.9812 6723.7674 11525.4743 14595.6166 4820.1194 11897.9728 15111.2192 3396.2509 14171.6863 23028.5928 20091.7093 272990.6745 14287.9252 23547.2178 6791.2552 8475.1912 16587.5131 7716.5656 12283.5558 374656342 vgb Virulence Antibiotic resistance Degradation Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 14707.7687 6937.5388 8663.5004 183100.7296 23147.2752 18094.5712 21658.634 11576.1945 28477.2378 15610.9847 18654.7702 298343.4651 16624.1059 39699.7016 18472.615 10608.4622 10608.4622 6649.0168 31916.004 17911.2934 14666.8711 29835.0161 16685.1418 7085.5224 12362.3848 32256.5602 15719.6048 66097.1349 32562.9198 36311.7064 10893.4061 15883.4858 24405.6338 11823.1489 11226.3499 363421380 ppx Phosphorus Polyphosphate degradation NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 35975.3657 42201.2564 266811.5097 62403.0695 6631.0797 83733.8517 26577.8471 12977.4948 15474.8183 15987.4728 16175.8386 292161.5288 22231.1511 17477.189 30674.5741 18870.1383 18870.1383 14710.5293 46324.5906 20128.6685 101417.5985 56971.075 20490.7322 15533.5143 15378.3568 20318.0503 21460.0586 55188.9245 28100.9711 31521.5222 14301.6501 18827.4143 24054.2211 136064.4641 19606.137 149143059 amie Organic Remediation Aromatics Other aromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6101.6486 5359.8496 8080.331 17639.6779 6759.5139 3251.998 2730.0188 8217.5444 4126.4947 2838.315 139817.1714 9974.388 8338.1509 5527.4861 2617.0005 2617.0005 6163.1985 11083.2526 8967.7128 8324.041 8067.744 14823.3836 4072.1979 4206.0614 10968.1869 3588.0416 16137.3891 4095.5858 10628.6862 4619.5075 5414.2823 5324.507 5095.4445 12444.9561 386358357 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 111827.3578 100018.9545 117039.6422 38263.0982 41932.167 66370.7131 260078.3712 97101.0997 95059.6502 46828.9699 133345.8078 1217008.286 113454.6385 98958.0872 118302.7273 176244.1283 176244.1283 24932.1597 124213.6827 150969.6383 70699.5413 266104.5387 29272.0292 43356.5015 65717.0942 119110.777 102391.4223 153375.8132 196677.97 103143.4234 114207.0147 92235.1398 101464.0513 153620.801 174673.1595 158523640 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 115366.545 35904.985 158243.7705 64159.0833 46081.4051 2118140.6052 216104.5155 281471.8594 39084.1032 38246.888 52675.876 74256.449 1087002.3414 68242.7184 56019.1941 55476.3364 35440.8705 35440.8705 33087.5872 77724.3983 50435.2134 156644.8925 93084.0326 230805.0675 70943.9509 36453.5449 243430.4962 72259.2613 117892.9853 64407.7595 252191.3472 139300.0784 64605.4193 51808.8838 52713.1483 76264.8953 331694494 pcpb Organic Remediation Herbicides related compound NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 122095.9392 29353.3767 116725.1321 52314.707 10647.3471 33249.8885 130126.1598 30005.3086 71962.4863 40233.5626 70051.426 1323370.2772 115534.5555 120373.0294 65183.4211 52983.7741 52983.7741 27934.3106 95342.6057 127214.6612 36995.6032 63651.3822 106107.8136 69655.4762 84910.8429 95469.3642 152617.155 248223.2027 127094.9832 86051.219 122970.5422 49570.5292 145724.238 33008.5411 43543.9199 326316653 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 7606.9449 3657.7105 7784.1974 6556.9205 2435.0445 73360.9844 5175.3558 3613.3842 28949.061 8727.8931 8727.8931 2982.8982 10825.0302 6126.0878 4222.2248 7186.6237 3249.5802 3677.7401 6580.8724 10267.4288 4928.5671 6955.1986 2511.1215 3317.9429 4546.398 3696.5833 5441.6968 77454729 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 19614.9082 4014.7789 3711.3232 10226.2055 24638.4461 21318.5768 23013.1232 116516.2607 16733.1009 27807.0032 130420.7271 13224.8406 13224.8406 4997.8147 53987.7189 9892.1702 17893.899 26215.6731 4990.7756 4400.3068 7972.044 7301.1596 15681.565 30679.659 59914.9945 16474.7496 4292.4477 8903.5478 27490.8044 7878.461 21230.5334 54016529 xylg Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 57496.2134 104301.5734 19232.9322 18323.5126 26829.5599 20207.1327 25499.6635 14466.1187 15066.9323 59154.2565 42089.2922 45219.4699 325359.4625 23392.8918 54517.7193 89233.6792 37620.5486 37620.5486 13005.4045 56654.1415 21131.1143 68552.6791 79005.8605 96463.61 17968.8514 28061.5272 69848.1941 28245.7912 70386.8275 42641.7264 56293.1307 19313.1853 84963.6049 42585.4789 17145.7131 32568.5195 388485085 nhh Organic Remediation Aromatics Nitoaromatics Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 5304.8377 11621.389 11970.2253 6378.658 6133.1192 5143.9596 2537.9355 19573.2174 13737.1292 4060.9007 116384.6515 20053.5022 9868.4114 9680.5874 9680.5874 8695.4528 9171.4261 68895.5303 10030.3297 32509.3856 7980.847 5853.2003 74175.814 2861.3362 77642.4524 17406.4627 9376.8303 1848.7296 8441.997 6971.0398 3669.7315 116013320 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9500.4249 8404.8349 8379.4942 9506.8939 5708.3141 6630.9038 3317.4444 9495.4813 12018.1186 4221.48 243145.4413 11376.2697 10512.8324 7343.5001 5482.7181 5482.7181 10148.6818 19862.6711 21449.9822 11256.0042 18747.7351 16571.4851 8396.8684 6674.9657 15686.3429 4825.7367 25844.5641 17897.7617 19632.2052 4546.2658 11173.7312 11181.7737 6737.9577 20887.2604 376383836 alginase Carbon Cycling Carbon degradation Alginate Klebsiella oxytoca 10-5245 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 6190.9789 7918.5819 2836.8285 3073.0635 3449.0699 5763.2358 64396.5835 5139.3465 5142.7859 3464.128 6295.6061 4431.1758 3576.3658 4151.379 8410.982 5724.3072 2697.2854 6227.0061 2106.6661 9481.2872 5449.2163 6757.5393 4904.7098 3555.2909 3861.8612 2868.6909 6937.4839 209401600 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 721232.2854 76812.4485 319819.7944 1398126.8039 287384.336 153834.8069 436959.2484 470047.4159 243108.3502 542319.2809 438238.9861 291059.3627 5941158.6873 213753.2889 367144.7793 536211.6172 378128.58 378128.58 309475.4951 417936.9659 230418.5642 302318.0299 761862.0312 263095.6978 295183.5571 248633.2408 416171.6204 223716.4686 682488.4108 424343.7632 366504.5223 276911.1065 233763.358 279789.5915 330443.4933 679624.0791 302417940 cpna Organic Remediation Other Hydrocarbons NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 7056.8248 19985.6861 10066.1176 16527.4643 5444.7552 3281.0571 8396.471 4343.5586 19654.1621 3536.6647 86113.6627 5188.0798 4829.5002 6649.2536 3403.48 3403.48 3822.8587 8201.5845 4911.4562 3681.5616 5220.6482 6264.7138 2784.6311 8454.4464 2501.1611 8661.5779 4067.5968 8584.6823 3001.984 3786.0463 4944.8837 7130.5561 320160133 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 13735.1614 6224.412 8782.0266 7074.5678 4470.2521 5879.1748 3114.2797 7103.0158 7251.8835 4774.2124 219783.6159 209829.1279 7398.7295 8690.2616 8690.2616 8478.2961 15094.0073 7633.8069 12012.4758 10146.189 5793.5837 5221.5342 4795.8282 10241.2756 15547.0561 19797.5595 4593.817 8558.9872 5629.433 5962.939 5640.5034 4121.4022 10485.1855 114707094 PRI Carbon Cycling Carbon fixation Calvin cycle Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 109521.736 339335.0254 27663.9537 17076.1082 6338.3447 22542.186 11345.4166 7756.5657 41607.1267 29607.2085 179176.1501 12048.7967 27033.171 29919.3244 30496.8895 30496.8895 23242.6462 29706.3864 9563.3624 19281.5025 47980.4958 18081.4466 9641.6651 18704.9019 39844.535 24437.8096 29747.2592 87728.754 34072.5871 9580.0956 34528.692 73134.1328 33349.6347 8815.5806 406718223 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 23009.9669 6929.476 6453.3276 5632.2135 4147.6234 93354702 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 16565.882 11562.3522 18750.4969 19271.2473 12539.225 22792.6928 27083.4674 32745.6418 11311.886 380587.8281 10653.6663 36741.8033 11800.3194 13447.177 13447.177 11251.1374 22948.433 20088.7722 30674.4858 15319.5657 22662.6277 6948.7974 12101.8703 24037.2076 17085.4566 58004.1325 13784.8611 26926.3734 23625.6453 19392.0266 16078.8708 13031.0336 14719.2926 290467867 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 25915.6853 16882.2335 15730.9893 23316.4891 20529.4722 18912.8005 14510.5538 10102.4867 14631.5856 19402.0115 8071.3083 664272.5973 31509.4085 29527.7693 13778.6311 11612.9267 11612.9267 10686.5875 28326.5616 22237.1068 18979.575 28729.8101 40062.2303 9978.264 10908.2362 23997.8739 9109.3572 42902.838 22281.2329 29301.936 14913.2746 13214.9971 35318.9794 12815.978 27913.0194 238060164 terc Metal Homeostasis Tellurium Detoxification Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 33678.5854 7809.3398 15086.215 31266.661 4589.8372 8720.1306 17093.84 25008.0729 24586.4783 17985.4896 16864.038 133627.0446 15651.0859 19938.824 11368.377 12521.3202 12521.3202 10507.8204 52634.3122 18356.1356 27566.3997 82074.7966 17748.7866 29921.2493 16266.8336 23810.7389 16450.5199 65190.6427 18869.1303 31848.5938 14827.0713 25911.5408 27016.8822 17434.3875 33396.807 325964986 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 5484.2077 14071.1298 4348.4536 3072.0539 2629.7215 4374.2684 8042.0934 5129.7407 86690.3687 4574.2781 25601.5283 4059.39 6203.021 6203.021 3344.1622 12668.6402 5278.436 7590.2783 4997.9431 3163.7874 4505.6072 9752.3543 4244.0838 12096.1316 4994.8691 7634.3165 5752.3458 3890.4605 4096.7732 3127.7891 342316510 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4495.5071 2694.2497 4737.1346 16170.0915 5773.9268 3505.425 84883.4393 3929.6206 4838.1704 4237.8027 3426.2067 3426.2067 3145.0982 14936.7823 12188.865 7860.3381 8104.4063 3095.4172 2889.2894 6170.4665 2852.1338 12116.4219 16789.154 11150.338 4212.2624 5341.2276 13356.2946 3628.9237 7580.7707 206679991 dehh109 Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 44488.4386 27203.7526 308898.2282 31729.3665 11838.7146 17303.8401 58698.2894 16528.5122 28498.7297 25184.3697 428172.0903 33703.6975 32008.8717 29949.6088 13334.9513 13334.9513 16430.7912 29902.9135 33695.6406 26613.0964 71872.3061 31342.7102 13298.6357 15290.0849 29823.8689 11956.8408 55043.1225 24218.1561 29670.5229 17944.4327 16680.1028 19659.5293 10810.845 32092.5773 392185935 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium massiliense 2B-0912-R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 683047.3777 50113.6755 102522.067 137680.5175 10387.9575 24713.4992 159771.587 39447.2027 69128.9205 78234.7183 152846.639 1069615.6192 261025.3114 109210.042 99102.7768 47938.925 47938.925 56368.313 103465.1028 67433.2918 34694.595 243159.9741 100677.5797 58038.3505 49839.5666 52156.6545 55792.0316 168101.7469 81241.5855 91398.3534 253035.7959 62391.2132 66239.6593 39632.9381 391524.5266 355371432 amyA Carbon Cycling Carbon degradation Starch Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 11062.3639 4327.674 2297.6703 3831.2255 4013.3574 6853.1146 5423.7226 154460.7171 7860.9894 6382.5218 4802.3861 4367.1962 4367.1962 4128.6792 13369.1009 6307.8132 11438.4375 13200.0329 12906.1319 4828.3053 4045.7935 4055.0398 14375.8161 9752.4556 9598.587 3790.6636 6542.5597 6921.8479 2987.3328 10200.2331 239519233 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 27992.5441 14376.3492 237718.3737 25820.6211 8199.2086 27143.459 182302.4818 14928.1488 17720.2853 28179.2544 23708.9635 316759.9121 36568.5588 41730.0263 25593.3959 33181.0454 33181.0454 18340.7882 35885.1503 30972.8987 42498.1672 52146.2692 27492.6922 20753.5004 27757.997 27113.5964 19345.477 79136.8848 41806.7886 55953.4185 9608.1376 17764.4177 31396.2958 47687.5917 50067.4144 342316556 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 13713.4292 6208.5612 5624.6832 20073.0239 14663.7672 21100.6056 15541.5428 12152.4774 208223.0347 15719.6104 15329.3363 14551.1673 33788.1234 33788.1234 5321.9268 33336.0829 12982.0741 13959.7166 148632.3858 36856.5353 7479.8694 10600.9397 18391.1747 14158.0169 85285.6508 15082.413 8179.5654 14395.7601 23429.2021 37669.89 16439.6114 374582751 chitinase Carbon Cycling Carbon degradation Chitin Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 35877.4907 53850.5784 39640.253 38900.6904 6022.0894 16998.0466 34657.7292 12296.3377 36894.7158 105850.0793 31261.4801 495765.2463 42306.7397 40068.5147 29212.5834 26787.7881 26787.7881 23973.8366 45240.7114 29504.862 20654.959 47060.2829 37056.4256 13968.4627 23771.7889 185794.0241 32572.2592 72830.8244 35297.9196 50271.2593 14962.9701 101777.3588 47022.3284 32688.4294 48484.6331 94470911 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25768.3118 17578.0515 19448.0554 14543.9569 6569.9402 11020.724 26480.9704 11743.8349 15837.9692 21492.323 7172.1257 471705.263 26853.7017 22392.7342 16753.2482 10725.1194 10725.1194 26173.4126 28540.8728 20332.7987 86045.0271 28553.0352 29525.6749 11285.6345 12289.5069 24685.0593 10789.3864 40353.4642 22597.9352 24207.8224 10002.1645 15158.3112 16353.4699 11874.7842 32571.9694 38570178 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 17300.358 7981.8466 46569.2867 6100.6845 3867.0134 7275.8018 8641.2971 11044.1683 8962.4969 74754.045 10561.3925 12300.3006 12850.1768 289102.0288 289102.0288 7547.2385 13318.2611 9363.9492 16158.904 16424.5522 25143.7678 5507.3402 7532.0223 26323.023 3883.9429 110247.6945 12034.4289 19711.5801 5649.2121 7831.5083 11403.7517 5403.7146 7058.6261 154161541 FBPase Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 9326.0871 32405.7794 9232.0516 58323.4809 8145.2363 4908.5672 5442.3523 14883.1985 5735.34 6271.8795 5479.7617 145838.9996 15862.2003 8755.6205 12957.6259 8793.9808 8793.9808 7457.2624 8474.0168 12378.9543 9981.0158 5466.8945 6004.8274 4640.1712 5551.2333 22415.7804 4073.4465 19947.3886 13370.5035 17018.0986 9755.2749 5761.7978 8522.0663 3212.4957 5825.9553 323358077 chitinase Carbon Cycling Carbon degradation Chitin Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 6689.4711 6106.8277 11356.503 5284.3308 7581.1504 6755.0941 2843.4025 4844.606 4987.6248 3550.2834 81987.0624 4011.6889 93054.0256 5482.9271 3796.5954 3796.5954 4505.0682 10026.8158 6093.997 3910.2138 6358.7914 9668.8647 2906.6225 6335.9489 4665.5667 17154.4981 8355.2858 9275.7689 2693.5455 5557.9344 17989.1274 5208.2636 7961.722 218677536 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli CIAT 894 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 8356.8416 8376.3906 5789.7699 19095.7064 3102.97 2503.5732 6818.0051 10449.2798 4036.3993 173945.0508 6397.2325 8703.6437 3220.0866 3220.0866 6158.0699 14187.4955 10114.1609 9185.0487 7641.1703 19198.8232 6340.8005 4648.1832 11997.6793 17445.2877 21674.7709 8958.0385 10316.863 4216.7968 7223.0574 7542.6992 5761.3152 8646.8742 312961545 nirs Nitrogen Denitrification NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 34384.5502 54013.4717 46750.5573 88414.4384 150181.7637 89388.1072 87563.9853 53434.3718 39737.5573 48052.5896 243322.9007 35400.1774 998586.6612 56962.7701 64396.2299 56843.6857 59203.9038 59203.9038 52010.8951 61295.6491 42188.448 102599.5197 82465.1485 73310.4318 88336.0363 39699.0012 68121.1774 32724.2177 112707.3734 54540.0267 57739.099 28298.5186 46892.927 40374.9473 24969.5884 178233.3336 72118614 xylj Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 32133.1771 9506.5115 104254.8088 43977.9451 12035.3837 13282.1641 13285.6681 17828.6617 13427.1818 21291.4327 10922.7014 2849750.4143 15657.8221 59262.1017 20419.1622 18133.528 18133.528 25178.2817 23359.285 12868.3865 12602.8556 29983.204 26174.3215 14995.8771 24029.3125 22271.1121 56317.7872 47146.6913 22051.6817 22959.3739 16351.9897 19228.3045 25269.6377 20912.9772 18296.2418 390615898 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 74389.9534 9564.5183 16411.26 7705.6242 15678.1254 30806.0626 10128.345 8415.2984 7650.1807 5595.6936 139306.2158 9466.0261 27509.046 9066.7596 21561.9662 21561.9662 5548.2509 34752.9825 8162.4351 21633.6806 12134.0138 3798.0867 6895.3457 6596.4523 21947.4457 13965.4171 61818.5369 14538.8669 25271.6241 56551.4169 10765.4747 28303.1403 19010.9733 13555.5731 334364429 amyA Carbon Cycling Carbon degradation Starch Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 21782.4038 41600.7178 31176.9426 483478.1857 10782.7148 15247.1195 15832.2482 7324.3054 13674.1013 15928.8815 476171.9261 21102.4268 21142.2768 53866.1904 15693.8204 15693.8204 18327.1404 28665.2961 8868.4133 76219.1805 20316.3547 60435.233 38034.9108 12796.5341 13033.0498 25594.0376 64442.5013 81781.2203 38177.6397 151964.8299 22960.8399 17397.4195 26720.5755 10038.4357 228005439 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 11058.2525 12982.2956 6406.8672 5883.0056 115282.3248 4413.2762 58975.7223 10453.8869 16302.7879 317085.8878 45376.2067 14357.8936 9281.642 28326.7789 28326.7789 13536.0688 26812.0627 20218.8659 15820.6521 37822.3709 13299.5554 12643.7767 20422.286 19423.2321 9061.9007 42692.1169 24278.2466 28305.5748 13959.9119 23215.0715 17235.5882 12095.0202 12744.1188 29652450 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 353644.6385 13787.5673 89407.8141 111794.0253 79855.7871 14953.8262 67865.7509 210124.1917 107807.1303 107479.1643 231717.6157 131382.5077 4024918.6663 151167.7614 186699.8686 154215.6495 121568.9345 121568.9345 278997.8298 160900.6926 103693.9863 177122.396 208862.2249 232607.3732 80681.3061 88780.5653 97738.5439 78694.5569 287195.425 128738.8259 197314.0306 68869.165 140772.1674 125161.7925 151596.666 161427.0691 113889821 endochitinase Carbon Cycling Carbon degradation Chitin Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 65587.4819 196013.3034 60341.0828 27305.9864 22578.3114 21156.8478 21089.4213 21379.318 60196.1967 29132.366 59393.1568 670949.5247 26282.1855 67551.2296 42510.4694 42965.5998 42965.5998 38831.242 69418.58 19999.2144 24228.2531 65832.3281 110188.1464 31219.4448 35909.3756 31721.0628 22611.8541 84539.9093 47185.2467 36423.4821 17724.5001 27992.823 44986.9735 31289.4324 23556.7605 402843518 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella sp. OBRC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 208354.414 16376.72 100924.9114 65428.211 41011.3442 14000.5058 22870.7021 222017.3606 71743.8061 27707.5448 90294.7055 34856.8182 695295.926 48261.9543 184808.5911 94180.0953 33104.8232 33104.8232 249624.834 67743.2084 52969.3244 682798.5024 47680.2625 25825.7282 25480.3084 48092.8311 35229.3297 55347.8906 86019.4649 42950.5723 58852.0317 57783.685 50004.2332 23791.3534 23662.9449 33998.43 114197669 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 13500.4036 9432.9733 13916.4765 19628.2874 8101.4487 30021.2483 85039.4998 5425.5811 10902.3917 19982.8617 11521.2226 249215.5451 19368.22 16057.4258 16741.4697 9644.7996 9644.7996 7959.3725 29853.5047 34370.993 11820.8784 14895.6022 21816.1765 8629.4113 14478.383 47157.4536 10190.8557 37466.876 20949.5959 29291.3722 14759.7104 19370.1216 21081.0899 8847.1536 22040.7349 7013021 exoglucanase Carbon Cycling Carbon degradation Cellulose Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9289.7418 12351 15261.9828 23889.6147 6538.6093 8056.5585 6824.6076 8982.8831 8662.9836 9345.8723 12817.6338 175847.7318 22131.9034 10967.2401 14335.9999 9428.2282 9428.2282 8658.9568 22796.1505 8188.9949 8214.8723 29791.9334 5584.8713 8472.8095 20199.4691 4499.3532 24204.3495 23071.2095 13347.749 3669.5921 123124.9908 9586.1829 4483.7892 23215.2992 325274692 ppx Phosphorus Polyphosphate degradation NA Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6456.3532 15260.8607 25271.9745 3167.0264 14640.0281 26869.3239 5121.909 97867.7899 5396.1405 6706.3833 8110.7804 6149.5587 6149.5587 17783.0785 20000.3646 251603.58 21547.3409 42625.9382 13699.9552 8189.6261 3979.3091 15631.8446 4306.7644 18224.1707 8473.2398 14587.0475 3047.4962 4972.2105 6457.4912 7869.8089 9922.9099 147886270 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8422.7741 2506.1564 2506.1564 54408.1992 45876.4758 10608.8744 3707.2333 390428371 ppx Phosphorus Polyphosphate degradation NA Thiocystis violascens DSM 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 5281.4996 37516.9448 80042.2483 5782.7466 21792.2205 17073.798 10922.791 7580.229 70298.9923 13664.1305 7802.9991 13572.3006 6164.2553 6164.2553 5528.7335 14728.1676 13968.5185 11180.1703 22305.7139 8578.3871 2805.4577 9403.8205 99012.1687 5502.6503 30867.9707 16892.1078 18620.8414 3845.5997 13923.2658 7336.2988 5070.4538 6258.4984 296254254 soxY Sulfur Sulfur Oxidation NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 25205.0966 14708.4208 17763.2073 25639.9085 7048.9219 14449.9158 31654.0921 41827.8482 17983.8409 23283.7224 14504.8827 378595.3554 25823.1185 26084.5465 104238.5959 15922.2913 15922.2913 15655.1086 26993.0803 17345.2424 24243.5929 24101.9154 43261.1636 9714.7106 23275.7911 27751.1108 13447.607 39338.978 28910.9247 42454.797 12834.0191 22259.2058 13577.8086 12248.9382 20596.886 3157614 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 50136.3777 51540.7092 12017.1316 7047.0622 5617.7156 61280.5413 5966.8903 185371.5385 9091.9255 12011.2125 13107.2709 393460.6728 14355.4742 13008.2005 11483.1265 11033.8578 11033.8578 9262.6227 19830.636 16624.648 17419.5219 18150.7582 10316.1144 10590.5134 9028.2476 16327.0775 8536.0263 36505.9172 16406.0364 15554.4462 6838.1841 8400.0408 9827.773 16027.8714 90002.5882 374434427 nifh Nitrogen Nitrogen fixation NA uncultured marine organism 4260.0321 7828.5529 21465.6957 2867.4754 4320.2961 75619.4646 9654.281 5059.8779 19324.2032 6139.7276 5380.2851 107762.9764 6576.388 3718.1221 8607.4424 6158.7589 3132.8631 13281.8916 3069.4298 162451309 nfsa_2 Organic Remediation Aromatics Nitoaromatics Sorangium cellulosum So ce56 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 81552.9468 20747.5328 73233.6312 55097.9944 78671.8676 33517.8253 47063.648 46209.3934 44436.7625 49856.2304 134108.3603 117670.0003 1446250.2669 69304.9019 74671.8089 141501.7969 120958.2432 120958.2432 65416.3769 81536.6369 50445.5716 50737.9065 74964.9523 86804.9783 40575.9797 30326.5141 66690.752 23962.0299 113092.648 79292.7699 82071.1092 49449.1468 50267.722 37881.9034 25795.5747 204353.6852 91770927 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 17271.2568 17138.0505 21515.3827 13634.8012 16638.9669 13099.8224 10124.8108 16244.2634 23584.3215 8336.4714 484517.1554 33575.4768 22263.3962 13436.4355 10110.686 10110.686 15148.1376 44523.1103 26812.1606 31456.9581 17950.6186 31676.3898 11644.7083 10409.6941 24620.4436 16358.0642 45094.2184 7467.9914 29533.5791 11971.3183 7747.2034 18383.135 19438.7407 34126.9007 270298224 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 4653.061 2906.2762 2079.6352 2918.5385 62654.5456 3969.538 3392.7177 3007.7606 7567.3524 5739.4823 5223.1895 5120.8438 2498.7198 2602.0791 2235.6831 10284.5874 5399.1349 2026.7117 3747.1445 2444.3677 7896.8195 325675740 nirb Nitrogen Assimilatory N reduction NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 32758.3975 11365.1849 13230.3367 16518.831 27889.8516 9036.199 13868.6155 8428.2481 29159.7958 12982.4299 337604.1987 8929.7478 197884.691 31823.0795 18629.8281 10922.1658 12536.1911 12536.1911 12552.9601 53575.7487 16479.7571 15932.98 40824.3436 26692.6213 11348.423 10789.213 21363.9192 10116.4095 42077.5326 18055.1418 22738.1421 7691.0563 10074.9058 19424.6405 9337.6771 35660.7962 59044729 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 30532.7746 8184.1567 17158.6484 2932.546 67896.5981 38163.0569 296106.7418 34191.648 18120.4136 18120.4136 30372.493 116762.5155 269578.379 306521.1226 19381.6308 2191131.7735 92880.0049 11602.8349 16794.4984 63278.5867 33673.6087 19913.5397 5047.0142 24518.2129 17811.5355 266372.7087 1057701.1486 119947761 gdh Nitrogen Ammonification NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 12090.7714 60191.2011 22168.3517 75525.0441 14581.5667 11163.4662 13531.8756 51493.3667 31835.4636 26313.7485 18102.9815 295493.1177 23701.6989 14831.8228 40778.199 17253.4632 17253.4632 112342.301 21310.615 12362.5422 13459.6844 17272.0333 44100.0424 9388.283 11416.8273 37551.7332 9013.2076 30448.5747 23278.8697 23276.1318 34922.7701 13832.9271 63921.3873 6182.8697 31985.5887 291197204 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8251.455 9431.8919 3548.6542 3431.3256 3804.7945 6606.8438 4454.0678 6386.9928 60676.544 5538.0009 3566.927 3566.927 2964.8879 16347.1169 5595.8246 5595.4526 46143.8975 3017.3746 3318.2489 17588.218 4136.748 7427.1087 4426.7054 3530.9905 3952.8041 4620.7772 5675.8411 66766652 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 6209.7438 23185.0097 10113.4115 13001.9409 14679.6522 5837.114 2285.3067 5697.0446 5976.5109 6822.0961 107271.7646 6100.411 7819.1918 212581.0069 4836.3679 4836.3679 3884.5656 10325.9067 6653.2011 6022.3303 12573.7205 9882.4178 3307.935 5063.1163 12513.9167 4055.5246 19919.6712 8866.725 33288.1959 3509.2614 6932.7396 6236.3793 3774.7284 10861.7129 17135268 endoglucanase Carbon Cycling Carbon degradation Cellulose Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 3942.5764 66045.3477 15307.0607 2200.8925 2069.1411 4475.0132 4470.4313 4028.8124 6853.5875 4209.7541 4209.7541 10359.2897 9231.2975 2643.6728 3368.5542 11153.4742 2080.5398 5961.4377 4316.3365 4481.2045 3844.3048 343460641 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 6930.0281 3285.0596 6535.0386 3360.7198 8182.92 5415.8483 2551.5066 2734.9977 3251.9396 2788.2218 2374.3513 4453.8463 328528661 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 35159.7285 17284.4591 25162.3903 28909.8124 13456.0078 43762.5117 17746.7783 37579.3378 37326.4017 14630.6555 427267.9227 36385.3364 41014.199 19067.7017 20333.2534 20333.2534 21526.415 54001.2028 45304.0351 39959.193 47363.402 52358.2321 23645.4436 20675.9796 27439.5861 33522.2395 75594.7542 23198.6298 42221.02 13867.6435 31623.199 32805.3567 23187.2249 36330.8511 211905785 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25143.0568 8357.5138 106006.4497 17380.0042 12804.7846 25767.3618 37293.9248 16727.7208 9651.6447 15310.6139 292685.0008 16616.8262 28206.9498 44713.2497 11346.7815 11346.7815 9925.8501 32223.9751 18157.8298 17031.9231 61583.3553 30040.7873 18154.5206 13559.9984 12875.9631 39929.704 87868.2779 31025.1672 23098.6549 17902.2645 186783.9921 26144.0578 32250.0967 19502.7025 22252768 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 70906.196 28690.6131 69017.1985 51360.3503 57797.2666 22009.1476 503183.0637 48892.0759 35056.8955 79234.1757 60965.427 41103.0516 2666926.8139 81052.0903 76681.745 56419.8188 81033.9249 81033.9249 54805.2528 63991.2374 58531.0496 67019.5295 104035.2674 60133.4452 27461.4239 102504.3129 93497.926 39965.4373 100986.0624 82743.2614 65683.8533 23292.4947 32960.125 38906.3751 30221.7461 97481.6672 311278630 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 24005.508 27380.2349 3466.4847 6099.7139 4694.5372 11402.4814 22891.592 74842.9422 4375.8755 6254.9734 54586.3275 18706.9114 18706.9114 5533.2206 23550.6337 14614.9826 59606.836 21509.8606 21489.2874 4058.0405 7133.5179 5651.5124 5883.6252 13191.8686 12986.0224 27948.1253 10698.2958 16084.8465 11080.0024 19364.4348 6541.4461 354596338 Sir Sulfur sulfite reduction NA Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 8735.1813 1944.6199 3302.0741 2417.0715 6226.0009 96462.0621 92286.5427 3572.1568 21883.0112 1928.7746 1928.7746 5660.7074 4230.0845 4997.8801 5247.4379 8029.9302 3261.6314 6349.2495 3259.072 8339.6847 3730.3967 9184.87 3449.8468 3378.8796 2902.5687 2625.9106 5352.7884 323358599 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 4367.2518 5231.5782 4763.4092 6325.8264 2610.0383 14422.8047 9099.853 9635.335 4028.7078 4782.2705 302698659 exoglucanase Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 5741.5139 6799.5036 7922.3936 4917.8648 2077.5677 43103.1932 2074.9416 3540.7348 4881.5804 87128.5221 7156.9257 9977.0899 14341.0739 4965.3451 4965.3451 7299.8935 7388.6754 29466.9348 10214.5084 6006.1842 11321.4045 4331.2016 14240.712 6573.1118 17540.3883 3379.2118 3953.624 8297.8378 6411.7885 162281747 urec Nitrogen Ammonification NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 21721.0289 5069.4601 48456.2862 7386.1056 9226.7546 5213.3477 6455.6442 9433.7469 6814.5497 7085.7128 7085.7128 5353.1565 10362.7081 4265.3088 13667.5547 4965.4369 6264.4873 4009.9336 2932.5608 5409.3537 11945.0701 7079.0452 6494.5115 4226.7335 4473.6315 17281.4175 9394.3415 297565727 terc Metal Homeostasis Tellurium Detoxification Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 5424.8339 6343.0872 19575.5711 2708.4617 3705.6133 2052.1378 3549.1355 5746.296 3181.3352 98472.0654 5737.3047 5262.1966 7817.2834 5412.3893 5412.3893 2692.8262 6032.3234 5508.9695 6618.6041 7223.1996 2188.8482 3591.3402 10126.1295 2968.1358 10825.6025 6241.8618 8336.1416 2403.299 4241.7229 3798.8043 2335.5142 167957276 amyA Carbon Cycling Carbon degradation Starch candidate division TM7 single-cell isolate TM7c superkingdom:Bacteria;phylum:Candidatus Saccharibacteria; 10392.6234 33525.3748 4070.3089 10293.3436 14999.6143 2249.4815 5300.9827 7910.408 5056.8162 109524.4175 8310.5021 8550.116 8475.6535 3998.716 3998.716 4392.1967 16668.4231 7210.1513 6588.4619 16500.5009 20352.7524 3117.2776 4379.7644 11504.3252 11054.8051 43074.9987 6458.4925 7982.2004 5416.081 5144.6352 5637.9198 7338.874 10102.2673 343427025 glx Carbon Cycling Carbon degradation Lignin Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 17070.3763 3145.0813 2524.6336 6950.2454 10793.5479 3863.1956 54797.7348 4315.8152 5106.1465 5181.2279 4066.735 7826.613 6892.3582 5800.1276 21514.9075 1751.8497 3245.8695 4944.7027 319796597 tktA Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 85599.0113 11437.4604 87266.8605 9568.2505 53662.3391 7944.7024 12586.3772 31979.9982 28178.3704 96761.2066 60586.5779 12020.7403 1665084.6408 35749.0278 22308.3296 16180.9779 50561.7514 50561.7514 11739.8643 30773.5234 15170.6029 24126.0254 904241.6685 27697.2705 9566.9171 10707.4393 26726.8733 11991.515 80735.0563 17416.6534 23297.3726 11322.5549 14031.8479 18158.0205 15259.4644 25426.0081 256357533 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 20415.3353 40573.8125 8783.6564 10047.9028 36316.6561 22374.0443 21399.5279 36480.6668 19312.6441 488344.1892 33890.754 15428.5686 46393.8087 34473.4222 34473.4222 24641.7625 59998.7176 14632.6701 30287.3818 76601.6437 23430.6937 15372.7384 20525.9322 34670.9342 38943.4568 104160.8886 28849.837 42922.06 12779.3844 25775.1185 23840.1101 19634.4881 22240.9099 297625688 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 48201.5218 12797.4494 6060.3859 40295.7973 9073.8183 26322.288 31092.1982 7580.607 61508.2166 501113.156 33084.8169 1024631.7066 25902.4498 24086.9417 50412.7956 30292.1632 30292.1632 12974.3331 149865.8144 32298.3531 38463.6954 40704.7235 29361.0308 9113.3886 24182.7394 68722.5021 55200.592 160555.8718 38304.2187 36415.3217 18516.7304 24609.2871 33792.431 27942.151 19664.9802 407981711 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium hassiacum DSM 44199 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 11482.2184 9229.9145 4317.4381 8377.3169 4829.9973 5351.5382 2706.1256 9331.6882 10426.5197 3983.9571 216005.5877 9389.7966 11862.7894 6680.0303 5502.4457 5502.4457 7437.2871 10282.7601 7551.0757 6973.7309 10409.3514 17151.5982 3472.0719 19729.1938 10488.3807 4688.8266 18667.6281 5168.3287 10337.8132 4149.201 6493.8334 5547.8093 4563.3139 10938.0918 359832716 mer Metal Homeostasis Mercury Detoxification Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 23974.7592 9490.6118 13942.0959 32926.186 4695.9585 7954.2613 13246.4665 5598.0114 16409.9178 24083.9768 11575.41 374166.7396 19389.7583 46131.8346 21890.3039 14836.067 14836.067 17082.8724 32077.7258 21446.536 27597.4853 27467.4836 42228.4218 12354.7776 14060.0023 28938.8814 12713.5623 36330.9408 24468.3038 28488.86 8403.5499 13276.8055 18275.2696 10040.3036 26288.5216 118029817 aln Organic Remediation Others NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 48519.2378 11014.4396 120342.4978 9773.1072 228284.5238 179116.7542 23194.4325 28838.4721 44152.0665 204302.6752 46781.0154 43396.9626 1345610.1811 57789.2003 87073.1418 83063.6522 58006.0694 58006.0694 190265.9521 51436.1911 53746.5248 29256.9869 58231.1099 25509.9162 18080.1358 41416.2812 146366.8575 27153.0273 238350.2595 52658.2409 65923.9541 21625.6589 38423.9827 69585.0056 151639.384 131341.511 169126475 mnp Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 27460.8734 4242.6685 4242.6685 3205.0242 3026.9821 83837205 dmdA Sulfur DMSP degradation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 30814.1819 13276.0235 25936.2636 13979.0657 13886.4168 14976.0844 13445.2197 17707.9416 42319.6682 11096.7646 1075869.0574 28565.6968 25540.4285 14882.1283 31888.3629 31888.3629 22088.7529 38115.1226 20274.1653 27222.7778 41641.7699 36512.5378 22662.6093 13890.648 29168.9087 13922.7418 60101.4716 31064.9461 31813.9548 12426.1336 15156.4435 18415.305 14682.3264 35325.5982 209967303 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 54742.5934 15255.7431 847206.3587 87575.4011 172546.8365 52475.1552 45759.3425 97077.1389 43224.4597 35488.1123 108720.3222 27323.844 1211483.5005 256578.4699 45586.1689 74673.6588 49473.9142 49473.9142 31858.2324 95855.8888 45688.2519 33836.0302 47027.705 56065.8365 29985.3995 49362.0565 99371.376 20270.6274 565647.0653 61462.343 80207.4875 26032.9115 40193.1224 30832.5152 44134.9766 130305.6026 317114745 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 5906.8721 13674.6514 16106.0782 8967.5111 4258.2157 12759.5836 7800.8196 4808.3937 6055.9546 3778.8238 2957.9019 3733.421 17608.4325 7416.2068 2071.0635 5498.7423 4976.5322 169617509 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 10516.0665 13582.3429 4688.8593 11457.2447 12785.4082 8740.1743 9696.45 7931.5926 10784.9244 10568.1766 170441.8908 7856.8622 51146.016 10213.8362 3867.0762 3867.0762 7089.3454 16075.5759 7896.8074 7474.7693 14930.2843 12378.0999 4469.1542 8375.9788 11057.8035 4836.2227 54164.273 5934.6134 16282.7921 6184.0749 6086.853 6890.11 6219.1535 14653.766 335359137 dehh109 Organic Remediation Chlorinated solvents NA Thermodesulfatator indicus DSM 15286 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 4535.1675 2906.7046 3588.5226 14753.3102 5473.063 3228.0806 3347.4277 6431.2646 4310.968 29671.5882 9648.8512 4464.6132 2687.9617 3921.6049 5861.627 2577.4836 8016.2783 6443.4963 5713.3669 3560.7637 4136.3175 18190.9644 88807731 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 17751.6128 1487915.8828 6839.6605 11301.2648 65527.9449 8089.5381 6126.9876 3552.788 10389.8458 9788.2715 17612.448 406004.6881 18607.1022 11391.2088 53650.1354 12816.2959 12816.2959 6077.5909 27297.2855 16283.5883 14378.3128 12079.0512 38537.299 5162.9357 14661.5984 29051.4768 10581.6736 49279.3565 10814.3049 123443.0884 18754.6131 15263.4463 12617.055 11593.9316 11916.6517 157912051 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 34431.1552 20682.5905 28941.6027 35435.7657 30642.4662 14891.4339 96404.2085 32593.8121 28168.1679 31888.8746 36839.5919 26679.5892 830507.3853 43844.3121 40179.908 31408.0959 33076.0606 33076.0606 27883.5262 53907.7254 35401.0838 35560.8127 43148.1881 48898.0826 20394.2762 13877.5747 41674.7596 119045.8328 108359.3131 44135.2226 37263.9718 28510.2802 19667.7237 26798.361 20090.7104 59742.8693 6540593 fcbc Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 5483.8555 5188.7382 5307.4479 5307.4479 4200.5042 7944.0502 6880.2263 4488.3939 19214.8278 2813.631 10077.0189 6292.4838 2195.3555 3700.7931 112463925 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15211.1852 46720.3946 5235.78 6960.6235 94296.4138 17118.0205 2700.1702 17853.2722 6465.2709 27251.9588 9193.606 16968.3231 478587.3737 19448.5223 26605.3029 62819.2302 41503.0462 41503.0462 59109.3102 24286.1521 26070.0112 8464.2561 9523.4224 12196.1544 6152.2849 17544.8263 37296.5794 20611.4874 160714.666 45258.1404 32568.1074 12058.1949 31284.133 24776.2338 9972.0503 94644.6364 55231681 norb Nitrogen Denitrification NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9690.14 59321.0163 2287.1071 3876.6631 3653.1441 3622.8283 13490.9369 104815.5244 4958.0444 23599.2831 7248.8347 3750.698 10997.2432 8657.2701 7431.0826 7443.6094 6971.2397 3229.268 20886.2589 14258.5792 2661.5499 13483.3735 9331.5395 9484.9058 1881.4048 3639.6914 7928.9639 2994.4006 6536.4602 334684258 xyla Carbon Cycling Carbon degradation Hemicellulose Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 9014.6857 6030.5534 5852.4569 4660.4774 6641.9096 5998.3714 8555.1686 8884.7707 13747.969 157187.4183 8014.9815 21829.5022 5684.3145 4429.6834 4429.6834 5969.0163 14981.4184 12135.3133 8148.9152 14783.2433 14453.5824 4504.696 5945.6299 25312.9034 8089.0688 22787.5029 12238.4271 45329.4868 5121.0774 8959.5661 6445.0887 5993.6675 12250.8204 302475323 vgb Virulence Antibiotic resistance Degradation Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 7769.7891 7314.7481 9248.1457 7547.6726 2547.1154 2995.9667 5313.62 7797.6671 2651.4104 113552.4739 4592.5641 6897.7494 4381.8733 2858.3248 2858.3248 5550.4575 8732.5863 6151.7883 6054.2336 9972.081 2526.772 3145.6393 10159.872 3251.4645 12414.9299 5085.2318 7919.6294 2094.2409 4851.0181 6328.5003 3274.9479 373851807 alginase Carbon Cycling Carbon degradation Alginate Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 10898.5364 10467.4733 16956.2311 13340.0267 9136.3267 5394.9916 7541.0052 11110.4293 27191.1832 12416.2178 7671.4755 169516.7858 8937.1483 13575.4451 5035.3442 5072.3994 5072.3994 7960.7249 18622.8924 11360.4616 14653.3419 27199.4665 32767.2556 7324.6693 6566.0126 11301.7089 6010.6226 24415.1072 8462.5446 15286.7745 5241.8743 10543.6782 9996.9995 5931.5685 19336.6517 310761112 amyA Carbon Cycling Carbon degradation Starch Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 9245.9517 8726.9147 40641.64 14804.9899 5321.2119 10550.0451 10545.5047 14802.3612 8644.2439 450765.1394 6585.3914 45933.7312 12854.1701 9314.3617 9314.3617 5069.0845 9629.6783 16334.6037 8039.0505 18363.2558 29654.3436 2348.0727 15389.0884 36925.1815 5448.7841 16816.2115 12503.1745 23510.2365 33274.3646 9560.8459 14616.6415 2797.9446 6127.3298 258540218 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 5164.16105 13099.3468 2378.835 4314.06945 4876.5324 11455.75875 3658.0201 85479.1418 4339.9011 5439.97285 3679.16485 3679.16485 3442.2848 8644.18275 4267.39775 4941.91225 6424.09345 11339.61635 3077.9585 2957.8656 6506.2369 5184.00515 6607.7199 3314.7486 3896.45715 5070.0927 4240.1088 6165.50465 183580532 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 30205.5574 18794.3587 4995.2068 9220.5696 7038.0676 4247.7197 34484.1474 2989.0381 4718.9506 37562.9653 17799.7583 163238.5209 16687.5142 10184.9453 13393.2239 18861.9411 18861.9411 3534.067 16535.6264 4544.0814 10628.462 10996.896 7790.8458 10696.0502 9743.7011 7105.1588 7979.8342 19486.6439 7634.7725 11120.2759 4627.3212 10516.9942 10862.9214 13129.5035 27645.0067 388538481 arsc Metal Homeostasis Arsenic Detoxification Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 9227.6338 7478.3734 15340.5578 7640.2099 5821.8216 5991.7765 3177.0024 4620.0711 4329.5266 2181.6146 133093.5553 7564.8311 7170.22 5169.168 5169.168 4985.0582 10239.7378 10409.6056 7539.991 16759.3702 8716.7905 3682.7992 4018.5091 10206.7921 4493.9193 15978.434 11397.3659 9507.0604 3748.708 3278.8553 8194.7046 4482.2321 11386.0837 159475477 actin_Viridiplantae Other Phylogenetic NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 19832.13465 35343.9624 6062.7568 16312.9234 19477.0562 15857.60935 26928.7392 699270.32315 27173.3728 31090.03025 14434.70205 14434.70205 13655.59015 36910.5484 18986.7698 21420.9556 19459.44155 52348.55475 19842.3054 23294.42655 16318.1014 22953.0307 9844.7394 25611.9775 29800.42385 18225.3118 31874.20845 239907808 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 7435.0407 9434.8796 338749588 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 12381.9889 77846.7368 5739.7524 14910.6453 20171.4869 7393.2405 7461.0109 372285.2905 42602.2412 12152.4155 11445.3984 6026.5631 182218.3029 20868.1289 12529.8298 14344.8471 7483.804 7483.804 6605.5746 19364.9554 9363.5923 9185.2528 14916.5907 11474.8677 5857.2511 5228.6977 13642.2892 4904.9073 24405.6422 14268.391 16867.9198 6056.0125 7588.0279 7137.5823 4840.5818 11256.7235 262201881 amie Organic Remediation Aromatics Other aromatics Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 4170.5105 4780.9888 12386.3099 4843.4481 2506.0434 3484.356 5237.1006 2831.9206 4008.6892 4726.9906 91192.8162 4493.014 130320.3056 7533.8365 7533.8365 2741.5104 8250.3699 3448.138 4368.959 6262.6749 10683.1801 6534.435 5896.8906 2167.4122 5125.1479 2068.3756 345636031 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 56910.2978 10862.533 31686.1054 48926.7893 184681.5236 17926.0348 21729.4889 19872.512 97664.3888 59955.4356 50681.1903 19694.7941 497040.2415 39687.6412 75618.971 39736.7005 39344.7279 39344.7279 348123.9898 48954.1204 30791.1591 15923.1649 32457.4683 437690.5544 14500.2641 18890.1983 41538.4992 43996.5628 55184.8301 20123.2551 41454.092 14387.3219 22596.5464 21052.9902 15665.7202 39244.6855 67942375 pmoa Carbon Cycling Methane Methane oxidation Methylosinus acidophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 5917.4934 7269.1662 10654.6655 6033.4824 4389.1025 8367.4767 2549.9192 4533.792 49408.1223 49408.1223 4436.7156 9805.5182 7592.201 6691.7969 5154.0401 7446.4892 3401.2219 11506.8001 7407.9896 10260.0638 11462.4115 7074.8361 24041.2449 3614.6314 4237.9855 7611.5744 2374.2426 9423.6989 363643317 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 4263.1038 2586.9621 3943.1083 2789.5611 4635.6906 3878.1515 5797.0287 6279.9716 4471.3231 3219.0883 311098480 amyA Carbon Cycling Carbon degradation Starch Streptococcus downei F0415 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus downei; 11965.5495 14054.6717 14099.8061 18118.8725 7579.6007 8294.7917 6499.4349 12618.1589 11060.2253 6215.3475 324563.6916 11900.3178 10092.807 12589.8949 5446.0192 5446.0192 7130.5196 20388.7884 14240.3355 17155.3788 19912.7349 20690.8201 8015.099 7610.2585 17316.4658 6355.0066 28096.5496 22583.5722 18638.3021 8518.0557 11277.946 9486.6106 8888.551 19084.5059 27351656 nitrilase Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 14565.0368 10353.5731 8302.1795 5903.9551 5862.9612 2853.7813 5079.491 2758.9347 2758.9347 2971.4148 26949.3931 359756510 xyla Carbon Cycling Carbon degradation Hemicellulose Aggregatibacter actinomycetemcomitans RhAA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 14001.4155 15824.6891 4976.4811 5785.0741 7566.9406 7206.9997 9583.1194 27961.9105 6139.7979 343398.6027 20227.4803 12598.736 11088.5243 5712.9896 5712.9896 5571.8873 17601.6674 14983.2449 17472.9953 15335.8651 10908.5784 7589.9658 14998.0785 13350.1795 6411.8481 21844.3567 11206.448 16946.23 6852.6681 10567.496 8653.0456 5217.9083 14580.8797 324316882 cda Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 8097.4215 7872.1872 2135.8343 6874.7211 4735.2174 2629.3344 4852.8656 5054.7194 15246.2517 15246.2517 2903.7279 6284.8644 17584.837 6277.3122 2681.1687 5378.7849 2396.2625 10911.1848 3904.3874 10448.9343 12107.7598 10961.2854 7466.9461 5760.826 145236908 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8270.5885 11234.988 7712.8042 3330.0527 3129.5599 5351.0655 5557.9087 2711.7396 72810.3975 5524.0427 3846.2875 6713.3438 9385.7263 7034.6546 7388.4221 5048.8775 6089.0247 2416.2827 8284.1582 3739.6765 13286.8017 6745.0792 7503.9904 2527.3996 6078.011 3459.2935 2953.3619 8724.8096 67525865 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7098.12925 12126.0626 8538.7464 8096.9434 3122.61565 1966.5217 4434.5274 13407.4302 3714.8826 54184.8669 5090.2718 7535.8362 7152.4438 3382.1001 3382.1001 2924.8747 7472.8257 9221.9094 6697.0436 6631.9789 8261.6273 3822.2814 2991.809 2278.6025 12081.4222 5240.1227 6705.507 2062.4751 4536.6408 3921.2433 2646.4631 8521.7745 2251108 amyA Carbon Cycling Carbon degradation Starch Pyrococcus sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus; 5549.0859 4233.8241 14413.5989 6403.4529 4324.0517 3337.2396 3547.7416 73179.1334 4317.4843 4152.2587 10379.2387 9709.4605 9709.4605 2859.2211 29403.9372 5652.3731 3698.8355 7589.8938 10027.204 7490.4993 4911.1374 8709.3292 2220.6399 3913.2324 302693623 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4098.3415 14918.8114 19551.3084 3118.14995 2103.337 12284.3302 59837.2114 3937.3402 7191.51 4204.7727 4277.9982 4277.9982 2747.7833 9747.2423 4379.4783 4946.3452 3534.1065 6126.8247 2067.31945 6524.5014 5091.5983 15378.4863 2776.9094 5065.1693 2569.0235 5831.8717 149210941 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7218.2275 33051.3079 6154.9257 1911.1069 20211.7178 147227.0567 3910.7863 4394.3903 3615.9092 3615.9092 4430.8068 6704.7519 3393.556 11054.461 133188.3462 6905.5333 4084.2215 4993.6214 4552.5155 12416.0761 4979.887 2160.1829 7121.861 6311.2837 5559.9345 4942.2763 317057991 mer Metal Homeostasis Mercury Detoxification Collimonas sp. MPS11E8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas; 51619.2272 2444077.3389 331059.0929 254520.2238 91101.2452 15411.1112 27842.1633 8288.2451 26019.1501 34596.7553 26107.8209 557834.2088 61940.3587 238734.7221 64040.7527 26279.2947 26279.2947 66341.8807 92848.9273 27684.8953 25470.3226 37715.924 29089.5539 20023.5946 21836.781 66147.051 18531.6381 125263.4364 56958.5275 69270.9291 40079.7312 57792.9693 49748.2733 149323.7855 44610.5539 242240028 nifh Nitrogen Nitrogen fixation NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 536633.2292 164816.3239 29263.3891 134758.3351 48727.943 219312.0687 30218.6283 315389.1395 42343.6308 104909.3117 41510.8537 1110065.3599 41391.0113 62181.6138 102486.5537 44013.8462 44013.8462 18831.489 114227.2881 52144.8341 65862.2116 61934.9201 48855.4285 33948.6375 42310.5684 305047.671 36026.4033 203540.5114 487486.5539 41710.7641 22347.1252 34347.3098 34903.1903 23524.1281 387980.1557 227496239 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 5395.2407 4112.1155 10536.1198 8261.4472 31103.1387 3240.4701 4191.7388 8773.1714 5687.5174 5687.5174 8164.3543 9211.2512 4083.3569 4893.0766 5499.8439 3454.1228 3924.1571 10241.1186 2545.9456 12285.2189 5009.7126 7897.6098 5177.4576 4116.9651 5523.5112 306528634 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 181864.6576 12781.4597 495623.6126 51393.0292 4347.5535 7929.523 7167.0483 7167.0483 3408.2952 5885.4458 4766.0888 6971.1105 2819.81 4693.1598 8445.7664 2511.4449 12793.5147 4470.5108 6022.1147 1789.5987 3839.4507 13363.3221 7585.8741 83814744 linb Organic Remediation Pesticides related compound NA Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 12166.732 6382.9 14604.6134 12671.6088 397301.9293 24190.2584 6157.4031 10302.2027 8418.3399 12097.6203 224839.9568 13019.161 32861.9263 29569.8846 13465.666 13465.666 5330.3196 14659.0306 11958.7916 16871.3539 33003.0451 6501.8963 12382.1808 9525.3812 19348.7193 26912.316 28424.218 34359.3837 16584.6611 10758.3886 11132.0091 138207.1387 7698.7754 9958.4966 336399736 nrfa Nitrogen Dissimilatory N reduction NA Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 27567.6326 7247.875 33601.651 48679.8539 24800.7788 459355.4465 12055.6498 21267.4692 12397.4211 25118.5472 198292.8104 244744.0377 18812.0246 43176.286 16285.4224 23571.7387 23571.7387 62152.2096 31196.7164 25673.9639 12301.6354 20834.7877 39175.0844 24867.1179 11994.6495 70986.4511 46037.3773 74084.8996 33090.1264 28623.0677 13469.5049 23559.6332 14452.3841 10321.0706 16162.1802 256688532 terc Metal Homeostasis Tellurium Detoxification Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 15733.8587 14757.6955 9899.9068 11369.9494 4596.2064 4962.7707 15073.1254 2861.2775 4090.1523 5026.2801 5277.3367 87333.6268 13128.0995 10051.9793 11183.4784 14831.7388 14831.7388 4562.7395 12776.9307 7375.3402 14647.2058 15850.1123 6088.0542 4876.6009 5435.3166 11119.6905 5606.5868 19399.7605 13685.2921 12863.0949 6556.9448 11782.9061 7201.4487 4282.8551 28361.2837 146406868 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 140764.9083 19026.2094 83233.8734 62336.1901 65849.7548 27905.6039 33615.674 153088.3758 90097.5467 77718.1874 98757.4115 115618.4451 740042.8722 225210.0503 64632.3851 160531.4608 71389.2611 71389.2611 81455.8452 82150.5648 102091.0504 80922.8092 88994.6487 70051.9481 67613.3079 120404.4192 67105.8816 95828.7714 235246.0233 88565.8363 69010.3655 37285.714 48605.4654 81672.8225 69888.1184 201143.6399 91696580 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 11277.5329 6778.3895 10223.4659 5261.8377 33219.3374 3932.7211 13239.4203 9054.6896 4310.0896 124220.8484 6149.8313 8787.6225 10520.6642 5117.2002 5117.2002 30842.2322 11723.5713 7831.9136 117614.2417 8666.815 7350.7484 4460.9098 5697.4837 12245.9426 5129.5155 17957.704 13810.5777 8070.3674 4592.6597 6029.7856 7337.1728 3568.7825 13881.4906 119951520 mer Metal Homeostasis Mercury Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 30223.0834 20722.236 23466.8091 10780.4408 9331.864 81728.0599 11629.9139 44088.4471 21227.1999 27756.2861 268559.7584 16089.693 24399.6058 30441.0104 31869.0335 31869.0335 12088.9817 36854.846 22118.0533 33585.8068 34158.3894 28543.9314 66478.6454 27577.7957 20337.1481 13616.4955 78501.5461 32770.0854 55450.2775 9851.2214 29050.4001 20575.4395 24597.8572 41824.2753 359770743 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 6510.5566 17630.5029 4947.9397 2519.3093 3615.3014 6200.6385 77337.6143 4063.4648 5963.7069 3197.9047 3197.9047 3284.1965 9435.0961 6063.6221 7284.6608 7695.3909 4018.986 8949.4472 3464.153 11102.4212 7908.9646 7651.7974 25968.157 3187.198 4370.6775 5699.8109 9644.4341 309307455 glx Carbon Cycling Carbon degradation Lignin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 4570.1983 2815.676 6253.5351 8593.017 8830.5898 7716.6446 7716.6446 2911.981 6330.2075 5470.8168 2732.2169 9463.408 5110.9334 2027.8994 4713.0533 3667.0409 94312103 nirs Nitrogen Denitrification NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6265.807 9556.6392 5222.3513 4131.7694 2333.2198 7051.4342 6702.3557 5210.9234 89219.5552 6516.4042 4651.4419 4561.7685 5435.3429 5435.3429 4084.4734 9860.5192 6342.112 7450.0662 12694.1513 8034.0487 4304.6837 4289.7638 7077.8537 3372.5401 14256.145 7528.8966 12856.5698 4095.3838 7792.4681 15783.1965 5284.1439 10828.1292 118019751 bphF1 Organic Remediation Aromatics Polycyclic aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 48451.9818 20694.0898 5812.0813 16831.6792 21139.8524 6663.9109 8057.8367 10847.9007 14129.2167 12674.4935 18412.7548 11345.4106 226976.6141 19279.9094 10954.6195 18972.6113 35404.4266 35404.4266 9826.6955 23849.3871 17472.7366 12920.3498 16018.8993 9932.5115 14428.9426 13571.0178 25650.6025 15087.8831 38339.2282 7881.2527 14541.0727 13932.7463 11935.9862 11018.8965 9983.2605 13536.2445 78093542 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7170.1534 8547.0934 35900.4982 3522.3595 14434.0895 11191.2737 5473.1345 24542.0972 2810.3037 2810.3037 57521.2544 8766.7909 3945.2665 4928.7986 10953.2885 2747.0334 8652.7334 15449.6762 10057.8323 19376.9755 21594.824 7744.7511 3266.7985 9425.6185 12811.794 5098.3673 46371007 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 80307.44 21971.533 79926.6862 66892.0314 59248.525 329494.4268 214536.8495 52799.5008 70702.5208 56580.9793 98637.3939 380907.3557 1307335.5622 103299.165 66756.5267 165832.0028 78012.3791 78012.3791 54892.1197 103196.3233 56408.6662 145675.2663 86231.0899 180395.6162 47908.4051 26765.3234 78966.4221 55050.1563 151331.4842 68569.1851 223545.2147 36011.6124 56973.1435 56274.7917 43258.2546 164382.0282 288862601 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 67630.7214 3428.8285 5626.2087 3207.0109 1932.3747 1932.3747 2581.5788 7576.9738 4187.9424 4572.1403 3695.0212 3451.9495 9281.9155 2921.2301 8787.0723 1846.9536 3700.3247 4954.2093 4131.7551 15387.3599 258575423 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 5480.8002 10805.0627 6929.3674 26331.5266 18474.8067 3162.5664 4786.9891 4863.8771 4575.0813 5558.9669 151192.6058 24066.2868 7549.4884 4246.4343 7657.487 7657.487 4279.798 61184.4619 4760.5413 7162.6384 3578.007 46238.9647 29812.5633 25518.3186 845883.7611 7487.6421 14039.062 7420.0307 13752.7656 9558.9189 3739.0514 6472.6088 124488337 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 82168.6417 50446.3006 240795.9929 74225.675 26328.2327 35654.5708 40432.1817 159150.494 38440.82 161151.8255 50896.0716 63704.0843 1615517.3417 105773.9131 174986.0685 139005.531 89760.098 89760.098 484895.3639 86411.6083 50172.2006 95616.4833 340983.8347 63415.8158 46484.7445 39835.1968 190293.0963 81134.112 209481.5133 96250.269 114551.5525 47890.5854 70580.0942 68645.0303 51384.5624 271606.5942 114307370 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 47289.4866 11142.8002 15607.4295 59705.4371 23130.4092 19073.5625 136271.0379 57491.5469 42601.4888 80995.4433 50769.803 38591.9661 815006.2034 28723.2148 35791.6958 52449.6387 78917.249 78917.249 15157.8529 57955.9255 28724.8159 30623.0321 35488.8712 36640.8166 18304.1196 22450.0232 28654.2573 26535.495 215482.6306 25100.2493 42654.6514 18733.612 16458.6674 24343.1506 17916.3022 40842.8142 296426155 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 27969.8026 8159.5911 14122.7543 84261.2079 11663.0018 11141.0482 25494.6688 16951.2704 47388.3346 28284.5334 28494.8255 343751.0793 23588.243 48019.6093 66532.8328 19121.0227 19121.0227 9736.5257 33317.0604 19994.1357 43488.0112 47552.5138 21737.9532 13629.6981 19582.1684 31331.3147 20178.6975 70664.8514 22550.6267 37864.8471 29409.9389 21214.2257 44135.7303 17364.7964 60953.2318 334730693 linb Organic Remediation Pesticides related compound NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 30312.4853 13909.1265 5237.0304 7196.6708 44664.6429 1618312.4594 9981.4427 78599.0806 13430.7498 10589.3668 36853.4553 25030.3364 2327330.6675 15935.9968 23984.5703 33526.6894 52756.9292 52756.9292 15516.9671 48848.1227 8717.8361 37026.6786 54755.059 14967.8361 25065.927 22626.8331 26970.5425 13658.0087 72311.9843 83575.1771 49597.0388 16198.1267 37329.8602 36238.2603 14170.1565 63759.3802 19552382 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 26775.2221 14623.336 22369.4029 36951.5129 22091.7038 226494.4846 29043.406 13520.0467 18324.9243 27084.9826 25747.6813 526680.9049 23645.003 25604.0719 21500.1026 9202.24 9202.24 15942.2794 40544.9673 20370.7624 33246.2519 23877.9269 65887.7265 10589.4148 12054.1433 33658.5395 15262.9699 53455.3673 25583.1944 32118.4844 44341.4134 17390.7332 22138.5097 71087.3208 34154.5273 325177881 amyA Carbon Cycling Carbon degradation Starch Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gallolyticus; 14820.6892 147454.7526 7062.9703 3205.1394 6927.4347 61445.1096 8037.9723 9270.1063 3032.1608 3032.1608 13260.5018 5606.5672 2268.1129 4448.3103 5626.8963 12498.634 14472.5983 3610.8413 3044.2197 3029.2357 6103.4401 334128506 nifh Nitrogen Nitrogen fixation NA Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 75552.582 29998.9659 37281.8448 67271.6679 83231.7256 23464.4987 476028.8425 74264.9505 45096.8499 55829.8333 51477.1536 49007.0323 1432174.2868 68100.2803 85617.1204 79673.3454 60772.5189 60772.5189 27988.5122 77757.8456 40933.5056 58022.5892 65613.5236 62939.6717 32055.5665 38892.8543 69486.3243 64288.8566 315952.0965 51818.3101 63940.4141 33815.0788 41375.5839 50380.4653 25922.2131 59728.741 403655455 amie Organic Remediation Aromatics Other aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 11775.1348 4712.5602 32397.5617 4514.6505 9084.1458 2787.032 7960.3019 9463.7739 7726.7983 111263.26 9668.5861 6949.5843 6837.7586 113220.0071 113220.0071 37018.4109 12922.9784 8993.5079 7521.1463 8340.4061 16630.1195 6107.1557 6459.782 13437.5786 9440.704 27684.8911 9522.3615 12859.9806 6705.1518 8474.6638 22688.4337 5598.2541 11167.9972 288943522 TIM Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 5424.9013 17710.1088 10038.35 13112.0637 7174.1974 2680.7529 6079.9038 4945.4045 56933.4766 66079.1569 6479.973 6996.2218 5399.0308 9097.8288 9097.8288 4814.5603 10222.2066 7941.3645 4157.6246 9006.3516 7081.3691 2767.3286 6071.6551 13354.159 3705.577 17372.0891 12686.2402 11863.4011 6648.4368 6537.916 4182.4062 5843.0348 13737.5543 167352366 dmsa Organic Remediation Others NA Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 5244.5135 12323.1796 5513.2238 3675.0771 4880.586 17031.7362 89229.7749 4540.9087 4432.6694 7643.0628 5321.8824 5881.2246 8096.3033 3298.5497 8207.5903 3910.8482 16330.1219 5784.8794 8266.7678 2973.4991 3896.228 6621.8173 3098.0173 116610444 mer Metal Homeostasis Mercury Detoxification Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5774.5493 7570.8217 3113.9765 12828.9989 2851.5672 6914.7838 9996.161 12396.5094 140113.2795 12171.2993 7410.5654 11475.7405 5808.9168 5808.9168 5384.0729 12161.7967 6865.8855 8164.7661 10899.9366 15038.9499 5720.8599 5893.5507 9958.7634 7819.4317 22894.3776 8982.0784 35272.588 4543.6365 7065.8062 8984.1299 4956.3354 14580.7431 157285724 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4371.6645 4213.2405 2606.125 4296.7646 3663.3847 5864.4086 3400.4727 57075.8123 4551.8374 5128.1565 2588.4425 8238.7636 6482.0798 5036.2457 6697.5331 6974.1042 2818.3891 2482.5581 6635.7301 2977.2156 9714.228 7088.5958 3066.3658 3463.4775 4011.533 3107.0228 6417.8137 381375655 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 16198.6093 10927.7134 10218.2666 14120.2132 5055.2299 20672.1147 19824.9621 14429.8309 14283.5729 23069.4181 12295.0386 175090.896 17347.7585 25139.8556 28721.3922 21790.9972 21790.9972 11522.556 26104.034 10212.5456 8557.3655 20999.0171 16143.3946 8341.8107 10335.692 25431.0933 19018.6557 28753.273 29749.2964 24012.9034 5156.9183 9043.803 9092.5779 8145.4996 20352.1243 93353557 phn Organic Remediation Herbicides related compound NA Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 18039.0005 172745.6427 6282.0873 30012.1132 6761.4961 13648.8017 21895.0382 6417.2994 14628.2021 27070.3635 14457.7311 302957.1561 26499.4982 18844.0849 73927.7298 17136.0587 17136.0587 16202.6415 39776.7695 19362.3359 37830.3571 20893.0907 12069.0582 18121.5871 17520.5594 24323.8304 12248.1851 50339.8732 18837.7169 30517.6945 17859.4626 22909.268 27296.4965 16690.6059 22234.3453 226347002 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 129114.1314 53040.6127 115346.9941 139857.8804 65476.8806 28439.376 120985.9931 100506.2973 85059.9144 73898.613 88969.6019 72735.1063 2175708.9846 134787.7011 190994.2749 537696.6487 115647.9045 115647.9045 49935.5955 130467.4438 96498.2319 482165.7806 110487.2541 102965.4151 56638.9058 58295.3502 110566.0427 52292.9098 208027.9382 182651.1826 130450.7077 142920.196 80467.1409 86477.6094 223260.547 92748.2189 381198826 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 4784.1983 13588.7843 2703.6139 2222.6361 2222.6361 10439.5798 4748.3789 4298.525 8954.4751 74420896 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 8040.2465 13825.4547 18516.2595 7275.8119 11534.949 5129.3812 4853.6065 14413.0379 7572.0124 11133.8218 139686.7507 10185.3258 12845.1775 22363.8709 5899.1595 5899.1595 13942.3638 17873.5061 7307.0744 7560.4315 10202.8964 16072.3543 5127.5877 9237.8153 13916.0594 7027.3615 24113.9143 11478.2774 15076.238 7940.5383 7704.0926 7997.6071 4604.0093 10820.7202 331698085 linb Organic Remediation Pesticides related compound NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 128014.6536 14580.2598 55404.2137 45106.2687 92490.6225 45806.9716 88234.1979 56747.2343 36758.6975 72132.9404 115861.1574 65700.0823 1582826.1085 80556.8386 88393.3267 71340.5453 65058.4407 65058.4407 90550.941 106299.7227 72545.0976 79693.7627 82670.6758 428271.3482 51398.4871 44589.1186 93129.406 115782.1965 215944.1564 94808.7442 183625.4276 52034.1342 73353.34 105346.7176 116098.4547 86789.7009 298263912 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5443.2718 6130.9594 14907.7054 3507.4453 5623.2048 15021.2489 14862.5566 63357.5767 5779.6115 6970.2403 6106.72 2657.5223 2657.5223 4642.3117 9696.2269 11855.7782 7154.2 10043.2475 5439.8132 3324.5788 5727.8797 11668.8451 4318.9354 9938.792 7004.9081 3801.4793 3906.1943 12596.0524 3815.0471 94310131 atzb Organic Remediation Herbicides related compound NA Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 29157.8799 10700.3163 7196.9438 22538.1861 7071.2796 15140.7653 19611.052 9171.0171 14011.8183 21400.4066 17257.8674 451058.8489 30142.7136 28212.6478 16240.2922 11589.0146 11589.0146 15032.7523 40949.0997 21089.6255 23606.1132 120647.5082 18479.1151 18309.2028 12719.4734 25099.8068 20782.8688 52078.8107 15810.2028 35101.1441 30048.0373 20430.5842 14760.9269 63953.0757 26854.426 77459186 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 34900.5142 37040.6004 15951.0041 17834.9023 11599.7449 8382.9517 13063.0044 31903.0117 9865.1709 19340.2572 39854.2741 61753.0159 340299.3167 23161.7415 50282.8686 29198.413 16517.5325 16517.5325 17446.6 76358.1924 32924.0888 45145.6386 88877.3736 21476.5022 10252.8512 16847.4932 23204.0756 16015.0415 58500.2809 22123.7362 33667.5858 12631.1201 18805.4434 17907.9248 64052.3749 30811.219 157285567 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 515824.4009 165181.0469 115997.0863 42552.3208 86024.6438 35887.5034 61071.7007 325684.8763 204247.0718 121913.387 170049.2225 94954.5014 1175026.3048 123395.7743 195613.7367 205668.7017 160182.5821 160182.5821 53329.7655 202514.1784 70140.2417 126289.999 286860.8338 174685.0036 90505.1409 72166.5387 142999.2624 77888.3079 244445.2381 75708.488 177216.5869 115970.5691 100425.7854 156380.0888 162854.8711 190670.4354 242207853 p450aro Organic Remediation Aromatics polycyclic aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 109338.3205 64144.8312 110679.904 153010.6574 109514.8827 325386.8608 295363.6177 128664.897 231117.3307 90739.5784 183580.8986 71536.0249 2288568.4011 332242.0549 108387.0357 138298.7215 71929.7114 71929.7114 105667.0822 115838.8341 74426.8821 187600.0822 83851.5683 125446.9832 47698.0445 63346.1335 93822.6179 62268.2259 226987.6117 136293.2059 103257.9669 87436.9399 102665.8853 99306.5162 65474.0952 119026.8823 323365294 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4988.1973 4299.6136 3329.8186 5455.7004 15098.9028 88053.9917 6946.8952 4647.2164 11893.0132 11722.6214 4629.661 4334.5023 4178.3325 6858.2028 8369.0443 4431.0106 5320.1641 4464.6381 5677.8706 12884.5345 189337689 atzb Organic Remediation Herbicides related compound NA Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 8641.4235 7215.526 28862.4028 50830.4716 6084.6638 12983.0399 4442.0513 2734.233 6238.4122 9589.0743 5023.4885 129842.4039 7432.361 29470.8301 8270.9713 6270.9636 6270.9636 5085.7302 11445.035 12332.6483 10578.6291 40470.1577 17038.0661 6460.2269 47836.5595 11864.7826 5365.3691 21016.7477 15410.5923 15161.1862 5729.7132 7144.658 7259.9306 5853.065 11266.6624 114195550 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9023.2501 33440.3286 15257.5138 6593.1307 5476.0633 70671.4242 37009.1894 2399.9718 2399.9718 4534.7275 9908.4798 4842.9146 3908.8908 724218.9227 2349.4795 9273.8037 4867.3759 8718.8523 2245.6008 6415.2316 21320168 pcag Organic Remediation Aromatics Other aromatics Acinetobacter lwoffii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 50203.9128 46281.8268 19136.0374 64530.3664 82808.1756 12460.0449 230699.3736 29776.5123 101319.3327 14604.7656 33589.3031 31614.4158 1287403.2824 128053.0038 29288.8611 35627.2768 67642.3591 67642.3591 53816.5523 50668.0047 24195.0983 44780.1258 75025.9916 67396.0464 21748.8999 72471.5125 36263.121 24576.1704 72175.7423 45786.9635 34188.3392 36694.5335 33793.7444 41401.1235 26864.9838 26817.5622 54778327 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 13404.6606 356879062 ppk Phosphorus Polyphosphate synthesis NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 13114.4716 7584.8033 4753.65935 8915.9457 5513.7739 6424.9967 11839.1599 3686.7989 11374.3586 3918.8161 7681.62715 9730.6336 20661.969 5293.6337 5293.6337 8906.9625 19843.8792 6686.57015 271290.4773 9404.86615 11976.6714 5530.883 3799.2765 9213.06335 17575.0311 7310.1311 15438.5407 4627.57105 4813.5059 7942.3896 3561.8724 17188.2115 73762870 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9032.3422 7915.4625 10985.3035 10903.1248 4276.2655 3962.0389 8122.9268 8110.333 5806.8438 9178.1494 121565.3577 8121.6927 8884.8851 8925.8368 5990.4584 5990.4584 4297.9605 11755.5241 6872.5662 19168.8164 8836.7571 5587.9441 8875.8477 2529.7391 8781.191 4182.8931 9886.0958 5690.9347 8551.8034 3069.7903 6223.7399 8497.0045 2502.2635 7140.6574 156740928 fumarase_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 26300.796 7613.6944 6094.8301 21778.6356 14068.6084 8362.2269 82675.5713 45961.5944 21462.7982 22477.8242 24685.0426 383882.4017 15650.021 29581.5129 30471.5871 23532.0688 23532.0688 19327.3843 41322.5335 23806.1488 187779.3768 39535.9408 17641.9133 13995.2611 22887.3455 57769.4592 20679.5324 79553.0764 56763.9808 33677.9141 17016.2599 21395.1675 29173.8051 18319.6774 32403.1956 258565189 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 18988.0302 54782.3408 16954.3432 34542.4761 8269.3849 19502.5748 55659.954 28841.357 15613.8953 16664.2958 20463.702 447056.0178 20059.0445 63042.049 27811.0225 13544.8764 13544.8764 20591.8374 37265.0011 30266.8647 62411.2091 35775.656 31175.8754 11511.9329 13223.9756 20897.574 14509.7117 69097.0601 16580.0767 22456.7477 20496.3824 14548.463 18180.8253 19437.5599 26435.1121 332180962 nifh Nitrogen Nitrogen fixation NA Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 7152.3377 38351.4236 3896.5865 9638.2692 10032.3888 5793.3108 4734.9934 7148.4782 111576.4781 5942.9269 17919.6416 11356.5687 11356.5687 3091.3502 24337.6684 4470.9586 49706.0182 29523.1489 4373.5098 4720.5254 14522.6363 5505.0957 24875.311 139212.3522 28412.4944 8574.5366 9785.4918 10877.0165 20643.9199 4252.9125 5638.192 262315689 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 14771.5087 57093.08 17822.3458 13055.9229 6494.2224 18285.5227 17296.3015 16707.0041 11910.192 22793.1383 13773.8072 327507.8974 20922.8388 20339.3875 26212.6139 18392.0339 18392.0339 10440.4735 24751.3545 20108.4449 22026.5045 21523.5074 32383.2779 9857.114 9317.3348 20549.9684 10294.5654 30689.3693 10010.5287 20341.29 8601.7128 17188.6787 14585.3555 12062.0015 30199.5335 90107179 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 12274.0237 72635.2856 10975.7177 3188.1897 14301.1858 12674.2414 26834.8495 5291.1283 5915.7407 64191.3051 3633.0782 6654.3148 5184.7918 5587.0921 5587.0921 5348.5992 10727.9578 3886.5284 79801.8107 14774.2508 4169.9072 7869.0406 6164.1308 14893.7007 7345.9948 12815.8291 2870.439 9334.487 7386.2497 4412.5581 9327.773 388445107 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 13475.4617 10152.425 13291.7458 2531.8343 5806.6833 7411.4399 8270.791 150723.6101 6512.8364 7034.3004 19801.6871 5318.6722 5318.6722 7044.1425 11013.2124 6715.2092 4202.3481 12706.7406 11524.0878 5034.57 5514.0284 6253.2809 4391.9969 16796.2018 8150.1661 6875.8093 10555.9063 5561.8976 12738.5519 8524.6677 6901.8043 85698852 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 43391.2248 7008.5131 32584.4879 15000.4576 4879.5631 44438.9483 11398.3655 7864.1751 10637.881 12042.7635 9895.7851 120210.0889 18934.921 35574.4188 6685.5875 10891.8508 10891.8508 5771.5561 22491.9538 10792.1669 13200.9842 14080.1872 8568.4633 8110.3589 8088.1895 16607.3016 10143.9401 30884.9019 14379.9467 16310.1715 6436.1617 13374.6017 13203.3247 17534.1628 15784.8828 170690694 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 14155.7109 11295.3471 9453.4525 4075.3303 4857.5195 2152.6279 4435.6306 6106.4851 11717.8901 90703.8219 9136.0698 3698.9471 2382.245 2382.245 2882.2698 7719.8242 4870.0767 4889.1699 5863.6179 6667.9264 9812.3468 4503.7283 43511.802 9968.1398 6552.7166 5263.046 4498.5146 3785.2733 3796.8819 8711.56 357044834 rgh Carbon Cycling Carbon degradation Pectin Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 31129.1568 56140.5508 38151.1427 9420.4095 5775.8545 5420.5698 16305.4912 150908.1091 5811.5488 12488.9649 47834.978 321835.2307 8237.3609 20369.2146 24758.2715 33357.2707 33357.2707 8963.5596 35162.1106 28396.6016 24590.691 51233.3383 10158.6937 12901.815 14319.0989 17034.7153 5470.2341 37561.0069 37227.2823 24820.5067 7472.4636 32473.224 14243.3751 16926.543 15599.252 251846154 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 39334.4656 11564.1143 28932.824 9199.1439 4431.7159 18883.9882 41881.0851 7092.4917 17078.6926 17006.5715 21717.5967 306301.979 17976.4934 21314.9316 36059.8009 30978.0078 30978.0078 13299.7499 44175.028 15964.3333 16738.6205 21862.7847 29226.1442 8669.1849 16605.8616 24738.219 8449.9101 55337.8928 17565.5057 26599.0939 12590.2709 20506.4264 57683.1714 11283.8657 201947.7551 163738355 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 26092.1443 21827.2902 14079.388 166924.8209 17378.3902 18577.6702 75353.7669 16333.5155 36827.121 24824.9679 35521.0492 446914.1957 35431.3184 36195.2039 55331.1938 18612.381 18612.381 16532.7976 101165.8421 28635.6741 103765.3261 39458.2292 27731.1927 12428.7556 13323.0283 73490.4425 27262.0351 100908.68 45448.9993 43336.0744 11252.5351 20978.7061 24421.7557 31604.413 45257.4588 21648295 dsra Sulfur sulfite reduction NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 8615.5444 29039.5369 4219.6508 4760.3438 3684.9483 6685.2696 6958.1422 4486.8326 17412.811 5076.8909 510908.8063 5413.2782 17359.0016 5605.1387 4783.0974 4783.0974 9157.3755 11920.8023 5742.1425 5458.0571 7512.2004 12903.6133 27078.2006 3620.8532 13440.8012 8176.3604 19753.6904 7102.4243 12970.8153 3473.7055 6660.0053 24548.9731 6615.9976 6807.1069 218659620 catechol Organic Remediation Aromatics Other aromatics Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 213343.9417 26905.9726 16841.4901 101247.1636 13745.8069 663187.5142 86614.0843 16526.5016 25980.075 46340.2126 43443.0608 1489438.8277 66502.9279 60641.1505 98643.8187 39178.5595 39178.5595 28054.6667 80518.2726 58779.8824 54415.1762 51330.995 39337.4611 30941.6399 48002.642 164199.788 37389.3966 105385.3384 61731.3264 71951.3169 22815.049 49547.0237 44630.6722 20620.5693 47755.2362 219130936 hsp90_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 181380.9853 23809.9161 41501.0719 209242.9824 198059.1372 9924.5723 134795.8216 46374.1125 18136.783 27311.5239 47175.4189 30241.4932 872196.2715 43385.0954 64687.9078 45460.5466 29320.1798 29320.1798 63804.703 58188.4465 40903.7155 32258.965 50179.3667 77925.3447 28149.0569 39097.9125 66484.3397 40909.7646 517624.5889 237149.6482 52285.6152 32586.3177 30371.1515 52116.0535 34245.0173 63208.5642 396928397 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4557.8645 4167.132 24162.1499 5767.2765 4575.0958 13830.1934 25012.8997 5322.8016 4578.3978 64474.06 5303.7911 6623.3393 6108.086 10390.5355 10390.5355 8946.9321 5334.6835 5048.2283 40044.5014 3621.7595 8631.0785 9707.9586 12239.163 8023.277 2958.1271 9482.8413 22931.058 7539.5119 193086716 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 6189.6197 5085.0406 4932.0997 4299.8413 3081.228 4269.2436 5099.8055 7125.8555 2922.0239 79534.821 6923.3625 4900.649 2578.4083 2578.4083 3952.117 13481.9781 6631.2174 5511.6251 5551.9623 7032.5582 3821.8944 3215.672 7378.7901 2640.7196 16717.7414 6355.7434 8783.9109 4108.1751 5380.8738 5355.1227 4561.1257 7231.5216 54633216 pcpA Organic Remediation Sphingobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 11343.6381 5593.6041 2460.7123 4687.3157 2177.3151 7336.3213 26382.12 5115.6013 65649.2297 9861.7577 7902.6028 6911.8949 4138.9798 4138.9798 5128.6321 9991.0181 9535.4853 7133.492 12809.5972 295552.2246 3800.3201 6021.6294 11739.0755 4831.837 19043.6085 14402.5438 13804.7422 4629.3258 6798.1775 6935.1538 3602.32 9638.8132 260433809 dmdA Sulfur DMSP degradation NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 72312.9069 39775.9634 94413.1151 52833 10152.889 49141.6037 50283.7765 27391.7346 287164.853 74494.0539 154449.0374 2663126.2958 58255.9289 59265.8283 99935.7049 64822.1247 64822.1247 39450.7619 73774.4827 90957.7798 60912.56 42680.3299 37150.346 102653.1616 76043.9154 93180.8562 48451.3397 113475.6999 95865.6928 138096.479 36749.5338 73326.7074 72682.5544 59383.9756 52138.4368 204304175 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 23209.794 27406.1265 85368.4809 56420.5338 12307.3329 11181.4256 23819.763 136492.5403 47928.8185 40528.4848 55050.9775 700890.3435 31061.4183 34229.3966 52059.8455 45961.6324 45961.6324 20520.0347 34054.6944 17995.3838 42345.9857 53710.2655 16255.351 13651.4583 23749.183 29433.8443 22010.5962 42454.9986 22596.6376 34200.0771 19056.6148 26621.5505 19459.2546 8605.1408 15892.0605 329960685 alginase Carbon Cycling Carbon degradation Alginate Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 4785.9437 6252.2754 3455.7065 4327.7911 3520.971 6947.3673 3583.8928 3314.1493 13393.0732 6246.1852 9592.7005 14172.9701 3031.5865 3878.7418 7509.3374 4699.3102 14031.5877 4683.7352 5529.8896 2216.5582 4347.8393 3462.2499 7193.5506 83815285 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 5602.5276 57519.5817 6522.0427 8231.5938 3812.2523 10121.6875 8753.5347 6861.0759 75957.6965 4313.2134 7506.8933 2364.2778 2364.2778 8105.8305 22598.3312 8867.1354 8286.9034 7663.4844 9300.2499 55889.8306 4382.4137 7448.2146 17179.6562 27958.1419 7104.6196 33213.7509 3704.8325 4985.2601 9986.176 4570.7216 8743.2446 6562005 endochitinase Carbon Cycling Carbon degradation Chitin Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4219.087 174393.534 11179.5986 5450.3931 6224.6978 4828.0198 4935.4577 17491.5121 5015.7893 12064.2047 6005.5775 260433826 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7323.1296 30791.3226 94837.3878 11674.252 7605.4759 15006.2595 15006.2595 15537.4162 6749.1213 5075.6386 3515.595 4024.7239 2878.2817 15195.3879 6448.3074 9151.6357 3015.1984 4929.9231 6723.7267 3961.3333 29466004 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5325.9177 17438.7875 30509.7284 5763.5532 80390.1802 6204.2543 4403.9607 2414.1256 2414.1256 3072.0705 5632.7299 24505.355 3546.6577 5745.2088 6765.7451 3509.6301 3903.8047 5293.3494 3127.9465 8352.5506 5124.22 1821.152 3905.8496 5011.4315 4160.0607 161165886 tfdb Organic Remediation Aromatics Chlorinated aromatics Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 14149.9266 11752.3842 5819.0648 15139.5951 35277.8237 8064.4215 6644.6207 5446.5152 16426.7694 14374.5914 9351.2939 971553.1877 15228.0622 13235.5218 26817.1585 14304.5404 14304.5404 7528.0567 27688.5774 13707.5763 9820.8779 9990.8487 12539.7488 5758.9819 7328.7185 20765.4206 7645.6158 35218.2661 20239.7552 17090.089 8207.7973 10577.9673 13980.1199 5353.8779 12514.8522 296169492 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 57346.8687 52062.7246 13142.1368 1140650.2321 8957.3259 18072.5398 32388.4736 15927.1971 230106.7365 71001.011 44784.5388 657047.9431 40072.9214 57186.3371 36848.5614 48686.2977 48686.2977 20631.1247 56324.0869 42607.6792 44390.1325 44609.517 86401.7977 49290.0733 40356.0176 28020.7507 63324.5548 103445.6382 67264.5891 65481.3684 27357.22 46210.9075 38783.0297 23462.5864 155140.6871 384371742 urec Nitrogen Ammonification NA uncultured bacterium superkingdom:Bacteria; 51188.8117 9462.4107 21062.826 14619.4419 5754.9498 8972.4066 19045.3474 11282.2438 14086.9933 26672.1722 15479.8194 298667.3202 21831.5318 20718.3439 16600.4369 14253.9364 14253.9364 13747.7002 37335.5178 17617.6912 18415.6074 27388.4098 31479.7819 8785.6816 10933.0837 19054.3333 13989.6541 53441.0788 20735.1635 28357.7349 13756.4319 14307.1433 13407.6625 45102.733 26196.8892 330688062 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 51930.8669 19956.4155 19639.422 26386.5273 25806.3506 26386.1424 15615.5867 25290.0905 58905.2243 21047.8817 47540.0687 77231.3446 445989.9305 31127.6455 56773.1529 49489.4745 38768.1351 38768.1351 61584.2365 49741.5849 23485.6764 38896.2696 58428.2212 39779.3883 23532.356 21207.0184 36148.3481 15822.5668 62157.9934 31356.0666 33484.6906 15397.0344 23816.6025 24313.9981 16620.117 61613.8977 95133480 nrfa Nitrogen Dissimilatory N reduction NA Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 64027.9257 17820.5826 35882.3608 46199.0364 17816.5425 5949.8075 75314.4689 48395.1016 55361.4956 39782.7452 73610.2271 40765.3698 853124.1003 64053.3584 54501.3215 90013.9104 46412.9258 46412.9258 36953.4805 82123.7006 52544.7552 112914.3094 94829.3137 93538.4534 35380.6526 37821.1124 50160.7373 36207.2889 133380.6334 50741.5804 65773.938 180012.1401 45278.6353 58102.9712 32842.7288 111159.5349 317018182 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7262.1918 6795.0064 4405.8009 7501.6443 4616.3813 5260.7976 7073.5501 104234.368 5345.9437 4096.6523 14345.7775 2240.7972 2240.7972 4680.1842 9015.7492 7266.2845 10313.569 20128.6382 49213.5038 2741.4758 5309.3374 10216.9004 12069.8815 16968.2499 12251.8794 12111.6314 5384.3712 7167.1355 9551.466 5365.2782 10814.1733 145282523 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 7792.6259 4705.073 2756.7197 3949.4281 6464.9141 3296.2865 16141.5341 23494147 one_ring_12diox Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 14349.9037 10501.2022 21717.3452 9962.1317 11513.2451 5257.7042 32809.8053 114404.0523 4967.8485 22791.238 8836.7667 412434.7759 9074.3835 14545.1422 28841.6959 19922.992 19922.992 17230.6019 24242.1447 5557.3523 5329.4195 34229.0373 62436.3974 6110.655 11865.2756 14197.4496 9524.1984 17376.5248 16909.664 22662.5367 8201.6492 11828.778 11455.6324 8196.9347 7647.176 302531543 linb Organic Remediation Pesticides related compound NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 666570.8516 713132.03 439414.2316 1265202.3344 481733.885 699659.0816 536046.7308 563926.1048 258712.8022 464133.8496 455249.5469 355768.6174 14711198.6002 528992.7422 625810.89 954769.6164 630751.8836 630751.8836 239661.7387 467326.6256 451584.0269 400869.869 531749.3089 704388.8672 274652.8359 321568.9282 457763.5873 285199.9497 657820.4224 390246.4306 744050.8616 225486.9853 315828.2999 366391.875 248582.3012 514418.9964 239798395 ara Carbon Cycling Carbon degradation Hemicellulose Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 10009.8887 16787.8439 105937.3832 4622.9274 59681.0234 2996.9238 8770.1819 4336.6673 158014.3745 8954.8601 8807.8858 9417.0137 7533.7491 7533.7491 4837.1494 6698.5053 7802.8399 4175.011 3422.9191 6289.0377 15811.8005 8029.7102 12728.2871 12310.5227 17281.9848 5296.0225 6374.7789 5861.3358 4218.7559 338232373 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 19469.2937 11846.4649 11767.3028 21553.4498 16076.661 10380.1234 19939.7106 15710.2204 26193.1103 505527.1869 13097.0842 14408.8961 84389.1721 21450.9062 21450.9062 8309.927 31664.9389 20912.5728 12112.307 22321.1061 17320.1048 9369.3721 22451.0414 30155.2759 30163.391 51950.3659 53484.1133 32166.6127 12789.2638 18495.448 13856.265 11442.8822 17410.7153 50982404 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8805.4101 6603.404 7531.722 6073.2325 3216.8574 4367.0025 5540.0435 4584.7404 3592.1628 174123.8662 7145.9733 5646.3103 5383.0173 2330.0564 2330.0564 4968.6148 9873.1475 6426.0693 5388.2439 8669.3031 10804.6665 4611.2627 2229.154 9203.8347 3943.5488 15287.0474 3826.6729 9337.4549 6007.3892 5474.861 6281.9399 4373.6015 63696.0088 396928387 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10458.1684 80425.128 2861.0973 5170.1317 8178.6424 9247.4298 21019.4533 6871.2013 9102.5905 18389.1878 7800.746 7800.746 2760.4674 14064.2741 50246.1637 27549.8405 7283.4682 3147.315 12087.5178 6956.1274 3431.7947 9603.6806 5914.7298 20793.5563 4344.6094 7942.9173 114911.2838 5282.5246 7217.9341 50897464 inulinase Carbon Cycling Carbon degradation Inulin Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9526.6461 15141.3506 11084.3181 3269.5748 2323.7729 5544.1286 14417.4315 16736.111 5193.5756 18610.1513 7320.1244 9436.2245 9436.2245 3565.8392 19220.6526 6496.1609 22325.5452 10519.0807 10039.4739 3740.3172 8750.5399 10551.3144 14121.3755 5321.9645 6624.9295 2903.6695 5931.1225 8156.0025 4164.1716 512460.0853 223714272 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 251067.8119 23456.2659 61715.8289 25236.4042 64231.1556 336453.4114 107691.4412 108090.2482 42420.3651 95661.1599 44795.5888 96612.0979 1029372.5414 71087.6002 69486.7635 66842.5278 57454.26 57454.26 41219.8855 112506.7975 101799.7981 92174.3596 198766.3936 99914.8242 44181.1708 47773.8021 71185.1342 90960.6816 373943.8291 86539.2368 97246.2367 47343.3211 80321.5109 72395.2302 110748.7337 70296.2252 145297884 arylest Organic Remediation Aromatics Other aromatics Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9752.329 5794.22 5341.5579 3203.4775 2088.0686 4442.3387 7125.4894 4019.8265 86259.0679 4579.599 4364.026 4167.6741 4167.6741 6091.1627 18627.2142 8278.6593 5207.0809 21354.8589 9827.7177 4462.4465 3287.4509 6998.9101 4327.1356 15567.8142 4716.7892 17103.8896 5078.6158 5833.7507 5731.7947 3280.2926 11774.8071 338738732 tktA Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 6844.2801 7879.5495 90609.6793 5299.466 3057.0195 3127.4093 4960.9068 8279.3821 196837.0494 4808.413 3899.9864 4680.2756 2708.4983 2708.4983 6174.7011 4547.7022 3538.6544 8300.2546 5855.1832 74127.1967 6967.5759 7105.5776 4351.2953 7735.9754 4857.4668 7930.5897 1695.8988 4080.9665 4297.5886 5773.2251 109452509 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6083.8312 14028.3294 8900.1714 13818.1956 7485.3939 9293.873 2999.5491 6955.8472 5325.7078 5518.2959 5518.2959 6337.2315 4773.0144 4111.0249 6280.5092 3418.4372 13714.8957 6975.3993 12799.6966 3503.7202 4251.3197 3140.5545 2692.2937 295827512 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 51459.5219 7165.6196 39380.004 163072.0067 37264.681 16635.7521 67401.2446 15906.8607 35930.5007 117772.2789 71238.7531 1124278.6766 58847.2245 69981.3465 80193.2046 61539.8724 61539.8724 59275.5804 94932.1594 56555.7275 316144.538 38568.765 42355.6613 18904.9251 71553.2206 104471.3957 47015.8177 115045.234 127910.6293 108495.7889 45147.2446 65248.8017 75130.6477 27784.7023 32060.2876 255341452 cda Carbon Cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 8926.2103 6827.4802 9420.4572 7447.7684 7749.2983 10258.0457 7267.4608 3884.0394 5648.3531 11693.9603 4260.5431 279777.3753 8125.8552 13832.6543 8367.5115 7656.8954 7656.8954 6935.7538 17293.5535 11549.3536 23614.805 18911.6234 18970.0751 7691.9523 20029.8854 14236.2181 4897.8527 21119.1174 15192.5789 16219.2568 5869.1381 5754.1353 9975.3468 4791.5156 14000.7742 119898828 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7321.5555 6679.4735 3253.6937 4600.5132 64869.7754 4015.0577 2526.0097 8139.1544 6398.8512 1985.941 7408.7121 3483.145 384090500 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 246181.2467 186706.1228 129641.3702 1037002.6967 75960.3948 59276.0101 274350.1126 552535.2299 185993.9733 315730.4903 262971.1027 201894.6835 15730890.4219 251982.4168 400117.2052 591600.5477 296301.0415 296301.0415 203191.9967 202132.0542 112147.1505 396747.657 221894.7138 187362.619 123108.7601 166830.2791 241374.895 200327.7021 114137.4969 145326.4502 271497.9958 182484.652 129233.4518 188838.9282 118648.6159 199441.6628 56677530 phn Organic Remediation Herbicides related compound NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 108767.255 16370.4815 14106.2532 39742.0456 15527.9063 143890.3869 67315.794 45115.7081 48290.0136 63728.8191 77947.0426 469173.1645 39008.3937 73801.0563 98568.1315 77177.7121 77177.7121 79488.8069 74110.2636 42506.4237 122264.7035 138077.6388 275258.7726 61133.9772 73015.6529 70686.7593 53756.6915 118062.3246 42164.3159 97000.135 25145.3871 99983.9511 56912.3846 41369.9194 235598.3555 50840700 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 30138.8718 11336.7165 14454.353 17860.2983 39047.9547 9977.7943 18787.4649 18399.2358 16842.3771 22916.3806 29673.8256 35555.9807 436210.2283 20630.1525 25687.4371 61916.4816 29946.2949 29946.2949 19204.8895 44945.7204 36861.5967 23771.2305 238701.1056 17270.5957 11583.0727 16380.0956 27452.1804 15444.5577 33887.8297 14060.4053 26639.1623 9315.2747 18741.172 19722.4872 12176.9433 17937.976 163764431 mer Metal Homeostasis Mercury Detoxification Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7571.695 12286.2335 9561.991 9464.3964 7595.8218 5437.3266 8029.4991 23240.4438 84649.0957 182210.0511 8545.8001 8885.0269 6872.2751 4381.7138 4381.7138 18874.8231 25777.9899 14455.4356 11816.8299 23450.2491 7215.906 6571.2618 6231.7311 22307.0179 5743.9333 30020.8817 22351.4476 30367.4466 7150.6055 13409.1057 12169.2663 4475.703 14049.4786 116748490 aps_apra Sulfur adenylylsulfate reductase NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 250854.139 29670.7501 133248.4692 316227.953 151794.7198 51787.0649 165478.3833 266552.3483 233947.3366 143200.5402 137982.6027 101974.147 6396235.4335 366679.2546 246010.0488 239179.0665 155922.4523 155922.4523 91463.9564 222001.3678 132098.802 432893.7166 185939.205 248413.3241 119415.5839 107012.201 217282.1611 118108.7708 381028.3191 191586.4451 175906.9467 132776.7205 137314.8786 139680.9955 123324.8246 227701.8921 339607533 rgl Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 28509.3139 298575.3972 38919.4812 19308.4958 28868.8054 37822.9107 25733.5668 12545.6389 23411.491 15258.0359 324402.858 23782.1148 20462.5269 23100.8128 19058.995 19058.995 11969.7289 26492.6309 14091.1354 32676.6969 20263.0962 17727.7471 10721.8262 10927.8457 22430.8331 14137.1882 39370.906 9997.2206 24541.6563 11450.3838 15865.2189 15017.4349 7101.1272 15769.2851 311069376 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 32854.9921 7552.9022 14859.9468 24270.8353 9924.9578 14131.0791 31848.9461 14997.1643 29538.2225 16818.4818 429883.0327 22868.0419 27872.439 18045.8195 11868.8124 11868.8124 12401.1171 63322.8447 16198.8702 24782.481 30985.6075 29734.1316 8038.3734 9947.4917 28854.8023 11890.5707 28313.697 6795.5534 31324.3137 12995.2458 13995.6792 19920.7471 10921.4025 19736.7346 295689722 phytase Phosphorus Phytic acid hydrolysis NA Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 4250.5475 2394.9952 4527.8044 3874.9593 80380.3884 7050.0655 4489.2952 4489.2952 7217.1219 5380.6478 3718.4842 7172.372 5970.1586 3303.4856 3983.5021 5797.5636 3384.0106 4951.7024 2891.884 4740.6063 3931.1522 4973.1096 77655372 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 16447.8089 9999.8718 14525.6116 19097.2437 6206.1125 12250.0029 8694.8093 9175.3626 13918.1433 21161.3832 14306.7409 394727.6064 17495.1693 13886.7118 10299.9694 7555.732 7555.732 10751.8685 27900.1392 13538.0933 23255.8545 23271.0565 24594.3852 8994.7684 8716.5068 22017.6654 8526.6725 32494.6049 9740.1163 25726.7291 11695.4799 10042.0675 14821.5972 8072.6203 29327.4767 334261828 narg Nitrogen Denitrification NA uncultured organism 5299.8719 5383.5192 7646.5555 19464.9811 3909.0089 12469.2428 3889.466 8206.8681 7773.0364 7398.2769 216886.6071 11205.6183 6458.5996 75034.1586 3093.1775 3093.1775 4452.2788 14079.8932 10607.1998 7280.403 13803.8818 12696.5095 4081.2658 5429.3039 10960.1082 4491.4395 19275.1731 5505.6761 13408.3811 4807.3859 11453.9145 8101.9026 4127.2395 14386.3701 334116835 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 9924.6662 8928.3747 4814.6569 9753.0828 3647.4992 6034.8921 4253.9666 7327.6182 7212.0837 5404.2726 176039.6471 8633.4611 8251.1713 9254.1058 3617.901 3617.901 4534.1648 18502.9579 7500.2101 23483.3147 13616.0415 13954.867 5068.8176 5096.5215 9082.2808 6191.0033 21557.8849 11499.2344 10378.0359 4836.3202 5206.6616 6977.4523 7232.3859 20498.0746 295688549 chnb Organic Remediation Other Hydrocarbons NA Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 8794.92 4609.6568 2952.3811 3386.0208 3800.497 9306.1708 2956.5775 140968.4179 5121.528 9791.9228 4145.2308 3315.9694 3315.9694 2825.3656 12831.6351 4400.714 3754.2428 7237.8885 32960.8726 2227.3015 4921.2446 6509.1211 6137.5697 14860.1124 6984.4577 11765.5463 2914.8536 4704.2612 9007.7922 50864.8136 5406.0673 86139498 cmci Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 46641.6427 35543.5478 28834.9234 30764.9045 28843.4067 9642.2147 24387.9341 27797.629 47039.3196 107117.7439 59780.2816 35101.099 570292.8655 65524.8535 52912.6146 30147.2385 31519.9774 31519.9774 24616.4404 50819.0514 39741.4445 39744.4514 107776.3756 52175.9752 36882.5913 31686.5209 43992.4642 41022.3621 96128.1942 42766.7561 41932.347 16945.0176 23904.123 39358.3981 21301.8987 58976.7003 363414836 xylc Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 5441.0194 63201.0241 5273.0375 22166.2513 10106.971 9917.0783 4572.8575 10242.6981 8752.2707 105449.6852 4487.6832 32303.6267 7073.7471 12960.3978 12960.3978 4565.5468 7282.3286 5159.2693 13927.9541 69449.6029 15074.6823 8093.8643 18588.1478 6122.5633 12549.0468 9061.4915 4156.7 12751.3558 2305.1307 7693.3074 7449.2271 7990.4437 10883.9516 41408718 narg Nitrogen Denitrification NA Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 47124.0071 31991.0975 40415.5905 19534.5846 5995.2024 90136.0285 67566.7452 37028.0921 41203.3264 51343.0734 36013.3235 617004.3812 40789.7131 74195.4828 147526.2242 33194.5795 33194.5795 36876.1128 67819.8747 29820.3575 42501.0307 57501.2336 68847.4812 26513.4275 57476.982 37771.6083 58577.7874 133546.5375 121202.0122 52858.1994 20724.4613 48685.9314 38981.4796 48785.6648 60734.9804 29466078 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 69457.1759 126130.9792 1207294.4174 33782.9796 40282.0972 56762.3872 30389.0022 20622.8739 31902.5016 91745.4101 49252.1753 1057844.4562 42591.1152 46634.4352 46879.0404 221729.5815 221729.5815 24790.106 61794.8293 34491.6749 46891.9976 43014.4181 125538.4314 32256.8761 16903.7149 66559.3359 20340.3868 266991.7985 126307.7081 145459.7492 21287.455 30942.9443 55969.8462 23504.2268 106306.7632 71066165 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 48552.2399 7434.1059 5219.2295 6330.8679 62353.0366 22845.8331 32355.3498 4251.2953 26299.4653 17409.1201 94843.1721 20912.3868 13874.1659 80628.089 11609.2623 11609.2623 7626.7495 24389.2577 12472.1135 16780.7424 14102.52 10190.7134 14330.4628 23139.5084 11783.6585 12746.4859 49228.478 33552.1773 19679.2766 9965.0524 15984.5545 20692.6532 6177.7178 36836.4917 209486732 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19196.7459 18297.0506 157807.3366 14810.517 20186.0377 7435.4787 28787.3464 14877.016 19652.9543 17729.408 228777.6557 26833.2221 12409.5899 19443.6236 12852.6243 12852.6243 11230.7537 24903.7742 13598.2445 18995.407 114371.7121 19129.0566 8104.1601 12462.2119 23188.4712 12858.8707 32472.4898 24910.7797 32794.6361 11812.5682 49375.7023 22403.3711 9781.7142 25363.8906 381196391 PRI Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii WJ10621 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 6951.0433 1771.311 3049.3283 4884.3096 3378.3218 61305.1816 4117.4927 3335.7012 2265.4435 2265.4435 3263.587 9563.2829 6054.4624 4850.1314 4651.8048 4622.5235 2373.3106 2571.3843 5249.1374 2253.794 18342.6869 3534.4714 8698.2084 2884.9747 5616.8896 3820.8927 2693.0567 8144.8839 157918261 nbac Organic Remediation Aromatics Nitoaromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9920.2026 8570.0216 7732.2609 3352.1235 3827.2613 4415.08 5625.1843 11467.4056 3093.1586 122280.0392 35899.6039 4700.0228 5621.5763 3043.2131 3043.2131 4697.1478 14855.721 9101.7922 10075.2344 8525.1427 13484.3799 3790.6413 4727.3454 12693.9877 9035.2329 16124.2923 19481.8993 18152.7069 3057.0418 8560.216 5213.3681 5690.1879 13328.4449 158138877 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8727.5299 9268.9405 7545.4013 8572.4551 6707.3976 7882.1631 14269.9443 5552.1452 180318.6865 12339.3553 10105.8469 9055.3593 3260.9236 3260.9236 5682.3798 16287.082 10406.4748 11409.5829 13690.7989 19909.3924 7610.5263 7600.7925 15033.847 5836.8599 22399.3709 18461.0288 16909.6762 4988.7982 12184.975 19642.5466 5545.8951 14298.9815 289614331 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 23944.3554 15409.1377 27038.9494 44861.7166 18883.2342 13683.2768 23601.7342 11046.8613 18766.0243 208870.9691 15896.1104 776174.6571 27564.7182 39263.1554 31891.4773 21924.4577 21924.4577 105859.6157 44856.9508 46682.5715 19374.9849 18741.1543 43775.6057 16446.7266 78922.4016 43674.8899 17211.5078 99193.9062 57521.3513 50205.0603 12868.9735 27682.5831 42464.953 11834.7491 27887.5799 91689638 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7655.6943 24637.1407 5662.4761 6674.0574 4048.3792 3958.7144 3819.1745 5879.3581 2717.6838 5524.4305 4400.5927 2052.0068 2052.0068 7192.8707 7983.0162 10197.858 4440.6016 10761.5974 2369.1883 4062.2244 7309.6563 339887992 cysI Sulfur Other NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 3715.8425 15228.4006 4870.529 5169.5358 3622.059 5438.4087 76204.8684 6155.9211 6198.3588 86793.219 7404.2761 25280.1306 3904.922 14448.4704 14448.4704 2483.9862 8046.1901 5137.461 3979.8625 4552.5867 3128.8496 5058.9926 4874.623 2839.6937 4648.3528 6684.0576 4058.3496 11185.3818 3866.5391 10219.7145 357385504 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 9019.2864 14585.869 13245.0771 7297.1508 6071.283 6620.3128 5724.2353 3625.1757 121774.6015 8026.6027 6961.9274 8406.7009 4217.9483 4217.9483 3805.3399 13408.8729 7853.1828 7785.8165 2945.2963 5512.5127 13540.0979 3547.4755 21570.1279 9019.4616 34439.7485 5518.2292 4924.8111 4081.1386 2980.9217 17780.1748 338823029 TIM Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 53578.6317 29268.1979 20516.9494 37884.4823 40185.8816 49252.7819 14085.7389 27257.8714 21026.9132 46345.7228 17745.8534 21452.7569 1566879.8522 33149.3006 28362.6501 21168.0965 303643.0442 303643.0442 14019.2184 41254.6989 46799.4011 37757.9954 23035.1603 22426.5026 14951.1502 34034.014 42496.291 12818.6906 49468.5681 30698.5054 36113.4666 19780.1554 13564.4399 58678.0033 10159.8848 17406.3863 357037705 aln Organic Remediation Others NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 5481.7479 5414.802 15377.7941 2738.7187 8077.6972 2406.9683 7496.7587 2876.7996 88932.8777 4545.3871 6980.831 10079.9319 7700.469 7700.469 3297.3009 7630.1873 10696.026 4269.787 7087.8039 3644.4712 10847.0856 3396.2914 12929.9154 9061.1444 8563.2127 4953.4611 4187.0195 5688.2751 3469.2379 333787290 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 6291.8865 7948.3093 2972.3858 3631.2132 5773.3823 4901.6805 2585.4741 83705.9114 6988.4626 5328.4189 4956.3656 9655.2532 8649.6877 345102.7655 9744.6904 8310.0309 2982.04 3209.0216 10670.2469 3074.851 14674.7058 6182.487 7900.4152 4259.5119 4546.8419 5746.2116 4115.8164 9658.8657 329849061 amyA Carbon Cycling Carbon degradation Starch Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 18011.0981 50674.494 3774.2975 6911.9292 16154.8267 14913.5697 59982.0751 10124.4054 4793.7614 6547.6329 6547.6329 6682.065 4071.2368 6065.1767 4742.6825 9415.2379 4359.0099 9009.8528 8410.1721 6067.5521 2841.549 5025.4089 28018.4225 2118.371 9673.2997 336030298 PRK Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 18907.4764 4402.7881 7567.1051 367728.1986 2688.4214 5181.3285 18105.0931 3182.2358 78548.833 5050.8841 4923.8715 4365.5845 3095.072 3095.072 10654.5217 8681.89 7827.2342 12388.1108 31803.8823 4661.5474 7356.7662 3611.132 7266.9837 11764.3877 11560.8204 42964.4931 4192.3341 4775.4589 34177.931 4806.2026 8857.5554 213156817 urec Nitrogen Ammonification NA Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 8886.1144 20313.4212 29196.5401 17882.0799 8744.2246 9881.9984 9209.7886 8770.1748 6924.3453 4622.6015 250386.9906 10338.6378 18446.6302 22003.4824 14109.0494 14109.0494 5317.5508 28952.0427 20364.8164 9624.8806 14100.3674 10539.0942 7979.4376 7439.0527 20049.1091 4038.7788 22319.0215 6376.9838 16336.5276 5995.6962 9217 8557.144 5668.4193 17274.4808 398315872 poba Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 7606.231 4141.9468 3436.4375 5236.227 2998.379 90287.4576 6078.9482 5904.5956 4184.4353 4184.4353 3058.1511 14175.4958 4198.4327 4530.4772 9095.9389 5060.1079 3865.3 4311.0059 5489.1402 4730.5133 13173.9262 3838.5459 7379.5589 11735.7909 4896.6059 4171.8759 61435.1062 6290.0603 85687921 linc Organic Remediation Pesticides related compound NA Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 3737.099 4207.6473 112163.6185 3638.0958 3286.8917 3224.966 4638.3038 2747.2613 98227.5995 5466.0275 4145.9279 5372.3886 3065.7337 3065.7337 3390.4615 7994.8526 5255.6333 10687.9688 4718.8332 5107.7649 10360.2226 7828.7515 9685.4534 6209.3869 15122.5008 4978.3325 5074.8982 5757.0067 2449.2975 150036128 SoxB Sulfur Sulfur Oxidation NA Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 22083.2113 13949.8389 17450.6362 10490.0237 20694.2325 6257.4663 14705.6392 14477.0834 9561.1962 15065.2274 16282.0277 9571.8545 340034.0698 19265.9674 15304.8919 14428.6114 8049.3904 8049.3904 12008.5315 21422.8966 15760.0192 20800.0995 19425.8954 19994.2097 8738.6127 8480.1816 18244.1893 6805.2521 26938.2447 9001.9607 17810.7784 9392.6586 11416.5468 12960.7561 7901.7597 22372.6507 190401659 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 9418.6789 4492.699 24691.7284 19251.8478 5145.9132 9063.3735 18242.3516 18143.0238 188502.031 5228.9066 24184.4896 27358.5734 5602.6111 5602.6111 20959.6151 30338.2582 15766.1603 10163.1613 89320.6086 34321.0072 5317.4104 10514.2085 18338.2244 16597.9863 39737.4009 46909.2351 27567.0261 47161.9171 11282.2301 11926.5996 7625.9891 17811.2027 225047514 chitinase Carbon Cycling Carbon degradation Chitin Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 36729.5724 12870.2722 23096.0191 17008.3795 16597.5315 8431.7421 53105.0189 33769.4349 141804.8282 56270.3207 75509.4169 44386.8637 542892.3872 162939.3661 33748.9224 93825.6652 36176.8653 36176.8653 24867.844 80097.5243 34082.7191 48191.9653 56207.2447 34287.2251 48454.2894 40875.4181 38023.9906 49569.9908 129996.5321 63748.7115 50334.2688 31238.384 48844.6317 54473.1316 55838.3614 60893.618 223954132 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 35421.1565 21034.3385 20646.8417 40338.6694 37810.6905 7503.4664 33948.7795 30854.864 24184.7051 40271.5259 31642.7106 21932.5739 698002.0939 46983.6683 41555.5941 43109.119 29713.6746 29713.6746 22236.1411 46093.5729 33322.3584 32968.6875 49666.1306 47970.0723 18407.4286 49172.1168 42140.3514 20319.8565 56780.5287 35793.848 41624.4392 19129.7491 109781.4051 23533.2061 16463.6803 67616.6192 218220999 ppx Phosphorus Polyphosphate degradation NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 71496.1827 32162.7045 7266.0242 17521.4271 10844.2318 6744.1716 11454.4414 16073.4439 12493.325 15861.8001 167534.7168 18399.3813 15004.7172 11872.4441 40251.249 40251.249 9664.1887 39764.1264 20927.645 26253.9619 21245.1296 55831.5364 28452.7389 13902.8765 18108.6553 14954.296 30183.6853 12168.5154 19943.3198 19264.3303 24040.0903 24527.9102 12209.2767 14839.657 29125956 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 39926.5069 6099.07895 31193.32745 28967.84585 10574.2829 2216.5042 2829.9469 2725.5521 77784.1718 23793.21555 4232.79675 4793.7562 4793.7562 5936.8045 4966.47525 4859.93985 3918.5227 4658.7229 5747.6261 2627.53835 5530.46545 5546.22865 2777.4353 2935.33005 10861.21005 2465.78685 5217.94955 358004266 tfda Organic Remediation Aromatics Chlorinated aromatics Agrobacterium tumefaciens 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5736.233 4263.8173 3758.2859 3263.7858 6585.7229 2384.1166 123358.3138 7535.0448 2771.5333 2771.5333 4288.5898 9735.8365 5485.6531 5431.4911 8524.7327 3316.5894 8511.4807 2801.1927 13471.3005 6153.2649 8031.2012 2649.6431 3859.4227 3737.4908 9540.0291 69153892 rubisco Carbon Cycling Carbon fixation Calvin cycle Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 30460.6884 9278.6088 11967.6224 34555.4382 7491.5319 7336.5541 8386.1841 10650.3368 9751.6716 94133.4143 9927.6635 5493.8826 16390.5529 12857.9027 12857.9027 7719.5188 13422.4992 9444.9951 15936.1803 15154.1796 11066.3946 8343.9151 7600.3456 13402.3342 6965.8761 26203.176 10356.9291 12994.6207 11972.6339 7516.2323 14781.7149 12294.9658 12705.4849 313892799 terc Metal Homeostasis Tellurium Detoxification Veillonella sp. oral taxon 158 str. F0412 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 158; 5570.1285 4160.0658 2863.4279 3748.6752 2506.6842 4720.4735 5249.7417 2622.2407 2441.378 5294.2063 4631.724 3337.0495 9443.1176 6711.9571 4198.6681 6577.7965 2765.8556 2700.3639 6983.3011 3153.549 10508.9495 7112.6377 9113.0412 2630.3658 4238.442 5325.8591 2872.8743 7387.712 256391712 cellobiase Carbon Cycling Carbon degradation Cellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 32715.3767 13529.1713 22572.5215 9529.7007 17718.9483 18117.4891 72770.096 17694.2021 20469.3947 85623.409 716099.5886 19385.0438 22170.1123 42397.1349 16584.9163 16584.9163 17671.2236 22103.9216 14333.6086 47738.1374 46598.3165 50753.5056 9672.3374 21012.7491 29379.389 13561.39 60863.1729 16827.3065 92616.9158 10846.3448 28175.2698 25227.2925 19676.096 26228.4326 110825038 chne Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 7751.2836 33617.6381 4274.4345 3684.5774 5600.6366 5565.5187 4449.9045 65349.5519 6306.2219 60456.7049 9568.9416 4795.4098 4795.4098 15755.6571 18714.9528 6884.8531 5413.5621 9936.4724 11326.4831 2883.2919 7153.8691 9553.5413 10154.5622 21710.8628 11132.5413 8589.0311 7848.9502 5844.1603 7812.1876 5468.1775 9604.2288 177839347 mer Metal Homeostasis Mercury Detoxification Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 257635.7071 30100.4761 93112.5448 106450.7855 178370.994 1032663.6951 55967.4194 225481.3057 90105.8964 101902.6382 268155.3282 166602.544 4288972.7795 106181.7015 96471.9988 155537.685 214279.6544 214279.6544 130155.7984 166511.7691 130075.2693 82401.1277 264283.1034 95741.9724 81275.0392 151554.0638 139224.6836 137997.5187 220207.052 152643.9541 133579.7284 109369.6301 89543.5654 183914.2696 86198.0009 183188.0645 82702286 arsc Metal Homeostasis Arsenic Detoxification Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 10993.2329 9001.7154 5342.304 4987.2593 6273.4116 2835.4583 195780.4745 7154.6395 4140.2754 6364.4884 8303.451 3571.9022 10025.2421 5057.4778 3413.2415 4831.6036 14320.0465 4979.5487 3288.1123 4252.5969 3747.8204 7791.1453 148258806 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 26703.3638 7608.3965 4808.2558 13755.0303 5218.9637 5692.352 34617.3835 70094.0709 36930.0611 19670.759 77225.9419 1414264.2946 103188.5485 26091.7541 40485.7785 20294.0825 20294.0825 35084.4498 22824.1808 45053.7277 40096.5282 54522.7971 34420.0723 142428.3252 34390.0183 52833.3576 26592.1427 70427.7309 18031.1471 39198.0014 43779.6365 23908.2692 23958.6125 26230.689 50505.1325 90336806 pgk Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 15186.5886 7864.3503 8451.336 4863.6484 8235.2289 6413.2391 13115.3268 7833.6497 5329.6038 167751.973 10449.3145 7208.7751 5079.8976 5692.5531 5692.5531 6283.2073 12816.1933 8751.7199 6525.2765 53085.9011 8625.7517 5285.0516 6048.197 11221.778 10379.5016 30350.4743 6238.5336 13719.8725 4695.1397 7913.2649 17365.964 8845.324 11231.9318 209401742 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 177586.5299 32271.0191 47961.5369 51710.1867 76543.3758 33243.3116 57058.8351 75543.6741 80646.7912 32052.9178 80638.4634 106779.7365 1056830.6341 84130.6314 89207.294 204924.6923 60637.7723 60637.7723 30883.9561 102750.1898 42474.4963 769173.2234 112879.7812 304401.4757 54933.4384 45452.1739 132225.9362 68053.0519 143426.7152 103890.4774 165501.7273 41974.7287 68443.7766 160013.6296 58508.1154 129763.1655 121607657 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 5291.9963 407307480 dehh109 Organic Remediation Chlorinated solvents NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 6064.0597 4302.9404 3549.462 3634.782 7035.9572 7575.1846 5794.7185 143605.5104 8836.9963 8322.9545 30942.2552 30942.2552 5354.495 13181.6477 6731.0605 8704.9378 11409.3269 7707.7968 4657.7646 17630.1948 10114.9628 2813.0804 15830.9955 8342.7036 83576.2162 6734.3201 8459.0727 4435.2382 4903.1075 10410.0634 154183479 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18021.6572 144199.8021 6917.7533 4372.0616 3887.6017 7061.3291 2582.3339 3337.736 5351.6923 5331.9398 96832.381 9044.1643 6166.4875 12582.1142 5490.7047 5490.7047 3162.6278 8651.0123 4748.9456 9305.0067 7863.591 10870.258 3101.6606 3544.0383 12454.4872 5002.2207 11268.1199 5236.6957 7777.0711 3124.6514 7838.0322 8051.613 38582.1511 11942.198 118472241 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4845.687 15114.1482 10729.3658 34591.8932 2872.0448 3500.5091 2970.2104 7660.5136 12345.4304 3963.8246 79095.5255 4790.2028 44462.2594 6503.822 4999.1543 4999.1543 18433.054 6428.1873 4518.0077 13268.2612 7732.5669 4325.8228 20249.7302 7009.6389 7056.9743 5576.5341 7540.209 4901.7043 3806.2757 4522.6702 16340.5476 6563.069 10077.307 169616334 cutinase Carbon Cycling Carbon degradation Cutin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 12770.54035 9646.3833 16040.9485 32795.56445 12859.175 16535.9214 12422.9756 16707.9191 7858.9965 14885.8205 9096.1682 9096.1682 10264.7243 17971.6008 18183.13435 10325.2663 5819.51145 30095.2903 17593.7637 13453.8495 71383766 narb Nitrogen Assimilatory N reduction NA Tolypothrix sp. PCC 7101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Microchaetaceae;genus:Tolypothrix; 22888.8479 11714.6112 8412.8682 15766.5523 17720.3663 11673.2842 7632.2208 18944.0817 95494.1482 46231.6294 475458.2556 22698.789 20337.6939 12809.0552 17571.7603 17571.7603 6440.1231 30879.9482 11899.491 10511.8824 64270.0093 722963.5923 6677.9075 11778.1437 20328.597 28473.686 56870.4413 19132.0004 18066.1077 7214.3801 8695.9581 9336.0008 11219.8756 24086.0489 317124239 catechol_b Organic Remediation Aromatics Other aromatics Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 4526.1653 1777.1098 2228.1709 3427.4487 3804.5661 82967.0312 6306.2221 7613.1727 4585.6413 3925.4457 3576.8123 4824.504 12269.1672 8240.7498 2419.2597 3324.4459 11344.1916 3031.8465 4369.4613 145217571 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 75337.9741 13793.0834 10894.3233 5424.6759 5459.3054 11237.0859 4134.4251 60964.7406 19085.6746 124908.7814 99898.2635 20031.2781 11506.2196 9293.1045 9293.1045 3262.167 11372.6847 10612.5906 21622.6848 11362.5798 31431.9132 4657.9135 8754.0554 3997.6529 2450.5585 7414.0737 5254.0495 1795.0828 11415.0659 7345.681 3295.8933 6490.3353 404496386 bbs Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 72423.8552 14354.8232 19780.3144 17708.2637 7975.4106 6645.1571 16775.4096 12331.639 8863.8369 8922.0113 9146.7732 113084.5203 12992.2512 12728.9224 5939.116 3351.1352 3351.1352 10380.4831 29785.8566 9266.2181 93120.7377 117041.3753 12754.6663 24639.3004 10318.167 13320.083 3608.2333 20865.0047 9901.9774 12576.1358 5061.3918 5744.8636 9822.6227 4019.2703 14983.7281 94471147 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13694.8999 6686.9955 5352.726 3848.4964 7391.296 3413.4437 11978.3445 6222.1738 4683.4169 4683.4169 10748.8313 4718.1412 4685.6227 5757.8998 4871.4113 5980.2534 3892.6205 6153.8019 6895.1008 76193.4587 41299.6162 5088.5139 3971.6985 12905.3318 4827.8058 2916.8592 8049.4725 302698715 lactase_fungi Carbon Cycling Carbon degradation Lactose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 6476.6663 6106.0461 3089.9144 4811.6851 3240.4284 5271.3146 14350.1246 3336.9526 112110.2052 7127.102 6097.0993 2141.0407 2141.0407 5631.6944 11020.6774 6273.0239 4851.2361 9910.6756 8453.1581 4312.5862 4448.4651 8535.3819 3709.0703 20150.9541 9056.3832 10153.8992 5028.8413 6121.1969 5821.4067 4494.4598 16665.3782 212702496 atza Organic Remediation Herbicides related compound NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 10061.6806 8886.2872 2953.0547 8285.5065 5472.9675 5988.1592 10478.2795 5137.7654 239185.488 7973.7241 7727.5915 12377.9463 7283.3904 7283.3904 5243.0634 15065.441 12309.2943 4644.5018 16570.44 8071.977 4348.0065 5546.0082 16207.9404 7290.5649 31801.5819 7252.9943 32187.6798 6966.9813 8914.1224 8980.8731 3452.1581 6231.3593 320549039 glucoamylase Carbon Cycling Carbon degradation Starch Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 100406.9607 44116.8608 40408.6087 34007.4755 18733.7949 33170.3069 52221.5669 20783.3393 40195.5062 53223.2906 56732.6665 777533.5229 32309.9402 37384.2957 46866.6033 25068.8918 25068.8918 25510.4259 61234.0855 44646.8833 33091.411 70477.1996 58408.8033 25302.7398 17165.8071 41926.3845 29135.6157 75074.8462 38547.5573 44704.5865 24135.7205 43351.4907 33799.749 51650.0293 42974.854 27372237 endochitinase Carbon Cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 6185.45465 273296.19105 7734.5363 15630.9877 2086.2299 7482.46045 13860.59515 9493.4569 4951.6268 3264.1551 87251.0771 8189.0388 112463327 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27489.6845 15062.8931 8153.4851 14677.4501 38337.5913 132590.7818 9101.4129 19896.0463 13708.0172 228573.0971 11500.5495 15368.6398 34970.5163 11553.1329 11553.1329 12719.0428 42886.8296 17058.3361 14376.2119 12263.3733 17623.6066 11153.2851 57912.759 16988.9458 9005.5252 30298.4138 97742.3334 25410.8579 8530.7906 15560.1176 20456.7288 10488.4735 25419.5707 254473595 soxY Sulfur Sulfur Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 37328.9211 16855.9328 12686.8506 22322.1594 19858.9473 8270.8848 18468.6089 9417.0595 13692.2693 20577.1632 17010.5018 565163.0428 21391.9911 19326.2011 14893.7121 14973.4313 14973.4313 8796.7602 47298.5127 16301.6985 33258.1209 43554.7142 34540.9976 23507.2119 11203.5078 18333.1856 13964.6739 51462.9975 20802.0594 24949.8229 11296.8432 21490.7259 17016.0489 13448.8693 23696.2996 211957059 rd Organic Remediation Chlorinated solvents NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 14128.0405 16177.1739 30459.2721 12964.2019 29974.5183 5085.1507 8461.1845 9138.6193 4588.8072 20445.1325 13592.5655 12074.731 254633.5117 27270.1548 15769.5917 12749.4065 6993.0309 6993.0309 15812.0215 20035.8157 15412.7111 19343.3121 19084.5252 18516.6513 7227.4987 7530.9085 19160.3706 9527.6237 33797.3645 20972.8632 20725.0523 11838.3363 9733.9734 12711.0925 9123.2753 26318.9998 37726804 dsra Sulfur sulfite reduction NA uncultured prokaryote 6791.6424 2252.2001 3872.0375 70742.2131 3983.4964 8780.1152 6826.3042 6826.3042 3331.6638 10900.0227 5457.79 3432.5018 5103.5719 8977.6573 2621.2516 10715.1059 1851.6897 2677.7065 4715.4342 3809.427 374096645 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 84267.1294 5787.7201 7853.9337 11768.2963 3356.049 14949.5724 6534.393 10708.8771 5069.9354 175904.5561 7679.0687 5121.5536 4359.3868 5881.9528 5881.9528 5224.1729 15905.4043 8822.2666 9723.8483 8920.6045 9299.4451 4642.4431 5382.9551 13330.3896 16986.1074 18787.4786 15230.231 13190.406 5126.5194 6425.5217 7380.3897 5532.3257 13271.2011 35212663 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 76723.7708 93291.1386 65079.7131 62209.3576 51220.9774 32401.003 56342.5 97062.6389 56546.1626 123555.7378 68232.997 45287.7928 1484102.1743 68768.2533 91823.9001 182438.2586 46494.1238 46494.1238 39872.196 84564.3282 58276.8425 54671.5466 71643.7902 128513.3761 32651.0394 33567.1219 61174.2541 64820.0587 119254.8384 54088.108 73366.5438 28406.074 32383.3716 47926.793 34726.9017 72276.2434 374655179 pcag Organic Remediation Aromatics Other aromatics Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 5459.2887 9214.7163 3671.5181 2549.4233 3109.2136 46745.1124 28899.9592 3822.8857 228403.131 42984.7654 16905.9859 7909.2852 20955.0191 20955.0191 32100.884 12897.035 5616.3099 247922.4862 21024.2796 22506.1228 5646.9043 4793.9248 8304.0227 3816.9068 10866.2885 17581.1313 5761.7972 5025.3034 13270.7992 5593.3658 80682.6529 13624.4969 210074348 pme_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 4971.6721 3543.9136 5679.4496 2743.7492 5002.0447 7520.4277 3973.4877 118969.6627 5965.094 7615.4979 6407.2122 4117.2733 4117.2733 2845.0247 10670.5358 5384.2607 4828.5109 8222.7438 5247.1131 4401.9668 5393.5872 6836.653 4222.0701 12750.0817 6469.3208 6930.1005 3595.0924 14784.7425 5910.3709 4043.1288 7429.3317 379254402 chitinase Carbon Cycling Carbon degradation Chitin Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 4912.2509 17473.9958 1287784.0796 8004.4719 15567.1413 5493.2511 6959.8701 9454.6058 4295.7194 6215.4691 6522.0179 9311.0145 276000.9008 9774.8472 9523.8787 38957.8224 6481.1954 6481.1954 4787.0723 20338.4248 15309.3864 19976.1976 22250.7306 19611.3883 30670.8566 8848.9832 17792.4444 6546.6461 24495.6134 10647.034 18884.5959 5849.1774 10829.2223 10796.6211 6294.1727 5154.6379 169602227 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 5005.0152 3883.466 3651.6454 4572.4402 28497.277 111676.1582 4250.1798 4948.7498 3505.5847 11243.3971 5419.5 7352.0166 228635.6677 6399.8891 2543.7159 3234.5575 7967.4995 2354.9007 11354.0907 6705.8251 9610.2256 2437.0148 3024.5322 6659.6568 3070.8752 7474.6772 282950650 urec Nitrogen Ammonification NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 27391.1701 15188.0508 10480.8798 20353.5615 40465.1197 17806.9331 29586.4723 14885.0466 32593.2463 15845.4144 314019.4359 26313.3946 37042.291 32091.0089 32853.1211 32853.1211 10642.1974 44739.382 20677.9715 27004.9938 26270.8624 14381.6088 32537.9073 44789.8611 34065.4894 14434.4144 45062.883 22093.224 87250.3028 12937.9643 21853.4974 15729.0214 13233.0276 24502.9644 357975494 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 24041.7043 16869.5965 21209.6796 28641.7142 19755.9521 6284.3995 18784.0428 24951.8193 15172.7804 17969.4795 21584.8029 20057.8643 530154.5221 22701.1609 23393.1411 15862.4123 12516.326 12516.326 15499.7839 32064.316 18701.1945 22683.4734 24889.3709 24872.9721 12769.5859 19073.5027 27611.479 17318.7006 144201.6518 29282.4142 26981.4102 14582.5578 15606.1564 19599.6191 13237.2575 29837.6233 258404394 tehb Metal Homeostasis Tellurium Detoxification Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 5756.2562 1052767.0368 65051.694 17555.2723 2664.1918 4303.0474 3117.7762 7152.2946 90253.6677 5564.5021 11238.5564 6903.5097 3968.7575 3968.7575 25456.7885 4871.9505 8573.319 5075.0675 2670.2259 12314.7519 3570.3943 10116.0918 5410.557 6503.8184 3351.975 3037.0112 4037.5118 2104.4466 258619013 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21956.9347 7370.3069 9425.5689 2662.1771 4867.8047 10308.318 3576.2378 219339.9565 4913.8523 5273.0645 3094.8845 3094.8845 2967.1109 10815.9273 4873.2955 7825.6753 12346.1708 11085.7327 8039.2397 4231.012 6600.4035 3441.7705 9314.6882 4958.8978 8452.9151 2920.8146 4173.5268 4923.5376 3373.0336 9627.8722 32307981 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 48255.9208 807410.223 297110.8836 46244.5044 21209.4224 30712.1528 35151.996 135358.7847 35801.6598 45233.6027 84148.0993 30648.4128 1759614.9537 58168.9732 41915.336 51872.915 57520.6485 57520.6485 28166.3877 73450.2848 32639.6001 54421.8128 89118.5972 82057.9373 27906.4741 29597.0768 70570.6586 39284.7502 139684.8413 60272.7063 77075.8834 28615.6833 47948.8349 41924.2246 54345.8118 75153.4227 169157603 ppk Phosphorus Polyphosphate synthesis NA Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 8721.2319 4629.2635 5021.5871 3505.0646 5015.7695 2875.4734 6318.2442 10200.5983 7743.348 109700.1216 11496.1269 10225.2717 23681.2452 15915.3265 15915.3265 4433.5062 20931.9945 8052.1746 14739.4015 12663.965 7801.6966 4538.9997 5133.0952 8303.6943 7443.3913 25167.5389 24384.5182 9454.198 4312.3307 12907.1907 31371.3113 4424.2918 6801.0649 344315623 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8128.8248 7306.0209 11909.5464 6529.9989 33452.4995 5946.9119 2858.5187 6450.9493 19551.2112 12036.8147 142035.7447 14181.9463 12165.1221 10721.4472 7765.1106 7765.1106 6725.9891 20422.2844 6398.7678 13891.8246 10458.7299 13420.116 7167.7292 8474.412 15805.213 6529.5529 16069.0592 12509.9459 10262.6103 4352.7216 12213.1643 12905.7293 6886.6212 13020.3201 146282380 arylest Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 53983.0177 15080.8273 6235.6151 4626.3451 3025.2693 5441.1681 14011.282 3958.2517 7421.9025 6784.9006 4437.9066 6090.0681 6090.0681 6846.2976 185406.1453 6248.8767 14992.8592 4229.1539 6549.3745 3246.8277 19570.8206 5468.6733 15772.3744 11271.2216 3575.7032 6056.7038 14326.9869 6154.1885 9179.2508 3294.6486 6097.3777 292821826 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus F0309 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 23835.7597 15940.1848 8193.8278 16282.6769 14422.4532 79102.5709 20547.7414 33943.0755 13883.2066 283145.8002 24061.7879 399748.6257 23407.2753 27039.3657 27179.6973 13570.19 13570.19 20528.4102 49262.1029 36316.1486 35112.4864 42344.0807 38100.2891 22074.0324 21778.7914 29311.1001 169284.5792 243561.2511 39293.7001 373934.5976 108159.9105 58844.7408 21471.8615 15999.9145 73315.1714 332377316 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 378734.6988 214061.9671 34190.2099 40360.0736 48432.8841 14602.6783 19124.1097 24305.9133 22159.9096 25148.3408 19847.5882 430745.863 28063.5403 44679.0367 45676.7838 18175.6359 18175.6359 13390.0041 106389.5964 30678.0575 17651.1684 67412.6884 36217.9299 9895.2509 25848.2387 38775.6368 22364.1453 50362.7185 58629.9364 46827.4599 32167.4677 33584.7561 29399.3261 17435.5918 18513.6706 14023474 chna Organic Remediation Other Hydrocarbons NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 5801.60495 7042.5599 2460.895 12680.1718 2377.7013 3946.9712 12585.8649 5056.5292 6911.9707 3841.00315 5405.8397 11883.8413 3489.265 7363.4238 4430.5148 3848.6869 4870.8541 4594.2679 19630.654 11966.1522 7149.8571 3644.7655 4964.9217 5027.1112 7298.7804 320012741 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 24116.9997 34104.6506 29132.129 87537.3528 37583.2238 17972.4654 21853.78 10127.7434 17656.8474 19376.2037 14561.1602 566558.2658 31147.7323 40256.9784 157433.9073 21072.2869 21072.2869 12605.58 34069.4073 25726.0922 29477.1971 24680.3611 23628.3377 77129.8699 15750.1235 46477.5684 16105.0374 59261.4838 43802.893 38110.8952 14425.5541 23478.5117 15227.4346 21106.0998 219961.6858 371935470 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dialister succinatiphilus YIT 11850 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister succinatiphilus; 8775.0049 9927.1548 41251.4267 5419.3742 4203.7768 2240.6406 3006.9365 5264.9063 12372.233 5970.2419 126739.0285 6179.0176 14296.3764 8277.976 8277.976 5140.9836 12564.3088 9917.6983 16700.4966 13965.5118 12759.7611 8770.791 14960.0733 12199.2083 40630.6384 21663.3581 10342.2323 17205.0668 4768.5431 10908.6174 11401.1488 4235.6678 18068.1243 156971824 phytase Phosphorus Phytic acid hydrolysis NA Yersinia rohdei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 3988.9967 19654.1 4499.1384 4880.3924 2182.8496 2536.8248 4989.7366 4604.5454 81558.7408 3996.2362 4142.0543 2080.0088 2080.0088 3675.6227 9283.4105 4306.6772 6969.355 6794.2424 5417.0844 2911.078 2805.772 5265.8569 2575.4582 10614.6875 5759.5306 3216.0243 3401.6157 4014.7639 2926.1823 5450.2166 388537519 urec Nitrogen Ammonification NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 21549.0541 10357.9612 8761.198 18966.9127 8576.6581 15869.6146 8109.3757 4322.4788 9748.3774 10304.9987 27467.0784 1147914.7673 15437.0427 13495.1175 31641.6306 9002.2937 9002.2937 9258.2558 17711.6494 11114.2877 10903.9794 12500.1925 8319.0683 8415.5848 11694.3735 12420.8107 10796.2093 45261.2192 17098.302 16751.2486 6963.2778 9171.2594 10457.7451 7987.6589 11598.7044 251755387 nrfa Nitrogen Dissimilatory N reduction NA Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6209.8771 10465.8403 8212.0241 5206.1351 6616.2935 2250.5882 5619.8161 5702.3632 5206.2773 119190.49 8091.9842 9385.6775 2271.4952 2271.4952 4770.7637 10329.9321 10019.7146 10776.6851 8147.8254 10265.3854 3496.2363 4213.3322 12793.4133 7940.9698 17957.3541 7901.7087 13941.4967 3940.0855 5231.3868 5514.7845 2897.6959 12144.6376 109452564 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10408.3851 6590.1646 23930.8238 40608.021 6191.9804 14536.9852 8578.0298 18201.5027 47206.2836 134415.2279 6340.8644 10685.9189 9981.5316 7771.4301 7771.4301 5431.1433 22599.8904 13569.3526 10783.3253 83785.5724 8203.5909 7306.6785 10679.7605 11867.9206 13287.7792 25298.1901 18332.2516 14199.1396 7191.7184 11912.1311 38762.5546 9685.5432 19310.183 154247448 FBPase Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 72942.3018 13146.7234 16573.5628 12125.3902 2962.0772 7124.2391 4431.4877 2869.6461 2869.6461 5532.1731 6377.3708 7088.5479 30043.031 9819.7878 6959.6516 2817.2074 3380.8093 4542.175 2077.9338 109452441 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16820.2286 11371.6377 10576.9687 16492.9394 6335.1157 10837.9645 12493.2726 9602.3775 12985.6217 16791.0053 8549.0414 259394.5201 17799.9685 17133.3783 11224.0046 10780.6762 10780.6762 10452.8031 28477.2407 15192.2924 23670.4593 30939.9613 18720.6565 10394.1021 9149.9555 17335.441 8802.7087 42957.7439 16272.7055 24473.2572 117058.5731 11879.1068 33434.7886 8364.6254 22951.3496 334141052 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 13588.9148 38605.2822 12368.2957 10786.9901 7139.5682 7050.7071 5460.2691 10626.2757 18794.8138 7515.5068 263146.6964 12465.6677 11830.942 14528.0635 10145.2173 10145.2173 16792.2169 18924.6421 12324.2187 14335.9722 19830.4983 8607.9737 6135.2031 6044.8055 18099.5019 6206.9026 29046.0311 17295.7298 19765.0138 5365.4129 17514.1036 11687.2272 9539.4417 12903.2601 284046285 chnb Organic Remediation Other Hydrocarbons NA Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 22542.915 9184.4796 44158.4798 18742.3037 8531.4807 125659.9945 10508.4495 4985.7901 16454.5961 26816.5052 37818.4117 246460.7292 17827.0243 15750.0212 20243.1949 18292.3309 18292.3309 10856.0216 29201.4231 15650.8481 19555.5858 42839.301 86176.939 10351.4544 25889.4983 24882.3402 12426.3729 39331.5703 23736.4815 98577.0979 9354.8676 16418.0206 84004.5784 11217.1277 51332.3123 83773727 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 313577.2473 14748.6982 145168.5123 314456.5291 137709.2253 141746.0683 358213.6055 346019.9717 724137.7837 311985.2688 302940.8563 334503.6049 3056580.3752 694618.0354 431865.6169 1383001.4484 285357.4791 285357.4791 172191.6639 323605.6866 186987.553 535504.7681 339136.7677 294247.6562 237336.3248 226626.6589 174156.6226 182539.3242 404459.48 278366.4969 386991.2264 226589.8815 180566.1235 196078.0779 193901.1294 681956.3418 320334408 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 9670.435 8645.8544 9586.3619 5438.3165 4929.2138 5494.5897 3004.03 5397.1782 8025.3462 2733.3588 189263.2184 10215.7888 8267.0573 16311.3821 4794.916 4794.916 7676.5944 10901.6606 7849.1751 4927.4361 9733.3515 10743.0674 5068.92 4250.7319 12433.4658 5607.5552 18576.5021 7056.9524 11892.594 3555.9662 5693.9019 6187.8012 5208.8668 8337.6289 297549360 linb Organic Remediation Pesticides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 21444.9184 19956.276 10135.78 35369.6987 8894.5801 11914.7476 52167.0996 20086.7247 24806.4383 31923.3258 16365.6293 342800.5987 25083.3381 27394.7595 19222.0016 27040.8914 27040.8914 11540.1884 46271.4247 37224.5933 23108.6387 64406.2798 39914.147 17655.8724 20983.2045 20514.3018 16445.5477 83184.7728 30515.6934 65756.7923 15278.6738 42907.1041 44530.2721 15549.5112 27961.6117 196243766 arsc Metal Homeostasis Arsenic Detoxification Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 20095.5779 7507.2764 15128.6912 26963.5955 16083.1551 8232.9469 18624.0651 15206.6956 8573.4682 15132.549 9113.6076 249925.0901 17516.5008 14426.4558 26241.022 14934.772 14934.772 8882.4853 27375.889 26471.7934 12625.9078 25367.593 52916.0862 7798.789 25424.4526 21446.8261 9591.6126 29172.5987 40785.8501 23234.8227 9689.21 15554.016 17900.5833 5313.6888 13563.3004 359836309 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 43526.994 20755.1421 25414.093 8979.9174 5784.0178 10313.8287 20377.0153 12234.7114 29852.4741 15588.7056 139982.0987 19987.6257 25062.1493 17817.8249 14903.5288 14903.5288 13453.3178 48842.2093 13809.45 28036.5538 21115.6818 23668.1357 11022.292 16925.513 21479.3569 12157.563 51372.6196 23509.4152 26212.5996 11176.152 15405.4698 19841.6448 11044.2131 28817.5442 88702959 narb Nitrogen Assimilatory N reduction NA Mastigocladus laminosus superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Mastigocladus; 7691.0506 2822.1195 9697.5447 52208.5169 4259.5449 4259.5449 5500.053 24288.2543 84690227 ppx Phosphorus Polyphosphate degradation NA Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 4195.3282 49396.2047 7669.6929 3225.4854 17813.644 2255.622 56260.3221 5075.8993 6609.8143 6609.8143 9080.9902 6377.1678 3864.3704 11640.0092 20288.3291 7571.6036 4885.4572 2585.3758 2918.096 4703.9789 15055.5183 159028642 mer Metal Homeostasis Mercury Detoxification Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 28175.1412 1035430.469 11049.0977 10133.8587 13218.8684 5335.8205 14835.2762 12836.6263 8193.4262 11043.6186 37846.8228 23591.5754 251694.7988 79837.312 25853.584 22877.0096 10981.963 10981.963 12575.2199 21115.6501 18410.2415 50880.7745 15124.8137 19247.1389 25232.9199 23571.2159 18693.7973 16016.0265 128126.5825 28391.3736 22958.1031 5591.4589 39310.2962 12180.0199 11704.5832 75469.6927 154341937 GAPDH_Euglenozoa Other Phylogenetic NA Leishmania braziliensis MHOM/BR/75/M2904 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 52809.7392 9937.529 14819.3509 6843.8683 24811.5791 24362.2035 18565.6283 38120.0072 43280.5318 13989.0291 303916.7227 17270.0968 23588.273 13157.9693 15000.187 15000.187 10682.7073 33043.8988 15228.1814 26234.2247 26189.0881 53213.4147 17057.2817 14602.9849 111014.1968 16503.0756 123803.1804 19294.3298 39301.4464 9621.5632 32295.6287 18608.8718 20203.2021 17606.9759 14289338 one_ring_12diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. 19070 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 79282.8445 31943.524 222691.7234 109650.2949 55732.4416 42995.7354 29749.3945 45191.3429 18869.4805 44022.833 71635.1536 53195.5966 1085882.3441 81412.2854 102571.1392 64796.3735 61834.6692 61834.6692 49867.0105 80308.0296 53516.0346 69601.9332 74415.2227 207722.5602 39489.5216 208932.3188 103277.3958 31401.2643 183767.4357 49550.2152 105088.4218 25686.8876 63734.5403 114634.2575 33745.6004 333110.6888 297253666 cysI Sulfur Other NA Geobacillus sp. C56-T3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5499.6274 12961.1317 3629.9432 16497.9592 4483.4246 4398.1533 21680.7163 21190.3829 109252.446 9845.5668 9079.1744 20755.6972 18514.3569 18514.3569 3398.5609 7318.3602 188777.2167 4274.0694 8759.7932 9367.929 8378.889 4892.0471 12874.1214 13356.6594 20065.7889 565888.4943 38227.6898 11256.1298 8950.0557 8273.5896 30815.9572 8346.7345 386331009 cellobiase Carbon Cycling Carbon degradation Cellulose Serratia sp. AS13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 61525.5538 31364.3 50902.924 393221.8083 159042.1813 12569.4951 133684.3777 44806.1181 43496.1762 41622.9984 120283.6188 94222.0168 768879.7668 80182.4857 52414.9914 48040.8497 36967.2762 36967.2762 32216.7685 82143.5088 35400.8371 57979.9625 88986.2828 70866.7525 29348.5915 34958.9566 57404.7855 47889.9288 165851.5458 50277.7095 179214.2747 25152.4223 43310.5714 34047.3716 30355.5998 98496.0496 59894160 hsp90_Stramenopiles Other Phylogenetic NA Pythium graminicola superkingdom:Eukaryota;order:Pythiales;family:Pythiaceae;genus:Pythium; 13153.529 99248.9397 9808.1172 18454.9491 2439.0461 6614.4697 5241.9848 13515.6572 8340.2899 7104.6234 85538.5203 8139.8553 8359.5966 7462.5296 3578.9329 3578.9329 11693.656 22215.8219 13489.1473 13274.5347 12665.0687 10588.7914 5232.8329 6524.7017 14037.9003 5251.6619 21052.3182 13838.5033 14065.5165 15570.2224 9202.6205 17280.1483 4730.9028 14920.3143 94471253 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22422.7039 24222.5267 14375.8773 32468.7752 6858.6362 8159.6763 19122.3673 11757.8097 17594.3793 34077.4668 11702.2686 581708.9952 25192.2555 19878.5219 27163.4456 19040.7127 19040.7127 10531.3368 34854.4855 27322.4088 26409.4633 42521.8305 22913.9388 17547.486 13231.1976 24451.0283 11298.9769 47688.0802 24675.9863 48485.5298 11165.3954 17545.683 18849.7188 12212.0512 27569.7155 338974001 PRI Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 9656.4927 13765.1962 14542.026 4190.7696 4920.6984 3027.1285 5480.7262 3423.9125 2922.505 260838648 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7731.0027 9638.152 8697.1399 6263.1278 5439.5751 4653.4546 6638.8452 5673.716 5841.1976 129365.9927 9241.0473 5991.5234 4469.1778 3381.8074 3381.8074 5827.413 12798.7676 11736.0743 16658.6942 7789.3814 8938.5633 4043.3097 4418.0662 10571.4928 3750.7433 17905.4619 9105.3862 9620.3338 4649.0745 5467.6689 5613.0369 5543.176 54285.8652 359822391 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5062.8103 4347.3401 3895.0554 11122.2551 13486.257 3698.206 6779.6327 2707.3632 3443.6559 4872.8834 4479.9673 129201.9408 5283.7665 8637.6432 10485.3602 9436.6242 9436.6242 3913.6054 37527.6467 5114.3745 5744.3848 6547.8739 4519.0157 2399.688 4464.01 10681.8767 4003.5235 12038.4459 10344.5364 26216.5836 8959.9543 6845.4979 6056.5845 5742.8406 7169.8295 347823940 nifh Nitrogen Nitrogen fixation NA uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 6726.6981 5860.1659 3551.2938 3294.8723 3956.3585 5991.7695 2878.0244 73618.1523 6237.2552 3822.9753 2944.0545 2944.0545 5191.7632 9182.2171 7148.9699 5764.4858 7464.1865 10022.3216 2907.6604 14415.9298 21338.1429 2963.0689 13824.7795 6309.3326 9846.5929 3651.2353 4613.9307 4491.32 3507.2395 6902.2345 288867726 pula Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 9531.2862 6640.5206 5448.966 13635.9765 6223.7104 15137.1494 6753.7631 2575.1318 15466.7222 6695.8684 253928.2806 25414.4892 17740.7174 33024.7749 14233.7961 31692.8084 79252.833 24997.5916 20507.5212 10470.9298 6242.7997 7384.7689 20584.4754 9990.7817 64162.326 18906.1916 18499.8332 9428.8554 10588.1029 12715.9212 8982.0763 18551.2087 311743137 linb Organic Remediation Pesticides related compound NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 24875.5953 9695.3949 28818.5349 28804.4765 67597.0222 41654.7984 10476.0176 9457.9427 13806.4241 20620.909 233423.6333 17499.1462 18269.2185 50397.0161 19763.1962 19763.1962 14575.2472 55627.73 21245.3877 195648.8575 22223.3948 61577.5416 12255.2891 17313.8933 40469.9706 39716.9081 39415.1482 24674.7351 115097.569 11134.9896 29242.6089 34154.9623 15281.8613 40016.1507 18447901 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5506.0855 5196.9632 3342.524 3853.8659 11381.9126 9412.0197 3432.6315 345014849 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 16133.1459 10663.3248 17061.0891 8574.6014 7191.6606 8906.1665 4647.9027 5908.373 290257.957 14123.2335 192173.4075 10869.9854 8413.4172 16076.2699 12106.1773 12106.1773 6026.3949 19386.2008 10737.1539 5985.8387 69634.0288 11728.3541 3813.6269 19698.3959 15352.0577 5918.2508 21439.0934 25715.5429 13619.9869 8825.1392 10926.3024 22030.8091 9373.5844 21648.8099 82618395 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4521.6018 8995.8584 9376.4222 3927.543 3879.246 5120.4083 2678.3676 2105.1875 18113.9048 4191.9608 7393.9892 1903.3889 3087.788 2305.7588 254000265 amyA Carbon Cycling Carbon degradation Starch Methylovorus glucosetrophus SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 27179.63 17227.4233 68241.9678 9845.9628 19202.7868 91251.9385 26186.8326 12054.3599 10556.3819 18485.6486 18181.4129 43922.2188 321596.2964 18466.6195 19830.4309 45277.7764 21839.7619 21839.7619 9015.7376 17810.0215 11568.9 7062.7974 19832.1755 7807.3356 6136.4067 17643.2821 14929.0159 13880.062 30120.0794 11849.5539 27384.3194 10561.4648 9363.3328 13780.736 8288.7222 30698.3975 299470011 actin_Stramenopiles Other Phylogenetic NA Ectocarpus siliculosus superkingdom:Eukaryota;phylum:Phaeophyceae;order:Ectocarpales;family:Ectocarpaceae;genus:Ectocarpus; 11771.1622 7198.8857 19835.0744 8401.6389 30414.0377 6147.9471 8488.846 10014.7966 19141.3244 443465.4403 9191.8547 8140.4453 47673.1639 16669.8229 16669.8229 8758.9192 30232.6864 17521.8492 10439.4912 24589.9838 12463.8321 7791.6306 8790.191 41057.9318 8565.5696 23527.1968 14798.8397 15669.5415 19094.0413 9648.0443 15445.4627 8218.7248 13899.5694 119860726 arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 5393.4257 518735.2156 126739238 atzb Organic Remediation Herbicides related compound NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 18279.3815 14494.0165 8462.0623 6428.0874 7939.8878 22218.3526 29235.1094 4796.9359 8133.5368 11236.5643 7356.6428 276198.4789 16977.1663 13522.954 8395.6368 11100.5108 11100.5108 8333.8042 34158.1601 10965.7934 14948.27 17178.6715 15437.2309 5723.2976 6037.3329 12700.4465 7939.6247 35227.3982 16451.6083 21286.8814 6290.6468 9450.6344 29340.6807 8831.5504 29855.544 297559906 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 329016.0718 313217.226 5456.9125 4251.4813 2422.75 3280.9004 9221.6943 68803.8025 3757.3238 2092.3208 2092.3208 4967.6745 7803.5781 4681.0209 6779.0601 3212.5706 11125.4055 27048.2241 6891.8938 5738.0346 6221.3977 2616.7342 4571.4284 57335580 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18940.0471 6672.7506 41160.9239 84686.6815 6954.8231 3952.2157 8959.5806 11142.8119 4300.3923 253119.2231 8999.5424 11623.0113 6955.7244 3159.6436 3159.6436 8732.2548 11388.055 6893.1052 11601.4796 12751.16 17818.1677 4731.1578 5696.1174 15906.5856 6239.697 18075.8102 13843.6812 14820.5252 9678.9662 5095.775 8484.3405 9365.7495 12895.9196 354580070 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 19056.1851 14938.1898 9180.9327 8152.7598 8347.5578 13073.8108 8381.3249 90652.2763 26065.1814 8736.184 274599.0757 20916.6623 28994.2828 77191.1463 17293.9486 17293.9486 12761.4027 31246.9738 22860.6943 13387.7732 19026.8907 18652.9674 13544.5778 14508.7821 18841.6636 13153.0286 42113.3731 12106.0821 23573.6706 11505.5545 38548.2007 32418.9479 17069.7264 29632.4056 119671014 amyA Carbon Cycling Carbon degradation Starch Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 13613.7249 11247.4727 9028.5598 9553.9143 7232.0629 14460.8605 13276.1393 13995.695 16309.2115 7999.7249 264543.7018 28891.5667 18390.7772 7891.399 20986.989 20986.989 7331.6516 22440.3623 12944.7445 16271.799 16542.4365 8722.0989 11603.481 10294.0239 12324.962 12073.3632 22030.3162 24145.4564 21480.1197 8701.2909 12701.5818 11207.1713 9735.3095 21884.8972 334102099 ppx Phosphorus Polyphosphate degradation NA Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 6874.9453 81227.1875 2507.8434 25307.7651 4537.121 3153.3138 3153.3138 8510.6636 5756.5573 1697.2579 62248.485 5344.9725 7371.95 1911243 narg Nitrogen Denitrification NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4385.2887 5943.8252 4657.5951 12071.8079 6759.6012 2991.9759 3247.7813 10118.4677 4071.6663 6777.4026 3717.4823 353187829 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 65041.0911 20376.6303 29936.5286 37375.3595 26828.6067 9747.5036 22165.361 68590.8431 46163.8555 31496.0827 34258.6518 21686.5609 818849.8433 42806.0106 101103.3392 74250.3814 55845.4138 55845.4138 47246.0937 61748.0103 98829.0631 26284.4732 53433.6613 476871.1844 31087.1184 27267.5135 37424.6948 23546.3684 70690.8995 39577.7209 41660.243 25838.8215 37929.2812 27477.0882 19243.0552 40276.2614 328529727 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 5084.0666 9382.8004 33571.0388 12572.6922 5515.1107 3990.238 5130.0946 7720.7575 190237.3885 11855.2701 11121.8397 32897.0618 12209.3451 12209.3451 4162.1199 12726.7094 9363.4252 7362.3078 4923.5028 2727.2796 5648.8682 19363.1146 3154.5806 19599.0206 37538.6996 15941.7548 7358.157 8706.8729 3764.5773 4916.9958 196478925 cysI Sulfur Other NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 208769.4778 53659.1504 161687.4329 354621.7797 287993.2205 72724.7841 289639.4757 73438.1311 21443.8368 118269.3832 88155.8605 90130.6028 1766199.5237 93498.2215 156542.3888 361503.9525 186462.6524 186462.6524 83242.7316 106474.2466 60632.2781 106077.3518 365379.2517 101365.2214 122510.1083 119660.1348 125607.0673 60568.1885 183440.8268 120372.1809 156902.7894 64679.3792 64179.8845 209398.6432 65161.071 97007.8933 378401757 PRK Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 18192.8084 14243.2049 18405.0923 5887.5405 13839.8797 16476.6934 10371.9128 205203.7644 12143.8747 429904.954 19418.2882 15279.14 38464.0454 27064.7732 27064.7732 8284.9306 25618.3991 20917.3518 25925.8488 30824.2143 20882.2676 15135.5308 15710.2047 22604.2112 12836.5369 49659.8006 21326.6995 26111.5799 12131.8449 14089.4764 21372.2863 12313.5317 30374.3183 302389367 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 63260.8755 5307.5175 4488.7924 5385.9021 4250.3596 4666.1895 6004.4269 6382.9113 62658.3184 21856.4081 14802.4111 6622.4327 3390.7481 3390.7481 28630.6739 19317.3663 6121.5015 48661.9949 8866.2526 7072.6391 6619.8697 4756.5283 8467.7295 10043.0368 43605.7818 15472.1237 7921.2798 2582.392 6421.0995 12773.0589 4536.6208 7537.0602 89087213 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9726.9381 22894.581 2912.4152 8551.5244 6309.7776 9932.1027 81573.8036 4633.8427 16254.002 4942.1829 5207.8613 5207.8613 10251.8923 5360.3457 4116.6012 10748.9445 20284.0368 15961.6215 7312.17 14821.7142 3222.6273 3116.2476 74791.7235 313117091 chitinase Carbon Cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 5372.5844 12000.2688 5386.4252 3051.1299 2886.7273 5944.0574 4726.4247 2501.8088 4606.6571 3873.0006 18490.1849 18490.1849 3193.7642 9486.728 5597.5059 5410.068 10052.8877 4148.1522 2447.6867 5348.9375 2788.0719 11031.5404 9614.1652 5900.7456 2556.7804 5662.1155 5892.957 5722.2048 4599.3723 49530588 one_ring_12diox Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 22392.7882 9182.4771 7214.5128 10632.8971 8394.0126 8768.3096 6401.1314 10615.5405 13126.2034 10202.7669 138999.2233 9798.4434 10654.5888 15582.0808 4367.3499 4367.3499 6211.3217 18130.2793 5511.7618 11744.9417 18010.9627 21909.552 4947.6272 9874.4634 11035.423 6200.9543 11291.3902 18022.2466 11199.7247 5302.8218 7866.9286 7786.489 5154.7914 10943.5652 345864636 fccab Sulfur Sulfide Oxidation NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 24067.3547 45854.1807 42933.9039 16843.7359 14124.4092 71431.7113 32937.2025 18149.7563 23969.8958 393733.1429 772705.143 24774.7934 24249.6783 32981.6406 22625.432 22625.432 11309.8352 39383.786 27015.6829 18669.764 36948.7336 30430.4699 14441.2859 11085.9874 25540.0266 50728.9308 47018.3723 49100.362 26736.8232 9695.7184 14649.4481 17266.9588 11996.3661 27362.7641 17232055 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6089.2465 5231.3847 19096.1774 9222.0585 24876.041 9525.3574 7766.2535 5768.7337 8257.5316 134889.3547 18129.4933 6217.936 4954.8739 5437.2691 5437.2691 5388.6663 9672.4612 5636.575 5425.4219 18155.8247 3013.1031 9972.5603 13092.9716 21989.9728 16830.1479 4593.3041 7639.2671 3988.5017 6336.9844 7034.0438 5925.117 6637.8766 315262253 cysJ Sulfur Reduction NA Mycobacterium sp. Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 46731.1575 21488.3529 215793.1158 59682.7324 18356.9775 23681.2877 18932.8408 16987.7206 32495.4092 46042.9569 41746.6986 628185.522 30532.3034 38280.8674 63724.3338 37398.5953 37398.5953 11364.9419 43166.9263 31693.202 29209.6603 12238.0577 17842.6341 42067.6493 76742.8218 45556.0507 41682.1742 46621.0002 29183.7557 31033.2973 11817.0946 34634.2404 31625.6437 25507.2019 31518.6621 388276188 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4997.3765 3520.7991 2776.7954 4296.8474 2869.0148 2869.0148 6275.3038 3832.4607 5616.8036 2056.9052 5319.3743 9346.3631 375058029 fcba Organic Remediation Aromatics Chlorinated aromatics Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 127644.3134 15339.482 14080.0465 18907.1454 11948.1853 28425.8613 21164.4562 99915.9863 28572.5354 35884.8157 220002.1941 25936.6471 50353.3597 161801.0452 20219.8489 20219.8489 23668.3917 59683.7037 20156.677 24323.9028 35764.6451 22980.2229 35211.4576 30375.938 73652.1919 16172.9391 47200.186 23951.628 41699.0907 14640.558 22130.2472 38905.6818 20435.1253 42948.5968 335421198 B_lactamase_A Virulence Antibiotic resistance Degradation Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 20963.3915 27712.0164 12298.3812 13885.7238 5380.1243 31834.7699 25734.8298 18773.1015 16409.2242 23396.6498 77329.3661 247543.0366 62842.3699 17440.7717 18756.4794 19530.2822 19530.2822 40232.6331 120833.4977 23362.5955 128458.4781 42100.7476 228779.0755 34348.19 137428.2584 38096.2177 48666.2777 153425.5211 48322.5418 37592.0368 30273.842 29444.2352 28630.0618 17520.6247 10489.3891 260940246 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 9413.5994 7719.2748 4905.8695 74165.0914 5462.6437 5583.5862 17471.0455 8717.8836 4100.2974 221748.4788 12276.8596 10842.4226 6567.4456 5530.0802 5530.0802 6127.8067 13825.4899 8552.7755 10163.8795 13135.0121 8481.0444 4693.8861 5439.9902 11703.2994 6565.416 23871.781 11373.654 17645.0394 5103.7818 7618.7223 8030.6425 6140.7922 18745.5213 91690340 rubisco Carbon Cycling Carbon fixation Calvin cycle Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 230326.4451 47686.136 170560.4118 91838.9505 460180.1383 85594.4523 235968.4911 148059.1109 98407.8031 140479.8113 191151.2296 181244.8767 6650897.0332 123263.7282 161787.2606 271471.7602 167847.8162 167847.8162 210223.8146 131318.9939 76852.2209 196685.3025 311589.8669 402035.6191 93561.1636 173029.6826 180705.9398 83101.069 334457.0932 172749.0911 303820.7315 67657.8669 194306.6868 123993.0675 74023.5105 353918.4266 365817838 oxdb Organic Remediation Aromatics Nitoaromatics Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 21698.017 29770.6369 104072.8462 14116.0694 3243.0822 6915.9854 9186.4989 48276.3757 3753.6439 15280.2572 132710.901 5502.1941 14751.4579 6471.7422 13716.1459 13716.1459 5987.7406 24018.0196 11883.2855 9835.5691 52536.1132 6049.8364 5690.6736 5643.2686 8031.9488 95014.3219 12841.585 32027.7817 60650.1454 14996.1556 11836.3966 7328.0974 5368.5086 60476002 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 31739.6432 20059.9512 12101.5604 35168.5879 9481.9734 12347.2389 11492.1126 15267.6741 12998.701 52024.2673 95007.4466 257846.4738 23626.1609 48247.3298 34520.0691 25343.2551 25343.2551 22369.1045 44668.8178 27014.3855 62986.1445 513616.0812 23680.916 26616.2711 32342.9312 41347.4571 14294.1177 425107.7134 34504.2069 33077.9075 12046.6855 27410.2735 22112.7132 140893.236 57001.0976 381381974 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 27214.8101 25654.5559 39621.8242 11666.6586 6720.1332 12557.4686 28804.037 2752.145 77786.6466 30973.1876 15552.618 495556.412 26589.8616 20299.5851 28800.7883 39899.9071 39899.9071 6831.65 34615.8835 20064.2757 15504.0113 26633.0537 12013.1943 10166.3832 13802.3599 52132.2084 37548.5022 22585.6779 14211.5744 19183.6386 10175.471 28736.3566 96205.7467 8303.8741 11198.695 358245995 amyA Carbon Cycling Carbon degradation Starch Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 106479.8233 20836.9032 138009.6805 49376.6 53938.9641 16118.4631 40629.3511 85648.1412 37162.7554 42012.4648 66862.3834 41700.7486 1170296.9612 53915.3299 72449.5348 71596.5893 43865.338 43865.338 74676.7786 85173.6134 52291.8345 257193.5718 71662.5802 136168.8054 50003.1378 44806.8161 52762.8834 64437.031 148660.9569 66623.3305 72199.5865 27422.6826 59642.3205 52244.0641 38024.0152 236314.1446 89512924 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5214.8239 5746.5579 3937.5978 4069.5717 2831.5839 6726.7318 10412.0596 80659.5767 3828.2431 4433.4915 2232.646 2232.646 4095.3511 9131.9101 7607.374 7247.8984 3203.1669 3722.9948 9877.8896 7094.3343 13502.902 12629.8848 9593.0536 4926.2774 4805.6142 4292.7913 94310455 tktA Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 11281.4374 5889.7685 10496.94 40667.3693 2489.6365 4330.5525 15637.9704 5539.8859 30818.9593 80824.3653 5596.2953 4599.779 24540.4307 6338.5458 6338.5458 3688.7018 6196.438 16758.4052 17032.5665 3035.9598 3736.8615 7446.6207 30123.9797 10699.627 13011.6552 4802.9294 4860.9945 5864.1929 5140.6865 80101.8733 380774147 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 25978.6191 6923.7664 17066.1643 8015.5032 66743.0933 6386.5061 5289.383 5469.9856 157592.656 5625.7581 12800.7353 16111.0403 16111.0403 4862.1069 25049.4806 4304.0828 20912.4939 25692.1703 9265.7053 4489.8886 5671.3628 6988.8889 18500.243 17159.6386 16459.6005 10295.2991 9437.2396 6426.7269 2660.7678 23250.9638 336451374 ppx Phosphorus Polyphosphate degradation NA Idiomarina sp. A28L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina; 5009.8414 12509.9148 2352.2534 2420.4737 4427.9584 61558.0398 2097.1791 2097.1791 6459.6187 5630.8109 2762.1407 6729.1837 11888.3104 4253.4177 6371.1511 3241.6391 4577.1488 5661.6556 109290291 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4244.6847 5644.2015 13039.1572 2385.1937 3333.7055 5456.6439 111540.1953 4868.8783 6007.3208 5180.0853 3533.9451 3533.9451 2723.5166 9748.6184 6847.7981 5728.5059 6523.1504 2804.4681 12467.9697 2549.9082 12303.9709 8124.5065 6941.7328 3057.7116 4372.1343 4267.5318 2323.0227 5409.7868 116634755 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4907.539 9518.1986 2458.3718 5530.9008 6351.7119 3473.2188 6129.8962 3327.7485 2326.8866 2326.8866 2863.0613 15233.0537 5292.2941 5857.2874 8536.8179 11246.9666 2913.923 3232.8911 9218.3901 10146.1214 11254.2026 3120.3525 4933.5784 5634.6416 3140.3365 9541.4607 35212659 ccmN Carbon Cycling Carbon fixation Bacterial Microcompartments Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 31208.6631 11214.715 12725.055 7446.9096 4861.3831 10684.9305 6885.6304 25993.8594 19858.131 17494.343 161672.2782 12136.0795 17342.6212 13669.3787 12239.6623 12239.6623 10959.5345 26481.3731 12455.0238 23477.1109 17211.022 9507.5732 10056.7772 15958.4572 16727.0434 7993.8541 25463.6302 9931.9382 16708.5063 11553.5509 111074.1058 17065.8245 41876.0598 45687.1467 378824684 mer Metal Homeostasis Mercury Detoxification Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 11725.2262 7509.5122 10907.872 19785.3922 3790.1415 6990.9414 27480.02 7142.4115 178971.8759 17315.6669 6559.6049 6923.7007 6923.7007 7572.5991 16152.4584 11786.2794 6839.714 15456.321 9211.6387 6500.7841 5360.6172 19255.7521 7225.125 26270.7673 10743.7349 16930.31 9675.1589 8771.9675 6122.1808 5890.9922 14621.1387 30269591 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 26282.8195 7006.5122 21163.7544 8005.4313 8069.7882 3967.4138 8937.7222 13382.2238 9683.6217 18760.8621 47250.8812 174628.2842 7650.4998 21581.3087 183104.9243 15871.3506 15871.3506 5169.204 18872.4639 8857.1828 20315.1315 21252.4282 14857.6492 5732.3527 7907.8557 19622.9161 9749.2388 34544.9446 18501.9816 17382.7965 6476.9245 16174.576 15475.5298 4481.7527 9656.7137 269955026 endochitinase Carbon Cycling Carbon degradation Chitin Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 186534.8807 30123.2772 70778.7063 61984.2565 94470.7571 73953.3698 65437.0079 204838.1839 124707.1652 102265.4048 78098.011 88224.2826 1594849.5122 101005.7658 206543.4108 151140.9641 329722.7995 329722.7995 44178.6705 106922.7398 59205.7565 220076.4458 152067.2586 96106.3458 94665.6796 107304.2576 81353.6849 47328.1892 156392.8841 96683.1469 94638.2325 52860.8304 52674.6669 98512.4373 37851.5822 85580.3187 388589458 poba Organic Remediation Aromatics Aromatic carboxylic acid Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 25100.0395 42567.2525 336533.6685 14791.7749 32499.503 5403.9658 14200.9415 15916.3744 9113.9193 20351.0806 28628.1565 11832.0019 538581.1013 19163.0017 36596.4351 55517.9516 32963.3899 32963.3899 23020.1298 40610.3065 21304.9794 21582.6343 30159.8835 16216.9563 25017.0627 12352.7364 21615.1173 12610.0698 36653.0113 22704.4129 31638.9774 10331.6361 13802.6769 24515.3725 16782.438 23628.502 336101515 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 14565.9954 26218.4523 11486.0115 25195.7759 26142.3954 7838.9075 16704.6766 54814.9776 10769.5008 13437.3439 15188.9801 7195.5625 385948.7122 40471.8301 34896.5306 12902.2811 40133.1826 40133.1826 10078.3099 21349.0411 17989.0032 37054.2384 16812.9598 24376.6115 10365.8412 10845.3009 27635.0728 15755.5133 171699.2931 10443.9882 23559.184 16016.733 18575.7322 12971.9485 14751.6889 35282.4958 386401344 nbac Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7958.2795 13298.885 8688.2981 4318.0411 6057.0989 6682.5506 8191.0982 7267.4633 3338.065 178790.8258 8898.3332 5421.8077 5097.0917 4038.0077 4038.0077 5835.6043 9249.284 11236.1535 6167.9437 9135.2265 7598.2847 3125.4961 4250.4051 9764.1378 3267.4061 18821.4197 10379.8279 12166.6414 4385.5482 5379.7769 5621.35 4206.5888 13417.5515 351683042 cysJ Sulfur Reduction NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 5048.5473 3113.8728 2997.838 3292.3531 3884.425 2591.4024 68572.8201 5631.4571 3789.8989 4430.8782 14911.3944 6357.0301 6689.4596 5682.4994 4100.0271 2496.6535 4419.6061 8063.38 12861.4777 6664.0271 7629.7595 4063.5148 4576.2702 3574.0524 5541.1934 23492715 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 37430.7368 12440.8775 14260.1028 21837.5129 5437.0833 4695.4621 16296.8519 57693.5687 14095.0454 16781.9383 10583.8024 191377.9804 30195.0381 254801.3049 57711.8726 29829.6747 29829.6747 10541.3231 70543.2843 14007.8567 60284.1491 24240.0508 16188.9734 4700.1064 36568.0045 18805.9254 5660.2839 26820.1055 13955.6888 26128.4179 5799.8563 13870.8107 24460.2438 4766.3625 222709.3792 268549428 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 7926.7126 17410.5595 5760.1758 6442.4706 2517.8319 9543.3423 2214.0153 2486.3689 5061.4031 3285.243 3188.2556 11344.3225 339289966 vana Carbon Cycling Carbon degradation Vanillin/Lignin Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 5731.7649 5010.7248 6229.9502 62769.0695 4665.4867 5959.6666 2267.2246 2267.2246 5804.8547 4824.8293 11801.5551 2600.5657 6175.7343 2385.3075 12720.1155 6114.4018 9262.4769 3284.5526 3782.2485 4710.3295 2739.6696 5230.0958 163869159 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 61375.2777 89907.5022 14415.8543 8505.5814 8002.9475 5674.8851 65628.0498 15283.2147 3099.5278 3099.5278 9278.2032 4157.8156 4926.854 3449.4167 3619.2926 8888.5171 3790.6955 13019.2419 5505.983 6334.9518 4468.8046 4631.0777 3986.5583 2362.4765 383339802 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 32245.6123 14844.7686 10781.5718 21420.8936 29924.6165 24341.0924 31170.6547 9716.993 58019.2122 8971.873 290045.3633 16631.8923 16578.9269 20935.3994 8339.3965 8339.3965 13890.7456 41112.6724 16910.539 18080.4658 34413.1661 36678.3379 9248.7834 20225.3843 47273.0895 9912.412 38113.0366 40463.6813 30902.6435 10409.9827 20062.4716 25139.2569 17899.3884 25125.7326 288912732 endoglucanase Carbon Cycling Carbon degradation Cellulose Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 152995.7199 15529.6226 105117.4979 69924.8648 63421.7702 37379.1629 71577.1125 43059.6447 44613.2729 116111.1263 82724.9799 73640.2183 1723085.4469 123377.8268 79791.0025 157495.795 93833.4688 93833.4688 50221.8841 93688.4223 50318.7056 64489.0342 87162.1913 47491.8973 36421.3298 52464.8825 98833.3929 40472.6837 208330.012 145474.5013 149058.7902 36676.2759 67895.3558 102318.6592 38322.8269 102832.7894 227821237 TIM Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 27179.1068 18460.6498 16408.2216 12779.1607 215132.1333 48015.5929 19032.0025 21459.8402 30853.2933 14793.325 14943.7574 1289430.8478 47767.2427 71161.918 19038.7985 17689.8896 17689.8896 21883.048 30222.81 15118.6444 45507.0303 30431.4702 16991.6509 35889.2518 13765.0166 19866.6463 25332.7376 50708.2606 20963.9002 23500.4324 13959.2023 26568.1103 43043.7694 14250.3799 14736.9233 333443030 PRI Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 9607.386 29703.7828 11338.5134 90595.6737 4183.9473 3929.2238 4743.336 16530.8658 5478.9906 104611.5444 7849.289 9788.4066 81712.1262 48061.9352 48061.9352 51335.7101 15086.2226 17473.01 12968.6145 8742.4703 9157.8262 4784.3637 7522.6151 10655.7629 5060.6536 58357.7012 13012.6016 16378.5575 6561.8362 7371.704 9090.0455 4963.0084 13802.2717 237899460 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5728.1497 38680.003 3223.4808 6120.1091 6048.262 6014.0622 17998.8569 42444.0892 42444.0892 9978.1523 4722.9281 41846.4992 6350.8287 25910.8282 6426.9314 3547.0944 8876.8863 6043.5305 1819.6759 3543.8458 5852.8205 3818.4801 13637.192 86555494 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 128098.1088 60724.4003 181650.6199 1814886.3464 99859.8036 116262.243 74807.7491 131208.8537 41244.4004 64301.8182 135884.6818 192033.6869 1806748.3547 63797.5287 146039.2137 228244.5971 262937.9553 262937.9553 62632.9697 134425.5411 144743.9215 93146.0504 157394.3803 245006.732 51478.3499 81425.4297 142118.5824 108803.5649 283134.733 95591.4402 172960.7377 63534.2803 87989.1605 120407.2713 55645.345 294408.8826 331022213 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 5325.3328 3111.8948 2548.6774 2929.7914 3196.1837 5222.4085 2683.9557 92094.3362 5569.2614 1906.6353 1906.6353 3434.5665 7819.2834 11664.0843 6413.9121 2281.812 6407.285 6767.1796 4178.4777 17710.3007 4112.4588 9229.7343 3269.2271 2718.2645 2843.529 5520.5807 49072886 phta Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 990986.4028 494584.6854 588771.198 1867146.7111 3089284.4545 431327.2728 458323.6485 694197.6588 504093.6537 535149.6799 663073.6083 374778.1411 17426372.5052 878396.2458 724301.3379 1673063.9103 590380.2303 590380.2303 485908.6313 699333.5532 521384.2192 696541.6876 858908.5087 1396854.6907 449363.646 430743.3351 1138474.992 307666.2678 1196816.1679 829565.9921 709909.4799 438673.5833 392687.5776 433541.9352 434767.3951 879275.1646 163811600 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 511195.9845 1387129.9043 220247.1222 297774.2821 747261.9943 173800.9424 329376.5602 231132.4723 217900.9737 239005.1018 330788.0988 238904.8179 5755610.2359 421425.7512 675766.9273 590825.147 338659.1849 338659.1849 152406.928 363740.8304 209497.9555 264238.0037 266039.4035 242490.7084 205555.1572 200470.2175 219733.7985 142282.2124 821079.8528 270887.4376 275074.153 177140.7406 223108.469 231384.1689 120125.0386 384672.0685 78521708 nosz Nitrogen Denitrification NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 6472.4146 30363.0112 9258.0355 3619.8768 3437.8275 5011.0138 49344.8468 4792.3596 52466.3826 10665.7939 4273.0862 2032.3151 2032.3151 4611.4766 7073.535 7049.0167 6532.4979 7613.1382 10135.1369 6536.0441 2800.7805 7247.2934 2648.8301 13007.2668 9528.3087 7722.1685 3591.6897 3970.0242 3815.7046 3261.4544 8190.6178 239579601 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 5947.3492 12349.3737 8246.4557 22766.6282 3917.5073 9592.6429 8655.7131 7318.1483 4111.4827 8372.9396 4331.7768 4331.7768 12091.5545 8004.3529 7448.8377 7283.4596 4714.9475 4664.2845 4091.1164 8187.4152 12068.596 12655.4078 20738.8474 18167.7576 3182.4502 11352.3745 16262.5935 4048.5557 7428.0528 62391506 mdld Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 6557.5415 4650.3444 8756.9057 2557.468 25664.1876 61827.4498 6858.5648 4252.1298 3151.0284 6413.8427 4493.9772 7236.8036 7257.6102 8480.5537 6497.3248 13535.1329 3684.3856 3620.6578 4072.0192 2468.8227 5134.5368 125601750 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4367.6654 24665.6639 15412.663 42313.1995 5413.6625 4537.4249 13023.1303 40096.6182 18801.0163 2827.2802 2350.7274 228480945 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 35122.6993 5653.0328 12061.6852 38644.815 274207.8939 16083.8531 7503.0317 14095.4164 22248.3097 11518.2081 201651.3066 11041.7614 14882.7341 46579.0766 7528.6837 7528.6837 25374.8861 25519.8041 14975.6206 10244.6971 46607.1172 27684.2376 8668.2764 9622.4253 14821.8419 11983.9453 33564.3391 15702.4187 16346.7071 9356.4282 8543.2089 10219.1817 34548.234 19289.5548 182382460 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 240673.4156 22435.1636 128373.7386 440880.821 544194.6464 768099.8052 371792.5918 452240.9556 214012.9584 264260.5325 363207.8807 251152.701 3765890.5846 294484.4957 228336.2459 310519.2232 427033.8714 427033.8714 166707.8853 462092.6993 125632.0936 274273.778 1402129.1669 663362.5849 299894.7335 269808.0134 313997.146 253738.8989 578795.7816 232872.6083 435320.425 157136.1951 270502.7611 280577.3326 230216.1123 1059882.4769 157912623 dmdA Sulfur DMSP degradation NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 19784.764 165824.7824 7224.3288 3915.1109 26059.7239 9291.7382 155794.1525 52449.1217 2838.3586 2838.3586 4839.3186 9860.6928 6981.5516 11243.0264 10813.9143 8838.748 6399.9222 7605.8823 5107.182 63376.2427 11266.9732 11985.0852 2706.0377 6677.8197 6967.9503 4033.0815 11418.0251 354614973 linb Organic Remediation Pesticides related compound NA Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 26206.6835 19932.7416 175118.3184 5339.2545 7470.3207 12760.9125 14488.1698 7608.373 35205.8058 11447.0636 187936.4114 28355.8079 12408.6816 19928.6677 18309.4608 18309.4608 5651.0338 24226.4739 7412.2827 8414.9152 10257.795 40292.2755 8744.2338 18964.9163 34868.0457 83596.2548 20701.184 17927.2284 11372.6916 14891.1847 11879.502 5641.8658 23345.9631 296184451 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum subsp. longum JDM301 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 26867.7481 8899.6713 50311.7428 13630.6581 5346.5227 26856.0067 47500.3578 31056.5863 17722.7388 25838.3116 18277.5363 355759.3446 27683.1565 18182.5538 57421.5141 13718.1519 13718.1519 11263.5632 43789.1168 13945.8884 15836.5518 31080.3977 27612.6806 14514.1053 9959.7273 19579.2422 11610.4836 38503.7349 73071.007 22942.9134 11637.6385 13339.5041 30363.4868 15966.8265 32067.1198 164456130 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 24789.3096 24367.9655 7726.9833 12132.6154 5376.0928 4650.6377 5058.9632 2598.9587 9088.9794 13082.5111 9048.7329 299543.1839 13890.0559 13685.6015 20787.5568 27774.3987 27774.3987 12500.9002 18220.2183 12789.0579 7224.5095 20868.5586 16890.0989 21705.5497 6044.7776 17940.4179 13736.1038 51373.9659 21241.6966 34509.091 4287.7022 12258.5571 10452.916 7063.816 36502.7521 77390478 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 48000.6412 26488.891 35631.3377 19446.8205 6298.736 29215.5438 210696.3269 58469.1743 54342.4915 61329.6351 42937.3534 4514406.7041 56189.4838 44122.8081 153510.1961 152031.388 152031.388 38352.891 74596.0588 44252.0243 132246.6146 158377.3981 76915.828 39846.8512 50487.4794 82141.8356 107004.9531 269830.0779 116363.4374 67000.2662 36819.9957 43211.0503 59175.7194 93199.7272 507869.7411 326953729 linb Organic Remediation Pesticides related compound NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 25950.2781 24060.0235 9012.0305 6174.2376 15418.6545 22819.5996 27602.645 14196.6 428821.0964 25285.2985 281642.5399 22469.6879 20384.6783 27180.5747 32551.2303 32551.2303 30097.3673 121207.5403 43760.4074 106446.0422 87791.2424 134588.6575 93825.4477 34901.5392 33914.1161 39660.0595 63381.5657 57349.2955 34081.625 10579.7898 29487.5894 39134.8328 21951.5231 106263.6353 164456198 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 24223.422 10789.3355 15088.7325 13391.4328 14368.4456 20397.0724 19172.4206 29821.3376 79030.9837 19177.2231 64130.4992 378442.6095 16317.526 26344.1556 44007.1044 25360.7462 25360.7462 10403.9252 29978.2723 15752.411 13564.1897 15671.1748 12489.477 10435.4062 36023.9115 53129.9572 14100.5972 42314.4296 13322.7418 22520.2719 13188.8621 16238.542 28049.8262 29400.5784 34056.5139 119499125 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 38670.5609 43042.4265 65801.2822 64088.5972 181326.9766 123256.515 27735.9318 68894.0461 32992.6838 104751.5871 463523.9261 64528.5672 62146.2487 68061.0666 34000.8596 34000.8596 20754.8205 75117.6028 46138.7256 39634.4011 31768.0123 47041.8534 29610.7733 37575.8197 42905.1566 164378.9422 303226.5486 55178.7735 129796.2488 59000.661 54535.2435 34357.3725 33168.8267 43756.8846 157679411 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6065.3868 4347.8642 18849.251 2215.65 7047.762 4421.2201 22592.5466 3468.9241 99331.4703 5950.3519 3545.4771 68962.6037 10242.7455 10242.7455 4934.2814 8505.3784 6116.0798 4972.8641 7353.4175 55055.0008 3057.5627 3274.2419 8337.6904 3389.2214 10056.2684 6869.3454 5551.3745 4467.2187 3799.9477 6701.4388 2825.9175 5735.9032 8515799 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 17019.6448 6338.4455 233052.0842 9300.4106 10258.5679 11224.0771 4726.3535 10980.4394 10259.2759 12329.0923 155913.1234 16722.684 48551.0264 5987.5194 7006.0323 7006.0323 10425.0015 22146.6266 16430.5948 8829.2538 13379.267 8820.4179 7492.7923 2602.1103 14316.5185 7151.8366 20340.0995 7863.3665 17163.1672 12293.8839 11329.3653 8768.7225 6777.2404 11856.8794 377555099 amyA Carbon Cycling Carbon degradation Starch Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 7588.5231 11244.7206 64313.7184 186192.2427 18170.7945 6907.7036 251847179 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 10408.1844 13352.1615 15986.1418 12388.0594 4369.2908 10547.2646 5944.6705 7158.9774 18890.1661 10073.5806 325497.8985 9621.0537 23822.7604 8075.8584 12585.9274 12585.9274 7648.3237 29092.6924 17474.5722 91972.1837 20809.7773 17790.5822 11571.6637 15984.0404 23427.1495 8228.6464 29485.7065 8486.014 18603.1073 6303.6055 14928.5951 17864.4481 7199.7408 22677.2763 77378747 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10877.5568 5607.4029 15801.0547 20242.3579 27527.8903 8063.9058 3408.6971 13566.2823 9828.6652 17008.5262 92377.3167 13574.5058 13795.7128 7194.8507 33286.0883 33286.0883 7463.3036 40811.499 10570.6052 17665.0753 10072.1049 3999.6873 6562.2937 7989.8113 19928.2123 35697.0095 16164.9805 19940.2924 17959.7477 5266.6293 15740.9898 11207.0116 4005.2785 33989.9122 403205243 tfda Organic Remediation Aromatics Chlorinated aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 72962.3025 26914.0851 9775.4943 11864.142 8731.6681 4007.474 30266.3082 13425.3478 11295.094 11414.2415 15792.3349 143886.2994 14826.0484 9822.9938 8874.6804 20457.5202 20457.5202 5660.4529 16278.2296 9318.0474 5716.3671 11939.5208 13278.5304 11357.0424 42359.9045 8066.3525 8542.9641 22883.0973 7776.4658 20108.5058 6334.6628 9792.5651 7161.6697 5429.1484 9743.4161 344342075 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 33285.6085 78242.0336 30502.3522 42703.0762 18840.5057 22657.0792 45240.8882 17639.2704 21946.7757 42013.5449 21002.9135 629396.1424 48509.3131 75392.4703 32907.7059 19981.9495 19981.9495 22545.9319 51133.6805 44830.3955 40982.0144 28893.7741 51859.7327 16354.4659 25501.6186 44310.4087 95632.1011 92949.8429 46440.0514 59399.2061 62867.825 25140.1944 40600.3398 18621.5749 34651.2154 393775522 terc Metal Homeostasis Tellurium Detoxification Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 18724.8618 19488.7785 20229.4087 45103.2323 6395.3912 11077.4714 31446.5681 5932.1605 10944.6358 16189.4836 15100.2465 362064.1347 30714.4626 17281.0601 18266.2244 7502.9998 7502.9998 11807.3876 22550.0777 13096.1307 15305.4536 23260.88 25301.0322 32563.397 10336.4005 25414.5286 14417.0965 49974.94 27959.23 20168.2843 10094.3663 14218.9976 16813.0833 9314.1641 27827.9642 116226613 tehb Metal Homeostasis Tellurium Detoxification Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 8734.0201 7829.6813 9410.0523 9078.8757 4298.0088 5188.278 2991.3555 9999.3711 7925.6768 3871.2127 146772.0981 9064.6507 5972.0393 3643.5612 3643.5612 6194.3574 11484.461 10914.3437 10146.258 7911.8533 13762.6098 3754.2586 4111.338 8026.5021 4358.5309 15700.3772 7714.9478 10300.904 4596.6391 7376.2043 7466.6947 4410.1774 18462.6225 337759161 endoglucanase Carbon Cycling Carbon degradation Cellulose Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 88069.2027 44439.792 87422.9934 30633.5971 21446.0727 77140.3519 46020.1318 24485.1793 134239.2827 69454.0954 49140.075 514616.9608 66545.3705 37780.5965 24774.0165 94426.3487 94426.3487 39878.2423 109105.0656 35920.4844 69608.7558 61233.4974 22398.0058 25341.6393 61686.5939 43069.5561 47844.6347 200592.4336 56166.6374 67445.296 28187.0472 49608.5462 73636.6885 55882.1961 68176.7824 84704987 mer Metal Homeostasis Mercury Detoxification Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 9138.1384 6347.5695 17838.0757 5119.1371 2976.7356 5752.0938 4392.012 5008.7673 4104.9897 216132.3873 11433.1897 9929.7262 16946.7822 8139.3537 8139.3537 7952.3463 11059.0451 6849.7419 7808.8711 12852.8103 8628.827 2561.79 5852.7681 32159.3517 4043.0736 12859.681 8728.5261 15062.6449 3306.4091 5251.986 8115.2334 3419.6545 9225.5222 62512293 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12940.3725 17625.9684 25148.1267 5816.4016 18005.2359 15503.8105 2008.2273 6123.0518 14061.3709 7994.7636 185816.7877 9653.4527 10445.1933 7108.5411 13506.5116 13506.5116 7677.4823 13660.8218 12806.7906 7702.7415 13663.0474 5230.7684 5777.6912 11230.5949 16584.9371 12998.9388 19266.2199 16739.1961 23023.3378 8575.6613 17561.8162 19820.6633 10005.1792 7557.6342 359460903 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 34671.9222 194559.0117 47704.7834 44624.4009 13743.7398 22959.4179 97131.5439 19212.7677 70112.1651 49778.4695 21570.8744 536187.1676 40381.2137 40054.3174 79102.5284 29321.9923 29321.9923 23280.276 45101.7385 26345.0271 58110.7301 34598.0973 62257.5966 13973.8044 24391.5898 27819.065 15926.6238 46306.7802 22421.3521 53475.0549 33227.945 21291.7117 26398.7936 23237.9203 44726.2494 339887036 cysJ Sulfur Reduction NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 31246.9753 17510.4738 19936.2866 49802.4707 15950.7888 10957.8604 44740.1993 12610.8042 11299.1519 14751.8504 15738.661 274383.677 292165.9924 9776.1902 63521.746 20797.6459 20797.6459 9918.8128 20689.7916 16478.7358 11633.7727 13131.4519 18150.7592 8273.424 11011.8354 33660.4093 13250.5163 45093.0161 29130.1634 22857.7888 7052.2877 11801.5998 22773.2976 5141.7465 13182.6589 255079800 atzd Organic Remediation Herbicides related compound NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 21050.9844 5855.9529 68809.0259 6362.9459 15273.8205 14368.6383 11137.551 5560.5583 9699.5921 123400.983 169404.3744 10088.0631 19962.7051 17746.491 9438.7582 9438.7582 10087.6844 19792.4164 34497.9736 5240.9178 12632.8778 13907.1041 5002.924 31266.8684 13332.0554 15338.8896 96355.1865 16759.6497 26155.772 10640.2231 17015.3588 10183.899 11329.0676 16947.1324 302879701 ppx Phosphorus Polyphosphate degradation NA Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 92386.8178 102399.9849 9807.1596 13413.5042 2048.2092 5798.14 10170.8595 8452.8926 5883.7209 13671.6535 10118.7018 4437.9996 4437.9996 2644.4973 10189.6386 5136.0998 32189.8327 7010.7142 2499.0007 3738.6215 8754.6788 11938.4748 10382.9706 11339.4834 6205.6325 17726.454 5529.2373 284041910 xylj Organic Remediation Aromatics BTEX and related aromatics Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 4312.3374 4123.6209 5371.6596 5001.9333 6732.0338 4941.4251 2970.3453 4460.1547 4301.2381 68221.0543 3851.7738 4125.8425 3818.6119 3818.6119 3486.1276 9397.0522 5681.6931 8668.0143 8721.407 5109.8782 3815.8814 9672.3881 2940.825 11672.904 9145.1527 19851.0776 4222.0488 3975.2058 6806.7099 5964.9181 5063.0057 119391655 narg Nitrogen Denitrification NA Rhodococcus sp. D6-28 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 69308.7335 72472.8673 7854.8352 9772.7371 6502.3576 45458.7592 13360.4523 63649.5395 53902.3079 48021.4077 244552.6401 33286.3726 23868.6598 11915.5884 15213.134 15213.134 5427.5796 45921.7668 14301.1764 32958.7649 12638.2325 133410.6933 12849.8012 11073.5881 20333.8774 13448.0186 26335.8579 16271.8466 95188.8255 7243.4867 88231.5463 34574.9179 48546.6332 11533.1224 333919007 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 43555.8649 12069.2603 897343.4514 24473.2158 6785.3498 37317.4632 17114.6012 6103.7692 21312.0737 15390.3093 20998.9196 495328.3708 22045.084 29355.9048 32336.1138 20712.6953 20712.6953 22275.8272 49758.3839 19288.0783 38057.7847 25098.1626 78191.219 10868.2192 11321.1973 30605.7717 10831.3045 179940.2542 68878.1011 95637.333 11271.7735 15415.0811 12820.0119 11619.9254 69452.1468 169258899 ppx Phosphorus Polyphosphate degradation NA Anaerofustis stercorihominis DSM 17244 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Anaerofustis;species:Anaerofustis stercorihominis; 4762.1483 2895.3197 2269.8687 3182.7348 5498.1391 2458.9385 122891.8852 4497.1346 4994.4811 2715.7235 2715.7235 3618.9182 6457.6645 6367.8414 5287.3642 4678.9651 5750.8903 7627.1861 2455.9732 9666.6357 5109.9325 6530.2338 2044.5179 4072.4085 4057.3324 2704.2026 4559.2548 88062453 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 33662.8612 11506.7131 35668.5271 204416.4348 60736.6074 14047.9395 40246.4871 210470.3318 32210.6064 36921.3192 47513.0515 32321.6849 891088.9525 52926.4243 50825.7058 77566.9796 31649.766 31649.766 31552.6629 49200.227 35888.9236 55936.7341 49059.3371 66852.2897 25642.1121 24413.9967 43759.1261 21349.1905 136656.1781 77201.9676 66337.7467 45944.6114 46236.601 29988.4533 27790.8117 69560.319 374413666 dsra Sulfur sulfite reduction NA uncultured prokaryote 91353.1733 16348.7951 6680.2427 9689.1727 127474.6171 25101.0153 44280.248 8416.1755 9070.4954 31862.7755 1614793.9398 110435.8581 75053.4727 36033.7187 26950.0095 26950.0095 6055.067 37706.0188 16466.0626 20062.1134 66012.4045 8422.7952 11736.5166 48660.8789 13243.0199 54685.8357 93678.6507 24522.2832 301878.4738 12698.5467 132239.0689 13330.3667 44131.0546 222709.4101 88643378 dsrB Sulfur sulfite reduction NA uncultured prokaryote 9483.661 20991.505 11284.1194 8003.819 8928.4653 7955.516 8082.807 7238.2168 20532.3029 9447.3716 188263.4899 17815.5068 12891.1999 19893.048 3890.0254 3890.0254 5854.1328 17315.6243 11865.131 12878.7098 13195.8084 19107.8152 10637.5924 10566.5881 19264.6948 6530.7002 20540.3992 16689.3114 22825.3378 6126.8592 11867.66 11842.8576 9751.9076 23712.5533 319942989 cysJ Sulfur Reduction NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 15089.3414 11807.3807 6536.1088 4688.907 7692.6243 8918.9131 16490.5342 56580.4811 11954.7031 8743.547 7094.7984 14702.6002 14279.755 7214.9925 4371.0754 4371.0754 7730.0017 15152.3181 10962.382 9837.4634 16565.3418 23469.5422 67355.9276 7412.6111 12468.7483 9903.9823 35810.1138 20426.0054 16522.5074 59248.3599 23279.242 10335.9459 9363.9187 14726.9316 119897238 nasa Nitrogen Assimilatory N reduction NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5789.7211 8017.5221 5440.9804 9003.7263 6410.1663 5191.6799 4453.0811 7871.8471 5815.7224 114010.2139 7782.2046 4191.7002 4884.7155 7297.0836 7297.0836 4536.5839 17323.361 6239.6 6611.6748 6994.5547 15988.89 2950.5709 3991.1961 10063.5033 5189.5813 17027.7098 5489.518 10051.6133 3509.7158 8621.3467 8928.0021 6072.8596 8655.5384 315654637 ppx Phosphorus Polyphosphate degradation NA Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 9928.7698 20220.0904 6450.0367 172155.7776 9512.1606 8846.9246 7644.1226 5060.3764 9447.4545 7470.4689 7305.8508 181204.7063 15464.6462 12995.0164 8002.1875 8855.515 8855.515 6550.475 10714.5698 9753.7756 15041.0099 15182.0374 7250.3962 3222.7992 7057.2797 14463.3263 4296.8169 25045.3142 33659.2389 13591.8461 3296.2819 13539.698 7940.7701 3468.3224 11455.8653 357013472 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 173086.0344 120606.8285 43939.8707 83675.1332 81502.29 39813.2691 98084.2328 118598.7988 68076.9875 85144.5026 86553.7972 50432.6293 2722149.4328 85757.8733 201512.5478 101759.0565 76133.5666 76133.5666 47303.4366 225309.1202 124838.7948 115005.5663 138567.444 103080.609 87437.893 39330.6491 89333.6821 90098.0385 169705.295 91618.0305 105902.8438 74512.2557 57143.6822 94928.6561 46861.9542 127155.9892 88790369 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 16076.2688 4391.5456 7725.7159 8547.9672 25434.8176 25080.3956 7524.532 7470.1612 9527.4428 328623.9536 10825.5372 8715.6318 16540.2695 20966.7981 20966.7981 3081.1446 12415.3731 9510.9145 11807.6122 14512.098 4115.4411 6127.7273 9541.4222 8045.6755 12495.702 6374.094 17069.0962 34605.7624 9513.5802 5999.3297 8824.1484 6241.7402 23120.1169 161384634 poba Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 108968.06 367223.1486 79215.7173 90384.7809 94018.691 71211.1131 70171.4143 137749.0848 90469.81 79141.5263 225778.0326 124071.9342 3455946.8516 94205.9876 142646.6096 238657.251 131499.7166 131499.7166 96758.454 144712.2116 70647.6458 251449.0046 517443.3396 228032.7463 91386.8737 91689.2665 147066.0346 118454.7314 248079.9757 88253.2468 135343.7016 57419.4445 101835.1338 144108.8665 77150.7827 140886.7558 353192815 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 22080.1063 343836.0938 23405.0177 69795.049 27039.2373 17219.4005 21878.2901 908080.8461 33021.6404 44819.7564 24407.8338 701688.5565 27819.2507 25841.4409 32161.7991 35574.1282 35574.1282 15123.7038 45610.7485 22157.022 28534.527 26225.8857 121737.4418 12871.7825 24521.0733 42826.4279 14230.863 60058.9613 64338.209 41619.6574 15697.6481 26054.7697 24147.5961 17175.558 235417.3327 216857 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6586.0423 2997.6998 2273.7192 4206.6782 11549.4709 3235.7247 57873.9668 4672.6192 4260.4932 5097.8453 2793.6192 2793.6192 10210.5482 3874.5129 8492.5281 6605.0406 5049.312 2202.589 3175.7039 22164.0108 2937.4119 10619.0367 7054.9004 9728.156 3388.2801 4204.6327 10452.1682 7166.308 197718482 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9822.3997 4632.6381 3338.4648 2933.1276 5772.03 8681.9428 3788.0101 140624.8277 10654.5276 8362.3036 4592.3697 2673.5683 2673.5683 4147.3329 8787.3854 7050.5456 9264.5818 6060.2527 9210.7432 5121.6858 3864.8583 7454.7175 2572.0617 4676.141 4415.8202 8850.9332 3342.2068 5512.1687 5154.3178 2856.2722 6517.9537 108763120 cysI Sulfur Other NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 116114.5188 34101.6493 53800.1872 116784.4744 269368.0462 48787.6787 41940.5739 206067.1437 72027.4397 88963.9837 78681.1636 84695.6066 8518795.4351 78754.8865 100462.8537 146695.4984 92751.5132 92751.5132 56350.7426 136319.5009 80913.3091 82023.9053 75349.6875 109753.9253 51576.671 78349.0739 115736.6286 74462.3875 175173.5953 233334.3174 129604.791 48027.3195 63527.6383 158299.4134 49065.4583 125116.6109 12666724 glucoamylase Carbon Cycling Carbon degradation Starch Talaromyces emersonii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Rasamsonia; 4848.2805 17140.1855 6246.2158 7019.7707 3086.4178 4472.4701 2187.2735 3770.0162 13405.0693 2427.1527 141671.6801 7078.9205 5906.3902 3380.8243 3380.8243 3962.6687 8382.0302 7486.3472 7606.0842 6990.3271 5949.0802 4678.3256 5158.6138 8365.7191 2934.5874 11929.6205 8491.4868 10535.3832 3817.4647 5255.0241 48795.201 2920.2804 12029.7247 110819316 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9299.1806 33626.7239 11463.356 2318.1456 4947.1886 4027.5621 2415.8857 92177.3137 3603.672 4870.1413 10317.1626 28218.1507 28218.1507 8109.8432 5972.7586 3861.8038 6397.7983 3042.6054 4659.9894 6689.0307 2400.4828 13537.5422 4116.3412 5595.481 2554.944 5120.8463 3075.3109 2670.3725 9405.4586 33574493 urec Nitrogen Ammonification NA Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 25963.5515 64711.8867 48951.0895 6519.4104 4435.8003 7711.7393 11652.5436 39970.6433 8925.7232 9145.872 154895.1127 7025.5593 21715.5057 25200.3572 25200.3572 6255.073 17249.7082 14561.0845 8207.2664 13428.3382 10893.8384 3813.4833 6243.1695 10276.5357 23141.7339 33623.8801 9867.0778 14320.5968 9190.5787 5939.5459 7309.5931 4883.9793 55551.9451 361054942 xylj Organic Remediation Aromatics BTEX and related aromatics Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 8426.8464 14781.408 39756.4378 6578.9755 4904.714 4117.2627 8301.8622 11352.9587 5052.5544 169137.0971 10541.9325 11225.3154 8582.1068 3810.0011 3810.0011 7089.8765 15915.1395 7434.2887 39577.3956 12795.2717 16612.6058 7686.2912 15815.2986 11405.7041 4038.3151 18408.5055 4483.1124 12673.9294 4756.0347 6630.6232 8351.9882 4786.7188 13188.3883 302438091 atza Organic Remediation Herbicides related compound NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 11498.2504 5250.0036 7454.2993 43453.0126 20903.8799 6394.4614 2943.9857 5598.6944 10127.4876 6589.1879 94063.7749 5817.0439 8476.7054 5671.7852 5678.0526 5678.0526 9597.6965 14707.5908 10986.4084 4882.9252 15048.8806 7209.1603 5925.6457 4596.1043 12787.5715 13574.0109 26869.4265 17892.229 14564.358 5314.4308 8295.6672 9579.6087 8332.9141 8926.261 255957271 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 41089.0342 35458.0597 15343.6943 5843.9133 3047.617 9089.7718 6752.9275 12785.9228 4707677.3081 13251.9765 14540.0525 12229.1724 136873.4691 136873.4691 11576.979 40894.3891 18384.2747 39975.7762 48679.1627 8721.4405 21583.2773 20110.6905 15934.7339 13328.6781 104147.2723 10902.2563 16496.4491 12075.6579 7725.037 7792.8019 77114.4923 49892.3354 56476065 FBPase Carbon Cycling Carbon fixation Calvin cycle Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 7913.0379 4517.3729 3692.429 3336.602 2247.416 5461.6816 5452.7573 3173.2304 167320.6695 5941.9904 5250.1822 2218.6991 2218.6991 9220.8771 11965.978 6923.4149 5120.6785 10679.3779 26806.6818 8454.8082 4537.5918 6986.6756 2748.5089 15030.7011 5181.1496 11167.1095 4927.5012 4711.9676 6445.1184 5353.4898 12272.6136 299797336 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 136702.5349 8245.6387 296019.2067 22674.3282 32375.8726 9905.601 19606.9368 13743.0349 15663.6716 13476.3041 12809.7001 290458.062 18041.6899 25662.4167 10982.1408 8786.5003 8786.5003 10160.1409 27473.5842 10055.0893 21110.3759 20076.8188 11907.7819 16682.3265 11311.7661 17073.1802 21407.4389 118634.7074 31162.7011 24184.4779 7523.5313 21761.7194 15864.2926 12797.9345 15555.3715 375129927 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 4468.9643 5421.0804 2603.4292 2469.6685 3204.1273 4295.9645 7382.2737 2720.6655 144235.341 6152.2159 7263.0631 2567.2643 2567.2643 4160.3375 8108.6461 7385.5898 6467.767 8489.844 4367.0528 2547.0758 3798.0309 7891.0505 3319.0474 11422.0647 5640.8506 8289.4413 3989.1923 3229.6979 5204.6849 2765.7411 10203.7641 2388941 amyA Carbon Cycling Carbon degradation Starch Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 776685.8028 6806.5165 11483.6793 6886.1294 19341.3711 8762.8779 10977.1878 6962.2677 193792.909 12585.5191 9124.8728 25975.2206 5852.9337 5852.9337 6418.376 16095.513 12317.2111 20833.4505 15685.1071 7966.8656 6542.1547 11970.0129 8505.8546 10399.8382 35981.4079 15431.1932 47015.3773 4880.6551 11975.0134 6599.4028 6233.4354 53225.2105 407997904 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas syringae pv. avellanae str. ISPaVe037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 4650.8224 8945.9137 3326.7768 5429.5511 2681.4328 33819.8706 5882.1183 2361.9912 10740.9963 1651943 Sir Sulfur sulfite reduction NA Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 10975.8328 8851.3587 7703.9525 13523.8629 8498.1698 6480.3941 3433.9934 11416.5523 11540.7923 6396.6299 205236.1729 13672.1217 8469.7046 6402.4736 3538.7617 3538.7617 9996.744 37787.4846 24856.7954 17298.2865 21112.3442 28016.4277 10432.4969 6383.1741 18533.5596 34042.0105 37046.5116 9555.8431 20496.7426 8546.7658 16311.732 10687.187 6293.7149 19485.8598 295414330 PRI Carbon Cycling Carbon fixation Calvin cycle Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 7795.7765 31764.1272 2957.3679 2471.5935 60801.059 4674.5054 3509.9976 3509.9976 3797.1423 1806.3428 389590174 catechol_b Organic Remediation Aromatics Other aromatics Sphingobium indicum B90A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium indicum; 18382.1785 41959.6324 11695.3585 16237.0377 9020.2018 12996.1666 12134.9957 29502.0037 26968.8841 9992.892 347172.9474 14164.3178 26282.9166 20887.8678 32853.2854 32853.2854 17244.8318 34193.2572 16246.1171 13913.8811 32312.3917 28491.8698 10515.0985 15527.9613 15585.7832 12797.802 34634.8458 8964.1549 19836.5736 14009.3825 28820.5184 20687.3323 18099.059 19097.352 387888075 arsc Metal Homeostasis Arsenic Detoxification Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 43565.1044 32210.8871 24793.1409 8447.9639 6145.7462 21431.8124 68971.3306 16887.7623 26709.7249 29230.7081 52030.9143 819269.3585 27955.3568 60231.7518 68220.7692 34072.0559 34072.0559 24527.1604 53009.5223 22082.8963 37795.9917 87084.1608 12627.3757 24574.0391 17712.2503 22043.6559 20983.3993 108897.0526 19411.1273 145156.3297 15018.7309 85201.1221 29819.8247 30937.434 595988.3754 74038464 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8148.351 8969.1517 8571.338 4394.4852 6687.4703 7886.6882 9463.3151 8026.2933 5241.2617 5497.6688 3313.8951 3313.8951 18624.8114 4227.0465 6482.6418 12752.7621 2860.8563 5918.7536 4689.0097 9854.8472 4566.4817 5726.6384 2428.2339 3168.4491 4188.3235 5237.4825 71383860 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5052.8051 16730.1187 10896.097 5593.5489 4753.6778 3494.4507 4278.6644 2195.7418 80494.0822 8123.065 17038.4854 8583.8872 4635.8703 4635.8703 3273.6212 9669.6501 3370.272 11288.4802 2454.8675 8682.2056 2779.8341 6151.4759 14043.0742 3903.1494 3293.5941 2863.5782 8565.8134 26986207 soxY Sulfur Sulfur Oxidation NA Pelodictyon phaeoclathratiforme superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon; 348120.9707 85771.3379 69319.9309 118228.6678 58725.8886 119540.5876 87030.6114 193209.0635 563091.8496 98378.5202 178113.8736 170939.044 3573601.7371 264189.0752 329421.9394 240627.3382 175160.2515 175160.2515 299275.958 223133.5557 81695.6491 613825.2182 606407.7732 196330.8909 338903.2321 112334.3258 146605.3628 163994.4295 296645.0045 132630.141 198256.1376 86097.4977 130980.2038 149170.5547 179707.2999 667168.568 319945535 nosz Nitrogen Denitrification NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 8396.8996 5239.0902 5406.6468 179412.406 5485.6532 4290.1947 13795.0526 7820.4785 8686.4816 202375.0107 13198.6367 10611.1171 41570.4991 5200.4876 5200.4876 7411.8832 15857.9902 8860.4018 5822.159 12553.2235 4605.1885 4001.2797 7372.5288 21686.1057 8910.6476 23263.6084 16927.0345 15362.8585 4762.4069 8648.6541 7277.2639 5158.701 11953.458 157804871 APS_AprB Sulfur adenylylsulfate reductase NA Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 30103.985 6738.2439 29693.4404 8483.0835 11896.2041 7521.1529 7907.1958 22169.7762 23927.8175 113907.3408 13835.1156 13820.034 13516.5195 37652.7864 37652.7864 7627.0031 20330.2246 25257.5122 10215.4511 15905.6506 9610.8868 9865.8776 18775.0047 20715.2876 7644.6764 28162.6585 17161.7671 16449.131 7664.6918 9586.8224 10712.5809 6576.2563 24791.529 126236097 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 239414.1045 41067.393 282679.3583 97800.9012 130065.1141 111546.4281 128039.4445 216997.4977 164070.6432 241515.3015 331312.0258 160927.216 8620876.8293 130823.3064 280808.7742 500853.0095 211326.1988 211326.1988 90049.4944 195763.9137 111078.756 371194.5495 233374.7752 862350.8984 250786.4304 111036.4467 152405.1579 195685.9109 260997.2729 194268.131 199464.9369 104309.2574 123921.5166 126648.3806 113282.479 182903.5931 315587869 ppx Phosphorus Polyphosphate degradation NA Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 42801.8478 10252.4726 23206.0794 31870.8464 56142.9294 12687.3297 8889.8025 203995.6303 6901.2239 16445.5645 35211.3415 17963.1659 947413.1249 31700.938 369893.1926 28453.7409 30818.2978 30818.2978 17197.8703 29070.537 21048.8843 13359.9188 149204.1976 28816.4337 8962.5463 15031.166 35670.7942 14634.1058 51274.5454 24946.4925 38485.0046 13848.0476 17035.6093 19319.4754 13347.5541 29827.0929 149145603 dmdA Sulfur DMSP degradation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 160231.433 79636.2095 53139.1921 64383.4695 43433.0989 48245.9664 53761.2622 44928.1516 33777.6192 66188.7442 75282.0284 78926.1268 7819266.1348 328033.7683 107133.9503 86935.0933 80944.1198 80944.1198 47673.6649 153316.2646 57966.9813 290799.9158 232021.472 103863.6731 113429.8173 42490.1006 70006.5545 77752.1567 129439.4025 68941.7297 146319.6719 46604.2653 61479.194 54282.2842 50824.5826 82763.0417 374429131 nosz Nitrogen Denitrification NA uncultured ammonia-oxidizing archaeon superkingdom:Archaea; 12135.4647 13377.0738 11556.8961 17077.5849 9220.0594 4561.9576 11127.1826 78786.4325 9425.0167 9990.2439 15542.8078 7735.8992 257798.5798 14022.5082 13181.6253 12694.286 10105.8556 10105.8556 10786.8527 17476.6309 15416.7166 23067.9567 15845.0545 18195.5819 7365.1544 9284.0333 17491.1987 7675.3103 28224.0316 18725.4637 23522.0208 8574.7216 10028.6406 11939.9466 10525.3952 22617.918 334115806 cysJ Sulfur Reduction NA Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 7302.5944 39045.0421 5379.9615 7904.3816 4524.5255 3686.4807 5113.4123 14294.6307 2770.4837 6977.0805 1838.9737 8120.0603 164455982 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8142.6126 17766.9444 3757.1296 5114.8992 5586.7176 4554.4915 172891.2362 7054.1819 8843.8644 6354.6264 5212.624 5212.624 2715.1571 8216.6631 7850.4539 4942.4408 7422.2827 4283.7959 2958.7939 6540.598 12520.1805 3685.3671 15597.6119 12811.52 13742.3807 3937.2626 10911.1462 5943.6294 2493.3482 83317036 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13045.2859 6686.2505 4408.001 6365.1551 9995.9679 8089.8565 10313.7886 18508.9182 7719.1331 302939.8661 34317.6032 16767.8517 8241.5592 7604.4053 7604.4053 8635.1188 17565.3224 11619.5509 10401.1232 25842.2176 13916.8328 7496.6011 13090.1479 17209.5635 12387.0446 27217.1921 26418.6899 54067.262 11944.0091 15067.6589 12456.3876 11208.794 9528.7083 356690911 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 44538.6273 15855.1657 1427325.5245 36380.3828 7990.6367 22220.7974 27945.5655 44704.4243 21390.3538 28940.6798 47046.2481 418252.6638 35551.3289 24929.7833 80396.3317 61221.1708 61221.1708 14384.2108 41807.5699 32350.3614 20872.0084 29479.6317 24646.9861 25450.6353 14907.9527 36702.8661 21945.8119 60592.8518 42456.464 71771.2961 15579.4882 18379.549 15970.0458 11931.5321 39045.404 379253942 xyla Carbon Cycling Carbon degradation Hemicellulose Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 29509.8539 10362.3196 4353.5314 15290.6698 22820.7654 22592.7748 4685.0061 6395.8088 18992.265 77760.2735 6849.8689 28535.8633 15119.7902 7785.164 7785.164 22462.1737 12026.3303 19356.9184 5784.9516 42333.2495 5786.1093 15154.9894 15588.5359 20857.6297 14595.3523 1024759.9926 6571.2754 13004.0895 62881.663 11480.136 10792.7197 23552.7054 8138.1231 398085617 bphF1 Organic Remediation Aromatics Polycyclic aromatics Variovorax sp. CF313 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 6187.2602 6558.7468 8361.8166 6560.7247 3938.3215 6898.1061 16845.0864 7364.3277 155224.5446 8839.2637 11710.9286 7554.3207 12256.2196 12256.2196 7384.5715 15729.1311 12463.7091 16450.8534 13275.1645 16770.1447 9176.165 6753.1832 15892.8407 5135.8402 30978.7228 16261.8583 13545.2777 5091.928 13310.0219 8705.8469 6447.428 13673.3083 156628075 fosx Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5263.5226 42855.1146 2293.4839 2303.2849 3855.4038 3730.9074 17042.0186 52340.9602 8613.9042 5576.2197 3027.2951 2069.6954 7983.2909 7010.0343 3536.345 154302189 cutinase Carbon Cycling Carbon degradation Cutin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 11010.7191 6661.8638 13438.1541 10107.6166 10158.343 9403.5712 5873.94 12557.301 9603.5438 4441.3523 261217.9074 15540.5144 11467.2588 6581.9872 5187.0913 5187.0913 8180.0808 13215.4766 10441.8629 12502.1253 11692.4288 17015.5316 6481.9339 5903.6009 16974.5504 5607.7604 24373.4233 13681.7408 20373.9887 6087.3773 7090.4422 8216.8865 5683.2272 21362.3069 373890813 mer Metal Homeostasis Mercury Detoxification Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 4215.2704 4991.224 2374.3768 12410.7026 4259.0428 2763.4529 2763.4529 5128.2994 5343.9864 5337.4919 27036.4436 5081.4056 4082.3313 5322.1757 110632102 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 40190.7974 30805.3529 77220.6434 125637.3567 11643.3698 13141.3518 48229.1697 29553.7207 17921.6171 27968.8833 38492.1786 716765.7044 36044.8237 45481.4713 38714.5467 37341.6816 37341.6816 25924.4502 61174.6746 38468.6501 67495.2447 51594.6919 57706.1044 67980.1438 20469.9071 54083.2302 39286.6053 84379.7526 98710.125 58775.2844 19896.5637 40150.4974 42655.0651 29611.5599 23991.577 152970670 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 455319.636 108518.4587 220777.1686 272280.2166 829236.2796 580588.5156 293734.7634 398532.6666 244252.6963 256545.979 488056.6621 387049.2893 9203501.4066 384714.8735 444294.9166 405679.3018 292757.36 292757.36 216467.5578 391936.3858 173681.6353 171117.7044 265503.8031 446890.1382 139415.1971 185053.0086 733969.8294 199022.9068 525635.4416 172600.7917 264549.4391 153420.1549 195142.3078 178712.4813 171698.2315 272624.7233 149142735 one_ring_12diox Organic Remediation Aromatics Other aromatics Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 19015.6453 17286.3817 42456.8307 2227.6739 4431.5087 6684.3447 12363.1594 8400.2651 6702.2918 134439.0016 27473.6844 9431.4484 6845.5992 6845.5992 19805.5698 25917.9211 8362.7988 134952.9792 29460.8057 6117.3841 13389.1607 6179.132 17605.8486 9585.7109 23049.0156 13711.3053 10369.2817 4636.1882 5795.6787 20757.5013 4519.2553 8573.2576 334104079 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 21100.0202 11337.6539 11181.1568 59529.9874 5044.9178 4641.5085 69011.6408 2787.9175 12810.2276 25647.1097 10029.613 317225.1234 9863.7935 26834.2748 11658.7361 8823.0797 8823.0797 9760.7996 17579.9176 13931.3181 11971.8706 13742.2848 13732.1005 13453.1862 7599.9883 20393.4907 9863.2107 29718.0491 16307.5498 17740.5371 7458.3551 15844.6641 17860.622 8486.3714 10983.5303 339638700 cda Carbon Cycling Carbon degradation Starch Lactobacillus pentosus IG1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 7318.6764 5843.1485 4625.5251 5165.5568 3806.7912 9083.6119 9306.3127 6564.8622 82196.2187 6866.5166 8301.6346 8379.298 3606.1163 3606.1163 7051.2619 16127.5828 7907.8687 6997.1053 9891.2327 7230.8996 12573.7717 5285.3361 9744.7113 10024.325 21326.7612 3875.15755 9654.3587 6531.2145 8783.244 6548.2441 5346.5046 660243.8006 67900830 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4945.5905 16408.3151 4795.0761 6792.3806 2540.2117 6958.8597 12733.7505 5414.579 2391.0441 4758.63 2399.3463 2399.3463 3218.3636 9390.0748 5785.0552 4903.4601 7133.3291 9468.9288 3209.8145 16329.5006 6976.1276 2637.172 10331.9558 6324.9607 7979.711 380738104 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 36020.3022 10713.6107 17989.325 89477.0054 49308.0261 14065.3466 111213.9246 19567.8043 19359.8623 24287.0239 25925.476 12015.309 693547.1472 66900.1047 28868.2219 30857.1013 36860.3779 36860.3779 34792.631 51072.1832 30891.2566 35157.8108 59270.2643 40705.5254 19272.0044 46883.2706 38607.1128 24578.0707 82325.257 33260.5985 38445.0532 23218.0817 26338.2504 55633.2456 22747.6612 35979.043 386853130 cysJ Sulfur Reduction NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 65900.9449 19970.8221 39437.334 28814.8359 199711.8733 49112.5417 12527.9239 54566.8411 10914.3588 43618.3016 63777.7916 41183.2102 1390820.2876 211902.1866 70805.3855 142744.7103 72857.3332 72857.3332 40604.5624 66922.5186 48555.0282 33482.2503 48523.7299 25412.7485 37280.4156 138918.2074 116687.7 71505.2786 179998.8124 83333.33 84398.8349 77993.6528 59829.9688 48766.9256 29021.3992 140871.5592 88930670 amyA Carbon Cycling Carbon degradation Starch Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 24455.7537 5879.537 24478.2762 22006.1388 5638.0077 14958.8518 32590.8126 61317.0133 48117.9647 30626.5937 115404.4485 390580.0795 126536.0752 34499.2653 44411.3347 90378.9927 90378.9927 49272.0062 119689.3434 29475.5922 15363.3526 26316.1092 8628.0167 12686.2238 44600.9747 38596.799 20574.4995 34157.5395 18991.2994 157525.8873 37413.6916 30837.6483 45588.4816 13681.8904 21493.9693 226834637 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 86633.351 10597.0692 196926.1498 48574.3576 53267.9361 41836.6507 43664.3371 43376.3773 62703.5012 30788.2018 68322.8443 42565.1404 5409497.8025 27617.8568 44366.0412 73023.6852 55717.2444 55717.2444 37349.5287 60217.5898 29353.9406 144053.4703 47151.457 51764.1019 23799.985 30921.7287 44853.5778 24862.8776 66920.8031 40204.1652 47188.5522 9608.2566 33601.0342 54618.926 17592.221 30157.0865 161160558 ppx Phosphorus Polyphosphate degradation NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 212919.7781 35839.711 184632.5993 31281.0486 75600.0005 31694.0191 17217.9144 70018.8096 23409.8357 20526.7309 34646.9497 40813.4741 538278.6442 23825.3075 53601.1399 165775.5869 39739.0456 39739.0456 20677.1783 53510.2855 31319.7888 24025.255 71006.1771 31839.71 14739.6627 22569.9947 38973.506 41110.565 66885.3643 39215.7274 53539.6029 41426.6274 45414.9991 23825.3531 17364.816 37058.4168 260596771 cda Carbon Cycling Carbon degradation Starch Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 7129.5856 13549.6104 8943.0796 17636.3505 6516.4415 3755.6386 4096.2495 5809.761 119320.6487 5097.8751 9680.3781 11772.7988 66373.1113 66373.1113 13209.4508 7781.9689 5242.6099 5938.9406 2900.0505 4956.0134 11806.605 12867.6842 13493.6763 9428.9625 11053.2448 3552.8667 4243.7919 3489.0473 2781.2964 402299138 atza Organic Remediation Herbicides related compound NA Bacillus alcalophilus ATCC 27647 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus alcalophilus; 7881.1196 22116.5465 14147.7878 6814.667 11190.6161 14292.623 7388.7142 3518.1777 115013.085 5754.2855 5361.6937 8487.6789 2886.8966 2886.8966 9476.4179 12007.2292 10530.8714 5027.502 8065.4642 7790.1389 4228.7935 6620.2183 8614.8254 5460.2329 28178.1818 12460.4695 13353.8131 5476.2498 6866.6483 6291.4201 5456.6817 9453.596 151361342 phytase Phosphorus Phytic acid hydrolysis NA Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 14419.3147 12613.9407 11583.2774 2679.288 139570.8896 2840.8263 8669.1792 4242.5625 20487.0389 248342.3755 7897.9377 19810.4397 3994.8314 6978.8153 6978.8153 14230.331 14001.7112 8565.7977 11025.7196 10446.5171 4644.339 18809.6002 26166.0402 6909.5269 8499.5638 63477.2091 7130.6579 8761.2558 15964.4938 7817.7424 25885.5949 6469.5657 5663.9977 163735387 vana Carbon Cycling Carbon degradation Vanillin/Lignin Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 11137.7148 325440.198 7788.2305 20750.8394 7179.1142 3598.7054 5652.7128 10086.5306 3045.8285 18442.9914 15287.0823 3248.1227 26032.0325 9796.5842 3805.0554 9537.7466 14272.8799 6558.4048 319793159 ppx Phosphorus Polyphosphate degradation NA Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 94002.2365 27157.1203 88341.1704 75736.8052 43784.3556 30375.8679 36867.9615 18380.4877 246961.9522 35464.1437 35925.275 1648498.2914 41725.9305 65553.4726 102905.6133 60802.3674 60802.3674 17323.4669 257459.7057 40216.7422 31193.1131 71513.3926 76537.6274 28785.5858 34739.7927 36630.8224 41050.4019 95139.0639 65572.7327 76859.3282 39220.6136 45117.0621 47285.0232 36947.0476 65777.6081 262031871 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 51577.8618 534881.999 15183.768 30157.5346 6456.4255 110146.4429 116265.6718 19593.9291 31581.1369 14284.1732 20849.5079 358810.0221 62987.7863 14719.9241 32295.6914 20268.8665 20268.8665 16328.0522 23310.2924 15328.9442 67720.0997 15639.3632 229118.496 15806.4301 11179.9492 38915.7655 19232.05 63456.6154 30178.1696 31280.0006 7872.127 38868.42 34994.1586 37283.4753 16841.4066 330468620 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 13502.9756 5616.5788 8573.1721 13889.9099 12920.7521 5890.4244 4834.5169 3300.66 8952.8148 9645.8967 10574.6851 180459.4682 12322.2498 14452.2291 17661.1227 6416.4595 6416.4595 15766.683 12960.0628 17325.7531 8993.562 58533.2184 9417.7459 6934.5095 7003.3979 19384.7964 8759.2713 17691.0335 15962.8705 15652.8071 6135.1457 8554.652 8776.8092 7729.5717 17004.0398 46110921 cutinase Carbon Cycling Carbon degradation Cutin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6395.2982 5338.2866 35492.3922 90569.6051 3586.1631 3063.6953 5814.8371 5569.5033 4872.1812 117992.8634 7601.5371 2621.2568 2621.2568 4846.5523 10415.643 8007.258 5805.8078 10949.3988 6366.6654 3452.9875 3293.0872 8993.3568 4389.6042 11167.924 8103.2218 13510.4163 2935.0963 6026.9086 8074.4655 2790.4912 9266.8754 289531761 glucoamylase Carbon Cycling Carbon degradation Starch Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 11799.8415 7253.6876 12327.5689 16559.7732 5466.4411 8062.0668 7870.4867 9856.6829 9932.8991 5348.2357 290572.5588 15060.8804 11702.0578 7986.0371 7840.7194 7840.7194 9496.1823 22752.1162 11293.4173 15150.7369 15076.4057 16863.8145 6172.8831 8400.1591 18204.8881 6181.4372 28407.6744 6743.5158 16986.2517 8434.8584 9179.1548 8150.707 7322.39 23319.5492 197707358 urec Nitrogen Ammonification NA Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 23898.6916 8004.1626 39280.7836 18307.1443 9715.7554 109712.8937 9043.0828 11379.1588 14381.3587 27225.1312 973377.4651 14896.9275 15989.7767 33686.3646 17533.9218 17533.9218 74929.6256 40913.8371 17748.0386 121239.7642 33426.9386 11561.8887 13561.4417 28693.3991 31394.0527 8795.8372 43772.6019 34212.6309 38623.4545 5444.1086 74628.5085 66426.0563 29560.7399 62428.4381 219722844 linc Organic Remediation Pesticides related compound NA Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 19330.1709 25663.8457 57900.8737 61616.1582 6339.4557 14316.3252 19123.4253 16171.03 21448.5722 51103.861 21115.3176 339610.3921 26429.2467 55840.2116 19954.8101 33586.123 33586.123 10572.806 26055.1286 34350.2138 32397.8986 45273.3262 21877.4117 12728.6149 37174.9022 28444.841 7812.6803 30401.2481 48935.2022 43259.5835 7763.3307 101369.5411 23947.2273 9434.1207 44874.3095 410154938 dehh109 Organic Remediation Chlorinated solvents NA Glaciecola mesophila KMM 241 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola mesophila; 12132.5699 10150.4553 7039.8485 15687.152 4871.0166 4154.6517 10429.376 23691.6052 13244.0875 8243.7256 233547.846 18784.4063 8899.9425 6787.2825 5983.2756 5983.2756 9594.474 15049.0781 6408.1154 15939.3861 16410.4759 6698.7021 11274.6226 5345.6705 18270.7422 4921.7664 15255.0412 19375.9931 11694.3004 6190.1279 19606.1929 5302.8171 7412.4839 11639.6343 288918409 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 68800.9985 160724.8051 30930.9079 14861.0922 16198.2205 43639.5396 35115.616 18901.2145 25097.9846 38975.3263 32741.3571 941921.8 35098.2514 45407.752 22667.8775 25528.303 25528.303 26974.4547 64308.2044 29770.4896 72157.3625 38947.2887 48918.0163 24335.2809 21947.0605 32979.3093 37214.7973 58991.868 22258.4038 42967.1748 20653.3501 21418.2992 26702.6151 18540.6533 49942.6575 255957243 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 240832.5786 33360.5987 55723.6716 512966.2811 47638.5354 52559.7462 622322.2565 133342.6464 102866.1487 126032.7122 143604.2682 979493.4792 180595.8913 203308.5129 618806.8066 124335.3506 124335.3506 138237.1195 132080.8258 174505.4215 84591.2164 137084.591 147673.1089 39917.6508 75396.4709 312152.2296 96450.648 604843.9351 171149.5947 174562.3448 144353.0118 252134.0599 91622.1736 154575.4663 64208.9709 392381586 exaa(moxf) Organic Remediation Chlorinated solvents NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 189922.9198 5630.7525 47158.4091 257066.9419 18457.1076 105219.7945 12231.2544 9059.2232 37760.2111 33675.582 100524.8223 193946.8266 23107.8477 19321.6967 28426.2188 47267.1975 47267.1975 14126.0956 38173.0041 16211.5222 91060.9646 35723.5089 11350.42 8258.9451 14733.6438 19658.1788 11055.4734 46115.1026 27108.1495 21969.8082 11558.6462 26950.3877 19332.4372 16550.8156 27961.7021 219996663 dsra Sulfur sulfite reduction NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 8474.965 17418.4069 6750.6373 6468.5648 5952.6417 4554.2762 3069.6242 5862.6001 7813.9798 3348.0335 205592.6846 5789.0239 6235.5819 7061.3385 4714.2396 4714.2396 4593.8181 8666.1996 6590.7095 7537.04 7898.5351 7577.117 3673.8155 3235.7531 8911.8889 3293.6209 10341.1973 6519.6962 3764.9122 4311.0112 5671.0419 3008.6708 10803.812 359423681 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 9533.244 38306.7178 5512.8893 10682.2194 16525.4542 3067.7226 10301.5239 12506.7813 6015.4427 8221.658 7838.8496 241169.7034 10231.136 7805.4468 9499.709 9499.709 10689.6635 20737.1486 6687.0814 11659.807 12953.0493 13062.1857 5487.8259 6224.3838 15488.8199 10696.9612 212791.9852 10319.6239 14560.9127 6993.1555 7036.2412 9885.0532 23687.0928 39996.8702 424046193 nfsb_2 Organic Remediation Aromatics Nitoaromatics Vibrio cholerae HENC-03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 43830.2267 16502.8328 77144.3424 33495.9087 54327.9474 19530.9291 726513.1694 53143.5494 18589.901 30664.5777 35186.1394 22555.9733 958318.4542 62045.7767 29948.5857 31154.2501 33075.2341 33075.2341 21082.1144 52023.5232 31789.8621 44326.879 133412.8973 54089.232 18004.8558 22707.5423 37615.7212 26408.5677 67716.0235 42599.1884 51777.1408 19995.0104 31377.7656 29702.5182 22210.765 51935.2889 146337807 ben_bcla virulence NA NA Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 99038.522 40508.3789 90660.2685 16677.9514 107796.2093 22433.1082 358586.0324 57398.9596 36887.0698 27658.8027 43147.9643 40925.8273 723618.2197 132600.5481 48290.9265 58151.5248 102705.7115 102705.7115 38383.695 97466.4452 42915.2782 30202.2781 40893.7941 36336.4718 43459.8141 115446.9384 72023.8154 71232.0541 176734.703 43620.8842 76137.5249 35669.684 31716.4697 41632.8008 70762.8295 56729.056 334103606 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 69627.4333 50932.8121 64769.5137 59261.521 530395.5905 30906.9839 46506.3877 68171.5346 57020.1313 84849.8643 106369.6277 106369.6277 75664.7409 124890.6131 158373.4659 109216.9747 124894119 terc Metal Homeostasis Tellurium Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 47734.3107 5661.8642 7496.9643 6217.2855 3829.7055 9643.8424 2492.2451 15950.5997 6292.6141 15955.893 158635.3139 17293.626 13456.6055 16111.2157 9468.2187 9468.2187 5751.5206 13944.9117 10116.4405 40866.333 17947.4065 10114.3503 38569.7502 6555.468 15181.1823 8023.0542 19088.7154 11111.5849 35194.4667 11613.3965 8620.0466 12879.5269 15317.4023 8807.8829 186474258 vgb Virulence Antibiotic resistance Degradation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5352.025 3472.1456 2653.6969 269325.7032 4578.3571 2574.6507 2574.6507 6826.2143 3955.5582 7568.5594 4119.9924 8445.7473 171678197 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 12544.9825 2415.7611 3012.1311 3012.1311 4207.9103 5440.0698 6353.8721 2996.447 109452498 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8374.6831 12201.7093 6960.1173 4074.3835 6313.3741 8319.7908 3150.5064 199380.2516 500564.3231 8057.5403 6620.05 4447.5186 4447.5186 3642.2423 6798.92 6732.1586 6920.2852 11167.0853 11245.6066 4731.5353 5099.0252 8673.5816 4969.7824 17328.3407 11679.9889 12398.9094 7051.3423 5595.8227 8221.1967 4109.556 5617.4748 93454938 APS_AprB Sulfur adenylylsulfate reductase NA delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 4797.9833 2958.2068 2921.133 54990.6927 5952.1139 3447.2717 4391.2829 2784.2972 9700.1148 5648.6064 5334.5582 2027.2724 3444.7765 377814995 chrr Metal Homeostasis Chromium Detoxification Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 18289.2959 10888.2111 456340.8463 15136.4428 7308.8904 5572.7098 8650.2628 7546.0493 13225.9973 13422.3141 9671.6837 5421.6783 237165.2248 20848.6926 10377.1225 7404.0371 6176.4088 6176.4088 12510.9885 21051.6646 12626.774 51291.7958 17096.6494 18959.2878 8049.7333 7358.9278 15628.9712 7126.1131 54021.8692 16784.1014 20796.6875 8245.8291 10071.5781 9754.1473 9017.3406 25449.5701 41326996 cysI Sulfur Other NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 23227.1185 629948.7127 20221.9751 57603.074 33748.8033 6876.7117 12020.7014 6059.356 10589.1013 12216.6966 13734.96 149256.0109 14115.0886 135398.7113 30467.9142 42297.4896 42297.4896 12910.0976 27462.042 17310.2424 25462.0782 20408.2999 31804.475 9073.9583 9502.9976 68969.7768 11286.2885 35523.2357 21307.6672 24758.5615 11968.1779 9537.4422 15026.6201 34624.3775 11575.6152 316981150 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 32232.1047 38911.9682 14925.9569 58876.7878 17664.2464 6538.6668 10219.9526 127222.8363 23802.6389 27438.5473 39558.9641 29087.1336 1744221.6626 16266.2287 34737.2826 49608.1546 16108.7011 16108.7011 24807.766 31954.2858 25953.2607 22930.3343 69665.9926 19422.1607 35129.714 14726.1278 51068.3965 92001.177 75055.3584 74993.156 55360.9965 13804.5407 19395.5369 30252.2208 38608.7079 27580.0757 323311141 cda Carbon Cycling Carbon degradation Starch Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 253738.7392 5367.2225 13020.0014 16391.5428 2931.2779 5443.5176 3860.2974 7441.0635 7049.1386 4644.4934 389541.1231 10009.3585 18417.6359 7307.3316 5579.6961 5579.6961 3773.6462 11666.6196 9255.5293 8390.3386 5674.9402 7948.2694 3413.9771 5036.5303 11082.7103 3519.92 9483.8098 7077.8012 11367.8313 5826.6296 4531.2613 8094.7668 3217.0579 6570.5788 116743229 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 270635.984 78542.8884 254491.9526 263245.5779 187803.2782 102267.5663 183380.7805 310819.1427 109699.6229 154589.7443 190073.5804 134512.3055 3857158.6831 149181.167 179279.2625 310928.6132 240144.1546 240144.1546 166448.9903 218554.9657 100993.672 201258.635 183050.964 208201.3367 126069.1807 140736.7646 232403.5266 120410.8497 604734.5583 210581.0666 157262.9153 184998.5761 197016.6852 148998.6264 107734.898 380684.8908 402567008 alkb Organic Remediation Other Hydrocarbons NA Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 474404.4568 22091.6709 58980.5662 62460.8109 64854.2124 20468.2531 47920.8094 44646.82 42747.0766 44231.9583 61477.8227 39745.4143 1411303.5122 136708.7293 69852.9232 71716.8845 55598.6742 55598.6742 38657.1903 83271.329 59751.3947 62749.9992 89145.4889 68162.677 43903.325 31996.2079 53188.4298 42423.6767 105291.4762 63819.3594 61666.8001 33886.3816 39839.0978 146601.1506 33560.8105 65183.2258 334133472 phytase Phosphorus Phytic acid hydrolysis NA Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11276.3392 5702.4932 4905.8598 8059.0359 15215.5544 5256.3717 8503.222 10633.9437 4961.5859 257726.9114 12163.0778 10176.7659 6523.6254 9768.5642 9768.5642 4546.9806 23501.1213 6171.3708 7619.9599 12024.3211 7305.8128 5532.5118 4312.6417 9153.4858 3583.6124 20063.7526 33597.0442 12526.5435 6052.1619 8385.0198 8578.6398 6388.411 9998.3935 381150549 urec Nitrogen Ammonification NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 5192.5122 5727.9161 5611.4047 12565.9406 34492.9664 7648.1446 14640.6806 5786.4488 29105.8813 4504.145 103420.1165 5299.6043 12705.1291 6427.7375 26269.4262 26269.4262 2904.4323 8502.2747 6636.1818 7649.6688 5279.6847 9547.1839 11016.1625 15494.7764 13008.6154 7787.1817 37781.6489 8530.1053 9612.172 10580.7882 10301.9593 12718.5132 6239.3196 7394.6303 385670374 atzb Organic Remediation Herbicides related compound NA Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 12008.6779 9197.0025 8388.0407 12145.7924 9193.9903 8209.3481 77202.1095 11885.7369 11358.0128 8101.5326 323923.2911 12655.1941 11710.2451 15782.7263 51244.0955 51244.0955 10213.5819 19435.9681 12375.6466 31315.6221 17590.5105 15155.0091 7313.6124 10943.7953 15861.1036 7832.9536 27108.9676 15701.7155 17435.5364 5843.9257 12138.9687 19240.9031 10454.1026 12801.9163 223470326 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4854.0912 5310.3877 16178.3066 6746.1077 5215.7165 11127.7537 5226.711 12183.5824 11480.0006 5099.4282 5152.1186 35246.5334 11545.2699 11545.2699 17429.7379 4733.2426 9195.966 9102.7925 5445.696 5714.8425 7979.0091 13752.7255 22816.0097 8422.5603 9634.3189 4730.9013 14765.8844 9126.267 6918.483 154159571 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10330.9215 5442.6933 7329.3856 10506.8069 14198.4438 4291.1825 10334.5145 8788.5301 7933.5988 9567.3465 8551.0931 190380.046 8960.7315 17823.8769 14544.366 14492.8663 14492.8663 7610.7908 20104.9662 18628.3793 14988.9831 13411.0598 20877.4495 4184.2779 14095.5138 25819.2714 6796.506 28325.9792 16113.8999 15650.8848 10398.9445 6372.2361 15009.1236 6120.122 7562.3748 310829862 ppx Phosphorus Polyphosphate degradation NA Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 4987.2452 4057.136 3818.4134 4355.1387 4361.6621 4361.6621 4399.3293 4995.8125 5445.3538 2811.9701 2386.8509 5932.9019 2102.9816 7930.4448 4059.7352 8322.3992 2821.756 3800.8179 2899.4648 5703.7806 85672174 mer Metal Homeostasis Mercury Detoxification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 4025.4759 5672.363 64144.8157 2427.8086 3589.9102 3546.2993 5957.2275 4525.3073 4792.0177 7145.3509 13324.1371 13324.1371 6009.6885 4649.2839 2739.0171 4946.606 3489.9746 12444.6009 8584.3763 9410.7694 2359.7072 3223.4258 4132.5168 4077.869 171914159 cysJ Sulfur Reduction NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 6996.958 43921.7441 9049.9654 13893.5055 10401.0828 2867.2247 82366.8484 4235.2474 4513.8289 3181.1832 3181.1832 7731.7912 6663.7323 2433.6544 5128.3049 6956.159 7360.6619 6262.5125 1894.7195 11153.8597 20353.5186 295977496 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 56574.9826 88103.019 175882.6643 64110.7203 157539.4799 43989.3587 26213.464 35016.1051 42845.7923 170020.9023 227625.2745 108702.1792 1129060.7797 163041.635 214073.0577 257040.4449 102443.339 102443.339 107303.457 98253.2525 91946.2066 128833.3297 88343.3973 66236.5077 63156.5467 82816.415 127290.7132 22736.7663 345544.7731 126584.812 94911.3994 42560.463 49149.1734 80873.789 67162.6395 51282.9887 374848605 narb Nitrogen Assimilatory N reduction NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 5584.5921 9063.4152 6863.3167 5012.3322 8261.0899 25219.4595 13561.8206 19195.6716 22715.4111 12948.7478 107283.0061 35125.1795 45054.5998 11046.4577 7344.0648 7344.0648 23732.1952 23456.7973 13181.4202 27884.8655 23836.5416 8375.5351 6909.1527 9550.3339 7079.8881 29617.9249 26380.3558 13683.5203 15923.2237 8702.9295 37348.2863 24990.733 55559.7312 10669.2264 255019605 soxY Sulfur Sulfur Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 11048.8791 8210.6533 18512.2679 12921.7223 4653.3559 2974.9377 9666.0358 3012.5574 5406.737 7837.6219 8305.9528 150586.3743 7335.7402 5224.9675 5112.0922 5112.0922 4181.1194 9681.9989 7305.0292 7213.6969 6218.0141 7933.5661 3750.2334 3764.7677 10153.7573 6523.9237 26940.3856 4253.702 11188.553 4337.5969 6700.451 7339.5429 4722.4844 24246.8852 253998612 fccab Sulfur Sulfide Oxidation NA Methylovorus sp. SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 10483.689 10294.3182 49977.6268 6031.0728 19875.787 5755.4568 5772.2984 12237.9847 3234.9073 163711.0104 10179.6513 7425.2112 5255.1626 3555.5006 3555.5006 5352.1314 16467.5049 10619.3839 14157.662 10269.4267 17620.9965 7465.6398 5210.7507 16410.1729 19645.9747 23182.505 11055.7549 15644.5315 5480.2387 7789.1664 8124.4584 4944.0459 14489.8266 357203825 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 8508.1938 11902.4516 5776.1548 14107.381 4445.2328 41458.5395 5180.8419 13689.179 4173.9969 142622.5351 139788.2453 7180.3647 7323.8797 10251.9483 4246.1541 4246.1541 30045.8914 8861.0916 4468.2391 216089.0417 6602.9246 6388.8454 3478.1153 7734.4838 2445.0245 8836.8791 5744.318 9324.1466 3594.0653 4775.2886 7065.7017 4634.6258 76162.92 224800913 xyla Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 4627.9989 5591.9913 42033.4737 25815.7229 6299.3732 4130.5825 5337.263 8825.3836 8825.3836 3157.1648 101549.3439 11091.8794 15142.7724 4909.3795 4363.7252 31824.4412 4796.3067 8876.2148 26499.2088 4487.7004 3483.636 4786.755 3068.2691 260776960 chitinase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 5903.3505 2191828.6997 547460.6286 22150.7854 5016.4458 3928.937 4731.3581 5238.7903 6254.7504 5576.3684 113331.3557 5031.6781 7409.7757 2969.2037 7835.7123 8679.7468 9365.1694 5066.1941 3094.8759 3575.9885 9489.0568 3753.3214 12837.2665 4895.1109 10504.9232 2875.1222 2833.5431 5145.5072 3999.7798 33040.4121 290583238 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13624.5034 10849.0479 6699.0606 11239.98 4521.7872 19571.6449 48340.3495 7729.0822 17187.7392 6435.6634 169486.2063 11947.2602 10728.1756 10187.499 7769.1998 7769.1998 7895.3342 14791.6703 11865.6084 11979.8546 34919.408 13056.2314 5820.645 6189.3185 16241.6232 5595.5218 21366.6975 17075.123 14138.6595 10822.2437 9001.5749 14686.2574 9009.0676 15596.7483 251790067 pme Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 6317.5646 5880.8172 5154.4465 6352.9543 5786.0116 5750.3789 3348.4487 4653.4091 6291.6348 5414.9709 5408.6926 4354.6174 4354.6174 7493.0005 11375.8925 10616.8887 10716.7635 9956.0482 22045.9953 5502.6071 5513.735 23999.6508 3204.8691 17153.2096 9406.2852 16667.6374 5382.0243 7166.598 6324.042 3833.4922 4584.9866 144429 xylanase Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 61016.5887 20663.2878 19176.8463 217820.6531 10409.0939 45962.8826 779233.0035 18927.4741 26307.4742 65496.8848 49925.0085 1371676.9962 31811.8824 51203.7155 62086.9487 79499.8616 79499.8616 59708.2835 110118.4815 34842.2922 27809.7052 229567.3836 63079.0491 98613.4926 34367.0645 59383.1083 37082.81 74790.4622 43374.658 51273.5495 72680.4004 102424.1864 90382.8905 40238.81 54152.0414 328529605 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 5847.4631 5203.7308 11427.1771 2503.7202 1946.2611 2880.5592 2040.2164 2040.2164 3294.1712 8206.8835 8328.0779 3694.7941 7036.6574 6582.6018 2471.5426 3003.1894 6336.9335 3917.0924 9378.5268 4002.888 7367.4325 2578.6562 3200.9729 6397.2214 70930934 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5063.3094 4242.0714 3674.7518 2906.8155 4180.467 4559.4188 104915.6848 4117.512 2096.2631 2096.2631 4193.779 7541.4051 5888.7911 4876.4405 5790.7158 7156.8017 3716.5195 3602.3559 8207.3685 2381.109 13068.0184 7383.7831 3576.2395 4339.6751 4726.2829 3896.5174 9295.5556 256036515 amyA Carbon Cycling Carbon degradation Starch Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 13261.0782 22065.8779 16728.6834 61262.0089 6675.3801 22808.3388 19659.5789 19132.1617 18906.1441 18652.4026 16661.3776 356342.1129 26701.614 304093.0812 1350361.2181 24152.8382 24152.8382 11789.3477 33063.1606 24040.635 473781.3803 17973.1633 15795.1572 11750.4789 12738.4161 18628.4231 12651.7821 63763.0408 22503.1359 28628.6951 15537.7175 13621.1879 11994.107 29363.2187 12993.7958 255502811 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28645.0608 5602.8986 3516.1836 6031.4488 3433.0017 7343.3671 13659.34 13565.2847 80425.3151 8033.5302 44919.1659 5935.0652 12888.3717 12888.3717 4598.766 129959.3315 7547.6039 23385.6523 14842.287 18271.6137 5055.9388 8437.739 7062.5851 22741.4535 10496.3057 38078.7002 14789.7622 30300.1173 16349.2469 102840.8439 21428.1148 91795187 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5981.1193 18203.4063 10160.5425 4199.0895 3274.7739 13013.4713 5252.8183 3155.4783 98257.3427 4432.7351 6087.3554 7481.5066 7983.7115 7983.7115 4112.9286 14532.8273 6618.303 26347.2296 3954.3247 14259.8013 3847.9007 26487.2949 16735.3986 13629.4621 3949.6667 7489.8796 5786.2841 254043480 xylanase Carbon Cycling Carbon degradation Hemicellulose Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 17427.9616 19497.1286 15270.3077 18425.933 9215.7924 12624.0745 102678.6434 47489.5099 13416.5514 16371.1587 15647.1663 372396.4037 14277.0786 25129.7451 14835.6974 12431.2559 12431.2559 17504.6247 25511.7218 14315.403 13842.1934 14603.175 14487.047 9793.712 29026.617 21548.9508 9745.4145 36703.7742 12343.3284 31464.5327 11824.7856 13403.2044 13975.105 10304.0451 23436.8192 357391804 chitinase Carbon Cycling Carbon degradation Chitin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 13347.2626 9399.8438 8825.3754 2939.4645 16627.793 6259.8024 2474.5428 2474.5428 4740.5825 2899.126 5996.4465 5451.8574 6200.2313 8943.8414 3399.7604 3538.4995 22092.7991 281403378 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 6303.7587 13958.0128 9167.6114 4956.1721 12390.4222 2475.7132 5698.1231 6610.5927 4485.8452 144625.0552 10114.9426 6846.5934 4827.7162 4827.7162 8049.1251 13291.8282 9792.2138 7577.4122 8485.7174 16770.6813 4568.9617 4090.3581 17589.2789 3667.9834 17963.6368 21352.4945 11833.8719 8138.0159 5194.1144 7022.8057 5618.4341 10946.6167 41396473 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7931.0317 50434.6711 4538.3012 7472.2318 3539.8543 130905.7391 11587.6663 4895.3273 2194.3327 2194.3327 2980.8671 9585.5846 5812.7473 6366.3532 5703.5798 2383.3589 9031.4904 5002.6937 11712.8623 7836.5311 8790.8059 4111.5046 4110.5081 3670.6088 12939.8374 8018.9081 161075735 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 8760.3974 5293.6527 9008.9549 8029.1647 31228.6442 73424.3087 5780.1121 17266.7092 106356.4953 7992.3506 8137.8022 5216.96 5216.96 47432.7566 37791.6923 7724.0373 14626.381 9492.2792 29172.1064 7224.8859 8604.4508 12605.6877 4825.6387 13966.6874 10524.0505 13508.6604 4014.4012 377780.0478 7556.0026 44531.671 15932.2666 296021402 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 67730.3847 39839.1432 109530.9699 43971.2348 20251.6001 71110.9983 35546.8939 40241.8308 51971.0909 290331.3866 50831.1498 946742.13 26187.3052 85758.8652 62065.3805 60768.5516 60768.5516 57074.6517 68568.6855 35683.3602 66906.4367 80754.1243 119352.9534 34559.7385 37037.7541 52497.1027 159085.0601 80495.0307 64465.5297 280048.9009 30099.6031 58329.2016 71414.0707 76998.9041 40124.2823 297159976 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 12264.529 16335.9498 10954.3597 19231.2636 22708.9152 28268.5768 7229.9704 18617.7211 5281.4354 10732.6462 13668.4202 10759.5536 364863.0015 18923.0833 21304.2796 21508.087 15192.9007 15192.9007 459957.4012 17776.1547 17780.0136 9995.541 29339.1172 31777.06 10845.9801 15451.756 32321.0356 8603.4144 48245.3779 18579.8768 29657.0605 11812.6649 10074.4464 384396.3193 7644.1027 12082.9683 30269533 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4146.3876 13634.9015 8287.8236 2119.398 8227.5624 94870.8973 4470.1698 4582.9428 5271.2292 13753.9966 7239.2029 10512.7034 12434.0863 13970.4561 2839.7096 10542.059 11611.8593 2365.0361 58566.2802 164456140 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6165.6259 19529.4468 9212.2883 9939.4195 2856.0828 2200.6661 4821.5511 5685.9159 6033.2752 123949.4014 13687.0184 10551.6336 23697.5307 4952.7872 4952.7872 6415.6768 8883.1098 6616.6874 4753.6218 14087.3166 2823.8947 6470.3367 14355.7276 7072.6742 70960.8959 12144.2696 17260.6918 3085.1398 62840.2863 9729.5666 2720.5564 6086.4766 167594197 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6781.2592 2425.5757 3538.1659 4870.7098 3434.3755 74069.4594 5614.3151 6913.7423 9735.1848 10881.784 5692.8798 6778.0236 5671.6422 4725.6794 10826.2567 12265.4789 6889.8216 2644.6555 14699.7864 7340.3784 8115.6847 2501.6877 4280.2076 5535.6727 3964.3419 5971.2808 227069423 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 19886.9664 12957.7759 21289.0922 10282.6182 5476.2102 16719.72 11330.3088 12137.1634 6792.5395 52023.8316 19022.655 109279.7045 31035.1457 14569.1372 9388.9604 9951.0308 9951.0308 7694.1931 18780.0051 8755.1552 23768.1897 15824.0909 20590.4777 6875.3653 8064.0486 16162.353 24210.6792 85366.2962 11751.2145 16710.9875 7880.5108 32199.7563 17095.1148 31826.7846 17928.3863 216824 nifh Nitrogen Nitrogen fixation NA Leptolyngbya boryana superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 23986.0348 11144.508 15110.9465 10395.3487 14008.6015 6520.1696 7749.3105 15694.7857 18284.6392 220203.9336 20237.3232 15041.6243 17259.1567 9957.9916 9957.9916 9583.189 14979.9593 13825.3337 18399.3572 51784.7941 12536.6113 5651.1093 9106.447 26194.2122 8449.2551 23949.2662 18385.4569 17043.5093 83411.8786 11653.1333 18257.2655 6663.7262 29298.6442 56785436 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 9599.2941 12080.7173 8120.5311 8584.0762 36917.5011 6839.8255 7757.5034 5818.4585 3743.0129 6070.202 7696.8136 11232.8885 252562.1781 11898.631 9785.4054 17291.771 18788.0737 18788.0737 4740.9036 13406.7281 18312.4277 8903.7499 7403.7484 23956.237 3281.1733 6904.0292 18254.9677 4540.4345 14837.2527 10114.501 14896.585 3789.4717 9886.8775 8257.4086 29851.4245 7976.5223 91697716 soxY Sulfur Sulfur Oxidation NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 14556.2092 6846.4017 7504.6637 2435.5676 16908.3195 7612.5758 5057.0388 5120.7081 32975.2465 116493.0704 5031.918 8793.6313 4674.903 77681.1898 77681.1898 5573.9239 9421.3083 5135.9592 4316.0939 7095.4705 8688.3748 7358.1887 5241.2014 8903.9979 4682.5174 20164.2126 24730.7854 10855.3448 3462.975 11394.473 17707.9676 6307.1195 9568.6893 219808343 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 31997.776 145254.4403 98311.846 37491.3923 78723.8773 4542.8982 5436.5898 8764.7198 97957.2085 7250.1982 9430.0134 4202.3117 2207.7887 2207.7887 8826.7993 15638.972 8038.216 15437.815 11387.2186 4115.0804 3400.1653 5222.7541 12484.1406 10500.6028 11126.2173 9832.6478 7923.0689 13594.5412 8506.649 14197.3736 5820.9554 10986.135 63256670 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 4028.3699 4623.5726 17989.2333 2580.6235 2983.9926 4351.7973 5249.0734 4917.7984 71325.461 4545.7808 5249.1961 2528.2228 2528.2228 3333.6194 6825.0849 4800.9229 3813.809 2236.4961 3014.4825 11685.3446 2321.9567 10241.3527 3942.7341 8714.0242 3235.6352 4091.8031 3623.0667 3001.0489 9435.4117 54027215 atzb Organic Remediation Herbicides related compound NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 60340.0848 42498.6497 27855.3325 116366.9143 31119.6226 52810.6047 38426.0348 43035.7798 34813.0943 28099.7632 111233.2469 912650.8505 179233.1111 165396.0062 105627.9366 53295.8537 53295.8537 30942.9058 80695.7493 55707.3846 26903.0384 60812.8545 46693.3921 33917.8795 109784.53 84172.1672 40908.8408 104631.1735 213798.1463 94315.874 43612.5393 42800.641 39785.8007 41325.6435 45259.8581 295669328 glucoamylase Carbon Cycling Carbon degradation Starch Paracoccidioides brasiliensis Pb01 NA 12162.2256 5984.0726 6319.6092 12937.2198 6111.3786 5759.8415 5049.5638 15115.2851 10663.5017 5109.5911 126021.875 10719.8223 10002.5303 6409.9752 4783.0128 4783.0128 15274.252 15408.3409 14152.7154 11042.3745 12256.4987 18720.292 5985.7261 6870.1832 17967.784 6068.8354 24770.3706 13079.4178 14207.48 5012.3501 15203.8042 7908.611 5158.952 21735.5412 13488100 phn Organic Remediation Herbicides related compound NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7591.1016 5477.8614 16687.3591 3569.3284 3261.3991 5448.1321 7492.8692 8617.0866 8617.0866 14008.4219 6834.3564 10917.3592 10363.7278 6021.2656 3166.3759 4191.7121 146409803 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19367.2362 30296.5691 13186.4812 23383.5408 6976.8692 7862.0031 26466.9858 34965.9616 16412.3751 34935.6453 41208.6944 299492.5481 37376.2428 51621.7701 47650.2678 36175.1095 36175.1095 21065.6736 57185.9811 24952.3322 19793.3364 74844.9324 81742.5177 15680.7245 21093.4981 32838.5071 47366.8515 67842.2971 97470.9463 38118.5361 15142.5908 23951.9093 35650.9901 18247.0339 27436.1232 300690710 cysI Sulfur Other NA Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 51938.3532 20548.6038 26404.1257 58833.1237 23658.5299 28228.4309 31857.1651 15074.6029 26695.6891 32466.4543 27415.5823 440849.344 42942.4184 42494.6284 21776.4641 20027.7832 20027.7832 20959.9203 36418.4542 30963.1033 29223.0776 28213.2643 27576.8117 22628.2643 20712.7101 53855.5606 20550.8778 78526.8287 38729.6576 33567.6523 34547.1906 19625.7174 28091.7248 18424.8214 44041.4801 262081611 ben_bcla virulence NA NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 5155.4437 6685.5513 7994.0587 11621.8465 5134.4317 14776.5483 7280.0541 4641.2723 5702.2105 12691.1579 12691.1579 2823.7652 7149.9943 6665.5981 3357.4283 8698.8855 8184.1724 2613.8711 7236.446 3480.0927 6184.36 6100.186 294801456 terc Metal Homeostasis Tellurium Detoxification Bacillus megaterium DSM 319 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 12252.7011 8477.8389 11150.3749 10573.0828 9584.6661 7613.9593 6812.1719 11173.232 14360.1218 6442.1414 265231.3819 15121.759 11593.0379 5808.1925 6425.5003 6425.5003 8325.5085 20902.0129 15135.2693 12188.4446 16017.6666 16575.4471 6341.1819 7756.1688 19189.4687 5647.654 23138.7798 12403.5645 16085.2274 6338.6393 8329.0283 9375.4991 7473.25 22092.704 292488620 amyA Carbon Cycling Carbon degradation Starch Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 10048.5049 11093.822 24827.7312 8310.3432 5060.2833 13120.111 9561.7745 5741.1309 8142.0617 9434.474 4757.7056 241155.6358 11760.2162 11587.7362 8554.3627 4411.3504 4411.3504 8456.7836 14251.4803 10099.0103 10130.2397 13474.7708 10862.8304 7004.3888 6525.108 13654.5375 9876.3952 19728.0199 8603.0958 16347.0445 5948.5744 5886.1493 7694.1152 6304.0238 16825.4198 254394015 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 3911.6516 7025.9993 7781.9129 2856.3611 2856.3611 9808.6735 10880.4734 8194.6517 2198.0948 253574730 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 17063.065 6755.023 5959.522 4097.832 5158.3256 12795.6148 58633.7481 15010.3754 181173.8125 8208.5294 12504.0086 24000.8743 24898.3564 24898.3564 9736.1535 30510.0801 24674.4558 39700.0011 21057.6842 7274.7295 9892.757 14062.4098 13764.9104 11364.2203 21519.7871 22713.8433 22783.2597 8041.089 42690.1625 28564.9663 55775.7666 33900.7981 56798495 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 19876.4901 299887881 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leuconostoc gasicomitatum LMG 18811 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gasicomitatum; 4629.5069 3148.9956 3200.402 8416.1859 4443.2751 5474.9705 4498.7148 116418.7341 5477.6672 6294.8969 5265.3937 1951.2294 1951.2294 4074.1392 16399.2532 5601.3248 5630.8548 6240.923 5917.723 3742.9973 13140.7338 7956.7736 10829.0544 4176.3974 11334.1506 2734.3811 5607.1686 4856.5282 30189.6392 9116.6605 261353063 glucoamylase Carbon Cycling Carbon degradation Starch Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 4114.2489 2665.3688 3589.5579 4816.9197 2557.192 5472.0591 3457.5612 3905.2347 2761.8474 5666.8819 5440.3837 1741.4117 2625.8254 2790.4097 6468.916 171677628 pec_Cdeg Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 19450.1267 10640.6348 7399.1237 43910.9758 7198.8001 22739.1471 3565.1006 13583.1685 14508.6958 14064.4854 284899.6734 44059.0706 20669.3987 24584.9472 41860.2767 41860.2767 11622.9161 41199.8112 33334.5197 10296.4634 18439.5664 17796.8011 9971.5393 13730.1248 36872.3548 8540.7941 286237.3436 24963.0917 35751.8179 9623.179 14083.5229 22172.8496 12228.9091 15211.2758 148557176 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7048.3356 1409296.2756 373437.3764 3139.8439 3148.885 6023.1497 47672.7402 3992.4544 79919.824 6055.9542 4212.2769 4530.7284 4530.7284 3688.1442 10932.8861 6041.4075 4502.1416 9817.9217 2829.5301 4008.042 8597.6698 4889.4179 15666.7171 7492.2132 7086.6435 3993.5154 9121.2752 6259.126 2916.0722 79086.0342 240139136 SoxV Sulfur Sulfur Oxidation NA Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 223343.1389 18260.1911 18573.7079 20141.3197 17890.2182 17723.0952 15450.1575 34684.7916 18830.3552 21002.7001 18262.1402 618078.6 22492.6069 20815.4991 26288.7471 15193.9801 15193.9801 17210.4094 42246.8394 21216.4008 24247.5915 60427.671 29392.9736 11145.2422 20288.4181 53695.3802 16297.9078 52555.1487 29605.7617 42620.5278 17543.8237 33895.8821 19438.0843 11855.1439 45436.0928 124267460 xylj Organic Remediation Aromatics BTEX and related aromatics Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 43212.5112 13385.5319 108999.1729 9476.2523 13318.2629 9197.595 128265.3937 10718.5062 10131.3202 12569.0747 21713.7256 16666.9824 424950.4461 20266.78 27497.9511 12760.5265 8935.6478 8935.6478 10914.3341 28161.8958 19659.9429 15630.1126 21593.5975 18738.9935 12562.9676 27717.6905 30921.7196 11007.0077 62364.2165 17603.6244 23286.3589 11232.5212 17302.8491 22560.7174 19100.7515 22859.9253 338708067 cysI Sulfur Other NA Zymomonas mobilis subsp. pomaceae ATCC 29192 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 5512.1272 10366.3025 2204.6817 7083.2282 66390.3051 4759.7529 12350.467 3019.2292 3019.2292 8429.2426 2072.9339 8527.4115 6800.4359 2710.7721 3541.3404 5079.8764 8107.5801 299766974 ara Carbon Cycling Carbon degradation Hemicellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5076.3463 2945.1266 2357.831 2658.6266 4719.2915 9335.4353 3362.3647 58415.9982 5480.3489 3724.9693 2542.4892 2542.4892 3548.4848 7803.1915 4256.3017 4260.6044 12260.9141 5775.9751 3073.1694 3842.5713 7189.6673 3289.8693 15541.3142 5334.8341 13560.2773 2335.96 5059.5195 16739.7844 4558.7996 38796.8191 372270119 catechol_b Organic Remediation Aromatics Other aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 7092.636 5180.0962 6647.4967 4314.6991 6160.8834 59794.6386 8605.6915 4846.9774 3206.6272 255134.9624 7524.8744 6218.8335 7136.1438 2844.7812 2844.7812 4582.2622 11803.7454 8941.075 7467.7644 6072.1095 10827.3731 5157.1216 3459.3451 9413.119 3488.2904 13436.1346 7494.5765 5013.9066 8362.1903 7023.997 7492.4706 9691.992 50837698 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus tubingensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 86277.7264 16016.0035 46011.0039 9371.5939 10745.1519 9739.1355 5673.9021 13524.7673 15626.9479 17704.2636 553309.6725 16826.769 26027.8572 32429.4977 22207.8271 22207.8271 18027.5791 22062.5206 13976.7734 19693.5649 29605.9558 20261.8751 20323.1152 20647.5671 25580.4117 17462.02 47533.5496 32409.8605 29224.7328 13589.2723 13652.5226 26188.4577 29224.0025 17664.4046 440136 dehh109 Organic Remediation Chlorinated solvents NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17776.0843 31971.8824 286256.4855 5642.3109 9653.6556 5563.7167 10007.9487 11464.7514 5183.8258 155817.2841 15446.0107 10684.3428 8331.754 5319.1342 5319.1342 10616.0971 18741.4068 12741.2218 19901.5852 14448.8961 42376.7466 7694.8924 8150.263 21437.4716 6250.7134 32545.2485 13481.0014 20083.1787 15771.6685 8224.1633 12455.3592 8031.2793 18300.7036 219741442 FBPase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 5709.1735 37357.0005 12357.9661 4095.6972 2964.6778 3409.1802 86369.944 3398.4477 73433.1812 6717.6886 21312.8506 5989.9698 5989.9698 5327.1155 10862.7132 4097.6554 4780.7361 6000.9959 3324.5419 4457.868 9337.7566 3362.7434 26302.4623 6123.3227 8334.1529 5028.9158 6087.8587 5255.7221 51567.9663 366165983 chitinase Carbon Cycling Carbon degradation Chitin Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 8646.1843 4827.0843 9046.3911 40165.7181 8150.6351 2986.3014 5004.2005 4794.5054 3696.6307 104221.9209 5186.3568 4203.5522 4735.8639 4735.8639 9853.7786 5845.7353 8333.378 13886.9345 9774.9038 6457.4604 9334.9727 8097.3566 3904.3253 16305.5056 6042.0448 12060.7694 3599.1452 5768.1425 4868.7843 17950.3068 7945.8572 356477509 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 224170.1611 30102.2643 49001.8934 558668.372 181563.7394 48877.9017 427345.9873 108890.7027 83736.8901 75932.867 78144.2433 70717.9931 4372370.6913 133834.268 155877.4183 189964.038 177590.5154 177590.5154 83291.3171 265327.7879 56344.5646 64012.6791 105789.1559 84596.6271 40044.2346 126570.0776 464678.8617 68903.3037 322316.9948 190986.5911 114499.2559 70558.1395 202191.5595 66039.0369 39999.0888 223330.1113 189198832 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 24974.3314 2341634.9915 41232.7388 352967.0885 4522.7164 49054.5828 3857.0346 10887.507 15127.3726 6704.5116 209772.3022 14649.8302 9269.6667 9497.751 4032.331 4032.331 66635.0276 147675.1682 15000.639 7272.3298 160328.678 8535.7456 17657.1988 18676.5784 10800.4557 13876.3153 49888.5047 44478.2688 24539.6408 16067.8275 17871.5335 34469.881 13072.406 11809.6656 387847139 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 4910.1095 4277.0759 2734.1997 4614.8792 4874.7676 7700.3938 72788.9454 5547.9732 3510.2188 4128.4418 4128.4418 2937.7229 9782.9627 4274.2685 4385.0712 6259.0533 5150.9849 3188.8556 2984.7275 5471.4956 5370.1663 10719.0931 4221.2201 8715.4036 2453.0065 4278.1407 4144.2318 3244.1495 7193.7043 373852972 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5243.9147 20420.1759 2620.4953 5206.309 4326.7777 2590.1183 70934.8702 3768.7693 6361.0143 17019.1936 5529.4456 5529.4456 5454.2075 6056.5762 4707.9865 7284.2099 2647.933 2664.7623 2318.0752 11549.1861 3706.6284 5454.7437 17044.0454 6268.1763 2089.4262 6312.3237 323364890 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 13699.3699 6028.0817 11350.7848 8696.8776 11713.0008 7164.7159 4938.3428 12917.9667 17174.1834 6761.7906 251005.3636 17545.1949 15012.4093 12167.2636 5787.5733 5787.5733 10326.4478 18400.7427 13983.8141 14604.3765 23615.3455 17684.0249 6431.4952 5943.5804 15603.3203 7663.3298 23911.1571 9011.296 21628.4878 5543.0785 10065.6134 9000.4661 6158.4825 13180.0388 255502889 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 57898.3801 66527.7111 26532.399 24334.7673 28511.794 7568.7841 9383.2232 9714.08 9125.2918 10085.5195 28449.3485 17778.1292 506914.9612 19489.3546 54804.3227 21164.704 54065.4152 54065.4152 137333.8472 65735.0563 21815.649 22074.8957 31525.6004 40804.9899 30729.7554 24120.0155 36861.6287 203452.4295 62326.6612 31598.9141 33899.4456 11363.6381 15030.8855 25760.7937 11252.2358 24440.142 374621430 FBPase Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 16613.8054 24224.1529 7811.6599 11206.804 20109.5899 5842.4191 9718.2123 6555.6933 6914.4158 9262.6487 26636.1871 14439.7485 237137.9012 238131.294 76754.9939 26611.1985 15202.3409 15202.3409 5413.9562 17343.7286 12645.2999 4462.9211 16332.9076 31930.2041 7583.3092 56369.5297 17300.1636 8689.0482 43991.8756 12002.2854 22362.4851 6132.0592 20264.8775 10752.4304 6659.4938 10907.6782 225024827 terc Metal Homeostasis Tellurium Detoxification Eikenella corrodens ATCC 23834 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Eikenella;species:Eikenella corrodens; 15628.4113 5275.6333 30943.5277 11412.5565 49136.0788 78412.8259 6148.6939 17200.2508 36798.1785 32805.581 433524.6773 16347.5253 23845.3695 44370.9866 27007.061 27007.061 17922.9352 55407.5995 11688.509 14693.8915 14159.984 19487.4386 33770.8052 12643.9868 14799.4028 33463.6032 23830.7958 20745.7205 21868.7054 14991.7524 18477.3483 12680.2724 12458.485 17130.0814 389666237 nbac Organic Remediation Aromatics Nitoaromatics Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 95717.8406 11871.4202 41320.4171 72044.9415 353486.5171 157291.0487 44733.8424 156432.4467 108721.4152 75606.7369 108211.4781 184448.1625 1603114.6918 153733.8494 150514.5427 147915.5284 187953.6295 187953.6295 99493.0856 143983.5633 118795.0258 203703.9321 251514.1803 282519.2546 210577.6907 90490.0848 152068.1948 312392.7484 230776.8532 122931.3935 149681.6205 45265.7302 64879.9541 127268.1871 64546.9785 130195.6719 259507923 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 83864.1858 9391.7088 24350.0152 31847.1544 9981.7482 11719.6596 13934.5481 298707.1434 14985.6727 41466.271 12039.961 395059.5207 25625.4033 27986.7172 18302.0302 15045.1257 15045.1257 19947.6431 49306.9419 17742.9496 22415.427 25719.397 20907.5298 12158.5097 108935.2458 17963.4655 32915.6254 38629.9351 64851.3409 23422.2531 6807.1051 14718.729 15692.5452 22431.5111 23017.5376 89333434 dmsa Organic Remediation Others NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6104.8597 13308.255 2316.8035 4560.255 3373.3797 7872.2916 2254.3129 10918.4049 5625.6641 238586988 phenol_oxidase Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 5529.7807 284374.8699 103372.5137 5465.7442 11784.338 6146.3094 4719.1328 4015.8334 4214.2594 22540.6854 10764.756 95611.2304 9574.8447 111838.6457 21921.8768 3718.1627 3718.1627 5881.3502 10000.8854 8147.3884 5836.031 7287.2903 7958.1853 3791.783 4873.1249 9166.5053 3766.0842 13714.505 10406.0065 9027.1022 5007.8312 9040.1606 13861.4588 7663.4313 8709.9643 363616393 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum sp. 4_3_54A2FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 54284.0253 13967.9971 15138.5394 14102.3389 23076.5887 37406.4369 28229.9436 36003.7071 47831.1341 47335.5324 553868.5063 29351.8486 33072.9352 68707.6546 40277.3319 40277.3319 32453.965 122210.9479 108412.1855 59791.4562 79747.7826 43656.7859 32800.0573 47994.1216 67232.9232 43028.2788 109635.5397 30262.5384 59331.8504 33759.08 47948.3511 50367.9963 41192.7748 51605.1259 182678027 urec Nitrogen Ammonification NA Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 51165.2824 10026.5485 6692.3671 4900.4299 10508.5141 9540.8274 9540.8274 3237.217 36083.9199 11408.3345 5381.508 5602.2155 11119.6323 7755.4127 6419.9338 3458.6078 7053.2944 323459982 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio desulfuricans ND132 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 76472.3051 51540.0334 53418.226 25935.743 8637.0832 16117.1913 102272.6391 28929.9856 37844.3545 85182.588 41856.412 867811.645 123100.9754 51172.7986 65630.0749 34307.1258 34307.1258 25991.7404 71090.5928 33370.2428 56563.2532 118171.1892 269439.5289 54176.8783 32520.5434 48842.5242 41984.8427 115076.5015 28226.1637 88758.3302 60086.4098 31231.7468 41333.9365 52302.6033 82793.6452 320096107 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 11670.7886 19885.9349 7054.5214 8942.6604 3261.8429 3747.661 2348.731 6420.1023 12631.5859 6433.9552 78513.7758 9874.9415 46433.9614 12686.7995 5366.9845 5366.9845 7355.9649 16907.358 10543.8851 25925.7791 13585.5946 11155.9299 4426.3758 6194.4872 15581.5077 3007.913 22603.8451 10233.041 15181.7251 5833.964 9027.6488 13705.596 3714.6955 13252.9886 148557084 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 22650.2746 16813.5446 18136.9441 265086.1848 9971.772 6664.5968 12000.8292 14275.8888 12822.8039 45727.0156 28252.6754 11469.4602 578177.0769 39347.0795 17838.6002 18257.235 20691.1331 20691.1331 20052.8645 37074.1027 17408.7506 28192.0551 36277.9209 19873.4301 29315.0176 12824.3696 31039.5254 26620.3111 41537.1525 25183.2125 40245.9896 10369.8426 18957.3522 31774.0143 8935.3476 26947.1805 71021981 p450aro Organic Remediation Aromatics polycyclic aromatics Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 31594.4391 12807.3698 26532.0151 16936.035 10659.6516 15666.3916 14059.8976 11088.3538 48969.6379 18496.4692 14149.1064 313963.2227 28748.2038 18017.6481 54756.1901 8261.3356 8261.3356 17419.1694 36947.2655 18914.6934 42020.6672 41650.1315 35708.056 14805.7283 15351.4462 20192.7599 16470.3666 144485.8078 20465.297 31111.4886 102930.3228 24074.7578 17109.2566 19607.2511 19789.0849 399231907 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4454.4204 28559.0692 9314.873 1908.1546 2625.1468 2314.0226 5257.0054 10757.249 4609.4073 108251.7298 8074.0912 13449.714 15934.8767 10104.7934 10104.7934 4757.3179 8447.8855 5157.6129 15491.6677 11332.8723 5938.426 4257.5255 3258.2586 6071.297 3608.4009 45277.4931 6472.8617 7848.4256 3413.0397 10459.8738 7455.2395 3034.3055 8805.4141 25027689 hbh Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 4899.3625 43376.0635 2504.1598 6595.2208 7105.1785 4889.4948 5048.3494 8169.1567 15301.1263 5508.7815 3130.4705 8640.069 5654.6199 42163.6052 6040.7758 3952.0173 2600.6012 120478.3206 148502260 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 19947.6226 10359.5009 14254.184 5040.8514 6181.8804 4497.9057 10167.4981 11499.8166 7607.665 100160.437 6864.7316 7732.0271 12611.6553 12611.6553 6049.645 18574.7198 13141.1599 5889.341 15765.3653 8523.3811 4602.0536 10706.4022 9411.8777 6799.8424 17794.1184 14478.8685 13307.8145 5448.8992 7549.2518 8405.5202 3743.5508 9680.864 119387816 ben_bcla virulence NA NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 12211.0942 21809.7559 6011.7879 5470.888 7836.0257 33565.8317 6563.1471 43367.2055 2540100.5124 55621.6128 10328.1164 12879.863 6153.135 6153.135 4514.553 11781.5648 6134.7946 6131.1568 7939.4137 60422.5762 5452.7271 9128.0266 12302.0688 3537.881 17713.8685 5784.9915 10739.2519 8719.6113 6379.2383 12374.6152 3287.5108 7140.7104 70930923 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 86393.4346 13898.6132 68578.977 54712.6356 26592.1713 8757.1062 31807.7478 66072.1986 39813.413 45708.2176 136990.7985 73921.5951 1804841.1341 109542.1974 66106.8964 55662.9158 92697.0507 92697.0507 52147.0912 125323.5004 62190.0645 83806.3576 156892.0043 229160.2342 56078.6994 75286.0624 99065.6502 69899.6507 163281.6428 131104.4534 123989.48 35340.6853 69917.8951 82095.3364 66794.7015 77547.6333 158108308 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 24089.5448 20791.3803 4587.2786 10112.5163 10091.0355 6752.9675 14065.4933 4884.3659 145882.1687 4806.2596 10265.7287 9101.9621 4212.5146 4212.5146 9784.7032 15586.8601 9312.9088 8088.1693 9462.217 8200.2538 13497.8968 7792.4872 13306.0866 8183.8346 29034.9626 7298.3945 25467.5367 9400.4895 15149.7245 23413.0733 9679.4582 12704.3047 91690603 phn Organic Remediation Herbicides related compound NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 20918.5521 9805.0904 10923.3166 10236.3562 317386.261 13220.2968 20140.2846 17765.0911 42390.4064 194756.345 915726.8204 12283.2835 32735.8008 22944.5471 22944.5471 14847.1062 25145.7925 15273.1668 26191.9211 24616.3439 10089.0819 6628.1511 11093.1832 27068.0522 20271.4005 44420.2523 27741.4963 34032.5071 10085.4732 27777.5402 16875.3518 8676.2383 118812.1147 297190384 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 147745.1979 231465.4639 37383.2169 108059.7001 66611.4903 20857.0174 46207.7499 105235.6452 176379.3202 71277.3012 83733.5353 60931.2206 1393319.8867 57893.4497 52295.9024 153963.3717 63401.2464 63401.2464 61273.191 93738.3751 54514.3841 161954.7857 562999.3172 87207.5863 62061.8625 55795.9067 133446.821 96303.1505 205563.1934 94497.4602 96896.1491 84795.4029 48693.6218 63180.7925 60812.3241 63193.4365 365292217 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9671.1449 4950.4231 19759.4897 11309.5225 3684.2624 6703.3913 14759.2011 10726.7328 13958.631 28804.5171 245573.714 8924.9336 8656.5464 45629.4753 13429.1542 13429.1542 28500.2409 9107.6395 8895.5396 4596.3686 4809.9341 42804.05 4284.75 11370.8541 10790.0771 3990.6544 22002.7633 13446.4929 16601.5117 6413.3207 18593.8831 7067.3975 2706.3877 42287.8154 505126 rubisco Carbon Cycling Carbon fixation Calvin cycle NA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 6837.833 3757.1395 4067.9546 4097.2807 4315.3671 3937.4804 76577396 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 63610.4748 18150.1266 35928.5215 42198.9569 39522.747 13602.3041 48330.8142 106496.867 21112.1607 31768.2151 155284.3909 333249.178 1003348.3916 69055.0932 83242.0591 100499.2182 37507.2875 37507.2875 29379.5711 85475.1867 48657.3435 84442.9982 196296.8015 54994.0539 40897.4337 41727.9322 52106.8288 75462.3143 115387.5856 54363.2336 66389.3258 43493.0978 33212.5153 43734.0586 52745.0344 66932.0941 323364696 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 3810.2057 2570.5315 4148.6734 7675.8394 3460.0171 76272.5224 4520.8811 3754.3594 2140.935 2140.935 3070.37 6547.9009 4229.5114 3749.8915 6228.0412 2385.9319 6089.4295 2560.8222 14134.0874 4895.7939 8749.8122 3902.8035 3425.5527 3941.7947 1954.0359 9122.998 302534534 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13382.102 7121.5578 15547.483 5361.8717 5365.1354 7890.504 16388.1635 10107.309 6924.1463 20290.7798 500787.8149 9528.5884 5850.9965 7252.9396 10729.3762 10729.3762 3439.2566 19129.0229 5790.0606 7042.2072 16380.4752 16411.5287 2504.9443 15098.6325 20072.0892 3688.4999 30157.884 10276.2903 12118.022 6009.0562 29314.3143 6182.2727 8954.0496 11304.6277 365337513 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 117417.6434 18020.8829 65317.1317 25713.0764 37560.6897 18830.0539 34745.216 154090.6294 72664.2967 45540.3729 57954.0532 64979.9897 671712.4455 81622.4467 90650.3887 124461.0573 102597.059 102597.059 57605.6917 87518.0172 38268.3172 36059.3947 88282.7399 43286.7542 33016.5352 69834.5385 65122.8059 65169.4834 167700.9604 108704.6056 79973.8438 44985.5964 65014.8883 107904.6238 117316.1846 113714.1189 260457718 urec Nitrogen Ammonification NA Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9027.7571 12165.0036 9706.6068 7971.2623 5092.953 5343.6016 2219.569 4439.5372 7194.87 8153.3345 126341.9979 25777.4499 9360.5157 9448.8352 24605.6079 24605.6079 3559.3732 10124.7683 6259.9584 9425.0006 598507.6396 5589.559 3655.0428 11247.3378 10567.6205 6326.9271 13031.4554 12201.6013 11929.1379 4453.1649 8375.1197 11438.8449 4335.5634 8963.6995 270298566 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 29877.0236 22788.1625 10371.4935 10105.813 17798.7014 13890.3019 9416.7684 9612.051 15438.4342 6776.5683 231708.3307 17644.186 16369.5121 11717.0001 6727.1796 6727.1796 9241.5663 25241.8203 23858.1173 14462.3362 26409.1984 31840.9611 12863.9712 8559.6175 18504.545 9640.9185 30730.9535 18770.2302 17005.6619 7723.0784 11257.7905 10684.8679 9344.8363 175586.9561 299766964 ara Carbon Cycling Carbon degradation Hemicellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5043.6589 4200.7357 4626.6339 1999.5807 1999.5807 9334.648 3533.4105 4399.7109 3965.4102 2831.76 6648.1045 3502.174 8966.5402 4767.74 5239.4893 3926.1983 3803.4502 3461.8133 2875.2857 18302.0547 170605620 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4424.4056 6626.4354 7372.9511 2184.6811 3049.1422 3169.4648 5814.179 34790.2089 70625.8221 6731.1214 3778.0029 6846.5839 2732.8837 6239.6196 9078.8974 2032.7214 3208.3485 2154.6911 353236869 glx Carbon Cycling Carbon degradation Lignin Piriformospora indica DSM 11827 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Sebacinales;family:Sebacinaceae;genus:Piriformospora;species:Piriformospora indica; 11988.4498 6760.2953 7271.8394 3264.9618 326414077 pcag Organic Remediation Aromatics Other aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 18373.5427 22745.8838 2878.7742 76666824 aps_apra Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7866.886 12000.4048 11862.5224 5166.3448 10339.187 17032.0188 3395.4229 5102.1725 8212.5835 4515.5777 118337.17 6825.0867 7958.4126 8707.9098 9337.915 9337.915 5094.8716 11155.6288 6401.7632 11268.9056 11927.7114 91425.9129 5219.9371 3847.9311 14823.8466 8095.5755 21158.1415 11273.7664 18452.2958 5392.9404 8761.6878 7228.2965 21385.7772 11474.4576 330982179 cysI Sulfur Other NA Pseudomonas syringae pv. aptata str. DSM 50252 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7577.2799 9794.0396 2195.4085 4919.4262 3157.0984 17351.8858 3109.2802 68495.4142 7563.7841 3899.0103 3899.0103 15900.738 15855.1156 4477.7686 6601.277 4717.213 7427.3157 14528.8681 6761.3218 5657.1335 28121.7227 3810.6681 19407.1582 6539.4281 6283.8092 77978717 amyA Carbon Cycling Carbon degradation Starch Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6555.3894 332592191 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 43218.5663 14864.6912 8288.7821 15108.803 5983.915 7873.28 8478.1493 9033.9153 12557.3425 32193.4597 24372.8576 8161.6256 14599.1835 16839.2434 55000.9759 11442.7834 11442.7834 13592.6074 65360.4449 18049.6396 12318.8718 37653.2869 14658.0394 10095.0991 21607.4434 41104.8699 13284.1237 33504.0455 22971.237 21078.2125 9373.0602 22636.0976 21971.5983 11240.9745 12729.3711 91976532 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 23536.7899 42046.8413 154282.8927 35850.7959 30068.5048 42714.3452 18168.5528 74065.848 11691.7833 19702.0452 36178.3084 75007.6566 705277.0405 42572.1301 42493.4983 104341.3638 137338.5904 137338.5904 472547.3083 33500.4674 37648.5234 389538.1594 24868.9983 28770.5085 169650.7323 24922.2451 76410.1554 219065.7508 96637.3587 111342.1868 65356.9973 101572.0883 21729.5791 21708.7059 13326.8093 44972.036 323707611 amyA Carbon Cycling Carbon degradation Starch Vulcanisaeta moutnovskia 768-28 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 14049.3573 11255.1771 15100.387 12740.9052 13015.7741 11211.2463 57604.3226 8752.4812 10636.4227 13300.47 9081.8684 250984.3896 14719.7901 29506.0027 12356.7422 11821.707 11821.707 14022.6332 26811.0489 13488.0488 11998.5021 16797.6709 16455.9432 6933.6525 9963.4534 19669.9391 59701.995 27646.7786 9683.6879 18368.4375 9223.7413 9127.1104 9850.0519 11668.3961 15034.9544 384083608 proO Organic Remediation Aromatics Other aromatics gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 15110.2954 6066.4373 12244.4027 6034.5139 8610.0817 4886.646 5710.7379 6225.8173 35697.5923 7157.1709 110462.7444 6764.4095 8801.9234 43594.8696 6952.0008 6952.0008 9531.0771 19567.354 8609.2088 16489.4463 18040.9253 6879.0741 7494.2652 7090.0336 14438.1952 3747.9905 23992.2072 21141.0212 15266.5176 12224.444 7021.9862 9424.8095 8734.2919 13092.5304 148553455 phytase Phosphorus Phytic acid hydrolysis NA Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 51897.2124 438575.0746 186929.7016 32685.706 15429.0433 28402.0823 29241.5486 82310.4607 27263.4347 41747.2563 22583.268 14686775.9664 46583.2627 64300.6406 29091.3086 46214.8841 46214.8841 25078.7976 64281.4099 30963.753 243680.9009 46871.1045 33073.3329 24315.0854 35913.065 41374.0412 18200.3985 79102.2474 23342.2703 42321.7832 24454.24 25419.558 46601.9777 35414.4485 31314.8916 29832204 nirb Nitrogen Assimilatory N reduction NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 49955.0454 33735.8516 114338.4392 13719.0257 90523.2298 33354.751 67279.3795 62330.7184 12965.5024 14945.6454 50143.0848 33770.0908 557874.8539 49873.8423 23437.6858 94721.0018 39594.3204 39594.3204 23587.1404 37263.6681 20946.7804 18683.2735 133165.0692 25151.8759 11969.8524 23557.4136 40780.1522 20890.4574 52799.8327 37603.4058 30772.6226 12892.1464 20631.4868 26703.6358 13215.29 42055.084 326631138 ara Carbon Cycling Carbon degradation Hemicellulose Chrysosporium lucknowense superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Chrysosporium; 13041.4478 4867.2963 6902.4787 7261.571 4872.9237 9094.0265 6984.0555 6449.3182 88698.6878 6421.6987 8344.4295 3957.089 5133.1432 5133.1432 3579.7612 12676.8751 5564.4373 59499.0397 9351.4173 4294.0792 5122.5734 23861.45 6105.6557 3783.7301 27618.8945 3691.0266 12235.635 2518.5002 5064.6798 6800.8391 3120.128 9039.9876 119637657 cysI Sulfur Other NA Pseudomonas mosselii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17395.0077 25414.2344 11177.39845 4650.0544 11561.3717 14185.5753 6027.9058 14071.0644 38622.4614 187185.4435 15169.4382 5512.1509 11383.4444 11383.4444 9511.7714 18737.5576 12136.0048 9561.1962 42218.20925 13473.1771 14926.1438 17234.76055 38741.0394 12031.7325 12491.8422 12164.62765 13127.0382 15862.1383 365968759 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3987.5534 4120.0911 15612.9193 10497.1569 11766.67 2146.9837 2146.9837 2784.76 4650.4208 6203.8555 44564.8015 9028.4312 4714.8552 223692161 linb Organic Remediation Pesticides related compound NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 4197.9649 10914.9861 4793.2399 3981.3317 5467.1195 8068.7245 157442.4649 6832.7264 5447.2071 4718.1316 73718.3203 73718.3203 11875.9846 20031.5319 4869.6201 3955.5316 2892.5074 20727.0088 6752.7326 2933.4993 3901.3537 6103.7862 2862.5521 5584.8343 2176.1661 21446.3847 302383523 poba Organic Remediation Aromatics Aromatic carboxylic acid Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 15948.7733 29881.7184 6751.1277 6562.5776 31310.0003 48041.018 12056.4922 5224.9008 15806.8734 13265.3625 132663.9109 13252.2171 20129.1672 65328.5929 16352.4025 16352.4025 22131.6086 21717.8078 9863.9013 16131.0272 28820.1708 10474.0701 8514.6171 15502.1673 22375.5716 14347.2559 52632.8681 19248.8861 14620.2165 10885.4475 22813.2229 27693.6584 7411.8247 35013.2343 302404463 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 29761.8436 21254.7483 5671.8694 16124.3118 57863.6337 7475.3253 6759.12805 3017.98995 6082.3077 6876.73225 271294.3735 6910.3721 6283.30785 5298.3738 12732.11925 4481.2629 7601.7231 19126.5504 4603.8604 8054.00475 16339.8063 13392.67965 12072.3255 7315.2969 11649.0136 8300.6063 11454.7804 6404.61215 355670276 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 31959.8127 10132.4779 33864.5799 6007.5414 22372.9973 7538.7517 20097.1941 21077.0665 43897.7496 17477.5164 81686.7756 28415.0437 931641.3598 15396.6973 32757.2097 36882.0555 45381.1833 45381.1833 12030.2864 47439.8312 28666.2657 31458.8064 295090.2153 25706.7532 20466.214 36922.7051 21947.2151 46107.3244 21331.462 25980.4099 35360.5482 22751.3768 35734.203 46993.8884 23591.1851 58368.4527 14325459 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma volcanium GSS1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma volcanium; 5013.3068 3891.1351 2061.6644 3923.3446 4531.848 5232.2578 69660.113 3990.2467 8438.9631 3364.2731 3364.2731 9433.5748 6301.2978 3734.3163 7209.7412 517207.7854 2356.9794 2937.8301 8516.8 5702.2887 7509.8964 2676.271 3603.5587 3280.5584 3319.3278 5854.8552 29606527 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 42090.4888 1048284.4424 11099.2793 21207.175 19522.1436 4550.1197 16504.4067 15618.1374 12580.9117 18950.5656 68499.2764 8856.9536 13761.0142 15777.5926 7290.6194 7290.6194 7635.8081 12854.8413 6865.1266 13146.995 18184.5127 9853.1722 14588.8334 8610.7552 55063.4284 26458.5553 9642.1191 2294.5452 15627.389 6717.6443 5791.8889 5022.6599 145322396 pchcf Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 34028.0863 25670.9181 626688.53 772021.8248 8663.8718 5409.5191 4550.5815 26838.0554 26199.0157 64510.98325 28141.97935 30069.5159 100984.8647 8108.04995 13269.71385 18327.6148 37743.786 37743.786 23050.3308 15131.6604 14994.5092 33183.64395 24390.04365 12587.3905 14438.90715 33231.08505 19512.57145 8817.65775 52471.78705 41716.62675 49853.57445 13066.05805 19422.47525 19019.6905 10862.43105 16775.0255 83316658 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37245.4341 50584.1225 50086.4537 16203.0925 13586.4848 13069.2691 5849.4009 14436.8115 14058.7236 14830.3079 223195.5849 21900.8335 18388.8633 12204.8391 22060.8482 22060.8482 42199.388 48614.7839 13811.1225 18746.8214 18834.6601 25840.8968 15488.997 23277.8965 35430.3654 15133.4097 54912.7504 24571.7903 57499.233 11523.5403 43746.7048 97328.5597 9021.2218 19577.1785 151302227 aps_apra Sulfur adenylylsulfate reductase NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 31390.3605 7636.3527 5606.2373 5942.7136 8636.161 2941.5571 2347.6493 8406.9447 11317.4774 9486.5531 68776.7535 8767.7311 3767.1007 14115.4105 39747.1696 39747.1696 7440.9491 14339.3263 5056.6218 15263.2158 8238.8463 11837.7409 9925.267 5102.927 9593.1811 35882.7131 6114.5852 9427.3332 4442.7264 8470.9174 12466.7435 7365.754 35029.1789 350545542 arylest Organic Remediation Aromatics Other aromatics Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 30144.339 20120.9048 5483.718 3078.9337 8189.1287 4045.4042 5799.2638 3409.7941 91893.2998 3710.7952 8091.9283 4678.2738 21694.8764 21694.8764 2776.0897 9116.708 4929.8979 9444.3746 7161.9038 73098.016 5968.1233 4508.7674 8068.2725 11168.285 11572.2743 8449.2535 27373.5563 6715.4314 6048.8764 5724.1695 3574.1183 7617.1521 4633565 nosz Nitrogen Denitrification NA uncultured bacterium ProI superkingdom:Bacteria; 50744.2643 55941.9349 1060295.4826 210252.9498 21489.0898 25951.8451 77491.7986 30170.7903 29616.0708 139775.7433 23791.2242 399967.8693 60789.2232 162458.8352 51411.7847 30611.397 30611.397 20744.2277 43830.6142 46485.2843 38092.0634 54750.0933 69971.4916 51076.4017 33610.5046 40036.9331 29209.8391 116178.5491 52851.8195 54453.8635 25325.1617 80067.853 33756.4523 33060.981 67748.5096 294343792 alkh Organic Remediation Other Hydrocarbons NA Salinibacter ruber M8 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 6844.1047 10453.722 2315.5134 4508.2655 3109.7702 54512.2324 5899.6305 2866.0484 2866.0484 8005.7105 5217.1664 19610.8134 5682.4402 8419.4688 2371.0892 3016.1803 6728.9271 2321.0629 9532.5151 4962.6665 8576.9908 2541.6648 6932.0588 3957.4723 2377.7255 7125.6096 52787891 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 8612.361 13724.5545 5888.2964 4054.8107 7089.6738 42950.7236 6374.0055 3269.63 12164.9351 9570.3818 10693.8853 260345.258 10821.5204 15666.2157 10411.8567 5692.6193 5692.6193 3448.5312 15981.0398 8894.3655 5051.663 25371.1082 8184.5006 7671.0331 7037.548 44957.2218 7641.3451 47181.1909 6890.3915 20055.2524 7731.8827 90511.0517 10905.7663 6758.5665 9514.2009 219861028 rgl Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 17745.2282 12619.1567 14249.4417 55557.493 37286.6446 11063.3008 10280.5036 12013.2318 8373.9963 16129.1667 15146.115 40790.8514 302342.034 21387.9177 17406.5666 13568.0692 13818.3018 13818.3018 8327.1789 32999.8715 17674.7706 25178.9993 13969.0811 17279.7597 9510.6942 13996.881 25873.2631 14030.087 44473.4718 22074.6843 20984.3734 8855.8547 14529.6766 15190.4748 6895.8796 35731.4895 154150648 rubisco Carbon Cycling Carbon fixation Calvin cycle Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 44824.5978 37388.5354 13619.7177 15857.7986 14576.5138 20470.2409 18199.3506 11272.6267 25520.9882 38194.8955 22335.1321 427645.8576 68555.3249 28706.3921 29694.3691 31547.9376 31547.9376 15019.7996 45929.0727 20051.9097 32274.7166 29886.7407 45264.3415 16484.8587 5748.0744 48947.5399 24811.9163 58108.5864 28142.2367 37163.6747 10998.6049 25887.9221 43721.5035 16659.7147 36758.0878 53758644 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 141740.3025 13780.965 71092.1511 1348702.2902 125590.0064 20205.809 92397.1567 523941.2298 822312.8405 317079.6403 442570.7419 126731.4057 9213253.0251 296497.4955 131518.0197 375538.1397 139736.4028 139736.4028 80597.9249 208412.7292 92011.8113 147602.3235 250352.804 179656.7887 112353.2442 151243.3642 446590.9279 144157.6205 275612.9662 220758.1558 141893.8641 162818.1 145094.5467 98505.0378 64763.3225 132332.0549 389864062 badh Organic Remediation Aromatics Other aromatics Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 300766.8026 39819.5786 64133.4108 164763.3169 63336.8745 41877.8512 125704.9478 99051.2931 94522.4379 106018.7172 272151.6923 84706.6985 1516571.7876 97166.3883 318490.505 103205.6299 70381.8832 70381.8832 77203.7639 132536.8427 63574.8775 117666.1735 91083.4261 835636.6805 53450.0707 94699.5414 90214.3596 89085.3818 223069.7693 147766.4779 106438.3838 161765.7331 121787.1593 114765.473 157520.1974 157675.145 93355950 norb Nitrogen Denitrification NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 14436.0126 10632.3419 6609.6485 13752.1837 13909.8435 16825.2573 12093.5546 9837.1233 12027.7227 34234.4608 11887.3772 239624.8528 16981.8354 30244.7698 13203.1382 8409.1311 8409.1311 10092.8942 31183.6917 14474.4264 12746.5362 46924.4643 18960.4532 16380.9502 13782.0469 19818.3693 18891.8009 43386.0892 18589.4956 39122.1929 12171.686 13336.9988 14713.5785 14219.0631 19496.2843 83701120 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4369.048 2991.8396 91436.1743 4921.1004 5265.9058 4343.6625 4374.5503 2021.992 3097.7502 67542033 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5382.2332 5499.4968 4849.9866 4923.4715 70464.7463 6081.8756 6762.4628 5156.7323 9761.194 6039.4828 5533.1526 8188.9749 27446.0988 4052.7987 3767.9917 7547.8343 2153.6936 16655.8101 9304.3765 8428.3895 3734.3069 6431.9713 4851.4633 2993.2371 33743.0893 57335474 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29421.0426 17573.9746 22085.2908 19101.6445 25535.5056 11800.5776 68987.3305 30921.1137 21512.7933 13763.0329 9952.1233 335055.34 21205.0275 13513.5476 16212.272 9692.8678 9692.8678 13685.1659 23801.8212 16650.6595 18936.8433 20253.8636 23028.3522 92641.5308 19250.4769 21814.9381 7811.1384 28145.8917 13112.3134 28106.4191 11162.0669 14866.3723 19549.9796 8702.6116 21593.1052 432000847 nosz Nitrogen Denitrification NA Anoxybacillus flavithermus TNO-09.006 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 6870.187 291579991 cysJ Sulfur Reduction NA Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 5175.5401 2453.4545 3060.814 5109.6018 5732.8758 98331.5187 4488.1212 4684.9868 4132.6367 8281.3356 4348.1381 3923.4243 5691.2924 2681.1191 3089.424 6528.0879 9420.7381 6024.5886 19558.4422 1954.6996 3407.1644 3977.5035 2383.5681 7258.7489 29125954 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 5013.1937 24699.905 4839.4073 11292.1196 6472.2593 11256.5268 2222.7838 3365.6766 103091.3031 4841.1743 3388.3823 3388.3823 9553.5024 2923.2168 4879.8236 15996.1236 2144.2161 5346.758 6314.8634 4935.9403 227338689 gdh Nitrogen Ammonification NA Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4142.6639 16095.9881 3547.8656 7948.3773 12453.6762 4653.4157 66182.455 3262.868 4593.6134 2238.8385 2238.8385 5746.003 4456.4287 4188.3287 2371.9944 5413.6715 2119.897 1844.9398 338732190 ppx Phosphorus Polyphosphate degradation NA Simkania negevensis Z superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 3985.6869 15913.6739 6326.8717 9552.8045 9491.6841 3133.6707 5786.1308 6836.1605 2916.9591 36608.2238 3085.5739 169110.0347 5765.6891 9853.8406 27371.8518 10212.5902 10212.5902 3663.5507 5456.0021 3823.4804 6200.9303 10037.6415 5369.1802 10001.0723 2238.036 3045.101 5166.1933 6284.6869 148838659 pula Carbon Cycling Carbon degradation Starch Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 18703.1541 4420.7945 11087.8796 8048.4694 27205.7941 28953.349 12803.5023 24551.4889 11245.8012 75026.7483 72912.2433 18264.0112 25773.1381 9774.3052 9774.3052 5778.8507 22285.9431 4573.726 11204.2075 32761.5439 9726.7999 3772.7741 8176.6319 20111.4551 5265.5157 34233.1935 11054.2462 14966.6248 3442.5833 29274.3391 8696.703 55080.6116 5963.4099 351684109 arsm Metal Homeostasis Arsenic Detoxification Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 6986.0355 20052.6636 6024.9574 13928.5628 5964.6799 7879.7419 11438.434 16878.1872 9454.7624 341621.6622 10218.4493 16184.0408 23460.2638 13243.2423 13243.2423 5055.5309 28676.9773 9775.9352 29738.6247 20773.9241 7658.8893 6180.1254 7376.7255 16801.756 20395.7594 31328.4106 10038.8826 14077.3357 7759.96 8842.5431 12494.3141 10244.0438 10776.4454 70930926 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23243.3289 10452.756 6605.1972 4442.4789 12193.1963 24096.4996 27750.4075 11370.6655 25412.9239 286137.7843 9125.5673 37346.0605 39701.0815 10358.2903 10358.2903 14051.3789 25127.6566 48676.9215 34361.8327 31420.2839 23459.1956 8438.0582 12879.2643 17281.8641 11677.4802 27107.2927 19890.2677 18703.4473 12370.5252 13091.6315 63997.8521 51144.837 28341.5306 354954744 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 13868.6648 118613.249 57675.2372 8221.9256 2640.3088 6019.2121 3686.2391 4576.5146 8280.5658 4027.1819 138470.4965 5673.2268 30846.9178 5786.6686 6565.8358 6565.8358 4337.5913 11716.7861 7931.4831 6884.9366 8989.7143 3836.4975 8698.3712 14910.3332 11471.2622 22078.7201 17182.1121 39598.4826 6601.8839 5718.2506 74523.5516 26654.2018 11750.0177 260415887 nirb Nitrogen Assimilatory N reduction NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 6067.3427 11455.3107 2556.1165 2583.5859 3002.771 4513.2086 4942.033 5946.2031 12613.541 12613.541 3404.9071 7884.6401 5525.9306 3085.636 3972.3914 8186.1099 15571.5447 3375.4511 6040.2154 5063.8279 4597.0374 2472.914 371720261 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 6663.1108 4163.7425 30189.5748 3670.5914 4524.4736 2688.3799 5332.9021 7024.5889 7776.2179 137343.9862 6905.7078 7635.0466 18342.4118 4883.4558 4883.4558 3674.2751 21099.076 7905.9963 7620.2269 6033.6358 5912.4511 2878.9876 6800.9465 11589.1186 3795.3851 43008.0837 8259.5218 10482.5432 4241.0328 4003.6875 5931.8677 3555.6031 7486.0741 302890999 rgl Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 10475.1556 5509.3879 11283.2201 16974.9217 8675.6789 5546.4582 9342.0922 34964.0558 21094.6395 91869.0119 10794.1747 15237.3739 26395.2336 6430.1033 6430.1033 24627.9004 21140.0541 7133.4901 162120.6119 13905.9429 7118.0155 14011.3442 14113.0319 15195.6792 16859.5499 26947.8977 192043.2768 10600.3964 8725.9142 11008.8958 7232.3743 5143.0469 16394.2665 229819788 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Beutenbergia cavernae DSM 12333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Beutenbergiaceae;genus:Beutenbergia;species:Beutenbergia cavernae; 305194.5598 15198.9857 47629.8418 42544.8743 34838.5291 9837.1403 60268.9411 344150.436 115510.0946 103646.6983 71812.9397 119120.0434 1781770.2542 138734.0812 168413.3086 376233.4326 100693.5355 100693.5355 428360.3903 466509.1522 145637.6033 855535.1106 180004.893 169435.4333 98051.8509 64471.0975 77557.9362 73433.727 229201.0106 125156.9676 99602.3707 74524.9796 89156.0657 79853.3412 286380.2959 121663.8761 85823677 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5701.8524 9202.4868 10162.0421 3959.0679 3800.83 3800.83 5766.0815 2465.1665 4145.2035 4123.4152 334125390 cysJ Sulfur Reduction NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 242140.5888 35101.0146 213173.3241 228725.2323 268827.3171 246731.201 133801.8566 233535.608 93664.5878 279522.5791 213925.7428 248779.6893 12086881.1337 271603.8735 187230.2306 269696.2459 201633.6566 201633.6566 288347.2342 237394.5271 175219.7946 190351.2065 334197.7246 165904.6837 149851.0105 144913.3045 171962.7392 138641.9798 597969.592 257919.7848 202127.8631 98382.7942 192627.1693 168332.4912 210923.5685 204761.0332 291072253 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 17494.1876 4726.8669 2125.1872 3076.7842 2782.6563 3697.1361 12175.5985 2432.7359 10647.9768 7043.2532 8765.3973 2121.316 4533.8516 7635.603 2734.6253 6531.7862 2289.5657 3717.5722 7397.8462 4084.4174 5108.6757 223984910 dsra Sulfur sulfite reduction NA Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 22322.1143 16777.6818 12541.2937 28469.3119 11880.3489 111212.8533 15445.5228 7198.3512 11431.4811 13131.3616 6174.1739 196019.4429 11913.8353 17460.4735 15099.2257 10686.6659 10686.6659 6445.8745 18172.2092 10942.8496 13670.9233 42913.2613 19160.3527 5979.0155 6579.9185 17412.8752 7500.2643 36474.3449 13861.0235 17167.9968 12171.3151 8326.6546 6424.9119 8030.8578 17083.5451 339627074 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 10824.1562 447251.5824 29646.0199 15038.5917 12254.5644 35870.6313 5629.8555 10499.9218 14088.8576 8024.5973 276437.0492 16547.5266 12964.6163 10291.6069 10946.2797 10946.2797 15933.2734 25159.9785 14251.4982 15270.9105 24408.028 15335.5439 9921.7769 8439.7333 15243.4237 12479.5343 25374.456 21243.2069 25875.612 9038.8227 16098.4899 18153.8807 7967.3438 16239.2481 340841393 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 7192.4132 8127.8691 4462.3338 2322.2528 211583958 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5143.3111 10795.1114 13688.2494 5649.6234 2725.1609 4411.2505 3036.5171 3830.1285 3615.8969 54436.6 7708.0899 14894.5541 18881.2739 3472.7737 3472.7737 3596.9546 15132.3835 6594.0094 4701.389 4851.878 8372.0037 3450.6795 3030.2799 8226.7703 2952.7962 13965.3641 10728.154 13598.2616 2988.0732 4505.586 3631.3329 3028.5404 5627.1223 69937812 arsc Metal Homeostasis Arsenic Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 57012.2946 14873.5451 27269.3046 25710.1844 27675.0376 18568.0706 20471.4003 38370.3774 163133.6445 37729.2707 47572.6147 38037.337 578208.5905 38079.6429 89055.8866 70692.6364 20198.5587 20198.5587 100605.4246 58539.6351 119756.1511 40641.4206 51642.3127 36938.041 44806.6447 71171.9768 55027.1318 39581.2655 105377.2938 47285.6509 72695.662 27115.1859 31933.6369 32821.1465 46458.6864 62563.8291 393758866 arsc Metal Homeostasis Arsenic Detoxification Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 24702.0886 44026.8477 6805.6841 20419.7384 18623.221 7433.5954 23672.9238 20739.0936 51061.2076 15579.0385 18436.4966 17665.9601 1237887.4424 19051.1473 26776.6755 21813.6576 6510.895 6510.895 79543.3178 33560.4749 19495.2397 17424.9487 17380.7459 29516.7665 11047.5068 22177.7341 67397.3358 21280.3413 43827.3116 51527.2197 51720.9278 14278.493 20364.9676 20682.5734 16225.2547 29706.5684 219993762 cda Carbon Cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 23085.2733 5874.8303 12901.814 23119.278 5990.6283 6722.0891 8151.5321 7578.2288 13681.8254 25178.7489 8656.2077 178201.5971 12504.1715 13692.0136 58868.0216 9578.5968 9578.5968 7839.1033 18055.5817 17285.5995 14316.9475 11158.3575 14796.0412 7353.5368 10352.649 17923.9418 10881.5561 27001.6186 22112.6655 25233.52 6654.0625 21640.3098 32234.3732 9384.2432 67638.7232 302199761 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 19330.0124 6812.0011 10925.4079 10927.1704 4900.0659 9904.4901 6776.5023 5939.2538 9648.7332 20432.0344 6241.0216 278986.4165 15683.0797 15314.4677 8511.2842 5704.1889 5704.1889 7561.8026 26261.9795 13311.3317 14824.7791 20125.6963 10186.5298 5585.3789 7893.7816 13201.6985 11904.2553 25613.7802 12886.1127 18945.4149 6753.0768 8816.4762 8990.7559 6676.4099 16548.5777 389666050 B_lactamase_A Virulence Antibiotic resistance Degradation Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 42589.225 8519.2812 68505.4286 10613.2055 8417.0229 2744.6677 8451.3139 14213.0647 22017.368 138604.8411 8816.5939 7688.1884 9791.4083 33657.2538 33657.2538 27917.3704 19389.9435 7198.4865 9833.52 14157.7016 7910.5598 10780.1361 6236.6676 9693.2933 10537.8374 25133.4994 47532.7821 12631.7504 3131.0043 8223.6385 11810.14 4085.2951 5637.5765 145242042 bph Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 55189.7869 15771.1714 8596.1686 3415.7715 5431.9838 18398.1481 3506.2991 131030.1295 5999.4785 11653.531 5639.5642 12439.5315 12439.5315 4231.6439 6849.854 11643.0691 5776.7137 4572.8148 5082.6033 4695.6328 4837.3859 10034.8892 2693.5649 10238.3243 8481.4037 12761.0095 3882.613 7210.3178 6528.9882 2653.744 409934644 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus bataviensis LMG 21833 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus bataviensis; 4564.371 14866.6166 14653.7914 3227.4213 3551.7704 12440.8 5675.5623 1854.8062 1854.8062 5862.2778 10114.3657 3821.771 2459.4284 9477.2467 3919.9244 2955.7198 356641273 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 38824.7906 27290.1437 31634.3503 24584.4814 14974.2109 8693.1951 8941.2694 22685.4121 11846.2964 12277.904 16519.114 23283.7162 256442.2998 24479.0916 37029.4593 15634.2917 24756.7014 24756.7014 18761.1583 100577.7032 29177.0355 50047.6603 28140.1939 45701.0362 28939.9517 16667.8906 22994.0049 22678.0058 80508.2407 32353.143 65712.1651 23084.817 29960.3997 66820.8524 59277.0417 25681.7399 154245081 catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 196052.1675 20402.348 34373.7231 138517.7564 29375.2921 13360.8037 72739.1789 62760.9311 25340.2763 31484.427 46290.2859 23650.4778 675112.438 47977.4254 39601.1735 25993.192 26872.5801 26872.5801 71972.4677 91389.6894 74940.9336 32886.7335 95498.8729 48854.2695 21162.5485 37657.3884 55162.0264 55365.662 135271.8025 76309.7545 49191.9412 25621.1398 89240.3235 25761.357 24827.7427 51680.6427 409395438 quinoline Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. Chol1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14580.4835 13605.831 9561.7447 1433556.8939 18665.6769 7579.6737 5523.6419 12629.401 27089.3323 13558.4186 316781.536 12824.1183 55354.4311 123334.813 11805.671 11805.671 11302.6997 20710.673 10910.6385 17756.0613 15784.5174 11300.463 15800.8142 19344.367 22949.365 24284.0495 49633.0998 18638.8213 133741.1769 8674.1322 15805.8422 24688.7143 13329.889 29427.3519 114543923 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 644319.9045 65342.7314 262563.55 791204.0139 3093045.2519 252662.5889 473282.6031 468691.7215 338287.6409 404032.9987 407086.8216 395791.6228 14537680.5819 833726.1336 527664.5878 653955.2927 469912.777 469912.777 464975.6793 421451.1705 256678.134 351260.3941 570692.5105 544756.9807 291495.6694 235569.8272 546267.9829 269028.414 950466.4331 684731.4583 437885.3657 223060.7985 285456.5846 330891.3135 167031.3824 823112.4408 110647724 atza Organic Remediation Herbicides related compound NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 49529.1545 12749.4623 49488.064 237275.5662 67254.2751 37214.106 40887.3955 149931.4164 13324.868 30178.5741 72244.5709 62938.6274 940269.5174 84458.068 168321.1885 863168.6728 98150.1921 98150.1921 25181.1451 102332.59 32558.1358 342590.1417 25390.9705 23542.5453 11653.2374 27078.0513 52840.3216 23826.8772 71868.7578 49075.5681 77862.0873 42188.3426 29071.4144 24340.3699 11845.4742 22829.1197 325857347 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola CRIS 18C-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 10911.4588 8383.1574 11472.9745 14348.0891 9122.6036 2914.3553 5755.138 2490.5684 5941.1514 13639.4095 7344.9701 98389.7742 6725.7424 30089.3258 7271.5756 21497.5369 21497.5369 2953.9003 10632.139 9930.9699 10476.9443 5632.203 6999.247 3373.8683 5676.2379 6779.9418 3321.4699 14107.19 4379.3041 10646.8966 4135.5719 7678.6178 4583.7018 5196.821 7800.8582 385670045 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 26311.2196 29930.4873 12297.0078 214413.4402 7746.8912 12779.6773 18590.0786 88883.7069 14206.5249 11920.1325 16040.6478 23198.4017 287590.4069 61338.0661 27123.4047 15377.8871 37674.1965 37674.1965 30707.2713 66700.7624 14254.4343 22644.4119 122213.6658 19115.0844 32967.8072 13146.5554 42380.9797 30193.8671 34643.1626 12959.1604 36856.9167 39141.7661 12175.2703 12905.4654 44396.766 15195.7925 340523761 ppx Phosphorus Polyphosphate degradation NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 17057.578 7646.588 8163.5813 5415.8365 5236.5734 12089.8854 3012.8545 62960.3401 5981.5988 5535.8836 5535.8836 4117.2906 17708.9507 11732.0398 5814.4587 5477.8844 4471.9633 16310.2046 12583.0134 5821.6402 6991.9195 2277.5119 3729.6904 5205.3152 7537.3735 13061.1917 260604261 Sir Sulfur sulfite reduction NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 5022.0658 4724.2111 3000.5678 2587.3211 5240.4326 4157.7541 120252.6882 7914.2466 3946.1623 4198.2982 3902.7384 3902.7384 3942.3096 6846.7845 5887.9811 6211.9977 7333.6156 6485.6229 2291.1072 3071.8361 8181.5436 1970.2918 11380.8419 4879.8703 6885.2496 2232.3634 4829.9358 4266.5762 2556.4443 8669.796 295647331 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 37968.2549 23367.7361 12139.2281 26542.932 7152.8564 7480.5759 15104.6548 54246.4313 11418.2021 31824.5983 20010.6441 223083.8491 14302.3538 45482.9556 65340.5013 18473 18473 24225.9189 40541.9511 23459.3802 19204.1158 40038.7694 44241.5447 12495.6376 29982.9179 27799.419 33605.7826 60804.1581 51959.8257 42832.8341 12666.6628 27233.3902 33191.6993 14356.3095 47521.6643 333456269 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 5326.1457 6772.7868 4007.5971 8272.1361 3465.8213 2877.3945 8423.4849 7420.405 7622.2828 107993.539 9879.977 6699.9195 7323.1399 4117.3198 4117.3198 5606.3195 34876.531 6054.216 9248.3736 8878.2213 13479.7397 4698.5503 4616.0201 8118.9762 36614.9876 15601.2109 6419.6293 9218.3138 15281.3882 7428.0799 10203.9671 3783.1077 19369.7897 255036845 chitinase Carbon Cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 5737.7034 5698.0286 2354.1874 3640.8972 8491.4531 51782.6574 4223.3841 5398.3479 2275.6156 2275.6156 4007.3001 6113.7393 3341.8892 7847.0663 4099.4354 3317.3906 2349.005 5323.8285 7665.3369 3425.914 6975.5706 1733.8865 3083.9841 3765.3852 2314.9182 5901.2679 415256 mauab Organic Remediation Herbicides related compound NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 95268.9324 43198.9615 65821.1089 34827.1315 27138.2255 97757.5356 57233.6646 45063.2651 69154.679 102402.3846 32891.3824 896903.9739 136522.6098 74843.3671 86262.0467 55068.2793 55068.2793 33707.2122 76635.8725 61989.0659 118539.3434 203904.2225 67031.8518 35416.0703 45827.7042 52474.7738 56416.5479 172745.1809 150365.4754 78940.76 47429.705 88156.3534 53754.8093 46877.3055 115835.1608 76097012 amyA Carbon Cycling Carbon degradation Starch uncultured soil bacterium superkingdom:Bacteria; 21492.8303 9426.3417 32233.2143 11626.6175 18872.3418 14637.3932 3235.6522 3246.0609 30761.5696 61194.757 104196.0135 15022.0879 24008.8043 6925.8567 6470.8723 6470.8723 5720.1201 86096.7935 6995.3627 6486.298 16241.5193 9715.393 9404.476 44334.4853 13735.241 13489.5817 27601.046 31558.5539 9885.5875 7597.5034 19911.8055 15741.0485 64535.3848 11060.0941 238760486 ppk Phosphorus Polyphosphate synthesis NA Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 8051.1057 4643.0333 8265.5695 2290.9056 5266.2067 2202.9482 6792.2481 5489.4885 2707.3328 208634.5769 6945.9588 3997.1511 5771.6366 6576.177 6576.177 3149.4777 12475.4653 5544.7942 4497.6128 9707.7427 3224.5044 8644.4391 3587.516 15120.2209 9530.1904 10389.4842 3472.5113 5861.0001 6093.9156 8625.0881 11162.9588 78187837 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 6364.2142 19480.6707 5595.72 26746.4221 42277.0042 2096.1672 3430.2057 7253.7507 3161.7218 6830.4985 32560.3149 7262.7222 7262.7222 4406.4908 12889.587 10495.2484 5843.2881 8103.9212 5540.8225 5923.75 3506.5745 13710.7444 3452.2422 13057.5387 21129.81 5563.1719 3595.8131 7311.9368 21377.638 3884.5479 7003.7247 389573891 terc Metal Homeostasis Tellurium Detoxification Bacillus aerophilus KACC 16563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7112.8923 14739.4667 6208.5604 6272.5422 6400.5266 6616.0036 7537.8793 3414.4856 141218.0635 8694.9396 9964.7248 6181.3293 3203.6176 3203.6176 5230.3701 10698.9899 7770.3492 7207.875 8729.3655 10816.5134 4033.5076 3310.8444 13026.4621 4121.2872 17118.5005 11163.0498 11775.6198 4084.9308 4922.0191 5546.9246 3754.2842 11155.5559 78093536 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 138097.5385 238074.0224 106685.2949 99329.3951 1007620.234 72204.6505 81925.7756 221781.9064 180610.117 89126.4043 134534.5646 71062.9822 1951171.2448 129451.6241 227288.8169 245318.4913 120643.4085 120643.4085 93040.4407 335366.6918 119235.7123 311986.8013 111149.997 108695.6551 121287.4201 83835.6405 174469.0329 125183.2482 309082.3909 173669.981 157336.4912 171463.8195 86966.4003 146046.3649 73725.1143 164029.735 55378686 amyA Carbon Cycling Carbon degradation Starch Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 14112.6023 9949.1326 6530.4795 3412.2878 2989.9865 2983.7256 8201.9741 7152.0459 161513.6847 3489.1273 9283.6253 12101.0143 2724.9947 2724.9947 3049.3228 10997.4354 4343.8003 9316.7105 6288.5397 7829.7296 3062.3842 3345.7682 5641.2602 3205.1608 17573.0263 5203.2806 5404.5375 3268.1462 3965.2081 4735.5482 3650.5724 398038460 tfda Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 24571.7345 20391.1943 19036.7349 26940.3542 8910.7223 24386.6821 14330.145 27856.2024 25926.5574 24315.3008 25396.8386 514198.4796 29199.8968 29533.0207 32728.6178 14225.2324 14225.2324 23500.5515 34963.4397 20716.8345 28825.295 39319.4053 33931.1278 13755.8404 29241.8392 31575.5374 21999.885 50315.9866 20571.6604 31739.6745 18096.8649 17288.0036 61208.6212 23948.1773 42799.4495 367034295 phenol_oxidase Carbon Cycling Carbon degradation Lignin Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 8240.7481 7009.6245 13150.1829 3381.9514 6747.0606 8322.8095 16902.5169 7773.7774 57482.9563 8535.0258 5392.1229 7924.5325 3404.3743 3404.3743 3305.8565 16732.0807 7414.4722 5749.3223 14673.1683 5174.7081 2610.3875 5641.5773 8557.8767 3776.9893 26013.206 15251.8035 13014.8729 4178.5798 5354.1605 6569.5443 8182.62 5423.2317 111020052 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 24298.4995 16310.4254 26944.623 24832.7963 15976.2706 11503.8029 9850.8986 16280.2198 10294.8129 21236.5317 23786.9709 15504.1399 372858.5408 27899.2666 28539.5735 17736.0793 9640.6661 9640.6661 11210.2635 38239.9737 15610.506 20561.007 17128.907 40322.4866 11114.0953 11056.4112 223309.5381 8023.8133 32771.9536 11241.4865 23511.8103 9129.346 11737.3533 14205.7457 9934.2263 21460.3711 120595003 xlnd Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 10972.4503 4416.871 15386.3335 4165.1087 57538.058 3431.6036 4099.8202 5841.2839 4002.9398 4002.9398 5857.1717 13677.9501 5988.2275 2811.3794 6089.6417 19580.0944 2269.3659 2560.5691 5350.9634 208605087 hao Nitrogen Nitrification NA Nitrosomonas oligotropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 5842.131 9367.9144 3954.60305 4230.6472 5149.7053 4052.1841 213286.8606 3982.42075 5869.0604 3387.98525 3387.98525 7411.25625 5580.94965 4411.7988 7761.9762 4958.65345 5997.67215 3455.1796 8886.25015 8049.04935 7362.88375 4457.4903 4650.6096 5072.3181 3971.42055 92361.55425 341599879 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8782.2554 5739.9571 8980.9756 2027.3078 5305.5937 5543.9079 59669.5583 12399.8832 3782.4083 9023.9247 30979.2395 30979.2395 6376.8167 5413.6325 4763.2164 6070.8656 2668.3195 3909.8278 5636.5876 2140.3417 2849.7836 3848.3618 15246.5998 402212570 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida S11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 29547.5154 31327.6096 72107.6548 52436.0573 24358.1035 11638.4788 20593.1827 17434.401 18573.8761 34739.9172 317396.9863 58091.2222 21137.7963 16215.8951 22167.6189 22167.6189 30805.4256 32558.4927 9071.7052 21341.9841 28011.0296 11395.6682 21545.1639 15832.9457 13413.4862 16287.4273 37438.7055 15179.7941 28419.4069 11778.1441 17072.0795 25871.7207 12285.1779 18467.1351 399159564 amie Organic Remediation Aromatics Other aromatics Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 8366.0606 6092.8113 5095.8618 3574.3385 2786.682 4702.7507 5372.509 2498.6676 128262.8934 5894.2405 5410.9829 3109.0672 3109.0672 2882.276 9838.8204 6022.5236 5658.3752 5278.7661 9768.7191 2929.8605 2568.3804 10187.8722 4262.3032 15637.6936 8015.9416 10001.6248 3644.3317 4346.3496 4962.9906 3624.3886 5953.6668 219670117 dsra Sulfur sulfite reduction NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5963.3978 12183.8757 1726.6186 12621.2961 6675.6125 3864.0634 7497.071 5016.9762 6730.3947 24317.6954 24317.6954 4345.5917 13699.9111 4328.1452 26846.9719 21867.5473 5289.5714 2439.1775 3759.415 19849.5078 3278.1352 12563.4328 9616.2413 8537.9174 65875.4254 5650.6407 3116018 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5143.2231 82701570 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 8924.9977 3995.4436 5122.0793 3933.5987 108326.8595 4448.5148 4673.7743 3481.7509 3481.7509 13063.39 5603.7913 8235.4113 7219.595 3397.7764 2925.0578 8053.1155 3669.3641 14727.4756 15260.7874 6448.9705 2509.324 4180.3968 3570.3943 6619.1729 327331188 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium acnes HL097PA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7893.5085 7954.3797 11351.1669 4949.3126 20919.1686 5633.0347 10240.4596 7428.0082 13318.938 240064.6298 7917.563 7608.476 25708.8377 5587.9306 5587.9306 5262.9878 20390.8447 7781.9551 47612.2191 18899.5702 5568.9752 6695.3473 9763.2741 12092.3256 4902.9821 38808.1826 10642.0137 12793.6697 108720.215 6867.737 11772.0289 3564.7655 7123.0154 343400498 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 37175.282 24721.4556 8285.4908 61298.7212 9208.7117 17516.5046 4785.3307 7918.7924 14381.2041 33996.8485 162248.5576 16867.2983 47322.4052 23970.7759 25477.9072 25477.9072 126045.1891 18661.2248 11510.7235 33586.0419 17691.2938 8044.0178 21344.2727 28895.6661 19703.5897 42369.8182 57164.2733 28029.3418 23843.4886 47131.0896 26829.5783 25979.4322 8141.9687 75916.8703 62512300 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21340.4023 8879.2503 16901.406 25535.6584 6334.2491 3121.4647 15299.6172 6213.9718 5455.6863 173593.8348 17800.8806 28204.8868 4576.41 7092.3792 7092.3792 4115.7084 11977.8437 6795.1212 4683.0971 32870.5401 26557.5877 8386.7194 6264.0199 9712.2164 5793.421 18616.0765 5758.407 9139.0603 5509.7135 9199.0408 9267.9001 9001.5251 82951.8454 145282559 xamo Organic Remediation Other Hydrocarbons NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 46365.3332 19657.5173 9142.2218 30704.8359 44129.9851 27985.2861 57868.9797 113899.8559 21351.3757 36827.3563 69723.9871 825874.8742 24368.2155 79486.2836 84685.8933 23513.3054 23513.3054 36616.0693 64939.004 24378.3479 30414.2709 54452.2752 33483.2676 115393.8519 59866.412 36206.4603 22805.6701 47771.1504 32020.3245 52110.3606 22252.0121 52287.6754 38455.9771 21999.8496 20141.6544 343179969 cellobiase Carbon Cycling Carbon degradation Cellulose Lactococcus garvieae ATCC 49156 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus garvieae; 5210.6933 23209.482 4934.7474 3952.7199 8165.288 7255.6292 8359.7488 3525.0827 312180.8016 11844.7415 10059.7898 14819.3441 6269.1179 6269.1179 12585.2166 39525.7368 18272.7618 7136.8729 19536.0917 2785.3727 9295.5834 42467.5658 7559.4152 31255.5789 6790.0696 19879.0511 7700.7138 13149.151 10772.5146 4735.1271 33432.6706 121700579 rgl Carbon Cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 121773.4024 309843.355 1381533.1361 26005.3513 19344.5013 63605.5042 37628.3058 14207.448 71147.5597 62911.8785 32501.6349 733257.1855 36478.5579 76194.8269 34870.9302 29081.6688 29081.6688 12691.3481 31895.6591 38730.877 36795.9683 74585.6332 32778.2116 20438.5832 35123.2382 37039.3175 18924.9148 109873.0764 23159.8478 37815.2717 56496.682 29480.6228 25791.5435 16186.7694 28083.9315 300518926 pec_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium occitanis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 5878.9067 15096.3294 2159.1602 2262.4851 6229.9926 69807.278 6589.0382 92655.8817 8219.2345 3276.2761 3276.2761 8841.0735 8155.428 1948.2609 4702.7935 6224.9964 4118.9435 10991.3232 4419.297 4532.837 4197.4215 3079.3895 344210295 phn Organic Remediation Herbicides related compound NA Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 4890.5348 10803.5135 3496.3392 11334.6415 3007.327 3750.8548 5021.8804 2493.1525 4163.8012 3498.9939 7748.608 13279.4875 4948.9762 8237.7373 2147.9174 8081.1997 2803.7828 8718.4341 14148.9687 8088.9217 3610.2926 6333.1945 4966.8635 2492.6814 392964100 phn Organic Remediation Herbicides related compound NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 5950.9793 2827.249 5532.0979 6899.0372 4561.8721 4342.3585 4342.3585 4135.0327 3408.2874 20602.6055 5525.6216 10308.0334 4222.9949 2955.1951 14069.7496 373942956 PRK Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 4348.4268 5333.5392 9045.6908 2760.1049 6636.5454 3290.4979 1738.6554 3465.8133 2190.5264 110285819 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 4336.9694 5530.3429 3110.8932 4970.1272 2641.9367 3448.3502 3450.014 6871.2528 4258.92 5102.3622 6891.7919 4194.019 3325.1862 5362.1377 2133.7542 8650.0499 6384.7102 2415.6356 3927.7562 3796.777 8482.6835 10306.0505 225684506 ara Carbon Cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 10281.3245 10366.7017 11295.7578 16084.3258 5904.4285 8845.2217 6281.6098 5473.1559 7529.8139 11586.4756 7041.122 450967.5439 11519.1363 12263.7041 6473.4449 8826.1827 8826.1827 7367.9962 25063.9863 11610.8003 13664.6317 17927.8174 12028.9609 5233.0377 9634.6131 17585.7319 5609.5339 24751.705 28675.5447 17139.207 7038.9705 12243.6611 20818.4966 6528.474 12526.7652 296924571 mer Metal Homeostasis Mercury Detoxification Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 19803.0327 11612.6042 29113.8543 13313.4316 16096.5178 4158.0845 15043.4477 7591.766 13130.4379 14242.8787 9622.0382 542474.8174 12181.0123 7009.151 23530.9736 6296.8545 6296.8545 11714.037 21448.0827 11021.9753 7057.3123 26102.9141 49472.6162 5358.1635 24307.5974 12870.9855 12549.0319 21705.3311 9123.211 17005.9937 5613.944 8599.6402 9832.9136 6889.7482 8092.8946 393170856 linb Organic Remediation Pesticides related compound NA Rhizobium leguminosarum bv. viciae WSM1455 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5827.8697 5114.5377 8406.118 2856.2926 6075.3161 4482.0659 14593.5332 2995.3202 63248.5035 8375.481 2904.2801 2904.2801 9159.9479 4202.8399 2316.8192 3097.9765 5689.7562 8073.1558 28302.1461 37905.4413 2224.9418 5049.8246 2740.5505 6068.461 310943384 amyA Carbon Cycling Carbon degradation Starch Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 5277.9242 6389.1562 2014.3951 3348.2194 75558.8986 5908.7117 2780.1706 5750.5823 3620.2115 4384.5135 4111.266 2121.8318 2199.6774 3931.4106 7071.8961 3725.0827 3431.17 4152.2297 5128.3322 10175620 arsc Metal Homeostasis Arsenic Detoxification Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 12771.0635 4747.5313 16464.2293 5472.0085 4473.9404 4436.1943 3887.8858 15071.7266 6248.5793 51553.1309 3557.7265 3557.7265 17624.6737 13329.606 36314.4028 2201.8739 8471.5402 5658.8232 18753.0348 4215.8724 12460.4108 6509.749 10912.6563 9001.4332 3103.1134 403197193 linb Organic Remediation Pesticides related compound NA Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 8014.4526 7887.9836 9835.367 11965.912 6757.1726 5046.3869 7270.8152 11942.2197 5554.9996 134367.1476 11326.3018 8387.4946 4049.2227 3391.1783 3391.1783 7055.6104 12915.0247 9983.7621 11874.8135 18868.4932 9532.7226 4815.8566 4894.7344 11257.9569 4811.8056 50273.3262 7325.8582 14888.7384 6146.7926 7445.2066 6187.4315 6004.7095 12408.6617 333749662 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfotomaculum carboxydivorans CO-1-SRB superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum carboxydivorans; 21046.4484 9436.2636 11558.7314 9971.1885 5839.2495 2128.42 2128.42 4231.9171 6668.0477 5631.3331 5864.8168 4778.4324 3599.192 4802.2302 3259.561 2383.2457 9700.563 388276153 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5851.3351 6366.5569 9117.3904 3540.3394 3480.2919 2315.4355 5335.1774 5424.1197 154403.9101 5379.828 6502.1778 4354.3986 4354.3986 4942.6764 7728.3901 8815.4131 7216.9301 18007.7009 6442.8058 3753.3336 7228.6807 20332.4938 7576.7229 19142.487 7041.709 8921.738 23668.4461 5835.6652 4608.1814 5867.2122 5275.3099 299134130 SoxC Sulfur Sulfur Oxidation NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 15916.2886 121824.9321 6016.0118 19244.4553 7561.3582 5149.2298 15483.3592 11800.6817 31653.8148 10765.2684 472739.4445 74726.52 41645.8962 5618.799 21018.5752 21018.5752 10323.2438 22297.3803 11884.9348 16394.4969 56745.2566 8451.1478 6525.0427 13224.1869 14972.0022 10368.588 34518.1667 21229.1849 24247.535 9087.4343 12613.9472 8551.4765 30940.5701 12524.7296 359785813 urec Nitrogen Ammonification NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 28715.3233 17352.8687 45853.1151 48898.8575 6504.493 24503.8131 12337.7852 8104.5073 13167.2569 27631.1984 28200.2423 669736.106 12072.5986 17826.3713 51982.3026 15679.5456 15679.5456 8362.7456 33544.28 24676.7352 13711.8004 43594.9776 45484.11 56869.7449 12864.0312 18984.9922 19361.4653 87448.5152 17042.0094 76961.8756 12148.0492 72716.2291 23850.4698 11378.3162 14489.4932 145243674 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7949.6527 6378.7222 4845.5083 3557.7676 5422.40605 4098.4242 7194.7 3848.06075 96888.6007 31696.6736 8148.94885 2548.31275 2548.31275 3337.6083 11327.09235 5287.93845 8060.32055 6237.71 3395.43775 5759.59105 10124.7519 4359.71405 12638.67375 5893.09525 9298.35165 3536.46835 3979.5429 5148.71065 4958.4525 257335202 FBPase Carbon Cycling Carbon fixation Calvin cycle Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 5204.1789 5243.0785 12527.991 16494.1113 3747.7319 2592.6324 3582.6379 6321.3895 3073.7651 70271.1702 8444.1209 5603.0943 4504.0481 3144.5971 3144.5971 3042.3429 12208.8452 5915.478 6798.2902 3245.9121 2743.6097 21841.2877 2519.6323 10211.8385 6993.9724 10583.0637 3222.0632 4563.4343 5300.0705 77799789 bend Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia gladioli superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 121861.1754 11380.5782 32907.4448 8294.4969 220348.5069 14024.0867 48546.8232 108881.4254 20855.3185 23011.5754 203567.6979 86489.9458 665211.6626 65810.2447 66465.2732 55183.8734 53972.8385 53972.8385 113838.5869 54801.8522 86418.9151 681105.9213 155300.2692 75501.291 77377.5297 89332.3717 41149.0184 48962.3397 147512.2444 123814.8552 94920.8617 24413.7765 80019.3652 54292.8748 55970.3571 472244.5912 5702227 actin_Haptophyceae Other Phylogenetic NA Pleurochrysis carterae superkingdom:Eukaryota;order:Coccolithales;family:Pleurochrysidaceae;genus:Pleurochrysis; 14474.0981 8451.6084 50293.867 8812.4341 2502.2673 21280.6039 8507.4357 11718.9654 11145.6676 206129.3114 10655.7394 43503.3919 21586.4605 18179.6155 18179.6155 8982.9236 16121.82 14520.4095 6122.5768 5579.3137 7931.5316 25300.2933 14414.025 27342.6353 40548.9666 18986.6852 8310.9012 12905.9916 17327.6755 5651.2627 10085.2803 222544016 soxY Sulfur Sulfur Oxidation NA uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 31937.2335 23394.8944 4868.0625 34491.3126 26977.7085 2787.625 9363.1035 12946.8881 8167.4726 158736.6679 27758.0974 8798.7593 59317.6745 11675.8901 11675.8901 7884.2147 24357.7702 9631.7825 12949.6566 39572.1171 9122.0958 5735.5862 7176.0287 44450.921 5081.6235 22563.1391 15185.3366 15909.6337 18895.16 11148.5571 12589.9936 6447.8644 10806.3526 55231424 alkk Organic Remediation Others NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 11480.473 4857.3526 27705.8303 18314.7343 12524.4209 78777.2406 18353.8567 3989.4708 7003.8712 9140.2935 4651.3156 496713.2499 44727.1121 17056.4334 13300.8043 12994.2615 12994.2615 5754.1513 19738.4745 21240.8452 6094.3202 7759.1817 8563.5426 3420.4517 7617.675 13656.1972 6086.4285 19642.2456 10972.7797 22600.6102 6985.1281 9985.9176 19601.3481 4792.9078 6512.04 343802384 arsm Metal Homeostasis Arsenic Detoxification Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 130986.2128 10861.8231 259346.8169 9200.4301 39031.8137 7963.0787 28887.695 98519.8413 60663.259 25956.2333 82810.2046 70424.1968 524752.547 57195.8729 75608.102 90483.8609 53559.7838 53559.7838 37072.8671 72431.0969 26655.0477 61307.6657 52828.6978 42635.8406 20453.0506 35695.9137 54718.8557 18496.8068 75584.3645 19978.7882 130259.0503 24033.6428 24364.8913 41562.8978 53670.761 90064.964 222100319 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 4188.4643 1852.6835 64166.1744 4004.7522 2487.0239 6125.9033 3640.0053 4326.2115 6662.4028 2162.859 2307.0484 8967.3855 3372.0575 5486.7646 2080.268 3268.0032 2854.5962 2508.0932 6279.3375 347738122 rubisco Carbon Cycling Carbon fixation Calvin cycle Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 11423.2921 6503.8251 4077.5746 140951.3085 5692.9508 2597.645 34026.0313 5510.9935 13734.6897 8922.1327 42691.7901 132006.1992 51241.474 28174.0157 60313.3328 40372.427 40372.427 18626.094 22338.7271 10690.1271 13452.5582 24048.6092 30382.2584 10156.336 7502.387 12882.7365 12352.1513 39252.3284 16686.7577 16457.91 9509.448 10824.1666 15848.6103 56454.295 35891.7666 328812484 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 56627.7244 16840.3975 18755.9336 37746.7812 237584.1455 188873.8618 25276.0593 43386.2967 16053.7858 32696.1715 50062.0119 53161.6581 746383.2292 223043.3333 84041.1425 58723.3087 57180.2609 57180.2609 22594.2181 73168.0065 36154.1729 22438.6976 23970.7206 55246.6966 18879.6578 20559.111 223181.6231 51123.2035 78297.5276 58290.5254 95037.1342 19694.5958 42610.7955 26875.8082 20661.0216 49977.1766 326201467 pme Carbon Cycling Carbon degradation Pectin Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 6209.6031 4033.4678 497768.4327 4245.8754 5649.0342 5211.5007 2901.8798 5334.4884 6519.1309 2963.1407 6259.0273 161379852 ben_bcla virulence NA NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 6468.5159 5472.5372 4068.5639 9711.4776 1792.2595 8866.9463 4044.2054 5757.9229 6415.3251 5104.0557 91371.7089 6250.4445 4436.0475 5373.7514 3703.5566 3703.5566 3856.9547 10597.822 7013.044 9529.2728 6701.8716 7831.1366 2986.4627 2474.6694 6696.4002 2515.6573 14511.1007 4610.1792 10849.4902 3628.9472 5188.977 10152.4062 3956.2685 10964.6065 45386167 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5037.6107 74406.77 2806.9376 4180.1627 7012.3962 7454.5235 13994.507 118581.6723 15531.8188 7043.1066 3153.3757 3153.3757 3732.796 11992.0576 5733.6815 7440.4982 6914.8742 4809.6545 5605.1924 9957.0767 12287.715 10765.9362 6340.5166 3297.246 9042.4542 8803.326 7596.0173 12097.1372 329576416 PRI Carbon Cycling Carbon fixation Calvin cycle Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 8840.0004 5943.9119 6155.4773 2638.788 4538.6817 182436.8842 6358.9734 3177.8612 9429.1216 6116.5217 5559.5451 6480.0638 2700.2903 2799.3641 6416.3134 2946.976 16900.9614 6596.379 8756.4939 2837.307 5608.4745 4322.2185 3101.2597 8756.6177 224602531 terc Metal Homeostasis Tellurium Detoxification Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 18237.0068 1613591.8499 613898.1569 13951.1444 5344.8223 53097.7502 28165.9072 8843.904 8773.2909 15867.0357 6817.0781 114221.3299 14747.6926 15650.5635 5946.11 7277.1427 7277.1427 7330.2343 26887.3298 12801.2732 17920.848 15167.7892 16753.5658 7084.383 9762.5315 12890.5483 7845.0627 27969.224 12403.866 16677.9845 10844.9315 10143.3001 11949.4281 4315.6724 21851.7045 114227221 fccab Sulfur Sulfide Oxidation NA Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 6133.8544 5361.1373 14300.2177 13657.6212 4181.366 4291.1408 7317.2398 3230.867 5285.9738 2937.388 115898.9933 4436.7967 7199.0868 8105.1415 4824.7739 4824.7739 3545.8334 12607.3277 7251.5117 7130.1094 2853.3028 4332.1326 10608.1188 3757.5197 21527.8873 9377.3613 9401.5586 3541.9438 4460.4242 2897.3745 10398.4985 40787177 phn Organic Remediation Herbicides related compound NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6135.5431 9692.1861 2408.0373 5635.1185 17463.8882 3720.1746 149664.1294 8078.7159 12524.9719 5107.4813 9763.9119 9763.9119 3791.3374 8437.6214 12103.7418 8846.4081 3019.4113 8249.8358 12819.8677 7096.9089 22294.5764 14672.0547 8019.6952 4128.0875 4399.3615 8481.6712 4584.0656 5044.1608 67934948 amyA Carbon Cycling Carbon degradation Starch Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 4564.5706 3196.1865 56085.3161 3679.8582 7103.8884 6096.7103 5994.5156 4300.4278 2115.5246 5826.5546 3577.243 5897.983 2554.7422 4164.4551 2023.515 322434253 RgaE Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 89768.0681 10851.1004 80476.0052 21962.5725 49579.8252 13839.9237 110753.4944 41939.1232 36050.8895 166117.5773 84334.0269 31887.5953 3713477.8961 44746.6848 51102.6258 47791.7447 35622.0616 35622.0616 40439.8156 64769.1222 36258.079 45892.9623 53292.07 77396.1448 51099.9438 41505.9757 43483.7285 82974.7521 114311.8122 54701.5142 155502.0411 31227.8318 44946.7585 69541.9182 33548.4791 43045.403 375081324 cda Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 52584.0931 6635.8997 25299.4822 8316.055 5608.061 6360.3601 9801.1438 9943.2064 8346.3483 11754.737 802378.9851 13510.0265 17993.8193 9127.7908 6963.9009 6963.9009 9604.4455 15298.9596 13270.3616 41176.3736 15617.6134 8033.8684 6721.9455 16128.8737 17475.8426 28379.3498 40791.4018 17804.6813 23318.2113 5395.162 8498.8795 9929.0971 20134.4212 13051.256 374312539 RgaE Carbon Cycling Carbon degradation Pectin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 69967.9273 10424.6813 11739.9934 48490.3676 12480.0592 12641.0726 34000.912 83337.2301 12654.3577 34486.6271 20919.1551 352333.3907 25195.8859 67487.7761 69410.4142 27605.2617 27605.2617 16853.8041 47547.1436 29896.0662 17899.8276 37082.68 40483.131 10478.5555 25345.4957 90233.5133 20818.974 58504.649 28778.9119 39688.1218 56004.6309 52405.1551 19806.1078 13715.7577 60819.0994 315416134 arsc Metal Homeostasis Arsenic Detoxification Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 5806.4104 7038.8772 4460.1867 5157.5903 5737.2437 9064.7651 3380.8655 91662.8441 7078.7674 4826.3815 8374.1843 2179.9856 2179.9856 3657.6918 9482.4389 6536.1657 5698.4406 7999.4948 3651.1257 31344.0368 24669.6493 3894.9418 14216.2639 7318.5948 9510.516 3464.9455 3411.4371 7312.2084 3629.0131 7382.1323 149360459 urec Nitrogen Ammonification NA Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 15839.8173 143096.9267 20848.2738 116758.9097 9181.9968 10925.7533 10762.5605 16604.2548 13487.517 22031.5715 7104.2546 361977.7514 19396.6551 16970.8394 17242.0678 24864.5711 24864.5711 44408.1736 31837.3056 16062.1262 12244.5817 16567.2523 17745.9079 7113.0168 13481.4858 25582.8118 8928.2588 33998.0823 24187.8306 27927.1061 12459.589 14750.2733 14130.329 10571.3945 16552.1196 118029486 arsc Metal Homeostasis Arsenic Detoxification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 42246.5492 10207.0581 20618.6878 34116.5448 5836.0851 16596.6097 12889.3881 6819.76 11496.3501 21939.5167 19968.0641 261837.939 14389.125 48652.3723 66358.5046 22654.3632 22654.3632 14384.5657 33537.9682 16787.5272 48627.9399 20572.3778 39145.4243 14769.7069 16796.7966 36767.1717 12895.323 39355.3176 38650.854 42366.3946 11225.5507 24813.3321 39116.6494 11264.8366 16665.5131 37575471 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 226368.8421 14109.3742 13044.9673 19219.1689 13922.6357 19803.746 69530.18 19319.7294 26705.4203 22530.0126 446405.4362 190558.7889 45808.2263 22416.4176 21280.1441 21280.1441 25121.5379 30540.1481 31768.5505 22507.461 48786.6539 62650.8734 8902.5318 17199.3888 60596.4102 21721.0069 51879.5421 41949.7355 40094.3404 21750.9738 17628.2143 37702.7629 12282.629 25342.2873 45188200 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 4753.9302 4666.6543 12712.1645 10785.5626 4668.7872 3695.6354 18440.7423 9545.2944 7297.1732 7219.7471 101414.8805 8343.9062 51005.4561 9482.3514 12324.5184 12324.5184 22351.6025 18061.5157 6104.2855 3805.8558 26586.313 8097.0264 3200.4713 18951.2965 7306.7174 24309.5019 22028.791 23983.949 28546.6006 4684.4081 21364.6175 16563.752 12472.7129 6119.7454 296394412 cysJ Sulfur Reduction NA Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 93652.3752 13966.0645 129250.6416 81862.0069 57898.2376 14291.9459 60246.6676 32499.711 215263.4227 89516.9686 38199.3927 25430.6612 1739871.7469 50326.7725 88342.8666 45031.0684 30817.9619 30817.9619 43776.0234 50067.9996 44366.9946 40271.4528 45313.8071 35747.498 25289.8823 36152.7927 89753.854 26353.0774 92087.575 50361.2121 50265.2939 20676.5241 28338.5378 32896.7809 56395.4337 46561.1138 422314231 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25550.2759 4857.4836 14327.8519 10447.426 4612.2677 8004.0166 8351.9781 8877.0741 7180.9151 38558.5788 10184.1792 192476.337 11452.4774 8859.037 7928.2816 4261.6792 4261.6792 6327.7789 45386.3626 8463.3786 9922.1323 22774.4043 6713.0282 15178.5031 7459.9012 17058.9328 6403.0306 18375.0263 6084.8958 12442.9784 9994.6195 8144.3855 14750.5919 4789.6246 6110.6052 62358829 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma brucei superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 16024.519 4856.3982 28872.9266 15975.7357 7080.83 8073.1461 5512.3181 28641.6341 8345.5277 11134.8615 138385.8806 12571.8944 10830.8824 12186.7243 8067.8558 8067.8558 5051.7438 19954.5963 17143.4314 9501.0933 14806.1557 6914.9891 10003.1149 12874.1201 4896.4995 32586.9913 17710.0541 15476.9137 4464.6321 10444.3899 14437.5504 7749.6957 11495.2388 289208250 arylest Organic Remediation Aromatics Other aromatics Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 4445.146 5082.4004 4520.2929 9034.0054 9439.3264 6752.5822 5280.0796 3224.2186 5340.8425 5141.5929 2264.5882 79489.8535 5252.8524 4564.1221 2076.8514 2076.8514 3574.8528 5848.7744 5513.9238 5504.1417 4504.9669 7097.9681 2704.5638 12459.6729 16871.2128 4431.7946 13517.4802 6266.7022 7806.1219 5298.1308 3956.6482 3195.0719 3664.9494 7489.1641 48544 rubisco Carbon Cycling Carbon fixation Calvin cycle Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 35497.7674 27501.8624 12414.6069 13054.9984 7944.4075 6625.8779 15415.1668 22569.4566 18317.1357 18722.1789 21542.6795 13129.7282 1274445.8758 28387.5294 414567.0356 59128.6572 12988.5771 12988.5771 33605.7116 28754.0679 14285.7633 63793.5223 24019.5185 16537.5023 46260.2844 33140.2104 22761.8898 26453.0579 84893.6456 21760.094 19114.6226 11936.8349 39808.9898 18859.3422 21443.6873 41311.7664 319742756 gdh Nitrogen Ammonification NA Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 26150.6332 13169.9182 18671.9116 33990.7904 37843.8854 9506.7991 57418.9028 18592.1813 19586.2919 29718.8512 59450.0779 14587.0209 628678.8608 26607.2086 26865.0582 27468.3853 11471.8474 11471.8474 22801.4 42808.2048 35095.8462 24613.5234 36127.0831 31467.7844 18678.5264 15011.7739 35973.9086 25414.1335 69521.6864 20763.6586 40686.766 18898.0941 30277.5557 22364.1081 52668.4322 79841.0898 239819993 tfth Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 20038.2103 18975.9505 6190.6755 7978.7494 8116.7215 4091.096 5505.8124 8102.1152 5024.1812 192111.3796 11623.558 8265.7434 14096.1839 2390.5769 2390.5769 5239.7211 16283.4019 13483.7811 7206.0135 20309.9148 13710.2971 4872.8185 4047.3408 10538.144 8054.7251 18975.4325 5293.781 11010.1961 8400.6891 11302.9564 9361.2243 6485.1548 15757.3899 329945430 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 8142.9119 8457.8328 15177.7612 16705.7844 6953.18 9683.3671 2889.5823 4925.2254 4403.1507 5887.27 138021.4164 5867.8402 16616.3941 8431.6118 7879.7647 7879.7647 4937.107 12771.7689 13882.9636 3786.6323 10473.7813 11183.2732 3673.9088 3190.9769 7420.0322 4705.2852 22182.5438 4168.4604 8070.2346 6809.1531 15012.2251 8475.3838 6916.6002 7068.8366 237846121 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15341.854 7380.4757 8315.0262 16151.6623 5731.5311 7974.1694 4558.0877 19155.5114 11398.14 8433.4499 436228.7589 10662.2794 8064.3373 13604.7404 7487.5678 7487.5678 6242.0167 16994.7809 15020.4867 51639.9529 13985.0433 26242.8666 14327.9074 5493.8778 10312.5085 6334.198 19710.8009 14190.2844 15265.6153 3619.5173 19086.2103 26337.573 6050.0098 16123.5698 288944227 vgb Virulence Antibiotic resistance Degradation Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 9245.7874 2504.902 4367.9686 9794.3702 3516.1852 7407.5949 2330.7528 55066.8003 5898.1909 10413.6252 2691.2237 2691.2237 8412.7204 9411.0253 4830.1044 20684.7917 8754.027 6955.0107 3694.2777 7300.6513 8848.3581 2183.2521 4176.9327 3243.141 5468.2403 290961401 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 77779.1175 108150.4421 24796.0409 31568.2623 6013.0669 53136.0921 51786.8628 19991.4864 19008.0155 34467.3342 35397.8689 1266559.6443 26118.7044 27063.7667 705052.3029 18612.0156 18612.0156 13419.9677 42954.1888 20515.4612 30307.9336 42772.6128 28220.0945 20512.2474 35040.7978 26280.5029 15029.672 39520.3175 33770.0591 36318.9828 21204.1723 21854.7593 39327.9566 18771.5329 28400.3146 146284232 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 174938.4875 24248.3461 83416.2743 128540.2217 865946.9593 102375.7707 311806.2399 95010.467 70602.1567 78856.4591 103419.2566 106986.1136 3302668.6146 154855.6552 103639.0266 158988.4515 78210.1771 78210.1771 141283.0951 99459.7115 59962.5071 109800.4891 193052.8394 395070.0202 140766.2606 75694.7911 111784.6849 101522.305 293124.4336 151803.1882 187493.5733 124528.9372 66517.0034 214261.1088 82751.486 191963.5332 332975987 amyA Carbon Cycling Carbon degradation Starch Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 83140.4047 13955.9614 18330.5757 278752.0871 48305.1495 19608.3912 19427.5245 15320.0968 11950.9366 48623.3754 14630.6036 422695.774 22952.2383 42202.2034 40772.6451 21650.5669 21650.5669 14971.0575 31270.7052 23306.3003 17569.2636 17453.4617 12790.0074 9149.8651 13743.279 55736.1529 12944.1761 73263.3477 89928.7127 50387.4355 16631.6588 21978.2362 18864.3554 29312.9943 18788.1424 77639209 dmsa Organic Remediation Others NA Alkaliphilus metalliredigenes QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 5447.9521 6220.565 6528.1358 169244302 pcpe Organic Remediation Herbicides related compound NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7746.0468 13774.7544 9891.5282 9085.5601 86051.5812 5601.0672 13243.491 10832.4673 6319.9832 8594.2895 11661.324 14207.376 297361.5177 12495.3515 18389.3404 7148.6734 11030.8585 11030.8585 11133.8561 19392.1249 12922.1581 8854.3452 12370.398 13854.3604 8273.5635 8101.733 30975.5553 6130.7604 8231.3271 18283.4681 15750.9995 7694.8077 10169.6078 17059.4418 6160.393 15012.9065 239611813 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces dermatitidis ER-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 33675.6371 14718.9214 8601.6991 8726.6696 586507.467 6179.461 9980.0518 12100.9884 13030.5057 111483.7087 13440.3078 280280.222 32925.277 20277.6087 12087.7562 21981.9762 21981.9762 23607.2391 75628.7861 13691.3388 24728.5886 19146.5222 66056.3522 12301.5526 11200.1051 25087.8657 51293.0891 45752.3345 27273.1155 31664.2611 9827.2406 19643.572 22331.8289 15078.6992 21450.9735 338233408 alkk Organic Remediation Others NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 19678.6895 20263.2682 10625.508 2441.5722 3123.3598 2148.5453 5283.7397 8471.2947 19067.5842 139878.4941 6678.8104 7889.0219 33608.2381 3344.263 3344.263 4853.6024 10778.7886 7419.1726 5201.8693 13129.6076 16659.2994 6542.7808 3974.8418 8978.7784 5761.0658 27370.3415 10966.5833 9536.415 5241.9057 6565.4003 21801.979 3767.9765 41685.4101 340539229 arsm Metal Homeostasis Arsenic Detoxification Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 5219.9362 2468.7821 2343.6176 5461.4927 145939.1104 4661.6572 2489.6374 2489.6374 12255.1171 4629.1981 4587.8033 24040.3 2392.8876 2793.1364 7434.223 3170.8304 5756.5327 9162.466 1708.1008 3691.2278 16794.7863 4811.4033 292560773 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6394.3702 24513.1584 13590.3982 2286.7753 82025.5326 12655.3073 8485.4158 71294.6382 3905.4823 6294.5546 9533.5225 8349.889 8349.889 15990.2051 6184.4302 1596026.7715 15233.3152 2829.7534 3240.4007 6772.226 7098.133 21627.3197 11707.2316 10031.3721 4813.4888 7353.3041 147573.4795 116633918 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 76260.3648 17190.4286 32108.2953 69848.5548 11240.5944 48146.8499 19668.0438 43526.5511 17506.2653 25804.2586 49910.3857 465147.4049 35654.0688 60090.2426 26809.8608 21821.9156 21821.9156 22899.8139 54076.1036 24010.0424 22021.4962 30383.3337 29416.0622 39617.6214 19467.5426 32920.3906 23018.9334 53409.6678 24839.1872 32508.8216 31935.8219 35249.8974 28052.6351 13605.6961 37837.4921 256379342 endochitinase Carbon Cycling Carbon degradation Chitin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinosynnemataceae;genus:Actinosynnema;species:Actinosynnema mirum; 11901.1832 7098.5126 8843.5709 8098.3884 9667.3709 5673.3073 3875.3324 20081.0633 50671.9719 10481.8817 107171.4973 10031.9166 9710.8067 17073.3013 25918.7829 25918.7829 14107.7258 13680.4521 8182.9374 11456.8872 48328.646 24896.1294 14815.1588 17451.1181 18766.4673 18621.2262 40788.4208 5839.9357 19556.8635 7763.5802 10005.3972 43260.9728 25261.1221 25560.6407 153007442 arylest Organic Remediation Aromatics Other aromatics Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 4770.2892 2441.5294 3391.8126 38222.552 42387.0948 3662.0227 3001.7643 97696.4712 6918.1527 5158.8286 3516.6306 3516.6306 4518.6716 9228.3989 7888.9886 6279.9587 6285.4348 7269.2228 3291.2084 4229.8525 10142.4532 3096.0519 12286.545 8652.3238 3122.0419 20603.8713 17049.052 3385.3731 12079.7045 86567195 terc Metal Homeostasis Tellurium Detoxification Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4411.3525 2002.3252 10243.3944 159629.5886 7164.3556 5184.5269 8628.6748 2976.0192 10479.3868 4337.7928 4221.6007 10114.0218 90198726 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 121668.8614 12383.8201 35833.8479 1044484.718 50438.4764 27416.791 22042.8156 221205.8382 22242.1938 33194.4987 39003.1272 30934.8724 739108.9693 42259.4911 47490.4689 49880.1615 63305.7291 63305.7291 24929.7681 53434.5581 53383.1317 53147.263 86133.0141 79958.1781 103688.3589 31128.8143 378132.6499 138643.4806 73099.2905 184711.9242 49221.9855 24530.8775 33279.4543 36896.3573 369466.5504 212209.4574 384192350 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis CNCM I-2494 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 4762.42 1816.4866 7469.9 6058.1448 2962.2748 3474.6721 3646.092 5761.3639 2583.7347 2583.7347 3735.563 8623.4113 5194.3891 6974.0114 6455.2304 5384.0284 3275.7729 2851.2746 8270.0427 2085.8754 7387.9242 3908.2857 8331.6224 1887.2416 3762.8713 3870.7985 2233.6138 6273.8213 77378681 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11590.2862 274359.9432 8077.5362 42597.6438 8805.9203 4851.281 8793.5941 7672.4839 6723.1576 6287.2688 8240.9341 291091.4942 10143.3323 18625.19 21266.2135 15437.0549 15437.0549 5808.8622 11821.186 9942.5926 47038.1707 6203.3232 10133.6939 4460.184 6139.1706 17240.7267 4907.9062 29570.3156 13953.4836 24399.3169 4788.1458 8709.7362 11233.4974 6766.2762 13484.2085 399524877 nfsa_2 Organic Remediation Aromatics Nitoaromatics Atopobium sp. ICM58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium; 25373.1254 39852.4146 8573.2381 3892068.34 437076.2635 34873.6879 27204.7883 34320.8624 20125.3742 115361.6723 18789.0061 252333.4201 26529.3783 42962.2779 14827.5566 12956.9528 12956.9528 33515.4544 37625.223 11585.2079 33098.5625 131237.4751 725326.0874 16381.8091 16275.1654 64268.5838 22867.1473 61360.5314 39323.423 894153.5167 25257.162 16462.8501 50384.4826 36495.8767 26556.37 363716263 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 14375.2438 10661.2137 12956.3426 24980.6496 10684.6829 10035.6864 15175.6406 21158.6228 13501.8305 37904.2495 19648.9881 298319.904 39630.3842 18962.1138 35936.7075 7691.0231 7691.0231 9640.1265 29781.9402 30601.6831 14121.22 14666.4929 28837.49 13666.0575 10699.4205 16656.0351 20238.976 44357.536 24589.6454 23691.4955 13027.5238 20364.4157 46169.3132 15741.3715 15399.477 70673007 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4452.4666 3740.0228 3260.8337 5954.5838 6062.953 3607.3179 29502.814 5457.4778 5457.4778 4346.4308 6123.2211 13302.8588 5399.3036 1948.5177 4671.7527 56809455 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 57944.5262 11116.0449 31572.4405 25610.7968 139997.025 28873.1942 24499.918 12515.4959 23960.0748 42776.0401 19704.6027 620420.6906 65450.1618 40095.4601 31762.8745 20574.5383 20574.5383 31264.6679 57944.7404 29937.4069 38526.1297 72257.8868 80297.2731 41936.4348 59600.2771 34627.391 20162.3173 72959.071 33022.4804 54050.9588 22122.9437 58102.9085 33972.2549 22600.1662 59336.7318 89054435 cellobiase Carbon Cycling Carbon degradation Cellulose Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7868.8261 5132.3565 7274.6963 8507.6809 6847.1595 6980.3036 2319.3788 5097.3399 6393.8686 4751.7619 107394.0626 7337.7562 7962.2137 2720.8687 2720.8687 4887.3615 13899.4426 7460.2298 5428.7788 8713.9407 4973.1729 2723.0744 3434.0306 14654.295 4618.9395 14733.0538 11292.7991 9643.7701 2993.4607 6077.0302 5253.0578 4786.3198 20835.8803 148256848 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 24296.8138 10963.7479 9111.2748 4123.6085 3011.6378 206816.9976 5744.7888 14417.3437 4018.1249 59409.7327 4388.6793 5402.1899 5635.7014 7340.2383 7340.2383 15744.9397 11114.4868 16909.7313 8123.9055 4206.1716 5588.0441 28963.0168 12721.4589 18937.4352 14882.5516 7776.2447 2982.3375 5580.6758 7351.213 4079.8405 8597.3854 347590442 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 4669.7512 13384.723 7435.2866 5868.5788 16782.7156 4128.8968 2375.0962 11187.0933 34865.2945 160323.466 300775.901 18163.2098 28421.0102 7724.3097 14415.1458 14415.1458 4958.3123 44040.3159 18696.3264 13699.7028 7213.0033 6063.5741 2494.3505 17272.6999 149474.6636 8702.3737 437941.7706 27451.6168 15026.5545 7129.4529 12711.4679 12895.7761 4145.989 167646139 chnb Organic Remediation Other Hydrocarbons NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 11984.4065 16170.6978 5469.6065 7205.268 6810.982 10522.9512 5708.305 13024.0234 10365.3783 6922.0815 190953.6896 12522.2211 27380.0351 13485.2805 11670.908 11670.908 15003.3485 21595.0766 13799.572 11613.5848 13145.5242 11996.8363 8114.4377 8855.9137 60797.476 16631.2991 31507.1211 23974.4604 18140.6416 11221.3593 15710.657 9858.4195 9459.2905 14984.247 298250105 chitinase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 150897.4487 13536.3133 28119.898 27421.5355 15718.1368 5955.3003 19082.4813 131197.0252 7970.5906 24173.0149 51082.7481 46758.8991 440180.6725 84437.4961 86600.6025 22780.7189 19050.6119 19050.6119 16300.0788 48432.3443 18749.9964 16413.5797 28676.8565 13037.8246 18600.237 37218.6368 37875.3715 35346.6913 62041.4957 227619.7464 31629.6689 19406.744 26819.0075 21652.7769 13160.5331 24729.2299 384135775 dehh109 Organic Remediation Chlorinated solvents NA Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 77512.727 13524.2892 3253.2192 4068.1141 5017.5847 3990.0868 2431.5343 265376.6745 3628.9027 7270.6518 103934.782 4819.7437 4819.7437 11868.3711 9272.6255 5633.5075 2672.3221 9939.9514 3690.4069 5185.0843 2130.5234 9267.9919 14138.8856 116061983 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13506.7701 30003.6946 15196.2352 218650.0327 50568.8544 25878.0492 249332.9059 5374.9333 21857.4872 72197.3606 43603.4934 607145.4867 40665.3567 43996.0718 60100.2288 30580.5824 30580.5824 14601.6937 48861.2232 26937.6571 6654.1077 26310.7781 13631.5523 22807.8324 27956.6995 59998.4517 31081.0123 76243.6165 165638.217 59341.0604 20198.9023 33720.9459 19904.2823 54537.4002 48682.1647 151302180 aps_apra Sulfur adenylylsulfate reductase NA Desulfocaldus sp. Hobo superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 297623.6311 9700.4532 114164.8177 39172.8643 73232.0053 82299.4534 80156.9429 733558.4623 161480.7646 170732.9195 75273.965 44639.4804 1089035.9293 72811.4133 160760.7789 141326.6438 218819.3468 218819.3468 89240.4063 204468.7833 80463.497 304392.6877 100381.6228 213073.1808 78689.7607 63473.517 66583.4661 39151.8777 155764.262 104635.7362 83929.9062 78831.4365 63420.8836 105593.5138 31129.1098 121182.981 344338285 ppx Phosphorus Polyphosphate degradation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 8092.9972 18173.2265 13887.095 3839.8395 56286.2842 7250.0048 2771.5443 9967.9344 7757.6656 7962.0582 7962.0582 4973.0535 7888.2991 7717.0113 5657.7044 6610.7473 2719.9203 4833.8003 7544.5631 3616.7281 12411.9804 11791.6491 12861.5236 3923.5937 4980.5719 4580.3109 6754.1025 364578203 xylj Organic Remediation Aromatics BTEX and related aromatics Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 28519.5665 71208.1101 20616.7631 8276.5498 4899.6017 8133.1241 8940.683 25617.7306 9804.376 24465.7813 33905.4103 481214.4941 10472.029 9542.3221 9014.1766 16838.4138 16838.4138 6542.3919 17172.554 17385.8788 55310.3472 21160.4095 10537.7041 7625.8202 10262.1923 13763.828 7426.9361 25052.4048 8835.2988 18048.7035 5837.4398 12137.8387 15100.0458 6519.4119 23351.8149 347527890 ppk Phosphorus Polyphosphate synthesis NA Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7127.7824 9438.3646 7619.9756 1988.5749 3037.9437 2115.8111 4880.938 3978.0102 2643.0409 114849.6755 5767.3526 4622.6807 1839.0964 1839.0964 3014.1652 8051.0454 4052.637 3318.9418 4010.1438 50183.4111 3020.3153 2886.8319 7899.5851 278537.3746 7816.1564 3698.2951 7058.2214 3120.2376 4897.897 3921.8226 2645.0857 7407.3864 254442885 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9075.7132 5573.7894 21798.087 11319.0267 6632.555 17850.4137 4128.8712 5545.725 26504.019 5956.6816 317395.4071 8632.6484 70819.7771 9226.6051 10112.9623 10112.9623 3274.5928 17673.6998 10391.6586 9288.0853 10745.2244 8483.3699 4026.3028 6917.755 13242.5646 12238.4476 37995.065 10606.3781 11319.2132 15531.1588 7249.8564 6908.9267 7098.4964 14268.2012 354958992 rubisco Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 70398.0551 22847.1059 27224.0203 223753.7358 53415.5032 14468.7761 28865.7397 42465.6459 49276.1606 51867.5216 43015.7041 45221.9834 1630256.7184 62147.7424 308427.3673 51946.4907 33706.398 33706.398 22906.1423 69911.9698 52972.753 61047.1705 66256.6347 125660.4808 59537.0705 33857.5193 86999.8751 50526.2819 130721.645 50110.7683 65791.0286 469692.9491 64287.6078 31645.0161 38960.9137 108511.2772 160346285 aoxb Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 4302.3104 5325.233 8494.8908 17766.2084 9763.5273 7382.2716 6877.7962 4181.3762 11740.0206 19715.8989 118348.2378 14409.9166 4748.8771 8326.2222 4606.8192 4606.8192 5288.0386 12724.0631 8192.1683 10164.1164 23375.4404 15428.1707 9470.8963 13880.3567 18003.5824 18589.8734 4549.9651 5045.1735 6117.8747 35627.7801 147850234 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3560.3697 3198.1918 3551.6064 5890.2063 3442.2322 6636.6371 3508.9226 2791.9386 3201.2914 5257.9909 258544002 ppx Phosphorus Polyphosphate degradation NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 12204.9597 35413.6068 15057.7182 10605.934 15892.3015 30042.3179 7538.916 18474.9816 7469.9915 8800.1968 9739.1631 126577.1351 10398.3838 13755.5146 10757.9395 7925.0919 7925.0919 7690.4875 47158.2896 13495.3567 10051.2064 11098.8628 13117.5086 150736.5735 29757.0286 13950.3792 8614.1609 32708.0179 8265.553 15804.4849 9212.8309 7863.583 12552.1473 21426.1243 13147.2189 331230996 glx Carbon Cycling Carbon degradation Lignin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 23183.9891 28806.7209 22983.7163 19384.8481 16930.0548 14460.7768 35644.1578 12126.9377 6872.6131 18964.4118 28455.6541 12740.1484 329719.9119 22841.7104 21171.3797 11462.4677 8915.0144 8915.0144 15239.2543 41979.1305 32520.0908 15329.5688 32161.9897 33119.1743 16568.6177 12414.5195 27996.8093 16390.4399 67587.1759 18922.3557 35967.9786 19157.6896 20299.7606 19760.4216 10986.3625 21506.7662 385763959 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium ws198A12 superkingdom:Bacteria; 197047.6002 127229.3816 54641.431 104180.0818 18194.8647 64855.9567 77419.265 85840.1217 46508.6832 198591.2206 45451.8282 2853885.5216 59356.5419 109075.5838 157564.2773 69633.0194 69633.0194 41468.3949 143177.7517 70037.6086 120014.2577 205954.6036 143578.5303 89149.3972 33400.6372 60541.469 32147.518 156372.4667 53234.9721 117759.3134 48623.2309 58097.1023 90274.8602 43949.375 336743.6374 238752182 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 24706.3375 34832.2085 4508.5654 5129.7234 4361.0689 7123.7567 10727.4641 6274.0708 133341.1309 7536.8246 9480.8796 9283.2357 4075.0305 4075.0305 5250.4801 16227.7911 8591.0664 10021.8133 8034.2665 8010.7562 4533.3271 5380.7573 9707.1944 6603.3942 17986.2623 6896.715 9924.603 5933.8351 6583.1254 5971.0239 8683.9165 8756.0868 300087989 glucoamylase Carbon Cycling Carbon degradation Starch Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 18601.7346 20532.8347 9848.6924 29357.6052 40094.8215 13033.328 7549.8707 35288.0912 8032.6928 18086.4998 14883.1888 10436.5941 504460.6668 18585.2495 27608.0806 30788.5327 12978.9154 12978.9154 11996.4497 101200.3833 15364.0498 11954.7608 18305.6562 24326.3537 9294.6904 11702.4684 28255.795 21948.9938 10107.1043 9095.4562 29744.5291 9966.5428 14764.3582 10945.1542 62056.4808 25594.6996 218239490 gdh Nitrogen Ammonification NA Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 4859.116 9773.8183 6619.7998 3372.8817 2927.6301 4088.9284 4642.3255 3962.4239 91973.1442 8407.9221 5927.7092 3617.2483 3617.2483 5201.1825 9374.1299 4900.5574 5569.7939 7858.9493 8319.5207 2884.7977 3801.2159 12272.2931 3017.5674 12650.9589 8299.9915 7698.4384 4076.3388 4533.5489 4769.6164 4083.2335 7204.6682 90420342 urec Nitrogen Ammonification NA Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 230398.7557 60803.2535 98176.222 36584.095 54961.5831 9434.0569 115493.7943 55228.1983 60096.8407 115913.5342 51669.8425 75141.6849 1309680.3588 52722.1081 100233.5571 96240.7601 80582.8373 80582.8373 382422.9696 104114.5192 37689.3385 58872.1436 58972.358 42298.3583 27366.1837 43038.9832 68396.2647 40236.7347 146731.6957 41972.5893 61683.5731 29341.2383 38013.5336 42171.5397 35967.8276 122404.3575 344199183 PRI Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 124917.0492 12419.6971 161380.04 26671.0333 88055.9561 29139.5442 558824.1178 94770.0213 79485.5338 124479.7091 135978.757 68339.7169 956999.5307 63754.3659 117079.3187 73467.1039 73366.5496 73366.5496 64515.3524 286474.8896 118289.8373 228651.4517 164117.5737 175317.0768 65930.8365 177300.1446 87744.6289 71293.2155 166557.1591 143491.7384 169908.1345 35498.0874 53656.209 60447.9063 67443.3692 1763430.6502 374370275 FBPase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 8196.0927 5058.0587 7310.9616 18872.8565 5574.9028 17689.6852 6206.7031 97547.1354 4314.6237 6441.0143 8285.1555 2941.4725 2941.4725 17988.5409 20134.7625 14392.3863 5568.0565 5226.6457 5637.135 8706.1377 6628.0876 15248.8961 4838.3594 21716.4582 21508.215 13690.6871 70402.2864 7957.914 11391.9046 6740.8758 10322.4762 218781822 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 103830.7279 25541.8996 95685.3947 85594.483 43350.6928 11747.6141 79127.4988 279714.0925 128090.412 88074.9664 106547.4339 92131.476 3986223.1328 91952.621 190132.3022 220750.1349 61508.3513 61508.3513 330307.2122 132774.6138 61803.2446 812252.4473 104582.3712 109236.5943 40844.4462 47932.1889 68097.791 43793.0677 52056.5707 27790.1942 77360.9391 37667.1178 45476.3394 71235.1734 59583.1982 137383.0773 305383630 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7820.8512 6907.46 48457.5042 13174.1882 15563.2964 4588.7094 6975.6287 151708.7661 52517.4645 95741.0336 13779.505 6180.237 12277.5815 6835.3894 6835.3894 4953.3567 7947.0266 8296.3541 10194.03 4261.0817 16457.2939 3253.5059 5262.1001 16776.1834 4295.615 15830.3009 25680.8611 14305.2494 6241.3527 5214.4003 7200.9242 3556.5537 5041.1177 377539344 tehb Metal Homeostasis Tellurium Detoxification Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 5531.0376 29741.974 18720.3588 12867.245 12316.862 6345.553 8390.1395 3296.8326 9097.4872 7931.1372 8320.0414 279788.5792 13582.7092 12995.1712 13433.2868 9673.1876 9673.1876 5755.6291 16687.0218 6113.8482 5445.7034 5586.8567 4680.8976 11679.2233 14331.2343 8381.8438 13717.617 8443.6226 14466.6881 3666.5062 6884.519 7709.2837 19191.3666 8348.5207 398822158 ben_bcla virulence NA NA Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15059.1472 59370.1341 6901.4264 17525.5469 18494.2735 51350.9319 31279.2719 27511.0932 19166.8079 237393.291 10843.4852 22663.299 10162.556 11514.6675 11514.6675 15139.0306 20365.2493 15120.6099 8103.512 18884.5311 11705.7745 6493.6951 11042.0082 19640.9498 7065.7818 37383.4946 25364.3218 14507.9308 11019.3782 13390.7622 13246.8909 26302.5197 19301.9893 375139522 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 4239.883 12857.2792 12857.2792 4426.2979 3833.5859 5492.3543 2308.873 227112767 alginase Carbon Cycling Carbon degradation Alginate Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 88502.7455 12633.5138 25260.6033 17538.7779 60027.0444 28705.5509 43426.4981 35515.5434 49186.1628 42412.379 49421.7592 31711.556 1410787.4487 34371.7929 35288.1731 68376.7725 91980.3462 53574.8221 78741.6835 62792.4372 66138.546 105575.8508 59339.0869 49364.2769 30760.9432 133819.9937 51936.993 709907.0798 89044975 ara Carbon Cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 11213.7224 236920.8667 8608.6615 15740.5634 30853.5346 7287.437 6977.9383 12450.1541 15953.3773 12673.6626 596384.2293 17880.337 24483.8914 22785.4252 11524.3353 11524.3353 15726.9131 15803.1328 9081.2581 10591.5269 17950.6526 10081.3072 15768.4059 11443.4189 25498.6401 11286.3815 47789.3872 22240.5462 23273.6769 9353.9734 10865.2283 33643.181 14665.4939 9924.2858 383461634 amyA Carbon Cycling Carbon degradation Starch Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 52740.2743 24809.8486 49195.6501 67298.5188 297308.4012 76403.4778 37704.3952 68352.1497 126015.6305 51336.5492 72172.3353 164827.3181 1763074.2663 103501.1804 79848.3014 152610.7885 115220.3141 115220.3141 43241.1933 77324.3242 59064.6362 47495.124 40784.6628 59854.1236 36989.0997 50028.1299 95698.3789 91620.5655 143963.6454 84415.5721 130307.6735 70540.9128 88567.4659 248783.5697 61683.8521 69890.1905 378818012 ppx Phosphorus Polyphosphate degradation NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 83029.6116 5641.4191 12185.6773 15682.9758 7512.769 8435.6578 8935.6023 6025.6034 75469.9576 5465.9398 5354.8233 5764.3437 18309.5901 18309.5901 11344.3117 11669.0943 5855.9177 22508.244 6164.5525 6430.9877 23293.9948 14593.1546 5812.8579 20710.7317 10195.9457 11752.4917 4336.4305 6109.2791 19748.82 5252.1779 20991.6377 365419749 cpna Organic Remediation Other Hydrocarbons NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5569.518 6533.917 400940.9565 9407.1451 6953.6699 4746.525 135976.3124 4633.1022 5718.8367 9087.2309 4001.0646 213881.2028 10619.527 9004.7144 9691.3599 6214.9425 6214.9425 5682.5007 15744.2944 13664.0854 9890.773 8608.2798 7776.5197 4775.1215 7273.968 13255.4112 5578.2764 19108.8968 12393.4876 15325.2815 5937.8984 21499.4872 8592.9373 7821.0536 19002.3646 198262978 ppk Phosphorus Polyphosphate synthesis NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 47978.3272 5314.7066 36215.2881 4876.0225 10060.797 7347.1344 15997.9637 14754.1928 12986.2375 14629.1394 144549.6826 10763.6001 41468.5668 12548.646 134405.2702 134405.2702 8576.3459 34555.0124 50030.4573 72481.0097 28494.7335 13987.1027 10271.8713 16596.6711 14760.9693 15563.5712 58658.228 21592.0132 74198.9034 11113.224 17654.9564 130674.8718 11793.4067 26145.6368 18027860 napa Nitrogen Dissimilatory N reduction NA Actinobacillus actinomycetemcomitans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter; 11869.7432 8194.5234 5541.5565 1962.1308 1962.1308 4081.8294 2242.684 288934154 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 12948.4174 11104.2917 3692.7355 11008.0605 9768.3296 9879.0997 14291.1061 10581.2896 118542.5839 20952.8924 22219.5835 57090.7536 14075.9011 14075.9011 5610.8645 17418.4391 4473.8828 8596.5843 126336.1725 10529.4045 5104.9521 44455.7849 11312.3152 8771.0171 26695.4284 17992.018 46107.4931 7624.5359 10732.9288 13072.3755 6208.7223 6448.4499 45386157 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 4386.4705 10890.4282 2603.9028 2213.1217 5324.8577 4582.2303 5996.0792 58491.4479 7265.5894 6291.2448 7322.1344 9478.1537 4023.4711 6124.907 13057.7532 5927.7524 2176.2478 3340.0452 8646.2707 2460.8868 11313.0977 4221.9449 8128.477 3250.7004 4094.273 4130.8851 3487.5318 6183.2974 378594410 cysJ Sulfur Reduction NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 131659.0562 34377.6817 10386.8841 34201.0846 11894.28 10449.6516 24553.2912 9614.6857 49276.5252 20698.014 26797.8985 434150.2758 29724.1053 22219.7379 86962.3946 21685.083 21685.083 17452.3183 38511.1489 25894.4602 13219.0454 36740.5035 10655.3972 48365.7652 14551.0131 27043.1789 35608.4243 47057.8875 29297.9427 36989.0558 21786.1585 19844.2997 20599.8802 8495.9292 17483.9029 254448380 alkk Organic Remediation Others NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5264.6872 6254.0859 24986.6571 4727.0007 4639.995 8296.9738 7747.9445 86026.1098 5358.2894 4345.7934 20585.7083 2283.1413 2283.1413 3852.3833 10547.6042 6086.3311 8121.901 5687.9294 5354.0716 3171.3387 5804.356 6810.8713 3355.7564 20584.7309 3987.0227 9557.3141 4619.8401 6955.9697 7263.6961 4027.2413 7468.1441 355356405 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 7614.2138 51498.8325 86689.1782 11521.5458 17176.4904 3272.2119 12932.9679 8567.8333 6890.5746 115014.3932 18074.4652 5373.4273 9012.8458 8188.5653 8188.5653 6598.8938 20241.4576 8256.73 11362.3747 10737.6929 31480.1909 5374.5298 8351.7551 15441.4566 5950.9706 26539.9399 19946.9267 11426.3491 24869.1131 10150.3917 7684.6612 6464.3038 5921.6836 126731646 pcpe Organic Remediation Herbicides related compound NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 16093.1584 12049.478 10599.8816 11769.3766 7106.8487 5761.8527 5069.3166 7840.1243 20265.754 6105.054 310151.8988 11633.3021 18709.3595 56318.3629 9118.6044 9118.6044 11175.127 18746.8105 16296.2068 28065.5134 18442.1125 22106.9378 10764.9507 8983.1261 16634.4665 5600.1323 35413.3722 14636.307 18757.9187 6123.6543 14107.6722 16710.1975 7377.0206 848118.1393 222438772 ppx Phosphorus Polyphosphate degradation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 10596.7693 5673.9293 9974.4756 6297.6866 6914.5268 5703.6742 6132.831 15517.4351 6648.8374 197915.8041 19826.6831 8053.8539 6639.1645 55534.3706 55534.3706 6374.4414 15223.6069 12459.6205 12788.209 39539.5479 17490.6044 5664.9786 6109.1279 10953.3292 5964.2193 19212.3536 11419.961 16334.4887 5721.7383 6484.4916 6955.1434 4775.0933 11338.2158 256378976 pme Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 17279.728 16209.7691 5962.7171 11473.1153 11703.6918 14167.7811 15665.3291 31619.7676 13540.5634 9881.7049 15019.0638 38708.1885 13469.2049 10645.016 10645.016 12492.6548 26604.2976 18811.7978 15069.2003 16646.7875 13296.0708 6833.7455 9177.1213 18080.6086 19085.9181 144963.0036 11523.6609 22353.8326 7108.5676 17596.4263 5696.5884 62303.3423 171464947 mer Metal Homeostasis Mercury Detoxification Dyella sp. Is-D136 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 13569.2839 64139.2372 21959.4623 23712.9848 9724.5076 25327.1736 14991.3567 21213.6219 12792.9977 18913.4176 14714.1222 299602.8048 17811.3943 35163.7088 77628.132 17155.7705 17155.7705 8283.7427 25584.0203 21975.4605 22955.4066 16144.9737 18817.9073 11315.732 18095.0822 19870.4082 27101.6774 34012.3562 42946.6142 24519.4822 16979.1923 15072.6036 25195.1597 8610.8386 17694.315 306517003 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 627961.0552 258815.1833 855600.8886 582210.2764 637812.2089 575374.5372 636032.1385 391229.3072 224110.6088 246614.87 287155.7767 253609.6001 5636509.5976 278716.1523 483614.7376 526316.0173 343381.4026 343381.4026 445201.704 270480.4869 228357.2627 197672.6931 423745.2603 434790.2355 171816.2026 186673.3821 239554.5791 171376.1593 419144.5552 168913.2991 281827.1695 278310.8332 157810.0635 205004.3583 192523.4333 538572.4733 33866487 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 16824.0775 7870.6983 6982.7205 11020.7197 5941.7126 3551.7308 5167.843 4665.0509 30487.2358 19799.43 24933.9278 136430.8369 16532.0274 19209.1475 10008.878 12520.1632 12520.1632 34844.2502 22568.8183 7415.6925 31824.4573 13252.672 7618.1775 73661.6315 30869.3678 12721.1814 15966.1777 16182.9817 14935.2932 19494.6133 30011.1394 32536.5445 13554.0148 10733.109 60152.179 237886263 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 84750.7658 31002.9037 129311.8265 56018.0948 8853.1082 33581.6468 47736.1749 30741.6751 54332.9048 159620.0751 47314.3568 1145302.7082 70574.5867 50619.7394 51279.0579 36171.2236 36171.2236 48154.3265 93799.2106 67039.4375 67003.4672 79170.5456 73438.2054 50184.4634 35820.5011 69589.3921 38452.0082 113001.6144 38985.2416 52494.7112 28088.9461 41708.0341 45204.0862 51249.0849 96518.2034 90416131 phytase Phosphorus Phytic acid hydrolysis NA marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4889.2103 3251.5884 3311.1865 66252.2561 3227.0028 2839.5695 5927.8532 3910.1189 4098.5386 2083.6104 4984.0945 2973.7975 7707.6428 5176.5568 3656.366 3180.8338 3469.2027 2256.8049 152990077 ppk Phosphorus Polyphosphate synthesis NA Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 12335.6792 11736.5551 4985.4004 10482.4384 14175.0115 5193.5186 5725.1849 3826.6737 6407.1534 42576.6792 5328.9921 175851.6011 11298.9323 8947.3179 7026.5358 9656.2984 9656.2984 4968.3211 9681.7723 6252.14 8255.4063 5926.9538 8100.1399 3935.646 3827.1329 9316.018 5096.2629 16751.36 3605.4141 8466.7295 3223.5769 5356.936 6228.4784 3365.6409 10428.3789 297583552 pula Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 19513.7736 9936.9298 17070.8386 23110.4617 5448.1311 9814.4968 16342.9767 27758.8381 14701.886 14446.423 9681.8556 364982.2374 93745.3077 12971.4875 8127.8193 6627.5633 6627.5633 15738.865 21842.6764 17228.8063 23031.2762 26869.7374 23307.9481 12517.7359 11222.3164 18546.5683 10043.2426 31585.0284 21510.6733 22601.1744 8978.62 12788.3542 17456.9404 10485.0054 24015.5547 321165511 xyla Carbon Cycling Carbon degradation Hemicellulose Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 17739.4673 13771.5708 25481.6698 14621.678 27552.2115 12642.1538 14651.7668 28540.6394 10575.0134 16227.1378 8506.2024 380579.3498 25838.4762 11439.1749 16383.4553 10256.4595 10256.4595 8794.1959 30090.4446 17244.2429 17926.3059 71138.2818 22303.0612 13195.5826 13659.6394 19727.3758 8544.0912 37051.4799 32588.7018 23212.3926 13649.7162 11450.4369 18001.1126 17533.1859 50136.3672 299798750 rgl Carbon Cycling Carbon degradation Pectin Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 12987.1044 12492.539 3773.315 6326.4427 4926.7254 19340.5565 10057.2749 3607.2648 4339.4273 11429.205 4830.5923 4830.5923 15864.5746 7844.1373 5600.2668 5521.6294 20676.0875 9176.1275 5033.4474 11731.8321 9125.461 4179.9957 18733.1217 5280.0574 8206.1576 2936.9897 3404.2177 4755.2244 2720.1577 9490.2808 323366354 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4657.3501 9478.4528 4622.8192 4775.99 7277.7994 3668.7556 5149.1839 2763.7747 171667.1888 6694.1745 6652.6983 4643.7344 3135.8517 3135.8517 6916.039 13486.5002 7977.1821 8575.5996 6903.9905 15072.0828 4664.4227 4640.6253 17851.6566 3761.934 15435.9966 10668.9924 15921.9873 8025.6497 6970.7443 3743.1051 6609.9662 84510614 ppx Phosphorus Polyphosphate degradation NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 69277.1647 231573.9021 5178.7536 13067.408 5451.5542 4961.5279 1955.5225 344210197 tehb Metal Homeostasis Tellurium Detoxification Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 237726.2475 51412.8083 982599.7449 66768.2485 63647.1121 27673.7311 17655.509 29305.729 14051.243 22383.977 25592.6194 37002.4721 551164.1986 38609.509 38848.696 58451.336 24551.5957 24551.5957 12001.3945 42655.86 22252.5344 202143.9283 34657.7508 233149.4577 7595.8945 18649.2856 29635.6163 14271.7108 116025.0094 102050.4283 135342.7109 10905.9892 23984.3329 32941.7242 16030.7562 234180.4603 375140317 cmci Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 9333.695 7070.3516 10974.2343 43036.072 212836.0451 22914.354 5467.2442 11755.9204 11987.0423 27323.999 159409.9653 13226.8692 16798.5891 8081.026 7203.2206 7203.2206 5924.9761 18757.4522 10818.9581 9523.8874 13503.8267 14655.3917 13115.3349 10285.4077 12658.7635 21293.9265 26009.7699 13441.2507 15398.0571 9548.076 10712.8131 14636.0893 10652.1243 145128.4362 302674395 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4374.4903 5021.549 2016.1112 8800.3047 15341.4965 7009.3083 4018.6657 5643.3242 16040.7464 16040.7464 3318.4206 9870.2059 3757.7848 4549.5889 11336.021 4712.3204 6079.9908 14860.5812 17596.5684 6011.6311 8865.8163 11151.7419 5629.4463 1847.991 13569.838 31284.982 5138.7606 151424034 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 23158.094 16766.381 38395.077 26100.5455 41664.5192 5557.5975 21757.6979 17370.5689 13520.4128 19340.6723 18428.0825 9043.3095 564746.3189 33685.2231 34260.8492 15156.157 10465.0695 10465.0695 11788.6254 29785.3426 22828.302 59206.5349 41843.6561 32939.3913 10901.3707 13329.7063 32397.3232 10766.3564 49739.8544 16479.4908 25142.4485 60372.9002 14695.7812 12704.0688 10485.5707 67206.979 359768275 amyA Carbon Cycling Carbon degradation Starch Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 167473.0174 154467.0358 42297.1759 476753.4617 269401.9527 63209.7876 65977.839 110670.394 69624.6615 108616.1879 107041.8519 86377.9086 3420805.0915 116258.3302 136834.9483 202572.7387 143339.3923 143339.3923 54773.5376 137779.8809 179204.6671 125249.5668 128134.2057 135354.8444 84997.3864 88874.3667 124203.9222 177205.173 269794.7626 136395.5683 131292.6715 50124.9352 89425.1521 90846.8223 79231.4095 106818.8023 260576741 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 42520.1715 81556.8738 337714.7944 27609.3975 166187.7509 400085.4098 22942.4466 16715.301 32110.9891 88395.9051 33660.0057 848490.5101 24897.7387 47837.9341 47753.5347 31827.5555 31827.5555 38935.1492 54363.3019 21833.2927 71760.9019 392191.1775 32508.9669 30917.2467 23006.0229 43676.4208 46574.729 90609.1554 52381.5327 44433.7501 27728.002 38894.1271 46990.1081 32210.9645 33132.1508 380684955 dehh109 Organic Remediation Chlorinated solvents NA Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 11500.3777 5214.5497 5262.2643 9591.8819 9273.0625 4273.4781 8421.4506 11412.3191 9480.1791 4547.6279 144607.1882 29839.5203 9668.0916 6483.8473 5061.9005 5061.9005 6874.8097 18162.8479 11830.4519 11796.6379 12356.5014 6799.6357 3121.5739 9332.6111 11511.8485 6269.6237 20887.6746 9672.3599 15547.4764 6235.1442 10857.9757 12871.2526 15923.7128 8262.1534 108524633 mer Metal Homeostasis Mercury Detoxification Plasmid QKH54 24681.8095 10879.3567 90795.4336 11045.7015 29780.9611 38235.1113 11289.4461 9523.7764 3434.2394 8195.3474 12696.8185 7174.2925 215453.5666 35987.2646 11995.7355 13025.7462 7640.0995 7640.0995 5814.2116 19722.7193 11069.6665 34424.0042 15628.1449 14608.411 9092.1822 9516.1072 18853.6899 5031.1011 22899.7925 17184.9755 14069.23 9707.8088 8682.3906 7635.4829 6368.9388 6407.8779 2576394 dsrB Sulfur sulfite reduction NA Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 19825.6859 13849.9675 61419.0843 27846.6267 6298.5469 21673.1047 29265.4353 10623.1445 16582.7064 29505.6355 9355.6603 494164.2465 18716.9298 16939.5613 16927.7619 13221.8356 13221.8356 12933.0162 29959.8422 26123.3862 21895.7819 19058.6865 23502.226 8340.0834 10499.781 20254.6557 9861.4048 41583.6127 23266.4708 33319.9001 11496.61 12382.7446 15372.542 11597.2253 32384.4777 374604636 cda Carbon Cycling Carbon degradation Starch Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 9113.1817 6273.8806 5584.9894 2741.3973 3856.2518 4640.6306 5240.2899 3609.9086 111657.6027 6494.6737 4128.3455 1958.5104 1958.5104 5506.5428 10249.5295 8690.4635 4780.2398 11131.1388 6703.8316 3546.7174 3250.6387 8119.6202 4479.8768 13506.3881 7526.1715 9114.6357 3442.8371 4963.7247 3939.7034 3854.984 6910.6923 354585341 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 12333.1661 9119.3927 9622.3325 10328.1075 7415.7342 6198.8929 6188.8357 11356.1788 16910.0583 6457.2466 198590.7936 11436.4023 9787.5772 9454.5422 4068.8735 4068.8735 8038.0056 23859.4822 13306.3383 17256.2527 28293.7159 24102.5696 7561.7825 7193.436 18448.636 8722.0392 27515.3195 12881.8175 16984.683 7083.2007 10546.9579 8315.7095 7612.0111 20764.1167 72395892 ppx Phosphorus Polyphosphate degradation NA Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 4002.3114 4578.3575 3317.5495 88866364 dsrB Sulfur sulfite reduction NA bacterium LS1414 superkingdom:Bacteria; 4563.9078 3761.1606 3093.3752 7201.9432 5015.1199 3001.6474 2601.9998 2076.7651 365879093 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 65242.0728 6807.6892 116193471 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 1048479.5994 15132.1776 53204.6399 15555.3013 10045.6516 13121.6784 23570.7122 18060.8018 18598.8183 30734.6396 22246.0445 435478.9661 24071.9047 31763.8012 50416.0455 11804.5457 11804.5457 18311.6588 43325.9306 21218.876 53988.1484 79498.0123 28539.3047 21614.9675 20304.3128 32773.2712 22913.5945 75837.5114 23099.8165 25201.7579 20600.6188 27730.9337 22498.8027 84660.4301 29470.6835 329114531 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 4522.7723 9439.6395 7383.7138 8663.3074 4178.5773 3374.6016 9626.6703 5572.7209 26187.0994 19669.6897 7545.9391 2399.1922 12508.5021 5133.7836 5856.6313 1909.2335 3016.154 3000.894 9903.6951 210630944 arsc Metal Homeostasis Arsenic Detoxification Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 16104.9421 5605.6647 66664.5874 2359.5076 55404.138 4074.0603 3424.6896 191377.4377 6089.7885 7958.7912 5525.3903 13481.2459 13481.2459 7863.4895 4002.3976 4523.303 9296.2569 4372.9318 3318.4889 15813.4217 20160.167 6180.1284 25213.3012 7785.1812 3863.2153 22117.1073 8030.8001 5535.8353 375009048 RgaE Carbon Cycling Carbon degradation Pectin Geobacillus thermoleovorans CCB_US3_UF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 34568.2524 41652.4626 12085.188 13995.8888 21709.0842 16366.3685 41380.5678 27316.4945 16539.7954 254545.0176 17494.3383 834661.3547 27956.9042 48364.6256 39036.6519 40324.9086 40324.9086 43368.2137 60770.5987 19702.5231 17417.7706 38750.8578 23725.2639 20222.1349 41569.1451 25804.4931 17471.2664 44754.2995 38826.3952 32594.1985 23715.4207 30380.3815 45542.7874 17498.3051 23621.2512 363406620 gdh Nitrogen Ammonification NA Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 4700.9389 2668.9145 4669.6587 4004.4604 4839.8104 3927.1935 3819.2222 4171.6287 5967.0235 5653.0011 2352.705 2950.181 2171.0591 7844.5579 257171494 chitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 7354.3425 14015.5115 13635.9098 2753.2034 5527.3003 4628.1442 6220.1743 5313.4911 86413.7364 5103.5154 14812.6295 23104.8226 23104.8226 3441.9106 9578.5417 4979.5267 184464.2627 11003.1191 3072.5274 8688.4495 8217.4653 12211.5264 4884.4773 6841.9214 31268.6432 4942.6267 7262.8689 2983.7931 4599.812 375108215 terc Metal Homeostasis Tellurium Detoxification Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 6601.5271 7554.8594 20020.3438 4357.1699 7813.2663 9323.6476 15865.8494 4490.1043 12226.5334 12226.5334 11750.5433 11527.7504 7389.9511 28132.0073 4118.1482 6773.5613 8325.0833 5048.2114 13113.8709 7910.3308 10611.1562 4373.6478 4307.1745 13814.6348 2676.9681 336436944 xylanase Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 11439.4041 15697.8711 13446.0686 9405.2985 11395.5598 14914.3391 6834.075 9697.4697 15723.2596 6135.3131 303194.3907 17743.9551 16880.9972 10108.2241 7664.2745 7664.2745 8735.6137 34277.8667 18995.8013 14181.2009 18266.3383 54817.9806 7326.3917 9317.6054 79213.8729 85896.1743 31495.5867 18054.3957 19555.3603 7651.2132 9991.0793 11692.7155 9285.6088 18166.7477 50880266 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8828.5778 10328.6821 22911.5003 3612.8248 5219.8343 4106.0301 8813.5014 7609.5508 6637.2283 391997.1224 26918.219 10511.6187 8206.0294 5767.3401 5767.3401 5829.7525 12771.5085 9688.4802 10580.5024 16154.9448 10121.3516 5790.4326 5381.8661 17489.801 13958.5477 17726.505 10559.6971 15305.9004 6385.889 6005.0686 6142.6492 4046.9018 8115.8284 10580386 endochitinase Carbon Cycling Carbon degradation Chitin Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 31232.1615 123030.4717 22226.3426 14063.002 18423.0754 14123.0815 11580.4224 18451.8245 22088.9481 55084.6845 26750.1439 48677.0259 543764.7679 32684.7993 24900.623 50458.3531 19376.1438 19376.1438 13336.6052 35325.2492 22388.8225 21956.9513 29003.9945 29231.8748 16931.5276 31720.646 20956.7181 20580.1656 46615.9536 25281.5115 35915.3434 46614.4635 22025.2994 30279.1974 25765.7439 31835.1816 209485857 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9203.1471 87139.9809 3249.594 4335.7085 3636.8783 7693.0691 3659.6683 6080.2851 4198.4472 5684.0045 3124.1376 3124.1376 5197.6632 12115.0053 3514.6718 5125.4456 35548.1878 6563.6171 5757.0806 3262.872 7113.2769 7418.1392 14973.241 6648.3953 3578.4642 4333.6576 6850.9479 9399.9546 9647.7651 377520260 cutinase Carbon Cycling Carbon degradation Cutin Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 49049.3692 49012.6086 29174.0763 92671.6813 139486.2679 30396.1423 53275.6836 51524.0828 19390.2669 46471.1504 59606.6596 42724.4454 1578421.6875 54832.511 52696.2506 74383.6831 40370.9269 40370.9269 48123.8206 45727.6025 36755.3613 59741.8565 39504.115 52340.0267 24061.7146 42258.4752 64819.396 21747.5433 107732.0969 43595.373 68877.5546 30633.0399 31186.663 50993.2175 22998.549 51765.1479 238598280 Dyp Organic Remediation halogenated compounds NA Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7475.7712 11039.8452 8872.3127 17141.4756 8615.0075 10534.1592 5230.6774 31364.1983 5983.611 3909.76545 109899.2418 4362.1982 5317.63435 5317.63435 4068.4005 11618.2635 7239.2645 5781.8474 5029.72755 5169.24295 3634.7604 5612.4924 6213.3895 3559.4137 15367.9237 3961.6947 12387.8944 13647.4193 3991.5479 4571.76375 5120.3164 6543.12 345635518 catechol Organic Remediation Aromatics Other aromatics Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 23504.5191 21755.2682 19285.9149 21892.8697 8600.4333 21091.6606 27838.5078 8694.0329 13686.3973 19258.3679 9552.8971 295569.2965 12607.1408 14409.5404 9708.9106 7825.4117 7825.4117 12868.2438 31345.3932 22866.4826 19900.4307 26818.5807 35333.4237 10409.003 11496.4684 18100.351 8246.5015 34795.9826 13956.8114 22227.1362 7927.0018 14920.003 12272.231 13987.7484 56560.9437 260849382 amyA Carbon Cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 181080.5628 23397.1693 45298.4213 67112.3367 38175.5734 71519.53 93236.151 142976.8532 115930.7977 37362.057 73059.0606 50371.4742 1023328.5336 45352.3221 168691.2044 105093.1083 35655.0713 35655.0713 56457.2228 133306.8787 47636.4663 65617.7667 65421.6865 116388.6705 293552.4416 28852.1931 56141.0592 52566.2461 167919.5408 60824.4013 81002.2679 176722.9001 35144.6916 39069.3322 33417.0979 90118.2862 151938418 tehb Metal Homeostasis Tellurium Detoxification Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4286.8673 3670.5855 3146.2613 3920.1009 4332.0296 98008.1859 6236.4522 5206.0747 6601.4128 7968.6844 7968.6844 3373.4679 10057.7435 9386.059 8273.4606 2458.6601 4461.4461 10103.8719 4107.8962 16639.0312 10404.3842 10884.6682 4870.2643 10167.6828 5693.4886 4173.9358 7028.7057 266630485 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 29111.1389 51116.458 20571.9596 7772.901 25080.7928 397908.3278 247398.0898 16510.9837 15183.5079 23957.7708 281587.794 12957.8312 39295.1724 24170.2686 30706.3756 30706.3756 7628.0216 31691.4401 32923.4777 19755.3723 20252.3581 17904.9155 13009.2485 13876.195 16396.0235 51683.2661 167453.0472 79688.8148 25271.0385 9650.2927 17504.389 20228.4288 16994.7574 26216.3722 220904627 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6847.5519 8193.4664 8570.6494 15523.9159 5597.6373 12830.8222 25197.0687 8965.1444 421662.1983 15310.2108 32475.0724 21427.3905 18393.17 18393.17 11357.7595 13990.1812 36291.437 25240.1842 403721.7044 12299.2393 8887.7112 7976.3712 19355.9508 9117.1385 48058.9418 9929.2257 11307.9503 4966.7041 9742.0065 30462.7042 75552.3623 13594.3674 22776471 chitinase Carbon Cycling Carbon degradation Chitin Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 12372.765 5820.4951 8848.1514 9938.3481 4329.7778 7457.4921 5467.0807 8414.6029 8135.1606 4391.7614 298925.116 9893.1763 12260.6652 5507.7072 5983.4182 5983.4182 5970.5816 12595.6299 10650.0429 7594.0636 12421.1557 10807.2135 5641.2772 5354.2285 12341.6559 3307.2813 25300.6556 8880.4984 18045.0764 3488.2491 5716.204 6632.0212 4391.1473 10949.5988 302885760 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 26451.1318 7597.6424 3495.6602 45820.291 4008.7087 3153.004 3561.2368 2649.3513 2649.3513 3765.1328 3566.0241 5853.7224 5439.9989 2885.5044 2596.8233 2734.2111 7141.2468 2335.2593 25990802 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 273024.3704 11935.4941 17069.766 73496.3785 6099.3125 6751.681 21067.8117 14636.577 16919.3638 17711.9116 11339.8017 1712727.0276 22872.0913 73843.0938 35143.5771 21997.9735 21997.9735 10771.2921 28375.7681 14270.5579 70086.6673 33018.9628 28867.792 20511.6306 27090.4849 18413.2571 16153.6822 36046.766 19871.8198 21986.1494 15982.0053 12298.6325 15313.9211 365162.7545 69014.7171 159181677 dehh109 Organic Remediation Chlorinated solvents NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 19225.9798 5957.6393 6793.8666 11113.6121 7543.8822 9267.2033 3215.6911 5492.5172 16937.064 4847.6304 94060.8223 10469.5523 10679.915 14284.78 4369.0445 4369.0445 7669.2235 14481.275 7658.8188 11444.2897 57092.4978 12017.9506 4752.2953 5468.3411 25760.6448 6381.4455 16191.2421 10573.9206 15010.5117 6054.1981 9015.579 6327.3174 6244.5385 10305.3316 27125563 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16016.2203 30114.8922 12659.4239 7593.0615 5341.2333 8215.6798 6988.0572 14594.7023 17577.5789 201802.1051 364770.316 34076.8691 18795.538 13303.8664 17838.6997 17838.6997 9077.2424 28175.2011 13461.5655 190032.5208 44273.5141 15135.5223 16209.4448 11706.9617 26284.0552 15656.3129 37386.4351 17604.4249 20226.5916 7103.2044 16717.8464 16935.3294 12525.6012 105790.0705 119025989 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 10219.2822 2718.6924 2529.0685 4763.6295 6946.3917 149217.2994 3818.4812 6565.7404 3144.5528 3144.5528 6315.4766 10203.2086 6947.7966 12049.3776 8412.8957 32572.9211 3572.8698 4147.3646 9365.143 4714.2446 19381.233 7766.3578 9661.5659 4327.5289 6173.97 6402.214 4776.0632 8791.5343 149926862 PRI Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 5763.8859 3578.2821 4268.6412 3042.987 13686.64 2489.9793 89497.0996 4831.312 2828.4523 2828.4523 3397.5176 8915.6016 5402.8671 6689.3264 9345.7017 5126.3208 2795.8724 4509.4748 7334.9078 4231.582 13943.5015 6429.2563 7913.4027 3347.1944 4019.2446 4901.605 3364.176 6691.8745 133919232 ben_bcla virulence NA NA Stigmatella aurantiaca Sg a15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 35022.7504 56466.3554 8564.0059 11312.2008 24136.6238 10221.3015 16165.1562 35247.7253 184449.5283 19009.7116 86413.1179 14735.4619 26952.1987 26952.1987 6308.0517 21402.766 10575.8761 7187.9028 13987.6335 19576.0931 6232.3407 18693.5509 16942.4872 9356.4479 16554.0249 23646.9971 15388.242 4725.9206 10193.8028 16204.6954 17085.0414 5633.1279 302589000 arsm Metal Homeostasis Arsenic Detoxification Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 24258.7571 9232.3279 6201.2257 18302.5317 8991.2662 2379.6636 6539.3249 13471.4326 12329.3024 12063.7583 36007.1174 163478.983 10432.4603 9607.4507 9212.8042 6689.2321 6689.2321 6756.1871 13502.3043 5626.0518 4976.3171 5620.1866 8628.2157 4244.7594 5744.048 9407.0117 18996.346 19248.2188 11202.0851 18436.058 5203.7814 4532.1414 8256.9541 3878.7489 40642966 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 8345.0563 3010.1528 3557.5105 2379.9894 3110.997 5082.2111 13095.6814 91309.1819 5738.2806 3302.8306 37818.6584 2534.9691 2534.9691 3703.3917 8827.524 4180.1662 5843.9304 119992.2153 2878.5474 2419.6643 7933.562 2007.1083 18722.3346 6030.2972 3290.1441 4014.5075 4875.6137 3528.9108 6055.5692 18034255 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum thermobenzoicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 71462.0568 15818.4547 237442.382 87924.977 43395.1177 12788.1018 25789.9606 28323.6944 19471.6633 39986.2859 38282.4539 23768.5828 681681.9118 37879.4252 45968.1095 30689.1042 18544.0219 18544.0219 23440.5402 52137.5928 28142.4836 615585.3954 44409.0569 59651.7811 27785.2245 32011.4789 35083.1215 18378.4787 56834.1143 22170.4513 62926.1073 16527.4616 64121.642 24843.9298 17021.3396 68800.4433 118470496 bend Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6463.0997 11112.2411 5494.9914 3254.5199 4544.402 4586.2775 42861.3806 3575.3551 83606.8288 13882.0572 3860.6171 7364.7115 7364.7115 3918.3028 10058.074 6437.5011 5608.0713 8322.816 3526.8322 10486.2433 7653.444 5352.372 20461.2745 5099.9364 11456.3553 6370.0146 6515.832 8047.0846 5352.4835 7409.526 302436838 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10292.5837 14253.4129 41070.8053 17129.8471 37700.3119 32819.1889 7939.6158 7787.6909 5501.9403 19381.3349 13018.4155 13146.8018 238779.2274 14077.6963 23334.9571 17446.2041 14611.4964 14611.4964 12550.6676 26452.5138 17895.9808 9714.7136 20685.2413 37471.8634 8121.5711 7993.5525 30041.112 11189.9019 40407.266 27912.6824 27363.6956 13082.5817 24117.816 12982.5519 7173.6091 19353.2325 387855060 b_lactamase Virulence Antibiotic resistance Degradation Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 412911.6474 11479.3917 15409.2585 16021.3838 5392.904 51200.4411 13055.6402 8280.8515 13827.8589 20010.8966 9079.6886 711544.5756 31053.4612 20446.5369 53801.2121 7139.687 7139.687 13466.7992 22200.8984 19323.3434 23841.198 164144.4968 31198.2314 19944.6371 10186.4178 20552.7943 10540.4145 38010.5792 18066.0472 28586.6021 10021.0848 14115.0466 22563.401 10528.6459 37962.8363 270276232 pula Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 4134.543 3479.6808 4716.8579 6297.664 3022.8376 7358.4674 5774.9957 6006.0572 4330.236 3593.1869 3282.2163 5333.9442 2201.9819 5889.1347 3273.4862 2936.4694 3812.1154 333488469 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8905.9309 9536.2762 4743.4806 4842.9254 4032.0963 9649.6978 8847.3331 9036.861 5560.9653 256131.8912 16011.1618 15364.0565 4021.4471 7091.9684 7091.9684 28621.5206 18110.5353 11722.319 7876.7514 9763.8487 9239.8697 7074.1495 6714.5291 12384.8829 5403.3884 128382.4266 7926.3138 16807.2165 6586.6032 7358.7019 8847.8012 9494.7122 10613.0782 227888950 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus johnsonii ATCC 33200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus johnsonii; 7018.8917 8108.2317 6011.1972 4652.3009 2311.5401 383447492 amyA Carbon Cycling Carbon degradation Starch Rothia aeria F0474 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia aeria; 6432.698 18556.7076 38902.6856 2338.3894 3612.9031 5332.8334 7912.012 89681.0395 7407.642 3741.1869 3741.1869 4637.6182 10081.7171 4312.2946 78466.5006 3332.4582 8513.9394 2525.8294 30277.0972 6094.306 12611.2571 18615.8763 5276.7794 5375.3445 291444923 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 8171.4487 11427.1515 9671.0845 10790.5981 2110.3564 2735.2885 5783.4742 8889.4277 3868.8261 4297.884 10357.0064 6035.8038 6035.8038 7111.7107 12879.7039 4905.6283 8228.7128 10300.4619 6290.7036 2330.6471 10183.7914 9640.1781 6126.5403 11887.7186 8063.4632 12624.9181 4578.624 5726.2121 10422.3713 4835.7476 8878.8 294816405 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 121735.0669 153993.6053 105979.8634 295626.383 45913.6179 68608.1582 122495.2249 107915.5161 93415.0856 97919.8446 94730.6347 1298642.9732 160686.5454 255690.668 295115.673 214476.3906 214476.3906 92187.3235 140475.1433 44166.3704 137833.8214 253181.5278 208643.2503 73160.9557 86138.4202 73766.8102 88458.8666 213391.0115 47246.081 107814.5297 116555.7157 82467.1294 100884.3154 69201.3907 80763.6695 386383823 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 11593.8734 9230.9805 6336.42 31516.1447 14614.708 19972.914 4640.6846 7473.0522 6866.1322 3327.234 116736.6633 5899.4281 7411.8789 11418.6465 6347.4339 6347.4339 4388.3206 18352.524 8157.0446 6729.3233 5588.8209 10284.3568 3223.7355 6493.3385 8974.0484 4851.9372 45650.6189 9729.0572 9390.9379 2955.239 9587.0936 8461.4555 3771.9754 6097.4694 323365350 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4991.6264 4277.5894 13296.0184 6514.6564 4560.3116 2155.6234 110167910 mer Metal Homeostasis Mercury Detoxification Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 12968.5071 15884.7067 19776.9427 13277.7269 68588.4276 18402.8795 8356.4482 23308.0275 11062.3668 146890.966 10254.2806 22971.4031 10916.3245 6419.928 6419.928 11185.1915 21239.5077 35928.6881 25669.316 66979.0987 7578.2641 9480.8855 15560.026 24537.7409 12543.7418 26913.5463 23781.683 13738.1127 8240.9938 10324.1997 79820.6399 9183.8853 15388.0048 257484173 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 14802.9535 3148.4991 3722.6786 3477.2062 3421.3294 2155.3625 2155.3625 7512.857 8442.788 8121.3249 6223.3821 3614.1204 3030.4712 2123.9404 71273718 mnp Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 355887.1612 71862.1239 231045.4011 109316.381 81203.5778 61392.0998 230371.3895 83044.546 301678.2289 144618.1352 98974.8642 1610886.2964 198093.5399 143185.4605 326791.1411 228993.3741 228993.3741 134440.0606 228716.7106 74769.2943 328943.1076 165242.989 149549.4269 125451.9074 100518.5125 145202.9118 140841.9151 374008.3855 92660.2845 305363.8787 124634.8805 123199.4422 122938.1953 108169.2367 173571.5219 56798485 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 15115.0426 23485.7189 19305.8787 14719.0484 16473.767 7393.2233 12267.5623 30033.3841 43217.5237 21867.9958 11931.7022 176930.667 15670.2547 14515.3886 10155.8137 45926.5373 45926.5373 9652.7544 17878.53 11157.2314 25091.8762 15589.1945 9502.9232 9627.9282 8539.6443 14715.8614 9382.034 25371.1047 12930.2343 34927.6886 6064.6457 11375.0716 45177.6917 10936.5037 83375.3939 375142027 linb Organic Remediation Pesticides related compound NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7312.5196 90276.3898 5922.2946 9917.838 8205.8204 3096.8715 5586.2408 5160.3302 238753108 ppk Phosphorus Polyphosphate synthesis NA Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 11310.317 4479.7048 11267.0491 4899.6849 6212.1271 3157.4976 6894.4073 6974.0357 71058.1944 4586.1895 10443.4777 6192.8706 3285.5927 3285.5927 10872.3726 6017.0106 4537.3969 9924.491 7099.6319 2345.6877 7050.6416 7135.8698 2876.8377 8901.4872 11608.9259 6299.7556 3327.8587 3983.0695 3734.845 3270.5075 8689.5784 87134243 one_ring_12diox Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 50871.6361 260623.9802 22997.4129 24766.7395 22757.6606 8855.9163 39268.7246 74362.1074 25244.6511 34421.929 35848.7388 37017.546 899698.8226 46033.3068 54722.6362 57000.2193 77153.9501 77153.9501 22333.3937 65399.8842 33584.4396 45992.8214 98442.6518 46656.1984 30125.6378 22755.5699 45870.0246 30442.1392 104671.9293 102220.7912 43500.0277 17254.1888 39766.6719 43056.1703 49629.8478 104887.1194 303293115 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 7276.4629 16457.9598 2171.6291 6112.7101 3127.1921 4388.5011 11449.3811 5462.7149 5748.7122 22791.4479 23479.6445 23479.6445 3323.9593 7954.1082 5335.0306 6041.6854 4454.5137 45640.8978 6473.999 7647.7926 11969.2466 10645.2173 11564.1583 3631.304 17868.4722 7044.0427 14067.5751 7760.4901 361055358 mer Metal Homeostasis Mercury Detoxification Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 4125.5881 17339.1108 13950.5763 4837.9488 3345.4672 7262.3321 10499.1984 3337.8927 4825.0396 5818.1097 7753.4274 6567.8897 5463.095 12786.9428 6395.6886 261418952 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5665.5236 3197.2236 6533.2778 10551.6253 12449.2382 6869.9157 7568.2708 250225.657 7559.3248 6003.636 6561.295 4266.5457 4266.5457 3676.0598 13547.6729 12120.6089 6087.0034 9538.8934 10454.0331 4896.4625 6725.3991 8439.147 5409.247 12490.737 9672.3431 11452.0507 11994.5388 5793.819 23921.0112 3755.5543 6542.2699 379988525 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4358.6255 4877.1202 3243.5688 3219.9598 4203.1626 6530.39 3104.5046 130320.3422 6509.4151 6338.1528 5030.6269 4393.0838 4393.0838 4911.0319 10744.0227 6012.8546 6375.6429 5380.8933 4444.1909 3914.0137 3321.5805 8558.9843 2610.9121 17096.9587 5282.8015 10166.6965 3607.0222 3794.2522 5319.8024 2726.4756 6490.0067 307946961 tktA Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 47467.398 12285.2442 16195.011 7327.4743 62946.9919 9022.0054 10467.8047 13031.8796 9850.4961 200779.5981 9467.45 22522.9063 28742.9049 9715.788 9715.788 17083.9371 36516.9043 20503.7579 13026.0426 12245.8003 20160.966 7038.1549 6127.7686 18840.7561 55825.851 50515.8747 17235.0396 20810.0735 12919.4913 12107.3744 10705.5706 20801.2692 31970.2092 224472732 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 10784.0053 25419.5407 21984.3249 2354.0188 8946.3275 5612.2343 3727.7849 3727.7849 7236.8197 18432.2003 3679.5716 2966.5839 13843.3761 30060.9033 7293.8823 8817.6126 3551.1198 6895.562 157679004 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8824.0673 6757.2358 34657.6209 10144.0982 5974.3184 9906.8798 9344.1023 5481.8102 6654.7482 9812.0676 7803.236 492996.421 5888.8657 9701.4379 6791.4927 7097.2944 7097.2944 8151.3636 55863.4027 8341.6868 7234.5695 18085.8467 12275.1989 7457.8872 7604.4261 15832.872 61401.1301 39719.064 12173.3381 12969.8753 7646.7165 9010.5773 14967.0047 7692.553 30235.1355 167586903 atzb Organic Remediation Herbicides related compound NA Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 388656.3873 91985.5908 102314.6191 59830.3026 70553.5935 62629.8619 146970.5436 231443.2799 97255.0888 152193.9523 232541.7602 180725.4056 3369659.3637 136930.8745 407424.5608 341474.6756 175423.5582 175423.5582 60102.3582 239484.6323 155851.3773 150010.1843 1153811.427 804603.379 112785.6505 143130.7502 229855.0286 185983.0677 382175.7152 164153.8022 208402.8344 205235.0908 223602.0335 151529.7702 162065.0791 393244.4678 270047914 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Lentinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae; 186122.251 13187.3138 49000.2912 10071.3034 14308.15065 10226.9784 12660.8358 10106.431 17300.5498 17044.3194 27105.905 2564616.5066 18916.4718 23456.0214 31814.0865 163936.8768 45763.6737 38129.1954 29832.6235 12075.3982 21693.8657 24840.65 18503.7635 79001.4062 161380.7258 68267.0226 19230.7186 23081.1952 21343.9786 283593.9702 160917441 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20201.6554 32269.6062 10494.7328 13405.2369 5282.5266 26169.8103 35315.9241 5067.8141 6027.5259 41544.5611 18374.4834 884716.8391 9664.7965 181900.6987 17028.6174 21738.6558 21738.6558 6741.0318 27315.2632 9056.8566 22729.2501 11939.4992 14770.5078 7418.1042 11575.9623 22853.5574 5491.0531 31810.7532 13996.2836 12802.8111 14871.49 11515.8697 14846.8151 18145.9445 39761.9356 62120299 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5498.0287 5771.3422 3422.0776 7705.8818 4071.2355 6466.5213 5658.9937 2168.4724 136678.6893 9360.7904 6358.3302 1909.7308 1909.7308 6302.0545 12558.8468 9118.1287 8206.1475 5870.6382 6872.6409 3750.3848 4685.4296 11441.1784 5189.6093 17302.4921 9509.494 12043.0536 6343.1462 5290.653 6589.935 4068.944 13280.3796 319798033 mer Metal Homeostasis Mercury Detoxification mine drainage metagenome 18703.1344 230691.2773 18942.383 9685.5941 8499.1041 4977.2636 11784.7864 9286.1175 11257.6259 13421.3112 19780.1792 156279.6901 13764.1958 20135.2516 12745.8012 16690.3159 16690.3159 12483.2759 19268.0536 11495.701 16506.098 27801.4068 21501.1072 17655.9651 16152.9474 12145.2299 13176.1325 23199.51 17817.6968 23395.3338 5462.2691 16729.0219 57708.617 20528.1349 32117.3662 320534421 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 90755.1033 11045.3106 28099.1498 12704.7472 40007.9636 18474.1409 53033.7642 42927.2782 65238.5805 31884.4221 82903.0174 63483.8173 1162743.3151 39756.9448 67871.1526 272467.6817 60957.2269 60957.2269 58106.998 143124.9886 46572.2091 97847.2468 51642.8897 74261.4343 44396.5296 37645.9013 59120.851 100824.752 130095.9734 78746.3584 94057.8114 39399.1557 44326.7351 53238.8586 57531.31 35510.7532 260886913 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 9218.5749 4648.4234 44234.8356 2318.8072 3624.3661 7335.994 8294.3173 6054.2737 7970.9469 68949.9065 6073.7417 5993.7418 9875.5971 4677.1645 4677.1645 2731.1145 16441.1832 7932.3397 8448.1741 10953.1407 6654.9058 6301.3687 10928.0232 8281.0289 15342.0296 11030.3197 14324.4314 5998.8934 16679.2751 6172.5746 6149.5736 4847.0005 319894937 ppk Phosphorus Polyphosphate synthesis NA mine drainage metagenome 227184.2457 39970.2915 203748.3098 105614.4467 157591.3713 10139.3738 79127.1765 150631.4655 69484.8785 99148.8291 181908.4899 149081.9832 5087852.5695 183098.3231 143138.3643 171173.8276 116343.916 116343.916 117453.0579 154530.363 78291.9594 98800.898 159966.0631 104205.4758 86102.7293 207333.2089 176110.6601 148949.8766 286933.1355 263187.5471 328975.8848 74587.133 76874.5324 162667.609 92492.9372 93999.6734 254946784 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 21374.192 16810.4231 11163.4627 12034.7273 29613.98 13897.4363 17543.2869 20075.9237 13930.5338 531929.3497 22267.4714 28971.7402 20435.6302 15526.1145 15526.1145 10711.6051 35143.805 35780.5487 69926.9518 31689.13 18240.6986 13210.9419 53371.2139 17624.6431 13901.072 40429.934 20414.2955 32871.1373 10356.5664 15257.5938 16161.8062 14040.0667 23429.8911 16506235 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 10067.5488 11393.0931 3342.264 2679.9937 3066.902 832156.183 2240.3989 2240.3989 7941.4346 11311.5065 3131.4485 359761676 nirs Nitrogen Denitrification NA Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 90174.971 11577.2777 140784.9549 36128.8859 67552.6536 37719.1559 132759.5341 70875.9781 51119.4606 42042.9283 81099.9026 46113.7522 653179.0185 60523.5097 44988.2785 74436.2733 79896.4584 79896.4584 36721.4744 87909.8407 38202.3748 35462.9216 59457.4818 47510.8999 25786.4705 29370.5185 54246.5527 56002.7677 114437.5532 57647.9533 63783.5739 32622.9421 61606.8245 32309.2973 46937.2813 121712.9943 349785611 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 139297.1247 24397.3501 14032.4447 38727.9093 12684.8534 12676.9273 11657.2745 13252.6629 13805.0305 85364.3332 27785.9872 18972.2383 68708.3191 25379.0598 25379.0598 15601.415 22970.2537 10850.119 45762.6556 23387.5616 13411.6161 18967.3411 20231.2049 31451.3873 16956.6179 35871.7588 25373.3345 17578.4242 6809.0447 21159.4897 15150.9969 14203.5705 20014.6189 27376338 phn Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5699.3238 7459.1502 2013.8368 2278.0175 3465.6285 4071.3982 3049.2232 4092.4179 3206.839 3206.839 92429.8377 5907.653 3546.6625 6119.1894 4951.8195 2908.6095 11070.5947 3335.6514 13051.6421 4503.6756 7927.1255 2858.4034 2741.996 19489.2936 125745191 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 3802.5121 2092.8337 2092.8337 84691156 amyA Carbon Cycling Carbon degradation Starch Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 97646.3538 90603.8633 37483.1898 170129.9499 24475.7075 58875.4443 111876.871 73200.3709 85373.8109 127816.254 58513.0452 1359310.3133 101923.1955 84157.224 89298.0455 111425.3554 111425.3554 54175.0148 98555.0201 71345.3347 118638.6369 129630.9185 791020.4432 67611.1755 112301.785 79215.0475 66963.9124 334913.8144 118199.758 118259.9599 63454.0188 75238.6643 99145.4918 43730.8252 114998.2826 365899024 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8258.9391 8474.3055 8730.1229 13230.593 12679.4603 5264.1673 4455.492 8642.3366 9608.9864 6532.0142 106663.726 10578.9412 9283.7433 29427.0499 8800.9971 8800.9971 4500.6382 10490.1693 8739.582 14210.4718 12272.7519 10291.8941 4566.446 6086.5205 49129.7983 3917.8669 15536.0025 44232.9602 13898.3788 6085.1153 8352.5896 9227.421 5079.6948 9759.217 391880284 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 14799.9577 5055.2854 12038.22045 3607.6764 3417.4553 8880.7417 9635.1298 10478720.0323 7483.3528 4316.8416 7106.47 7106.47 15060.3244 4093.5821 6532.8442 3856.7864 4082.3201 5028.6433 4211.7842 11886.9536 5187.076 6676.8627 7278.6896 4645.2629 8266.0741 157804872 aps_apra Sulfur adenylylsulfate reductase NA Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 6910.5444 2794.4666 2719.9443 4409.2054 5348.5024 12673.7796 6061.1779 5420.2636 4114.8652 8952.943 9346.6383 9346.6383 17630.2945 7731.934 18059.1757 6138.4351 2823.8307 4362.8405 3284.5614 12884.8238 8907.0137 7671.2712 2709.3811 26731.6893 5629.3257 3946.5842 70992785 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 8270.6277 6196.991 9174.3656 5194.9395 3964.8557 3429.9648 5981.9617 7141.2971 3829.1709 129994.7644 7359.6684 6295.2288 4355.79 6564.7028 6564.7028 4641.8859 11756.1024 8435.3591 7063.2857 7713.3337 7999.1871 4021.4957 3648.956 11733.946 3469.7641 16722.4207 8108.5252 10600.1776 4334.7751 6430.0834 5663.9719 3637.3214 14080.6434 385883560 amyA Carbon Cycling Carbon degradation Starch Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 81468.7327 536736.0582 13950.8092 51267.0742 34372.5602 14395.8845 29048.7404 99684.8497 17940.4754 213911.4975 17187.7646 983912.0573 19265.272 17702.8877 32480.2234 27448.656 27448.656 11764.8998 31483.8659 18418.9446 16926.8132 27312.0321 15953.9135 18228.1885 17526.1581 31520.9136 9054.8563 64837.1365 44361.0212 28543.9524 13596.8233 16863.3992 45914.4754 9470.0005 13390.8531 323366006 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 12677.1346 13461.9802 42472.4957 4632.3974 7533.6694 3729.2853 14480.019 8889.4155 5148.3642 129838.0696 11231.5265 7662.2837 6473.6051 4305.8021 4305.8021 6392.8228 14604.1203 11881.6138 9438.3818 12171.0931 15043.4977 5063.7971 15384.5106 13461.686 6793.9126 40210.1734 18742.0094 26647.736 4316.1612 10423.8518 16868.4008 7344.6705 28457.503 214031314 FBPase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8691.9494 40344.0899 16924.9007 4530.9063 4495.1435 5539.3157 8001.3646 3924.6853 21994.806 7568.4997 88617.6648 12843.1987 7244.2911 9405.668 3927.9353 3927.9353 3291.2353 14718.9002 5156.4027 12761.2067 5490.3118 4137.9255 12717.678 5267.3612 30853.6892 22009.5043 9108.7272 6819.8615 4546.1432 6177.063 9101.4134 373460471 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 141226.0785 69294.3269 59860.9777 24819.3494 14693.0929 182169.5003 62874.4755 37833.8181 35605.1492 68194.2793 105866.9752 5725730.5224 116320.7979 28996.62 163489.2279 62494.6066 62494.6066 30061.7218 101874.3855 40251.5941 20742.9399 97420.4039 23623.6836 31455.3769 26056.3482 737462.0443 40586.7655 126175.5958 87111.6759 100047.837 29287.3062 74901.6779 68408.4688 72413.9393 190397.5065 90420017 FBPase Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 11162.5176 3762.7467 91791360 chnd Organic Remediation Other Hydrocarbons NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 15435.6807 31643.3677 6449.2776 6695.2469 25250.8965 3318.4303 8654.4343 8849.1171 14931.4542 16972.8813 99037.826 8234.5867 13919.3858 13086.401 9491.0221 9491.0221 6806.6291 16717.6072 9579.7603 13576.0306 22318.502 11205.5182 10169.8388 7604.5402 11695.9906 8341.4119 25289.525 8967.5797 12883.9938 3941.406 12744.5292 13408.597 9410.0896 219525.7078 284034582 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 57732.5173 19493.1702 8839.1657 85698.5085 12429.3014 13559.6188 10437.5382 8902.3961 28466.4387 16388.7991 421276.0622 26415.3336 42119.0902 27508.8229 33739.9078 33739.9078 17281.0593 22136.6142 23000.7626 150308.0898 32718.6117 18257.0173 31412.6035 17400.1128 37389.4086 22690.7045 43494.6634 41034.493 39393.8007 17770.0254 14700.5203 32781.1063 16314.7911 19766.2361 381374037 tehb Metal Homeostasis Tellurium Detoxification Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 9503.2231 9591.112 5379.5835 8016.8461 4874.1143 39527.0325 11782.6266 4494.7806 96581.5352 11841.8003 10093.5682 5355.6276 3884.8808 3884.8808 10444.1447 12665.3868 10712.6786 12048.1436 14874.75 8649.5448 4282.7033 6880.7521 11365.1751 7727.0104 21493.6234 18903.7047 12670.4759 4208.2917 7325.3984 6907.5223 7924.0191 29244.7163 94984793 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 30487.0289 14830.7124 22076.8478 12256.5261 18066.916 6196.9243 57571.3902 33730.2917 20679.6196 19741.8587 38748.2753 15216.214 1317427.8173 16106.9805 12264.0631 10611.6116 7753.3087 7753.3087 11321.8202 28433.1463 20060.5743 11331.0001 33611.9789 39737.3272 9660.7797 22130.2732 32816.576 12192.1028 69307.1194 71217.146 23835.1587 12391.3363 25259.6284 16114.937 20919.1286 26521.2277 373954971 xylanase Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 5872.1608 6072.7426 19239.6975 4146.1096 8775.0688 2751.8424 7946.2332 15091.6561 6309.1961 148025.936 9023.9119 11511.2973 6079.6892 4546.1555 4546.1555 7515.4638 41090.5693 12123.2974 11273.2545 11168.8865 27851.5934 8925.8737 6441.8243 12100.5386 14762.2217 26221.5269 10431.7866 22922.6632 7704.8645 10515.8669 9610.3378 29035.6417 9934.8908 150274620 amyA Carbon Cycling Carbon degradation Starch Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 6491.0884 62105.8479 5697.654 12529.9793 40803.2396 2532.0821 7164.3149 5831.0963 10866.5248 201137.6625 6142.4715 9738.442 7893.0911 4477.3445 4477.3445 2900.2837 7260.1351 5900.6853 11394.4803 14428.2701 5450.2132 3852.1195 4130.7841 9471.468 5248.8655 15240.6328 14869.2036 14080.8155 5775.334 6202.1634 8814.3489 3424.0102 6124.0802 397735673 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10055.2309 10714.3661 11909.9154 56297.8938 13704.0427 12707.3122 25017.7595 12231.4491 10366.6121 8572.8201 181599.2148 8529.662 11135.3393 22016.3897 11739.3216 11739.3216 12422.0647 20441.0745 19586.7946 9181.9867 10023.2697 7965.2819 6537.4965 8752.7834 17636.2263 16901.7493 32447.5182 148638.4699 15549.4481 24944.9621 10805.3771 11274.3241 6423.2271 10037.6838 353200490 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 23002.5754 16712.662 17129.6568 28446.3445 56130.621 4937.7414 10107.4886 13860.1149 10833.3508 14420.7289 30230.0776 15506.491 680136.3067 35456.2696 21269.101 23119.5439 15049.7156 15049.7156 14315.3698 34899.5711 24642.1664 21568.3415 39845.5676 79064.2948 9251.3884 10594.5391 28762.1668 11571.4071 43231.0316 15294.4857 25663.631 13088.1524 21093.9374 20016.1923 7309.5002 28883.8578 312960146 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 103418.5676 22923.9896 81098.9634 6820.985 15668.4102 28073.1652 52893.712 11844.8238 71153.4309 37535.3988 724187.6843 28335.3855 34238.7794 41699.3259 22850.7155 22850.7155 17441.9761 62915.7414 20217.7807 74485.7104 152653.2102 22747.3535 37200.7355 33859.0581 19655.6591 114815.7016 78740.126 29729.4688 102317.0463 13305.1704 31714.5106 40091.1777 21238.7206 56278.6636 359819840 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 9860.2143 5219.3169 17787.0079 18260.043 3598.1527 129494.2307 7158.9417 4821.5119 7638.5279 303328.0008 23409.9457 7798.8543 5075.1361 4669.6403 4669.6403 3746.2296 7422.2275 4641.4347 11466.5949 3501.336 3698.8934 17843.5723 2552.6897 11474.0678 9735.7555 17267.3274 3728.7338 4695.7294 3073.6616 2436.4004 121712381 amyA Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 60552.5249 15931.1033 26084.0178 33219.1703 11399.0252 8790.0416 31089.0639 13837.2655 34955.3325 17548.3564 32440.5125 11779.7037 185316.3025 103437.484 24172.3528 116048.7886 18194.0807 18194.0807 15089.05 52869.7863 16733.9004 16941.1307 52203.9502 37724.627 33291.7868 14062.8101 24786.363 38808.9863 44731.8336 20076.8476 27221.3876 18053.7286 43078.4399 41559.2998 23225.7796 24071.3916 381397807 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 38175.3998 8358.7299 10046.5623 13750.2353 3707.7565 7806.5364 25059.6073 9834.3069 2586216.3553 6360.2501 12938.0741 13767.8946 13023.3146 13023.3146 5808.4082 25366.4074 7347.7711 14528.5203 18210.2754 17031.725 14258.3632 6866.8866 13689.8231 15931.5524 35433.8191 24043.5405 14669.3155 5838.7585 16502.9724 12652.7346 10390.4478 15936.6717 113939640 xyla Carbon Cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 4060.353 7736.8983 2237.7687 2959.6103 4527691.2405 3839.4382 4548.888 12943.024 12943.024 3421.8011 13923.1839 4788.6098 7750.0985 15309.5509 13668.8033 74056854 mer Metal Homeostasis Mercury Detoxification Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 63772.0116 3108.165 3108.165 157322509 cmci Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 8502.8005 8634.9656 2321.7859 2885.4854 2028.5881 4335.4729 4812.8989 2467.6341 106303.4293 4090.4967 4673.4606 2781.1408 2781.1408 4190.8268 8897.0984 5565.7667 9053.4732 6729.5579 12505.0677 2765.0206 3442.5687 8707.0046 2858.1314 11235.0833 4009.708 10139.4062 1775.8531 5165.1755 5304.0766 3559.0286 10173.9877 374313417 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 18535.2547 7729.5962 13320.8519 4646.2666 3330.1875 6530.2515 6488.0299 8784.5671 4487.2108 251567.6771 8928.6428 8380.2554 14999.0987 4159.8934 4159.8934 5156.8235 19223.3223 9922.189 9764.2286 9632.6704 30186.3596 4766.4986 5032.2253 11131.7118 11111.5583 23316.8314 14224.3113 17117.4052 4997.8079 7022.5017 6560.7787 5718.9335 13498.5924 73749251 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 4859.3004 5475.2228 11542.8842 5342.5032 252495.5425 2539.4274 10009.9952 4783.3182 3134.7677 92111.1722 7714.0776 6941.7389 5001.9268 3170.7593 3170.7593 3572.7819 13532.6106 9675.579 6134.3567 10261.5212 3222.9131 18208.4392 12934.099 234464.3957 12804.5344 10595.8748 11587.1851 3055.8002 4672.9347 23737.6594 57847.5786 9453.753 239628858 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 152661.8551 61828.9622 15840.5049 142920.4466 33616.352 18799.2777 82391.5411 24197.0501 61319.4411 109586.3522 75969.479 1469248.2062 83583.097 99785.6133 129740.6766 69310.8147 69310.8147 40492.1045 118512.6779 112565.952 100912.6069 299314.8127 66928.5852 140546.2168 146268.7963 78087.9661 76543.1372 438318.39 118752.3328 94174.9798 49639.412 92774.6651 111550.7305 91675.5347 228363.7603 76875211 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 5877.3453 17062.4416 5055.5571 13769.3371 12313.8329 11617.0458 8538.8279 14539.6534 7185.3983 5418.3666 12132.5052 15596.081 15596.081 4052.1063 27138.0774 11514.2289 5523.3805 6971.9615 1889395.9175 7460.5864 5612.2664 6057.4855 6605.9341 80323.8975 20960.7277 6221.4468 3921.0527 5303.2268 6151.8455 23411.7247 10928.4762 251771534 glucoamylase Carbon Cycling Carbon degradation Starch Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 20455.0787 13795.2246 18515.145 21373.1915 9764.4797 13611.1798 13626.8124 8666.3585 15687.0192 17570.4724 9314.2987 513784.4544 21125.7563 16714.9179 17397.0182 9446.5957 9446.5957 15767.1091 26212.9879 18238.3355 21284.6971 26034.9368 32239.2733 12445.1734 9781.9728 25499.1179 8490.6765 46584.0748 7315.1069 23956.0522 9761.5035 12343.001 18128.441 10739.8771 33893.889 229808987 amyA Carbon Cycling Carbon degradation Starch Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 17340.3442 5284.3157 35903.3451 10409.35 6847.6924 24452.1811 6021.5959 10334.9394 41068.9481 16952.182 257069.5956 7777.4497 6817.8659 11180.9206 8543.444 8543.444 4776.2525 40424.8738 12584.1879 10571.4724 10508.1883 12821.6375 16382.7975 19187.693 18609.3274 12291.0497 80497.9321 22805.8591 15230.1598 5666.5837 10650.3417 13510.6134 11672.4135 11487.0952 67985209 urec Nitrogen Ammonification NA Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 53800.3233 18907.2571 97554.5753 11124.1971 37395.2797 45023.4148 70237.9577 65680.4553 28994.6262 35739.1671 36010.5363 33733.6317 894643.0894 762721.7218 35629.5476 32874.8543 85158.1965 85158.1965 49239.9875 160620.2802 22772.2622 49377.9254 150796.5414 42779.9112 28386.6417 55190.51 169191.0507 28259.2733 65137.2911 65329.2347 46114.426 16742.8014 62216.554 95274.7945 39121.2877 46615.173 284165251 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 10768.8508 64267.6715 2120.9154 6027.5858 4335.8761 11303.1801 28279.4399 10748.1297 10748.1297 4002.5171 50879.3165 12942.9157 8604.3986 7305.31 5288.3947 11469.0773 12273.6579 15179.2832 4457.5534 16355.584 27752.4992 4640.3927 17075.5111 84489.0792 6389.627 291529967 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium siraeum 70/3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 4590.0211 99305.8327 3399.1339 2793.0299 5113.7307 5299.0298 60068.2027 7734.5535 6037.2086 35905.9854 17091.9384 17091.9384 3253.3219 6054.5498 3608.0168 2770.0947 7794.5243 2617.1459 16656.5092 5751.1647 7022.7819 3106.5654 5472.147 9559.562 2509.0252 87281229 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14178.9093 6883.7659 13106.7084 13709.7436 6622.4098 12094.1567 5205.8186 17944.0681 25116.3602 6392.131 159572.1093 28433.7205 15652.298 10231.0029 6963.7442 6963.7442 4695.421 20010.0194 16008.4169 9677.4437 7996.8251 9828.0389 4855.8162 8456.0557 12799.2626 6310.856 53135.7303 10598.0069 10826.9086 19707.3725 5782.7323 11176.9607 6275.4527 20342.8703 62003537 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 328353.6015 885093.4549 169019.8701 176111.3848 631949.4007 115661.9447 335095.6846 445936.9581 207906.3409 188630.6233 121745.133 6146968.5408 241441.0079 188225.2987 270623.1917 179226.9904 179226.9904 129466.7741 196409.332 112847.824 465464.38 332663.5761 350595.8433 104798.3731 102113.5536 162379.2107 110012.0269 331360.2139 174030.9782 147981.4232 152105.9584 145086.6966 150147.0633 108841.1548 235935.0462 294323508 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 32269.1444 9799.5719 280632.983 39086.7164 11749.1289 8275.4352 11827.9425 39705.7361 29967.301 37717.0712 44328.895 245211.0125 32678.6065 22852.2535 23111.059 26306.1613 26306.1613 20691.8502 38338.0523 16880.3579 9292.0283 19304.2202 36104.9698 11071.4046 11822.3239 35520.5309 14073.0959 135235.5406 26065.3646 54586.7583 23057.5359 21525.1011 22144.5298 12268.6887 18959.6814 37925853 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18736.6169 35477.7324 37738.1637 29683.4538 11500.4918 21821.9638 15838.478 8753.5245 18889.715 22332.1756 17301.3005 339610.6971 27469.1947 14882.2234 28936.6153 7799.2374 7799.2374 12907.5294 26678.6543 22590.7711 24406.4749 21808.0024 24305.4144 13754.3584 7897.8068 26313.7899 12011.6679 45323.2667 24050.8431 29925.378 9254.2074 13753.463 18533.2666 110917.7698 22201.0813 220927400 soxY Sulfur Sulfur Oxidation NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 125494.7264 1827892.9788 41678.0023 34354.7251 115040.3047 33873.9205 28768.0506 74947.4855 227239.4133 70165.541 96721.7811 67036.6307 1184158.0767 90714.3229 179910.6764 216370.6123 111042.4704 111042.4704 38464.7308 125368.1211 37254.6966 84258.3468 66194.4352 96736.0237 52130.4186 76281.6635 90075.6323 51257.7576 152255.4658 54523.8482 91864.2256 27024.0531 43417.467 44911.3508 57482.2209 149750.0978 7861554 tktA Carbon Cycling Carbon fixation Calvin cycle Hydrogenophilus thermoluteolus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Hydrogenophilus; 8936.3922 243974.4458 3516.5958 8864.6142 6240.813 12908.4315 9555.2481 9896.0746 89448.6064 5556.7745 10523.4891 9489.3282 9489.3282 4928.423 13232.2309 9046.9677 10357.0967 21707.7381 6991.7968 3639.5933 4330.3222 8443.2015 4337.6327 11560.1116 10054.0773 9075.1969 4749.8397 4857.9793 5954.8798 3722.1554 12567.5199 372279281 FBPase Carbon Cycling Carbon fixation Calvin cycle Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 6536.2076 27974.6192 9444.672 4981.1301 4834.7023 5709.7164 2269.2104 6893.658 11200.0886 7277.9992 265808.1783 10350.9102 12393.363 6363.9512 4343.1517 4343.1517 6827.2065 19446.2567 8147.3125 3879.0436 5900.6729 8150.0181 4974.8621 3792.7606 11390.3681 3646.97 17717.9948 13173.3972 14024.6152 2828.5403 5050.6678 7066.8145 3650.2005 7407.2035 46139257 rgl Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 5549.8641 6509.4152 14705.2996 14534.8405 13100.7635 8772.7155 5534.9197 14002.3228 39281.3675 71852.692 4117.9553 7275.7738 6892.8573 5224.1641 5224.1641 2880.6963 9366.4529 4577.7803 44297.9007 14387.3794 4093.9215 10808.1407 6298.7055 33172.5342 8374.2065 13905.7772 8942.3801 32004.1383 8973.2797 4605.0267 339279413 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6797.7797 21126.915 22139.2733 2834.632 5817.9045 6548.4275 4968.0399 6445.4924 53867.0633 3373.714 6395.4576 6279.1698 6279.1698 3393.3512 14870.4082 3329.6565 7513.456 6600.9593 4169.0486 6551.1857 6948.3802 5359.7783 11400.0255 7100.7838 12514.4456 1757.4122 5345.9704 15596.4642 117926988 SoxA Sulfur Sulfur Oxidation NA Magnetococcus marinus MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 5223.5075 3659.3618 13624.3174 8413.8075 108452.9681 5244.1463 2360.7055 2360.7055 7871.2328 6695.5362 6295.9104 4743.6276 3870.604 2745.9529 5835.3783 6565.1693 3012.0806 5910.0145 33594989 one_ring_12diox Organic Remediation Aromatics Other aromatics Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 16338.7795 12094.3321 7354.3641 8999.9042 7972.0123 7660.1886 5665.3135 7989.5855 12787.6954 7147.2211 192938.9182 10199.6306 8981.144 6453.456 5675.3829 5675.3829 17322.9561 14429.0822 10095.509 9106.6138 23309.8135 32452.2839 7492.4061 7072.3238 15410.135 6860.4356 25545.0071 14163.0481 15799.8227 7246.3057 8928.2742 8390.302 7011.506 12253.8941 86748076 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 25029.2446 8874.3528 31230.1338 21496.027 18798.001 11486.2057 41538.9622 8822.8868 13305.0169 232083.4295 14335.0809 1848980.7201 18824.4904 21454.32 22390.5796 13404.0888 13404.0888 11061.8924 24201.5192 16300.4195 14365.0493 28356.5522 48284.6369 14665.2967 32288.767 46687.5906 18815.3151 25578.5436 11973.244 47768.6274 9097.7329 17962.6945 23107.5273 35616.9846 16067.9532 409722822 alkk Organic Remediation Others NA Halococcus hamelinensis 100A6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halococcus;species:Halococcus hamelinensis; 110336.6333 5277.7416 7918.2162 15923.6402 407204385 catb Organic Remediation Aromatics BTEX and related aromatics Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 9323.3588 9756.9534 28589.8842 7537.6958 107562.8335 33724.5912 8967.0982 6485.6065 6678.1743 5240.8937 150417.1968 7536.7776 14325.3005 7437.8147 8850.6548 8850.6548 8591.1126 17968.9857 7250.3115 54806.4314 7466.7566 10132.7368 8995.5907 12129.5969 8625.117 43620.2028 30375.6801 13214.9756 14633.1483 8525.2249 7202.4314 9270.7006 5006.6867 10699.8218 358240961 amyA Carbon Cycling Carbon degradation Starch Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 12163.6612 10329.1284 8113.1787 15392.3913 7305.1325 5944.4109 64923.6912 9348.2082 15018.9448 11014.9844 185875.5017 6237.1156 4274.4936 2857.6669 2857.6669 5752.5725 14637.285 13583.6267 10411.0593 20269.2097 8153.8754 21536.9938 5671.0368 11713.9415 8770.6142 19576.315 12540.1176 12579.9949 5503.1546 9470.7927 10603.7797 5268.4952 21324.6126 356882362 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 6256.3958 19837.3562 3965.6601 58217.8222 4647.0477 23283.7191 47405.4713 8818.7262 9395.6103 6975.2675 5248.1211 229735.4464 5213.7476 9485.5676 13651.143 9847.6695 9847.6695 10836.0306 38071.3674 4867.2668 12528.0103 64784.571 11342.9268 3953.4934 11662.8155 19051.7402 12364.153 46277.3192 16263.2251 68121.963 16942.9543 7954.5379 15628.2956 5528.2801 383510833 poba Organic Remediation Aromatics Aromatic carboxylic acid Thermus thermophilus JL-18 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 5174.2599 2300.5758 5126.4639 5491.8437 18797.3885 3513.3731 82745.4389 4619.6091 4903.7684 4903.7684 8819.3718 4658.096 6619.8468 7216.6568 5318.2509 2601.2897 5865.9611 5875.7066 10847.9148 7449.8281 6625.4809 1777.7656 3501.1607 4225.3953 2981.5351 18899.35 377807676 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1122653.239 183666.6762 906214.3223 1911493.4329 3615974.2751 677154.3172 826485.7159 763011.526 733308.7068 675180.1168 826626.1531 408875.1181 17400191.9205 863645.1945 936962.6429 1921400.7754 743858.1014 743858.1014 495883.3391 729615.1966 480852.5596 1052393.3772 1405889.2589 1436557.7411 448077.3857 459771.3558 1020670.1125 330789.0526 1189669.1139 898196.732 827724.6054 452733.6778 375819.1742 447370.7628 421182.2367 1243679.7156 225163681 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 24546.1883 6578.0835 48943.8961 8958.2372 2238.9574 20121.0402 2686.6561 7021.5975 5706.2308 4413.204 116561.8038 8659.3177 8269.6926 6699.2251 6699.2251 3333.6286 6159.7603 4875.3993 8408.6686 15404.4566 6773.5218 36157.2618 10593.3841 12121.7068 5992.9102 7011.5838 10484.6403 4983.0054 296257001 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 9148.9764 13481.1 9841.7961 10218.8752 5827.6308 20074.6094 2851.8037 4431.7739 7677.9045 6981.2426 311552.9242 5286.157 5335.4276 5957.6496 7699.5911 7699.5911 10540.3507 27052.3449 7095.3653 18273.102 6569.2542 11125.521 4634.6662 7039.4839 14891.6831 11037.4196 24181.0615 14709.8004 15419.7624 3923.2432 9221.6289 6113.6186 2910.6418 294884055 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto66_4W superkingdom:Bacteria; 4895.0589 2028.4468 3716.8722 58078.0214 17469.1313 3407.1232 11054.9383 21675.6838 36761.1381 17158.9339 3808.8277 6108.8683 3032.3803 4501.823 6889.3866 2773.2919 41223.3967 4387.2378 178925571 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 85117.8628 24858.1501 46578.6164 53005.8769 28809.5903 20476.154 42781.4462 33664.8961 29093.6686 42949.674 57897.1716 34783.0396 2584174.1886 67517.7116 55819.8482 60650.3376 38526.1502 38526.1502 39701.669 90925.0317 39245.0676 64707.4603 58091.9454 91714.521 44643.8468 31608.2283 48407.9925 36689.4742 32034.1755 48114.1621 70867.4914 27281.4976 177122.2055 42862.9186 87039.2383 72542.5365 83025990 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5493.8459 14405.111 92160.6422 10548.8511 5802.1219 8009.2435 4064.0696 7634.7754 16788.7391 6204.9202 223512.3976 11538.5883 13421.3635 28072.0527 11610.5947 11610.5947 6013.8812 12695.1569 12212.5442 10654.0195 9375.319 6883.5512 5800.6327 10951.0765 25901.4416 9308.4374 24094.2791 13598.0224 22575.4455 11795.2683 11343.9711 7824.7919 3788.389 9533.6932 154159550 soxY Sulfur Sulfur Oxidation NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 4637.4969 7521.1673 4391.1637 11856.0763 10612.7996 3539.1251 13326.0912 6351.7501 4564.3982 4564.3982 8605.9632 7620.8809 2906.178 5410.2954 7931.3749 8274.7894 8210.3981 5847.8246 84499236 mer Metal Homeostasis Mercury Detoxification Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 50414.881 21825.0962 153241.548 46098.1793 31506.9248 23890.1636 31433.2605 32199.5501 33749.3074 29109.9241 47530.2306 31272.1949 943092.4812 33353.0535 101689.7207 78708.3307 23531.5454 23531.5454 23840.9247 53072.6569 45325.9666 41601.4958 51822.8133 64469.8199 49037.9582 25180.2316 53132.0328 30538.2326 264184.4208 68813.7629 55450.0735 43216.8353 35374.8427 40528.1194 35337.2422 48256.1615 126249394 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 10814.3454 6003.1732 10275.6766 11888.0151 8148.401 8573.2511 30926.4675 17588.6052 172117.9442 14324.2172 53742.2005 18560.3178 12875.2307 12875.2307 9562.5659 14591.2407 11386.2464 12509.6741 17909.8218 37802.2987 9592.8481 10995.2007 16164.6257 6954.4926 36470.625 12123.3936 16384.1089 9459.9767 19702.5056 18228.4632 6963.4735 12176.3963 45386221 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 97286.5262 6044.5711 7876.4296 22419.4469 5341.119 7598.2293 15929.1871 7139.3986 24741.2216 67406.2626 17680.4764 576919.3748 62751.9076 37433.3143 19443.8789 20840.8365 20840.8365 11108.1266 32306.6641 15274.7967 24318.7688 28996.0458 24404.6399 23064.5326 11593.8621 17479.1988 10429.1729 47517.311 24190.7631 46265.4911 10924.1106 18617.9807 23474.7469 7956.0224 19404.5912 149209717 tfth Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 102321.425 31817.7117 14164.8573 39009.8891 22359.0007 14869.6462 12254.5237 33521.075 36132.8093 194433.4226 28385.8056 20799.0866 15227.3716 15359.4143 15359.4143 7995.8388 86848.5823 26558.2351 15528.3019 32505.251 14661.1033 24819.406 14925.4912 14951.636 36241.9951 65788.7612 53925.0283 123678.0801 22091.1702 18866.1089 25363.9243 11825.2333 23704.1062 378727878 chnb Organic Remediation Other Hydrocarbons NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 6663.0588 3579.9563 5346.6355 3214.1568 3848.6736 4290.6794 2183.0546 143451.6771 7622.0139 8161.8693 5373.6748 7706.1038 7937.7271 6692.4126 5635.855 2166.3158 4181.5554 9473.6831 3143.2453 12177.6228 6466.728 9453.8731 2792.4205 4425.7779 5251.8002 4475.4247 7099.4958 365748659 chitinase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 189612.2804 132246.3792 86675.503 183492.2111 176739.1877 78375.5042 180391.3371 117754.8968 58634.2106 96033.3855 125654.3427 59438.2896 3709113.0041 181106.4363 140482.2632 120773.4945 60786.0204 60786.0204 63645.7404 176343.9287 93752.236 134699.6527 109059.1372 167523.1506 59791.9283 177970.5242 108601.6049 44285.1413 174397.0596 25298.8719 114008.0242 70357.0022 60881.5643 62682.7904 56616.0234 174610.7474 333809261 mer Metal Homeostasis Mercury Detoxification Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 15993.7682 36659.5429 6631.5908 66531.1112 7116.1419 9244.9931 64275.9089 34054.5815 15454.2885 37893.0587 44959.4865 1276662.0835 14975.5762 24355.7243 11567.5584 63280.5449 63280.5449 14711.9478 35558.5024 21586.7985 34244.6165 24945.0977 21348.197 10329.1403 26677.4541 31849.7359 29650.6747 87582.8927 13152.7554 30258.6256 23386.6045 54685.8717 34889.5846 19962.8665 24711.7802 89070019 alkb Organic Remediation Other Hydrocarbons NA Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 81736.0812 88575.5771 48488.8368 114805.2712 53112.6574 28773.6319 58714.8334 65323.6223 39562.8123 57884.9774 63983.475 37403.5724 1847841.3102 92997.5906 75927.7501 88979.0841 56710.7766 56710.7766 42587.965 79936.4754 50521.3001 67611.8614 157553.5501 115384.1648 37755.667 47285.8871 66688.7152 31437.0282 99636.0764 25607.4988 68914.3714 33339.8407 34141.1809 49659.1458 32455.5773 87476.7666 381181225 ppx Phosphorus Polyphosphate degradation NA Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 4368.8095 8170.3036 4358.6184 9376.1996 12580.2789 9059.8517 3064.0481 4505.183 2603.4109 171429.8305 4685.4328 6499.8228 3187.3896 3187.3896 3089.5867 7520.3882 4857.1964 4210.555 5615.4093 2490.0894 2885.5489 5747.5084 2906.2366 25416.7213 6852.7768 10100.5434 3374.9853 3417.449 3297.3126 3175.1043 330688084 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 27228.0603 14125.963 2092473.375 22801.4341 3122.2562 2871.8116 5534.2093 5054.7973 8848.7082 2450.2976 7188.6211 2919.2881 2919.2881 3294.8918 9106.2337 4915.0298 7547.2922 5999.7264 3444.8285 9777.3516 7981.4823 6006.7884 2881.696 5975.6156 4208.4354 3453.892 5410.579 209401716 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14893.9868 11006.5949 7789.8957 10709.9563 13665.8086 28836.7032 5407.6601 13935.4418 5128.3136 10036.4836 11557.0139 14501.6749 160496.7262 11522.4401 9033.6961 14108.751 8267.521 8267.521 6969.806 16448.7036 9927.554 12068.1288 10156.7024 19529.3737 7623.0884 11418.0136 15389.0257 9670.6092 23135.8894 8239.485 12700.2169 5892.9288 8820.0789 5561.5578 4792.7546 7774.3264 145214433 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 26086.5432 21410.6068 21425.9086 15689.8243 8804.0519 19203.6494 15075.2799 52350.7836 12972.0628 21563.9614 18368.3143 1048314.4546 38456.986 21831.3491 47805.9641 11105.2275 11105.2275 16113.0842 31287.109 46845.486 20234.3345 145767.9617 24068.3709 13702.0952 14533.6384 26123.584 14001.1662 40767.1876 24753.4696 30826.2518 10156.6479 14010.7486 35656.2872 21973.4955 25973.4148 374324792 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 28599.1406 15326.7473 24757.4497 15387.8574 9977.007 5902.567 16062.2408 10392.7499 15897.6392 14709.0426 129286.4266 12421.1316 23251.1242 39385.4485 6644.5767 6644.5767 7146.7038 45360.1452 13639.494 15497.2766 22519.1455 20081.3265 11803.0645 12758.4768 18500.7046 16451.9816 29955.7813 45709.5141 21935.797 6296.7185 12205.3081 15324.5277 11018.6264 10675.0153 310823767 gdh Nitrogen Ammonification NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 101027.9334 18027.5782 5843.3187 5624.7194 72342.4224 80711.497 9279.4749 41417.496 33831.4572 30438.1025 1645884.3833 21005.5671 112650.9694 26439.6307 18414.4646 18414.4646 11273.8768 32417.4423 20210.6165 40698.467 173581.5759 54727.8627 46106.1894 16543.1242 20859.1928 10566.3117 39809.1315 21007.2493 34951.1678 14009.5285 22613.5339 20192.8642 82085.1551 12035.6928 118693048 nitrilase Organic Remediation Aromatics Other aromatics Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 48039.612 68584.9955 35342.3037 45568.9273 64195.0931 7551.2346 69224.1853 171719.4151 30484.2555 66575.6884 60353.9732 37231.0407 1147947.8785 80526.9767 61737.8032 55959.2269 47463.5136 47463.5136 29352.1843 82634.3382 48377.1188 66399.4961 88132.2584 102869.6345 27171.675 26669.3333 55455.5879 27079.5019 263181.2809 66373.7809 120303.0325 45302.8003 34609.2929 43122.4188 24456.3451 89760.2148 293395633 nasa Nitrogen Assimilatory N reduction NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 4332.7268 5709.8355 12263.5003 5379.8503 2677.6593 4239.1394 2196.8558 4727.3862 6529.84 3458.5227 97025.6057 4457.1753 5915.064 3235.2103 3235.2103 2960.2935 7819.3152 6295.1216 4475.1974 6000.5704 5271.3743 2712.0753 3198.7821 9503.7553 4857.1458 11330.9061 9567.1165 8149.9905 3030.2398 5039.6892 3893.8165 4821.9261 7147.8462 196478574 ppx Phosphorus Polyphosphate degradation NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 27934.6627 85138.1753 15222.584 20438.6704 10136.4992 12843.5707 14150.5539 12132.6588 9716.7178 20084.2443 22894.217 14249.648 468972.5664 28665.2203 28832.2135 18437.9385 10413.2551 10413.2551 12785.9561 31935.9396 19881.0704 188104.0743 23928.0899 31249.9222 10411.6651 10994.6646 22686.0527 14252.3894 9165.8243 14131.3053 21035.7698 8462.4519 24279.1374 13579.8375 8439.1199 63561.4522 124266776 arsc Metal Homeostasis Arsenic Detoxification Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 12001.0736 7160.0097 5762.2448 7602.5231 21443.0015 12483.6047 5818.8478 457889.9528 6889.6562 11284.7321 4092.7731 4092.7731 5617.9507 16102.3373 4973.5478 6847.579 15029.6306 5690.0885 4501.1792 5726.4306 8846.7699 7181.8559 22395.4799 40376.7176 13117.2294 5040.0553 13445.505 5152.4395 5414.2432 7942.5328 293602149 cysI Sulfur Other NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 11704.7788 9880.4795 7057.347 6584.5831 32402.231 4042.1021 10348.4575 10476.2012 18370.7537 14845.258 792033.531 67474.6949 27969.4467 11843.2356 7897.1575 7897.1575 8559.4015 62115.4534 10681.1578 40000.2117 20086.4732 191043.5041 8492.3141 13386.5688 15464.0826 12010.3035 81831.7168 14432.0068 16861.6068 10184.0765 14416.0019 16880.6172 7358.7976 11743.9546 209520283 glucoamylase Carbon Cycling Carbon degradation Starch Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8603.5864 6422.1494 10133.1316 2546.9048 12881.0584 3197.0283 3872.2438 23527.3482 11336.3431 88509.018 6596.8647 7277.1937 9441.3702 6377.3884 6377.3884 5211.1516 11577.7645 8665.0339 7707.2809 10491.4762 8742.7909 9703.3042 5346.2373 8237.7989 3319.6062 10474.622 7499.144 10250.4957 3524.7817 5305.4878 9109.5078 18775.0206 7978.7668 161505800 xyla Carbon Cycling Carbon degradation Hemicellulose Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 4598.2691 5208.8686 6654.9162 50996.465 1977.9775 3920.3568 77961546 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8183.2888 4977.8572 7403.336 4195.3656 62071.0153 4669.354 6332.8354 2728.3035 2728.3035 2997.6711 7237.6393 5707.6844 12321.2975 3827.9417 17219.3161 2718.3421 8655.8897 9638.1238 3048.716 3871.9197 5060.1171 2294.852 4310.2752 18034231 aps_apra Sulfur adenylylsulfate reductase NA Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 33055.3594 8878.5296 12152.7853 25582.262 5037.3266 29571.8693 62793.2475 17016.0108 10774.8673 88725.7002 18160.7946 207669.2208 13292.3847 12909.9941 28784.2726 9720.1986 9720.1986 9657.5249 29582.2332 19519.8564 16816.0852 93868.9078 15613.0916 7724.3395 15989.9154 27529.7551 16183.1644 40093.1687 20797.143 32901.2527 12859.4867 12371.1698 21081.4127 12689.3098 37494.3509 84511185 alkb Organic Remediation Other Hydrocarbons NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 173517.0803 28790.0584 453668.4519 123122.3353 41073.4275 64954.6003 153032.4559 162251.6466 141161.9223 132466.5227 99136.5046 149229.7838 2937278.8834 264538.0075 197076.885 531677.7072 74788.0214 74788.0214 157996.9666 127238.4282 58383.2776 122824.0942 133826.0788 677693.4939 145901.4872 98316.3032 142715.6539 72769.6627 712459.6516 193434.7337 116174.1064 94694.5928 65010.9368 85599.5238 70178.6587 95870.7277 300780984 terc Metal Homeostasis Tellurium Detoxification Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 40579.2869 22032.1812 7958.9002 13719.0687 15980.1614 17037.0836 14507.7943 35065.8802 16566.3311 29858.2962 117344.104 272754.7244 19714.8384 14474.7742 25539.4103 9789.0482 9789.0482 25936.6118 25812.1671 16611.235 14816.1023 22145.1794 16549.1594 15825.3636 16206.2585 18402.9073 12004.294 39362.2815 14962.5198 58410.7978 6486.3343 19160.6849 16128.0623 20502.7241 82490.2089 138894322 nirk Nitrogen Denitrification NA Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 36409.1131 11769.6445 30388.5737 37978.7995 9094.0435 33553.2656 21825.1426 15708.8674 30386.0688 41073.9113 31977.5957 493361.4633 24019.1794 51849.8998 40525.1547 22731.6021 22731.6021 17770.3803 75880.9144 71799.3654 20215.4563 68417.339 46456.3773 21357.8181 15205.1864 36554.0707 21014.1838 70310.1355 138339.3758 42391.4682 18866.6968 18478.8634 23308.9943 10567.806 30019.4746 39936624 arsm Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 89790.1786 33064.1263 50798.7492 70341.0655 40396.0005 63500.71 97421.5734 35231.0103 91189.8357 130879.4506 95097.6738 1101291.494 40742.1091 73345.2202 85999.2693 48729.6255 48729.6255 31856.6438 65163.4084 36644.6243 49797.6123 485638.0637 233175.6023 126875.1232 39568.725 55248.3461 78699.1875 103396.1464 110903.2244 67661.0293 50214.6271 48245.4045 45849.3641 28573.9479 132701.7658 320155192 Sir Sulfur sulfite reduction NA Vibrio vulnificus MO6-24/O superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4094.1778 6676.5681 3460.3307 13454.5035 9829.8317 68505.3204 4049.1368 4770.9176 12310.4249 108046.214 7583.4634 9909.4617 36140.8058 1198545.7588 5545.4506 5621.4175 1868.5441 235844.8714 3397.889 2298.6312 4656.4512 78183208 Rubisco_Glau_Rhiz_Cryp Carbon Cycling Carbon fixation Calvin cycle Cryptomonas paramecium superkingdom:Eukaryota;class:Cryptophyta;order:Cryptomonadales;family:Cryptomonadaceae;genus:Cryptomonas; 21469.1373 10211.8545 10701.9522 26524.2402 26504.7799 16117.4655 17333.2472 12731.0297 15128.4857 17439.4036 11203.5066 496438.3997 24461.9989 22287.9784 23006.6658 12600.7212 12600.7212 12378.6311 32132.3772 17536.4277 21096.5391 21318.6993 24755.7454 10616.5573 8888.9906 22310.9632 11163.8373 28423.8331 12712.4796 22864.8291 8350.8904 12700.7633 13144.5212 9523.4137 24971.8682 170731211 ppx Phosphorus Polyphosphate degradation NA Xylella fastidiosa M12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 11195.2531 5588.5619 13759.0465 3120.9318 5443.0211 4234.531 5550.6446 7962.3357 171910.9573 7275.7057 4987.0602 3287.0588 3287.0588 6689.9882 8364.3836 25719.3501 4164.1014 4895.1539 5058.453 3804.2351 8584.2613 16732.4957 3021.9118 17814.0959 9541.5536 12366.6427 4861.2672 6300.0179 5931.3239 3377.5651 7509.9244 398097629 B_lactamase_A Virulence Antibiotic resistance Degradation Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 34771.8299 26026.4372 37804.9896 41176.7483 134647.0321 46553.4555 107695.0242 42229.1196 32538.4881 39586.7777 42052.8244 82811.907 856079.1773 73463.3296 96340.3155 55088.7539 49076.3728 49076.3728 82238.7169 66437.8966 42706.495 77316.0078 150600.2695 86089.9167 224742.5771 46297.3998 72681.5148 53879.0304 97302.9891 56413.4642 61520.5053 75424.8979 86270.1931 57153.7001 35982.9051 61466.805 126737564 dmdA Sulfur DMSP degradation NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 53996.1451 20762.993 581515.6614 13613.9057 15606.3904 2003.9857 4357.5608 7559.0408 4472.4893 5134.2397 8375.9636 103100.8877 6889.5653 12815.528 4331.276 5797.7758 5797.7758 4721.926 12600.9975 11427.7499 61351.2431 5386.1861 41289.8553 6961.5284 4924.2497 12585.8402 3623.6648 22065.8751 17996.4818 24816.2521 2961.1326 8020.421 5819.5683 3057.9022 28771.6419 146308011 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 23530.4589 15170.573 4468.5957 12640.1509 37126.0766 149752.6437 46002.4064 11155.7566 24044.9333 24009.2912 907530.3914 30814.9927 13963.0283 10826.4858 89702.3165 89702.3165 11793.5321 28720.9008 16304.8586 115960.2446 17197.6936 297854.4743 17120.9125 20169.9622 18374.3722 13587.7677 101273.7004 31155.395 15505.5766 11355.436 33882.1663 25140.1162 71945.1688 15760.7591 63081978 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 12180.0802 7254.06 16646.065 7283.3479 9528.9152 7380.7918 5442.0774 9323.4188 10918.5494 25084.8124 209053.4748 13629.4598 11095.5632 8206.9868 4924.7374 4924.7374 9823.02 16722.7688 14497.9091 13725.8946 12042.3487 14365.59 5990.0264 7530.3391 17499.2468 5467.5367 35564.7049 15022.2516 19038.0206 7422.3004 8367.9149 9384.1675 8118.1853 25434.7075 365178085 ppx Phosphorus Polyphosphate degradation NA Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4570.663 3954.0846 2348.967 3455.633 2449.1104 2449.1104 7893.5998 12733.6048 2383.5203 5427.8854 3111.1896 3010.6894 3748.6091 7166.3978 154183467 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7443.3978 2160.8358 62791.3499 4291.6942 4731.7974 9355.6622 5694.3487 3756.1938 16539.3207 7236.3597 6468.2812 2012.3465 3121.3985 90928.015 6852.0513 60476296 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11191.5056 5947.5359 3459.4016 7788.5176 25411.7945 5238.7164 3076.1203 3600.2096 4028.4186 10654.312 4196.2398 4196.2398 6735.3945 8357.0185 5053.5842 5140.5678 4170.7826 3950.5019 49682.7836 3923.689 4824.1645 7548.9828 2071.6275 4947.631 3660.065 3047.4146 6045.0138 357226553 bphd Organic Remediation Aromatics Polycyclic aromatics Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 65666.5146 47982.2656 33367.1802 439197.7475 9234.3549 30644.1707 69382.2071 157726.2866 42235.911 90637.6485 109482.7446 634326.4197 181011.802 62244.7435 43986.7285 64141.472 64141.472 61733.8444 82652.3775 31573.2775 44421.6796 57280.6397 225099.182 39982.7363 69777.9544 52790.1515 37113.4436 139156.8337 76407.8801 90194.3102 129398.178 60128.0257 46811.8968 30574.543 142072.159 385675992 catechol_b Organic Remediation Aromatics Other aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 20021.3398 16254.2585 16954.3314 53349.4343 9469.7847 14211.2272 12680.5479 10198.6326 17974.0675 8758.1137 327144.063 14090.8616 16231.7167 13522.4352 34382.0088 34382.0088 7598.9369 24357.0439 15206.6975 13038.7386 15916.977 18192.1907 9216.1385 9709.0888 20914.7403 10333.063 31234.0576 21079.3183 27109.6234 7184.141 11990.2975 12642.5893 11234.3029 18029.3171 269979615 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 42141.1187 56642.9434 11510.1882 13296.7857 12567.0105 10623.4006 34474.181 20594.8115 23330.7802 4842293.5056 15773.0325 21752.5366 10069.3782 12528.9605 12528.9605 70065.3593 30191.8838 17287.1744 21692.2633 37250.6946 20673.0354 15524.3562 13036.9445 16656.6258 10577.7585 44939.2291 29632.2899 33910.1888 16101.3868 33750.7605 14284.4722 10634.7767 30637.5202 315500782 arsc Metal Homeostasis Arsenic Detoxification Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8922.5415 65746.2964 3980.8963 12161.1056 11445.1816 6262.6665 11938.1864 5419.1751 6837.1422 4519.0661 9305.6348 5565.1228 5753.357 5753.357 112852.8208 13642.0729 11495.8378 7372.1345 22175.0522 8720.1123 31851.2208 8645.3181 14430.4593 17850.4573 28000.1212 43719.7436 17119.1809 9351.4061 15554.6269 9103.0496 89618.7682 97708.2346 254822999 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 5944.4631 2304.2038 7505.3402 19782.4017 9706.3547 5924.3947 69658.6889 250987.6573 12534.1144 22569.0113 2928.5041 2928.5041 25059.556 13587.0201 6908.8405 5093.6281 7407.1903 4335.157 4296.6353 10089.2333 2505.4354 13559.8248 5416.7242 18330.0297 2648.9967 13283.6907 6301.8507 13591679 dsra Sulfur sulfite reduction NA Bilophila wadsworthia superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 22400.0742 17820.7834 12025.2378 104356.4113 12813.8218 11741.34985 21651.4104 13230.7044 11222.5111 282685.2975 110833.8453 45025.6593 7156.124 11527.2048 41700.4012 30460.98755 5743.31625 148871957 fosa Virulence Antibiotic resistance Degradation Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 3604.2326 3483.0103 3322.7587 2429.3955 4806.1165 5303.0399 68123.8848 3853.3254 3265.4645 4417.8973 3572.0224 5783.8108 5556.8809 4158.1648 10129.0433 4459.0752 5337.3956 9591.0549 5226.2086 3915.8945 4552.5541 3876.0419 2718.9433 11782.8507 303298878 arsc Metal Homeostasis Arsenic Detoxification Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 12935.7833 5514.5427 6877.2898 51282.6417 16066.9089 3436.3271 5759.3204 2744.1342 20382.0985 9254.523 31239.0099 230926.9246 14256.7471 13826.7455 23171.0186 10963.158 10963.158 3719.241 19708.4628 10770.2238 6175.1738 7944.244 4447.0419 33917.894 5613.467 18668.115 3200.1558 19008.6279 14620.6852 17788.8655 6194.3871 9070.7941 4166.9246 4299.6499 6175.5225 6453624 trzn Organic Remediation Herbicides related compound NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 12509.2094 11221.1462 17695.6536 8961.4746 11771.7471 12038.3503 11255.9531 13425.1341 28349.8638 14902.6394 223901.658 27249.362 10452.9049 11604.7819 6687.9185 6687.9185 9533.8918 19407.5817 24145.8812 20908.175 43367.2623 12696.4029 7151.3069 14508.9345 13556.2167 8213.5231 20624.2243 14106.7902 25273.418 6134.6672 13303.161 18067.853 12000.5545 20005.4777 259033095 urec Nitrogen Ammonification NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 17587.8608 5970.523 14029.1376 32022.7161 9288.6843 7316.6217 448136.6677 7134.9682 10229.5225 23877.8335 15365.6862 777585.8128 12706.3813 19819.6951 18862.0601 25605.6751 25605.6751 375183.6772 41124.7243 19339.7528 9322.4333 80462.0365 13709.2796 9371.9485 11469.2296 34035.8637 29146.101 53262.0971 16772.6147 24964.86 9405.372 23522.3705 26018.5755 15612.6012 16692.9769 307631466 vgb Virulence Antibiotic resistance Degradation Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 5824.9846 7287.701 4156.0755 2620.626 2061.2129 3399.1732 4872.9043 108523.7961 4894.2097 4075.9272 2928.9127 2928.9127 4875.8186 8476.2916 9116.3499 3584.8183 5067.4694 5994.7099 2553.2317 3678.9554 10276.3646 3342.8031 9073.4988 4898.9026 7174.5526 3024.5226 4160.8949 5592.495 3481.6299 7011.3609 114778450 rubisco Carbon Cycling Carbon fixation Calvin cycle Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 11171.9055 12250.6906 54069.0029 4506.3105 14855.5799 7104.0567 5492.9148 9211.5708 3627.1802 246894.1565 12681.0839 8580.7755 2402.488 2402.488 6700.5977 13811.7042 11183.0388 7252.6464 12289.0033 13557.0159 4828.2173 9937.6326 18529.6512 24259.4485 19921.7145 45131.2077 17285.5862 8612.4206 6917.2652 9201.7215 5687.956 10795.6543 157285618 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 15657.3148 7237.9269 12506.4702 78880.3442 16822.2836 30056.1641 11020.3856 5113.5173 14196.9037 14478.218 8104.315 255354.5653 11821.8706 13730.743 12053.168 19124.9268 19124.9268 8906.6963 49734.1358 16846.9888 15511.7056 11593.2401 10847.4115 9118.2388 8911.1816 29660.4647 10099.4877 36748.6488 30366.3615 29845.9829 17067.1233 11723.9841 7617.2741 15683.8157 14703.6746 302908268 cutinase Carbon Cycling Carbon degradation Cutin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 3544.3502 3897.7868 2374.7079 78796.3416 3927.5462 1967.3286 1967.3286 3576.515 5782.3358 4715.1626 5617.0892 5567.511 2785.2571 9046.4999 2817.8204 7612.5727 6801.2534 7247.2997 2544.1956 4643.2281 3697.9873 3898.5865 7043.3013 229494549 linb Organic Remediation Pesticides related compound NA Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 30896.2791 25512.8023 30692.4086 18071.4966 11697.9474 28311.1053 64165.6941 19206.2899 18389.086 66590.7474 12599.7111 456429.8529 19079.8537 28518.6315 26899.1881 17352.7874 17352.7874 15743.7065 34881.6955 25991.8048 30215.1746 28902.482 58059.8508 21767.5797 29531.6738 29422.0074 13479.9286 51597.4836 40625.5612 54637.9653 14585.2147 38387.4978 22970.6198 17621.6838 57088.3422 269928661 nitrilase Organic Remediation Aromatics Other aromatics Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 5039.4347 17316.539 5993.5434 9864.545 4999.8744 5051.0752 8383.89 4112.4846 221761.5087 10325.4484 7622.6272 11943.6938 5684.0166 5684.0166 2974.8558 9744.4639 6661.2047 7391.4616 5893.1681 9978.2027 2735.5274 4923.3687 7791.516 3883.5912 16600.2101 9649.6645 3069.1499 5951.5398 6973.4009 3463.3439 10029.1515 338739048 PRI Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 30966.0314 13001.1749 43677.2545 11213.9764 17143.1977 167670.4356 10729.1189 8511.8739 24182.9282 18602.1006 2354957.0092 33795.4814 31608.5091 12372.1108 37107.907 37107.907 7610.3212 23968.304 13613.6074 204804.5877 24711.7864 16391.0836 18021.8075 20459.3455 16856.5277 14707.2293 27592.6572 16476.8056 17229.7919 11333.8906 19456.0565 21760.4764 10637.0785 27397.7506 225683239 nirk Nitrogen Denitrification NA Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 31935.0702 33358.7225 437201.8365 28051.0729 26619.5352 32847.1877 117833.7377 27588.835 61886.3646 115707.5517 50300.7468 1389027.9025 108976.4637 87713.7273 75268.7107 307733.9344 307733.9344 24511.8948 86502.7366 66928.1626 40227.4815 28465.0548 48538.0035 10298.1973 35464.7237 39212.6583 151103.9981 71434.7634 110281.9028 56479.7952 49342.7292 34387.3345 35534.38 40325.7389 147061.2844 384102122 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 52677.2167 13685.0583 39033.3788 56576.4065 88480.97 65597.5358 32249.4296 37203.4565 23603.7339 35978.9386 41009.7647 39720.5992 599809.9609 55908.065 76030.6506 91339.7897 51034.1195 51034.1195 51765.128 52754.3112 58890.0491 64630.8399 100599.5376 52062.7818 22688.6087 28117.3322 55612.4081 21683.6449 77988.3388 62824.6146 66012.7173 27032.4762 31274.3094 134646.5189 22426.3263 34380.734 288962945 nirb Nitrogen Assimilatory N reduction NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 92225.6153 9047.9778 20134.0303 33512.4783 24761.2446 12471.3709 20334.097 19562.9168 18210.986 23559.6107 17811.1468 440550.4966 23985.8268 29281.5266 32492.6208 12621.1606 12621.1606 21622.5058 41893.3152 22529.0178 26432.6763 38538.7365 31425.3667 12860.7465 23659.3234 31419.538 14986.6454 43141.9078 9047.2439 33026.1441 13424.417 15593.1867 20137.4889 12509.1028 47213.4367 335947873 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_30 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 6648.8005 3584.143 13844.8612 8325.486 3560.833 8755.6804 5167.9499 134163.1895 5037.213 4626.301 29839.407 22801.8621 22801.8621 5907.6672 16793.9612 9193.2756 4558.9962 13557.6081 10485.4772 5453.9049 5964.2334 20395.4064 7361.4377 12832.0615 5078.3321 13016.4266 9996.4665 29102.599 7855.5073 7773.6511 8528.3839 329570378 TIM Carbon Cycling Carbon fixation Calvin cycle Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 28008.0338 18676.4108 13407.4559 16189.6093 13435.5846 12015.9877 9017.796 7082.8977 15678.7301 18122.6353 14481.4558 357914.5389 22308.5858 22828.1417 15037.3411 10248.6238 10248.6238 15222.8732 23787.9275 19318.6256 24560.2058 23000.1527 23890.4985 11283.8188 9425.8471 32851.3515 9536.356 53572.1416 25469.5496 26223.1998 10893.6376 14832.5035 16029.8684 12502.4449 34507.9886 335437739 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 31474.5806 20917.2183 7927.8537 9930.8388 21122.3809 13978.8562 31957.619 10607.1761 33984.7719 26002.5851 361030.4467 13339.865 14766.5842 22427.4795 29998.758 29998.758 16097.6534 30107.8377 21665.1238 35482.1013 25778.7763 69134.9832 35405.0822 30426.2058 17659.6917 94459.8741 70374.1841 18035.304 23435.9667 27971.9765 40711.7621 34737.434 13316.0643 85889.0582 339006418 b_lactamase Virulence Antibiotic resistance Degradation Brevibacillus laterosporus LMG 15441 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 13768.3288 12544.3999 9787.0189 11269.7694 13128.8207 11471.8819 10356.4164 14855.0495 16113.8437 8028.1337 497097.1543 15626.0738 12357.2859 8848.5319 6352.5238 6352.5238 7469.5753 20108.7059 11407.4746 14535.6029 23045.5035 11656.7606 6709.7433 9094.6782 16463.7844 8363.4947 26445.6953 19259.7722 15693.6972 25444.9376 8695.6915 10402.72 16631.595 15835.582 332980659 chitinase Carbon Cycling Carbon degradation Chitin Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 4467.51 6521.1837 3522.9683 3222.0567 1974.2343 4495.9884 6485.9803 8521.0565 139339.1582 6180.2924 5222.5578 4435.3173 4435.3173 3011.861 8028.3602 7683.4018 6030.1621 13766.8916 2857.2855 3205.1465 9883.6703 4290.0178 18066.0127 6900.3353 8265.665 5370.4662 5163.1484 7348.5487 2350.9388 13006.0131 182382478 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 43667.6099 7893.16045 8162.7408 13652.0603 5080.7319 8507.0433 2725.23795 123019.7902 12127.9265 10133.5503 39700.2968 3963.2242 3963.2242 9478.4765 11153.95485 13088.95445 11452.2465 23807.3664 54035.5008 15072.86085 18853.8965 20529.0056 19049.6556 12512.89585 17617.7472 9548.4476 18293.2934 354573896 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 73964.7126 10892.1218 9239.8772 8992.5824 20876.3053 26183.5385 6991.5456 17475.4017 7206.2927 449107.0509 7125.096 8540.9418 19455.0634 6086.6299 6086.6299 6769.1913 18808.589 14047.4008 9442.33 17712.4248 6286.1598 5334.7727 11468.572 17335.8309 6150.6481 22864.0815 34885.9697 16586.6783 4603.9825 12571.7407 12814.443 5343.6455 9688.0976 349699926 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 31473.3996 27412.9994 23756.8254 52182.8827 11351.6497 15557.3318 13038.8597 19265.2387 27864.0417 26718.9308 67574.7876 435733.931 51689.7524 23381.5996 18348.1905 23404.904 23404.904 18239.2651 29644.1292 18928.2369 79636.9297 36189.1414 32403.196 12413.2521 26832.3912 57729.2289 16162.2651 49662.2169 23734.4216 36004.6668 13959.9292 16902.5359 18378.0199 12890.4508 26753.1698 86358387 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 14029.8993 7974.5918 9296.1351 6007.5987 7872.221 3990.8378 3790.5149 11636.9024 16129.0458 7233.5664 126082.5882 8073.6866 12572.1471 19447.3341 9797.5669 9797.5669 9256.0549 19792.5988 11419.8933 16112.7467 33108.7117 11686.8202 23530.7817 6509.1271 15177.929 13362.3787 27906.0872 19709.3949 22140.6621 9161.937 11904.1288 18505.3803 13483.5262 22300.4061 171705277 phytase Phosphorus Phytic acid hydrolysis NA Yersinia frederiksenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 41611.2704 28457.2178 60488.3832 9640.2439 28882.2413 90855.4616 20054.912 17674.7686 47483.7732 60272.2754 80549.6057 15630.7906 17260.1788 23163.9343 36925.3012 36925.3012 35881.5296 41330.8458 47497.3115 51158.4765 55297.5663 23519.8237 48004.4072 45305.9504 58586.128 42431.8347 104756.0193 34189.0314 106395.6734 8728.1437 30724.8542 38760.8192 15514.6981 106526.7774 315262941 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 59801.5503 321548.0081 55872.1787 225137.4598 2812487.6884 54182.531 30918.3866 91856.2784 96730.9287 50981.3622 73995.8273 99765.4087 4438189.5503 169811.1306 141750.9513 66730.9142 135570.3821 135570.3821 46244.9392 94841.8903 66271.2742 201737.1741 98239.3101 57439.8205 114019.0677 70943.6146 67627.0175 63893.2391 205490.5955 85396.0763 128296.3367 85844.8659 62830.2674 59111.7139 68895.9018 84363.0176 392402672 amyA Carbon Cycling Carbon degradation Starch Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 16495.9506 15026.25 6935.8154 99844.3746 5788.4492 8333.597 28141.0997 12640.4159 16332.3411 23108.9261 23494.6418 281799.8316 161516.6776 17831.6316 37509.9398 24985.6636 24985.6636 8337.964 32920.67 14386.5483 12885.0132 16280.722 24210.71 7943.5569 25277.3606 24572.2495 13374.1256 410688.6499 24855.3049 24330.0639 13808.5404 23815.5497 29276.6678 46099.5747 13008.6746 145576828 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 11741.2692 6757.2334 11590.5908 20196.416 2413.8954 83100.4653 5533.3245 4200.9928 15821.0295 93420.8366 20451.0495 4517.8222 4651.4426 4651.4426 3410.5167 32379.3574 5188.0979 106707.1052 29942.5299 5517.117 140818.5627 3975.2783 6514.5716 3715.2455 12886.1506 10982.7155 9602.6135 4713.6821 10796.4566 6402.2506 4380.9583 737385.2 357402281 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 759854.7036 15149.4295 503946.3238 109147.069 485571.4488 99098.6774 131606.0094 360516.0434 207702.9978 140945.0671 348308.6692 222316.8925 2848798.0645 294116.324 836826.1475 528224.8094 393435.0743 393435.0743 199977.7061 341425.4331 193350.2991 396379.7486 536708.0115 116697.6386 242112.0403 176178.9865 387742.9905 236423.7646 804489.4612 380316.7533 391247.2861 135246.1192 233958.4361 250779.8104 435267.2601 394078.7516 190687878 tktA Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7982.8908 59648.0351 8670.9125 8006.6593 4667.6558 12424.1385 12002.6598 7336.4849 8096.8169 5839.1271 175431.7867 7166.7101 20865.9264 9443.7516 13736.7193 13736.7193 7460.2995 21657.2189 9157.7206 6831.7283 17635.1903 15861.3727 3978.4103 7615.0983 18151.6824 8090.2341 60573.9129 10360.7598 16073.0928 4612.3976 10181.0522 18261.8268 3899.0218 7991.6784 320107936 pme Carbon Cycling Carbon degradation Pectin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 9774.3673 10424.3039 5936.468 8286.6668 14135.3892 4243.5076 2771.3708 6690.9327 21306.323 7000.3376 130552.9027 7686.7946 10822.0488 4703.693 9772.3838 9772.3838 5784.2365 13319.4609 6128.2162 13211.2021 7400.0178 11849.9601 2907.9527 9294.5644 13187.8245 11636.1587 17742.3846 17512.6667 9210.74 7197.7034 5840.2071 10964.7091 228672.3323 10346.9443 225874281 amyA Carbon Cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 9802.5994 8195.0318 6060.4274 84372.4801 5410.1198 9900.1569 9115.5813 5666.4937 6593.3473 13304.4511 7423.5679 602238.1855 7004.6139 10531.8433 18349.5625 11857.5189 11857.5189 8681.5141 33758.1949 27739.2405 6983.6187 6417.0921 10783.9036 6897.8557 12040.6941 35914.6138 7600.6652 26163.2351 9774.6842 13901.0758 6142.754 8962.1495 8158.1863 4129.7867 7411.3106 284041906 one_ring_23diox Organic Remediation Aromatics Other aromatics Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 71824.0292 27338.081 24715.1759 97691.7684 7934.1255 12912.894 28114.8811 21890.5455 52036.9591 43341.376 39278.5663 409074.987 50046.4888 69529.2875 31985.3195 21837.4462 21837.4462 24194.3187 42620.5472 40587.5597 30775.2687 57295.079 22942.2802 25377.3696 53099.3084 31867.1268 36934.803 89558.658 26792.7116 65606.644 25748.2313 21092.484 24978.4269 24716.1214 58880.475 85078070 cellobiase Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 11255.3325 362345.5048 8805.8627 2567.2158 20838.0987 15012.5011 3812.4278 9696.427 226305479 cysJ Sulfur Reduction NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 74289.5641 41847.735 76402.7607 342304.3743 42429.0377 14511.1222 73292.5051 18961.4792 15097.4713 10422.0387 12910.8276 335824.8722 27860.9841 35123.8725 29587.0342 23618.0061 23618.0061 13203.1923 38197.2203 25596.3849 17363.7988 21789.9916 8527.0621 19980.903 26764.821 46088.957 69190.6202 53490.7626 29074.5752 29140.5903 19580.2874 18824.6301 35742.4342 17042.4329 17337.7059 77974242 arylest Organic Remediation Aromatics Other aromatics Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 17855.4661 5624.2012 8332.0747 15961.0753 2522.6052 6526.7177 8153.9636 3411.7838 88488.0642 5570.5793 5922.3369 24571.1523 4070.7303 4070.7303 13242.6332 14413.5722 6816.102 7128.1464 6850.3698 7836.3235 5948.1327 6978.2939 17586.1373 5243.0627 45199.3535 21948.0909 10682.0318 3325.3134 7449.7663 5954.4094 5200.693 11243.1643 304437701 cellobiase Carbon Cycling Carbon degradation Cellulose Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 6598.7915 643190.5824 7446.2927 6101.3457 3562.5424 6010.8772 11324.8467 14599.6034 182486.106 13045.6943 6870.1532 4836.979 4039.8798 4039.8798 4716.828 12282.4382 7380.4268 6747.5056 10710.2071 16884.8805 6300.0057 4990.6844 11871.1411 3990.1347 17613.95 6657.9556 11290.0921 5407.6085 7138.4637 6171.7366 4567.9872 14774.578 113526722 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 184666.984 14616.4414 341108.4651 44323.0851 26994.1925 13288.6666 62883.896 29201.2312 23537.3531 220382.7078 101462.0982 46139.5719 4199132.5163 55580.4309 66992.3235 121732.4343 28590.2235 28590.2235 142432.0042 366522.3153 58648.6587 25144.7212 61281.3376 27449.4018 45744.3073 44812.122 51939.3421 111615.4514 52201.1098 42164.421 120330.2766 20743.7395 56166.2971 55065.1457 17902.3222 83511.3912 365335053 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 105069.6588 49475.9487 51303.6697 57802.179 90537.342 19742.9187 62953.8941 35820.4033 51136.888 50733.9671 132195.8516 50919.6294 743340.169 51198.231 123605.4953 60539.2054 65806.4339 65806.4339 39771.2823 173723.2945 66181.3556 96627.0172 101236.7081 90534.5907 41533.8542 52448.8426 87464.8837 123068.6174 253850.888 76490.9875 119493.1522 33198.0181 65119.8836 74394.6288 40537.674 80033.5434 83950479 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 11981.3086 10383.8964 18093.1301 8297.0314 7024.8974 8634.6443 4462.6641 7967.491 6610.6662 3834.382 132383.4207 9677.7227 8959.8465 9562.1593 3601.3956 3601.3956 5198.5444 13439.062 8643.2883 5447.0127 9527.1168 11692.552 5602.022 4925.498 10621.6748 3903.8537 19963.3699 3999.732 11809.8049 5380.5748 6253.356 6770.9717 4901.1499 21435.9286 119371710 narg Nitrogen Denitrification NA Dechloromonas denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas; 55001.3611 23253.0342 18163.6136 42025.85 18177.4289 15740.9947 13696.4098 239445.3914 19900.0589 94194.771 13148.6476 458535.8737 25601.2554 141285.9824 50566.0506 23985.7352 23985.7352 10035.0244 38285.7483 21721.6848 15990.7057 97027.1846 21987.5339 13010.7831 14635.902 20088.8589 17088.4379 42013.6916 24113.074 25229.5186 11894.7503 25469.439 12258.2718 22240.6551 26606.8889 23013981 bco Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 27019.4855 4720.1601 5211.6572 607705.6146 4418.2701 4960.8849 6059.1716 88513.4218 3984.9958 6743.4357 3878.0487 3878.0487 6238.3443 9601.9541 4037.0084 5541.703 6330.8929 15082.1264 3760.7988 4300.4909 7195.1055 3242.5215 16711.4258 8111.0907 9228.5489 4247.4673 6347.0991 96589.2727 3901.0326 9252.8127 78102023 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 32255.9409 12195.3558 131211.4319 34193.8681 19659.157 5507.0376 19885.4824 11744.4038 13995.0236 25525.801 27185.7023 11807.5582 545275.8381 25134.6462 29801.4454 26046.693 12299.6394 12299.6394 15655.7729 33331.1269 25402.883 28783.7096 22786.6544 27744.1157 15182.2022 13498.4225 27153.7438 12660.0414 63837.7306 25212.537 30611.1776 18633.2905 16545.1025 15544.8156 11454.1647 42811.699 292493826 exaa(moxf) Organic Remediation Chlorinated solvents NA Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 57118.0169 22306.2665 92701.6734 54637.3558 52135.5918 8169.3783 37903.2256 39557.8412 33620.2316 38237.8694 42924.9709 24618.3877 1101083.8671 157404.5482 54714.122 74321.1736 50197.4372 50197.4372 39217.7538 91129.2814 48727.8147 105678.1115 49272.3106 64646.9655 32993.6662 31850.2455 53825.3235 27552.9521 113476.078 57512.7378 53211.1221 28637.8492 40673.857 46174.7798 28416.2583 68098.9172 156085410 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 15213.2707 18417.493 3819.7046 4140.9944 66522.6 15766.179 15766.179 4862.2231 6919.753 5760.6242 5772.9008 4175.1499 2706.7762 13116.8355 5420.7644 7877.2783 3385.1713 3334.1363 4281.8721 3488.1956 5144.0574 260222673 poba Organic Remediation Aromatics Aromatic carboxylic acid Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 4051.154 14575.7287 10961.6589 2620.5738 4408.7831 6584.3272 2949.2998 91189.1007 5472.0293 9001.0343 4370.4346 4370.4346 8345.1896 5489.7827 10126.4864 4381.8531 2767.1821 8153.4658 2661.7681 10968.6148 4683.1067 6669.6446 2515.5363 4186.813 7018.643 4974.5384 78185961 sqr Sulfur Sulfide Oxidation NA Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 10383.7183 8828.5262 6063.0618 5975.7595 10575.36 5739.1939 119952300 terc Metal Homeostasis Tellurium Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 11585.3838 5936.8314 12474.6872 5452.6747 9272.9439 6848.639 6225.1528 10773.4784 5119.38 173771.0197 10068.4414 13594.9637 4658.1026 4658.1026 10177.7697 14310.8017 10077.673 9883.0763 32333.0322 12382.5405 3971.6226 4621.7432 11880.4274 5313.1487 22189.3623 13865.0301 15775.1904 5084.2567 5836.5306 9218.9254 6187.4592 12695.4024 357080263 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11682.3313 7922.077 41309.9152 43345.3857 9698.9938 6770.6027 5289.8793 3973.5548 4932.0696 27161.6712 165759.358 9908.4031 10503.521 21533.402 9520.0025 9520.0025 7561.3748 19844.1976 11642.5314 9369.2837 19469.4914 7494.7051 5975.2476 7038.3522 13279.6337 4232.4933 31007.8354 20088.7066 13006.7008 6947.6726 11621.0452 37338.0086 3612.8525 6947.8727 377807381 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7164.8289 19853.5666 9772.7419 3276.6333 11320.3404 5627.3478 24706.7059 4937.9802 4772.7206 4560.8397 6619.5448 3353.0121 3353.0121 4534.1607 10863.6496 6745.8354 10514.2133 4843.8107 2901.669 2798.2659 6760.1795 6773.8741 11075.0372 8162.0549 14962.1361 3894.3142 5675.846 6177.5786 4742.8952 5330.2627 189210245 protease_serine_fungi Carbon Cycling Carbon degradation protein Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4769.0076 4609.6205 6668.4853 77137.7667 25417.8809 8325.6717 4747.5038 12763.5662 12763.5662 3844.9253 20906.6535 32586.093 19430.3266 17524.7138 3497.6611 7503.3045 4831.9621 8929.057 5739.4332 8341.5861 1843.1874 18267.9925 21970.9399 2370.605 6195.4763 357225497 mer Metal Homeostasis Mercury Detoxification Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 16863.4013 11878.314 7104.2242 17084.5672 7723.9244 7050.4183 8764.3447 3615.7642 12122.9625 9357.99 9871.22 140649.172 12684.2148 19253.5381 8784.5782 10092.8365 10092.8365 5341.8055 24721.2707 11096.7678 7459.9604 10491.0482 9909.8567 6077.7546 7456.0609 21077.9952 2789.6676 17445.7922 14104.5407 18946.6758 5882.8485 12034.4171 9947.1449 6536.2635 13869.469 254266623 soxY Sulfur Sulfur Oxidation NA Methylobacterium extorquens DM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 4278.6842 69186.5495 7018.7462 2810.4747 3041.9938 3512.8134 3358.164 60159.0971 5920.1822 4488.9782 5021.8203 3412.0424 3412.0424 5820.1438 3524.3115 17154.729 4254.5095 3248.7119 6742.1977 2228.8587 7006.5974 7084.4326 2295.6981 4387.2369 2767.6157 2319.2403 123967463 xyll Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 5602.8758 6867.146 10401.9658 4521.3967 2412.1096 1948.5112 2853.0223 4232.7443 5361.0961 6558.8718 7810.1731 5068.8286 6548.999 6832.256 5247.8527 16285.8739 6765.6204 10975.0675 7470.6943 5766.7968 5828.0141 2528.8722 3848.8829 6920.9989 3490.8922 11665.1228 227819372 narb Nitrogen Assimilatory N reduction NA Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 7188.9327 12417.5694 4308.4524 4715.5934 5663.4584 7610.9877 11006.4804 3551.2498 156724.3172 11473.8697 4437.8345 8320.5583 4617.3982 4617.3982 5700.898 13713.2358 8395.8267 10672.4624 13083.995 11480.6668 4131.0174 6241.8757 14572.152 15690.0251 17292.6797 9724.9906 12188.4579 3400.7114 6071.0165 7688.2634 4097.5681 28900.2922 328841616 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 130857.6072 16472.805 4863.9257 14608.6535 5425.4039 7682.0399 27731.6976 5775.8649 14338.7131 27847.7743 247483.8443 17308.5644 12647.0733 13329.1413 26053.5536 26053.5536 8503.8492 40083.864 12320.6098 21909.3554 10048.9079 9240.5718 11904.5407 19318.618 14302.5142 15572.7601 69507.1061 15492.9368 27333.6918 14224.0925 16426.6363 20611.7586 27568.7959 43401.9674 83593495 ppx Phosphorus Polyphosphate degradation NA Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 296985.9325 12614.463 4684.0663 325520155 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. TJI49 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 64280.2699 11774.6107 22005.4816 15213.3833 13716.7736 24432.6237 21313.7628 16746.5235 25292.8752 16612.1249 489514.3814 32532.2099 21403.3592 28160.0838 18795.257 18795.257 18664.3385 40501.5957 20809.5039 51132.9348 25163.2186 59757.7773 20902.8528 15866.898 23790.324 28611.8663 125300.4188 13710.2922 31368.4347 19710.7094 17834.8232 31232.9324 21444.0389 37978.1469 323128126 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 7655.2054 5006.98 9267.9388 5677.6824 5860.4434 6918.1881 4490.5372 2352.6186 216703.8387 4992.9045 6822.3403 4231.491 2952.9843 2952.9843 5159.7022 13620.2549 8192.5849 794994.4928 10772.4061 9975.9562 4753.7287 4707.9982 16727.17 5864.2345 17432.3219 6997.9157 9776.1481 4858.5883 4996.6657 5608.2616 4357.2278 15218.1423 355335673 ppx Phosphorus Polyphosphate degradation NA Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 168472.5168 193226.6722 46563.1694 22454.8067 48858.6856 4812.0176 24327.1139 28187.1496 27480.124 17769.1419 28786.6749 30387.7564 507851.4154 28502.439 21603.6564 15554.6136 12224.9298 12224.9298 21917.0022 30643.3081 30239.8076 35502.9538 76010.3104 31064.5512 16059.2803 13773.5876 24706.9203 16081.419 108647.7522 33058.267 29012.8913 17527.0947 35001.1314 22445.8794 16272.9631 98629.6311 73538820 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 5047.7061 4455.0697 1933.7132 64842.9102 35914.5968 4327.9632 2760.5997 2760.5997 7331.3433 6878.5695 3477.4842 3165.4675 122091206 endoglucanase Carbon Cycling Carbon degradation Cellulose Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 5694.6514 5840.3242 1901.3069 2107.9045 2716.0637 4927.174 5625.988 2451.6297 2317.4746 7855.0811 5979.9279 4575.036 4575.036 3653.4439 10158.0752 7336.2299 8819.9866 6056.7155 5196.7416 2759.6567 3798.1456 28569.1582 6508.3759 16115.7473 5572.0791 8855.3524 3449.496 5885.9477 4824.5152 3896.0121 9816.8831 270506317 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 65296.5169 45488.5934 85095.2876 22646.4372 31771.0102 15171.6221 20968.1673 38444.1715 26775.8278 37115.6748 16723.9416 113269.7895 504244.6932 45558.469 525595.1984 32148.9451 29232.6046 29232.6046 54611.2025 59805.2066 25143.6506 53852.9917 49011.425 52301.1063 29743.8892 27046.9595 32756.5523 24147.3902 65855.9948 41229.4783 121404.445 15689.101 106660.8641 35171.2071 23948.1574 125619.9639 298590857 nitrilase Organic Remediation Aromatics Other aromatics Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 568078.8863 11719.1513 29313.0537 1206921.8916 27844.186 18473.0292 20562.8238 25096.3358 23420.2501 25651.2687 19622.17 588881.4884 42571.6437 44231.1768 34965.0635 26982.3639 26982.3639 17041.0151 39669.0267 23233.115 53671.108 25669.7569 145615.5292 12810.0161 14142.3071 33008.0243 9767.4101 222410.801 88478.1014 193954.3176 10161.9797 17113.33 18321.6245 16843.4504 114689.4372 118036452 pcag Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 17951.8289 20782.0904 30293.5123 5303.887 5138.9331 8541.1883 6475.604 6908.9745 9525.616 214815.5362 20903.6933 7540.5604 73610.4897 8477.7886 8477.7886 4391.8445 15634.8538 10067.8688 7764.9841 13357.5043 8738.7857 4441.0906 4063.5324 11455.0905 9331.1968 19649.36 10764.8117 9528.6634 7091.1633 13295.1272 18719.1345 12966.9662 11307.249 88702645 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 20696.065 21674.7868 11254.4554 9904.2188 36077.3923 18394.6978 17104.7698 38625.1585 11973.2485 13527.6464 310405.5501 15900.4751 7055.1071 48608.3717 8676.5837 8676.5837 14646.8795 24481.1021 237337.7392 19335.6831 30990.8915 19370.4869 11644.851 14548.4408 14233.5931 8850.8891 35559.8493 27480.4488 18338.7859 7149.5425 12265.6092 14612.4351 9295.2386 16040.4127 218522407 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 94950.7777 12560.1847 4960.6672 12513.0936 5851.8627 19775.7951 84120.4922 27891.5551 28758.3614 450296.3498 32262.5623 58470.9322 27544.9838 13643.3145 13643.3145 11736.3739 228795.452 30100.9632 52381.2979 23437.3646 8590.2906 14524.1164 52881.8823 40746.7624 24516.0337 56979.0025 73209.8744 44783.0497 6586.1391 14902.3341 17946.5178 31480.9115 151689.2368 359738799 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 81240.2468 34899.6064 81652.9348 105340.0095 46846.0579 192084.0928 93701.7114 46372.3141 40994.8991 71413.3143 90625.0673 1781054.6238 171169.6878 96671.6871 123443.1374 64276.8366 64276.8366 61216.6572 90482.1829 46006.1573 79228.0006 73447.9596 53622.4786 52646.9293 43860.1694 280611.0756 87146.8421 158390.989 86652.0123 109045.709 41402.6965 81166.2643 129287.9907 37765.9434 78678.4361 118720167 arsc Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 238901.0033 453842.2114 154945.1771 127929.3258 2169312.3273 159285.8522 296563.9462 321996.5573 240824.8741 390774.4827 364555.2317 233842.9519 4506076.3788 516966.1241 449562.7737 393399.2247 169432.8757 169432.8757 296978.4579 328205.3494 290770.1963 574800.1929 367990.6717 358190.2426 196392.7184 167457.7088 215641.1102 165001.2014 680384.3301 338678.0818 277110.724 144946.7923 185525.4664 346904.6076 160231.0384 368301.5151 260161877 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. J-13-3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8915.1762 3264.784 8387.1444 4044.0135 273930.1116 3875.1718 7976.1366 2317.851 4723.7991 4643.7315 2964.6258 334696498 ppx Phosphorus Polyphosphate degradation NA Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 7038.6622 4207.3399 6920.1643 2261.1809 4283.1018 5754.6306 3305.1868 91302.1742 9725.3772 5556.1372 3693.3291 2179.8885 2179.8885 4221.1959 10389.8547 5524.552 5473.9671 9150.9802 5713.9164 3912.1479 3896.3835 7420.8613 3894.5094 13661.3973 3929.901 7634.4259 3554.2523 5099.0705 5078.6349 2865.7286 9150.9158 189193483 cutinase Carbon Cycling Carbon degradation Cutin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 58817.1843 28870.7804 131450.7248 216633.9479 40919.3873 16639.2541 51715.7536 54700.4485 35165.5074 42607.5972 63709.7146 101857.2138 1178118.8733 77813.7712 69192.3281 63268.4116 106916.4062 106916.4062 30067.325 95013.8011 57681.3266 330785.7054 93327.7623 58472.7709 52651.1174 52164.6522 57843.7932 89865.8433 138908.7419 84807.7314 101214.8599 40385.7476 76074.6221 115007.9765 40094.2804 105854.8896 257736452 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 35062.3573 7221.6513 26371.1009 9813.4 5088.2808 7952.9242 16531.1326 9158.168 164927.3619 18448.6901 11380.2897 9853.6207 5080.3792 5080.3792 15676.3398 19613.5547 18649.4626 15573.5709 13875.8626 23031.6029 7234.9431 28369.3822 17781.0155 6948.2083 32129.6935 12120.7931 16780.0629 13678.2884 8657.2939 12924.7634 8419.4379 20864.7727 338170985 nitrilase Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 12168.9178 9561.6035 4278.2695 2326.0592 5084.4481 9072.8937 7176.261 342669.191 11427.4338 8297.3439 6743.3911 10916.97 10916.97 3544.7988 9225.373 7207.8452 56684.2479 13701.4031 2699.9025 5893.7591 11427.3834 3038.3947 16490.3749 19860.1937 12729.8192 4186.0557 12052.494 8654.8905 5189.8357 32562911 bphd Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. JF8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 108676.2349 15709.7841 69839.7959 107966.4202 90270.204 73907.458 76309.1667 706219.6941 23515.0208 87573.8338 173305.2935 140526.8081 1948054.1534 150315.2638 85112.0793 115852.4603 121964.6107 121964.6107 61482.5852 271421.6112 68943.6355 104459.8544 414963.053 125880.2702 102962.8835 85940.9682 180869.5479 142186.2642 305297.8903 364963.7298 129745.585 122427.719 108223.5399 174959.3853 66875.3108 127008.9695 192799554 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7382.4971 1669492.7893 61975.7851 7763.1794 8113.7214 17590.9907 223180.2584 15757.5632 8260.748 7942.1327 109107.3884 17847.8228 6806.6657 73943.6234 7347.0433 7347.0433 15744.7309 61246.8844 10072.7312 3820.0573 990916.0543 10012.8891 4196.4539 8338.4296 19321.1242 6219.2477 50865.7218 19292.7194 12766.7382 26660.8839 9740.3811 19964.288 4031.506 4566.7112 302527766 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4867.1611 7790.0868 3191.0025 2264.6483 3357.6536 4688.6869 58929.215 4493.1676 5440.605 2212.4564 2212.4564 2869.9875 7348.8048 4928.1335 5567.668 7788.6651 2323.6242 2867.8869 8574.2598 2372.8037 10128.8935 4358.38 6473.0577 3171.7517 4641.8421 3958.6608 2182.6017 6082.7744 46307936 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7013.3857 8180.9515 12725.0535 14090.4402 4291.489 6763.3152 4468.7166 115762.7758 4314.2304 8309.7274 30238.4621 6332.5018 6332.5018 42507.8407 18588.4304 14638.0273 42431.336 22277.8317 350537.2267 8960.7562 3331.323 9849.1453 8278.2671 10985.0988 4102.6048 12294.2437 3637.5799 5264.0305 10938.3723 3969.4784 4368.7879 29610583 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 4484.967 7736.1759 8832.0146 5106.3625 6679.8528 10165.1705 123450.006 12892.3756 11531.0244 10172.851 10172.851 13169.8179 3382.2851 4136.6956 18076.0592 7912.0346 19886.8519 4813.6206 8426.374 4600.8116 4787.0862 7463.5633 389809383 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 23188.9703 10226.279 9244.6647 5498.3821 15069.6915 9801.1667 8900.3186 32598.2543 30107.1506 206433.412 21572.2874 16145.3656 11351.9951 24239.5913 24239.5913 12926.1629 31140.7934 9816.5981 21764.9222 68871.7716 16232.9599 25727.1391 18342.9086 19164.4015 11036.7398 39676.3306 31694.519 34193.608 6115.4796 15877.5359 33309.5655 22938.1206 22022.8434 378747744 aps_apra Sulfur adenylylsulfate reductase NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 283342.003 73964.2893 29699.5584 1524801.619 64112.2934 22813.8888 34995.5221 417848.6004 40968.1806 88261.8397 41405.927 53282.4057 1500945.4059 58608.4446 77833.7879 71204.1514 135356.2434 135356.2434 24821.0942 59861.6212 44615.5688 122253.5061 124667.8333 252784.2526 124511.428 47993.1877 987971.1775 163502.3535 91863.374 242379.4001 69303.172 42973.5205 31696.9901 65807.9527 360084.253 681646.8524 154304204 ara Carbon Cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 21721.5182 5931.0405 11406.9822 6904.8675 7154.5365 3472.7961 10359.4991 9444.7779 3964.613 244673.7857 9438.8531 7892.8183 9833.721 4302.7044 4302.7044 8114.2708 11759.8543 9177.9787 11179.3506 11861.5283 13362.5524 5324.5551 5078.0605 12285.1963 4358.56 17775.3633 4107.2 12093.8745 6342.5254 5979.8591 6826.7196 5692.2872 16283.3412 324982946 ppx Phosphorus Polyphosphate degradation NA Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 86100.1639 33004.7492 76901.0873 467168.6657 168612.2386 22506.526 104134.6174 156509.0058 114843.1379 67648.0031 98506.1911 119308.108 1732585.7385 91092.5671 155779.7567 194983.9502 80109.7185 80109.7185 187740.7252 264355.0851 59864.4545 68796.3712 75977.3577 131437.2541 86252.0208 119942.3467 102778.7189 167137.7121 345068.8286 93214.4007 109659.0314 63797.4715 158769.6753 59024.8738 34125.6152 83240.5269 66043936 atzb Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 12598.4913 133093.4094 4979.4269 3555.588 6265.8157 10448.0758 6373.7382 300492.1587 8715.8386 13031.3151 32908.2645 35910.4691 35910.4691 4878.4892 11371.6379 6113.5619 6823.9638 13655.7748 4441.3978 31554.4933 20833.9473 6821.8292 12792.8881 72631.6325 15810.7506 12205.582 8908.0186 12956.2786 20765.8915 6389.4225 10108.1587 145215417 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 7817.3929 10193.6239 34045.7711 15342.9967 39035.2885 8693.3851 4585.8749 7123.3179 9738.155 9850.5364 179703.1579 8613.5849 22843.1291 10569.8866 7358.2361 7358.2361 6523.9337 17070.055 15666.0195 4236.1344 7198.4665 5988.4179 4917.422 5572.2732 22771.777 6505.0424 32605.0323 18561.9815 21156.7016 8424.2787 9501.1192 5458.4077 4019.3084 8680.0846 271500632 rgl Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 3450.5063 4778.4482 339021990 nitrilase Organic Remediation Aromatics Other aromatics Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 59772.4579 13615.3319 1293361.4797 8174.0348 20582.7595 4636.398 9009.8133 2493.4668 8010.3625 6193.9397 10667.6867 130995.9527 10861.0685 10823.468 6269.4368 4559.2292 4559.2292 23673.6235 23347.0654 12198.635 38364.5222 6723.1374 129635.7577 4416.9025 4884.8913 10410.7352 11008.7158 219363.2996 87494.6668 122133.4757 4141.68 5474.4016 5541.9627 4489.5033 100393.9405 307095234 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 5069.0008 70438.7133 15213.4044 39311.51 10590.6046 206792.3196 11664.999 943953.8628 17213.3822 120287.9676 13997.6814 59381.2646 59381.2646 5827.4982 14701.6144 12040.4081 20532.3563 9171.4259 5847.1401 6193.0299 31362.5435 17007.8423 40897.3576 46487.1791 14201.1613 16093.242 5888.0351 16554.9044 17051.2564 29923.7137 30674.189 356877783 endoglucanase Carbon Cycling Carbon degradation Cellulose Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 68516.9379 99275.7174 22227.1123 48007.8449 17235.8899 33806.6415 66223.4174 58158.2904 34571.3003 75854.6022 80432.0666 1302107.2424 73567.2267 87515.089 550899.302 61269.2265 61269.2265 224554.9733 117037.6912 52811.7574 64226.15 244791.8369 75825.6381 87303.5243 63115.0568 63341.4188 55540.5144 167818.7001 88545.5061 79226.18 33000.894 126234.9309 87620.4415 37152.7396 108561.1821 254465792 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 33391.4701 14596.8666 55066.4619 48414.3765 10829.0355 86384.0764 40059.2196 28459.3281 26842.0519 44770.4386 19901.7409 526019.9616 18996.321 59806.2581 35536.8814 23526.289 23526.289 20299.338 40799.5422 51456.0856 27322.0657 42040.9846 77538.4571 19940.1685 23761.3219 53424.1204 19634.6816 360383.5374 85468.8384 52090.7724 68287.442 65741.432 87244.2852 35562.3413 44318.9039 78093546 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 40271.6288 14905.0049 17523.8099 26436.2648 9197.7942 26250.1843 7906.2364 22449.1328 11325.985 16467.5514 21267.7059 21853.5314 410011.9383 22150.8633 29413.2428 15314.052 21102.3829 21102.3829 44919.7234 38369.4058 28170.6055 41729.8109 104068.2071 43368.7807 11445.562 82824.123 30842.7732 41987.7128 39311.6108 16166.2784 65315.5897 12519.5031 16442.1914 23022.8715 11148.3067 28770.6726 254391488 amyA Carbon Cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 11693.5484 12503.5173 6826.9874 16569.7757 5256.335 12486.7633 7231.9355 3227.2975 4566.2541 7548.5451 6409.2198 131216.6138 7751.0835 6600.0956 26043.3874 5463.6189 5463.6189 6955.0207 15250.2134 11428.441 8669.7524 11342.4164 8827.2727 23898.3271 5458.082 11051.7681 31503.4707 30926.7431 6487.4488 14929.4989 5023.6756 8120.9697 9616.4011 5115.8296 9865.6128 118424427 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7611.5908 51269.9401 4167.4527 7879.2525 3267.745 3841.71 2346.9774 6546.7684 3399.4466 11341.3533 100206.1829 4014.6503 5374.4622 11101.2577 5031.9239 5031.9239 2532.259 5880.0846 8695.8933 722760.282 27350.0842 6712.7408 3607.507 5559.6259 2238.8787 27415.5843 11728.5744 7560.9895 2651.4371 2710.2343 3119.8287 363914.6025 209521737 phn Organic Remediation Herbicides related compound NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5603.9417 3583.455 11371.9245 4462.944 17156.2675 3777.6549 168805.726 6015.1679 3965.6969 12343.7072 6525.0541 10390.6044 16205.2642 3777.2741 3579.7631 7971.5505 4193.4368 17617.1101 11191.6725 11358.5588 4318.132 6678.0981 4823.3431 3924.9668 7267.2732 347758538 amyA Carbon Cycling Carbon degradation Starch Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 4114.6944 20429.5635 2730.9978 2108.7921 57480.6673 2157.4282 2687.2774 4701.5893 389783605 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 16113.1881 24570.9992 11297.2393 10398.5909 11912.9386 32108.1453 6004.204 13719.8651 17085.231 11092.2193 269898.1475 15463.0492 10082.6029 9355.222 7556.8366 7556.8366 8324.2137 22472.4136 20479.2811 15301.9859 74183.7092 16124.4003 8065.3675 10780.8041 61479.8278 22429.9257 42134.3114 16427.8394 28626.5312 11274.3513 22669.8295 16674.3729 8422.3124 25477.7728 116000792 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 13937.4181 5555.7853 8729.4164 10284.4322 9110.1945 14353.2402 10261.3616 11232.9932 18164.079 10925.2485 12730.4552 167953.1594 11524.7822 12903.9621 8137.4993 9562.6855 9562.6855 9141.4718 18298.1589 17208.5308 16327.4128 16718.5763 20497.8626 9158.7188 9624.9589 19185.3284 13550.8135 24507.4109 9272.9996 16857.0096 11153.464 11057.5237 9528.633 9436.2684 24036.8692 407786954 cpna Organic Remediation Other Hydrocarbons NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 12739.3932 12257.81 14391.2065 11930.8917 10551.4486 11440.7612 10395.4109 102574.893 18840.1543 7898.3237 227506.1986 13879.4583 18316.0157 20031.1741 15277.528 15277.528 10873.0394 19400.3942 16316.0462 20505.8322 23124.2573 25154.2149 8853.2287 6251.1791 13620.2191 7486.9021 33126.0616 14802.8416 18126.3651 7463.6631 10870.4972 10386.1122 9662.0284 21916.5582 225570987 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 586124.5654 834505.0477 2002418.4442 591842.262 771267.5262 194280.0251 501971.853 477518.3138 312535.4486 307749.736 478302.0425 376090.9149 9238040.5915 488510.3413 730107.2213 1756518.0656 486483.5948 486483.5948 362200.0217 477047.8424 276223.3954 936440.1371 462303.2163 606888.3132 358045.9667 254278.6009 508248.7571 271138.2339 1038185.8864 349040.4338 492206.662 365985.0837 349875.9869 380835.07 353883.4859 636443.7495 37726850 dsrB Sulfur sulfite reduction NA uncultured prokaryote 7118.3665 5822.5688 7234.399 8012.6249 8316.6932 3144.8982 6450.2762 9260.0913 7614.7949 114500.0195 15218.9093 7162.5935 7482.3479 6983.3609 6983.3609 5036.6879 14819.9182 7434.6324 26134.5587 8365.6471 8892.8278 3560.9199 4783.2524 14323.0939 4045.7492 19463.7817 14629.8606 13807.4297 5301.4421 5692.9481 5557.6588 4366.8546 9651.305 167842053 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 7329.6064 20035.5576 46794.8899 5014.1056 8044.1514 16964.059 3693.6619 15235.8221 21572.1119 10331.0283 137762.6169 9162.2409 8542.1996 7107.0804 5603.2298 5603.2298 6307.5422 35297.7711 22070.5248 6054.8844 9065.0598 13677.6335 6711.1826 8902.9136 13227.9241 13468.7257 18918.1775 13888.2045 13870.8122 9642.9682 12465.4142 46725.0454 6232.0827 14036.9225 115519664 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11433.2792 5548.4691 18127.8908 182241.6634 50426.5581 9539.8008 17688.7506 19215.9576 29430.1388 29305.1974 23736.2225 691941.241 40701.0773 28488.4724 45023.6739 28515.1567 28515.1567 12415.6698 25988.6222 13964.8681 23748.6135 12830.9274 44421.6387 5568.8362 18392.9747 51491.1294 8013.3575 54879.2139 24388.2433 37068.987 18574.7715 17283.2693 15093.2064 5402.0366 15270.3463 315649563 terc Metal Homeostasis Tellurium Detoxification Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 19553.9278 28564.031 35028.7652 16644.1213 18917.4395 26171.758 23905.812 27893.7041 21204.9663 24569.0088 14919.4534 467648.6002 23917.4681 30440.3272 18811.6352 18956.9713 18956.9713 19612.1588 38167.4922 68614.5747 26698.1029 22622.4981 29204.978 13181.3526 13894.738 30661.5411 18785.6776 43574.8567 124794.0454 34595.5913 15753.2535 16809.1018 37325.4555 16665.8647 30329.7252 158424506 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 4190.9607 3953.4877 9198.8732 3438.8164 2595.133 4584.8313 90557.4872 4172.1264 4929.7203 4392.3091 6426.9204 6426.9204 3439.5989 3616.1525 3492.693 3045.8309 7749.6967 4029.5386 12044.12 17518.9811 4015.3338 4345.9296 4911.2253 2939.9018 293605472 nagg Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 14542.24 5164.6642 16610.4787 9454.0534 4581.4406 6501.0489 5352.4903 11417.5104 9487.4975 11146.862 7122.9746 693291.614 10205.0929 9948.2642 9441.4131 8208.7591 8208.7591 9890.1705 16746.2721 9665.0784 12439.395 22207.2036 14268.1339 7435.7665 8902.6293 14406.8699 6513.9208 28682.5409 7734.4172 13763.7397 4473.7453 9597.9937 10425.7991 9734.3554 15806.079 2649214 arsc Metal Homeostasis Arsenic Detoxification Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 6678.4315 8876.2159 22605.1665 9295.9925 5349.4656 5425.5421 2587.6014 7030.8162 7854.0617 8002.6944 196263.8974 8543.4502 8474.7562 9725.9716 7558.8216 7558.8216 5560.9082 17025.0886 11154.78 7553.8508 8397.7614 7010.8701 12659.5368 5357.8845 18101.0175 3961.7612 21717.5126 19538.8424 13051.8743 4951.7594 13615.753 14829.2288 5798.936 14190.8797 406718231 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 29750.2386 18793.6152 25131.9705 39940.1437 25071.5926 13841.8118 111881.2923 26153.6803 13862.5719 21949.5788 35929.3542 25330.0993 813571.0641 33102.2049 37826.2357 29563.7128 17400.3433 17400.3433 21955.4951 39193.8343 30215.3897 26697.4536 29364.4398 64921.7776 14211.3377 13510.0481 36814.5342 12952.5192 53214.416 23818.4938 42961.663 18867.3508 16975.4468 24551.2795 29619.1157 46474.1783 156188199 mauab Organic Remediation Herbicides related compound NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 91670.0103 13348.7712 38644.5429 20850.9099 99291.5923 144372.4289 24464.9579 99178.3582 33086.7654 60399.3039 208948.4809 75088.2095 908370.8684 57615.4019 90133.0701 87225.7293 65344.2456 65344.2456 61071.2689 81969.2797 29589.7303 37555.7259 128914.4549 57835.7653 51972.8254 93269.9661 103286.5163 57866.5416 149423.4468 34295.1648 94197.9756 29206.7647 158208.7841 106171.1391 30110.1214 47882.496 312168000 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 13612.1934 23315.282 11058.591 7396.4909 4991.4889 13137.2787 14899.9443 15944.0311 9132.8321 13102.3432 16001.7234 107172.0587 13996.7872 50481.7552 45372.6946 11739.76 11739.76 8761.3396 17863.1458 66189.1157 20012.1145 14127.7087 14298.2768 30625.7199 17898.645 11849.9916 17596.6718 35085.8395 9161.8424 55354.4087 27915.2523 14131.1031 35143.9584 11999.8635 15597.062 255957255 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 15195.3471 12780.6832 12056.7155 8786.6709 6775.0802 17357.2056 15455.8344 5725.2037 10892.8425 11679.7231 14477.6306 96350.0999 5884.559 12908.9501 16958.4237 8102.4357 8102.4357 6864.5505 24077.0655 12210.1078 32235.9889 20304.4094 62706.7724 12429.4531 22860.4837 19488.3733 13764.1681 48095.833 21257.2063 22633.2109 9175.2532 21889.2558 13470.2911 23673.0379 19135.3361 113880112 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3726.5243 2122.7248 4196.7812 7493.6549 2750.4949 63161.3618 6378.1913 4499.8906 2193.9597 2193.9597 2901.9194 3618.4164 5039.9814 7705.4819 4107.6678 5811.6243 8057.0259 3797.1978 5747.9199 2157.328 4969.3807 5376.6095 10795.5206 83317116 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17195.0713 19316.7362 65355.7968 14445.4303 28011.8914 27244.3768 11651.7731 24068.0141 28789.5718 19615.6576 8722.6155 597269.1051 39036.0069 17688.8685 10175.7931 9281.8021 9281.8021 11967.4272 40210.6276 14646.6056 16854.8131 21880.8645 14229.6956 7847.747 9734.0588 21074.067 10120.175 82628.4093 20562.0314 19055.9719 9443.6265 11586.6065 11612.8645 11317.8431 22003.7382 339451272 amyA Carbon Cycling Carbon degradation Starch Leuconostoc lactis KCTC 3528 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 11563.2813 16317.5484 4221.524 8305.3447 6894.6111 5332.686 14155.2037 12294.8302 5599.1242 5834.4771 18462.586 7912.2773 7912.2773 3398.2581 12067.2592 7484.2206 4272.2641 14862.2657 16395.2577 8311.6024 6231.2619 5681.7933 11950.8873 38687.1989 7680.5588 13982.7725 3855.5804 20667.8481 8538.1301 4197.4936 9773.6831 104783508 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 235077.4895 1233960.4125 498933.8235 542038.0333 525683.0128 190486.7167 29803.6935 176225.7629 147772.9789 122539.7455 131610.7746 181986.7021 6281764.3671 196718.9989 247021.3216 336588.5015 210097.2437 210097.2437 169231.7852 262454.9171 109309.2062 311151.0426 326772.911 42490.2653 98783.8044 128056.6791 494036.598 296967.41 380875.0584 342800.1675 542322.0362 119762.5628 132371.9736 189438.8527 85983.4281 334576.7136 323365290 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 19657.8681 6819.2606 13470.4289 10931.6528 7731.0036 12785.7637 6995.8166 10761.2849 11983.9578 6145.3946 228914.5003 16402.7698 16406.4166 20965.5354 6336.3084 6336.3084 8553.0125 17826.8543 14443.2058 10780.3476 15260.5649 16017.9547 7230.6469 6723.8422 15290.0978 6487.9338 27251.0937 12474.0884 13825.8874 6930.8774 9652.1853 9163.4661 7579.4786 17605.8334 254431701 Sir Sulfur sulfite reduction NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 26980.9235 6999.9775 7105.3774 3674.1845 28054.5402 2756.8729 10363.7872 13371.5449 11457.8681 232220.1553 9475.9118 13350.392 22322.7258 13070.9375 13070.9375 9257.178 13285.5553 6467.4432 14111.7346 23384.7469 12278.6632 4354.5705 5695.873 12290.2536 6218.9854 14184.6541 8009.8448 15127.1362 6760.5671 6983.2376 11470.1754 4341.0249 8113.6014 6460756 urec Nitrogen Ammonification NA Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 21996.3896 10672.263 21265.9367 100429.7337 31734.7945 8836.9732 22667.6417 8451.7199 24197.8021 11658.4207 32908.6165 11537.1292 357425.3194 14979.4321 20066.2712 12887.7342 32941.281 32941.281 13084.8436 18730.5221 11302.2326 14863.0013 31237.2153 45796.4122 7989.7616 9658.5393 16666.5827 10681.402 23275.2264 8986.0387 19677.1225 12082.8342 10593.8003 14193.7887 11042.3198 17000.1596 184200181 nira Nitrogen Assimilatory N reduction NA Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 21819.3876 2608.723 6222.2477 6605.9711 3507.5662 3283.0703 55292.1435 3418.1574 6016.0046 6644.6818 94318.862 13455.0881 16555.0008 2768.7144 3709.0153 11812.8586 10413.0145 6067.4596 2667.3801 2650.1647 5704.0259 917496.9197 374097443 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 5380.3073 13432.2184 9878.2813 2181.3509 8870.7838 3476.6895 6935.7309 4469.7261 3661.1263 3670.7633 4208.6935 4208.6935 2607.2883 10034.3056 3843.6808 3735.1788 5630.6404 4122.315 6684.1838 6381.8865 3351.9307 10048.0188 4706.8985 8990.8365 2141.2509 7218.6282 14287.638 1950.5669 4707.8605 221068516 tehb Metal Homeostasis Tellurium Detoxification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 40939.673 10699.6042 200974.2291 26350.4952 73404.529 34597.3022 10700.4144 15438.0688 4262.0182 14889.1343 66694.3627 13472.9245 449400.1913 28115.2801 24338.5503 30815.5475 25927.9135 25927.9135 29668.4709 31329.6059 26127.3591 10969.5268 45273.3186 19713.5583 7008.2289 20927.0472 56647.3185 8687.5338 65140.5002 38729.3948 44702.4623 11665.2984 20200.3253 17683.8816 10436.0361 18483.902 334140514 cysI Sulfur Other NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 172834.2863 350583.202 9936.3202 4438.1127 3490.8632 5275.1723 3790.3384 7891.4462 4599.9968 10393.3064 4777.3621 7977.817 2323.118 6197.41 16231.8473 2674.0985 4697.1009 17996.9976 152028228 terc Metal Homeostasis Tellurium Detoxification Anaeromyxobacter sp. Fw109-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter; 7044.3898 2472.3097 4622.3481 6153.0801 4240.8973 3520.9953 5111.5393 4495.0519 2786.0592 8896.1833 5975.5569 6530.5063 2296.1126 3844.2857 5687.04 2337.7632 9544.3192 387888389 arsc Metal Homeostasis Arsenic Detoxification Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 22845.3136 901156.4993 10298.9381 22747.5705 29687.242 16449.6003 20811.7636 13093.0431 14271.5902 26919.7814 31517.2474 18467.2929 1310168.1483 24251.0674 23534.063 29574.1755 15081.5434 15081.5434 14336.3143 33926.4087 17263.9727 75115.585 29046.2887 50260.0969 18454.364 14727.936 28346.056 10596.0206 41487.6831 33423.0033 25180.2286 9748.8742 16646.636 16390.3969 14397.4243 26372.6686 357972041 urec Nitrogen Ammonification NA Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 12498.9563 14313.4484 25619.7414 14613.9609 8780.3552 2415.1871 7370.4717 7761.2053 5908.7336 271078.6228 4145.959 8482.1465 7892.9768 7423.8291 7423.8291 2909.5663 25336.2783 7021.7177 11840.6228 12050.566 13941.8748 30278.0653 8134.5082 7805.692 8338.5102 13156.6367 9462.975 24249.3363 3244.6074 18256.6404 7976.2617 4501.643 6671.6165 217977946 nira Nitrogen Assimilatory N reduction NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 9932.9111 70072.3744 8130.682 9903.565 4409.6569 3209.758 7765.3647 33862.5736 12067.229 151824.1324 11481.5359 8683.8209 7062.9734 4510.772 4510.772 7999.195 15061.14 7692.4757 10445.4773 11433.6721 14410.6475 4611.5232 4487.7307 10865.6374 5395.939 19838.5156 6210.9135 10399.6512 5861.5994 6041.6173 5783.4786 9491.7294 10079.8057 117675717 ppk Phosphorus Polyphosphate synthesis NA Mycetocola saprophilus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Mycetocola; 15857.8142 9403.7586 7212.4816 17358.5263 5472.641 10007.4907 7765.6392 5351.729 16033.7613 77206.3797 7723.2021 523773.0953 13698.3942 7506.054 11629.5747 12963.196 12963.196 4666.0044 18061.7323 37548.7287 17988.2534 50566.3045 7094.0147 5562.6317 6647.1083 20943.4611 12867.9204 17446.5901 15413.099 13637.4148 11346.9411 6232.0872 136545.682 8080.4141 13123.7464 372281399 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Oceanicola sp. S124 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola; 4973.0991 5574.856 20737.2106 2385.4332 15958.2101 11310.5145 16029.5623 78482.0218 7381.666 6732.6613 15505.5018 3716.5802 3716.5802 5984.5398 14347.0463 6419.171 5795.9385 9486.5386 9519.6644 2881.9137 3472.8328 9507.6395 3398.7822 11550.0754 8746.7948 13578.3367 4233.4784 4476.3922 6571.0405 4001.3409 15329.2959 359458005 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 13990.9793 17147.8713 29868.1841 13735.3857 6224.2961 15656.0163 12524.7375 10837.5652 11257.0414 20262.9692 27739.2228 236320.8207 12247.5533 35890.0408 19123.4336 14114.5905 14114.5905 15597.4145 22355.9344 21964.5187 10314.4657 18158.6699 10350.774 24813.7338 30408.6527 41525.4249 10386.1639 49005.3747 23692.208 26052.458 16426.012 14382.8721 19129.1298 20967.7137 17671.0214 384918343 ppx Phosphorus Polyphosphate degradation NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 24296.7897 18442.8074 54950.4978 58829.3711 11631.2297 11811.58 17811.4646 40206.8555 23993.0053 33824.1192 15081.8047 459619.2849 26000.0188 22128.0555 24443.9712 17989.7436 17989.7436 16795.0956 27640.5299 21205.6278 38403.3227 32469.8658 23629.4027 12899.2436 13756.8416 43652.4147 12310.869 49228.4226 15938.3433 36792.312 9861.3183 14801.2396 20096.7962 81071.8818 28071.1355 241765502 nosz Nitrogen Denitrification NA Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 36407.323 4017.2585 358050470 glucoamylase Carbon Cycling Carbon degradation Starch Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 56646.55 10387.6444 12593.5558 26553.4581 3587.1431 67817.8016 19118.2514 16111.9088 13819.9567 29546.0127 170548.5067 11629.8417 20104.3134 54403.9147 10735.5564 10735.5564 6375.8915 28826.7554 16684.748 30170.4881 34217.633 100752.1197 20187.4644 15354.5446 18860.5149 83773.8326 79610.7642 33994.5058 22167.8127 5227.8345 18407.3888 94707.4575 9290.8395 8633.4007 206686490 rd Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 4970.0496 19555.0394 5854.8395 3087.1479 2629.8666 3530.387 6099.018 2978.917 4665.7325 4555.6737 2993.8958 2993.8958 7123.8947 6955.0852 5171.79 3468.3767 3923.9023 8483.164 3014.0251 12177.828 9407.6285 9236.8444 2616.015 5183.6214 5848.8424 3002.5208 5543.6497 308067391 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 61439.9844 32619.3601 55696.5363 59022.3045 22779.7604 63215.9071 38470.5462 23473.1694 19468.9083 83055.7673 71537.0131 513412.6013 37424.225 154805.198 48348.6783 39276.2548 39276.2548 18642.6557 36364.9527 31762.7975 33937.0683 42778.9021 31261.2353 41587.3557 25110.2049 52966.4778 54671.5743 62918.311 33321.0058 40033.2378 14776.2335 19432.6104 26193.6811 22161.2406 41502.4119 254423661 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12000.8809 6848.8151 11683.7042 12627.1055 8853.8339 5992.0598 14121.9271 15337.7777 6941.5313 258169.4057 15006.3598 10535.8947 8730.0855 12209.0015 12209.0015 9008.6058 15943.7269 17206.4638 13491.9365 13502.6835 18562.6661 5853.751 21277.279 21583.175 7844.2699 31161.4639 15322.5108 16820.5647 7474.1332 9206.5503 9362.6937 8369.7152 16250.3723 212673480 phn Organic Remediation Herbicides related compound NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 278564.3571 19625.9999 15416.0568 63254.2363 63812.3895 16242.0324 12776.6754 45272.4132 38514.2718 73126.3057 57078.8364 56284.7632 969468.5413 78795.3443 72064.2204 96808.1112 72362.5064 72362.5064 44692.4497 98181.5722 71415.2863 52174.2119 117121.359 22705.3682 29232.9452 79342.596 93225.6489 76613.5612 144202.6493 61616.2169 66107.6261 89857.5697 48367.4998 42247.1208 67931.4623 42736.4126 212223303 gdh Nitrogen Ammonification NA Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 9200.5696 6254.5861 8206.9433 9111.8066 4507.8978 4581.8536 23720.505 7907.1429 12028.6529 7784.2942 157225.111 12353.8635 13764.6594 6472.2335 7150.814 7150.814 12759.8534 24891.5332 8926.6361 10659.3792 13676.375 9435.3301 19817.1824 5859.5911 9595.701 4007.177 26950.3375 17895.5126 14243.0656 7068.0384 8004.0649 15613.8176 7221.3823 10476.3342 148272855 xylanase Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 16942.5689 13371.0755 5372.0425 12437.6368 8440.232 7446.1393 36820.028 15332.1603 36503.3554 19001.9832 3148037.7133 16425.6385 22975.3369 53542.9893 75877.6711 75877.6711 10791.9903 17461.5044 24443.8285 34691.5917 25278.9861 22180.9774 7624.2335 16301.1283 46419.9072 18034.6694 28817.7709 12164.7931 34474.1334 6288.1448 39112.5043 16580.3267 5343.1995 13899.8939 323467898 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 17350.9131 5447.7718 46764.0703 5651.0154 11612.5401 24952.3703 14941.2435 9350.35 9729.0708 7681.6111 183644.5706 11328.0021 9079.5781 10908.312 8163.4995 8163.4995 16104.6844 20030.134 8923.3109 6460.9753 8963.54 12076.7705 3900.0066 7161.3495 25219.5781 10848.371 38093.4978 20199.7346 17588.6928 8565.9733 10371.766 8078.0936 5839.8202 12267.4512 116067548 nifh Nitrogen Nitrogen fixation NA Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7227.5666 4488.6335 3688.4014 4734.4442 125938.0221 4990.2588 4535.3641 3957.6625 16120.5312 6289.03 3601.9757 6972.164 2734.2808 2946.2207 7956.3154 2138.4445 9573.9118 4532.7192 6703.2388 3236.954 3025.3041 5019.2085 2369.79 8360.5831 13242044 proO Organic Remediation Aromatics Other aromatics Arthrobacter keyseri superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 20505.8485 7960.6992 5968.1602 141128.3609 4560.4111 11757.6231 20810.5429 3773.4487 19431.4818 34208.0061 34712.8525 230885.9899 18433.8754 15277.0434 32320.0029 17642.4627 17642.4627 17674.0761 62081.8907 26799.304 27848.8754 68519.3331 19222.3077 27015.6326 22333.5449 25607.9225 12320.0283 52556.5877 25456.2652 29463.7938 432572.1274 20352.9471 24603.3292 17264.183 86625.048 142852379 arsc Metal Homeostasis Arsenic Detoxification Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 15707.2286 14213.9889 11888.0694 21043.2998 6313.4646 26209.1616 3258.8891 18123.7532 16994.3053 10534.5483 233857.885 11819.6714 19152.039 22543.9138 27529.99 27529.99 12263.4227 23024.6771 9439.3209 4277.0284 10273.1197 14373.6305 7005.6572 18799.7403 115006.5806 10584.1688 30902.4509 14615.4548 20195.5152 8219.4274 10479.4742 11714.7596 2591.3367 4560.1653 343498696 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 62920.0889 145893.919 174512.0252 71246.3687 323212.4315 77006.7682 29742.3645 39005.2839 26800.8901 37945.7982 73276.1549 32733.2654 911227.3149 36969.9126 48994.5037 41639.8673 39093.3895 39093.3895 27846.8915 68617.1086 38685.5602 28485.4659 50591.3768 171421.862 31891.4114 31838.733 59592.3659 36724.8581 465177.2978 79662.6022 60987.3842 55705.2585 33858.8141 45840.4495 42417.2646 48499.0241 162281130 cmci Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4390.1519 22399.6609 4966.3378 2788.8875 2046.1565 5593.1424 3843.6283 168162.2626 15359.7035 5189.7405 14260.6264 4850.8941 4850.8941 4469.7382 7508.2326 5689.2364 4876.4071 4940.1196 7269.5422 8720.4345 2188.7322 136770.8494 14787.7454 8236.8078 2343.3331 3619.884 8735.1028 7184.817 375057527 PRI Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 3905.1223 3736.1293 2412.1657 5923.0864 3049.2638 6990.3185 8159.7441 4887.6237 100137.9651 3692.7596 4868.4905 6086.3033 6086.3033 3937.6453 10018.211 8360.1161 7764.4419 4415.677 6941.0806 3200.7095 4407.1035 7525.5929 2880.4894 11264.817 5701.8023 11426.9706 6404.1188 6658.5109 4349.7658 3390.0163 5691.1584 348015099 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Nocardiopsis sp. FU40 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 49180.5664 12975.8997 12717.7693 11908.0378 22120.36415 8390.7094 16640.7352 36448.50135 10272.84535 18772.4041 16317.3418 255182.5942 23249.6594 21582.3996 30046.77505 30046.77505 11994.5243 43263.84545 36224.6813 25036.19025 33254.8661 23342.397 16331.65995 24772.57985 11644.8952 35451.95245 19268.1691 31232.1119 8610.7692 25273.6328 20334.30975 13345.06345 19334.21615 326411946 nirs Nitrogen Denitrification NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 27364.3447 22853.447 16321.0139 10392.2917 21238.4182 7655.667 8036.3823 10584.2357 8359.843 213702.7011 10626.7335 28700.5766 7400.7367 4381.1014 4381.1014 38249.7818 18266.3652 16586.4324 19755.8144 111225.8559 13441.2503 13724.6618 9915.4498 17300.0963 9363.9317 28332.549 15797.3085 14099.9165 13732.4807 9269.765 8191.901 6114.7663 17292.792 341616214 ppx Phosphorus Polyphosphate degradation NA Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 416963.7797 115162.1919 249479.4037 498399.2999 160391.7954 44391.2869 193552.9352 242338.474 136652.3272 377512.2063 363170.3261 292697.4025 9393584.3821 405721.665 206699.149 460556.9787 192928.1763 192928.1763 248752.0367 420324.4836 218733.7881 311777.4911 356617.531 341789.7589 170784.7359 166881.3353 299172.1215 268736.6131 591695.6006 415261.217 136725.941 154901.1895 224778.2491 260442.5066 178671.3646 322351.0735 219965628 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5177.5175 18764.5163 6446.5273 4569.4569 3293.4344 35649.2483 7600.9979 7938.1269 154333.6746 9685.074 11193.923 7065.9198 5202.6773 5202.6773 3091.4354 10164.6591 6887.9959 8952.1084 3213.3396 4489.1216 12901.068 19657.7559 11991.7746 13773.8981 12907.1392 2816.7297 4617.344 6853.7188 4364.4962 8032.5168 363423220 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 7304.7932 5889.1587 5968.9811 7622.2965 6183.706 4194.9422 6594.8159 4769.0708 6666.2184 4733.065 85777.5216 5455.8401 5430.2755 4267.6872 3633.1716 3633.1716 8038.3147 9421.4929 7556.5159 4985.8839 10230.3399 8885.1815 3701.1711 9847.0656 12373.8827 3824.9781 13325.883 4913.3654 11531.9085 4818.0555 4784.6779 7936.8765 3883.9435 7167.066 302880065 PRK Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 4053.557 7672.047 3735.2985 4954.6022 5210.4462 5211.9703 3233.792 3233.792 4456.1668 18729.4257 2348.2127 8651.7057 3951.3501 6009.625 3029.3863 3475.074 387793500 terc Metal Homeostasis Tellurium Detoxification Solitalea canadensis DSM 3403 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Solitalea;species:Solitalea canadensis; 17838.9603 6043.4626 4095.7627 5983.6865 2425.1281 6940.9177 9755.7281 4074.7898 94459.7129 5520.2798 6428.4786 11078.0526 3089.8458 3089.8458 3578.4251 14516.2636 8748.435 11635.3593 15880.9414 3484.6322 3852.3062 37567.8834 4697.6941 15821.3254 11027.6714 10436.5914 3920.6282 15079.3554 6447.4601 3411.3941 13837.072 312202006 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Caldicellulosiruptor kronotskyensis 2002 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor kronotskyensis; 4568.1392 2544.6626 4276.1988 8174.5069 4866.43 3712.6814 57858.5796 10217.2267 5540.0374 3968.1932 2542.1699 2542.1699 3780.5938 8421.1291 4800.0681 8532.2634 7770.4933 4463.3327 4256.4084 7224.795 3333.4806 12872.6969 9430.909 3758.7229 4180.6165 4473.5576 4309.9002 10426.6019 260420749 TIM Carbon Cycling Carbon fixation Calvin cycle Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 51789.0615 51074.5154 28738.8027 41773.9991 8781.5283 157457.3005 11920.6564 6196.6023 50548.773 29646.4477 26264.2698 720606.1777 30097.3938 55377.2249 244908.1466 101344.5742 101344.5742 15679.9206 36889.0146 19037.4095 22120.4171 24417.0259 21188.6719 17175.4811 10169.3839 26857.0148 25517.5111 39092.6198 23021.0364 81778.5656 19964.5752 19589.9886 13953.5067 16979.7105 21967.9138 261857007 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 56806.2559 12095.1678 39297.9494 11190.2793 23660.5189 29451.709 27512.8607 16229.9528 30428.2408 25987.919 405601.1089 16108.822 15359.3298 47781.2746 30504.6353 30504.6353 12163.389 45245.6747 15606.3344 38934.5683 40034.2966 13657.4724 24923.4687 23985.1714 31751.6375 24498.7271 118101.693 70885.6355 37551.9162 19916.5125 28536.8847 32286.5352 19181.5467 32027.4999 255930971 Dyp Organic Remediation halogenated compounds NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 142885.9488 200203.799 63236.1452 45459.2327 23024.2339 31921.4758 83076.2425 53552.3886 51234.2935 132169.2701 69484.7446 2611570.1307 84294.2925 79619.7605 90489.1443 53817.1977 53817.1977 33269.2777 74469.7551 46427.6128 748254.6907 294571.631 153818.4917 39138.8132 39841.3414 53969.6601 38214.6556 190036.809 66835.6029 111600.3279 34485.1751 68280.8885 54650.1462 36830.9513 95358.9145 352682321 gdh Nitrogen Ammonification NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 7380.9251 9249.3836 4306.9162 7506.095 9367.9199 4016.3146 4336.265 5176.2005 5592.593 12064.5485 17154.4941 167072.5424 8435.4703 11927.8819 5600.6322 8987.5779 8987.5779 8714.3731 13641.4936 36908.444 17766.7642 18282.4445 9457.5182 6824.1955 7139.5864 23557.7352 5100.8905 23164.4602 12682.0532 16128.2456 4380.7252 7370.5471 10201.9352 5234.2177 26349.5471 261857093 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4868.7418 2218.7055 2642.6551 2111.743 3891.0047 4144.0805 3968.3363 89479.9537 4951.4253 4278.0719 10747.9597 12042.4573 12042.4573 3267.7024 11098.7407 5276.488 11190.5952 2943.6927 7531.9654 2209.4936 36921.0795 4160.0431 7070.7461 2082.3412 6865.2929 3901.91 4905.5285 323366416 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 7464.8352 10577.5112 23490.1467 7694.5736 5751.3979 4133.3557 4579.735 5264.0835 4405.9895 107272.2979 8473.0281 7482.214 6384.5196 3538.0303 3538.0303 4913.1352 11612.4833 8060.2686 4558.889 7110.2717 37326.0638 2774.4858 4124.6896 13531.7494 4646.0472 24448.9056 6818.0585 11312.9789 8156.5444 5265.1236 9034.5838 4749.4258 11061.5458 359423911 terc Metal Homeostasis Tellurium Detoxification Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 18682.612 21190.5072 277767.4575 7883.5438 20311.6702 6061.3724 33345.3952 18606.2936 9895.3104 30908.3301 113672.317 6710.7663 16850.9051 13145.297 18877.8431 18877.8431 7265.6959 21512.9412 9316.7084 13287.5656 163570.3664 18019.5498 10566.4464 8801.5231 16681.4891 43169.4413 37621.4725 24167.7898 25721.59 9487.1494 26968.9771 19484.9112 24602.208 17638.7877 318056197 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 4752.097 13753.0541 7330.326 6140.3229 7578.4439 8581.4608 2516.4444 10722.461 3896.3501 21977.056 2537.6693 86143348 terc Metal Homeostasis Tellurium Detoxification Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 5589.7086 5619.407 2250.5583 2388.363 5735.6981 4007.5948 10548.8063 10548.8063 2979.2629 5649.0901 5483.7531 4144.2917 2778.8464 8143.1115 2409.1137 5635.8505 5207.0522 2422.9192 2861.6716 4049.5056 6519.9856 402297439 ben_bcla virulence NA NA Bacillus alcalophilus ATCC 27647 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus alcalophilus; 5648.6712 5180.5891 2353.5769 3202.3292 3891.84 64143.566 4509.1336 4227.1996 3574.1617 8515.4839 5991.1681 5199.979 6743.5364 7215.1809 4410.2603 3305.9576 5683.4729 2050.9964 9442.0287 6650.6887 2604.7839 4852.834 3497.1561 3326.3422 5829.6072 296130017 amyA Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 62799.6728 82197.8923 93307.7549 123072.3706 295446.595 45306.4275 295328.1553 99658.4146 16509.8601 30229.0624 60582.4282 37073.099 1451140.5441 80173.5952 65729.6723 90932.8793 67466.6738 67466.6738 76936.2375 60991.5305 52046.2831 50029.9351 93952.8326 993204.887 21575.3371 34272.3371 83651.5378 31893.262 128990.3167 80807.4489 76527.9655 36355.7394 61777.2839 50390.9632 41567.6676 46512.9963 23305823 phenol_oxidase Carbon Cycling Carbon degradation Lignin Panorbis viscosus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Panorbis; 12820.9285 77697.5968 32356.3001 39820.353 10365.3714 11069.9342 6087.2646 14046.2402 11811.9087 5325.7165 198472.6455 18409.3284 9087.7374 16592.3512 6947.9046 6947.9046 8436.5426 21187.1516 13981.7239 8960.2645 438968.9771 23358.7172 7359.0849 14367.8246 14670.2382 6005.2763 20766.8201 12189.3122 17599.309 6507.2833 9858.2015 10585.1776 9920.1438 14935.7477 226941238 terc Metal Homeostasis Tellurium Detoxification Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 10542.8534 2076.9017 9441.5465 4949.4087 20446.3286 7753.611 91779.8101 4473.931 4370.8081 16163.1952 5400.4192 5400.4192 12737.53 10998.984 5464.2448 10053.2154 15256.9766 4029.0173 3219.6111 6482.25 15148.5202 7056.5937 47637.1715 7074.3225 105230.8072 5792.3674 9879.4638 7731.084 2706.109 10767.1762 116075361 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 29125.1342 21628.8577 45183.0059 24838.0609 8600.8359 4400.7789 30785.0107 17953.2295 16904.078 21466.4173 21010.8677 267016.1035 27672.2945 18610.243 39551.6388 157192.1083 157192.1083 14353.0499 43334.6738 71544.632 15543.2697 50842.0923 20477.802 27246.5101 27712.9705 23355.5358 61467.3605 65295.8994 19772.9493 36016.6867 15093.2706 32627.8898 54791.7465 20224.3175 173009.4508 29652626 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 23514.1173 7117.1391 14166.1694 8487.3101 10048.0833 337393.5668 40957.1451 15595.5369 12649.6639 9390.5526 264065.9549 17978.8093 20257.9726 14649.065 9267.434 9267.434 10534.9642 25525.5065 164387.9889 276437.6062 181170.9901 22040.2663 500585.6898 9490.9425 19271.5759 333090.8424 51755.4657 19222.256 26660.6276 442712.7696 13731.3053 36109.3232 13353.5669 27046.0587 242667495 chitinase Carbon Cycling Carbon degradation Chitin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 6780.3366 6232.53 4218.6255 4724.676 4815.7471 3933.1272 6336.7588 6606.9659 2934.8055 120832.6221 7558.0991 6444.1922 2736.5138 2736.5138 4955.817 10567.2184 8225.6547 8119.558 6188.5952 10622.4293 3039.7551 4557.9222 8555.8954 3881.4596 15613.0228 7091.8827 4743.7454 4452.3794 4916.178 3215.1643 10063.7247 413959889 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 55090.8385 17240.3003 12282.54 58209.4872 20553.661 5698.6761 11813.4672 15557.0071 30444.644 21566.0569 19815.3424 272722.4916 25610.4365 78904.5889 25770.8092 15772.626 15772.626 15771.2161 36029.9955 17490.9676 17829.6634 56144.2807 18969.6293 10888.2168 19262.3428 31063.3339 9028.7252 50072.411 30017.8081 26955.6888 9577.2427 51336.8 24293.5569 15703.5028 23673.2958 300702563 endoglucanase Carbon Cycling Carbon degradation Cellulose Ralstonia solanacearum CFBP2957 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 10283.9423 6061.0209 7531.1824 43045.8194 2066.6851 3499.6175 2161.0001 7997.1943 21043.699 3931.576 60844.011 5171.6304 5576.6974 9804.4299 4092.4311 4092.4311 9909.7498 14295.6828 8736.7914 25253.1396 14518.1378 7609.6623 3450.2377 3079.3361 7950.7318 5727.7601 13415.2682 8126.7828 18751.5906 3687.3619 6896.3927 15501.0853 3637.9711 9174.1982 84517059 dehh109 Organic Remediation Chlorinated solvents NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 5032.6947 12474.5622 6885.2819 82462.9013 8780.1703 4859.1327 2657.5724 2657.5724 10804.1945 3964.4138 5445.0356 3716.8846 13220.3106 2652.3575 10806.3007 7072.2284 51160.0792 1856.19 9582.8232 3674.2158 2348.0208 5180.8686 373102858 b_lactamase Virulence Antibiotic resistance Degradation Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 23861.8737 927552.2416 36173.0235 21573.5892 5006.0294 3411.9916 3561.0807 6174.3677 5591.2215 6800.2655 4357.6026 185007.5201 5931.2344 9451.1994 18805.196 6832.6677 6832.6677 4837.1178 15834.8867 7112.4264 7560.6967 5127.9634 5128.0498 4232.3483 6661.7969 5920.943 5433.0241 10802.67 8681.0748 10587.8649 2686.4185 9072.9515 24566.1936 2764.4211 21467261 badh Organic Remediation Aromatics Other aromatics Rhizobium etli superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9693.7049 7079.8148 9162.7376 10913.9574 4070.8843 5276.3333 4568.5078 11043.6352 16887.5446 6434.125 159053.4819 16966.0569 12248.7022 5568.1666 3474.0362 3474.0362 12087.2175 16035.9137 13228.4646 11057.5741 11368.2033 17488.0958 6149.4463 8651.4278 74621.2321 5763.6783 25936.8707 14268.0142 17112.4759 7014.7819 7353.505 13038.5249 5203.6226 15861.5772 294635429 arsc Metal Homeostasis Arsenic Detoxification Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 22789.3181 12062.0427 15560.2584 22704.8 6548.7528 5166.4575 15234.259 24134.232 6396.6651 205089.2585 13514.7258 14642.684 14361.1302 55290.8621 55290.8621 5779.7424 27495.7026 19783.4437 11286.2685 12149.8207 10383.9199 5758.3955 10403.8951 10079.3441 53234.3207 25396.3489 13540.3156 14805.2873 9497.2237 11986.2457 10339.6902 8254.9215 8044.2507 78357834 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 8033.436 5671.419 5485.6993 5148.8219 7870.0373 141535.5172 9229.8911 4699.9333 10766.6095 3525.0675 3525.0675 6142.7457 12563.0197 8026.3914 6224.8211 9160.3728 6170.8459 2879.1706 5206.4412 8890.7888 4191.0712 16431.3205 12273.7029 10989.7147 3351.9919 5841.8397 5428.8298 5867.5495 11829.0191 346643244 gdh Nitrogen Ammonification NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 37533.7393 23215.5543 23148.2734 65371.9039 57214.4583 32205.5983 448872.6527 35295.7658 19878.624 32665.5563 40478.7854 20047.1418 2133460.3351 39796.1696 37558.8724 33809.3765 21935.2246 21935.2246 21949.4332 44852.4546 35872.9404 100265.5597 45834.4911 52217.7648 18590.7059 20269.9232 42704.5691 40470.2935 80865.8253 40944.734 58230.5143 37667.7168 26213.4728 37024.0655 49702.641 69371.4777 359312312 alkb Organic Remediation Other Hydrocarbons NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 15321.3798 7581.1966 8155.938 13048.303 12903.4411 6088.8699 41680.2667 8118.8098 257275.6857 14316.9524 188569.6667 9565.425 36875.9592 23798.9906 7586.7834 7586.7834 9080.7157 26829.6571 21025.8717 6445.8092 10948.2633 14231.2581 9322.1362 10472.1201 14125.6366 7316.8725 271986.278 13998.3726 76492.5997 7175.4412 8167.1253 9234.9313 8396.6692 8181.2519 126708568 alkb Organic Remediation Other Hydrocarbons NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 5980.5379 3209.3261 149747.0869 9647.4655 7131.2858 6064.3362 12011.286 3970.3883 4746.1328 7116.7406 3956.7871 7238.2185 77465140 arsc Metal Homeostasis Arsenic Detoxification Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 49198.9401 18330.1323 13922.111 24602.7806 42538.0409 22029.8318 78299.8009 17940.9071 33554.2024 10873.2614 44426.8007 27738.1572 326453.1811 18451.9952 49449.3064 20940.9553 17188.2844 17188.2844 32382.6711 28827.1287 20428.53 17681.916 47481.2985 23847.7784 81921.7965 15573.8961 31571.3833 12026.8826 52203.0724 13123.1742 32262.4024 13677.5009 222448.1489 18680.4833 82978.3416 29712.9377 269791353 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 73797.0648 36934.1509 18010.8728 30014.4481 11526.2879 40851.6601 30061.6124 87402.8291 42369.1192 37909.0928 52339.1764 444104.9714 91205.9078 59736.8106 39240.2292 42765.5433 42765.5433 31133.4649 93149.9374 34582.3751 36511.8181 75402.5902 68263.086 30770.1174 34352.6494 61544.1931 109426.3809 115500.8538 51895.8037 71553.8305 24204.73 97454.0013 44029.8378 41912.4459 81081.2466 77460699 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6562.6474 35239.6625 5739.0086 20248.7188 4737.2694 3449.9162 7712.2245 6756.6958 2834.096 205081.1045 8605.0965 7413.9544 4800.0477 4800.0477 5201.3515 12011.7568 7455.3599 10501.7163 12049.1148 11679.5469 4290.03 4244.0308 10263.264 4975.5457 14355.7721 5819.8353 9422.1712 4413.9896 5212.6907 8056.4434 4710.4974 12407.1093 305383390 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 15614.2273 22798.3553 24019.4312 10914.0592 9721.6973 18735.4381 80376.9852 10491.3283 18969.6825 516585.0853 14580.6121 515285.0302 19517.27 19687.4791 14658.9773 16215.3615 16215.3615 13197.6669 23172.0415 18439.0477 18199.409 16132.3095 23068.09 13285.0004 12064.7036 21002.4408 69377.6026 32342.6423 10954.1036 28909.1447 12802.3886 14675.7443 18889.5492 30009.6738 19930.0562 298290439 tktA Carbon Cycling Carbon fixation Calvin cycle Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 29334.0911 26717.4429 39218.3861 81205.7118 218443.0225 43855.9891 153160.8269 27769.9604 15131.8792 110167.3641 75728.1526 36833.2436 804423.8184 48822.0116 71892.8726 49862.9387 87860.4921 87860.4921 25951.0302 57481.9742 40265.6465 27393.9147 58190.421 107933.2769 21722.8276 57707.1724 59638.8394 20267.1708 109203.0695 53354.9991 61036.313 21610.7933 33595.4529 32050.02 40479.403 51024.6952 121709930 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 61038.573 24220.2336 25963.1506 59464.6873 34488.4412 19736.5622 35887.0206 39126.4426 50616.7105 40964.4791 44778.04 28776.6281 1101040.6042 58059.4299 63627.5784 49424.8009 27244.8058 27244.8058 22013.2076 53015.2683 34347.6961 38776.8917 80060.7016 52848.3929 20139.6771 23734.9056 45096.5142 19804.5522 87813.1143 24414.4323 47101.2101 23009.848 25109.3974 28926.8305 18620.6043 46663.7094 383777497 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 510399.6729 136608.1997 277070.9538 99884.2616 210697.4259 2023700.6679 345643.7891 461135.1919 147006.6949 195409.8431 184010.871 308345.5524 3450548.9093 240740.7601 193781.708 393288.4666 375028.7629 375028.7629 124311.0465 334064.6443 168560.4108 403158.4248 254140.0323 339613.6719 180110.4172 163382.1661 513213.7139 291702.6552 506276.563 218052.8203 288249.7699 271681.1558 216800.9608 217603.9369 108494.8221 761652.8928 154161090 pgk Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 5112.2499 4508.6253 309157.1187 8837.6366 2500.0907 3760.3921 12546.0159 7215.4179 102003.3574 6228.3622 6073.4344 19089.139 3802.902 3802.902 6487.8556 6328.2154 11957.0756 15567.1484 2610.4846 4241.1338 6126.1176 31764.8995 14779.5364 7662.9751 12382.4578 5157.1605 3395.2207 7161.9934 7493.6343 387970482 ppx Phosphorus Polyphosphate degradation NA Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 35836.6944 6134.6632 5202.7814 10014.7332 7220.5758 47023.3347 9087.8506 17295.8131 22171.35 9852.8864 20974.8314 437983.5747 10083.2862 97780.848 80401.0596 7311.2001 7311.2001 11711.8861 27001.7286 7741.1979 46665.4821 10963.8697 16891.6704 10351.2143 55196.8304 12321.829 24851.9408 26626.662 6872.0948 23133.7341 6051.159 29531.0978 14668.2861 17064.0949 6717.549 149176730 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 5806.4867 28702.0925 5881.9898 5199.8075 3895.356 2152.3635 2022.5639 7604.6815 72054.2612 3868.8597 3690.3769 4353.5573 3281.0531 8821.3654 11308.3231 4437.763 4290.6571 6170.6654 3495.7489 3969.1585 7936.4745 2683.5935 11341.972 6581.1875 10730.4628 3014.6566 4126.5529 5318.5371 2565.3781 4726.3971 355333711 endoglucanase Carbon Cycling Carbon degradation Cellulose Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 9844.1963 26466.3999 22780.0193 6598.1732 3923.1938 10689.9463 8990.3936 7419.6048 36051.1198 6024.0388 145030.6992 41250.5495 12046.1684 14618.6644 13221.9692 13221.9692 9913.431 16397.3399 13181.3648 9592.5042 11354.1202 4805.8129 5090.2586 10946.5302 14322.9334 9154.5 42583.0688 23055.6125 38332.5962 52164.091 11189.5927 78154.4735 11564.7443 8517.7792 142852446 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 5437.6088 101602.4968 19464.7136 25855.9008 13090.2338 15878.8018 10608.0588 5722.5161 6056.0173 59584.6978 203483.7007 14018.6796 26727.3325 5801.5037 5688.0939 5688.0939 17891.3648 58482.6715 5305.6944 13232.9124 4722.9882 9466.2614 5079.3954 8351.2272 9320.2619 22334.5733 28877.459 4191.5252 11447.0452 4459.4373 3858.1639 10731.8007 4580.8228 6761.8316 351593391 pcag Organic Remediation Aromatics Other aromatics Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 4997.2343 6365.1653 5920.9277 3441.0761 3385.8104 5626.3496 5157.7564 84495.404 10588.4394 5511.3828 3389.8107 3389.8107 4513.7896 10059.928 7713.8976 8213.4824 11226.6237 7432.9446 2882.568 3350.1839 9345.5237 3202.4079 18070.0252 9648.4262 8932.6789 5683.312 5181.838 5435.2935 4142.4331 10799.1198 358636015 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 34672.6631 16234.7115 18884.7747 11124.3611 2917.4488 2551.5437 3944.9605 3644.0134 52190.3815 6022.1179 9649.0273 9649.0273 3427.8801 5444.3294 4215.5218 5356.4414 9314.9145 5057.0834 2771.1222 4010.3071 16688.8932 23434.2449 2610.1923 97654.2013 7953.5674 361053712 mmox Carbon Cycling Methane Methane oxidation Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 8569.0616 2647.1404 3274.5536 2494.055 5811.6119 7588.1266 7588.1266 4237.1713 12720.1671 5823.9033 69373.6145 7956.8566 2429.4186 6793.9907 10675.4554 30878.2199 4562.3762 7690.4528 2012.2875 85511.5185 4717.5226 5898.0061 158138913 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9162.6647 190464.0705 5288.7164 9164.5897 8395.4912 4521.0943 6379.52 12523.9787 11440.765 303899.6271 17927.5713 13857.2992 9859.8547 3602.9431 3602.9431 6642.2523 14454.641 14932.9462 53292.07 14070.3271 12456.0971 6424.3805 7235.3612 15183.4865 7449.5582 34767.0943 14073.2444 17966.1508 12607.6485 31672.6565 12628.7559 10060.4736 16633.4546 32308029 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6333.6732 65947.9853 151915.3829 8378.7456 6617.1905 9130.8007 7583.0566 13211.575 8068.6739 27619.2504 185147.3043 24963.4168 8353.9882 7269.2858 12804.3854 12804.3854 8039.2391 17801.0862 15865.775 9125.9558 17925.8828 16215.4191 11812.9828 6446.6278 9694.0777 8507.4077 23979.2584 14296.1544 15381.084 4269.3831 10716.8043 9947.008 48362.3754 6598.3445 308050504 ppx Phosphorus Polyphosphate degradation NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 4684.0682 11800.5604 24015.2338 9998.2248 4328.0291 7218.9467 4872.085 204036.5825 4977.1657 7721.27 16639.816 9982.667 9982.667 5910.817 17411.3744 5887.5199 5770.021 5231.0867 18390.0968 3748.7546 11783.4516 11935.1707 3960.6328 2581.9823 7029.8676 8256.4892 255944711 p450aro Organic Remediation Aromatics polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 25653.6202 25792.9165 6808.1485 340358671 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 334343.8537 6306.3736 13397.8013 76071.3294 24771.7464 7003.1619 117848.8234 9784.923 47317.8502 25030.4636 39051.122 5234256.0517 28983.3655 76089.8164 20252.2357 17328.0033 17328.0033 14957.5897 33492.2197 15910.6508 14863.3245 35425.0822 21837.898 14696.3974 18010.8294 27382.0329 7683.3878 34339.027 23734.256 117946.0791 6879.2133 28620.8892 43996.0101 8442.2464 25288.4749 3334811 vana Carbon Cycling Carbon degradation Vanillin/Lignin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 94638.9509 14860.7261 42900.0342 85938.741 25057.619 7209.6784 20632.1461 6214.6641 17801.5216 17106.7847 10186.5386 288013.2997 10786.9068 15507.8242 15459.5412 14239.938 14239.938 9391.9518 16298.3386 9473.737 11685.2642 62029.4631 11700.9877 43838.4413 8121.4641 27826.0553 7482.6022 130793.0871 12899.1431 20639.5069 8961.7583 15208.8053 21462.8126 7727.5914 15513.6423 9622538 bbs Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 58096.9518 34733.1386 84604.0474 10959.7975 7974.5408 39592.8998 29114.3139 129876.8993 16887.5195 17248.6705 135756.9156 10637.3649 826814.7529 13572.677 20393.2354 25983.6592 87378.619 87378.619 9576.8311 32290.1495 16647.0257 24486.7306 59814.0108 27538.6275 9695.7397 13443.4809 35869.9305 23804.1662 36083.7459 21000.9557 32467.8963 18368.8753 13050.2606 23358.1337 15667.6771 17300.7437 344338575 pgk Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 50329.6874 13961.686 64868.4191 219413.2398 66292.9156 16147.7485 72962.2375 62976.107 22291.4021 44500.0397 42671.4382 43916.9127 573020.1789 40768.9976 51125.6558 46290.3878 53712.1594 53712.1594 25256.2744 61158.419 24742.4981 37839.2534 148664.9393 69331.2289 30149.3485 22760.7384 239139.342 24477.4536 75783.1 53946.03 65732.666 20376.3816 37226.5698 30424.9359 29219.6033 59082.3206 164455808 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 88067.3642 5698.798 13875.3821 12421.8589 4635.5145 42442.8802 5572.55 8294.9096 17988.7293 20154.4495 166495.2759 11390.1361 12516.8278 17448.3306 22168.1718 22168.1718 8459.0985 30062.887 8373.8855 13818.3887 24953.3324 45708.8404 8323.3682 20223.3097 13982.4921 17929.6518 108995.415 14249.7496 24929.0661 8647.5604 12877.6885 10861.8011 8737.7779 29945.676 214037441 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 38449.8851 18345.2671 16996.799 49185.8617 60767.0745 17029.1068 24176.0877 39477.8353 19283.5594 32575.7805 41760.0062 25729.6663 726843.7512 34713.0033 85883.1973 81272.0944 28396.1969 28396.1969 34447.5353 50808.8522 27615.9965 38407.6413 58813.248 52980.2149 23316.0805 19033.7243 42376.163 38659.9671 80910.6184 35208.8571 47174.2081 21469.4734 27369.3324 31634.7987 23626.396 57418.2424 240170216 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 11335.4442 4900.7396 9458.2053 7176.2369 4884.4138 16143.2762 3917.1112 9850.74 5935.1601 6278.5461 124800.5337 4929.3611 22184.9533 6164.552 3983.5415 3983.5415 35085.1284 60437.2145 5078.776 15985.2875 9662.9816 51789.519 3802.5686 8653.2599 9686.3181 26179.6939 23962.1885 5476.4331 10147.1873 4224.8919 7386.7463 13609.074 6733.7878 7233.6259 49175459 p450aro Organic Remediation Aromatics polycyclic aromatics Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 17941.7835 9848.1785 8455.2185 11014.6817 11798.1294 12307.4952 6823.6792 14495.018 18128.9695 10028.432 397033.6825 17139.3079 15587.6644 11589.0597 18653.2119 18653.2119 12033.4192 29903.7707 16520.4417 11920.5692 29867.0555 26405.2985 8359.8698 17088.9699 23280.1626 75051.9168 50459.8302 19081.2385 19458.5066 32517.6619 14150.5916 16351.2143 10652.187 32632.0026 51891546 chrr Metal Homeostasis Chromium Detoxification Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 4512.6641 4897.9982 17013.8946 18261.5172 3575.7324 70788.4008 4211.235 3962.4232 4396.6369 2694.4696 2694.4696 3832.522 3282.9136 5952.7393 12240.3296 3739.1507 6546.5557 2534.3105 298576008 pula Carbon Cycling Carbon degradation Starch Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 8360.0729 20966.2766 143021.2967 4348.182 4363.9428 4167.0432 4324.27325 3421.1095 101060.7178 10823.3734 8620.4985 5664.3319 4705.5152 4705.5152 2939.0873 7548.648 7242.2584 4416.1562 10761.2245 4367.0965 5187.7714 19592.7109 4065.0945 19409.9624 9539.703 10590.7876 2284.4675 5972.68695 5186.6837 11024.7187 7791.4444 326414060 SoxC Sulfur Sulfur Oxidation NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 5528.8324 21909.7111 536020.7386 52143.301 6657.8018 5051.2598 6646.3752 6906.5308 7355.6359 11678.2466 4036.0026 137927.4222 5227.6934 7683.4592 247161.1793 6413.8732 6413.8732 9064.8916 12835.8438 9878.8766 4951.6378 8304.9255 4396.7111 8594.0957 5646.1928 14088.5847 11635.902 26849.9185 11323.478 14796.4916 5615.2028 9805.7633 6176.3113 3373.0502 15507.0491 163259436 catb Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 4437.6503 5896.7384 3449.6838 3514.2334 5871.5724 3671.1842 22681.0523 4729.3308 2505.9306 6788.6949 2109.392 8329.3042 4280.5163 4372.2411 3563.2077 328803693 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 4463.527 3972.9053 4639.1475 4056.5616 3347.182 3347.182 6222.3579 8301.8097 19464.3488 7396.5618 3161.9077 2160.6587 7807.966 311818420 nitrate_reductase Nitrogen N Assimilation NA Chlorella vulgaris superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Chlorella; 210979.7858 16542.4253 11780.4264 16621.9989 25065.473 20248.3284 13430.6484 18496.262 58511.2718 13737.4119 399731.8827 24154.6638 25750.093 28866.0732 47540.1893 47540.1893 34385.0086 33141.1784 21592.614 22095.5089 64889.235 33441.4045 22770.1863 14856.0423 27467.4482 16073.4289 57303.366 32262.0056 34917.6587 14326.5823 17794.169 24979.6621 17381.7617 66829.5428 3560021 exoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7164.0037 13682.9441 6277.0837 24183.6131 11194.4089 5285.6186 5507.6881 6041.7363 15596.0542 11422.29755 10106.7663 100003.51675 13724.4007 12641.1123 9505.1844 9505.1844 9934.6618 20204.00005 12831.0771 9024.87525 10052.4513 5187.5114 6226.64235 9536.7838 7986.3882 15132.20065 10507.25155 14827.01495 5915.6965 9932.0705 5805.8425 9345.80835 78358312 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 6127.745 40908.0701 5788.8537 3864.969 12793.1017 12037.3257 17869.482 24520.9098 582843.4622 4743.9346 4981.3525 6811.3759 6143.7324 6143.7324 93780.3641 12986.7833 7042.1927 4896.9593 2644.0326 8963.5184 2976.8277 8628.6622 4679.8444 10843.8836 2716.1619 6658.1275 6363.1868 2876.2278 8832.0615 83632559 chitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 4940.26125 6777.6324 11283.7841 7119.0543 171478.8052 3535.8889 6247.35965 6711.5192 4651.1712 5900.688 6252.65865 5267.88445 2757.58975 2757.58975 3290.5866 7065.97755 7423.18265 7044.0728 21394.3799 9005.1389 3143.98165 3474.54085 7891.00785 4138.4841 12732.6352 7656.9275 8281.90945 4184.625 3826.43245 3853.4955 5441.4966 10542.8676 346644289 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 567542.1615 163672.2725 400004.2158 226959.2624 827433.9584 1803082.3852 427879.1075 505247.9926 211168.5629 425854.5484 356668.2217 386835.5573 6455926.9139 361282.8335 428574.072 1048601.4377 553113.7422 553113.7422 236751.4547 474332.6278 277816.9036 609163.5619 640922.108 298630.1725 188693.9952 449296.1035 444997.0947 256829.0263 609744.8176 582637.8879 437610.3655 180819.7981 327984.2504 302480.1711 230199.5131 561305.8618 351779783 alginase Carbon Cycling Carbon degradation Alginate Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 14930.3276 6132.0726 6791.9151 4415.7346 3947.7249 9438.4464 9796.362 5443.8358 149529.7494 12039.325 6707.8348 4857.9277 3097.7699 3097.7699 6790.76 11801.8426 7567.1661 10435.4416 14819.3043 12553.2754 4440.5942 5653.0802 13081.677 4005.4931 18430.5145 10408.1806 11262.0404 3835.8409 4106.2289 5804.2431 3336.0884 7686.0708 290511101 cysJ Sulfur Reduction NA Klebsiella sp. 1_1_55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 247547.1571 17890.8247 29246.3504 13212.1802 7265.3884 13813.4554 75180.7803 33443.6457 18885.3782 24185.7476 16866.6631 595236.8338 29134.1828 69781.2048 13766.2737 15520.9057 15520.9057 12846.8398 35498.8956 19634.9932 23839.0333 81110.6286 34267.5847 25393.0836 31609.0845 36124.5077 25982.4701 67187.0501 30570.8731 31127.576 17995.1853 32607.1863 28395.7864 35118.532 31599.7648 251790585 arylest Organic Remediation Aromatics Other aromatics Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 68464.6156 11975.8427 67588.4157 37139.5634 184646.8418 38750.3395 37321.648 54893.4594 40454.381 39405.5882 207752.664 31130.7114 1069646.6229 37736.416 191833.1912 38196.0869 41793.5395 41793.5395 40282.3346 68161.4221 52657.1157 27634.6149 35973.4608 50271.0207 14825.7791 35730.4181 101126.2317 26714.0395 109050.5434 75663.6613 87140.8683 38218.7493 34136.4099 49841.7244 121020.849 32670.8619 285878243 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5367.0262 5098.2708 7624.2898 4328.2817 80997.8226 4635.9516 9894.5614 7677.7371 5086.9592 5431.4329 3403.222 6603.3315 14071.0258 5667.3959 6161.8199 2557.7448 3622.3488 2406.6703 73534317 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 17274.6042 20388.1259 17183.3212 6348.7771 11556.8489 7752.3357 5224.5993 102901.824 13026.6295 49024.7995 279399.7437 15693.3782 13148.5582 8039.4666 7405.8722 7405.8722 10181.3689 18707.6739 15116.353 48079.3909 16667.2631 15435.2464 22196.5625 17896.4599 16895.5458 27919.8291 37149.4241 114303.3909 21281.9407 10888.7528 11393.4273 21952.5717 13327.7532 14432.607 120607444 arsc Metal Homeostasis Arsenic Detoxification Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 37851.9193 18728.8786 32554.878 9593.6096 10798.8313 13859.8221 9228.6641 24452.9742 19052.1813 10839.6553 485163.7404 17343.802 60206.2716 35607.3166 13296.0867 13296.0867 10716.221 28889.1672 25424.185 11988.5615 34241.1543 96750.3939 17907.0132 11238.2613 20244.101 10558.377 38261.6557 16939.7945 27913.0136 7809.7174 17068.5195 57052.2761 9393.9162 26075.0503 377539786 napa Nitrogen Dissimilatory N reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 7775.7185 3792.4891 2944.1683 8704.3981 6575.626 6999.9459 17807.2444 207410.5925 37335.1677 6138.958 31454.2225 10247.2347 10247.2347 7534.105 25473.4568 6676.9876 13518.4807 7157.1957 35928.6007 2730.4254 7609.6321 12110.8485 3583.2742 11928.6155 6570.3624 15936.7731 3343.5956 10894.609 9430.6814 3837.2067 374310956 terc Metal Homeostasis Tellurium Detoxification Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 48030.8448 55452.0281 22030.6718 72110.1509 137472.3214 53907.8058 34974.4835 37131.385 36089.7449 40102.9534 52348.355 28975.3825 974653.4889 72055.3855 54258.7048 88589.4916 199900.4495 199900.4495 32543.9178 53990.0305 36813.042 99459.8147 60031.0953 45341.2861 22509.3229 31364.8383 64731.6966 51287.1584 107494.6011 39728.892 55331.1635 21935.7472 23031.8166 35117.5392 41318.4663 85986.3955 112462135 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8269.1177 7165.2761 4337.3629 3629.4518 2861.0732 5810.5735 2536.4592 110226.485 5854.7641 4672.8185 4389.7817 2559.8355 2559.8355 3772.5123 12820.0101 5710.7552 6826.988 8180.253 8982.7369 4029.33 3757.1874 9151.6871 3121.7703 15743.5969 3744.6531 13361.4796 4799.4487 4460.1351 6469.1308 2353.0772 9586.731 169616370 glucoamylase Carbon Cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6989.9628 7491.7939 5151.029 2664.3157 2300.2803 5839.3783 5874.6205 12785.8407 4588.0017 5149.2504 5001.8465 3440.6394 12450.1111 5631.2015 6514.466 4665.5428 2885.0271 4769.264 6848.6749 17064.18 5401.4619 8741.1901 5153.1867 6135.4188 4664.7631 3499.2569 283484359 rgh Carbon Cycling Carbon degradation Pectin Marssonina brunnea f. sp. 'multigermtubi' superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 42284.9885 15268.8261 19128.9685 30948.1804 58366.871 24024.8328 27589.1896 15527.9736 36031.0418 44428.1329 23720.3877 430434.0365 65578.1472 31496.7015 24169.7447 21726.0926 21726.0926 28850.2322 43412.1371 28681.3648 40255.7824 75334.7184 29340.3835 15638.7815 41158.6856 33108.8406 30253.9851 81947.6813 28671.7264 34717.764 48195.9131 51919.6718 44982.1949 25007.9018 61523.647 392450360 terc Metal Homeostasis Tellurium Detoxification Pelosinus fermentans A11 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 15939.2697 144575.5615 11521.3225 33895.4303 15240.63 3834.5447 5671.5069 6224.4598 2789.8098 95068.3843 4959.4951 6154.745 4997.6679 3876.9746 3876.9746 2701.4131 7531.9454 5414.3824 7415.384 5083.9612 6222.1031 3019.975 4776.422 9441.9161 2699.7594 20957.0825 5657.7902 7589.8648 1897.65 2694.037 3690.369 2297.791 5800.9979 7239153 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 4404.9416 4114.8202 7281.5287 7513.3457 10717.425 3366.6531 4439.6693 146874.8998 8578.9879 6538.4042 5213.8962 5213.8962 3240.2793 6795.4126 7369.669 16408.9869 35075.1321 6313.022 6901.2772 6404.4738 11343.1363 9599.6796 14521.9224 17321.4905 6359.8791 4010.7327 5715.5205 109645692 trzn Organic Remediation Herbicides related compound NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5466.3508 5237.705 2092.3778 3973.4526 2510.9484 5525.3771 5466.2213 73044.7027 3743.654 4105.5493 15831.0525 15831.0525 2520.8833 7420.1712 3860.2789 9889.8119 9555.4184 3657.8277 2337.6332 9113.3279 5689.3514 9745.8275 1834.5871 2443.4225 3641.7327 4028.0525 9461.4919 3128310 arsc Metal Homeostasis Arsenic Detoxification Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 4775.5618 4810.5434 3731.416 5651.4962 4527.049 28537.767 5581.4869 4805.9488 19841.1671 8267.7134 7849.2599 7849.2599 4627.2573 12854.6506 8709.8178 5837.69 74102.8069 10499.7417 4963.1845 5644.3313 7482.3269 5512.2396 12434.9611 18161.1715 8544.5427 5687.0058 7226.524 12471.3551 5389.7134 6839.8852 184204571 xyla Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 123246.2719 27934.9988 37230.8624 306003.3203 44534.8594 18152.796 50218.8518 50038.7397 35967.2035 59835.6458 48017.4853 51476.9381 1423818.9783 64261.8969 62827.7454 72306.362 42432.1018 42432.1018 36276.5912 66045.6603 43286.9389 57618.2223 63361.3822 82604.411 31162.2214 52502.8662 60207.4755 30480.5881 103014.974 44236.5952 103959.3631 34837.6274 34015.2656 38760.6456 26680.1724 66162.5543 325261101 b_lactamase Virulence Antibiotic resistance Degradation Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 19494.8761 10602.9503 16165.5747 15753.6848 6231.2364 16165.7832 250531.4934 9397.9787 21256.0533 12162.4807 12838.241 436658.3072 31841.2956 18425.2247 19406.1451 11815.1749 11815.1749 9191.0852 25046.8018 15310.6774 16955.9406 16435.043 28066.9571 6754.8769 9946.3536 22944.3948 11003.111 36869.3358 11810.9229 21968.0734 9516.9781 9174.6367 11332.7752 6089.2021 20831.7209 226726373 soxY Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 5268.4999 9341.925 95585.3789 11581.15 10518.2926 8336.6231 6687.8886 23485.0778 5537.8742 1941.1248 5118.1151 7803.4526 4573.9996 218355607 ppk Phosphorus Polyphosphate synthesis NA Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6064.737 6663.6057 24319.8767 73713.2803 9072.311 7155.1031 1943.0674 19302.0546 14679.0142 6432.8301 80113.7111 7705.3889 7143.7545 7861.5118 6784.0285 6784.0285 6881.0732 7805.7417 9179.7033 5569.2472 5079.3013 2794.6362 8805.8921 11579.3561 6710.4307 337001.9569 20016.914 8356.6057 3955.6252 6565.628 20926.8617 2411.0752 349780042 mer Metal Homeostasis Mercury Detoxification Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 6242.7815 11826.651 14922.691 7084.1568 11101.9125 10235.1206 4778.5257 8078.3378 50484.128 9485.7218 329608.0541 13984.4604 8116.3772 4719.7077 6721.5413 6721.5413 5078.3204 62415.3094 9432.5648 5466.1375 30491.7415 11952.3274 4607.8408 5446.4649 10107.0569 13608.2631 49874.2446 8977.1446 12412.5406 10146.8773 8206.0835 12099.658 11128.8773 28037.924 154246629 pcag Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 167992.7627 43850.5585 299250.6698 74093.6069 78053.8192 58455.6102 193546.3171 461326.4764 159713.8831 94871.9921 153725.7767 243730.2158 2923291.976 344232.7285 302414.2373 1141606.4986 177694.698 177694.698 59507.0182 143767.9241 77330.2069 512626.8135 215190.4015 112650.9364 93983.2989 62271.2006 107061.0587 111211.6829 229179.7205 87301.8854 224105.8712 72830.4658 107127.8399 121229.5172 65312.2461 136104.4259 336013302 rgl Carbon Cycling Carbon degradation Pectin Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 13828.4087 98128.099 22188.9859 21085.1171 13340.5602 16411.0724 21427.3138 7683.5213 13021.1785 17958.6134 48776.567 414537.0339 24076.8738 17902.5448 65973.8672 20389.9588 20389.9588 446499.9627 21989.5184 17926.2556 36609.881 15297.608 18663.5602 9352.8615 15733.5749 38418.0487 8324.9023 56435.2536 43396.5096 31534.8571 9340.4019 10571.2574 10449.8873 5687.2796 19027.7623 330688052 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 15479.8065 6273.3102 7734.2257 29772.0584 5279.7039 7334.1347 15548.1487 5730.0249 10477.5915 38695.7533 10457.7008 185455.1094 17128.8588 14527.3809 14441.2512 14480.7765 14480.7765 9483.779 23068.79 11534.6414 13504.9899 15616.3329 9987.5219 6953.3801 8933.3792 17396.6961 8234.6905 35449.7229 13975.867 31072.6116 6123.4954 10643.3497 12284.3738 8716.6938 19717.1236 229380361 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 4322.5879 3069.5804 2801.3128 75757.6856 7055.0622 3544.9429 8597.3767 9685.0832 5307.1601 6483.3551 5136.939 3054.6971 5920.8093 2531.9481 9924.5279 4806.269 7359.5925 4065.4041 4864.426 3211.0548 4039.0777 6718.852 256560843 ara Carbon Cycling Carbon degradation Hemicellulose Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 23218.8697 5559.0545 7079.0926 19054.8866 4563.8791 2774.8548 19654.4855 4498.4298 4287.6534 8339.202 6335.3546 93284.3618 12300.5611 16831.5937 17428.0021 25284.6822 25284.6822 5542.5532 14214.3859 5508.7289 13082.5564 28923.6833 7297.2576 6479.659 6731.7652 13585.2495 16752.1937 22535.1955 9245.5097 14841.3507 4304.4278 12710.8592 31887.3701 15079.511 7896.3809 313105036 dsra Sulfur sulfite reduction NA uncultured prokaryote 47176.3839 29042.8683 23132.2159 16084.7279 8278.766 18868.0069 20288.1199 12138.9842 116344.5626 38769.4255 32075.246 499645.0122 42146.7695 38329.7972 29341.9697 21706.1021 21706.1021 36917.1183 43355.7509 22724.4086 23133.5861 40684.4887 26779.5026 22242.8474 49742.9178 35076.0185 29962.9535 197382.022 53258.2106 40230.195 13440.7928 30397.3181 30165.4801 18992.0124 61484.3209 103484203 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4910.5394 9635.8036 26470.4213 6450.3666 6765.0636 46462.75 43216.2128 9846.2544 18391.8951 9724.2245 139469.2742 14295.7188 11619.3603 35784.6615 17410.7851 17410.7851 16517.294 19786.5702 12196.4858 4720.7343 6623.1898 4537.4843 6327.8036 14497.6549 6957.1269 29476.8019 15990.4974 31574.3257 10244.5055 9308.5912 17359.0849 50227.5883 6222.307 72117504 mer Metal Homeostasis Mercury Detoxification Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 64950.518 69788.8273 42239.9722 10421.7535 16944.8584 4688.3813 4381.1228 116711.5655 9165.7974 10846.7702 17256.8785 21428.3372 385495.0468 8406.8497 18868.2441 17099.3673 26191.2099 26191.2099 9548.5421 56182.059 19285.6941 61453.1721 70570.5796 13974.7419 17932.0473 16408.8887 522820.7403 13931.9422 164786.8081 55256.2363 20829.8619 13503.9763 159930.9753 51048.7849 29807.9422 34530.168 154245856 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 40243.0318 161240.8252 23675.1748 12496.0801 66914.6456 12924.2441 74439.1765 28072.2596 76101.4136 31216.5168 46477.0623 53585.5599 1193067.2113 36497.8103 32249.6933 62984.7072 41939.7408 41939.7408 38718.1388 71904.2378 33852.018 45506.1442 36867.6568 57229.7452 26645.7913 24640.96 42955.8911 34879.4105 85810.293 39703.2698 49851.6747 20030.9153 48551.7587 55201.7622 43175.3866 22727.9146 89275899 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5045.5553 13627.1932 3650.0303 3130.7636 325952302 amyA Carbon Cycling Carbon degradation Starch Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 7203.0434 17365.5973 6352.2757 8792.5229 14937.7973 7059.5771 5863.2321 15386.0848 23899.0308 24188.615 201302.7148 8638.0194 6945.4121 14348.8817 9881.874 9881.874 5494.6353 22308.9876 7709.5877 4997.4504 53039.1413 8383.5665 8316.7096 8492.5374 63939.3777 10141.1559 65008.194 11537.5149 18100.5528 8097.1688 6241.7948 25561.8269 7172.7353 19542.206 346421702 cdo Organic Remediation Aromatics Other aromatics Pseudomonas sp. 19-rlim superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6879.1111 24951.3257 4128.4281 8838.3883 5979.1264 14705.9512 20730.1038 2936.2959 4613.087 20074.9052 12071.0866 122261.9487 8291.584 10967.6786 10933.6699 9725.2728 9725.2728 3428.6922 30801.7804 9697.0757 19917.8474 18356.3374 21428.8047 6236.113 5325.3173 10230.3573 9520.0579 57199.8596 13694.7783 10807.9774 8966.6272 8164.8629 9863.3852 5770.6797 43191.3389 121227812 phn Organic Remediation Herbicides related compound NA Burkholderia mallei SAVP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia mallei; 40276.3439 701264.9454 7267.9443 5907.589 26965.0325 241030.1953 9657.1485 15232.7856 12602.4446 7331.5215 1813324.9868 81676.3771 8606.8679 6507.9236 11618.1921 11618.1921 13146.8911 26962.7314 25229.9511 23445.2387 23098.8405 21849.7254 29478.0767 73808.8231 58746.7234 105437.0148 164695.0243 21366.0992 21231.0951 10926.0721 13606.3674 14723.2348 8726.6881 19812.6462 373466200 amyA Carbon Cycling Carbon degradation Starch Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 33119.3201 244848.8953 15765.0896 26884.4658 19525.6507 20571.5136 29568.9423 46553.0269 26852.4977 92267.3198 46454.6111 323764.8617 34351.4197 48084.871 32962.1524 26344.5236 26344.5236 21141.2432 50281.2348 17277.978 18583.2373 33989.2339 67370.2574 10165.6067 67943.6767 57133.2335 23456.5121 47342.5752 32845.689 34204.6407 11970.1494 37552.4021 33079.6755 26560.0095 20555.7769 270334301 rgl Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 23613.0865 17000.754 24859.3267 41345.0156 29728.176 32386.6511 24104.5906 17880.1209 13356.4064 23702.4128 22221.4289 11962.2142 989952.5993 29690.2785 28915.2617 38904.7162 12315.0855 12315.0855 22338.1122 29226.2264 23853.1263 29085.6007 31423.8248 31673.4721 13476.5959 15757.0301 37537.7455 12345.1828 48507.3305 26593.7931 37875.3569 11474.562 16278.4014 23136.7097 15762.4995 39978.7033 94471121 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7542.7007 1806.5407 18363.4499 260905451 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 21456.8918 27047.2111 324766.0228 260278.31 433772.5904 16133.4562 202311.5758 7493.9743 36820.7298 57841.1007 28801.2941 487866.2339 77105.025 124902.6368 67382.5871 35143.7314 35143.7314 68983.1605 123561.7075 143249.6761 11002.1734 18129.6847 13806.5823 13267.6079 77993.8074 293833.9516 31876.2777 292069.4161 170895.9002 276199.2257 103208.7674 78783.8402 121681.0391 40302.136 9597.661 383822960 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 171971.2607 92190.1488 230376.9874 65583.232 141620.716 71303.8134 82302.0199 134588.0923 96705.3675 110465.4045 160436.1797 101731.4238 4668869.3796 93036.4281 178409.9998 122687.1155 144779.5715 144779.5715 64670.1352 186733.1204 79760.1591 203552.1446 105900.1195 93607.8455 52772.0779 69892.8452 131036.8347 107261.8354 188563.7431 130944.7846 132371.3702 66371.9741 70278.3617 179865.0046 87235.6299 149902.4249 27314546 merb Metal Homeostasis Mercury Detoxification Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 27107.4932 10184.747 15486.8197 23713.367 4855.3545 30436.854 9719.9494 65093.1314 9881.0372 25838.4078 36696.5136 281093.7969 19844.1271 25621.6108 33713.8083 16283.1715 16283.1715 9370.8928 81157.8668 21027.2113 74200.2418 48097.9014 16307.4236 13725.9451 9109.039 29812.313 12071.1209 40391.0588 54874.078 27796.3606 7366.9437 26695.8032 16129.8302 12083.2713 14793.7932 99030569 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 318565.3661 107907.6804 1619055.0126 22048.0231 12108.8 6190.3157 379529.4817 8477.4354 47713.1495 22057.3806 59549.5653 1824873.5183 19460.5759 94239.0079 37629.5274 78113.5204 78113.5204 50825.4759 65450.7946 21006.1251 145960.4824 101662.9131 44056.7098 125069.0152 77955.0544 1186785.1537 162286.3896 63224.4211 285739.0771 35343.8044 34419.6966 32371.013 55134.1401 441141.3245 1181974.2405 359426031 catb Organic Remediation Aromatics BTEX and related aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 10543.4343 18362.3739 18529.8058 27345.7444 5762.6714 55815.2587 5605.1348 2165.4669 15835.4062 19731.7053 20055.3128 740512.8195 13343.9887 19043.4833 26473.5708 26524.7127 26524.7127 23221.5523 28155.0622 10214.1379 16455.3364 19291.4487 20146.9267 11169.5091 11705.1395 167053.1299 16172.9077 161848.5256 24116.2532 19490.2642 3996.1949 26055.8822 17650.8494 6567.3538 13096.0344 169638053 glucoamylase Carbon Cycling Carbon degradation Starch Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 9353.0814 6848.444 5214.674 5622.9782 5114.4385 5631.578 4383.3842 130866.8917 7225.9729 8436.5311 4800.583 4800.583 5405.4961 12655.5024 7667.6764 8768.8606 6891.7045 4651.7806 4130.6109 20284.8727 11719.8901 5490.7709 14740.8755 8802.3906 14951.9133 3572.2589 6095.0745 7127.6359 14603.8208 8937.1095 330958934 cmci Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 13474.5679 8762.3972 17005.3484 14461.7225 8959.6541 6740.6919 6949.8529 10329.9451 12999.1776 5181.5588 266415.5772 35065.3275 12712.4173 9902.4681 6307.207 6307.207 7821.4296 20688.1816 14962.1546 12509.223 32465.519 15734.0807 37216.5657 4769.3143 16247.4423 9916.1077 38212.1364 12999.0464 15292.5611 7469.9969 11123.4397 13078.0163 23879.5532 22076.4373 288318706 cueo Metal Homeostasis Copper Detoxification Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5105.7165 7179.7853 9460.4934 2174.3098 2986.0055 2014.3735 3475.307 8214.8081 2558.4257 12290.5356 24394.9606 24394.9606 4462.0647 9595.5316 6739.7477 5904.6421 82916.088 14023.9061 2869.685 3065.5469 7640.3872 12697.3209 10369.3989 5761.2506 62417.1062 4427.1558 6078.4123 7873.1784 10899.654 6477.7662 338233265 SoxC Sulfur Sulfur Oxidation NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 78473.892 119257.4146 51740.4722 205498.1051 33005.694 92383.9282 694002.1582 70137.3708 83843.3052 49825.2288 61165.5205 629009.7318 380721.3757 72970.1212 73239.6131 71072.9555 71072.9555 35527.7999 122105.1289 65053.7971 55679.2306 137402.9714 53674.1368 37592.5341 61921.3241 163422.1822 109172.2108 258451.5939 67936.4193 524618.24 48413.6598 51960.2608 78721.4578 159504.1017 1558602.8639 301109691 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 10390.6631 8455.26 8589.0381 116157.87655 7653.73515 7164.3453 6683.89455 8040.4203 8735.1404 9097.1705 219704.2113 40592.9138 9460.1171 10102.8547 4897.1857 4897.1857 7304.4151 16394.6743 12638.8034 9012.6899 17495.6565 18338.8471 6759.9229 7530.1696 14125.4688 9290.0018 21137.7721 11318.4581 15060.099 5498.9518 9788.3427 6702.66255 34032.3057 20315.6748 330993701 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 4896.8877 6079.4842 15696.4789 7561.3112 2845.0578 4784.9063 79597.0933 3431.2426 3343.4128 6763.3972 4145.69 4145.69 7975.9247 4242.5347 5747.5462 2290.787 4834.2258 6942.0552 7844.0946 4166.3465 5667.0372 3039.8197 3810.1983 2102.7325 347820861 pcpe Organic Remediation Herbicides related compound NA Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 67168.324 52782.7224 72798.1515 62546.1426 5227.2684 16635.3857 34613.5354 29100.0304 28567.5349 31867.6016 60752.6565 427543.4446 23647.4592 20748.7573 24172.1388 37185.1465 37185.1465 54732.9426 55401.3946 25974.304 53135.1724 230853.9405 26105.119 16359.4429 47133.5692 45162.2169 54142.6252 93446.202 31643.8634 46388.5599 25639.161 39437.0918 31628.5611 23593.9484 42404.642 119537041 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 13212.182 7835.1867 5782.039 5696.5917 7502.0751 21212.8117 13897.458 111150.6272 11775.4593 28097.9227 8299.0498 3727.9123 3727.9123 9592.584 16537.5859 12856.104 28246.0068 18817.0424 12820.7368 5400.1004 10551.6592 14509.5632 5813.9423 49086.7946 8113.7633 18310.9238 4457.9796 5154.3807 16359.1867 11568.3297 13158.113 4468699 terc Metal Homeostasis Tellurium Detoxification Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 24298.2028 6989.3938 22110.9215 34741.5284 9424.8795 6804.3305 100833.5129 7865.7487 8824.3576 14026.8941 8536.7262 258699.7497 10390.2343 30521.3419 13322.945 18912.0304 18912.0304 19040.579 22141.2929 52683.9977 21639.118 23462.6807 22153.8205 10446.124 7791.7824 23908.3681 9202.1027 35108.286 27198.0927 21965.867 12078.9433 15051.2061 122774.1951 10766.6338 31115.5403 326411479 urec Nitrogen Ammonification NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 17679.7772 12678.9535 7547.734 3135.8685 5415.2711 5112.0498 9895.0475 4386.9916 8200.5265 4644.4338 4644.4338 4893.7711 12789.9584 144675.0781 7144.4863 2658.3439 4443.9922 150029838 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 5943.2958 104485.0405 102561.9817 4024.9256 6142.9833 4169.2114 2449.7615 3800.5627 8502.8254 6366.7763 4650.7746 3440.5169 3440.5169 38185.3246 53116.4664 9730.0308 7595.3642 13122.1787 7087.7512 8141.1988 8983.5719 14460.3668 8791.3982 20186.8069 9427.7337 17094.9564 11474.2097 7015.778 5962.9435 4718.0714 8081.0288 53804090 cellobiase Carbon Cycling Carbon degradation Cellulose Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 5784.7431 4362.1009 6888.3416 84738.9074 3802.5768 4666.0509 2975.8813 2975.8813 2714.482 8423.0194 5310.1897 5569.7015 25536.0674 6872.1629 3344.8626 2652.0229 6163.7506 2116.9041 11775.303 5474.9954 7411.3208 2717.535 5249.2832 3379.1923 3153.5969 8333.0641 299766958 ara Carbon Cycling Carbon degradation Hemicellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 49950.52 31289.5659 37701.4008 47426.9881 61785.0629 30187.0917 36013.3377 29719.0333 27069.6246 39624.0868 40600.8637 22417.408 1077930.6884 51200.3152 60827.9831 50597.5484 83649.4877 83649.4877 32122.323 62571.1147 44942.0146 41134.2026 62781.4134 78481.6994 25481.7283 23940.982 58467.6021 19927.3107 81746.7825 46944.3537 65723.6434 22672.9751 27012.8434 32254.6376 26973.4599 127386.0133 384467869 SoxC Sulfur Sulfur Oxidation NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 3756.451 14883.7973 7335.4262 3945.9809 2744.3443 4603.6124 5584.9246 56643.6826 5874.6007 3200.3204 2883.0667 6006.2075 5195.7069 4981.1573 5535.0368 2116.2869 2266.8269 8064.5421 2157.8303 8264.9735 6574.0093 6334.0776 3197.8446 3981.3419 2935.9928 2647.1979 5912.8604 378763416 mannanase Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 8211.117 6300.6288 6239.3426 11234.0688 8422.2419 4771.057 3171.8625 7158.4178 8580.9578 4256.2465 132007.9217 9476.866 6549.6298 4181.042 4062.5051 4062.5051 6298.555 17323.5385 9494.3493 8462.5296 12171.0979 14032.8295 4347.5977 5215.8405 11216.9024 5808.412 16899.0999 5430.5546 12249.8218 4882.5879 5939.7726 7547.2588 5566.0299 12269.0004 365826933 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 12696.8227 189563.0835 7554.833 38694.4565 31196.1265 8161.0307 12541.0223 2831.3717 25489.9444 11337.5607 21307.7711 245273.7414 14105.9391 21331.4096 21054.0481 22086.2649 22086.2649 8876.5448 15838.0368 9892.4414 12480.4375 33377.1709 6639.9167 8997.9289 15818.7098 16156.924 4483.2976 25127.2013 18077.2479 17361.2874 15321.1972 28895.0667 18209.2849 3985.3628 55883.6511 291584271 SoxB Sulfur Sulfur Oxidation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 6797.0765 6324.2069 3404.7388 2516.4964 6459.4432 4542.1702 79874.2474 4167.6789 5790.9277 5462.3823 7938.3493 8216.6707 3763.3037 4626.0456 4848.2767 2094.1289 2843.6458 6739.1766 2245.8264 9468.2715 7502.5433 9003.0646 5811.9555 3613.8461 4730.894 2786.9413 8956.2834 118051290 vana Carbon Cycling Carbon degradation Vanillin/Lignin Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7155.9496 7598.1054 37451.2366 5175.2759 333441098 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11630.0514 15366.1159 4407.3264 11174.7314 4213.9518 6738.8318 4761.3368 4580.6342 4580.6342 7347.1729 5812.9638 4996.7269 4324.805 3791.9673 6550.2489 3499.3077 10746.2107 9522.7394 6471.7933 3124.4358 7118.3747 3978.6425 4510.7323 147676775 arsm Metal Homeostasis Arsenic Detoxification Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 27106.4549 496272.9304 7518.5261 20541.5177 5142.4437 18137.0868 12574.1094 19155.6861 11532.8967 39584.9786 25293.6925 254120.7813 21746.6982 27252.1559 27514.5526 68625.5456 68625.5456 10808.9344 34330.6399 17613.4001 28641.5454 86215.6995 10370.1598 15572.7816 22371.5885 32426.3648 26006.235 62678.3825 35994.1737 40290.9656 19240.1119 22926.5291 34606.506 15365.9114 29620.2387 383766415 glucoamylase Carbon Cycling Carbon degradation Starch Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 9332.0377 276392.7929 5595.1605 7369.5466 10639.9318 6085.7655 7850.7574 6337.2784 10697.1052 130040.9064 16528.102 11383.3352 12694.043 20188.4635 20188.4635 7399.5093 19678.0368 7846.0324 5942.2292 8128.0178 3752.4537 4995.7479 11503.5999 8529.8657 6446.7689 12552.9564 16440.5579 11170.0852 2747.4663 12556.6712 16566.3015 2967.508 4438.3324 169762163 sdsa Organic Remediation Others NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8050.2136 13709.3684 14922.5322 4536.3934 11636.3856 7009.1631 3303.6749 8088.3006 9946.3303 6231.0827 727986.4455 9765.262 18324.5129 8113.441 83789.1601 83789.1601 7770.2084 20276.2609 8026.7844 370855.5856 30141.2437 11683.9544 7637.9231 11506.4428 37034.0718 9325.4161 24274.2825 17066.6526 17801.5451 65180.4191 9194.0172 51604.8763 10989.9796 17580.4769 375053130 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6799.2467 8235.6179 3259.3477 4101.5386 12072.1074 3929.219 92249.7485 7056.784 2245.1192 2245.1192 5994.2966 9203.1641 6476.6429 5290.9773 6109.9918 4584.2067 3061.6509 6414.6884 5413.1521 31250.2965 2709.5961 3679.8637 4686.4266 3206.675 88790371 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 24426.132 16053.441 12059.0856 13719.2172 12688.7216 12791.6904 11564.3695 25938.1416 24041.083 16451.5307 434804.4883 22801.0154 32954.7494 28174.0473 16645.3522 16645.3522 15604.6005 38660.0522 13966.7505 98970.3621 29921.6426 60928.7641 14922.0021 14765.923 17656.1867 10240.6363 56244.502 8448.7209 26815.3107 16922.6756 16736.3445 27123.6046 9602.0299 19264.085 119479235 nitrate_reductase Nitrogen N Assimilation NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 18265.4682 278826.9169 10446.1499 9734.0892 5354.0537 5895.42925 14183.4765 13701.4585 16888.6255 6490.4216 297998.2796 8503.3969 12255.0241 10703.8649 7254.382 7254.382 5600.9317 10491.78815 17043.3848 10877.6905 10778.0359 4413.6939 6764.6932 14860.3205 12409.2744 8923.10385 12309.8802 9310.9385 5812.0611 9955.2737 343923445 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 26973.7761 9386.4886 9833.736 11645.3819 376365.2281 31420.7768 11767.5903 13772.3141 20144.0946 10872.5275 321138.5897 18109.6687 15341.7018 24688.1418 14043.4186 14043.4186 9596.4724 27934.0573 15790.57 16728.6536 64026.5515 19200.4168 9612.8812 10158.4172 22576.8557 21986.7557 119737.9986 16515.3481 20271.3211 10641.8177 12494.3522 13826.9558 10946.1465 15379.6879 169793352 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 38842.0917 22012.4442 37941.7651 59125.6223 30282.5494 37401.2936 20777.66 61771.4066 34491.8204 33433.2874 592399.314 57539.1192 1146717.677 59419.256 141923.3217 170093.5857 116959.9004 116959.9004 25129.6444 60671.9077 94040.5502 41831.1593 48307.8218 35161.4364 48035.2484 49025.4003 46073.1674 228060.7276 130218.9635 34679.5589 70789.1113 122712.2067 49018.9928 58599.9227 22005.9938 56686.4024 387967845 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7601.3104 12024.6411 12427.9364 11593.4393 6836.2857 6954.325 10295.4285 85433.842 9406.1534 8940.335 4463.0292 5941.1917 5941.1917 3282.1206 10506.9095 5353.5163 9528.0549 9030.9177 8489.1174 11118.2039 7381.6592 4957.0362 32624.6792 3775.7063 6605.2866 10577.1385 30461.5822 8600.2674 5974.4946 19238.8661 296136583 arylest Organic Remediation Aromatics Other aromatics Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 21821.6473 20983.0306 11194.7741 5764.08255 40877.7002 16305.0522 14243.1408 9745.4369 12156.0164 232096.48865 20269.4236 14580.3841 13818.17715 11388.7963 11388.7963 6990.8097 27708.9459 20951.746 10776.9591 19567.60755 9379.84215 7353.9796 10033.0115 16610.62405 11923.3989 32943.02755 15421.64135 32577.3594 7479.8616 10095.17765 17039.9704 11383.10755 22299139 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 40397.5204 21629.0718 22928.527 16858.5855 9276.7115 21790.1895 22458.9787 39836.3577 53078.7874 45625.4332 91915.3381 343755.5471 49298.6678 115102.2011 100213.095 60914.5664 60914.5664 41493.9825 52038.7758 21821.8748 30984.3383 87344.5511 52606.6197 23410.7784 53401.0364 31095.1308 39997.9337 67756.1046 34721.4 41486.5089 29602.5468 20272.2246 36859.928 28826.5395 78800.0186 398897015 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 49146.8482 11548.0375 12304.882 15080.9979 11304.9413 6349.0889 56349.6307 38599.3366 7002.526 22821.8374 35372.2867 611934.2187 27122.2459 40794.0844 38324.8779 18912.5732 18912.5732 11340.0107 33867.8674 36479.6838 27344.1234 358311.6368 21241.2846 13125.0491 31681.3592 32551.1647 13551.0393 103402.6073 50808.6514 40160.2586 29204.2682 22364.6611 28446.2974 14593.0736 44669.0393 256558203 xyla Carbon Cycling Carbon degradation Hemicellulose Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 65194.972 23036.2787 55220.7907 56631.1786 30675.2079 29592.3256 18285.2513 25467.542 14305.1403 19351.3253 64525.7741 23455.875 733431.7972 38781.4141 43549.2797 41557.288 38571.8227 38571.8227 21300.9442 45826.3466 33441.8826 133842.3002 34372.2722 31195.2112 24756.8821 52935.5591 54610.9763 32289.0629 58825.954 47802.574 43973.8199 30150.5508 45542.7311 40114.9794 24597.9305 102738.4153 354616263 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 71131.998 6615.5584 871857.9283 9767.9108 14307.5244 212965.291 7166.0183 22728.0708 34221.4797 25851.1088 257140.72 16743.6824 20908.9134 13593.433 15319.9488 15319.9488 8793.7321 26657.7732 17348.0646 63540.5727 58672.04 30261.6095 86821.9169 15650.4178 339430.7829 129297.245 63270.2459 138200.7115 17382.8913 12006.5898 11991.3425 28316.2843 266018.8327 351064.3125 325292786 cysI Sulfur Other NA Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 6800.7632 10407.2748 12893.6562 7590.6945 5486.8701 6304.7965 4919.6251 16295.1381 10959.1606 136924.8904 13869.3383 17174.7946 14536.3598 6241.6632 6241.6632 26824.2321 12894.9665 8535.451 6628.1013 19629.82 7968.2254 3956.721 6328.6015 11642.1235 4198.5295 23849.6154 7450.7555 15442.1413 10434.01 6198.4263 6653.6598 15526.8186 33635.7907 325001956 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 136691.9295 55667.6772 69161.1356 24547.6974 16111.8527 156388.8939 48119.4357 27194.2972 43792.8613 126785.2282 75832.0607 2786409.5785 95828.0854 50833.7559 182743.5066 56460.4249 56460.4249 41602.0295 102676.5354 103488.0087 163133.9905 124920.9575 81655.732 53760.3444 54803.4563 63894.947 102317.3705 145818.5351 68162.8075 145441.4836 40088.7847 51654.7692 95449.0914 37998.8626 84915.5992 146403598 amyA Carbon Cycling Carbon degradation Starch Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 5836.4417 9193.7553 5173.1836 4200.0742 2909.7875 6638.7986 3274.0209 83360.3489 3695.0256 6862.5543 11970.0252 3554.4179 3554.4179 10994.7673 27257.8964 21761.0372 4336.0461 6039.8 7843.2553 9343.6754 7101.4246 13762.3568 7289.0859 11937.5233 3418.2047 11861.8872 10200.1782 81378.5424 26822.2735 338902373 ppx Phosphorus Polyphosphate degradation NA Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9850.9694 3704.5327 8029.1508 10538.4658 5823.2413 24267.9595 7888.2704 108208.1586 12918.7065 68765.9554 6377.3991 6377.3991 6082.714 18670.7564 9749.9547 6617.0151 10855.7608 8079.0052 6758.7523 6802.1099 23672.533 8184.7408 16634.5966 15315.6396 13788.4894 10084.401 21509.7929 10981.0194 10821.1498 13197.0513 296920720 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 5972.0334 12705.4401 4150.0385 3963.122 4595.6622 6890.5831 7386.5868 5677.4687 278212.8753 10157.9844 5617.7457 11320.1446 4798.9022 4798.9022 4624.9535 11265.5632 8268.458 6731.449 6257.9228 11795.194 3222.7508 5428.5224 10298.6285 2436.9795 12298.043 7548.4112 9381.8603 4564.9948 5391.8282 5376.1557 3443.5279 9238.3236 407311071 alkb Organic Remediation Other Hydrocarbons NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 6811.19 9222.1715 8079.1274 4771.9893 4032.3834 3878.7595 29732.115 6581.8278 5033.9851 964862.4558 16130.0454 5918.8696 5110.057 6833.3888 6833.3888 5128.2572 17157.1467 11067.6777 10825.848 16222.1819 5248.4983 6514.6397 4924.8469 10590.9977 5132.6141 21784.8024 12172.1304 34637.2135 4179.0534 6141.5767 21399.8319 4381.9233 8365.6515 221532639 pcag Organic Remediation Aromatics Other aromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5979.1746 2151.3406 4625.3588 4885.2534 2385.9041 5775.2761 3584.693 6049.7455 15872.2625 15872.2625 3164.2888 11063.2248 3319.2925 5474.9368 7693.8466 6237.2267 6944.5386 9039.7508 9398.1988 5492.2819 5239.5906 2577.7343 2822.8696 6408.8894 86569224 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 74651.0534 46567.4663 25592.2396 27198.7484 46045.2407 61009.1884 21789.2508 79710.1792 56145.3914 35069.8358 92026.7801 58314.8542 1666801.9708 41443.225 52205.8945 77817.5741 52824.2863 52824.2863 47335.8744 87210.9247 32344.5569 45962.5746 89077.4648 83415.9967 18176.7329 43681.1543 185233.5242 40313.1005 76447.7891 77469.6626 263348.129 23821.6979 55588.3497 104610.6447 29752.3062 98376.0283 359361650 one_ring_23diox Organic Remediation Aromatics Other aromatics Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 22590.4031 82840.6585 15535.8664 16145.9618 15446.4325 10476.6039 23583.8405 18968.4652 15172.2578 14811.1856 25765.1857 11720.0638 16997.0376 21547.6169 18260.6195 19497.0244 10084.0751 10084.0751 16235.4292 31299.0767 26291.1913 27115.5736 36650.0633 48757.9403 13553.94 14504.3737 29729.7048 11077.7658 50158.1172 22743.5724 26879.3634 15502.2323 15772.0678 16360.6281 15365.6577 35738.1296 88643342 dsrB Sulfur sulfite reduction NA uncultured prokaryote 12283.5149 13312.1788 16481.4673 15334.9554 4473.4671 25464.737 10179.6132 6596.2322 22909.7731 14199.2423 11435.6711 214770.1518 64003.4529 55755.067 40521.4504 53191.3036 53191.3036 7011.7555 34306.4115 42447.1238 24819.0218 53253.3738 8893.0678 8308.2486 10591.9931 19323.8812 21352.2247 30803.8287 11422.055 27129.2849 9362.9266 26171.708 26254.3289 9711.7534 9632.7415 398055627 bphF1 Organic Remediation Aromatics Polycyclic aromatics Brevibacillus sp. CF112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 20594.8195 5599.3917 26616.806 26140.0562 10313.1812 16463.4413 17832.8498 7202.0627 11736.2328 19906.7347 11919.723 427136.8999 18620.2545 21277.1647 42567.5497 23465.751 23465.751 6602.843 21298.248 16553.9128 96544.3044 11783.1596 14274.7858 6491.6756 10194.3274 16869.7361 9937.1383 33730.7002 19283.3529 22251.4805 7734.4637 11384.3663 12872.4329 5581.2423 16656.5731 147829218 xylanase Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 17258.0919 10707.5193 10826.7154 6324.3427 8071.9989 16104.1507 10216.1067 19027.87 21335.2842 244596.5513 12433.6399 15014.082 14395.251 91790.6962 91790.6962 7880.8228 63060.2697 20403.2565 20737.0354 33271.4908 16734.1369 12435.2448 13309.1871 15861.1871 8732.0284 37453.1792 12690.5084 22177.4711 11751.5611 21237.6086 23371.766 10333.8091 15516.6375 116266942 amyA Carbon Cycling Carbon degradation Starch Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 14448.8847 37632.3292 8702.5337 28802.0669 6367.1098 35612.5584 19355.8087 33067.5456 10030.9553 8279.9643 39056.5039 88550.4704 19623.8768 16875.6756 100230.8583 15425.1215 15425.1215 6380.2542 12997.3205 17691.693 20584.0845 24132.8374 10653.7965 10998.414 18696.0024 16621.7041 6394.5047 15209.4063 38252.5514 21296.2841 3876.5676 17083.2127 9405.1274 4735.6661 25525.9498 353674273 cysI Sulfur Other NA Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 7493.1617 18422.9322 5744.269 11267.5444 14776.1142 6278.5073 6312.2523 4233.5169 120465.7869 11043.0317 9390.2767 7039.108 3292.7245 3292.7245 7277.4413 18730.5057 9649.537 14304.5623 15923.2918 9513.9108 3238.5607 24877.9138 8648.2144 6480.9883 18199.0667 36613.9694 11541.1466 5106.7661 5419.8753 9676.7448 6454.7058 5821.1842 124488309 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6008.6937 3354.0114 5028.0526 9696.6828 6382.7702 4735.8828 133628.1724 7535.2706 6326.4621 6331.0064 22153.7748 22153.7748 2633.3703 19324.7341 9999.0224 6739.0814 6752.8022 5243.9089 3140.645 8406.7198 8024.6247 7014.8757 20763.3556 9431.0702 9283.5221 4689.0775 6764.3958 5390.3128 4976.4255 10137.3794 242222987 glx Carbon Cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 17729.3146 7424.2279 19872.8762 23695.539 6607.4291 26729.8609 7971.8799 22125.5459 16697.5014 24852.745 64987.9832 27401.4871 14968.8892 21189.761 19423.7985 19423.7985 13974.1426 46161.5352 23512.3297 47080.0847 48525.2414 67806.1641 13899.5986 25933.0705 24999.7048 28371.8483 81314.7714 31006.4813 51840.8019 16321.3318 33207.0238 18276.0357 36605.8525 58872.4112 133738320 SoxC Sulfur Sulfur Oxidation NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9451.8262 30464.1649 6294.5251 3349.9343 3349.9343 6806.36 8107.755 2137.0081 3947.3257 9841.9929 3689.0062 6551.2375 113473905 phtb Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5554.1834 10323.1605 25988.1919 3160.0026 3202.3769 2407.4903 74877.6778 6658.6448 23814.5125 2273.9095 2273.9095 4818.8263 15521.2464 4627.2602 2765.1989 6049.9787 12417.5639 12275.3585 3173.2629 5236.6777 355356680 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 3652.56 3086.4172 12701.4094 2601.6754 3383.342 7168.9603 9286.0066 4406.1736 3403.0473 2430.8767 8549.6861 18441.6702 4372.5088 1834.2831 2615.7899 4215.3086 28869111 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 4397.455 5465.5114 3867.2656 2583.8609 4240.7535 8848.7437 3066.3809 120723.6144 5091.2609 8434.9173 4223.1343 9097.3419 16356.5732 6404.2994 6677.938 2986.8488 3137.4799 3311.662 19060.2813 8230.2342 9699.2146 3333.6818 3772.2401 4480.7511 3859.0718 8301.2529 110827186 vana Carbon Cycling Carbon degradation Vanillin/Lignin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 7102.4585 9354.6944 26937.5361 8910.8004 5123.5959 6884.9786 8345.4485 4492.6042 6283.9234 4486.8339 108956.6929 5674.6611 8453.5753 11595.7386 7040.9198 7040.9198 5436.9364 8884.9423 6395.5173 5537.7619 12488.1654 9451.7637 2278.8482 3594.3306 12702.6726 3564.4238 15247.2136 12360.1653 12343.18 4285.7115 5220.6691 4592.8419 3067.1774 6623.2589 365417759 ben_bcla virulence NA NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 27111.1387 33212.3316 57587.9696 49811.1935 15554.8866 13809.7223 47154.1232 19301.771 42113.8221 45644.2329 285353.2054 10370.3017 60869.6665 29478.3856 26681.1383 26681.1383 8634.5877 295068.6432 12754.1994 12473.8206 15452.707 13883.2341 14213.2146 16170.858 20792.331 31840.1253 45076.6686 11255.0872 26464.8046 26864.6969 14729.4265 25333.9883 19991.1724 10598.5572 282324556 xylg Organic Remediation Aromatics Aromatic carboxylic acid Staphylococcus aureus subsp. aureus WBG10049 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 427344.0934 21733.0542 363821.1857 182929.205 102414.6511 267606.0697 486961.6222 402260.3614 552566.9891 204258.1482 322021.6419 226778.466 5306854.6387 329635.5082 790167.92 1754200.0728 342497.2861 342497.2861 146103.1779 420489.5095 233825.6307 791556.6192 387764.6129 357695.228 196567.7019 229333.1838 224470.5126 165331.2633 204755.4462 370907.4064 269948.0722 185947.4531 196311.6723 242666.7308 118672.252 717907.9206 118470726 cpna Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 370604.9692 144289.9302 114492.8002 487022.9624 313858.4101 198486.4306 370456.2253 139531.765 209292.932 297136.6521 348325.489 5092127.1917 234498.539 471321.2112 481400.5719 442137.5582 442137.5582 167479.9568 437920.6357 189317.9791 432365.9485 259719.3008 285310.9361 203012.054 234196.7703 348351.2488 232652.7536 718147.0673 302696.8874 259338.0411 187904.2205 218850.8829 267895.9443 197819.2718 477710.995 83592694 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 6014.6625 2087.2343 5962.934 3053.1911 3385.5056 8436.6533 8074.9904 10438.3988 8379.1514 8379.1514 2981.7407 4203.5843 3492.9686 5835.2359 13442.887 11651.883 11733.6084 4776.2668 2053.3303 5616.2483 7758.5977 24590.8599 5837.406 13898437 dsra Sulfur sulfite reduction NA uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 4391.946 20616.9552 8814.5357 3958.9211 4299.9765 4987.5382 5322.4658 10722.5453 2183.2042 7329.7963 3895.7647 3974.5236 3046.4525 5876.0448 54671.5338 113528998 xylj Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 40096.3862 11817.7593 8633.5215 27424.8043 10547.3614 20483.0325 17788.0586 18664.1664 35557.8882 11573.9477 17249.3715 368928.1328 30108.6705 13997.9055 48425.7829 28088.6815 28088.6815 42554.7343 32322.8207 16107.9408 60157.9872 51112.6483 9567.3277 13615.7858 10001.5384 14919.0637 14921.7233 64632.4867 15865.8511 18926.4465 15649.0796 9680.4122 11442.2144 8393.14 23683.4687 365174308 dsra Sulfur sulfite reduction NA Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 21783.8514 8193.6301 28721.1018 18307.3115 5261.2834 292612.5515 21752.2171 6471.27 13228.0575 16835.9094 9238.834 322526.3441 20053.2763 38273.7348 35443.372 20492.7711 20492.7711 137746.1703 24227.1169 23738.1777 31875.482 41514.5125 26789.4791 9880.2156 17496.3988 31148.8002 17189.7263 41589.556 23660.0029 40157.2915 22053.6246 13864.41 17152.3108 13279.6404 41300.3907 82791399 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 63546.6918 18771.0593 30776.3823 23665.8063 12473.5545 25928.6415 27212.6812 67080.1491 32707.4952 48808.4238 26053.4027 723216.3158 58455.8601 43697.2195 46257.2816 35916.5253 35916.5253 21410.1775 52229.9175 23369.8043 248068.6797 33052.2987 28361.519 20128.3468 18505.8552 39053.4208 17536.6034 58187.3739 20644.8496 38127.1836 19041.2581 25167.6308 22883.6486 15401.6245 44305.5189 333992664 linb Organic Remediation Pesticides related compound NA Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 114317.7857 14328.7893 41943.0456 25883.0001 47555.133 34418.9882 39225.7537 42072.8891 10645.7376 25773.7266 52189.2031 20896.3434 394424.1059 111196.3635 31665.9256 58024.1778 26867.4545 26867.4545 14242.4673 46764.29 88033.5234 24587.3018 73554.6687 33481.2107 16333.4566 14476.0265 31166.5012 17562.6092 83715.0936 36342.715 48884.4574 17466.4309 43870.9681 29704.6367 18354.1514 24112.9228 156233707 bphF1 Organic Remediation Aromatics Polycyclic aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 14000.1426 6514.9989 6290.7624 63126.5833 9315.6898 9439.377 9633.764 46775.8704 14354.3416 42333.455 613606.7593 11433.6967 69435.0352 18923.716 21157.2703 21157.2703 11049.7787 32514.1438 8782.996 22732.8157 31330.4036 9680.4061 7459.5068 11821.0956 28811.8413 18252.6348 47354.9263 13983.2863 20961.6292 8897.585 12107.8085 20331.7553 16066.2433 10405.0783 74038418 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9166.8401 8521.6328 6600.7665 12433.2459 10146.0226 65487.7567 4710.7832 8966.5921 7584.9861 4216.8889 165649.7537 13258.2201 9632.2947 6182.9799 3529.5486 3529.5486 8121.491 16480.0055 10482.3984 10305.6556 13018.7739 14026.9305 4847.5325 6193.2258 11298.8461 5590.3086 24870.8118 6435.3354 13931.6457 6337.2925 8597.5665 8405.8886 6091.025 15179.5201 2627152 catechol_b Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 13219.0008 6506.7294 8093.7951 9813.962 8252.1817 7500.8075 11483.712 8940.8709 12799.9346 6061.7877 212300.6173 9249.1249 9120.3402 6450.3522 7003.9887 7003.9887 8786.4388 13672.4018 12701.9582 12034.3912 14909.0895 7043.3628 6541.87 6599.3726 15838.8168 7779.9287 27628.3162 19123.4483 20383.2557 10145.6015 9686.0573 11290.9496 6895.7985 14986.2068 21038968 tfda Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium HW13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 9278.5402 4999.5568 17523.1698 20537.6055 9596.2627 2916.5092 5765.2533 8852.9041 3686.7764 114526.6168 9396.6567 10336.2766 5954.7036 7587.4301 7587.4301 5526.2391 13700.0342 9562.9384 6259.9145 10065.7721 12537.3519 5298.2228 4233.3518 10662.5499 5297.1412 1100990.2495 12792.6432 16506.1851 5093.6605 7681.9271 7264.2525 5343.3408 11177.8101 373251753 ara Carbon Cycling Carbon degradation Hemicellulose Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 52728.4633 9512.6711 15720.1437 34979.3225 17736.1615 11888.526 18022.3255 37824.6542 13623.7512 22704.1873 208455.1585 18589.7708 13613.887 11888.2784 11171.3383 11171.3383 9783.3304 34997.394 12030.5643 16089.3149 25568.614 15481.7425 11678.2953 9909.7652 26575.8903 9315.8395 33875.5237 28953.2428 22551.7808 8228.412 21455.89 18729.9786 17200.9625 19456.4504 398353372 xlnd Organic Remediation Aromatics Other aromatics Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 6750.1063 11867.1029 6392.4652 2527.0922 3657.5844 5433.9772 3035.9485 88356.3631 4100.9733 4132.3571 8348.9712 10875.5818 8902.8571 7700.1441 8175.9087 4889.6329 3758.4217 2944.038 3724.8067 11602.926 7565.3164 6473.5509 4504.0005 4085.375 5000.6068 3133.6631 8787.2896 153898402 amie Organic Remediation Aromatics Other aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 9094.859 24173.9898 10496.2093 6121.5919 14462.9123 11551.0951 26741.1662 10483.3918 13317.6522 18451.3626 310324.9947 16599.838 35907.3645 12832.9983 11300.0295 11300.0295 9459.9523 23883.0882 21866.7476 17616.7942 27500.1109 25657.3068 8298.6239 11477.3116 16087.2608 148027.4898 66434.5101 16534.0028 27593.6406 20268.7064 31620.9365 22947.0826 16415.2314 20080.527 403743379 dehh109 Organic Remediation Chlorinated solvents NA Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 13518.5563 12847.7974 9657.5712 23491.3159 29936.084 10403.1299 13766.5113 3594.1466 6425.4007 15732.1343 6378.2873 143773.3916 6844.4169 11956.2871 13214.5555 8934.401 8934.401 48334.4167 22727.2665 14973.7561 11628.5839 4491.9917 11048.2075 3406.3456 7571.8321 20718.2868 6257.791 43803.2497 39437.2458 18368.8304 6757.015 7974.4314 8118.976 4888.0156 5369.6326 114327520 tktA Carbon Cycling Carbon fixation Calvin cycle Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 5429.813 17532.2424 6987.8597 3644.0996 4221.1644 4979.9843 17974.4483 3735.1215 115771.8125 5938.3761 6136.1412 11519.1755 7837.0439 7837.0439 11332.8866 5571.8991 6377.9127 8206.4424 13214.3096 13226.356 2746.0809 3197.0481 6984.6037 3361.2609 3300.4138 3466.8508 2257.6818 5195.4845 291537175 amyA Carbon Cycling Carbon degradation Starch Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 4623.3717 3437.7685 4952.4292 61595.2264 6681.0138 2869.4517 6343.4756 4394.5168 4233.307 5545.2781 4588.5226 2729.0499 10151.1444 6186.5436 6010.3927 4031.4282 3496.746 2345.6161 7752.6876 403649308 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 122484.9056 40730.3769 54321.8171 157114.6646 530519.3624 36412.5461 106633.0275 110222.3012 120678.5433 77246.0477 110386.5406 81629.4862 2868347.9152 104374.4891 162791.1438 211255.1046 134438.8812 134438.8812 54279.5186 126218.5759 85014.593 99379.2329 151892.4597 107383.209 47259.7083 70422.676 92851.1841 90771.7011 192819.8287 83186.8578 114038.6219 51911.8574 94515.0873 89693.6356 82210.3083 118533.0691 270277714 pula Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 4586.0314 617742.3038 17348.845 4449.2134 3872.6975 7193.8295 25914.6388 68183.0065 11148.9305 13328.5775 9377.8543 7289.5938 6693.131 5949.9437 5949.9437 8893.0359 14707.3193 8800.6979 6563.079 4298.7078 4108.6095 50127.9543 9843.0602 11011.5322 15967.2042 12020.4216 10987.1402 3170.6553 6879.9234 152975381 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacillus cytotoxicus NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 14850.6471 23012.2225 11809.3482 9412.0344 12977.5916 13310.1728 16452.5666 51795.9656 32601.8843 32281.4157 38431.844 15306.882 417066.1714 17405.4754 16688.7115 33992.1495 18236.5642 18236.5642 7397.2661 35027.6211 13559.1155 6735.6786 61167.0111 28829.3499 26903.8199 17298.8558 30986.4919 31641.0546 42598.0746 20910.5684 20719.8788 11212.0926 16135.3831 20460.0105 15965.4082 22227.6168 357200590 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 6529.2891 153553.6354 7787.1987 7318.9926 4151.8471 3378.6103 6003.8627 98163.2917 6824.9758 5579.4241 12709.7932 5976.7255 5976.7255 5306.5971 10359.2372 4837.6197 3993.5829 6918.8779 4933.5572 5491.7657 2706.5853 10513.4565 9468.1392 4950.097 6963.9525 2345.5433 4752.0906 4237.7338 9819.4907 336180146 poba Organic Remediation Aromatics Aromatic carboxylic acid Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 27721.3163 201788.9591 13014.7722 17864.056 31360.4279 9049.3335 7371.3762 6046.9507 17798.2002 14042.0157 21671.3258 293279.7762 23688.2053 15147.2077 109726.9568 10536.7931 10536.7931 8820.7862 22762.6105 16811.2489 16736.7748 43449.8584 11759.8114 8826.8492 9323.7779 15199.4171 10673.5562 30873.5343 15559.4326 19080.2064 9897.8211 19831.877 71528.6053 64277.1461 19431.9032 169758448 cysJ Sulfur Reduction NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4194.8502 7666.9605 7690.103 3198.285 7347.8449 2557.5736 132638.252 4872.0949 8307.7755 14714.5946 3963.6258 6544.0802 5694.056 3682.1347 10735.5572 5628.8376 18417.377 7155.9204 6786.6376 8870.0552 5048.6963 6620.987 3619.1241 5688.3049 407275259 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 17009.03825 11806.5104 11849.8984 16561.5305 13326.2123 16417.2631 231916.0993 19680.7496 13669.43595 91776927 fccab Sulfur Sulfide Oxidation NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 4302.1228 2445.6406 5077.4168 2312.3504 3734.0179 6603.9272 3051.2856 72907.5795 5312.9841 5129.0533 4985.1384 10485.8244 6804.9188 6541.1959 9001.1243 11882.4516 3231.451 3925.9396 8495.2539 2407.1948 20955.4095 9333.6022 7618.09 9778.0408 6018.0016 4280.4735 3679.3716 6043.9813 293395660 narg Nitrogen Denitrification NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 10970.7664 11025.9542 8553.8967 8851.1225 7440.0969 8368.7299 9702.8847 4593.0399 224125.854 15478.1355 7872.1399 11836.4231 5473.3693 5473.3693 8751.0038 15415.4522 12626.2187 10181.1564 33199.1681 14821.9775 7721.2646 8686.09 10730.4582 17025.1564 28219.2781 9890.4774 16908.2758 6717.9721 9058.2464 14888.2941 8161.7712 12150.0756 299749935 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 9034.673 41458.1793 5745.7822 20500.1315 3027.1125 3775.6973 4278.8038 7073.28 7314.2393 123530.6859 7033.8643 7839.8889 12059.3588 6180.6762 6180.6762 13586.1624 12020.4566 5173.3151 6056.3729 10457.9835 6895.0006 6723.077 6690.4635 9889.9986 5782.0756 13755.6736 11683.5682 12737.6999 5741.1341 5223.3774 5331.4226 3979.1355 9134.2044 150864865 phospholipase_B_fungi virulence degradation NA Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 5957.7705 30288.1 9446.9742 5303.8395 3174.119 6019.3966 69956.4058 6375.7197 8592.9473 2582.0661 2582.0661 4562.8167 9136.7172 6615.5121 9030.4429 17016.9477 3926.4667 5924.8649 4129.6509 11222.1086 6059.3659 32758.9086 4354.3583 11897.3003 8374.7818 4470.1647 10222.7991 315498338 chitinase Carbon Cycling Carbon degradation Chitin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 6278.3596 6147.5111 6242.8883 33401.8989 1950.9214 4941.4914 16291.4085 2815.163 135568.724 5342.0205 31459.189 2025.4747 2025.4747 3785.1878 10250.6942 5451.0995 5484.319 5035.7836 8637.8954 2471.6222 5533.8908 2065.6445 10247.1392 3162.596 3040.3074 3687.0512 2198.0093 5635.9836 254502246 ppx Phosphorus Polyphosphate degradation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 4117.0161 3816.7791 8872.5336 24982339 nitro Organic Remediation Others NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10116.1893 13740.0762 13585.7854 4182.3673 7138.6692 13063.2644 2555.6033 20390.77 16773.1606 7896.9967 216062.7498 8181.797 12515.8299 10665.5053 10549.0985 10549.0985 11403.8189 13819.1406 7763.6454 4602.6215 13179.4625 14789.3101 3622.8368 5446.9255 9865.5852 10899.1337 19396.4603 8718.9257 14144.6888 9630.5562 7074.5804 14134.3193 4184.5201 187631.7953 262395184 arsc Metal Homeostasis Arsenic Detoxification Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 22812.1842 6645.1514 4086.9172 8412.5331 1692.7721 7028.9558 16980.0149 5684.2794 9383.0411 21060.9386 4175.9625 13550.1915 5689.5752 9262.0492 10864.3032 10864.3032 12828.2798 18026.9654 20155.0533 16864.1233 18810.1441 8900.6661 24327.3661 11399.206 19228.5146 11074.1038 49939.9375 18767.626 17422.0771 5979.4745 21029.1027 11781.9144 5276.4916 11413.3777 371445181 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 5227.4814 3993.8356 2961.6032 2583.884 154532.086 5657.4797 5365.8873 4706.6021 17650.4317 17650.4317 7828.1133 4503.4499 3858.736 2586.7769 8009.124 11006.6922 5286.1731 5421.0246 2249.2603 5099.0968 5765.9365 3463.1066 70673011 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9797.735 6263.9021 7247.9607 9369.3928 7123.5696 6703.5896 3512.4107 7713.3257 8623.357 3969.8174 183771.2979 9133.1582 7197.8721 6588.8028 5090.4408 5090.4408 6498.0773 16993.4226 10569.7328 8148.1854 15675.61 21858.3491 3725.7074 5759.1158 15286.312 6864.7248 21183.2835 10176.2193 13802.907 5694.9245 8047.5948 7494.1796 6274.3079 17681.3668 119964666 rubisco Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus; 16086.1733 18324.3586 36363.9202 15143.9712 10362.2974 31289.2146 8251.7958 20488.6332 14700.9162 87747.7108 339847.2824 29569.2098 17114.2094 26259.7272 22486.5597 22486.5597 17188.3625 30108.5615 33216.4106 13181.6584 20368.9211 24321.7121 15021.1919 16488.3913 36069.1043 36085.0866 184938.1893 31130.1353 31495.7023 9717.81 14303.1573 24763.1164 9476.9478 23313.5527 33572392 tfda Organic Remediation Aromatics Chlorinated aromatics Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 10887.5058 3001.4079 2930.8698 5500.7534 2540.3355 5114.3738 34332835 narg Nitrogen Denitrification NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 134136.1359 491293.8332 161486.6373 250015.083 64623.1325 288371.2221 132262.2068 48099.1086 131725.5558 279704.4247 116663.7053 819556.4791 72444.5871 94813.1111 138158.9608 70406.543 70406.543 50854.3641 201847.1714 48859.0077 253734.8234 154940.1052 47441.4554 106407.751 102881.1286 69624.7026 173819.4245 279897.067 62745.661 122454.547 42832.7537 195386.7317 66712.1436 57116.1326 75021.7301 340783113 SoxB Sulfur Sulfur Oxidation NA Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 27142.5414 11083.4797 80409.7525 9326.542 6959.6239 4155.8411 18684.37 68666.5834 29872.0388 185897.8017 19206.7885 184225.2887 83894.0272 45774.8336 101260.0806 59264.5406 59264.5406 15856.7239 40285.5132 26947.8129 29259.1711 30475.3055 12963.3032 30356.9962 22150.0914 36812.5566 50505.9866 50058.8514 30841.2601 47995.1225 15836.7581 22030.9791 31030.0395 13244.0555 10978.4979 403404591 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 13650.1573 19001.4419 11398.1472 29505.5232 8086.9227 9443.9815 13614.3712 5666.138 10915.7997 12404.2219 10960.3445 202345.2846 14946.4305 15832.5676 19230.2036 11169.2879 11169.2879 17117.5777 22943.5112 11995.4858 11184.8161 9985.2666 19601.8183 6612.4789 5955.3062 35317.6542 6666.561 36981.4379 22611.2282 18999.4472 6814.0239 12074.6397 22040.261 10812.9823 16635.0857 242799103 p450aro Organic Remediation Aromatics polycyclic aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6341.6784 4526.1349 10246.4673 4444.0944 3626.5871 3275.0634 5182.798 2945.028 92160.1024 5862.8235 4099.7409 2854.1844 2854.1844 3861.5931 13505.6219 7202.7155 4101.5185 5196.9293 7998.441 3215.7193 2876.2006 8168.1027 7302.9168 10725.6692 9124.1981 7711.6515 6165.2144 13406.0001 4146.7166 72530.7325 7455.1834 307633085 cysJ Sulfur Reduction NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 13549.0263 29856.358 2524.526 4102.7559 4271.1193 12623.9812 15133.399 1550944.8102 19405.9612 5650.5429 10176.1981 10176.1981 18283.1076 11437.289 5706.6317 27884.4426 12152.6541 5753.1256 3361.8446 3680.3958 5230.0953 12532.1513 19731.5996 5915.0608 6144.7232 2725.482 6519.8732 12055.0342 39400.9269 119537378 mannanase Carbon Cycling Carbon degradation Hemicellulose Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 94194.6114 25247.0319 19162.2304 89207.3772 23256.5888 115697.616 40557.2781 18868.5967 36557.5147 47658.3326 36484.354 576777.6349 45569.9148 67143.2447 90165.2958 25492.4604 25492.4604 38650.3157 90892.3851 24947.9474 49462.3072 44670.2875 47398.4077 20963.6493 58212.8249 35371.3887 29600.3032 206554.1482 48735.1003 98129.004 20385.8227 31177.3938 82187.8819 29417.5197 167562.1852 238711220 cysJ Sulfur Reduction NA Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 58809.8794 21017.47 26869.2252 51153.5489 43994.9692 10919.2064 30045.675 48862.1787 24780.6018 138990.0494 36635.6108 29970.5577 781900.1891 35834.2909 36988.0471 43642.7543 19124.471 19124.471 56382.1096 44589.7616 32220.7602 47615.2076 59126.5746 207776.8973 23758.9495 20728.2811 41192.6966 19497.1611 164251.7452 41034.5998 40749.9704 112700.1515 16942.7478 43306.3495 34529.2735 123829.3014 34014589 exoglucanase Carbon Cycling Carbon degradation Cellulose Athelia rolfsii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 3894.6424 5272.3411 8572.8446 6836.9255 17026.1103 5522.4379 4176.9383 26108.5856 2998.781 103320.6758 3945.9039 5751.5709 5123.1342 3745.433 3745.433 4342.4457 5062.2988 5997.7857 10261.0204 8208.0373 2905.9238 4923.8424 11471.0763 6865.7858 20471.3696 7901.1743 8421.749 5695.5535 4261.4242 6659.9349 2305.4022 10223.4194 126436366 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 12162.1318 1780568.2652 11192.1575 11624.2455 24880.1617 5170.5726 61849.1398 5669.6313 6064.2643 9669.9478 35571.188 137742.2023 187193.147 14874.8205 7021.3401 28222.5539 28222.5539 52456.1605 51861.1489 14949.591 14022.4122 10125.1685 7748.0571 3254.3078 8536.1616 20764.1713 11214.7297 26453.1773 20522.2791 21366.1388 6771.3705 7514.2056 14810.9914 41673.9198 23569.1225 392967439 xyla Carbon Cycling Carbon degradation Hemicellulose Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 36311.9352 12502.529 13441.9295 60172.4838 27353.2637 20244.2835 9894.2364 9573.4131 14475.6474 14379.1586 11376.6726 240856.9962 22275.7502 17192.1188 11366.8779 9730.3754 9730.3754 8156.6212 27186.7611 13898.9051 16702.1966 55521.5281 28120.6073 10867.4915 9171.8688 16872.2258 7290.5714 30474.4479 13980.8795 22135.8264 13940.0668 10596.9173 11658.8823 8444.1108 18781.2684 253576694 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 12344.4322 49348.6824 17381.433 8930.0775 3552.2829 8656.3906 9443.1634 14649.0881 4397.2042 6367.0487 6347.97 10297.2192 12799.8734 6472.3317 6472.3317 3618.5805 25604.0403 6931.0385 6332.3033 12416.5386 9454.9535 8625.8142 13223.0024 10016.3201 27305.9139 18648.073 21860.0223 5185.4272 10487.273 30394.9971 77691.1535 11751.2351 76056949 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10956.8475 5780.4773 2583.6006 4579.2093 4566.7161 4824.7885 10666.8953 6688.9044 107853.6108 36372.9293 8172.0108 10691.5862 6436.6522 6436.6522 3807.0188 9959.4285 7040.5931 12215.1431 9664.8662 14008.6371 2649.5466 3741.8802 7905.7761 3938.7556 21674.1127 15878.5959 11724.2276 58710.424 25115.6169 6365.1125 6377.2431 7702.7263 304310503 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 51475.9865 21583.6896 25894.4219 12272.4071 9257.3026 36497.5359 19137.7712 46788.3326 24582.3563 37274.5191 93423.5015 32277.5415 2053683.472 24475.2393 18074.1516 123108.1168 72953.6394 72953.6394 18365.0836 82093.5537 37104.7727 46982.297 64202.5767 43513.2382 18868.2933 16667.7142 42094.0021 44045.455 76076.645 38040.9486 38221.6542 18516.5048 47414.7266 26944.6963 28766.355 27280.1649 55469821 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4533.2719 4439.3565 2615.6592 3240.8861 63802.835 2577.9223 2577.9223 7594.7155 5502.3837 7782.8306 2535.779 9851.0151 6243.0143 6007.8508 2172.6893 157679479 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 44701.6805 36932.5759 17663.0829 34525.7179 29940.5607 25411.4126 30324.0198 33033.4237 14460.6919 25875.8151 23489.0682 31001.9792 710142.2407 39930.9769 32487.523 33559.8088 20558.0911 20558.0911 24571.127 52365.1798 48776.4089 34414.9898 27806.5126 99689.7628 21547.3596 30942.9503 49570.8217 48298.364 51642.8275 25200.5423 35283.0451 26849.062 25670.6755 62384.4704 16493.9695 50108.4026 353193788 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 29784.196 18066.6521 4512.9999 31404.4258 3272.977 49109.9223 32492.9611 89220.1983 10629.5435 6006.0721 14511.9582 3510.0572 3510.0572 10212.9227 16207.7641 19465.1611 18299.5454 72675.9008 13774.8387 44456.7598 10376.1911 11112.8567 12666.3275 20978.7826 18430.5843 21053.3838 4271.2642 14848.0962 9743.2381 12778.6035 29058.7181 372471993 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 4784.8391 19638.3102 7849.9775 8821.8781 5309.6636 2138.736 4399.4 4025.8208 5814.7705 105245.412 6156.4725 7175.1012 11293.4717 6842.3374 6842.3374 4174.5404 16397.645 6888.7006 16816.3874 8028.9954 5896.2578 4053.873 17731.8747 13982.8348 2994.9708 15556.2036 12092.2178 9971.9397 3222.9619 21723.9211 10999.1723 2932.5182 6872.5097 211586274 tfdb Organic Remediation Aromatics Chlorinated aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5106.6147 2389.8762 51546.0264 68448.1199 3702.7974 3716.9027 3716.9027 4191.6048 6266.0823 3423.9821 6372.9258 5350.8344 11985.6445 2434.9867 2178.5206 8051.0797 2113.5999 4345.4053 9775.2262 5446.053 151357509 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4657.8675 105958744 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5572.0234 26629.7676 7937.3082 13817.6259 56989.6361 3582.0874 5516.5833 4626.518 2835.7995 2835.7995 2677.328 10917.7619 4117.3094 6911.4116 27838.406 3335.7974 3434.2246 2703.0458 32491.7505 6113.7746 6208.0678 2766.5229 4160.3234 2139.4908 5881.8393 157912047 tktA Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 16169.1224 13154.5854 13830.2406 41485.7766 9830.0275 8175.1175 16208.5138 24785.0302 8061.0465 15333.6477 7135.0759 924898.8132 14205.3421 29132.9899 44038.7363 13420.0719 13420.0719 7289.3973 32087.1427 34536.2817 48316.4814 27945.9016 15525.5647 11960.8141 12602.7537 18681.6556 10338.28 41051.8283 16744.4689 22517.7064 7519.8688 20740.4912 14588.3087 31118.9973 18269.2394 298247386 mer Metal Homeostasis Mercury Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 4682.3414 2955.8833 8044.0196 3490.2036 3937.3263 3928.9586 3928.9586 6206.233 54100.4649 2357.3134 2650.9643 7134.4249 7842.3907 12524.4925 2968.3043 3843.2886 15459.8891 2164.8966 422314461 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16103.3494 23655.6434 13469.0228 7744.1943 30592.5081 6254.9293 12848.559 22542.0639 18375.4566 1244256.2303 19023.0175 11012.465 51688.6379 6108.3423 6108.3423 11020.4866 36111.3624 6038.8059 10102.9363 16051.4507 4888.391 6866.6715 10525.8013 11140.892 16112.6084 21897.8712 17452.2999 22535.979 8702.8018 14478.0551 24286.9574 5217.0458 40101.9418 122089195 amyA Carbon Cycling Carbon degradation Starch Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 4307.003 5759.1126 3921.8991 7151.5609 3219.8146 2755.8461 2197.7556 4379.2819 4122.0811 2509.2581 95335.677 4361.4467 3457.027 7927.7367 5622.4979 7078.8292 3720.2572 3072.004 8230.9523 2521.442 9806.2043 4086.5807 5283.4461 1792.3446 3237.9401 5133.5879 2611.0924 8135.8158 145217504 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 47182.0273 1080442.2848 72902.3893 162199.6576 48504.8962 21607.2189 47356.3745 60393.0359 11658.8399 21510.6298 54662.8299 86025.7813 2235158.1069 40996.608 42263.2741 28734.2353 39014.8579 39014.8579 87677.7274 95115.4892 23446.3262 31307.982 30839.4063 515807.14 16356.0214 27487.3298 59506.868 38789.5196 232979.9004 52050.9531 42195.9465 19705.0151 33738.3253 34292.8213 50562.7835 509657.8269 398898480 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. GM50 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 34441.6342 2275.665 2299.6063 7278.8706 5091.631 2419.1909 5140.9505 3319.1733 13415.5701 5753.2512 5400.741 3519.6725 2926.8645 13453.6928 4504.5014 2833.8071 3533.8153 11235.7845 2431.5808 7266.248 25900764 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6806.7745 1434635.5704 4317.2825 5825.7506 7493.189 4375.1112 5592.4898 94252.3394 6513.0282 4827.9293 9293.7252 3569.0796 3569.0796 9414.4343 7934.7888 4723.1333 2891.2338 8430.3668 17318.5619 6963.0763 8342.8117 3341.4716 8181.8827 3260.2551 6607.1921 113525909 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 12581.0906 39241.5671 34225.8999 9445.7142 9552.5244 21232.9548 5662.7638 18609.634 11858.2226 11498.0003 216950.6669 8085.5074 26998.3101 11582.1644 16766.2993 16766.2993 6735.9395 14794.6338 7002.3148 12079.5941 14268.4584 11880.887 8977.4627 10885.2668 24941.4809 7437.0425 44679.036 17297.8998 22443.1168 57297.2544 9225.5036 35124.8782 6304.3468 19144.0742 73762919 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5853.6133 11166.6182 10202.4962 105000.6858 5514.5161 5731.7377 5333.3926 2694.5947 6058.8509 35535.1037 6072.9565 139266.9175 8798.5687 10936.9586 53010.2064 4112.7079 4112.7079 3867.1531 20459.088 10835.419 23645.8083 9601.4084 8353.502 5441.5411 8286.0817 11014.0304 15015.6788 20258.8066 13074.7382 14754.8997 5400.0432 6510.6619 12124.7871 5748.2686 5080.4405 158111101 tehb Metal Homeostasis Tellurium Detoxification Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 278018.6398 119014.4886 188651.5473 108558.4303 139482.4963 110429.7024 68967.035 268972.3371 144287.0629 120199.9018 125669.5532 152064.8128 1459334.1796 66658.2561 84942.22 211447.5151 183954.9859 183954.9859 93450.7432 141196.2531 56730.8848 134109.2714 250532.8252 73698.9459 53960.2465 74591.0337 104705.3769 133633.4747 535843.472 110933.0377 136562.6626 109774.7516 131246.8495 105812.481 120629.5628 545139.9525 238582297 nitrate_reductase Nitrogen N Assimilation NA Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 5565.8949 18484.2052 9474.2056 31648.9628 7260.0086 6663.4843 42669.9824 16898.7855 16519.5012 15098.7606 9224.0468 190061.0098 27629.0397 15826.0416 32113.0018 31797.6844 31797.6844 11645.9273 24086.1418 6174.7481 7283.3159 8076.0995 8789.693 13579.4924 13086.0597 31937.3664 7934.6167 220717.5716 14286.2406 23402.2211 11336.7085 13691.2322 16766.972 6757.2199 22327.709 374846730 cutinase Carbon Cycling Carbon degradation Cutin Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 32531.89 23546.268 37153.1172 16788.7081 17712.4794 15490.4589 23434.5244 12838.3421 16222.4501 19959.6098 12751.541 563350.5936 29070.252 30569.7481 20521.8491 13965.7682 13965.7682 13960.8622 33344.7709 23701.739 34910.1558 27813.2153 23166.7627 14475.3145 14476.3998 26307.0904 15508.1349 53695.5343 26828.2807 53482.4028 20637.2704 17088.3345 21495.7218 14403.4485 30387.3584 221533924 gdh Nitrogen Ammonification NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 33933.9484 19085.2872 24431.4822 52997.6434 73031.1804 27289.885 33151.0427 36156.5837 25812.1516 34072.9322 41387.0529 25728.7119 803173.4127 31828.0141 36276.3598 84870.4719 19369.6901 19369.6901 24832.1599 59198.9063 30044.0124 35973.7646 33335.0217 41325.3466 16562.016 25721.8214 37538.6075 24571.3803 71407.2485 40018.4486 42839.9851 24817.8335 21475.4066 41986.5849 23748.7097 58342.6023 133910050 hbh Organic Remediation Aromatics BTEX and related aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 25455.809 12421.5867 21745.0418 33557.82125 10599.8935 10850.489 9291.47325 12222.79355 7668.7262 10519.1043 10253.2749 129074.46995 8321.7462 18516.7193 23760.00365 9671.59575 9671.59575 5243.26165 16168.3171 9646.08705 9988.7801 23745.90155 17097.07975 5530.6917 25050.6392 5053.1537 20471.81155 12831.6002 14049.87645 3227.255 8103.86675 9049.6272 6094.3605 11514.91325 343917372 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 101939.9685 18792.6251 109692.6824 15214.4838 39002.8602 62137.6671 32783.1299 20817.5516 26313.1661 1226765.2942 24351.5561 103360.3327 71568.8533 51441.1691 51441.1691 16024.7187 59394.4289 32314.5591 395005.7513 39507.5014 92807.1701 48536.9102 34765.7762 50977.8064 23980.1821 98713.6138 35407.3231 47668.8827 39263.939 25041.4971 108105.3306 20206.4369 13530.4793 78062692 amie Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13832.1287 80221.1197 19777.9629 56590.6906 8573.6758 17027.2314 4316.214 13061.5677 32073.8154 9066.2046 156149.8922 108464.8556 11652.1636 32139.4833 34579.6333 34579.6333 14345.1387 14920.863 13624.8615 4643.2909 16316.6499 7506.7002 4527.2837 7820.7339 16674.3253 19121.6268 70245.7201 21270.4184 15827.6072 15754.1797 10493.2858 10442.9944 35372.6905 7171.1186 157272192 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SN223/29 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 8197.8534 1145818.6422 267906.8732 5082.5948 2670.2178 9116.9515 4412.1322 6627.2355 4797.5246 89619.6124 20529.2645 12930.1618 14720.0949 4436.478 4436.478 7944.5988 22756.301 6687.5132 5649.5703 18945.2593 123181.3934 3634.9214 4175.0276 7331.2268 3956.7723 15263.7596 17614.3908 8752.008 4030.6249 7939.7666 6438.3572 3744.8053 13491.1835 357939009 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 27911.6667 67169.0236 5412.0555 5412.0555 8799.2298 5446.1527 4312.8438 3633.0067 7042.7328 4648.3566 7094.342 2555.802 12463.0613 365805267 terc Metal Homeostasis Tellurium Detoxification Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 29542.5871 27552.9064 6203.2942 2012.4103 17994.3865 5012.5451 3843.0397 4845.7222 5908.2194 115608.3445 53333.3901 6283.9235 7765.8772 13179.6441 13179.6441 11070.4481 27660.6558 3733.8396 502592.7979 25261.603 4839.1255 10998.2997 14564.5427 11335.72 12037.3002 34130.9456 18929.5017 23571.3089 7332.559 8748.1794 7877.6826 10781.9748 20410.9723 165880017 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7223.6716 3031.4446 3603.865 7202.5325 4524.3222 21731.7186 73942.5137 3341.0924 9761.1206 5639.7438 3765.8148 3777.2018 2177.1273 8787.9665 5903.0239 2340.648 3814.1917 3179.706 2184.8316 396092267 b_lactamase Virulence Antibiotic resistance Degradation Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 10594.2793 26869.1995 49080.815 7681.7031 5452.457 3070.6986 8535.2362 53432.2378 5659.5812 89551.0324 15456.1092 8766.86 13987.2981 5155.6754 5155.6754 13895.1346 13566.1376 8957.0491 8139.545 48451.597 7843.348 5396.8567 12391.6617 10667.1021 8089.9578 18263.6447 12021.8607 15185.5706 10530.6187 7032.1066 8941.0118 7536.2261 9085.5282 114767113 tktA Carbon Cycling Carbon fixation Calvin cycle Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 3561.9076 5011.6535 78325.4458 2864.6328 3273.4568 2838.7635 8211.1208 229493157 amyA Carbon Cycling Carbon degradation Starch Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 5540.2291 4200.8213 15566.4591 3968.7226 3370.8582 216016.1289 6559.2034 5030.7173 78096.6022 20581.7749 4013.1975 4383.9093 11699.5186 11699.5186 8550.8937 6549.2008 4225.9878 4457.5033 5116.0485 4984.0185 3504.7896 4957.2688 7332.7045 3616.2911 124808.508 15945.7343 6280.9776 1843.7326 3141.3545 10028.3597 338167207 cysI Sulfur Other NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 40805.1024 80300.5401 68403.8532 290560.6094 107365.4671 59371.3508 61497.2526 33348.326 35029.4734 72772.5813 35916.1009 836375.4644 67318.3198 59122.7174 33910.5702 58374.7004 58374.7004 36531.1086 66878.5849 32603.8014 48298.7411 56867.7613 58962.6352 24897.8504 26705.7971 80266.0557 41368.406 107565.4953 45377.0206 75951.5696 18327.6786 32216.8798 38564.7345 31227.1692 43704.5404 112462647 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26231.9953 93134.5466 24366.9102 37901.7257 12732.0691 9585.3597 12923.333 5756.3334 14177.13 15998.8282 11968.2982 361534.2538 17583.5285 18512.5473 16109.4387 12101.8247 12101.8247 11971.7217 24201.4209 20895.9677 82794.3538 21978.207 23055.1535 29267.8491 21170.0003 29040.6705 27600.6455 34464.9179 25304.7863 25014.64 9797.9505 39266.0579 10961.577 17600.1845 49613.0487 112441908 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6051.1222 4118.629 6038.453 2278.0475 3630.0452 2960.7039 257056038 xylc Organic Remediation Aromatics BTEX and related aromatics Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 19855.6547 7198.7078 6012.3824 7432.7237 2649.4882 3725.5875 2568.9087 20247.0735 7027.4653 7442.338 143438.851 8600.2808 8653.8751 22351.7758 5547.6661 5547.6661 5504.6282 12086.4217 10546.6245 20480.0698 10167.2661 8021.9445 4353.6072 19227.7311 7647.0777 10230.1868 29868.4837 42065.5379 5189.2855 9377.9893 28321.2796 18469.8028 7726.7005 119391395 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4811.1181 5429.6948 3501.4329 4152.9716 8045.7528 5626.7363 3233.9024 123129.8111 6447.1963 7211.6301 6950.7078 2998.9167 2998.9167 3440.7755 13330.2643 8485.4004 10048.2875 6986.2524 3081.7132 5322.6342 7978.8675 7996.1441 15772.8367 7632.1977 13019.5965 4931.1435 5999.0258 5959.2365 3864.8454 11653.8833 117188415 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 34775.2887 6884.8064 14703.9816 498514.9305 27673.8172 22382.9984 31291.4977 17688.756 15943.4371 41297.4347 19495.0048 193112.0331 13535.7008 31496.5515 14911.8393 13864.7794 13864.7794 9669.1094 22111.5525 21384.0756 9835.1833 16706.0606 7517.2687 9541.6583 12010.6147 35263.0597 34307.0233 116548.2534 24947.1612 18443.5193 13224.422 19853.7446 21948.2868 20261.2071 11968.9974 223470351 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32576.6194 12100.694 22374.1431 30452.7448 5849.1892 19960.236 12611.4455 11941.9319 19365.2053 31691.6412 12127.7543 493931.9556 35167.9257 34553.7406 25150.9739 13619.8258 13619.8258 18607.3647 42442.0611 26476.0135 32114.521 37020.221 44589.8584 15747.6931 15544.3502 43876.5641 11860.1373 57980.0765 33337.0318 30640.8761 11200.7928 21235.4438 20168.2499 11422.2782 36476.3248 302581897 mer Metal Homeostasis Mercury Detoxification Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 7130.0667 25726.2261 3354.8459 37925159 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3917.2029 2078.7496 3579.5226 85991.3702 4674.785 2924.8274 7171.2984 4911.4142 3250.6163 2400.4663 8067.454 5211.7344 2006.5043 3707.7764 4240.2183 3509.2648 384046004 B_lactamase_A Virulence Antibiotic resistance Degradation Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 22479.1689 43765.7124 6859.6861 13101.8921 4257.6627 9272.0204 239049.1895 12796.8749 9563.5749 24508.943 71839.9265 811661.5343 17679.317 21712.946 18430.3694 33888.8565 33888.8565 9679.8305 56116.7173 14417.1918 23579.009 45114.588 19091.2781 19034.3807 11772.9035 16633.5284 8315.6791 28127.7509 76991.7293 15817.4002 11063.1116 16256.5136 14248.2245 11375.0846 29029.7132 315620965 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 17052.1338 10437.3287 22784.8651 20932.2759 14659.5335 4766.2503 24642.1632 19709.8819 17602.9394 17666.739 20389.4935 13779.9433 333111.4953 26697.407 19328.845 19373.6189 12781.0526 12781.0526 15634.0524 34024.2839 20660.6847 30632.2568 32041.8591 31999.6365 17412.3458 20819.0611 29852.4284 61003.5503 13586.1369 24903.7271 17029.3409 18856.0528 14205.6173 17151.1071 30294.2576 225040069 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 9266.1395 2761.0852 61281.5662 3215.6713 2562.5606 7573.9511 5877.6251 7857.7151 4470.6243 5230.4784 2403.7631 5814.9873 1894.3175 8588.0029 5677.0964 1767.1065 2896.5118 7854.2963 4954.4319 269218096 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 147846.3949 4609.5677 59427.3347 3301.0278 1937.6123 1937.6123 6035.9239 2256.101 90420481 arsc Metal Homeostasis Arsenic Detoxification Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 127494.3086 18655.8513 56368.5787 28644.9571 16749.9581 8545.9784 23324.1732 27374.0926 20654.1021 24906.5412 95330.8896 12618.4813 678359.6036 37461.0911 33040.6444 25491.7981 18286.0411 18286.0411 22123.0647 47514.1987 93551.5504 32644.6356 31294.6404 44926.9346 19494.0649 18121.0792 30803.261 16651.0921 54647.6592 16444.3147 29191.7321 17357.4308 20066.7609 45457.5472 16306.7865 53434.4352 395219249 nosz Nitrogen Denitrification NA Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 8762.0854 4165.7473 3306.2558 12869.4261 4088.4977 2266.4214 4192.2861 3957.3052 3955.0838 3955.0838 2980.3132 7668.3087 5916.6121 4311.1746 4660.5743 25644.2546 12251.2316 4820.0297 5157.2256 2376.4799 4506.2322 60493057 linc Organic Remediation Pesticides related compound NA Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 7670.1781 3832.2956 7011.7649 6282.6354 4862.7785 3581.7549 5837.3128 3012.8529 279036.7719 10616.1168 4601.5392 7653.5265 7653.5265 5078.9623 9832.1205 7474.4671 5911.8679 5264.098 6248.0647 3107.7147 6918.8839 4331.4981 15118.3936 8400.4239 9175.0584 3575.6895 4872.1959 5384.4511 4277.5036 7871.5666 21221609 chnb Organic Remediation Other Hydrocarbons NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 143502.4226 73849.1676 12604.8806 32031.5383 5409.8063 39027.2866 28244.7813 14095.1511 27534.0988 33645.0483 35618.4432 673630.0043 62809.462 30116.6172 149124.9367 38547.8139 38547.8139 10699.5523 163544.7152 21597.7407 107453.2159 24496.1661 22909.5133 16025.5013 51434.7718 33463.386 21977.9523 63902.0262 43203.2254 40656.1117 19502.5597 46881.8731 116847.1658 25995.4618 69627.0223 118174130 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1322768.9128 29453.8662 146864.7412 78765.39 260869.5193 37886.0032 63347.5084 70525.0372 123712.9745 195035.9132 181856.5295 101534.5522 2587774.2501 107114.4606 154718.73 317050.1423 126049.7177 126049.7177 51780.508 105687.8569 108092.3596 141338.2355 368427.8896 135735.8405 121269.6927 106058.7289 116300.3477 77482.1852 224357.5793 153583.444 151539.0999 46993.178 97818.876 139919.3962 46972.3607 171943.9894 50982468 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5014.733 19958.903 2847.892 19281.5842 4971.5741 6053.8787 8546936 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 64932.8375 4509765.1285 1536143.9404 5066.4369 48670.0531 2806.0426 7521.3265 16943.5441 4482.2909 5700.9705 9622.5673 117029.7066 12215.0678 4953.5301 13015.2584 60932.9464 60932.9464 3835.8964 23858.8984 3993.3508 4467.2442 6938.4645 5427.1288 8111.2636 10259.7126 8716.1494 5964.5951 17756.6134 6239.7465 8626.3096 6589.3577 22089.37 6585.7906 3541.5749 1199072.6665 298249513 urec Nitrogen Ammonification NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 33332.3002 65614.8928 18584.73 39438.0001 7501.2051 21333.5211 22450.8759 16487.8896 28761.3985 51065.964 22697.1279 1080176.8006 35415.8125 33967.6474 20123.2522 30145.7061 30145.7061 25403.0525 70441.758 21210.9071 24202.081 24998.057 20154.5515 10847.4061 17033.6791 33809.52 36834.1672 244048.5988 20437.9618 49609.739 14291.912 21083.2867 28764.4429 38170.2326 24750.6503 222543126 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 16083.9502 10505.0208 7559.1666 4404.7807 94957.5964 6567.8442 8793.8309 20657.8007 11466.8189 111166.3485 9044.1381 18615.0971 12944.6936 11817.2586 11817.2586 5103.9591 17445.1302 23610.04 10988.7747 36638.4741 17431.5176 28136.5591 11050.1885 17218.4583 4608.4492 48459.3464 21657.8546 41618.8211 3954.1839 11475.6779 16022.4697 5376.1448 29450.8087 63029785 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 72217.4266 18769.1269 84467.244 25572.2554 93450.3974 34837.7068 27816.5014 64642.3519 63503.919 37949.0068 40360.2198 35841.8886 1235448.7804 29957.7519 63916.9476 45941.8281 35587.6192 35587.6192 26926.1919 61078.9296 25771.6221 43836.282 64651.9272 76072.6211 23060.8479 75169.2598 88734.6562 20216.97 247319.2898 53591.779 53196.9694 31462.043 31889.1405 62505.6018 48568.1356 102351.9759 121610994 pgk Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 4526.2437 13385.6238 4033.3033 20624.4894 4297.8422 5812.1108 79379.617 13994.1014 10714.9015 32308.8044 32308.8044 3557.7591 15821.8995 6360.1314 5355.6579 9793.0119 6240.6067 3398.0892 7071.8173 8155.831 2874.6825 14460.543 8909.8323 16352.907 43658.7116 5599.6162 5311.1167 2579.0772 8338.6612 170700590 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 35751.0297 20171.3138 5975.0935 8593.4215 4648.3108 6374.0447 10678.6306 12127.668 12735.6146 9112.5916 27686.8053 175580.0566 14598.1947 23030.5011 50530.1867 23635.1991 23635.1991 4338.0864 21376.5912 15926.1503 23578.101 19498.6484 8706.6429 12138.9044 12052.3329 12704.7123 10682.0964 31043.9824 10199.6517 26691.5357 6479.0746 15995.6138 12502.3136 11553.0829 19679.6308 71849037 catechol_b Organic Remediation Aromatics Other aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 20302.2905 16916.0405 24738.0917 19459.237 114658.0037 21798.0353 9731.9372 10773.7593 47072.0582 14220.1443 212706.3596 16721.9376 19601.7092 79791.5105 23192.9611 23192.9611 8377.592 30862.0706 20839.2596 12500.7336 22035.1117 29846.7099 9510.0544 18837.2736 43433.4082 13092.0341 45640.7032 82489.7285 28985.4268 11905.0621 17021.0303 20340.4087 9005.0289 20551.8313 209502506 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10177.5165 3893.3305 7081.5284 26253.0482 6106.2512 4173.3244 9957.9707 9095.6286 3475.7737 2772.649 5886.9564 12175.3177 387860836 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. C6 (2012) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12865.8229 6588.3085 11131.72 8871.3406 2795.4738 4002.5171 17712.8152 5627.2055 8489.2804 5641.4864 242215.3609 6351.2172 7183.607 10394.3683 4826.0668 4826.0668 7789.5992 13874.1008 5106.343 11924.2616 7620.9222 6606.364 3319.6034 4540.0838 11557.4025 7366.3187 19942.4218 9186.8605 13639.9536 6551.424 5317.4563 7531.3809 4533.2301 11147.3116 374667633 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 40053.8724 10716.8256 17585.0758 4556.391 8381.3956 12637.9028 5778.0073 9386.6842 19699.16 102374.5437 343775.1595 28669.4119 15104.1994 15536.5702 18897.7611 18897.7611 8540.7556 31512.007 26429.9366 711379.6788 32734.568 16925.3923 8054.9481 19520.8684 76626.0285 8374.1774 32718.7172 23274.6893 24440.5345 7848.5314 14135.0255 18526.8244 11190.2478 13502.0061 83308707 pmoa Carbon Cycling Methane Methane oxidation Methylocapsa acidiphila superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocapsa; 40756.9606 94138.3028 21130.9827 19210.7226 7033.6556 6384.4764 35791.6461 30522.2325 28143.4438 18987.4835 50143.8734 795181.3427 212289.1232 110334.1731 55808.8103 34946.9205 34946.9205 14434.3172 43954.7076 18401.1734 23658.6409 26407.2042 15189.6189 16681.9936 39187.7618 31703.3067 23200.8274 61021.6234 24937.0597 29775.2805 14547.937 36339.7064 39655.389 38701.2116 31591.6265 56709000 norb Nitrogen Denitrification NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 5964.6688 8739.6015 33914.672 80581.6494 9897.9769 4189.043 10317.1648 2355.3596 5685.1565 6111.1314 6198.5691 136619.3036 7306.6889 8185.8883 14209.2272 6108.1014 6108.1014 14785.1649 11036.9288 25239.5984 14702.3762 7188.6676 4688.3698 9269.7529 18999.7955 4374.3045 35363.7355 11001.5436 12136.1571 7041.5989 5702.8666 3794.6448 3913.0718 5728.9955 390613788 badh Organic Remediation Aromatics Other aromatics Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 27858.4673 27840.1782 94409.3316 12394.9363 7019.3977 39784.1446 143436.2561 15714.2093 22506.0527 37419.9656 87876.7013 542322.0289 19958.4731 331047.4956 46588.2875 24761.6795 24761.6795 16042.3544 36676.532 18720.2618 40797.9435 40003.0847 20960.1324 23690.72 19523.2922 25214.082 116600.4637 67650.7035 37321.2568 37746.6799 16898.3878 27186.0757 38463.8456 32475.2245 31543.9713 126710415 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 3618.8699 18722.4523 6110.6568 6697.6578 9025.3349 3018.3612 3976.7655 3679.4114 5653.021 4089.0361 3160.0894 106858.4501 7083.0216 8546.3088 3972.8628 2008.1881 2008.1881 2768.9505 17246.7245 7405.7195 5193.7766 5180.3574 4092.5369 3832.8428 3771.0559 8831.3522 2982.6856 12330.8434 7326.1979 12562.9556 4198.1548 5296.1719 5869.3222 4251.6595 5858.1128 221534631 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 6383.8296 4726.8372 315604238 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 4817.5761 5048.1323 6332.1389 13334.1705 3247.2672 5343.6468 7170.9113 11946.7126 68053.6943 9206.8932 9524.6695 3643.4419 3643.4419 2572.1193 41013.7051 3395.6111 6503.817 3248.7538 3628.9131 7094.252 11192.3296 11754.8738 18520.5039 13068.4665 2863.0864 7543.7278 7231.9162 2295.0045 5216.3552 126730580 badh Organic Remediation Aromatics Other aromatics Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 14685.9774 19187.2916 16088.3118 12828.0789 20207.8399 12659.8891 9813.8044 8190.6485 21803.0078 19965.2137 367629.3013 18976.909 14664.6004 12794.7373 11793.4065 11793.4065 17802.6064 21616.1516 17232.8119 47527.1602 26052.4089 29412.528 10248.644 16483.7669 19657.9073 9426.6685 32180.1929 22090.9828 20860.6339 10037.3934 13553.8706 10501.7949 10119.5942 19582.0492 359787466 ppx Phosphorus Polyphosphate degradation NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 50399.9143 184287.4024 71143.7463 117311.7728 69224.081 18441.6881 25228.3837 55786.5817 93289.2568 25513.5294 33231.0023 1425281.0194 40639.9421 44462.8664 150866.3677 67673.6606 67673.6606 19572.6898 60562.7226 59290.7053 39957.1581 62711.7357 36553.0608 29813.7985 26873.3319 73144.9481 30101.1348 78680.9636 53845.5322 46847.9373 22014.5539 61416.6202 21549.4522 27588.1826 27667.3201 298272808 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7094.3979 5681.922 3110.4881 6449.6761 4358.3793 3419.1722 48191.6976 85296.7892 2756.7115 2756.7115 9854.958 11417.003 4729.2842 9661.4737 3013.0854 2074.0929 6618.5262 6377.1404 2081.412 4479.1876 17013.2771 94471295 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10510.2907 244492.607 7640.0856 2406.9841 10427.9385 9970.9107 16431.0139 7093.1433 239058.6402 3375.6199 4014.1744 7407.3093 10575.7954 10575.7954 2499.6685 9837.6543 3802.3981 5904.9198 7296.5852 5055.6493 14072.4931 17237.8055 6063.8438 3102.4798 5186.9935 5567.0581 2268.5055 14038.4742 146192104 rubisco Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4287.1261 2845.8076 4497.3765 3384.9417 5674.8784 5674.8784 9550.7057 4115.2334 5875.8737 12590.5048 35851.6385 4837.8003 3006.531 22167.0129 3235.5954 119719675 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 13811.043 140042.5728 8032.1888 12499.709 5884.6778 29630.5764 9484.4949 217108.361 11786.3694 14998.1429 5413.5782 5413.5782 4271.922 26910.6604 11541.1101 4504.8297 5521.5727 6002.8167 3992.5829 4323.8104 20145.9425 11893.3428 25292.1818 7221.3438 6796.5538 3936.2996 8582.9949 8996.5976 4339.6928 159180621 fccab Sulfur Sulfide Oxidation NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 41277.2444 12991.2212 15389.5864 32143.2598 35634.6285 44760.2542 26173.4256 26688.3025 32196.2989 34027.8533 28866.7509 967287.423 124535.7853 203304.9113 49174.1618 44630.5136 44630.5136 20976.7611 35348.3232 40517.9694 25878.6505 18242.0712 32277.6536 12318.2479 26759.541 40414.6626 14566.016 82081.228 46712.8952 52527.6604 13517.1002 37103.6083 27531.6938 23559.1526 20943.7506 388466654 arylest Organic Remediation Aromatics Other aromatics Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 5935.0607 6133.7372 10937.7393 2311.4555 7186.3717 5044.276 4785.53 5100.7673 6001.7502 10411.0421 7597.6536 2307.4232 2855.6863 6005.1984 5357.9865 30823.4919 5359.288 3632.0662 5189.884 2101.526 302678239 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 8144.139 5472.245 12660.1416 6839.0971 6390.09805 9815.3709 5743.7162 139500.673 8699.20095 13820.2344 7916.3474 5209.74815 16537.44595 10416.97515 10128.0753 11205.5657 7288.9733 4949.823 7659.6722 11715.9009 5021.2442 23058.73385 14441.67745 14806.30785 5483.31415 7293.32095 10890.0076 11298.4415 8938.02755 295096540 pme Carbon Cycling Carbon degradation Pectin Enterobacter cloacae subsp. cloacae NCTC 9394 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 9607.1377 5886.4892 9366.3662 5310.0242 4799.7629 2255.7861 2409.5214 7813.6585 3210.6767 5456.4761 53186.5892 4373.3491 12918.3994 7566.0953 14951.5754 14951.5754 5481.7064 3383.6334 9895.0805 20105.9021 2316.4407 2904.0557 7468.5842 3717.9403 13461.2973 12250.528 7323.1979 3627.5829 4435.9053 2891.8766 3109.2408 239622908 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. infantis CCUG 52486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 27908.0061 40009.9248 10629.7244 29334.232 61080.435 10734.9807 15417.5246 20770.1179 10794.9303 10878.3406 21476.9956 12903.4546 399225.8371 22523.4642 17749.3736 24588.0375 11715.7967 11715.7967 15436.5542 88493.583 24333.0658 30257.6986 30742.1757 27844.5724 17978.1643 14577.1492 23715.2823 10243.9905 40023.3322 14599.6027 23185.7953 10816.0559 16173.4527 14789.1436 12903.3288 32644.9254 158523550 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 56441.7064 29762.5772 15465.4709 24068.5818 8682.7304 19956.5758 17118.9165 50003.3157 16123.784 11472.9966 19411.701 194945.3318 8187.4097 20514.924 36596.1901 15250.3503 15250.3503 211031.1147 21738.1713 10074.2807 6379.5814 52391.6538 22538.4527 14101.8906 24344.5228 12187.9261 20864.615 44659.3443 33649.1565 5956.4945 18925.6538 30424.9283 7525.993 26845.0528 255300957 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 70422.568 16881.4899 17389.3458 35344.3425 43730.8139 6377.0554 39136.0119 27019.5682 24775.7151 39881.0817 34600.6669 29742.4372 3568889.8304 216823.8808 151526.6285 73249.3228 54381.6402 54381.6402 22664.4871 59551.1473 28681.6428 52334.0701 53168.6196 142902.1393 28361.5428 68365.3438 46822.4154 40063.1004 114059.7328 48041.4298 42373.3343 21933.2348 36214.2818 29581.687 30906.0759 62970.0045 385181840 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14651.9872 900036.4851 13129.0861 84929.3844 16110.8197 15130.49 14719.1868 22734.8375 14456.875 19663.6915 16940.5658 205410.1679 16871.3329 15194.4784 25174.7713 12896.3222 12896.3222 8199.4194 19786.2649 21425.0674 97493.6848 9639.7226 12376.9078 6127.5885 15628.8927 28260.8517 11919.6549 30198.4874 18607.6189 16054.1598 6822.5593 10270.038 17017.7278 7714.9047 14049.7755 170141293 aln Organic Remediation Others NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 4662.6787 5146.5351 3243.0493 3636.6599 4406.7717 4875.561 3094.5109 70817.6569 4443.889 4290.8023 3179.7291 3179.7291 4127.649 7697.7786 6150.1193 5562.1147 7211.879 6019.6272 4108.468 2952.7592 3267.93815 15168.8732 3941.4889 11948.47515 4487.5202 3862.9523 4757.8747 3627.3244 5114.0889 82409761 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 6163.8047 6036.9664 6314.0422 11861.2102 5518.9172 4984.2826 2104.9279 5673.9589 4862.9331 3754.206 593849.4366 5866.0928 7645.6871 5191.2421 5124.2028 5124.2028 3504.732 12141.4866 9023.5815 201778.7386 7168.8992 8596.3442 3144.5572 3305.3209 9774.8882 3066.2915 17192.2766 5697.1754 8780.5112 4319.808 5090.2615 3855.0358 3746.9323 8500.0285 227350932 catb Organic Remediation Aromatics BTEX and related aromatics Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 6517.2855 4356.0529 3350.0689 8096.7001 4221.3424 12224.3856 21079.3751 126902.9195 4259.2059 5141.9269 4790.0212 3247.7628 3247.7628 3698.0162 15523.5833 7774.9926 5164.1931 16156.217 5575.4696 6769.7753 14479.4687 14606.6571 14485.176 5644.6897 12843.4607 4209.7845 10892.4289 5126.181 3581.5415 5440.0717 374704816 FBPase Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9020.9813 38673.8489 267635.2358 5776.5143 24251.5078 3437.8735 3678.9306 6312.2367 5943.4178 7349.7132 5919.8609 112673.0822 7176.7183 6519.5599 8030.3414 6591.3797 6591.3797 5768.8814 11973.0614 7169.0964 8310.7144 9932.4373 6738.2442 3337.3022 6582.6975 10388.9934 6662.3985 12226.2704 10365.1971 10772.0204 3040.4569 5454.2117 7350.2974 3722.3441 17888.8813 373951903 arsc Metal Homeostasis Arsenic Detoxification Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 19025.8184 10619.8884 9537.2039 5640.7683 8151.5804 5977.9415 7205.2155 46519.1414 10903.8695 127918.5547 18668.6814 37658.9442 7397.6222 7443.2155 7443.2155 5935.0157 36705.8772 7865.6482 6454.8037 13074.5364 17837.5924 8670.6432 10871.3659 6889.0655 8960.2466 430773.5184 7719.9723 15058.3119 6039.984 27276.822 9687.5277 99938.4585 12049.9416 295835843 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5880.4822 6848.4353 82697.463 2852.9152 2852.9152 6794.7434 6258.1536 372266348 alginase Carbon Cycling Carbon degradation Alginate Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 24785.7202 12993.1232 51186.9013 61579.9942 16542.9507 18650.7416 22074.8216 13910.542 22647.429 35289.0679 23650.3987 1132911.5608 37810.3974 54394.3583 202486.2961 16136.901 16136.901 18650.2381 92565.4218 42733.0613 281167.697 35010.534 39953.8521 13699.3795 73221.7725 42415.2196 18991.6083 56404.7567 38195.2137 153453.173 19383.4727 68090.1816 82770.6847 17920.572 41864.9623 145218831 fccab Sulfur Sulfide Oxidation NA Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 14907.1488 3680.2337 2836.7001 4482.0403 4136.5275 69716.1043 7798.1333 4815.041 2265.1977 2265.1977 6147.7656 8517.4969 2739.0481 7374.4608 8457.9764 6697.4101 2042.5932 2656.2235 3264.2991 5872.5021 335424084 rubisco Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 24593.3988 53176.5877 3945.7082 230569.4317 132523.2146 23879.6874 10442.7764 14824.4787 18576.5057 10196.2333 513168.4062 11586.2885 58302.2021 9698.5994 8324.0855 8324.0855 15127.5593 13167.9109 9127.6048 6610.9657 10490.8297 19860.5548 9356.0715 18183.6187 10546.8903 5896.4979 26910.6108 10122.0774 9809.6626 3829.1013 7696.0816 8278.4228 13082.3281 11435.883 290572556 amyA Carbon Cycling Carbon degradation Starch Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7463.5972 14202.7194 9886.4446 2476.0875 7826.9107 10066.0643 6222.327 5823.735 3607.5264 89851.1604 6861.1483 6759.1134 5682.5371 2415.961 2415.961 6293.4441 11431.2575 13125.4848 6251.155 6541.9776 9957.5436 4287.1396 8042.8889 17109.3677 4340.0124 16777.6432 29719.6772 14420.1987 3756.6616 5670.6141 6537.6914 4352.4392 7721.8948 119391669 narg Nitrogen Denitrification NA Aquimonas sp. D9-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Aquimonas; 4442.1681 12740.8734 3527.3192 9996.6912 5267.6968 127769.8729 4643.4657 3144.3356 3144.3356 3449.1417 8665.8042 6408.1041 6561.5639 6493.8801 7426.6604 3291.0909 16348.5695 6175.843 6180.7207 11871.0702 13173.4443 3689.9036 16826.2531 99030579 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 28234.2088 313620.9242 152557.239 8798.79 7885.8059 3617.8614 153484.3374 9844.2988 5877.5339 19607.8915 19607.8915 7361.7399 20322.4228 4574.9893 5530.3552 19640.8176 8784.8199 70694.0077 20291.5005 116335.0806 122969.4596 20790.9089 98512.7391 15923.5276 3149.3317 3800.8883 3520.5565 104332.7031 12556.647 158314711 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9487.8407 5274.651 6188.9853 2635.0656 8525.7491 5288.6754 5743.0692 51617.001 222623.4774 6248.7806 7587.2129 4344.9343 4212.0162 4212.0162 4275.8477 19725.4658 14250.4228 5224.1871 39199.112 22703.9966 11210.0391 9493.7606 16950.4755 5368.8059 59836.6728 10937.7967 13355.6916 4171.7154 8926.3796 6620.7454 4254.9969 356697066 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 13576.1386 11265.5244 8131.3969 8034.6803 12510.9278 3565.7938 8670.8477 6840.9348 3664.0454 9638.3452 122090.7786 4823.7872 21256.0971 7643.6155 7474.0126 7474.0126 5189.886 10324.7063 3931.0766 7078.2158 6711.3524 5022.0564 7068.3937 9201.4968 3559.9396 10835.064 3903.1285 8952.7843 1791.6862 5806.632 9079.1521 35338.5569 8013.2398 148499934 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 17096.493 9307.0839 19623.4129 17914.7466 10664.8516 4362.5298 40873.3741 30455.2339 14467.8034 71398.1328 18711.3811 476173.8644 33890.2308 39839.5496 16681.1539 31071.9814 31071.9814 11768.0149 47004.4219 29357.0029 11646.9313 102905.0382 9363.6304 55370.7671 52116.5249 22406.0982 15918.5166 37331.9214 18047.6324 17226.8681 11761.718 31541.1347 24708.4593 16136.9262 14605.2623 270344093 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 9580.9375 32911.7277 15908.9902 7541.6299 3781.9006 10173.0764 3022.1123 3022.1123 6990.6898 5007.3558 4796.3257 4274.4959 3005.3614 10304.9239 5878.6068 5019.3918 364561952 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 5345.0103 2795.448 304281791 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Arthrospira platensis AGB-AP02 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 7017.1749 5332.3004 6153.0664 6085.2029 5995.6644 2735.7404 3424.2763 9280.2615 3864.1056 325653.8625 6106.1607 8196.91 8093.7113 6860.236 6860.236 4126.9111 8714.6311 5540.6826 9839.848 6921.0084 5506.8259 4804.5202 6084.0743 9473.0787 21106.798 3735.9397 8609.8924 5284.958 6372.9253 5079.8515 2758.9746 5744.2855 383794999 linc Organic Remediation Pesticides related compound NA Fervidicoccus fontis Kam940 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Fervidicoccales;family:Fervidicoccaceae;genus:Fervidicoccus;species:Fervidicoccus fontis; 13306.4092 8245.9361 11458.3606 9690.8116 9246.4077 6977.0696 5980.5687 10190.6219 21356.2268 5066.6532 247427.4919 12069.2909 10874.7256 14137.0677 7128.5696 7128.5696 9121.0563 15231.2168 12168.1034 12535.456 13524.0628 18595.7696 7853.1896 6056.0875 14618.7533 5017.5672 21471.8469 7232.5876 15016.2653 5747.9109 6169.2606 9095.4279 5443.1944 16379.4916 374607979 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5856.4339 5747.2271 5188.1984 3112.9446 3738.319 4967.3606 2467.6565 89502.5466 4243.7127 23931.6651 2361.7551 2361.7551 3227.4041 10453.4535 7886.2318 10684.9883 7835.603 5084.8172 3663.9682 5859.2193 9086.7388 5528.8829 19022.1662 12897.9764 8733.2993 4391.3557 10525.438 3499.3612 4072.7389 6706.5264 377528848 poba Organic Remediation Aromatics Aromatic carboxylic acid Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 14072.0644 15905.5739 13539.273 24179.9817 35155.579 86425.491 16754.9265 6802.4903 16237.1724 17461.2023 9573.4538 175581.9052 16341.6595 28197.459 114476.5691 29401.9214 29401.9214 38237.6829 17396.7747 15133.668 12974.1174 17649.335 18206.931 29697.2177 7948.8552 16202.3781 15223.811 26571.41 22728.4735 18592.7344 7769.4407 16469.7082 24278.1671 5833.9856 34607.3081 337759737 SoxC Sulfur Sulfur Oxidation NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8719.1925 10925.7604 1716.2803 26361.2743 1984.7446 4248.4473 8376.0065 4270.5632 79063.4818 5329.336 5721.5894 3930.0776 2012.7514 2012.7514 3397.3007 7784.1635 4599.9524 5464.6919 6735.4609 3643.1345 2701.3392 5815.6701 3821.3062 12317.8588 19025.4285 6407.989 2718.4984 6212.1679 4163.2121 2918.2165 13659.0253 332372369 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11918.6722 7536.0977 15321.1959 8996.4376 8890.007 8435.3247 8177.3367 13813.6496 8101.973 227302.4691 16175.1843 10700.3042 34337.9609 13009.5926 13009.5926 9792.2099 18232.6487 20611.8226 10005.8816 13631.0559 23871.4817 16680.9822 13472.8799 15534.8793 6088.8967 39445.6577 9882.1669 12960.6636 7857.6189 8934.7791 9848.8782 13115.6061 702687.1045 336007235 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4602.5876 3986.5261 2415.8038 3666.6039 3838.6336 4123.2086 4219.6262 6320.1505 4146.8528 5130.5182 7145.9605 4606.9317 18498.6202 22646.6622 6719.0733 6088.2219 8811.3535 4671.2069 3664.5216 3051.5582 70991419 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5199.7075 5467.6372 50121937 amyA Carbon Cycling Carbon degradation Starch Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 17278.9021 13095.2473 16331.3474 13850.7118 12721.1755 11117.1653 10396.1921 18486.3913 24461.5009 12428.7485 282062.3458 21916.9282 23254.2409 11283.308 10584.4072 10584.4072 14339.3456 28499.3791 24635.1835 17345.0448 26450.8552 27462.4212 10356.3325 10899.4494 168125.0066 11148.6856 52440.694 26485.2005 29169.4097 10712.8 17624.4556 16572.9168 15115.2123 28233.4046 148242368 Sir Sulfur sulfite reduction NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 24196.3157 19683.1487 2695.4014 8536.1909 3913.6452 146408.4628 4556.4558 14352.4544 13406.4461 4396.4848 4396.4848 2655.355 6823.8389 5340.1494 15514.8695 4109.6146 3737.8339 7754.9963 4887.7373 9732.2505 16873.3177 9324.2693 2008.6241 4215.6084 7428.4633 3500.6039 5233.1517 333116788 beta_agarase Carbon Cycling Carbon degradation Agar Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 18345.2046 31597.6232 5943.4047 18479.2353 11860.4612 33583.1702 6576.8643 9709.61 12583.5393 12650.705 19893.653 179135.5805 12597.9313 13043.0507 25861.4826 12743.9016 12743.9016 15925.4438 192800.8409 7718.8211 24958.2865 28002.9857 14600.7058 8787.8011 17423.3195 21835.6405 15226.4994 113553.9611 22353.7181 17714.2377 8118.3359 13502.0569 12117.3128 9685.7709 50147.8985 148474738 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3767.5097 27903.2567 21761.2752 15391.9166 10929.9387 4929.5044 19952.66 9897.0046 8442.2854 4539.881 5304.0963 2419.1472 11851.4975 10306.9045 6616.0953 4488.2757 8260.2317 7774.7696 85672433 nifh Nitrogen Nitrogen fixation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 82807.0139 17238.8018 68834.0106 49390.3569 29897.8281 17909.3777 43307.4819 34437.1605 383566.8349 40795.0599 57691.3985 82624.8865 410539.8275 46215.631 27749.0468 47668.6262 33157.9172 33157.9172 33565.4157 69432.0383 63792.2248 53947.2945 77768.2548 193469.8984 33220.763 55683.5223 46294.2756 44181.2609 327485.7869 54993.9697 67881.768 28037.3787 45070.0808 48729.2546 32854.5842 135536.6159 254675538 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. A3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4318.432 6735.7877 12697.6842 2805.2784 3550.0393 2986.1069 9274.2173 9287.8053 3979.9009 8327.393 3452.6528 8031.2582 2531.1044 14720.2392 5708.2246 6654.5646 5796.4801 4709.8789 146424725 beta_agarase Carbon Cycling Carbon degradation Agar Vibrio sp. PO-303 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4123.7024 4056.7124 2383.8744 3281.7118 4340.8611 94566.0774 3701.533 4293.7243 2803.4573 7557.3264 5742.2358 6157.5714 5793.6718 6085.0177 2567.0212 2313.0511 6303.8226 2713.1287 10976.0836 3548.8695 8667.6678 2322.0705 3673.3916 3524.1558 1989.6887 7074.8392 55845965 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 8640.4715 6276.3063 5269.3708 12496.8136 6161.1773 95824.6923 48471.628 5294.4342 6039.7834 34371.5002 34371.5002 3149.7021 8353.0625 5290.1144 5629.8589 10443.1879 8362.2878 4825.0678 7493.4076 7882.2351 5310.8188 23863.3199 8601.7504 12257.2536 12453.0807 6143.3211 14179.1914 8742.58 8578.7971 299142573 amyA Carbon Cycling Carbon degradation Starch Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 8601.2376 18546.4195 1998.0931 3376.1416 5339.4993 4430.5223 6527.5561 5364.7278 80498.6769 5335.9057 6288.2505 4851.22 4851.22 4193.6686 6050.4702 4613.8047 4386.0406 3494.4897 5303.4402 13089.0303 3485.3564 15588.8437 6057.9943 9201.9804 1879.7803 4140.9304 5833.1715 9325.0429 9718.3322 114539427 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 32218.4746 11555.935 48387.3327 7089.7089 4619.0114 15970.6908 15321.9182 7426.8894 17094.017 25591.431 9023.9243 419341.1274 21525.4397 62607.4857 19551.1283 10419.6941 10419.6941 12688.9388 43086.0322 14380.8174 16821.2681 20476.2373 39592.6188 9906.7227 24796.7009 19268.5135 14400.9065 69334.3721 14727.149 23702.1058 23447.8309 12590.9281 17850.283 13419.3737 29817.4383 159881214 nosz Nitrogen Denitrification NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 6769.6124 6540.0375 10550.2679 4068.4281 3196.2239 2907.2683 5925.2058 6264.0853 3095.4526 174373.4144 6934.4081 6325.3552 3123.5467 3123.5467 4996.8152 13451.7522 6547.8087 5682.5677 8238.0764 8399.4077 3758.1814 4990.8787 11119.9847 3192.8855 16317.8761 4146.8892 10927.722 2531.4825 4989.1301 5585.626 3306.7897 9205.8392 359734844 dehh Organic Remediation Chlorinated solvents NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 24881.6585 16455.0127 22268.5904 16173.534 17443.312 59597.7972 86028.0763 8400.7565 15519.8838 36184.1235 73609.4786 363199.1699 48960.5806 43233.6904 37218.9552 81543.9674 81543.9674 11007.5373 147885.682 18744.2133 95117.1502 61725.1626 36081.6209 29622.452 29522.8986 39103.7835 75007.5945 57162.6624 61927.8921 84264.1494 21692.6695 108852.5845 71715.117 29572.5775 32634.6469 364577252 cysJ Sulfur Reduction NA Cardiobacterium valvarum F0432 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 8795.5448 18067.5686 8113.396 18561.8819 21926.8779 7012.0936 10172.6423 3990.2743 5851.2244 8190.631 13534.3964 171477.6373 6158.6331 7171.9508 11499.1219 5455.0658 5455.0658 4549.094 11615.267 6784.9849 133312 7261.2784 7698.3689 3436.7726 4846.3103 11926.7505 4040.7217 27799.2571 17509.9439 112510.2012 5448.9257 6760.4913 8596.5556 3931.745 18443.9297 119391523 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16536.8229 16096.7521 12701.0467 5470.2353 13748.1486 21144.4198 11463.5727 13016.9584 6601.8729 219623.3074 27971.3592 10898.1423 10461.7207 34393.0275 34393.0275 33894.0543 22693.2075 13561.1562 33507.0849 81625.6418 19454.8073 18911.5256 10832.4757 16320.6627 14796.6102 19989.3038 9861.4747 17552.6304 8458.6498 10583.652 8401.323 7172.8814 15731.2129 284016799 rgl Carbon Cycling Carbon degradation Pectin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 12473.7105 5859.8241 13115.525 12687.153 7574.3646 5801.5981 29448.4286 18013.8056 16078.3635 16299.5106 153262.4776 14685.8229 10765.4093 21304.1766 10653.2439 10653.2439 9288.3211 19084.7099 13595.9936 20711.3798 15372.7399 9948.5811 6544.1594 10387.6729 16650.5785 7452.9803 56522.9803 13336.8155 15369.8019 4718.8373 17369.9629 8189.7552 10036.6807 17459.8377 390573624 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 11603.7047 8543.9837 5740.028 7732.1594 5171.7968 13229.4093 7969.2083 7276.5441 11737.5673 572292.8348 13694.0814 8734.6942 15252.0526 10607.2934 10607.2934 11555.305 20398.4544 12660.5405 7493.3905 16603.0715 8886.5721 5382.4503 19409.2744 29983.8658 8399.1704 37820.6118 8190.4075 11344.112 12384.8576 65891.5467 10664.4838 8121.7742 8823.7743 313105078 dsra Sulfur sulfite reduction NA uncultured prokaryote 23486.7801 12872.4179 17322.58 18598.7907 15192.8402 15055.4071 10192.4782 18533.1325 24806.5147 12369.1714 571212.4326 20779.9679 15702.3098 10159.4328 14889.1606 14889.1606 15748.978 48002.9509 11952.1834 39502.3573 22773.845 32661.8998 11737.1048 17459.0621 22280.1206 21812.5679 38932.4079 14286.0303 42752.4664 35303.9692 24081.4406 13301.4081 14543.0132 37960.5438 74053701 one_ring_12diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. 1XXyl1b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 28178.5614 1933815.5526 11926.3326 88682.1433 10570.1746 64234.0908 23420.3844 38717.9531 20413.8958 60394.3939 26369.7506 379804.1638 26570.259 27693.8155 61152.3495 34045.1038 34045.1038 22662.6058 68009.9985 55125.4634 32528.1497 52324.9665 15732.2975 30443.0701 78291.3214 23817.0668 28299.6513 49222.2929 31036.533 32604.1309 34140.5015 49902.5013 36722.3989 40581.5072 35334.7168 297565147 xyla Carbon Cycling Carbon degradation Hemicellulose Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 224981.1539 39838.854 1793963.7495 50829.9998 24519.131 105349.4587 457237.1906 48512.5902 117853.3417 123894.9608 89711.6132 1442185.9214 150057.4612 64100.637 224415.1511 102870.3153 102870.3153 56655.0727 95919.0115 78723.8492 302383.3367 81936.1023 47763.413 119322.9578 68837.276 831423.6024 186632.3412 155573.4263 278900.5244 96966.7688 40012.2869 38026.1749 62433.693 359197.5518 246780.6734 210159723 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 28976.9014 6149.7751 15388.9865 27325.2406 8314.689 19550.113 8549.3194 8441.9249 39983.7253 9690.5265 7422.3852 354878.8628 17305.3528 18364.5345 9085.7784 9710.8963 9710.8963 23328.2113 23294.3271 14122.1176 7254.5097 13412.6646 8945.4246 5423.0866 7973.574 24108.9552 5801.7206 69482.5766 21128.4382 25915.0466 10857.7689 10253.2041 282871.1812 78874.8438 17878.659 407801768 alkk Organic Remediation Others NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 26358.8106 12476.3797 10835.7176 9960.8374 12922.0953 11772.1484 14634.4885 26134.8529 10979.0483 40694.0874 258488.5153 12076.5837 28944.4906 23497.4656 13991.7745 13991.7745 6958.3365 18154.2785 8571.4875 6837.1918 21699.5244 7819.7108 20322.3082 25372.7172 25561.9413 14645.0256 39434.6448 23602.9956 24994.446 7621.1914 15750.1359 66881.8455 15215.1565 29615.2834 292485874 nirk Nitrogen Denitrification NA Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 43795.0672 25221.9354 44890.22 9782.9919 11408.0114 37103.2671 5908.4964 35534.4868 159315.6386 11467.2994 14536.0737 10625.7439 321599.4556 15967.131 20513.8649 6600.0365 17716.7099 17716.7099 9134.4032 17374.1071 10285.4742 21901.6368 43645.9627 9703.7903 12671.831 27740.2738 11263.3788 21934.8972 39146.1302 7343.1648 16920.2433 6350.0327 9575.5853 20623.1932 9536.091 34046.4056 349780212 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 143384.3455 23197.2792 15971.5366 7138.2102 6638.4928 27798.5493 13244.2492 17605.8605 23094.28 22902.4895 43427.0343 344321.9858 16237.8376 28708.2404 81372.8119 52956.515 52956.515 19540.9522 44454.0039 24752.1733 54279.5631 40572.4492 39424.5085 100840.0811 20023.1922 14947.4008 47660.3932 22135.1604 23005.1111 30109.8958 32857.0625 41799.1032 54694.3999 66182.5116 50978.9341 326952896 pcpb Organic Remediation Herbicides related compound NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 21126.5031 22841.5238 12224.6622 20140.9242 18709.2566 10973.5554 8434.5966 12543.7006 18960.1787 13183.0945 29728.404 418976.9335 38131.2853 16881.9814 40505.5981 26946.7869 26946.7869 13494.8362 18474.3913 121801.9328 8812.647 27882.2147 147241.9024 66498.3182 26244.4465 25296.4592 17559.0919 135265.5937 19095.2553 23525.0499 11980.7545 23662.9366 42501.1168 24836.4261 44691.532 375145955 xylanase Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 10359.1526 444017.6002 16241.1217 36039.0025 61226.5909 5115.072 20394.817 13566.9387 14000.2151 21709.5215 14307.432 576537.5115 23495.7846 29698.0289 49918.4557 36354.1745 36354.1745 10900.9147 23470.2243 26610.6505 116082.984 28752.6785 13212.8781 7560.483 13661.7271 19613.5592 7997.9513 23999.8502 19804.1438 43841.9686 12175.5984 10127.9516 10332.5588 5442.7558 10765.9397 99083257 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4301.4363 5143.6703 308746696 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 11754.6488 53195.6765 8412.3238 3550.6437 8518.6582 10142.5451 4875.1427 9358.3161 15932.5955 82002.7803 13401.6632 11423.9336 22881.7769 5458.542 5458.542 5840.5521 12677.4406 5335.9414 6016.445 11094.6529 5443.7944 6635.4644 11359.4464 9961.5139 14189.3694 13542.2138 11381.205 17439.73 7961.4927 17235.922 15887.1971 6638.3669 372459774 nirb Nitrogen Assimilatory N reduction NA Brevibacillus laterosporus GI-9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 11387.6173 9374.3831 6647.8822 10583.7551 16182.2215 7927.3774 5149.122 9049.5449 10496.7739 5760.1483 221110.046 15431.9316 10076.864 4755.6007 4474.9634 4474.9634 7992.1262 20027.8787 12266.1226 15350.2594 12647.7245 21856.7297 5631.6214 6937.8216 10913.9134 5392.6805 31035.8944 5449.385 14867.3351 6717.2516 7275.5317 8397.9418 7259.4395 21462.0477 111149272 amyA Carbon Cycling Carbon degradation Starch Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 4745.0643 7371.5779 5856.1319 11420.2913 3632.9023 3502.4974 3502.4974 3644.0413 6171.019 3501.5471 44386.3399 8699.0915 5716.8598 9605.2213 13839.6389 6057.0927 5578.1212 12841.0928 4363.6229 2130.179 6237.674 313117089 chitinase Carbon Cycling Carbon degradation Chitin Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 34588.8927 5175.9 2947.4004 7670.2521 3868.1914 9130.5248 5693.0631 3618.9666 87613.9543 12562.64 14017.2349 8952.7581 6331.5996 6331.5996 4092.5355 17251.8587 10340.9896 15854.213 8864.4512 16371.6328 3767.7159 3229.9885 7209.9247 4070.838 14097.2174 8915.4888 8221.2505 3474.3379 4611.9789 9097.8271 26029.3883 7725.8413 345862488 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 16781.4281 13187.7522 19356.5321 20031.7163 15503.5162 11217.6607 12121.7331 10330.9996 16199.0261 48015.1622 9925.9742 349350.5809 24072.9144 19836.3888 10552.9605 15013.2885 15013.2885 13480.2291 26814.3318 16338.1893 14799.2467 22852.1576 22313.9034 9966.0727 7213.2988 28834.9429 12054.3346 43795.9859 21477.7513 25012.451 12610.376 14290.4583 8862.9839 10482.3772 24516.1634 29652508 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7227.1674 35879.0107 4754.9714 4144.1271 10001.7652 6363.3512 4209.7692 18481.6958 11372.1997 301744.9178 8731.293 116013.5516 6490.6791 8323.6784 8323.6784 3208.3565 17367.1886 9404.5711 12874.2222 18492.4506 7469.6498 6518.3575 10564.2765 15054.6482 7154.3444 21146.38 8914.6012 10069.143 10053.7222 8819.6158 16911.195 12540.7115 12918.6588 384092309 vgb Virulence Antibiotic resistance Degradation Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4613.5095 11232.8705 3775.0815 4008.6472 49737.5248 49737.5248 8194.8905 6080.4886 4002.5881 6612.3723 2073.6594 8126.893 5040.337 354560558 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 16847.7694 6515.1395 4144.4724 2550.6286 2550.6286 3669.1073 7702.7774 3750.7708 3599.4301 4086.4279 10398.5785 1941.0738 4191.4179 4332.562 46520033 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 97915.0304 73286.4716 16538.1078 10938.2856 10312.2011 8094.5364 5518.1643 20488.3514 8992.0943 54275.2743 5287.0619 116632.8999 8144.6412 7289.1248 6052.9826 74699.4702 74699.4702 8507.1603 25856.702 12142.3278 111757.6937 20010.6997 17253.2412 17702.7854 6348.4925 12885.5124 6542.4054 20947.0686 39946.0411 16062.1852 8459.554 19001.6623 12476.5424 7367.1808 13849.3092 365898087 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11431.755 8285.1395 7117.5258 14377.5519 7021.8567 3533.103 5715.1402 2605.5275 5298.3778 9665.6973 15285.9629 113168.721 10175.1549 9083.582 11955.3898 7244.8132 7244.8132 6292.0983 9913.1095 7978.8674 10362.4202 90879.4615 10452.6161 7977.8905 7828.5813 12116.2471 9803.7959 14410.1978 25747.2652 18702.4756 5198.6558 8212.0264 7327.049 5923.2649 9371.804 113431894 rubisco Carbon Cycling Carbon fixation Calvin cycle bacteria endosymbiont of Lucinoma aff. kazani superkingdom:Bacteria; 22695.9523 26009.7243 17104.2771 83389.3081 28622.5716 14294.4695 16845.3046 4835.6181 16657.2528 17775.6787 13167.7294 2682421.4771 18588.4999 29238.2139 45454.7607 26532.4528 26532.4528 8704.4778 49196.4299 20988.7637 13352.8189 12469.7456 80871.0642 7743.4863 15048.0594 29079.5321 18715.4411 39551.1186 24065.2959 32904.8478 13353.6913 16175.7266 17439.9699 14356.8443 6916.6507 219111475 actin_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 6405.5478 924160.7359 2879.0886 9577.7326 4507.8275 2287.1155 20089.6867 3414.2521 171185787 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 7723.5596 3892.5875 4187.0882 5110.3702 4919.6724 5114.064 6851.1442 6175.5048 109998.9556 7351.4407 5314.0318 6465.971 4305.8908 4305.8908 7124.5373 15613.9018 8769.5556 8731 12132.1683 11024.9354 3619.4564 4064.2255 9645.6389 3029.6916 15928.4797 5993.2652 11749.5863 3141.2311 7177.9429 6217.3156 3644.9378 8219.4445 93353131 arsm Metal Homeostasis Arsenic Detoxification Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 146126.9127 20362.3827 32315.1966 7773.0113 26052.0241 21056.3769 74938.4592 25714.9991 32828.5763 22867.4427 24022.7109 38751.8167 485963.9134 28584.7885 64833.9985 22457.682 39666.64 39666.64 25177.4027 60947.9804 30321.4547 29367.1455 74428.3811 50625.6039 27355.371 28319.5892 31498.6969 44443.4063 118482.9144 26653.2485 43033.2366 16209.462 24253.7821 39480.8677 153224.3317 32570.1264 364570035 tehb Metal Homeostasis Tellurium Detoxification Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 6002.4118 4047.9667 8079.6991 8129.3728 5201.423 10325.2578 3282.1358 4610.1876 5614.8023 152321.9503 13520.5874 6872.0345 7916.4134 12818.913 12818.913 2843.6353 14722.177 4879.9231 4583.0291 10338.5668 3920.5453 4942.3 8675.817 3091.9043 17686.2677 7110.2398 9243.414 3758.3893 6318.1166 3344.8555 2990.4087 111150767 camdcab Carbon Cycling Carbon degradation Camphor Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 16296.5887 63332.9966 16593.0228 30773.1137 232973.6273 62059.4994 8449.0779 52690.5427 32696.9919 37213.9564 26964.8338 21118.6047 760092.5041 65853.3719 65926.6897 118740.3089 44073.1582 44073.1582 49271.7274 68463.988 44826.5806 17077.9384 51498.7578 10491.4284 10838.7646 34056.8891 91853.0115 22885.9939 606184.265 47593.6683 113842.6856 25066.0706 44097.2913 61448.0471 11323.502 22169.1522 118581663 amyA Carbon Cycling Carbon degradation Starch Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 11528.47 10050.1315 12841.6664 17500.9907 10430.075 7052.8598 64386.5878 4705.9915 10341.1971 11042.3023 4671.378 207602.4157 13955.2612 15188.6906 11463.2077 7677.5172 7677.5172 8448.2649 18040.2025 20353.3745 9773.6089 12495.0649 15229.5296 5973.8058 6813.9412 25413.3576 54787.4704 26338.9895 18785.2442 19001.8802 10820.5379 8783.2166 9069.0493 73791.1736 25442.6989 385763854 dsrB Sulfur sulfite reduction NA uncultured bacterium ws085G8 superkingdom:Bacteria; 1039545.8833 10984.2759 261109.0756 363820.549 184411.1766 166378.4896 110328.9469 310125.2814 183397.0946 340240.7959 492928.2813 321440.8731 15354128.1438 277181.5177 314325.9272 273629.4928 286682.7558 286682.7558 145952.1374 222996.8576 211057.1642 326024.4627 529260.0901 217309.6403 195318.8237 209253.2389 156074.345 228133.9224 862025.7237 210228.7634 383258.121 112567.9173 275930.5994 400204.5895 149128.5908 635456.4408 182633340 dehh109 Organic Remediation Chlorinated solvents NA Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 5589.7348 2462.9621 2022.1832 6357.6661 4984.3592 4984.3592 6243.4708 3133.4744 3874.8932 4449.5458 7521.8669 2189.9619 7596.7862 3844.5088 3333.8221 16313.3997 381382550 chitinase Carbon Cycling Carbon degradation Chitin Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 17099.5071 15191.8635 10637.5932 4476.5258 10084.4386 11457.1988 14553.5076 7062.3613 14081.553 9161.4837 144110.7168 15179.4707 13157.7691 145886.7761 9739.8491 9739.8491 6678.3004 31721.1419 13171.1587 20995.8066 10455.7838 13250.7793 6524.1362 12706.7287 18079.58 17886.0434 34131.0049 18446.6993 17208.209 21225.6878 24655.1656 14016.9028 12348.6154 18014.7626 284504810 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium funiculosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 31413.9509 9633.7836 9217.3742 44947.4421 26141.4266 15076.2526 19512.1532 3893.3972 18928.4982 19234.0373 20277.1435 968111.9897 30383.5405 27884.142 63728.8539 22511.6118 22511.6118 12284.1345 29153.3055 24906.677 29517.0127 36189.0809 12880.745 10531.6713 17724.1617 58103.628 13071.128 150029.2355 36476.9232 61052.1145 18893.1482 20317.9001 53756.9467 9020.2887 13212.0969 354960250 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8650.1522 7284.7363 4625.3732 13671.0277 2538.0709 114016.9335 7182.9551 13417.0184 4827.3812 3591.8629 3591.8629 137146.5217 4524.6099 6037.8821 4796.7351 17622.4461 2723.7088 3600.373 7428.7098 2810.3133 11523.0956 4277.5939 5763.1746 1899.5363 4716.2262 5967.7907 5645.0797 8764.9832 90426095 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 28894.3669 12601.8664 19881.2904 27060.4794 23884.7279 7231.0226 20244.9636 12908.6744 13865.5858 19243.5349 22375.537 10798.1779 479381.812 31758.1063 22617.5933 14450.6258 15870.3026 15870.3026 16915.0634 30160.4177 19523.1955 23684.2215 24370.6691 39278.773 15479.1157 10548.5824 29077.5272 11137.7664 13652.6368 13697.8845 26067.5694 12011.6049 13609.9875 15405.6451 10067.1975 37229.9971 187975928 ara Carbon Cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7827.5318 12818.6164 62631.6544 5295.0249 11297.4342 22156.6522 7788.9303 10101.6512 11413.7813 7289.6754 248154.01 12735.1231 12374.495 8887.0602 7837.3543 7837.3543 6795.1582 25056.9729 14731.3736 14037.0589 156250.0717 11899.731 5661.9489 7101.8566 22460.5961 37545.4102 25049.8756 18725.6395 23801.6235 8235.142 13862.3233 22793.2305 6502.4201 11517.1109 403661583 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 9931.4966 5016.7439 3949.0636 55225.4574 5590.2734 82232.1156 28165.3916 87879.1577 8489.226 8198.6057 11813.8286 11813.8286 13757.7307 7446.6029 13410.0844 6675.002 2799.2735 4966.8465 23152.3836 17727.4153 18421.2775 7295.5984 7254.6411 3254.5652 4730.7749 6718.3196 5567.8405 259348438 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 13188.8875 35243.5845 5046.5569 5471.2699 12132.5339 3503.8433 6027.9429 5100.2197 3698.4858 99376.2104 9238.4366 5858.1783 7613.0075 4486.7689 4486.7689 4768.3896 10636.6654 9786.5442 8157.4252 8159.6705 14568.807 2375.6087 5945.3262 8747.9605 3759.5289 15965.8923 8523.1122 13053.6426 4456.6467 5614.2662 6880.0337 4316.3569 8355.9663 83369490 amyA Carbon Cycling Carbon degradation Starch Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 19432.343 458829.0798 15105.1999 7700.6498 7405.5987 12993.4954 12403.0423 19564.1138 45480.1369 19369.9265 1213325.8481 26933.7031 20807.5781 77115.1652 23207.618 23207.618 11076.0773 26149.267 19127.4378 21212.0329 46262.7489 15155.5278 19409.1463 22317.2265 70227.8172 42523.018 51202.7874 284670.2459 137729.8017 115723.5444 26094.2533 26399.3455 9426.1434 45023.8981 70930952 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 23768.4368 23429.0419 15907.5549 57486.3432 10231.0408 5817.5551 28006.7013 27056.9814 13100.5303 10818.9124 41292.5947 18787.6733 327510.947 23196.4012 26546.4537 11777.9416 11257.3093 11257.3093 9723.2207 17787.5724 20890.5879 18037.5882 95768.9582 33178.7666 7601.8978 10762.2742 23276.6476 17246.1004 41496.4588 31292.9038 46833.7723 20767.8515 13394.0353 51837.8946 9503.2225 61310.8707 85704597 dmdA Sulfur DMSP degradation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 12520.0037 11087.2348 14704.6753 17013.7034 2450.4379 3348.7378 11471.7632 7031.0287 137244.8697 3915.0661 4994.7157 4273.8705 6670.0835 6670.0835 2752.3519 8508.9158 4739.5124 16886.1474 6569.4641 2599.9627 2638.0736 6508.4904 3177.2209 10462.1567 6824.4949 1744.8875 5179.7936 4638.7882 2290.3545 340555734 ppx Phosphorus Polyphosphate degradation NA Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 10139.5475 5140.9324 2824.4991 6298.1841 4541.4327 78974.375 3546.4009 6088.4532 5033.1454 4284.6106 6744.9793 4763.2238 3414.1392 1651.782 2252.0173 5250.3809 223937220 endoglucanase Carbon Cycling Carbon degradation Cellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 14461.4312 8573.3426 7246.0379 10137.3159 32761.2432 25298.2368 7063.732 56705.0371 13697.2743 9038.6815 6188.7586 183003.8854 17754.2429 16529.4514 11441.7278 8194.1225 8194.1225 4710.6645 22898.9667 13182.2078 6970.35 11853.8075 10536.56 4383.7185 6087.6458 25644.3432 10455.6283 24098.3891 13454.3541 23122.5376 5103.9006 6735.3062 11002.6312 7740.4598 18119.5965 330825541 terc Metal Homeostasis Tellurium Detoxification Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 48867.3738 35160.8733 30729.6767 32796.3365 6546.2657 17913.5876 27462.6081 18488.8606 34905.1503 37339.7927 60768.7412 891424.8838 78986.2213 97372.1045 71509.9372 25083.4324 25083.4324 23765.4925 141912.8822 31820.7088 37394.2009 147282.3593 105474.7458 56520.1924 37019.7092 41364.3905 82644.5215 97598.5695 67172.8468 84434.4885 29732.8 41332.9843 71816.9811 37679.5173 41697.5451 259346446 alkb Organic Remediation Other Hydrocarbons NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4560.3732 12536.4451 3772.753 58256.083 2741.4222 4948.3851 3561.3362 9655.2943 5315.3035 6180.9458 6449.8522 7092.2694 2085.2176 2997.4768 2623.5871 4131.5568 284797303 nosz Nitrogen Denitrification NA Neisseria subflava NJ9703 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria subflava; 19115.9342 7845.2414 7058.4657 7884.0372 5508.5026 13918.2604 4192.5158 14734.0234 33615.6398 7278.7067 287499.1345 14238.8638 36856.4579 9220.5307 5360.3781 5360.3781 9734.1792 17708.6752 10367.0916 17011.4951 13265.8957 22893.5502 5992.9861 6499.3242 21294.7459 6993.898 29739.8624 12539.0313 13635.3369 5105.7856 8977.632 12019.5856 7801.1843 13076.5642 199653476 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10083.1111 10551.0893 7390.657 20476.0017 10854.7827 5279.2048 6297.8636 11255.4124 10382.3313 3971.2222 224129.0721 17726.177 9465.8873 7699.2904 3939.3815 3939.3815 5601.7281 21099.6709 12333.0117 11659.0023 17975.2178 20835.4404 6818.7835 6332.2521 22284.1637 13640.7799 25092.8611 11489.7974 14841.6526 7389.3711 9588.1956 9330.2371 7473.0715 21651.1727 306488361 nirs Nitrogen Denitrification NA uncultured organism 17146.8881 130074.2943 7053.0036 32402.7999 26388.926 18595.0414 6478.4478 13508.3563 4832.7189 8646.6665 16541.9677 6146.795 171004.4512 13119.8718 14006.6454 32911.6029 88204.2939 88204.2939 6925.1654 17258.6585 18953.1252 15081.2802 12451.9332 9494.4873 5418.3154 8602.0224 18853.8635 23360.2725 26232.5243 11751.3158 18469.2372 8454.7764 13780.6032 11858.2515 11093.5191 16582.5412 60475956 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 28913.0356 8449.8083 4184.7907 15428.5682 8541.8019 18599.8572 75126.8077 14105.828 93548.3909 23163.6175 182920.1937 26287.8224 100810.1725 20475.0329 26425.7434 26425.7434 18941.0105 48846.4784 26123.8414 19745.475 69763.407 34195.4554 18055.3838 13248.7398 26395.0311 23910.5947 60815.3212 52048.3971 28679.5332 21075.1188 84901.6327 30067.7308 133070.6294 43071.5588 115401252 pel_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 20344.8301 12798.8279 3371.6646 6133.3689 2919.9518 2952.1496 4749.545 3520.0876 79273.885 7184.8942 4583.4533 5606.7528 2178.7743 2178.7743 3458.7157 8572.6517 5556.4874 6118.0459 5284.1858 7758.2008 3239.3921 3309.0813 8369.608 2455.6381 10553.0101 5415.6818 12396.2801 3473.7323 3631.309 5910.2451 2684.234 6538.1426 60593149 dsrB Sulfur sulfite reduction NA uncultured prokaryote 50874.9889 15728.6637 51686.4405 54019.4429 13586.6492 24503.1394 21416.9796 92728.9844 96338.4085 120452.0582 88330.1444 94512.6503 762422.972 41081.2864 46911.3352 47924.9017 61206.1019 61206.1019 17993.1301 40316.5932 37416.2762 28984.0536 73758.7586 41108.6748 42676.8872 29464.9319 34142.864 24245.471 170676.3092 30295.8845 82803.1808 44627.001 45733.0765 49789.6758 27804.0022 38676.8242 222440607 FBPase Carbon Cycling Carbon fixation Calvin cycle Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 4948.1784 4653.2538 9071.1854 114484.793 9577.1865 5758.7283 8218.9477 6716.3268 171330.8148 7232.0764 8428.0649 3233.1727 3233.1727 3938.0114 15928.0501 10721.2635 4030.8897 5784.5999 6341.109 7257.9237 21992.4834 8082.6245 14285.3976 9090.5802 13612.9541 6951.2779 6840.4484 4452.4238 4678.342 5771.2125 336103014 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 25206.5525 13351.1556 33839.5118 9547.1318 133574.7096 5528.6102 9495.7692 34288.0011 51505.8442 24652.6796 41108.8945 18430.7687 2028760.0796 20223.4703 27237.3642 18060.5734 12036.1663 12036.1663 11002.5396 37013.627 19817.9541 23185.7087 168580.7879 82316.2166 19607.7466 23121.2825 41598.8046 21125.5618 40152.5129 28527.8776 26206.7337 20871.7798 37719.9311 47124.842 15680.8265 24566.4284 82618393 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4517.3924 15945.1693 6349.0959 3759.766 5955.1789 2058.1964 3053.0158 6637.9978 5963.4255 86013.2868 12637.9714 5831.2808 55054.3168 3542.7717 3542.7717 4296.6828 23937.7762 6356.4184 5362.1586 6081.52 3683.8798 2975.2855 4286.4129 12433.4989 3976.6542 34816.1176 8034.9471 12498.1745 3671.6631 7037.4634 7202.171 117221.5751 15127.7834 398138445 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 64530.2302 3105.0725 6074.4348 8104.4365 5967.6064 4098.1354 63023.5174 10804.2476 11577.8808 11577.8808 4203.6305 5516.955 3230.0363 4078.0781 2599.0303 2615.3589 8230.013 13741.9525 6827.1883 5472.1289 4592.7796 12661.313 14762.0905 9833.7654 20502035 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5523.6443 4737.8412 4796.2063 3436.9306 4015.8194 3146.6008 5270.6328 68445.2999 4337.1291 2932.9069 8375.7636 6463.2714 3975.9038 7159.579 6425.5628 3363.9873 5147.3109 2761.8203 14694.6082 4172.3324 6805.026 3943.2638 3618.9827 5566.406 3836.0122 5873.993 164643400 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9564.8996 25254.8978 7472.6054 4747.4227 20932.1874 2374.7856 10547.2236 5676.3189 3393.8431 3393.8431 16169.7233 2396.5994 3594.6323 3042.261 16117.3673 35688.7379 5471.6996 9955.2247 3377.4548 6767.5037 2453.8692 386775365 amyA Carbon Cycling Carbon degradation Starch Brachybacterium paraconglomeratum LC44 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium paraconglomeratum; 3986.0748 5802.6596 9222.7131 16459.8835 3958.4855 3771.9383 5035.9778 3897.6163 70163.2557 8511.1601 7314.0667 2147.1916 2147.1916 3872.7088 6592.9336 4660.5756 10181.6963 5384.8311 4312.5206 5833.2625 6339.7157 29902.9701 5555.1662 15467.9599 4884.8883 5351.4247 6801.6739 3164.2371 13988.5116 149821035 linb Organic Remediation Pesticides related compound NA Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 7718.9966 40793.6636 7875.9538 7495.1944 4675.0268 4319.713 8939.6993 13080.6618 8639.8294 12213.524 104823.9613 15151.2318 9314.2744 14823.0834 19331.7809 19331.7809 8405.7293 33774.6401 6587.9211 24106.3134 46256.7748 5667.4634 6973.6279 11174.832 12599.0205 4493.429 16045.3939 24465.9914 15082.2356 5047.504 16242.4905 13101.223 4668.538 5583.9047 212171466 alkb Organic Remediation Other Hydrocarbons NA Salinisphaera sp. S19-3-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera; 8945.1863 77378.091 8015.4792 9782.7694 4223.5024 18122.5874 7599.9963 6782.9866 5553.1889 108168.1942 43588.2586 9416.1887 36080.1528 16061.215 16061.215 15124.5667 10805.7888 28574.5275 5673.4816 4071.306 2224.6001 8297.9456 7145.8425 7615.1982 11112.847 15783.7357 9597.6668 29887.5688 7005.5423 8755.872 3489.1335 73813.1979 227487474 mer Metal Homeostasis Mercury Detoxification Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 33274.3864 28712.6969 25569.0463 19877.1795 5423.2681 20250.2262 30421.4123 15097.7482 21680.4494 45718.3307 30352.7623 523237.0309 34579.912 29188.1057 42115.9572 14413.3625 14413.3625 20858.6125 36807.131 25690.2316 49914.3945 49632.0945 70479.761 13479.5288 34798.8049 35716.0776 49350.1476 55067.322 25788.0854 36561.1233 24812.1657 20100.5495 23071.8693 35530.6872 423935.5379 91782273 cyma Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 955361.7487 11012.1102 5133.3695 16822.0751 52462.0141 10374.8929 3908.7535 5709.8539 7757.6937 4200.8787 121209.8539 10979.1847 9053.3616 5262.0099 5262.0099 3463.3793 17068.1898 9980.9682 15868.7266 9398.8038 11028.1511 5865.9375 7934.0343 12765.1027 5308.1243 18864.0106 6342.2516 11174.9921 5375.3355 6523.8505 11624.8148 4801.7851 10026.1526 109452539 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 39791.3229 219627.0273 47840.5241 21557.1084 11598.5297 26045.9874 23013.9678 21520.8081 24390.1498 80995.6079 21531.8617 805524.3273 31825.1401 44479.8568 67249.9262 27696.9056 27696.9056 19205.8815 38201.2131 31796.7243 39075.2024 42339.5249 35873.6188 20982.3843 18998.2135 62541.737 17229.3707 82333.0747 14621.6822 33224.5451 36578.6031 18374.2538 24834.7236 15782.506 48718.9318 329298767 terc Metal Homeostasis Tellurium Detoxification Plautia stali symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 5291.3256 4927.893 19002.5585 3138.318 5664.4124 345853.8774 12077.6682 8094.6364 3093.4486 3093.4486 7329.0872 13497.4477 8368.7827 4129.3248 3876.6931 11767.1186 3056.3111 6104.3503 5034.6973 227842773 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 7061.2673 8063.7436 4971.6723 4409.0213 5992.4533 6693.0226 8027.1857 4178.6989 125293.7433 8674.5172 4844.117 11667.8786 9247.6559 9247.6559 4650.5061 12993.9729 8384.2283 9212.2061 7749.9369 5466.1183 3915.7064 6359.236 9207.1122 13375.0841 20217.8009 13585.2492 11743.6137 5504.8573 7195.3688 7697.2781 7489.1749 10618.5198 328927364 amyA Carbon Cycling Carbon degradation Starch Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 3750.1027 6614.4256 2209.7008 4086.2186 2752.4099 217600.2671 3584.6919 3783.9035 4910.0857 2208.6975 2208.6975 2868.6757 7109.6816 5031.2721 3712.3316 17668.2153 4897.8138 7469.0212 11073.6669 8064.4273 11129.747 2686.6506 4898.2313 7865.2416 2534.141 5354.7384 386016705 ppk Phosphorus Polyphosphate synthesis NA Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 4792.5025 11415.1555 15007.4594 48312.2866 24936.7922 3953.9564 13176.8951 2694.8081 7570.5415 7548.0365 4852.4068 354124.7949 13014.623 20156.7475 46086.5623 23841.4859 23841.4859 5203.7325 11043.1755 9482.1421 3589.5348 9021.319 2784.5214 8991.8341 29840.1683 4831.6131 12176.303 13719.2555 19557.6201 7380.306 7577.4764 11711.8255 3345.8119 4604.3839 34104244 endochitinase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 13904.58305 78584.0141 6015.6268 8860.509 3521.5543 2651.2186 5556.1584 3348.8169 115589.0137 4467.9285 9063.5345 4820.5169 20026.4007 20026.4007 2584.4158 8472.1468 4496.5542 9584.8598 11982.6192 3126.5093 11293.1013 4483.04795 12169.4887 7707.97875 6439.0952 6149.716 54843.9765 9485.9794 10318.015 118424349 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7879.3972 6157.4912 8073.3536 7619.8275 6274.7256 6330.8602 27366.5504 4239.487 4591.1382 3614.1281 165012.1215 7501.2847 5290.9562 2101.2008 2101.2008 3085.8961 10052.0399 6761.5278 8641.8098 5883.7593 5234.7951 3327.7335 4394.003 6204.6077 5162.5854 18300.3684 7315.745 16762.3466 3413.5741 4499.3944 5174.0674 4628.3518 19091.4887 302436842 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 124175.0311 16531.3645 572960.4018 117799.7428 228227.7428 33094.2191 102086.7118 86439.9135 386887.3704 56038.1655 107703.6184 126716.5309 1462631.0864 136275.5646 124587.5 136493.6104 110959.8567 110959.8567 178759.0494 123107.4862 63698.0073 328382.8878 136645.4639 184001.1589 70502.98 122270.2297 133544.965 74845.3533 169966.5121 78231.0836 188200.2808 66229.3834 99351.1949 67782.2755 58525.416 96448.0806 398189687 pcag Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14967.8453 13223.6733 12356.1468 26602.3362 25874.7906 21206.5111 25799.3897 9708.2817 18724.6343 19753.2664 8204.5686 392156.3343 20958.3876 15463.6447 14196.8304 10422.2778 10422.2778 19068.9088 28996.8969 15884.1812 40574.9772 23982.5706 25079.9506 10895.3793 6850.6145 56374.5564 10949.3023 35374.2954 19964.3233 23660.1867 10838.0817 13043.062 10406.4031 10370.1822 28222.2192 113946682 terc Metal Homeostasis Tellurium Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 127896.7378 48465.4462 35977.7783 53432.5054 8022.0725 116971.3861 20135.1789 23973.6462 44136.3392 68141.3623 67739.417 688792.7617 67516.8382 36968.2459 68009.0866 71254.6418 71254.6418 27789.3728 71962.8031 27667.0009 36987.7573 94392.8104 155001.2014 50996.0683 30767.1102 35203.5504 25694.3481 78371.39 34778.376 46960.5133 19072.729 34779.3095 37317.0633 20499.6765 60770.2543 376399412 ppx Phosphorus Polyphosphate degradation NA Klebsiella oxytoca 10-5250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 21901.8252 54192.2536 6193.4047 2692.4071 56184.6386 7109.2873 8437.1377 3866.0854 4688.8014 4263.6722 2237.5533 4318.7404 3965.7323 5251.7533 2937.4811 4586.5747 21216.9486 160890884 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 39621.3482 5887.8777 11963.8562 7897.1766 11010.0583 3631.67 10739.3375 11084.8829 9251.3926 210457.2779 11746.7705 12550.5114 52720.6562 18646.1035 18646.1035 7699.5904 16288.314 10658.8703 10932.5197 16190.6823 34066.0238 7202.9667 7229.282 17477.0552 7097.4791 50129.4411 20520.9514 21184.6708 6148.5427 7684.4955 11672.1034 5621.8674 15112.0321 52425291 amyA Carbon Cycling Carbon degradation Starch Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 13881.7684 11829.0834 5943.7111 10145.3413 5202.9932 10465.0129 13245.6074 5873.7147 11757.8635 15548.8736 10038.9315 265080.1164 14694.9052 181872.7668 15543.4177 4880.099 4880.099 33039.7429 19423.8845 19126.9431 35876.4939 19250.6659 18710.0289 5443.543 6816.2735 14670.8234 10067.1472 26242.9884 26550.9664 23733.221 11021.0465 10063.0428 12404.3634 10713.1912 11859.9101 206601892 aps_apra Sulfur adenylylsulfate reductase NA Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 6022.783 6003.4066 10572.9268 4766.1313 4217.8911 2952.171 14757.6435 9036.0875 85170.9063 6727.1115 6482.6935 9468.1663 9689.1046 9689.1046 24432.42 8783.9429 6007.3874 7797.3877 4627.413 3683.9433 7264.9885 15640.1721 16134.3583 16235.9398 9753.1523 4697.4954 5157.9706 12645.1982 3234.2674 10561.4962 296021683 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 14475.7741 8779.5961 12408.7201 9785.7171 8108.8687 18012.6353 12544.0721 22521.141 9047.9153 272381.9236 10440.1154 37559.9847 10169.3925 7182.198 7182.198 7094.6853 15229.9209 9794.0839 10181.249 17641.6688 637236.1665 5628.907 7317.8376 20818.8019 17668.0438 698305.0331 11208.1494 15354.9473 12541.7638 9081.1007 7726.5229 67649.4328 12114.4312 328882652 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 22785.3073 22783.8402 38036.2414 15740.0077 27274.3697 7059.9637 28167.1559 11441.0219 13108.5664 19839.1895 19238.141 16281.6434 310106.3667 19418.2958 31041.6488 14464.2276 11761.4287 11761.4287 9810.709 26779.4672 21159.7404 45871.1956 30549.4563 22516.7245 53754.9223 9878.8404 30904.2958 10837.708 39603.9215 19902.6467 26040.8836 11906.2602 23815.7364 15656.8355 8903.5169 262094.9328 389877440 dehh109 Organic Remediation Chlorinated solvents NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 9981.1038 12268.1784 6604.3077 15087.6903 3963.1319 5802.0103 2853.2121 8180.373 9022.1021 29004.3992 163700.5497 24184.4059 9470.4974 10889.8538 27045.7051 27045.7051 7720.0128 33630.7219 9317.4155 8776.991 62692.3769 12849.092 4519.6666 6897.189 54949.5232 5348.8079 22025.1544 63296.2905 11312.7277 6722.9808 8788.2833 9987.9245 5367.507 12511.6649 19887085 mcra Carbon Cycling Methane Methanogenesis Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 6402.0524 6211.8729 14095.9232 11004.5035 3694.2948 5925.7973 8164.7815 3496.3737 4853.0484 12461.8476 2167.4143 2167.4143 4825.7173 7857.1602 103594.5427 3907.0905 3001.9364 28964.9137 4205.9278 24337.292 50543.2013 7995.6923 5671.9717 5000.6221 6488.2465 5317.1869 7185.5699 45386257 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 9940.9715 2245.5133 2599.8544 2646.0125 3564.777 2736.6042 302882620 cutinase Carbon Cycling Carbon degradation Cutin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 31992.9621 11193.8748 15866.4389 16678.6703 11425.0749 5897.3071 10411.0191 17678.2074 12065.9849 14820.3286 14324.4658 261783.0321 9430.5101 21700.0064 16083.3949 19031.9234 19031.9234 13273.187 71357.9129 14752.9069 63813.6127 237073.5069 334381.7686 102735.6261 11131.4059 28611.3726 81081.5583 117942.8056 16674.164 19000.0314 10404.8966 16035.7664 67568.3906 10777.7513 251079.9526 297551144 vgb Virulence Antibiotic resistance Degradation Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 5254.9214 6019.3122 9027.2028 9346.4802 2833.6435 6195.8981 7968.0156 7253.1099 87346.4806 5156.0583 5249.1473 25678.3236 25678.3236 11246.3715 5948.871 4155.3538 5738.8736 7422.9197 2996.2682 3994.9043 9180.4848 3389.0416 13871.9476 8333.9002 9598.0887 4914.0909 3867.4497 4778.6186 2705.1316 6696.8514 134142967 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 24745.118 22741.058 45034.5364 18823.7911 7375.9034 21978.0064 24415.4071 22324.1747 20533.6283 26579.8617 16743.1921 638005.8702 32872.3183 32405.4732 35793.4515 32935.9971 32935.9971 241487.3561 34949.5413 21875.2396 650239.2663 34498.1059 33531.5247 13048.8917 15317.9968 42310.4429 13580.4688 73034.8003 28923.4795 43121.8848 14648.0332 17876.0579 22729.2513 14071.1432 35678.9761 82801427 alkb Organic Remediation Other Hydrocarbons NA bacterium alkW40 superkingdom:Bacteria; 3776.8383 8709.9579 4242.1084 35089.5262 2829.8994 3797.3572 2544.7446 2465.6552 2465.6552 10484.2162 8136.8134 3959.9484 3393.1893 3662.9273 4576.282 338751668 ppx Phosphorus Polyphosphate degradation NA Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 14084.6806 16757.1571 8545.1762 7504.2438 29774.954 7936.8566 6521.0056 5923.6002 5011.7381 9799.4022 10653.2639 9732.9421 178903.2699 9831.3962 7695.452 8251.56 5457.8418 5457.8418 7396.2966 32909.737 8351.7675 6861.1004 10698.2766 17703.5054 6824.5923 6238.4776 10094.4742 25437.3052 33514.2048 9663.1548 12850.6934 5277.9923 6690.9586 6328.4426 4806.9459 11867.4854 291513633 heparinase Carbon Cycling Carbon degradation Heparin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 46767.0374 29257.0538 16007.5997 18833.8144 9696.9065 12202.3254 23377.6327 30330.2291 63607.611 177052.7939 47819.1447 856572.6414 100198.1107 131089.7296 28632.7176 72024.4232 72024.4232 160054.3314 59921.663 114079.84 44851.734 73937.8945 33533.3046 26610.0763 47007.0468 26845.5808 47036.9926 72970.384 56648.5175 62429.9271 48889.9265 51933.9565 28921.0696 20460.0121 436246.5996 145591423 mer Metal Homeostasis Mercury Detoxification Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 139129.9642 10148.661 76107.2915 10381.7106 44369.1384 319457.4479 27811.3632 59628.3499 10135.6888 120637.3416 145387.9826 74948.5351 3032092.1477 152118.5798 86474.8699 143071.2806 56858.9253 56858.9253 123001.9506 104922.7439 53928.4223 67260.6464 43510.0201 420942.7657 82275.1174 53317.1359 166065.1865 48939.6482 203458.7287 116283.7341 117931.1735 82651.7671 310098.2927 100076.4045 39270.2259 21190.5194 21220949 nirb Nitrogen Assimilatory N reduction NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 83037.8718 9826.806 45776.1479 25025.5935 4817.9584 11041.6976 3579.8448 10439.4546 12981.4363 6609.9424 230431.1052 12200.217 17484.7151 30122.9209 19059.2813 19059.2813 11970.3914 29738.7947 14236.1399 9748.0352 8551.1829 6081.3897 4281.5182 10392.8139 30834.751 12988.8499 28485.3464 29939.8226 23401.9561 8683.3974 9250.1137 7697.6693 7941.5066 7929.9216 163262125 napa Nitrogen Dissimilatory N reduction NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 5895.4518 20919.5124 28034.1234 3803.4021 3007.5693 6351.4208 5626.7953 13834.1309 6790.4937 4759.7891 9045.4551 3882.6775 3882.6775 3425.2747 26176.8849 23780.3674 19863.0594 8547.284 3429.4711 3991.0633 6374.1027 4861.8291 13348.5617 6275.6497 10280.7141 2682.121 4329.2757 9303.6562 2906.389 15056.0699 84383827 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8203.2598 3507.831 7843.7406 2286.4298 7979.7577 10389.7172 7828.531 155224.5049 38887.1625 8842.9557 9840.236 3125.309 3125.309 10910.7557 17358.5802 15365.9603 7088.7442 13752.1571 9282.4172 7029.8836 5064.1429 14311.6308 6007.662 18907.1365 10159.6601 10527.0914 4745.5761 5716.1411 8745.5582 5300.4586 13963.1043 332981409 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 5109.4698 22501.0579 6448.2957 5046.602 5368.5472 2448.3305 374370290 xylg Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 156349.922 7349.9211 12460.5345 7789.5063 5571.1339 12817.4707 1494948.7609 12450.7701 7832.1668 25483.6141 10159.7942 10159.7942 7844.5279 43450.6075 32328.6194 273405.4036 21673.1768 20505.8816 12673.2848 10962.8838 28525.873 18547.1952 15944.2662 32620.4383 31852.2217 11764.1344 22359.1003 68247.3509 11887.1738 9171.3293 260654547 ppx Phosphorus Polyphosphate degradation NA Jonquetella anthropi E3_33 E1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Jonquetella;species:Jonquetella anthropi; 20127.3239 3918.3102 4390.2766 240247480 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 51838.8739 24657.1949 32571.3419 71784.8348 23292.8123 6032.1632 42323.9571 109749.49 53212.8215 31132.9209 64680.6482 54218.081 875055.9417 32199.4167 43698.7836 74723.8374 28109.7837 28109.7837 123058.093 66915.1834 43056.3414 29752.8153 64856.3414 32975.7959 24808.6512 30048.6225 39853.7349 54169.444 107886.2792 73255.3332 60168.1803 121214.8197 45829.7981 70960.1379 59295.8497 82248.9188 269837149 catechol_b Organic Remediation Aromatics Other aromatics Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 18899.502 23424.2607 11147.2268 5992.7522 20158.7061 9897.8041 14327.8561 14315.2142 16436.7892 44029.8748 332900.6371 12337.9998 12635.7531 11936.0391 9509.657 9509.657 16408.9156 22277.4461 14340.2745 13391.7989 77718.9659 23667.6328 8251.8002 10703.5819 26378.5057 9701.8184 29683.6804 18909.013 20263.8865 21705.0434 29927.2019 17335.3166 9510.3269 14821.3574 270339652 pula Carbon Cycling Carbon degradation Starch Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 3824.0362 3626.5791 4539.8298 5201.9194 4142.2832 4921.2183 2288.3959 3786.4315 356643410 dehh109 Organic Remediation Chlorinated solvents NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 112039.6123 35747.9274 67253.0369 60879.6381 74629.6242 2308426.0546 57324.4442 37263.6333 32803.054 46121.5782 108318.5465 24831.7499 1490023.9525 65814.7855 115978.7739 56618.0746 40302.3542 40302.3542 79810.9747 72098.1136 43463.9687 91345.1397 171458.9368 121495.0059 32847.974 24616.2677 59365.3366 53240.9771 103119.2541 61815.0829 264015.3296 23250.6768 38816.8879 162867.6027 28421.2237 98890.671 219675394 SoxC Sulfur Sulfur Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9151.3273 4773.0154 82638.8185 4675.3089 5392.42 4388.3481 8995.0178 3631.1411 241258.6028 16037.2026 9995.4597 18665.9707 11550.4732 11550.4732 3662.6942 16431.2509 17936.9621 5545.2257 2479.6589 4675.7425 18585.9235 3523.7693 15543.0985 11368.4441 12526.5422 4236.3199 6399.9873 4008.6543 2597.9844 257479579 ara Carbon Cycling Carbon degradation Hemicellulose Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 18254.142 8252.8367 25515.0575 10788.4651 9757.978 30723.4715 11090.974 14645.0541 54141.0341 14457.1544 9530.2568 245724.803 15664.0126 20372.0671 131311.7296 12113.1683 12113.1683 8121.6008 28161.0159 15322.8171 44970.3401 18686.2292 25901.5218 106675.9005 9023.7725 20503.6001 9902.3428 34520.2827 14319.8098 23982.9818 11182.5486 14340.1033 15382.2793 8797.5682 24585.9185 389815426 arsc Metal Homeostasis Arsenic Detoxification Planococcus antarcticus DSM 14505 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 6030.9394 3168.2147 6656.668 5351.6817 4019.0221 8564.098 3587.1063 6363.2124 4723.37 5133.0918 2165.4402 2347.9685 119714242 merb Metal Homeostasis Mercury Detoxification Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 43877.763 12850.1182 1194652.3041 54030.3806 34359.6793 839556.1758 447008.4539 18682.7543 18931.6737 69970.4725 43696.4424 29400.9707 627088.2781 39621.4513 46963.5674 35554.7179 38779.2762 38779.2762 23402.4363 73244.9533 47032.1157 46907.0784 64398.4239 47654.5127 32121.6517 25031.0576 77620.5006 50988.3211 81310.2906 94541.9815 48994.221 20928.1599 31947.9032 38184.5834 89464.3795 53510.7648 217978430 pgk Carbon Cycling Carbon fixation Calvin cycle Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 15894.4818 113887.8518 17081.0123 42479.0275 22497.7631 22135.2974 18497.0569 16603.5692 20594.8315 33552.0531 290957.7336 11943.4858 20173.6604 21540.0998 12960.5616 12960.5616 10292.2615 28400.9822 15164.6012 14816.2068 18545.6843 15177.1976 14394.7815 22711.2945 34595.7368 31730.6862 61146.56 23543.8216 20518.9037 14880.2983 19877.2217 25602.4008 21774.8617 21653.5875 84778365 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5917.7373 4235.8945 2626.2925 6890.7261 36425.643 4437.9925 4923.4469 6590.1021 8068.8093 8068.8093 6467.3774 7215.0022 771878.8325 5101.0492 3340.0905 5155.3896 50063.183 2046.5107 4423.2783 4025.4617 17118.0068 56809499 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 41527.2578 20549.4408 4788.3572 6231.906 2702.4994 9705.4165 10365.8858 4171.5897 111569.7626 6427.1728 6479.2009 6055.6704 5654.3673 5654.3673 3165.0942 10582.1919 12936.1252 5184.4165 13738.4551 5216.8036 3546.0006 12445.9332 27201.279 3349.8787 12621.4816 7227.723 16768.3307 10360.1274 7924.4399 12572.2064 3034.8439 6064.1868 254788460 xyla Carbon Cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 9464.0896 7983.0022 6714.7698 15032.3665 4449.348 9273.2497 12545.4531 5125.4317 6555.5245 11894.746 13155.5768 249941.6518 10834.9415 16357.2144 21575.6871 11636.5306 11636.5306 6655.4545 15446.7695 22677.4189 6618.275 8433.5365 8025.9555 5687.5585 4508.3745 12859.8316 6671.3429 203981.0647 13156.6862 12148.748 7837.8999 7783.0318 8193.4627 6508.4856 9974.198 46114270 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 3728.9443 5615.4471 4792.4209 4720.5049 4720.5049 6359.4015 4330.8232 3683.3346 2309.4558 2048.7192 9763.1877 3709.6501 1914.361 3161.8675 3790.8761 2310.6949 9798.269 340841735 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 5598.1077 1837.2079 4193.7278 102865.4019 4612.1515 3924.0471 2041.8623 2041.8623 9777.0448 4987.8866 5357.5749 7026.6673 4461.2339 2375.8699 2889.226 7605.7516 9254.8198 7055.0362 8368.2489 2072.7118 3623.875 3504.9018 2469.1609 6143.8717 6649589 chitinase Carbon Cycling Carbon degradation Chitin Doohwaniella chitinasigens superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Doohwaniella; 6201.9633 7311.949 4391.3857 144260.1998 3929.7628 10810.9155 82468.4517 5515.9471 3205.8003 3205.8003 5779.261 10214.2595 5710.2937 5284.2698 5652.6847 3920.472 6087.8751 8123.7446 5507.9493 26604.5469 5024.3377 6595.2192 3298.6537 5132.1958 5732.2697 4536.2657 254946678 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 10424.6898 1009233.2293 297275.543 8001.3984 3666.3748 4676.2743 5922.7862 4615.8328 3154.1497 102712.9071 7525.1287 4759.0877 3660.017 3660.017 4261.1508 8696.7142 6334.0523 5547.1698 4828.9931 3352.3333 2954.3419 9055.8348 4167.061 11901.4046 7908.4499 6585.0875 3752.3564 4582.7758 5627.768 3867.3146 12050.7473 111020561 mannanase Carbon Cycling Carbon degradation Hemicellulose Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 74294.6545 11895.364 68820.6767 72082.7055 51683.5234 21362.8635 55970.6167 60158.2819 34828.7138 48648.5115 77179.5957 42623.4414 1534219.5124 130595.5608 221739.8783 55159.5534 52709.7497 52709.7497 48436.494 70554.7614 34823.0148 56627.9493 69887.9354 83271.8001 40085.8381 33222.4243 51814.1004 34698.0145 90425.0803 28782.2857 62194.1001 33233.8358 41166.8249 66531.5806 40067.9136 114042.3772 61808012 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6096.3688 5643.244 5392.7362 4625.988 6720.4974 6310.1251 8983.5605 4248.9019 226277.8437 8087.7473 11223.1949 11805.5916 3115.9471 3115.9471 8182.9159 17732.4279 12017.1144 11811.5184 10685.1944 14731.3653 6140.2815 4571.79 10333.1266 6436.347 21201.6174 10414.9069 15816.2233 7562.4834 7638.3366 6567.0526 6219.4095 25409.0043 408779965 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 4955.5741 2471.6429 3836.4021 18719.5715 4456.8636 4615.7955 61965.5807 5145.4555 12706.208 13681.1906 13681.1906 4005.3753 20320.6436 6135.7582 14243.4677 13669.0747 5353.7505 4398.5677 4091.5423 5869.9963 4162.1562 7264.0235 9300.7974 213991.7019 5498.828 8085.2882 7229.3307 4792.7818 5759.7348 306517710 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3961.6086 7086.6849 9794.9742 4167.6321 19270.0431 4546.3341 4304.8601 5434.5524 4740.8803 4740.8803 3169.833 6633.6067 5188.5177 714940.1511 31154.4617 2797.9285 4010.2255 5375.4653 3591.0019 8955.3105 6519.7399 7719.2098 2220.8757 4910.6438 4138.4472 5680.9943 103488518 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 10785.1245 2154.148 3330.6549 2376.8372 13145.1584 5466.1487 8349.8141 3301.0616 4231.1075 4350.2716 2537.3412 3248.8483 8196.4762 2450.3729 9172.7274 13142.9129 2241.7805 9667.5198 5335.4504 223714270 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5427.5149 7958.0652 7589.6423 2974.9475 3820.6492 7815.765 20258.2067 4249.6469 5261.5514 3771.5223 2338.4483 2338.4483 4275.9122 11771.751 8437.2169 6497.7307 8702.9221 9904.0316 3900.3039 4674.9463 10107.3293 3343.441 17088.2459 15488.5143 16126.2308 3928.0622 8708.8553 6812.9307 3096.1841 9328.3026 148658262 mcl Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 4310.3026 4723.9033 11008.9711 19700.8647 2546.8809 17484.5554 5469.4333 2398.6382 104033.1262 6748.5327 5091.8598 4184.4758 4184.4758 4634.952 10787.8481 4608.4021 3622.3175 8951.4838 5273.7241 2221.1005 2929.1387 6770.0278 31223.3828 14016.2094 6927.5232 6058.8183 3751.0095 5437.6384 4329.3202 3295.2126 6517.2684 237500435 alginase Carbon Cycling Carbon degradation Alginate Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 145134.7379 10087.0204 24325.4972 3219.5097 4071.8138 3872.1383 4909.8822 6930.1172 3607.3993 206881.7366 7824.6052 10016.3414 10279.0216 5409.1271 5409.1271 6597.6564 12760.4127 9780.6894 9446.3633 8750.1528 14293.1366 256618.491 5135.8251 11854.8921 2953.9134 26917.0696 10351.9993 10436.2411 2802.5004 5171.4458 8114.2355 3839.3473 7308.9424 110825410 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 434238.2647 194281.7339 279946.0681 354481.3409 315211.4709 421375.4924 325943.1425 664484.5206 244182.3932 228044.5455 319353.9743 235461.6371 6944725.7899 243506.7654 344978.2104 616857.7888 301884.983 301884.983 147038.9949 270102.429 155045.3213 255029.8621 315671.9522 237055.5 175966.5171 148994.116 270407.9491 165117.1269 409888.5102 134217.0664 245882.5736 105403.0383 137015.6115 192680.6838 126827.2624 551984.6225 308433813 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 10744.1426 5148.3326 16637.0316 11568.713 5010.0994 3904.4106 3358.3003 19016.8723 10522.5055 6295.7654 135253.6441 6380.1433 7300.7817 9201.4063 4877.0114 4877.0114 9666.3822 8664.044 7038.1632 5805.9896 7870.1851 10015.4991 4192.4725 4518.8618 12240.9208 4114.2955 17946.4507 10484.5755 11269.5274 4037.6236 5951.244 21457.5933 3600.7362 8338.9182 321164198 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 78025.7021 6590.4039 7041.4644 28119.3914 7183.7271 3608.3447 14198.9539 8952.1259 6697.854 6539.0724 119729.9581 10252.0036 11762.7132 6488.9231 5619.7269 5619.7269 5039.4012 13799.3805 8561.473 8198.1495 7202.7565 29083.7694 5889.124 4927.3429 17398.2922 4396.5122 21383.742 13471.2045 12075.2928 8002.6376 5839.8802 7484.0235 9415.8644 182634818 cysJ Sulfur Reduction NA Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 14059.3053 6094.6184 5133.5248 10912.5799 23521.2857 53564.3695 38315.7764 5024.0816 64229.8134 11870.1655 12982.9626 3187792.0513 12837.6604 85908.3584 22466.3716 8105.5793 8105.5793 7429.0019 23871.9992 9510.7854 7745.5078 19182.3469 10687.1889 7931.8806 15368.1859 17306.4455 26502.0478 41125.3981 17993.7932 18756.0718 14421.333 10687.9264 22681.3003 12980.2054 122570.0342 309245367 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7957.0808 4845.4509 4420.1246 5664.6015 2143.2808 2727.3865 2880.8742 4342.6362 2778.3203 5969.7093 5372.2274 2716.2948 7415.1906 6511.9372 5638.7089 6398.9205 5092.2668 3233.249 3001.6874 7489.1061 2165.2795 10975.1925 6198.1676 6577.2987 4514.7918 2995.914 4041.3036 2155.0823 6810.7439 296923179 amyA Carbon Cycling Carbon degradation Starch Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 35486.7118 6503.8163 5007.4093 21983.9179 11838.7857 5875.7345 14154.2741 5830.3773 17993.2935 21973.1887 11529.988 178604.9976 12356.9753 25611.0798 87710.4946 21602.4467 21602.4467 5748.5476 34057.6953 24612.4757 11418.2667 34094.112 10195.305 8608.0468 44888.3472 23135.2222 34308.9782 36062.1461 24338.4305 56920.0199 8609.3263 26038.4619 33010.092 10133.6168 12533.4494 86609164 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 75428.7345 143440.4351 3382.4133 2393.8985 6062.0562 5874.4578 6053.1208 82182.7811 7743.7933 3846.3109 3082.4541 3082.4541 12338.7696 8538.4551 5815.7717 10114.2275 3953.3572 2657.8827 6409.4313 4093.709 10850.908 14742.1798 2465.7004 4897.8666 5219.5496 2334.5405 6014.1697 158331886 ppx Phosphorus Polyphosphate degradation NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 27430.6105 9017.8812 5805.6062 23260.1485 4744.1512 14772.8399 8778.83 20307.2612 60905.9913 33874.4085 230643.5893 72556.4397 55195.4022 64275.6928 29046.8346 29046.8346 5829.8414 35111.2684 27304.1107 29846.5833 16839.7006 18949.4468 12240.2604 47578.9403 32553.3068 19094.964 37760.0413 21274.8199 27185.2871 8421.3903 18595.9811 25173.9355 15114.9167 12474.9623 295412940 mer Metal Homeostasis Mercury Detoxification Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 217610.2186 38428.6083 61067.1729 50727.7412 159839.8273 13967.4743 63735.2761 66862.7809 46129.1745 112719.6777 96435.117 53447.5169 1418686.7801 201248.329 435333.3599 79632.1977 148636.4233 148636.4233 43957.348 117142.2106 42659.2216 76136.235 92739.0178 734058.9798 76210.1475 76936.7382 62191.1919 54855.3621 177399.486 69805.3186 77058.6074 66443.809 71774.3536 154956.5427 95263.2451 217078.3572 32895042 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 509205.8385 226347401 EF1a_Jakobida Other Phylogenetic NA Histiona aroides superkingdom:Eukaryota;family:Histionidae;genus:Histiona; 21679.8513 17572.2105 274771.6985 11777.7507 17130.495 7815.9254 5953.5812 5501.6448 12318.7242 11484.1522 15298.7791 8656.2319 392492.4986 17529.9271 19845.7703 12135.1228 15463.3796 15463.3796 6266.3086 16803.5688 16603.0157 11581.3401 12154.8033 16753.8567 6501.4653 9005.4586 18347.5242 9617.3316 42218.6878 14819.9793 22509.0705 6881.1766 12086.8336 11172.0707 7127.3701 17128.5695 148569415 accD Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 6926.3651 213740.0439 6890.1282 3505.0058 4376.9105 4095.4304 6310.7139 14371.4484 11339.3699 5208.0857 10728.7139 3684.9617 11541.787 4958.1483 4804.0122 1957.8754 3634.545 4126.9785 10838.5026 212528630 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6019.1033 4064.0491 9634.1886 3993.4043 5589.7059 3480.6935 5143.4562 5577.3311 2625.1857 2625.1857 4703.6639 6954.5356 10464.5093 6869.2649 6701.1181 5679.1787 3664.9781 4629.4603 20884.188 5136.4195 20750.1609 11430.0769 10357.7127 4409.4296 5040.9639 5403.9253 4645.7561 8084.956 373096639 arsc Metal Homeostasis Arsenic Detoxification Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 26373.5168 4301.6152 6587.8948 12136.3427 4343.7545 10666.3848 64177.7985 22032.8805 144072.0259 15300.8104 10859.0739 13441.1311 9886.7618 9886.7618 6211.148 14842.1589 8112.3301 16628.9883 8904.6893 12528.7822 6928.3427 9312.9894 11154.4378 7374.2672 13155.1753 4206.5617 24199.6021 5223.6114 7917.8051 21853.9333 7751.6706 11100.447 187918833 catechol Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 242576.6849 98521.9829 10092.4634 5629.9181 152048.3217 25061.7048 12602.3889 14859.4225 33466.3757 21361.3235 292186.5731 17869.0552 9630.2203 8477.4233 101161.1036 101161.1036 9772.8391 41447.8847 15949.5089 17150.3987 39002.5084 14483.5404 8424.4549 15854.4057 15002.4394 74814.2256 39184.4376 22034.5472 34888.8718 8036.4396 11846.3708 15278.8689 19056.0036 18018.6601 150036060 SoxB Sulfur Sulfur Oxidation NA Thiocystis violacea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 34848.9479 19365.5232 30844.9105 54013.3354 7061.1095 67881.2879 10591.2697 18853.0172 58029.9088 49817.0971 426268.2811 44119.4007 28333.5071 70103.2183 44530.962 44530.962 32558.7116 191121.5971 30407.0601 60661.385 186462.2121 45576.8825 20231.9645 85259.777 37905.1452 183365.5625 92678.7377 50579.6546 52659.9066 20807.0384 26673.5173 47866.9854 34920.3415 68378.1565 240277183 nitrate_reductase Nitrogen N Assimilation NA Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 40512.7636 10325.9104 46501.0221 12561.7096 12472.6933 13214.18 13738.1179 13953.9145 22934.3503 10855.466 584762.0642 22250.5701 17190.8519 23340.0222 12197.5067 12197.5067 13039.8797 26198.3129 20445.9408 20572.7225 38329.2442 23872.3552 10668.3345 9230.9848 23092.5337 8838.4011 41252.4662 21328.6066 19999.9434 10126.7136 12263.8344 15048.711 10327.8733 33450.7904 328452232 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 111833.7898 15971.304 281066.8551 186766.6033 184785.5981 64302.5243 450605.7769 92394.9178 46221.8928 193500.025 164330.4591 120219.1018 2218885.662 599163.2325 104487.4815 114424.2478 133584.3496 133584.3496 49019.2196 210012.3228 63862.864 235894.3635 412593.0205 547762.3857 199693.8618 85297.9138 202934.0039 140036.9002 134340.5099 270960.3878 146362.577 109380.3264 110790.9499 148086.2562 89184.0624 65194.3066 2052182 mer Metal Homeostasis Mercury Detoxification Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 83575.5387 27926.751 76056.2497 60665.5589 73852.1901 27578.2192 34558.5853 65134.668 67029.6736 67001.5907 49760.5689 73345.865 3598666.0675 50907.723 156627.4822 68590.4501 62675.1674 62675.1674 404785.7391 91522.1602 67475.4385 47063.2078 51072.5849 64364.2795 42284.4638 31261.4572 79463.3162 166228.0047 145677.7674 72078.5275 127684.4953 32380.9009 39425.3278 317796.5618 32810.7644 84383.6102 371492600 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri SR5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5135.9828 9104.4813 118472935 catechol Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 143802.736 12495.0283 12406.7036 9873.7192 5012.9892 15291.4671 70344.4432 33770.0898 130514.2531 89263.3641 33972.417 227183.6704 14560.8964 25108.6756 86513.1992 68122.2096 68122.2096 10942.148 105857.5733 13440.0612 37427.3991 20053.9894 19314.8811 16335.7099 52762.9756 25127.2753 35015.7032 84613.1742 50813.5217 45048.3497 25781.2518 59361.7085 26803.6016 84385.2686 17719.2028 284030708 amyA Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 187012.5056 76137.8185 5096.8625 50670.8782 67105.2682 26369.1535 21283.1678 10430.7086 17479.6975 45827.5086 209430.7285 47704.6119 13244.3058 84808.3905 17046.4849 17046.4849 35846.0126 31125.2348 10122.955 33649.4506 50962.6335 12327.4317 29933.177 36783.814 12139.91 41493.0057 31069.904 26952.6547 24502.9834 19533.7409 39519 16729.32 10740.8288 12026.7205 392378783 ben_bcla virulence NA NA Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 165694.3134 113725.7359 85554.3375 159077.8716 105179.3063 98275.5771 148067.8221 206628.4417 170930.6706 122957.0978 156883.9789 115498.3841 2495394.6488 196017.5764 554794.4664 332479.3137 190905.723 190905.723 101607.3302 167803.9845 81790.5337 152897.1216 152559.6324 152857.3136 80604.5386 79320.3433 143888.1871 61126.3174 205660.6054 161556.5326 148362.0855 56198.7611 87852.7424 104999.9065 57400.5137 163934.492 338823153 arsc Metal Homeostasis Arsenic Detoxification Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5830.8545 8870.1468 7606.0942 8986.7456 27781.3587 10398.3971 9646.199 3828.242 6068.8578 3830.8665 581143.4391 20505.5219 6432.8983 4944.8279 3102.7002 3102.7002 8077.7844 32640.61 11809.7817 7209.9988 13012.0552 14734.7587 4101.8224 8921.1796 21663.0776 41244.5464 40258.9343 15044.6162 13277.7019 14135.9878 5671.9409 6499.0933 3805.0626 6475.2096 56420187 nfsa_2 Organic Remediation Aromatics Nitoaromatics Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 16087.6077 1664418.0849 84772.2207 8226.671 83755.11 11145.7672 11252.6909 48208.6012 7863.0013 33566.4406 7403.0804 348193.4902 18438.7296 15397.3055 8720.9583 9698.2757 9698.2757 14432.4388 16166.305 16113.7874 13089.1464 9493.8346 15328.7592 4945.5578 12650.8426 39224.7591 127207.3993 69872.5757 21905.4533 36803.0142 6142.4927 11139.625 10305.7488 6029.3225 10272.2099 3925395 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. G-179 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae; 13655.1948 6496.2345 2686.7174 23219.5714 7077.494 10131.3871 2272.6661 3741.3886 9942.4752 3523.423 3523.423 4628.9017 7630.4285 6077.1957 7279.3346 4003.2272 3407.2447 4475.6006 9298.1823 10724.2678 12889.1891 8004.2703 9980.5047 3702.8878 4997.1026 6920.8581 5692.1167 4773.5922 384114186 norb Nitrogen Denitrification NA Leptospira licerasiae serovar Varillal str. VAR 010 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 6257.0239 3375.0186 59030.2843 8449.1783 3994.8003 3182.1903 123088.8412 6551.1455 7747.447 4783.0713 9858.3358 7653.0197 6292.9039 7331.8437 9746.6796 3151.9875 3906.1462 12864.2364 10690.4465 26429.484 7972.5301 27206.0636 3602.9626 7192.1089 8506.0969 3917.5167 9063.4946 162568563 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5579.5276 3257.7289 121624.0042 5148.53 3662.0695 5205.1772 4499.292 2580.5066 2084.3436 17260.7282 3348.569 5676.4593 4565.6603 3760223 pcpA Organic Remediation Sphingobium chlorophenolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 41203.2076 25443.2823 80052.6251 18873.15955 72441.4173 81820.5054 66053.0576 33681.2933 27030.7401 31171.818 549385.2944 138201.3219 33054.7069 33054.7069 51725.3675 76671.4494 108767050 terc Metal Homeostasis Tellurium Detoxification Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 43657.241 44605.8784 34200.2848 28706.1799 7785.1242 13889.2905 17290.563 17828.7168 22950.7131 27785.0146 33657.2881 528748.8488 27698.1006 28989.9498 30426.7651 17553.8653 17553.8653 24788.9644 44288.0024 27514.2544 58008.4188 36838.9411 34966.6771 16241.3776 14482.1188 29139.6534 15112.6375 62828.2631 27046.8565 29257.7076 14180.0838 19350.3203 48091.0132 15922.4545 29101.3087 165879995 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 22784.5122 12600.0103 2081261.1842 1708702.9594 62090.2173 17593.2994 253935.332 11479.5919 13909.273 19388.77 18875.5828 31030.601 409800.1712 23839.2405 36071.7517 19666.081 19264.478 19264.478 12822.5141 38107.0973 21089.3467 26110.2441 47020.9378 19626.5321 9161.8222 13103.5531 28788.6074 17093.084 53526.1907 18878.5634 41638.387 14914.4083 14903.4312 17387.0178 15942.9998 28045.505 283439769 ppx Phosphorus Polyphosphate degradation NA Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 5384.323 3690.9997 6530.673 5821.0376 60858.8971 7610.4069 4409.3971 4409.3971 3256.3728 7998.47 47485.7173 10405.6202 2499.7735 3996.1445 13593.0762 3182.9741 17643.4793 8062.4463 6545.1019 3679.2398 4220.1791 4648.6596 5146.1388 62149224 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11819.5091 4190.1246 7433.7587 4609.349 4585.7886 5277.4052 10526.3941 2649.6297 138810.0798 6008.9373 8681.8079 3096.6888 3096.6888 7860.6179 11450.1137 10894.76 9754.7273 12645.0868 12050.022 5460.9742 4867.4329 10958.7375 3757.2235 18793.8341 7430.2379 13027.9593 4089.4468 6937.5523 7232.8944 5294.2095 17551.6762 315925376 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 222420.6496 254178.8549 77472.7639 97226.642 17664.1498 48049.0657 273859.9973 186778.6817 148242.879 102454.7322 135627.7435 2208442.4171 203661.034 308568.7294 132414.5293 130704.5918 130704.5918 83502.5807 297566.089 92525.2878 196919.5372 419455.5084 451630.5643 196339.7954 107691.4971 119590.6278 157566.3388 233551.2256 118933.8352 327348.6439 84083.215 139237.8902 355296.8325 145885.8213 155553.111 296118531 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 3955.8663 28127.8254 15629.9223 4025.3421 3455.868 5689.4113 6935.7629 3943.1274 107585.8282 7899.5697 6177.6346 6233.1068 6940.9028 6940.9028 3749.7695 6613.7135 8484.5356 5445.9122 8319.2332 11867.6758 3286.2699 3259.2865 10559.9444 3782.2244 11772.4347 4748.6064 12800.4486 4585.8049 7380.6154 5210.1157 2656.7199 5788.9015 297624899 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 7379.5625 118036.766 5640.2508 32620.3442 4872.6564 12474.8831 14306.3515 5309.9671 9212.8082 16602.0898 9976.8678 228110.5944 13405.3585 14019.1603 16142.5041 11516.9746 11516.9746 5780.2421 18247.5534 18436.2293 13670.9108 35331.4674 20689.2428 51497.4092 9637.5683 16189.7531 7245.2421 29420.2233 18757.4255 15854.3763 5417.0528 17630.6542 14575.813 6158.6811 23648.4657 290956028 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 8397.8805 8279.2965 8140.5757 6915.4218 6139.3665 14100.964 19998.2787 7114.6601 6853.3357 3660.5936 173807.9419 9534.2432 7208.8328 12007.1458 4806.2123 4806.2123 8419.5255 10312.962 5171.7857 3632.9783 9205.7768 9879.0853 4778.416 4084.8782 9735.5044 8961.0119 12616.102 5772.025 9908.1801 7484.3309 5476.7979 4662.218 4008.134 8338.7123 157804842 APS_AprB Sulfur adenylylsulfate reductase NA Thiorhodovibrio winogradskyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 37013.2945 34456.601 15890.9807 27514.8804 134047.0518 6246.3071 26644.237 56964.3918 29035.1678 16683.0006 33169.87 38158.9501 638837.654 37648.2325 34217.8685 18654.9483 23146.8515 23146.8515 17232.7985 42663.2198 40566.5468 25523.9724 169358.661 104267.4622 19334.5895 20059.8798 34179.6662 54276.6959 97848.9514 34916.376 37992.6788 18999.9938 30073.8439 27699.8791 19885.4966 40920.8026 177843342 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 11885.5794 4456.0251 7152.7914 2354.2115 6032.5706 9174.3471 10275.52 6077.4778 109185.4976 5684.3738 10390.3099 4851.7748 6251.8058 6251.8058 4173.7979 10641.9265 7199.674 6473.3508 9292.4189 13155.242 11337.0637 4895.145 6471.0741 10487.8216 11526.8716 7560.6634 14947.088 3315.101 6453.0348 9966.7548 11919.8333 357018601 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 8508.4137 191342.3387 3450.3013 3880.9093 3103.5446 5356.5347 6740.8974 98499.648 3265.8859 4543.9382 4543.9382 2948.1471 7207.6156 3595.351 19070.5749 4609.413 4824.0189 2917.5045 17218.2255 2240.0967 12189.263 4081.0066 15129.8409 2332.1828 4358.0047 8160.5475 2411.7967 38004625 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6108.7177 6827.8472 4492.2481 3546.4676 3260.1333 1969.7093 6203.2186 5333.3758 6231.7519 84555.2727 7645.0211 6750.4526 5977.4134 2777.2645 2777.2645 4066.694 10591.977 6333.2709 7136.1278 8762.5438 6393.1999 4272.2502 2706.3017 10117.4282 5221.4232 11635.5747 4161.9927 8048.6269 3241.1829 4848.5202 4042.9952 2794.7489 9901.7702 183580481 pcag Organic Remediation Aromatics Other aromatics Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 13244.683 264336.6035 6942.7609 1893.3952 14989.7469 5218.5572 2679.018 145580.974 9427.5935 4207.6479 4207.6479 10045.5138 6487.5372 6993.5867 15240.5153 2470.9161 2303.7285 19613.4406 6887.6548 6326.2717 3627.9741 7302.3788 23722.6783 22372.7576 94471307 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9428.4279 11445.4387 11535.5815 17744.0305 21918.5791 5626.5782 4996.813 7833.119 21783.851 9796.8766 142462.0527 12963.4747 13083.6443 15266.7718 6667.0869 6667.0869 8634.214 22443.9703 10497.3804 12375.9661 26539.1475 34542.9157 8893.5183 44276.5133 9725.9484 7080.7289 19667.4204 9553.7241 13122.7829 7048.9938 10621.5226 12127.7107 6626.0138 10991.0224 320335312 amyA Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 4851.5887 3198.7669 4175.1286 19678.7225 3773.66 2920.3415 4198.5313 7359.1319 3408.5497 338212267 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 4873.0107 21996.3356 17228.8394 10882.299 744138.9895 30095.4029 3335.1468 4103.8671 3519.2132 65375.6247 7701.171 5944.2826 4901.6495 2762.8076 2762.8076 10511.0563 4758.5158 8217.8435 14796.9653 24200.2068 4164.7606 7697.445 3102.9416 12586.1889 6465.2675 4635.5292 2905.541 4760.2291 4519.6608 251788718 RgaE Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 4096.2912 73555.5569 158138745 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 164458.2838 48956.891 56057.8822 78936.6482 43190.1105 42863.3156 32530.2456 29865.6335 33160.5757 41047.4138 27422.1937 900806.4963 40569.7583 55946.9356 64287.3727 32620.3667 32620.3667 31972.3536 50430.5198 43396.0408 48597.505 35194.5147 52559.5603 31943.4159 29849.6515 120737.3563 35045.5694 211591.4749 51210.9347 55530.8879 26980.3693 29415.2259 29488.403 29285.2167 39423.0455 330468452 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 4241.032 2514.3268 2123.2888 6165.7658 2484.664 2560.5193 5449.1824 4299.1086 4843.0737 5586.1046 9427.5532 10520.1951 4648.3104 5964.5245 3084.2163 3946.7541 2639.7273 7245.4002 374608578 tehb Metal Homeostasis Tellurium Detoxification Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 19111.6565 9790.4865 13331.2069 13710.3939 25441.582 7574.3729 16826.7688 10302.2415 30169.9693 25499.57 368969.8978 5340.1865 17872.7526 53550.005 9615.4784 9615.4784 9104.8881 18963.6734 13289.5732 37720.5596 18446.8904 16541.4534 8632.4242 18695.9327 16956.0909 23286.6546 29479.282 16094.3253 23697.9276 4346.0015 11212.8816 9532.4037 11019.7078 85098.781 197341619 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 27506.35 42325.6069 26345.214 19285.4818 29926.1602 47379.9921 18338.8477 57618.6022 8310.0378 21352.6321 34043.6015 19901.8316 386284.0279 27678.1964 46301.8732 170096.9505 34426.8444 34426.8444 17227.6474 38869.3663 44422.2461 45549.351 49954.9422 17034.5841 14395.0564 59357.9264 27131.6974 269673.8818 101674.8736 28556.7133 35373.2434 21299.1785 24284.0318 35334.936 15478.7394 175273.0987 260221692 alkj Organic Remediation Other Hydrocarbons NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 11188.2856 11942.8716 7046.2205 23108.1784 30800.9502 4244.5101 4452.9658 3956.2277 5408.1299 121143.9315 5059.7879 157509.4138 8355.3177 9917.8074 13013.4532 5339.3982 5339.3982 6221.172 12781.5781 8419.1332 7907.4065 28670.0423 11869.4345 19434.6806 4845.9891 18709.2311 5664.0661 21302.2732 8371.1025 11409.08 6000.9318 6247.3872 9528.1202 5940.8822 11024.1503 255296009 ppk Phosphorus Polyphosphate synthesis NA Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 60069.7973 6839.5334 8162.0567 24317.3584 162707986 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. DNT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 171818.4011 48944.4112 137950.4725 22886.6786 10294.0764 43178.766 31985.6151 64494.7687 16847.2103 135716.8748 23308.7446 10766.1657 103271.139 33581.8988 43754.7976 28632.0921 28632.0921 17332.5781 63863.7773 19440.3484 91847.4047 159785.4115 98509.2105 39317.3748 55149.8798 91575.208 37825.1755 70464.7909 58928.6201 67627.9965 25191.2551 52777.0459 37350.9204 18760.2993 62213.3234 184195709 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 46534.7775 42825.0308 18098.1534 42253.4477 24038.1069 7099.8547 45977.5596 15607.426 29046.4201 89290.6801 30071.7333 403760.9953 52965.5052 66650.5011 54141.4869 104369.1634 104369.1634 58153.8061 35481.546 27552.27 35603.033 104011.4256 30877.6018 28106.2879 34150.1383 68234.2594 90876.6174 73753.0592 44765.9428 87748.2822 18876.5938 28465.8984 37333.0792 13949.5877 41077.5287 211588246 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 85669.0705 13152.6951 5308.9567 9388.5949 41546.4132 12224.0711 56927.1312 15181.4338 42974.7153 500070.9172 9727.8979 7330.631 29568.7716 15562.8659 15562.8659 9050.8513 20181.6586 12227.6868 33457.479 20592.904 64810.971 41804.9291 18865.6246 14971.8338 35552.171 54228.7374 32107.7614 22624.8448 14920.4883 26421.4346 58010.0897 40643.0428 26957.0106 302457985 amyA Carbon Cycling Carbon degradation Starch Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 9149.2424 8681.4493 3910.6169 11948.2527 2831.2523 16615.1816 12024.9294 3874.9524 3874.9524 9136.7956 6545.1977 4066.1012 17188.9259 6340.3332 4160.1636 2443.2262 126627073 arsc Metal Homeostasis Arsenic Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4848.2035 5809.1873 4383.0393 2645.5908 5434.8308 6691.7111 2779.116 67429.451 7252.7921 5442.5087 14615.3115 4209.0944 4209.0944 8049.7657 7901.4642 4359.839 5705.5993 8829.6869 3167.6805 6114.6308 3709.5176 12857.9696 5435.5648 7978.4683 3447.7707 3176.4024 3821.6974 2676.4204 7911.7795 212527670 endochitinase Carbon Cycling Carbon degradation Chitin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 87557.5627 20722.7342 363321.7723 6171.1776 28842.5789 11689.3032 5498.92 4711.4985 2143.883 8102.6249 31850.4455 11457.5792 173550.3761 14608.2304 22076.29 21111.7911 16302.8649 16302.8649 6826.469 9853.5538 9574.2295 4191.4631 25541.2452 42348.5188 9017.5707 8081.8854 17944.0279 15341.0754 19843.7683 9947.5936 17515.2318 15981.3071 7294.6424 8203.257 19341.7533 10563.7523 209401968 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24376.8141 14985.3624 10815.185 15889.2322 11509.4318 11586.5293 16418.3823 8768.4402 11591.1691 31816.466 24143.3934 207977.1448 19073.7982 21956.9593 177722.0213 17803.4525 17803.4525 8767.9284 97834.8452 21897.2247 32856.0822 31538.7126 13333.2833 22361.428 19332.954 59125.274 37411.033 56825.486 24808.6799 49679.8502 12921.8523 17605.2948 22651.2516 39962.0635 22956.011 374389360 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 47349.0516 416697.341 798705.3085 144627.8419 41488.71 7626.0035 17869.2562 72855.2581 40505.1232 142099.2895 35823.7593 63829.1109 522482.1471 46543.2794 226133.1274 41802.2956 35944.392 35944.392 42987.3408 56301.0752 53726.844 98507.5156 119580.746 59543.3327 37131.7863 39312.7387 40495.5767 23149.5864 143120.9835 69668.1267 54650.6703 28157.2409 35963.9572 45444.6243 17935.6738 96625.3645 112358843 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus aetherivorans I24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus aetherivorans; 22648.4196 2798.7513 2467.2858 6802.0196 8416.8164 3671.0139 6082.0993 6159.8456 6184.8334 6184.8334 4885.0391 5216.15 10193.0608 6069.8619 2470.3623 4778.8054 7012.5002 2245.125 299739871 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4327.1496 8526.4053 8665.2786 2154.5016 13911.2186 1972.2334 5677.8574 2170.5843 2582.7724 298593545 cysI Sulfur Other NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 51385.1402 33313.9182 55054.624 8045.1209 18567.3631 25532.9791 65007.9385 40962.3541 37284.2508 46488.5991 277959.8963 29082.1985 50144.773 62648.2054 104384.5844 104384.5844 22836.7536 74698.7179 34523.0695 126317.5777 39271.415 31262.3354 25529.3576 25651.7788 28639.1588 71470.1125 79465.4955 62004.5925 50344.4917 25591.8844 34863.1795 43016.067 21532.8703 166044.4654 325538089 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 19793.85 24016.7157 10595.8234 224132.6189 39862.722 10045.2422 33894.3158 5059.3793 14292.3455 16558.7245 12796.3308 251956.556 18693.8925 24750.2634 14727.1326 11935.7073 11935.7073 8655.7675 26320.436 27810.933 21738.0916 39706.2338 13347.6916 8897.1747 11266.0196 32421.3118 13255.0095 42708.6709 33462.7527 31611.9704 13787.108 14785.8782 30016.9313 11223.3403 15952.5975 119483752 pme_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9082.6056 6168.2312 11118.3718 9637.5919 5268.471 2461.8939 7337.9648 6026.5415 3713.3604 91651.462 9002.7484 8212.7723 7102.0886 12946.7559 12946.7559 5667.2064 12138.6647 8055.9947 12934.0888 17091.3894 10367.2463 3923.5599 4213.4847 10012.4395 29073.7213 19435.4006 9433.0411 10796.1519 4817.3065 6862.7007 173163.8015 7204.9026 9718.776 14090318 dsrB Sulfur sulfite reduction NA Desulfovibrio longus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8494.3645 5271.6132 65351.6586 7915.3788 3854.5785 5502.5625 5510.4644 10190.6676 19047.7634 18986.5492 145981.2679 20770.2928 10248.8448 6552.2753 15008.1782 15008.1782 6422.2233 26760.8888 17703.3702 9956.3961 18899.0344 4490.3379 11170.7532 11332.5272 22505.6329 28133.6831 42781.829 10781.7448 19937.2417 7081.047 18255.8469 16750.9953 8788.3142 40135.1997 365893948 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7412.769 65263.9895 7477.7359 10012.1322 4732.4974 11965.7578 44585.2189 10605.066 11530.8297 7866.8142 130744.5241 10657.7191 11369.3774 10912.6462 6253.6631 6253.6631 10574.9866 53059.7858 10926.7177 29775.7826 24983.1323 14866.8092 6566.5178 7830.8598 67389.2971 8221.7537 88197.1395 31525.1813 15562.6587 5438.4475 9596.8123 8344.3486 6738.2145 18490.8961 93357652 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6743.958 22635.5051 4315.5782 6870.0671 1174048.9057 6197.9427 6182.6221 6550.4286 4815.7259 4815.7259 9733.2565 10968.9562 16063.3387 3686.0609 5059.6715 69912.132 2910.8979 10337.524 8876.0781 7276.0329 3540.4555 4029.0874 3504.6573 4592.5646 8053.6617 329851655 alginase Carbon Cycling Carbon degradation Alginate Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 31191.2115 6230.9806 384761.3548 18758.7379 34775.8821 8968.5859 5821.2973 69532.1349 69663.5402 31917.6796 124850.4609 17500.9069 30296.0179 44035.7488 14021.5984 14021.5984 15097.0079 36241.4986 131533.7236 116484.3604 31516.4081 57334.9221 167244.3028 18714.9499 72850.8709 12951.766 33697.73 32752.7495 52122.1251 6994.6237 13898.3795 20127.6319 37745.0066 14428.6857 365265833 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 5744.8088 3119.7485 13062.4937 7691.3423 2028.2539 307630580 tehb Metal Homeostasis Tellurium Detoxification Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 12250.7077 7363.9927 19452.8701 4479.2959 3116.7915 3979.3615 3213.0213 3121.0674 3121.0674 12585.5205 6811.4137 2975.8302 6175.3771 2163.3089 32889.0874 5542.0867 5019.9038 2906.9484 15127.0259 2445.0825 170143341 urec Nitrogen Ammonification NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 13174.6265 11418.9891 5336.6428 12762.0816 17125.3535 23434.6897 9671.5791 39997.4916 4828.6457 8466.6497 35996.3711 41117.9107 135432.9661 9889.5758 12040.366 58994.7095 9038.6856 9038.6856 9515.4071 13831.5208 8334.7583 13288.8646 13479.7026 10211.7055 11191.3795 6306.5319 18368.0074 6026.1663 20811.6219 34990.7107 16476.4393 11104.7581 22094.8145 11386.4903 8445.6948 9850.2194 72121507 vana Carbon Cycling Carbon degradation Vanillin/Lignin Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 21931.6249 13992.9177 8908.185 25182.4798 22649.0014 47384.2022 15143.9304 26666.1602 52408.2902 329625.9378 30423.8629 43798.8962 18224.676 12952.0898 12952.0898 9732.3358 27254.8094 19163.7605 20136.5782 36129.297 17012.118 13958.5375 25234.2143 20005.2866 11654.7885 43056.4858 19155.7892 24388.8278 15313.1389 13692.4019 23498.4893 30872.0389 18750.3394 391320812 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 81386.5199 33499.0382 27130.0834 44877.5691 11381.2041 36708.7313 21257.3173 20301.1193 45688.4569 154643.1007 17704.8341 462840.7936 22527.847 79952.6448 126645.9179 39568.9943 39568.9943 13337.1563 47725.2575 37860.9804 30246.3176 47488.5312 58771.5517 8999.7 4868.269 27439.7771 17522.0775 58895.5808 26020.2916 38510.443 12228.7801 25779.8785 24009.2933 18118.9942 94950.4791 85773453 terc Metal Homeostasis Tellurium Detoxification Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 31704.5939 17176.141 29227.4168 19684.8933 8318.4349 22297.6675 56726.3741 9600.5969 15184.0094 20771.4679 13159.5133 682094.3616 21894.6686 23329.8018 24320.0424 18889.6998 18889.6998 10829.1868 47759.4665 18369.4742 54586.5531 38002.6509 34486.5205 11556.7223 18950.5452 26613.3524 11984.1102 175031.7081 44452.6093 26675.915 14336.7256 15576.9993 36877.1966 11280.174 28142.6734 398232237 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5566.8916 7179.7122 1978.5306 3580.9181 2324.8731 3418.2985 6070.6308 2842.4285 7943.7057 2551.166 7939.5608 4023.4318 10243.5781 23969.7559 6492.1941 3406.8845 2573.7984 6373.0763 2730.6358 13189.6296 6570.5581 2473.659 4599.3736 5369.171 2602.7865 8468.8904 333809996 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 8599.6917 7701.7226 23771.0263 5845.6209 4505.5577 8292.8821 3335.2192 5832.8091 7525.0888 84345.4764 19795.25 8730.5488 9672.7113 8059.4115 8059.4115 23526.5372 21061.093 4816.6685 7827.0186 10206.7266 8060.8418 9877.6123 12979.6649 26024.3609 5021.8775 44898.7526 15687.4952 11255.2269 5997.2146 9769.9247 18763.0889 6217.8441 10950.4644 46392640 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4337.5466 22311.2497 25113.1874 21114.8987 5863.4214 5974.6901 2724.7921 17887.0096 4319.9576 3543.271 3543.271 4963.9394 5135.0229 2834.3079 6272.0225 2480.9175 12551.7756 4193.5921 5821.9157 10851.2026 7881.6816 124258879 SoxC Sulfur Sulfur Oxidation NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 19966.7371 9131.6229 33790.7008 39601.7601 38569.8437 30560.7832 37213.6617 17589.2214 12364.457 22151.9962 14711.7202 523747.8301 20004.2629 56906.838 56524.8766 39035.8127 39035.8127 13994.1743 32268.2565 16987.155 23403.221 28912.6554 12760.039 9627.9816 19025.4069 46227.3708 11161.2182 45957.5825 35842.185 40149.176 16744.4107 22127.631 22835.2947 8522.8551 14214.8333 357257025 cysJ Sulfur Reduction NA Staphylococcus simiae CCM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus simiae; 40377.4854 5726.0905 332377264 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8107.9326 5844.995 5624.512 14396.8906 9237.3138 2907.7133 4739.9799 3950.4222 5055.5118 3789.3856 79462.5931 5568.8311 6656.4671 14567.1115 6482.1835 6482.1835 3659.693 9659.3231 7102.7769 19694.8991 6270.5576 13562.1742 3294.7387 14217.7486 10502.5604 11003.7114 4473.9171 3803.957 6069.8475 4309.632 5009.146 119898274 one_ring_23diox Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 26137.5383 15557.7546 33453.9503 36985.5194 17661.2687 17007.7009 26720.7533 96176.449 25840.8241 17902.5778 27913.5945 17084.3774 660884.0743 52113.4689 32708.9108 26886.5534 15622.6819 15622.6819 23271.0014 38452.1653 22053.7317 216113.8588 34050.2422 38223.4231 17041.8988 19090.3475 58357.3755 15067.2733 74087.2426 34453.278 50444.7502 13289.1329 26969.8512 28735.0031 14453.7963 66398.597 46371035 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22723.3549 16851.432 17375.2039 26315.9817 21867.3207 5922.5323 25540.3622 31000.352 17091.722 26262.1343 28482.8732 13246.1919 672480.3208 35849.1339 31598.383 22281.8503 13574.9112 13574.9112 24823.7856 38064.6411 26355.9865 45207.4685 37814.6403 48732.9373 13733.2824 35656.1709 44815.6799 17839.6092 53955.3738 35516.1007 45035.035 13674.2666 18181.1611 23439.1554 14953.9829 44120.7287 126703742 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 26276.0663 24458.2813 15001.5636 16872.932 13100.2023 51853.6071 18136.7662 16805.9006 11414.9511 21265.1968 30950.7338 327482.9497 14640.3865 23253.7288 16531.1911 13885.0456 13885.0456 9603.0531 26668.8052 17708.6575 15138.6035 28035.5679 10689.375 17806.3285 11490.3305 20977.0834 31769.0539 45467.6462 18176.135 16351.7834 7519.0856 21656.2588 42365.7278 31382.9918 24055.7471 88701513 tktA Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 5494.5878 23172.0414 199481.0211 2848.8688 2823.2257 7886.9806 79886.5188 5158.4377 4438.195 6503.2626 3896.9457 3896.9457 4752.044 8181.8696 4650.7313 145813.5106 10037.1808 6840.1955 114548.8458 4728.7935 5509.7708 11255.4172 12036.2098 6137.7265 5536.8493 19285.3055 5101.8684 3011.8653 91782280 cdo Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 54977.6515 13071.2401 22197.4462 15604.0014 14904.315 8181.7442 16855.8294 11220.1417 54714.6011 19792.2704 16942.8974 291108.9193 24021.9338 30064.6458 29724.1276 26598.2711 26598.2711 11520.3306 31742.2982 13556.7979 59163.8125 61739.5377 108987.1261 15434.0816 25527.7817 30116.9663 15034.7366 52740.0485 29150.0797 37732.8377 8270.9695 17076.7641 41234.1072 8828.7824 28221.4058 302430902 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 36289.5587 51030.8305 14866.7817 64022.1302 13195.7336 35078.204 31689.8391 111814.9736 25498.8811 24786.8614 55810.6117 417842.9547 123069.0158 68575.8819 172612.4311 70734.6473 70734.6473 35014.9281 60400.9351 126859.3256 91175.5301 55550.9136 312865.3222 28344.8646 47399.1142 64912.9678 69950.5326 98600.3097 57411.7335 55759.2893 43129.6034 54824.4977 127425.4897 37434.9448 103793.1894 390566926 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 5746.0102 2220.8416 61680.3846 2730.6032 9123.1111 3835.4822 5104.3631 5614.219 5136.2362 4892.8744 2098.5682 8937.9321 4800.4906 3077.362 3171.3164 3306.3133 2952.0954 6007.6652 392728605 amyA Carbon Cycling Carbon degradation Starch Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 44623.4966 61592.1562 3680.188 17256.9139 4836.006 6957.091 19470.275 19470.275 7165.4518 5850.7661 2499.4751 5963.8495 7581.7869 2781.7781 9306.8694 7293.4797 9015.5326 1932.8718 13239.4867 5063.8663 22610.7809 9797.7478 220923109 ara Carbon Cycling Carbon degradation Hemicellulose Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 6309.6715 25134.1842 26649.8686 6868.1055 8429.0138 5031.8143 17728.3878 5556.0687 5479.9882 9637.0996 75469.1909 4785.8257 8090.4038 17900.7276 10996.3805 10996.3805 3268.9015 15591.8115 10621.6376 4888.4827 4038.7191 3706.0339 4986.2307 8124.7419 11788.9673 3779.6515 41325.5589 12118.7571 8785.6649 4849.2232 6157.9117 8093.2423 4141.5127 338902724 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 5225.5785 5149.7551 2677.2247 5967.4853 4447.4531 123965.0448 4768.3842 3654.8107 8148.5118 8098.4726 4930.0978 7064.3424 3226.3217 7634.8859 2382.8764 12094.1 5602.9242 7953.6483 2812.3768 3142.257 2667.5878 10192.5503 169016205 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 37445.4189 70909.3948 12450.225 21311.0899 27245.5064 25972.3331 26964.0762 20439.482 23788.8556 44026.0479 733294.116 47822.5137 103225.1053 24773.8009 38406.8048 38406.8048 20165.1977 51642.6976 22632.5377 20137.8917 378315.7238 38088.5154 14022.1243 21398.4956 37182.1165 22150.9068 139344.5051 62399.4192 46390.4965 20281.2031 50559.2049 51100.0807 34492.9727 54174.3022 238727959 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6443.4594 4928.1112 2658.2803 2391.8341 2502.8383 4516.758 4276.3307 2995.2095 123506.3179 5345.9728 5574.576 2982.9528 2982.9528 3015.7665 10495.9869 8864.6886 5072.3929 7442.0235 5837.4988 4358.2853 8867.451 13038.7334 9230.0664 10128.2373 2897.62 5902.2527 4400.562 4238.5397 6068.2234 66801911 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 72622.5147 16496.2545 25343.0453 11359.5863 7878.2617 255184.7554 17185.1069 16090.1485 44534.3047 35425.0052 35682.4908 25167.4975 529180.7959 32802.5566 54492.066 99535.8472 22481.4036 22481.4036 23761.0956 72258.0617 28902.715 133922.3851 54275.3114 95373.9396 41662.8907 43568.439 20997.9207 37482.8554 84741.9279 18782.1281 41163.3498 16670.6475 29248.4114 71895.3742 25158.6253 57943.5869 296927482 SoxC Sulfur Sulfur Oxidation NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 4557.1396 10373.7708 29032.7168 4496.1237 3259.378 12878.7012 5471.3387 4256.0129 15140.3019 7820.8803 7820.8803 21973.3459 12207.834 4781.4161 4762.3725 2297.6128 8574.8865 11609.5715 3151.7597 16798.6746 8080.3195 8218.2066 6091.5812 5901.8194 17591.0275 5716.5779 294970976 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 11093.3157 22871.1021 14490.4031 9362.8995 3553.5343 5881.5315 8531.8342 8320.5351 81308.6888 51183.659 9206.1421 7915.4315 4696.6804 4696.6804 4502.2189 17377.8921 9095.1674 10529.1 17359.9116 7907.4071 6942.7479 5570.0368 11102.1935 7074.1053 16803.1625 9951.1972 15846.7652 5451.6633 32005.7391 8454.846 5036.114 105219.5268 381369993 terc Metal Homeostasis Tellurium Detoxification Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 9869.1005 4463.9475 1751.7151 21530832 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 4328.8963 26215.0365 2726.1207 2464.5297 2332.1093 3613.191 3613.191 3294.4996 3378.2286 6774.6209 2306.635 2837.604 5775.1617 7809.5305 4985.1433 2604.7813 3031.2 2045.7527 5187.0718 258571131 ppx Phosphorus Polyphosphate degradation NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 10556.8775 16452.103 11344.0557 15803.9137 7242.8811 7907.6754 6244.5754 24543.4758 718418.7979 12963.2752 9598.6683 8492.5356 16453.055 16453.055 5182.4242 81733.9418 3629.81 5986.328 9856.2412 25276.461 3531.5508 5461.5729 8527.2325 4899.5921 23366.6738 8369.5824 12485.5748 4204.7413 5937.0478 3916.2903 2794.9577 14690.5255 508289 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13099.2967 10387.83 17108.0952 8723.8433 5160.0628 4692.2206 74833.7406 12434.3286 43277.5766 10391.563 21237.3137 183726.3282 8915.0225 7856.8281 26443.4678 28486.0933 28486.0933 6232.5603 14969.2538 10519.062 10876.4316 9138.5826 7158.8434 8223.9676 13595.4623 22982.7837 30233.244 10960.4938 20408.3216 8505.8467 8915.9956 8704.8476 7362.5595 179643.1241 333901936 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 11908.3567 7435.2795 8158.8489 8936.2617 12091.3057 4121.9132 8181.5288 15050.5661 12983.6008 237432.581 15258.3777 9525.7202 12596.3606 50812.9102 50812.9102 9608.9149 9787.0373 12972.8202 12336.2017 12774.8545 6329.137 9266.1191 14094.5939 10939.3681 10275.6991 22071.3591 25690.2954 14664.6598 7532.0439 11809.9234 13663.8516 5800.5333 8215.7187 404267229 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. CCGE-LA001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12664.2283 13456.5421 11357.4313 5399.105 4862.1811 6148.0086 5201.9433 15870 5555.1571 81437.6597 10633.3818 26702.4832 11112.5034 10765.3449 10765.3449 5568.1268 11916.6119 15117.8653 8358.8932 15351.4314 3306.9474 18683.8822 24087.0512 4359.1519 19396.517 13911.967 12155.1814 7324.6776 37865.8175 10948.2002 3359.416 9042.6984 218665071 phn Organic Remediation Herbicides related compound NA Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 50203.3654 16079.5585 108169.3862 50875.9242 66390.6311 11867.9867 223345.4693 48000.4564 65880.0646 63569.4441 111558.2302 37090.1317 1291884.294 52967.4975 50134.8889 40386.7497 30725.4225 30725.4225 31600.4725 74675.3672 50766.8015 53357.3321 112421.8099 92325.9933 35349.3098 28690.2854 61416.9458 88517.5261 190092.0525 56142.7715 67818.7448 42564.7132 45390.1688 47957.145 32886.7819 86711.3711 329114515 fccab Sulfur Sulfide Oxidation NA Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 10880.3045 10541.4438 9705.5363 8923.3143 8933.5141 71952.9893 4556.7348 10036.5311 9547.8948 5643.4153 231796.4952 17819.3279 15666.171 11314.4435 6104.0585 6104.0585 6618.5095 19329.0164 15453.8657 44668.1353 11418.9482 10802.8799 4963.9805 9206.9507 15554.8838 64148.1897 26158.7147 9575.3606 10841.2393 5595.2949 6984.2946 10408.7069 9883.2057 16384.3614 85706704 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 4924.5147 6359.5912 5244.1926 6754.3626 3272.9284 8079.9261 5551.8131 6538.1787 4621.799 8051.2942 2514.5631 2773.1712 4723.8486 343922.4979 1892.6767 3307.5004 4740.9799 260422525 atzb Organic Remediation Herbicides related compound NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 9183.571 18305.1422 9968.8851 11476.3537 5523.3386 6951.1546 4940.348 18244.9571 8844.3942 112844.3834 14219.4648 7162.9689 22740.5499 12483.0888 12483.0888 6891.1856 11374.4845 7998.1375 23215.1846 17364.555 167112.3983 4325.2768 12016.1859 13372.2844 44696.5356 42771.3101 15787.9132 25415.745 4708.1238 17442.9022 7750.8939 7520.9934 26504.6521 304438332 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 161516.7937 12568.6503 39838.693 6432.8421 71364.7916 11625.1601 72595.1633 23874.3579 21607.4712 12561.7835 131939.3353 47771.728 163047.3853 9747.3327 37055.5368 24867.7278 29788.7862 29788.7862 36035.9548 67060.0719 10427.3637 13100.7392 56687.1128 74502.1597 24182.4141 35117.1149 19243.8427 30748.9026 69649.0335 34739.9752 19534.6683 6660.8071 23410.61 35047.2625 14591.0645 9638.2495 354615120 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 90150.2237 22968.3375 9423.3307 7384.7434 13513.8843 5605.9805 5222.644 14183.9364 6618.218 323120.3821 5997.1412 6693.3274 5134.9859 4649.0016 4649.0016 3815.1519 15767.1051 8496.0968 12011.1112 9793.7171 5703.5545 10076.0976 18321.2758 4364.0047 16470.014 10033.8825 12224.3585 4345.4419 13634.7739 6510.0226 2635.2289 6858.6017 237858255 GAPDH_Parabasalia Other Phylogenetic NA Metadevescovina cuspidata superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Metadevescovina; 369978.5373 13531.5549 19843.4529 51214.5202 25037.0202 18120.8373 15757.4659 9761.6211 155682.4608 36262.4232 23216.7804 10708.9492 23426.6462 23426.6462 9015.694 26527.1465 15375.1836 13525.8162 30581.7482 20888.8041 10007.5089 12989.9627 47044.7518 18015.4847 82199.0596 22983.394 30525.434 18269.2049 43746.2747 18551.3949 121714.1449 12603.5908 61378767 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium iliopiscarium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 9168.3089 7998.076 4235.3504 22287.0965 7060.1027 5665.7413 3791.256 4461.767 5449.3725 3392.3833 201974.8403 6907.6599 5741.9483 4513.8502 13800.6202 13800.6202 4575.4109 8285.6054 6269.0903 14147.1871 9473.4493 12656.079 2450.7029 3961.9308 9699.138 4938.647 12355.0516 6798.3185 7714.1263 4815.5235 4610.1219 5425.5319 5114.2096 8506.3166 340347839 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 4263.8769 4140.0037 34931.1215 3469.2733 3689.8462 5352.4581 26689.0373 28183.2252 71007.8595 11401.4445 10150.7971 7038.7565 5581.8349 5581.8349 9958.9415 7917.7525 6766.1899 5948.1894 11553.1903 99129.3072 8101.059 8491.1751 22012.8073 5464.6745 5780.8214 4245.3127 5927.6475 10983.1865 5449.9517 11042.1166 296268859 amyA Carbon Cycling Carbon degradation Starch Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 95383.1301 32150.2453 75295.5858 120677.5195 82648.7176 33134.1224 73226.8951 96357.7654 55849.948 62656.5471 84047.5021 72276.1314 1951343.1481 110559.0091 235627.9707 130137.868 67738.6028 67738.6028 59572.6246 109602.9061 71951.7473 93188.0405 120955.6001 85281.6533 64351.4969 49266.2813 87581.0438 80364.6101 184618.0268 92720.781 107068.2597 40739.0677 70108.1885 68441.1479 37219.7053 88729.5175 339500717 amyA Carbon Cycling Carbon degradation Starch Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 29723.7363 49267.4493 4012.6839 24628.3122 5972.2063 11840.0293 19594.3613 161614.8444 10318.1053 22021.4262 74168.8169 67224.1605 67224.1605 5282.1506 21706.8029 7878.0517 12870.049 17405.2003 4718.6735 8215.6294 12277.2286 18347.858 27357.6243 14436.0066 64676.2984 7861.6831 3383.8345 10983.1337 43126.7883 10090.1816 5658.8759 116634809 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4982.7246 6465.3056 4948.2572 270210968 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 1166916.1337 16547.6981 5516.4912 9945.0803 17385.7681 12491.2586 7385.1467 6363.3061 4921.0594 49831.1375 73756.2055 146953.5301 9086.774 10036.4362 39303.8103 11673.3259 11673.3259 5079.1358 33890.5325 12974.579 9873.7873 9874.3617 9585.205 5743.2201 23308.8413 29382.3415 19373.0015 85538.5469 12201.3424 9126.3488 6544.4662 12692.2365 12055.5607 10753.1304 31429.0691 255342524 amyA Carbon Cycling Carbon degradation Starch Flavobacteriaceae bacterium 3519-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 33909.3918 9347.4579 195353.9789 7615.4976 7523.788 8913.8672 8818.3021 11734.6802 15051.6023 10947.8028 9520.8001 212369.8066 12143.6335 21128.3838 9943.4064 25641.6918 25641.6918 35810.1652 18340.4913 10496.3212 16054.6154 20537.8063 22203.5139 6385.6424 13689.5418 14910.5942 8698.7334 56234.0284 11800.9948 27090.6614 23451.7936 10881.01 10699.6664 32723.0191 31027.3656 334137943 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 39299.0047 13273.9773 9870.415 19822.629 5700.2706 12334.4796 13701.1717 11638.7263 14423.4252 22160.5137 14210.2617 250076.4048 15734.3057 13947.9562 25388.385 16580.0971 16580.0971 9588.38 25777.3353 14600.0761 18849.5247 21645.5513 24025.5515 8642.9856 8112.9585 19545.5639 71307.9459 32678.2591 12243.9723 20388.7719 8884.1538 11095.5541 16196.7939 8571.9842 41795.9835 262201363 cysJ Sulfur Reduction NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7235.3922 9021.2335 5481.5413 7464.9452 10042.5853 3494.0502 6010.4555 11588.8107 250724.6508 13971.6941 8565.8852 14243.0706 7044.1734 7044.1734 2451.9522 17647.0564 5838.6158 5302.0206 8652.4378 4622.3465 3954.6596 5477.2093 11635.341 3922.7683 18287.5863 8102.0415 8638.7851 3101.6527 6073.0725 10837.5948 91241.6399 11514.6112 290962153 urec Nitrogen Ammonification NA Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 241673.0127 51864.6809 684752.6098 20872.5138 5788.4309 309788.155 54970.4856 59940.6498 77412.4726 98538.2846 99448.3092 5704737.9102 124317.6302 95018.5983 85861.8879 106511.6847 106511.6847 49161.8099 99333.1446 40925.5963 215176.4453 145506.9559 267806.5427 66838.1913 77289.336 77215.1631 81601.487 159738.8823 138723.5391 102759.4075 61394.5197 94472.4089 132897.2539 58680.5962 52726.707 354613995 alkb Organic Remediation Other Hydrocarbons NA Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 21861.8134 5406.7347 11174.3511 11142.217 85941.4877 4878.0218 6226.4241 9311.4245 20597.333 7332.649 133785.4715 5441.1335 5845.6671 5098.6115 5706.6633 5706.6633 3602.364 13131.8628 6345.2451 13539.7476 37880.4449 133793.9035 4543.7502 3506.6187 29398.0897 6651.5314 55775.1034 6411.544 9902.0834 4945.3842 6627.5121 7707.0387 7262.5362 10584.1724 359290126 SoxB Sulfur Sulfur Oxidation NA Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 141672.6441 28447.599 594330.3096 30855.3405 37784.6838 352830.1285 11750.0621 81561.2545 20901.173 30106.3925 37004.3111 54477.5922 987632.3698 161740.5849 105720.3225 131180.3731 81361.2647 81361.2647 16562.2027 110743.7768 20098.3172 98518.9525 28310.8943 48548.7267 23577.8924 53320.8177 63369.6036 20318.4909 74458.2324 39550.3201 55522.1781 17600.2799 25736.4856 32831.2667 14302.3361 34988.9565 390411676 amyA Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 16540.6735 28959.0518 5817.7068 6780.3599 8637.4175 46937.4631 7162.0524 8294.7033 7771.6115 698873.6908 9588.9804 9982.8735 6127.4308 8029.5717 8029.5717 10500.1629 21907.2732 12530.4819 15563.1671 24042.534 11074.8874 23259.112 6893.6955 31844.4839 11094.4594 22501.343 16196.6076 9737.6291 7999.1525 7576.02 13431.5508 8154.4446 32594.5231 339503723 aoxb Metal Homeostasis Arsenic Detoxification Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 17100.83 36124.3118 13339.5977 37583.2393 4691.7462 22585.1308 62440.0647 9562.4457 21069.0837 26934.1221 485500.2852 11069.3069 15978.8391 31277.9869 25147.0248 25147.0248 9905.8419 23391.4183 24527.8342 24101.102 21682.1569 14799.0217 30558.352 13213.9365 14240.83 14169.1958 31187.5479 24772.0553 29140.3021 31576.3507 40770.2608 26930.4834 85999.2758 28974.4085 45386179 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 11236.1956 89743.9053 1055728.2703 77667.3548 13646.2925 8583.5611 12664.9393 5172.1905 12134.6667 13815.9925 8859.6377 219396.2508 36080.1259 12104.2867 15879.3513 26224.7259 26224.7259 6180.86 26955.2818 12250.7381 7544.8199 16073.9149 10666.3213 13044.7741 13174.0707 16408.1325 16867.8758 25041.6818 12023.5511 143942.7781 5291.8881 12214.2849 23867.6925 9631.5311 37955.8698 58002781 ppx Phosphorus Polyphosphate degradation NA Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 145603.4997 90788.2335 80205.4617 132138.6122 111930.7257 25760.1586 86679.7283 95099.0942 90443.4949 148222.8656 152165.2456 205297.5156 2482866.5949 130453.2288 116888.0568 174266.8571 163388.1756 163388.1756 71847.7263 125323.9022 78492.8613 146302.732 168821.1989 123979.2527 50359.1065 90596.0929 96060.7075 77161.9042 177465.547 66954.4727 114665.6285 46835.4655 72588.2657 102246.0109 75094.957 151589.1062 305856502 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 136727.7359 2599423.5646 10611.2111 1676948.1269 7127.475 54043.8336 6651.2246 55704.2241 30479.5481 493653.3115 15825.0376 7750.9241 25169.572 25169.572 327717.8354 348279.0678 18561.1556 14352.9325 26663.4029 11412.598 21647.7142 70147.4095 27085.7153 108300.4703 173535.9184 155357.6279 94218.9248 84204.7918 252217.1487 138938.8714 10716.5283 63081858 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 15221.2839 13728.1046 11235.9828 11696.985 4527.6265 22543.5165 26671.1129 6602.6593 27174.0865 16253.2212 100627.1402 10114.7231 11653.4049 40474.2453 13558.3798 13558.3798 7152.2876 24846.8725 9016.3963 14528.854 36356.8898 24143.4535 7863.2584 15495.7848 12159.4145 13201.2941 54196.2506 7462.8865 12280.4372 7898.2326 11932.8805 14092.3222 6641.9902 104120.2135 319764810 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Alicycliphilus denitrificans BC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 7417.0407 7094.013 19579.521 40964.7659 8337.1777 4630.2026 6165.0901 20361.0584 9457.0161 7233.2583 20604.9558 83548.7138 7950.6532 5075.2862 18039.5836 8028.1096 8028.1096 4258.7213 13287.6325 6809.0229 14761.445 10266.6234 6973.7378 6505.6136 7972.3532 11062.108 5414.7328 24478.9028 37539.421 11628.6674 8186.7659 7146.6125 6201.9451 5620.4506 43382.9542 167523389 hsp90_Choanoflagellida Other Phylogenetic NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 21475.8608 18918.1138 41612.8905 37032.7349 15166.2431 12440.2032 54929.955 5587.103 34875.6855 35093.7987 35937.977 374717.173 50087.1565 33837.4249 53996.9274 35264.5685 35264.5685 21873.9671 42970.454 24432.9344 34661.9175 26735.0272 26964.0193 16452.0907 42308.1128 40603.8407 26975.3317 101396.7484 49382.1549 144229.2459 30909.3452 30475.1578 27455.8721 108046.3944 55105.8869 300779640 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 5518.3364 13755.473 8522.567 4741.7172 1937.9267 3745.2323 44459.0213 26096.2473 111205.9781 6374.01 5879.1844 18559.0609 3223.4034 3223.4034 6114.7651 9862.4776 8837.862 8195.0248 10638.094 5457.0071 3964.9556 6451.0217 9182.3655 4963.4859 13787.2184 6896.9564 10821.6713 7629.0421 5336.8178 8151.9709 5111.5772 11505.9046 1004217 RgaE Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 19644.9488 14808.1619 32554.0044 13227.3659 9588.7362 10586.8873 45344.7979 53323.466 87160.9862 21895.107 31106.5361 599597.9329 9819.2653 19752.5018 48275.0352 26036.1424 26036.1424 13934.4729 48657.3653 22320.6045 15525.1848 21965.0833 36859.2095 19971.8597 20575.1052 124339.9839 124955.579 110127.9001 44244.784 43669.609 10176.0597 24290.6518 25629.4454 25467.9269 17397.051 334144013 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thioalkalimicrobium cyclicum ALM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 10581.8024 67944.0657 10306.1807 9484.434 5387.0886 4792.5104 3488.0872 6558.8673 6006.5744 5114.1075 78750.3369 16091.04 18311.1896 4122.1207 4122.1207 5492.9479 8049.6051 8605.3007 6897.1982 6149.0989 9278.3288 3346.1743 4571.5629 8998.0388 4437.4372 14526.1205 13233.8996 6495.6348 5484.3817 7681.2311 13041.6984 6205.7534 6595.1832 323365778 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 18215.2624 10254.5451 22514.2389 6681.6529 8833.8187 6561.7584 3148.8701 5644.0472 7078.5914 7024.153 200678.0089 15287.3486 12041.2771 11678.7797 8332.0564 8332.0564 5585.4921 47822.7821 9587.5281 13645.149 9763.2876 8231.3924 4718.4534 8668.942 19279.6606 6086.9641 21328.184 32940.881 30195.9068 6516.9935 8958.6237 6174.5978 4718.3505 11489.2113 302466204 cpna Organic Remediation Other Hydrocarbons NA Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 9170.5016 1959.4984 365792.747 3208.0758 4565.9749 7587.622 7587.622 3440.082 6855.8222 3064.0546 5789.8147 2567.3691 4774.8656 4874.7646 3079.1619 3333.0763 2406.9827 5118.823 66801983 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 10792.8379 18464.8105 130165.7656 30586.5425 4601.6441 17706.3531 7180.0546 11432.2485 9156.5975 253436.5754 16127.7071 16588.3242 27918.3576 201256.9074 201256.9074 5008.9801 26899.1107 29936.3189 8914.8039 12088.0087 40535.2476 2720.2838 15130.6548 33658.9504 9270.5139 47323.1416 28349.65 25726.2869 13524.2395 12249.5645 13083.3909 8669.5053 5937.3479 392243826 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 9071.1345 2971.4922 2846.4812 2510.7686 10440.0409 14774.6848 9734.5213 82961.0313 8334.6266 5003.0327 4704.6099 12453.4813 12453.4813 3454.5856 10517.1069 9494.4414 23750.8453 7540.3802 12994.0239 4641.9898 3727.7613 9732.4252 4048.933 13911.3358 10528.4102 12107.8099 3036.6203 9214.4683 7807.2964 5174.4728 9360.8407 351645555 bph Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4761.2465 10828.6825 13004.8752 6543.8162 60351.0944 65454.4035 7475.4259 5729.2505 5642.6569 78062.3459 5412.4507 36988.8608 5484.1148 5468.6785 5468.6785 4811.5306 32368.9689 5944.3731 7447.4242 7088.8894 9087.7074 13992.448 7296.8268 3677.7374 17825.1094 10612.7491 10528.5413 5205.8636 7996.7449 8136.7967 11214.6831 302423694 bph Organic Remediation Aromatics Aromatic carboxylic acid Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 6254.2339 63995.2885 14132.0097 12098.7556 6667.5325 4077.2903 7657.0681 9264.8096 6014.5625 97707.3574 5874.8943 15542.9629 19539.3211 11330.1909 11330.1909 4669.7902 10665.5502 8868.4015 3662.6855 10319.9523 43651.9445 7309.9007 5972.4563 11522.1754 9826.5686 30936.9857 10624.0311 8416.5431 8521.8486 93239.326 11917.3422 10500.8792 11145.7535 118465384 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 5317.5915 4466.3819 21044.6698 3173.0452 4513.1201 65300.6085 4432.7779 3976.9508 2423.9504 2423.9504 7170.4677 17013.7916 16862.2195 4134.7762 15634.4404 8335.87 20629.9152 4829.5929 3087.0066 94496283 ppx Phosphorus Polyphosphate degradation NA Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 6717.0383 9560.6907 3633.3531 4641.6547 2330.642 4452.895 10279.4668 4085.5722 106997.4283 8018.326 14065.302 3861.1378 3861.1378 3422.8654 12253.8113 5698.5221 5215.7278 10520.9658 3924.1708 5338.8114 4651.9694 7436.9917 3528.7857 13710.3719 5301.3505 10979.9156 5336.4516 4414.7623 4164.6857 3452.0112 8503.1909 389877953 phn Organic Remediation Herbicides related compound NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 167425.5634 14549.101 70882.0136 1310799.1855 70098.5487 45304.5526 22298.5305 426209.4708 16746.1867 36795.6679 27736.5229 23134.3311 1782996.0958 43738.1663 59067.67 52269.9553 37589.369 37589.369 29165.2238 47172.4852 30523.139 58204.7973 50501.7057 50590.8301 166093.5216 28220.9757 679438.2057 231574.0959 71814.8825 332673.5257 44924.1516 18763.542 34251.0046 38739.5883 317338.5922 144947.576 190700816 dehh Organic Remediation Chlorinated solvents NA Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 5288.1598 11586.3557 2679.3052 4806.5685 3930.3623 20968.3586 219994700 tehb Metal Homeostasis Tellurium Detoxification Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 43496.1548 25568.7231 4372.5503 15234.2338 9500.9167 100152.0755 9599.9593 11723.7783 9218.3398 30672.3383 39458.0658 256582.8653 12236.9674 25345.7969 17942.1143 193552.9467 193552.9467 14335.802 22038.1752 15214.0992 118037.2834 11940.9211 9674.2245 25307.4483 18432.681 49776.2363 13860.7491 69702.2893 23864.588 36238.8703 21319.8977 15161.6151 42712.047 199728.3661 14514.2668 94983273 silicon_transporter Metal Homeostasis Silicon Transport NA 34315.1239 13772.7169 6107.7729 14427.9485 11159.3127 4182.7436 14639.5205 10503.5845 43165.4852 10073.9768 29188.9193 110195.7919 6065.1192 32576.6462 16709.1251 4787.5694 4787.5694 8230.8367 17770.0556 60246.8666 33201.8572 12381.5236 12588.8562 14142.4819 7921.157 24782.5541 12425.0101 40426.7792 25424.2754 24300.9973 7805.2382 11071.8446 17023.8056 6894.4292 9835.7067 240142534 chrr Metal Homeostasis Chromium Detoxification Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 32568.3494 213718.8331 30714.4044 12079.1931 3449.8677 12881.4802 13009.6481 11814.7702 10425.2813 18273.3257 237442.347 15557.497 10601.7915 32999.5445 16338.791 16338.791 6266.3312 30353.8768 18555.5692 13427.6697 14051.8228 15853.8946 9471.1157 12663.1398 21246.768 9267.7349 44748.6858 20354.6241 35403.2408 9090.5739 14179.6443 19632.0518 11210.5491 19684.7342 110612589 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4061.3474 9142.3126 2161.855 97165.422 3300.5488 7090.6869 6633.482 3946.2437 86880.2025 5844.508 3996.4063 4281.1355 2791.9459 2791.9459 2407.4762 8783.4397 5607.4893 8258.2649 6993.6924 19121.5969 2090.7005 7671.3361 7909.1236 95041.141 11603.7223 6622.6965 6018.2015 2378.6818 3899.4992 5227.8234 61490.6192 4976.8667 215437189 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 3907.0763 3658.4099 3313.8362 2708.1089 2788.5867 78891.5139 2754.1383 5961.4112 3922.0939 6671.6845 6675.8322 5330.5889 2446.7459 3964.3121 2035.6238 8492.5944 5744.1006 4083.2295 3084.5572 3691.9041 2771.7554 6777.731 126739596 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3671.5705 103766.6017 4106.5313 2550.0829 3992.7098 8135.9331 3193.4953 66660.3686 3963.6314 3524.9096 6988.0212 7169.8032 7169.8032 2495.4771 12956.545 5247.1301 6040.656 8464.3972 11222.077 3703.7907 8562.9194 3269.2343 16857.4492 5825.7876 7350.241 5327.4484 5516.4757 6359.902 14414.63 9689.7409 146191339 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 245916.516 31871.1555 66452.064 67047.1426 133034.0073 41978.5365 47591.3445 50885.0273 48847.1309 60445.8387 115734.9177 75964.8116 1455009.6907 88893.6927 142717.1229 95778.3054 58947.2947 58947.2947 48016.3689 70415.9155 70182.3882 121765.747 171385.9065 86578.6326 53117.4014 28878.6903 80407.7543 30136.0827 110293.1061 587030.0332 84101.694 31227.4338 35774.4677 39805.6688 56504.7336 126354.5965 192359871 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 29009.6651 4309.1866 29076.7155 4484.3653 5448.716 6413.8821 7418.6789 6559.0041 412802.652 6590.4214 116798.4081 12145.5605 5182.1178 5182.1178 7564.4132 14896.0207 16040.3374 4035.0104 16614.927 7725.7499 4611.3128 9170.1124 18497.653 85636.4499 19195.1796 11455.9715 16371.3411 3464.3219 26773.0928 12475.7801 9269.5814 16490.8402 164562256 xylanase Carbon Cycling Carbon degradation Hemicellulose Annulohypoxylon stygium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Annulohypoxylon; 17367.5478 14996.9226 9010.2735 13840.9896 17645.9814 9932.9623 8951.2035 12170.6902 18624.7838 56756.3543 219837.3039 20816.8597 44174.0621 8728.4303 8609.0706 8609.0706 9487.4996 21482.716 14881.9868 31223.4659 29278.9322 44265.2434 17456.7343 7109.0108 18977.9997 12437.0671 32837.7342 17183.4635 18047.3762 4988.5017 11432.6985 13454.2124 9214.4098 44148.6251 358451407 linb Organic Remediation Pesticides related compound NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 16455.388 440553.3251 6061.041 8036.2104 7268.6315 36978.6958 11518.4769 8304.6721 10204.2579 8446.2304 176805.6898 7786.7013 20794.2725 9886.6006 17805.4398 17805.4398 6090.8152 15634.0449 13480.8942 166939.9174 9580.9586 90299.6345 6889.7215 11174.1515 90937.123 28434.0355 15760.8692 10575.4745 13441.8816 6718.4499 8247.0933 8933.5271 5268.2102 9484.0191 163736593 tktA Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 4543.7705 4047.7241 8350.7469 4017.2905 5750.9064 2705.8113 2955.5065 358751823 xylanase Carbon Cycling Carbon degradation Hemicellulose Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 34219.1299 8875.1083 11263.5983 6134.3344 76057489 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 25982.1064 5454.4022 6917.8033 4563.4472 7321.8457 33405.0268 89185.2288 4623.6699 6307.2533 4763.0332 2445.0143 2445.0143 6605.1716 4546.0404 5021.0952 5141.8064 2222.8968 11881.5125 6541.4255 1993.924 2936.3132 3406.5723 2335.4104 5559.8014 110831199 vana Carbon Cycling Carbon degradation Vanillin/Lignin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 3793.6789 1783454.4714 4892.2009 37252.7214 3254.7637 7419.4464 7430.8127 6350.5135 3088.4197 141507.8969 5904.3149 7750.0383 8759.4195 8253.9335 8253.9335 5587.7169 3849.7261 7631.0225 5581.3551 14590.791 4947.9432 13024.1935 12952.6944 3769.6469 5599.222 5762.9938 2550.4489 11066.1763 319414020 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 62227.2078 26280.5435 13881.7785 93848.5667 7544.0584 20532.4559 227807.4376 32607.4252 30286.1553 45389.0735 31917.8547 532648.6562 27641.3244 28339.5344 42330.513 94122.9793 94122.9793 22040.0986 46510.8505 14149.9391 65190.0001 25710.9491 20882.3284 44802.9035 39525.607 36716.4162 33852.0461 199723.518 31789.4547 66916.4409 10176.9307 27957.0605 49005.6216 59454.9414 26779.9636 334136857 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9382.0378 7348.5207 6802.2054 9442.4138 2018.7756 16752.8726 10246.2756 5506.5563 199763.5485 12455.6771 11070.0323 4549.7567 4549.7567 9015.3551 14176.5094 10477.8884 11929.4058 45128.1025 14066.391 5710.5027 6306.5901 13836.6262 5533.1151 33490.6175 11414.4442 15609.9269 6317.6987 14154.7211 10382.8726 6063.1204 13478.915 302696029 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 20667.30875 6778.2378 15281.1794 16137.7436 4695.5243 29537.4639 8232.0623 98574.641 8300.2499 23360.1785 21527.67065 21527.67065 5501.0286 17128.68585 17713.65395 40636.20095 7596.1076 8768.37755 9556.129 22887.87525 12679.1079 12633.91075 5127.82195 10038.11465 10984.9075 4021.00535 9967.65 358242475 linb Organic Remediation Pesticides related compound NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 50658.8892 24205.1297 307269.5778 35596.6901 9249.3692 12142.0391 22760.647 12564.2944 19447.7021 28075.473 38320.112 6090233.27 20833.2251 37693.6121 47942.3944 162406.5936 162406.5936 14739.1555 101607.6495 19621.0032 23576.0202 127987.6732 42295.7171 26872.3755 33521.1431 72644.3651 21339.5878 86041.3292 36150.6025 52678.4829 13790.3534 29590.4184 38533.4518 19983.4121 18176.2873 357203690 atza Organic Remediation Herbicides related compound NA Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 10618.9382 9849.5573 6814.5602 11487.4835 8847.527 8939.3061 8225.1628 9979.0746 12248.9773 5948.9424 249785.3908 13205.5668 14548.407 7141.4087 5980.2644 5980.2644 9066.7649 20443.1522 13915.3416 12764.282 19322.9049 20015.2633 7089.3605 6123.8643 14302.3337 5605.5915 20655.08 10195.6034 14756.0051 6646.3732 9143.7647 10307.9706 7366.2663 21627.3698 328808661 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 19023.193 5765.9737 13548.0276 5658.2088 4649.7294 6762.8811 5848.4312 5659.1449 4652.033 12007.608 12722.0486 12722.0486 11441.4324 4461.0429 4848.7403 60847.5923 6538.9033 4023.7528 4001.5089 7470.9515 5090.2199 32470.7071 8954.1659 12834.7417 2251.8391 5756.9775 8072.1583 6486.0256 5220.1919 346991888 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 34217.1455 4985.3602 58526.85 1970.5615 1970.5615 4286.9056 7326.2413 10347.6977 86570964 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 44162.9059 50454.3394 29783.1913 197911.3152 51489.0818 29812.6187 46926.2451 64227.1453 131299.7601 172762.3444 64488.6451 543029.9665 61086.2613 60094.7191 50118.7895 54701.6731 54701.6731 44159.624 81742.9855 63503.62 112633.4275 71174.4097 257723.2106 28431.9814 56484.32 72999.5041 68576.5134 137038.9658 116369.3587 80456.8163 32391.93 53927.3081 40814.7703 47164.3957 159298.056 150036068 soxY Sulfur Sulfur Oxidation NA Thiocapsa pendens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 8566.1088 6065.6908 14547.1604 32355.6766 13832.1631 7923.7293 6061.1484 5042.2504 25005.8371 8292.4809 9473.4771 141628.4759 7504.228 20150.6448 30582.6378 9709.7504 9709.7504 7809.7692 16442.4335 10331.6071 7496.328 8547.6627 7327.4533 5152.7251 9026.9597 20724.1845 5047.7019 16178.7109 18882.978 18905.4751 7545.1826 8588.9243 8092.5604 5376.6053 7869.0822 295438164 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5402.5995 9764.7475 5805.7983 23985.5028 21774.9437 5589.7334 6727.8865 47835.6243 20313.8637 126368.8826 5705.235 11948.8561 5656.3995 5656.3995 10060.5173 16968.3726 3947.9102 9011.6162 12742.3441 3214.2434 15173.711 11167.5244 9438.8613 17032.8407 9799.8346 12527.9817 4922.4407 9772.6806 8979.3657 34735.1897 260575807 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 21891.1778 36282.9715 14972.8009 12698.2371 11452.3035 13024.2495 13763.1386 10035.3098 26622.0217 19731.8439 18106.6623 396475.3716 40823.8075 22461.9993 98388.1931 22034.819 22034.819 11813.2048 36325.4298 18011.7338 19399.7262 49211.4492 75640.3622 13531.4657 17560.6229 39527.5647 27107.0741 53511.8 16425.1565 27415.0847 32938.3437 24668.441 18276.5862 12434.8442 32869.7402 227112721 pme Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 78524.3607 156675.3346 4857.5445 7400.7034 3315.4463 5150.1552 2723.7264 7717.6114 3797.7071 94224.3904 7361.5774 12916.1273 8704.5478 8704.5478 7959.3849 10487.0946 6243.0707 5812.8815 8625.4845 4471.7245 4359.4992 4939.6395 15126.6624 7127.6867 7964.1074 2565.9335 5319.5366 3912.7866 3322.4065 4897.4511 84498215 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 54895.3113 54706.0537 20765.4138 58273.5135 15998.3504 210134.0696 14994.7813 15822.4486 32455.0848 51048.3385 38557.3407 345096.8621 74552.8948 18449.4657 83282.0358 30521.739 30521.739 9862.0464 41439.6793 20304.6215 19835.8688 302921.8122 13259.1638 25628.3835 23983.6014 38975.7154 23188.92 53803.1116 68981.7579 40215.5775 14875.8639 39686.7034 29117.8707 26367.322 17482.7537 334337175 xylj Organic Remediation Aromatics BTEX and related aromatics Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 53670.5728 13731.3925 9369.6105 25730.032 9695.688 56053.9056 47611.51 19492.0221 21039.8174 21787.7492 53220.087 1443039.7846 55518.7295 424588.3286 97877.8858 128076.4766 128076.4766 444875.1109 57849.357 12812.6974 39328.344 32569.1506 46757.2702 42935.7213 25627.4645 32912.6361 25737.4166 42032.3953 25276.4189 27864.2975 62649.6109 49336.6459 54257.4469 28208.0795 16111.0259 332377298 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4979.5151 15317.973 8138.4507 4752.8931 10345.9356 5572.3294 18126.1946 8801.1114 9095.5763 16138.6955 5125.9799 130003.6321 12267.9806 4897.3088 4881.8275 5667.2762 5667.2762 5728.6838 20518.2509 9841.9431 12106.2405 8682.8246 32427.4293 6361.6892 7560.6775 10780.3261 6299.4906 22800.4505 13311.7381 15509.858 5864.7762 11865.0265 12377.4484 6823.9056 8815.6468 154150739 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 18036.8163 22349.1406 8852.8724 16431.7563 25399.9269 9672.9921 8771.9748 10789.9221 22387.9471 11117.4056 545855.4747 27583.3724 16593.3136 13138.0992 9750.0626 9750.0626 18288.0051 22080.9631 15356.0865 27167.2351 91935.4697 23054.3577 11172.101 9074.4212 16242.9004 8383.9164 37328.2087 21088.0748 24191.3098 7264.8574 17760.7377 14117.6874 15204.4256 20780.9276 226243761 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 6924.5868 5767.1909 10837.757 18388.8875 9495.706 8269.7398 9525.8307 4852.2149 7954.9159 7803.7544 4489.9686 251256.2575 11150.742 12389.2812 6712.6422 4713.3347 4713.3347 7439.3137 16841.8157 29550.0741 39282.7917 13345.538 12361.2311 10938.7014 7100.3995 14459.2826 9481.1269 19236.179 6618.5135 14134.3556 9388.048 10244.7806 5959.7107 6095.7787 10276.92 46307864 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 37645.9601 10983.0863 11097.9063 29303.675 14367.7252 8970.8951 13030.7447 10063.2356 17693.5544 16227.1125 14032.3657 279565.9265 26674.3528 102376.7587 12047.7603 24135.4515 24135.4515 11499.2142 29991.0864 31000.3757 14041.423 26360.5882 20288.8924 9853.3043 38572.3521 37874.5477 12795.4798 51844.3958 27405.8886 27059.2477 10863.4461 22507.4256 21599.0919 124421.8869 22913.5964 75197040 terc Metal Homeostasis Tellurium Detoxification Escherichia coli HS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 515921.0797 6469.1329 5119.4753 8611.5563 6522.5275 3822.3999 182677872 PRI Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 5121.5516 3660.8376 2877.5294 8841.1496 57964.4304 29405.4408 11239.4359 8444.1297 3063.0284 3063.0284 3210.8969 26239.0009 8617.9699 7565.0432 5979.992 7116.5447 8609.4889 12036.2038 18193.7954 8044.6877 18656.4752 3021.2052 3276.5157 4383.1289 4533.2917 302468177 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 8648.9076 16162.3222 6343.0978 10117.8636 6598.329 8137.0071 10159.8302 13553.1808 9669.1223 15777.519 8115.1701 296922.1536 12074.3334 10284.8732 8502.4934 9331.2594 9331.2594 10800.3955 17927.5496 12870.6002 11559.0702 18277.7083 15229.5045 8446.138 9810.659 18377.9694 5697.2992 28354.5574 15231.9939 18321.219 5712.2604 9131.6963 11151.6349 10481.2352 14818.7682 315588320 xylj Organic Remediation Aromatics BTEX and related aromatics Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 8569.0872 19485.6726 11736.6258 41193.0728 132442.6938 5277.3587 12350.6021 2317.0563 13325.916 13499.2901 13018.8728 1074967.1447 24482.6959 22081.0744 8665.3007 18265.5707 18265.5707 15076.0572 10201.9607 12589.609 8055.8111 92032.8337 25796.0889 9251.6357 7877.8915 15470.4061 10686.4477 24002.9955 16736.5491 20438.4778 4586.6735 16404.4193 17751.0932 9826.4711 12855.9097 83943988 linb Organic Remediation Pesticides related compound NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 8540.2481 18048.3578 51138.3889 221220.9418 6133.8209 22360.1109 2590.102 10670.9237 23087.9185 9249.3038 412201.6757 15282.9797 26026.4173 35612.4388 22249.2615 22249.2615 39666.5843 21871.4633 19619.3462 7296.2676 7992.1733 7745.1044 5387.1631 15406.4647 62850.3953 15389.1138 34520.5954 30415.1836 33846.8834 12387.392 18004.1362 18916.1139 6434.1122 15860.3785 379651046 amyA Carbon Cycling Carbon degradation Starch Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 22081.7481 13955.8253 7939.9528 6566.1958 6289.9108 4812.365 8027.9058 11727.6485 24973.3132 359399952 cysI Sulfur Other NA Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 8569.4407 11233.7185 3782.5536 7801.171 3757.9707 142023.5997 4694.6417 3282.6462 3282.6462 5434.0167 4114.1648 5764.8398 12099.2279 7690.3162 3177.5565 6617.9417 4891.07 8875.4098 6349.9664 6134.7762 3724.7183 3832.4785 11650.8397 2138.8476 18150952 badh Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14857.6045 10653.4785 13016.8788 12822.1079 8715.3644 13296.0605 10450.923 9786.6379 15407.9357 9354.8433 281994.7328 14607.6973 97150.1276 8330.8432 6156.8963 6156.8963 11025.3661 22475.7815 15974.3329 18059.4025 16341.7241 31817.0445 7807.0325 9165.2458 27520.5788 15053.0585 33973.3526 17303.8669 21597.3312 9921.7725 10271.6593 11380.7559 13083.8558 15723.7312 139004179 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9050.9971 4545.3832 7669.8269 2679.2721 2760.6126 5353.6623 10667.5687 3492.6137 142709.4835 8849.6294 6193.8395 8785.5976 4986.9817 4986.9817 2697.6733 8554.1324 3823.4799 6474.2182 4332.2873 5441.5705 4061.7019 7421.2479 10058.3362 6467.1541 21836.3455 9904.5965 3193.3194 5153.9554 3700.321 3000.5845 6150.2994 109452552 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4506.8871 5218.4129 2148.2315 2858.7724 5183.4953 5950.4615 109290.857 4602.2935 6148.5267 5216.933 8956.8548 8467.421 3945.0737 8681.2672 8176.3599 2319.6651 3467.2496 8644.9262 2451.0067 11326.5656 6268.8632 10784.2434 3127.061 4374.7502 5438.1463 2099.6787 9768.1768 56312125 nirb Nitrogen Assimilatory N reduction NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 16924.6967 13469.4076 6986.9369 11200.4692 5119.1107 13335.0055 38470.6349 6944.1864 6114.3347 9281.3676 17103.5092 165753.4608 5732.2032 21390.0432 7349.0349 37465.6867 37465.6867 13608.9175 10102.0065 5509.6316 6815.7496 7562.7791 5227.8287 2989.4575 15448.4883 30843.065 6728.5348 15365.9217 9428.9745 100093.5097 6328.1998 5710.0529 6807.1188 12499.7646 18517.9302 124262290 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 4635.1257 9723.9345 2529.5536 43963.4574 31641.6248 6032.456 202961.1184 10048.7238 8163.3044 7724.0024 8885.3185 8885.3185 5777.4564 15319.6869 3894.482 10997.5358 7997.764 4132.3703 6988.1497 141943.7422 3174.3418 21172.473 3676.1098 7113.2011 2945.4924 6183.0223 12258.35 383640455 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 23883.0077 14216.2977 24901.4231 25246.1528 12328.9687 17010.5812 12303.5481 20217.6052 40534.7985 15323.7413 425545.431 101352.4006 17567.3321 15849.4134 13039.5418 13039.5418 151413.1843 52141.4145 31015.0216 31446.5189 34044.9245 35535.7225 13848.0249 12472.7671 23498.6648 10002.1511 58991.6519 20504.3006 29544.6258 11036.7778 14491.7406 23270.6956 13422.684 29702.7236 291460354 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 5891.6654 6213.8711 7704.1144 51550.2026 3170.3357 3170.3357 7551.2877 7966.0739 3920.8855 2172.6524 7201.2538 11804.731 2055.6203 3771.5253 59896666 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Rhizopus stolonifer superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Rhizopus; 5365.4353 2539.3314 68077.1775 15442.4879 8439.7379 11739.3049 5436.2346 5160.2239 85910.9515 4398.1581 35048.4545 10820.7762 5673.3227 6463.0604 3534.4985 10838.2088 3040.3349 6259.1266 149122188 phn Organic Remediation Herbicides related compound NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 23840.6654 8831.3141 37894.3111 27697.9918 8357.7714 26798.5257 19408.7218 7280.0755 23211.366 29099.9653 21882.0095 214655.0563 25352.8395 49400.9541 36794.9663 34403.6404 34403.6404 7445.109 34874.334 20529.7032 19586.8245 46277.6581 39514.2652 12642.8554 24909.299 32609.7621 23346.315 107150.2465 57657.9582 56929.2498 13347.5967 18471.3679 53449.6199 23959.6574 36198.5495 24421301 nirs Nitrogen Denitrification NA uncultured organism 48780.963 12549.3319 22237.3222 28316.119 57235.5699 17665.7373 13382.3068 31913.9289 53281.159 39796.4334 37645.0785 50401.9415 253795.1594 28317.7311 140084.2773 58097.2491 26143.1024 26143.1024 33020.3174 62277.6366 24938.6731 55638.6012 47524.0153 45397.7382 35925.0338 24658.7338 44507.0421 41227.9602 97632.6226 44486.4851 64998.2046 53307.2801 46510.4775 38388.2132 52038.1415 26322.8032 94311748 cysI Sulfur Other NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 36191.8934 40040.7151 4502.9758 5170.7589 16779.1671 5458.1065 9942.7485 13342.752 54489.5763 28794.5932 44604.9247 16802.5804 336259.896 19108.8293 20825.4458 321596.5865 28745.4674 28745.4674 7218.2205 24090.9455 18244.4207 11680.3378 17965.9427 16639.2087 8081.8151 23996.8709 24844.4378 19586.7046 38730.8047 25221.0183 27280.5233 14067.7085 22436.2862 17910.9174 13961.2566 15869.4944 84510149 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 37402.036 15148.5427 38198.6924 55345.7105 47080.0936 36384.8747 68524.2431 22945.038 41030.3245 42650.5301 111609.0067 927894.9321 89542.3015 63415.117 68619.128 52297.2812 52297.2812 16291.5282 154878.5978 40872.8912 41949.076 35440.7072 19048.7749 14185.2426 20271.6461 60850.147 54644.6155 72734.222 46463.9777 67174.6818 20626.7946 50887.017 33631.0094 12347.8304 30529.6008 228618663 merb Metal Homeostasis Mercury Detoxification Bacillus cereus R309803 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 11674.9737 24563.1894 5878.2177 13385.9063 21212.9624 9787.9449 7295.6768 3023.2515 13455.7123 11338.4116 4380.7245 219192.6065 12325.3931 8809.265 12198.0922 9825.8822 9825.8822 16858.9851 15835.4428 11767.1811 11662.8937 14953.367 11331.8705 5274.1259 5376.5075 12365.7047 6705.1683 23388.3107 11602.189 12408.5846 4333.0472 6728.0771 9911.6384 6020.4742 126467.611 685212 glucoamylase Carbon Cycling Carbon degradation Starch Athelia rolfsii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Atheliales;family:Atheliaceae;genus:Athelia; 5015.0931 17057.8495 2232.077 1913.9888 3485.4065 3622.461 2897.3637 79793.31 3805.1586 5600.0898 3352.5383 3352.5383 3824.6653 7399.7004 4227.8121 7056.6347 6896.3824 4901.1249 2494.9874 3412.9044 12360.4616 7555.6283 9346.2582 6679.0937 7763.4597 4121.5156 4030.8562 4044.401 2171.6251 5572.9797 385677083 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 34636.5394 195129.9794 15765.2932 45718.0572 14748.8569 16906.8696 62256.4918 36853.2578 21403.6922 118634.5995 31269.4046 557767.7014 30298.7396 36557.017 44271.123 74803.4047 74803.4047 18650.9804 76320.5264 32672.4376 41243.4216 150526.9713 47366.9477 21216.091 23009.7424 30803.1762 41389.6433 53722.9052 87794.7902 69965.7227 18396.9699 25308.9702 50260.4191 22853.6599 34402.5685 2627153 xylg Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 10381.2935 14198.3199 6915.7433 6168.7582 8440.4506 23058.0721 8084.0487 17091.9979 8310.5456 207150.0518 18254.2725 23375.3117 7787.3058 6451.8418 6451.8418 26081.1219 25903.3587 12673.3628 12233.6437 17918.6008 14538.1067 7025.2941 11663.2797 20950.9055 11170.5621 43115.0353 24077.3198 26472.6171 6157.0416 23345.7847 18719.4315 5895.4622 14978.461 159045346 soxY Sulfur Sulfur Oxidation NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 12450.2648 11325.8993 17760.6626 8051.6761 423646.8753 12019.9815 34043.4098 122473.4706 11387.8998 19799.9622 17398.0823 27341.3413 220654.511 7857.5202 23256.1779 26631.3668 19880.1706 19880.1706 6754.7026 20228.8929 15081.0904 17686.8034 30585.7334 19933.4418 8609.3573 20017.0304 19982.7984 16337.4193 39244.8999 117501.0324 18715.5946 15685.9743 13757.7113 32808.7062 23010.0415 9154.2669 284821835 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 113848.6744 11515.6526 66175.0757 21704.0598 69513.1971 35768.4808 18553.3291 331089.6631 41084.1297 52985.3631 183994.7118 89456.5493 2123462.4784 42303.3054 65752.4648 121465.4749 54836.032 54836.032 103358.5845 146815.9096 102184.8704 73759.9522 207526.2792 54204.0584 37938.9363 60193.1225 216722.3611 72698.5148 205638.8691 57732.6583 144633.0971 24410.9657 42528.9521 57779.7907 28289.4638 78330.8393 297559229 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 5998.894 3522.6038 16431.902 9725.6409 69467.4334 5855.4355 3723.9855 7761.2057 2635.7657 2635.7657 2967.2135 7215.1414 8380.8113 12707.6018 8507.111 5218.9384 2826.5724 3182.1327 6047.9582 4205.3065 6600.1894 9979.4639 2476.0855 4771.7807 4335.6254 3884.5872 8322.8666 115390945 cmci Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 41563.7226 27663.757 26682.9683 71405.7906 6163.4932 26486.8049 55438.7627 23288.304 30363.6652 37613.1532 41560.7238 764222.0451 36637.6032 29303.9121 31693.969 27209.4724 27209.4724 21805.0005 115148.1946 35700.5417 42812.2438 43096.0413 50345.2899 204253.8434 19261.9356 60000.4695 22873.2326 104773.3743 53319.4261 43305.2577 19001.3103 28639.1256 29074.4654 18291.4211 50081.57 386846665 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 79603.0825 41250.2862 62952.7449 469050.8111 139640.0328 45376.1698 405737.0215 469982.8423 52695.2585 65882.8082 297501.2761 87337.7661 2308876.7552 204681.805 104337.7594 105385.3144 152847.3684 152847.3684 89631.8824 115805.5334 81549.6771 205489.9571 177618.3444 108293.3907 75948.0576 87588.2713 168441.6022 65824.8765 391897.1281 252123.0382 136516.3385 48653.5029 141016.2405 165994.7045 193957.8223 228741.6949 118377803 actin_ciliophora Other Phylogenetic NA Tetrahymena thermophila superkingdom:Eukaryota;class:Oligohymenophorea;order:Hymenostomatida;family:Tetrahymenidae;genus:Tetrahymena; 6875.4916 23383.4186 38794.6219 4856.4832 4264.1523 4341.999 5530.3971 4975.422 6765.4749 5931.6059 45136.794 4423.2999 4423.2999 3975.3231 11573.8024 7093.7095 16721.8473 22630.1293 8356.2108 6188.6066 9036.6364 8399.1774 5042.5582 37853.2786 9892.4447 13180.4093 8927.3579 11830.738 6795.6553 6376.9308 9405.3752 84778383 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8078.3847 7141.2108 6677.8381 2894.0441 4465.7274 3192.6445 8408.6958 19259.1434 4699.8491 116177.3839 8026.975 8258.5404 4515.4321 5301.9291 5301.9291 3910.365 12347.5226 8824.8714 5616.9566 9849.4029 6627.285 3912.8994 4302.6816 10193.6607 3083.4586 16900.8319 3922.3403 8555.1222 9387.0099 10384.478 4866.8153 4470.8172 7686.7145 257069374 terc Metal Homeostasis Tellurium Detoxification Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 5640.2082 10145.2127 5660.6974 15455.6084 11600.552 6868.2558 12496.4665 4062.3633 8107.5758 8745.2243 5701.4404 205145.7291 10024.8471 6959.2462 8769.351 7596.1176 7596.1176 5040.5371 11603.4767 6585.3455 12737.6551 13618.727 11027.6227 8034.1083 7092.8312 12311.9433 8261.5375 26254.2847 5487.4888 9998.1106 4603.3325 6818.9575 7132.7535 17159.4669 18024.8415 377537802 gdh Nitrogen Ammonification NA Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 43497.8524 19888.8336 275588.9492 19978.0805 105965.9026 38982.7042 28237.1779 52808.6371 61023.5381 52114.6092 61717.7131 71352.9597 871270.8221 31837.1868 70277.7009 71433.9216 42932.0446 42932.0446 33750.8318 69269.635 37760.2243 69996.0302 70627.248 228580.9572 65905.927 61740.5666 52699.5601 44471.3785 169153.7095 73491.0757 73559.9152 40644.596 62852.1192 45685.4342 36521.0475 86881.2858 328803688 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 38389.8869 6418.1367 10720.1561 2749.1428 2918.0149 4767.635 4570.0105 69292.6786 4576.4872 27606.0166 7849.7913 4448.354 4448.354 6058.0539 14568.6615 8527.6127 5331.7983 51047.177 2766.5737 13548.2248 5430.6867 10763.1878 2841.4367 3851.0589 3808.6944 13348.3392 325914448 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 3874.3185 2073.514 10570.2983 2687.3283 52151.7764 7804.4768 3500.1803 3500.1803 5566.3018 3508.4024 18182.9416 6303.4557 8575.6573 27083.0543 2904.3049 9079.7687 3902.2446 4696.8113 13480.2049 320534422 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 54994.6307 29641.7556 15695.3391 334757.0611 13869.7945 21082.99 381996.7703 16030.7724 43158.7037 61874.1687 41568.2261 837090.8969 88208.2926 42611.4582 56595.2668 74300.4778 74300.4778 26570.9195 60720.8283 42354.0273 72395.2179 48841.4305 41320.3905 44608.7397 35556.4351 44784.821 37057.4725 114772.2817 35874.941 51467.4024 58992.1692 43099.3838 75015.4583 116047.846 31182.2486 112214149 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. DEOB100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4865.3728 11326.1313 4781.0455 7999.9642 4669.5578 2580.5218 125232.9831 6059.1181 5992.0975 3293.6349 3027.5079 3793.5568 9416.1798 7340.1535 7627.3694 2590.0598 3523.0597 5259.4966 295055293 arsc Metal Homeostasis Arsenic Detoxification Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 214152.0139 386837.7469 60887.071 163571.1982 71160.5815 265711.617 187108.6415 81617.8292 221896.2938 182177.799 174159.9231 1989963.763 237407.1753 249235.4005 215516.8914 201901.2013 201901.2013 242131.1137 171877.3993 132845.7096 311831.2491 237352.9252 181418.7774 167215.9921 144070.9839 184105.1997 106790.7281 465307.8022 135271.2878 202169.9512 223560.1257 167467.992 148821.8385 139296.1182 189722.7631 109452528 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12756.1946 5584.8983 18410.3512 4850.4372 6501.8926 9888.5945 13722.8769 65410.2219 26489.218 12395.2609 200171.021 10323.9022 11430.2823 7108.8294 5381.4762 5381.4762 6860.8537 21448.5184 10596.4572 8719.781 11900.818 32647.4041 6416.2298 5928.2531 13458.4118 5705.3845 36821.951 15151.7126 15435.1605 8616.9472 10442.371 13696.9033 6044.9299 12838.4532 119960877 pcag Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 54849.5549 1176201.3145 359495.1122 52437.7285 27039.3826 13297.0523 43846.1336 43995.9508 70125.5498 50433.6983 120968.7682 55651.7264 1406278.9869 83675.9599 70144.2976 105105.3775 49627.7924 49627.7924 42270.6497 85703.5829 37539.3971 75820.5 342623.4056 65426.4884 36101.0216 44127.9951 80123.7422 32048.4326 137298.08 40382.6037 70125.6408 423516.6536 37587.9777 47429.0927 58321.5391 152635.1431 23015073 arsc Metal Homeostasis Arsenic Detoxification Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 21434.6742 13786.6452 925473.2951 5356.787 26167.9763 5145.0906 5957.7814 6972.399 3615.0374 4472.9399 4637.0656 80677.1915 6572.7043 6993.5522 12141.2003 10775.8484 10775.8484 10142.0021 8769.4291 8850.3266 6969.1271 8824.2244 2546.1857 3300.7028 12263.3075 2502.2849 17666.0857 11046.1438 10834.8819 3817.7731 3986.3231 2720.8642 11227.9251 126249720 suc_CoA_red_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 5640.3317 5264.9818 8016.91 3836.4536 3867.9293 6734.4118 6808.2104 5601.8169 109350.2489 6406.3651 4647.4904 4149.9448 4125.8842 4125.8842 3820.5936 10120.4974 6024.394 5156.864 7769.1016 12344.2835 3098.1817 3494.6054 9356.8009 4621.6031 12930.8686 8631.915 14132.0283 3711.3888 5648.6093 5879.3163 2720.4359 9883.2492 311887415 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 14500.7067 12384.3341 33995.3308 244825.5868 26076.0714 7199.5737 17724.5875 3231.9312 27661.1682 19381.9486 16839.1406 381284.0612 55249.4725 22579.4195 35375.4374 17699.6412 17699.6412 15877.4496 17944.7427 18939.6438 9334.076 28751.1278 40317.0534 16253.372 16373.081 39801.4173 18038.3062 56698.2261 48575.7127 43153.6924 21348.0683 16739.3564 19208.0358 7441.7372 22875.0853 397325393 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 10955.178 1328062.5216 310636.4084 14734.1494 12547.4823 7487.8881 5200.8513 8087.5049 3806.1489 67736.7227 5209.5168 5166.1001 5417.5807 5417.5807 73268.1649 89734.3307 10956.0211 3898.7693 8619.3604 4374.0329 4864.5754 8234.9054 7741.8399 49630.5477 15577.9495 13328.8639 9105.042 15546.6231 14140.3845 4880.3715 91684641 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 131579.2972 52124.3954 31761.2416 26284.2449 27086.3112 22138.3155 19910.089 57172.1783 37232.2914 38038.9925 39265.5329 42444.4063 462894.8553 26439.9851 57486.2001 31610.979 45365.749 45365.749 41648.9255 74618.7175 33273.6405 140251.933 66992.8737 20948.2165 34425.1047 45561.7428 51430.5609 27780.9564 60458.8142 30615.77 142125.0381 19486.6762 52973.109 39986.8917 138361.0234 44826.48 421953150 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15727.6104 6873.3004 18073.3749 3304.9605 4155.2218 3167.8575 8939.5292 8754.3361 30691.6005 149257.5225 22803.4807 8438.2825 7716.1768 4881.7408 4881.7408 10767.9438 11882.2781 15526.9141 5141.3831 6422.6827 5892.5199 12342.84 10292.7616 8672.1089 14746.669 6960.719 28288.9152 8721.739 15089.0126 11270.7896 18341.9668 4739.1551 116634785 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 77123.9734 6013.3986 669091.4593 36586.4662 5058.6564 5729.752 277900.4139 5735.1211 12711.7999 12229.6581 8446.4481 323729.5975 10065.1948 15550.6559 23550.1627 9682.5141 9682.5141 2901.3353 14631.0686 7858.24 23036.9184 43607.8284 12920.5596 69572.7555 13171.9462 271911.8693 155164.4475 22111.2441 217848.7229 20287.2611 7117.1334 6184.1792 9623.975 131067.3969 41885.715 305675948 Sir Sulfur sulfite reduction NA Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 310495.3152 221244.3378 36747.102 1539202.676 36847.3063 21426.6832 50412.187 440920.7872 20229.5967 60197.1204 107478.1029 49805.9033 1436404.6455 244761.3251 177865.6176 65356.754 72779.9992 72779.9992 43731.8017 69806.0317 28754.8451 146808.3158 112990.3089 106981.6092 187071.8124 54207.5924 1112826.7509 234881.2023 120359.7503 316493.4339 94827.6954 70780.0985 53190.0477 89531.2733 401699.0164 1012795.2303 299793296 pcag Organic Remediation Aromatics Other aromatics Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 36522.5602 20912.8585 7617.6323 10734.6363 8419.2477 12053.076 14517.9069 15682.3362 18754.1351 17102.0516 171168.1822 11352.5948 16307.3143 13757.487 13969.7563 13969.7563 16124.0718 82909.7516 11535.1241 15337.3801 23471.5722 54772.178 8235.3156 19532.0864 9558.1565 9261.1559 27915.7381 17039.0683 16458.6172 8648.4242 10606.2923 25929.8543 11815.6505 9494.0034 89952479 endoglucanase Carbon Cycling Carbon degradation Cellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 11634.8302 11782.6221 9645.7884 4568.6666 12091.7728 12665.3674 9428.5594 11270.4368 8626.9876 5705.6273 418465.022 16554.6906 15638.8273 10074.0988 5477.4737 5477.4737 8203.1113 21293.0213 12205.6632 13357.5973 22858.4819 21525.0391 11268.3122 8004.5965 16146.6537 24659.3272 8044.9787 18554.2681 8511.475 10833.8612 9987.1449 7657.9432 28177.4098 46520025 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 54888.8654 40599.6745 36223.3929 94629.9516 108057.5805 25942.6404 62559.7658 36596.2929 35508.4263 40443.0369 80763.0371 34752.9108 1023394.8855 52209.6114 65478.317 53051.8075 25424.0003 25424.0003 32715.2804 64896.4697 45667.7208 59024.9596 57887.5089 63665.257 28198.006 27048.9356 68215.4585 29042.854 113834.9073 49442.533 55054.9421 26703.0375 45815.5515 49410.7595 32214.4797 63195.7214 71836241 nifh Nitrogen Nitrogen fixation NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 4018.3186 4599.9566 2379.8482 3181.3411 2270.1969 2270.1969 5581.5056 3589.5727 63536.0517 2627.2758 7706.0518 2657.185 356690790 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20657.4784 29205.0117 11299.6178 3399.1686 6723.0049 4236.0496 10250.252 7850.1512 5731.1612 141049.6229 4921.5639 5607.0924 2923.3791 2923.3791 5975.0147 15795.0667 7299.3987 10635.7731 12663.3719 19463.5683 6830.3544 5142.5276 11392.1137 4479.3214 49669.9003 10366.1789 15146.2892 12097.4337 8078.1308 10818.6316 6424.1279 9867.8713 340777217 TIM Carbon Cycling Carbon fixation Calvin cycle Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 7834.4088 9095.8184 3937.2451 2669.8789 4572.0217 4385.2607 71514.089 4390.0253 2501.1382 2501.1382 8548.602 6816.9326 5635.8836 5899.2112 9555.2042 2665.3791 2981.8504 8864.5318 11363.1896 12978.2294 7353.6738 2558.5996 3167.4044 4441.1174 4308.1429 8461.9497 319801321 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4602.0136 4979.5842 4143.9417 5173.94 2256.9924 5053.0665 4347.1966 62053.1237 5136.1855 4294.8652 3333.0609 3333.0609 3874.7656 11025.8082 4538.1427 6115.7732 4281.029 2883.6266 4507.1216 5038.0629 2054.7788 9316.1449 5496.8245 2304.4801 3769.8067 4397.514 2485.7145 8186.3802 383819423 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 7182.0713 3567.7443 5687.4398 4183.2452 4183.2452 3982.8068 4455.4504 3608.5463 3891.8704 5861.9432 1904.2729 3263.1688 53987088 urec Nitrogen Ammonification NA Arthrobacter sp. T11-6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 14202.6612 6773.6945 4772.5926 5640.658 4069.3296 4045.5927 6619.5528 6904.7025 3448.1317 96849.3628 9556.128 5393.8821 3814.9436 3814.9436 4561.7586 18172.8552 8365.2211 913752.6542 12702.0784 11523.6414 4612.0895 5265.8772 9750.2474 4747.8745 18048.0067 4515.1309 10122.0767 3480.0614 4780.965 5177.3113 4266.9876 15335.0572 298270237 beta_agarase Carbon Cycling Carbon degradation Agar Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4103.8019 3084.1072 4373.4144 153101.3554 6682.09 2810.7211 2810.7211 2961.4298 10055.8367 3740.2889 7627.2346 8471.8859 6522.434 3408.9349 2582.1446 9598.157 9244.0011 6835.2365 2403.3189 3448.6532 4131.1527 3058.393 6086.9147 344338573 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 47210.2347 69601.204 108274.9583 40127.8358 8146.8186 89982.0104 47545.7685 85670.3532 42072.1683 61438.7648 55524.42 1213228.022 36238.8493 102646.2778 62296.8824 109295.5221 109295.5221 76095.1804 87855.743 43479.826 48327.8032 100371.0359 71816.0688 33214.2314 75309.5401 37848.9481 60034.5105 157048.8533 61378.9112 49365.418 25874.1897 108291.2086 63572.776 48549.7125 67663.54 139003062 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 27323.9749 13385.877 19898.2687 27120.7268 43921.1856 24743.9934 20956.0479 31501.7995 22109.4794 26118.8555 21167.9143 695990.6665 33370.6331 25373.8022 27550.3087 13566.747 13566.747 19367.7127 44934.7498 27301.2379 52265.8134 40143.0677 50243.0427 13067.3422 14436.0348 31845.8722 45313.7003 49703.9667 31759.2505 35937.257 14104.3236 18447.7548 18750.0449 25063.4114 40482.6649 377566689 alkb Organic Remediation Other Hydrocarbons NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 11719.7782 10611.41 4875.8576 5726.534 7374.609 14837.4672 6970.067 4581.0232 129908.9681 9098.8719 9578.9676 6186.8719 4747.9438 4747.9438 19264.1986 11453.9704 7738.8128 5890.7991 12678.3586 10137.3055 5961.7391 4911.3223 17388.7159 4188.7549 17322.1105 23248.2833 11920.543 3828.9827 5016.0328 10803.3767 4331.0663 9596.3111 302306457 Sir Sulfur sulfite reduction NA Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 4398.6798 68713.4081 2769.9431 6071.7895 3843.6486 5478.1557 6468.6653 8004.901 4648.1658 325060856 PRI Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 32162.9442 16365.2073 16251.5773 6432.4097 2203.0203 9877.5559 12206.0893 2641.4131 111748.423 7873.6732 15527.1579 9360.1291 9475.1876 9475.1876 5721.0875 13946.3925 8638.103 6844.6711 8127.2256 5627.7573 5093.6746 5451.2347 11873.8756 6577.7645 12906.6153 12104.2372 10886.9371 11610.5533 8228.285 6318.1809 3958.5277 8144.1887 134100191 terc Metal Homeostasis Tellurium Detoxification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 126294.1848 254864.1341 109877.6814 108240.5348 106423.7472 64117.2559 73904.6845 263551.6771 72299.8781 233713.9393 147818.4999 67063.6343 2074990.3846 96252.8685 97407.7876 142164.0546 75131.4704 75131.4704 325365.0405 130849.5532 75983.1256 91821.3331 94518.0937 116119.6391 51571.2391 84019.5515 285375.2975 85186.088 369684.7241 143332.331 389324.4112 61839.8139 108962.9725 112713.5268 105853.4763 202276.1794 291340659 badh Organic Remediation Aromatics Other aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 67215.4421 1840.4108 45981.2369 114097.8091 44815.4951 7049.0713 4697.4542 14155.3441 2431.5018 12608.8857 25118.057 224463675 arylest Organic Remediation Aromatics Other aromatics Methylophaga thiooxydans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 7259.1732 9168.0043 3347.33 3788.7604 3145.5728 73233.2916 4938.0644 4752.282 6124.7778 3754.1717 8975.731 3057081 nosz Nitrogen Denitrification NA uncultured eubacterium S321195C superkingdom:Bacteria;phylum:Proteobacteria; 22420.8784 22275.2984 20476.4738 12496.005 23173.2887 19606.2135 13273.2705 11938.5598 6326.1266 13854.9025 17479.1881 8951.5008 250455.1372 16802.501 13101.8255 18532.4723 9721.267 9721.267 21244.1312 21802.2401 16244.8891 30067.3211 13039.0725 37276.5034 9547.0968 9263.1349 20008.834 12431.7716 32571.3108 21104.6776 20730.1409 14518.6747 16121.3322 12655.3588 8179.2773 33818.638 56313029 ben_bcla virulence NA NA Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 78312.1675 130630.1007 28577.3266 26952.2015 39188.4167 55494.672 222909.4507 64168.3452 45344.2828 91023.0837 125983.2491 1100636.8873 51639.9712 85059.7585 273650.786 88325.1899 88325.1899 46481.514 84818.2372 59534.1656 53324.0314 150799.0828 73508.1722 37915.1533 44301.1216 58127.7655 83330.7134 223604.0244 56683.0254 177746.237 114558.7212 119189.0206 56504.7463 48363.7279 76892.5292 32307929 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 180085.3882 38786.8876 289741.8773 41460.3843 288931.4702 27969.9988 74279.6428 131134.7003 246039.7821 60716.7916 100309.2565 70844.5643 3346275.1362 430916.9852 108247.8785 118629.9937 125814.7426 125814.7426 65427.0031 104303.9511 50982.4082 91983.0735 108546.3205 258202.2001 119493.5699 82762.2263 140369.0296 68958.8799 1274381.9236 168357.2524 108715.6129 41344.8132 47886.2466 97419.3864 61782.7214 187884.5513 104780024 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 102150.4156 12985.9329 24888.1775 14246.1255 4786.2788 8678.3406 3816.0623 4810.7586 4918.822 105471.0596 7170.012 10137.0943 8064.3366 6101.4774 6101.4774 6386.6647 12972.1781 4575.7889 13425.8277 23109.47 6576.3117 5136.1655 4148.9371 4637.3662 43010.0954 13928.8214 14865.0317 4949.9322 24183.3581 4680.9637 4118.7266 8108.6702 392437230 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 12132.192 30597.839 2533.1189 5119.6304 7464.2341 21691.9111 94752.3748 23469.2577 7032.9521 28242.5789 16981.7016 16981.7016 7221.0437 12801.9833 6363.6201 5072.2768 28588.192 4784.3207 5342.3127 5964.1893 20231.8681 3327.8828 14104.7966 6880.8006 10604.2148 11139.2811 43861.8293 8211.8941 4504.0597 5640.9707 395771907 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 75153.3262 15016.2838 44667.1106 46526.6864 116823.2029 10390.62 45045.1544 54676.4819 62935.2515 42264.6662 62516.4069 31412.998 894622.3246 71426.5498 50409.1412 45880.526 22413.9614 22413.9614 44778.828 92074.0731 62899.9688 60640.9198 99866.1468 120838.5515 59480.7869 26651.3423 50219.8768 45682.2823 114789.8734 81906.5165 71199.4869 55942.2549 34834.8561 64168.1363 42092.1542 84510.6795 109715769 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium josui superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4285.7826 9861.7337 252989.8474 35917.7153 18964.6267 2152.0449 89512980 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5062.1976 5095.788 9625.4272 15025.0764 7968.1467 6458.6787 11948.083 3011.1588 3120.7259 3831.674 290978409 EF1a_Heterolobosea Other Phylogenetic NA Naegleria gruberi superkingdom:Eukaryota;class:Heterolobosea;order:Schizopyrenida;family:Vahlkampfiidae;genus:Naegleria;species:Naegleria gruberi; 4548.6049 5206.1855 6373.2615 3580.5023 4440.2637 201772.9223 3987.4417 5979.9398 2182.3264 2182.3264 4379.6825 10097.2607 6213.2049 20891.3306 8109.4778 3595.4166 6027.9789 11401.1705 5427.3316 5664.2345 3768.0645 3212.8111 2448.4796 327194728 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CNPAF512 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 14885.3729 14541.1053 17464.9931 6989.6521 15624.921 18877.9469 9092.9893 15694.9443 21073.7384 11827.1102 404703.9663 18397.7106 15555.1069 16079.7954 13006.6816 13006.6816 14453.109 36843.2684 29346.7495 31734.057 22584.9286 31703.2378 8757.3642 16961.7234 18765.9674 10369.5718 40281.7116 10465.0186 20205.3283 11336.7209 11946.6579 16740.5347 9969.9175 21229.3473 116620372 pme Carbon Cycling Carbon degradation Pectin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4572.7565 15593.5543 2491.7706 97618.6069 3865.7374 7157.1563 3929.6172 3214.1638 3640.1496 1928.1229 3626.6497 78218561 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 18677.9426 32627.2855 14310.6989 7549.7896 321836.3645 4481.7376 5733.1276 31713.119 13161.3456 181058.9638 4841.1227 7770.2597 11232.7743 6462.9497 6462.9497 3322.3182 6608.5698 4423.3409 4450.3072 36043.9386 34503.5316 2445.3257 47350.9744 9017.6321 3163.6882 23113.5598 9884.949 7881.1956 3342.9419 5819.8864 8217.7034 4340.8135 6328.6887 374328121 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 506642.0916 14052.5225 678878.6106 429637.9125 95734.0313 140021.5238 289470.2639 259091.6158 205073.1122 171307.8956 231899.1666 154202.4066 3601968.0214 173891.1742 540302.0488 332758.3823 220444.6774 220444.6774 26462.5323 767190.8453 119459.4871 1026071.7853 279477.7528 487902.8172 502196.64 395113.4208 129587.1621 136191.6629 491348.9503 419461.0533 372065.4266 244882.6467 244301.6756 212530.8419 94218.8876 1221505.3569 319895913 merb Metal Homeostasis Mercury Detoxification mine drainage metagenome 31739.8016 7613.5941 109288.3078 2300.6267 2017.8263 62439.2244 50147.592 434298.4304 41611.8995 19912.6788 19912.6788 42891.5985 169671.5432 146135.0786 167746.898 11546.7805 1061904.9802 70143.9278 32411.4772 31731.1676 81655.9969 59745.2262 28997.2747 6934.8182 83222.0705 31804.759 180359.2488 510452.9035 29160367 exoglucanase Carbon Cycling Carbon degradation Cellulose Pseudoplectania nigrella superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Sarcosomataceae;genus:Pseudoplectania; 10641.319 6810.4797 11742.3356 9147.8958 10455.8791 5674.3693 4631.5918 7916.1542 7668.542 4393.1686 177822.2878 13364.273 10124.8508 3055.3191 3055.3191 4314.416 12147.3294 10262.4638 9371.5531 12379.1103 13095.1729 6612.7069 5884.4909 11100.7528 4750.2541 14526.2071 11680.5497 13424.6749 4854.4131 6766.7784 8715.1158 8427.9466 11656.1329 377577497 amyA Carbon Cycling Carbon degradation Starch Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 92287.5536 65986.1541 21210.4145 39964.9086 13593.0231 40532.7854 213149.3113 113245.5917 107853.2804 116199.6171 75707.7301 1046488.9822 53819.3786 310829.2751 71285.4503 174807.0052 174807.0052 57989.4348 165547.2466 79799.0326 127665.4802 116515.4837 167889.4404 80817.6754 72962.1296 93367.0697 64647.5249 127347.8119 112266.933 81414.3058 73757.122 90342.9422 81075.0692 41366.7669 116472.9055 154159944 FBPase Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 25525.9283 14296.5486 60376.7516 86543.9103 18039.3832 71990.9451 22429.0341 11594.0085 18410.5091 30677.3376 19082.7221 396796.5325 178268.0363 31707.1829 33249.2227 18273.0896 18273.0896 129503.755 30549.2737 16666.341 34020.4691 18586.1171 24312.7851 9566.1394 16389.7621 34839.575 11558.1173 45506.6581 20922.5856 38305.976 12457.167 21318.1169 15304.9027 44734.4279 24893.6183 377561802 amyA Carbon Cycling Carbon degradation Starch Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 4998.0426 4311.4279 2407.0734 2217.8519 1978.3638 4334.642 2990.5888 3929.8626 4051.2233 4034.6787 4034.6787 2511.5068 5034.7471 5470.1442 1942.6687 3427.8651 2309.8711 6445.9491 261196714 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 3729.8247 6910.3563 1843.2464 4595.5002 3705.3534 81031.1727 4387.5685 3130.5512 3130.5512 6803.2112 5273.6861 3708.2447 5817.7015 2264.4675 3921.7013 7836.8357 3516.9517 10558.9318 8249.5469 5643.9078 2934.0333 3676.1886 4910.304 5249.4618 167417520 amyA Carbon Cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 10650.7145 10424.7963 9959.3087 6358.5418 35359.489 5606.4438 22780.337 15152.6597 4797.4656 12982.6044 4748.0294 10429.9676 7033.7122 8818.4257 8818.4257 5744.0416 14722.0884 5650.3084 8003.1262 16199.8578 6564.0761 19519.9175 7390.8759 16633.5048 10802.7211 24865.6473 19923.771 16535.3561 6513.7634 5568.2671 14690.6013 12734.8616 19198.8533 134142919 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17428.4487 10187.8954 4411.906 4196.8446 6385.9965 4384.9111 4483.9309 4550.2672 4501.0474 132708.9446 8165.0779 3629.0435 4717.3796 2984.1702 2984.1702 3844.0573 9040.6311 5254.7197 5003.4304 4624.137 5640.9077 2820.1014 3644.2893 9729.4239 2659.4433 15751.4745 5380.3021 9112.9971 4192.7977 4732.9039 6398.2856 3233.8542 10038.3016 398230061 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 100959.2678 15027.551 8131.1958 19550.4588 5811.2765 3335.2262 5180.2651 5872.0705 3401.9327 7036.4407 5430.4761 1940996.5519 14997.1105 4564.0576 5934.2317 5934.2317 3367.4718 8133.8427 7558.8193 18242.5077 16616.7926 15708.8056 5000.9167 7733.326 3716.2887 32425.8625 8971.9318 6380.0405 2862.7642 8079.7585 24626.0946 2302.1487 403053359 catb Organic Remediation Aromatics BTEX and related aromatics Acinetobacter bereziniae LMG 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter bereziniae; 6301.2803 7221.9419 8101.1718 3085.5043 4102.3481 5193.7364 203608.4263 4299.0082 4299.0082 15825.2647 4748.6951 12444.6424 9122.6442 8612.9837 2780.4205 3547.8607 23864.9431 4380.7001 5565.1788 5090.6637 4314.4769 2370.7644 94471103 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 297443.3454 23114.2546 292764.2338 252084.7414 156545.9856 609964.5951 130431.4847 260555.886 94881.5001 289556.4753 283670.2501 281758.0288 7341163.2138 500048.2912 280132.021 413951.8659 376960.9676 376960.9676 324406.7289 214890.8649 162304.9397 180849.787 852631.3458 138467.0887 130485.9339 176006.1302 235874.9789 301077.3395 439559.3511 280566.0964 266960.6926 294156.2981 351623.5916 227193.9098 134253.5315 928577.1238 164455536 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 37527.7267 18934.2616 131864.0492 27269.0236 44855.4927 11029.4864 41541.2395 31976.2813 14842.408 23973.0027 33919.7226 14215.3047 496909.9289 31436.5048 130943.8254 23783.8414 33020.9246 33020.9246 11116.0374 61991.4651 16670.2597 20126.9691 34614.7486 65898.6992 10541.6534 19316.877 25340.1662 11950.678 138597.43 195351.2312 29052.3316 14927.3194 16787.766 30769.8315 11548.022 21940.1466 88778030 endochitinase Carbon Cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 4852.8032 6240.1044 16352.1921 5910.5745 2760.68265 4398.9225 2193.1795 5351.2768 6751.3709 158528.7148 5468.19275 7781.66615 17995.04995 4277.9622 4277.9622 6971.0659 5885.9961 2266.8198 19752.3389 13654.8354 13705.05935 10799.0194 7920.2021 3121.2476 3065.0194 148272061 xyla Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 21386.1495 11440.9144 26518.2547 30035.2889 23984.7526 22161.9878 10353.5385 6172.2132 18604.3722 14082.5833 62802.7504 330712.624 18682.8256 18954.4166 12937.0854 8446.9443 8446.9443 14186.2408 23532.1142 17344.7029 25453.2654 32918.7071 18614.1189 11082.3588 8776.6343 20695.6243 8380.1149 36915.6948 17084.7361 32347.9384 14157.0144 18319.478 18699.1589 6458.7601 27125.4967 113733431 ara Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 5418.0084 8243.8471 6481.8981 19649.4591 9034.6061 2263.5237 223944.9124 4568.5682 4378.4318 4659.8767 3866.6925 3866.6925 2789.9145 8047.8085 4112.6418 4844.9772 4025.4661 9342.4376 8346.9074 10001.9716 10853.26 4433.0145 4081.403 5454.2257 2273.994 383331115 ppx Phosphorus Polyphosphate degradation NA Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 91900.605 21251.6987 21229.646 31227.342 44622.2163 7980.7882 23953.2212 78251.8304 37338.7743 57363.1914 67817.039 41282.6426 721414.4925 40258.7848 49587.405 57263.3418 30162.2558 30162.2558 40531.7956 96951.3898 34743.7762 32873.6722 88345.5101 315231.6742 27191.2809 73926.6498 59500.2028 67886.9123 448805.9883 39167.5442 81336.9583 41142.2269 32836.2203 60665.0345 35508.7489 153912.0331 727442 catechol_b Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 34582.3407 10970.0135 18772.9046 21659.3947 16873.9458 5313.9006 18874.7823 19442.918 9245.3719 22551.338 25496.4357 13087.4953 427579.2162 24816.5105 23752.3851 20521.6107 17777.4286 17777.4286 13152.4735 31260.8988 18759.8456 107065.0479 24043.809 33046.6431 51384.6821 11689.4368 22015.8949 51777.9006 13750.1562 11020.6028 25184.9155 32888.7023 12266.6656 13017.0392 12706.4501 32634.6938 156868874 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 55694.9225 22558.4743 476862.0138 31141.6059 34680.8016 14317.3576 102839.7771 66036.2604 47434.4399 47536.6948 129407.6772 44509.3247 993440.4909 51515.7424 71673.7187 101448.9775 48551.7383 48551.7383 34774.8047 97864.9371 103054.0043 97347.7416 62285.1905 89462.7531 39344.7552 41023.1657 71460.6083 30389.8032 145612.4211 153201.9399 64263.4411 28092.9869 46416.9063 50780.2782 38239.6995 59243.3663 296031569 terc Metal Homeostasis Tellurium Detoxification Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 8600.1033 189202616 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 41921.7807 118660.8645 6685.0662 9938.5351 8448.2653 104314.6946 16580.3152 15414.0953 9356.5199 8405.2409 14406.4504 154765.1288 12882.0386 44206.0672 318550.2771 12466.5057 12466.5057 8107.2419 27298.4399 14358.5471 28961.4604 15972.5466 10889.7442 8642.5025 24981.4542 12138.1545 34540.4561 37412.4994 28067.7483 343999.2999 6763.1511 14873.3513 15687.3649 45190.7853 11011.1253 344338259 PRK Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 10732.0322 5240.7923 4480.6355 6382.1133 39650.5613 16082.7021 172688.8941 11792.1773 10551.3708 8858.8517 5241.3398 5241.3398 10587.094 16185.1043 6915.8785 7342.5067 7953.4865 6554.3077 7445.7266 48873.7507 6892.0882 5011.7505 18128.2818 7904.3771 19220.5644 3054.8485 7098.0545 14176.5281 6353.0897 8218.4271 157679439 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6643.5874 7609.7076 4910.7406 6951.7943 4618.0696 7067.5748 3775.0683 182290.6664 5327.5413 4018.486 6788.1832 2706.2488 2706.2488 3871.8161 10200.867 7408.7168 11143.5377 10522.3063 11545.8418 4296.4112 3823.9966 8182.7556 5237.8293 22187.9213 13844.3238 10477.6501 3191.5799 4963.8501 4753.9216 21584.3374 7024.5181 349786769 pula Carbon Cycling Carbon degradation Starch Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 6304.8262 11949.8616 52862.742 3313.7843 7352.515 10265.2794 10827.7721 3259.5317 4646.4911 4622.1199 5119.6807 5119.6807 7175.729 3694.0214 8668.5011 2939.5915 3610.5773 7551.8566 5029.6931 10964.5238 6049.285 12457.5782 3225.4294 6459.0707 6177.4249 8397.4769 338992148 dehh109 Organic Remediation Chlorinated solvents NA Acidiphilium sp. PM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 8855.9206 8617.7593 12163.2012 34643.2513 302315.1986 7316.9895 2666.9801 10360.8033 14192.4555 13034.2609 98527.9175 126302.9458 10174.1656 57366.0139 4061.5548 4061.5548 6277.6384 16859.8667 12067.639 4297.0806 18210.0871 15325.3373 60616.9806 7584.0838 22853.5638 15095.5545 39227.4393 23535.8219 22221.5214 4196.6401 8752.863 33665.2127 3103.845 6967.375 205270983 gdh Nitrogen Ammonification NA Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 10758.1241 5423.0071 212997.6424 5031.1259 4180.5219 2185.0266 4560.3237 5274.8034 2546.2222 3094.2975 5239.317 5181.197 4834.0028 5300.4549 9423.4206 9980.7649 15683.6497 7384.9722 22240.603 3482.3547 2733.4775 9237.7892 3191.1213 51882.9236 17296.941 26549.0145 3738.7856 4706.3182 5498.9837 4237.433 24559.7062 113945200 terc Metal Homeostasis Tellurium Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 38061.5189 18962.6339 27564.3314 369909.2522 22495.6434 136311.2817 64900.5786 29524.4211 38990.4814 84453.6721 63027.1907 733998.5351 99214.9835 69677.3913 87196.8049 45482.3835 45482.3835 50068.1444 54488.6846 43279.393 33050.7853 75225.2158 63426.9458 44573.9042 56887.7667 74754.1666 50569.3798 221205.972 111752.8857 63352.795 29578.6983 102699.1989 64545.456 36708.1064 27412.1942 82741452 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 9669.5904 9727.5872 27906.6917 7258.7004 9477.0908 10546.285 10728.4549 11202.4636 5979.2931 637142.8658 12347.6402 11610.3695 5387.2909 6160.2237 6160.2237 7588.9673 16895.0435 10563.8123 13851.1295 14852.1046 21917.9701 7491.5592 6377.9471 11718.7335 8134.2602 27083.6162 7151.3217 14696.769 6991.125 13567.1266 8820.898 5857.4448 15377.3789 374702291 arylest Organic Remediation Aromatics Other aromatics Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 147513.49 58350.1569 11406.7875 9408.5412 150006434 xyla Carbon Cycling Carbon degradation Hemicellulose Bacteroides vulgatus ATCC 8482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 106551.7184 78576.0549 69672.5053 126207.0171 67537.7741 48367.7439 83636.9308 146933.4183 79742.3916 69877.1678 70140.9706 74320.8293 1560977.6419 106313.4969 94281.0149 150337.6075 74295.3218 74295.3218 47539.6229 170853.5671 58549.96 101172.3443 128792.7712 153076.8488 71022.3411 61429.7166 79679.1175 81510.5678 244838.0097 131527.6852 129831.7723 59496.7894 111085.8709 71314.3877 51669.1157 117371.6088 84393134 cysJ Sulfur Reduction NA Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 5094.7149 2246.2269 2536.8749 5692.8177 4884.8961 2621.2882 96015.158 4688.3642 5894.7246 14561.82 14561.82 4814.2223 7643.9134 6243.4727 7536.348 4272.5701 6976.7826 2276.4234 2596.8502 8431.344 2085.6689 11109.8548 5878.83 9324.1656 2133.8379 3883.0048 5187.0395 2128.747 10972.9567 212171574 alkb Organic Remediation Other Hydrocarbons NA Corynebacterium variabile superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 12699.6232 20876.0653 13362.4845 7865.2335 7459.6501 8482.3506 6377.2944 4558.4711 7097.8515 81670.5559 10826.1859 262730.2079 11159.1324 15571.6112 15010.0513 8830.5601 8830.5601 6123.0927 21036.2479 8702.7482 8066.9449 11474.9751 10638.7595 21452.7758 7894.6739 14296.799 6779.74 19600.6563 8855.2879 16219.4112 8635.4719 13160.0143 11726.3811 3816.74 12088.6433 333441102 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4904.0199 15166.9968 8715.1174 12985.009 108936.1295 12376.715 7007.6468 6621.3521 9117.145 4267.6505 1937.0353 392844327 badh Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 68910.8367 46240.8502 22822.6154 33756.959 19514.7066 9282.8822 38029.7548 39150.5687 26544.099 39413.6087 28225.7164 761386.6747 19193.3298 52409.1653 36495.4783 27031.6675 27031.6675 11342.2125 39297.0591 22859.8306 17843.5253 57102.6393 37014.3426 13520.445 17050.8215 18843.3525 21037.8714 47657.3408 48031.8776 60493.3597 28528.82 29881.3182 19873.4397 65815.4458 18435.4332 258593207 hao Nitrogen Nitrification NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 8720.7653 9520.2938 16937.5477 4527.1331 10115.3458 3977.7287 8899.7738 18106.1528 12078.7449 216451.4611 8004.6629 17473.6465 12187.6817 7595.6859 7595.6859 5929.7546 14744.9837 15223.3661 11131.2273 21387.2556 19332.8919 5568.4638 14898.5781 14016.6189 5562.033 499958.8174 12680.3315 14934.4391 5272.0995 8157.0059 114352.0011 5875.5866 20752.4121 118619144 amyA Carbon Cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 5627.7934 8213.4568 4558.4511 3485.0256 8285.4323 16045.6213 9618.9304 92442.7952 5747.6983 4172.5746 10699.1195 116483.3775 8726.7633 8551.7329 10124.1291 6013.9136 5346.2941 3373.2105 3640.7323 8634.9175 3329.3804 13450.3099 10524.9848 14785.6311 3983.4018 8889.9199 72993.6496 3352.7452 6158.9053 253826201 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium L11E10 superkingdom:Bacteria; 127208.2267 11986.0019 15263.2751 15816.1372 14860.2523 5669.1961 8649.6683 10594.8832 30079.5961 15133.493 36579.4244 13309.2799 215521.91975 29406.2233 26234.6217 18408.9029 19079.8578 19079.8578 11129.3051 31224.3136 13417.7353 20373.2008 78025.3217 52002.7685 17015.3242 16572.5778 21565.921 9502.4805 34693.5801 41834.2345 16283.1023 13839.2983 16268.7842 10539.6772 259987.3502 348169663 dmdA Sulfur DMSP degradation NA Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 4597.8613 2182.6895 2830.2286 67375.2714 3714.1796 5685.1061 1806.6319 1806.6319 6499.1775 4160.3606 4120.5192 6783.839 8201.6946 2634.2447 5749.9826 2879.893 10517.7044 6829.6406 2813.8764 3419.9539 3084.6967 5639.6407 347580656 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 74615.5947 32961.1768 87003.8597 768438.7382 33274.3854 27230.2546 67426.1525 133968.3755 47394.7703 296458.9066 71232.6399 75877.056 1043527.1397 110490.0716 103444.1777 85202.2132 51592.6614 51592.6614 47422.7478 95339.7634 51334.1569 71727.1254 124227.4577 108930.9056 45264.5751 57585.7213 78215.1034 53058.4848 89078.7429 41740.8477 76951.8043 46141.4867 51795.3476 87599.7276 65251.9498 68453.49 306533004 amyA Carbon Cycling Carbon degradation Starch Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 3872.309 8345.3317 4060.08 9200.9829 4781.2069 4016.4161 10609.7328 4519.8984 177653.7827 4960.1729 2741.8591 8817.2927 9268.5797 7074.7173 8722.974 2416.0457 6555.4679 209504355 proO Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1339328.3559 14793.3365 15657.7707 20933.2944 11269.7395 37115.3255 283438.931 33823.9428 24191.763 228461.1926 26362.1615 22490.1551 40979.5163 184903.9247 184903.9247 295640.9467 32617.3107 23798.006 19918.0835 58967.4405 25918.1021 30284.3637 36153.6973 58285.534 54784.2731 576273.2214 38704.2638 49131.1021 40692.9181 44497.7338 48802.7133 245578.8462 15763.2592 223585947 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5040.9475 96353.401 2649.2599 3482.7052 3370.3688 77663.5288 3833.2133 6259.0464 30183.3093 3423.5597 3423.5597 4387.7484 9034.0003 7247.0391 4323.3916 11987.0229 7095.6633 3941.8725 3784.71 5807.1263 2188.126 9756.3707 3473.1244 7573.5102 3814.502 3324.5326 5577.7201 3794.1671 13677.5661 119396000 chnb Organic Remediation Other Hydrocarbons NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6059.1079 5518.7756 6405.2098 4951.8786 3009.135 8040.6644 2666.3212 3664.088 5100.7223 356698017 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 73570.6037 10280.4723 776197.8733 12234.9978 2423.7915 2539.1278 7701.5344 37827.2524 7700.9015 5372.1717 73161.5103 309871.5969 6842.3174 6291.4608 6594.5004 6594.5004 5181.8205 32215.9151 12338.2126 8436.0668 45226.1364 4173.6876 5541.4666 4456.1184 9500.7471 4387.2197 44014.6496 4543.4181 7209.8459 2921.2853 16946.9852 7530.6874 10681.6457 8641.4198 261360280 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 8676.5442 21541.7761 6582.2016 6010.1164 86282167 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 104310.7226 61262.7542 76894.3354 116633.1502 167861.5683 70771.5427 443395.6129 74262.4336 55600.6153 122324.5916 97838.0591 67320.5963 1964366.1693 94854.8637 115197.8665 138570.5901 66804.6593 66804.6593 53891.1735 83102.968 55001.969 67919.4162 92510.0381 98841.6226 47459.8285 32199.4075 90034.627 40710.9405 309626.5212 80798.9197 91360.8991 35830.8335 46626.7179 50708.5513 36875.6202 107056.4306 94310169 ben_bcla virulence NA NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 94225.6074 37709.947 23695.6182 29626.0481 52776.6728 9504.1282 34454.461 93658.3901 67285.6988 36511.6001 79325.2547 44278.7981 793301.6323 48178.4183 33149.7592 43046.3673 55564.5971 55564.5971 28082.2602 82324.3664 41823.5294 29919.1378 47060.2786 32378.4801 24806.65 51623.2938 40509.6454 50038.0041 135141.7988 57750.3158 49353.1893 33650.3178 46711.7215 55043.7871 35605.2619 57789.2029 297568816 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 8076.3638 10617.2705 13661.7935 8748.1807 17800.0674 196618.023 126378.1961 7099.4492 7274.2393 5314.5704 163605.7127 6477.7943 6093.8179 10463.1558 5138.1397 5138.1397 13836.9431 12136.2338 8757.4956 6308.8035 11051.3614 5872.9866 4555.018 6069.0186 14365.6508 29607.7273 21152.4506 18527.3753 12343.9097 4750.4251 6447.4525 5784.5204 29176.2942 14613.9213 60475994 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 14185.2112 8298.7869 5697.0858 21445.7709 6366.8811 2916.0542 7673.507 3152.1144 7000.273 6737.4892 7400.6357 123459.2732 8651.4802 8630.9632 31740.1855 6988.8153 6988.8153 7313.0906 17821.9382 10321.7819 9117.0701 10586.0815 13805.6583 4676.2907 4922.2192 15358.7267 3708.0702 19146.8536 8116.334 13102.7165 4668.1717 7192.8172 6318.4246 11330.7282 8030.7826 78102285 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8200.7058 6297.4685 11354.6526 11489.105 3172.7126 3641.9169 8363.5758 9916.526 4750.6433 298876.9969 11312.608 11715.8479 8690.0314 4905.7694 4905.7694 5272.733 19590.8274 12134.2964 12311.6937 23778.8626 10635.4713 3612.2937 9115.6102 17700.3873 3178.4073 18131.7907 14962.8601 8844.8083 8029.9279 6779.2427 3588.471 18711.9987 134100386 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9668.5185 18275.7005 27453.4708 8537.7576 32216.1018 9251.7997 7280.9707 9257.2366 14012.9737 36119.671 153472.5319 5367.2628 13755.8163 9830.4981 84959.7167 84959.7167 8994.6124 30570.2485 10440.0414 37986.632 10912.7666 25003.2974 6361.375 10070.3495 22978.15 12952.257 36990.4875 27462.8047 12150.5102 30223.3433 18068.5963 30759.7625 8596.9645 22730.364 114326711 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 7991.343 257521.0965 5739.8644 6847.1526 9253.7531 19137.1949 7672.293 9762.5805 11496.6825 24966.2022 194366.8574 30053.4414 9571.9824 33644.7385 5866.0611 5866.0611 6543.2357 26311.084 26180.6646 18206.1437 7577.4228 18787.0598 6748.3606 41792.3304 23276.7068 9378.2236 41024.0587 33749.3926 19568.8192 16003.7035 9839.1407 11463.9207 5547.8746 8686.4875 34017198 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5601.9781 4612.5833 2375.9616 93409.6353 4436.4372 3121.422 3121.422 6009.8593 7725.7866 5743.0484 6923.0168 2660.6877 6037.6319 4274.0146 4882.7313 6893.9061 2839.3654 2764.7416 7540.881 182382456 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8485.406 15695.8934 5765.0115 50897.9971 5865.6016 5772.6132 8339.4668 8232.7206 8540.4896 4277.1843 143283.8363 10487.3222 9068.3303 5809.1104 4813.3781 4813.3781 5958.0933 17309.4644 13270.5582 14428.7024 12273.3615 39382.0468 4821.2705 6992.5756 10117.4349 6457.9261 26031.9362 6661.7323 11769.3213 6407.0555 11816.0807 20889.0421 11348.5135 8894.82 27350589 pcag Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 15423.5186 54473.6254 13249.2001 26860.8197 6518.1168 5690.8087 26555.5786 13594.9905 25085.4394 258875.7535 9645.2689 8922.1273 26628.7448 12810.389 12810.389 4667.1572 15955.7973 24968.5345 11829.4976 30464.1839 30712.2292 12763.1881 7072.0395 11789.0479 11881.7192 16530.73 21691.2952 14554.4985 6652.4731 8055.7269 11839.6977 4274.0458 210683.2583 391220683 terc Metal Homeostasis Tellurium Detoxification Opitutaceae bacterium TAV1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 217835.3904 28753.0196 195230.9172 59064.1929 464692.8888 173187.7458 48454.4214 83309.6774 110149.9862 164159.2644 171474.1799 198872.9371 3139395.9124 142533.1726 205556.5792 348754.6977 287681.27 287681.27 86591.4884 160280.0912 122426.6197 276035.5221 518967.5667 303530.2446 161370.7373 136050.8087 258511.9847 187613.6415 485074.7336 208945.1575 308123.9279 86174.3051 109583.5959 152871.7274 72965.3025 351006.5698 261355398 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 57484.3777 152835.2244 119661.5024 26306.2423 19651.6866 12442.8845 20293.9401 67278.9229 78076.7601 34920.5606 37547.2536 47631.3916 455398.4421 60182.3153 79813.1184 88037.0399 64792.6117 64792.6117 19953.7584 79009.7454 25064.7681 27262.7247 37153.8923 32409.121 15214.4893 29320.3533 22483.2535 24010.9153 344082.8139 52076.2635 40348.6662 16716.2273 23747.2208 39505.1597 14676.3503 52328.3643 51872731 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 35501.6177 474955.3579 211057.6445 4505.5758 2953.4492 113904.5548 4722.8748 7793.4657 8727.6044 7625.2656 50777.5734 3150.4659 273999.4729 157301.482 172479.5953 112765.6779 9151.0668 268608080 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 24008.6622 7615.656 9056.2985 7333.9033 23481.4876 7985.2865 9081.7064 8140.9562 10545.3768 12693.4259 8266.5683 216615.1733 11370.1654 11841.9939 13167.0758 9435.8424 9435.8424 12224.9543 27650.0343 11568.2428 12878.186 17911.0005 19419.7664 11623.3992 8864.0451 29960.0165 9095.921 30499.8048 9341.7689 13831.8847 11024.7879 13908.1786 12512.2981 8588.4714 18186.0491 33603750 phtb Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 43700.4751 56812.8332 8219.1397 140716.808 5075.3944 13142.9718 35347.6235 130521.4201 126361.1162 29471.8338 39371.6151 227051.1165 46592.1423 28167.3179 77365.5735 87235.8423 87235.8423 18751.8723 51516.9432 32851.4608 19669.5935 68972.047 66240.9602 18740.1085 37878.5958 39624.8164 29167.4932 88227.4192 26071.2793 45827.944 17285.7415 28696.0052 27226.5254 17758.2344 57205.7402 221635600 nosz Nitrogen Denitrification NA Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 10138.8722 3595.0465 6099.1819 3662.133 15339.18 4199.5917 3366.1233 3253.5057 2414.1015 11144.4418 343479940 bmo Organic Remediation Other Hydrocarbons NA Arthrobacter sp. PG-3-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 15386.382 12656.7892 6881.4082 4747.7268 8752.0498 3856.7324 10925.7729 4227.8867 4227.8867 4350.746 10705.26 6470.7391 15275.591 57799.8625 19982.7023 6942.3946 3745.0154 6934.7697 4969.3387 16005.0808 6369.5911 2276.4656 6020.3788 4027.9029 3672.0964 334108371 xyla Carbon Cycling Carbon degradation Hemicellulose Isoptericola variabilis 225 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Isoptericola;species:Isoptericola variabilis; 35669.4309 9452.6171 37297.9892 6036.994 15786.1569 16721.2475 46514.6659 11045.9421 10918.1833 9885.931 114133.8129 10949.4179 11480.9166 18533.139 9901.2016 9901.2016 8742.1818 18829.9213 10817.3334 18339.2284 15364.5028 6053.0539 9284.926 8233.2432 9264.1331 9509.3745 18740.3241 7981.89 31978.4697 9270.2203 10877.0818 16549.8779 11733.6127 7109.7407 379141477 tcpa Organic Remediation Herbicides related compound NA Arthrobacter sp. cp12 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5994.7966 11065.439 7108.9522 54625.5009 3029.8348 6248.5402 9252.3725 3962.8888 3320178.6927 7019.9203 4939.1412 10541.2266 4821.3425 4821.3425 3521.8816 9207.0275 6176.4315 6740.7501 14234.9022 14024.4018 2625.54 4749.6268 107522.1284 60079.1926 19676.3206 7857.5816 12897.9547 6928.0017 7283.7819 7638.9443 7757.3886 11722.6994 145583579 protease_serine_fungi Carbon Cycling Carbon degradation protein Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 20254.6724 11757.958 1874.4509 2861.9272 3655.6524 5567.2944 8647.2734 89234.7752 12155.855 3587.2902 22112.1454 6072.3391 82889.7783 25619.1764 13734.6522 14855.6425 4230.0462 6754.3453 15096.8715 9168.3167 7263.1278 12489.2709 11497.4392 177812.8 34381.2107 4647.0127 31679.495 2429.2847 27316.3422 119949602 ppx Phosphorus Polyphosphate degradation NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 10391.5627 5013.2671 6824.8742 4469.7009 12142.4268 18418.261 2202.3026 6793.4021 6907.1574 3346.45 155728.1069 8601.0968 21260.6138 5974.7878 4175.1415 4175.1415 6279.5081 11819.3051 8575.4467 6482.3431 5768.8024 12940.1335 3902.7777 7390.2594 11211.7439 5756.9771 35924.3678 5964.2077 11046.0076 20011.7956 6989.6276 7571.3996 4420.9451 8659.1507 208970399 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18004.452 4226.4068 343751.3182 2260.6571 2051.841 4985.505 2108.7608 2610.2884 3026.2954 238591444 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 17347.0583 84952.7293 13051.1453 8944.1884 5439.2444 7282.5089 16656.9815 14843.9053 13688.4993 29454.5906 21354.8417 624706.7727 23835.212 17073.3923 12763.7754 13586.0295 13586.0295 12136.9407 36427.968 25793.1309 203441.5057 54078.1819 30137.3708 16971.8637 12207.5933 20377.9402 16025.0273 39692.9227 26937.6628 26054.3355 15412.6827 32078.5293 25479.0711 14659.8535 23507.7914 73534211 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 18617.8038 2849.8317 8294.5305 5670.2491 6824.7456 3323.5381 3323.5381 12429.6083 7802.4124 5256.4679 33770.0151 5166.6942 5977.1942 2770.1492 10183.7569 8040.1285 4746.5202 2563.9559 14658.321 7743.6772 13373.517 184197259 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 40868.0255 15514.2851 35674.8797 13793.718 7184.5025 7982.3046 27485.6248 73906.4256 9291.1097 22097.7478 186645.9148 94886.374 237414.7318 31253.2045 33628.3574 70267.8501 18205.525 18205.525 34794.6303 62301.9153 19014.9078 39020.2346 144823.7825 18965.223 11807.6811 28929.1781 125253.6555 25895.9848 42343.9208 30876.9778 131654.488 51656.1462 57111.565 47217.7747 25327.742 32395.5404 270043828 cmci Organic Remediation Aromatics Other aromatics Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 5507.7641 9632.9578 3077.7021 11599.4034 13731.2889 98433.3514 4431.2869 4348.3501 2312.3493 2312.3493 6977.3921 5549.8052 4091.4222 2383.6922 2749.3735 6341.7514 5646.3722 9617.7906 3827.2375 5092.4682 3466.0354 4308.8997 4260.0214 2981.8058 5388.375 334139677 phytase Phosphorus Phytic acid hydrolysis NA Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 10141.9592 23247.0141 3698.2083 3840.6156 4538.1814 4480.4171 3929.3072 262050.9744 4527.1302 5384.2196 4188.9801 7903.7327 4684.6948 5478.766 4752.9825 2866.338 6262.1116 2650.7776 9916.9405 8376.7211 6570.7097 3282.778 5466.006 8665.0622 4739.6633 6931.7951 221722934 ppk Phosphorus Polyphosphate synthesis NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 15414.6915 7938.2587 14098.552 7583.0781 7611.002 7083.8837 6384.6835 15952.7392 11384.7266 8270.4926 174256.4473 9877.4509 14451.8804 4560.3807 4553.0743 4553.0743 10162.8566 17348.49 12289.8479 10222.9915 13260.846 18513.6165 6509.2113 5355.3141 14617.9017 5665.6321 21927.0761 5655.9002 11174.8372 7714.5333 6423.4578 8924.7712 5591.6947 17394.8526 291286371 amyA Carbon Cycling Carbon degradation Starch Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 4929.0694 11275.7727 2813.76 3818.9443 2484.7126 56077.4751 6170.977 4969.2391 2184.6876 2184.6876 2564.5282 9736.9519 5453.9419 5289.9324 4359.7065 3044.4148 2562.8193 8271.5865 2502.9514 10075.1181 7426.244 4422.0856 3509.2706 2788.4597 1985.154 58270744 amyA Carbon Cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 31085.727 18673.3339 15547.9407 43294.3437 15071.9229 5916.4361 57493.8482 83728.0018 21129.0043 33648.5107 27645.6997 21029.9674 790542.1154 38465.473 25233.8768 26338.6079 28532.5367 28532.5367 20339.7586 38999.3069 25089.5328 27347.686 27670.1971 37794.4204 16306.4899 20845.307 31230.4633 15604.2441 41206.3235 12966.8613 31113.8669 14946.0116 15046.0007 30843.0224 12390.2571 39948.6652 255035723 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 4005.6585 2088.8517 4482.3364 4576.9562 4359.3475 6268.1685 4238.1286 5129.7685 5129.7685 3902.8362 8260.7519 23493.3712 16635.0468 3354.3087 4856.9137 4235.1396 6876.4816 9061.6438 3194.7943 4149.7262 6303.3247 4389.9551 300103689 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 9306.5218 6079.5343 43404.4946 30560.8435 11682.2476 12232.5705 17019.1826 8758.982 152693.4495 15575.0774 40069.8465 13706.1776 13706.1776 8499.9326 17361.4932 8803.0785 7900.775 13725.1857 13438.7572 10954.0146 14846.2824 11965.5218 10722.899 26827.2852 20506.5571 16358.8284 5793.0541 9651.7357 48299.5067 21245.3581 14856.191 374621891 tehb Metal Homeostasis Tellurium Detoxification Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 36657.8801 91511.3321 47453.7378 55424.2981 49971.2279 20935.8848 34774.2261 29885.0347 23676.6422 37314.4935 38744.1811 20111.9243 987528.9521 42847.3427 49842.1226 43698.1963 29745.4322 29745.4322 27049.827 60815.5854 139222.9051 36890.0384 54975.9668 49329.9799 72872.0201 24239.452 51695.5454 18987.8146 76581.4936 39016.6284 47662.091 20866.9547 26086.1384 32336.605 22472.6428 66408.4682 358639640 arra Metal Homeostasis Arsenic Detoxification Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 756874.9672 36118.1191 256076.6066 111703.1685 1365025.7382 80321.8476 226397.9982 525779.7801 214484.5585 291448.375 491991.5487 222391.7339 15028153.5866 262630.5175 444490.5812 698185.3419 306735.1949 306735.1949 196106.3264 230540.9915 183335.4923 322494.4406 577594.3242 542328.6477 194576.4631 308208.5551 263554.8395 314783.918 605515.5409 402380.0806 483225.149 169666.0075 230574.3217 264039.6282 303945.3618 247109.517 371670780 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 7_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5569.594 23466.9947 353200544 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 8776.8851 5420.3958 9232.3853 14108.0995 8750.4401 3948.1507 7874.5881 3892.0131 82747.293 4035.1995 6187.3118 5033.7826 3064.4361 3064.4361 8994.0962 31412.1043 5213.8535 6010.6293 4508.6049 2526.0507 4550.9933 6980.6947 243268.2737 8202.6833 6804.2424 8526.4725 4228.6866 71248.2173 7340.6651 9173.1487 317122441 mer Metal Homeostasis Mercury Detoxification Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 13607.1152 18297.5127 3320.2775 8199.4735 3896.4477 4600.0012 5577.3217 98675.1693 6817.9854 75858.5699 16350.9714 4191.7025 4191.7025 5381.1715 14972.8254 9107.4356 5004.645 7494.9507 10357.2487 8611.8935 29353.8729 6802.0306 24807.0828 14544.0466 18997.2037 6185.276 8793.6294 5839.9865 4980.1275 311286862 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 13165.411 5953.9229 7154.7645 6137.1327 4648.9543 5917.9264 15389.198 10375.9687 9539.5804 30257.3607 3590.6096 3590.6096 3671.4956 24645.222 6031.4373 7326.3478 5980.7118 4423.9333 6005.9704 9662.6478 5302.8937 13695.0497 11906.9198 16276.4233 3124.9397 16403.4797 23788.9458 4681.5423 6890.9484 253689679 trze Organic Remediation Herbicides related compound NA Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 69244.7517 67426.0516 34048.3244 34757.7347 71498.7074 15051.096 73340.9264 83396.8381 36506.8209 81886.4744 130541.8062 69696.4473 2150606.4956 72025.5813 96560.9087 227213.6994 65142.6694 65142.6694 42853.7358 220040.4444 74051.8419 93704.1483 99883.2901 56173.967 66236.4623 62333.921 80019.0202 105068.5103 212335.0208 156210.5165 91735.1445 49458.7655 71523.4949 136748.2411 37408.6406 82746.3714 350560419 pgk Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 71441.4918 63629.1259 79332.9241 143280.7444 47202.9585 22641.78 65301.0665 19204.7074 32064.7397 41877.2498 506575.6883 72295.9191 63293.4951 100819.284 24294.2484 24294.2484 12662.4453 53796.6088 31957.689 70694.571 39952.0416 49032.8338 29197.5053 29208.6297 37632.2076 61478.0913 81556.8619 56437.9458 76021.1587 28844.5623 59902.5627 47093.6618 45511.2415 27955.03 240278137 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 16646.8003 12587.4719 20819.3787 28619.7179 5285.5045 6565.7219 5732.2536 2627.4745 18112.3104 13562.923 33781.7533 327172.9093 16075.9648 13121.2769 10588.4943 13601.4971 13601.4971 129979.593 21644.3893 21369.5433 18932.1339 11880.4436 13427.1184 7300.7473 11113.0934 26596.8411 6453.4372 40651.4896 39403.9968 47452.6523 9356.2172 13112.9629 28294.4861 6655.0542 25535.9793 119956473 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 21828.0038 13216.0296 8017.8971 5455.8327 7060.8614 6440.1008 9684.5309 5836.4578 195050.6858 18572.7124 136858.3274 11563.075 5544.6846 7690.7601 6498.5957 6498.5957 3320.4059 17358.9456 8346.3908 4365.5846 7970.5202 8783.626 4509.0172 7895.7918 21679.6963 28383.8185 22463.1896 23412.0286 12078.3221 6747.4687 6546.7027 6252.8496 16034.9137 13182.6185 47680331 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 10343.1209 11257.9535 14490.6159 4478.182 16650.2696 5913.6898 6635.2385 5180.4334 5970.941 5687.3691 1923.013 1923.013 7782.549 11146.2921 9009.8992 4545.186 5748.4567 4049.9891 4997.8559 5390.4626 4733.5825 10541.0629 9350.7146 8197.3823 2733.4968 5507.0273 5789.3364 45452.1348 340786960 chna Organic Remediation Other Hydrocarbons NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 7260.5136 13050.3841 4485.769 2062.6698 3872.6426 7698.778 3156.4018 61110.661 20281.4883 10455.8909 8256.3298 2101.2148 2101.2148 6637.7026 14503.4358 4308.6563 4519.1067 7188.691 3575.4617 9210.1794 14553.5211 8111.036 15650.3377 7237.752 7301.1517 38857.3724 5293.9158 9021.6976 3629.1429 6723.5347 304403713 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 7017.526 46253.0492 13465.5355 6089.779 3735.076 4540.824 4770.3305 81895.6509 5037.2926 7289.6176 7289.6176 7500.664 9109.0174 2908.6718 11858.7317 13358.9078 12566.7205 9507.2214 4486.6542 4220.7266 7554.1559 251789896 phenol_oxidase Carbon Cycling Carbon degradation Lignin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 18345.7233 16988.5403 14906.8856 18051.8712 10017.8644 10832.3176 19557.812 17552.8598 13179.0389 18846.0435 10729.6388 225270.1419 15698.5603 12709.8806 14243.6157 4859.522 4859.522 10589.5999 26070.4437 17263.5038 17201.968 13821.6202 15470.6631 6850.5224 10830.8479 17248.3201 31699.0942 34383.5928 21185.1397 23447.4825 15338.5361 20859.677 15321.9673 10808.3111 19963.6836 297625164 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 5997.1325 9471.122 2557.3656 2557.3656 3751.1488 6793.7013 3306.8894 3260.4675 1726.3555 3880.6671 6003.2871 21111333 hbh Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 48814.5002 84797.1576 14555.5611 17812.2558 31195.7236 22014.662 11118.3615 15423.1289 11202.1782 11653.2283 21890.4382 12238.2857 172618.7095 27513.2379 16833.3963 16803.232 9992.6811 9992.6811 11963.1793 21860.0138 20717.7231 13606.5442 28686.8357 33156.6023 7414.4388 30777.5339 25124.6408 14275.9931 37834.8194 25960.223 31647.4526 41599.9139 39686.6602 68691.8266 30287.6698 16869.7901 357632620 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 104132.9769 28096.0569 30316.3377 28252.0655 16178.939 40757.8544 58966.1424 57579.4907 57313.3617 134046.7258 61938.0333 712838.2822 54832.0158 85821.8697 52635.0021 62192.64 62192.64 25547.4969 93444.6777 33765.9777 57818.6933 100377.3949 57263.6446 39268.293 45081.5369 128280.3275 66878.6806 177349.2108 64887.3178 63431.0776 44834.2011 54377.9204 167335.0342 35508.9104 105785.6391 186472841 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5722.198 114907.162 8133.0034 6097.3871 8649.7165 6304.9434 4059.5935 4003.0025 4353.5268 74250.8788 4793.3851 9552.6288 60174.0018 5790.4553 5790.4553 5074.551 3445.9026 11143.066 3887.0055 4172.7173 7345.8727 8991.4184 3164.107 21528.4922 6866.8585 19843.8916 4943.5449 4737.4967 38172.0174 5441.5575 10302.9137 393720804 xyla Carbon Cycling Carbon degradation Hemicellulose Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 27936.4739 490853.9282 10400.5506 17271.38 8331.5807 12845.9785 12403.6765 22106.5714 4486.7316 7805.2744 28760.3872 86972.3131 8904.7534 69552.9649 190989.2008 12565.3556 12565.3556 10877.4737 27014.9259 17350.1301 295246.569 18350.3271 22618.9977 11506.4547 12888.5724 13300.0167 26585.6443 33637.1895 27466.1494 25799.9851 14364.9359 26053.1681 19504.3905 15539.0736 10492.4711 386845860 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 714087.9823 42467.0128 28159.3687 26697.7591 5739.7481 44178.6154 47617.7143 10509.0114 23974.9863 27848.1559 46123.5718 877552.2905 35247.3983 25375.2354 63852.0725 49374.0734 49374.0734 92505.5775 62359.5971 21796.4009 126506.1914 313109.4273 98906.6917 29584.0994 68071.2944 34541.8499 68145.0846 154159.1916 33431.1807 135991.0014 18009.4037 34929.9224 60806.6394 100220.2019 93972.4745 311286204 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 28400.4036 33817.675 16934.3292 39148.4889 14251.5015 45680.3149 38613.5131 14090.3309 126310.4843 37002.8208 42598.3854 1061558.5173 33682.9283 83076.8527 49864.7328 32883.7902 32883.7902 25763.028 122400.5409 41023.1804 33905.5142 506366.6402 28768.9351 55222.5561 35994.5288 70880.8848 45773.7127 163103.0943 80323.4166 64539.6873 35007.8884 60762.2156 55626.8978 80067.1693 89868.4167 339494548 nitro Organic Remediation Others NA Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 118614.2159 5304.9138 11359.3634 7753.9595 5241.0106 1832.9665 1832.9665 4978.5877 26140.7001 2435.956 13763.8439 3139.9695 7655.8659 14209512 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8268.0134 10826.3038 8277.3666 148234.9053 6797.432 9427.2781 4886.0028 6830.7638 17623.7052 5075.22 141962.359 6395.4874 11049.0171 6562.0035 8077.5671 8077.5671 10626.436 15637.9718 10052.5343 23816.6063 42526.181 10565.7686 6692.6286 6954.9509 10123.2928 14932.6586 15186.0319 15203.8832 34758.9617 5290.1233 6043.7006 26804.3988 4185.9237 15751.4849 12744277 nosz Nitrogen Denitrification NA uncultured temperate forest soil bacterium CZ0143 superkingdom:Bacteria; 4319.5802 9278.8693 23778.7162 671271.9569 2048.0696 2048.0696 2686.5538 5214.0752 16603.2482 11713.5538 4664.3512 346992559 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 9656.6386 3488.2339 2492.582 2709.0506 3179.8334 122429.8571 3427.5856 4239.4526 2786.72 8708.8584 5115.2574 4312.7906 5743.3103 4252.7613 3517.9216 5819.0206 3288.7102 6270.8758 6514.0054 2893.063 3650.8523 3988.3689 2891.9976 5724.7898 225351121 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 7249.8039 8232.6105 9772.7741 42176.8983 8163.8751 23588.2398 8724.293 7746.4983 7970.4373 5207.4019 120735.9958 8890.9134 8410.7283 7911.8894 64483.492 64483.492 3531.8358 15087.0817 11256.7193 8994.4573 8334.9792 16785.1378 7595.3062 7108.1067 20954.5359 8535.9806 17020.8487 16223.4527 14600.3118 9469.1694 8311.0678 8137.3673 6265.3976 8098.0601 154285146 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 386280.7909 41633.4679 67986.0169 1070337.4937 79156.2874 223190.3986 159010.0788 483918.0842 61465.7715 93733.742 94865.5881 94662.3876 2590778.0056 95886.228 92933.1379 110965.1216 109639.7147 109639.7147 50792.8882 181066.3571 67282.6042 522201.9573 117281.2 173148.1679 52685.8511 128983.949 94567.8523 66585.2859 634430.7055 68169.2345 115879.5455 185435.0194 62734.6708 68401.7934 63021.32 222147.1636 116255378 linc Organic Remediation Pesticides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 38600.5818 34152.8431 37748.5795 35559.994 25521.864 15750.4495 39634.9142 27866.5418 21439.6598 28665.6867 60402.1038 23005.3403 877261.6901 39877.7396 38827.7563 33774.0477 18613.6034 18613.6034 44473.3998 49317.1101 30050.1696 40959.2068 35685.1752 45543.0197 15909.1052 16606.6601 44336.6125 18951.2653 62910.1557 26066.2972 41249.0396 18472.9401 21608.3079 26471.2424 19042.7065 41711.5084 163261088 cysJ Sulfur Reduction NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 80825.699 23796.7815 41502.1276 41169.4028 124389.9307 36766.7174 71093.0552 101600.3727 57319.5773 64043.786 63322.842 111699.6939 1616922.0979 81709.8811 93825.4693 110387.9394 73103.9149 73103.9149 71156.0928 168402.118 61856.7631 83420.4541 87997.1947 51606.8501 38030.6352 43238.1918 110149.3565 114251.2787 147967.9604 68187.7742 82999.4317 47930.9458 82538.3457 66619.5774 32136.5834 73010.6509 115401686 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 21122.3471 12545.2161 14700.885 9848.0538 5998.8517 17566.7201 122509.7574 10118.1635 14818.3298 20828.6432 45571.7306 319499.6901 16822.7098 27959.3471 20641.284 11011.0362 11011.0362 12932.3784 26916.8351 29553.7269 18883.6 21608.3158 24323.7083 14101.7574 20358.7813 27718.6591 98839.2125 144725.0055 56169.7914 22089.2987 34153.7338 14997.3272 20291.9167 15139.1051 24866.4973 288917135 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5150.3649 18428.6114 426770.9675 2394.2133 2187.8799 5596.3557 6803.8356 7616.6492 9976.8452 3749.816 3819.073 5087.9953 3667.2036 3667.2036 18258.8152 6435.8722 13276.6439 7621.1069 6700.2719 3490.9929 16463.5174 14801.1083 9637.5364 10380.5601 2738.5643 3432.1701 8716.3273 9526.3205 156446817 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13050.7159 6537.3294 8127.899 9796.763 7553.195 9880.7617 6221.2082 15327.2837 11424.778 6413.5127 245008.8443 11248.8766 12026.3713 28335.4319 16560.0051 16560.0051 7228.7662 8083.2869 9565.1301 9311.6608 38090.998 19862.1599 11165.4641 10767.0884 11406.7602 16335.4107 23298.1984 16735.455 19802.9691 19883.5769 11301.6493 9655.6299 6398.8605 9458.3775 163841463 ppx Phosphorus Polyphosphate degradation NA Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 4123.6137 7780.5843 6409.6642 2557.8344 2936.7656 57008.7465 4819.5784 144245.9881 112993.8724 6721.5171 8375.5074 14677.863 14677.863 10120.6803 10231.3951 14467.4208 6226.48 4903.7231 4580.6761 3173.0804 30221.0711 76676.361 831720.6276 10353.4315 9895.3415 5133.5203 358522.5146 4383.6793 7868.8207 7531.1874 160936847 ppx Phosphorus Polyphosphate degradation NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 20429.1742 15133.4254 24458.1093 18262.1277 7694.3594 22492.0571 21493.199 14441.5871 18575.0081 20288.1599 9756.2612 527032.8361 29915.073 24235.6449 18332.1048 9613.191 9613.191 15199.4873 30516.3584 31491.5483 29987.9023 29524.9998 28563.8809 11698.0754 12818.4431 34446.2864 9450.4842 42858.2105 48027.625 29408.038 13955.6029 14941.0489 15315.2232 113081.9825 35454.4401 158251644 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 238330.7005 12082.9766 35179.4136 37111.7156 40021.6647 12614.6206 29199.916 56909.1183 26100.3297 100675.6286 59411.4898 58179.4868 587148.3312 49242.9831 53533.4043 96058.9369 124694.3243 124694.3243 38389.7771 46480.0915 49607.6333 43035.8712 40617.1666 84898.4037 16772.6781 28402.9628 56336.1011 39721.9047 266543.7239 77766.0069 74571.305 27681.7208 71739.5468 56233.1341 34104.2268 32019.3255 82945491 ben_bcla virulence NA NA Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7974.0146 158428.507 10252.1972 9342.3539 4860.1107 4907.1587 4739.1949 6937.5454 15377.0833 122242.7438 6270.2249 6860.4786 8183.9692 5313.9935 5313.9935 2664.1955 12128.495 12444.1809 5987.8176 30932.3876 24542.0793 7920.6138 10890.4782 10990.9844 5585.0459 29398.6074 12407.3373 17572.2508 5937.4817 12543.7433 9834.243 4031.1438 227069701 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 5583.083 7146.2978 3554.0852 2192.9843 7464.8922 9486.8315 3729.8481 4547.454 8870.8843 2263.0191 2263.0191 3870.0366 8485.2812 5752.9934 10847.9276 2836.1554 6539.0947 8543.174 5353.5953 10443.4069 8184.3545 8592.0494 3789.5864 4980.2556 4859.3003 3850.5454 8254.2029 4827073 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. NCIMB12038 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 25665.0589 11518.5727 15082.4573 15240.0407 14246.4334 10793.0007 14656.0671 20291.7732 14321.9858 420096.6634 27331.037 17259.1942 15571.4431 9286.6678 9286.6678 12226.6805 27770.1931 16011.1349 20064.3336 20714.1587 26263.7289 8680.886 9378.1352 19124.2704 9786.4752 32832.6342 21266.7127 20693.2271 12531.4263 11943.3904 15386.6252 12188.0159 25787.6673 212171444 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. S15-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 26722.3406 10789.0422 14962.5894 8735.7712 4799.3344 9756.1079 27758.5018 10851.2582 14448.8901 20503.9311 11563.253 275106.7931 14580.9531 19236.9827 10596.0731 44546.5283 44546.5283 12498.7516 25108.8866 19990.8695 26017.5799 24479.4137 46961.8335 25613.5823 55342.073 48208.9425 11687.5172 67278.8085 53675.1759 26491.1209 21866.647 15860.2851 29227.4336 14321.2735 82047.536 408749475 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 8176.1288 10744.6825 103391.1002 3466.9939 11718.696 4094.5673 3649.8236 7730.9841 2627.6355 14839.2755 4307.4244 8661.5608 6206.1013 6206.1013 2821.7727 11640.3107 6225.6358 7296.371 6240.2625 6051.2826 5367.2413 6986.0888 5558.9663 24275.2395 11365.8673 10020.2705 4747.1911 11547.6102 5478.3009 4076.3722 14989.4012 198253525 dehh109 Organic Remediation Chlorinated solvents NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 11940.9654 30316.3718 12611.5963 13252.4642 15200.2864 62977.2342 8477.2559 13515.5025 62857.6008 130732.2491 11616.1793 8965.4015 5460.2894 5074.0011 5074.0011 7370.0324 15919.4866 17809.8309 9313.1831 11179.9747 12274.9638 8054.8765 4353.9164 11239.9441 9076.9214 23958.913 10515.04 12035.6043 10023.7284 9248.588 17690.6346 6855.3362 8526.7586 371949157 RgaE Carbon Cycling Carbon degradation Pectin Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 15109.0413 2918.8753 3262.0168 4133.102 10463.1801 10463.1801 7350.0783 7728.8361 4500.5708 14732.6371 2324.9603 2679.9189 55740951 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 33259.7764 35992.0836 15351.6425 26817.0341 47073.2929 18465.9077 114391.9749 95981.4769 17431.0414 20823.7213 33105.7677 31628.0123 1104221.363 29481.4546 100442.62 45091.628 24473.3512 24473.3512 76192.2483 46975.7164 41462.687 20657.6504 47545.816 43163.2253 15357.9638 83672.0397 48426.4471 28277.697 63673.861 53512.9037 49129.6257 34875.7789 28148.6858 59833.1342 25623.8623 34399.2665 119377453 soxY Sulfur Sulfur Oxidation NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 11746.23255 15138.97255 14227.39175 5476.57455 9899.6067 6004.27825 9016.89955 12201.35955 10024.89135 210098.3251 12478.57905 9064.7861 8075.8303 7874.2216 26757.4617 10492.12105 13874.72105 6628.311 9592.1673 17901.8936 8778.85835 12704.25545 8076.8739 29828293 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 4502.0391 16408.5709 11356.7619 14537.9861 3706.9302 5914.1647 7282.8193 7282.8193 2205.633 5970.461 227832119 ppx Phosphorus Polyphosphate degradation NA Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 52496.6804 15540.7277 99225.6098 33471.9978 35400.1461 39053.4169 43780.9226 76585.1109 31054.9308 60012.9235 43023.2409 32789.501 573205.4508 40387.2712 46888.3873 84003.7374 37897.3399 37897.3399 23986.9781 53649.18 33851.8112 35187.5051 116026.0301 79077.5021 23920.131 21224.4158 79667.3746 22735.3585 65850.3662 36705.1139 45517.5475 28366.2056 26909.1792 32009.6057 23320.5683 62975.9572 332531262 terc Metal Homeostasis Tellurium Detoxification Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 6034.1596 7280.7588 11842.468 3261.1201 3961.0922 3834.2613 4775.3836 2853.6188 2853.6188 2780.138 6974.8 4189.3104 2782.7871 6860.6188 8658.3656 20537.0637 5162.8025 2180.2622 3878.057 3427.4158 4758.5041 94423396 arsc Metal Homeostasis Arsenic Detoxification Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9127.6159 5622.259 15707.4041 19057.1477 4432.5516 3538.1721 11714.9171 6016.7932 317619.3489 6567.0439 7074.325 8629.1411 22843.6694 22843.6694 3513.0192 4871.9173 8506.8774 4678.4535 2254.8994 5315.2216 14793.9401 2198.4769 14529.3821 8669.6244 12891.9178 4847.8528 5780.6172 5898.059 5129.4543 4989.1754 90954587 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11725.189 12427.2127 7656.7298 12805.8826 16490.4586 5321.865 8237.1655 7550.7581 5914.8869 10212.0478 12696.7808 6308.2402 277501.0931 13511.3925 11980.2803 12766.4517 10997.0955 10997.0955 6730.7153 17001.4259 7661.3436 38246.7123 11474.0374 11493.6285 5591.5487 9010.3367 16522.6129 7419.4903 21403.0261 15825.727 14390.6304 5105.4902 8136.968 12177.0935 5251.9744 30331.1389 333736834 ara Carbon Cycling Carbon degradation Hemicellulose Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 10965.5673 8040.3801 4165.271 3377.9132 7843.6906 30583.7099 12608.4286 11230.3451 108663.4899 12599.3037 11114.2589 96960.6962 13173.6378 13173.6378 7290.4315 102736.4924 47269.3416 19033.7579 16271.3519 8408.4551 12369.7375 10628.6199 6639.0516 20017.8847 18557.3411 11553.2599 21258.6349 5228.7229 18947.476 10603.9103 6475.3836 11166.1715 315122392 PRI Carbon Cycling Carbon fixation Calvin cycle Candidatus Liberibacter solanacearum CLso-ZC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Candidatus Liberibacter;species:Candidatus Liberibacter solanacearum; 23471.8191 15776.4585 21206.615 13714.4339 6306.8624 21806.4197 15181.2187 10207.3437 19775.7535 17942.8994 10714.9628 365311.8086 17712.9259 19991.6047 11190.0688 8483.289 8483.289 11280.7871 20177.7835 24245.3668 19905.4674 20398.5268 24908.9742 9289.7038 10583.5053 18688.3025 11250.0328 44226.2156 16820.1233 19159.1838 11201.3502 13602.757 13766.6579 8825.952 22736.8637 169266 ligninase Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 169124.5586 13133.9178 15975.815 58357.6662 9062.7335 72125.1675 10544.4374 8770.8923 10110.0376 15851.9533 15924.5019 70129.6196 15267.1177 8105.2164 16848.0146 9745.1758 9745.1758 4934.6272 58191.879 9416.1786 48397.886 34058.0796 28322.2985 8252.3352 7137.7106 11934.3607 8172.6555 33660.3945 31821.6407 25232.1329 10176.7914 10886.0404 25832.9493 9483.6058 14640.9423 209401596 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8878.6771 5234.6926 8291.7036 74440.6197 19942.2255 4278.5596 13362.7293 2693.8428 8963.1536 85863.6272 87493.073 323612.8229 15784.2097 11143.6871 22984.4199 19192.6724 19192.6724 4542.8531 21254.1969 12198.6167 5017.4726 18066.1154 6613.1285 9320.5609 8928.3206 22560.3447 5749.8704 21727.9487 15634.2061 26299.073 9756.377 9015.7022 12104.1962 6910.2161 8666.4758 505629 mnp Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 32451.5535 7811.6597 14362.3111 11899.335 10410.2505 7614.755 14996.3127 12271.6618 13246.2668 33000.8791 19707.8778 247917.1232 13840.9148 22766.9539 23497.1785 12886.0461 12886.0461 11821.6025 33268.0497 11628.5693 33577.8207 26274.923 45299.3221 10986.0197 8158.728 17167.3582 11735.5069 25905.6344 9192.728 20251.9007 10051.2661 10624.6478 36865.0223 13857.5179 36703.0606 299745843 Dyp Organic Remediation halogenated compounds NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 8918.7255 5618.9053 7910.3591 8582.4808 5676.1476 6032.4512 9932.1958 9300.0419 4073.0873 241964.0919 24134.4074 9660.8078 5421.5561 5628.8583 5628.8583 7873.241 44124.629 8870.2813 11091.636 10575.0781 10868.4513 7516.9301 6283.4273 12577.2942 4752.7379 25503.7974 10532.0092 14998.4224 4706.9171 7266.1674 6984.1541 6185.2671 11798.5364 196212317 alkk Organic Remediation Others NA Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 28887.8328 27915.1247 8337.5666 15515.798 7482.5405 15915.3362 13382.9394 12166.0459 10058.1756 14429.6597 7130.1664 312273.3088 16335.7898 14887.5156 11304.9356 6906.1114 6906.1114 16425.7995 29950.9006 14169.0611 15849.9368 19733.2951 30859.5787 11431.8323 11113.1639 15482.6325 11931.1068 32874.6859 9840.5353 23393.272 10843.3094 10594.7983 11327.3601 9260.4234 18040.5074 26278736 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8216.4812 5969.0059 9369.2245 16195.4177 10235.2101 5793.2645 4171.6884 8404.0698 10223.7723 6199.579 208259.1673 10169.8545 8382.6789 8720.2196 4175.8028 4175.8028 7126.9922 28060.9469 10446.0878 9231.1808 16460.3753 21161.2514 5605.5049 5624.7786 15127.5002 5228.1612 18855.3222 12325.6579 13606.4877 8038.8015 10392.2572 6251.2319 7681.225 19693.6951 302406462 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 11384.4687 33459.19 12297.9566 4883.8056 8425.1086 6184.7905 372883.6396 11409.1322 5161.2169 8978.3374 4126.2388 4126.2388 6371.3253 5628.5659 8872.8075 8221.1373 3327.5513 5199.5627 7262.1102 76182.4697 9611.7437 13860.8186 5503.2176 7063.3862 5013.6092 5641.5896 7531.9409 323317065 amyA Carbon Cycling Carbon degradation Starch Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 8054.6175 7085.9655 7032.7699 5038.9557 5282.2474 6381.7235 13292.4566 4235.9089 164427.9428 9810.4111 6988.2604 9906.1584 6383.1471 6383.1471 5177.4092 15252.7489 8027.0424 7968.7699 8248.6443 11137.6713 4058.1039 5117.1885 13234.045 4943.5114 20440.762 11408.8985 11616.0406 4803.275 7460.6616 6717.214 4420.1366 12324.2896 390947839 xyla Carbon Cycling Carbon degradation Hemicellulose Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 10354.6174 8211.7529 8090.0168 4819.5399 4365.8962 5367.1917 3067.8232 94243.58 12220.9461 5808.8386 4147.7038 2424.6764 2424.6764 3660.641 24752.7521 9705.8792 5240.5155 5623.3091 5998.5711 4097.7679 3406.0757 7194.9115 3212.0984 16107.3936 5036.54 8720.4739 4024.2578 5116.3585 4298.61 4932.4243 29059.7898 297039241 gdh Nitrogen Ammonification NA Giardia intestinalis superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia; 70950.211 18009.8662 56042.0753 62480.3684 121902.0505 174957.0949 57400.1024 97155.0189 45550.4563 145573.6816 113973.9872 72576.0768 1711501.8833 108591.26 179408.1793 56377.5517 75778.0771 75778.0771 85256.8884 94439.3319 58275.5193 105748.7513 195004.5189 192887.4907 80658.1941 46253.7462 87772.4661 67595.4002 226219.5817 106010.3345 88894.2977 170419.4191 52002.6311 97263.6393 45377.8189 72557.4226 58422515 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6569.4464 10816.6809 7191.6318 3024.5783 5928.6385 4216.7454 52573.4477 10337.1466 3847.4778 4668.0688 4884.1834 4546.7969 3788.9628 7099.294 6013.6652 14898.7415 5048.1234 1996.3595 4723.1751 8701.582 183178070 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 7070.149 26992.1688 3311.9518 19313.4202 5289.5317 4382.1835 9108.7023 5299.4805 87979.8794 4098.0851 9279.9643 2807.3791 2807.3791 4257.1047 10985.4467 6748.0613 3893.4593 8245.1066 4766.7511 8185.101 4666.3135 9054.1781 3184.5917 15030.3912 13073.3461 10916.693 2822.9947 4825.8421 3830.2597 5212.7004 4811.9712 170733044 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia cenocepacia MC0-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 35386.2447 28062.9226 45621.6598 56119.8893 37749.916 13194.8179 27375.9557 23184.4947 23321.1475 119654.2682 34214.7733 15178.6241 784652.0402 37016.8498 36314.0588 36765.1128 26812.7179 26812.7179 23628.7074 45981.8255 38828.8397 45628.8644 52367.7677 45252.9055 20243.8324 17913.8104 37996.5851 15872.0165 57900.8308 41970.2861 45289.021 17423.3093 26919.4561 24000.735 17072.4965 47956.4301 89345938 arylest Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 126386.7838 16972.3422 16369.7841 11332.1054 21194.3673 8229.1937 20637.8329 126760.4026 19116.7754 14480.5861 72120.2485 50032.0399 3494174.3284 65799.3608 22673.7604 92307.1152 29820.25 29820.25 11174.8948 44708 37729.7424 25940.54 60226.53 10578.4721 11286.0989 39178.5695 127847.0694 14075.573 127310.4764 25241.6893 51981.3992 16095.8629 23465.7031 23852.0718 32197.768 18270.4783 207738888 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 5832.5361 9583.4127 7208.2929 4959.4125 3980.9414 7823.7427 3844.462 9617.434 5806.656 5806.656 3541.4851 60475.8555 11545.8434 2980.2631 7238.2412 5729.3539 71637.7457 7234.6623 13475.2007 3798.1212 5483.7942 3364.135 29904.6816 371552167 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 9802.9776 34293.583 8250.5227 5172.343 15622.5728 2738.4741 6952.5908 6704.969 4857.7249 9233.5082 11809.1446 276288.3758 12848.4813 5283.7284 8311.8836 4113.2471 4113.2471 5466.8578 21083.097 9136.0218 6046.029 16812.7992 7035.9282 4039.4441 5542.7373 13801.0344 5575.823 15609.4166 9788.0894 12250.7793 3771.0786 5406.5327 7902.2117 4492.1729 23292.6713 352682292 gdh Nitrogen Ammonification NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 17341.4809 11265.6173 12689.9812 17031.1772 4412.6229 9577.495 6427.9611 8584.3006 131942.3051 12708.5711 11902.9116 15410.6528 7371.0672 7371.0672 9529.9737 62175.9319 11244.6498 4209.9726 24294.0343 7841.5967 9438.9027 51229.5366 11889.2393 22065.7241 18832.4172 21253.2275 13726.3517 3040.0424 7726.1687 7962.7843 4174.8847 6571.7246 339884300 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 4725.5835 31058.5642 25659.9411 3188.1562 4367.7775 4383.6302 61466.4046 4823.2882 4005.0545 7002.9776 3981.7989 3981.7989 3379.3194 28578.1483 4703.3249 3367.9908 5047.7127 6207.576 2559.6605 2612.4838 8806.9314 2460.0396 10020.5785 5850.7176 7252.8118 3786.2096 3911.2901 3623.9731 4026.5402 4498.7611 160917735 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7668.7079 3735.8865 2969.7371 3949.95 4883.5474 6042.7269 8522.6934 4651.6326 17059.1864 3970.7569 7092.6923 5084.1592 62149132 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 45623.4401 15760.5679 10303.0516 5161.2909 22012.959 30736.3572 10311.9981 21618.487 42499.932 85523.6132 1404715.6939 64732.7049 35215.3814 25575.4951 44933.4878 44933.4878 203310.5533 52496.893 14973.2673 19606.1275 63574.7796 18127.6651 22014.2801 20477.0304 23066.2323 16029.53 35602.2578 18199.2083 53301.3929 39589.6017 56787.4092 68131.3269 11045.4802 36864.2082 77383659 atzb Organic Remediation Herbicides related compound NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 20901.4437 27610.1015 11437.7183 10467.4486 26298.5766 10412.2178 17104.578 12178.8147 17723.4968 19545.1396 12370.5854 302754.6098 18341.0041 66199.1762 16768.1051 16420.1975 16420.1975 8431.3163 30193.7162 17279.4903 19566.0535 90744.8454 32610.8339 11481.1918 20613.4725 15835.4344 55831.3253 39980.8253 26762.1734 27832.1633 10521.7149 20755.864 23772.1154 21826.9014 75235.9212 158312372 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11438.3504 28889.8316 40455.7035 7584.8481 24746.182 6875.4227 2897.4266 8492.6021 7782.3187 53034.3666 115355.858 25720.2504 20748.3114 10662.8568 7495.109 7495.109 5077.0947 17991.2722 13842.4928 15206.797 13667.43 13897.711 4809.8255 12327.893 19747.3202 6765.0654 28094.9165 17975.1308 17629.1676 6637.6957 9951.4495 7413.3536 4813.1317 13597.0274 238713497 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 38113.2966 41967.3572 121031.7436 11909.6745 11297.6863 21932.9109 13464.7654 12694.5883 19182.633 18912.3585 386503.8846 22062.0145 28120.264 84993.7159 28024.0635 28024.0635 27925.7596 47611.6892 21482.0568 27427.7291 49003.5522 25914.5701 16312.9852 14516.688 20859.0414 18987.3058 75091.8801 32164.5909 32364.875 9233.9032 26430.2415 29824.2297 16257.1506 31314.7577 218660997 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli IE4771 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6404.1503 5865.5872 9782.5839 2621.0473 3869.3077 6897.43 5491.5888 126479.1105 5216.6546 4522.1804 2566.4681 2566.4681 5221.8485 16399.3049 6607.6394 6310.351 9730.3117 6036.7542 5115.6441 8413.2894 15378.6932 18283.2476 7050.3619 10906.7371 9733.0966 6407.8531 3021.5424 14557.4084 260223415 atzb Organic Remediation Herbicides related compound NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 13502.6427 29073.2028 23348.3583 7480.322 6938.4927 14104.6356 6579.7463 8251.2214 16755.5 13963.968 138617.9651 9204.2309 15637.3663 43304.1888 9288.7851 9288.7851 4968.7438 14397.1955 17618.9334 19462.3905 10210.4515 14162.0248 5536.1267 7386.2234 18171.1107 9270.9836 27764.6307 15575.5782 12880.3791 8513.9909 8366.7189 33538.0403 9408.896 6785.376 149144755 B_lactamase_A Virulence Antibiotic resistance Degradation Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 30010.8241 23181.474 28281.8305 7863.9461 3557.5276 11766.2488 8643.4872 16729.5825 16355.0766 14720.0406 194053.6886 15674.7656 23023.8668 34195.874 16032.9778 16032.9778 22827.5751 33712.473 14122.7316 11828.7053 14570.1386 8012.2089 13722.0271 25323.0292 40666.8004 15169.4246 59739.5998 20546.2887 22949.5441 10029.7621 13271.6968 25352.6066 8226.1722 30066.0175 333959781 cysI Sulfur Other NA Serratia sp. AS13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 13819.0017 9145.1783 3720.3923 3403.2626 2104.6481 139478613 mer Metal Homeostasis Mercury Detoxification uncultured actinobacterium superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 7893.3051 3804.2583 3545.1058 2303.5736 27382.1399 9579.1974 5553.82 6472.6638 8825.5056 6313.9771 6313.9771 11801.083 11324.854 5354.4123 4805.8566 8927.1309 5001.3934 6370.0821 4128.5364 5440.5739 2593.485 10695.9115 5265.546 8589.0714 1801.8606 5654.5643 3499.3828 11090.1912 5409.0836 242221587 amyA Carbon Cycling Carbon degradation Starch Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 6749.9381 5290.1207 5378.4401 2798.336 40878.9018 10154.9392 3850.3283 15654.9888 7831.1119 94365.625 21346.956 4086.8747 14214.9952 14214.9952 5584.5972 21048.9299 8345.3728 16623.5745 122721.0682 97818.5304 5412.9287 23438.9286 11813.24355 15754.8899 10505.4567 18771.5329 4879.1326 2890.2954 6591.1243 35456.9599 389662725 arsc Metal Homeostasis Arsenic Detoxification Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 4772.1824 10124.8552 12351.3754 3112.7241 4392.5014 5757.5016 8493.0162 9302.5083 34918.4497 132737.5602 13227.1306 10213.8066 5163.9866 3483.3806 3483.3806 8867.1646 50339.754 9736.6267 6799.6255 16143.8583 7717.2226 2879.5123 6235.8891 14365.005 5166.726 22037.1314 11054.9013 12427.5668 6223.0329 7961.2923 12887.1871 7672.7137 5248.1035 237800946 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 40748.5317 60020.7611 39632.4454 4325.0129 5389.0519 5744.6724 54419.224 8452.932 15709.1636 36089.4218 165717.9882 15152.6419 54846.167 6911.798 4963.2829 4963.2829 6265.7607 15942.1247 12175.9928 27215.1267 49284.8637 12308.3295 7910.9139 5373.922 9010.8384 6270.7048 19401.3189 12567.9178 20549.2973 5326.4034 10052.9011 5894.8819 11316.9676 17379.8547 149927866 b_lactamase Virulence Antibiotic resistance Degradation Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 4292.5156 9195.4745 4134.1347 4482.3871 2783.3859 5753.3065 4319.286 3350.271 5837.9752 2190.0312 2190.0312 4626.612 7210.4254 5151.2499 3242.2626 2723.2199 9404.9362 4014.5003 11280.9348 4292.0079 4873.6368 3397.9372 5718.5675 6495.4609 316981166 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 123163.1316 21817.3924 207315.7988 206694.8164 90597.521 9142.978 46806.5 74584.9046 71700.8096 53563.9907 142672.6258 49932.849 1838298.5133 168460.6294 208379.1864 271395.9255 67545.4352 67545.4352 51877.2623 85560.64 56129.9433 80801.4104 118107.6779 89306.7095 35791.3864 41504.8831 66394.0864 46176.3518 135359.3822 49162.4123 83990.5921 23848.1138 40464.1648 73904.8326 28896.882 79142.0193 93356493 proO Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 70711.3165 172451.4005 25602.3414 56297.0764 10497.1615 21787.9285 152026.3131 78201.9327 56137.5594 86316.3589 86780.8862 1043420.4462 85683.1703 84004.6837 114739.3145 45304.4963 45304.4963 40256.9461 111730.5173 71514.988 69287.7678 125215.6985 106487.6169 48023.4332 72056.3001 59663.763 315611.6098 180451.2601 91505.9526 120113.988 31288.9554 69016.0451 74002.466 42656.4302 75253.4326 339883171 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 8865.0287 12826.2718 2942.8215 4453.2086 4193.6596 108749.2533 5140.2179 4009.9036 4656.2847 11827.3776 35979.8125 4619.5834 8948.5958 11288.6449 5690.7404 3041.8818 13270.9911 2583.8098 13017.521 9269.5879 10104.7207 3548.7423 5241.3768 5887.639 3052.4306 7506.2561 390569945 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 7819.6234 5466.0271 4677.6112 6155.658 4846.5439 4555.4653 4778.4977 33561.6556 6925.4349 21173.335 5210.6727 3516.0201 3516.0201 5711.8051 103784.7608 12310.6147 6243.209 2892.5045 5946.0629 5870.7807 12781.4635 18445.6825 9135.5706 7471.0715 5602.8845 9872.2559 17083.0002 5881.795 7332.8097 390120621 ppx Phosphorus Polyphosphate degradation NA Opitutaceae bacterium TAV1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 60868.2008 16293.0377 76032.54 23618.6375 21595.0183 17831.5327 35151.1777 72174.7244 31120.6107 85925.1712 33468.708 366726.7176 23496.2305 44516.1294 30151.3533 116181.3105 116181.3105 29921.7001 51142.1648 32896.9377 38994.8189 59364.6565 30728.7922 22988.8421 25660.0264 34147.8061 52957.8721 86978.2767 39192.2942 38856.5415 42808.3671 59702.8446 42794.547 14570.4846 52920.3527 296426429 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6609.7796 4777.1837 8406.3213 8356.7601 53747.9622 46352.1957 11712.7552 19398.3806 8992.2081 219127.5424 14754.5883 16860.724 39427.1451 14207.3958 14207.3958 6911.5444 57145.7815 15433.0991 19549.7661 11388.2937 5806.2522 5948.1394 13470.4423 11628.0819 63990.9063 54102.1214 11389.6233 16163.506 25027.914 16597.7343 10230.4868 15290.3554 17362.4969 229335584 Sir Sulfur sulfite reduction NA Vibrio cholerae 12129(1) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 35443.2751 33019.1959 9013.9109 65874.1584 25729.1782 12852.3342 13240.0284 70203.7168 21692.7567 28249.3834 19826.3394 21299.2921 357260.1294 40711.6602 75420.7572 31185.369 35071.672 35071.672 31903.7714 35189.6004 39471.84 70694.6766 162168.5562 16170.3295 20228.3381 24444.3814 68839.2727 48381.4256 95225.9395 176986.7637 64214.1944 49123.4988 34396.2444 76571.2368 26554.8529 35033.2088 381388342 ppk Phosphorus Polyphosphate synthesis NA Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 37716.7927 717916.9118 16229.1446 14407.2292 72933.1595 15905.7105 16735.8464 88702.5877 28000.6428 24233.009 30810.7899 31407.3234 404246.3599 64794.9494 29659.8258 26477.6368 28526.5888 28526.5888 34777.4307 49396.9116 39990.3189 218832.0726 62863.0929 33050.0469 25040.6415 22127.9558 33763.7594 82279.6295 663096.3551 32984.763 55656.277 24100.2649 233146.0014 44345.899 25155.1577 49695.6559 376385803 catb Organic Remediation Aromatics BTEX and related aromatics Klebsiella oxytoca 10-5245 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 7148.5596 14793.0441 4474.0815 2933.2531 2024.767 12808.5948 9331.088 5987.4521 145965.4816 4651.6019 8565.9725 8358.9223 6776.2475 6776.2475 3527.9499 22496.0278 6073.6396 7416.2546 10177.6679 51192.01 6686.7966 5654.5305 25032.0747 10935.4884 20426.2958 5112.2869 17364.5659 3652.163 8774.8137 6103.6203 4924.6695 29728.4198 295675251 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13061.5725 23615.3679 13859.5445 13507.1366 8085.8164 13636.7185 7853.2375 8250.1542 12815.6271 10732.7968 5822.5411 253354.8019 12654.3498 14168.3993 8415.3951 6783.8623 6783.8623 9368.0123 22772.407 14788.1826 16890.2337 20462.8702 21151.6601 6894.2786 6827.874 18236.879 7943.7666 32188.353 20483.2748 17554.0957 7743.5262 9434.7091 11096.2826 8477.8186 23401.6111 300665820 pgk Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7994.2508 8371.7924 8629.9554 6285.2633 5149.5002 3624.4398 9232.7891 13279.418 2846.4336 194233.1501 7882.5528 10112.541 6204.0216 3450.806 3450.806 8955.1663 12980.1278 9644.2348 9463.0574 7468.3158 11408.2112 3301.4265 4489.1255 13384.2612 5582.5372 30160.3971 9357.6125 10349.6703 10260.3564 5228.1525 6741.831 5801.8649 11755.5167 163260411 amyA Carbon Cycling Carbon degradation Starch Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 6608.7144 4587.8197 2437.4223 149917.0501 5926.8857 12488.8195 9620.5064 6169.9874 11419.1629 5326.2657 2227.556 2227.556 2798.4591 9627.552 4445.6157 3784.2562 5094.4484 1085378.1602 4378.7839 3760.2409 5869.9381 9446.1176 10113.4976 11743.6188 8593.9758 2994.5432 3895.5437 4144.9402 3441.473 28484.4506 298509760 dsra Sulfur sulfite reduction NA Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 31555.9887 30231.0887 13934.4138 15952.7948 31343.2297 10862.1109 16137.1979 17971.1584 12195.2148 87076.1656 41369.973 10117.3775 10117.3775 7583.2937 29074.4598 13825.1598 35495.6808 5063.2902 25478.8835 6886.9242 7476.1019 8302.4285 16390.7372 18140.6555 34234.5818 79776.6505 7668.6063 40654.892 12809.5439 14303.3389 10019.9652 320108613 cellobiase Carbon Cycling Carbon degradation Cellulose Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 5467.5732 19986.2858 7448.8065 3419.9183 4022.8141 2628.0451 3192.232 4832.377 4241.241 72492.0288 6378.0058 5332.4219 13667.13 4348.8596 4348.8596 39224.2108 9288.6935 3498.3153 7439.2304 7049.5458 7444.7044 3665.7973 3647.1112 6793.4752 3472.0445 12708.3993 5115.1164 6867.7748 7385.2103 4350.1369 9652.3255 3178.925 325951852 urec Nitrogen Ammonification NA Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 227994.8071 252565.3355 34817.7256 56078.761 6029.4358 24009.7875 197906.8044 33771.877 57022.2532 49693.2075 51221.3319 1050964.1524 675586.1223 81246.2613 67308.6118 206815.0601 206815.0601 52868.4 58969.6096 37929.619 49401.5557 93356.6684 54389.1809 34650.3039 41223.5415 45187.413 45413.1521 89458.7078 80730.5811 57852.0446 24367.2228 55000.0689 50328.5493 72264.3877 30915.3435 422314301 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6408.9135 20080.7935 6294.9398 2226.7955 8536.3205 5751.2844 6271.3213 4809.9479 337268511 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 14829.578 71145.954 22101.1994 4700.3215 24394.2085 38173.7507 2806.5303 8300.6575 15685.9267 25133.5671 145306.4318 16622.2038 107020.3381 87376.7751 14143.9017 14143.9017 12492.9441 32026.2788 10460.0076 121864.6703 19233.2425 19511.8819 5131.2768 14128.1329 56135.3446 43144.31 25546.5535 18124.7887 19000.3046 19830.6751 10867.9388 12834.0071 6065.4242 21138.6647 336068935 nosz Nitrogen Denitrification NA Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 131585.482 18644.475 47753.7332 40539.5409 30449.7746 87409.0183 116087.115 38477.4993 157084.8018 53940.9207 89512.0985 963816.6644 107605.4625 92783.0041 158129.3625 93668.1532 93668.1532 106725.5257 105409.7021 50945.8157 122548.6235 134448.0281 111732.603 46137.3888 67812.8762 79119.8144 85708.2796 223529.1494 50143.0813 79109.9764 50038.7922 71377.886 98984.894 38374.4768 94953.7396 83590610 bphF1 Organic Remediation Aromatics Polycyclic aromatics Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 75807.9613 12325.9816 69539.4381 38359.9555 36913.0472 9361.1516 71312.5378 332934.2501 60567.7451 52689.1278 113904.2037 51828.999 1681387.3706 69840.8976 71195.535 92446.6581 59475.2787 59475.2787 46668.4041 104253.3332 60638.2001 83519.4318 157301.568 97016.1302 42709.0634 39468.4692 65897.2522 60324.9229 150840.1678 75831.5356 76172.5811 30415.8992 51428.0828 72042.1982 32877.4485 65764.3729 116634771 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 290118.0689 11502.4775 114767496 cmci Organic Remediation Aromatics Other aromatics Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 830307.7079 16345.9366 265658.2427 18519.5965 9448.0155 11619.6673 30111.9951 52088.5523 44904.7799 52112.3674 61448.9635 520592.8764 74764.9918 37359.9337 56649.2931 55331.7022 55331.7022 39410.3942 111202.4749 29436.2467 45957.0633 231430.7739 31665.8172 62731.602 51550.258 38854.0613 76664.3458 111301.4348 32118.1657 60323.2134 73315.1715 45973.6974 55130.5482 107706.5763 147303.0491 239800225 vana Carbon Cycling Carbon degradation Vanillin/Lignin Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 52091.172 7408.3851 20954.307 26952.1792 8736.5085 21855.9947 10846.7207 5272.4713 12139.1684 82792.8747 8809.0952 268754.2681 17269.6445 21123.6925 13153.8269 8687.3491 8687.3491 10440.6189 38538.723 36417.1323 19771.7069 30367.0782 25000.1315 8180.4434 24798.3925 39719.0703 7735.495 37047.4725 21717.4003 23521.8472 11563.6426 13946.4458 21567.6202 13194.3075 20474.4174 157804813 aps_apra Sulfur adenylylsulfate reductase NA Chromatium okenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Chromatium; 19523.5897 57071.0752 35477.6792 37839.1768 5498.2433 19990.29 189119.5518 131086.362 18038.5486 15724.6058 10755.7136 464855.4694 22991.6781 28692.5632 36439.4176 11522.3109 11522.3109 9002.0344 38453.2566 13847.2313 28640.2711 21748.5403 11945.4656 21492.2504 9257.8786 22292.0568 18157.9338 33778.5259 11958.769 16944.5076 9626.4763 50467.0408 13282.8638 11195.8375 26251.7141 51469810 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 4499.7668 25710.737 2585.2271 11318.1155 2991.4746 85182.1797 5914.9091 8377.2394 4685.2596 4685.2596 2591.4618 3968.9602 7137.2212 3725.0924 7998.5773 2880.0873 10700.5264 9615.6153 2133.519 315609063 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 11085.0938 10328.3302 4012.8067 5564.802 5455.5435 4536.1353 7296.584 4608.5422 7353.8129 8466.057 100530.3066 7591.5228 9136.8824 3474.5175 3474.5175 5893.4889 12014.9573 8102.4113 22926.3174 12085.2902 9676.9137 15305.2317 6770.957 11684.7754 15599.3145 16453.5306 7638.8661 14219.2427 5234.1879 8296.317 10195.6666 5248.7952 19183.7276 254271785 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 15390.523 10076.7955 59562.307 11779.2883 8670.4727 4998.897 4974.7014 14920.747 19013.9809 4851.8116 221563.8889 14673.8803 17841.9474 12425.79 7949.9271 7949.9271 5145.3352 13175.5939 11889.6109 4404.6066 5775.1669 8848.8654 7011.4292 7079.4323 43775.5481 5206.4571 20503.8679 10318.923 14451.1496 5114.3017 6668.354 7907.5503 5112.2836 9642.9196 336117002 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 50767.6088 15659.9502 29194.7458 46605.2 64269.0431 13518.3609 45151.8242 36261.3203 24271.4194 36784.0592 60781.2075 26734.9959 1267479.1708 46639.7035 134886.2871 63327.7997 35758.5708 35758.5708 30661.8006 73832.183 43050.9157 44320.4113 49090.9154 56088.7425 37074.9522 23257.5633 55236.0686 20777.8088 95453.2052 59075.0221 72303.1214 24301.0001 34677.1355 35197.9897 26179.9941 86645.1289 356675424 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6289.8727 14320.6266 3984.8293 2516.6788 4130.4699 20148.6916 125936.3223 5248.457 7510.7393 11814.0688 11814.0688 9174.8578 5729.2648 3823.9607 6093.3055 2341.4019 8766.8881 2412.6118 5162.499 8043.1838 2161.4311 3743.0027 3305.2453 2623.3253 113953641 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33571.2053 34967.4548 137883.053 39284.9008 19015.9864 11169.1775 25153.8079 29343.1261 19683.2954 25441.5853 30157.5109 391938.7335 42716.71 31628.1131 41601.2795 20239.7052 20239.7052 32413.7994 52679.8419 37868.1983 36576.3673 47619.6817 55542.2207 16411.6918 19388.0545 33106.7507 15897.5931 67504.3348 31315.6612 36347.6942 17798.5279 24562.7029 20105.5285 35355.6227 39058.3335 151422447 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 6820.9662 7281.516 24193.8001 2699.7399 2596.1608 5071.3944 148764.0496 6076.3772 4579.8755 3768.0994 4449.308 7287.4623 6258.5843 8243.947 2425.9814 10332.9361 6275.7279 7205.0016 2689.8344 5255.0157 2453.2997 341615802 ppx Phosphorus Polyphosphate degradation NA Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 170718.3583 72598.184 19281.0569 42611.5329 5365.4177 28351.6758 55729.8898 14530.5616 32409.5607 59275.9406 73946.2968 1405893.4971 86136.8195 93930.4089 37627.7311 110693.1289 110693.1289 75758.9099 92842.8074 46405.7332 60103.7301 93889.993 40579.8458 41557.3787 65303.2052 62511.1665 54759.8977 85098.3462 185392.0395 51591.7764 22634.096 51699.4918 175948.9242 49485.3289 82449.4619 307727438 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13030.7589 12178.0687 25394.8589 23105.0615 22366.6139 4959.8187 16486.0078 4567.3988 24908.63 11116.1654 9729.3239 239679.6743 11088.6096 57822.2232 15987.4137 22589.0025 22589.0025 8030.0578 42677.53 11068.8517 16482.4659 35236.6331 31683.9855 24800.6228 257972.2133 15088.2716 111889.2676 146494.6675 21337.7149 20893.189 7876.8896 29626.3718 164580.1177 13961.808 14698.022 338171300 cpna Organic Remediation Other Hydrocarbons NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4507.6067 5819.1233 11272.8899 2740.5646 4509.1174 5253.4843 7601.8374 2815.0935 86279.6377 4038.0452 7874.2681 5630.9689 4160.904 4160.904 11815.1093 6989.1783 3967.2264 5695.8761 45164.3156 3816.9536 12405.9652 12298.3683 12884.1015 6807.9534 8871.9042 9578.1595 7468.0403 4000.004 6563.5463 9023.7022 88808667 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6728.1502 7570.8464 9672.1463 7341.1413 4295.3398 3274.5238 6604.7778 7510.509 2652.3813 199621.862 8937.0683 6420.3598 5270.7144 4388.8265 4388.8265 6131.9306 13291.8917 9713.1247 10641.7887 10207.5412 9035.4283 4205.355 3876.7129 10775.4078 4919.5578 14261.3595 7369.0947 9436.3714 5288.8353 5417.8753 6178.1367 4514.248 13281.8727 298550441 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 8649.9993 9206.0936 41894.5614 19664.6061 7891.712 3752.645 11635.5496 15700.9697 8916.9474 14813.7159 9754.4871 172645.4297 14917.9456 33963.7103 13240.2925 8044.9883 8044.9883 4172.2399 13589.6595 12707.5599 5262.5222 7562.8319 10186.3388 4792.8666 7688.0634 21216.7097 14952.5263 25227.0988 27090.7718 18892.9373 7960.0121 6377.2786 12044.1539 6010.0954 46180.4933 115363955 cysJ Sulfur Reduction NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 115253.5754 47465.2102 7655.3959 96499.6192 14688.9764 4160.8886 28043.8091 51793.1114 12270.6094 25702.2525 10186.6385 334420.4074 29675.4314 20817.3327 36289.5178 53153.3423 53153.3423 26203.8625 22450.0775 19770.7299 9590.1652 10318.9583 41905.8388 8425.0718 7907.6511 27757.6863 9458.0681 30007.5313 36146.9154 33503.8037 6899.2626 9690.7252 12178.928 6485.8969 9264.7447 323365200 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 134086.5724 59162.5661 129847.521 120000.7917 101786.7038 55775.6814 171551.6767 127308.8081 72717.3855 132684.1635 101885.1797 92439.6178 2124564.7767 160622.0109 135937.3232 180506.6239 136798.3603 136798.3603 249359.113 106083.9933 142787.8595 288139.9261 157136.2075 165964.1451 82216.5025 56717.6117 100219.8882 83699.1447 247945.4243 57740.7008 123087.1417 85564.8982 114487.6715 65193.6877 181443.2499 361551.8896 262316288 FBPase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 11635.5951 9374.4131 6860.0856 7933.2494 11581.3231 7720.8508 8661.7418 11870.1433 15502.0326 9320.9551 193069.4386 14327.3084 16491.499 11512.2308 5618.7965 5618.7965 7322.7915 22071.0922 11945.073 57386.6537 34932.6069 16758.1046 9928.908 7636.1971 16286.3319 17418.2391 39322.758 18726.4621 15222.4851 10407.8099 17531.4649 9513.4248 10287.9449 14153.916 34979594 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6377.9171 14438.7214 6380.519 27513.4623 10154.9919 12240.6845 34210.4911 5157.4179 331960.4122 18259.3891 5374.4416 7822.8594 3697.5789 3697.5789 4708.5424 12277.0334 9228.9652 8707.1713 9910.8149 10788.2496 7125.6921 5477.7692 11723.7898 57124.6705 17436.553 9671.9806 13400.2954 5910.1508 8321.2617 7683.624 4302.9709 11402.2547 2911478 amyA Carbon Cycling Carbon degradation Starch Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 102711.0262 5744.9066 5670.4487 7343.8647 5334.5441 24965.1214 101924.9673 14885.2462 16448.6023 42128.5376 294140.5933 10679.7345 37240.8202 8792.9053 11803.6872 11803.6872 10266.8988 32642.6776 22345.8187 19172.2503 10231.0295 44894.7061 26948.2405 21057.3073 23616.9688 10982.7965 54085.6128 27404.2809 38393.4328 8359.144 34689.635 24588.3115 30853.1152 18678.3655 237685241 trze Organic Remediation Herbicides related compound NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 4532.4095 123645.7258 4452.8296 6906.3136 3330.9832 3877.0986 4195.132 4042.8153 3290.8882 3290.8882 2662.7107 10515.0768 5459.8054 4325.1919 7632.52 5779.6711 3291.9046 2398.4493 10836.9833 2314.4765 8851.3634 6399.3577 5676.6266 2652.1376 3394.7387 6114.5411 261855026 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 7819.8899 4046.9341 47894.5709 13669.277 5458.1976 4055.0314 65187.1376 13321.3714 15082.9906 4790.7047 347539284 nirb Nitrogen Assimilatory N reduction NA Pseudogulbenkiania sp. NH8B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 6031.1243 11629.1512 6049.6409 8043.9829 6706.6486 4054.73 3572.3937 4741.8941 5114.2956 5956.362 172080.3774 7667.2002 6653.1425 6429.7155 3599.1773 3599.1773 3094.5853 15700.892 5593.825 8241.3062 7696.1213 34330.1639 3971.9873 7469.1081 10318.8697 4319.5088 15388.2112 7404.6713 9716.284 4926.6927 7258.2128 4483.2029 5333.4318 8514.4653 119410584 rgh Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8978.4004 4300.1673 2263.0376 2792.1541 5769.4163 2722.2517 56891.732 6245.1832 3516.297 43493.1678 8110.066 11294.3308 9384.1707 5662.0008 6956.6304 9274.3608 3490.2349 2506.8571 5306.7129 2316.0965 11530.1854 5140.6241 24749.1178 4478.9674 2795.0719 7542.885 3884.6765 29815.709 326210130 bphc Organic Remediation Aromatics Polycyclic aromatics Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 13630.2949 7932.0701 6385.7929 16272.399 3884.1556 16575.6384 8645.2422 12717.5993 11639.9246 22553.4873 205675.0996 15634.5502 35802.3346 14858.1469 11761.8654 11761.8654 8170.1036 22492.805 21285.4645 11335.8604 20530.1065 11706.2678 9448.9394 11857.5579 20348.8181 20947.2056 28527.7562 13921.3485 20997.9346 34687.9839 15871.1367 14542.3329 15254.4606 18024.3933 315182501 pme Carbon Cycling Carbon degradation Pectin Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 278171.8395 6196.4487 1797.0477 5922.5348 296170923 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 50480.0939 46448.5928 26756.7078 10070.3394 31468.7494 28760.5787 92628.4571 24642.5568 21657.635 41393.9782 31499.2255 568882.9313 25367.9109 103399.8047 53433.1497 42100.7693 42100.7693 53695.8273 55985.6727 27293.4295 54583.1554 50922.0644 264005.0547 88692.4109 25938.8231 101323.4233 25077.5273 443040.7309 45389.8205 73042.6372 17122.0742 25646.6 36375.9314 20944.6896 37334.7882 198262767 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6297.1944 3665.6209 2346.7264 2346.7264 19036.4194 4425.0005 5605.7827 3816.7849 3910.6897 2008.9365 171851201 ppx Phosphorus Polyphosphate degradation NA Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 14927.8712 43810.1666 5579.2458 16123.7692 10727.7715 261905.753 16288.9455 5422.6335 10031.7915 19567.208 14357.2512 323907.1432 17631.6149 25415.5622 13952.4156 18411.1324 18411.1324 9823.4965 25527.435 12849.2067 17666.5087 22705.8608 15355.1987 8196.0798 8040.9988 20335.0986 6574.8812 37158.357 17181.2044 25444.659 11017.8488 11355.9525 10260.1369 30384.8146 24348.588 86281226 phn Organic Remediation Herbicides related compound NA Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 5815.5652 5740.3883 12784.7272 9319.6751 4739.2909 6587.648 3048.4902 7073.1286 2503.1445 88012.8105 5575.1842 6474.9658 10133.5095 5710.716 5710.716 12206.4958 6716.8098 6990.4511 16128.4207 7619.5232 3162.2631 2909.2457 9404.7227 5097.366 14256.8653 8802.6188 10350.3035 3433.1003 4825.8832 22486.9248 3204.784 4740.3314 119376796 poba Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 29979.6924 79355.9911 72326.70695 13134.47675 11462.05905 56708.19555 20787.37935 26463.16715 25243.71745 402952.0312 8941.8187 26558.7113 12293.1846 12430.2451 12430.2451 3396.3246 17696.04965 10147.1651 8536.6244 12585.9568 9725.8322 6576.2297 8838.11325 19633.59685 31235.1629 37003.12385 75629.5461 13190.04665 21181.73045 70177.6823 66687.3547 13321.5538 338741365 B_lactamase_A Virulence Antibiotic resistance Degradation Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5277.5936 5304.0767 30930.3683 2263.6656 9147.5761 3656.7782 6749.3467 2458.3739 82136.3338 3540.5551 4791.8096 3960.6209 3445.0994 8247.3557 6771.386 122486.9892 5020.6656 5555.5839 2631.2183 3915.4199 7313.933 8484.8875 10526.1291 5913.9339 14390.8835 2574.4798 3494.4234 12944.2239 2181.1006 18262.9981 292677082 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 7420.8577 4219.1299 5281.56 3396.5347 3448.9386 7912.4755 16429.6763 83012.7139 9620.7024 5277.6959 4100.8983 6900.4022 6900.4022 2784.784 10235.0904 4018.1397 2448.3459 298406.1217 2827.5266 5872.3551 3816.7814 3233.6145 3315.6419 3994.4952 5731.2011 94554376 cellobiase Carbon Cycling Carbon degradation Cellulose Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 8135.1362 4347.1653 31874.7286 11465.654 3801.2901 5774.4216 33424.0106 4119.5936 5216.3941 4142.4139 142293.0106 5911.8578 6606.1809 10001.2354 6530.2893 6530.2893 6116.6479 7756.9984 6808.3389 3985.376 4121.8094 14145.9408 2569.7111 15682.8457 9768.3605 12438.6239 3313.1372 4580.5601 6151.6446 2540.2551 18411.4932 304438648 amyA Carbon Cycling Carbon degradation Starch Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 60602.4259 46981.5391 8661.9954 10123.9864 5168.6467 4676.844 9359.3049 2500.1476 5393.5207 11723.8782 4970.5521 126781.7857 10254.5798 9817.2262 7145.4609 13014.1681 13014.1681 8845.1933 13589.2599 14233.175 58893.4571 14079.2896 7793.2093 6275.7712 7878.7808 17089.4423 6890.3009 40886.0146 12580.0517 18233.094 5470.2419 9764.7895 9826.3161 7386.7691 13062.9391 325336503 ppx Phosphorus Polyphosphate degradation NA Riemerella anatipestifer RA-GD superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Riemerella;species:Riemerella anatipestifer; 7041.4787 5401.8691 3807.8813 3488.3462 4306.848 4505.2454 5049.631 3053.9653 207076.0878 8223.6257 8001.9197 4045.3082 2964.7485 2964.7485 4753.7163 11912.2133 8024.8371 9790.0564 10323.6884 16687.237 3914.7882 4835.6666 10112.5315 3179.0263 17315.4719 10352.1009 3154.0829 6006.9466 5430.0301 3738.9137 11702.5253 323149226 mg_chelatase Secondary metabolism Pigments Chlorophyll Coccomyxa sp. C-169 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;family:Coccomyxaceae;genus:Coccomyxa;species:Coccomyxa subellipsoidea; 43886.4799 34476.3192 16256.3172 984921.3966 20656.7834 38670.8923 38856.1099 18384.1856 30590.285 22549.5833 43086.7315 24383.0476 471762.1656 27853.3739 27043.7341 29108.8774 56515.155 56515.155 80832.3267 58396.7237 78423.3113 50393.5258 62219.9867 109013.5226 96385.7927 20788.2861 33601.9335 27671.5874 91969.4992 38977.7734 57941.7795 17780.3104 35031.6555 38219.6554 20689.3912 170959.6003 289522229 arsc Metal Homeostasis Arsenic Detoxification Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 5496.7215 7295.5874 4508.0697 4592.535 6723.8289 2329993 dsra Sulfur sulfite reduction NA Desulfovibrio simplex superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4598.8139 4518.142 2085.6622 3100.4328 3710.4463 6536.0105 105461.7599 4137.7262 4162.765 1718.4676 1718.4676 2786.2165 6146.0041 5063.8306 3881.5369 5815.8603 4357.8529 2273.6134 2815.1127 5495.9716 2306.444 12111.4051 4996.3858 2215.5312 4492.0398 4433.754 5005.2663 112441814 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5549.6639 3001.9076 3454.3804 4194.8479 2579.0117 101980.6741 8803.0492 13105.9325 2764.1129 2764.1129 6708.6277 4955.9366 4362.6855 6405.5656 3159.6042 8270.752 6238.1717 3803.2245 33858.7638 5479.7589 7037.4537 3694.5458 3619.3244 18949.3319 8885.9009 7354.8884 221204231 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 749017.8418 136511.4435 270030.5169 665279.9463 246278.0604 332384.6729 498698.675 411341.9579 451004.6638 256540.1637 373865.2578 261158.421 16697096.6114 227047.3115 471785.8118 547361.5339 423025.3026 423025.3026 275076.8266 355776.3475 279703.5718 307203.0038 391679.3617 318358.5875 222726.4906 222598.227 303011.0419 256923.6627 612486.6896 569054.7147 375461.603 199414.2515 221525.5361 359973.5603 198356.7608 411592.1217 388602501 chitinase Carbon Cycling Carbon degradation Chitin Vibrio campbellii DS40M4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 17713.8097 7974.0556 20072.7243 15641.4291 22593.1054 13019.2967 9782.2034 8644.8009 14745.5476 20014.3401 95534.5598 254600.9185 35614.5168 25068.5211 41838.9124 11076.8977 11076.8977 10626.527 28549.0781 14617.3405 145806.0908 25480.7453 24612.8556 9544.6949 9965.907 27174.703 13198.7048 56328.1698 48086.9505 28266.2749 12925.8668 12258.806 11684.544 14974.4522 16672.9937 170093714 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 4892.6042 6960.1378 23082.5558 35416.4991 58561.8114 8655.8705 3959.2561 5178.3341 14155.8284 10917.7077 5558.9447 4961.1622 3736.3826 3664.55975 6180.8093 12847.0142 9356.4474 2137.6489 3624.4235 3922.3778 262353136 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 9986.8032 8625.3802 2492.273 2272.8047 2849.2667 6539.6588 78924.9981 3903.3066 5616.943 2304.3233 2304.3233 2967.0164 9320.6219 4441.8391 5672.1933 6885.5851 5704.1477 2195.7121 2509.6425 7809.4916 2002.9417 13054.8947 5011.0646 4004.7396 4247.6065 5786.235 333487316 phta Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7169.80545 7225.3928 3960.5165 2648.9388 4514.22 5862.34195 2611.5742 4570.385 14345.24195 29491.4261 3412.26435 3412.26435 7343.9828 5939.79545 5673.5539 5226.27365 16749.8696 9157.9836 3109.5789 6001.419 5397.452 20971.63565 4093.1827 8004.1461 4446.18785 3802.70145 3756.2185 2605.0025 159041427 dsra Sulfur sulfite reduction NA Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 18435.2985 13591.419 21123.1481 11066.3344 111290.9948 5974.4777 33736.9936 23853.7761 35120.3389 52871.8333 227524.478 34625.9392 20731.3161 15577.0363 10109.8236 10109.8236 6388.0961 43136.5243 13488.0222 28349.2783 28563.7023 29626.7373 8553.0561 36258.8868 52367.9737 11961.9409 34086.3902 25853.5902 19012.4359 17440.8741 17942.2912 10324.6696 7249.2747 27917.3582 15602407 amyA Carbon Cycling Carbon degradation Starch Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 72857.8192 37083.759 17780.3371 29813.3665 12105.7336 20623.7701 14948.5716 29645.6031 12464.3132 16561.226 26626.0641 238913.4848 12963.5967 25232.7946 32395.5831 10912.6324 10912.6324 14043.7258 24892.3693 16553.3887 18524.4906 20193.3103 20140.9769 12734.9437 12990.7407 26836.6832 11531.6348 58277.5214 22312.01 31639.7302 12306.2762 16925.3275 16661.3458 14411.4486 21937.691 71909399 xylg Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 19915.1418 3578.7762 3000.1727 6380.885 3687.169 90691.0902 4806.2188 7421.5192 7534.7094 2043.4752 2043.4752 10069.8583 6089.5769 5283.2319 6232.2162 2566.1776 2806.1473 2429.2855 15193.3751 6343.1414 5147.3577 2556.0826 3176.0503 3178.3422 5221.9564 407645679 poba Organic Remediation Aromatics Aromatic carboxylic acid Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 34806.711 55706.9911 22611.4683 19258.9723 22945.1331 8104.5968 18981.7856 25260.9061 36350.031 29215.1325 39721.9496 39511.1681 572172.0253 56753.5255 37275.702 31468.924 24216.9142 24216.9142 30164.1487 57012.452 43816.7091 41721.8292 55831.5461 91086.4131 23629.2397 27219.7403 55656.7543 18734.3794 84237.5093 78067.3061 53606.7114 22667.4904 38939.7949 37761.3614 23534.2958 53651.0865 226362007 vgb Virulence Antibiotic resistance Degradation Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 28579.9917 10200.5174 31053.8326 29221.723 36164.3926 10931.7215 34503.2401 34227.5849 52975.4121 29366.0446 30601.9141 17082.1928 660561.8288 37289.4537 38113.2065 24606.5446 16585.5568 16585.5568 16179.1903 37886.9496 28282.2682 35403.8248 33603.3788 33975.6637 15250.5344 17419.3294 130031.5286 63452.0021 65252.268 17907.045 35212.9477 18876.8587 15778.6576 23285.9955 84354.9849 40605.6125 88866201 poba Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 8046.9177 7603.7143 18953.9111 17448.2393 12737.6415 3431.1836 10659.7996 16634.9531 5698.0099 396698.794 23739.1657 19362.9433 33294.1823 15972.7577 15972.7577 5837.1575 11330.9516 10048.167 13801.2553 9718.6783 11179.1873 4413.8858 6280.797 13552.6308 5151.1533 16652.0453 3762.34195 15932.7244 4979.9086 5488.1881 6452.6857 4676.4214 10777.7677 338974789 alkk Organic Remediation Others NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 13937.4126 5565.1367 9257.24 9863.1568 9968.8297 5243.8815 7638.0141 6107.7895 36564.6151 108404.9695 10793.1715 5135.6066 2686.0207 2686.0207 7689.1976 35633.4698 10070.5866 6356.7304 8361.6164 5878.9661 11956.676 27993.01 10918.4771 12318.6948 15502.0151 8030.0447 12066.2306 5316.3686 5007.3049 4802.1804 11817.82 14614.4856 170181188 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 46562.3167 18531.8389 17292.7787 20414.3035 12288.6245 16176.5201 32138.0396 18954.4746 16002.1602 27850.0931 17531.1593 1937340.8002 109710.8925 26655.9885 47633.3896 13813.022 13813.022 73246.9708 36010.3328 31258.9985 14768.7877 25612.5745 24885.4017 17957.5073 20357.7756 23217.1379 32432.4125 58927.5233 17463.7178 28856.3161 13703.5975 16285.5224 24103.7489 16150.2803 23325.1068 147848730 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 13821.7542 7002.5627 5362.9669 2489.5716 3168.0777 2236.0512 13681.868 10401.3921 5455.7699 352918.5053 7616.1949 4933.406 7083.6464 17106.6227 17106.6227 4668.6154 18030.7916 6263.0905 13431.0252 17365.7045 4094.253 5394.267 22152.4163 5971.3491 22861.3187 11108.9383 10490.8445 4730.8267 4513.6144 6576.6891 3247.8234 8721.0202 89274947 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4768.5137 10639.9047 27512.5619 7253.5147 5335.8211 7499.8308 3962.0356 7136.2957 7475.0967 92669.7047 7002.0464 7488.5076 7712.9544 10197.8001 10197.8001 6053.181 14611.488 7028.8544 4872.2175 9737.8653 9862.8733 2168.47 8317.1713 13271.6833 14245.102 24057.9303 12619.5787 14145.2342 7613.1556 8487.995 20845.0216 3955.0554 9638.8936 283439056 amyA Carbon Cycling Carbon degradation Starch Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 42452.7771 6795.0281 17556.9394 6825.6563 4977.2948 22947.3168 8539.2231 10397.3757 14185.5217 110957.3354 4173.5525 7954.3695 42494.6808 12632.8647 12632.8647 16200.0592 9718.7899 177085.5771 16173.1379 17237.9727 9348.8657 41693.2059 10703.4146 17875.2352 28414.0991 16462.2105 12630.3379 33024.8916 6511.7214 28930.8241 9736.8455 35338.5405 323527974 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10436.3992 10179.5236 4704.2481 10892.6712 6003.5916 23627.3355 15322.4384 10740.7688 6875.4902 21279.1932 8719.1062 280315.4851 19728.9614 13662.5533 134926.7888 17989.3021 17989.3021 8940.283 29601.119 14239.2303 18262.033 14897.2767 17860.1011 10818.5278 8777.7362 16582.5833 33173.8337 49912.4844 15347.8513 37137.4317 12798.5601 14166.3496 20148.613 13866.6253 31414.7637 408418745 rd Organic Remediation Chlorinated solvents NA Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 35202.5665 42338.6682 34154.875 77871.5416 6428.2749 24486.218 56659.8386 12135.7027 26589.9077 40351.7704 24027.8174 903378.4735 25660.8324 29361.684 33724.8926 89008.7944 89008.7944 18692.6872 46318.0359 22491.7785 66968.0852 309167.8001 34080.5567 19653.4691 24830.2316 34974.3648 14662.2201 71376.9861 29891.5637 39251.7916 13042.0266 28375.2473 31576.5193 18087.0744 48521.2948 332747420 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 42284.6379 23260.0858 4195.0268 10936.7542 6756.2226 5150.2274 17250.0818 7452.9361 8955.3771 8495.22 113212.7533 45904.8865 245145.9458 24494.8437 19769.0749 19769.0749 6689.8341 68888.7545 30133.2423 16283.4845 6461.1503 24339.3825 16762.7989 57391.3394 7757.435 7990.4173 30973.6968 26596.0789 16685.5731 5663.5198 7337.3923 40565.4011 13020.0628 7047.331 390451811 ppx Phosphorus Polyphosphate degradation NA Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 55585.1092 27049.2465 16007.1307 216080.8234 33381.0553 9755.4915 53811.4892 19237.2659 24527.0906 24566.9059 26806.0174 1225071.3565 65410.7993 130689.9847 114440.119 55919.3181 55919.3181 16202.919 36873.3658 29565.4882 21739.2151 52181.8919 11308.1689 17362.6658 35884.5466 57135.8587 21788.4847 71580.1785 107516.4934 64436.6625 30134.4377 26773.5711 34824.4386 18397.5918 17529.035 219545143 dsra Sulfur sulfite reduction NA Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 22419.4559 462515.1516 64053.8326 7471.3769 4590.4707 3823.2041 17230.4033 88878.065 4583.1448 4651.6173 11268.3151 2911.4581 2911.4581 4023.6546 4066.9503 7444.0341 4362.6637 2265.401 6183.504 6508.1458 13073.757 2933.634 12054.8632 3053.5201 5742.5841 374607699 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 10555.4195 7362.4415 9513.2074 7784.6909 5156.1892 4883.4219 7941.3627 2955.0923 6329.0769 6613.0833 4541.0794 131498.9973 8781.7625 9076.6125 4962.328 4962.328 6118.6638 14731.912 16290.9463 11191.0835 19587.3221 10311.9187 4044.1921 6130.9009 12404.6833 4663.9065 21237.0298 8814.3748 15878.361 5876.186 10621.1987 11286.1133 5330.5214 16586.8034 94496202 phytase Phosphorus Phytic acid hydrolysis NA Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 14571.4196 14274.9737 18006.3303 40019.0769 14078.2919 7633.4403 10633.9772 2296.6666 9166.1556 54760.8855 9404.3902 227332.1427 19405.9975 20358.6917 21196.643 10523.2132 10523.2132 5627.7392 96313.2194 24387.0771 9322.1324 16762.3445 7395.1828 11090.2633 8704.3228 24081.4892 71707.3792 26749.1309 135615.531 30100.7455 10586.7048 10665.4824 10416.5881 17193.456 9327.2882 8118287 hcab Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 5218.8769 11394.9027 2408.7005 4931.3674 9278.4847 4938.916 239735.2604 105105.3676 14166.9978 5959.0104 4668.5681 4668.5681 6313.8296 13114.3464 30716.0466 18114.3488 3496.9251 5227.7097 4859.1455 3428.3762 16825.6312 18261.6762 6270.6862 3379.7923 8395.5225 18186.5999 3588.4657 6644.4582 209499614 mer Metal Homeostasis Mercury Detoxification Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 22411.0114 7325.8072 4068.0682 38408.6522 5241.7936 18136.226 5760.3229 8726.7296 7664.5338 7571.7284 14991.9312 9083.8591 4801.1969 17481.4086 10527.2916 10527.2916 7063.7883 10868.4505 12084.1978 5523.2675 102191.8989 5164.2169 7526.943 12095.0134 12367.3732 16250.1226 128365.7859 14288.1952 11673.9994 6394.2348 22646.9393 9864.6518 39140.3518 5927.4022 209958464 amyA Carbon Cycling Carbon degradation Starch Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 18017.6308 136572.6379 21335.161 22290.7024 6672.984 8602.2254 7226.9482 174949.0859 11749.2377 14873.0035 13237.5194 222597.3232 48913.5566 37520.4769 12947.5064 12164.3726 12164.3726 5205.4826 22711.3327 13075.9647 6221.2771 28879.8079 58114.1204 7887.0094 9840.8986 12936.43 5303.2602 46131.9564 24442.3539 23245.3619 8587.7185 19404.1653 25263.0881 122161.0467 9950.8249 285019798 poba Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 63675.9412 71920.834 107419.4742 28035.9502 23376.647 4537.3578 15190.3194 86279.7859 60705.9509 25764.3809 42881.016 37946.6337 761729.6472 23726.4786 38474.7179 68140.0175 81083.5412 81083.5412 13816.4955 60697.2388 35633.3066 90820.3976 71226.4198 193027.8991 33129.8159 24353.3033 45022.8876 17119.0165 101208.1411 53459.5974 42003.8246 13954.5919 48453.0524 56258.5639 13624.0255 46554.5762 386378538 chitinase Carbon Cycling Carbon degradation Chitin Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 7123.2113 5446.6803 4609.8468 2728.5481 2981.2504 21304.7573 13873.8108 147333.5384 12388.4279 6721.7765 6721.7765 9463.0529 32810.3458 72007.2567 47105.6771 8828.7056 558735.2171 29407.9492 4612.6567 4578.1582 31480.2084 16112.491 11594.5508 3234.1883 5079.1408 12694.6685 100336.0074 425225.4518 168193152 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 109053.5566 30830.6555 48602.8808 11625.1643 10685.8986 78877.3962 28811.0505 25074.8007 126938.8051 107266.6314 84672.5304 1240237.4075 42471.8525 64517.955 213239.1706 54411.9693 54411.9693 42487.9033 190269.7185 70066.1847 224338.2308 78449.3205 44753.4906 53898.7088 68822.175 48915.0094 38528.5103 111561.0764 132692.1392 60092.9358 17384.8359 59507.0138 64106.138 63284.0034 234788.476 311069865 cysJ Sulfur Reduction NA Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 4219.5086 4245.2554 3372.0935 5235.8615 4703.9308 5449.6412 2448.8906 88823.4051 9450.0694 6194.9329 3200.908 12780.2506 6358.6198 425487.7887 6454.3891 8211.8083 3156.819 3787.0025 3574.8355 9340.5682 6952.4915 9499.2652 4541.6535 5548.4988 3847.5808 3031.2482 7656.4333 293393835 cellobiase Carbon Cycling Carbon degradation Cellulose Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 18750.2301 53094.9463 8938.4578 5510.0211 26015.8805 4381.4799 10508.4025 7524.3241 22679.5886 7631.7072 101286.3085 7822.4277 25256.7854 11780.1015 5499.3855 5499.3855 2956.0599 7954.6597 5671.0388 4355.1093 6014.2003 8192.9546 3657.9822 8609.9099 10309.1085 5391.4876 8181.5845 18489.9956 8108.4798 3191.1725 4404.5865 5778.1879 2462.1093 8166.4911 346993697 phn Organic Remediation Herbicides related compound NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 47104.0023 18062.913 101466.5085 34325.289 54469.6346 10020.1964 17712.3533 792523.4852 130670.998 25546.9809 30820.7979 54825.6736 541186.0894 40779.7585 41396.5261 31231.247 42423.9446 42423.9446 20850.7603 63262.5798 506485.5337 1523325.7372 281666.9125 46196.7609 472264.7465 28758.8891 34004.6495 313308.3736 66946.0062 36029.3191 37713.8568 451724.2337 47016.2385 21916.0628 22438.0774 1174999.5725 375141882 urec Nitrogen Ammonification NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 20247.5134 17677.7263 30971.9557 16891.4862 9237.0846 19679.7667 9693.2336 6284.0181 16556.2262 21644.0453 12372.0156 363307.8702 14262.6888 13912.7053 12509.055 10106.8055 10106.8055 11457.0243 27230.7171 12553.4246 18511.3202 22058.6225 21307.4032 6049.3567 10946.1332 17268.291 15265.915 33225.6395 15533.9578 21751.0042 8904.5688 10505.3267 16560.4066 9871.8043 33659.5147 260062448 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 34019.4716 8747.438 22662.5776 7737.1448 8874.0084 49600.4392 8453.9101 21378.1246 29131.7987 273676.9831 18916.8725 46074.9726 17257.8336 15156.9554 15156.9554 19845.8987 26781.8656 16340.3576 120878.7409 192696.0228 27883.1325 10018.7369 16454.8657 14224.4564 98415.0399 43183.7613 31010.8796 73243.9152 7006.0599 16234.7458 17268.6728 8578.998 53192.7859 358244311 alkb Organic Remediation Other Hydrocarbons NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 39720.8697 29880.2813 10011.3631 2444.13 5930.9393 5928.1606 69251.1155 4318.4849 7373.5404 10673.6021 8938.9576 8443.4362 6474.1032 7047.7821 10085.0065 2850.7824 3111.3661 7359.2255 21970.6269 8578.3785 8746.9318 6575.6395 19113.1731 6029.1407 4504.2354 7355.3031 145316699 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 22670.1417 5869.0071 7414.6244 4834.5205 4133.5355 7547.7019 10420.1174 11643.2619 4907.7841 153955.1056 5839.0056 7097.4393 5662.5585 3373.4519 3373.4519 6174.4327 26005.6749 7661.6433 7633.5275 5300.4989 9987.249 3325.9486 9822.4831 2850.847 13678.7954 7444.1412 7787.0821 3838.1249 5327.8746 4814.3279 5321.2094 10657.0692 109290311 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8409.9188 1889.815 2732.094 3704.5244 6704.072 2408.2855 67785.921 7088.5148 7631.1147 2768.5774 11753.6347 5266.0837 6753.0673 9708.7725 6573.1041 2314.5754 2643.0847 8184.7079 2904.5171 9383.4882 5017.3572 6789.5161 4974.5529 5181.9191 6239.3803 3444.7812 7159.532 112464171 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7040.049 23068.5716 5276.8178 11456.0812 3773.8261 13221.9856 7971.0412 10313.7624 7945.5423 15675.961 80633.2145 12265.6355 34002.7303 10114.6466 11312.039 11312.039 6893.532 10417.9255 8069.1636 10171.604 11999.6228 4922.6801 7089.7495 9740.8786 7795.5552 10447.5075 25188.085 18962.5576 12255.7464 19960.8244 7349.65 11349.2517 8975.1628 16868.1278 112462895 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6867.8217 13226.0117 7847.4784 2950.8978 3646.0727 9865.2685 3395.1859 3395.1859 2949.0051 5718.771 6000.8499 2368.4681 3162.7795 5278.4858 2730.3573 4395.9351 3042.9282 4554.0049 213926938 amie Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 25095.0544 6511.2194 41952.5514 8729.7461 16132.2803 6699.3804 2412.478 19043.5238 7586.3786 6857.555 90984.3844 5628.3785 68370.2424 7006.5807 5405.3977 5405.3977 4310.9326 12875.702 7233.4464 6755.4592 6269.3055 9202.4891 10776.1717 6463.2153 10656.5952 3357.7092 9782.8165 4221.2425 7313.1521 5082.7348 3988.1034 7727.1016 3108.0908 4520.6042 383642351 amyA Carbon Cycling Carbon degradation Starch Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 22024.1965 10925.9179 39923.5712 8217.0886 6205.5626 11153.9154 8343.6866 7743.5912 7276.021 9643.2583 214200.2282 9973.3314 13138.8383 14828.4375 67756.5128 67756.5128 4520.474 24001.2639 8985.0156 17833.2791 54455.8653 12526.1076 3615.8462 13245.4796 18836.264 6759.005 29780.757 17921.056 15412.5145 9989.5422 7279.5242 15757.9281 7088.2367 5428.1222 323314295 nrfa Nitrogen Dissimilatory N reduction NA Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 9333.9105 5903.9796 7624.3242 3388.2128 6453.2708 5396.6882 6331.5071 6249.0184 14210.6377 5867.5326 8758.4822 8718.5759 4760.5479 9985.1871 3967.4585 5363.779 2774.6341 4202.6069 2488.5975 7244.563 319924368 terc Metal Homeostasis Tellurium Detoxification Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 4329.0035 3335.3504 4371.7818 9260.7263 2889.3413 2889.3413 5183.215 6046.8759 9082.0605 3040.948 126627815 phn Organic Remediation Herbicides related compound NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4000.5221 1373749.6884 330559.2622 69717.2933 5293.9568 4195.1659 3291.37 3291.37 2608.5357 18497.3879 6517.0827 5911.3108 3678.2431 3421.3614 3562.182 5106.1831 8568.5033 65854.1811 2243.3596 21424.977 161381248 arsc Metal Homeostasis Arsenic Detoxification Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 66868.2298 47329.7544 59776.3995 121649.8495 24024.0218 54229.547 64384.4673 36816.7787 74786.7063 177447.0222 61423.2014 1994208.9552 181011.5281 110518.8198 86690.0835 77437.3333 77437.3333 58095.5261 82611.7417 81034.9401 207997.0258 71611.503 69723.5019 41654.6784 81983.2929 74920.9931 51960.207 179539.7788 97580.6961 79922.8061 42258.311 77343.2999 61461.5306 51706.2378 84262.9888 62086133 bco Organic Remediation Aromatics Aromatic carboxylic acid Blastochloris sulfoviridis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Blastochloris; 26782.6112 25736.1146 23456.206 14039.2054 49115.5397 47926.967 17576.4814 55604.2668 36511.1082 67940.6739 373107.9068 52090.6792 98323.603 79626.2287 36618.3192 36618.3192 29593.1565 71076.056 25437.1722 76589.8308 46953.7049 18680.5687 12888.5385 28509.4468 54693.9146 35908.7315 130055.9444 88116.5323 40382.9736 56823.4051 47765.9967 41156.8057 20680.1684 50011.337 133912646 urec Nitrogen Ammonification NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 6732.5183 2084.5441 2690.9189 3540.9153 57268.7859 3645.7844 4753.9096 3760.0818 3760.0818 3009.6442 9100.895 6241.4327 6314.0714 6471.137 2807.4147 2676.2288 15229.7818 10250.6666 5034.7323 6768.1267 2591.8204 4198.5069 15666.9966 7807.2379 56809411 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6471.4112 2002.5927 3930.6201 4952.6025 7010.3008 2389.5778 122858.9203 9007.513 4811.1818 2158.6146 2158.6146 4322.5861 10286.5254 6233.4698 7035.7176 7107.3367 9842.9339 3086.1588 2991.0801 7055.7839 2441.6877 12260.544 4663.9823 6536.412 3808.0823 3457.4135 5979.4594 2477.7548 8349.6875 225568883 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 147815.6275 5639.0842 4169.981 4169.981 7064.5738 28327.4862 9577.3088 3503.5898 4392.4701 212531657 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 5715.5596 2825.2548 8966.5979 2411.4132 3691.9602 3781.3954 64012.9522 7286.9703 4824.0411 5525.4309 3092.8615 7805.6245 5446.1674 3612.5536 2919.6318 190890495 ppx Phosphorus Polyphosphate degradation NA Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 10547.9653 7762.3614 8728.0754 10072.8982 2530.8806 21854.4145 8968.7348 9796.663 5710.4386 302774.0732 5726.6807 5579.5451 5726.3959 3483.1434 3483.1434 15292.0935 10804.0772 20734.6569 16078.5691 15936.3548 5562.6661 7017.3171 4972.7801 10970.4485 8196.9214 15824.6028 24688.0412 13039.673 3400.2105 45009.4267 13647.5458 6847.8646 16486.4522 320123754 ben_bcla virulence NA NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 12461.977 9005.125 7856.3361 12800.4097 20858.5292 15890.1449 37973.9764 14303.6485 15927.4821 11188.8143 221823.8505 11106.9747 21034.1447 15118.3985 8615.523 8615.523 13614.5361 39890.7984 12651.0396 44213.5948 15091.8182 16610.404 6537.6742 10310.1218 16446.4376 8364.0428 38158.1798 15369.253 27958.2288 9053.6295 12398.4697 30559.7889 9441.0778 96522.3355 354605336 amyA Carbon Cycling Carbon degradation Starch Alistipes indistinctus YIT 12060 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 11010.369 6321.4812 6785.2959 8040.8869 8342.0365 7142.6052 4763.9358 5462.9991 9572.8835 3471.4736 240396.0093 15012.4464 40479.9033 6682.5064 2674.1096 2674.1096 7935.2577 16061.0967 9897.2558 12968.1619 14458.1639 11457.2292 7474.5002 8506.4139 12644.2273 5694.4521 24671.289 13445.6832 15627.2977 5822.2747 12844.4045 11293.0184 5861.9484 14910.0817 111148343 nirb Nitrogen Assimilatory N reduction NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 186348.3666 5158.1846 4632.2585 58344.2623 8683.3184 4019.9118 9267.7295 3465.0135 34883.7972 4105.2785 207349.6686 5300.2047 14254.8282 28661.0019 32629.1993 32629.1993 3528.3973 7604.0134 5616.8737 3247.9184 3308.5536 7948.6293 5070.3093 11688.3922 9640.4584 7517.2586 3791.9495 3979.5518 4197.2121 3654.9013 19817.3427 94471271 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 185878.6587 109223.2127 33445.1112 97414.537 25761.535 83102.5864 620672.9423 63349.9639 86649.5765 154815.21 160161.0901 2680236.6208 176660.5241 139856.3505 202800.4537 82994.1891 82994.1891 43024.0535 116733.9982 85995.68 246017.789 190298.2034 255094.0973 114436.6892 101827.6353 81982.3552 60047.472 407759.8275 142850.6216 152422.345 123610.8685 98706.6238 107205.6858 73085.1708 193954.7415 21229847 cmci Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 48969.9385 9860.2857 7976.8915 17853.8095 8510.1465 8070.5785 8116.4632 6772.8431 12076.0199 9366.4494 592412.259 9313.84 14523.9674 11009.7203 12827.8694 12827.8694 9240.6467 20893.9396 20301.1041 33303.9765 23723.7135 24677.4833 8444.8355 9081.9834 16065.4402 8854.9604 44132.7168 12428.1634 25631.6667 27543.9423 16106.6217 11564.7371 8095.0013 28046.297 150036142 SoxB Sulfur Sulfur Oxidation NA endosymbiont of Ifremeria nautilei superkingdom:Bacteria; 6264.7322 7717.8939 5663.3623 7375.4852 4032.6419 16548.343 2075.4273 4629.1144 398038886 tfda Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 33010.5369 10381.0606 7764.5661 44906.7304 17330.417 4180.2453 104583.4695 16384.2048 12217.8135 18966.6489 61970.8837 414685.4809 21432.4053 19846.2079 59714.5583 13256.6921 13256.6921 7793.085 25323.4918 19065.7804 27106.1198 39003.0391 25884.2318 16256.0149 27534.8559 21540.8229 35999.4539 46656.4297 32442.2955 20057.587 38549.813 13318.0002 36753.1937 12817.4399 22420.4369 148756010 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8423.6558 79442.6986 8923.5045 16149.894 5483.9559 7921.0422 16658.8002 35246.8135 8027.8475 20034.5408 19403.0754 202660.3251 13419.8879 27541.2719 6087.6143 6782.5116 6782.5116 4468.074 104496.8435 13245.3137 17411.4098 32286.7284 7285.7682 8847.9664 11075.3385 23724.0949 11609.0445 45979.3611 16323.9772 14964.7433 10075.2999 11236.5823 23192.1526 26473.4047 10301.7389 171915122 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 15179.1017 4366.506 5933.0496 6159.1918 5924.1001 3919.977 6152.0878 8968.7562 4150.3969 62416.45 6798.4106 8476.4836 12650.0407 12650.0407 19539.1271 4542.8184 9353.2929 22688.248 4690.7202 6773.1027 6041.806 13418.0011 11255.406 16395.9119 9876.4909 10580.0661 2789.6881 4998.5815 7819.6843 6376.5068 12517.7984 218564160 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 30102.8743 13838.746 34020.1618 33033.489 7339.106 376176.4903 19791.8473 11461.3499 27453.3521 34786.9834 26037.949 978290.0107 34075.9686 26322.1158 30597.5449 34054.9066 34054.9066 22903.2767 29136.271 22095.7994 23236.4712 28663.0715 40459.1932 19063.952 28104.5609 40049.7088 26590.3448 100360.9677 26784.3566 34679.8348 19077.2285 25051.4217 19101.9273 15472.8068 35226.2773 219679499 cpna Organic Remediation Other Hydrocarbons NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9064.4446 7815.3171 31607.7116 13149.7071 5837.8314 5401.592 8722.447 6852.4955 116531.9136 12227.7013 10097.4498 35837.6796 17695.8109 17695.8109 18663.7652 15536.4927 12432.5901 9567.1195 17853.6706 5162.4737 6379.0613 9762.9151 15788.1655 8751.5623 45423.151 27939.4269 17448.9463 3514.5179 7260.2849 6777.4832 2586.1284 422314079 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15850.7327 36521.6439 15856.9286 12743.6905 13531.7052 9771.0181 14897.5551 9142.002 113355.8851 10533.0207 13380.9277 8566.7914 288508.3511 10416.9718 20441.0564 18130.8967 14598.2069 14598.2069 7733.9462 17900.1876 13698.536 20058.1162 12252.6115 17262.7217 6795.4651 9085.5307 22707.6316 5708.4461 23684.5165 13794.4829 21314.9097 5537.6155 8585.6405 9071.6307 7904.2792 14253.2466 221084226 tfda Organic Remediation Aromatics Chlorinated aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 26835.2583 13477.9059 27387.2461 15764.0891 13287.5875 10123.3882 35272.6634 39476.1882 20832.6987 26045.3831 119648.8659 30366.6088 12465.1434 23838.2987 13851.5609 13851.5609 5601.1825 52676.0571 20136.7182 18558.1791 16566.7488 9716.114 9606.0534 18288.4082 23234.4671 14444.935 38450.3372 18317.7089 22456.2399 12615.7931 16365.8669 25333.787 16036.1501 16313.4562 149201941 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 19458.0733 40219.2412 23078.6192 9087.3273 4658.8802 18657.5396 24142.5216 9503.7141 11662.4355 21404.3929 12214.6712 250819.1494 17847.0397 16745.2053 17166.0212 6630.5436 6630.5436 10030.4516 39791.2593 14660.5187 16065.2347 16649.1946 136807.7969 17558.2329 9372.6688 22026.3184 21614.6019 40085.2192 18939.9434 23208.0429 20175.831 13026.5525 36073.1191 10813.6044 20293.1571 323468428 terc Metal Homeostasis Tellurium Detoxification Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 107906.1862 61124.3801 149906.495 1030409.3226 66646.4864 38794.4435 119252.0766 86429.7048 39717.5507 51995.6258 101992.9296 100303.2041 1518437.1661 92153.6066 166304.6672 308873.8831 108903.1314 108903.1314 33950.7669 152063.2808 69816.964 141109.2585 76168.9536 89280.6474 57147.2452 150266.7084 65081.7176 103729.8942 185244.9215 68073.9147 100270.8722 84626.9016 69422.6391 85086.4129 48429.462 87417.2607 222543298 cellobiase Carbon Cycling Carbon degradation Cellulose Micrococcus antarcticus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus; 13816.2782 16946.1951 27532.107 4833.4791 4973.7228 3179.4586 5400.7658 13049.0484 15266.1708 191790.4563 23342.2299 8334.2452 23859.8751 10946.9357 10946.9357 26064.5091 21077.0348 8284.1203 12334.0451 21257.9825 16475.4754 9616.5304 7605.4456 9967.4684 8753.1617 24124.3646 33785.2044 28270.1051 6944.3485 22687.9135 18787.2765 7064.7226 14491.5109 359145569 xylc Organic Remediation Aromatics BTEX and related aromatics Streptomyces sp. S4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 21127.8897 66055.9273 44815.5562 33162.0148 88554.7266 6765.7894 7502.0462 9132.6739 11690.7068 18283.4614 8650.9495 309006.3543 13073.3365 11467.7866 45893.2083 12144.3579 12144.3579 11822.8073 36987.1758 17275.1602 26107.7129 25097.7591 18229.5987 8752.5225 8941.7579 21137.1635 13509.3194 33675.3465 17570.0606 20911.893 13544.5163 17622.9885 14801.3964 9291.0442 14019.0873 374320561 arsc Metal Homeostasis Arsenic Detoxification Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 21922.0247 13497.6246 11567.8968 18811.4808 9684.5103 6217.7174 37720.9974 169783.3191 34848.4964 18997.6462 22462.2302 17899.1192 485198.2292 21791.6774 61050.6291 21462.6092 12140.2589 12140.2589 11943.3194 24767.7625 15842.9425 24603.6424 29150.989 35561.7751 13772.6486 11810.3384 30051.3431 93701.5175 90246.6832 15344.9995 26511.061 33260.9322 15145.7568 15462.4008 14859.9975 58821.6769 359838840 pula Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 440561.1383 11744.27 8562.0269 12400.5505 32933.0571 17939.1576 48566.115 13571.9737 7306.2322 12173.6035 13274.3664 12692.6266 202985.4493 16653.8605 23071.8273 22273.7194 17955.686 17955.686 31543.9205 37106.4642 23751.4627 16920.3693 15342.6787 20208.3723 9788.922 14621.2628 21595.4638 13682.8554 35094.0743 14387.2195 26334.2339 78854.9115 21648.6592 19629.5736 12775.6453 49317.5387 70727536 amyA Carbon Cycling Carbon degradation Starch Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 4423.7265 3847.1736 3667.737 3209.3244 5548.9905 4219.6451 6455.5576 6286.1622 4320.9701 4590.3267 2621.5028 8376.4991 2380.3463 9966.624 4256.4052 6675.5636 2279.6686 3561.3185 3544.3156 2218.6123 37924797 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 16941.6838 9523.3748 3304.3767 3851.0798 6543.6695 9043.8126 30690.8354 6034.184 255710.5583 4281.0575 6687.2142 6179.579 7935.7938 7935.7938 11330.105 20418.0338 5923.0362 6409.4439 6087.5499 5323.7523 11729.3435 6096.8057 6237.5425 25801.5469 7740.4992 10833.0612 4921.1408 10010.4159 5454.8944 12737.6071 6560.4173 78187367 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 4321.2417 2327.8705 3768.6114 6819.1976 3073.4689 7004.3253 4445.1762 4434.5946 5032.0145 2192.4889 3265.1544 6158.5056 2707.6681 5276.694 1777.0772 2560.4543 4063.9933 2971.4531 6383.4101 334880867 badh Organic Remediation Aromatics Other aromatics Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 6171.4034 6049.4453 390599.7942 2578.783 5786.4516 2365.3513 6553.236 12094.5498 14887.4073 189793.18 7535.3087 6956.2878 10517.1507 3539.9095 3539.9095 3647.9156 12818.3226 6084.2286 6441.9384 6614.8257 5063.9632 3797.5021 3048.4084 6349.2724 4186.0308 16812.9715 7402.5807 8316.0447 3049.2991 6702.2998 5314.8268 5744.3985 11722.9003 356641484 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 32577.615 4994.9524 18670.9486 4600.5741 7477.041 4695.0258 11770.8865 18677.8568 17928.2056 191248.214 6160.627 15704.4963 22947.6747 120369.4739 120369.4739 6369.4025 16570.1112 16380.2347 116012.3771 33751.067 30837.2239 7784.0479 16735.9658 9399.4335 9473.8586 38886.6214 65714.1318 13660.2491 5818.6411 10393.5045 22890.8004 5109.3642 15714.6003 88812717 terc Metal Homeostasis Tellurium Detoxification Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 140190.2809 83480.881 328985.109 26646.8575 11869.3107 19652.8815 65354.1009 15613.6357 75236.9525 34106.7283 22482.7188 718252.9069 21186.967 41863.3842 23276.1966 27366.3892 27366.3892 45654.4672 154487.401 31952.5307 226622.5794 54794.2183 26522.4317 18024.4755 56891.7573 45857.4483 25377.1581 221278.5646 68506.0111 73774.0829 36538.3485 56776.8573 86721.1322 28024.8254 40615.4712 39997654 ppx Phosphorus Polyphosphate degradation NA Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 10168.4033 22999.8897 5196.1095 4600.6283 66431.2889 4949.6834 4691.5368 6427.6793 6427.6793 3438.7271 6280.9056 4615.1991 5626.0056 42677.6371 6440.5398 2792.7735 3136.597 2725.9893 8897.3215 2488.8853 2499.8825 5569.3342 2619.8653 4297.7913 349858580 RgaE Carbon Cycling Carbon degradation Pectin uncultured bacterium CSLG10 superkingdom:Bacteria; 248438.6495 5501.9143 5181.4964 5498.5369 4862.4347 7314.0068 50650.9526 13605.8632 149675.8549 10853.9594 6942.1556 23941.186 5450.3108 5450.3108 5044.2088 15728.1863 9764.9656 11404.1888 9156.4614 5880.0116 4029.3836 4805.8683 11387.793 3833.9318 14387.4929 8174.9874 14429.3399 4877.1184 22025.9768 7838.4288 5613.4497 10786.075 336299218 rgh Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 53506.0914 13814.0401 15215.4323 36554.1826 21185.8647 12151.1122 801068.4052 39283.9244 102619.1682 24408.8018 31096.9267 76686.6932 880887.7043 40391.479 97064.0659 69675.6683 36821.9366 36821.9366 78483.6926 60694.9012 31249.5379 62892.5097 55351.7233 70767.9076 26048.4507 27349.2213 37505.566 25388.8024 97761.737 44249.8637 74269.4208 23766.0537 40371.5725 41780.2295 27741.6797 63139.8382 292677813 SoxB Sulfur Sulfur Oxidation NA Oligobrachia mashikoi endosymbiont E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 18778.5934 10630.6045 17499.6681 43917.449 5134.1363 17138.3293 64460.1851 37844.9154 15703.1638 13066.8706 11102.2165 481436.9233 21921.6305 16911.6627 20238.3579 10210.1538 10210.1538 11147.6948 31754.5383 20636.8537 16126.2775 16744.3092 83699.5562 14961.4467 10392.5887 23718.2308 12863.4228 45405.5785 18081.7892 21763.1929 25370.9302 14575.589 17311.3962 42998.9925 29320.3668 384086659 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 166236.9947 51475.0196 54016.433 27241.8927 49273.2461 25403.6532 99424.0042 16013.0913 65581.3482 128406.6733 99838.2566 539076.6749 41296.6919 38021.3621 91181.1919 64429.9297 64429.9297 177519.419 46035.9782 54989.9623 100833.6512 74081.6111 100149.8094 47833.108 30359.7659 56142.3799 66898.3134 100549.9075 64248.7329 104414.1577 105393.0681 55783.6098 67994.0662 64204.9377 58590.8474 124267615 fccab Sulfur Sulfide Oxidation NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 14185.4211 15488.7516 5090.1807 55092.9916 62559.3452 36577.2425 23120.8733 4068.5218 10002.1209 9115.3965 99465.4534 12989.335 14996.1869 17689.8322 15347.4331 15347.4331 2891.7649 19331.8916 7436.978 7835.4796 8224.9065 4599.4055 3995.1298 28598.279 14508.3167 7946.366 20069.5469 16551.7991 15094.4454 5214.6909 13010.7791 4586.2886 6345.0594 5730.2647 150951316 endochitinase Carbon Cycling Carbon degradation Chitin Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 4780.5537 6038.1769 36480.2186 13297.5942 18824.7545 89113902 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 762031.3264 10546.3446 299766922 glucoamylase Carbon Cycling Carbon degradation Starch uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8948.9205 6431.4289 16935.2553 8122.0391 4636.7963 6927.2135 6330.2062 6974.772 3647.37 161132.5923 7534.3907 6773.2129 4805.0185 3735.1773 3735.1773 5805.6858 14670.1061 8645.7649 13357.5498 11439.5117 15694.4221 6734.2778 6685.0718 12765.8042 4505.3775 20193.8893 12545.546 13223.1427 4444.3558 6690.9029 14120.1915 4797.6093 14070.0182 340774558 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5089.3762 3123.0354 7639.9269 6838.8829 31415.7387 7823.3413 4551.1245 6392.2878 2546.9331 8678.471 4778.37 9118.5888 5549.4456 5449.5825 2547.508 2654.755 3332.861 3348.6597 7553.4541 319798783 ppk Phosphorus Polyphosphate synthesis NA mine drainage metagenome 7951.1763 5651.5693 5189.4099 5280.2711 3720.4573 13416.879 10113.8529 26900.2059 9773.0796 115878.3513 6949.5831 8142.1075 14410.5521 4338.3888 4338.3888 3157.7122 11208.9297 5162.3618 5118.6171 6320.1957 4013.1042 3361.4575 5562.1588 8985.2326 8865.2535 13304.1081 4356.6789 15340.616 4142.8974 6144.028 5071.8237 8314.3636 4686.3083 117648160 tehb Metal Homeostasis Tellurium Detoxification Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 31335.8459 17250.61 6672.3883 5249.4011 7673.356 9213.5264 5446.8698 16000.2367 13151.3522 10288.0365 568451.9606 40850.0906 762066.2159 72211.2873 7708.4515 7708.4515 23417.1809 44900.7456 14770.8969 20457.2478 28111.5383 280585.0812 9405.7169 13039.6187 20024.2137 36023.3339 41087.9706 24504.2853 26672.2597 14038.8953 12985.5422 16330.6496 11016.7926 22371.1667 149357989 linb Organic Remediation Pesticides related compound NA Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 31409.4591 25200.8077 22172.3122 886507.4119 9965.0846 11274.4107 24420.5852 8490.4494 15497.0246 26706.5742 20108.9591 860456.8785 12965.6766 19138.8834 21728.6784 21723.5222 21723.5222 11354.2661 21481.894 14989.4275 80145.3755 48879.7287 12913.2791 15544.1675 16080.155 16195.7564 24690.1967 52017.1562 19916.3084 21170.4676 11177.3747 24079.6431 31434.7612 9721.4479 31219.5712 339488379 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 10042.0924 9670.9387 10450.446 13506.8459 10894.8089 8231.1563 6768.4631 8476.4114 10161.2447 8245.837 160021.41 11560.3372 10130.8032 6414.8031 8282.1287 8282.1287 7496.0612 418401.1259 9289.9771 14392.8378 15881.3687 20634.0724 5538.8869 5669.6029 14299.5746 5629.1455 34974.3374 7173.123 13408.0168 8978.9562 6911.5472 9942.1754 6508.3305 15459.4538 377537727 terc Metal Homeostasis Tellurium Detoxification Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 50834.2245 12922.5468 30734.3465 52641.6182 85532.2091 41478.9932 18452.7431 46288.6023 38869.7398 35616.5121 83916.7825 34595.6617 521313.282 53313.6137 49322.4442 52016.558 144186.9035 144186.9035 23891.8817 44277.8365 54363.5508 36663.8133 61345.5664 37535.1102 17375.1596 26018.3661 66943.6364 22759.5699 94117.8354 145338.6552 70461.9893 26887.6604 28703.0529 118995.481 35436.8968 40330.1633 354565041 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 10425.4541 7430.1141 9335.4222 5938.6021 6893.4261 5082.1891 8583.9952 10352.4367 5937.1651 220097.2399 11171.4706 10599.2331 5636.1194 4135.8012 4135.8012 7286.0714 13875.8423 12335.7581 6584.8867 10215.3607 11804.9821 5107.9919 4708.8353 16309.2593 6181.3532 25311.8002 12536.3995 14547.6663 6636.0787 6701.3151 6002.8778 4963.9636 21416.1993 11344610 nirs Nitrogen Denitrification NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 555635.1772 30178.2941 3254.6141 72925.393 4413.4071 4413.4071 3837.84 7093.1094 195454.8968 4930.9862 3121.5975 17721.043 15394.193 3551.6068 162568569 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 63292.2852 301359.3554 9154.4059 6886.8461 11310.5902 22727.1371 13357.35 6789.8584 25539.3199 17588.1209 30467.1308 18218.9353 17515.4401 17993.0824 20489.1757 13387.7037 13387.7037 13385.4039 31353.8892 19302.6063 90558.4074 25520.8294 49987.5612 34638.1417 22459.7947 22118.3337 11318.626 39959.945 34875.2457 32932.6126 15579.348 19110.028 22685.4606 15579.3399 32490.6473 154687780 urec Nitrogen Ammonification NA Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 29011.7833 40989.4189 23233.0848 24868.9104 11921.7738 19259.2358 20233.4552 11088.7847 51878.4229 24953.0828 13910.0454 542659.3284 29879.611 32481.4033 18160.9499 11059.2354 11059.2354 17721.6813 31430.4272 29141.1176 23698.2058 25829.4226 47870.9267 13975.259 12271.6188 26889.6143 12341.0136 50171.8491 29005.3911 83245.0612 17654.0927 16969.0793 19085.2354 12758.6993 39289.5445 302038986 aoxb Metal Homeostasis Arsenic Detoxification Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 544579.2121 4572.8698 3391.8355 62403.035 7509.149 3652.8513 5886.7906 5038.66 2599.038 2685.0326 3090.2658 6142.9176 2421.0196 3906.2345 3034.5728 2148.045 290465498 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas alcaliphila JAB1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas alcaliphila; 18307.0484 12457.5393 12374.5475 14580.7095 10920.1749 10911.6382 11353.7235 16713.8371 20078.0066 8866.3208 370232.255 19196.9199 13097.0726 8748.1196 5998.6863 5998.6863 13084.2628 17939.023 20032.8492 19909.0354 21730.3878 21190.8422 8163.3641 7902.0783 20046.9838 7398.9358 31423.9455 18913.0449 17611.1985 7846.956 8545.937 11125.865 8490.9687 26537.8186 397890598 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis subsp. aureofaciens 30-84 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 56613.8178 11492.1547 24114.8404 72011.3095 100648.6631 59381.274 15840.0992 29610.5838 30668.8669 43085.7905 60745.8537 44969.783 1127135.9367 60805.2401 50385.5246 61604.9352 32945.8084 32945.8084 29610.8446 52167.2344 28361.0759 25483.2457 55771.2723 46872.9996 20522.9973 35357.9095 140775.3544 30425.1786 85660.3409 66367.6016 80715.2411 60652.3569 34439.7177 54104.7328 18077.8318 44722.8912 206594311 ppk Phosphorus Polyphosphate synthesis NA Ralstonia solanacearum IPO1609 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 442746.3719 22639.4828 320596.6177 234494.2474 128790.6548 49055.7252 194708.4939 261924.5405 213379.7486 258366.8891 148939.4937 181299.4619 2211973.6253 198328.0554 659931.2951 476115.6412 280280.4259 280280.4259 144642.4355 286467.7401 123481.7051 491896.5784 556060.1285 319293.2268 153232.7612 160119.2588 239664.6557 190396.2167 440870.2137 328751.7777 685385.3895 125181.8441 173103.5359 239301.0585 148595.9685 204007.9391 315277484 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 8837.2779 1034937.8391 5867.6407 11222.0663 7026.0731 4649.2795 2404.0219 6729.2579 13376.0425 3647.2976 124148.2234 48816.5961 5553.5191 4379.7437 4379.7437 4414.9285 11601.9844 10953.5046 5110.4529 10705.8859 14952.6603 3900.9546 3744.1316 14512.8457 131800.0896 16811.2687 19590.0388 12439.309 4610.1954 13287.9309 7218.5256 6222.0721 8978.5737 91681986 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 61905.754 20312.1143 52810.4465 11324.0562 4560.0473 42213.1638 31771.5921 20944.1893 270284.0252 55767.2182 42293.9954 5689125.9234 16555.979 23764.5088 76083.8935 24640.2885 24640.2885 29076.0619 55396.9286 53506.9578 113585.6598 98075.9277 50839.5239 31157.274 49904.9151 76799.5 48985.8637 66496.4885 53357.1572 34734.0542 9824.5576 38362.1619 41697.63 90787.1081 39574.9524 389793856 catechol Organic Remediation Aromatics Other aromatics Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 55040.9107 64313.7681 37602.3094 13623.5276 14417.0402 27286.4828 68832.3523 34562.0833 72829.387 35249.1243 37316.4465 465140.5139 37082.6294 78761.8207 54777.5496 42056.6949 42056.6949 27271.0305 52744.5618 40361.6145 50028.5536 55272.7838 25084.3978 59739.9165 33245.9931 39659.2611 25438.5168 68006.4144 48147.7201 122056.9599 143359.7788 42219.4824 33392.3743 25156.9443 36160.3784 119670370 arylest Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7146.3179 13295.0901 6071.3803 4698.6992 2939.7977 4774.8161 6427.5843 3363.9662 134877.3385 8617.2396 9660.6714 5386.5132 7476.9913 7476.9913 8411.5942 10856.6796 15260.0278 7103.9751 7550.4543 7792.2262 3653.7757 7204.0553 21174.9875 5294.9786 18921.5726 10639.9138 8343.3582 5404.5119 6716.9905 3935.7151 3881.4998 149202281 dehh109 Organic Remediation Chlorinated solvents NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 14014.8692 17707.5142 10105.4181 16253.8296 242764.7199 4887.5642 19336.9495 27405.4302 11443.1722 272519.0094 19739.2744 23917.5602 31318.3926 6632.7704 6632.7704 11866.7436 31010.8238 16778.9527 32227.5468 16184.3161 22049.579 10331.0182 9734.8815 71238.5898 11175.6312 51929.3209 35815.939 21938.1807 9537.9808 15478.3872 15651.4519 10176.7464 25277.8378 158336016 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 88675.1179 111155.2279 25128.5765 45870.1653 15404.295 25752.5727 67329.2119 21805.858 32649.1579 32813.7687 15526.1196 462810.8577 30696.5449 27881.3496 52883.4668 21059.9845 21059.9845 16784.2593 36355.7646 28180.6301 32162.8472 26234.5915 43774.1696 13605.0642 19003.8661 28840.0959 16003.726 63614.2291 39054.0157 47624.5556 20288.7418 30596.1317 18965.9369 12433.2555 37413.1095 381397906 ppx Phosphorus Polyphosphate degradation NA Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 95953.848 200612.0436 63897.7615 52643.3922 34981.1633 19446.3643 42611.2524 28549.9777 42574.0795 55761.6316 35333.5252 568076.6494 84931.3728 76554.6368 55256.4215 41457.5477 41457.5477 19223.9524 64748.6282 41371.3687 722503.2594 65002.5141 44570.2688 15586.8408 39723.2737 62622.7828 16247.2258 101872.2069 57768.4702 57521.673 17541.7048 23960.5634 40795.3101 15726.9781 44611.7509 258544989 cysJ Sulfur Reduction NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 283371.0457 28800.6068 231334.703 185888.6308 437306.1394 129723.0863 159102.0013 280322.5625 321126.0464 201493.6504 328129.7661 174983.6703 6154563.4642 246456.4702 436219.5833 519388.5549 203756.0958 203756.0958 166792.5801 280530.7111 178778.1199 346767.7908 352097.9221 363318.5711 88798.9988 175083.9519 255167.6134 170145.3614 403322.8987 176647.5305 289947.1444 150842.6108 173458.5306 194021.589 221633.0161 321434.0765 345882730 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 14630.3097 19018.1371 5784.4348 38567.4563 11571.685 42654.9562 14855.8275 3858.3289 11141.6836 14835.7747 10982.5848 285668.9985 11719.8303 41028.1124 38453.6605 9091.4722 9091.4722 6686.9897 20290.0018 18352.7179 17775.6649 18529.2776 10961.4763 6980.4857 11984.1085 17597.8433 7453.8849 28071.6259 92025.6429 22813.4435 15185.4868 12531.3252 7651.2104 5237.2821 16931.6142 321161797 glucoamylase Carbon Cycling Carbon degradation Starch Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 8599.8764 7544.478 13358.6551 8959.1145 43589.884 12713.34 9817.287 14904.529 11128.5665 216578.2724 9143.852 9382.1401 18146.4925 7220.624 7220.624 5322.8363 22132.0522 9458.6228 4456.6238 8934.2505 8840.1689 15769.4546 16066.6274 9652.3323 8621.8153 32960.7647 8276.3754 21608.2818 12027.151 19128.7521 9701.3218 6987.4528 16232.2733 302189467 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas syringae pv. syringae 642 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6798.1979 5089.1681 5356.4451 4795.8701 5851.464 6524.3994 8212.2463 8098.5696 8931.807 113585.2369 11323.9414 10215.1726 8823.7839 17277.1816 17277.1816 4262.1636 13096.3479 6327.6154 6648.7085 13979.6162 10255.5842 4361.294 4431.9267 9439.2897 4836.2192 36767.4727 6383.1815 15324.7533 3891.3243 5900.194 25219.8605 5598.5624 11913.1831 238707832 ppx Phosphorus Polyphosphate degradation NA Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 5232.4722 4562.3529 2350.9118 5338.6688 9716.4044 9716.4044 4499.8727 4016.3197 2627.2661 5431.4935 6728.2287 4665.8987 22393.4009 4991.6706 255261532 dmdA Sulfur DMSP degradation NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 16842.7903 26354.2216 20611.5924 18893.6459 7175.7934 7163.5462 12727.7403 9770.2665 17158.9879 22068.1562 11985.7096 295425.712 17827.7976 22675.3742 12274.4324 10400.1682 10400.1682 11668.7819 25612.0234 14965.0132 23679.555 33402.4372 19336.2706 11314.3355 10975.4336 23145.5095 8662.472 32590.3409 27882.7906 25588.1424 8916.8883 11704.0493 10957.7041 9405.2768 28066.0825 302694511 axe Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 20898.3491 143364.9543 11289.27 11611.1595 19682.018 5542.6189 6673.196 4914.2633 8789.2425 16554.3451 7833.2615 188202.1751 9364.8012 25087.2383 9938.6745 15671.7301 15671.7301 15796.8779 15844.7711 9918.3322 94859.073 18704.7321 29431.1811 5880.0065 18280.4328 15774.4097 19070.7293 31690.0185 13264.3078 22094.4446 25812.2882 15280.522 10175.9629 15180.9836 28744.3289 374665475 urec Nitrogen Ammonification NA Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 6132.7068 8122.1699 12948.7764 3678.9052 5182.7578 3732.3413 85462.6486 4463.7078 9541.7308 3556.3766 3556.3766 4098.5548 10295.3578 4843.4336 5766.9274 14445.174 2707.0855 4289.2592 5427.4632 14518.6103 14655.6486 22650.8416 4159.3209 5015.8078 4463.4826 4670.9148 11244.0664 117929240 exochitinase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 92313.68695 139844.31395 128039.1777 76980.11975 55535.79315 98601.76575 62269.4487 79198.7924 97630.6182 58784.91225 1710054.48385 80386.00085 121876.11505 144639.319 112627.91645 112627.91645 195411.02485 119845.83355 64834.7924 69713.38285 81824.2706 70782.5822 56634.9879 93004.2089 50557.6268 134932.5657 95527.0388 55450.1952 67404.1621 81492.24 37473.4413 157285634 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 90171.3959 18556.8636 9705.1658 4600.4031 137910.6365 20167.318 36882.0735 13429.758 16642.553 19692.4065 382652.6009 16506.794 25539.9114 22097.9719 25246.19 25246.19 11571.4336 28957.1874 12386.6143 16886.7441 19504.8348 16970.5435 10588.214 18505.0816 29892.385 21352.7466 31583.5587 33040.7185 25825.565 57994.0378 18090.0531 24400.101 12967.4931 19380.6717 315418412 pme Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 46633.3959 88447.0028 469348.5087 20350.9089 46923.625 26333.4837 17739.3628 100111.4969 51017.3363 28029.0632 91836.3775 67753.1063 1669169.3205 42689.9166 78416.7671 90200.289 35658.1549 35658.1549 93713.5592 95918.9262 51803.7746 35000.6841 164030.3158 62362.1084 41542.4537 309126.3804 57024.2734 51933.7614 130924.0632 81484.936 81254.3146 63804.3866 40115.5254 93784.5975 29327.448 151605.1599 402499702 ben_bcla virulence NA NA Rhodovulum sp. PH10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 98526.4773 4930.4208 5299.8339 8552.7019 3614.6148 29354.6138 7046.0232 80851.1489 4829.2241 6132.8294 12868.7444 10042.8481 10042.8481 8809.1058 18357.6668 6354.2151 3941.3472 4406.0591 4093.3833 4550.5433 12379.2366 3646.4763 13910.741 6805.7599 10681.1425 4024.0495 10993.5984 5906.0424 7026.5746 223982792 amyA Carbon Cycling Carbon degradation Starch Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 71363.7335 82304.9066 76646.1409 111277.604 18017.8633 67989.0475 38019.4776 18909.6391 26533.2451 48021.5807 56411.8299 1475283.8245 40931.7796 47958.1672 58273.5085 91180.968 91180.968 24361.0318 105600.9624 39959.1685 64579.2641 135219.4353 120299.6535 51784.4313 45817.7552 87874.0956 61968.7712 80721.0957 156138.1538 72827.9493 63617.8793 78562.8347 104896.8435 45229.1534 58638.6828 289557759 arsc Metal Homeostasis Arsenic Detoxification Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 15417.5188 17194.3207 207739.7189 39188.4555 13265.4679 68802.5577 174792.9492 8619.9998 13790.565 7296.5224 223984.5436 131176.6256 9590.7613 24428.7376 11712.095 11712.095 5514.5674 27053.6205 8459.2082 9097.8545 68652.71 290102.3965 5457.131 20418.1244 20466.6133 175304.4288 59579.2161 8917.8434 26483.0622 193929.7181 19478.674 24199.7477 4900.614 30163.176 88184435 mer Metal Homeostasis Mercury Detoxification Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 537420.5813 35202.8448 197797.1326 168665.97 71076.7797 60657.6655 206933.9432 423971.4502 288751.3561 262925.898 131714.3461 155440.5393 3921210.8434 267966.3514 298266.4317 475078.6008 282356.6138 282356.6138 162691.7759 245339.8883 122994.5557 281060.8332 267803.7194 284090.5119 152317.4569 244330.8352 217976.6497 166829.7648 557467.0668 412333.982 457407.9184 187677.1868 165198.025 183993.7459 110061.3192 265957.6729 158333063 arsc Metal Homeostasis Arsenic Detoxification Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 286280.5618 32287.7951 70434.1842 54612.0314 16333.8194 39627.1056 40315.186 38171.18 73891.5229 171821.5259 45255.2155 3390663.9103 57166.3538 91745.0986 180241.292 69899.2811 69899.2811 37412.9781 91118.9196 46907.2684 123919.0865 83979.7412 67924.2614 52838.5819 75089.4828 62232.6155 44474.2372 125683.4629 75796.6613 92668.6126 24862.8356 83957.942 347835.4641 42423.8217 191914.0008 334895446 atzd Organic Remediation Herbicides related compound NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 6126.4469 4423.2599 5644.5044 3633.8526 5307.5084 4021.3745 4021.3745 4142.1554 8384.9171 4520.217 5151.3806 2199.4234 2537.3937 14128.758 7105.8419 2573.8725 3747.8971 4268.9374 3114.6669 5710.4901 94471323 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18081.7995 8772.7445 38776.7289 9032.8178 6980.12 30352.2742 9979.7844 13870.131 18098.4995 14319.3929 275487.4106 30505.5755 11561.5135 16237.4561 9995.5834 9995.5834 7596.3509 38987.849 9305.0892 219521.259 26562.3836 17202.1082 11711.8701 9812.0837 12420.8318 28895.4421 23247.022 17353.7357 16819.5395 8481.2536 7823.1095 44318.1246 9099.2314 9080.2682 90199690 terc Metal Homeostasis Tellurium Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8649.1005 9201.8638 11524.4668 6393.063 15565.0521 3523.1343 6612.3199 9372.2093 3984.6132 121921.2368 10103.541 8441.0806 6188.6762 4317.8464 4317.8464 135772.9632 12308.2455 8220.4576 6717.1562 14394.1526 13827.5515 7001.3347 6851.4986 11563.604 27000.9115 15628.2673 10073.4953 15581.0294 4704.4492 7735.6216 72360.2011 2794.3693 6205.3202 213923822 ppx Phosphorus Polyphosphate degradation NA Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6445.7237 5974.7175 3467.8133 3063.3043 3727.8033 4828.5743 2801.0851 129965.0964 5028.0963 6067.2446 3561.9307 3561.9307 3126.4281 11275.4451 5366.9764 6082.6003 10715.6036 6668.4642 4355.5531 4330.6641 8838.3888 3855.7653 12853.4797 6309.0492 8269.0386 4434.9079 4580.8069 8137.7033 3992.6372 12623.3681 46307888 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4519.2456 2317.8253 3310.5608 2096.3052 3762.1286 51782.8132 3448.4271 7238.4977 7238.4977 2670.1719 7361.2383 19160.99 4755.2715 26922.5795 2577.087 2655.1751 9449.6076 3311.3889 4640.5873 4299.3206 4766.04 351592655 ppx Phosphorus Polyphosphate degradation NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 11678.9891 13821.7381 3870.0574 6941.1513 1919.5438 6699.7162 2238.8945 20502.3459 7008.976 70403.1539 103213.2202 9608.324 31791.7004 13638.6282 5408.8358 5408.8358 3231.0047 8008.2317 4391.7362 392626.1726 6573.0943 3656.8005 3990.0211 7986.9756 4212.0535 19277.3721 3753.1996 140741.8117 2588.0289 5313.0957 6254.6662 3251.9965 37419.4204 357975213 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 33673.5133 25870.8149 40869.6831 42024.3471 9900.8499 21426.6745 33179.8762 52916.8597 20252.5452 34111.8432 16873.0353 478539.7982 22960.2832 26000.5216 18418.6504 16292.7167 16292.7167 25089.4275 42555.9516 25151.2387 44894.9942 45116.0574 25735.7343 11568.9969 73571.9745 31329.6837 17761.4689 48365.2263 24343.3298 33825.389 14528.4547 15887.6445 22626.3381 17465.6807 52606.8554 343967318 ppx Phosphorus Polyphosphate degradation NA Neisseria weaveri ATCC 51223 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria weaveri; 11323.7778 7258.304 9103.9926 8304.3027 13131.4503 14166.3532 3919.705 8519.5055 11948.7347 6088.0714 163034.3353 10282.6411 8616.1858 9577.3709 5360.5138 5360.5138 4876.0686 17557.4733 10164.0637 10133.9159 10286.779 9920.1451 6208.9223 5642.5009 10259.4972 8730.8359 7845.1925 4114.3474 12252.1099 6131.3113 6983.6068 7825.7674 15945.1757 16167.8899 170690091 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 32395.2342 309290.1445 25485.233 31474.3955 13101.1422 24326.2081 91135.9993 16898.5771 22114.9193 30744.2548 36736.1678 298577.6865 78315.7252 18983.1429 111863.0118 17212.0552 17212.0552 16330.3865 49718.7639 25675.3248 57816.3795 30513.0146 55514.244 42850.8489 19041.7434 23176.94 14093.8676 57610.8151 31516.0679 36069.3173 18985.0174 21632.5247 23726.9547 21828.7 217929.4413 6014584 dsrB Sulfur sulfite reduction NA Solar Lake Mat Clone22 superkingdom:Bacteria; 37691.9277 10651.9944 5871.5794 4869.6194 6010.198 44941.4127 8648.5526 13966.5561 13966.5561 8509.0562 4041.4746 5041.071 5296.0272 5059.3069 9187.1368 2884.1268 22764.9014 17991.3524 3317.3865 10580.1581 9556.3356 3001.8424 170941809 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 300381.3421 264552.1133 36604.9855 37473.457 4867.9768 9127.5891 54773.7155 16162.6652 57386.5001 25535.5285 47121.1376 1016148.659 29181.0451 245931.0517 42394.242 23868.4571 23868.4571 163810.1176 93384.9635 11987.7175 8018.7028 77405.8715 17155.0936 8508.2658 42795.7712 29047.899 59091.6881 332930.8216 20292.8391 32774.5747 30580.5902 17059.2107 51494.5089 14250.1147 12317.9969 126316318 sdsa Organic Remediation Others NA Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 86133.5442 14801.5876 48515.4153 47884.9458 26325.9816 13123.6354 35322.0241 49463.2384 52243.4734 51450.0222 55742.2793 46926.5021 1186920.1443 47457.4818 667932.678 64749.5946 86981.9949 86981.9949 60936.5703 75589.4415 72131.2392 38043.8125 66556.8845 36031.66 36661.0264 42442.9585 48670.3285 142042.6517 95041.8295 53015.0489 53959.8625 27562.0688 44756.1062 137057.3326 47145.3799 437752.6331 184192910 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7103.2665 8684.4855 19390.2171 4537.1381 3161.2875 5417.539 3184.4494 17833.9056 3437.6907 6150.3787 4991.9571 4991.9571 8929.637 23077.864 3907.5875 9621.4033 11573.873 6838.9326 7425.6755 4795.3558 8949.4391 40061.9718 8129.7944 11643.292 7124.4796 6130.3286 154509357 amyA Carbon Cycling Carbon degradation Starch Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 29368.667 61968.6679 14430.0331 50849.1693 28774.7101 7097.4603 68807.971 12384.5048 17202.6873 37634.6406 20449.3415 13838.4183 499877.6938 27582.6805 50230.8929 26436.9318 13722.5937 13722.5937 17563.1799 64573.6582 35004.8229 18597.3852 31744.9817 39815.9379 22078.7434 13086.3962 32746.7079 20687.6111 71310.0512 12022.0955 33397.9824 15308.4009 34584.2036 20082.3181 14925.0951 57267.9953 296393547 amyA Carbon Cycling Carbon degradation Starch Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 4783.4698 23889.2875 2441.5669 5174.9298 4145.1941 10040.4518 3678.0749 4438.0625 4067.4348 4067.4348 7268.4141 10784.4461 2736.1144 5820.7318 2046.3521 8630.4922 4046.5428 10893.1518 1965.6835 2555.4692 9161.2335 335437738 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 40344.3506 7647.6983 8447.0667 26559.4812 117750.2586 19816.0483 37665.763 34671.7013 55374.7311 36933.2318 28858.7035 438993.8339 40814.8199 54109.7395 146650.58 22566.9335 22566.9335 80657.0657 49222.0566 53025.8111 52917.6168 32604.7959 10601.5506 16659.9084 38162.5404 58201.3592 18203.9324 61992.5257 35129.3132 49622.048 30500.4948 80948.8186 26909.1569 46804.6975 23182.1218 88909719 exaa(moxf) Organic Remediation Chlorinated solvents NA uncultured Methylocystis sp. GSC357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 19255.6219 8709.6337 9367.6812 4896.8137 5647.1829 5534.0725 6681.2402 66014.2422 7035.4229 5214.0327 4067.7815 4067.7815 6095.7813 16854.9561 10634.5177 5759.1769 14865.901 4646.3131 4140.6406 14645.5901 5700.0945 15165.5938 12034.1103 9175.0318 3911.4917 4754.9715 6535.1318 5309.4903 27550.7295 147850231 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9879.6014 302962.8528 4995.7861 34762.3138 3873.7973 5903.7283 4784.9356 6252.5053 6676.3894 12784.3873 134673.7194 8089.9009 28160.342 7287.709 6353.0273 6353.0273 3130.3213 19017.5374 7447.9027 8241.9726 12239.6215 20866.9573 4352.096 5270.4244 609642.6948 4809.1597 15533.9223 8510.5048 9323.1852 7138.1747 9290.7555 8616.8364 10027.7284 5874.4395 113867644 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5944.5003 4898.8714 16038.3909 14270.6399 4761.5682 8344.0488 4653.9134 2685.0466 13902.861 6000.4498 6310.5717 93980.417 12498.5596 6597.5422 7235.9082 5776.0458 5776.0458 3783.5504 11709.1064 9425.5883 8856.5754 12119.3953 9554.6461 4252.5431 4408.5965 11099.6586 3524.6949 20738.3662 8350.6927 11244.0581 5720.4032 6407.673 5387.8618 4600.4035 8388.1001 37527678 arylest Organic Remediation Aromatics Other aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 78194.0285 4765.2568 359739597 vgb Virulence Antibiotic resistance Degradation Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 192692.3013 10146.9375 5836.4798 65464.8115 2275.5088 4947.1545 4325.981 3464.9343 287481.8645 4651.5758 4598.2 78070.9751 4107.1726 4107.1726 10070.1265 9807.1562 67686.4437 6530.8876 8446.8566 4898.2364 18554.987 4626.0645 5874.9779 2755.6663 4645.7282 3943.019 4343.9373 329851654 alginase Carbon Cycling Carbon degradation Alginate Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 7219.7664 4412.9265 14947.1306 13051.3174 2056.3673 12624.4947 10705.7799 43909.2254 812348.2605 11085.8812 13057.3026 30279.0133 11726.2654 11726.2654 4075.7293 14009.9926 7811.6967 6263.4089 6023.1676 3819.7242 8942.4705 12148.3345 5128.0851 10983.1217 10577.195 11603.6336 3299.5048 8602.9765 5287.511 3077.925 7332.4555 167031918 cysJ Sulfur Reduction NA Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 7917.4356 8637.5414 4889.4072 3002.5616 2596.896 2175.2905 4903.7959 6381.7147 4567.1392 78296.9984 5536.9916 5620.3778 11312.5934 2984.2222 2984.2222 2687.0379 10011.5692 10002.4025 6391.5308 4590.4975 8496.039 57647.3668 4986.7352 7652.0181 3815.4499 13197.5226 5873.4023 10723.5894 3926.1979 4590.5646 3913.6262 3282.6661 6008.9753 45269099 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus pyridinivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 16621.6778 15718.5407 22705.0034 6719.7586 84755.7509 15985.6664 20672.1677 58752.0018 213540.6216 8216.2186 309283.328 37547.3436 18640.039 18640.039 12636.5876 25281.7241 16583.7019 13042.8491 55705.8442 19112.3978 10340.064 12426.1138 11723.227 17095.9705 87944.0441 36303.1684 33213.9963 20548.2883 54841.9721 28660.1479 26966.1123 12911.2394 98978094 arsc Metal Homeostasis Arsenic Detoxification Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 20662.1262 12926.5748 3762.0309 10970.6449 84298.4792 10085.9542 21991.4716 21811.4594 11694.5444 14664.8659 49411.322 614536.2808 46010.0426 21678.2381 49488.0509 31705.2086 31705.2086 17182.9544 31787.1253 18340.4181 23539.172 48938.8664 20613.7037 74796.5529 111142.0322 13361.409 85669.172 53005.3321 23787.0356 32160.395 21907.0746 81022.4192 32471.1441 18414.5151 11276.371 227548817 ppx Phosphorus Polyphosphate degradation NA Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 6434.2708 6478.024 4591.4616 4342.3489 4228.2858 9082.733 8958.1086 5634.5793 61529.5005 4492.271 5372.0308 3058.2043 3645.8461 4358.9957 44219.0483 345000618 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 12155.5129 6574.0545 4580.4425 11738.0089 7108.704 5977.9245 5546.6981 6606.6729 16135.411 7337.8142 119228.5074 9547.6822 7349.3377 3326.2985 3326.2985 5386.8888 17777.0464 11493.8374 9022.4027 10960.704 7425.4787 7823.7974 6695.1522 17694.9574 4970.021 25253.9376 10807.0178 13440.681 4831.0837 7407.5868 17077.3295 4805.0883 11623.2658 299526456 PRK Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 34952.9924 29879.9236 29042.8487 23917.7583 4961.4826 22421.4073 50304.3449 18163.0106 19634.257 29175.6113 19401.7925 1720117.6012 30763.8439 29658.607 29513.2051 31193.6776 31193.6776 31408.0292 48893.6756 25075.305 21987.9115 37390.621 37269.9077 16485.8239 15782.4763 28810.2093 42060.5989 99226.0901 90967.1429 30849.1212 18425.9777 20256.5682 79197.2325 15180.6887 35986.7625 378725976 glx Carbon Cycling Carbon degradation Lignin Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 3968.3603 2052.6886 3084.3397 6344.9823 8998.847 4679.0508 6780.2525 4224.0854 5139.3672 1769.9159 3096.4212 5625.0703 399908881 nfsa_2 Organic Remediation Aromatics Nitoaromatics Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6816.5125 2435.1372 4985.0837 3982.0173 2461.3267 2461.3267 7895.1142 4062.7806 1646.8319 14242.3274 8690.7464 7160891 nirs Nitrogen Denitrification NA uncultured bacterium wC1 superkingdom:Bacteria; 4425.0855 51404.0328 119119.9786 6053.1302 2193.2373 3652.0152 2211.5421 4115.9456 5554.202 25413.3331 87310.7658 6330.744 5687.2413 5563.0515 4867.9375 4867.9375 151539.9674 9888.7834 7964.0867 47129.1194 13820.271 3111.1519 6937.8099 15540.5052 8490.931 108338.4586 36398.9511 12479.847 16403.9627 5316.6005 7088.4246 13252.5116 6499.0123 62129081 cysI Sulfur Other NA Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 8366.3611 160312.241 9588.1964 5822.9137 32726.60545 8106.453 6507.7325 12043.7383 289287.0367 12411.5723 7227.7617 186657.8951 7140.8868 7140.8868 6105.3493 455816.7751 12803.9687 460702.5447 19134.9892 4691.6833 6619.4179 12952.7022 8168.698 11684.025 36867.0511 11135.2806 25337.0413 7432.8317 20918.2487 30365.326 23344.6996 8823.2004 307633084 Sir Sulfur sulfite reduction NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 45196.1675 19512.4598 5536.1614 11810.6638 22881.1634 68625.864 8858.3027 4822.8074 10941.4475 143779.266 13206.8058 34207.9404 21436.9552 108105.7965 108105.7965 6777.2013 13205.6041 8244.9155 86573.9462 50863.3413 8866.2864 5922.8186 14623.7196 86618.2632 4086.3398 19491.8676 10468.86 15636.2043 3911.6153 7480.25 21145.5304 5030.1683 13040.6795 388784603 limeh Carbon Cycling Carbon degradation Terpenes Streptomyces sp. SCSIO 02999 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5790.065 6196.1469 7991.8093 3064.5611 3501.4247 4549.4068 2989.4111 94739.81 8458.0044 4448.6766 7699.8356 4837.0507 4837.0507 3823.3859 30081.9299 7590.0127 6314.0532 6205.6783 2862.4137 8620.1895 9698.7227 3097.4247 12813.1546 7129.0896 18683.3822 2858.8578 6927.3783 4870.1431 4350.7544 9296.3241 326382380 arsc Metal Homeostasis Arsenic Detoxification Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 126637.7562 95915.5066 28763.93 32003.5833 45132.9176 10963.2959 19616.9146 6889.3192 14783.2976 29848.2313 11730.0584 669079.2928 16107.2887 38242.5553 41930.9388 28911.7527 28911.7527 12479.6206 26576.1167 34024.2154 16175.1372 15689.9613 23921.7006 9573.8617 13852.3844 43840.2501 12500.8781 24667.6894 34900.0028 34911.5814 15107.429 16232.0439 15097.1157 20352.8703 18251.9549 383447978 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Rothia aeria F0474 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia aeria; 4309.5513 2065.1014 3716.4538 2929.5835 6233.1803 4420.2544 8140.5821 1720.0592 3001.7874 6617.9998 333476795 arsc Metal Homeostasis Arsenic Detoxification Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 267651.4168 14966.5517 33680.0739 126210.7607 12781.7598 16988.3103 11062.3646 4928.7495 15093.8442 22238.5858 9689.9495 519872.5776 87653.8632 23471.8968 19808.9379 23147.8443 23147.8443 16288.7279 33994.7864 22266.0842 22824.8972 16526.1622 341733.8886 164428.8755 18639.1861 34814.73 11748.4369 956875.1362 81915.8032 24736.2774 12426.6856 17363.3848 29179.6757 10706.655 49615.215 226093715 terc Metal Homeostasis Tellurium Detoxification Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 10097.2494 7014.695 7575.9442 9035.1062 7522.7975 4218.5217 4650.0847 9254.0777 10597.1807 5221.7356 206982.685 12810.4551 8893.6026 5503.7056 5636.0227 5636.0227 5245.4494 17644.3421 9939.7704 11975.4896 12317.6496 11830.016 4294.8357 5770.7223 13579.6639 7351.2453 18918.0891 5762.1352 13761.5852 4794.1755 7504.689 8343.5849 5207.0313 16470.7898 379990417 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 12327.1578 9405.4952 13550.0252 2986.4981 11113.298 6822.1404 17164.9876 10270.1037 3770.4445 9867.0446 2934.5916 2934.5916 2705.1954 9175.7496 6656.9167 4618.83 6622.4483 3848.3859 2439.949 51236.3699 8985.6825 2221.4954 75566.0274 4494.3885 7595.8539 2327.0032 2825.8241 16355.8213 2628.6974 90420090 alkk Organic Remediation Others NA Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 4464.4724 21223.6221 71509.8098 5888.8877 3782.8446 4264.4135 3418.1929 3418.1929 6208.8114 9269.9889 9181.942 2766.3471 6607.5566 4676.6819 9789.8281 12660.1612 17250.2277 3475.9645 6443.5957 2566.554 153010226 FBPase Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 17243.2018 25923.7552 21266.257 428051.9523 97300.5632 170290.4899 26950.6033 8172.6739 23905.8023 21081.3776 35102.4333 578279.1361 28659.3565 25168.591 31699.7574 27361.9266 27361.9266 114386.824 42446.8293 30508.1454 98736.0838 68261.3839 30898.3685 14806.8942 18581.8914 31088.7086 20700.6933 126689.3566 33648.8482 55393.8353 17015.9604 21901.1914 48957.1661 17128.9861 92667.1255 85671757 ppx Phosphorus Polyphosphate degradation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 9704.0231 11201.1554 15843.2048 3071.0699 80913.6527 5120.2716 26179.6719 4207.5046 7637.9118 4312.508 3455.1 7357.401 10056.5638 4910.581 5775.536 4652.2637 111036265 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 60153.7673 2632639.3859 18160.4179 1735171.3071 41564.1106 14713.8268 30497.287 3162.5394 5503.9758 57284.4838 24291.0376 429593.9139 15625.1631 8642.0309 17643.2234 35594.6985 35594.6985 270453.6462 326876.7909 25478.5659 73771.5015 15651.4286 14761.3115 36268.0823 46709.1342 26248.4427 85430.0257 130115.3874 97610.4158 93825.2431 68603.3253 134075.1315 78514.125 11605.8099 7199.671 145569487 narg Nitrogen Denitrification NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 26780.7064 14446.41 507837.5157 41092.8271 479713.947 8535.3446 19965.7636 141774.8618 20278.1381 23313.874 39019.6702 19146.0415 502522.0402 157379.9641 34611.7473 258624.6582 18018.2376 18018.2376 23196.4252 200052.2361 22412.657 31299.4331 308152.3305 25585.282 26489.6401 26720.0053 96438.8908 128686.6774 67045.7268 27195.5091 56213.6859 30827.9575 69221.4791 110777.3718 44194.7865 41354.8711 219868935 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 6975.1737 101106.7735 7900.2 2926.2016 7705.1235 3550.221 6694.556 8303.5451 4266.6007 86769.0303 4735.4974 6377.1041 4092.5752 4092.5752 4080.1626 14518.123 5929.7 6973.1965 12021.6214 19987.0383 9517.4904 6172.5753 8607.8532 3978.0772 14212.1189 5099.389 11844.3188 4250.3019 6139.127 6627.3569 5863.6597 8082.9394 306984208 FBPase Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4293.5937 37645.337 3361.9838 13885.6804 3490.0677 26626.4353 3011.4203 109932.0697 5871.8347 5092.494 6052.2072 5583.3166 5583.3166 11337.0183 13124.7697 8600.7781 2123.4379 3410.1703 14996.2855 5343.9399 14377.7649 6831.7089 10056.2113 2722.9239 4110.182 8198.015 2338.4511 5627.6993 255259489 rubisco Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 12402.4248 18042.9412 13132.9048 11268.369 4100.9613 11893.5238 4997.0252 11914.6174 14924.3473 4859.3253 179754.18 18999.7156 10606.976 5322.729 5322.729 7869.8108 15089.4512 9788.9616 10808.8156 12355.33 21969.0756 26719.9248 5154.0953 16588.2868 4781.1866 22577.7561 9607.9377 13316.6482 5309.4022 8716.7727 8893.5017 5275.6059 113437.3467 374608813 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 10938.8649 15277.3596 7476.1764 35173.0012 21883.1599 4410.7549 9288.8046 12752.7146 11910.7596 12356.8436 13948.0154 208867.8116 16105.6421 24625.3477 18902.6593 16201.2682 16201.2682 9331.5303 25938.4236 8768.2051 5244.9208 38658.4631 6419.7877 4938.7406 18284.5532 20327.8314 7018.1625 25140.0653 29578.2232 16766.4598 5676.0881 12305.1978 17803.7814 6584.9583 8090.7438 319907031 vgb Virulence Antibiotic resistance Degradation mine drainage metagenome 15198.9912 9585.8909 7813.8702 8488.2321 6929.1738 5698.6114 2120.1515 10670.5901 9445.9127 9785.4945 117038.1328 63294.4635 8316.3869 8464.0603 5099.1414 5099.1414 6235.9881 10827.3047 11755.7894 12416.9508 29501.8466 32505.8659 4508.647 20914.5328 9951.591 14353.7991 16686.1267 7230.4225 17482.2633 3933.9416 6574.5359 6728.4327 4370.6828 11588.128 297164831 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 11409.561 6872.9521 19560.4122 12691.863 29415.8985 12588.1831 17668.0586 3332.6652 11657.1734 19560.3664 7705.3002 1054739.6537 12593.871 37037.1086 42498.1107 27580.9801 27580.9801 13089.6947 97169.8392 17066.5267 13701.2726 10252.2843 21501.378 9919.052 20284.1243 30085.1769 5208.4583 31374.0598 6225.3299 81156.7433 8517.7234 13451.5802 29404.7407 4909.0401 20128.4537 73541847 ppx Phosphorus Polyphosphate degradation NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 98132.7071 15692.1502 29542.5547 17040.6738 43316.4005 24729.3472 19938.403 17469.1328 125233.0521 26633.3842 13898.8614 409104.9731 44460.2416 47681.198 25769.2214 12609.3692 12609.3692 16519.027 34375.8861 20516.4123 27911.7125 63702.324 41736.1456 22577.5297 28789.5092 31412.8608 14011.775 53276.9693 19349.2874 32690.6052 12828.3513 16196.2743 26965.6519 12797.2021 33964.537 171741521 ppk Phosphorus Polyphosphate synthesis NA Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 5405.2193 5106.0364 2399.8889 63083.1932 6833.7666 470745.8296 5859.602 2907.5081 5167.5907 1667.4664 3370.1569 194291937 phn Organic Remediation Herbicides related compound NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 7527.893 4142.4691 17639.1922 5225.6944 2612.6892 3365.5665 10090.0165 3116.8042 80144.5193 7689.605 6046.6931 4758.1543 3965.1993 3965.1993 3362.5973 10789.8156 3942.5777 5206.3711 3029.2694 3602.9582 11963.2507 2551.2334 15382.0378 7817.792 6360.7237 9195.6956 4346.9029 4800.9385 4733.1323 86607525 urec Nitrogen Ammonification NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 91557.8157 73297.6827 26243.3144 14232.0557 115214.8392 16079.4434 305047.1639 79685.2198 35841.7019 54732.7901 29012.8987 66886.225 531105.7437 48284.4095 25360.9207 66423.1842 64532.1144 64532.1144 32367.7314 60128.0462 29824.2359 24327.696 65775.6988 22265.968 18396.8006 27630.2183 28831.4631 34462.8068 58240.9171 50228.1281 55022.3176 31360.6994 26797.9705 47844.2254 21005.4641 29814.9648 158523522 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 41379.1489 99365.4797 24478.4641 21234.8351 15914.2672 15890.8404 8880.972 16130.498 14910.8931 36191.0317 14467.4321 157376.4385 15302.6504 20886.1394 28233.9447 28378.912 28378.912 13620.397 24190.0464 17754.9002 20596.12 15893.5866 16582.3831 5458.1869 23473.5616 22774.6933 22737.2836 29410.7539 24467.0476 18980.0266 7271.2303 12411.9739 12507.9566 8189.8442 12597.1542 91795559 vana Carbon Cycling Carbon degradation Vanillin/Lignin Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 47930.0194 18491.8239 290504.3105 95023.8927 92745.3886 21858.5952 94659.8624 65282.0578 42749.7955 296920.0764 418298.7308 85996.3746 1591745.7658 184840.3675 97152.7781 196073.2174 87730.6813 87730.6813 28052.7494 158811.132 68652.9271 41069.2548 74412.5573 26343.5958 38932.8287 58139.3779 90518.7046 54947.3751 97119.684 76260.4195 63952.0332 30137.4349 81655.0626 82664.6543 26046.8081 93601.0173 266619825 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 14959.5045 5599.6686 12248.8929 8587.778 4890.014 5741.884 10697.9243 12119.0117 4580.5041 212352.9652 8703.8133 17851.637 9153.2924 5225.6349 5225.6349 8858.4926 14481.8222 11176.7718 11969.9062 17109.4 16768.1904 61033.8519 4482.932 16039.4022 5666.5909 23708.8536 12839.2435 16075.3932 6138.1146 9227.6528 11838.9088 5251.6049 15583.2326 371445215 mcra Carbon Cycling Methane Methanogenesis uncultured Methanosaeta sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 92946.2049 6891.1408 9757.5225 11337.1438 29648.6297 3379.8987 3840.2894 19586.0475 24294.6195 171741.0483 5650.3066 25756.0556 23535.8405 10682.4301 10682.4301 3258.7485 18222.9144 5605.4745 63963.2638 15803.2545 20684.0997 88248.5441 10583.6686 15966.4148 6077.5055 40773.4381 12147.0345 15339.2543 7846.122 52636.7352 7502.8316 7234.1492 24980.0857 145575765 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 144933.5516 16595.5227 55135.1148 27499.3744 25337.4512 659208.8598 23760.7034 15526.2243 17005.2681 17507.3814 15473.794 13054.8025 500692.1859 16427.4524 24091.7966 28264.1381 21187.8093 21187.8093 16825.2557 20689.1748 18525.9478 17800.2058 25501.504 23380.8375 8203.6566 26227.3417 31542.2217 15439.0709 136479.1374 44434.9283 42739.6924 10497.9219 12151.7248 25131.6114 31844.2067 31999.613 113867775 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 48636.1513 5312.8885 5334.6304 3691.5021 3330.6323 5708.7911 4434.9512 4097.2512 4486.5049 12749.1945 5959.878 5803.2345 2663.6204 3149.786 8266.5058 3396.4985 11366.8541 8955.9545 7846.2222 1921.4519 3663.7139 5727.5923 5556.8999 46318036 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 268040.5596 22036.311 103635.8556 125715.5246 109077.5951 24177.2865 65180.2487 183385.9959 243159.1533 110269.7068 144241.0818 140270.9994 4211502.8551 137506.6895 163085.1952 135318.2383 108034.1121 108034.1121 100353.0068 207703.4351 80169.742 366251.0773 143220.1591 129830.7741 73996.7034 93395.9907 118201.2627 127900.0408 265567.0437 96420.3296 176084.7236 98746.5045 115387.7174 143864.6397 87836.5439 231038.4423 74038370 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 385160.4987 412748.2056 249899.818 1791317.5556 612511.2383 194180.9493 344383.2548 316960.957 212407.3833 475677.2158 612783.2089 325164.6629 9104397.2739 294723.0201 891387.6078 602257.0633 618126.0079 618126.0079 333409.6916 363486.7929 490068.3965 1084008.7449 705821.8583 1863220.6059 376456.9858 322748.3645 460678.9108 327635.9789 784964.293 609945.232 525074.5034 333821.9164 352189.0168 342154.6841 259898.1378 1675286.8994 145225492 scnabc Organic Remediation Others NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 16242.4265 7218.78355 21785.47205 16640.2864 4421.5862 64566.3631 17384.51135 22016.7442 19193.49525 19476.476 8469.40755 235082.76865 103716.1547 12114.42115 18201.83245 12559.72315 12559.72315 6085.5599 13425.5555 8921.769 9928.43225 42426.7122 12772.90975 5645.49775 9652.73625 18328.29795 11298.677 13215.01405 7601.38915 12500.07915 20329.8762 12225.209 45113.40705 307594656 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 54465.86 19695.7082 10140.9204 6008.9309 4485.6676 22762.847 76989.0496 37909.8932 35614.5665 22046.2282 49704.2573 5154.3396 17134.8886 70171.517 32233.7484 29436.0637 29436.0637 49993.1977 33193.653 15920.9742 25799.6748 49391.5977 717521.4947 37997.6736 19816.3788 12526.4123 18113.5146 68494.8533 25893.0852 150706.8394 12001.0146 32616.5078 21109.8616 7586.547 36841.3489 86557797 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 23335.8388 39720.204 20548.3382 22171.9575 47297.8545 9130.8403 16171.2171 18388.1279 16149.0978 23727.8387 28459.6609 14368.0473 639863.2836 23970.9377 27177.3811 35345.1601 22265.982 22265.982 24339.9151 44725.25 29313.3796 32825.7381 27589.9293 36897.4754 14091.7686 12384.5629 37747.1749 17345.7226 44988.1758 23007.3408 35107.1029 10362.4033 19601.066 24723.9847 15113.3514 32559.5968 307152744 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 50403.0957 55730.5179 24492.1842 14252.5789 27124.6689 6120.0661 17094.4695 16676.5062 27365.202 32014.0327 61771.0044 16602.5506 728378.388 26007.181 31577.3155 33672.7858 15691.5361 15691.5361 17602.9303 70694.3925 32993.5533 23712.838 44365.3641 36002.7023 26180.4627 41434.5327 37016.2531 30571.1433 71854.8614 22206.0929 163891.276 15717.1046 29426.3739 60013.5658 16960.3395 56387.3874 27367303 amyA Carbon Cycling Carbon degradation Starch Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 10061.247 10830.7424 2343.1877 5707.6734 5281.8635 3612.8145 10134.6262 12113.7478 4737.9064 8696.353 5272.1703 5848.3794 5848.3794 3179.2098 30101.9134 5635.7865 5253.9071 5690.6388 33100.89 18307.2837 14575.311 12500.8285 36497.2691 11387.251 13158.7729 16088.2586 2980.0685 10185.6908 167588466 vgb Virulence Antibiotic resistance Degradation Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 7517.795 16883.9799 86037.7082 2612.9576 2936.7701 3342.9225 8270.93 9751.4855 9751.4855 4023.2807 14811.6283 4460.2209 10163.3293 9859.9756 3849.1666 4769.5024 3964.4175 5585.4024 2226.214 3311.7078 8909.7677 33953.391 51246883 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 10039.17 112307.2973 47320.4484 4297.6866 88882.0683 2111.2019 4361.2633 31098.7945 15243.3828 237755.8809 27150.7842 3330.6479 8281.6572 8281.6572 23018.6216 236933.3711 45290.7291 45129.348 43234.0742 346641.1364 22708.467 38173.3868 7615.3926 19623.93 63036.0074 92835.2052 19992.4727 41730.2381 44547.9494 21846.0645 71289.7443 105380.7968 147850230 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 22194.5143 668359.6136 7639.1629 48167.9336 6925.5281 10427.775 14789.4459 5332.1221 11377.7154 9003.69 6204.2181 957721.1246 12352.4538 16585.5561 8667.6986 5994.3792 5994.3792 8904.228 31003.5512 15512.3656 11043.1962 31469.0164 21557.4456 8963.616 6422.913 17183.4726 8662.109 28699.4381 19138.5888 17243.3971 16047.0409 10837.5041 58512.9129 7672.2617 14021.6235 315606050 ppx Phosphorus Polyphosphate degradation NA Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 5933.0795 12962.8187 10006.5552 6107.6834 5276.478 3639.2046 3081.3348 7025.7722 7776.8356 4020.8166 124651.1712 8809.169 6536.7048 13888.7233 13888.7233 6219.8673 17477.5481 9904.1715 11120.2392 15134.1707 7204.3036 7507.996 5619.219 10334.827 5408.2982 7366.1669 4229.8023 14624.6582 4690.2918 6472.6449 8449.7438 4856.708 12484.7035 163261089 Sir Sulfur sulfite reduction NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 30694.9135 51378.0949 10120.3103 10171.333 403595.7848 16840.74 13449.9375 46703.0864 106894.0524 50244.2848 23563.9164 53481.8836 461821.6995 11980.4205 16400.7358 25491.1806 27874.651 27874.651 13390.6255 39167.7626 17964.561 42299.9212 93927.0029 34601.241 40149.4566 70909.2653 26662.122 27016.365 280843.3165 29146.3084 55394.6949 26116.2634 21015.0923 27186.0969 33583.0197 37295.3304 81176593 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7044.5296 454631.9026 6445.6158 8326.9859 17306.5837 6687.7939 496748.145 6494.7705 15878.9629 3534.6034 279173.4958 8336.8096 4546.6655 4930.3085 4930.3085 6643.5159 15617.6368 8389.3274 8814.6391 45366.6517 13087.3964 6967.4055 8022.7368 7460.6427 5194.9599 14787.027 7423.5223 9727.174 7266.1486 7983.9066 7392.4677 5255.2408 35417.2278 332377358 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7970.241 7272.3627 2588.4865 3442.0905 6995.6025 11114.5258 4704.6909 6989.3134 121825.6705 8789.1268 11568.5942 3756.8927 10213.9262 10213.9262 5392.4466 13797.9124 6356.9845 7140.9373 14915.1313 11093.841 3972.1204 12524.6403 5937.2327 7360.0989 10720.9267 12175.7578 5964.9933 6005.9887 5595.9549 10079.1687 11418.1924 9394.2248 383334953 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 170962.2 12844.7324 11961.3679 11884.7974 32583.4044 5876.4433 2954.2482 4075.1107 7000.4399 5570.6163 154278.7776 7094.826 4994.2651 7423.3359 15056.9433 15056.9433 3418.0183 16741.4456 8834.1813 5613.5477 42642.5987 9617.9575 8391.8684 5004.7712 6824.6775 6879.8379 13725.7464 7561.2434 10469.5678 5587.6258 7861.5517 7116.4545 8139.5998 40716.5761 241774118 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 5009.0215 12387.2542 10247.6725 8897.7462 13302.3875 9110.3234 45300.9013 16884.5733 8849.9695 8505.649 6992.5456 165138.797 7629.8934 11373.5077 7432.4121 6382.1777 6382.1777 10233.3692 20887.6433 13054.4293 10938.9438 10943.7211 10013.7907 4068.0488 5221.5052 9558.9251 5267.9264 17779.7854 9278.7292 11149.1424 4912.8744 10747.4891 33092.9547 6004.6036 11090.0404 90954641 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4589.7351 8454.6439 15506.9919 2112.3111 7224.9532 6140.1157 6787.6163 80043.6788 6214.2711 5161.1624 25683.8152 25683.8152 2868.725 9537.4027 5642.5179 8840.7004 2530.3766 2679.8031 8789.1558 3388.3215 16526.8291 7760.8665 7794.6685 3025.2572 4747.1569 4300.2407 3281.8114 5384.1459 296128549 glucoamylase Carbon Cycling Carbon degradation Starch Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 84317.3674 10861.2203 65678.6463 33514.5508 16771.4114 32973.8084 41938.37 232925.7464 45047.7716 135985.5747 69770.746 270262.4674 1515038.5581 55468.2571 166567.929 348745.1809 82117.2748 82117.2748 149298.0797 80098.3581 53072.5666 184965.1696 68134.6493 46336.595 144384.1323 389905.0948 134143.1097 39811.9133 162095.938 84008.4229 149468.0919 36064.5728 83633.3967 61489.8198 30692.4458 44052.0895 88706368 PRI Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 47983.8546 64193.4284 36194.292 162276.1775 7871.7602 30784.9838 50049.573 35719.1037 26054.6117 85187.3972 51025.0578 526927.8731 39232.7524 42565.3536 98327.7366 59711.3884 59711.3884 23998.1632 65283.5612 30427.9399 68391.0875 51248.2562 58175.7322 21412.546 48511.7146 43363.0589 24886.2676 75082.1642 44871.4382 48619.3161 450485.8399 76521.5705 48220.4225 74308.5189 208688.8669 344224010 SoxA Sulfur Sulfur Oxidation NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 7270.1179 84261.932 6661.3629 31303.1405 2850.1748 11014.1306 2207.5822 15124.6732 77233.3204 4791.6551 6455.1582 10740.8761 7837.2081 7837.2081 2783.7116 5320.3598 6339.7719 5418.1438 48829.2182 14652.5588 4357.1544 23869.7429 2582.2337 10732.6541 7758.8959 12854.3868 6976.6767 7750.7266 3111.9982 3407.7401 187726416 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 17341.7236 14590.89 24482.4887 35760.0155 11941.5537 18065.2195 42320.1265 9342.166 27181.0254 18636.0808 15599.0269 303329.8038 18712.632 19593.7217 14140.3081 18026.9668 18026.9668 11294.7473 109426.6045 31983.253 23585.905 256232.3912 33065.6442 12628.2434 14281.4646 26149.9749 11395.48 47278.5879 28056.7113 26370.9472 14322.733 18837.5945 163154.2656 19027.4702 27570.5916 21929222 mnp Carbon Cycling Carbon degradation Lignin Phanerochaete sordida superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 588950.0315 67963.4556 900148.2136 498022.5305 821841.1301 269482.1969 577956.3754 600012.3943 331962.7494 397652.3624 683368.399 400616.4362 13208790.5133 393730.6527 537536.242 1299587.1155 440192.8795 440192.8795 353018.2856 560001.5024 332735.5864 521486.9496 680985.2209 2229947.7652 290871.7631 370558.0766 637961.163 338836.3048 1285481.8075 469403.6403 774426.927 454596.8257 380810.1779 416116.6258 299464.4897 885921.9562 302465316 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 19523.9735 10287.6539 13770.2021 9080.6746 7833.0707 6277.986 21147.5931 4294.2806 23215.0115 32595.6974 14080.2739 317823.4463 13676.0683 22232.6937 28098.8397 17113.2586 17113.2586 27841.7436 35973.4788 11891.86 14299.7689 25963.9234 569924.6421 8874.9229 28791.8943 23100.2107 11636.2816 27105.6566 24055.1903 33588.0578 8315.6148 15497.681 14563.9775 17776.9392 15510.8382 399544645 alkb Organic Remediation Other Hydrocarbons NA Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 7553.4473 2574.4732 3884.152 77745.5237 2927.8176 2927.8176 6344.7984 9547.6004 3088.743 4770.5483 7678.0577 2928.9125 7480.6054 99083075 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9352.7252 25070.8579 8299.6114 3873.6624 31909.2687 3347.5532 4963.3976 5755.9983 5408.1928 132403.912 6166.6949 7140.6408 5163.8471 3131.2623 3131.2623 4374.0349 13534.7365 6236.2607 9961.6969 18495.3724 7273.9693 5087.5486 4744.8158 14469.8218 27501.3585 14659.8475 21238.613 7808.6504 3348.4524 4847.4454 7972.6208 11174.6116 18112.3067 383826075 merb Metal Homeostasis Mercury Detoxification Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 26332.0908 11639.1966 7002.7788 26714.6006 18703.9717 16172.7384 10459.1081 34531.1942 7384.2256 228554.98 18478.5944 370751.7403 67751.5926 12520.5658 22717.6048 49387.5563 49387.5563 10792.7653 34024.095 20219.6672 18566.7997 38143.1731 954219.4788 21067.1449 26512.673 12850.9232 17428.1035 47778.4289 78098.1064 32104.2744 19182.238 26047.0199 24584.676 23965.3036 15853.1908 206688153 rd Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 39664.1707 18708.0446 26228.584 19603.1292 19600.2596 110830.9977 226239.5635 15911.6475 98657.9309 55809.8338 25637.3177 491628.8479 33252.2811 31511.7822 38914.6965 54188.7914 54188.7914 32986.9428 29036.2195 45552.8241 20693.8342 30141.0477 45033.7299 10167.2697 26212.0404 43888.0979 75484.6648 54723.409 21322.7299 215063.328 24853.4803 28305.2043 45357.6848 42387.7647 34226.3327 388488318 amyA Carbon Cycling Carbon degradation Starch Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 27650.9328 13329.9611 21673.6446 8462.596 4859.8638 8843.7423 5212.037 7158.9912 24940.6281 10718.7351 180668.3317 13242.4897 8500.1052 17350.7809 14805.7444 14805.7444 4393.8533 21588.0422 8288.1953 7394.9782 20374.76 9402.8031 11954.6687 6831.6323 13673.498 7869.492 36919.4316 20652.2594 15188.3352 6114.047 10201.246 8612.2746 9253.2565 8207.5177 310763282 fccab Sulfur Sulfide Oxidation NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 163617.7833 15748.3174 56483.757 14676.2605 25563.0826 7740.7175 65541.9576 30006.8528 17341.7416 24175.6602 44671.0102 67835.6761 1017823.5006 65875.7931 33464.9098 50107.7241 41704.2349 41704.2349 20611.4393 62443.0626 36358.8151 31468.5302 42083.412 28192.3355 65979.0536 26622.3554 114020.2374 42764.9121 82393.6286 42538.0572 45290.2615 141558.2708 54184.1425 43314.4391 35539.0177 47688.1323 220923135 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 10784.7578 14985.8389 14951.5971 14837.7633 6394.499 4798.7836 6932.6318 9663.0871 7406.3308 132881.2531 11740.2696 9493.568 6726.1648 5684.0983 5684.0983 8332.8726 15561.7775 10088.4592 11971.1958 14725.524 7901.3482 7005.9534 4946.288 12775.6373 31498.5398 15313.93 12131.5376 31062.215 7488.8999 7526.9879 7851.0787 6440.2895 18211.3583 334109923 cysJ Sulfur Reduction NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 33215.6405 2031884.9838 568205.8283 119583.2882 13706.701 21682.9928 19104.4009 33188.5141 31069.5069 50372.9344 38511.0207 260123.18 14276.9817 19563.5675 29647.9451 51928.1139 51928.1139 26933.8531 42969.3693 15291.8436 23707.2264 36579.721 78814.6288 20151.5401 31311.661 25203.3464 27569.8258 50351.9301 31832.3772 40152.9318 10219.9307 23213.7356 76219.7342 19447.6293 72609.164 338997839 arsc Metal Homeostasis Arsenic Detoxification Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 5172.5763 4670.2196 3367.3225 4696.1715 3864.6036 7264.0181 4906.6088 4300.972 6093.5163 5112.2352 6169.3022 2440.5796 10202.5549 5380.1937 7130.9086 2896.8047 5237.2808 3781.0115 158337007 cysI Sulfur Other NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 5643.25 2986.3008 3960.1991 3211.8059 3299.8095 3888.183 2881.3483 89796.036 5655.6152 6284.7609 5198.5066 2972.9329 2972.9329 2998.4711 15600.1292 6034.4693 10967.8345 4470.6542 5323.6111 2955.8861 3040.459 8295.9285 3210.9027 10803.607 8340.4839 9624.1581 6419.1679 5133.1886 5829.1446 2934.4438 6093.402 212712965 nfsb_2 Organic Remediation Aromatics Nitoaromatics Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 5334.5294 41541.3506 13245.1941 4845.6602 4832.6176 6188.6432 3132.1294 6494.4557 38296.6758 70694.2566 7931.9684 7335.2469 30759.2678 3373.4331 3373.4331 4750.8767 11128.2588 123547.8013 26416.5745 4932.1016 6768.232 4101.4552 16050.176 4009.9247 16652.5123 12098.9882 10901.4142 6780.6279 5634.6357 7155.9894 3064.4983 14895.257 375131783 chitinase Carbon Cycling Carbon degradation Chitin Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8129.0555 5945.5139 4234.3737 13171.8547 6129.198 10278.6848 2634.7394 7832.3612 5996.76 112414.9927 30622.7743 4840.2424 3033.3678 3033.3678 4022.6527 9584.7043 10951.4596 5857.947 14529.722 5549.7065 6140.0535 8708.9005 11809.9031 10668.1019 9752.3089 10459.5727 9281.7563 4291.2178 3152.5303 5168.0131 6180.9392 5949.5502 302541001 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 36072.7129 1016332.9904 83237.8645 39306.6866 7894.4809 16424.4385 6564.6348 20008.1306 11367.6279 15975.9528 9696.8992 295781.7936 16084.9007 12987.4493 10873.1945 20014.9679 20014.9679 11104.5906 24240.1681 11194.1789 12354.0229 18064.6378 31982.3027 5260.6393 9170.5911 23564.63 5807.7936 58828.8452 21403.9165 29310.8236 7243.5657 38990.1411 9291.1135 10809.2665 12234.7708 37954324 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11158.7118 385884856 mer Metal Homeostasis Mercury Detoxification Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 63500.9493 14917.4873 21978.2029 11941.7873 5001.0276 11815.4209 112079.8508 13684.8782 26480.243 16409.9685 29351.0771 192099.3463 41934.6045 19282.6942 22366.0451 58508.1732 58508.1732 59357.6433 50540.799 109900.3115 22362.9083 35736.8853 43681.9787 14895.8853 40201.2266 28530.1684 36038.8688 53186.5889 35348.5253 36866.7877 15005.8273 33686.5343 39298.1012 34756.2527 13284.2819 60416980 ara Carbon Cycling Carbon degradation Hemicellulose Fusarium oxysporum f. sp. dianthi superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium;species:Fusarium oxysporum; 13030.4044 9379.3883 12228.1842 5048.5838 10986.5299 4847.9113 9559.5545 12512.1756 6368.4479 285542.4198 15156.1642 17135.49 14702.7641 38899.9505 38899.9505 9508.8467 15808.446 10526.8469 16946.677 14058.2867 9300.7436 7017.1633 6329.7349 13427.5433 4277.1662 22146.4492 11826.4974 14820.6412 5389.9172 6680.7038 9269.4043 6140.3512 16021.9015 116743199 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25554.3781 2088.5112 3249.3505 4825.4916 69175.1075 3555.1699 5363.0436 2672.696 8006.8007 4955.872 5743.6195 5855.7099 6331.2511 2241.402 5690.4182 9708.6356 3993.6626 7033.4448 3440.7389 4502.9682 48370.2455 6155.2042 20977654 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 20029.0466 12582.2917 17481.2357 9596.7477 5140.2412 14794.7435 11147.9013 8198.4906 17070.4954 16732.302 7718.3756 393771.587 21061.6551 19863.4903 14460.772 11899.5265 11899.5265 12487.6865 24454.3912 16904.1536 17332.9709 24390.283 25460.1927 8100.731 7622.5013 21382.63 6945.4935 29005.429 12269.1598 20342.7239 10441.4451 10245.2048 11886.8365 8266.4368 26309.6302 373880147 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5918.9823 4264.3827 4196.9265 3815.2206 4036.0909 163333.0386 7488.0614 4653.123 6048.6425 6048.6425 6530.2774 7490.057 6808.776 6131.5136 12691.8078 8360.1157 3544.3531 7204.2578 9424.0535 6827.6101 5062.0961 4145.683 5103.7868 7747.5904 269839119 mer Metal Homeostasis Mercury Detoxification Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 7571.5538 63326.5123 6113.0449 7833.344 4550.9193 4346.3869 2029.1892 6114.4762 71626.3315 4946.3219 94266.1385 14137.8392 6072.9183 5194.9321 13205.3235 13205.3235 5510.6983 18453.0852 6679.2598 7862.1079 10076.05 6257.8894 3845.2182 4983.5191 8796.5852 3497.0489 22796.3038 12936.4252 13858.652 3560.2645 5008.0104 6973.7707 4504.9346 11758.5001 337733865 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5628.9165 11306.2516 2779.7805 3221.1899 5018.5071 2573.0935 73083.2672 6532.5824 3408.9687 3910.9082 10009.7365 4647.2977 4470.1868 2603.9457 2079.071 11777.9795 4687.6766 2789.5079 3458.9538 3733.0443 3216.6495 4664.6728 227934777 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5963.3236 7900.172 5757.595 12675.7746 9462.9912 4880.5485 383641166 amyA Carbon Cycling Carbon degradation Starch Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 7338.2638 15931.4685 14488.1957 6467.2642 9428.1381 63855.2414 10330.1437 15159.2024 11292.8278 23776.976 124210.4272 11821.5894 8523.4579 8513.5295 4887.875 4887.875 4847.1049 15019.8281 8789.5553 7245.2516 7786.272 9986.0196 5353.4342 6203.5269 15371.786 5300.1082 20927.5425 13114.7807 16382.4367 6110.9985 12532.6995 13419.7838 6604.5053 11870.9328 303280435 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 34516.6382 36848.2072 17677.8696 21537.2014 22537.9968 18332.6287 18251.9244 19501.711 23984.1997 10851.3754 430659.1446 33080.8184 28163.6622 19286.8053 12810.5843 12810.5843 21127.8231 43297.1676 26354.4652 25289.7517 37564.1456 36063.1718 11224.304 12451.9428 34970.0804 14116.2858 48417.0425 30645.2348 33642.873 25219.6775 13076.7323 20888.4576 17974.1007 62529.0249 13517319 amyA Carbon Cycling Carbon degradation Starch Erwinia rhapontici superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 1007150.4735 12712.9589 6796.3 3924.9728 6044.4691 6629.2092 6027.6632 5374.7025 91227.5797 3966.6662 3966.6662 12573.6176 4746.5369 14934.6294 10071.2447 4711.093 3442.8978 5324.4402 9473.7609 13376.7144 10058.4944 6145.5836 8503.8863 3403.0494 5444.3865 6682.0843 2836.4221 20792.6634 358636016 tktA Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 104352.7129 39679.0951 136711.8135 113014.0368 115475.1861 48100.7432 106295.3004 159291.1619 106653.4168 175436.63 95942.7988 116932.8095 2260633.3474 105459.7059 88929.5828 110090.7909 82152.2926 82152.2926 57287.5691 133427.5924 68499.8612 124274.6928 103253.76 120344.4989 62350.7606 70931.9183 115644.5323 96771.6397 180381.1613 100886.1065 104958.2086 113540.217 55346.5318 79880.0402 130286.1183 90646.1494 386692596 urec Nitrogen Ammonification NA Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 116162.337 72005.0331 39242.6724 29883.8048 41189.2912 16888.2078 80272.8523 201519.0001 55522.1411 77080.7985 52540.277 93561.8334 850776.6515 78881.3551 30293.8069 69345.3166 39027.9299 39027.9299 120553.9275 79386.9079 27476.0706 52532.9336 99051.1832 34562.2855 62458.491 26817.5466 46274.47 273291.9946 220858.8177 50372.6446 52264.4371 306950.3979 161152.0307 91330.5168 39526.131 68335.2777 94555367 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 13953.162 14272.9733 85058.1617 15391.2944 18333.4034 7993.3449 9932.3909 16027.6299 13986.0221 229697.2853 22377.053 17138.1693 12688.9312 8618.5051 8618.5051 10330.0901 43746.6946 29133.5738 27113.4682 7735.3561 16780.1936 5956.3682 14439.3786 11971.4222 9103.0937 36883.3918 12757.5797 61512.5592 61921.0848 9793.5493 21175.5032 9429.5323 20504.887 401675514 phn Organic Remediation Herbicides related compound NA Enterobacter sp. SST3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 4804.1932 2511.7846 4506.4322 212529588 nitrilase Organic Remediation Aromatics Other aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 37293.8397 24804.2699 16202.2303 35064.9956 23352.3593 7960.6234 18725.0073 19227.1539 14296.2361 25358.6511 38672.1341 15461.6852 610520.6684 36090.5484 36919.0136 22174.247 15254.0714 15254.0714 22775.441 32291.6857 22647.1651 25148.3776 27996.0704 46573.688 17235.8388 18914.9357 32682.473 17943.9401 306524.9335 109683.4213 32344.2307 11870.2454 27057.5074 22261.7592 14783.3513 47608.3635 84387650 chitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 5541.6403 6739.327 8952.3909 3250.6172 2963.2342 5366.2093 2714.3472 64441.9178 3563.4939 2422.5351 2422.5351 6760.1117 4766.1358 6548.2734 8490.298 5176.7301 21868.7726 2341.3918 8299.8295 2538.5908 9916.2176 7773.6764 2173.6699 3567.4313 4650.71 2367.9412 342797751 cysJ Sulfur Reduction NA Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 32308.4066 16536.8017 24515.5943 154260.5962 7917.9556 23005.8704 21941.0578 17119.8453 27552.4966 26725.2264 23476.6426 505013.3174 23416.1948 19521.1287 21687.8077 23609.1947 23609.1947 20678.9481 34867.0622 38573.3713 24072.0824 32054.871 42804.5732 14048.9288 23382.3316 31737.7833 37505.5702 63997.1056 28895.6309 148773.4156 45734.4819 22729.7099 24673.8063 23410.0353 57147.5452 147886004 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 10254.3174 8599.801 7723.3598 21876.705 9014.8312 4291.2753 21472.7948 3106.7815 8204.9817 10589.0803 23623.7253 162229.1908 15985.2156 12300.7252 8488.497 6924.4105 6924.4105 7937.6525 16704.6652 36810.474 12412.3222 12032.3666 8127.2033 3882.132 9952.9262 17665.3016 6217.5409 26699.5289 14551.3027 16646.3258 5398.1175 9238.6757 9592.2672 5221.3284 129230.3126 115375191 endochitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 72446.218 9720.7106 12362.9683 9973.5683 32935.0875 50660.7819 32671.9949 18310.6414 33676.573 22374.4999 12996.5993 398335.4707 22769.0622 25440.3649 19004.6789 16864.681 16864.681 26344.329 35744.2005 17779.6975 30036.5077 58404.9042 17788.0174 15435.6954 12146.7212 22951.9721 11034.018 45258.449 24669.1721 31444.8339 12039.2588 16284.3219 28115.5583 11838.902 26941.6253 82470014 mnp Carbon Cycling Carbon degradation Lignin Ganoderma formosanum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 87995.9575 194380.1275 65600.0292 16707.9815 24441.305 7528.8933 41674.6428 37555.9883 19879.1188 34371.6156 41803.5678 33851.4717 1577599.6042 24127.6102 46152.8269 22372.4732 12801.7718 12801.7718 53236.9571 90567.5202 29389.93 28353.6407 36250.7428 67946.3191 11883.9975 20603.2724 35478.0607 44449.3688 100755.6729 34447.4602 32088.1488 45911.5768 33271.9547 56462.2954 123589.6936 33183.0923 226328665 cysI Sulfur Other NA Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 4634.5579 4251.7213 3884.1223 2679.4537 4103.4181 6660.5469 2640.0701 104561.9357 6797.7448 7099.2588 4772.2193 2328.4382 2328.4382 4749.3412 4455.1343 4526.8111 5436.5142 3281.7953 2690.2393 5714.7214 2483.2546 14074.7916 6425.4985 5978.9509 5005.2105 3776.87 4154.6615 2492.3662 254487807 ppk Phosphorus Polyphosphate synthesis NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 32493.2363 25587.1292 7291.9307 17273.4881 7314.1565 15369.1661 25719.0873 12783.7213 11567.2205 16034.2348 15027.6748 603132.9369 24050.4531 42003.6022 27342.8025 10730.3575 10730.3575 17850.191 61336.8448 18477.4969 97528.0622 22942.9135 21445.6531 12517.5483 14409.9071 22217.4346 14476.9883 43156.0659 50211.2594 47152.8691 11655.5223 14004.5967 37845.5386 12448.4153 55071.1473 39725457 badh Organic Remediation Aromatics Other aromatics Streptomyces parvulus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7597.8274 6062.0755 5608.164 24267.758 3307.9382 89314.3133 9309.1505 2746.0039 2746.0039 3552.7623 7483.0506 7595.5447 20186.975 18088.5227 11828.4216 4821.902 4550.2515 10442.9774 6584.2417 7108.0553 8174.8808 5075.2706 15526.8968 343805654 TIM Carbon Cycling Carbon fixation Calvin cycle Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 50768.2227 32241.1671 5351.0896 8663.0364 3407.2872 2215.8962 2734.2099 6098.1825 6294.0593 8597.0342 74287.1471 4385.1583 5155.6759 25273.2834 4500.7242 13999.4108 6804.7619 5331.226 11599.9583 4969.8386 4580.543 3093.0181 8497.4107 5312.3545 15484.9642 10418.9715 9356.433 5454.4293 8341.1147 6078.5147 5944.8879 8092.3961 325538715 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 14961.0399 3082953.235 36906.4283 158189.712 8750.5733 8536.3774 4827.8612 4689.3651 20954.8215 10620.4272 491270.5346 4676.9297 3655.6655 26495.9768 8498.5168 8498.5168 35487.4414 92911.2618 10546.584 6819.8355 28098.2097 4601.3386 14600.8094 71695.933 6728.2658 18631.5905 65304.6499 24124.9563 23366.5374 13790.7245 44205.6626 23085.7374 7656.8716 30612.2598 116671894 ppx Phosphorus Polyphosphate degradation NA Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6682.0604 6914.2008 5332.5517 7564.2508 10076.3872 2751.1067 7129.7468 6875.9113 7415.0153 174232.0385 6447.9846 6592.8885 3875.6216 3875.6216 5292.8225 11769.1485 6565.535 3578.0492 9378.6088 7030.8897 3159.3649 9620.1496 9040.2714 3261.7273 11946.1308 5289.007 6836.2571 3242.9627 8274.7885 5132.0507 3359.5994 6460.7397 365818710 pcpe Organic Remediation Herbicides related compound NA Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 43231.9949 17237.4136 25897.2656 29557.1189 31108.2533 111086.8902 19726.5937 26896.2378 36852.5012 21413.457 674176.0817 51769.0781 37244.2429 36666.5728 22044.559 22044.559 93856.0392 43254.3147 30476.4017 285737.0359 32264.7379 43765.6609 16416.9502 25809.8945 34331.1397 20290.8246 59793.1772 23300.7373 39813.7642 12844.2909 18044.7617 23142.4045 17411.7113 97579.2511 310867617 phenol_oxidase Carbon Cycling Carbon degradation Lignin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 10563.0409 2968825.4726 848587.7096 8564.092 3536.8799 8366.2898 4492.8515 7058.6464 4483.1997 81719.95 6982.045 5364.8108 1784.7112 1784.7112 2585.2745 8689.4553 5040.9714 3349.0195 5015.6692 10937.8826 3184.0091 3670.8401 5091.5387 3146.9845 8779.1406 3228.8405 5569.4781 3718.0901 3040.8227 101421.6531 261857083 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14830.3968 10268.3779 771415.0727 13514.0524 13318.0047 9178.7548 348599.32 4603.0673 14605.7378 20274.4216 10740.5805 414080.8236 25393.6049 22630.3089 33808.7513 24812.6077 24812.6077 91942.4751 40924.0122 14765.2651 18943.2387 14465.8852 12764.326 7497.7367 11539.2825 16519.8234 10311.0302 37403.5523 8426.3315 28095.3291 28032.3719 12382.7156 10204.448 5936.9978 29914.6203 281357326 heparinase Carbon Cycling Carbon degradation Heparin Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 82589.3087 18820.3974 27003.5007 11086.1569 21647.8238 33287.8253 207169.2542 23496.2479 56147.2783 74622.8816 57203.8144 532726.9724 34214.6294 63874.9894 53944.483 35100.0368 35100.0368 93128.3911 56977.0455 22353.8702 184154.7091 116841.2835 112014.3238 48626.4125 83336.0294 58825.8666 46769.0951 107206.2971 24932.9898 45608.2999 35183.4618 27521.8726 52097.9174 36839.9338 57879.7011 179347374 chnb Organic Remediation Other Hydrocarbons NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 325074.3281 13525.0086 144455.2703 1273594.5668 310823.7631 114699.2347 302146.9545 248986.6533 184063.9918 201197.9387 218385.0891 186297.5782 5644384.6783 114361.0222 216044.711 371046.6743 187996.0731 187996.0731 124487.6212 301211.4684 107121.231 292099.075 218931.4314 153716.5101 159981.0223 174680.6814 207863.2426 185512.3474 381710.2779 367891.1496 294691.2163 203621.6509 178199.271 176675.4554 98183.9878 213959.0131 188583366 soxY Sulfur Sulfur Oxidation NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 500321.9592 392086.4877 294640.6483 492623.4402 374952.8191 1649673.9984 172009.4619 262791.236 138496.4851 173785.4992 286483.6476 221481.9976 5890289.4505 286398.9416 515332.2535 443025.5882 290751.3578 290751.3578 189299.5911 219803.0186 179500.204 287204.2408 625793.149 155589.7922 160906.7761 173224.0696 249266.6014 338195.7611 456082.5331 535604.5554 253873.9375 108639.4006 159450.2509 205005.2972 176808.6041 357332.5629 30025895 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21817.0109 24986.2746 17868.5312 6767.5098 13007.121 5097.7065 25113.1239 9834.119 10746.9435 14529.2845 15484.0331 8037.3264 467318.9523 7428.3332 13902.81 16352.3049 12012.8108 12012.8108 8088.9691 20500.796 13862.8003 16324.7709 14262.3611 16967.4533 7446.4536 12541.3629 15629.1948 13114.0138 34907.5634 5586.3897 16724.147 6484.3232 14149.0827 14554.1781 15165.8388 27161.2865 296282018 B_lactamase_A Virulence Antibiotic resistance Degradation Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 4840.9574 6324.277 4413.4244 7461.5847 6829.0932 16422.9042 15882.3537 13872.8371 344928.121 4596.7146 20589.3168 10161.0545 6473.8629 6473.8629 4185.1741 7335.3127 4801.7704 4639.5651 18616.9203 5477.9615 2418.3986 6617.0151 8462.9109 11333.9393 31594.2818 7771.9313 7894.0749 8486.2533 6398.4639 5668.2001 8812.4768 18894.2484 118619182 linb Organic Remediation Pesticides related compound NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 70224.5075 66314.0804 7152.7745 7080.9816 17390.5474 11261.4885 8354.7954 22433.2798 31638.9246 262749.1047 13266.0521 11469.53 14036.0126 10990.8653 10990.8653 8243.3976 17920.5174 11045.7103 26997.4226 21439.0889 18250.5211 12433.9824 23800.9183 16881.6448 16345.7958 42790.8924 13856.2343 21926.4761 44121.0655 17832.9082 13137.8966 14039.3399 42198.9661 63029757 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4974.4821 3050.0504 3973.4238 2112.87 4040.3539 4305.9617 2820.4242 54985.6798 4728.3187 6038.6981 24911.9767 24911.9767 3225.6009 7977.1117 4289.2671 4022.587 5547.0435 1991.5055 2708.2405 5790.7803 2810.0052 8692.0195 5445.8644 2565.1787 3478.2762 4635.7389 65314.6959 5614.3882 302389122 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 305230.5141 64808.2958 201766.9856 456358.903 65694.915 25188.3651 80767.6371 366392.3718 52493.6953 88496.7496 97118.3636 81774.2345 2669469.4577 103928.189 306056.4451 98370.4056 60438.0868 60438.0868 82075.0317 143831.6486 94450.5807 591790.0543 188738.5029 100578.6876 52651.3332 99715.5031 125254.0811 262671.9591 243219.5814 180903.4093 199260.039 59762.1702 75037.4762 121609.0377 198107.6492 126158.5062 375159622 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 13045.571 36766.9887 23089.8237 16083.5725 8665.471 7059.4488 8173.7629 13188.0102 15698.9885 6257.1118 306933.641 18954.4203 14211.1864 15960.4435 7579.4244 7579.4244 9844.3904 24331.7006 15274.3025 20012.3366 19979.2551 18917.7604 7764.189 10121.9977 18679.7377 6389.8359 29708.2328 14594.7022 20517.7615 7633.9845 10756.9865 12093.5563 8401.8998 23160.9837 85712424 arylest Organic Remediation Aromatics Other aromatics Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 30110.214 8435.9649 9970.7987 7670.2842 13386.2711 11496.4328 9403.2081 16970.1766 13509.5918 4567.4707 285244.5535 11048.3633 12345.0401 10149.4778 6136.2299 6136.2299 8966.131 18838.3704 15012.2431 15121.8741 15686.6874 24819.4295 6570.9767 5844.0864 14739.4336 7246.9186 26721.511 15712.2002 20488.9621 8296.3823 12370.3889 9733.7148 9754.0449 19818.8725 225388479 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 121939.2695 28797.2185 31209.063 54183.8117 18974.2871 45549.8641 18412.0175 22603.2869 26955.477 19730.993 719361.4609 28434.9913 37280.4261 43916.8182 58970.859 58970.859 59827.1756 55484.369 25564.4815 439942.8783 42237.7419 50005.0381 39698.8456 25796.0337 49855.2152 30921.5271 91187.662 22264.5792 40038.952 18226.1004 32195.9597 24077.6586 48305.0716 155787.9279 333898686 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 24111.1571 6855.6553 15878.1331 18334.374 30662.2986 16114.2496 15768.1453 19430.8687 11541.3267 303153.7155 14212.1909 12288.9136 17362.1015 15226.9354 15226.9354 9378.2399 22450.8287 25982.4788 38863.749 40232.9688 19321.6256 5426.7315 13750.0422 22856.8775 11148.4783 47871.1918 25763.7231 19784.4871 8286.6069 9450.4663 17361.531 16078.3855 10961.1406 340029387 ppx Phosphorus Polyphosphate degradation NA Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 22070.5707 9837.2056 16615.6979 20386.2626 85506.3547 4232.7159 32063.399 32960.5575 15713.8397 21031.6491 22762.9786 38419.4167 560009.0531 28439.76 28207.8431 22143.2668 14101.4609 14101.4609 16710.791 45518.0636 33785.1228 34481.0685 32231.091 29618.992 15855.45 18562.7854 39958.4016 22971.2347 59720.0951 70610.7008 31362.1779 39716.2062 28507.1144 22807.5582 22692.5279 56196.7338 114307799 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 45834.2516 12261.0484 16384.5442 1252670.2461 118603.3694 45575.0462 27223.8892 553902.1886 13998.7314 29171.5454 26556.8006 21964.8851 984745.1657 47310.32 335144.2913 1606533.2295 120178.3752 120178.3752 29960.4136 53611.7129 30605.0021 698125.8795 22076.7634 19181.6247 11291.1072 34528.0991 57271.5149 20300.6711 64032.681 40951.7095 51350.9727 102473.161 30153.5156 33505.3105 15607.7846 132199.1681 148271358 chne Organic Remediation Other Hydrocarbons NA Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 142332.5045 48884.0323 410549.7792 54106.3277 153230.1637 38380.3127 61580.705 108126.442 88229.8339 110110.1935 126255.9775 174077.2559 1777665.5888 94425.6396 149061.2071 435129.8505 169348.1059 169348.1059 79137.3171 140812.5667 114528.7266 81077.495 166145.7743 125570.373 82368.9183 81074.2056 140032.3739 84069.4059 172945.5605 139391.9232 112139.7318 60528.3226 65416.8864 65689.5333 46708.1878 115712.6905 26278746 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17391.2987 11592.9998 5663.9308 17279.7977 5113.1305 12815.9065 2085.4874 18631.5191 14975.4213 8574.9843 157352.327 8797.6921 6897.5475 16362.3341 18691.1717 18691.1717 10124.9682 12228.5856 8449.6469 6875.0221 10651.5211 9256.8182 5401.9162 7199.5218 8234.1232 23668.0492 29585.9069 12556.9029 54063.176 35557.4664 14209.88 14402.0393 16633.8987 9988.6317 88866014 rd Organic Remediation Chlorinated solvents NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 4698.06 69523.8064 4409.4642 5010.1101 5292.0629 4742.5134 8081.4048 5255.0357 9995.6472 4234.0795 54352.8083 5060.3074 3591.0922 19500.2897 15563.3142 15563.3142 3952.1516 10952.698 3819.9818 20479.0715 8132.727 3464.4739 5752.8302 10678.9394 4277.8888 7628.6096 19178.7453 12650.4538 7071.5069 7671.6825 12180.8316 4986.8428 16700.6442 72122182 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 35606.9533 176937.4812 43659.789 53156.9058 16061.9493 25639.8288 23589.5434 13165.7337 28263.038 32969.6138 41773.277 488617.0457 31104.123 32324.1141 65065.5327 20264.9427 20264.9427 18828.0368 84132.8755 52938.7637 85634.8811 35260.2987 30191.179 19880.3172 29978.0748 58145.7163 21810.4442 83755.0706 54543.8076 74111.3307 37518.9924 26612.3122 31570.9906 24346.9783 50976.0067 56798381 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 59557.9615 21795.8449 30069.6713 365381.9358 45166.9115 12097.6712 45080.4527 39982.6529 30984.9304 74241.9734 45455.7125 32817.9392 1158627.8964 58042.5082 52158.0335 51782.1715 28157.6065 28157.6065 24442.5607 42916.2996 70772.2554 49268.6322 44858.0827 75124.9152 27899.8363 24641.865 42798.7081 31191.0482 116149.2532 31710.2776 73544.09 36199.8248 30769.1779 181025.0341 23753.4093 81592.2327 89347539 terc Metal Homeostasis Tellurium Detoxification Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 11206.3407 7550.0653 13256.4096 33028.2589 6834.1773 5657.0923 7782.6487 10498.8177 12098.6552 25813.1453 104081.9411 8756.3474 21940.3569 27812.4503 6818.8087 6818.8087 16300.8372 11580.3912 7398.0698 8628.0366 232745.5883 7978.7329 7249.124 8129.2147 16882.1675 9246.0779 15180.9128 26271.928 13364.088 4440.5426 5084.8843 12045.0801 6311.3344 10608.5455 226347108 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6771.965 9782.9137 5008.4771 5107.6632 2664.0467 59906.2742 4615.3822 8161.6094 8161.6094 4259.4555 8925.0654 10791.702 4433.4625 6638.3549 4456.0149 2577.7029 7409.4438 2730.9343 9898.1177 9018.7617 8837.9768 3918.9746 5527.8528 3982.18 2874.4757 8204.6384 118468672 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 5920.01 13799.8898 2153.4573 3065.3601 4687.5788 4725.5381 2981.5905 2981.5905 12017.1807 4141.2185 3253.6614 8037.6324 10849.1052 4830.8466 1657.793 2691.0349 134268301 bphF1 Organic Remediation Aromatics Polycyclic aromatics Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 22201.9636 10759.6702 5328.6731 5726.1882 7667.2773 6055.0955 4730.2111 6958.2042 7455.5396 132544.4606 9022.8315 18611.7898 5087.8513 4364.6424 4364.6424 6218.9982 18080.4643 8922.4581 6559.5016 11425.5526 7586.2206 5005.3281 6037.3846 14545.9939 5395.7121 17110.2344 5546.0171 10982.2666 19699.2725 14812.3983 10269.12 2750.4164 12937.4494 317970394 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7557.4352 4098.2457 5444.5835 3480.9564 5908.8006 2153.8867 5701.6438 7918.7633 13517.7114 125617.8002 5223.6769 6375.3103 2614.2951 2614.2951 5018.3914 9175.0116 34606.2218 17650.2343 10867.4314 6744.3885 4832.1413 10033.6568 12655.8577 6916.3749 5524.4475 7182.177 10074.1011 3811.211 5886.7823 8152.3994 4490.1765 6978.6743 94553905 cmci Organic Remediation Aromatics Other aromatics Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 9469.7694 9235.5279 6674.029 11031.1165 10863.6102 7665.1201 10005.2643 7743.218 7007.2121 12907.7487 8780.6278 167089.1136 9319.3039 14728.3512 18613.5721 16003.3813 16003.3813 6829.0225 14940.1111 8996.2576 7759.9201 17351.6789 8385.1503 5498.2561 9204.3054 19590.3691 14099.699 55909.2628 9558.1032 12364.4395 4489.3992 8213.8065 14076.0372 35317.6227 36253.4266 121602602 FBPase Carbon Cycling Carbon fixation Calvin cycle Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 8926.4875 5983.2881 16252.3841 6365.2775 9356.0588 3982.9684 2561.6435 7158.4285 18747.7403 10364.6787 431607.4585 10136.842 12788.0947 19341.4744 15287.8208 15287.8208 13008.4803 23507.2626 17843.335 53934.1201 18888.9512 7665.3031 6739.3682 14049.4915 11355.9215 19828.9919 26346.3654 43793.2487 24481.533 6059.64 11635.9447 22300.6155 23083.935 187723.4588 164375009 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4980.0802 2121.7763 21220.3374 5722.2641 4364.252 8850.8071 134434.9743 9636.0239 7974.6524 4210.5851 4734.1394 4734.1394 3134.785 12979.0985 7909.8707 9411.6138 5614.9199 2964.2146 11629.3321 7346.9247 41643.8808 5844.9116 9636.018 4074.1359 6040.08 8143.2448 4673.6915 206678706 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 6988.1163 11757.9636 8075.288 12881.2144 10249.9032 7267.3151 6306.9954 8118.8571 23205.8709 5637.9333 766325.4947 11300.881 20032.3126 8723.8364 7333.6614 7333.6614 5355.4983 15383.4469 8634.2631 23518.2051 9877.7276 5544.0149 9356.9183 7412.0048 9388.5085 5164.457 18175.7621 11549.4353 13295.4668 4438.5564 35648.589 6977.8457 6543.8487 11453.222 89084678 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12294.5511 5311.155 15296.7426 14604.4584 11390.6959 5931.0087 10602.4459 15142.4272 19415.8684 9494.4497 226826.7183 24221.0268 15640.9467 8679.2328 12336.0188 12336.0188 9190.0747 19457.4288 13233.9765 41555.8795 27218.5347 14288.4939 7261.63 9488.7975 42901.9536 10314.5582 31450.0179 12418.7951 20266.9451 8666.4893 9800.9993 21034.78 16613.6633 24677.4023 374580161 arra Metal Homeostasis Arsenic Detoxification Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 10330.8768 22896.4885 18526.2693 13999.8296 6531.817 14278.0474 4071.2866 11345.3722 42675.1905 143664.0794 11064.7705 6435.7401 16516.8825 7190.7303 7190.7303 4545.6385 11474.5763 5957.5 66978.2042 3330.9141 3606.4149 9288.0139 2294.2598 11937.1425 10140.8909 9549.8455 3302.6171 6322.6677 4578.1597 7770.9249 13762.5249 38683276 hsp90_Fornicata Other Phylogenetic NA Hexamita inflata superkingdom:Eukaryota;family:Hexamitidae;genus:Hexamita; 10519.7539 13192.372 7769.8013 9655.6285 8171.07 7470.6851 6483.3848 12971.2739 9771.6304 7813.3686 288845.1599 12800.046 9382.4641 10085.071 5243.6899 5243.6899 14065.0468 17677.3382 13793.2777 7374.1104 16158.552 16499.5276 7394.3304 7960.5052 19193.7529 6709.9532 29629.9222 9956.6456 23208.8512 7628.3304 8049.096 12280.2955 9580.5669 28278.6361 323374932 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 73415.8307 14570.1234 116604.0404 38584.6066 144497.4334 55412.4929 44322.331 48030.1029 67657.6065 29566.6835 218547.9713 28712.9981 810042.7091 43647.0539 39137.955 86953.758 80954.5178 80954.5178 26540.6163 42583.4019 31627.2042 79293.2293 34883.6737 36283.7806 25850.6867 34688.0375 55828.8332 30103.3729 95796.3284 57910.5632 59942.6697 32669.6438 66495.4615 32867.7825 52401.289 44443.6317 388585099 nhh Organic Remediation Aromatics Nitoaromatics Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 3989.1472 2483.3024 2483.3024 3063.2853 5127.3911 2183.8143 192897600 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4144.7739 4450.9531 2487.7733 6243.7167 4313.2542 59717.3913 3432.2905 2401.8175 2401.8175 5783.3444 4192.8153 7835.317 2125.076 4851.7792 2373.277 6021.9381 2401.0252 2792.0095 67540592 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 12403.5352 20697.9917 4572.5418 22771.455 8254.6894 6095.93 7794.9552 100391.2498 8670.4139 49718.0158 13433.1312 741649.9241 18832.585 10427.0923 23400.1816 18706.3374 18706.3374 7220.1411 27045.3941 12486.7731 4935.8779 9677.2375 10740.0555 8966.217 18527.4515 17487.6169 7646.392 23683.2382 22583.5491 79604.4225 6119.4157 17399.3956 14942.1907 4515.502 7498.3512 76058364 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15137.8031 315334.2734 5293.312 6356.8839 11506.1022 28606.1786 18282.5636 8952.1983 101295.2916 9372.6927 17849.2133 10355.1585 22041.6121 22041.6121 12369.5796 30473.3788 12680.4426 15796.4471 16656.0139 5776.7689 4406.153 64642.6001 16250.5568 7115.5457 36703.9778 14494.6455 28824.4302 7390.4585 21423.179 9655.6646 8973.5684 19664.7481 89075780 B_lactamase_A Virulence Antibiotic resistance Degradation Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 5398.3988 7881.3686 5040.0554 9523.4109 4596.321 4122.1651 5528.0074 8918.4205 3775.9236 140323.0203 11581.1856 5871.8191 11648.0148 5809.8515 5809.8515 5008.5697 11978.8836 7884.9142 15273.2927 6976.915 13972.3905 5609.0448 3947.3629 9726.183 5709.35 10544.8051 8067.1055 10417.4413 4655.7192 6179.5337 7478.6711 3761.2091 6747.3875 318604391 cysJ Sulfur Reduction NA Yersinia enterocolitica subsp. palearctica Y11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 57984.4205 35622.3976 10413.6599 23379.4352 382394.8726 99590.8801 78001.1193 74638.1899 15011.2628 93586.6824 14225.4955 256779.8088 24207.6608 26714.5475 17318.4372 19603.5798 19603.5798 9551.5839 31661.7597 22525.4742 33429.4493 132978.1155 47185.683 27848.76 8599.8184 27100.2475 45488.2067 46216.339 17590.066 30302.7688 16318.3897 18001.8101 17945.5366 46973.0668 33148.1973 45386181 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 10637.3806 7805.1221 13999.5852 23176.9084 3463.5718 14385.1619 3187.5029 4599.726 5991.9609 5774.186 204753.9287 12358.8553 9615.8448 13203.5313 11120.4532 11120.4532 11257.8713 10234.1621 9110.6582 6367.4669 6507.2994 8579.4582 11673.153 46993.4121 10886.3495 24045.7223 14479.1474 26536.313 5411.85 13104.4893 10128.2839 4423.285 6644.0411 226944828 cysI Sulfur Other NA Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 14057.4497 8268.8373 11587.3841 3832.6785 5762.5444 8716.1228 4976.8851 341625.8908 5229.9982 2418.9487 2418.9487 5729.1523 5056.8793 4408.7521 5415.5571 9789.7636 2697.8269 2414.6257 7012.5227 14201.1242 4884.8761 3127.8412 3489.3456 6189.0248 15327.0639 15888482 ppx Phosphorus Polyphosphate degradation NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 104016.385 18627.6236 62166.3584 31963.601 21618.6435 13729.4122 21800.9297 14992.6214 33521.5224 1761556.4159 34415.7845 19178.0467 47035.8622 36391.8003 36391.8003 69731.8496 36685.9448 35593.5064 200313.4983 34783.6333 261687.8496 20502.7965 23106.6604 20484.5401 30845.89 62479.0736 46734.9289 21660.6092 17344.1635 22819.8783 23942.0182 48437.6339 28419.0726 82527201 silicon_transporter Metal Homeostasis Silicon Transport NA 4545.4978 11617.603 3559.9646 3682.4702 2319.6599 3680.7733 5848.6011 2215.2205 80086.6126 4200.5857 4404.3263 4565.3151 1919.6215 1919.6215 3926.1031 10093.0635 5546.485 4458.745 5925.5316 11015.6488 3007.603 4035.1411 6160.5254 5325.6523 13976.8959 5231.7742 8067.0747 3899.2101 4389.1107 4736.0421 4249.7836 7810.713 212678934 dmsa Organic Remediation Others NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 4126.2343 3214.2056 7157.9919 379618.5385 3511.9157 2143.6788 2143.6788 4278.3063 4129.2045 7424.1205 6486.2246 2376.2301 2886.2703 7573.563 2325.3703 6790.6357 3343.5957 29076.7222 294673702 RgaE Carbon Cycling Carbon degradation Pectin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 74456.0991 9121.9339 23052.9737 39249.1282 9386.8831 13129.9377 18387.9425 14484.57 16142.1609 31779.8235 11429.5313 571124.7623 19202.3682 24001.927 66411.046 28637.73 28637.73 11104.0176 28982.4367 22270.9417 23042.3279 18564.0416 29206.4316 9336.2143 11263.0487 26570.7437 8460.0841 34977.5518 25245.9972 42595.871 9606.6394 14114.2036 15285.7813 11637.4864 17106.1101 398822320 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4613.688 4983.6745 2411.5195 5087.6085 8438.6086 5731.3502 95366.9676 4774.2 17100.2471 3909.8645 5280.8458 5280.8458 3216.6487 13719.678 4559.0184 5696.7804 8847.7931 3332.6707 4858.699 12781.5724 4794.7053 20344.5227 4340.3961 7094.5743 5825.2127 5899.4582 4439.5984 3292.2451 7199.5534 300690412 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 15200.0037 25808.4046 5944.5554 3771.4409 2977.8613 8509.9072 7524.4818 7055.313 93639.9418 6761.5791 11686.3094 11263.606 16880.5908 16880.5908 8899.463 17259.7415 8046.2768 27831.9572 55634.6041 14046.4916 8743.706 10389.7267 9195.3204 15438.3156 15841.7674 10660.5518 7291.4668 17039.3009 17017.2069 4128.4175 5398.8516 89081924 arylest Organic Remediation Aromatics Other aromatics Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 4182.1704 5264.6575 4004.8107 3829.9361 13241.3567 77326.5555 4743.6255 36995.87 13209.3264 7033.7898 7033.7898 4048.3551 6929.3366 5372.2535 6220.5957 8307.5095 7545.7405 3650.7223 3190.4092 9311.2258 3536.0162 13979.403 6375.0834 7121.1143 3139.0254 4876.2208 5639.9241 3300.3827 5628.4068 334140111 badh Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 4437.4981 3138.8797 115223.9229 4237.6889 5939.8102 8104.1241 5099.8476 31139.8516 2497.1558 3205.9475 8738.1174 5300.6456 3943.4466 3898.9243 2980.7145 111618054 ppx Phosphorus Polyphosphate degradation NA Acidovorax avenae subsp. citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 10288.0568 7829.9872 1338826.0843 8594.5541 4623.6449 5426.9555 3054.214 7097.0921 10614.2403 4856.663 151017.9153 7632.0985 9189.1964 4753.7192 4404.8866 4404.8866 6576.7989 17135.3148 12643.9712 9463.4731 16567.9863 18058.7377 20059.0127 7192.6693 12805.5217 8536.5632 43242.0718 9411.4679 12311.1798 5912.9903 7276.725 11981.7897 4163.3544 17908.7331 354569612 FBPase Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 35227.186 13977.2932 32317.1181 55620.9848 10061.0251 11287.7105 58206.6 36996.687 27757.702 43780.0908 242113.0082 19984.228 13232.2891 16531.0773 19005.3807 19005.3807 24104.4262 52737.9162 19222.6085 11086.8716 27248.6303 25185.608 10364.0985 20743.4035 34366.6477 22477.9212 64297.5831 29016.2705 24562.5561 19142.2118 19938.2647 22884.8864 99504.847 27430.9509 121495628 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4908.1896 2125.7068 3695.2945 4340.8546 194396.9302 7414.5105 7414.5105 4158.7926 5270.0634 5869.1111 2650.8558 3036.0989 1180482.2229 77459469 ppx Phosphorus Polyphosphate degradation NA Pseudomonas fluorescens PfO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5465.9461 5024.1876 6016.2218 2750.474 2750.474 6429.5876 4681.1835 7276.3019 2281.8986 8363.4107 4614.315 407977227 xylg Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 5640.2676 9026.6531 2193.4254 4278.2086 6246.4043 61132.7724 5463.7929 8242.6622 3357.0052 3357.0052 7840.5171 4494.0839 5066.225 3825.3895 2026.0498 4487.9749 6572.8323 2528.6508 15131.5775 3145.6031 223964454 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 30848.3396 12638.4959 21678.3097 31727.7076 496632.5214 11139.9407 66941.4635 52062.9178 41313.9943 117718.795 32734.6199 32759.5701 649348.4312 40818.4813 42714.7238 47074.5852 25429.627 25429.627 18332.4758 51165.0538 33335.7479 38521.1105 50580.2252 286925.2791 13055.8432 18568.2596 36922.9758 13290.715 68174.216 44304.7826 41097.0999 14820.194 55475.1451 25412.6501 18406.0433 35004.1036 316944975 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 217092.6554 9961.4987 13678.7346 7862.9836 16358.3174 4680.269 10917.2093 8070.9817 92107.1866 85443.7693 16247.6756 63557.0816 12821.4572 15085.0264 15085.0264 5658.0047 13296.0913 25693.6915 27449.8532 17861.1226 9571.4078 7934.7989 7971.3717 14997.6155 5209.2069 28956.2111 13904.832 15491.5039 6393.5757 30410.5203 15759.3093 19784.1745 14927.9439 145220136 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 52564.0855 221494.0688 143713.4871 35716.0848 15259.7319 5453.9737 6232.4176 2617.6698 6606.358 16034.6065 4447.7425 151671.4812 10548.3858 9986.8161 12200.9675 27293.0518 27293.0518 4937.4394 14238.0949 11983.3562 9641.6767 8715.0177 9241.393 9032.6536 6852.5136 18810.2901 4668.2305 23331.2429 13513.8897 13828.8943 5752.1354 8373.0061 5287.8231 5031.8086 10363.6725 111017396 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 16468.4667 15415.4016 10712.1212 1878.4357 8516.9459 19161.6064 11950.8852 6493.7834 7733.6869 35998.8914 34439.7664 8066.6593 8066.6593 3985.1083 35362.0898 8017.0801 7334.607 12566.3436 16086.4466 4056.5826 5970.7592 16453.6908 30599.5326 13170.4469 10548.4671 3555.5617 12533.4251 9191.4488 14099.5204 9076.7753 68536433 alkk Organic Remediation Others NA Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 11379.1508 5409.1056 9716.1787 4512.2801 3587.8515 4601.9734 4732.459 6452.6696 11285.0807 121974.3504 6927.612 8715.616 10151.4119 3969.1507 3969.1507 5168.9761 11275.5445 6349.9906 4031.3851 11978.7384 6879.9785 4480.2305 5381.2466 9482.1302 3863.5066 17743.1431 8477.7838 9519.1648 2639.3285 4848.1038 15994.6723 4549.903 8192.632 56553604 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Cryphonectria parasitica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Cryphonectriaceae;genus:Cryphonectria; 238338.4917 17878.0232 138019.8721 339082.9141 102434.0171 56643.6371 132860.9579 118713.4451 586986.8317 79330.223 160056.3221 84843.0227 7389322.7755 119834.7255 129780.095 130566.588 122042.8242 122042.8242 92085.8769 189133.9575 79026.6287 159570.5798 112752.0798 246192.8762 110457.9579 96943.4499 108910.8099 105435.1989 190465.0487 125119.9914 119832.8318 50652.2668 74594.2977 128342.0205 49566.9925 130440.8833 62425089 ppx Phosphorus Polyphosphate degradation NA Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 14732.1485 25124.5657 12079.5339 22364.6655 6380.3188 6666.3496 8658.369 4509.8353 7854.4978 10688.7203 9281.9878 237798.9915 15974.828 16210.6296 16141.2971 8656.6634 8656.6634 36178.8316 13721.0629 11207.9445 25007.8909 20013.3291 15578.6039 4763.7975 9020.3049 22670.9779 7382.5757 26994.4548 52553.363 22473.2012 8993.0252 9641.5045 12992.1084 10369.2761 11576.6588 346226091 ara Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 24905.1349 5007.1104 7122.8776 290474160 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 230218.3287 357165.3533 111576.9894 148210.7204 244730.8857 121119.8799 452627.9969 217837.4849 179429.7839 241913.4966 223341.7996 167105.802 9965509.2194 150446.262 321306.1702 618171.8336 361547.4112 361547.4112 127954.0903 193354.4439 111460.766 155462.2488 346783.5619 166915.1448 89741.2457 136286.1168 123487.0611 173530.2673 418337.3324 112694.2907 170474.7801 109149.7587 203731.3171 226614.0923 99911.2559 236274.0572 333741244 amyA Carbon Cycling Carbon degradation Starch Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 5837.8952 2448.4023 2702.0404 2764.3746 3041.7523 3627.2646 69115.0019 304510.4754 13845.5171 4029.9758 4029.9758 7238.4016 2374.6002 2130.7219 11714.9572 4411.6884 7004.945 2784.1537 3418.4467 5643.4781 2139.8111 32307927 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 242510.7408 6853.7733 6950.8617 15830.2121 9561.5658 9400.5357 6829.0762 6873.5103 5636.3894 8175.4524 21379.5878 166029.11 11505.0304 7391.7659 5746.3769 5101.4122 5101.4122 4552.1829 10541.6987 10636.4706 7404.5976 27115.691 7549.4682 6504.3044 4561.7419 16906.7025 14544.1574 17149.2545 9350.8683 10527.8769 5791.5987 5714.6277 6466.019 5604.9998 9382.4101 301089413 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 9855.7266 14953.9258 22009.9205 16211.4191 40599.8727 15313.6915 29785.4605 39894.9401 9423.1838 7208.11885 122314.3632 8418.9437 11445.2665 6140.5373 7062.3639 7062.3639 4928.9956 14880.2314 32107.4306 16367.3078 64444.4709 3750.2095 4720.89955 138356.4207 5435.093 31072.6524 13519.97355 17648.8513 95868.3481 3933.8333 5724.0157 114706574 soxY Sulfur Sulfur Oxidation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 9631.697 6197.5948 7717.5096 44018.7035 5277.103 5144.6637 7391.9362 6991.5782 7161.3285 10564.8242 5912.2967 176764.449 11585.1707 11928.882 12331.8036 6536.1568 6536.1568 7795.6491 18076.185 16278.6706 9293.8222 16259.1804 13200.4635 9258.8096 7392.7104 16735.6713 10105.2595 23131.028 13928.2038 19891.8463 7652.3898 10280.3829 10561.6724 6007.3142 17119.5386 390435018 phn Organic Remediation Herbicides related compound NA Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 23079.0152 71807.3308 557922.1853 7218.6611 27870.413 9362.6915 9032.0897 10982.3984 72873.8838 6646.5884 23914.3772 34946.0926 10622.3246 10622.3246 19325.5222 23438.3505 7766.3012 14125.7701 24567.2837 55130.9893 5131.6213 8790.9218 11253.9194 9792.4169 37722.9272 19811.2362 29148.8871 12939.9068 9453.0047 17012.345 9173.1121 12096.7273 149810237 phn Organic Remediation Herbicides related compound NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 50591.3138 145541.143 26735.4036 8670.5122 45587.5583 7047.6054 45412.4416 27031.7236 85802.6206 62914.5459 53540.9775 38292.3515 479860.2342 37188.2995 53392.6064 206377.199 52320.398 52320.398 24547.352 138999.9613 27621.841 34999.0411 45856.3913 57925.5931 20826.0319 26275.3881 29230.3589 32348.6332 65877.3586 24238.4954 52239.2002 18336.0457 33173.2169 36538.6984 20391.2402 107254.2538 334123686 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 6412.0366 5441.1928 3153.5583 7231.9965 2796.666 2882.8097 8768.0069 3767.7679 168964.961 8370.2629 8683.9723 4063.2457 4063.2457 4911.4618 13422.7039 8263.5598 17982.7089 11547.1158 4435.9755 4593.6396 4959.9324 7078.0436 8163.4456 335407.3808 6595.0446 11611.787 7232.0564 6514.4681 25486.6189 4626.3588 6768.3864 77378459 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7057.5368 35334.8707 24541.4825 5187.2487 71296.609 12367.5395 3701.7495 7883.8694 8434.4037 5283.99 4583.0721 3242.5373 156228.882 11593.5456 9934.4416 22222.4197 18520.2895 18520.2895 3323.2721 13382.8377 9063.3338 4644.9737 2719.8473 7270.9317 33954.0084 3559.2344 17798.5431 64724.5337 28177.0067 6531.3698 6109.1099 5785.9488 4977.6174 17736812 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas sp. PE2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 25681.41105 20205.0789 45528.21375 88049.5626 37946.9458 6079.6877 16489.90625 16932.1711 24487.35905 676220.9796 16309.0682 26241.1592 42060.1307 13672.3578 28271.29225 14304.30975 17343.983 20131.4975 48114.3667 389848626 chitinase Carbon Cycling Carbon degradation Chitin Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 10894.9124 9837.3236 18455.4599 4209.6726 10231.2606 3951.9508 6613.7083 12567.7216 11628.1763 4458.9513 271390.6278 9587.8334 8117.4932 8680.708 5665.3507 5665.3507 8058.3589 14173.6418 19017.2328 13269.5361 19305.0273 16858.9768 5883.2668 5400.0391 12492.5617 5260.0237 23788.3466 31073.8991 14953.7006 5921.2759 8332.2392 10800.453 5814.8577 14280.6162 374428620 amyA Carbon Cycling Carbon degradation Starch Halomonas sp. H11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7986.6779 1185475.5784 30624.4691 10960.8447 8006.1489 65404.3387 4961.384 7547.1963 21874.55 14683.1804 144688.8028 9280.7657 13028.2245 22634.5715 147734.8973 147734.8973 11195.0432 50668.5596 50626.1833 11355.6342 138533.8755 11895.1008 10662.9885 8815.9649 23833.797 47560.5617 25801.2657 46271.7925 21569.6575 6132.1965 24764.5599 13133.7917 9023.0164 10426.9896 58003123 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 29476.8718 11789.1114 5442.6268 6713.863 29783.5742 10054.0303 6410.648 13001.5078 17185.6879 7997.3053 148315.0086 10071.079 7999.6606 37635.9414 30864.2977 30864.2977 8101.3853 22604.7337 11448.0583 16765.8415 11003.9317 101186.5708 5534.4351 14398.4923 10631.4641 9734.044 30313.5552 17776.0798 15868.1629 9317.9841 14201.9235 8791.0868 9641.8379 14190.048 321169001 pme Carbon Cycling Carbon degradation Pectin Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 54574.5323 48805.0685 21896.4651 40134.5629 16092.8203 64374.469 17710.0898 23747.189 19057.0748 112628.2064 74991.3788 439573.4724 52655.1817 85389.4642 42950.5295 57967.4301 57967.4301 16882.9897 141302.0615 30678.8294 49352.0301 104155.1107 133644.5792 61983.9201 29715.2064 29195.9558 78911.0863 71057.4936 31982.2656 44507.9718 19399.6623 40973.8186 30741.8231 47603.3642 116140.4764 4545090 nosz Nitrogen Denitrification NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7088.535 2542.4372 2782.9792 3887.0819 9503.6313 10675.3567 155213.8718 6712.3491 10211.0591 21998.69 3624.0067 3624.0067 4956.9316 14612.5629 9643.6025 6364.5456 4803.2696 3126.9516 4683.2644 7609.9912 3927.7066 13111.7464 10034.1029 10193.904 35439.5774 9336.1619 5062.5787 3303.5673 6734.3439 223470353 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25000.0514 8558.8258 4758.4485 5425.393 8407.5647 9928.5865 5928.4297 12217.2838 16633.4864 9990.8577 189370.4584 13039.1921 10920.6893 12771.5369 10080.7077 10080.7077 8540.6534 29048.4846 19720.5247 10469.6061 14127.5957 5686.7809 8363.5858 6921.1334 18179.9917 4980.7285 38325.7968 20284.0179 15347.6385 8453.9496 10651.1913 9729.2583 8992.5455 18924.4039 86566820 alkb Organic Remediation Other Hydrocarbons NA Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9528.4552 9578.1893 6056.2004 12142.2537 7025.0921 21912.8276 11142.392 7245.149 8930.2255 3771.4255 236312.1091 11304.2935 14672.6309 8675.1106 8676.4534 8676.4534 16258.1485 19798.6128 11805.8218 11696.1747 18885.9226 16594.9105 27739.9782 8908.8358 13150.0775 5974.217 21360.0255 15474.1368 15786.8267 11193.6216 13340.6809 20490.0523 7682.8654 29185.6061 19352194 cellobiase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 5207.1385 4184.9111 4372.4129 2585.7875 4145.1543 6961.4438 2385.2411 2496.032 4526.6535 119411732 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8191.7342 58707.2143 5099.7986 3114.496 12658.7898 4705.3338 3261.8073 67020.9897 5390.2242 4875.9111 3607.8288 9238.2506 5805.1235 4265.3193 14218.4192 4476.3851 7288.7805 4928.2949 5501.6062 3039.7254 14405.0702 6282.1766 6078.4249 3010.6825 7395.6978 3996.4902 3775.8182 8575.3826 110822175 urec Nitrogen Ammonification NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 11801.5706 35373.6762 30498.6306 10469.4042 9400.4032 8525.8676 10736.1705 14216.5613 8619.0031 329195.5133 12208.4807 12638.8203 30878.7221 10974.8643 10974.8643 9313.8941 23527.7391 17857.5387 17647.422 35274.7677 77077.1988 12041.7606 20273.9786 17902.6202 8235.1507 34265.3973 29034.2956 31002.9698 12231.6212 16115.3354 17288.2539 9183.0437 17873.9237 324998528 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 10318.4427 7265.9099 18433.6055 2902.2076 3243.001 8388.1116 14516.8202 3083.1548 113802.605 9052.7314 9508.8846 6233.748 6233.748 5677.827 20923.3656 13513.4207 96422.5557 34062.8795 8831.9837 4761.3367 3706.9465 13661.7941 11043.5291 18003.2977 10560.3517 10052.7733 4469.9259 4602.6029 5307.9749 5010.782 19385.5131 284035282 xyla Carbon Cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 4688.2239 3425.4628 3237.6584 3374.5518 3364.3306 4479.2606 2176.3459 56370.9638 5867.8234 7014.4225 4995.8218 5455.2545 4612.9838 3214.4876 7048.3439 9710.6757 5782.6056 7675.1556 2781.8129 4115.8267 3983.3353 3768.1379 7194.094 254442020 RgaE Carbon Cycling Carbon degradation Pectin Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 12005.8909 6577.943 11077.9818 22974.887 6828.6752 7770.2457 7625.7019 12258.6495 14254.5126 5644.249 207123.9492 14468.6481 10753.9171 9083.6436 9106.9377 9106.9377 9099.5293 20828.8831 13668.9166 14576.7831 17742.2126 14100.4353 5483.5495 7327.6695 15338.2303 7313.2565 26172.8536 11093.7671 17250.2912 7253.7207 8550.4061 8899.1394 6932.4891 15094.8894 73762580 endochitinase Carbon Cycling Carbon degradation Chitin Isaria javanica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 4758.4685 10142.0988 6049.1034 9155.6629 29635.4982 18563.5758 18083.686 9896.3696 8772.9531 14192.4285 156632.7341 6714.268 26650.021 5410.0109 5232.8803 5232.8803 4931.2851 10625.7536 9176.833 3665.0163 5598.2957 6494.9508 3404.364 9597.3984 11355.9158 3541.2707 11907.3756 8921.3924 10204.4362 7582.7055 4848.5382 7029.4844 4000.2481 9041.1634 12513979 terc Metal Homeostasis Tellurium Detoxification Escherichia coli O157:H7 EDL933 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 8416.3315 2620.6312 3647.7266 5647.2589 12952.8541 63498.4321 3860.0386 6315.565 2469.2164 2469.2164 4222.2209 2479.7058 8068.5572 48760.4048 4644.2634 5926.8988 3977.3684 5265.9182 3304.2956 377570073 cysJ Sulfur Reduction NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 85666.1947 32142.8363 7817.5863 42986.9731 12451.4698 21597.5956 54383.2121 15926.5766 11270.9803 30350.1296 19823.3033 435666.0108 10612.6022 46353.0156 150620.0993 44920.4841 44920.4841 19281.9864 38180.4548 21772.7125 33344.8546 21452.9766 14480.7833 19747.9398 28839.5008 23330.3622 22080.1594 83053.9111 33761.0696 143265.487 15513.3037 15853.019 12543.8074 14136.4612 47163.4999 381397747 terc Metal Homeostasis Tellurium Detoxification Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 45666.109 13805.4653 21552.2747 29235.0234 65811.8918 10681.889 26571.6427 242267.5779 24907.5511 26081.5235 28041.6106 24061.0078 1151919.6303 127544.4407 33323.0378 35076.3469 35334.0704 35334.0704 31487.5944 44712.4373 30017.5606 33805.947 43816.0554 39026.3442 16369.5503 19112.967 36896.2818 16242.0635 182784.4284 34265.6889 56614.6473 18808.2557 24635.2272 24313.9435 25794.5667 40803.1322 73663770 arsc Metal Homeostasis Arsenic Detoxification Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 13496.3825 8948.4455 11878.5645 14360.5482 6426.6908 5086.6027 9008.639 18046.4587 8476.9953 155367.4002 9945.6902 10770.8692 7121.5407 4871.5808 4871.5808 8074.8804 15127.6092 9879.3858 9051.6204 14437.9923 10637.2159 5695.4048 6884.7047 12235.9035 15515.8851 23323.0286 7995.1732 14099.1647 29061.0712 6455.3896 10374.8629 8935.2948 28835.4842 359821868 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6339.4395 8311.5721 7403.9788 33321.8817 5074.6768 3946.0068 2721.8721 5051.9462 10472.2885 4838.6199 87125.6689 5859.8146 9606.1284 3092.209 3092.209 7267.3491 9668.5746 6530.1792 8184.3763 55226.7824 9141.7611 5282.0643 4952.3513 7862.4689 4745.5274 17142.9556 9779.0115 10847.2288 3969.6042 5321.3239 7801.3527 4490.08 9741.3208 393792767 amyA Carbon Cycling Carbon degradation Starch Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 109953.0883 46508.4179 7503.3222 14302.0136 10668.0935 21304.8539 35135.8158 33316.9058 31407.0283 21518.4296 23265.3948 639230.5269 13322.1141 17338.4184 18362.2921 34760.159 34760.159 11950.9126 27667.7638 15202.0695 18153.6511 152491.6531 52458.5674 195721.4088 15769.6016 31778.1618 16120.3175 37306.8332 28902.8968 44063.397 29844.3366 18375.7176 24146.5332 9230.9379 36629.8192 270298422 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 16272.5592 13495.5686 20305.7227 9867.007 11533.8187 14352.6507 9075.9918 14651.8342 16304.9324 8605.7764 320931.6207 23740.1859 14839.566 11949.2283 6874.1592 6874.1592 11253.2222 23251.2247 14790.4515 20781.4396 21033.399 22280.9454 49222.9733 8107.4549 19294.3068 6675.5714 36494.1718 6655.9083 20915.5166 8533.9013 15926.6502 12311.6243 7627.123 32251.7363 164455422 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 26731.4952 33732.2744 11945.8848 7961.3418 5102.2635 5350.2194 7123.5711 4958.7795 12582.4514 14055.4458 11241.3699 228800.0153 9227.0428 16582.9046 8392.0094 6447.0421 6447.0421 15228.1799 16835.9956 9319.2872 12435.6214 203309.7818 7482.3282 7499.1569 5729.1095 18379.4318 3739.3407 25061.286 6118.7117 22800.2593 8191.6462 6345.6498 8353.991 5843.6503 234229.4572 374990358 glucoamylase Carbon Cycling Carbon degradation Starch Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 20351.2217 12548.006 7990.1394 8878.5256 55384.9233 4948.1825 11842.4794 9354.8899 5141.8775 6656.9197 12544.4633 8288.0825 201651.395 20923.0234 13137.668 14729.3828 14098.1134 14098.1134 25976.715 33668.3784 15101.599 12622.4619 32102.6974 13379.9463 34388.1995 13168.2884 15800.6378 6729.7583 758045.7269 18146.8548 34384.0949 15610.7306 17879.1263 31643.9387 7783.0379 20304.8027 147886084 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8509.0401 5007.8654 51603.5771 28505.2326 10972.9475 4532.0482 9134.1768 3241.1615 9895.9487 8146.3249 16745.0597 280981.1427 15587.4102 8697.0605 18988.4476 16162.1429 16162.1429 4200.3616 30736.6129 9009.6869 14584.7446 8364.7541 91169.7205 4475.0858 6952.923 16781.0025 8051.1281 52158.9067 25084.0411 14182.8432 5896.8849 6483.4449 25332.2877 3288.9605 8499.5129 12659196 nifh Nitrogen Nitrogen fixation NA Treponema sp. ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 4431.0202 15309.3264 28624.4234 3703.166 2839.5441 5507.3442 10107.6393 2347.5797 2347.5797 3096.6457 18523.3057 6205.6116 2821.2307 7620.8623 4058.3322 9577.8286 6357.2865 7531.8733 6361.1262 7472.2923 379058324 amyA Carbon Cycling Carbon degradation Starch Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 20518.0944 5554.5769 7763.6815 9565.6052 10061.6271 7970.2335 8073.0194 15860.2839 14101.471 12144.7096 10843.54 287929.3641 16365.2954 8440.313 6741.0306 27041.0643 27041.0643 12224.6307 24849.6601 10071.0707 17246.4698 20999.5862 9409.0511 6525.7232 18684.4272 12649.4775 6924.4021 35274.0812 13918.879 14386.4718 5244.7629 16618.909 14511.5292 5496.2124 14736.4958 371926885 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8510.9911 28408.8697 7048.9022 45451.866 3045.3026 5394.5777 5313.498 5778.4689 5353.3539 7351.0213 91790.1247 6459.17 36001.4863 7672.5707 6037.0952 6037.0952 4523.0828 20657.5493 9232.6095 7842.0331 5032.713 5228.2903 3519.779 5313.3875 5531.2031 6613.6961 19944.1827 4814.1418 20184.7989 5780.9109 5482.5767 5229.1638 6888.8368 10560.8012 170139765 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 4427.2697 7318.507 103719.0909 7855.5278 3525.2103 2695.8098 98042.7523 3986.3132 4067.45 4067.45 9059.1809 5200.403 6106.2109 4906.2299 3657.1979 7253.6999 2612.3096 9597.5599 6355.404 11997.7862 7106.5745 10190.9962 2769.4702 5422.447 3016.4793 15462.3336 40264.2813 110592574 catb Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 8757.9368 7222.6354 4918.7319 15812.3034 7002.3025 121330.1657 6023.6272 8454.7695 7952.495 236333.1688 7013.1816 50929.2589 4950.1228 3478.7836 3478.7836 2807.339 12339.6308 7222.9266 8502.9264 8857.0736 28202.1799 7458.7337 3760.365 11941.0389 6977.8916 49827.0178 12021.2039 8202.6099 3244.1878 31149.0093 4813.3463 5522.7372 163854555 ophc Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 12633.8982 50662.8303 11914.5291 3729.1234 4777.0267 2430.6429 7630.6833 17269.9419 47352.3256 103600.1852 8967.9808 12275.865 11339.7161 49821.501 49821.501 13177.9931 44462.6833 12126.3836 25143.0941 17265.1207 11019.8291 6126.1256 14022.5158 31964.7869 12525.3461 32447.0726 26022.7911 20277.5081 31881.5532 28033.073 91404.0956 16332.849 9052.2025 189193891 pchcf Organic Remediation Aromatics BTEX and related aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 8795.1051 7997.8705 8597.8711 8459.7527 3661.6161 6302.2036 4457.379 4510.7923 143910.4225 6854.9654 5617.9133 4271.92 3622.9811 3622.9811 14739.9511 8794.0704 3691.074 5995.974 4909.2561 29416.602 4520.1879 5882.4253 18328.5429 12812.3554 11480.9159 14703.9768 4867.1274 6067.6813 3217.6874 7369.1415 330819973 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 67332.8964 15433.6536 6205.4049 11056.8293 20569.3799 18379.9875 7247.9738 11397.7547 27836.8335 17065.3158 258932.8455 18456.0513 17848.143 64865.7588 21403.4841 21403.4841 15959.009 26587.4633 18040.6868 15869.217 21836.2709 43519.6406 28947.0382 14545.942 16440.8082 26355.2669 71720.6727 12421.7434 32837.7931 8835.6525 31479.2015 26308.4755 13986.2698 245089.2924 187477368 tktA Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 5934.8079 12585.4421 3880.9961 5734.2894 7264.4224 4073.3782 16920.4206 6099.5057 6099.5057 3858.7854 5220.6484 3103.4959 2789.1121 4948.1825 3151.1139 3911.1089 5231.0258 34102804 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 10456.411 6671.1179 9890.8987 7462.7045 5148.2387 8628.6556 2138.2114 6592.547 9166.177 7495.8933 222619.8806 7662.1943 9730.7471 11432.3108 9151.8897 9151.8897 5662.7092 17840.0682 19342.911 6331.0023 7351.6761 67841.0457 4459.8173 14122.2734 9923.2273 4109.5445 13944.1058 6331.7552 15179.7918 10071.296 6204.9497 6638.5174 3897.6282 10492.1881 238718416 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 10048.303 6308.0402 12206.4717 7486.0799 3969.2804 6138.3715 9927.9173 4819.0645 18430.8644 7037.6314 162527.0325 8412.7116 13005.9847 8669.5253 30000.0619 30000.0619 6247.4913 14163.2711 13232.7852 7749.8474 11963.2975 5327.0501 5155.6295 5741.6517 14861.1527 28275.2894 28312.5276 12114.9477 13098.6085 6738.3098 6615.7097 9851.9581 5602.1013 12105.5181 378812342 terc Metal Homeostasis Tellurium Detoxification Mycobacterium intracellulare MOTT-64 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 28699.8971 32191.1969 43398.4927 95213.2713 26100.2069 50859.4615 21693.1074 28872.3151 17748.2429 35748.8207 17848.2458 486067.8059 31424.6525 37021.2276 60248.8801 22390.0265 22390.0265 22501.657 32666.8616 28756.7742 32458.9919 32777.3652 34832.2345 22108.9963 15555.6352 87930.1253 15653.0373 72258.0108 59047.066 43315.3433 26316.5934 31747.6563 20147.5153 14347.364 33081.2845 319415384 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 52762.6209 38370.6219 17748.3487 24676.8019 9930.8656 49482.8878 9878.8012 18976.7167 8558.1391 27799.9101 22342.9341 21856.5813 453547.9824 30048.6433 44981.6429 18367.5665 23541.6289 23541.6289 19868.5537 19725.2907 22213.6757 42336.6846 21179.8404 39140.0242 11630.9109 22862.781 22569.758 10093.8415 19525.2081 30891.2462 21369.7221 11097.0824 13394.2755 17132.4441 13756.9123 25458.9801 117928091 nitrilase Organic Remediation Aromatics Other aromatics Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 101812.4434 10682.1383 21859.6533 375366.3783 13694.4518 4213.8897 7641.3781 5582.6076 26914.858 11855.3229 304626.5015 48797.7196 33047.854 11220.4291 26791.3137 26791.3137 20110.9995 30248.1585 14027.4414 11781.7692 73002.179 10889.755 26123.9061 16164.2684 12346.5254 21674.3653 157672.7439 14737.2978 11754.6395 15204.5893 18852.5422 16293.6753 18324.9622 14840.504 353209659 cysJ Sulfur Reduction NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 21011.857 40676.4173 11845.2786 69076.2875 16868.1541 31673.5338 48025.2827 15196.235 20145.2629 30149.7407 31052.5968 881568.2761 66386.854 35817.8307 36278.288 23816.6602 23816.6602 21330.4692 48624.5579 31055.4143 109924.9649 58710.8278 63589.7337 10123.2501 20833.1 38877.662 18453.5979 79853.7494 42216.6098 75028.4262 17486.257 34773.3093 23016.4985 21967.4971 36385.3683 84685017 ben_bcla virulence NA NA Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 165906.4866 72155.4957 178797.4758 122048.0895 350379.1288 148871.4352 375706.1616 170352.4198 75273.7992 110086.8379 122317.5377 153833.9545 2510856.9672 169074.3981 128109.3353 186115.7117 121010.8604 121010.8604 74065.501 201165.317 99921.6729 255836.4907 488607.3505 245297.7992 97694.9366 83977.082 171041.607 99480.8746 318732.3893 184782.2086 361895.0627 109629.4922 139486.7116 140433.1207 70873.6405 240048.9734 261367998 cellobiase Carbon Cycling Carbon degradation Cellulose Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 7346.3059 484349.3176 25517.7539 13619.0493 4448.0716 7037.9043 5653.0626 2405.6758 4012.357 4213.4759 3821.6857 137737.4717 8023.4365 6988.4408 47945.0107 3754.099 3754.099 4499.1701 9136.4533 6178.2861 7027.5594 6258.9842 4225.5827 4135.4983 4449.3846 9885.2642 6422.6042 14728.4876 5969.052 10630.254 4592.3899 4373.4827 5289.7229 3039.0335 5396.7897 285026905 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 10911.7952 173158.3217 5141.2351 26602.2791 40178.0463 4390.1943 76818.3626 58748.8758 7336.1353 755213.7892 12376.8807 5612.5059 8439.1089 23913.744 23913.744 33402.311 9050.5869 10607.0917 4818.2944 13545.2075 15829.0115 2385.3017 8506.4207 14716.1224 6038.7752 63552.7208 17928.856 30604.4183 49167.7244 7149.6899 35887.169 11262.5378 17229.351 386817333 chitinase Carbon Cycling Carbon degradation Chitin Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 5301.8658 136121.4345 13641.8771 9264.9336 6119.1956 11172.9069 4661.9238 3789.9133 6663.0335 5986.103 4668.3545 187797.5457 9806.9643 12888.8914 6061.8266 5793.624 5793.624 5298.2695 11431.7777 8538.1931 9351.7417 7791.2217 6211.9658 3678.3274 5630.0692 10134.1134 3302.4208 20160.9579 4192.9863 11297.4048 3524.3486 5568.5659 9551.9205 12575.8985 8955.1889 302405158 ara Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 5971.4803 6890.243 9812.7473 7289.5154 7617.5665 2539.2072 8507.3261 22767.9527 4161.3908 122697.98 6821.7842 11608.5402 9427.0205 4805.64 4805.64 5368.3422 11418.877 7551.661 7553.9472 8959.0824 11073.1026 3413.3444 4589.7994 12603.6443 5501.1538 21437.4474 10079.5595 10841.8238 5941.0407 5520.5498 5270.815 4579.8029 7705.5979 341935574 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. raphani 756C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 6170.4586 19152.8857 34250.5902 4637.175 2103.1317 4365.4374 3716.5676 4433.9071 94642.6362 3970.4063 5264.5592 2343.7163 2343.7163 31152.3654 7053.0184 4673.954 11431.5096 3145.2146 4137.6042 15854.3638 3849.9508 11388.1381 9908.5405 8068.6196 5557.3351 4166.9725 9191.6155 15146.1021 12740.8531 317508584 amyA Carbon Cycling Carbon degradation Starch Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 14514.0831 14491.5944 7656.7311 35083.3589 5679.638 2426.684 10187.2525 9899.9751 7808.5156 139196.1198 11181.949 8817.1285 110240.7392 10084.075 10084.075 6152.4593 16484.801 13168.8566 9826.5459 15883.5328 8756.3018 7018.7876 15617.2208 22634.5258 9182.9451 19925.3941 7116.326 13755.7453 5744.05 8502.8628 19500.4108 7239.047 8890.4942 41325302 poba Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 5559.2487 5571.0308 45969.4471 4820.932 23448.3591 6042.9708 14222.1029 5228.2705 151710.2181 4406.3028 8769.3334 11085.7835 8169.962 8169.962 5548.0284 4365.9184 4936.5164 63916.7162 32160.0688 5952.5867 13650.0726 13220.2491 15653.3302 7677.1724 3812.2183 3859.7864 3622.4856 4972.096 315494536 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4225.2295 10005.2756 3324.6898 2922.5008 11217.2116 3637.0985 4004.14 6463.9074 7243.1074 4065.2751 4065.2751 3287.3287 7695.9045 5673.7008 4741.5876 2687.1876 3710.0152 6750.0299 3353.0444 5939.716 8493.2967 3507.8059 3816.2482 3598.7593 4401.1977 5580.9924 285859102 cyma Organic Remediation Aromatics Other aromatics Pseudomonas chlororaphis subsp. aureofaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 6700.4764 7152.4029 31284.5895 60838.0553 6007.9561 5811.5977 5618.2329 3287.4524 429423.0893 7187.9188 8769.1193 9128.4041 7928.536 7928.536 11887.3298 9452.4808 7516.7521 5267.3025 22020.1882 3772.2718 16707.433 10217.7285 18076.04 4827.7548 9866.4451 5836.2852 3216.9041 25028761 amyA Carbon Cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 29578.7928 5841.5901 26987.7931 28543.944 7857.9912 27866.6711 4978.2489 9582.5071 89960.2259 50723.3011 633293.4844 11879.9737 14388.7279 48590.6879 19825.4291 19825.4291 23762.2511 21313 13538.0359 15846.7341 23116.3349 6109.2207 9102.0365 27126.2354 19854.799 8893.6113 26250.628 37297.2304 33084.9692 9167.1728 11702.5181 16439.1415 20940.0527 26331.6911 257837595 ara Carbon Cycling Carbon degradation Hemicellulose Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 5369.8598 9708.4343 2101.2017 3143.9191 71608.1455 3705.819 5046.6412 1926.6079 2818.4705 2305.9709 332036996 glucoamylase Carbon Cycling Carbon degradation Starch Pseudoalteromonas haloplanktis ANT/505 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 5068.9648 17434.4657 8098.3298 90681.7199 17319.1525 5518.7437 5518.7437 5179.065 57924.4741 33982.1616 19280.2619 202458.2406 10396.9098 5944.5263 7435.2236 15108.5959 20559.9483 6100.9727 11700.2272 6642.7897 66457.7725 47983.0841 151302317 aps_apra Sulfur adenylylsulfate reductase NA sulfate-reducing bacterium DSM 14454 superkingdom:Bacteria; 9865.1142 7054.3888 13217.4279 4679.3461 10850.8868 10102.3086 10449.5516 14446.9629 8143.641 140076.5388 33608.999 14450.6677 8215.6962 8215.6962 6608.1014 12905.7562 14339.6218 11130.247 15585.8085 17292.2175 5110.785 6865.885 15636.2768 9204.1177 31898.5456 10670.6821 15559.0821 5637.8808 9328.3887 13788.3978 6499.248 8453.1526 365891038 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 91145.7469 26335.8228 47194.7267 104301.4337 567390.5253 233271.4512 47888.6064 160559.8754 50397.9703 118219.4533 102159.8882 89439.2063 2269229.4679 155905.9824 136352.5004 208256.2288 161455.4208 161455.4208 60530.6957 206653.9221 149821.9246 54711.3509 198136.0795 95974.2791 49094.4666 110332.7033 213981.8186 64803.0479 410527.7874 155452.9584 208203.6119 106969.7042 98792.8727 348684.2467 41918.1038 97819.3152 381167662 FBPase Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 32428.3949 9690.2671 10559.183 8259.0467 8495.7726 9883.4995 2009.4859 5381.296 9625.5972 21439.112 97888.1977 9207.2636 17202.7388 8153.6331 4903.6966 4903.6966 6026.7005 9204.9394 7570.7773 6261.8397 6299.1415 26890.0335 3814.0605 7044.6649 18871.4653 6117.7513 15001.9271 12492.6052 31806.1929 6457.3855 7966.9575 7431.4106 3745.1853 5973.7338 68264609 alkb Organic Remediation Other Hydrocarbons NA Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 32979.4674 606327.3832 22146.1546 7987.995 24052.9317 6991.6204 9553.9269 6490.2367 16751.2229 15995.4569 155467.5925 9351.3303 8611.952 10326.0676 4523.1209 4523.1209 6959.0269 11715.1739 8567.5215 53680.8996 7903.5362 27827.0744 4358.7859 5601.7145 13073.9312 5735.7388 20927.7617 16756.727 15819.3941 5686.5369 6834.9012 5450.0537 5490.4484 23703.265 222479925 amyA Carbon Cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 10519.0812 25265.5945 12982.669 13675.645 48105.9327 7754.2571 12541.9998 69175.6295 233584.8199 5664.5817 11808.6985 26161.3844 7413.4316 7413.4316 5421.8109 10519.4414 5746.5919 17858.1975 30574.7546 4941.9967 72147.6848 10314.317 8602.7164 12762.8059 17078.7403 7378.6312 10847.16 3051.1726 9582.5332 12724.0615 9338.5154 12591.908 295132628 arsc Metal Homeostasis Arsenic Detoxification Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 12202.4336 2660.3355 3025.7315 2385.5866 4495.6531 4789.2506 4219.3969 38192.3386 10632.2148 10632.2148 3856.8965 9389.0608 5223.5959 3788.7596 9053.5522 8306.6422 4444.629 5641.4291 6259.7215 2899.93 14708.3923 5938.9831 9734.3487 5070.0621 4421.7819 7426.8778 9129.8649 7294.9143 403512052 dehh Organic Remediation Chlorinated solvents NA Nocardiopsis alba ATCC BAA-2165 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis alba; 14638.9445 7352.0268 10598.5941 15535.6211 4962.2102 3240.5828 3240.5828 25103.5945 18759.2961 5943.5383 9034.3116 4735.2819 13612.9969 3774.9875 10881.7246 2279.155 4447.4915 4492.4699 2329.2388 55742.7698 157371777 ppx Phosphorus Polyphosphate degradation NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 10070.8344 4390.9776 92219.8386 3733.8708 6643.8326 4789.1034 2588.709 12210.46 9890.6314 4274.3399 6192.4876 2296.2943 39934450 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5044.4421 120486.4002 4528.5701 2113.881 3572.3928 13989.2014 3244.3611 106347.1928 5913.9825 7509.9565 4211.1876 4211.1876 3260.0671 10960.4726 9027.2656 6703.4792 8171.1672 5797.2415 4237.528 4551.9458 7176.4557 5755.1964 15386.2808 6703.3979 8861.4365 4466.465 3855.3343 6378.744 2169.5621 5894.1382 326415460 phdci Organic Remediation Aromatics Polycyclic aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 91739.867 15117.426 58896.7268 808132.6521 7816.0619 46917.1398 31650.2185 57381.875 28429.2699 45595.8063 33833.7304 603729.3148 39585.0236 43030.9866 52791.0292 33659.7083 33659.7083 73293.7374 47388.7944 32940.2763 29299.0549 71609.7204 51178.1537 35316.9333 18229.2625 295341.1632 39105.3755 505421.6792 161361.224 39946.6074 43768.3271 27122.5621 62728.0823 58364.9283 63592.1258 193088097 amyA Carbon Cycling Carbon degradation Starch Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 3719.3031 16424.4882 5503.0275 139003567 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 560259.8741 25650.1452 42877.5188 44003.9309 14198.0691 41379.2384 47145.8405 54041.2615 56771.3368 60984.0578 21981.1229 747187.8895 36328.1491 44946.9879 37395.6219 51150.8614 51150.8614 80539.6064 55864.2837 32831.4119 104639.6957 94924.9072 61980.0336 41174.8977 19575.6477 41712.5941 21314.1729 131512.6736 26569.8907 44922.7439 18712.3105 25483.5446 30315.5039 19553.8903 51391.089 146192973 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 44481.51745 19010.029 54849.37225 37328.76055 8971.7989 35839.81785 95154.5258 53261.3138 45328.2393 96841.3337 33446.88795 1373869.6472 60057.2868 51248.72125 57315.6604 50877.29705 50877.29705 83648.54755 60481.006 29552.94945 25643.4034 49698.2986 29204.4559 63618.1215 22159.51025 92354.0234 41772.20445 124010.04135 31811.451 50038.9866 29663.59595 65340.0327 50505.88615 80610.48745 80530.54845 389934965 atzb Organic Remediation Herbicides related compound NA Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 25268.3542 29483.4426 33256.736 24183.4768 22131.6533 17914.9581 21584.0376 21986.4592 17940.9481 33758.3567 19106.6602 56829.2096 271526.3774 35514.9248 25398.9558 52843.2061 19850.7579 19850.7579 12076.6735 21498.071 24457.4987 28957.3701 34499.5332 28769.8138 19007.3056 15759.4365 21085.4467 14834.0106 57380.8485 33108.6541 32088.8014 13447.7663 26213.3964 21856.8209 14289.9951 20734.1983 169793422 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7012.4554 7695.8985 7296.2063 8926.9205 6370.665 6179.0889 9238.5741 6524.8732 161072.6558 9135.3591 9250.6815 5659.1993 5659.1993 6243.1725 13735.142 8319.2479 6712.2462 8506.5502 15649.6462 5985.3016 4487.0839 10612.8626 11568.6085 14224.6313 11247.8124 6739.8221 19207.1819 6528.6901 6098.8274 14438.2111 221234290 phytase Phosphorus Phytic acid hydrolysis NA Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 549852.8647 12511.7348 19756.2449 63230.8808 12568.7588 454069.6392 12422.7947 18518.8049 751800.9086 42528.8257 1709872.4211 52224.2067 32397.3307 80931.4442 59719.8774 59719.8774 464126.7331 89442.5851 25090.691 102611.4957 27868.3985 27149.2195 27044.6269 22228.4108 45283.5737 25700.8261 70666.8446 38987.8445 58005.453 16425.6696 95200.2258 22932.0163 388202.4229 23828.8026 409439029 catb Organic Remediation Aromatics BTEX and related aromatics Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 13081.5673 16124.6877 27815.3489 12341.9986 44284.0914 21989.3696 9544.1834 9428.5061 250767.2119 12748.1488 10674.4735 33026.2582 19413.1395 19413.1395 6922.9969 130516.1554 10150.4242 104666.6577 12646.1053 21638.5405 7761.281 19470.2778 39693.4302 41764.77 36602.7328 18353.7042 403160.5911 31674.3623 13564.2239 22033.408 10822.9466 19010.4259 187921394 pcag Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8942.7965 20854.146 5032.8944 21692.1454 3648.4651 5487.4479 17617.6165 9389.2159 91099.3409 5248.679 6555.3055 5017.6543 15083.2235 15083.2235 14952.6778 11766.6168 6153.561 339751.8808 17354.6173 6423.6748 2965.363 5964.3876 38166.6681 7275.2336 29703.0276 7827.7414 16678.5456 5915.5436 5527.9077 5937.2935 19704.655 5301.7774 359732057 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 4562.8495 16252.6725 16907.6684 5134.3929 111266.9371 2838.8835 78896.1845 4228.6577 3943.7084 3951.9933 3951.9933 6475.1775 10847.6659 4234.2408 8701.2487 6523.6069 3410.1015 7177.2565 3542.7866 13062.6157 5172.7475 7813.7426 4772.7013 5047.3139 4189.4452 3159.3694 10020.8706 3320413 cellobiase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 14850.2866 5503.29535 2244.5419 3548.1319 4697.446 6665.7298 103091.8963 3209.047 4897.2285 4147.0966 8854.9721 3571.4423 5431.668 189342060 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 11703.5188 13394.5938 13360.7643 3976.5426 8942.4544 7148.3548 7358.5774 44941.8295 7734.2879 139627.7788 23771.3158 8848.539 8421.2266 16312.7615 16312.7615 5479.5802 22553.6801 10482.1748 15136.6886 12004.778 17303.6467 8040.6008 7458.0422 12272.1186 6336.953 18650.8427 12555.952 20240.7605 6232.251 8600.264 9165.4139 9890.4223 23018.2971 219861431 RgaE Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 5326.59755 4040.6851 6609.09115 6218.37795 4757.20995 4707.75225 3794.96525 6526.5281 4468.6196 4830.6753 5406.6379 2408.36375 8882.8576 5204.27555 1971.7212 2983.1104 260645908 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 28709.7992 19405.5146 18456.8702 7819.4265 29087.3583 34268.7161 17598.2777 9299.8603 26011.3095 58834.5366 27047.8447 1035659.2776 28923.7476 33831.119 47030.6855 24425.6045 24425.6045 14750.2486 24055.2337 14765.7278 55693.6017 53784.7315 29528.6019 167846.8325 17483.4374 32360.0012 19443.6617 52203.5184 23394.8014 59419.5582 53022.078 17514.0871 26861.6029 24278.4978 22142.7989 75265436 nirs Nitrogen Denitrification NA bacterium D1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 4516.7502 5845.456 2226.0869 3194.6054 120658.2765 11935.1108 2581.8447 2581.8447 4376.8524 6843.7021 7243.6581 5981.9031 6335.3461 3793.0688 6546.5489 2432.2947 15220.886 60044.9281 6931.8214 3675.645 6740.7573 3930.038 403529208 cmci Organic Remediation Aromatics Other aromatics Arthrobacter sp. Rue61a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3689.0292 8937.6769 29157.4526 2343.4517 4652.6366 4350.2072 6590.0935 3770.5383 2311.9623 4998.0428 10482.846 10743.1009 5904.2411 2509.154 2549.1947 3546.0391 3614.935 32685.6516 296092782 rgl Carbon Cycling Carbon degradation Pectin Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 7791.0103 22762.5391 11563.1674 903998.7884 7856.041 7002.5426 10477.1886 3504.8004 8944.0669 12920.1453 57354.7054 144062.6478 8958.2507 10144.7703 17631.0768 12067.4523 12067.4523 7454.6155 20791.9501 7466.897 8960.2218 18037.7116 6300.4039 6961.1388 6261.8399 10115.0648 10217.1462 19765.9588 6829.742 16862.6189 8494.3085 7558.1801 9578.8603 7623.282 10514.0108 365853557 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 86937.5542 112462479 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13460.2353 11177.6171 12667.2892 8352.6961 13406.6515 12897.3865 26063.1577 17520.8275 15716.1458 5656.0491 205029.3754 18860.4001 22072.4704 8568.2163 5969.6673 5969.6673 8829.2716 23023.1547 14495.3626 18238.5825 19638.1472 21305.4139 10347.6819 22839.7799 19409.1701 7714.4022 30222.5355 16327.514 24694.0084 8379.7854 11281.7063 10535.3329 9500.3931 19646.4954 238884297 catb Organic Remediation Aromatics BTEX and related aromatics Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 9991.4247 5466.1179 2452.3834 2906.5758 5466.702 2863.539 7583.2894 3905.2103 7447.0987 4406.5593 7823.7741 7823.7741 3489.8815 9782.1568 5868.7054 7840.9958 6998.5093 11660.8445 2667.3791 4279.76 7902.2146 5071.2775 16057.604 12039.9665 10406.2401 3120.669 7404.8071 4229.085 4212.7494 10432.1878 255935839 cutinase Carbon Cycling Carbon degradation Cutin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5683.0543 5969.1868 4622.4723 10575.9362 5457.4412 4520.8326 126207.5698 6788.7033 9168.9701 2546.1368 3142.2954 8936.7526 7903.4906 97884.4176 4413.8595 11417.6399 6851.3367 10412.0206 12466.2458 6980.9856 4502.9355 3713.0805 7931.2805 2417.2988 12425.6879 11667.2248 7982.5886 2732.1772 10811.2495 6596.8041 4340.0743 12557.9665 413961477 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 18381.9961 10243.2535 23355.1654 11150.6213 18849.6971 7442.9031 21359.6077 14134.6712 197794.6693 12301.7306 14074.5476 7419.3903 12210.6524 12210.6524 7571.01 22762.4758 8645.5787 13118.6899 16603.2472 12279.5409 7216.1259 8673.3969 14219.7973 12760.6362 33682.5083 16558.8639 28987.7699 39177.5126 13384.9377 16626.0373 8724.4784 10334.1032 83950360 pgk Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 12022.2957 6830.4836 19538.1975 6789.5804 4403.1214 5631.3713 4511.8558 14918.8463 11430.8174 228323.0687 5483.2781 7917.4581 5660.7284 4180.0256 4180.0256 7751.353 12266.2766 9616.6609 1781864.9279 10272.0945 5446.3567 2778.5908 3904.3641 14122.8807 4020.7516 16814.2071 11493.3076 10697.9204 5659.3056 6392.0443 6295.1378 6902.1105 7519.4696 379044746 arsc Metal Homeostasis Arsenic Detoxification Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 27372.826 20868.5336 9913.5724 7549.9876 3087.6674 7925.32 13681.8696 8434.2009 20118.6701 6083.6173 79803.5015 15205.9991 9272.6149 18918.3468 9357.9075 9357.9075 8998.2817 16342.9004 8462.2793 44598.4707 14644.3128 14521.0916 11870.9039 5756.8115 12013.8016 13153.7611 19780.8971 8842.7231 13205.0696 7524.1094 6254.8024 12914.879 4565.9019 68379.2423 144898944 dsra Sulfur sulfite reduction NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 19678.7729 6900.3365 10894.4399 6094.9349 238900.3152 29929.7163 20479.2382 42487.7638 49034.9689 173995.5842 449845.1023 17537.2652 25021.1071 12499.4267 12499.4267 9327.9979 45715.3669 14387.9039 54070.6165 39588.7172 23449.4833 14957.4493 17831.3811 13549.4851 21693.2129 58196.3013 31855.4165 31914.3193 6996.4047 29246.3464 27091.3438 20513.9538 87604.1987 297203175 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 5356.5717 6699.1737 7708.3172 2401.4205 4691.6937 7033.7289 40774.2516 129467.0964 13589.1098 6366.9345 6366.9345 3485.8916 4908.4658 70228.4571 6479.2464 2628.079 5723.8087 15108.9974 37517.9906 18539.3744 6658.5197 4145.1779 24311.8141 6462.9119 7389.052 305127997 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 15191.3768 13557.944 12173.9486 36705.7756 16322.2986 6103.8469 5492.5725 10706.7848 3679.8989 20331.9955 12844.9381 13316.8195 304263.7752 16223.3455 12575.6224 13080.8606 7365.5468 7365.5468 11294.7953 29638.4843 16575.3808 19793.065 21207.4202 20997.7749 17837.7143 8430.2147 25431.6943 6026.2245 64514.7858 11414.6516 20499.6148 9085.3267 13359.053 13140.0068 11715.1886 22936.4127 300788751 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 11312.283 4101.428 6498.0525 3849.1162 31982.4007 3123.3922 18563.4561 7650.2033 19527.6777 113325.7532 10095.5043 17423.6568 10650.0799 7556.7397 7556.7397 4179.2111 37414.6068 6831.3946 4325.9573 9935.471 6420.9726 5657.2016 27017.078 12090.9164 7525.4671 10171.2187 11875.6849 5576.9423 12512.0659 13358.892 5588.878 8192.8296 4883502 exoglucanase Carbon Cycling Carbon degradation Cellulose Humicola grisea var. thermoidea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Humicola;species:Humicola grisea; 67942.9008 21851.5084 1023814.518 182064.9809 37799.689 12257.6657 41170.533 19295.4523 9635.8745 21850.4025 40201.3614 39072.6006 1347593.8347 34271.5859 35234.0647 18961.0706 32893.9124 32893.9124 23468.9055 51407.2432 35737.3406 38950.9988 191267.9299 31150.0929 16748.953 32010.6825 32934.5233 21840.2184 205860.141 35386.1222 42763.154 15898.4951 35721.8896 30537.7888 21623.3747 42519.2216 334103263 camdcab Carbon Cycling Carbon degradation Camphor Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 6703.2202 5878.9881 8309.8715 3154.6445 4422.0227 7374.2034 5112.9242 6014.8837 3019.6878 98211.8773 5994.5732 7145.7409 2853.4027 2853.4027 4408.104 7472.2238 6747.9976 3923.9608 4660.0956 5939.8831 3180.8158 8710.2707 3584.0136 24359.9708 5042.3704 22792.832 3721.5293 3048.0381 5386.1811 2441.3014 7400.933 153010732 xyla Carbon Cycling Carbon degradation Hemicellulose Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 4680.2327 7762.642 3591.1023 3027.385 4684.6558 3909.2721 5542.4526 3248.8453 3248.8453 6755.4286 6756.2358 5046.5759 7148.9297 2987.7002 2937.3346 6265.0423 2703.1058 9659.9818 6757.2255 5580.1361 2384.7608 3980.3982 8243.2858 145231168 xylanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 4848.0388 408709.1436 7356.7262 3148.025 4434.1584 3735.3756 4445.4941 19521.7611 4984.8998 2070.7672 2070.7672 7918.0302 5542.2052 7794.4264 5161.5407 8623.9902 21782.8318 17825.3567 11975.4611 5488.1276 5369.1184 3869.2245 5943.8596 5593.3318 86135998 cmci Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9139.1358 6937.3747 4699.0017 16267.8004 134903.6909 7846.9913 7502.4595 10071.4309 11271.8056 11271.8056 3467.8392 9369.7405 23477.9869 5856.1618 15478.2423 2489.0385 4807.475 3358.7381 26335.8771 6808.6748 6436.5056 3872.7508 6446.7516 45896.7019 5971.9204 340764447 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 21533.9269 18007.046 33606.5904 34315.7914 11667.7235 483718.6959 14923.0435 12444.8981 16728.9637 17379.5483 10448.5046 454939.0636 22849.4099 21159.2862 19910.5603 20955.0031 20955.0031 11881.8299 25451.9338 20591.4241 26709.3235 17890.0577 21855.7695 14879.7112 20933.3931 26990.436 12714.5152 44925.7425 30775.9408 32232.2595 12366.7398 19634.2554 16829.4123 9129.5196 30647.7334 354725653 endoglucanase Carbon Cycling Carbon degradation Cellulose Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 10633.292 13076.119 14790.9295 7820.7708 5287.8376 27063.6997 5762.7948 9905.1226 8999.7691 5710.0175 218276.4357 14618.8378 11075.5827 8126.333 5512.2855 5512.2855 6646.108 16398.7698 19120.5168 12096.361 10706.9119 19213.8014 5941.5659 5987.1553 11238.8611 7657.0171 18726.0509 5385.424 12885.9595 7054.1703 7168.0847 7425.7429 4952.6649 11882.0644 291071687 one_ring_23diox Organic Remediation Aromatics Other aromatics Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 21745.0022 32040.3379 19347.1073 14693.143 27236.0115 13499.2191 8225.3224 10348.4562 15800.143 202528.6471 21990.252 17845.8651 31329.8427 13904.0856 13904.0856 6991.1161 34189.4398 9838.938 8558.2432 68551.1929 17612.4234 59210.9448 41040.126 20299.058 13519.2974 90392.3576 45963.6141 25782.6137 11264.099 11502.0184 14132.9595 31592.6286 8400.2295 253778186 amyA Carbon Cycling Carbon degradation Starch Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 5561.9043 6324.6155 6401.7166 6976.0293 10429.2173 18386.7304 238836935 pmoa Carbon Cycling Methane Methane oxidation uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4768.4103 6514.934 8104.7866 2599.5708 4424.82 2932.4712 4244.0766 88186.6902 5352.2002 2862.6105 2862.6105 3740.9343 9341.4526 4391.1553 4469.969 4642.7485 2363.6476 5864.3466 9885.1824 6015.9079 6530.0288 3525.0398 3381.0529 4532.5926 10654.0245 7110.4969 242277959 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 206046.0554 34163.4629 395894.1669 94421.7945 197877.3718 33494.2216 118362.7295 224659.4564 117592.3294 96420.0576 72883.1007 93555.2235 1534230.5154 104459.3818 129827.9848 220596.1452 224451.7186 224451.7186 99359.5617 131386.2014 67577.8839 83283.5814 171026.9448 99397.0348 84289.9993 90194.8137 162729.3817 103390.1446 451857.3165 111316.4456 152312.3701 91008.4489 84167.9113 117956.2018 68715.185 161651.5058 109290330 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13388.2621 3268.906 8123.5544 4314.7899 3617.9369 108976.0852 4466.8212 8589.8508 3079.2236 53945.8124 7104.2586 4990.6486 2660.6997 3294.883 8818.5509 3651.3858 104065.382 3960.9425 8339.3406 4827.4824 4708.0684 12346.8754 5082.4837 393760576 nosz Nitrogen Denitrification NA Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 156057.4853 821784.0162 41668.3633 21217.0155 8400.7456 11693.9453 4505.9251 22192.0381 13599.5823 28265.3288 437990.7255 39192.2933 33100.1052 18046.5352 15977.1622 15977.1622 12910.7487 28470.2514 30806.5728 109018.4171 23024.9766 111302.2366 35128.5733 16890.76 34088.0305 9117.8046 72637.3203 53906.3299 69611.3043 8187.8898 14322.241 20451.3239 10127.1928 86977.2937 317018235 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 81608.9315 269796019 amyA Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 7296.5038 7568.5094 2166.6756 2915.6561 3278.6112 5054.9129 12964.7618 63572.3559 1942.9216 1942.9216 6926.158 4087.6718 3453.3099 4856.6185 4515.0017 4212.3541 2956.4862 8955.6666 8024.9532 3146.1031 2866.4087 2182.1434 4348.8343 353208402 tehb Metal Homeostasis Tellurium Detoxification Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 8245.0629 7491.8187 5261.0748 7309.9361 6864.4473 13801.8369 22133.2834 11969.3561 13141.023 8128.2694 103238.8286 8510.2101 8655.3701 7218.7433 54512.6487 54512.6487 5908.8741 13405.7466 7411.2112 9387.3744 19139.0743 11480.8979 3439.6083 8631.5191 12469.5486 11639.6258 36401.4878 9716.0177 12847.2026 3275.0814 10215.4023 8773.223 6563.1029 20488.1989 294338583 FBPase Carbon Cycling Carbon fixation Calvin cycle Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 5075.3662 4504.5328 9345.3689 3766.0399 26479.2093 3572.6936 7253.1259 10360.828 5144.7045 88120.198 26763.1876 12499.1513 45476.1659 45476.1659 4423.8054 12087.0396 13807.6229 6189.0626 8301.0041 8721.6595 3233.9401 4506.4412 15302.8404 3621.6452 25041.7827 9496.6395 10391.2264 4244.1231 8200.6383 6822.9172 8481.2596 12680.9841 269793958 xyla Carbon Cycling Carbon degradation Hemicellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 81362.8522 75634.2271 13424.5481 41436.3808 13332.7593 59541.2962 45260.3316 24268.1551 21677.0484 41892.1168 46853.3161 612812.2447 68723.5284 35865.6941 82616.7647 32455.7672 32455.7672 24062.3162 68401.5929 36956.0075 69891.6051 55622.7728 32309.07 32754.273 76018.9654 40472.6658 50031.6942 165739.9703 44899.8566 48294.9294 14953.7907 57784.6355 50393.5754 22410.2544 40983.2237 116619348 terc Metal Homeostasis Tellurium Detoxification Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 5034.665 16150.7334 6072.8358 2612.0672 5725.7731 63967.0064 16962.493 11361.6535 4900.9344 2799.284 2799.284 8760.4899 6334.5857 9822.4076 25379.0222 4197.9578 27426.3104 2764.1575 11624.4348 9834.1168 7271.3594 3622.4966 7424.9196 3037.3928 329903209 cysI Sulfur Other NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 10380.2375 15387.1538 5778.3885 2264.906 4025.6925 5424.5244 4769.7582 78692.2925 4144.7983 5128.3792 9868.4793 2788.7038 2788.7038 2840.3763 11327.8705 4163.4391 4107.6808 4594.5792 5249.8812 7057.2454 4874.9715 5573.1151 5378.462 7389.5283 8232.4383 9434.562 2810.892 4316.0685 3621.6779 2173.4792 14079.0755 307727622 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 63477.8263 36859.4981 139110.7206 55905.4094 13032.6857 32710.4899 28080.583 11334.6772 29914.4342 63732.7046 45130.0534 544897.0771 34376.2164 22098.8823 78234.7901 26566.367 26566.367 17390.9365 46844.2361 23688.5119 56460.2451 24167.5726 17910.1381 14328.9599 28142.9628 27495.9507 76988.534 59045.0734 20673.8689 66968.289 34968.1546 43928.9333 76293.9202 24447.3276 57964.1823 319794670 TIM Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4433.3555 7775.5998 2692.4604 6324.2195 3203.837 3469.6735 4065.7778 2440.7449 63320.1224 6879.566 4421.1434 1961.6566 1961.6566 3594.2074 6498.6313 3774.6922 4685.0949 9971.0106 3895.9769 3130.187 2637.0348 6592.7914 6740.6883 12421.6124 5621.4304 5045.1559 5856.8016 28318.4233 3744.9563 6716.1855 89047094 ara Carbon Cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 30680.1676 34667.09 17504.9547 14630.2023 40737.2506 14729.8256 8903.4671 26279.1555 34258.0391 194653.9492 128607.5551 13111.2366 41373.6447 29780.9542 29780.9542 8243.1744 33306.1247 12753.2359 98181.6476 37594.8753 16993.3149 21843.5828 18998.8339 18676.1893 36758.2855 67442.8302 39290.7267 31484.6393 16279.6859 40385.7889 26025.1684 23813.5613 27279.8764 345124814 PRK Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 27633.4849 18287.6565 19856.8362 15790.9851 20453.6292 17311.5075 52311.0259 21383.3677 18738.9656 24514.4309 14336.5816 548654.6745 26296.9317 31082.8868 18269.2935 26629.8594 26629.8594 19835.1604 31563.4126 27418.2397 34538.4739 38448.2974 46887.057 15896.5439 21112.8069 29549.2911 37661.797 68771.7123 33640.3649 39997.3018 13206.5546 21898.6021 23231.2618 14786.9547 27964.8644 124389565 rubisco Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodosinus mongolicum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodosinus; 11324.9174 7491.9501 14556.1188 18742.6944 6914.3352 6017.1074 3605.8695 7289.741 7514.7055 4022.7884 159001.6963 9866.799 8251.3385 3256.4138 3256.4138 6601.0847 18307.7396 15187.6435 9113.5983 10181.9627 14864.969 5147.5539 6652.6087 13812.2103 4558.4004 19794.4018 11832.7 14418.4258 5603.6127 9011.6176 6129.4224 5121.7013 13360.8803 254488468 cysI Sulfur Other NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9762.8776 39810.0535 10161.5487 11857.7684 9568.2132 4218.8718 8469.8124 7692.0872 5852.9449 6915.3929 150628.6486 12492.6562 10848.6442 6537.3463 5239.4984 5239.4984 6677.0492 9799.3757 8639.8212 8957.0152 7441.1615 6167.5791 4388.628 37225.946 13491.3413 7161.2176 22717.9749 5993.7534 12204.7175 5142.701 8047.2623 10251.1121 4878.0156 12453.9929 330990561 cysJ Sulfur Reduction NA Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 6573.8902 11888.936 9456.87 5127.1067 13644.3564 16453.8225 8837.9848 346469.1305 5065.6591 8992.5478 10833.7006 15843.559 15843.559 4143.1021 7093.7393 4517.9497 230961.3171 7105.1054 7004.3711 3548.6099 5724.929 8730.5572 4455.3481 10371.2742 10267.6131 8967.9995 2696.4561 7505.8129 9250.527 2880.4316 60615686 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter sp. B-5-MG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 17570.9114 5596.1417 4998.6218 7215.6031 22981.0897 13174.3401 12001.8501 18356.9545 36080.0786 10463.2731 198621.1634 12266.9363 24915.0167 25976.6849 38246.8491 38246.8491 9426.8718 26803.2992 20637.9735 44084.7288 33918.5682 13715.4783 8203.4444 20388.4709 18548.9279 12629.4622 84309.547 20707.4049 39670.343 8625.8329 16172.129 28781.6713 39429.2145 29845.8577 380681834 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 9042.7096 9023.1678 11564.2905 4446.1765 3944.3161 5170.9515 6963.8964 7771.1197 6294.3932 212966.5269 5835.8099 7806.0987 3387.9326 3387.9326 6206.8654 17006.0039 11099.8422 119632.2957 9276.7793 12577.0899 8479.1491 4365.0694 11343.9731 4481.5852 14914.4354 7742.0354 10074.2115 3390.2325 4864.1374 6392.9648 8508.0039 11706.9788 383281740 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 4299.5235 21596.1775 7411.8095 13965.2338 5668.0153 2036.6606 2036.6606 5720.9497 5413.2421 1962.3809 8681.4619 105520.7783 78169471 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5513.7318 4666.7258 3902.2466 30226.2605 3797.3037 94117.3752 6897.0967 9742.6696 20875.0555 5116.9988 5116.9988 7345.371 2245.8103 14713.762 13099.6039 7025.6048 10136.0659 5027.1283 7099.6303 1723.5558 3671.4783 4386.7436 10914.6403 292656015 pme Carbon Cycling Carbon degradation Pectin Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 14010.531 88856.8381 7483.312 14883.7653 10047.6118 6321.4729 7987.5457 4979.2603 11687.1638 12909.3739 11475.8216 310896.4924 11093.5086 14356.0453 5551.3301 15022.7584 15022.7584 9231.9385 22341.8632 8628.1735 13657.7701 48864.5448 10656.9605 6003.6672 17604.7603 11834.6491 17210.4106 28546.1635 10915.9513 12723.8696 18367.9833 13678.4655 11510.1574 6685.335 15851.2652 403725366 badh Organic Remediation Aromatics Other aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 104455.9386 61046.4856 34249.1925 26661.1166 13345.3849 15357.3937 57389.0808 24597.2766 33072.0632 62121.0144 102666.0346 607752.1298 38124.8713 71932.2567 74498.8812 62732.6116 62732.6116 31836.2418 90408.2094 81501.0439 73684.7042 72201.2861 57479.4556 27739.9358 45317.7868 47456.6979 38147.3586 147879.683 82692.7043 106802.0829 29520.8274 35538.6117 106365.1893 31333.7597 68980.1453 320150339 amyA Carbon Cycling Carbon degradation Starch Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 26693.4783 32147.7199 15061.5951 25112.1543 8092.62 19668.354 6006.2447 5915.3151 4984.2113 6802.3693 6468.2237 199945.9193 9328.0343 10402.2682 17539.931 15656.5343 15656.5343 4999.7662 11055.1956 6760.0237 9744.9413 24752.5445 8078.5683 4011.1682 6518.5103 12896.1267 8948.5822 14834.137 13531.0525 33048.3416 5504.8763 7913.6188 6295.3947 4132.4614 5071.661 297203588 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 21037.7452 11881.7272 12981.467 9061.3263 8049.9972 8346.343 12629.317 10218.0401 16679.2879 19945.1577 10061.135 360451.6815 224396.5054 22692.6151 19175.917 10162.4941 10162.4941 12586.306 17354.6444 9853.894 16699.5798 52223.3037 21479.3768 10203.9102 7688.4859 16322.5845 8156.416 26176.2058 6300.6046 26532.7345 6553.2781 10567.7111 12697.5312 23148.762 35278.4903 302855502 mannanase Carbon Cycling Carbon degradation Hemicellulose Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 134686.172 46171.6282 5100.3911 10577.7989 85358.9222 6555.2102 3750.1733 91929.5087 87887.9859 186916.9405 2723.0013 13679.6742 90021.9537 21210.0269 4210.688 46618.2734 1927.8746 32677.3428 226939539 cysI Sulfur Other NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 6877.1266 11594.2832 4950.2511 39812.3742 7261.3465 7384.8571 42842.2872 4896.201 60274.1298 9674.91 112872.5561 174882.3529 28456.0413 18110.5282 33249.5171 17774.7295 17774.7295 5937.3052 15184.8553 31027.6073 6064.5434 9047.5625 372875.7472 3841.3707 12073.9601 31617.3992 37776.4901 49158.0296 23890.4481 19525.1857 7948.0113 20795.2373 15441.4755 6936.0531 11886.5032 118424397 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4097.5966 9112.5827 3287.1941 2268.7405 52976.4951 4162.2429 11212.4944 3144.7033 2665.5142 31559.2559 5131.4246 229325299 Sir Sulfur sulfite reduction NA Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 21139.9214 6654.1836 6765.8909 13695.1299 20921.2586 12100.6235 24900.8954 23147.9214 20906.6606 15632.2664 236657.4236 27199.2354 27880.5609 29533.1357 237610.0903 237610.0903 8947.4249 25689.2672 16341.7963 12811.8229 14393.4106 16225.4952 6163.0301 8549.2247 10811.5806 14266.4731 39961.3563 42824.5552 26423.6648 9484.5919 20266.3478 12676.7991 15762.7728 32730.1793 336099758 tktA Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 68544.6875 11598.0702 92752.232 50608.641 49001.1558 26081.5404 132541.4358 33733.0982 124373.0761 33898.4923 127784.7062 65585.3681 27249.7977 42429.2246 45012.7252 43529.9528 54821.4164 54821.4164 31131.8501 67880.7957 35450.4505 227744.5796 128992.4946 57580.6473 38822.648 34978.2746 68739.7813 32639.4552 154294.3258 103486.1552 114084.2675 41023.0528 40607.8509 52031.7974 33482.0467 221476.4353 167571826 arsc Metal Homeostasis Arsenic Detoxification Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 4357.9742 3341.507 5814.1901 7973.8793 3679.2587 17167.7531 12547.0644 7261.2445 6482.7025 3397.6634 3354.4334 31801.7087 168199246 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 216545.2638 23606.1518 353666.2994 17774.2329 33792.2665 16484.324 55552.4349 85329.1856 43599.8253 145844.6315 31038.3131 448274.9143 60274.4672 86720.6445 100231.7365 152409.9805 152409.9805 15194.0774 67901.2093 38088.7797 188595.2474 65091.1362 24255.0408 38456.4637 41653.0637 24494.8127 39275.3506 87762.8894 27706.0596 82461.1082 32598.1926 69722.042 51410.3342 56598.9915 29340.8795 219939001 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5160.034 11918.3884 2469.3393 2999.5108 4199.6364 3849.7534 8734.1389 3186.7691 76722.0847 6263.9982 12167.8612 3649.5808 10277.202 7049.0963 4879.496 7662.902 17958.4908 4405.5738 6836.2286 4308.3873 17933.5026 10692.7459 8920.2479 40988.5087 5202.9554 8682.7157 2675.0655 350267168 pula Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii TU-B-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 4067.3807 5956.6248 19494.3636 3738.16045 4040.7793 4392.3869 50597.0135 4560.3073 3711.5227 6915.7419 7238.5435 5547.7589 4767.5454 2347.4628 3108.8544 10830.76855 2404.4128 13135.9755 4138.51925 6765.7248 2433.17195 3839.543 4546.9326 4057.8971 6030.95415 225042543 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 115487.6219 17082.9777 33928.5246 243606.7939 104376.1697 32741.0996 41866.2037 82935.7476 38891.3969 61187.7013 56321.0467 81288.9468 3828428.9259 99576.475 123569.8712 77093.8041 71050.4988 71050.4988 38254.9236 116638.9464 43327.4111 1504151.1463 96049.4828 52063.2929 47094.7188 46492.3573 60880.7045 94394.4966 124257.4542 82657.101 183843.2562 33592.6604 65112.1164 62918.9544 37167.4197 104335.7414 374724917 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured marine group II euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 10699.3245 36229.4522 3469.0839 6570.3973 13558.1216 7291.9425 20740.4121 5717.5697 5782.7527 21684.1615 23241.733 24829.8542 10747.8839 10747.8839 6464.3559 23456.0441 18636.1078 7195.8982 14570.25 10475.1263 9203.6451 10964.3783 15747.5911 12124.8323 39386.5656 13566.1228 16438.5349 8195.5561 19577.4851 49576.0913 5536.8719 8479.0361 340358548 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 32276.4826 17472.0397 19365.93235 19173.2827 12095.3156 13205.9074 15327.6655 21215.5833 30043.7503 368818.3762 22691.05015 21410.2365 29896.37625 12927.84015 42585.25245 15694.0876 81875.0124 33411.91025 12057.74415 20577.35185 13361.13625 538158 nitrate_reductase Nitrogen N Assimilation NA Phytophthora infestans superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 14404.4697 10741.1559 8575.8523 5298.4056 6542.4665 8914.7581 13086.0257 57007.9756 8212.4035 4208.8475 19266.9715 7314.1133 7314.1133 3817.7676 10996.3699 4678.2963 4098.3513 15412.5648 3636.9233 5879.5595 12229.4917 4303.914 27296.3803 12696.2357 9797.902 5127.2264 7428.9198 21532.9042 3208.8021 14833.6756 332663400 xylanase Carbon Cycling Carbon degradation Hemicellulose Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 91422.8013 13569.5869 24043.1825 62868.3235 67661.1409 15067.0348 38974.0009 34403.1154 38422.3391 32428.6681 73181.0394 29019.7096 865245.8297 36389.1824 43972.6043 40125.7143 38471.12 38471.12 25155.3045 55960.7542 33255.6162 68246.0384 71909.3452 75153.9804 23700.6173 37360.5819 56047.3841 21416.5207 112776.6893 69198.5095 47275.2976 23156.9856 23356.8533 29644.2096 19415.4538 55053.8603 120406735 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 15320.8517 160676.8174 83452.9172 7975.0002 10957.1412 6625.1303 9451.1129 18987.1793 19952.6634 164291.1934 15796.4104 17439.28 18927.1711 15629.7285 15629.7285 4712.7727 67996.1246 17543.8009 8339.5612 12043.4578 22159.4397 9640.8203 22815.4047 9184.471 13950.3247 30167.6706 23762.426 39805.8397 14118.5013 14152.4433 13889.5826 5959.5165 32635.1252 317018276 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 45426.8612 34723.8222 14396.2359 41625.3327 10492.7346 127745.226 98040.5175 59059.0669 38827.6631 42151.3736 42348.6781 683106.9701 89579.9542 53933.5161 82672.4806 45699.1693 45699.1693 106842.2081 78147.9815 26609.0679 96197.2154 147368.0938 78528.3911 66375.9279 61784.0001 44315.8256 68412.1175 142179.4838 71827.2437 67424.3606 49100.7932 55769.4883 73490.5744 56254.8319 69952.5881 294884093 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA4_4W superkingdom:Bacteria; 344440.989 14753.5439 223936.6724 141290.4601 123723.8873 18097.6287 138510.7902 201722.0128 50052.5372 114311.8187 307215.6093 175261.921 4611423.5394 144785.8639 189114.6585 113174.9715 270606.3533 270606.3533 61483.8933 133828.9318 73134.1778 70258.3953 105488.8107 118683.592 64509.1067 58152.0775 100177.9362 109654.7529 194258.5131 179062.1023 114005.3532 105388.0736 104176.0094 132883.8889 72843.8916 86918.6686 90423810 chnd Organic Remediation Other Hydrocarbons NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 25043.0329 17577.944 13501.9967 9070.6971 52262.726 8167.9295 15927.7023 11637.8261 20947.1298 10590.6541 560493.2333 14207.9892 22154.1861 21091.9762 19814.3466 19814.3466 18300.1326 25453.577 18255.244 23373.4069 51605.8353 26636.2429 8909.7457 11355.4457 18552.3013 17367.2858 38089.6284 22377.6122 26610.218 10413.8436 12010.9384 15636.0879 13821.0624 31006.234 333372931 arsc Metal Homeostasis Arsenic Detoxification Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 10229.544 13841.6357 7628.9862 44104.6646 8110.3648 3244.5475 7172.6247 5504.5158 5390.6436 8912.7951 6049.7234 130738.0678 9790.5312 12310.7848 16815.8923 14170.6147 14170.6147 11131.9744 15703.4732 10005.0695 13841.1078 20032.5752 27329.7032 10642.5176 9097.1519 14810.7345 7400.8824 63383.4352 13123.9887 12320.6107 5201.9247 7706.7304 8309.7523 4237.0828 20414.5414 14389189 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9137.3287 10631.3411 17958.4104 3017.1467 7983.9763 10698.6956 4110.9827 373120.778 12447.1386 10308.2101 7558.0375 4641.8875 4641.8875 5636.6381 17900.099 13922.5469 11328.98 22057.7626 18830.1263 4847.8115 5693.7996 12659.2751 7142.3134 36760.4121 15757.1947 6488.6943 8393.2128 7048.2454 6225.6625 33225.02 302474538 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 18262.0472 10766.9207 4384.1213 27022.1326 5057.0555 3254.717 19069.747 23070.0279 265605.6802 14224.1952 24608.5136 59115.7472 28190.9674 28190.9674 3722.7609 14229.2692 5630.0101 3521.4156 15158.671 113592.8573 8091.8655 40601.0045 54385.2419 11378.2005 17688.138 14167.8924 5187.9161 2964.0074 22351.9302 17432.9507 33243249 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19155.6086 11503.8149 12904.1378 29625.6422 15958.8131 26967.4806 40156.6707 9911.918 15942.6943 14198.4321 47732.9872 350024.5691 26546.559 20022.3558 10816.5809 14242.2101 14242.2101 11446.2724 40821.956 19401.9641 56956.5248 139019.2486 14633.4375 7327.5539 9189.6939 26593.7689 10211.0952 47804.66 17647.2846 21561.0621 12311.8833 13737.2075 18678.8544 17984.9617 22111.1194 86554817 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6413.1814 11385.7072 28793.0923 3338.6656 46545.1622 14346.9511 12221.7271 14355.1714 18363.7131 182230.3362 11893.4366 10012.9413 33890.0879 9532.8613 9532.8613 8221.6547 16307.6486 16075.0388 14989.9535 81495.2997 6944.339 15401.7585 7985.705 14856.7492 5995.3054 20942.9176 17305.8702 21871.8199 6413.2092 8842.0814 10926.1903 4533.422 8963.4514 308056218 cueo Metal Homeostasis Copper Detoxification Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 1009669.5101 1619442.2849 6585.2239 22469.0349 35593.3129 10707.4581 3790.67 58947.0049 7759.9826 12849.3163 17063.4521 13620.8418 362846.122 10958.8152 20959.788 12091.5312 46284.9663 46284.9663 19161.584 36444.1584 14517.7941 7739.3421 15293.1273 7280.1569 17918.8439 8335.3459 17000.2154 17088.6685 21562.4414 47856.6249 25325.1561 13760.4123 11724.8471 37449.7386 21731.2408 24700.9929 57225463 arsc Metal Homeostasis Arsenic Detoxification Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 18103.8313 4918.7609 6708.4917 12304.9615 5370.9024 18041.7176 6097.7006 23784.6306 13685.2035 8940.5258 164612.4418 14084.7425 8470.4402 7860.7512 27662.5397 27662.5397 6105.6278 33401.0069 13122.4098 12594.5719 17796.5935 8376.7488 21388.7523 7162.05 15655.1833 8077.4841 38895.2876 12819.9617 16558.6167 6682.5309 36859.9329 9679.2132 6804.9168 17001.6523 379652678 chitinase Carbon Cycling Carbon degradation Chitin Solitalea canadensis DSM 3403 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Solitalea;species:Solitalea canadensis; 5735.4861 10712.0457 3008.9013 69586.1665 3630.0198 3609.539 2577.4437 2577.4437 3049.5192 6305.6636 4688.7084 6823.2205 5016.3146 4228.4469 2248.2693 2589.9859 5980.5118 2551.2593 11178.3056 4721.9845 2773.7085 2935.147 4587.0049 4674.9039 5101.8362 194342142 urec Nitrogen Ammonification NA Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 27204.4541 12138.2276 13974.9127 12821.2791 4833.5791 17800.271 24371.4788 5572.073 13512.3998 14997.377 7731.5697 295212.6328 13954.7443 15568.9589 18567.1377 27832.6108 27832.6108 12264.9258 32585.0178 14417.2762 25875.0993 27585.6955 25743.5915 9076.57 11578.1495 16961.9267 13009.9433 9812.7527 11928.5132 42294.9545 8946.5117 11872.3777 11975.7229 9947.2428 37345.314 153010072 PRK Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8915.5085 4646.6915 9840.845 3090.7237 2381.132 4728.3471 3355.0724 86224.0961 23674.7223 3255.2317 3567.0307 3567.0307 3381.8008 10498.0535 5912.981 6264.3908 5720.899 6222.867 3072.5475 3791.8596 9331.594 6755.9493 13509.3141 12442.7294 9800.259 4253.5282 4234.1067 3588.0707 8022.5247 333810248 tehb Metal Homeostasis Tellurium Detoxification Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 5842.2229 3057.5133 2483.856 2084.2039 3760.8177 5462.5571 70558.8357 7167.4105 3792.392 4279.8082 8871.537 4735.5055 5320.2467 2174.8757 3074.0672 6431.7479 139485.0476 4941.0153 6887.1112 2169.3808 3491.3199 3900.2753 2292.2844 5651.8464 260645698 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 61843.2166 1150961.8347 90848.5411 54140.1977 20956.4911 35730.6103 131304.9513 30916.0859 49080.1159 47171.9449 61345.1401 2295643.772 73228.7721 53883.0582 89019.2283 39549.1412 39549.1412 43488.8751 71487.4726 43158.1164 53128.4783 200216.7805 95418.6643 32518.7476 35775.8771 46205.9711 31902.4988 114117.2092 59524.6054 217083.5083 55500.8747 30943.0023 46001.1416 27211.1261 57419.5531 147850545 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 13625.4236 10537.3529 12639.2449 14957.0527 4097.6171 46137.0969 2944.1452 18678.7137 15708.9893 11549.9843 205443.7896 19629.7122 54031.3345 13096.012 6804.1387 6804.1387 10148.1029 28709.3113 18542.0457 37159.5706 13366.5777 8379.8829 6810.4529 9928.727 19859.6592 6253.3961 37116.5679 51340.4233 17044.9838 9690.7514 24065.5744 13161.3486 14948.3828 11241.8563 295897811 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 20197.7686 10868.3168 6301.0748 1775.5892 4147.7829 64062.4521 3882.0651 13078.9984 4954.4621 71440.2269 5675.6245 5543.3788 7585.4863 6233.2871 6233.2871 3488.8373 9347.5329 4955.7566 10541.2306 32517.643 10061.3281 3765.5509 9391.8787 8304.2837 7023.9039 13887.8024 7010.0957 7901.7659 3081.3699 8608.7869 8735.6038 4171.1013 8396.9737 345039055 atza Organic Remediation Herbicides related compound NA Bilophila sp. 4_1_30 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 7689.7763 11697.1527 10948.4923 4415.7931 12761.2268 14913.3187 7492.8573 49947.8045 8248.6061 377020.9017 19987.2357 9815.318 8932.8113 12630.6021 12630.6021 6902.472 25283.8366 14981.7283 10522.9761 15909.7871 80115.387 6916.6536 14474.9537 19481.2916 11114.5304 54867.6873 25958.9469 21434.2111 9191.4964 14052.4675 15277.0267 20949.203 39393.8376 379990593 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5962.9506 7375.3524 2111.9504 6437.9874 6303.4626 6494.2242 20990.1212 5557.8344 2191.4943 154156505 tktA Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 5356.5436 9135.0311 2938.2399 2691.4658 5170.3083 13550.591 5260.992 105390.0706 5869.6213 5602.3591 6492.9664 4163.135 4163.135 4084.4896 8337.5959 4970.7592 7219.1046 22265.2016 4100.8505 8563.331 22240.9093 6630.7217 8703.6621 9965.0756 3797.0581 9613.2064 7192.4474 8864.9367 4548.8772 5409.0792 74318308 phn Organic Remediation Herbicides related compound NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 17905.6969 16099.9559 14996.2765 7099.3437 4884.1282 46591.4667 10746.2035 7242.9399 9357.7419 10832.7031 194840.1705 8584.4486 8509.4084 29222.3531 22368.3154 22368.3154 5868.9202 17627.8922 8225.0676 18612.7575 18475.8002 10332.1375 5424.3584 7288.0612 16254.2168 6400.608 21679.6252 11095.883 16442.0957 6496.6125 8245.8377 9791.4594 11959.7835 9663.1711 134294063 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 196669.2416 6788.8721 12937.7798 5260.5079 5333.5335 16186.9354 17198.1625 6436.2338 707983.654 17545.5348 34576.5864 6270.7435 6270.7435 7405.3412 16050.469 7538.3398 9882.6743 6946.7339 6798.0316 36519.4183 5403.252 15456.426 19890.8945 36117.9738 7861.9657 13021.012 5360.2402 9189.7159 8363.3044 17288.5502 4776.9675 385676113 chnb Organic Remediation Other Hydrocarbons NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 24255.1823 228961.3633 167707.8077 9039.9075 19790.7683 8393.464 10320.6182 22162.615 23110.5142 759806.8634 12940.4546 13461.7606 15539.4007 29690.3457 29690.3457 7653.3983 79316.2196 13037.8025 18866.1286 25214.2965 19581.5033 10404.7942 15906.0532 16476.4412 7844.9364 49992.1211 13520.4166 26857.973 12422.617 20388.4916 12478.998 10089.7605 17121.6037 219670888 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5464.5703 4664.2983 5162.3581 3073.9916 8086.3682 5696.3334 4308.4083 97869.3821 4595.6748 4595.6748 63001.4539 7029.1336 7476.2518 16425.6094 7619.7605 7909.3475 4391.6364 13098.8337 2777.486 23406.1308 8811.6568 6752.2875 9883.6234 5053.71 8207.6732 16950.1491 315506270 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. L5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 186903.7297 11129.9476 64941.9155 10807.2941 11638.5523 5746.6244 8038.575 16938.6923 13879.806 15191.2497 18212.8954 34709.4334 1855016.6443 18980.4643 19260.1657 33965.8248 10768.7617 10768.7617 61138.8949 34080.9269 13540.0976 75314.986 79629.8583 81991.0194 34308.0814 15250.6341 75178.3637 23807.5835 48956.4262 26164.3702 26736.1761 24754.2779 22289.4989 22518.0753 24856.5989 36475.2503 116063246 aoxb Metal Homeostasis Arsenic Detoxification Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 83806.2616 17213.1479 52232.5852 145420.0272 18083.3792 10613.0891 21664.1555 62274.2919 61824.8877 39484.6998 41852.5134 72569.069 676940.7664 108814.3041 64427.5564 58386.0539 51019.7376 51019.7376 37815.8204 61974.5028 38035.0131 44339.3387 73524.2348 88865.7506 30216.5353 36872.1723 46654.8907 70565.3022 100741.9121 82650.6089 67416.497 31408.3254 52287.7535 68833.7448 28694.8574 57506.103 29136509 ppk Phosphorus Polyphosphate synthesis NA Salmonella enterica subsp. enterica serovar Typhi Ty2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 57426.2424 10302.673 19511.5838 25005.8301 6989.5668 6564.7554 15237.2342 48487.2032 13934.5765 72598.5128 39031.1758 266104.5349 10848.7365 17605.9948 44900.4366 27994.0467 27994.0467 9476.9188 48034.8754 22735.03 30687.0402 25335.0055 23110.5301 14843.2023 11456.9789 107481.8534 161537.0143 352153.3275 24134.8819 23387.0135 64648.6114 16761.3452 17617.1509 11674.2369 13449.3033 83836813 arsc Metal Homeostasis Arsenic Detoxification Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 5997.3712 12937.2701 6118.1705 3748.6547 2576.883 5638.5017 8364.271 7798.2967 122388.5741 6232.9857 5368.5102 8616.3676 3867.4698 3867.4698 3636.1601 9533.7148 7410.7786 4379.24 10771.6327 9072.1141 2961.6489 5440.3246 9228.0716 3761.3629 13395.9117 4635.9379 8664.5195 4220.935 7489.5662 4621.1202 3559.4658 7440.3071 71741024 terc Metal Homeostasis Tellurium Detoxification Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 5586.4223 10760.7017 4144.1492 6990.0575 4799.8946 4991.9096 2688.2044 354988.3339 5096.8851 6938.9966 6938.9966 3312.0138 8569.783 7313.1021 4438.4358 5842.9412 6070.1897 10014.4474 2964.1484 2842.077 5129.8794 2673.3775 291339485 linb Organic Remediation Pesticides related compound NA Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 359980.5474 1195272.0427 42172.7083 196278.6792 370693.1047 103839.8723 14358.6388 703096.9329 21575.0292 97491.7709 78605.4848 93191.1435 2934627.3255 336069.1415 165131.8094 335568.3176 201687.5725 201687.5725 87965.2501 271058.6528 88223.8762 89320.3987 430903.711 129384.1008 117568.8819 135686.4074 293770.9692 119645.1988 372597.7271 328962.115 196844.2599 172124.5732 147873.3146 214089.6274 225210.7546 75190.0319 296426247 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 93464.9275 16485.0676 36694.4503 27405.0987 113820.3121 29865.3486 124810.2433 69175.1689 92980.5719 33437.9513 52901.3357 46118.3732 1292200.5382 100875.9571 84735.5508 98503.8166 80743.9592 80743.9592 26453.5241 75250.2802 212431.0018 41427.1105 102520.0655 335207.6705 29743.7685 30091.5081 49403.0968 39950.9259 132496.4533 52186.1689 68489.3578 55316.0106 69409.9228 54095.9842 31310.2445 311403.4043 304393531 alkk Organic Remediation Others NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 6338.2083 9754.8821 7705.7099 11860.7741 34663.5499 3927.0036 7594.7684 3503.013 8619.1737 10857.7958 5737.7763 141675.7427 6951.2307 10803.3029 9664.2746 5106.0725 5106.0725 7851.9467 14695.5583 12956.4258 7061.2646 15945.0169 16839.8806 3859.6047 5062.1882 18361.3725 4299.6467 22898.7033 13977.7374 22770.3792 6064.5639 8326.0426 7061.8517 4802.9202 9805.2181 15026876 pcpe Organic Remediation Herbicides related compound NA Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3958.5185 4863.9754 2346.4547 3417.3466 4726.5929 2701.6662 5505.653 3508.3426 5155.42 4232.847 6168.255 13108.6487 4154.6807 4870.4727 9165.0063 3572.9904 2446.0384 149810519 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 20644.3329 19164.7355 26965.3848 7362.8324 10283.6457 14756.5207 17794.0503 12439.1231 31411.7575 302889.2527 15560.2481 29968.6209 26010.5737 13536.2494 13536.2494 19167.7513 23508.9009 15091.9375 10250.6834 46545.6049 16445.946 6997.972 9537.6946 20843.0173 14616.7727 28981.9659 113850.2749 24933.1202 7326.4814 17944.4321 19478.4217 16144.7806 16306.3645 217329957 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 112403.5537 31429.2998 132583.0353 65693.1778 72842.5754 34494.0098 50021.6491 59286.7883 167017.3047 49135.5848 53359.9273 705052.1764 46611.9492 56790.7502 67618.143 53173.4973 53173.4973 46156.9931 77156.2896 33994.6482 181457.5134 78312.0274 41713.2699 33915.2008 67659.7359 50823.8878 77610.5095 117675.4982 65934.2086 72167.0801 25585.2616 54465.6792 66498.8638 31507.7212 69676.8451 78494014 urec Nitrogen Ammonification NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 46588.4381 27704.4563 34619.7312 51538.3248 35411.3285 19649.5636 41524.3952 31616.6459 21473.3987 36580.0564 50443.2106 28591.7794 1039164.3774 62611.9863 54306.1652 31964.6986 28459.1094 28459.1094 28111.3426 50341.5771 40375.6015 40477.1358 41555.4416 99676.6074 21668.8043 20381.5967 46802.5976 16598.7302 119709.5183 32282.8123 56229.561 21725.3914 25886.8714 28857.7896 21417.4026 58853.7293 329849762 endoglucanase Carbon Cycling Carbon degradation Cellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 50429.2012 32956.6417 131135.4245 60252.6248 13712.9586 47354.7069 56396.0593 20492.9161 35820.5305 36595.5432 34226.6854 846806.8485 48589.3642 256425.5897 41375.5491 46829.4364 46829.4364 25106.7546 73854.5158 33040.1799 62721.5142 55202.4601 47788.5723 16959.8661 24915.4425 92686.5446 20149.8001 128264.5957 47771.6994 53375.2808 22185.0759 54666.5324 45840.6044 26806.8655 48569.0048 261878783 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 6489.5578 4993.0959 13543.8005 10380.6493 6630.9781 12918.8994 10855.286 1983.996 7464.4909 10756.0921 4727.8383 110945.3289 11273.2698 12835.9609 13223.4315 5939.8818 5939.8818 3177.8603 7807.0308 8068.4999 7341.9916 120211.4334 7113.9924 4117.7609 8304.9452 10701.7434 3906.9192 14202.1847 10822.4096 12677.1075 12194.1179 7246.8529 8694.8486 10998.8203 6734.3302 90655511 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 3O12 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4535.5372 76393.2401 4253.0621 7548.9734 5959.8018 3613.6628 8648.7037 4893.9103 6441.7612 3230.7184 6236.6161 10189.9735 4170.8675 2642.0636 3577.0739 6120.209 147225254 protease_serine_fungi Carbon Cycling Carbon degradation protein Acremonium sp. F11177 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Acremonium; 202708.2012 430173.4532 132360.4875 69372.0687 327937.2533 36226.0771 180859.8164 189067.5337 124981.5091 127656.5009 169325.0303 117414.0898 5010625.6098 226161.4295 447062.3513 351134.8636 150723.4809 150723.4809 126791.3831 188546.2542 108218.385 301277.9497 338504.2107 258443.3579 131371.2711 81196.2277 312884.8043 112872.2778 317227.2165 206956.6656 151659.7366 114203.3546 205003.8604 114575.4441 121397.7 363469.9385 313105090 dsrB Sulfur sulfite reduction NA uncultured prokaryote 8775.1463 13027.0624 452168.752 6553.9117 6765.6036 4475.8201 7657.716 5974.926 11286.8335 4099.2176 156366.5207 9744.0163 9380.6074 4206.8661 2698.6767 2698.6767 4008.3268 20575.0429 7640.2468 7355.9097 11444.1284 13152.4637 6211.5399 33813.483 8663.1951 8083.6802 19724.5839 6146.5999 10655.5705 6778.6239 5858.3992 6563.4989 6746.67 11894.2804 315001900 aoxb Metal Homeostasis Arsenic Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 121506.7498 26583.2241 73526.8476 26867.3368 80329.5426 16688.921 41165.0929 165348.2441 93083.4704 560456.6815 155183.2593 91446.6707 1488583.8881 96269.6747 67102.0668 486551.1029 126510.379 126510.379 59913.3506 125250.6874 58205.1687 85217.5098 127109.1276 75082.7703 76158.0209 83679.9613 70242.9823 116489.887 202905.5573 97847.1293 733307.6138 38010.61 93172.3424 70848.1719 86487.1162 1025637.8781 162452301 glucoamylase Carbon Cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 6246.9277 4394.8322 6253.9052 6089.2465 4763.9204 2144.6462 3303.4422 4904.6218 2571.2355 89586.7801 3717.0158 4346.7399 8441.583 3921.4563 8597.0762 4889.3121 3667.1253 6492.2981 8356.8064 3182.2917 3489.1066 5505.6827 7177.7835 9158.8043 6465.3543 4238.3492 37455.2133 3256.9952 3793.7433 9260.5466 242117797 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Lysobacter sp. OC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 14472.3698 30254.1121 159899269 chitinase Carbon Cycling Carbon degradation Chitin Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 13178.2346 3233.7902 8460.328 2946.4278 11602.5982 2475.7702 3570.7975 2564.8266 2564.8266 3325.1149 8090.6846 13367.4221 5691.7319 2447.1475 12199.7224 6994.3427 3870.2278 13547.5768 13809.8052 2332.5901 3871.941 11433.8961 3375.6584 5396.4712 303294878 alkb Organic Remediation Other Hydrocarbons NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 8632.8536 6711.5583 9887.6096 12867.7534 6463.1918 8859.2564 55251.9903 3190.8065 10174.4812 17658.6499 7645.2197 131924.5642 15613.304 8189.6168 17648.7933 6785.0462 6785.0462 5939.4466 24707.2126 49891.5476 5421.6201 10332.7641 8802.2898 4752.4925 9947.5001 72229.8161 10412.3531 23076.2298 24019.0453 15588.9713 13062.9682 11244.8931 12723.2099 8378.8873 8530.236 1223912 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 16371.9209 5347.4592 10398.2998 2181.29 3081.1213 4236.3104 30001.5772 2288.3849 2288.3849 3576.552 3145.4874 9557.1685 68303.3891 14968.9418 2081.2676 3834.9751 119716380 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 53055.0084 14519.2738 194199.3553 47649.1355 140080.3573 82446.9778 79600.8305 98805.6843 32174.651 36007.4699 55895.1555 78856.0242 670021.3047 42192.0725 78121.3175 65254.3736 63122.1715 63122.1715 45230.1591 79855.722 49392.4938 96747.3839 60284.8458 37180.7773 42746.8434 60860.9525 56582.6809 37154.1767 261226.4444 63555.5285 154608.6322 37974.825 44402.375 161569.5846 73924.2785 49380.9162 334703320 fosa Virulence Antibiotic resistance Degradation Aeromonas caviae Ae398 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas caviae; 5464.8611 4632.0406 3903.082 5007.5257 156532316 amyA Carbon Cycling Carbon degradation Starch Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 4388.2916 16410.1357 24799.107 12273.7044 5562.6661 5884.6803 4317.5818 4669.4323 294200.3625 5236.2776 9447.2737 11305.5412 8388.1048 8388.1048 3194.077 12552.7482 27493.0528 9180.4248 4966.6793 4668.0245 15040.3163 3262.4917 17499.392 10257.5705 13795.1211 6867.8802 7752.666 11440.4941 117937828 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Mortierella verticillata superkingdom:Eukaryota;kingdom:Fungi;order:Mortierellales;family:Mortierellaceae;genus:Mortierella; 15967.7041 192008.5418 163556.7485 120689.4242 32022.7921 11211.9101 31934.2983 14411.2479 22151.5013 26459.455 24187.4117 543705.119 27034.2472 27462.2475 38626.3843 129666.1121 129666.1121 17446.6787 28662.1235 24599.3495 22315.5674 75350.896 34108.4596 15948.0925 37647.7003 33160.5425 11024.4454 201752.5577 26271.9985 37393.8598 11986.5756 28489.8238 48112.4177 10666.9346 21794.9716 340526396 amyA Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 29748.06 6876.4064 6560.2145 2140.28 4315.1156 3916.4836 6147.7222 6102.4983 2611.2952 99296.3609 6573.4724 6375.0526 26614.7924 26614.7924 4728.9843 10388.9378 7105.7596 5486.2232 7942.9051 12868.1927 4575.8306 3806.5385 8807.9744 3333.5804 15030.9732 6740.469 12292.7634 3870.3498 5377.3027 5506.279 3185.8069 8479.18 375143009 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7044.7533 13011.2714 4525.1645 8266.7125 14367.3079 6013.007 3785.5085 10744.5904 4190.4395 8024.8157 14591.9988 3944.5056 11144.0023 7169.4453 2974.3693 4681.3843 4955.4473 3438.9794 148954201 cutinase Carbon Cycling Carbon degradation Cutin Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 9269.4642 6727.4391 7260.5212 17869.9539 6084.8472 8053.5759 29760.8351 6679.3513 10076.247 9546.5994 124163.3974 11573.1432 6234.8854 6030.6168 4500.3943 4500.3943 30168.926 19937.5502 7502.3499 5230.6708 7629.2475 11133.7837 4343.3835 5583.389 29468.0355 3341.9352 18188.5304 10735.882 15048.4896 8106.6119 34990.2795 8851.3962 4293.6317 8447.0511 389933206 tpha Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 12449.1201 9142.8876 21560.6229 5542.6031 9829.8176 9310.636 6864.628 9394.4992 42279.3309 6643.2336 189195.2411 15646.8567 10742.2862 5001.1971 4924.5427 4924.5427 10330.8491 20221.9791 11124.8752 19407.8131 15123.8216 21930.4372 8141.53 7601.0384 14239.2109 19833.6229 24107.498 13467.8548 11671.136 38035.3829 6822.9812 18574.0418 8061.4041 16719.8716 109455731 vana Carbon Cycling Carbon degradation Vanillin/Lignin Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 58366.6081 17254.6875 525492.7768 12656.4811 6737.5629 12630.3494 9852.0016 9443.105 25816.0263 19561.7063 17114.6402 289892.1405 19961.6144 16725.5824 15747.1531 15469.9989 15469.9989 12402.9721 23617.2225 92086.4276 24754.7173 19242.7409 15686.5077 9273.3836 9839.2798 21006.8311 7267.2588 58444.2203 28777.0859 66621.1659 8279.8212 13640.617 35075.9377 9735.403 30785.5185 133740622 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 11649.5975 22213.8923 6027.8527 3284.691 3284.691 4016.8286 7704.348 7283.3925 2133.7173 3106.8878 6710.0941 118168977 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 1222400.8094 11374.6757 22480.7851 32395.2466 20312.8623 5400.6136 55288.959 59907.1386 33203.0375 34049.0274 142904.4585 70578.7994 683383.1728 71627.5464 39032.353 78007.7808 63400.6559 63400.6559 48684.0954 64062.8614 31807.3111 68325.1082 45037.3156 49702.1795 29531.6051 38933.0758 33477.6685 35761.5808 117644.8476 55073.163 44821.3638 15852.2594 87366.2 30429.7172 25036.2282 42606.0217 373809780 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15697.7007 26134.0122 2191.6221 5965.047 3699.257 12694.0211 3227.7133 6754.1745 6614.6103 3930.0375 3806.708 3806.708 3372.9757 6472.0678 3274.1203 9102.7238 4793.6178 8656.2658 2774.5518 12269.0952 5853.518 6043.4649 17099.92 6872.6107 9678.4677 2271.2695 4075.0193 4586.4368 3896.7877 8197.8444 221735169 ppx Phosphorus Polyphosphate degradation NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 19892.5808 6200.853 9601.1088 32733.0212 28800.5249 85795.8498 4567.5311 6623.611 16202.6608 43631.8067 927679.7186 15960.2804 10953.393 18840.4634 16718.5106 16718.5106 8710.4273 28037.9606 50810.7328 8199.5711 23197.2711 7722.2557 116817.8857 7051.5708 17821.4957 19596.3789 26912.1659 25099.7545 33913.8675 8344.1404 10436.1268 33603.0117 6677.5667 81549.5695 378951267 limeh Carbon Cycling Carbon degradation Terpenes Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4281.0478 10503.2479 36702.1848 17489.0163 7358.4057 15515.1119 10239.9037 7135.4769 9435.6885 9461.6139 380117.5015 13676.157 16149.2026 39517.5718 16922.0774 16922.0774 29107.5818 22961.5743 11423.4739 79028.7527 6512.0704 9287.431 3179.5742 11030.7283 23398.676 4822.1592 18183.8522 21472.7103 17908.0396 6813.4199 9757.1833 11970.107 8875.9932 5391.377 94312991 napa Nitrogen Dissimilatory N reduction NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 28160.2171 3266887.6277 890290.23 10817.7692 5677.2081 6852.806 12194.3147 12435.558 22310.4293 28563.9568 410662.3282 11048.8117 21669.6519 19895.8297 16935.5762 16935.5762 21954.9082 24636.4545 12795.7881 89457.7306 21165.3834 50797.9169 11810.7105 9384.5651 16907.4154 14145.1234 48911.3114 18490.7684 16578.2902 16977.3225 20395.963 13525.5566 10410.7559 188268.4805 117558989 ppx Phosphorus Polyphosphate degradation NA Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7041.7984 110248.3854 3300.6577 4785.7711 80684.0057 73939.3319 3447.8941 6427.6011 4880.4268 5753.2066 4474.1609 3065.2877 2409.365 7972.3593 5653.9985 5162.5528 3351.6943 3400.5568 7149.023 357590129 ppx Phosphorus Polyphosphate degradation NA Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 17176.2141 6267.0238 2554.3433 2387.8667 3818.6908 112392.7959 4711.5311 4711.5311 3665.5241 17883.3415 4341.8042 5062.241 7878.4463 70777.0543 4385.0422 10410.2908 2154.4412 3694.9504 5491.35 2733.9473 167350105 trze Organic Remediation Herbicides related compound NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 34602.9941 100469.7931 16416.8069 7700.9391 15787.9533 14414.8209 39809.8046 16425.4247 13498.5605 26651.5031 36425.7122 418183.5734 31964.4892 20853.4621 21545.3403 21385.5559 21385.5559 28058.3806 41997.7204 47598.1349 12148.1072 75841.2456 20622.3118 8831.531 48697.0616 36674.6401 11271.3842 52712.1008 31870.139 57815.3616 9593.6174 20248.7506 18983.7159 9054.6971 112446.7813 311069363 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 61327.7119 27666.0075 9136.9226 24445.6496 33094.7127 5597.8373 34731.2287 12436.8576 15290.8626 13534.6637 20975.956 35884.9836 201831.1365 17686.8651 17617.3899 13703.8634 9113.0644 9113.0644 16017.4394 25633.4649 13522.5477 14486.3244 57121.1195 37478.162 39086.4076 10879.7661 21573.3091 9179.8289 40713.9262 12463.6841 41952.2635 9654.2764 15904.7216 13461.5474 8992.6394 30338.2731 225172788 APS_AprB Sulfur adenylylsulfate reductase NA Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 10013.5036 8955.735 15795.6764 4144.2309 3861.225 5333.109 87687.4279 6653.1518 4448.3142 10712.2381 6727.5513 2235.7364 6792.3569 7466.4791 2367.0541 3687.4053 4939.2394 3416.6302 8532.3821 302410373 nitrate_reductase Nitrogen N Assimilation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 19462.494 11559.1834 16957.7068 4079.4191 4642.7849 6182.9785 8224.5817 5781.3381 144963.1168 8124.5883 14131.0724 5585.0912 5382.7482 5382.7482 6184.9571 20229.723 8361.6952 6321.9787 21765.8252 11689.7181 4849.4391 10019.94 14580.8557 7101.8032 26885.8014 12103.5625 16388.3771 3514.4862 8189.6621 9905.8769 6581.7115 12644.8365 256397567 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 503165.6203 402759.6393 259904.8963 76066.0893 58176.5846 126060.848 250428.8479 109419.8081 230378.9606 190998.7265 193063.188 3247738.6235 288455.2449 271691.9863 251990.669 408119.9308 408119.9308 152396.5354 181932.9399 219816.7595 387586.6753 368183.5162 841674.0565 152141.9563 182656.6989 229632.6383 179800.7354 824795.7367 271348.3753 191096.7788 111180.5591 159995.651 235829.0642 152879.3777 189416.9854 171685206 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 21214.1586 12660.2632 26425.5907 38975.1223 23522.7313 7733.0789 37062.2208 23160.2996 28745.8612 19225.0479 25842.8795 15734.5695 585260.1548 40503.8857 32257.4404 21661.9826 36580.0016 36580.0016 17016.959 29154.6293 25718.8473 28190.8335 24283.0293 43996.036 10853.0811 10355.267 29635.1491 16671.3322 50972.5174 23197.7171 32331.1644 21720.226 16505.7586 16174.4854 27870.3067 42583.2119 261284264 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5547.2398 11813.5793 2809.9739 3702.1728 2715.4017 4453.3037 166643.9124 7833.5859 5273.4216 1966.2935 1966.2935 3198.0628 6901.138 5259.7227 3803.0063 6890.9134 8715.641 2604.4718 2703.073 6525.3179 2051.8137 11696.7557 6408.3665 3122.0126 3816.5022 3602.659 2679.3416 8554.8362 70930946 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7819.2422 3463.5267 6138.0745 5989.8735 10975.5526 5555.502 2705.187 154855.4649 5472.2878 8264.6632 5935.4892 2359.4853 2359.4853 4467.0079 12520.887 8883.9245 5144.9913 8495.1045 9360.7101 6337.0161 3962.0215 9169.3834 3463.5959 14153.6942 8158.0091 10360.7989 9585.9375 9494.8806 7341.3802 7336.8081 10757.6437 336103127 glucoamylase Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 133017.9951 37779.2434 48116.4128 95520.747 24512.5937 17870.7622 23914.9058 223603.3533 314298.8941 28593.9653 109079.6752 123987.6533 1753978.187 43482.2975 197315.657 114272.4776 129947.7188 129947.7188 27336.6967 70906.6243 44404.3771 122745.5125 237218.3931 72929.9399 96593.941 44484.0149 64896.7836 57336.6922 207121.9546 233808.4121 198784.5081 34247.1445 46608.6842 63778.8309 55177.9183 63254.0669 225037951 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 4554.6095 4706.9645 2277.2179 8502.0281 5461.7424 10020.6405 183737.4828 7698.8534 7621.5791 25417.1689 7887.7586 7887.7586 3623.2417 7662.7424 10837.3155 20594.5255 4956.4562 9184.9001 2827.8067 17141.0836 7567.5273 8640.526 3559.6231 4237.2146 5510.1172 2171.2129 18860818 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 32846.918 7633.2215 5045.0215 14019 7688.124 8608.4796 10918.0703 4241.2132 8717.7346 11282.028 7304.9792 123299.3068 21818.0536 16476.8971 14359.7926 15237.3299 15237.3299 21259.9708 15119.2771 12660.6504 19631.0206 50026.7672 11417.9442 5921.4308 14206.8975 14450.1796 10337.2074 42079.2794 9779.5107 17666.2401 11321.543 10190.7535 12204.1881 12373.0942 10699.6496 338757759 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 35676.1812 18884.1508 50223.2671 40214.1049 17335.6735 31951.6942 21828.3454 12906.5191 24330.7042 44402.8955 17764.9545 733867.1709 48571.7167 47797.1388 33600.9909 17779.0358 17779.0358 23113.6953 63251.5467 46365.4158 47281.633 42516.52 53946.2991 17307.3104 18554.2692 36374.9445 16955.3544 71539.3971 17572.5052 53876.0786 24348.4175 17878.7118 26283.6763 17792.0345 36090.7256 294884069 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto141_4W superkingdom:Bacteria; 4878.8073 1918.3591 2464.396 5834.3645 7952.195 7952.195 6743.4663 7214.1307 2293.0804 3716.0357 2762.2885 8600.5981 3057.4108 6153.3924 154286816 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 5845.5954 4266.3487 3060.9916 2335.989 6445.05625 4232.87445 7775.8743 61474.1475 6604.85305 7094.45495 3021.2175 3021.2175 3485.7843 9310.65715 6797.8651 4750.19475 7983.65265 6120.0694 4153.2227 2702.2986 6804.5581 17574.6827 5933.56135 8037.28705 2838.31685 4105.6255 5908.68115 3041.1057 9646.9354 99030545 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 12633.7931 6131.5973 7174.7414 7891.0751 5930.2597 58694.8321 14539.5207 16253.6765 18940.0993 21870.4119 163952.1933 20791.6383 7918.4334 129404.6432 19485.3328 19485.3328 6662.5051 22208.7394 11733.2313 6339.6823 10900.6363 56472.9312 6385.1926 12922.1698 26288.1619 21977.4026 15200.4839 15207.3649 17502.2787 5505.6615 14933.3327 14980.6829 11573.6017 21579.224 87125358 endochitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 73462.8867 4261.8432 4326.088 14787.5976 23683.6321 79406.7557 9916.0749 11369.1728 3313.8595 3313.8595 4041.6686 9999.6666 8141.8096 4268.2893 6575.4218 9796.1633 6288.5595 3355.5309 34024.9813 4004.7365 13122.6528 61520.2152 9805.3434 2511.2016 4309.7904 11858.3968 3368.7986 15929.8852 115520555 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 35422.5396 7532.7979 2606.8576 3264.2365 6300.3413 182413555 nira Nitrogen Assimilatory N reduction NA Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 112961.2724 537183.3862 51670.6755 76856.104 122592.8288 130690.0585 132361.7723 93399.7594 70465.1489 161941.2877 166954.6333 73171.8834 4882333.6007 101813.1026 112510.3391 101569.2683 220281.1675 220281.1675 150447.575 145206.281 72107.0559 607962.0268 131752.1611 165326.4592 68798.0562 63136.8396 93516.3915 115046.2067 206706.3591 98413.6497 142139.3824 114523.8754 79247.1819 98007.3533 92704.2421 144623.4265 194343579 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 32939.3396 74335.5309 10363.3579 927867.9852 11439.3618 25020.5987 26180.7035 27350.8081 24437.3416 45044.8051 1256903.354 23269.6762 29416.6852 146311.5852 13826.6109 13826.6109 24680.6866 66529.6355 22008.6015 34026.6324 64062.2643 58527.3535 38685.3109 24881.5015 49419.3026 187181.1156 39203.8945 33648.1233 35497.1698 175349.294 16869.0126 27439.349 31543.5657 42986.4242 377532780 amyA Carbon Cycling Carbon degradation Starch Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 30311.7467 8365.7098 10397.6625 13878.8009 6126.3003 44378.6219 21129.4726 8326.0109 33290.6584 19152.3164 14153.4676 225492.0668 17660.501 14062.7688 34142.1011 13778.9549 13778.9549 9203.0047 28397.4576 13568.6432 10116.0275 21746.115 31332.5823 11420.6609 12108.3866 16627.6074 10984.5104 199458.5123 10710.7549 29846.4167 13026.673 13488.6294 18688.2151 8520.0253 26756.8682 302895821 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 35796.0025 14949.1295 11638.666 5978.2549 7691.9767 25081.0563 14214.6745 12263.8985 18699.2603 13393.1799 306550.1509 17370.4958 20151.9155 9644.6746 9598.1766 9598.1766 10064.0758 25534.2766 12254.0501 744087.9787 16554.613 19277.152 8026.7178 7183.3701 23547.2596 8976.3815 50641.1465 30449.4034 24665.1573 6919.0491 15742.1802 10358.1281 5956.6462 20621.4359 389827067 amyA Carbon Cycling Carbon degradation Starch Microcystis aeruginosa PCC 9808 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 24008.9334 18236.96 28418.4351 21084.9128 12276.538 21426.6415 15183.4551 22366.0629 19018.0078 14790.466 9644.4173 419084.388 21386.6763 20721.3584 17033.2382 9130.6342 9130.6342 15614.9384 31961.6259 24860.8994 21500.8515 25681.263 30518.9775 10178.4705 10716.9397 22690.3496 8141.7191 29985.5433 21833.6486 25552.8139 11408.7175 12841.0653 15588.3484 9263.8213 22134.9429 223962498 amyA Carbon Cycling Carbon degradation Starch Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 139305.4376 63314.0232 201260.274 138206.6404 170817.1596 109667.7428 221480.0083 106119.3249 136718.4135 93637.1282 129980.3796 124057.1962 2292509.6206 124549.0205 166411.082 190260.0696 112129.2638 112129.2638 94283.271 131979.7972 93394.9033 97405.1162 133427.1226 126091.4165 84748.4476 66322.5514 125415.1185 79847.4832 216181.1577 126520.2336 279795.5187 53254.2142 83273.5961 87872.7076 58046.9162 226294.7109 357023388 PRI Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 22596.2297 14137.3634 27242.241 8579.9647 10489.60005 23942.443 318743.35815 8668.51665 17511.18785 14680.5058 10969.9689 9643.87265 19210.4148 10619.4115 17069.83345 12440.8631 220904639 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 24573.9424 19968.647 12040.8947 17969.5747 14997.8057 25199.3477 48069.0519 29115.9173 8818.5958 18318.9406 16682.7783 11900.0054 322341.3675 29877.0873 20777.3731 14493.0831 12039.7473 12039.7473 14098.5359 28987.9152 16424.7624 20057.6326 25217.0918 23237.636 21311.1531 9508.472 27333.5892 14634.3088 120462.6898 19328.2273 26316.7496 15625.3415 19970.1683 15719.2991 11915.207 32545.3772 90107177 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7040.4804 8627.5817 326207947 terc Metal Homeostasis Tellurium Detoxification Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 15166.5634 34453.5009 8685.6796 12594.066 12216.8997 84575.915 11232.2528 12752.6914 7261.0296 237384.9285 11745.3693 11612.2233 29015.643 8091.8174 8091.8174 6437.191 12818.3194 12161.0059 10016.9667 15432.2861 14189.93 6346.3499 20923.6069 8446.802 6317.7552 19129.009 27064.2195 26533.128 8627.7164 16558.0708 15780.3153 7541.6342 12296.5807 323365472 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5766.9968 4129.2402 2148.2538 3686.4542 4678.0272 30379.0462 4519.6999 85965.7937 6141.9588 5849.7668 3075.0671 8657.6471 6017.1515 4306.8912 9957.7589 3085.43 2875.4898 5437.1609 17222.7565 8251.7677 7560.2512 2190.5946 4717.7197 31106.3602 2651.9007 5503.9483 37520099 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 72823.8829 11718.3016 65642.0375 29928.28 44860.4962 44114.3006 11680.4499 37846.2208 88558.3585 44289.8199 121439.2189 57680.4543 707369.2455 49247.4826 39609.5971 97808.0138 86726.4329 86726.4329 28111.443 90320.2905 34713.8368 30926.7712 61409.0184 45181.3676 39203.831 46964.7271 39010.5518 45056.1859 99725.3337 31636.3738 47986.7959 20643.1969 50724.0359 47012.1123 45569.228 51460.7014 89113925 glx Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 17612.4318 91639.7223 28505.5236 10879.2745 9986.8432 5767.9423 10877.958 5362.6225 10477.4526 10146.8106 9282.889 134506.127 5303.5266 9324.7495 209730.3565 19886.7097 19886.7097 8207.5013 30056.928 12896.7028 26780.7227 26109.7844 14794.1185 19367.3224 10211.5194 8638.9142 20356.2293 54808.5574 34584.7584 88074.6889 49325.8521 17912.6071 17252.6499 9463.2623 20007.8928 229362287 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 53918.9839 12360.915 4244.1668 7328.7171 9275.994 5278.0604 4567.3586 6850.0317 4346.3565 2630.0659 2630.0659 2627.9772 9717.982 8335.8314 10122.6504 6138.9206 13630.0557 3354.5028 3656.1911 7469.2527 4250.5108 11445.8057 5752.8989 7522.4403 4391.3463 3981.653 3910.4736 3165.4627 6782.1617 345633978 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 11024.4015 119381.4759 84003.0466 8169.4911 17131.3937 10418.4558 5663.0928 184318.0653 14919.9218 129272.7736 68101.2826 37734.0942 5796.934 28225.9032 28225.9032 6439.7215 20528.3186 15519.2209 38603.3858 17073.355 10684.8355 8862.549 12626.7417 12675.8331 24924.9018 24347.4863 29350.1458 23569.3476 10524.3039 12977.4137 9329.4613 8408.9562 14548.4184 50542690 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 8043.0853 10066.9872 7198.5975 15450.6956 4695.5715 3362.5352 5629.4499 7980.5412 4025.8586 136535.78 6614.521 11416.1936 4670.8205 4670.8205 4082.8884 13509.8356 6680.1057 5389.3805 8409.8586 44876.2578 4293.9615 6483.8845 7750.4152 6389.2989 14646.5723 4029.4192 10001.8471 19793.7737 7926.0959 24278.8028 6507.8475 7739.3463 333991355 cmci Organic Remediation Aromatics Other aromatics Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 16619.9884 17534.8506 64254.3422 21251.9167 2463.903 13107.6597 4175.0382 10286.6039 13036.0873 88853.0192 129522.2407 46678.9536 9971.62 12006.4269 10004.3115 10004.3115 6954.3626 34970.984 13836.4829 8111.6485 15004.3485 18394.4199 64686.7922 17062.424 19462.7896 36443.4906 73843.7906 26195.9269 32932.6357 31266.8536 28758.1443 14539.8724 8333.675 5194.0668 220711137 ppx Phosphorus Polyphosphate degradation NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8487.2633 8690.8956 6084.0024 4956.4993 2245.0862 8246.8694 10909.8572 4367.1289 138178.5971 8454.3721 12714.8708 5461.0558 5461.0558 4517.7166 14566.6679 7854.9364 4262.0134 12382.5137 10200.0786 6846.1804 4648.1429 11200.1568 6549.5572 18267.2734 4508.176 11011.9884 4225.2198 6790.4087 7089.0697 6050.9962 13816.3697 375140952 linb Organic Remediation Pesticides related compound NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 24006.1547 9009.5489 13352.3963 7256.8374 26943.5579 55732.6426 9715.0686 22063.0068 21182.2873 17731.7247 388082.3033 8189.2817 16314.912 14701.5567 23115.8464 23115.8464 6877.3716 179105.9244 15452.9846 8631.4985 94096.057 11768.9207 54289.3851 20202.2144 56197.4709 64349.239 98837.3723 31609.4264 58742.7123 22567.1314 29920.8141 18253.9729 35090.3767 30713.0887 422314263 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 823243.0868 29031.8395 22171.3739 15466.6508 10595.9639 15008.1352 27146.0053 48482.0699 58485.0455 32657.4771 47126.3938 20022.0379 379628.2843 91762.8754 42334.4438 20788.987 31756.5206 31756.5206 12517.3121 40746.5144 28713.5331 25418.3784 64388.0326 18090.4581 14681.2403 19243.6735 22117.1731 19669.4864 55636.7408 15413.9108 26214.5666 12387.6951 20949.7781 24801.5255 85043.4194 31384.7891 315447327 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 4400.2076 355351.9128 11264.9878 2864.2516 7883.7246 8508.351 11167.6473 3991.4396 427531.4741 8657.0148 4387.0935 6358.2688 26364.627 26364.627 2993.6521 11255.4123 5056.8956 4001.9322 16157.8816 17748.5937 59847.5901 7558.7046 8658.1524 17920.9248 4521.0409 9169.2986 8436.336 4554.7279 6470.7963 9239.3916 4119.7046 247537086 cysI Sulfur Other NA Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 229141.1808 59823.1045 62955.701 14376.9211 43830.9346 333744.2649 264303.9396 136353.7172 78253.7381 155354.4506 140627.228 4598533.6883 426639.813 732087.4729 194744.3798 130338.4344 130338.4344 74610.2955 323899.8182 98845.9685 103273.1877 444808.8818 68314.9509 187987.5752 70832.4736 76355.2209 144648.152 371313.7849 67583.2862 125637.8917 101845.4281 153119.1462 285346.3799 88433.013 814447.6632 124898689 endochitinase Carbon Cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 111381.2343 29727.2691 117289.1992 46573.4343 33121.3473 10882.9322 74008.7346 37056.2651 51811.898 51474.9776 64040.0021 35447.5249 35447.5249 41198.4609 57036.5853 76303.4341 30381.9351 60556.6402 28377.5927 62163.4311 62966.3958 87083.582 14024046 pcpb Organic Remediation Herbicides related compound NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 8923.877 11344.4298 5655.0311 6942.6056 6006.982 28447.7351 7976.3018 12525.9248 17220.7754 211222.1323 8784.0095 6235.9131 5468.3785 4012.8767 4012.8767 6701.1879 14851.616 13737.8004 10440.484 21391.6681 10410.7402 4601.3738 6282.0768 12170.84 7010.6248 26221.4495 20224.5245 22999.1532 6063.8656 9831.6074 9072.548 17830.6442 14723.1727 237800695 cysI Sulfur Other NA Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 24025.25 14574.8106 7290.6783 9701.2606 13968.3547 11077.5494 8220.8571 15165.9555 25777.9563 24973.5659 221366.0353 10755.9296 34887.0997 19101.6629 8258.1073 8258.1073 14633.1756 22226.1399 15952.0157 17848.8483 38727.686 33520.2135 12301.0237 9034.6861 16269.1135 12816.6919 38690.1456 21102.6426 20118.0509 10329.5759 14183.356 14972.5597 10450.2241 27826.6618 151368479 phenol_oxidase Carbon Cycling Carbon degradation Lignin Hemimycena crispata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Hemimycena; 868247.0006 331120.8611 596015.889 1846024.0549 1338605.247 940990.1555 577783.8631 640973.3097 680570.8733 555271.015 521114.9716 394128.6779 11159652.2595 600098.723 713652.2224 1672028.1195 574221.0244 574221.0244 412280.7098 631553.4156 312855.606 602959.6496 678699.645 839910.2371 380371.2237 355381.2405 756446.9829 303889.0271 998209.2734 580047.9014 610316.965 321766.234 343094.6009 421334.7465 372311.045 1564236.0866 69301315 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 179664.9499 27427.5243 32115.831 49524.384 99168.5555 375396.1217 92518.6852 125497.9023 21653.011 31924.5085 32758.4118 18904.0417 933176.6375 45902.4673 40986.2583 45208.3916 25139.4342 25139.4342 31802.8675 62381.4058 42180.7549 44886.6965 44819.3863 59840.253 25895.9437 23249.1547 66212.1399 25713.9999 70480.7749 49399.6346 52400.2316 27976.6241 27503.0713 28609.3691 23281.0253 53233.7817 159482494 Sir Sulfur sulfite reduction NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 14071.9485 9343.5861 36849.9247 5496.186 16945.6282 11995.338 14090.7293 10467.6471 48728.0506 10846.313 359131.1482 11932.7925 19683.8177 12040.0871 12147.5716 12147.5716 7112.949 39121.8774 13211.819 10233.9644 15315.999 17783.5159 13635.2234 18303.1367 21843.1801 9031.9018 47128.4501 19678.4168 15419.6469 9594.8546 12329.336 13392.4507 10195.1491 76339.6355 357938482 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 15375.0042 7947.0037 9145.343 13818.3156 8436.7063 24296.9565 9362.9237 7543.1352 149934.83 23675.6146 22498.82 418214.1977 13249.3668 14585.1001 7612.8814 6260.1021 6260.1021 11137.647 18448.2705 11624.9627 15293.1706 17836.9481 16779.8315 7735.9947 9389.4263 47237.9102 15174.802 30001.9648 8041.8245 54403.7846 6279.6235 13001.5103 12622.4824 16427.4486 26230.2256 225021451 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 66028.6053 15680.4104 10984.2442 8605.5146 9289.4372 12172.2255 21579.7475 8633.7488 22701.0328 22777.253 13365.2177 447642.3596 29261.5746 23990.2822 19136.599 21213.8983 21213.8983 14262.8269 37373.8309 18260.1858 27474.5721 193015.7572 28949.8493 14662.8611 12181.6809 29745.5255 13235.648 38575.2924 21575.4867 20127.9939 8094.6516 12806.3561 18773.566 8177.4433 23646.974 154157406 b_lactamase Virulence Antibiotic resistance Degradation Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 4514.1763 8560.4774 14796.451 4604.5444 2600.6973 8158.0063 5425.118 3594.0171 5287.7589 6502.8106 75256.7201 5711.3199 9100.2533 3441.9539 3441.9539 2491.6746 10295.9538 4992.3447 4345.9134 5048.9313 23980.8228 6818.1231 13278.5237 10496.9013 11060.2445 8244.1019 5990.462 3047.1337 2959.2337 5634.2076 153963000 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 21290.8011 5157.246 7903.8247 6765.9461 6593.1473 9981.2435 7408.7053 10672.9734 174738.6321 8511.1581 13892.501 12510.3601 51545.5119 51545.5119 3229.6822 10742.8046 6621.3453 7210.3826 5060.8083 4765.0888 9420.4288 26501.4737 7145.0037 84570.855 10415.2824 12866.2004 2269.9414 4273.6771 14326.0438 4714.4404 6272.5433 374304258 pgk Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4231.3203 138051.4222 9964.494 2432.0272 3495.0576 3250.8352 3715.341 3975.6416 114309.9075 58225.4726 5348.5639 5071.3472 3745.0865 3745.0865 4873.3563 11168.228 4660.5293 3903.9328 7309.9267 6234.8817 2830.0093 4055.1333 7720.4928 3418.6316 13050.9004 3905.4161 6419.115 3289.3703 4270.2483 4780.9877 15878.6898 6342.148 299793943 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 90193.7474 15989.862 37313.0971 74663.8717 56392.8686 20755.851 88096.9513 53490.9306 32982.939 71712.5589 109408.2504 44428.379 1559815.7411 100002.375 79204.1783 105362.0772 35735.9449 35735.9449 46345.0826 117459.3678 86271.2918 79926.8331 97342.4081 75741.5338 36862.4016 31109.8124 80410.3277 46073.9374 188557.9775 109057.6296 85745.7625 34028.4343 81342.2926 51921.4431 41930.335 114495.6153 364000869 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium abscessus subsp. bolletii BD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 42876.7889 11363.6644 38342.5681 49152.9149 44870.9989 9459.802 418897.8699 55949.2286 36698.8996 41094.1877 44122.7482 36723.6647 3775139.0793 49375.9117 59910.0546 50793.3791 40858.3988 40858.3988 39904.6159 54999.3699 182737.3647 50542.3516 50373.7386 63285.8319 35597.0097 25270.3496 74828.3554 44600.8543 119462.8839 449525.233 64466.482 49357.6403 60933.1066 67038.9443 40387.6379 43620.1222 117998472 tehb Metal Homeostasis Tellurium Detoxification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 22028.7232 93032.958 6710.926 2724.4518 5159.2341 4050.6305 31451.8024 4903.0432 117661.7519 8986.6001 10708.1422 4431.7267 7993.7794 7993.7794 6060.1766 11412.364 12117.1499 4210.7618 9610.6649 8658.2054 2913.9119 9055.5774 22033.5643 3125.4502 15475.9477 8836.9222 12231.6059 3495.5148 4982.8862 8678.9726 3015.9033 6141.4063 282880570 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 73019.8687 4996.4701 5940.6519 7770.8703 3487.0662 6797.5837 11913.8117 214033704 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 19064.5832 5552.6194 9024.0709 13928.1642 10076.0964 97699.0986 10943.7512 113236.2262 12716.9569 28433.1715 20319.5431 187846.7909 53069.4554 21779.7406 14098.2797 12572.0107 12572.0107 11731.4338 96571.037 11746.3292 16020.2809 11366.9459 14368.3508 12053.7458 16574.0407 23456.2582 24223.9998 27756.0318 33309.0521 22408.0354 15250.3966 28691.2384 24476.9908 9694.5852 35284.4633 197090068 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 26203.1499 181143.2038 3966.6408 21576.4352 5415.0865 6685.7036 6028.5752 166163.2422 7840.6016 7677.5815 10431.0567 11606.9502 4495.2097 3483.0562 3483.0562 11240.6155 15928.1999 6653.0598 24406.2299 18772.655 10062.067 4971.6377 6257.8686 12647.0536 10379.1586 22027.1223 16074.0682 15381.2352 7405.3056 10330.7775 17346.1205 21650.3231 15820.7777 219666218 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 38830.3488 364007047 terc Metal Homeostasis Tellurium Detoxification Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 80790.731 30012.7269 2203.5681 18265.7577 7023.7307 4355.3772 123129.3175 3714.7213 14369.0593 5509.7435 9524.7385 9524.7385 4541.5493 13815.7014 5052.5733 4874.3923 12257.8249 4515.8943 3557.7655 7613.1436 8164.207 3972.805 9804.126 7170.7447 10527.0539 3418.6951 7149.7702 5145.2611 6098.0364 5445.1237 295414396 PRI Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 39813.2958 22517.2047 103631.7556 13751.5854 8329.3421 8315.7077 70992.7199 18286.6605 62372.0705 15104.2222 28772.579 36737.8516 486307.2344 122437.8812 19310.3047 43971.2428 55310.4793 55310.4793 51373.5056 68114.9245 107671.3735 43091.968 25090.0656 23003.6765 41901.997 21141.3798 47218.8714 28174.0457 84434.9823 44498.4209 95299.4808 19201.1046 54685.9892 33145.3643 55912.8379 138159.3917 331700220 urec Nitrogen Ammonification NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 27559.2888 9634.9024 13856.7719 19972.0408 12889.9138 4953.2313 24514.9345 43029.9517 9086.7833 13193.567 15224.9139 129483.8894 13910.5879 24892.4933 105257.9313 11255.3787 11255.3787 26921.3295 16031.8128 13850.048 13388.1637 22953.1263 14651.4915 13536.8769 14202.2227 12888.9577 17829.2694 27072.6479 20885.4922 23514.07 24930.7312 12181.2584 17034.0461 33894.7955 39330.7598 337768685 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 30889.2011 12788.992 18310.4664 6848.369 23137.534 6045.0591 10024.815 4160.0857 31741.9469 15508.4845 37418.4274 348757.5068 33579.6561 29336.2318 37870.3555 20951.9872 20951.9872 39727.4592 22041.7359 21028.7567 7322.1234 12752.4023 18432.4874 5660.6989 15623.0661 37168.8069 13781.0675 28327.5149 23453.4713 36671.8032 8693.3006 16594.3287 16190.239 10058.3411 9045.2999 149389254 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas nitroreducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12938.4116 22376.4037 7243.2432 4139.7037 2827.6223 17687.5191 33494.1292 8314.8575 266247.4699 6670.6134 18022.1021 18240.8676 76298.4125 76298.4125 7312.8574 66433.928 5302.4263 4586.6057 10063.7605 8557.4641 5334.2791 10407.5418 10028.7848 6903.1899 24320.8202 14799.5363 11991.8241 4040.8404 7143.0581 12086.177 12526.7782 5978.0749 147886064 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 99356.6483 11263.6191 14194.9242 37149.6505 62485.5497 8429.571 20097.2152 50708.7881 13695.6615 17619.4696 36278.3864 19723.5317 594090.9658 25405.89 39179.9557 31436.3869 95222.8804 95222.8804 20170.9926 42687.9161 24408.5489 53821.4066 34660.1412 22505.3311 51201.632 14490.792 60227.5187 16103.73 67100.3872 29046.944 139788.5345 19493.1695 25333.5237 33856.3009 29550.9468 22700.4623 357941071 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 85769.1471 45436.8765 30810.2193 78954.183 26477.5342 17352.1738 30302.3905 41596.873 26752.4448 56830.5555 95107.5723 77105.2439 632955.2087 64862.3052 61247.6928 150014.8104 86893.7726 86893.7726 47902.3703 89839.3732 39007.4924 45329.2619 85599.4911 65205.5498 54041.5497 57528.4391 62705.335 59080.1393 140671.5521 67873.9081 66703.5191 48379.5797 47719.814 82338.0458 40382.5127 81170.4506 383333436 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 15708.0263 8440.9153 13485.5939 2955.7988 3676.1648 4111.3241 4358.0658 3789.5334 3846.0937 6870.3317 11602.8855 6169.2656 6169.2656 9043.7658 11366.6016 7245.2465 18194.0723 9567.664 10964.2062 7128.8001 4814.6083 11956.1019 5822.9207 18732.2894 3506.3496 4536.6626 5953.7201 4877.0099 8280.5126 86570282 vana Carbon Cycling Carbon degradation Vanillin/Lignin Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 10201.7662 6294.1073 23587.6729 6441.2395 4544.3669 10295.3001 3228.2311 5940.44 6751.9105 4410.4112 285504.2925 46604.4764 16395.7421 42748.9442 19224.7265 19224.7265 7587.5218 16717.8416 11358.0738 32571.1766 13585.7371 15875.4717 14940.1705 20727.6935 3787.9673 30186.8797 15168.4501 26394.5082 3868.174 13417.0389 5696.1513 3462.3834 5528.5479 88702651 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 22942.8709 5298.1313 18190.4335 4444.8463 10805.1216 7896.0505 6826.0423 5519.6266 10777.7037 74340.7847 4885.1531 6301.2805 7117.8068 17309.8506 17309.8506 16413.1681 15927.96 7326.9106 10895.7071 28801.3876 5832.2374 9943.6101 5230.4178 7511.0196 5517.5584 19108.319 9652.6446 8136.7089 3079.222 13716.6554 11411.4677 4271.6029 27383060 phn Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4915.291 5298.1108 5346.6229 2620.3388 6061.0416 10643.6823 3162.5833 89609.6346 3660.2907 8628.6423 7436.1178 5733.2785 5733.2785 3304.5076 13954.8257 5438.8793 4508.8743 9308.1607 5604.6292 4590.7653 2861.619 7295.9625 2999.7372 10109.9246 5068.8017 9579.7813 2832.0108 3875.1396 6556.7931 2530.1301 60476050 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 21798.555 10740.9196 8963.6325 12620.1111 10116.3458 16984.1063 22342.0232 16967.3494 17586.0004 214344.511 18434.5954 16035.4433 160407.9638 8645.6153 8645.6153 12899.985 35889.0952 10716.2126 15503.9217 23391.2652 12080.2037 7099.0145 12253.4438 12952.9407 7646.3459 36551.9556 14755.9995 91563.1351 4200.1091 11714.5784 19649.1575 6228.3313 15890.6915 53756342 nifh Nitrogen Nitrogen fixation NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 19923.5963 6957.9007 5557.2181 29560.3432 9438.3931 10608.4539 9852.3706 13194.2003 16398.4544 1182422.6557 9697.7125 13278.3377 8285.8628 9317.8276 9317.8276 12313.7278 19055.507 11200.6768 14061.5694 88281.881 270695.6871 6302.4401 7534.9545 12087.1037 5868.2983 29657.7119 16209.0732 13219.9715 5934.2643 9686.293 14428.1631 8121.9449 19149.9747 29605348 pcag Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 166814.6672 38002.0621 105235.661 718765.1563 155885.1795 84381.9747 46996.3216 69896.1802 74353.1009 76982.5007 192596.7444 152480.831 2306812.9032 121017.2085 191553.7954 198554.0246 139267.9541 139267.9541 108602.028 180028.4156 71699.3094 137282.3865 262380.1285 123707.9716 71591.9471 91752.7782 125955.1059 170625.7679 245987.4057 93975.4751 157818.4043 92452.1356 108509.5732 86114.7005 166598.5517 966218.1639 341615199 alkk Organic Remediation Others NA Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 12855.7757 50686.3975 15906.2165 6372.8825 19387.559 11012.6608 7203.7454 7157.3215 31770.1981 9972.6824 330458.7458 11581.3279 12385.7725 12359.094 10096.621 10096.621 10349.0285 23358.177 11979.3765 11027.234 19667.5599 187081.1216 42445.305 8396.1027 19518.9285 9312.1173 22711.233 12334.1307 20759.5581 8637.1021 15357.1659 10435.8607 7091.1329 13416.6775 87311919 amyA Carbon Cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 14815.3498 13110.1753 8867.9212 15368.9822 5729.1262 9417.3958 8774.3648 2071.0916 9447.8096 17756.2292 9702.074 241483.8205 25582.0364 10723.427 34813.1746 13949.7241 13949.7241 14095.9759 19018.6314 25857.0408 9440.6372 20226.7482 13924.6359 10802.6438 11018.5058 27933.3701 10349.4346 47329.2704 20536.7828 28529.4422 11279.8062 21160.8779 8247.8226 9733.5614 19900.8922 116067205 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 27953.5014 34124.4803 15142.3863 16583.3846 6463.7688 19947.9086 32503.0561 14668.2986 28631.8851 119266.2563 24191.0209 895455.2902 34513.8299 39789.9905 47446.6022 26313.0111 26313.0111 14533.2431 58528.7491 32574.4412 33772.7663 256241.1178 25581.2486 18488.8511 22547.3871 35773.0893 78575.0261 81271.9732 35841.703 43842.4422 22604.5642 22845.4685 34989.5248 31310.0082 34097.4334 145223764 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 4734.0158 15942.1148 13060.2954 5859.4592 39365.7224 7941.1032 8198.445 29054.9045 18452.7357 18452.7357 5281.4816 11521.2687 6629.4283 5025.3061 6421.9833 4255.1812 9261.7258 10529.1086 25571.9733 34541.2173 7400.4244 22514.4234 4350.5804 4231.9934 9712.7173 2678.8076 5095.0372 146350794 pmoa Carbon Cycling Methane Methane oxidation Methylococcaceae bacterium IT-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 5085.786 9368.0054 3998.8866 3186.3654 2405.5061 3145.4663 3949.6489 56753.3578 5516.0876 2159.6426 2159.6426 3845.5663 6121.6971 5455.4998 7298.0296 8129.6675 2315.4673 5442.0903 2860.646 12553.4579 4783.7611 6103.88 4208.8002 3424.7601 3084.5937 5453.8322 20904457 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 5436.2432 6583.0042 37678.8546 80782.4916 2876.9258 11963.0724 7461.1979 75674.1334 6659.2169 216617.9214 13999.3905 24681.7158 29928.7873 19872.4531 19872.4531 6604.3765 28070.6662 6724.3045 6210.3511 13354.7374 9508.1894 19398.2753 8436.2623 13104.3083 21311.2841 20820.0661 6369.664 9056.9754 8491.7047 3055.2533 259346600 cmci Organic Remediation Aromatics Other aromatics Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 32348.561 639762.9324 5752.1948 8299.1842 6509.9211 18529.7076 38816.7103 16789.992 19499.6502 10503.5046 491369.9597 8872.4925 15716.2496 56544.0546 13230.8688 13230.8688 13039.4756 25890.9768 12756.9624 14509.7023 23449.7788 12616.9562 14907.2529 14477.8273 23010.1148 9906.5533 60988.1452 20879.0848 27760.0279 7626.7416 16829.5654 49025.3714 102960.5887 23029.8555 238792136 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 14644.8796 12068.7961 11365.5931 9680.0609 8180.9203 6319.2569 5750.0793 10226.1064 11174.5705 4688.4634 304197.8923 15705.2921 15933.0835 10609.5257 5417.2541 5417.2541 8492.5615 18386.6735 14568.2166 10575.4655 22490.2342 18355.544 7465.9277 7216.2336 16747.9628 6902.5219 23551.6869 16376.9906 17668.7165 7453.4517 12884.7618 8741.5708 5545.8474 17189.3777 187426290 amyA Carbon Cycling Carbon degradation Starch Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 27775.603 9592.2557 13726.3476 29125.3837 7344.3648 12251.5866 9885.3388 16612.8028 33510.9378 140749.1681 442816.7997 38179.209 15223.1213 9503.863 15267.0866 15267.0866 42535.5645 22432.4939 15318.0246 18012.4022 18403.1872 184081.7134 8785.0733 14554.4733 21217.0568 48450.1297 69426.2283 17744.0492 21354.9243 15087.4077 15921.2339 19014.9138 8615.2071 22325.1318 21648124 amyA Carbon Cycling Carbon degradation Starch Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 11066.6962 4611.6672 13319.0399 11510.9896 2938.6465 2280.7875 7006.7767 10908.6888 5883.4017 120660.5701 8541.8242 8844.8422 6061.2227 5321.6683 5321.6683 6675.586 38459.6229 11512.9427 9331.3924 172777.3791 16448.1149 4431.804 5419.1973 10844.9873 4363.5665 24363.8327 13555.4532 15865.9024 7313.1168 7141.9357 8739.6112 4516.1912 12816.3236 339282945 mnp Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 5155.1253 10377.6091 41050.8709 6349.4859 5578.6355 3947.8603 5512.8226 3600.5382 125564.4559 17367.6097 10191.2538 16152.6574 7501.3257 7501.3257 3429.3778 18560.0489 6106.6345 5021.5816 8120.1058 3483.623 4079.8438 17212.8084 4529.8511 19617.5372 8610.123 18888.972 5140.8728 7465.4771 5172.8825 2693.3787 7195.211 269305905 cellobiase Carbon Cycling Carbon degradation Cellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 14355.0972 13152.6441 23781.2762 7417.6321 12325.7758 15340.0598 15628.6969 31473.6512 15302.803 35034.0823 11542.8569 270923.7794 17122.5299 14344.0133 24740.096 7189.8483 7189.8483 28086.6071 19397.1183 10602.6721 14625.701 15875.9946 13640.7514 8623.4453 8015.455 17956.1096 22935.2191 31634.4638 11231.3321 57354.9553 7315.3871 10868.5511 14065.2602 6946.5503 11646.3953 86572641 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 25002.8862 41119.3715 10674.002 8257.1272 8057.9291 6116.6047 36236.8195 15372.0732 15421.1027 186510.3731 10322.1863 20378.6409 18901.5109 9592.5187 9592.5187 4362.718 31062.3786 10288.5299 17736.8623 32198.8397 17621.2228 448040.2989 8296.6069 11620.6489 51964.8218 54526.2761 33350.9099 15498.4162 10727.8116 16146.1589 32280.2932 6768.6624 14390.1032 353193550 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 30321.6798 19914.8248 10517.4295 10058.527 6538.6771 5555.6468 3104.5616 5298.4733 6828.8277 3175.2364 161888.4441 5671.9687 4923.5773 5000.9847 5030.8129 5030.8129 6275.4445 11892.5777 6380.7881 8822.4201 9030.2979 11454.0372 6270.0772 3644.9292 9893.0692 7429.1921 17333.1902 13659.3785 12109.8151 4130.3121 7694.5545 5857.2871 7936.7306 7804.0624 367469489 Sir Sulfur sulfite reduction NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 135760.6632 55812.7229 16005.5786 18658.4476 16948.412 7740.5986 56511.388 57933.4847 24773.4513 36576.8736 38718.317 556321.0413 20100.4452 108554.1207 57351.3676 60515.1386 60515.1386 42893.0765 43407.6835 72770.501 29806.0784 44574.3339 48890.0672 23036.1431 28189.5649 34957.2047 22605.3268 110423.5179 170434.8989 105062.1487 12726.0433 27930.068 42379.6646 18489.1749 31373.0823 291419131 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 11451.3575 8632.7945 9281.1066 5501.5146 3832.8309 6556.2812 3253.9411 6409.8239 8141.9529 4049.4157 249493.9697 9270.7178 8142.8806 5684.5513 6421.9687 6421.9687 5816.219 11253.8127 8893.5864 7007.9744 10260.8785 12574.6403 4135.7463 6590.0939 12920.6744 5027.7881 20750.1351 8691.8473 10051.3083 5776.4813 6481.9485 7332.9486 5351.2964 10052.1503 327546205 exaa(moxf) Organic Remediation Chlorinated solvents NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 116607.65 21853.4707 19031.784 37722.2931 12084.0899 15605.8587 21264.6806 11309.8635 32249.7774 45510.4445 74373.0407 504841.5228 24455.4831 37923.8831 32623.9353 22089.2065 22089.2065 27668.9878 56472.6055 35194.9299 36357.3536 70432.8895 26747.7985 17492.0736 50109.8159 35555.8345 35479.1097 121669.8589 117372.8104 45456.6278 15760.9111 38481.4411 50894.0204 31465.635 94913.0891 75992408 pcag Organic Remediation Aromatics Other aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 12812.8729 10225.6103 56337.7484 6980.5988 4740.4283 36842.072 41338.0793 11498.2043 137233.9742 8035.0442 8754.8751 7085.2169 4846.3177 4846.3177 20413.2614 28339.2985 6253.5745 7223.2037 14102.6995 17364.3786 12394.1067 7610.8722 10056.8099 4660.7086 16102.9894 10800.4301 12153.8911 5065.6052 6166.5504 6212.4726 18047.0197 20366.9284 160917463 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 36263.4719 7775.0741 53751.2164 373665.0938 65157.2024 248354.167 34382.9201 29698.8423 20916.5869 22060.8858 18589.1316 450154.0963 41286.3319 57790.9674 42601.3953 24198.4233 24198.4233 21543.2866 52178.9414 41642.4167 8782.1353 24778.5538 145329.6984 9518.0237 25620.2408 60067.9669 67156.1896 92326.2888 38140.5598 41594.8468 29138.8317 198780.7599 33597.5483 17956.6901 13658.328 256394993 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 27858.485 11710.0554 13036.1387 7726.0432 23084.9875 7213.466 11431.9699 13859.5466 10450.617 290792.8791 17474.1935 16864.6172 9785.8604 6860.3876 6860.3876 12626.1542 51191.1003 15125.5841 20513.2006 22993.4969 30302.8988 8423.4023 8289.2785 20687.5117 8865.3515 30204.5511 16221.1122 19340.5384 7921.6733 13437.9283 12902.4597 10397.5456 18185.5103 75992426 dxna Organic Remediation Aromatics Heterocyclic aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 13174.0849 39259.2305 5689.8099 12604.5035 5781.8985 7587.4633 3193.6173 10705.2916 5208.417 3689.6904 80619.0416 5684.4066 39973.0468 16451.9847 8547.1817 8547.1817 4626.9739 13300.9431 8810.7217 12996.609 7409.1487 16134.5886 3456.7149 6493.5545 11984.1647 6777.3603 19569.618 9126.3307 4315.0993 5385.047 8634.2123 6199.28 26636.8745 150014764 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 33468.6962 14168.6145 23959.8129 20485.8557 10366.1718 127722.2009 67782.7502 121828.5368 21334.7539 31225.8504 37272.478 222772.3076 44696.8923 198811.1911 52459.8448 29807.8137 29807.8137 113456.3033 58112.516 31942.7781 26223.7042 31263.468 12250.6539 34486.8366 25402.8593 85472.805 19968.0702 64116.6002 45321.6526 33106.1057 72258.0602 62195.4283 57087.297 10089.5491 94106.9822 387843710 chnb Organic Remediation Other Hydrocarbons NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 4210.8067 2650.0486 3633.1202 2707.1534 5055.2959 10227.6995 333739060 cellobiase Carbon Cycling Carbon degradation Cellulose Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 10473.4304 25245.2545 6298.9545 3418.4861 3550.4568 5270.2207 4689.8399 151312.2044 9792.1281 30039.9188 20640.4569 13560.088 13560.088 60301.0513 8018.0811 7630.3654 10423.0558 4464.4443 4214.9789 6448.849 2355.1115 11754.3089 7703.5124 2205.8399 3765.9623 354467.3767 6618.27 275154.0998 32261764 nrfa Nitrogen Dissimilatory N reduction NA Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 9395.097 7288.0252 4187.7922 6625.7755 45807.2091 5536.7135 53536.7951 5671.9193 15321.2586 22405.3549 496292.0988 9942.9294 9272.5927 11603.272 5219.9028 5219.9028 10956.9464 24734.6164 10345.8147 57729.6717 25037.2067 14580.663 9995.0092 15510.2089 34025.5437 5950.4233 6701.416 6150.3876 16759.9461 7233.72 12559.4817 19357.4884 7565.0732 9968.6507 151575648 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 6091.513 8549.6323 3216.568 4327.33975 5546.8977 2910.5052 2788.93875 5030.4862 4620.6083 2460.5153 3285.3068 324999966 limeh Carbon Cycling Carbon degradation Terpenes Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 6280.8813 4287.5687 3505.3484 7329.4946 5123.024 6722.9006 22461.4455 22461.4455 8259.2612 13333.2446 4212.3653 15300.881 4555.7905 5291.2962 10934.6926 11413.7836 12713.431 6834.4634 6488.8977 5439.758 25208.9474 238794181 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 5129.9745 6367.4842 7088.8648 9108.6346 5908.7278 9266.5035 4854.5303 66971.3226 5304.6303 7359.9777 4729.3698 8273.6121 9895.1317 2996.9127 7290.1952 2428.8634 15718.9631 10303.8761 4695.141 5216.0636 3933.291 10442739 pcag Organic Remediation Aromatics Other aromatics Pseudomonas sp. IMT40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7906.2841 6521.4015 31289.5429 23340.7267 4940.189 4940.189 7117.7484 8000.1316 2666.4073 11389.8696 3009.1843 2755.2041 300586215 TIM Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 196255.5771 86681.7007 175826.0057 252948.9489 179377.1693 53665.0353 81430.9427 135046.0701 48793.247 101009.9331 163662.1524 105448.73 4557580.4519 162065.575 134666.7232 132082.7151 142970.3991 142970.3991 61719.3365 163509.9161 78509.9502 105244.4315 176237.8149 148347.5506 87312.0015 65545.6686 141579.4952 65980.2486 496154.1977 57792.0516 179843.5074 108912.8626 73032.4019 78177.7703 57249.6201 134465.348 145306288 mer Metal Homeostasis Mercury Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 41930.0344 59629.326 24245.3125 15065.7259 34795.2043 5115.9051 18114.3857 4349.8071 7460.8636 14158.0949 13776.2817 345674.8964 11055.7309 12764.0505 43304.8318 11509.2986 11509.2986 33117.8419 20486.2661 15043.84 10416.24 15152.8558 31981.0196 12155.1484 15590.4085 18592.9839 16126.2436 37172.7944 21026.1762 21654.5835 9997.0779 11184.8494 24960.1286 8692.8689 21806.8522 297561221 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 151051.1302 13228.9152 93378.7462 78632.9877 111204.5173 47533.1045 377085.7287 197295.62 122474.7237 82418.8806 183264.794 135798.2644 4382405.5172 162009.1643 117653.2932 249814.4801 164682.9432 164682.9432 102779.2064 168832.3158 94796.5048 170154.6396 299686.5573 107011.1556 97565.9428 111615.1266 126370.5369 75748.8352 196717.4769 180624.1411 130414.4052 51818.7658 103504.0867 135289.7351 84150.4829 407087.1324 359818547 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 9790.8259 8911.8185 6256.8676 7427.8901 3319.7171 6904.1255 11332.4785 5240.4878 166773.8453 11687.1772 6510.5389 5190.6863 4196.2323 4196.2323 5252.4657 11983.3603 8520.5217 7042.9053 9419.1635 11012.5618 3480.3921 5035.0874 13877.9214 6655.5153 14509.2961 7831.3395 13979.866 5441.2785 5978.0714 8129.0465 4968.7144 15985.62 237903796 endochitinase Carbon Cycling Carbon degradation Chitin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 657803.8331 28079.0906 394859.0876 209684.2513 195301.9029 68083.8434 164859.0306 202450.8099 192039.161 142801.4855 385174.7213 277841.8046 5462655.7088 299442.4247 295343.1454 1055526.3568 422513.7341 422513.7341 132703.0758 280448.5073 117170.6984 453961.6281 219863.5521 199507.2433 86211.522 195702.2812 216719.9782 129537.6317 347867.0039 150010.6772 344160.0083 171787.6335 174915.0502 189744.4959 83347.3905 282944.4235 385737666 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19958.5226 37571.6292 43985.4544 9571.3553 4657.8848 9298.0173 13600.0442 17819.0955 165346.5988 20026.6112 19831.4417 12290.0535 4951.8581 4951.8581 14004.1294 22999.8474 9273.0638 13164.3631 16288.6578 24170.3475 67691.3063 19699.3369 12261.9542 9310.4478 41213.8226 6787.8452 33552.5032 17073.1345 13242.2316 17544.0592 16673.3691 26913.0833 50954092 amyA Carbon Cycling Carbon degradation Starch Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 35333.3056 36569.3921 24074.209 39104.0165 104574.3683 169977.1582 11533.1963 42482.2346 32231.1673 27548.9936 35651.9787 69863.847 673176.5182 41070.4218 162721.3615 59584.4035 49943.6994 49943.6994 32420.7381 95378.5432 29237.9028 26908.0386 22379.6983 42303.3772 10938.0494 33812.7438 172678.1626 32925.8299 53768.1441 54885.2823 65141.0281 20082.4622 35896.382 48366.5569 28993.4918 20170.1491 95025937 cutinase Carbon Cycling Carbon degradation Cutin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 4331.1808 5250.8625 3816.6457 192764432 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4166.2288 4056.9739 9070.748 3386.0857 89470.0122 5759.5464 2742.872 7807.4315 5350.9112 5147.147 2742.5615 6095.7413 2055.6619 2609.9746 3016.4163 2156.7633 4308.2426 296426277 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8689.9571 3536.1007 3860.258 7416.2784 3931.3957 5150.0655 127247.9012 8843.883 8793.6999 9077.7334 3754.9381 3754.9381 23282.2865 12190.0644 7585.878 22427.3672 17395.3847 6668.2379 13774.4915 5226.5528 23458.7043 4950.5626 13433.5026 14814.8193 13175.9412 4354.0987 6784.4458 7092.4665 10235.2323 6736.1039 157322525 amyA Carbon Cycling Carbon degradation Starch Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 21142.6873 7958.4356 367345.6711 4993.0507 7938.6435 7748.211 6036.4447 8333.9941 9743.0979 12774.8632 246358.1477 11486.8272 13119.466 7931.2672 7022.165 7022.165 7138.9306 11237.8683 9997.6111 21579.694 16083.9656 31595.884 8055.9418 5719.2272 16898.8547 4562.471 66150.0337 30638.2316 40900.268 9900.4724 7306.8929 6853.5553 5220.1557 33244.9292 157369292 amyA Carbon Cycling Carbon degradation Starch Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 6695.7865 9551.6809 5114.9086 3101.0148 4328.9149 6440.8139 7957.1667 4141.9418 7646.5308 8683.5531 8844.7561 4822.3137 4724.7221 4724.7221 5489.517 12054.451 9612.7896 10813.7337 10772.1189 11662.8566 4338.8803 5417.8792 12432.8522 5017.3845 19363.3585 11499.3047 20283.467 4487.0052 6135.4523 6998.2986 3986.9058 13958.0084 225075558 ppk Phosphorus Polyphosphate synthesis NA Neisseria flavescens NRL30031/H210 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria flavescens; 57172.3783 72776.4318 24280.3686 31077.6742 31743.1789 74658.5307 32121.3647 62460.5806 29346.0462 49176.9995 29034.0261 648164.175 37117.8027 138475.5626 103001.8872 39183.5762 39183.5762 17211.6288 82291.8052 57826.4742 62210.1169 72720.1289 113739.2618 26606.9266 61670.8906 46704.7753 49525.0643 186970.0834 103014.4561 67648.9815 29827.798 38247.8968 127847.8586 27670.4426 39671.7275 224365409 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5080.0702 4833.6324 4893.2875 4811.2878 145223959 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 19260.9171 45399.7577 10290.2751 40901.3192 12598.34 46326.3459 38877.1485 13120.2787 18682.9978 36699.9709 24442.1252 584042.2473 26118.8511 25595.6735 27263.3793 17853.7607 17853.7607 15611.4913 27519.9981 37069.8673 31816.1514 53504.0176 31644.7813 13375.4369 19023.5483 65303.3484 19516.1196 64443.4359 27506.0834 46784.6729 25127.8048 38780.0417 76884.4165 25205.5815 103186.0189 358458441 proO Organic Remediation Aromatics Other aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 27973.1957 23353.254 10781.4935 3144.2386 3945.9818 12130.7611 11231.4998 7455.4006 509858.266 14904.0927 58507.4184 10270.2765 7829.5332 7829.5332 7020.5973 73131.3698 11253.1681 7430.6389 35049.93 122094.0698 10272.93 17937.8836 17126.0489 6956.0158 127148.4688 14922.1244 40966.2867 18519.533 12297.4594 10784.2311 4329.636 10379.4696 254252495 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 4143.4023 5697.5197 2536.9894 4454.5022 3916.9507 6621.4279 4345.8891 8671.3598 2384.6056 8294.0378 5231.629 6355.6584 2884.4545 5093.2837 4605.0579 387889123 bend Organic Remediation Aromatics Aromatic carboxylic acid Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 8945.3181 2055.6344 3113.1283 4350.3582 5123.1978 5815.2332 3473.7385 3473.7385 5654.4309 2633.0628 2820.9723 4471.4128 1828.2794 3068.8041 5850.0262 93353565 phn Organic Remediation Herbicides related compound NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6535.0746 8747.5957 2275.6683 5795.877 9535.7962 10635.9877 8072.4501 59704.2825 4142.5912 5604.6372 8716.593 3932.4578 3932.4578 5888.7002 4550.5741 26668.1044 8097.5557 6024.33 4278.2807 6266.5413 5445.6341 8557.6089 5570.6402 6597.9087 3824.6442 4804.8901 3959.933 3435.6031 11841.1967 336025336 phn Organic Remediation Herbicides related compound NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 50285.9989 7191.8999 10454.0296 6509.5065 9222.2469 5888.4567 15681.168 8188.7342 11088.2425 145518.4624 18064.02 22324.3108 10292.3322 10656.3631 10656.3631 28984.4151 20203.3108 10738.5486 65979.7241 17397.9256 8136.4262 8711.8591 8829.1186 7385.8543 12955.8663 70269.5473 9221.6576 59683.5868 15516.8992 20675.0712 25293.466 5792.7383 11076.8347 318062697 ppx Phosphorus Polyphosphate degradation NA Streptomyces sp. SA3_actG superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 12064.3701 5930.3094 9580.2737 11745.9212 8286.7723 16158.4864 82118.3084 12816.7236 19292.3568 9817.9096 291645.4109 13187.4014 17232.9529 26939.6498 15035.5334 15035.5334 9739.3836 14263.0422 9556.0538 9715.1811 16742.6633 15033.1924 6311.0385 8066.4733 17521.5063 6064.2613 26778.6605 18290.1895 15123.6986 6246.8266 5802.4983 17722.7803 4745.6313 10189.2898 225575750 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 8081.2207 21667.3351 7046.7342 5690.1468 3271.4824 10375.4216 83362.0998 25781.76 241804.2983 8525.038 7879.7993 50351.548 2989.5463 2989.5463 4041.2984 16473.9012 6398.9773 14641.9159 7813.2936 33188.2219 4503.9041 5724.0878 9345.1891 8339.1635 23190.1875 18301.4695 13480.6284 4951.828 36313.1199 21140.8607 4235.7908 9608.4168 110679695 gdh Nitrogen Ammonification NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8217.9879 4781.1212 4827.7751 2453.4194 4971.1183 5743.294 2968.6472 102530.3473 10580.5036 5954.7749 2664.9631 2664.9631 6884.3789 14220.2538 7683.269 6566.9993 7218.3053 5147.4306 3653.8753 4480.8714 8364.2103 7517.2688 20122.0779 5390.9963 9447.0859 3909.7601 5670.1439 6027.45 5518.3438 11161.8665 119494387 lactase_fungi Carbon Cycling Carbon degradation Lactose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 6757.5789 2792.2075 23492827 badh Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 51083.6416 18968.2553 28804.1899 41276.0838 44879.6491 20806.2766 17623.4881 22973.0012 51335.5659 43007.9608 61661.3597 25974.5896 886879.777 70329.059 37443.2531 75179.0233 26578.5823 26578.5823 37679.9539 48445.1898 26406.6184 28735.8938 41558.279 36830.3869 36212.7077 29039.7138 48280.9415 15795.6928 52878.2016 23893.9104 35460.7716 183172.2187 23987.8405 28870.9198 17751.1717 42971.2082 311108701 xylg Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 8489.9643 31225.3516 26439.4916 3361.0394 12002.1053 5621.4572 4821.9835 18785.627 79375.3041 6198.8184 13525.9153 8926.6726 11295.532 11295.532 3681.1682 15229.8927 4460.7304 62141.0718 4568.0354 5210.1779 7687.8899 9225.6999 27820.9495 9921.8392 20333.5347 16099.3406 12404.0317 4996.6784 12908.552 10927.1849 4777.5955 19784.7176 117984482 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 11764.8319 5594.1417 5656.6164 25651.6347 5123.6219 5285.8863 3595.8269 2362.7193 3877.8297 8965.7114 4145.8376 215975.7963 4952.1928 55287.9874 33786.1264 4492.1861 4492.1861 6027.9503 10012.5444 7544.7548 6085.0648 5502.2279 4928.9332 2906.607 3696.8699 13817.2862 3552.2209 13023.1388 14042.0436 24532.4051 5298.3892 4663.3189 4317.5203 3345.4762 5919.08 392373240 exaa(moxf) Organic Remediation Chlorinated solvents NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 46474.6202 21997.3395 25164.4057 40411.793 27597.5178 10831.5145 25603.038 25669.8773 19858.3893 42640.3751 49239.1429 26753.0595 624393.5429 45771.5491 58142.9052 31727.4973 22675.9138 22675.9138 32797.5679 50938.0857 41066.2529 45083.3435 59440.7418 41952.7564 46412.3496 24985.4757 134247.9598 26054.0981 77295.7705 31068.3735 45932.7437 54125.3986 58578.0901 28879.2829 21124.459 92831.5328 160864145 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 52173.2998 82230.5067 6441.1851 13439.3887 12250.6109 13421.1046 37764.7899 14577.0052 38284.6043 48393.8567 71292.1968 418390.6272 32960.8956 30035.7797 27899.4623 34604.5166 34604.5166 19478.4271 124858.6702 22264.313 33515.4902 58621.1217 44016.7302 14921.9207 36590.5496 30423.9128 34515.2538 80942.3817 52684.9212 50653.2497 9605.8085 36607.407 34894.396 20667.2552 25660.7311 154253782 chnd Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 11148.4855 5171.409 4644.1898 6026.1009 3604.6354 13924.6094 9755.165 10052.9179 19726.1797 208672.0672 7769.3877 8647.7807 10822.4972 5844.7972 5844.7972 6260.0611 24151.7286 10364.0707 41634.0539 12061.1155 7838.293 7087.727 10657.2878 6855.4886 22217.5337 15722.7104 9418.4711 9713.3669 4749.2277 9023.6634 26950.0436 4304.5195 7937.4977 330820405 nfsa_2 Organic Remediation Aromatics Nitoaromatics Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 5012.9902 5466.0056 2411.0731 11903.1522 49623.5191 3862.38 6887.9203 4209.3824 2247.228 2247.228 3655.1384 7343.9691 4597.5073 6418.376 13615.5635 5781.97 2233.7285 2733.9459 2548.0213 11957.688 7162.9452 8477.3528 6641.6418 2941.3028 5241.1063 2485.7121 12441.9584 288895443 tktA Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 22698.3094 16859.1535 40981.5617 25498.5376 10193.5081 19117.0412 22225.926 6933.741 19579.0581 31987.9299 38876.1463 816670.0782 29795.6958 23153.2724 21230.9983 14473.6496 14473.6496 13625.0785 39817.0208 16322.4763 12830.7614 18553.6277 85792.6038 34048.7824 16512.4824 29646.1942 37932.2611 91411.9973 31364.2753 40233.6468 48699.7612 25274.0591 33288.2235 27122.2263 70816.748 119410920 phytase Phosphorus Phytic acid hydrolysis NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 8435.8917 6097.0892 5445.8341 7309.4506 2933.1377 71884.2714 6718.2736 15584.9849 5304.5383 3012.2731 3012.2731 3203.8206 7484.731 5297.0952 5826.1853 6716.2966 4687.0318 2172.7967 8723.7584 3049.3604 8258.8546 5420.0214 10404.355 6463.5568 3172.2871 4016.4696 2880.3746 5124.4008 162072798 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6708.8602 7377.2219 2876.9103 75763.2514 8187.2622 5508.3606 36620.8834 3950.4585 3308.5054 11546.9148 4214.7311 6384.2625 1927.7845 4697.0628 3316.2319 5847.2974 149142732 bend Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 13688.1581 66203.6916 8961.1519 28783.8108 15484.0693 11164.1492 29522.8118 7442.8625 19139.0889 22865.2604 18599.1408 143470.0429 20302.5748 23262.6524 101813.227 19948.6957 19948.6957 7575.1196 37192.1994 17731.7696 19677.2315 9370.0604 19984.876 9018.9728 9009.9122 18880.4672 12948.8259 54285.0869 36975.7024 19701.7231 25285.3672 10933.4691 16008.39 16663.8523 18418.6493 83859960 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 8793.6486 1969801.6894 3714.4589 77102.624 8223.841 5756.7101 5756.7101 2873.3236 3877.6323 4303.5326 2678.9665 2357.6337 118306.2476 5510.1033 2864.1377 385666689 ppx Phosphorus Polyphosphate degradation NA Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 66523.7317 39184.6982 44384.2452 38949.8039 18774.9158 48863.8351 724325.8841 64300.4647 65501.4345 167050.391 75886.7653 745498.0221 65187.9002 245630.493 56668.3602 300671.1284 300671.1284 59712.2358 91422.4892 29682.6121 63417.5543 149961.1753 72973.5769 60701.1525 59264.2922 185820.0383 49151.8976 183253.4933 184664.4089 87577.7897 70308.7201 86670.009 113128.3903 54422.1569 120725.9066 145595477 cellobiase Carbon Cycling Carbon degradation Cellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 4542.3367 5473.7892 5479.7527 4491.7533 77474.0258 15474.3718 2016.7418 2016.7418 7783.4868 5499.7663 5239.1279 3784.7721 6145.8181 154083454 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 877703.058 99083341 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 34293.1949 77590.0018 11717.7817 61945.0589 33708.7121 11318.0649 26403.604 19491.5566 125022.018 22415.8119 12222.9405 5598.9375 16357.0014 16357.0014 19782.2587 71831.4278 25795.5403 11616.9887 132553.6063 79576.7176 11332.4556 10424.7612 19521.4342 13512.3718 36695.6829 55741.2388 34059.7722 9501.1402 16848.5642 20720.6008 33351.0761 23640.5345 169857040 nagg Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5066.6756 7924.4261 6448.8834 3756.3143 2871.6822 6539.4859 6154.5881 3330.7677 149189.2522 10024.4329 5524.0953 4130.3173 3244.6025 3244.6025 5652.3028 9226.6529 8656.9173 8111.25 11511.0762 9065.5056 3461.3081 3455.7599 8933.5465 3719.9395 14285.118 4806.5455 8567.7387 4449.7775 4585.823 5571.5549 3696.8961 8500.2786 62131454 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 21696.9021 9043.5421 20940.7903 15051.6242 74831.4215 14511.2392 6739.3727 8896.1506 31694.2414 10179.7124 139578.6251 9241.5348 17385.5469 19757.4619 17787.1555 17787.1555 13604.8356 27649.6649 10408.9433 9461.0437 51306.5649 5582.3221 5291.4455 15613.9041 35054.4389 11468.8569 25167.375 23184.3285 18487.1374 26512.7858 12924.7399 17487.9558 13885.0833 33178.2203 160428223 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 6391.8758 6641.386 5527.3949 4035.7706 2527.9551 3267.9267 3928.4988 7068.7856 5734.0979 7266.5434 4963.3806 5585.0938 2934.0626 2067.3123 326950263 amyA Carbon Cycling Carbon degradation Starch Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 4464.7763 38607.9842 2381.8841 60127.1405 3668.6427 4457.9009 4457.9009 4331.6455 3723.5313 4307.3025 5076.113 3794.346 5879.8052 8013.37 4574.4274 3055.0673 8824.1033 302847052 mg_chelatase Secondary metabolism Pigments Chlorophyll Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 149172.7532 6226.14 7215.4875 6377.1788 5085.9213 11833.4936 7194.0957 6417.9509 16607.2419 13380.1182 37197.0868 368621.7099 11555.3505 11645.2758 14647.7179 9941.6546 9941.6546 8471.4986 26248.0286 12515.3419 24742.5276 14456.486 42578.595 427306.4402 8434.8359 19881.9393 10048.7898 41435.7393 8582.1022 17832.0956 21951.2261 8524.3999 14380.2053 10835.7604 115190.5784 379763494 amyA Carbon Cycling Carbon degradation Starch Mycobacterium intracellulare MOTT-64 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 16932.7206 321090.8544 41524.8082 107325.9103 39657.0621 191747.8232 24110.4152 14557.9144 26068.3612 32395.1581 23647.553 669145.1846 93994.3301 62431.8531 47691.0107 45461.1669 45461.1669 16719.4373 37942.3376 28704.0209 35062.2538 34811.9677 23141.4324 12365.0323 24470.6865 49413.6895 13283.5237 265695.4104 37669.6597 41558.5079 20042.9634 32721.0835 26861.4131 16992.4877 19169.5866 295825494 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 334362.0381 809172.2011 38766.2681 110973.6422 121729.4712 83900.4692 118762.7503 65704.4113 93910.7126 131976.6258 97942.264 2032294.2939 218500.8814 206490.1257 307999.475 185035.9683 185035.9683 77104.9339 205856.2933 102373.3382 344333.7505 170380.699 125247.1894 154805.9908 103664.0136 167745.7467 109299.6396 367643.2147 160637.7497 154677.3214 75046.1904 147288.4196 143538.7434 102244.6231 102528.6868 209884321 SoxC Sulfur Sulfur Oxidation NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 53469.0813 55786.0033 422098.9975 114087.5054 112380.1637 37192.4279 36988.7769 59672.3231 51582.7014 124708.7452 91004.7479 48955.6738 2372310.9808 96989.3209 76993.5456 87519.9974 72842.832 72842.832 60833.1212 69762.5583 91356.6851 199314.1706 110442.3646 843435.756 36161.6496 80905.1344 121016.9787 57346.1104 103923.9461 79442.2817 81648.117 42448.7204 50785.9893 61642.7561 24353.6075 117314.0463 398037641 badh Organic Remediation Aromatics Other aromatics Caulobacter sp. AP07 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 5703.7607 13946.4747 2513.523 3785.7697 10687.6242 3562.8287 11627.7926 98614.276 3894.1119 53481.7492 4006.1463 3460.4542 3460.4542 37138.373 8037.2809 4506.9086 8597.9791 5206.5838 8794.517 3071.0055 4490.1597 11080.2516 2866.03 2755.0764 6733.545 8497.5304 26382.2648 4607.8249 19667.4239 33631.9663 24591.951 340346444 nrfa Nitrogen Dissimilatory N reduction NA Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 4854.9377 7111.205 27223.0096 4201.0492 8434.6245 10091.0709 10469.3952 10469.3952 8481.5733 4381.6366 6683.1815 2319.6991 6687.7687 8315.6071 11637.3766 5780.0946 2662.1774 3117.5117 5228.1446 2231.3966 110283398 xlnd Organic Remediation Aromatics Other aromatics Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 21535.174 6455.2662 4577.2427 2396.6757 184299.9696 8570.0111 4388.0877 81703.5937 6424.5564 5154.9769 8039.5411 7279.4695 7279.4695 5968.5095 9814.8975 5326.3677 5424.8587 8577.6805 13043.1831 5669.0849 7104.0234 19215.9946 28562.0011 6061.3317 8230.8108 3354.9957 3376.2169 5975.4934 2517.8289 56479032 narg Nitrogen Denitrification NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 451254.9247 14885.9883 16933.4308 17993.7067 58101.999 18874.3476 10260.12 35890.2766 15076.8744 82525.3394 40121.6869 818086.7242 12811.1225 22817.5157 426735.4138 63161.5066 63161.5066 25591.3465 28069.8058 102974.7243 41899.0951 52121.3187 19155.6094 18077.7685 11880.9278 31507.5617 28651.4291 122496.9599 27175.7868 46856.3854 46855.7439 58334.772 24586.9133 41385.6113 19535.0838 68164658 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5831.301 193219.5576 6541.7996 8009.6353 4483.3384 4047.9208 5304.6885 5481.418 2209.4022 115443316 axe Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 16052.8963 17317.0488 4488.7603 5935.8626 4824.0185 36039.9368 2525.2011 10360.9289 27965.239 11456.1497 296609.2057 22504.8453 26820.461 41539.0376 10050.6996 10050.6996 3134.4591 17489.8678 9169.7052 8027.6455 9070.8598 12210.532 13640.5588 6746.6502 14129.9923 15217.142 34013.2042 22448.7472 7130.8695 22547.4259 17880.2019 12341.5271 6405.2076 313680999 amyA Carbon Cycling Carbon degradation Starch Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 9821.044 9619.2054 7933.0541 6479.3721 4277.8292 8529.8832 12910.0197 5228.5343 223793.1687 12260.1812 10336.4487 6825.9917 4972.4608 4972.4608 8995.6023 17345.2301 9493.7658 9383.0981 9961.3029 14245.8054 6093.0182 6696.5657 12353.1386 6492.6323 26349.9523 11989.2159 14475.8317 5393.9267 7761.1041 10015.3334 5992.556 15692.6851 157285722 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 12807.3846 4381.2239 2340.3438 2478.2246 9261.4136 36365.6292 42582.1492 97761.551 5161.9407 7042.6471 11503.6387 7740.069 7740.069 3810.3732 18039.1898 5689.6194 5376.2718 4750.5272 6573.0165 5366.2988 7712.3129 6742.0183 17496.6677 11018.4263 10530.5502 3070.4684 9428.9133 8380.531 6006.7514 5546.9629 398870681 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 27697.7849 11198.5466 20903.6214 10629.0911 10160.3483 6437.7748 14384.7059 21485.4223 18733.5349 678177.8527 18623.3836 18416.9812 29928.9213 12834.0569 12834.0569 95819.9697 31860.1631 17599.6504 41458.8716 30398.2639 82852.5563 23378.2606 16448.4893 62823.141 33749.371 86834.391 23597.5137 30281.9501 11264.8157 17006.5341 38910.4083 11724.8993 42118.5521 13423933 badh Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 13743.1477 14601.5865 8752.1698 21754.4432 9083.7449 13384.9647 8546.0761 9329.1325 49726.2178 18187.1908 16093.7375 10603.813 340944.4458 18898.3633 15032.0928 14899.4344 8428.619 8428.619 40044.45 68009.4898 10663.2249 33683.4671 15055.0851 24954.5905 20170.7767 8016.6059 27323.6314 6765.1581 35931.8346 15039.2916 16399.1361 8734.0854 69155.1472 10941.3006 9133.1259 45104.676 116742196 endochitinase Carbon Cycling Carbon degradation Chitin Listeria welshimeri serovar 6b str. SLCC5334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria welshimeri; 16019.2873 13203.3953 11039.6937 15632.9385 14466.7717 12811.9292 24688.2436 14797.8087 10492.6533 12553.9807 16389.6961 7629.2049 354081.5585 18743.5181 23921.2445 12469.252 10341.6569 10341.6569 7870.0991 22069.4974 20747.9134 20250.223 19898.3167 16021.8174 8069.1334 8685.0711 25701.6359 12855.6077 43354.3816 17680.1274 21887.1429 9439.5637 11458.0862 11181.5959 10682.9166 25719.2599 350560259 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 119450.168 48245.099 279309.38 102315.5193 64669.5977 27231.1247 51196.3035 297438.2111 26662.9012 293113.6575 160206.3024 172462.4203 1862770.6088 136559.2315 234130.0296 166731.2617 125307.657 125307.657 91659.7769 184226.7812 56234.2192 71156.7921 73527.5889 368347.9764 73360.6313 173785.3204 119082.104 93496.6509 335407.6559 63047.9193 129315.7205 42881.6133 77291.4589 87044.0153 79224.5148 142404.2753 99081800 PRI Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5570.2749 2201.6786 3916.9223 4413.4203 114524.3374 4692.0123 4809.8884 2205.0692 2205.0692 2511.2508 10987.8492 4287.6545 4889.678 4227.8291 4849.9006 68189.0425 3790.7161 7496.5126 10893.0689 5449.9189 63081.9274 2793.6207 3658.9514 2198.6689 6647.8687 325066972 amyA Carbon Cycling Carbon degradation Starch Actinomyces oris K20 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces oris; 7806.9633 10851.6943 32200.7049 7142.094 10764.6051 5245.5928 7917.9957 19770.267 179427.9991 10324.7699 9873.2666 19303.7771 12183.75 12183.75 7070.7667 12087.5445 7858.1963 4823.4174 11500.7025 7801.9329 4262.7664 7608.7556 15217.1553 5103.5562 22961.1546 15473.0489 15953.1509 5749.6756 8336.2925 10708.2498 3838.3784 6008.5009 84665743 ppx Phosphorus Polyphosphate degradation NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 18099.9777 6031.0444 11831.3216 100652.0957 6281.2668 10976.2647 43442.4609 6512.0268 105504.1931 14892.1281 17119.8115 818531.1819 18847.7743 14141.4328 9734.9313 31998.1395 31998.1395 10544.8 28484.9923 17819.4067 18441.9749 23286.9846 15571.5878 37876.2064 11968.319 23200.7323 23401.7197 54798.1828 18450.5257 30599.8183 12011.1051 64147.4178 33418.141 11052.4017 22619.3147 21229834 poba Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 18680.771 9585.2639 4721.4514 19556.1728 3660.6539 4540.3087 25273.4752 15915.4851 123131.7568 5443.1238 7222.5691 5662.0262 5662.0262 4424.7449 12659.5745 7701.3775 5942.9791 6556.2401 2837.7105 8775.2878 11038.0011 12865.8056 16890.6867 11188.5881 15910.8501 4835.6605 24731.398 8391.1512 4302.7058 11510.0704 212703859 dsra Sulfur sulfite reduction NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 7038.6304 6040.8881 5790.6794 13055.1175 4264.8715 4445.6795 5262.721 6795.1076 8325.4541 3548.3255 135622.573 5439.4945 5753.564 6633.2258 2772.2091 2772.2091 3794.8755 11493.7682 7525.0845 6118.5038 6743.5407 5957.399 3822.1218 5456.8546 11099.6961 4950.5668 17397.1827 4928.7139 8992.9113 3488.8871 6142.8459 7168.2799 5143.529 8446.0597 171991174 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 6209.8912 2563.8017 7265.0673 4265.6089 6733.7892 3247.6924 112970.6391 3988.2539 4924.0088 2500.6863 2500.6863 3365.4863 9067.1398 5516.9715 4138.7636 4946.4888 5189.819 2821.2166 2809.8759 8421.9729 2384.6095 9664.1175 4799.4189 5574.6197 2750.1922 2693.9075 4301.3881 2226.5752 5763.2902 138754346 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 7172.0495 694956.1414 190338.3909 2804.3472 5754.4363 8071.3285 3589.2003 3033.2487 107761.4828 5001.0044 5426.1404 13281.4366 4837.0678 4837.0678 2387.0889 6735.6695 10440.7711 4095.4112 6309.7337 10567.5772 7140.8043 3952.4743 2765.6605 13258.3293 4962.0773 374321583 phytase Phosphorus Phytic acid hydrolysis NA Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 16791.2321 9804.9811 5096.5281 22150.382 6755.8222 5857.4536 9101.4781 5400.8115 6666.9783 3244.372 93390.9747 6507.6313 8074.0896 4982.3486 4125.4034 4125.4034 5981.2893 15240.5694 6647.0459 7413.005 7407.0159 7225.7787 4475.4801 4444.6177 10273.6044 4038.6973 18084.2798 10254.8104 12315.4716 2729.0971 5824.6184 6689.0364 5288.3382 6169.1866 242217049 ara Carbon Cycling Carbon degradation Hemicellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 41713.0482 764315.8928 12384.5056 15205.6087 31759.0378 16263.4605 276894.0868 13784.1862 109152.2446 14158.0975 307513.2494 27839.5972 39445.7521 39445.7521 59874.3608 18631.3345 28141.1283 7946.9847 9820.676 13451.8516 22550.0383 16979.9903 315438.3122 38018.9812 32100.12 6441.68215 28133.4978 8925.6578 11820.1956 28004.2533 385738364 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 18113.5382 8187.2531 15516.148 10904.25 7695.6571 8048.3196 10602.2298 10053.8829 10624.3133 15372.1321 13147.0932 201411.2535 13616.0422 14430.2173 15322.6385 8238.1174 8238.1174 8543.0867 19678.3956 15991.357 72810.7346 29994.1577 24058.3875 5848.4982 10671.5369 17591.9132 14966.9033 31307.0317 12101.6636 17160.044 6874.9454 7905.0387 13813.677 8008.9752 12248.6236 162568557 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10797.7708 5564.2599 5963.6223 14644.2731 4684.4189 4210.653 3436.0199 6472.4128 7141.6327 3409.6683 154020.8886 11282.6871 52829.3826 4299.2459 5443.8265 5443.8265 5343.1799 13174.4511 8305.8629 9177.0047 9957.8517 10164.3914 4334.412 4702.9177 9120.4362 3710.907 15122.2345 4779.2511 9279.7035 5412.4603 4719.5996 6060.7697 5821.5399 12854.1726 153962904 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 7233.4705 7449.3901 11162.8683 5993.8226 5943.6077 4695.9914 13152.8848 15281.6492 3131.4216 73027.3092 10093.6183 8284.627 10106.1191 10106.1191 4600.3699 9721.3148 5071.1235 4307.126 4939.9492 6367.0206 3852.8574 6600.7975 7731.2848 4684.9476 19302.9793 4938.344 9946.9252 14432.72 5457.2074 6853.2301 3327.3552 6688.4592 313147519 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 15071.9621 9729.1605 8296.4727 5116.1865 29075.8975 11807.7131 4532.1622 11237.9194 22285.2924 9837.4301 364377.4853 14918.3903 11817.6526 18755.9433 10910.8235 10910.8235 8790.8904 17699.3226 17725.8447 15737.9152 20147.2077 21133.8839 8141.3121 7878.5727 16635.5234 10113.161 35194.8301 18422.2812 19487.0731 8401.674 12034.8148 12124.6843 8436.9539 27175.0571 121611520 pcpe Organic Remediation Herbicides related compound NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 4056.69 46174.7233 5444.9983 5446.8337 2888.0998 13687.1314 8842.9091 5805.3326 7490.4391 125922.1977 3970.8799 8348.9374 24877.2691 4328.8485 4328.8485 3432.3746 10833.8257 9537.3044 7099.4983 7886.467 5274.248 3552.8141 6764.3275 3916.8958 11482.4967 7060.5705 3596.4378 4939.8416 6465.4603 2170.8194 12440.2543 270333098 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 98046.8563 67302.3118 21303.7164 41466.5679 9378.1823 195808.8692 48310.6564 61690.0808 259026.7891 60871.1984 68155.6837 846212.4102 167775.2431 64766.2906 42832.0505 42633.3933 42633.3933 57611.514 78802.0776 35694.979 236288.0117 86920.714 38219.371 87969.4762 42885.4752 114654.3132 95635.7828 130447.3587 76823.7739 86332.2935 26940.306 62368.8256 98026.0402 48724.1943 56407.5213 337260760 terc Metal Homeostasis Tellurium Detoxification Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 8974.6026 7387.3303 6502.2043 8362.3569 3805.0309 10881.4516 6621.3584 8361.5923 22099.8269 932975.4368 4961.4025 10647.6264 5940.6048 4816.4231 4816.4231 4522.9116 19328.2771 17127.5785 10937.8966 12332.4981 12332.2299 5431.4675 5714.4872 10449.5492 27131.5831 30303.9325 4392.1166 15799.8591 4747.304 8070.5618 8900.7551 5853.2308 24166.4955 315249909 RgaE Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 24621.5825 12352.4548 43210.0727 38054.1068 67571.9786 62791.907 38176.0167 22509.4972 54961.0408 27987.3857 58095.6171 24840.4351 828749.0381 35160.7744 30753.4378 44221.8833 103029.8202 103029.8202 19410.8008 51090.1423 34195.3434 17482.988 30628.7274 33240.2034 22714.825 53830.312 36458.0086 18749.8966 167286.0722 35282.4836 44782.8392 11477.8901 31279.3527 14317.6035 16195.8177 28297.5093 116743200 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19190.0704 14942.3286 26642.3576 30490.5932 34652.3967 12157.1665 12010.8983 23289.9981 12813.9286 19305.041 32628.9671 20326.1216 750988.3978 52273.8351 26823.4088 27288.8256 20822.4665 20822.4665 18098.9421 50619.2358 18580.7697 39833.5969 28842.9958 33585.2007 17412.109 20390.5603 50201.6319 13237.2946 63199.713 31640.8317 46187.1118 12903.5711 21763.2093 19965.6085 14645.666 24242.1373 89512768 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 544002.0666 19605.4416 136342.249 80357.3976 44282.0039 62475.0774 80967.2143 218305.336 186497.8104 172530.0704 59852.4425 76686.7562 1317728.7713 96248.0479 318648.4728 195838.6877 420729.4261 420729.4261 50584.5125 121494.1646 105481.0584 512781.5567 153269.5165 102069.0173 120420.2905 95871.6467 67299.1736 82230.2683 185981.8829 212833.202 142196.874 51142.2493 95875.2511 88056.8192 34931.2681 424397.1719 84502849 poba Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 65943.3508 26389.5917 24079.6687 7761.6885 36600.4722 29915.4714 20202.1324 30038.1881 60503.8475 33236.0009 740306.0459 38905.372 60064.4209 51090.764 38266.8531 38266.8531 53741.431 51395.7719 69551.7962 47973.5594 83892.6837 43009.5201 27608.331 34215.8555 42557.7103 35636.8843 75876.0332 132592.7683 63942.4018 22012.3483 34164.956 92480.5619 21838.9211 52997.2922 359394074 ppx Phosphorus Polyphosphate degradation NA Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 25891.5529 25130.8785 13502.2368 26405.6584 26329.3278 34599.7933 16869.4413 28065.4095 27420.7811 18368.0048 17296.0597 305199.5762 64367.03 37497.0087 13202.7154 12445.6282 12445.6282 13013.8424 36398.8987 15834.8037 53021.194 258398.0236 47572.5458 16845.5969 20680.638 24019.6455 12350.9933 46534.8902 25674.4367 28386.4011 26224.1456 17073.4054 27213.5509 43594.6553 43779.4728 311229110 vana Carbon Cycling Carbon degradation Vanillin/Lignin Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 111627.2857 26420.3238 27991.1031 20255.9374 9100.2188 2853.1341 5079.7145 6453.1881 4368.3786 146946.6602 25214.7825 7734.2899 2968.9971 2968.9971 6181.8265 9760.9609 11610.4272 4966.2855 7588.1926 5660.7029 2845.7156 5256.7315 8786.4376 3588.0708 15595.3069 13046.5956 11061.9004 4568.3745 4934.6991 5362.9286 5394.0761 8784.773 354725712 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 48117.8489 21322.4704 78874.2798 46943.2146 25715.3502 24260.2107 17157.3144 13063.1944 27820.8754 33981.9917 16733.2497 637394.436 36455.9799 37409.1156 17517.0439 22336.1396 22336.1396 16783.0731 60171.7161 26318.1128 49367.9629 33953.5975 32709.2678 14291.182 19369.2417 27381.8314 15871.0872 57299.814 36984.8724 34908.9683 10756.7087 20438.6504 25453.6488 13897.4264 23941.4794 335048688 gdh Nitrogen Ammonification NA Megasphaera sp. UPII 199-6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 33510.6417 9623.4869 90693.0027 9452.4232 6123.8793 4667.3507 8873.9417 4130.6405 165495.3379 20837.4106 9334.7156 17825.7587 9028.2434 9028.2434 4617.1229 16104.6069 11335.4401 7723.0889 24423.5808 4837.041 21499.7261 18395.4541 17691.6394 7834.7899 9728.6819 6935.999 2202.7086 10102.6588 308176239 poba Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 111130.7688 452625.0328 427247.3074 22689.3408 26616.1399 4665.1821 112402.4034 79530.0226 50398.3788 50807.767 51996.0901 113119.7712 700157.856 46421.965 113748.291 89344.1396 83431.4282 83431.4282 33172.377 88428.2532 66414.5547 53062.1169 107820.8713 41372.7717 61870.3452 61424.91 71898.8925 80886.2021 196223.0287 55158.7844 80421.6151 38624.3109 80854.4496 76928.889 35885.7943 63107.7758 408375074 linb Organic Remediation Pesticides related compound NA Alcanivorax hongdengensis A-11-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax hongdengensis; 56593.6154 110207.8402 13706.5495 66112.2246 45201.8758 8821.9348 66241.7458 17037.9884 15991.9747 25183.8631 25598.6162 409365.674 45735.9959 21556.6094 43386.5057 41155.726 41155.726 31136.1195 46993.15 25587.9573 34192.9524 36707.3717 63160.2036 16295.3978 37144.5041 46206.8181 17922.4499 57400.8797 53103.3909 44517.7495 8752.1381 39455.3294 26877.9219 22431.3723 16708.3506 145218029 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 13544.5692 14183.1482 6629.0514 8431.9439 27673.1411 5563.8719 3118.0964 23451.9231 4155.2976 10381.7107 12474.3761 8061.9669 235161.5174 7362.0904 25607.2198 7894.0063 10709.8002 10709.8002 6029.2632 18995.3862 8601.6565 8048.7334 80752.3786 11443.1532 3402.542 8631.1476 16285.8163 3415.7131 55422.4305 13897.5623 14458.6424 9146.8157 10773.3614 8146.6766 8158.3622 6294.2556 149190855 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 9876.0269 8673.6441 22991.3236 65723.2928 6487.6074 13140.5315 7817.5822 10302.5714 3877.5856 222858.3478 9393.0138 7150.0091 8184.7571 6405.33 6405.33 6534.9011 16945.8224 11359.0282 8434.4566 24084.6667 18408.7195 5528.0901 5064.4471 13765.8236 6218.5898 31927.1564 7808.1125 15069.9787 7420.5598 6919.219 8000.8602 6952.7195 18106.3436 91787939 pcpe Organic Remediation Herbicides related compound NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 19868.1719 4990.5776 2056.0453 6214.8917 87588.7148 22973.1607 3638.1368 7055.1167 4219.3229 4219.3229 5517.5389 3502.9255 4799.5531 37975.7276 5116.8789 8918.3243 4415.4487 29004.8664 5737.2911 30903.2845 3357.4132 5254.9833 3175.2541 294458566 amyA Carbon Cycling Carbon degradation Starch Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 9860.4363 5507.8411 25649.822 2454.3662 4817.2239 4295.493 16363.1616 5070.2074 72692.2212 8127.2481 9734.4302 2645.9137 7617.6191 3706.5653 3507.84 6449.292 7180.3862 4400.4412 5823.6573 3591.3677 8801.8724 4923.4875 7799.637 1933.2501 4246.2185 6367.0424 91799927 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 5975.3963 12327.6099 4231.4999 4347.6221 6731.0698 5531.4443 4276.9862 132851.0413 7205.9164 9825.3525 4075.3208 4734.503 4734.503 7238.1175 12820.1123 11944.1818 10207.0256 22752.7302 6365.8539 4327.4311 5012.7968 22247.7808 3734.8233 19258.0947 9645.1954 10671.3323 4757.8102 6032.4156 8078.3219 4037.0582 13623.4318 355385936 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 33747.2204 10993.8794 166166.6191 23890.3274 10013.821 26292.3591 21474.99745 44075.1024 28113.088 32725.4525 19626.4723 580642.2478 39304.581 35937.2167 32993.313 24713.3792 24713.3792 22088.0824 42424.3169 28753.6819 38914.3424 713969.3643 41261.8841 12705.08395 17408.7303 42776.4854 28262.58055 66016.3398 26169.24095 41295.3374 15365.3361 30295.1785 37726.0218 15912.5266 51725.7808 389878288 poba Organic Remediation Aromatics Aromatic carboxylic acid Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 4978.2373 31374.7858 6595.8839 15851.5201 4857.8489 3313.6829 4658.9528 3596.5957 6261.8245 4522.9039 92671.1854 4077.0614 4540.4021 5047.4671 5047.4671 2747.3096 7789.1877 4271.3578 20367.5976 8308.5526 15041.3897 4332.2812 3634.7971 7054.9869 3476.0287 9985.6569 3895.0752 8191.937 4552.6759 4565.676 4694.2816 2606.4245 390523519 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium dehalogenans ATCC 51507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium dehalogenans; 50825.9207 18938.6168 210050.0316 101188.0691 214671.3338 1877832.2781 90756.5391 96247.3853 11693.2554 16078.9059 19274.5078 18204.9934 582984.9835 22011.2694 25709.8735 31081.7651 18813.4625 18813.4625 14532.5022 35528.302 55498.4373 36602.9941 75176.4383 42198.3005 15154.684 27213.5612 38648.9105 18559.6955 36788.8485 18723.9562 27931.6417 99459.6812 18381.3151 24651.3349 14646.8608 31367.3848 378729395 chnb Organic Remediation Other Hydrocarbons NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 4955.8218 4407.1186 4407.1186 4117.852 5439.8926 26023.6411 5031.2467 43945.927 3375.2025 154285848 nitrate_reductase Nitrogen N Assimilation NA Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 5955.9358 4109.9488 79406.2079 3966.2899 4783.4664 2823.9248 7779.5005 3649.2724 2341.3438 6380.4827 2083.1553 6247.525 5368.4927 2784.8219 3024.5966 7888.8282 384919792 amyA Carbon Cycling Carbon degradation Starch Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 4435.5254 249117.5173 6637.9743 20701.3902 3268.092 2067.0334 4437.2676 4804.2613 2808.9708 72788.9293 4341.7298 5419.4481 3374.375 3374.375 4073.6707 7563.6812 5775.7626 4805.909 6122.4726 3277.2038 3957.6908 5920.694 4191.5371 8317.4567 7497.9075 2496.249 4143.4934 4303.1444 3678.3104 6795.4287 328469426 cda Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 10329 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 7281.9326 13905.3765 10786.3598 2685.74 3524.1798 153597.4977 3625.5409 69549.9633 5032.6666 3686.3892 3971.4373 6280.4452 6280.4452 3353.1625 16650.4582 7571.3913 3838.7271 8514.5201 3708.9598 2686.2946 3258.3486 7874.2596 4174.2143 10312.1832 5401.3613 13981.3382 1833.6686 6719.0966 4891.7541 4358.5383 5477.1903 83954038 ppx Phosphorus Polyphosphate degradation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 12806.9783 14916.9019 6473.7249 20671.8924 7577.2404 13754.4077 6337.2908 8052.0359 10741.426 9824.1336 116217.2575 41394.2925 10491.9516 8781.7911 9860.5377 9860.5377 5100.17 13720.0347 9009.3545 5614.3278 8354.3141 24175.8569 3870.1865 6054.8035 11169.9561 5606.6686 21769.0086 9833.749 11230.1151 4040.1357 7678.7772 5572.7495 3756.5875 6130.3915 208605300 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 9195.0317 7847.9886 2801.0241 7591.1669 3051.3845 22983.2685 7579.2012 3449.8618 92022.0462 5403.1666 4921.4051 2441.0744 2441.0744 7663.2701 8515.6812 6789.0468 18946.9962 5928.7675 6658.729 4166.0811 3041.699 13469.7443 3740.5194 15142.7612 7521.5907 8380.616 2980.4679 5402.8405 5253.209 3779.8576 11136.128 83856439 amyA Carbon Cycling Carbon degradation Starch Croceibacter atlanticus HTCC2559 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Croceibacter;species:Croceibacter atlanticus; 12631.843 29492.5412 14484.4378 10670.4153 12285.9259 8644.9614 4208.7466 6404.2742 9586.5616 8741.4172 149983.2289 8212.0094 27212.9916 8907.7607 5118.752 5118.752 9859.6069 11410.0502 12959.053 16796.1398 16817.4117 7857.8379 5377.3814 6972.6337 14473.1566 5583.6544 32254.2805 19842.2517 13205.3617 4070.1839 7013.2991 56450.7177 8751.6702 21687.176 22449909 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 17189.3728 4631.5782 2275.3439 3459.5483 1990.3699 4877.9338 7284.2946 3301.8887 122491.9707 5199.0771 5424.8239 8563.7069 8563.7069 4751.301 8653.0899 7968.2626 3646.134 6604.9206 6547.676 3499.4402 3261.1286 12989.7404 3893.3131 11532.5509 5837.0471 11963.0343 3529.9744 4476.1736 5099.3874 3186.7732 6662.5801 156072052 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 84231.2226 13145.9889 30475.814 6448.7439 8777.6346 20341.9466 9937.4308 15545.9927 14493.2985 16109.1581 1056756.2801 19746.355 24551.996 14313.0166 23994.5528 23994.5528 3687.2862 14819.6081 12831.4821 15788.8408 15858.3161 4853.1031 8968.8441 7480.7973 29549.8172 9797.0848 29128.3391 19038.2372 24682.849 6573.3167 7893.0946 11804.006 13140.4233 10454.8755 118575599 amoa Nitrogen Nitrification NA Cenarchaeum symbiosum A superkingdom:Archaea;phylum:Thaumarchaeota;order:Cenarchaeales;family:Cenarchaeaceae;genus:Cenarchaeum;species:Cenarchaeum symbiosum; 244202.8973 6159.0733 11241.3598 3052.4699 15127.9653 8305.0487 4706.0869 192534.9678 5033.8779 12101.9185 6204.9785 6437.1034 6437.1034 3922.9215 15047.6194 4968.9273 5386.0047 22362.813 8263.9712 3369.6629 3285.3074 11700.5568 5719.9928 19696.9437 11073.111 11013.5884 4574.0477 5457.2701 4418.0128 4543.052 7600.1773 90423833 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 13238.9797 13430.54 22526.9374 48959.1553 60456.6154 7350.4944 8538.0462 16789.1958 127329.1314 5876.8333 10805.9683 55767.857 13272.4916 13272.4916 6733.294 21990.5577 23136.5492 13288.0047 77385.9857 6054.9964 37450.9477 9245.8654 160694.1933 60093.4246 26634.0757 10466.0194 20819.394 10463.7082 8213.7115 28187.3306 7704.1289 54902.5205 358239267 cysJ Sulfur Reduction NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 64829.4182 32283.8817 21578.7208 30034.7918 761106.5277 59356.4643 33547.3692 23123.7965 44656.6269 31807.2309 58716.4405 25567.0455 540342.4392 32279.1081 38490.6605 54511.1031 38822.0039 38822.0039 24865.3656 46631.7579 44989.0397 19666.6064 38610.0761 16921.2547 17680.7199 23947.7998 43264.8383 17460.8064 106578.7028 40022.5934 89646.6933 17182.3186 27379.1428 27991.1638 13187.0974 38810.6403 255034706 arsc Metal Homeostasis Arsenic Detoxification Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 56551.6168 11527.736 54465.8618 514406.3398 67954.5685 15561.1004 51596.8296 85076.8754 51534.6393 68045.7163 66509.198 51189.6524 1067295.7469 53691.5406 97276.0082 82430.0766 53717.2572 53717.2572 36699.6933 81227.1724 41574.6695 74897.6742 59715.0264 82100.4997 30585.894 31740.4856 44693.3112 27101.4366 31666.6985 28726.4221 126789.6058 38036.8771 40867.4656 57015.7797 26899.2118 61004.578 373952693 ara Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 10628.2047 13515.273 5900.4461 7738.1799 4569.3433 4034.7008 5816.0981 6707.5989 14215.8658 7171.8107 148266.1691 16949.3412 11056.9275 5663.1996 9134.81 9134.81 5008.9583 14551.093 11737.542 9976.741 9474.241 8664.8218 4725.8558 5791.756 8283.7326 4513.9065 22077.336 10305.4867 11377.2915 45302.819 6660.1158 7683.9926 8031.2516 12609.7395 90336675 catechol_b Organic Remediation Aromatics Other aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 9044.1103 10411.6771 8875.3504 98985.0756 5568.6447 11416.3167 18478.7354 4376.4587 8928.1947 9539.1747 81405.751 3736.7033 19053.2278 17960.1332 7999.5098 7999.5098 7880.5764 30479.6558 8582.1208 8830.948 12984.2838 6362.7433 12231.5655 39381.4602 9472.8492 30451.0718 30788.2719 42716.2658 25065.2439 3699.6341 15188.2021 10128.1705 8464.1544 13633.3375 383781558 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 20539.3425 5449.4772 124888.5399 9445.1477 21992.0342 7062.0956 187309.5336 6669.2519 8932.8746 15182.5362 10654.9699 285615.549 18455.68 24314.6802 27402.0476 13569.4627 13569.4627 34449.3666 15633.4265 9985.0226 7171.4615 23277.9723 10106.2323 5149.1508 11470.8088 25365.1741 8055.2372 20436.7705 23198.483 30993.3111 6640.043 10426.9219 13503.7509 4884.4736 15283.675 46318035 pcpe Organic Remediation Herbicides related compound NA Ralstonia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 44822.3633 347921.7317 136699.4775 41947.4903 40242.8567 23192.2959 30560.7 66264.0068 29877.8376 30740.9865 36792.4928 37958.0884 1255573.6542 40349.6095 110142.8839 125087.4579 48647.2015 48647.2015 242912.8107 80576.8346 36983.1224 18068.4181 31457.9609 97959.0338 26739.6184 56612.8208 31019.4854 149675.4216 266067.7954 43944.7584 67106.8733 13125.2189 40310.6469 71198.9528 374076.5876 41321.9523 375262356 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10422.5281 8231.4798 2911.2451 2351.3716 4156.0013 5154.9907 3690.4769 80469.2927 13325.9011 3837.572 8558.0794 6270.2989 6270.2989 4501.5676 11902.7524 6689.0556 5568.0245 10108.3029 3920.8599 2789.0235 6046.0779 5254.9506 3246.7187 9682.4341 4153.4895 6854.8248 3772.3356 2771.8604 7187.7292 2595.235 8926.8846 145218861 dsrB Sulfur sulfite reduction NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 6010.4044 2946.5406 4811.5086 3012.4166 5922.703 8182.2864 2743.6773 8228.2613 7367.0829 4569.2092 4569.2092 3278.1206 11535.7278 5843.2937 8445.3295 10915.9892 6018.6555 3375.6127 6686.0179 11304.9626 6647.8826 19429.4714 9738.8336 9383.5095 7845.7668 6283.6972 12558.5841 5024.9221 9102.3271 359409512 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 47157.0085 188953.4143 5638.8563 11357.8175 19161.2137 17134.1501 35252.2184 21470.9263 26606.1342 12755.0568 325703.1078 35306.0149 23379.4798 13679.7788 13159.8683 13159.8683 13198.4364 36026.6149 11693.3633 355351.0963 24024.7597 10750.6794 12779.0592 13121.3302 19157.9319 11370.3424 51911.2746 22990.1961 28369.2651 12401.3896 20175.2673 24620.579 21431.9864 23350.4532 209872369 nosz Nitrogen Denitrification NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 67108.1249 57598.4768 70145.6973 55896.9346 8558.1672 63575.3895 61542.3044 27575.3918 44963.5512 244954.4103 45453.4482 1559503.6833 74825.3007 53952.4717 47709.4342 44860.0673 44860.0673 44236.876 106761.5337 49794.8913 98940.7412 84823.203 83648.8918 46526.855 41035.5691 79547.4989 186556.2589 141870.7281 151734.4267 87984.4142 43818.3442 37730.0732 68053.6587 68058.2959 67069.8722 268680800 arsc Metal Homeostasis Arsenic Detoxification Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 14095.9708 7326.1815 7074.5099 19405.7495 22995.0413 8226.369 6029.5085 17657.2024 15142.009 8825.9929 271074.2266 20422.6547 16815.012 15886.6361 7809.1578 7809.1578 11227.1245 19781.0142 15913.2686 18734.5301 20700.1822 14695.0244 7364.3804 7513.3727 17292.5418 9782.3989 18760.1519 16063.2211 5706.9446 10159.7523 10926.762 7601.6591 13408.1767 330375450 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7245.1892 4871.42 8650.0457 4935.2401 6464.3353 4550.3415 5753.3341 5559.2595 2932.0638 84965.4541 8145.4323 4315.4612 4315.4612 2888.1348 15902.6613 6977.5563 6323.813 20306.1241 9121.9649 3962.7492 4334.1403 10423.0784 3234.4058 19804.142 10701.0633 12647.1915 4597.3932 5757.5823 5328.7676 3869.317 7860.4659 87281271 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6461.0737 9688.4492 4368.1555 3076.4146 2098.6429 3865.851 13469.1822 5498.8075 66504.0116 8875.1078 5632.0909 16403.786 12856.3791 12856.3791 3186.077 8623.8602 4628.9209 76221.2167 7805.1666 8065.7907 2906.0255 3276.2662 6560.2202 13243.0769 9023.9075 5822.3635 3981.0967 8965.4021 4574.7449 3734.0862 7110.3328 3184044 one_ring_23diox Organic Remediation Aromatics Other aromatics Ralstonia sp. JS705 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 66369.5981 16300.46805 37008.56065 103235.29915 88590.63355 28770.9542 50578.6607 167411.43425 24691.39365 44893.56545 44214.25155 25479.9346 1353225.938 56998.638 54882.85755 98952.27795 42255.38735 42255.38735 31021.3996 59794.88315 47449.99255 55091.33365 44649.86505 68911.05125 24549.03415 27341.8186 50969.27865 20965.88175 85966.53865 51553.4369 66368.75075 47670.87175 40057.70635 43355.35325 19811.2954 57586.90715 333988912 urec Nitrogen Ammonification NA Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 37833.4304 10702.012 55231.2056 43131.4405 40754.6342 5050.5701 23539.9416 60028.7339 17250.1029 202054.492 27318.094 28825.7981 16642.7837 18124.1311 18124.1311 11270.7473 30458.1533 8767.3011 22924.6602 40331.7056 13165.2505 20434.9784 11679.4495 24104.8578 15174.7803 32643.3735 31087.9351 19119.1839 18429.2086 25748.9488 30643.1222 18388.9447 18322.8069 389864530 badh Organic Remediation Aromatics Other aromatics Modestobacter marinus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Modestobacter; 35562.6516 33172.8061 8558.6362 35051.3051 17683.742 24052.1508 62058.9852 22022.3507 24627.2883 20467.8175 348733.4409 21996.5195 54376.3864 54209.7402 24399.5543 24399.5543 34494.5528 26119.1206 19427.5083 20124.8382 31109.3771 9576.5457 17308.8463 25000.0392 58967.2843 24951.2044 56385.5666 34952.7138 39959.0022 10858.4529 34575.3695 29023.1806 32878.9758 28621.0166 384259499 chitinase Carbon Cycling Carbon degradation Chitin Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 10650.1155 996145.1157 5572.0859 72765.3379 4621.9001 9381.9507 9804.3478 18202.7999 6071.7636 177767.8709 17131.2072 7651.0525 10123.9693 10123.9693 8356.119 16535.0792 10528.28 13925.0475 11312.4493 27935.6342 5225.1713 6817.3768 16092.5742 5156.0412 24022.1441 15620.4262 15612.041 5262.5198 10880.4102 17503.3345 5220.8513 14444.0876 56798785 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 25717.896 7901.6722 14509.5061 16405.0608 18681.8236 11190.898 9332.9177 19565.4529 18999.8064 14390.6679 393597.2781 18349.6804 31737.9549 12721.3444 31156.8946 31156.8946 31419.5629 28686.357 12861.0471 21357.0634 22130.7588 15878.0765 12652.7664 12981.0049 23498.49 15748.945 46150.9168 27566.7044 42268.8707 11976.5024 18223.6035 20155.8544 11051.5757 31818.7905 34494872 urec Nitrogen Ammonification NA Haloarcula vallismortis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 35025.8588 3310.6531 9742.9967 2452.1692 58956.1438 3787.014 2370.1261 2370.1261 36173.7774 2320.8248 26985954 SoxB Sulfur Sulfur Oxidation NA bacterium HY-90 superkingdom:Bacteria; 40653.49755 236417.3661 237718.0476 29735.342 7423.1739 11785.53795 16795.9831 23575.15255 34286.1958 332282.8867 12870.0077 14553.543 14553.543 35124.9484 37277.7788 29093.5357 17680.08225 38513.6587 15501.78045 24775.17585 22841.8145 57968.16065 34530.5349 21525.47065 25730.17725 14037.5564 25922.8027 46917318 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7691.3726 7975.2381 14670.7428 22253.8434 5606.1496 2381.8671 6922.5506 7758.891 4679.4425 232581.2192 12626.7725 5914.1997 17854.8482 6253.6187 6253.6187 8642.9079 14984.781 15657.6481 15014.4377 9111.9431 6677.6114 22965.3707 5956.7741 21926.7613 4826.6059 24126.5375 21536.1548 15062.2758 7192.5338 8368.8665 8273.9773 5039.4255 16915.516 114195474 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 27102.478 15003.2269 16291.545 19757.2659 36065.5662 12196.2492 18629.7536 62262.7558 13643.0576 30545.994 22764.1676 13985.8336 536381.9074 18674.0612 24249.325 26237.1057 39127.023 39127.023 25400.7473 26800.3073 22899.5991 15594.0147 21239.254 18089.444 16589.8894 19969.2322 57668.8538 40600.3397 322883.5508 18771.0862 39843.5398 22387.4759 129357.8049 24068.4835 24498.2153 27298.454 315499019 glucoamylase Carbon Cycling Carbon degradation Starch Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 5710.5841 422200.9848 4420.0587 11330.6978 4965.769 2615.9134 5314.7959 68206.9597 4221.7396 5541.6619 5948.3397 3296.4738 3296.4738 8263.5182 6097.8486 8846.0018 7262.1068 11162.1848 7122.062 7525.8648 2793.1045 3184.3052 3038.3356 338800348 cysJ Sulfur Reduction NA Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 12293.08325 31515.46365 42667.5423 19376.86775 11411.8775 20177.0768 21943.9637 13145.615 15138.3097 13571.6627 294477.8826 21377.894 34613.7245 18468.4308 18468.4308 8317.75645 15543.52815 10029.76885 7702.3337 15139.2941 30491.2042 8555.94255 36106.41155 13751.33315 17061.4466 9147.2959 13872.47385 380696305 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 7488.1112 2323.021 4792.9757 2806.2671 3525.5774 3491.5864 4561.3959 11957.163 3328.4197 5500.4159 4996.7352 3099.4655 15022.5568 4527.3862 3880.5092 4070.4428 5649.7663 4120.1947 6173.7606 19421883 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6215.9621 4300.5757 2426.9279 4503.5709 3011.1932 5159.8583 3293.6974 3617.6328 9195.7775 7849.5728 3074.1308 3074.1308 16019.182 7001.7708 4809.1544 27858.6614 3639.2998 6157.337 8004.3052 2343.9628 9077.4771 3790.7559 7707.7731 2239.1039 3943.0311 4428.3787 4960.0784 7541.4714 218757603 dsrB Sulfur sulfite reduction NA Desulfovibrio vulgaris str. 'Miyazaki F' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 36846.6608 29283.1495 33397.021 33642.3546 73837.2107 66973.4889 24931.0242 27879.1769 12018.8695 94959.3751 67602.5 77819.7344 1387766.8697 30471.5249 41838.0677 36009.499 49569.9658 49569.9658 17915.6461 33291.3055 28635.6721 23188.4638 84571.6116 17784.0338 17874.6253 57469.2484 46820.9166 34201.2966 75850.6734 35810.1874 54176.4363 23962.4131 23676.0125 42351.9348 14574.0268 21542.1835 119673534 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 21997.4029 14063.7259 5504.2272 100434.7936 25452.2689 7290.8687 7308.9194 24901.5749 5981.5676 12762.362 12947.0971 13470.4287 308101.2439 28377.7198 20762.3633 24036.5241 19544.3346 19544.3346 11256.1693 22900.6475 15446.1764 11262.058 17887.8263 16744.9257 22157.6807 11344.7447 27293.6397 7314.4287 32197.2536 26293.4263 53899.6887 9917.2788 61864.7811 13994.4983 10619.2246 20403.3733 347758077 TIM Carbon Cycling Carbon fixation Calvin cycle Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 10428.4217 26443.6764 3015.9265 3991.1304 5921.6283 2589.2426 2589.2426 32569.3997 6394.4325 2705.5508 5726.0943 23875.5692 5694.1806 2252.8258 3594.4543 2679.0783 260888701 ppx Phosphorus Polyphosphate degradation NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 12044.9077 48913.357 22358.3957 3367.401 3862.2557 4808.6878 4639.2417 6907.1596 4124.8657 9753.7754 5017.4436 4522.8741 4949.3529 2146.962 6949.9096 302407105 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 209111.9918 15503.2607 14888.9115 14978.5696 11700.8676 15596.6389 6770.5898 5653.2521 7492.4639 5241.1204 114939.1993 4102.6414 10534.6587 11880.4809 14019.9928 14019.9928 10327.8371 82433.3506 15704.143 203701.7294 26410.3747 10487.0958 10708.1505 22512.7733 28182.981 12952.1129 150189.2629 18377.1143 37718.6276 19634.7457 15461.1615 31884.0625 3525.7325 5469.1917 3449374 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Halothiobacillus neapolitanus c2 6079.8552 13126.3438 5029.1384 2747.7211 6804.9043 5484.1791 4973.821 2616.6898 133355.8586 6774.8675 4986.112 6575.3805 4117.4227 4117.4227 4834.1994 11707.7493 6019.5948 3751.074 9362.7465 6870.5102 2953.5503 2572.3123 7904.809 6543.0583 13446.0865 6040.1099 7593.3968 3306.1736 3943.5612 11628.1818 4117.0249 10069.4664 374922749 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 7652.9276 19162.4429 5952.0245 2926.0859 6683.3456 7002.5335 3315.2547 113321.1566 10668.412 34497.1921 4827.2157 2780.3031 2780.3031 5261.2146 9282.4293 6143.9384 7320.0069 6348.5201 6983.5543 3390.3975 4128.4079 9316.4898 4142.695 18540.2034 10223.091 10437.3024 5676.1962 6108.7518 7509.6344 3769.7596 8794.1697 198260697 ara Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 18143.3949 5533.9364 3314.7013 2918.1343 4250.4306 67796.5185 4610.6852 4191.705 2675.6352 6910.3369 7329.7361 4675.62 7190.6068 4683.5444 5232.0647 2566.9815 5564.9971 2494.9898 9826.6828 5001.36 6655.835 1876.9106 3903.8138 2706.4437 8546.3668 76803740 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 496200.8081 351200.7702 328143.0095 564733.4801 280690.8513 192460.1045 560184.3538 336062.3129 334130.8543 392529.347 392632.1048 330438.3211 5730374.2667 456747.5756 373804.8273 1208369.783 411493.812 411493.812 256120.0501 559301.7756 254045.7258 756284.2758 400610.6169 576643.8288 269797.3415 260017.1839 332919.4434 260525.7997 649101.0309 217457.1124 570113.1253 239687.997 302263.5691 344517.3754 223518.9445 456916.1834 268679603 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurospirillum deleyianum DSM 6946 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum deleyianum; 51001.973 38791.408 54119.971 231907.9719 45927.0383 27997.7721 345220.1074 189315.8272 83939.9811 43763.8216 63011.1297 63089.9755 1389998.4976 153424.8417 65514.5225 128735.778 69624.2644 69624.2644 42359.2594 144103.5796 53382.0816 85475.957 126632.4547 61040.0322 35442.2075 46587.4462 56403.9318 77891.0658 158208.5639 70652.9521 94968.4654 73110.9423 50068.1584 61538.7303 41770.0485 90284.9095 112464119 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20645.1158 17222.9191 11708.4755 11781.0036 21599.2056 6047.6934 11828.0646 7575.1317 48660.5777 18145.664 9217.7449 225517.115 12512.098 13161.1659 14861.8986 21470.7402 21470.7402 165377.1057 22255.3649 150457.477 24218.7496 19126.3588 19938.3667 10319.0689 7390.6894 29529.8098 8448.4612 31180.5753 16857.6048 26442.2762 7858.5614 14660.2517 13534.0605 19011.8733 23346.4726 88799829 poba Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 25308.3135 20305.2333 32486.4839 54408.4929 4717.9 7615.7648 499637.6728 7890.2953 26473.5287 10814.3688 26300.8164 307015.9088 16862.4463 13209.3576 11761.9526 12921.3299 12921.3299 31432.3688 33890.8061 25259.1901 7162.0763 32909.1942 9361.8724 7263.2118 17112.8699 25144.3922 22363.624 78055.7857 21218.1205 48171.0453 6480.8976 15050.3902 20891.0753 7639.6334 11566.1564 209401670 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9743.1439 5850.1695 14175.634 14641.1675 88993.1366 21298.9354 22553.5663 13098.9495 23086.1378 17337.6854 188570.4793 15015.7538 19580.0126 20183.5224 19494.1505 19494.1505 11359.7434 34671.0701 19002.741 245339.5888 23307.8802 71267.9157 14941.3991 10957.4509 17387.1478 17055.6644 35662.4555 28537.5111 31224.3181 8435.8427 17421.8967 22154.9663 18163.8257 15499.4461 198284925 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 4885.8576 2709.9594 2949.5318 3858.812 7928.4961 6500.2891 7094.9001 204793.4001 4563.9298 4563.9298 5498.3939 84693.614 9751.3658 2648.8849 2552.4048 3024.8278 5415.0546 7987.4822 2289.3132 3061.1973 4168.6745 2603.1091 5549.1324 78184405 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3413.9888 2110.1872 2861.897 5175.3509 3548.9213 3782.4276 72083.4638 3912.7686 4086.6467 73465.0109 10347.9498 10347.9498 5621.6807 11722.6761 4288.1187 3752.0465 5108.4194 2336.1766 2332.7157 9002.5183 4769.1093 7184.1799 4478.7852 8344.0784 2974.6385 4256.9526 356754.1851 2345.4112 6117.1027 116619464 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 10404.0293 6664.9873 14932.8905 8695.2645 7852.9048 7555.8314 7478.5825 10623.2378 11463.768 29630.2246 155535.4842 11594.8255 15276.3969 19274.6352 6765.216 6765.216 34197.6562 15877.7 10435.7548 44107.4106 16496.1456 18933.585 15307.9476 7567.5479 31222.928 26236.3885 31743.5031 15291.1504 16690.5697 8765.3108 9384.9606 27552.3867 9788.6638 12824.4011 259502938 narg Nitrogen Denitrification NA Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 30826.0301 13313.026 22076.9113 12253.3977 86788.705 8050.3255 113813.9975 70065.2061 10651.7061 22562.0629 28154.4741 30884.5307 173796.103 32533.5667 21452.6709 30049.3664 18255.9464 18255.9464 22121.0477 41763.7565 25875.585 16438.6754 31202.1709 34200.098 18746.0827 19807.8965 20552.6308 117726.2489 70554.3927 33804.8311 29244.7383 9406.1155 29196.135 48468.4055 18761.7365 50614.3711 338752771 pgk Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 40764.8237 40285.1239 37135.952 25330.6482 32469.785 17866.7722 23492.3703 26787.4766 19374.8055 26445.3854 39085.9448 15436.6226 692143.8112 52023.0344 31538.3982 30858.1754 17838.8706 17838.8706 23863.1851 87101.2718 38939.432 45792.0519 42993.0789 65635.6304 19108.4306 23484.6168 40855.3547 16093.319 89669.5882 15057.432 58640.6397 19759.2546 31662.3909 28393.6731 16024.3874 37889.902 328527271 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 4069.8913 3102.1485 3098.2007 5864.2317 80169.1514 6630.0392 2606.3769 2606.3769 4190.8775 7162.5698 4107.754 5813.4337 10311.7574 4520.3185 5206.2817 2617.1676 2861.5503 2917.858 4998.168 118172380 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 78936.6126 67094.9811 76840.7289 53255.4475 22194.5506 145813.8426 30747.444 25633.9213 20889.3949 42912.6542 22996.7929 595563.1149 39522.3889 40388.6581 40621.7023 27731.6391 27731.6391 24221.7053 57230.0102 25490.0567 27167.7038 41090.2357 51290.7307 18679.448 21731.2212 28200.0958 18932.3126 59455.4117 60383.293 49980.67 14485.7399 23312.8962 20047.9469 23040.6103 35580.3876 337744643 beta_agarase Carbon Cycling Carbon degradation Agar Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7802.8342 7171.5552 2100.0042 4645.8665 76480.6716 4305.351 3861.8215 2380.724 2380.724 2871.9333 5961.2421 4574.5166 8155.8992 4569.7075 4354.504 6471.6703 4763.5298 6928.6737 2272.2049 3010.2507 2308.913 4633.1825 21232321 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xanthomonas campestris pv. campestris str. ATCC 33913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 208639.5892 1468919.6193 40647.6106 67403.6829 69754.0029 23012.0301 33250.9157 34276.7043 17945.2876 39959.3328 74760.4828 20649.7654 614811.149 33193.0356 78926.8615 54185.9074 34384.317 34384.317 40758.2292 94639.9253 37542.4486 20963.0803 36101.6823 25491.4688 23010.3679 23645.0009 64875.3218 26631.9591 104429.7353 66101.7162 72018.8058 23706.4315 25768.0796 35277.843 38758.2901 32984.0643 359313809 cysJ Sulfur Reduction NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 29067.3165 2304380.5795 570241.6752 13460.6738 30481.6761 130809.023 15471.3444 45099.8989 7314.862 12122.4306 220327.707 96950.8924 9362.002 6657.1883 5987.2383 5987.2383 7359.3894 15905.3808 14638.2943 6776.0615 23241.9158 669230.4784 8127.5865 9397.56 9708.3518 5813.9253 26017.3359 11401.0223 13443.3121 20128.2563 7617.8613 7845.4628 5261.1679 133544.1795 171989881 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 9218.382 248237.1354 6680.4068 10699.5215 5943.4908 18358.7837 8476.6979 6321.5292 10542.2431 841154.2866 9786.3475 7484.0719 14441.9979 4366.8829 4366.8829 3238.7262 22034.2923 10444.0551 7212.062 16211.4521 28008.0833 8436.3169 7440.4033 20050.4274 8629.7689 20812.6575 21956.2699 12633.5924 9154.7622 7831.5019 8288.7281 3921.4063 16922.5758 261202730 p450aro Organic Remediation Aromatics polycyclic aromatics Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 5081.1878 2078.0742 3459.953 4643.3275 4643.3275 2218.012 24579.5031 4415.4832 2403.8258 83644004 chitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 5675.3536 4012.3745 7238.3458 167799.8659 7395.2203 14377.967 2313.5283 2313.5283 4515.9758 18488.4195 4617.236 10987.3782 159898698 chitinase Carbon Cycling Carbon degradation Chitin Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6592.6879 19639.5673 5844.956 6094.8951 78558.3765 7283.7908 6087.4549 7805.254 5130.3197 5136.3467 15033.8192 3274.6341 6322.8224 6103.803 3292.0555 4944.537 291299452 endoglucanase Carbon Cycling Carbon degradation Cellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 75042.3313 10165.2972 28626.1862 55821.4643 66448.8588 27733.6347 28143.0491 453016.6526 63857.0673 35990.5073 51988.6195 50605.6024 781945.3532 54063.3151 71385.1891 50060.7446 39478.7352 39478.7352 29001.975 89451.6195 46433.0094 445853.9151 58963.0269 45987.5921 16888.6089 50838.9189 92200.6438 33410.029 188908.3944 75843.2136 113248.3479 64778.9601 109201.4979 51826.2631 27283.2838 43612.8165 374348990 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11375.773 12256.0658 11187.8333 11259.6676 5802.7136 5270.4512 4365.8611 2116.4964 5586.1699 6364.9948 4254.5989 120741.8586 6873.8823 5101.9528 29494.6483 4775.6548 4775.6548 6745.1647 9567.3059 7481.5021 7675.9229 11473.1519 8828.7306 4596.9218 5095.1339 8326.7029 2813.5031 37104.785 6112.5419 11023.2382 4984.6709 5696.5741 10078.0027 4279.9696 9706.7211 163761438 soxY Sulfur Sulfur Oxidation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 26350.61785 8526.2833 25892.1553 12914.7408 18235.96325 5137.29935 182340.1809 9992.4243 10788.7532 16798.79565 16798.79565 3210.8681 13349.8878 11770.65705 10329.4689 8847.0317 9144.897 4701.4542 6165.4103 21189.2565 13696.10315 10967.2079 6637.12895 7539.2593 12824.71005 24910.96145 83311938 ppx Phosphorus Polyphosphate degradation NA Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 118495.2037 19428.3229 43024.1216 49059.303 40184.3896 5236.5825 34089.608 24613.2994 64438.1171 56512.6918 92461.6118 61497.9502 1221713.3285 112366.2716 86256.9638 83101.6934 54955.2585 54955.2585 103750.7093 68752.9871 47827.8587 32479.1839 101271.8815 195614.5995 41780.7007 24555.7326 57220.8551 60007.151 477839.7374 66823.0584 158710.7681 52674.107 54334.3263 50111.8049 37385.9774 67779.7346 20906878 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 18743.3406 15265.6355 6632.5459 33542.935 12002.4289 6253.4281 11057.2641 13956.0799 13511.3477 13262.0166 308915.5667 20831.9499 16803.1511 14332.0276 20064.8874 20064.8874 14702.4802 25956.4718 14566.3909 22768.2158 17080.4997 15330.8445 12255.2812 13052.1714 17616.5746 20502.5246 134902.126 24752.1848 26163.0222 10842.2066 18027.7833 16030.4341 11499.4294 106364.9661 120610779 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 10883.4273 6629.286 2579.744 299196.0568 5582.9407 3479.6375 3479.6375 19021.2629 5162.3992 3100.4113 7315.077 3442.8344 4864.5122 302423900 axe Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 147162.6798 61980.3539 37620.6453 13303.9498 16946.5554 21421.4184 23793.0289 68765.9031 29855.623 55462.9787 62738.0482 70594.4743 2313314.3911 24409.0305 42331.569 37095.5679 46245.7416 46245.7416 41819.3971 114464.9267 17092.0337 27191.9214 101263.8885 80607.3626 19294.7763 28048.7611 436628.2381 27289.0536 101991.6556 60119.6963 63410.4201 131495.3932 24958.5259 42935.5905 22248.0413 52343.371 149783143 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 66091.8912 22799.3578 8438.5641 8939.2062 95058.2672 16534.915 42593.4332 21554.5593 35247.9736 39205.3617 1135035.6755 194996.5583 92578.8137 23359.7241 28483.479 28483.479 24781.7372 49240.1872 28331.9076 108000.5015 40342.991 36457.6993 114561.804 58235.6012 37886.8855 31177.8034 79446.9793 34925.1973 53558.3198 17159.5698 27240.8675 36666.2265 26682.2517 31300.2046 299133300 fcba Organic Remediation Aromatics Chlorinated aromatics Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 17367.1202 13606.5156 25853.6168 22598.2607 20081.4537 5080.9324 15741.7708 17709.8499 8827.3954 24530.8273 19719.1089 24062.9772 509993.2228 26265.5858 13992.9262 13559.385 9999.431 9999.431 432344.9659 26837.2225 21079.69 21921.4589 23874.1183 26214.1027 14920.0847 11986.3639 24283.7153 12033.0297 35590.0592 15397.5888 29116.0003 13158.2135 13561.7487 18422.084 29078.3281 29512.3897 14026768 hbh Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 11549.9645 28133.9922 5497.7836 7797.3171 15455.8141 18955.9453 14605.006 5663.2279 8243.4273 32601.0521 20611.0975 1063022.7652 18760.0845 41181.0821 6929.2818 14691.1646 14691.1646 139604.5274 19933.191 21168.5741 9886.7524 27375.6452 16830.3734 8707.7413 31798.7874 29570.962 14697.3696 223189.2114 13257.8369 15750.1701 12460.4284 9819.7836 16379.4112 15372.1953 21731.2344 151725 xylg Organic Remediation Aromatics Aromatic carboxylic acid Plasmid pWW0 6976.7757 8002.0241 4280.4268 4715.6085 4812.7193 77334.9079 4706.8285 6429.0531 2686.6361 2686.6361 15690.5673 8641.4128 7223.4306 4888.2786 6685.5251 2803.7803 5357.5198 13408.2607 6215.3436 7595.9932 2879.7476 8591.2874 3907.3069 3384.9398 11026.6979 84693457 urec Nitrogen Ammonification NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 492890.68 62602.5523 356592.9385 413587.9458 213645.4728 193252.7084 563857.8921 372476.4523 422239.4289 302584.9099 217730.4563 250088.2319 7967375.8852 366410.2525 319889.5213 626484.5446 343450.2413 343450.2413 205296.3285 339349.2472 259254.261 298712.8953 427819.8384 488148.5898 318268.213 202366.9312 392260.9956 270075.0429 653529.0582 302407.6581 318643.7871 173123.76 281349.6258 269914.207 162281.3696 578323.7027 422314241 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5507.9983 3655.1431 5785.8715 4007.7616 6038.087 3893.9457 3893.9457 3597.9656 13470.731 5822.6134 13358.9666 14395.1583 17102.4636 4976.2085 4050.9642 29727.4247 6860.3656 19195.2435 6640.5712 7789.7423 3628.0859 5029.5016 4745.0076 4037.3376 45103.716 149211033 amyA Carbon Cycling Carbon degradation Starch Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5098.6072 12937.3804 2389.3554 3194.598 3218.4846 3974.5377 7377.8919 2753.6243 161153.9057 8144.5977 4688.708 6330.1869 3076.216 3076.216 5175.2559 8355.5415 7849.8715 7350.5334 7577.5694 6763.2292 3679.338 3350.7958 9352.9459 5161.8757 20084.0291 8916.4157 10219.763 3579.0324 4295.2757 4864.3984 5159.0199 11197.6931 312279501 amyA Carbon Cycling Carbon degradation Starch Lactobacillus delbrueckii subsp. bulgaricus ND02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 16133.7394 5877.0853 12748.2116 16836.1585 8953.769 25156.2674 6147.3004 14299.3142 15734.7124 7282.54 294419.2365 19529.4993 10773.3364 11000.2927 7309.9406 7309.9406 8365.5911 18410.7469 17276.5855 18710.8851 18239.5947 18658.1432 7511.4984 7468.512 22830.487 12437.8694 26858.4574 11937.741 19236.0245 6773.3967 9653.2591 14564.7906 7409.5967 34437.2946 302878314 tktA Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 456436.4497 34568.3516 409350.7518 1418535.1457 187949.6229 69987.2732 117223.9113 341790.0603 238194.524 139692.0952 136831.311 196485.6694 3128015.1901 241146.1742 250647.8962 352015.7219 177704.6703 177704.6703 263511.137 200827.359 210575.0268 692545.2176 279394.2234 181603.0177 110899.1799 115831.3299 152318.79 110436.1109 272613.5992 160418.4242 197419.7635 92516.0316 154022.2367 199021.3837 112657.8899 172679.6682 350285750 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lenzites gibbosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Lenzites; 17194.8684 38475.3086 6680.1827 4021.4148 2948.0923 9617.3055 2500.256 138894.11 4873.898 5413.8166 7568.73545 4036.55585 4036.55585 5655.0494 7563.5669 4163.2762 17040.8587 7231.7294 4499.5079 4704.224 2539.1498 8646.43065 5296.57425 10763.7212 6775.63595 5459.6402 18124.0495 3864.6634 8824.0094 320529970 xyla Carbon Cycling Carbon degradation Hemicellulose Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 13744.1777 8627.6984 9620.9373 10954.134 16443.2332 7838.3578 6683.5984 10927.0721 13642.5143 5252.3361 229290.5951 16966.6394 16800.2728 9880.5753 6687.5725 6687.5725 6736.1926 15225.2575 13970.8681 12224.8014 13164.222 24246.1388 7589.8357 6401.4568 13112.9844 6594.2469 24209.9265 13969.7691 14622.8167 6847.8543 8491.0455 9112.0251 11251.1392 18865.7293 353189485 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 12757.1689 8046.3351 16925.2393 24675.2604 8650.4902 7675.6947 4723.3916 10983.5659 14789.2395 6672.5399 208837.9896 15687.4504 15593.076 9434.2823 6665.8164 6665.8164 8942.6435 19672.4948 10427.7218 13489.5285 14778.8501 13736.7641 7425.5749 7230.6115 20185.234 6522.8586 26061.4133 8006.0124 20900.3174 5845.3283 9045.7352 11766.086 6154.9976 16488.7655 258654208 xylj Organic Remediation Aromatics BTEX and related aromatics Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9915.5142 31285.4262 24389.6475 3633.3211 10395.8462 5776.3446 5242.938 114148.2144 5917.5542 136648.9366 6910.1325 6111.72 6111.72 6204.3613 11517.7532 7667.8172 7776.1503 8437.8494 2215.1972 4986.8397 15071.0756 4345.9089 422260.6087 9962.8813 14483.4656 3715.3745 4412.5889 3769.9968 2768.1239 8585.2415 359408888 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 38404.8269 56224.3916 23946.3766 39367.5739 24972.2797 62323.6087 32959.9648 55322.7032 26422.0668 38719.4984 36861.6467 584312.2883 31927.3945 39424.0222 23149.4057 40062.8454 40062.8454 19782.8357 71228.6938 29020.9549 41571.3975 50036.9104 104107.7396 18213.3462 21419.0904 32962.792 29640.6518 60227.8681 44726.7259 54219.3844 21291.4343 39129.5192 31782.3218 15590.2138 348852.9344 337742581 cysI Sulfur Other NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7793.4157 4361.8374 15783.2682 8335.9189 5254.739 5562.3428 7253.002 191662.8393 6500.6177 5892.169 2699.6307 2699.6307 5220.0998 11024.4835 7726.9015 7471.8113 9334.0888 9693.5971 6351.6315 6056.3708 7189.3425 4504.1819 16086.4166 7180.5417 8464.8514 6551.1277 5705.2357 5430.6132 14162.4647 9671.7808 170027495 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4857.8484 12848.8205 10673.6754 3451.9233 3391.3535 5673.0372 3870.8165 3870.8165 20154.0405 5199.9392 4318.6943 3963.1682 4067.0345 2598.5238 4955.8241 8167.5046 3573.9929 10388.8351 2475.1351 3492.4797 4523.7773 41557.034 291298262 chitinase Carbon Cycling Carbon degradation Chitin Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 5999.8409 3413.1243 255955359 protease_serine_fungi Carbon Cycling Carbon degradation protein Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 197522.312 4398.4536 150395437 arsc Metal Homeostasis Arsenic Detoxification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 19043.2806 16465.9799 16918.3498 26925.3605 22308.1166 11219.6429 14737.9128 8421.0873 15140.6435 27077.2369 14707.7722 898583.4153 17526.9799 21252.2699 16309.1583 20653.1027 20653.1027 12062.3276 28372.3888 18312.6282 11383.7769 20042.0301 29688.066 9800.3027 14016.6978 21294.2405 21176.5641 28442.8259 25071.9864 285716.0706 12989.6448 11830.6086 12079.113 8271.4602 19648.3743 383641843 mer Metal Homeostasis Mercury Detoxification Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 102779.5884 13246.7003 135917.1949 33921.4584 25444.6215 13825.3363 58113.3602 143270.7209 76885.5709 51416.0506 602790.7426 81138.9139 1160607.7284 69418.5975 100146.6565 170832.3835 59681.4958 59681.4958 52917.6332 121327.5002 57778.3662 153439.5998 147405.0525 269000.8318 93253.7798 52584.6738 89230.8685 83401.9584 163543.1741 104853.0892 81236.7407 57224.3394 129686.8887 72540.9626 42888.6876 151497.8284 13560125 dsra Sulfur sulfite reduction NA Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 25566.129 4115.2159 1953.0394 3965.7302 12577.496 2822.9905 3650.7342 5780.3982 7254.9277 19171196 phenol_oxidase Carbon Cycling Carbon degradation Lignin Gaeumannomyces graminis var. tritici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 5780.2985 11169.0283 3402.9988 5249.0428 59900.8346 3428.2993 4722.886 2620.6546 2620.6546 2561.7655 5866.6087 2213.8177 2252.8068 4738.2142 4455.2659 5870.0701 3492.6431 2586.1712 168262769 terc Metal Homeostasis Tellurium Detoxification Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 12878.3348 7954.6651 10059.4987 11659.5199 11361.5714 11734.7404 9296.5143 6923.963 11435.2297 17407.1286 6776.2476 361758.5175 20835.8209 32977.7561 9185.1219 9585.4191 9585.4191 10159.7384 25550.2807 18333.362 21563.9275 19181.2453 16755.346 7265.8357 9947.2802 16583.4078 7785.3814 34831.6049 14526.5948 19786.2516 11287.1537 12277.1235 13571.2816 9203.1075 25307.9499 154316440 glucoamylase Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 4846.2125 166806.2062 8461.622 9555.8665 15989.3937 3526.3399 9138.9469 6355.7902 177388.8055 6394.4614 8570.5238 6115.5187 12338.6262 12338.6262 5522.2929 13325.9011 7251.4462 22822.3185 14201.9217 8296.0789 5715.647 8117.784 6874.1986 20474.3325 63381.7756 4686.0086 18193.641 10726.9854 10306.85 12951.9335 5846.2005 9639.5672 192362457 atzb Organic Remediation Herbicides related compound NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 3684.5381 146308720 atzb Organic Remediation Herbicides related compound NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 10200.0301 3949.297 9300.9922 10184.8962 6339.8881 3682.8578 4851.8051 9118.3134 5231.2767 205139.787 12863.4633 14328.8772 8017.3175 7129.5724 7129.5724 4014.2552 19880.8533 10937.76 8388.9423 7836.2209 7948.5122 3638.0649 15083.4464 11195.3346 7740.9959 48648.1593 5903.4785 12702.265 5905.893 7319.3183 6533.2446 6033.1994 7261.042 310782162 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 80024.4652 101955.0149 23567.6689 93503.1347 30832.8034 26964.6278 93081.5196 33153.1263 23464.1066 27779.0731 21923.1047 1244387.2837 27374.6889 47533.5665 27873.4773 96972.8721 96972.8721 31272.6039 57975.263 28659.5241 167141.8809 39812.2457 61925.7777 20426.3853 36552.9919 38991.5284 16615.397 219981.8959 34716.7738 73523.9808 26268.3233 30947.5091 29973.7139 16629.5025 23987.1396 359836137 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 356920.2566 39159.3987 77463.3864 13564.4717 63008.7238 14030.3897 80249.0399 50874.3806 55641.072 48334.7441 57609.8923 44463.9576 529537.668 37737.307 48515.7818 100658.1244 99373.2275 99373.2275 28889.4236 151680.3189 45352.0134 196991.3547 85832.8015 82179.3349 30958.7633 39759.0166 68021.1025 45508.7732 212463.1277 112410.8067 67641.9749 20663.7004 46784.5823 39896.2592 46309.5689 112804.1057 291536251 xylanase Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 4903.1463 8981.8066 5182.3292 7200.4424 2371.7926 80782.2654 6176.1422 4605.8558 4963.609 4509.337 8995.3519 5508.5448 4886.0108 10850.3547 5668.6847 2839.45765 9250.2293 2771.9137 8580.13265 8201.5962 9374.7983 2080.2158 4054.08055 4112.0174 3156.0113 12393.5579 357385503 tktA Carbon Cycling Carbon fixation Calvin cycle Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 4564.8478 39954.0424 4886.5477 2335.698 3872.3606 4518.3881 4518.3881 3178.7979 8626.199 3404.9749 4264.5602 5629.9105 2991.1302 3913.3759 119391421 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 24494.4382 14718.3216 312702.7345 55965.4492 19860.6481 83822.4401 33045.9398 22920.9199 13676.0352 25360.1934 26764.6607 100909.1798 326933.1328 62118.5551 76723.1239 21065.4013 22636.2373 22636.2373 37820.4853 48341.1857 24035.8629 25053.3753 39147.9169 30243.2624 23525.4345 28498.7971 57157.1339 82911.9575 79695.8452 22382.1503 34225.3605 52496.4886 31741.0206 49087.9472 19095.6584 38581.2856 21217705 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 34640.3652 59194.2296 15452.5025 15832.3398 11626.9212 81985.8216 49591.1909 24323.5294 18180.6098 35482.5518 345461.1507 19154.5976 17345.4114 59858.6382 8387.0158 8387.0158 11234.6588 23225.4906 20378.0453 14501.8184 19133.3001 27486.3791 11322.6701 8795.5955 15630.2537 12421.215 20878.5106 13469.8188 19487.093 9161.7104 33712.5853 17786.7447 9416.8596 197653.3298 117929001 arsc Metal Homeostasis Arsenic Detoxification Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 10193.6619 12805.377 24464.8375 30057.5833 3951.1162 4500.7127 4128.6602 66728.7696 8476.7706 10413.8641 7183.9082 17239.0257 17239.0257 6585.8543 6189.4054 29016.3162 4309.4283 4367.9009 5494.7487 12744.766 63498.9583 12401.115 3032.4773 7501.3129 5760.6374 3727.2614 5809.183 357975266 camdcab Carbon Cycling Carbon degradation Camphor Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7769.9696 9191.1501 74490.6015 6049.7195 5720.0606 19927.4491 2941.8411 10908.5761 17448.58 19646.1798 450998.1876 11277.2507 17899.6663 13130.1809 11945.5878 11945.5878 8979.1725 25170.0814 14087.3471 9464.5923 9744.4775 12454.4383 4531.3247 10325.6337 17544.8359 7321.161 29662.0629 15981.1538 19305.742 11647.2388 9198.5827 7257.9572 3526.1164 13883.1755 344222007 rubisco Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum fulvum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum; 608357.4889 12006.0747 16500.4724 13992.4839 7247.9341 28137.3999 25311.4814 13387.2391 45356.5522 38777.5518 27661.4996 1467026.3532 34071.0586 27611.42 24463.2203 20694.2339 20694.2339 34180.5162 76275.1386 29273.9789 43081.1364 363325.7004 53647.5097 30345.2975 20252.5076 28945.547 25022.0427 76735.8983 35468.1503 33111.0339 16347.2719 30958.9628 37165.908 25397.7137 41771.7691 301386268 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas syringae pv. tomato Max13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 206621.1438 550345.8905 80096.074 75132.93 61451.5099 25858.8431 372038.4154 163989.053 168486.0129 103140.3006 272801.4141 145382.8018 1180224.949 360427.0378 104669.8293 154051.0767 92217.7202 92217.7202 145451.3718 143925.4227 109078.7839 200929.3265 394269.1237 170268.1982 76880.3034 136501.796 89072.2211 170021.9931 421750.0573 126361.9515 166088.1293 170481.5793 235974.0286 111947.3542 92846.6452 278543.2258 110819766 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4533.8083 2042.1401 8567.6056 3571.1788 4556.7509 3747.9827 4423.1272 2783.3582 9205.4174 3550.5147 7557.2353 261881169 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 13490.8956 6124.9448 6775.5957 3966.0348 2820.9078 298385838 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 71829.5543 2292.3997 2774.0232 2625.6403 3214.4895 5517.2684 80464.1785 7541.4195 2589.6316 2589.6316 3183.9216 7704.3636 4068.3609 3617.9539 5796.0606 5967.7802 2068.2301 7429.9003 3591.8196 5633.0995 2187.1427 3010.3069 3090.1774 2184.8832 7252.0321 110823168 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5766.9093 10360.407 2528.8947 421953088 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5023.5461 2930.4714 3786.5154 5868.6297 68902.1195 4452.703 7132.1873 7132.1873 2953.4867 11731.4207 4639.26 5081.8339 4925.9528 3051.8198 7609.5166 10166.3441 4770.3119 5970.3769 3102.0897 4197.0381 4131.9723 2326.4537 8475.568 133912307 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 23709.2239 2825.5634 71605.9254 3470.7996 8569.5342 21962.5068 11417.5844 102158.3518 4295.4422 4617.4693 4617.4693 5255.7038 13277.6851 4517.2387 7174.5838 224413.5716 5134.5341 4210.7022 14236.1657 8113.3401 6330.5741 12978.7662 12045.457 69219.4082 3398.0382 8712.1577 4931.4668 2901.5675 357033084 amyA Carbon Cycling Carbon degradation Starch Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 7837.3948 2074.9857 3115.7135 2599.7703 5073.2266 4783.696 101486.5933 5381.419 7508.4638 2203.3735 2203.3735 3617.2837 10786.3075 8168.2023 6124.3953 9210.4232 5229.7773 4306.8971 4164.3141 6982.7254 2884.3155 14571.6573 6972.2108 12237.7244 4036.2487 5038.0121 4579.4589 3756.3424 9703.1404 854338 pel_Cdeg Carbon Cycling Carbon degradation Pectin Mycosphaerella pinodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Peyronellaea; 12973.041 5440.5828 6264.7629 5114.8618 6776.976 339885150 gdh Nitrogen Ammonification NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 319323.5631 35659.8956 11976.0468 18485.5711 8619.4516 17060.4948 99888.3564 29157.1512 15832.9626 42149.6821 51140.4921 606289.7872 46637.0981 96807.877 116952.1416 43458.2394 43458.2394 20362.598 85711.4793 35327.3088 63233.7596 92445.978 27990.7276 40049.8434 58941.1104 42129.0441 65517.1271 96118.2259 68678.4295 66759.3359 76253.4837 42662.3907 55214.3313 29254.0895 85484.7752 169620742 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6217.9813 2761.1008 4181.8289 4441.7954 3807.6642 3282.1038 9092.692 2210.9996 296136250 FBPase Carbon Cycling Carbon fixation Calvin cycle Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 6620.7717 3899.0552 1826.231 154504656 atza Organic Remediation Herbicides related compound NA Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus gnavus; 6894.0439 5739.4261 3826.0228 3383.8353 4891.8403 6232.1624 5271.6317 4082.4044 145472.0553 9509.8364 5745.518 7731.0971 2359.1386 2359.1386 4052.4851 13429.6464 6674.9266 7386.2486 13319.4552 10354.4299 2875.3299 5461.466 12000.888 4849.9646 19936.8326 10757.0349 10882.1981 5781.8445 6210.4536 6837.6674 4987.9321 9914.4474 374609195 rubisco Carbon Cycling Carbon fixation Calvin cycle Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 42295.6054 21309.4534 7393.5491 10817.6829 3694.7024 13172.6243 3371.9697 5579.6931 4705.7272 86739.2056 5768.2719 3959.7442 3959.7442 3570.7655 8561.5844 5328.4876 4868.1149 4848.3298 3866.9516 10696.5288 2386.8812 14617.8297 8829.1538 7420.0722 3284.2087 7524.5012 5635.6616 3140.6879 4921.6231 17223654 tutfdg Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 8275.186 8522.1181 7186.2693 5332.2744 5949.7995 32641.1181 11168.2726 4891.1124 96393.2538 6875.5244 4024.4587 2801.6404 2801.6404 3509.3979 13342.053 6867.1441 4485.3896 34397.8497 7736.5777 4000.8174 3377.728 8353.5731 6073.8738 16034.3638 7084.5769 7722.6124 18676.4126 5405.9978 3823.2406 3697.8111 8407.3754 215398380 silicon_transporter Metal Homeostasis Silicon Transport NA 3703.8681 2387.9356 4863.4916 4863.4916 6303.3264 5038.0721 5962.4081 2887.4233 3938.4405 150392261 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 16736.8644 64490.5836 30824.4496 15564.5538 4773.2196 19093.0521 14252.8637 13289.4768 19131.1757 24667.8147 12432.5995 494926.8779 28315.5477 18741.7488 16116.8352 10637.3499 10637.3499 19245.7229 28294.3202 27784.7257 20332.3048 29598.5646 24851.8152 12143.2628 9414.6963 28436.1558 10665.3417 40689.678 35674.4034 24856.2313 11176.8357 15008.7779 15908.0256 11514.2545 35048.7817 71402608 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. UW92 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12513.2086 20992.5219 36906.5554 13921.9438 11774.6589 6472.52515 9517.4028 162345.99695 6712.71505 11046.22455 7546.5323 15710.2938 11032.6975 10511.4247 11379.1196 10607.98965 22344.1898 5496.5739 8570.1891 7354.74625 4996.9329 10026.33825 59957114 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 34066.8975 8626.5992 10865.8776 9868.8358 20655.6402 9257.5759 10736.6983 7416.3063 34700.2436 19660.362 11495.6149 248058.5066 17191.469 22903.8314 31902.335 40846.6547 40846.6547 14016.9454 29440.2196 16809.1447 18253.3494 90827.1252 25930.7924 17023.0174 11334.9424 22563.2958 22585.3248 39451.1816 11758.3682 36853.2101 9226.6538 15308.4228 23018.1896 12697.0738 18649.8562 254820638 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 9940.6661 8885.1108 9798.9203 22996.3968 17687.8632 6671.6013 6326.643 2867.2822 7242.302 11971.1621 9960.7895 269642.4611 7320.3837 21061.0464 181597.5782 20685.1257 20685.1257 5792.7049 22478.6417 22935.8393 9007.4602 8329.0549 8941.6929 3014.183 7732.1322 10680.9895 7314.801 15033.5861 19705.1338 22520.94 4519.9598 47249.6891 15486.7907 9035.892 10955.2632 358752685 mer Metal Homeostasis Mercury Detoxification Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 24434.5623 19221.0291 42662.3416 12418.9325 31829.5264 5990.604 8023.3153 22593.6776 8112.8933 29097.8722 111945.1558 32721.7043 314379.1886 18663.8861 15669.248 17228.2738 23971.0244 23971.0244 13756.8403 26148.115 14246.6078 83835.7047 31176.7499 15629.6982 21457.0055 24073.7969 19241.1491 11223.9077 70373.6297 12671.3505 38991.2395 13725.6045 19200.0668 16483.3612 9971.4998 21975.2708 157285375 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7206.4904 7295.8151 8496.8129 5659.7206 4338.9046 3186.2008 8022.8533 11483.4471 5046.8037 145582.1068 8250.0176 7939.434 4949.9918 2466.157 2466.157 7783.8368 14110.7048 14272.8817 177171.5743 10116.8173 8306.2294 4152.2732 3985.3655 9950.8814 5067.8107 13228.3065 18437.8684 10288.6377 3951.7848 5107.5067 5032.7155 4182.1069 8754.2304 2765429 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 27651.1413 29374.2193 216176.0648 39798.1974 37758.1203 5202.1063 30096.0477 19346.2886 19356.4981 17127.2179 27318.4203 12774.5756 394737.8569 39628.168 22495.6739 25793.9002 15632.6371 15632.6371 15392.6767 31004.0049 21899.4899 22969.6637 39320.2331 46356.8813 17711.5241 12282.542 25608.6016 18013.227 66776.8968 70969.3145 28907.2443 15889.5394 14707.0906 21106.8744 21700.4322 36244.277 157804816 aps_apra Sulfur adenylylsulfate reductase NA Thermochromatium tepidum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thermochromatium; 10812.3138 6555.1441 2120.8851 4724.3162 62958.6073 4519.0935 3350.4848 6377.3221 4204.8111 5838.2181 2634.4615 6317.8989 2763.4548 7679.7083 5358.4991 6604.201 2190.7799 3831.7116 4667.767 2076.254 5146.236 153998965 dsra Sulfur sulfite reduction NA Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 9003.7822 5024.0107 2901.9993 6520.3206 5874.7806 3016.9736 134313.8169 8457.7451 5069.9497 5431.5702 3052.5204 3052.5204 4072.6839 16898.5595 8772.6184 9896.3438 13530.9692 14712.3722 2742.7154 5497.3809 8209.2168 3398.2793 12503.8572 12430.8151 10734.5957 3299.5931 5205.349 5990.2853 3253.154 12985.8539 259693982 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium nodulans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 21227.0714 11625.4802 20368.0071 44982.7918 32287.6945 19250.8632 12481.3246 9227.0414 22146.0097 23346.1537 11261.475 509249.1246 24808.7844 48146.2219 20545.5114 23281.8845 23281.8845 13726.93 36060.0435 20612.4205 19228.7438 21998.5462 24911.9659 12508.0049 11706.7546 33766.9525 12407.1601 47250.2613 28534.6471 31496.8049 13470.5577 13190.7109 15782.1104 12388.9787 28294.6165 157804738 APS_AprB Sulfur adenylylsulfate reductase NA Thiocystis violascens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 47055.7822 93151.2492 13131.9476 17031.5428 7155.5955 55335.758 9863.0106 121973.9645 21094.1911 20359.7077 508900.1517 16527.4163 19225.6446 19342.2524 10602.3622 10602.3622 8448.6346 26455.7726 13492.4412 18891.3596 20946.5662 28370.0599 12565.4735 11786.5963 16618.0949 13635.2854 43516.679 21608.6274 21193.8609 184230.6314 18138.8447 14969.4837 13647.2679 40788.973 285018527 nbac Organic Remediation Aromatics Nitoaromatics Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 20199.327 98650.5318 25273.9364 126228.4996 6299.1408 6339.1303 58095.8682 32712.8894 15936.9649 16952.0657 16129.6022 615962.5728 21839.9225 15524.4669 16115.6103 13877.7703 13877.7703 14090.9832 20755.4995 9912.7435 12699.2069 13963.0017 18580.4811 6238.9598 10500.9185 21249.4906 19722.3893 37775.3595 13165.0143 24716.9233 9458.1318 24361.3905 28365.8053 6258.7699 27805.2699 88778672 FBPase Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 4831.534 13021.586 56164.1952 4654.7166 31938.9139 5301.3674 194572.4644 8603.8834 9886.9668 3606.4062 3606.4062 7171.7561 6169.2315 4058.4201 7843.0739 5360.2255 14964.9039 8689.1856 9721.0028 5284.2839 3081.243 169620403 amyA Carbon Cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 64639.9589 6911.285 3484.7152 3250.3923 3351.2144 3416.6713 7331.9893 108277.4361 7868.1284 4695.8775 4486.6349 1939.8796 1939.8796 3404.6817 10871.6171 7127.3485 7673.7781 5403.8458 8269.9608 2926.1499 2492.7969 7884.8275 4011.9884 11036.17 5346.6798 6963.428 3460.6473 3706.2336 4105.6513 3946.5071 6855.527 322396064 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 97698.5604 19055.8758 198586.4499 31583.8028 71691.7363 16550.8259 194296.0315 64619.8241 97865.7666 38672.1953 93271.7167 118282.696 1618365.6975 43208.3261 62130.2904 131205.0936 99237.0143 99237.0143 114366.7179 199101.6611 59428.5015 230590.6333 425103.2486 142498.0964 65674.3503 63662.3801 181835.78 53448.2473 992263.7532 77719.1919 97520.3461 82232.5305 236514.4931 112619.9139 51773.4774 1076160.2965 302418412 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 18210.9788 42971.5658 8117.2775 15221.6013 28204.025 13187.0446 7434.77145 10466.5903 10462.8754 13550.7591 14046.3583 6764.5604 6945.6893 6945.6893 7212.37265 13380.529 9162.52205 25951.4604 4971.486 23272.0051 14711.3732 19155.4608 28495.1013 14555.0196 89070651 arsc Metal Homeostasis Arsenic Detoxification Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 5781.8551 363487.4065 33245.6219 7789.1621 5926.9347 5072.8569 4662.3774 7439.0605 3339.6899 114636.6816 8208.6021 6129.3785 2629.9719 2629.9719 6015.0617 10909.7059 6897.7952 8925.8017 7454.3876 14658.9405 5767.6821 15575.53 9318.2329 5494.4853 203355.5305 10063.1678 12105.1982 4034.531 7921.0395 32490.7648 5617.0732 9058.2285 144905819 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8047.5923 2552.4106 2934.1875 3665.8524 6375.074 12775.591 4552.4101 168511.2911 9179.28 6851.9497 4409.0782 18889.5929 18889.5929 5366.4596 14139.014 11313.0163 8524.8892 13424.3782 14073.8378 4729.2768 5416.2895 8168.5873 3987.1574 19223.8737 5807.3226 12955.2331 4589.582 7519.9723 7179.4902 3655.0919 13195.3001 357975286 linc Organic Remediation Pesticides related compound NA Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 52171.2594 13982.6942 16186.438 22271.4305 15666.1297 43637.2804 16093.8552 41483.785 14289.1731 29601.1689 16160.3547 346563.7025 39445.9998 23798.7646 46019.4626 15778.3397 15778.3397 23767.7521 40616.9819 21122.1059 225322.5148 50783.5391 305225.2211 19719.0404 16288.3885 27893.8959 11805.5083 51429.2428 15833.3508 26028.5243 26648.6349 19126.1086 20824.5653 20161.0124 73023.8337 349792380 nifh Nitrogen Nitrogen fixation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 11047.9952 7902.7231 5599.0598 13031.5235 43001.0068 5297.4638 6719.8311 11217.9461 170834.6181 6079.6124 12780.4701 5400.5268 5400.5268 6231.4934 9092.1214 30784.6574 7703.0942 6040.3053 10175.72 20304.5273 7510.0481 15703.9866 6049.7991 20332.9357 50073.7292 13630.5823 8047.1252 5023.7016 20164.31 4241.3318 313585820 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 167648.0112 29472.5369 86909.7135 124456.0415 31677.3342 50121.3071 53346.0421 90968.1959 79706.9731 129705.6883 105192.3108 133663.5795 3421552.8438 209368.5344 127172.4725 302040.3485 138712.3205 138712.3205 241732.3227 245100.4022 77071.0021 230708.6251 333561.5983 110941.9631 99208.8409 83814.2289 147243.4211 153126.0719 304173.2274 245972.1812 189267.4203 59948.1269 240102.5071 116384.7524 79941.5769 560504.2103 389691026 ppx Phosphorus Polyphosphate degradation NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 27213.6369 8061.2279 12016.8868 3508.2587 3219.1598 339611125 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 21494.0592 6278.9511 21775.4423 1010476.8269 40626.6547 30236.8013 68430.459 2895.0166 27773.217 18073.7416 41932.1775 1247403.2995 48189.6002 30099.0533 104165.9723 53830.3629 53830.3629 15964.4443 103896.58 38544.8709 13821.4677 19339.6467 6418.1117 9607.205 38092.6845 90693.1129 52381.4565 82151.5823 66186.0283 130742.2807 12316.4074 22549.6032 44553.691 13885.8533 9750.714 307726773 arsc Metal Homeostasis Arsenic Detoxification Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 22594.4596 6469.2818 14746.1531 9550.4036 7043.533 5374.0201 67432.0466 12888.8466 8161.3084 201443.0439 13667.603 14459.509 8589.4713 5312.3324 5312.3324 26794.024 23409.0757 11737.4384 11569.8332 14332.6517 8256.7547 7248.5824 6900.3444 11515.6546 6505.7691 7993.3553 5079.6479 12208.5048 8127.1862 9853.9125 9138.2773 7519.8476 25878.2774 127511439 nrfa Nitrogen Dissimilatory N reduction NA Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 216625.798 38038.2119 170487.2318 141160.7028 166294.1056 108262.5603 119143.7035 542147.8796 139804.1649 186543.2346 382286.7515 225795.9244 4536246.7241 212636.2186 169391.983 268655.612 209727.3417 209727.3417 110786.2755 218595.2285 126326.7808 158052.7071 261785.6831 299204.7301 106480.2266 207873.8583 285471.2136 188843.4406 411018.1441 265878.0508 199598.4086 112848.3164 176157.2273 218871.008 293259.7597 316515.4307 37925731 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 15801.5493 9362.4686 30878.5519 4964.2791 51202.0668 21040.3956 5849.8725 9748.7867 14251.5418 261277.1314 339759.3355 15980.6736 70389.5166 49762.0624 7886.2578 7886.2578 9545.7076 38183.9462 11094.8965 18099.6171 6573.8464 8533.5579 10710.4805 24084.2381 25139.1404 45581.3763 23098.25 13755.4774 16729.7691 48248.6496 79115.5713 20713.83 13177.6601 29705.882 210630992 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 12180.5704 16722.3365 11261.1537 71388.863 21498.0482 11901.6824 15124.2583 11080.664 14118.872 105845.5486 33553.5891 22792.0091 6602.861 7169.4708 7169.4708 9526.2137 13107.3691 9338.5948 7127.9219 54462.7322 7671.2128 21911.719 7943.2528 18398.3386 6921.8605 17756.6862 10492.4347 14747.1226 46408.9193 13268.4869 19018.7167 5862.2899 19182.031 150391525 xyla Carbon Cycling Carbon degradation Hemicellulose Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 5807.733 145575973 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 7917.6062 5792.5845 5931.3575 2236.5831 11847.7164 5994.6486 6089.6704 138201.8707 8297.6896 9187.8258 7193.3649 5286.2876 5286.2876 5864.8739 12553.8051 8174.1163 5963.3271 11475.6283 7280.3158 7739.2118 5114.5995 10744.3663 5272.2665 20507.3646 6540.1326 10224.7663 5998.3892 6140.1597 8586.7821 8750.9621 15235.0865 256558588 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 101547.1809 206917.5834 4890.073 18066.8785 21602.6305 48177.2256 9152.8063 21112.5241 37838.9336 40373.8921 754036.2217 28499.2362 20855.4132 66858.4032 95917.5069 95917.5069 26332.1517 29372.1043 31783.4916 68836.0848 36520.992 18315.7647 17700.3066 17535.8109 15282.8174 20883.7603 25291.2958 23310.2273 21839.488 10036.0193 18008.8271 73453.755 18847.0283 286674.6308 325915673 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 10599.0636 7072.967 6377.4374 692373.3974 16889.1781 16184.0913 14227.5068 6244.6078 8246.4632 12291.1279 8977.1828 315632.3351 8578.318 11504.286 15715.0643 19550.0022 19550.0022 9739.1692 22569.5936 13113.866 9786.631 12045.1568 14611.4442 11898.1218 9129.7971 14037.0453 11011.4126 40904.1945 23406.8589 19401.4775 28670.9722 8827.7325 13722.8666 8239.1204 34196.5822 295663348 aln Organic Remediation Others NA Paracoccidioides sp. 'lutzii' Pb01 NA 12531.7126 17267.7588 10424.2775 367997.9225 7872.43935 4351.078 2212.6594 15832.6695 17272.6432 8773.25015 8773.25015 5189.2739 17726.2919 7492.75225 6261.9934 9848.0192 20141.9812 3767.0579 27761.55845 4251.98505 19547.31705 11888.32345 11971.0448 8895.9758 10692.9635 3806.21045 6792.8156 115526609 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4514.3458 13512.5511 2914.2391 190586.6622 79303.5071 7715.0202 11192.9926 83955348 atzb Organic Remediation Herbicides related compound NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 96775.4427 7463.2367 7703.08 15071.215 40732.6179 10268.711 6912.9302 9492.9817 10673.5272 6211.4609 253034.4219 12657.9398 12138.1705 8533.4795 5457.4055 5457.4055 8246.5063 43997.8237 11681.9321 13131.4509 15557.5705 13295.8363 6787.2407 7051.4447 13814.7519 9332.832 22472.0276 6538.0895 15481.7403 10910.4953 8138.1416 8879.4726 7055.0639 21494.2578 151302329 aps_apra Sulfur adenylylsulfate reductase NA Desulfomonile tiedjei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile; 6433.0711 9625.4461 5014.268 4066.4662 6673.4689 5435.09 4098.8721 127784.7877 11671.6953 5017.6114 8216.2669 4492.2373 4492.2373 4482.4698 20384.7515 9011.4676 8347.82 9500.648 7651.6243 3030.1734 4938.858 8609.9694 5543.5422 8604.2534 4945.0692 11546.5755 4042.0812 3307.8586 9226.6803 6287.4966 6972.4825 294972251 merb Metal Homeostasis Mercury Detoxification Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 6791.8564 9828.7295 9749.9567 7463.6868 4631.4706 5660.1796 3912.6527 14737.9142 21902.005 5711.6882 195488.9449 6383.8434 9523.0811 5259.9358 3634.4938 3634.4938 4790.2144 9009.9715 7915.0156 11352.1217 12471.0914 7192.5985 4352.0622 5015.3832 10872.0057 4479.0886 16083.1334 8935.9131 13971.7091 4394.2315 6224.3508 8335.1085 4183.5926 11190.9619 354566272 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 18548.4917 1803065.5682 313353.4928 3030.5036 2863.8645 9536.8422 3908.8564 86249.2107 7103.7589 4526.1551 4526.1551 52302.7203 93877.4811 7152.6856 5998.9966 5188.215 4717.2998 7070.8265 9581.937 7570.2018 13728.9963 17305.4425 20660.0541 24614.1634 12691.5879 16647.9915 34412.3036 3660.8107 115374516 urec Nitrogen Ammonification NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 266766.7247 69837.2828 848947.1759 267879.4223 395615.4649 93752.6961 345083.8394 376030.62 168173.9858 207533.4741 215660.735 221904.8118 5088319.2647 695598.6992 277448.437 600879.831 227728.483 227728.483 122087.2932 317579.2842 172167.5865 243519.7854 218026.2174 490073.1728 142452.6425 135761.9266 336258.6991 276875.4568 482697.5602 347300.8744 296716.3633 123267.2329 260549.1095 158181.6339 173017.7912 262864.5199 218509563 merb Metal Homeostasis Mercury Detoxification Rhizobium etli Brasil 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7551.6749 5336.1867 9661.6317 3712.1372 1957.6853 5908.0548 7374.8374 5066.7284 172883.724 6195.0086 9696.4518 5346.4034 5408.9365 5408.9365 5991.3887 29374.9741 7989.6065 4601.2092 8167.3894 11562.353 3194.8725 6817.0365 8589.2609 5508.5808 13364.0706 6137.7614 9742.5003 5465.7054 9309.0734 7750.6089 6387.1832 13858.2619 357589284 one_ring_23diox Organic Remediation Aromatics Other aromatics Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 12391.3934 630840.9383 77273.5387 22601.98525 5309.1723 12406.66 5673.3085 5639.1963 15111.3911 6850.0166 10208.045 7443.944 9598.93275 9598.93275 14392.1314 6345.89265 10848.29105 10632.3736 3771.3712 5489.11315 13035.3225 17286.7675 9261.5182 14320.151 5583.1524 9344.65205 11135.58445 8758.0233 12816.2401 339483888 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 23102.0638 17975.3548 9582.5266 109414.3382 65848.421 25317.9322 12783.0003 20288.8336 21408.3408 36052.069 42295.3721 16396.6121 762408.7789 28089.7727 50435.5792 46175.7617 30469.4397 30469.4397 14409.3008 124999.7194 31228.5283 24731.662 44363.3885 29566.6543 14113.6276 19513.511 54293.7352 19911.5784 48721.6211 13910.2442 50150.066 28289.34 23196.9581 29888.0652 9581.2046 45250.7909 270511931 vgb Virulence Antibiotic resistance Degradation Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 108558.5752 22854.6336 38705.0551 117434.1242 16740.525 23052.1797 45577.9382 14398.3472 50445.6979 43127.9705 61182.587 1759799.6369 55880.1358 60816.1813 77699.6913 68137.2755 68137.2755 38065.9117 90576.4629 32011.1968 30369.212 92433.8876 42365.2176 26862.4401 48538.486 96463.8899 19839.9213 112990.7654 80821.2389 103643.9034 40585.0975 47210.2804 73006.2281 29782.3775 45803.8796 219956344 tehb Metal Homeostasis Tellurium Detoxification Anaeromyxobacter dehalogenans 2CP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 19438.385 11101.3489 18102.0336 27686.8681 6058.8728 16328.1918 9708.3898 7046.1178 13960.4455 15282.8505 8846.9989 247263.341 18215.4906 20596.1268 11851.5723 8679.8137 8679.8137 16425.4863 24181.3378 16527.9051 15043.1729 20502.0407 46078.5917 13065.352 7875.3336 23089.103 12377.5297 35436.4995 13818.1544 22941.9889 7560.3718 10932.953 12551.2306 12174.7454 20467.1372 88866204 pcag Organic Remediation Aromatics Other aromatics Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 95089.9517 7429.6766 4751.631 20068.327 6762.116 22229.0757 20198.386 11932.4417 16464.1337 8083.302 263524.4898 18837.4813 28259.5762 23312.6822 11116.8498 11116.8498 6633.1909 42263.2541 8418.8349 19072.9114 12644.0564 7017.2409 9365.8474 12979.8872 9628.6636 12203.4483 87784.1722 12466.7324 14192.1606 11326.3282 12221.2079 17879.1032 12841.1468 14022.9317 170027467 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 12621.1737 9425.0399 17505.7106 7657.9084 49734.6914 17083.6259 47389.709 32696.6776 11204.1475 22846.4147 13919.7096 290921.8429 14610.4303 12014.8013 11012.5842 12827.4367 12827.4367 7977.7072 20212.0231 11713.5766 405866.6959 18135.5618 18161.15 8166.4439 13936.003 15763.2696 11376.479 34413.7405 15589.4002 20833.8646 11028.0636 15629.7874 19012.2859 8005.2307 17843.5247 209401864 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5463.0291 5117.7645 5178.0876 22400.7693 12976.069 6917.7796 3974.6263 4643.6868 14031.1443 7046.6938 367477.8897 29942.3743 11600.4614 27365.6718 7812.2751 7812.2751 8903.3109 18271.8972 11761.7556 9075.0251 121929.0153 9172.4171 3627.6713 4331.1271 15809.8274 7167.6942 23074.9822 24988.3406 29822.6646 5068.6524 6940.4815 9720.9793 5484.9321 12261.4891 153962594 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 345870.6925 25756.414 186751.6108 183193.1922 166554.5312 252596.6998 325720.2402 331970.7241 162685.9956 153703.0245 173615.6087 141866.7473 2702566.6183 138412.4942 143234.2185 285867.4231 183045.2578 183045.2578 204231.1716 182046.7829 164396.2315 132014.7845 241615.6655 122353.6992 137733.2518 121340.8231 133034.1234 156026.3269 355609.5794 85413.3018 205978.0477 119312.8118 108102.798 151306.5738 128989.4443 370482.3209 308433482 terc Metal Homeostasis Tellurium Detoxification Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 5741.2377 12945.1032 10941.5363 16017.9441 3901.2641 11728.366 5952.5178 26526.5657 9759.5672 80356.0608 9744.7657 8026.0772 5609.7222 13507.1849 13507.1849 4584.4746 12989.1571 16603.4959 48149.0249 7357.3798 5055.4502 13053.6327 10765.4262 13891.2538 109179.8239 13189.2317 19799.2904 6435.1753 5572.0082 14494.438 6266.7431 11943.6606 147831549 ara Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 14225.2977 8901.5354 62251.8333 12495.0647 9242.245 6505.6475 144397.1736 13002.6001 21274.6463 11794.2599 374719.4016 17491.1534 14803.9871 23518.7387 15884.0163 15884.0163 10807.2826 32900.8777 17920.7082 18221.8944 23604.8269 23095.693 6954.8166 19334.3055 18702.2961 18328.8236 35411.5916 25907.6852 22561.5381 11200.6448 11233.5275 17954.0421 11102.1956 15514.4154 5442422 pme_Cdeg Carbon Cycling Carbon degradation Pectin Cochliobolus carbonum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 7861.841 6643.0115 18513.9858 3515.1005 2830.7591 4981.7725 16687.153 6734.0428 5553.0056 2386.2408 2386.2408 6049.7131 4754.5329 11173.652 7737.2922 8119.0796 13847.9697 3561.2484 5036.9986 4348.9747 7694.1248 160884192 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 20119.3076 13897.2264 8792.6202 13548.7047 6531.1855 6387.3198 4370.4664 9480.7804 20789.9088 6706.0813 293093.1005 21937.7722 56990.0931 11765.0822 6441.156 6441.156 9688.9269 20836.8542 16896.5374 21843.2619 17640.9157 22696.6486 10542.0288 14374.4604 21431.8741 8677.7624 41103.4771 17013.5778 26376.0767 11543.5125 7600.4079 15106.0211 9907.6755 22758.2584 41386477 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lepista flaccida superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Lepista; 10974.5136 39569.4709 7440.3358 11739.52 7593.4037 7737.252 5942.0946 6617.7474 9602.7615 10933.2242 113392.4424 11816.1839 8819.8964 7121.2395 3543.5942 3543.5942 7635.8656 13441.1614 10238.2256 16928.4994 11896.7035 15033.3774 4903.5811 4502.9372 10197.4844 4981.7842 20676.6027 10236.229 12528.8113 4718.458 6909.4913 7043.6214 5513.7137 14123.4002 119465388 mer Metal Homeostasis Mercury Detoxification Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 5226.4267 7104.5887 4075.5701 2796.9126 2555.0028 4462.0569 4850.6145 5409.8858 96428.7598 9654.114 4950.5913 2136.7935 2136.7935 4794.416 10289.0347 6923.0154 5262.5454 5766.6971 5516.9054 2853.8086 4080.0676 9284.0713 3165.6884 12463.4311 6044.0792 8742.6668 3858.4287 2588.1458 5700.8085 3783.7095 7850.9818 83310479 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 4731.6798 2442.2903 3061.494 4054.884 7401.135 6609.3243 4191.0482 2344.5526 5803.6683 3491.6445 13195.6502 317127272 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 10237.1175 90336218 mer Metal Homeostasis Mercury Detoxification Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 95356.2924 16296.8257 52447.4196 42868.9727 199982.654 48799.4261 48964.4177 155512.7553 53867.3219 53835.0132 96063.9706 198307.0375 1140817.004 84207.9785 184986.2977 143547.89 95826.2556 95826.2556 37606.2483 184976.3091 75746.7092 31210.0592 87647.7692 29570.4928 30834.1805 61149.1674 119252.888 62696.6037 182250.3263 77806.2565 125403.1093 38732.6375 65856.9208 55955.1969 48088.5028 134660.9692 348028270 cysJ Sulfur Reduction NA Glaciecola nitratireducens FR1064 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 41116.8979 33857.3438 13934.9645 68242.4052 165479.0134 89668.1322 16942.0093 34385.0448 18144.5593 31984.8922 43432.7198 40727.0556 601104.9553 39564.4375 85810.8424 58280.6661 53123.6421 53123.6421 23282.3458 32617.4795 23442.5476 31831.6938 31052.0545 86630.3295 16947.1879 31223.391 97047.2952 21614.7403 148863.5868 47143.3327 61353.6615 39953.9759 38417.0492 36624.4648 17322.2953 38613.9843 188029873 cysJ Sulfur Reduction NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 85431.3328 13145.5275 705532.9772 17882.0675 6146.4041 11236.5781 41437.485 24477.794 23830.0333 89632.3792 63630.1851 564430.2874 64158.4257 66699.4186 52734.7465 73404.9263 73404.9263 204205.346 51257.7164 28085.7457 37286.7681 144087.8771 32230.3588 133616.5794 76383.912 134338.947 117660.3328 59916.5767 46595.571 74043.2956 25473.6485 23953.0999 103391.5069 37640.8263 58003.1908 398215619 ben_bcla virulence NA NA Phyllobacterium sp. YR531 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Phyllobacterium; 8737.4059 4397.0849 7702.6265 61976.0586 3647.5319 6060.1572 8662.4471 3330.9813 116535.9958 6548.5571 12011.6361 2375.897 2375.897 3588.9583 8555.1651 5127.4086 6378.5685 6345.2178 6057.4239 3511.7676 3684.0547 7810.4047 10230.3652 14124.4543 7457.8953 3253.1504 4692.2844 6813.1847 3816.6857 10643.2507 33571857 ppk Phosphorus Polyphosphate synthesis NA Bordetella pertussis Tohama I superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella pertussis; 404019.5295 109902.4774 271918.7513 666726.1453 184060.5055 122052.2188 226821.4653 405534.5586 326856.7959 137239.2327 154571.8494 134922.4191 2500533.1184 225837.1723 484758.8562 205038.2213 194165.6073 194165.6073 181296.8632 193478.9398 202315.5526 142359.4283 238644.2341 1044288.6665 168567.3567 114024.3767 207763.2113 119570.7075 421482.0081 130668.051 425383.9415 79587.4966 127703.0105 196243.9131 155034.5016 203634.3433 325556283 lmo Carbon Cycling Carbon degradation Terpenes Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 11029.9409 13938.1672 17865.4863 10133.3257 41375.9961 31562.8763 9541.5644 30208.5134 223504.7585 56852.2058 20541.3525 15491.3322 13047.9617 13047.9617 14455.254 25622.5109 5800.4353 59920.9893 85475.8236 21712.4554 8887.0507 33910.5996 50811.4648 11001.0076 195806.6398 20272.6649 23176.1952 12723.4025 43088.781 21485.1835 11985.2051 39157.2445 395762511 poba Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. PAMC 25724 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 3929.7378 39018.9506 13202.0903 5561.0108 2866.4739 2006.3124 3291.2646 24783.4364 4202.1283 3736.1215 17383.2159 10195.4743 6087.2977 41359.6576 13841.071 5019.7371 3437.2681 3743.4624 12068.993 10435.6824 8783.5327 4292.2814 8694.0172 4952.0681 2342.5625 5700.8336 49612946 trze Organic Remediation Herbicides related compound NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 38657.0923 19405.1937 101478.6912 35574.2486 5639.9577 38976.817 33092.1089 154055.9004 37205.7661 78635.9367 678894.4962 39470.0918 117060.6087 33752.258 34178.6612 34178.6612 57597.5426 41072.1232 64520.9733 36859.4229 64041.5418 106571.9768 169448.6259 29720.8244 35974.8303 32013.1604 51025.3952 53552.001 96444.6062 15744.3206 22151.6862 47992.5761 22085.4438 47914.4595 283952463 B_lactamase_A Virulence Antibiotic resistance Degradation Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 14954.4161 11177.2609 30148.1553 42212.9899 27308.5976 4250.4663 233369.4455 3677.0484 20160.4632 30665.2715 33183.6605 437519.7915 11882.7779 53662.5846 27741.8168 13420.3825 13420.3825 12121.9972 27652.6864 15670.2465 6698.7975 6609.8105 14193.4311 8735.0377 18363.9667 73962.0518 50627.8493 49728.8493 151359.5348 34072.2457 15213.2511 14124.5776 19228.5343 5030.4612 7600.9023 333478681 nahf Organic Remediation Aromatics Polycyclic aromatics Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 4773.111 63592.6515 11237.3827 3823.1549 7411.6029 2155.0233 4876.1941 10256.0647 3217.514 136578.407 8556.7006 6079.6691 4962.6986 2846.4735 2846.4735 2945.1893 9794.1168 6035.2538 6048.5992 6061.2833 15810.0144 2783.5741 5728.1453 21035.3756 9536.2947 15509.0911 6659.2617 6857.5793 3699.181 4847.2094 5483.846 2461.6803 7573.8895 359836370 chnb Organic Remediation Other Hydrocarbons NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 10619.3966 15957.5916 2368.0621 36722.0254 5370.8265 12883.0226 7187.213 117329.6095 6393.3992 62748.3711 2942.3667 2942.3667 6954.6846 45837.2753 7605.5625 5258.6355 6290.3605 15672.2939 5283.8802 8773.1544 4117.4864 12135.528 7609.1664 6470.2739 2888.9282 5738.4101 4880.0602 3858.8263 17583.6935 157409420 dehh109 Organic Remediation Chlorinated solvents NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 5343.514 37112.5448 77364.0952 2842.5541 2842.5541 10629.7851 8348.7725 4988.5991 6025.0797 13050.2054 305857432 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 10798.8334 12892.7765 27980.7563 16093.5804 7764.2441 5397.5812 2174.3213 13549.6926 10125.8767 6106.1491 689120.978 15103.9617 11589.7699 11924.2563 5991.3075 5991.3075 8025.8942 24069.578 17780.6221 11228.5269 14363.3286 18366.8181 3999.8868 6943.0283 25398.3262 5332.6496 26202.9362 19714.3322 17040.4368 17223.0573 8575.5404 14301.905 4820.8237 17787.6911 116099534 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 8319.0612 6609.8077 6377.5366 52541.7804 5775.0783 5996.3086 50530.4054 3793.8672 7485.0728 38407.152 85526.6265 370057.8069 33359.5 22496.1804 17135.8168 8751.2437 8751.2437 5640.9468 29823.7225 64178.2584 12310.1181 202373.6426 30002.5274 14897.6764 11013.8783 31145.4351 21389.1695 188085.7418 133950.3314 30548.9152 7247.3759 10807.9144 18287.6069 6886.9298 28947.5874 304317294 nifh Nitrogen Nitrogen fixation NA Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 6745.2854 8115.5604 9174.5289 12067.1054 7478.5968 7438.2545 4209.677 5230.4016 7850.9472 3190.0888 193148.1547 8994.474 6898.2155 4560.3038 4560.3038 5694.291 12285.9222 7296.0387 11181.0487 9913.2815 11445.5271 4147.8248 3417.4121 10328.0859 3561.3854 13877.6961 6426.9735 10658.0753 4065.2953 5558.0193 5153.7379 5354.8239 17787.0775 134094017 dehh Organic Remediation Chlorinated solvents NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 3631.3836 8986.8159 3198.4613 2493.458 6927.5752 2723.645 2723.645 5654.1499 5402.6696 4291.8894 2587.5715 2215.1269 2447.6286 3744.0574 8665.682 134101899 terc Metal Homeostasis Tellurium Detoxification Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 27096.1357 26167.7992 4747.5706 16352.4278 10276.0443 5281.7524 16796.1421 7243.1683 11912.3025 30740.5236 13763.2009 6295.9169 180603.2066 24183.262 133937.3696 5445.9505 18188.6949 18188.6949 8425.3614 24820.0713 10296.7169 13275.8152 13238.7141 16891.3027 10472.8046 8421.5425 16939.8167 11091.3088 23942.3829 17415.8887 26783.6942 9655.1394 12872.8385 21399.8445 8514.5655 29627.6277 157850532 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6802.0575 6027.4833 5953.2301 3585.9769 3773.1617 13159.6625 4571.6344 6996.7328 6434.383 3613.5345 4506.003 2527.3194 2884.6942 16480.29645 291345602 terc Metal Homeostasis Tellurium Detoxification Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 33579.4542 13338.2304 21707.5236 28803.3468 34286.9901 20086.7052 53529.3969 25096.3705 19536.6097 23268.1117 26409.4211 15677.0194 683167.6871 37614.062 40426.9154 33758.5051 17981.6018 17981.6018 19107.5534 26625.3085 20070.4692 33591.123 36018.7773 143210.3233 13576.4419 18952.9305 38906.6973 13580.9873 61652.7195 30964.8596 35717.4988 17466.76 20487.7358 19102.5364 15968.7686 43974.2095 109456321 pgk Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 4108.8817 12366.7126 3756.2254 2335.2847 2335.2847 5761.1564 7626.024 262086218 amyA Carbon Cycling Carbon degradation Starch Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 9621.0938 17192.2122 30940.6739 19821.5234 7319.1986 12772.7924 29398.4062 44343.5688 383365.8669 7352.8874 36476.7395 18501.8255 9783.7276 9783.7276 12508.8039 35675.1621 10631.4116 18499.3492 145199.4927 18338.6386 22768.8436 13645.2806 29503.4759 21870.8156 112257.714 24737.695 43631.4901 21162.1546 14884.1396 17349.4275 19418.0546 33621.973 336103970 amyA Carbon Cycling Carbon degradation Starch Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 28620.2059 49044.1555 7378.4346 45705.7466 9549.5653 25452.0294 14823.7808 19983.8045 31088.1763 29181.8284 43630.6592 613453.0167 44389.7867 20827.3116 46189.6228 21559.5185 21559.5185 11075.2666 33311.635 16541.792 24839.5786 51637.3597 18363.0218 14434.6885 13398.1664 29353.5266 33937.1485 93073.3572 33483.6096 39302.641 9384.7846 19739.872 32448.6987 14903.1948 22236.53 116687097 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 46878.8444 22568.9142 35805.1404 23676.82 21321.6803 38488.385 31772.1177 17596.005 53620.8369 34413.2151 27836.2614 2367295.8702 31786.2502 34254.7561 33440.5638 39724.1428 39724.1428 16969.4121 60686.6582 23883.8884 28123.134 68114.3515 27800.1525 18894.2594 32681.9974 40919.0788 38326.5768 82422.8881 36411.5844 49169.2433 22251.3009 126395.2626 34680.706 18317.8125 159577.605 226347084 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8690.4303 10604.0251 132731.0675 2936.3835 5000.4434 7441.663 49427.6357 3534.1206 117885.4859 5551.193 32661.458 10616.608 10616.608 15668.6869 7135.7135 6309.5601 109408.5095 6299.7566 2674.79 3576.9133 10466.1368 5145.5258 21706.0169 73852.5039 8574.1673 4138.27 5673.7744 20033.5917 4862.5383 6211.806 63029763 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17032.4641 21500.0413 14012.3773 11484.3807 6732.3774 11198.0796 9764.2156 15943.9311 13202.3844 14633.1332 413541.0097 15431.8484 9682.1429 31039.3954 8958.0546 8958.0546 8163.7808 58075.9861 12202.5913 9356.2193 20975.3543 15533.8515 3761.4214 13135.1341 15064.5176 6525.2173 54945.4524 52057.135 23222.4008 9105.1059 23054.0732 43062.576 6769.3608 27907.8183 300501781 amyA Carbon Cycling Carbon degradation Starch Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 3890.375 4052.4262 2516.9473 2126.3398 3965.6459 25782.6557 104042.3604 11404.5443 4599.4724 2096.3232 2096.3232 2633.9275 8776.9536 4871.8352 4398.7595 9104.6899 3863.5541 2931.3416 6377.105 2042.8138 9315.6746 7687.8926 2555.2352 3663.7503 4533.8022 2003.6028 5142.5093 87280986 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16411.6861 10575.7047 7192.464 10527.4823 15070.7811 5282.8217 5259.6181 8512.6757 87661.5304 21390.8109 15171.5615 14727.236 79924.5516 47165.3096 46961.0455 10169.8756 6535.3298 6535.3298 14695.8613 13541.5943 7560.1123 10478.777 36359.958 6039.7821 4696.6495 5651.6098 9520.7473 10607.5617 17062.2563 32542.0033 21146.9717 5343.0764 11136.5751 10652.7721 6805.6788 53260.7688 85105950 nitrate_reductase Nitrogen N Assimilation NA Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 18826.1951 21626.2239 37658.6516 34552.5517 30268.5423 15379.6096 9073.0691 33968.7944 16313.7382 14534.7896 81917.2598 54003.2066 425245.2328 28188.0947 33218.0341 38509.2746 31023.6547 31023.6547 9702.4271 137869.9452 61298.8878 53276.1374 36097.4596 22646.2365 16196.4404 15898.8859 205630.9684 7230.4082 145118.875 24376.444 41107.2691 19313.9191 22358.798 17126.2018 7769.724 65345.4521 325964840 catb Organic Remediation Aromatics BTEX and related aromatics Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 4323.1142 12493.3708 4351.0868 3185.2105 3101.7678 6092.202 4438.4027 79326.4815 91264.94 6261.1161 11562.3462 3467.539 3467.539 2707.1176 5170.4314 9961.3781 6737.3674 1210163.8474 42211.8605 5299.7466 10196.1419 3048.0278 2246.974 21425.0535 4539.3548 3026.199 5508.6957 192764370 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15030.0017 12177.4267 15224.9488 17247.2953 8883.155 13869.5716 34928.2256 17048.5275 16459.2094 28329.2392 10658.2358 346439.0494 22344.6931 17845.1232 34127.3835 8928.6868 8928.6868 11857.6495 25745.4758 72089.5575 18203.0763 28570.2385 26940.3469 11136.6849 10588.695 30004.7286 45191.4166 45243.5346 27825.7468 25506.0043 10260.0501 17637.1673 14570.8371 27019.8444 29685.2698 340778104 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 4663.3077 14266.1106 3001.5121 2734.8596 170043.0239 6315.0191 6168.2742 73926.7301 13566.9047 10791.9345 5067.3153 5067.3153 3096.7547 9618.2092 4955.6317 2274.2636 4929.1332 6249.5883 3796.0003 123202.3318 6043.9695 3349.1078 8648.8689 33310.1198 2400.0602 9819.5347 177672538 ppx Phosphorus Polyphosphate degradation NA Micrococcus luteus NCTC 2665 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 20942.9922 21546.9653 24499.6473 16721.9971 15392.7173 18602.4637 20302.0736 10390.3998 23214.3337 56951.338 26815.2747 596296.1937 41430.6822 97232.4732 91414.3949 70321.9258 70321.9258 22951.0382 39990.3092 10030.659 237259.1443 276432.028 19062.2044 10211.4082 31064.7453 32162.1981 28994.1725 188364.1339 121999.8756 34727.6706 26783.3938 33554.1736 27294.9355 38657.9467 27266.5113 119384830 alkb Organic Remediation Other Hydrocarbons NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 24331.4028 27443.6704 23967.6941 8566.3918 37097.0468 25977.5768 123843.0238 27498.3753 23170.4007 55105.4361 25076.1117 29782.4903 351476.1132 40706.124 35981.5364 30065.336 27441.4351 27441.4351 37860.6914 42623.2998 7603.7257 362341.4133 190198.0776 11659.9134 10911.9858 14212.5035 37243.269 42279.875 48056.4113 22921.5365 60126.4951 19473.3265 34553.2068 16011.8652 25579.5595 31595.3506 126732364 phn Organic Remediation Herbicides related compound NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 83980.1671 30942.2493 137084.5874 38508.0051 39108.4383 27286.7912 61580.1552 94900.193 20481.8919 53249.4485 56833.7548 81742.4272 941980.0997 112021.3638 117903.0125 427739.4973 80414.3589 80414.3589 20954.1876 52023.8009 23760.8961 210275.7997 128454.9499 29451.3395 31158.6248 30543.6792 64409.1395 62239.8008 82433.5034 33356.3923 56854.9145 19395.9258 36813.936 88309.999 26638.2944 28781.4536 2062565 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14811.8246 13770.1409 7802.2595 5740.5924 10959.8415 17566.6542 22212.0595 14758.2765 25193.264 8977.089 8882.7186 9888.5244 6962.6064 6962.6064 2685.618 9497.1621 5592.657 4521.0658 14056.0407 6622.6943 2837.9526 6462.0643 9207.4851 9747.2148 56137.3807 9193.6541 8818.394 7804.763 5007.4639 8460.1888 31572.6722 208970636 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 33280.0839 28508.8512 9585.2899 2516.2472 3929.4688 5403.7432 8850.0247 2860.3267 117210.5931 5533.0883 6088.6742 7619.9873 4069.0195 4069.0195 2607.0758 16672.8911 8823.4111 5186.2606 13299.3438 7939.0367 2660.3916 8537.8847 19574.888 2771.6507 16168.3252 5071.3119 9494.4622 5916.7047 4867.1202 9482.2512 2550.0628 6566.5376 213536713 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6104.7795 4948.9836 2419.3314 2433.9241 5947.2831 5731.6929 5035.2916 3021.4772 116802.2976 8728.586 4982.5718 4485.9182 2747.7806 2747.7806 3672.5145 9753.9172 5754.4034 5547.815 4409.4691 11857.0696 2485.9381 3590.4357 8196.1716 4069.1975 13295.9772 4478.0421 5935.6113 3019.9319 3643.5106 5375.7187 4180.7513 9448.359 351717299 nirb Nitrogen Assimilatory N reduction NA Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 26464.391 19951.5849 27247.266 69072.2003 40492.3644 18477.7157 34517.6845 20962.4833 21875.3994 21741.3929 29851.7163 13996.5512 795448.0178 32133.3803 33875.2501 28206.2425 15340.4783 15340.4783 21977.4867 39577.857 27419.9957 41738.9448 29667.3447 51181.8322 14588.1332 10976.7439 38907.3227 16268.0716 52294.8461 28849.0943 37445.9302 17287.7337 16001.6515 22424.9119 14160.8011 54610.8382 258512385 cysI Sulfur Other NA Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 12384.7032 5459.2549 12875.9435 7103.1406 9944.4944 3964.2476 3483.3714 63869.4897 3897.2783 25929.0786 6073.468 4507.7637 4507.7637 2484.639 22252.0925 5508.0596 9598.8223 9151.5406 20011.5007 4012.2762 7102.9644 8868.2355 5014.5119 7852.9627 7631.1251 7679.4286 4369.9439 7057.794 5404.5628 7394.6823 7526.7505 352962562 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4466.125 20848.9469 37674.4954 5180.0404 21042.6253 11886.4702 3062.1356 5707.6849 2629.137 113382.7572 4584.5249 4153.4452 8429.9268 4656.1255 4656.1255 11202.9512 7442.93 3768.5747 2038.9973 2497.6284 10146.7245 5532.5954 12615.2127 5897.2785 6940.9153 4067.9279 3420.0663 3024.6185 217330181 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30978.4417 22121.8429 24587.1903 60979.927 12583.3568 26934.9288 67608.1163 14140.872 28324.0257 32886.4808 39652.9837 606343.1886 33873.0824 32557.7779 24845.1678 18314.1506 18314.1506 118870.1628 42724.4284 31614.9893 22881.6892 40930.5222 35427.0064 20997.2085 22162.7456 48797.0009 19644.6304 105174.8046 42990.7133 43655.6492 17166.1998 34938.3307 27282.1812 25231.7406 38607.8729 385654586 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4329.8029 33163.7147 2302.7724 3556.0771 3269.0472 4641.4435 4204.1183 6689.5518 3990.4215 3666.0768 4986.2073 5227.1594 2644.6559 4102.0563 4779.8668 4636.6257 11723.8207 10347.0104 2307.8792 3734.2392 3904.6422 2337.4342 5133.2186 330508955 gdh Nitrogen Ammonification NA Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 97444.2916 20728.4672 63034.0592 51185.818 37600.7194 26425.981 455543.9973 113096.0494 72186.9665 49726.8594 55431.1721 48931.9347 4605069.3842 52375.2666 69747.9933 96721.1672 74687.6497 74687.6497 57960.7758 83911.2237 45500.8913 53248.6712 43952.2187 65563.7158 36325.3457 56530.7973 72906.188 66940.9928 140993.3596 48189.4722 171215.0726 38691.2001 49345.2058 62041.0848 75317.1467 94411.0128 164511893 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 31802.7611 14167.139 5129.6331 35528.4891 7203.6628 5495.1716 12248.2098 11648.0397 7588.2907 872724.272 10387.5495 37338.9212 11614.8114 5835.0016 5835.0016 7722.5666 16499.0972 9952.4777 14645.5706 54539.7803 9258.369 11496.32 9264.9102 11109.7678 6676.8041 41702.428 14061.8464 19005.6183 9939.9062 7169.146 19163.0909 6889.0734 10138.4109 257458839 napa Nitrogen Dissimilatory N reduction NA Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 5673.1168 3938.6667 10445.5813 3934.4609 3671.458 58989.5931 4432.0595 4677.6499 2775.6014 2775.6014 3730.4304 5884.342 2658.9599 9507.4364 4259.3791 9414.7869 5457.5057 15447.4285 2674.2069 163777270 mer Metal Homeostasis Mercury Detoxification Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 8790.7022 5328.4792 51315.4254 11381.6528 3007.5779 9936.1922 10725.8531 13795.1604 4818.6486 144214.0322 7179.364 9612.413 18146.3011 8650.7021 8650.7021 6184.33 10531.4498 14379.352 14771.5729 2878.1104 15098.9958 7407.7522 14164.6321 13446.1913 15507.207 4402.6238 7537.9971 6010.3745 2953.5026 256378193 mannanase Carbon Cycling Carbon degradation Hemicellulose Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 4893.2574 6700.872 22028.0272 4697.28 40154.9589 5550.8664 37681.769 65475.5691 4423.96 138498.6992 9977.1484 5329.2076 5329.2076 19895.4589 11514.0874 6554.9115 5342.0438 7329.9977 6024.0888 3190.3103 6624.0414 8353.0946 4876.4384 16801.6374 8231.6688 9494.0398 3999.4794 10572.5426 5547.7473 16082.766 7179.9859 149948679 arra Metal Homeostasis Arsenic Detoxification Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 4917.9422 4311.9229 3862.4045 2197.8467 2362.1303 4813.3861 6481.5848 2782.6259 94916.3745 6238.5407 4986.7927 4986.7927 3116.9051 8620.6667 5381.8859 3411.1614 5281.0607 9346.1776 2255.7692 2700.0096 6382.8325 2337.1406 9667.1584 4984.2037 7932.1043 2391.0975 3969.1721 3726.8693 2519.318 8289.0919 357383072 xylanase Carbon Cycling Carbon degradation Hemicellulose Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 20111.3044 14052.7507 15334.1682 9320.8689 336166.2433 29187.2018 12826.5155 6074.8865 33045.4405 7580.575 16262.4849 256108.4987 13741.9197 16925.5285 13063.3547 81399.3209 81399.3209 8420.4518 25273.379 7525.6287 7854.0194 11620.2509 7152.7679 4907.8282 4852.6465 20438.2197 5298.8619 15344.7239 13590.2756 22203.3041 4730.8585 12318.7884 10132.8885 6726.5093 29525.4987 315417533 trze Organic Remediation Herbicides related compound NA Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 12049.3964 7743.1482 11465.4893 27411.4319 25672.5792 16193.3446 9853.6873 9804.6702 16339.119 15766.6231 240301.4396 16223.1698 21154.2635 25569.9771 5362.9127 5362.9127 50399.9241 22305.6552 16732.396 21461.3391 25792.7293 25613.2606 10172.1418 12283.9054 19692.176 8897.5857 31692.9312 20028.0961 19370.687 9248.4898 12880.0086 10916.7692 8578.418 28112.9392 29828701 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 9410.808 7051.4338 8111.5519 125848.6942 6733.4319 53827.6136 3086.3398 10878.2659 5358.2114 126608.5264 9947.8153 8184.1955 15734.9302 4645.2622 4645.2622 4336.2295 9846.9098 5379.534 25667.2111 6674.7944 4505.1325 12797.1623 6898.9375 10160.8444 18948.4862 12908.7529 18702.0289 10260.7317 4605.0449 7977.0579 10405.2792 6098.9652 117188513 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4517.775 881974.0532 3415.3401 59408.6122 8616.2944 91703634 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 16373.925 7889.7999 9755.0632 11878.8605 22149.4279 240572.2268 12686.7757 53983.573 10548.2147 25567.5129 14042.6231 243532.543 41708.7058 14016.5338 23407.3971 21390.3018 21390.3018 20194.2906 22148.7481 31411.5659 31172.0266 32316.2545 94946.0446 15430.1989 21265.9836 22088.4231 11016.7784 34691.9443 19706.9364 50891.1312 12727.0588 12900.9314 18464.4907 11905.9027 36490.4634 317968447 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 49612.2968 7784.8249 77790.5268 19262.2128 5290.0385 24664.4643 10555.8078 26984.9163 20326.8793 14751.1497 16560.671 394676.3867 19243.3096 19042.2153 28422.3716 33640.7685 33640.7685 11568.5446 42987.5335 48432.8504 11303.7992 15286.8842 21652.2358 11369.6024 17513.261 24631.0039 69033.108 51742.7252 18601.1664 27065.0881 63493.8089 14261.8365 79560.1016 9050.8756 53757.4734 270510620 urec Nitrogen Ammonification NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 187550.0532 178111.5504 36407.645 49720.5229 16507.1565 40590.2532 240632.3121 77720.2545 205015.0217 78603.0245 60327.653 1873211.8908 68936.2467 134615.0203 150626.4218 60603.6139 60603.6139 37753.3743 108985.1173 30483.8197 60920.1913 208613.6779 59085.2025 63512.3858 51151.7197 70313.454 66098.4065 100620.8766 126300.7836 171558.9339 37449.3686 66760.1448 49516.6807 99278.6342 125249.3453 325979789 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6849.7321 12357.3845 3369.117 3967.0724 5225.5667 4723.7075 4479.6968 61774.688 12692.0555 4187.7687 5210.8188 5210.8188 10785.7904 9460.2187 5310.7974 74959.4148 14413.9622 7212.2454 2848.6924 7325.3513 5352.3147 8278.4145 17264.6126 5691.0998 8946.9133 4553.5933 8138.3024 6094.4117 6528.3555 9320.9293 353194852 xylj Organic Remediation Aromatics BTEX and related aromatics Halobacterium sp. DL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 38916.7429 14617.326 24841.4087 43413.1523 20377.2466 5613.4879 12929.1646 18797.8811 10618.21 42929.1692 34814.117 23299.9148 1905861.031 32326.3026 49491.587 42227.5942 16321.2992 16321.2992 22546.2113 29856.2106 25754.0594 25478.497 33221.6 31646.5867 15220.5459 13374.2592 25819.2041 11895.2954 53479.3835 29662.9324 41545.6951 13421.4763 25914.3203 22216.6793 14087.3428 38317.4199 84383810 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 17475.9882 16942.1909 11747.1089 38063.9785 9469.3863 365996.2905 14461.5824 29356.0418 18400.0411 91933.9726 12078.1929 471359.8164 17441.3588 18370.8162 101098.5037 16544.94 16544.94 14437.7249 34977.2701 18713.6231 23444.2908 14598.57 50808.3667 10847.6495 12924.2164 41717.0998 39714.8396 40350.9221 16022.7604 27495.5245 16462.3021 14898.5491 13156.8981 14004.9461 392059.9916 291295379 terc Metal Homeostasis Tellurium Detoxification Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 19156.7778 12492.7461 17271.2029 25599.4477 20785.5765 5058.014 12597.6575 29415.0317 12445.3851 23239.1448 23967.9297 10867.1581 468831.5349 39841.6461 39906.2843 40600.3961 14440.9411 14440.9411 17918.7831 41738.2563 20609.273 44717.4094 33288.2054 31255.5458 11482.8507 15450.8454 24336.4489 13651.4082 48744.1905 22463.6794 27780.7846 22353.9225 23010.9438 19770.2887 10922.6351 34704.1935 238720458 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 201672.909 31248.453 765732.7599 43369.8683 594239.0428 176990.4263 108202.5594 13560.0743 40429.4426 27469.3097 41694.2297 779057.4426 46617.2345 46723.4265 55041.2027 41296.5395 41296.5395 17888.2582 64927.6654 27586.0396 45735.3862 39095.024 63714.6837 13634.5429 25535.647 58912.037 22600.8384 168045.4928 78439.9136 100779.551 26811.9107 23101.7539 22332.0947 16736.2136 66749.3454 332377142 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 16662.2662 139836.0672 5745.2555 124388.1863 92304.4748 13358.7229 13047.3871 11989.1725 19733.917 499007.7146 11763.8185 36487.301 13952.1088 7890.023 7890.023 9847.4742 54851.411 9952.766 21743.5331 20861.6847 12776.2348 14771.4787 10253.1154 8275.5418 24417.1612 190238.6677 5418.0211 24427.4055 16841.2491 22972.7673 13744.7364 10643.3992 10912.707 388062142 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 00703C2mash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 77629.575 23489.4334 25738.209 10626.0457 20944.5317 22082.0944 27113.0848 21125.5402 23903.0654 11731.5727 745143.8731 29655.4177 35903.4347 16599.5969 12439.1329 12439.1329 13184.2393 28929.9914 20448.3976 86827.9925 26410.675 22964.5533 11504.1153 17872.0187 27886.4137 11052.6032 55293.5674 15801.7596 29625.0547 10260.6051 16711.0717 17439.9686 12876.4911 35087.8629 126707067 tktA Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 123173.6384 29069.6497 7369.1155 12620.2941 6391.3118 17542.3016 14795.1663 12876.2134 9490.4095 400141.0876 12669.1593 15716.9093 10589.8439 6700.523 6700.523 8152.319 25574.4935 26364.6036 16165.2009 20579.6009 21174.6715 10238.2524 10860.0456 23924.6353 10449.0821 32851.3077 7983.824 40175.8276 5755.4758 17795.2331 13686.7232 4759.8958 15425.2298 75909823 urec Nitrogen Ammonification NA Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 4760.8575 18885.7262 3369.9379 35111.0608 72906.0855 7600.5507 4503.9854 5021.5808 6694.7737 2748.8081 5746.6196 2250.2271 10234.0201 6574.0118 4278.9316 6264.8586 145018473 pme_Cdeg Carbon Cycling Carbon degradation Pectin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 242554.3804 73156.9658 153852.0604 110597.6679 904153.0725 45613.8584 148728.4303 234521.5636 210550.6666 149642.9906 298468.3783 96380.7163 2689774.0774 317941.4345 108090.02 277980.6045 173030.2011 173030.2011 166736.4631 207788.9451 87969.3058 679401.078 223350.5351 326881.8701 110855.8267 127066.389 174247.7714 152559.5923 618849.7172 126595.168 206963.152 108622.0178 137467.9251 135235.4697 137644.2336 335007.1393 323528282 rubisco Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9698.6681 17072.3567 136241.9438 29396.2647 26382.2743 75283.736 227839.4048 3633.0733 10697.1636 24380.6378 8235.9138 264824.9332 18732.5422 26500.6613 26180.4917 14443.084 14443.084 6457.4007 18561.3829 14767.9135 6282.6787 9385.3664 11754.4817 3961.951 8793.6663 17511.6192 6308.2179 34158.318 14788.5066 22095.8468 22235.646 10150.9302 6848.3084 13416.0547 17744.0991 346993066 alkb Organic Remediation Other Hydrocarbons NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 27421.36 7235.5468 10211.7164 2863072.5541 8055.8387 3269.0775 2860.1636 9358.9278 3753.3054 4662.2215 10570.4498 5518.7436 146458.3291 11349.5194 2728.8869 2728.8869 16701.4494 11734.1316 32030.2035 6092.2794 3275.7309 9999.4611 8016.6737 30125.2877 9261.9171 13045.9293 6875.4503 5197.5175 7542.9772 5458.9333 3059.1406 13394.5288 269794708 cda Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 376794.6706 18341.6762 75344.6436 63112.8582 111120.9519 69043.2308 62415.9227 46477.9223 29920.4764 34561.2076 50228.7015 127687.7521 823859.4245 64130.1297 44509.0484 272449.2924 52087.427 52087.427 34361.5546 61109.337 39006.5721 463053.7855 76811.571 41270.305 28148.5939 40002.4263 52471.2446 49888.1285 99186.3861 64076.9885 88099.8391 27420.7926 38394.7814 53198.4134 33816.4222 64580.0094 351684111 mer Metal Homeostasis Mercury Detoxification Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 86293.4807 44503.1472 42023.8165 54029.6623 30687.6253 99834.1635 36973.5401 417218.8603 31110.3072 40556.5425 38922.9847 2185010.7758 79401.6602 127584.9912 48341.0346 58482.8981 58482.8981 43356.5293 79047.732 39288.4008 79054.9847 69351.0753 95882.6799 60214.7498 47774.8386 49067.2544 40374.7148 109476.8383 73156.32 62067.8691 28495.3866 40210.765 63628.4892 21680.3797 44075.3463 330959154 nitro Organic Remediation Others NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 37785.6867 7569.6874 965015.9612 7423.3507 21542.1767 27941.0437 162763.7627 6082.3832 16527.2104 15348.1558 11695.2717 234145.1243 23428.6043 18382.3085 12979.9162 12445.1926 12445.1926 6558.268 18001.7994 13935.9881 15157.2563 12121.2443 38422.0816 7358.2795 9073.9181 15548.7406 7370.6503 7073.3409 27156.98 22018.7256 9371.6141 12526.7837 12406.3803 13800.9188 21892.9855 99035681 dehh109 Organic Remediation Chlorinated solvents NA Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 17757.2741 15334.7593 12305.6365 15881.005 5755.7247 9260.6763 43559.3287 24318.263 19552.5664 17405.6863 11870.1803 274616.3815 13585.4929 25046.7666 13540.6452 15321.8974 15321.8974 14739.9794 29806.3961 15568.3116 16962.782 21017.1562 20266.2148 10002.6063 10947.1668 25733.61 10957.1219 46958.8322 20250.0737 24572.842 12985.8547 16988.7534 37552.8747 13544.4195 26629.4293 361054949 catechol_b Organic Remediation Aromatics Other aromatics Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 55815.64 20758.6747 23822.5688 9629.6653 63020.4796 20778.7088 121763.7126 44289.3098 30445.8006 31787.6004 16661.4574 568163.2075 39586.9275 38185.1496 41855.469 39879.3372 39879.3372 21714.4128 190700.2654 27464.5944 41324.6037 55966.8212 59793.0249 19734.1448 19611.3128 37368.2475 17394.2475 57082.409 47230.9128 41090.451 41388.7054 25229.9094 32073.066 22370.2897 45467.4821 388274878 ppx Phosphorus Polyphosphate degradation NA Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 13054.7571 78454.0512 7499.9757 28508.4753 42199.7163 6411.5628 17079.8743 54677.2327 10049.0075 8949.7527 286304.6804 18072.9397 19829.2581 16590.8757 14781.9648 14781.9648 7870.4612 22764.8408 14533.8713 23631.6404 26815.6013 28977.0213 6816.1561 7618.2008 17790.4012 15885.5776 32981.118 15144.0972 19882.6034 10359.2182 10253.6548 12307.8077 16002.2809 26690.8081 46116088 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 4640.5884 3667.1402 306517131 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6101.4969 6601.4317 5008.7251 3220.2473 4471.7511 5942.9319 5101.057 144142.1293 7240.4653 6974.0131 2235.7576 2235.7576 5868.3728 12890.3519 7745.0205 9581.8108 11088.5724 12421.0117 5597.4985 2944.0551 9981.8402 3472.7993 14443.9656 10692.5762 13882.5316 3045.1641 5250.2557 6095.0536 4930.1208 13462.2474 159039025 chitinase Carbon Cycling Carbon degradation Chitin Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 18600.0905 49429.2108 37340.3343 15555.1264 1940.4201 19294.8111 4791.2787 10782.2794 14761.8805 102354.0243 5558.5595 14545.0679 8928.7259 40194.0272 40194.0272 5352.0866 14892.023 13191.4857 8003.4804 5833.5892 4776.8321 21642.9334 6670.2317 13645.3813 6176.8775 29698.5455 11723.4358 12543.7733 4627.3965 31579.226 9692.9446 4942.2527 44843.3918 146342967 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 194701.4629 51322.541 34318.7973 42228.7667 34566.2641 36336.4599 20393.6622 42713.7734 25502.2614 47495.1504 54467.3668 575018.3463 32397.0334 42717.9829 66533.1232 115686.2122 115686.2122 467122.2529 61746.9485 35761.5419 33551.8115 53064.9051 45589.7998 43403.8135 70804.369 35810.147 39822.6283 122473.7186 57319.392 371302.7279 56625.3026 149971.6243 275765.9747 41287.3352 204043.6296 83972352 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 8233.2601 6441.0642 10248.8532 6273.8793 4054.2581 7238.3266 5941.711 6791.6717 3580.3956 206802.7609 8270.5968 8735.8847 5107.6854 3952.2735 3952.2735 5808.0606 13309.9057 8922.8657 6713.767 8784.9545 9964.6776 4137.6859 4026.9455 13784.8016 4358.3044 20416.8159 10047.3363 11167.498 6297.5835 5689.8586 5276.3679 6928.3293 13912.6523 374374277 RgaE Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 10388.7659 15750.4014 5488.3485 9689.6809 8330.7657 32699.2777 8310.8162 5037.5047 7643.9646 5584.3146 169377.8193 10933.2613 25738.5318 17618.4058 4772.1061 4772.1061 69737.616 13923.1972 11393.2741 57216.7091 13651.4509 17588.3998 14823.3697 7329.2973 12666.5647 5471.8847 20463.5029 18933.0913 10103.2999 10423.022 7266.6256 11132.2848 4305.2676 13835.7287 93450477 arsc Metal Homeostasis Arsenic Detoxification delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6440.941 16115.716 13734.067 11941.3806 6878.2437 2444.0525 4419.7439 1988.8456 9079.1409 8466.8153 10928.3219 93173.9786 4618.7794 53858.3702 14966.7303 4567.0459 4567.0459 3686.6719 11066.699 11847.1701 4345.2586 5322.5284 3192.4002 3838.1484 5434.8839 4011.819 11481.0585 80892.3721 8974.8158 2804.5721 6721.5464 11755.3846 3183.9715 5540.4196 268610614 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 495788.1386 18968.1669 137198.5439 83854.9772 61581.0007 85932.9927 80080.2115 115647.0928 277461.2115 623223.8472 155366.6594 387101.664 1735452.2748 161316.9931 222249.3328 155872.2806 241942.4573 241942.4573 198583.3663 230650.9298 122412.7375 430709.4416 1072837.7964 1235316.1625 287149.342 164455.3753 272863.3958 182348.8589 383545.3201 137415.4917 157057.0455 137683.9655 218438.7812 143688.8291 160982.8314 714280.1002 306516937 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8203.2807 5380.0478 17766.7701 19102.1732 4654.4499 14348.7153 7498.1688 6212.6395 20603.843 8003.3563 9719.8962 116239.0162 9022.2685 9061.6028 10356.003 16122.8935 16122.8935 5089.2426 10180.7612 6957.487 6884.123 5605.3156 29475.705 3385.4593 13755.7736 13242.331 6222.618 33429.1129 7203.9528 16120.7255 5681.07 5776.2264 4481.0523 4311.8276 8814.4732 147886170 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 137365.0632 17442.32 45341.8636 17415.2894 40460.0087 29637.1851 18886.2791 9954.336 4042.1894 24688.3387 21116.4347 21306.8042 300531.6952 14378.4981 16844.1053 11361.4829 9112.8366 9112.8366 11805.1051 21959.3608 16820.3259 13242.9414 26947.1986 25221.7677 7189.3187 29455.1233 21072.5374 8605.8659 32574.3075 20011.2139 30066.0339 12677.5212 8678.2746 12430.0515 8943.769 21039.5493 212171508 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 14149.8359 12079.271 5615.3778 6770.6369 5439.8461 6165.628 10876.3293 5828.5683 179357.8413 13336.739 11408.787 4345.9919 4568.7007 4568.7007 5066.2824 16774.2479 12156.0901 12536.4386 12159.5472 11120.9525 5467.8819 8616.2587 14226.5846 6753.5429 20005.9043 14208.7578 16746.0618 7245.9407 7989.21 7326.2871 5093.0264 19580.1848 375102593 pcag Organic Remediation Aromatics Other aromatics Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 18545.9222 9972.9784 27192.8966 19525.4103 13277.6651 22102.4587 9172.4195 10554.6755 3960.9978 9085.9274 7908.0801 341143.6801 10994.2335 9780.634 134422.8793 7103.2587 7103.2587 12530.313 17239.0533 6364.2361 9209.4559 14739.8234 12629.6872 10803.9974 5691.7896 13574.3154 8538.3171 19734.4913 12098.161 12858.1965 10159.7814 8824.5692 10067.5524 6058.5506 10978.8773 290756863 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 40026.5303 89353.2048 32515.8682 62683.3939 10918.3903 6168.8871 2861.6394 13347.1554 20285.1892 10359.0089 306984.269 8017.9409 29501.6238 24665.7983 36788.5853 36788.5853 8663.7673 134656.3971 7765.0389 9354.8958 12790.0936 9688.9269 6344.5837 8226.4624 13431.0553 7754.6248 20902.7878 23203.5156 21531.5203 31174.7751 10258.248 9641.2356 5666.0095 51896.2636 166087500 FBPase Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 38753.9831 20891.1254 26338.914 62336.7917 42125.6829 6487.5188 34614.4312 32343.8042 30445.2649 31681.3108 51920.7562 25081.8789 864707.8072 35498.6921 43546.4014 66057.5436 82491.6653 82491.6653 23635.3724 40021.7316 32133.6207 78777.5532 114058.2269 49768.552 19234.0417 19252.7927 37245.469 18831.303 66989.7217 33707.4239 48750.4587 15671.7469 23142.9329 26872.2706 23354.0833 47477.9446 319418531 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 9191.1729 8713.8114 8728.8001 25923.9702 9822.4202 5722.0873 4822.8622 9923.0187 11034.3812 7347.3741 320116.8671 19154.9085 22745.1358 26928.7279 5175.3968 5175.3968 9799.6029 20242.3893 13001.4725 632453.6575 14506.9711 16991.3987 7945.7502 6929.3637 14654.5352 6751.4702 21308.6568 11888.5718 17526.7159 13292.1232 8992.0439 10240.7933 8019.4631 19555.7368 157679103 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 107516.2858 17329.6392 38019.5069 116011.4985 57485.6174 8616.3352 46936.5597 11133.0631 99412.5403 32159.1482 207380.0365 580953.8058 60297.2031 53374.7141 54130.8697 76552.7227 76552.7227 36513.093 53078.9467 80050.5319 23925.5427 119885.9039 660177.7148 13402.3665 31997.4475 71496.3662 31781.7388 645271.6655 38111.0194 129151.125 24583.4107 33412.481 55789.2297 39139.5099 24563.1379 271964227 urec Nitrogen Ammonification NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 21399.5725 8336.5302 13732.2532 10213.0582 4138.6886 30304.6669 7361.1226 9617.6706 15739.6171 8856.5237 166563.0528 10904.1018 11384.9263 7382.4614 6153.8214 6153.8214 6868.6663 21347.2573 11296.6748 8083.1882 14834.6214 9561.4054 4321.9346 7964.4195 13558.9006 8477.1987 22485.4586 11386.5589 13477.5496 7793.4389 6937.8116 11452.3917 4355.0368 17374.5833 299535093 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 12426.0333 11112.1461 11834.2271 14999.529 6847.3525 9503.5805 7778.3053 9628.9693 13378.2409 6238.9492 326735.5397 14053.5385 11763.7694 8667.123 7344.2552 7344.2552 9369.1017 12228.5491 10533.7367 51736.2285 16984.8899 20193.1626 5494.1629 6466.6141 18132.8023 8296.3567 19306.7691 16121.4459 19542.1859 7245.3731 5090.577 9770.7163 5454.4069 18654.6405 159490610 actin_Viridiplantae Other Phylogenetic NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 11652.7528 11388.1444 4828.9514 15082.3451 8357.9628 18960.5196 12716.4444 5825.5754 9291.9147 4700.0224 5619.3819 7727.2121 6138.0221 6138.0221 3584.2982 12384.6799 13014.2863 8756.496 10387.062 10206.5017 4268.6473 9249.1698 11288.5865 8025.4183 11261.9393 10396.1021 225054.1183 7476.6903 10984.6749 10303.8024 5061.2475 10073.7411 294340863 TIM Carbon Cycling Carbon fixation Calvin cycle Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 13748.0283 4329.632 4291.6649 81637.7233 4103.9873 6243.8186 6492.4444 3829.7359 7897.1245 7478.5396 13051.8675 32722.4525 8572.7667 2854.9866 5485.3983 4046.5484 2894.4651 260087302 amyA Carbon Cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 39532.2887 299299.8049 29639.0137 10817.2904 13945.5387 24088.1303 22599.5529 15457.4742 16249.8953 24746.0374 338203.4825 19160.9258 38289.1692 17871.6881 45357.5523 45357.5523 17803.872 29044.7874 24143.8664 29259.5602 50834.5416 76335.4918 46046.3517 18147.6794 32439.9181 21133.981 50578.2099 27975.9841 34558.0921 95496.5874 15735.9063 19391.8199 11172.7609 52060.7276 84387685 alginase Carbon Cycling Carbon degradation Alginate Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 16283.5285 10119.1515 21199.0357 16567.8115 11490.7058 12349.541 8139.9027 14454.0386 15300.0663 29112.0165 381802.3141 14755.6007 15647.2942 13759.0285 7233.7449 7233.7449 12064.7086 21490.3494 17480.3184 17922.1777 26959.0708 18068.6615 9351.056 8572.7393 22123.4875 7444.7416 35007.1356 14538.1839 21586.2432 10399.1513 12576.2983 12899.0082 8653.1923 25505.7779 357976334 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 70180.445 24953.4876 54126.2958 44200.8075 111673.1019 37803.7576 52663.6862 42649.5801 27565.3436 282515.426 51087.0622 105716.7754 1191798.2179 99470.7318 81862.1733 74615.5207 60540.0251 60540.0251 41232.2157 54965.1009 44965.4038 96189.2978 44432.8177 42816 23417.7461 26830.6759 61542.9496 28578.0819 96141.0606 58507.0489 67311.3939 29201.004 38643.562 27801.8902 33865.6166 63247.3037 381384727 arsc Metal Homeostasis Arsenic Detoxification Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 36995.6181 12594.9282 15338.1627 170681.76 21047.1558 17969.0526 45214.5347 66881.3745 18450.1682 25143.6712 24498.3892 16630.9993 438398.4694 24300.4731 25213.8995 21618.9614 12808.4014 12808.4014 42309.8081 35162.1893 23657.921 56425.1327 24127.4464 30371.6767 14044.1089 13327.836 22344.8287 21333.3534 53033.9166 21060.6966 27931.3311 70921.4855 27049.2035 16879.0102 26623.5873 68942.2344 114324589 chitinase Carbon Cycling Carbon degradation Chitin Lysobacter enzymogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 24531.4284 30033.4552 42752.1518 23237.9873 7670.5213 299149.9887 20497.0612 9097.6518 40151.7326 53469.8333 86088.2513 399756.9616 30293.1309 56452.8479 18578.2734 34557.288 34557.288 35233.5437 94413.9012 28377.5339 59461.5637 151342.4596 23921.6595 32951.4053 87628.458 39464.6028 64479.7375 117095.5271 34273.7328 61099.9999 51570.3192 35404.4872 52747.7461 18872.381 38457.9277 189353245 chnb Organic Remediation Other Hydrocarbons NA Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 12267.9383 7027.5726 2156.4266 5794.985 3406.5917 4370.3866 3483.6657 64746.5156 3412.1183 28653.6256 28653.6256 12579.9284 3472.0923 3085.4469 2245.3324 6518.4279 3780.1848 20297.87 9980.6115 5651.7504 4682.5593 2856.7299 116194428 protease_serine_fungi Carbon Cycling Carbon degradation protein Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 46519.465 33225.1272 123231.1665 10244.8393 10829.0707 46176.3673 79526.4949 20239.5572 91187.1671 68065.4657 592407.9042 73899.7608 51623.1305 20623.4461 81328.385 81328.385 51218.1076 263461.5327 113877.2636 130028.7408 55578.4288 757335.0118 101226.546 48163.2433 38249.3555 55273.5774 172274.3719 69013.7515 44267.8073 24370.6252 114506.0038 68278.8284 143649.4721 420987.1969 156446985 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28100.0781 11260.1431 8011.4852 15623.7967 14576.8141 9722.9287 10896.4143 6030.3377 8862.9934 13350.2501 21483.0575 274758.926 10392.5695 9162.4473 7127.701 5315.5276 5315.5276 10251.8473 24383.3156 20595.9258 10933.6236 14005.8047 15860.0835 7194.1578 7108.9884 21051.2305 8216.0804 34546.5571 13595.5188 17907.9145 7666.3264 8954.7433 9821.0351 6826.9004 20779.7733 206684870 ppx Phosphorus Polyphosphate degradation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 310399.3238 112340.5537 40440.7676 50667.0882 51042.4966 7293.772 31887.4533 12403.399 57050.7138 39469.5328 47807.3668 1254740.4598 50224.6987 78650.2498 60554.7665 118535.784 118535.784 24282.0124 50315.2289 25199.6239 14619.3383 45852.7663 31499.2502 19814.9431 72630.6828 49291.08 17589.4066 48789.8856 52038.9154 69564.1231 27834.7905 30632.385 46790.4543 15825.8191 21077.3278 226316995 ppx Phosphorus Polyphosphate degradation NA Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 49634.7206 9781.0112 7183.096 7515.4965 2426.3485 8022.9002 3332.9597 8444.013 10788.9831 28651.1029 65086.095 11690.7959 104046.1016 6742.7778 103273.5278 103273.5278 82065.1062 23318.2474 8366.0353 17137.2818 10300.1721 5202.7258 6943.1229 11846.8023 14543.5948 5736.6661 19179.8008 24162.4363 37386.583 5488.9037 8843.7688 14766.816 3877.0344 6308.1822 83025982 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 7927.7251 9986.3575 10704.1815 6453.3654 3190.4042 12808.0758 7572.582 10139.8111 154059.2379 5900.982 8261.9536 14223.2228 6491.22 6491.22 4807.5726 11049.7975 5626.747 6290.7419 6020.6733 7519.5116 4556.1488 12824.1712 11216.3262 2798.9019 12454.8207 14476.0827 23124.2329 4533.4696 10726.9114 4557.0676 3664.2883 5706.9272 296115777 FBPase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 10563.3876 6313.4835 25670.9179 19636.2587 18068.6317 11681.5727 26313.3168 3477.17 16639.433 12429.1254 11204.9642 336142.5804 19357.426 12091.7293 24035.2927 21418.2007 21418.2007 9943.0619 28366.9983 10381.1283 9811.7374 19405.7785 11504.8706 6412.3273 18659.4036 14784.5306 26876.316 30622.9488 13124.8823 15768.9346 18285.1037 45214.6808 9566.6735 5025.9928 324060.2534 151592184 urec Nitrogen Ammonification NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 57680.023 39389.24 16013.9709 51323.257 32379.7619 87137.44 69268.2661 73668.3266 42348.8235 74031.9743 57545.4511 1648431.7779 189284.8128 45097.1311 101505.9807 65993.5441 65993.5441 119700.3379 112874.9544 33845.0403 95886.7097 169968.4021 235073.6282 33504.304 75991.6757 131570.7472 47818.438 242565.6586 74644.5392 84354.1586 29912.6932 77296.289 86556.5948 59743.1827 142635.9356 36785548 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 8181.1447 6628.09 4941.6545 4761.8655 3627.7363 8352.2796 9709.8143 3640.4484 186141.4506 9296.4136 6788.6907 5706.7402 2158.672 2158.672 5622.0495 11792.8848 9437.4017 12445.4471 13639.2867 8072.9574 3291.4441 4773.3083 12510.7182 4591.3722 15181.074 10157.2856 10495.0034 3223.6367 5928.5763 5988.2221 3439.3769 10480.6765 373553924 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 75935.3543 89690.9083 49056.7961 39177.2238 13321.0232 14134.8821 54731.4856 57148.4187 18087.7342 710934.9386 7508.5514 12038.2745 11347.1551 18158.1987 18158.1987 10351.4794 19364.5049 10463.2029 16110.8216 17354.9943 22615.2777 15829.3823 8646.099 15578.6833 20997.4137 32220.1942 20873.3149 17583.9723 5814.5506 8622.727 13484.2044 10925.4277 36495.9881 324319247 pme Carbon Cycling Carbon degradation Pectin Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 32235.964 19862.6344 20325.0823 8880.3032 23573.7996 6808.5779 37033.1086 21667.2159 15369.8337 24894.3028 28067.4566 26377.9525 352527.4979 80344.847 19980.2796 32853.797 22183.2141 22183.2141 10323.1604 28492.8657 19395.8569 24142.6795 26027.2733 20601.4707 15433.7666 15526.3184 22338.4413 27275.0703 60410.5977 21129.8441 28688.24 12588.4524 14582.4262 41361.4485 22948.2797 39478.7149 116201269 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5403.7663 63645.4148 2871.9881 7193.68 3693.563 5415.6943 2683.4863 4011.5613 4146.4622 4978.9136 2561.412 2561.412 18105.6787 7661.6112 5450.888 5044.6134 9758.1579 11543.9574 6226.8053 11989.4397 24621.6528 4868.5286 7372.3033 2082.3932 3948.5864 4163.3772 2138.2794 33573212 gdh Nitrogen Ammonification NA Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 21542.5028 24353.8907 9282.5847 33223.8128 9948.8961 3125.0537 4712.006 6921.3046 9489.2082 3413.2435 99691.0545 6093.1577 11518.6408 6275.8719 4607.2412 4607.2412 4545.3766 7539.6634 6039.0807 126019.5293 4100.571 6822.2806 3444.11 3354.8857 11204.223 3886.6255 12032.9987 14286.1446 11959.1808 3876.7461 4741.8462 9772.8105 5505.5373 4381.7769 312137935 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 11651.0952 31474.2613 7776.3047 12756.0726 10369.5207 5752.3146 9999.9234 5456.1906 8405.8827 15131.3844 10152.151 263162.0818 14954.0802 10847.5722 7660.7202 4677.5033 4677.5033 9614.7768 18688.0249 12765.2886 13065.6921 17496.1974 19890.4902 8853.8912 5408.7492 16472.0622 7984.3928 28211.3884 16614.5171 14609.7127 6095.0441 9881.1827 8998.9354 7156.2125 19042.5585 328843411 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 165462.7122 22021.4291 9991.2189 24635.4785 9073.2203 35218.8269 28803.736 41257.8149 27462.3701 35888.0027 54631.031 1929097.2033 26799.5776 69776.825 48547.9816 49001.7637 49001.7637 79451.554 252026.2648 24279.3656 25613.407 124161.4728 19358.7142 35130.6892 35301.805 77844.388 45927.2532 170134.1289 36711.5237 31256.7479 51595.8317 42671.5956 41583.4643 21424.2615 34064.1891 74056902 nosz Nitrogen Denitrification NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 11050.4427 12132.3319 1122633.1616 14657.4369 30729.9457 16630.2911 9038.9933 8405.6974 7294.0569 7957.6097 8988.193 7968.427 250317.7325 14295.3653 11813.9865 14928.2877 6753.0516 6753.0516 14722.4793 10621.379 11267.1121 9402.0498 9381.053 11867.2649 7792.3993 7077.2072 20100.6819 10389.1074 19680.2993 15659.0695 17390.4685 8557.0567 8346.3878 11180.475 5146.2753 16623.1185 295432015 RgaE Carbon Cycling Carbon degradation Pectin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 5190.3402 2503.8063 53866.4169 4879.902 106828.1036 3854.9255 5053.9599 4487.4622 12551.0782 7675.1568 14891.8388 9857.8133 3234.49 3588.0075 8306.5559 3535.8781 295343.0414 7010.5369 10759.3111 3107.6121 3946.277 7941.1289 4777.1649 8718.0861 239809556 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis gallica superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 8734.9701 7789.1909 7696.9263 9728.7393 6254.6078 7926.336 15430.8829 12985.6304 14659.498 162102.7266 8428.0765 6878.0386 6583.7639 27706.6519 27706.6519 17833.0899 8964.2884 4595.793 12764.8868 52199.5711 6662.3828 3456.878 4582.4946 13176.9329 4844.3469 46481.8338 7060.0881 9345.0305 5411.8637 4802.7904 10860.3627 5209.067 8686.9042 227822248 PRI Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 6565.5159 4686.0362 9191.8591 8806.4764 9997.8335 4803.3284 2907.7872 6121.2292 4889.6873 120147.4265 19717.9194 6827.6121 6892.9792 4505.9071 4505.9071 3930.768 11405.9213 8555.8016 5988.5825 11179.4569 4135.7967 5201.2255 15578.2867 19950.4277 3202.0543 18475.4466 7394.8001 9061.9217 31924.8138 11633.6882 4841.7535 5327.0172 4338.5424 218667357 atzd Organic Remediation Herbicides related compound NA Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 5649.1388 11504.9782 12844.2648 57109.0124 4299.2293 2434.956 12198.5465 6701.7213 3455.758 301316.9178 6048.0376 7583.7865 4299.7004 5291.4182 5291.4182 5033.9485 14402.6108 5377.3803 5917.6416 8090.8408 8676.4807 4049.2072 2461.3744 6705.4908 2828.9177 11498.7878 9949.3696 11535.8343 2902.8843 12328.7301 2652.4832 5673.5728 126706959 alkb Organic Remediation Other Hydrocarbons NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 5333.5535 8377.3183 24421.2673 35325.677 2849.2873 9770.3417 5533.9286 10106.9867 24791.3818 281267.8497 12313.7361 18387.2076 35197.5781 14788.3271 14788.3271 17249.7859 15545.3441 19226.5162 22036.691 4420.3153 13187.6681 26954.0212 5308.2731 47144.0727 14406.3362 18983.9615 4980.9566 7422.208 11010.1248 3309.5328 312112995 ppx Phosphorus Polyphosphate degradation NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 21343.0313 16415.1735 54016.1234 55817.5244 9861.8294 12285.3216 18014.4076 6004.4637 48517.6048 20681.8281 12811.2016 295716.5525 29743.4912 25528.7107 20500.294 27689.4939 27689.4939 12268.0029 39734.0215 15997.8814 101125.7832 84598.8384 24256.3005 13371.5925 12317.6757 26910.5523 11932.3181 33332.2006 11393.4925 58026.8358 11508.1228 40745.0292 20506.2655 13208.0975 22157.6546 311278267 cysJ Sulfur Reduction NA Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 9410.4719 41525.062 34902.4743 12143.3602 5221.9676 8401.6425 4935.1026 4253.428 19363.6888 4955.9998 9773.6374 95215.3711 5596.2312 7613.9244 10502.6485 13328.4194 13328.4194 12952.8415 15300.6549 5683.3434 12563.2315 20565.2089 38108.3182 27264.0139 10075.0647 10879.0921 8032.874 19081.1735 12009.9689 10689.3857 5241.8074 80048.8422 4013.0046 5533.013 37678.8224 227069649 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 438013.2038 66741.1914 10546.239 36620.1923 12354.5627 25815.2382 14938.1928 17551.8846 64491.3977 45919.2967 426493.4592 461753.4033 20672.2061 48167.3379 13984.8887 13984.8887 42852.8157 36541.3677 19706.1842 24194.1872 82948.5314 30753.6377 16515.6016 12815.3047 24951.6466 24420.7505 44583.9143 16184.2771 31345.5776 14233.0653 22864.0192 85058.5082 13368.3527 25140.1073 238763050 tehb Metal Homeostasis Tellurium Detoxification Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 4844.2592 4797.4542 4158.8646 29132.6189 8151.6538 54096.4743 2332.4592 12542.1791 3353.4781 4102.9069 2893.4655 220907034 ccmN Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 12640.0717 202986.1202 12996.3544 6522.8089 10063.1692 7907.1962 9658.797 11064.6282 9181.1115 32923.092 11695.5958 307176.2024 16123.0824 29623.312 10461.1693 10264.4679 10264.4679 11543.5757 19955.2089 16913.0503 16304.7914 19124.1319 40745.6425 8075.3287 11053.5531 18445.2356 10279.7375 20199.581 10351.0563 25430.4164 11417.6786 9334.0849 12981.5991 6894.9756 18261.5117 329962236 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 4380.2218 10511.1041 1987.1127 2652.5627 3000.037 3576.603 5839.8082 112724.1301 15287.7435 7190.9215 3731.3738 3731.3738 4385.3752 9223.2041 8747.1566 19672.7377 5450.7496 2816.3779 4630.7844 11324.1998 2765.8609 12597.6431 10463.7705 46354.5603 3008.844 4666.981 7998.8747 4593.1738 23015524 hbh Organic Remediation Aromatics BTEX and related aromatics Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 349557.30035 66928.4389 19590.5356 21267.04435 10991.90005 28929.42925 7980.7307 2987.5338 9452.16305 54622.9914 23679.36185 360318.88625 11723.8226 56874.63815 46737.1275 18965.65545 18965.65545 6709.67315 24336.91435 33988.91755 8200.131 14570.8282 244053.6995 61679.0698 15229.59855 16288.74815 10129.2862 36144.8584 14590.24405 17108.7068 4720.3518 14354.5175 14845.1576 7902.65865 60959.66145 327373315 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 20096.7724 9726.8704 2245.9694 3456.3657 3808.9399 5383.1275 4514.0536 103730.5016 6692.4649 5567.1368 6354.1448 6354.1448 4883.5493 6898.6228 9528.9714 6110.7035 6238.2646 3840.2554 2540.1146 2804.3464 10282.6718 5729.0462 12950.144 4667.9737 7365.6883 3461.4424 3494.0807 4442.8085 3784.5755 145299761 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 4387.0361 1943.3055 3052.7635 2904.2505 2712.5579 6664.089 2722.4908 4402.2564 1944.4757 2868.2874 8823.2269 383782417 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 47481.4715 6665.4575 17202.2327 12262.8987 5882.4991 113620.5712 148578.8153 123035.2533 19249.8805 36433.8881 18519.9971 298606.7901 25773.5136 34385.459 30830.3983 15420.8544 15420.8544 13691.4649 35573.6938 15301.2677 15856.8256 27562.3508 25316.7216 12131.455 9550.9179 27578.9636 13796.9878 49455.461 20648.5396 20071.8528 24617.6611 29359.8841 25348.945 11532.6638 59453.8746 240861989 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 14811.5036 6763.241 8070.5166 11404.8746 3093.2442 5113.5066 2774.7278 7852.3635 8529.0513 7080.3886 79134.4442 9426.716 8648.498 5292.9909 2586.0004 2586.0004 6082.0487 12389.9509 9415.1379 11423.1389 8186.0838 12049.0106 22185.8997 4818.3293 9371.5101 4691.2106 19143.6835 4660.7996 8882.8801 3643.7849 5785.1764 9085.8787 6250.7713 12456.2557 127512817 amyA Carbon Cycling Carbon degradation Starch Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 12650.2186 5992.1302 9690.1931 65510.3847 26704.3362 12116.6188 13829.8655 11640.6347 20282.9746 26806.9156 17110.4111 282525.459 17307.3884 33499.1572 21211.6152 25530.1437 25530.1437 11084.0336 26483.7367 16097.999 10181.3067 60451.1554 15379.9983 5527.8375 23462.7501 28438.7487 47043.3549 38006.9954 29669.3946 25981.0823 9998.409 12787.8127 8234.7693 6359.0476 26132.8084 270507999 pula Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 14745.4143 6642.4116 14535.8179 7715.5495 23228.1702 15752.4192 7721.9008 7218.4042 4900.8081 116086.7831 10079.306 10226.334 5393.3057 4842.0982 4842.0982 5458.8755 24039.0005 7410.5613 8301.1889 31665.9885 15701.5016 4484.8492 5528.809 12234.3409 10707.7132 26679.6956 12086.0768 13233.1904 3271.8077 8258.307 16455.6756 5235.8228 7680.0829 318040833 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5992.1648 20022.9677 13161.8268 2803.2262 114114.4588 4321.4961 4235.5812 3014.0874 3014.0874 6523.5806 5536.3534 4523.4139 4275.2212 3465.1354 6249.8783 84650.2162 3315.1524 3074.4529 4314.1254 27610.9672 145306255 cmci Organic Remediation Aromatics Other aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 50564.0691 34932.9515 33909.9778 31419.2468 6040.9669 12425.9379 22872.1632 39514.5655 24059.974 46183.8376 37328.8805 522003.6501 40850.5199 32381.7792 35456.9746 71487.4985 71487.4985 16540.5601 40729.8817 48550.7634 61790.1994 44346.202 42783.7255 26744.5075 18279.2962 167269.4706 24702.3237 89945.3471 69481.9507 27130.2519 17701.8092 30402.8248 61330.7059 65755.472 38437.695 345878974 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 75423.0909 51991.0357 5536.0898 14264.0956 11498.1299 6229.6106 17734.9408 23749.4358 11050.7317 132058.0818 37857.4798 594713.1265 55387.0037 49187.9537 45140.5077 56385.7828 56385.7828 49465.5133 42431.1526 14067.9079 24270.4939 85223.3564 11427.8847 40469.171 28633.3632 45609.5039 96062.0346 62514.6865 50175.6385 32048.4558 12269.7261 49908.4988 48766.9867 49908.1373 68416.2007 119673096 dsrB Sulfur sulfite reduction NA Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 9465.4239 19113.1437 16766.8325 11021.4345 16893.2796 24537.7947 7632.4316 8063.4129 12618.1003 26081.0568 163658.6082 9776.6495 9512.4424 25355.0237 8810.9843 8810.9843 3898.5801 18327.3815 25368.3244 17355.1923 12105.3124 13740.6126 10851.3387 5801.0594 17798.5913 9320.7766 28054.3387 18822.9388 13018.8038 6382.0632 9730.7351 9253.0398 5511.3274 18544.0242 68568085 mer Metal Homeostasis Mercury Detoxification Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 5498.6503 11025.4827 2105.2581 4874.1797 2510.1996 89406.0806 5466.1041 4075.5624 2107.161 2107.161 3483.7846 8424.9435 5973.8716 5953.9933 7824.9267 8152.0006 2709.9426 3641.2359 9504.1179 2755.3465 12954.2083 7314.7199 2754.4426 4068.5442 4079.0987 2908.0384 8759.447 39648361 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 22598.5725 12560.3557 28522.0459 8613.1445 3286.6499 4621.8441 11457.016 15345.3152 159404.0663 16569.5101 11395.4795 9493.8383 14145.9274 14145.9274 8679.8531 19249.8882 12761.9697 9148.1131 23866.2839 9086.051 5199.7459 4566.3148 14401.9963 11019.3931 41367.4955 21495.3001 13907.087 6910.9937 11185.1339 9025.956 8656.339 7331.3256 283781054 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 7544.6679 7076.5572 7758.2175 7660.1263 4813.2778 5717.1419 7661.3602 18894.757 86657.5752 13177.0872 14445.3292 49028.4044 9807.1676 9807.1676 16366.6875 10271.9096 7116.7134 7682.5806 99419.3835 10774.1396 8357.0839 12032.3464 15776.7328 6672.8389 30217.0604 23859.6156 15889.0834 4703.957 10138.5603 29730.4134 6938.8532 24981.7839 270298358 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 8664.9893 2266.9847 2349.4952 3813.0094 112907.4744 10502.8386 7506.6837 4295.7133 5147.2067 2526.4036 4446.7628 5808.6879 3388.6691 5018.9282 8422.1231 2660.5943 3340.478 2510.177 5895.4265 398056849 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4998.2193 2161.2992 3238.6087 6684.36615 3613.2643 3841.004 2775.3676 7063.9363 5289.8989 5203.4353 36196.2318 2405.5556 7668.7977 2512.6022 5160.64 7157.3691 2291.7574 3779.8323 3698.6317 2592.70775 6489.0194 227496021 mer Metal Homeostasis Mercury Detoxification Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 5520.5713 5821.495 9390.2231 4364.0272 5395.0543 3668.7091 4512.5861 12336.0143 2625.7925 72917.8255 3924.3916 6665.811 10831.4443 6119.1575 6119.1575 4949.0778 8757.9088 7154.4123 4206.8312 5514.9136 10191.4055 3469.137 3276.6895 17953.6439 3479.4874 14787.7227 8136.2559 7496.5849 4868.0691 4672.3112 3692.5895 4082.6391 10135.3911 326412358 FBPase Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 96070.6123 10755.3153 43380.8106 44933.6597 9397.0819 16471.6966 18747.9315 17784.2808 104588.489 26530.2483 46186.9891 535215.47 29902.5462 20454.9809 66088.8398 28839.5987 28839.5987 27257.6418 40578.0951 34293.7688 25829.1442 47871.9493 67334.3527 15097.8334 15524.061 29844.4403 20892.5787 44794.0219 33239.7916 48104.384 14584.5613 26771.1453 21580.3779 30289.4005 34632.6122 332304637 Sir Sulfur sulfite reduction NA Glaciecola agarilytica 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 19238.9295 8464.4723 6181.9864 13568.866 11071.8063 32980.9404 10532.3369 5934.7976 14438.682 15141.7276 7079.3505 254925.1439 18246.1396 29732.2546 13313.0584 8246.2575 8246.2575 8221.3507 21002.1928 12195.6562 14617.0283 18872.5669 13569.366 7602.799 8667.268 17450.1622 8819.1092 19387.379 6561.5988 16202.6066 6634.2917 8354.0947 8042.711 7013.6192 18229.1255 119961669 nirb Nitrogen Assimilatory N reduction NA Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 31854.1743 11758.7106 4749.1551 206384.118 2363.8906 3045.9956 5230.9018 3504.0945 246781.218 4292.8575 4202.5295 2801.2327 2801.2327 2989.6947 7365.4573 5961.8837 3643.9669 4896.4535 9854.692 2425.2647 3167.8545 7049.8166 3026.3558 12735.093 6187.4912 8912.9704 3000.8172 5198.6256 3545.7312 3190.0311 6035.8998 51246881 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 8286.9759 7754.7963 7970.9805 3226.4883 3041.9482 5776.7537 5782.1984 6730.1578 7312.0826 75183.7211 12538.4155 9493.9507 10583.2788 22772.3349 22772.3349 4601.5239 18968.4296 3604.5612 9206.0826 5904.5821 5958.8568 3562.5177 8179.5215 15922.0827 28368.8053 31564.7839 5223.3535 31281.0513 3654.6221 15846.6869 10970.5146 18485.1851 6864.7982 340841421 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 76261.9417 20802.6445 41705.7242 37489.2893 78342.6318 21134.0501 23817.1946 39559.6797 29500.543 28881.2379 34115.4776 32030.4606 833924.7155 67569.4858 58441.9296 76392.6457 36081.1435 36081.1435 30129.4527 58468.9764 36485.3517 54193.0053 44805.6452 47794.1817 19084.0542 41424.4013 43647.0942 27598.3394 73222.0875 49615.5059 46412.9409 18159.9697 28394.1832 35974.2884 36338.3789 43128.4835 88702041 urec Nitrogen Ammonification NA Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 17048.4055 13144.0427 14080.9059 32951.8342 8695.7032 9624.8476 46464.7374 10826.9407 12809.706 26624.7598 15398.7388 632177.456 18508.1615 6721.9304 32949.8398 20872.2486 20872.2486 16865.7517 37834.8248 17388.0201 26490.7301 36691.733 24348.2254 10025.7706 18247.337 20299.2863 8670.6295 55790.8427 25050.6835 24264.987 30417.559 14314.6838 20350.6904 11116.0385 33463.1096 349686598 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 13321.6571 6138.6069 9824.752 23281.0039 4928.093 17484.4562 4221.5147 9833.533 8656.5926 9644.9475 221753.0734 19073.7453 9982.3695 36318.169 14355.3246 14355.3246 7293.8029 19276.8094 9678.1985 47678.1532 18258.8084 17524.6084 8579.95 5174.7872 14347.5894 10835.1009 18254.9454 11903.9874 26338.0332 47168.3048 14751.5709 14540.5626 7520.9899 9773.7625 381157962 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 15113.3562 11221.1678 12241.4636 2952.4705 4109.17 4516.1365 7019.0597 4798.0152 15500.967 10348.1661 87313.9896 7237.7956 6184.123 3140.2184 6839.9193 11331.536 6964.6325 9298.8113 2986.8393 5483.7819 5391.6015 3903.2274 196479344 xylanase Carbon Cycling Carbon degradation Hemicellulose Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 176498.2892 11029.4211 58144.2289 14357.2177 26930.7783 15522.8605 249418.4732 383363.424 17950.2452 41636.521 36618.5528 43080.1799 690256.9788 173275.8452 72039.9844 54439.8825 298953.1361 298953.1361 25265.5785 81663.0116 41096.2054 27241.4495 242048.3328 32969.9235 42924.6143 52090.0155 56058.2362 70913.2556 165611.6095 61013.3414 70007.2447 18530.6911 30273.1237 66365.539 73136.3652 59348.8294 254391487 amyA Carbon Cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 21290.8048 14745.1011 52122.8659 13858.1172 257400.6829 5710.1307 5881.6323 31822.0293 40314.2993 73594.9843 39079.687 27174.4727 302868.944 105388.471 44265.0082 45045.9876 22120.2942 22120.2942 17737.0159 56757.5817 10436.2231 112231.5515 26246.6794 37648.4752 19737.393 31263.2379 15075.5267 39012.4379 151533.6884 11929.1149 23604.1478 7656.7225 62133.1162 15450.9932 15174.5288 17928.0103 153963026 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 25409.3016 15789.5316 5876.2116 14049.6916 6044.2 200011.883 10760.7548 14230.0543 19754.97 44767.9626 25313.7827 452645.0327 45692.8096 15977.1993 63566.3683 47347.6252 47347.6252 63314.2633 45572.9134 22210.2781 101957.0124 62043.4781 16491.599 17262.4403 28741.6584 32955.4014 23415.7355 82090.7849 14085.8399 27281.1562 12202.008 29185.4072 34817.5425 17997.8512 109962.5172 73539512 bphd Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 29596.4085 13358.586 20006.8685 15152.1509 48940.534 5699.8912 18835.3659 12659.4351 19029.1515 22589.3266 27528.9016 16538.9598 326991.1191 27111.3934 22642.562 16800.7017 36606.7114 36606.7114 16642.6319 38143.0194 24650.6083 29055.8681 30169.9436 37456.3206 16352.5384 30567.5989 31184.5104 11633.5125 67874.3187 14763.0972 25608.9635 12255.6575 22322.0723 23478.126 13509.399 36518.9139 68239761 dsrB Sulfur sulfite reduction NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 6348.6492 71396.8027 4760.5414 9547.4641 10043.9425 119695.8663 7333.0522 5639.2066 10231.6937 4729.6193 4729.6193 5284.8387 12579.2917 63472.1336 5132.9291 2806.5793 9217.3184 3076.2116 23109.418 26038.9859 10461.0953 4224.0961 4572.1701 6361.7816 10430.3032 119526155 mer Metal Homeostasis Mercury Detoxification Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 79256.6662 382871.6565 32622.3187 3701.3937 2223.5071 11462.2644 5730.7675 11238.7786 90023.6685 6437.5297 31409.8747 4790.974 3277.6173 3277.6173 8587.5557 15366.8023 7108.4401 10355.1819 8648.1047 9749.7253 23873.7617 10164.1044 18200.9704 4974.2267 20873.7314 6139.0754 18874.1197 3456.6767 14468.2669 16587.8963 8863.1032 106147.2468 146272632 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 13829.349 7771.5862 17332.4845 8768.0463 8566.5089 7106.4478 5313.1812 15919.6863 10025.0159 4990.5938 247236.0288 16351.2936 11035.9286 9586.5488 5198.7722 5198.7722 9119.0343 19808.958 13150.0961 15413.7555 14907.1205 13744.9813 7155.5768 7486.4251 18073.4333 5827.2515 30069.2084 12090.8752 18371.2655 4279.0764 8630.3094 10697.8409 9252.2049 18391.6919 150397520 amyA Carbon Cycling Carbon degradation Starch Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8409.2159 5507.4448 12734.368 4609.1751 3998.148 5791.3593 2822.4458 7343.4548 10349.2029 3881.3499 208614.0127 8673.2135 7794.2313 4967.6602 7842.9943 7842.9943 5964.0872 24137.6254 9942.7026 7689.7591 20340.933 12783.0486 4437.1634 5032.8015 16006.6978 4299.9716 25203.5876 5016.1015 14126.0794 7486.0674 9950.1864 8802.5835 6589.7153 10318.6254 110679207 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 13889.3588 8496.7987 29959.6023 11501.5664 4529.3057 8148.6863 8390.8695 8102.3986 11838.1317 13558.8589 207342.8496 8390.7619 14838.3594 11763.8518 7601.7585 7601.7585 8629.6428 14955.2061 11113.0361 15343.2499 12155.9786 15758.0202 5954.5014 6606.3771 12733.6695 5838.7585 40103.6759 5668.9747 12181.0828 6440.5612 8069.7297 8381.4554 3978.3268 10174.2754 262096244 xylose_isomerase_Oomycetes Carbon Cycling Carbon degradation Hemicellulose Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 11128.4711 6538.0469 17338.9025 4398.8214 4420.6388 5059.475 10568.131 6507.8557 7359.8539 129853.9396 6918.6718 23130.4531 8839.8793 7042.6097 7042.6097 10181.143 17077.3545 12812.2665 6570.3168 11741.3486 10417.9378 4725.7802 7658.5665 9556.4607 6042.8493 15678.8833 10647.8715 8818.3046 3965.9346 9970.3905 8566.7753 7193.8727 14344.3909 385741986 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 177678.459 7219.8421 11890.2849 7874.0872 2700.1269 5973.4283 4270.4606 6849.9445 27236.6587 5645.2386 251683.1006 23382.719 13140.8413 7775.8342 9559.6732 9559.6732 7546.8293 26292.3878 75032.4218 5260.7773 9717.6754 10073.4846 18073.4326 12041.1329 13979.55 51963.803 27887.8422 25536.3775 17346.9468 7054.4041 7232.3992 15603.104 8588.6046 16234.1495 331021412 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 5288.4274 6449.7342 11913.9408 2454.5032 2731.1821 5541.5718 4399.3183 3258.1137 126052.0446 5829.0524 7112.1675 3161.9596 3161.9596 4968.1764 10507.1348 8239.9254 6136.1048 9072.3754 3785.1888 4112.9935 11348.4394 3585.2134 13985.5796 7602.0797 11059.145 3823.6962 4759.4408 3595.3972 8346.3217 13816064 4hbcd Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 4453.889 6811.5372 2767.4383 102962.871 3923.1174 5580.4198 4601.2189 2427.954 2427.954 3819.6553 9560.9702 4454.8899 5198.2108 6886.441 6475.6792 2342.6717 2881.0254 6835.2249 9411.0944 5540.4455 5426.0163 1975.3023 2648.9917 3084.2819 2853.6192 5252.9524 53757574 ppx Phosphorus Polyphosphate degradation NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9321.695 13665.6728 9281.897 10628.9461 16995.6911 25005.3293 3616.5645 10003.7514 11823.5139 6518.9353 232315.2445 15855.959 10032.3163 8720.1678 7587.2499 7587.2499 5082.9457 15864.8914 8181.6888 8705.0859 12093.3438 13301.7492 5308.2989 5336.0335 9965.3443 13404.7004 22804.6724 12345.6701 16937.4752 5838.8616 6715.5959 6982.3149 6428.6436 16711.4485 371951383 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 56333.5317 10834.1126 21808.4456 17540.3635 31795.469 31883.4158 34717.7312 14821.0381 30206.3444 54704.5322 22619.8707 601797.9258 23054.1604 32971.891 52498.4966 30714.9104 30714.9104 21361.5322 42525.2547 26036.4238 68278.5773 50020.0339 66083.4536 32408.0306 37806.3999 42261.822 32477.2503 101564.2549 29025.0329 51473.6545 23335.4959 102991.3841 33793.2406 25945.1949 31473.2956 99036436 mer Metal Homeostasis Mercury Detoxification Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 63820.2021 23981.0961 85050.5222 18922.6061 9309.6291 27044.9439 17249.8428 10538.849 25766.6869 16431.8514 263769.0845 16977.6082 29461.5047 48156.5297 18841.5184 18841.5184 19055.2799 48460.6276 22068.5642 51616.5427 38356.9319 11314.5997 18725.5077 29699.5548 28792.2433 21625.7686 46813.6414 29333.1597 24518.9272 11816.8381 19810.7753 16166.108 20588.0595 28140.822 73763118 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37148.6696 30791.5743 5536.1363 7008.9946 4798.6892 63506.1718 12069.8011 4544.6524 18472.3345 77749.0479 5317.2394 5803.7232 6439.6516 10701.1592 10701.1592 86496.7845 29614.7717 24722.7388 37334.4833 15659.995 4252.1735 7729.6451 7209.0571 10034.1106 7554.9671 10147.0907 15942.6431 17141.5603 6061.3101 14330.3241 14245.4138 26937.9656 11422.8198 144899168 ppk Phosphorus Polyphosphate synthesis NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 22002.7048 14764.7359 9328.8728 18787.9872 4434.196 6343.0118 10399.071 5245.7151 15037.8437 34980.8184 11043.106 239728.7221 27646.6984 16360.7594 13905.615 6946.3448 6946.3448 8706.9586 18124.4944 13448.0207 13423.0406 20635.4433 15063.6957 8411.3056 5857.9431 17312.4857 7102.0144 24948.4649 19619.9334 23618.1853 7025.3851 10010.413 14619.4378 29277.5317 18729.106 227069681 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 13092.2617 5517.4177 18341.89 4945.0526 17666.8991 110596.9128 12012.6694 6174.8472 7257.0083 22770.4311 106732.2142 18712.225 11561.9355 20037.2675 14688.1206 14688.1206 9661.7632 7117.8472 4660.8595 65553.5235 3963.3406 2386.0174 10432.0223 7373.0665 13468.441 14021.7389 15993.5198 17346.2785 7498.3573 6488.3595 6244.2444 9967.1366 262404791 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 35407.2955 4853.4561 4652.7216 2241.5211 12280.1672 3536.7231 6122.6549 5484.7 4515.2873 11024.121 5842.0167 2184.2047 2184.2047 5036.7005 8630.1666 6578.8974 9393.031 6270.9987 2762.4935 19066.987 9790.9576 2151.272 20804.2692 32770.4797 22497.4111 6142.081 7333.7592 5307.0618 3752.2233 88863.7231 257169254 chitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 51127.4244 17362.5264 988787.3827 7073.5065 6673.6965 11090.0131 9668.8062 5666.4447 14112.5402 14857.9346 12163.0221 225703.9836 18237.7025 20305.2763 9355.6064 8306.7752 8306.7752 9668.5186 160948.3413 18055.0691 36971.8131 23722.2025 96922.1925 6793.4831 8461.7616 20996.1312 7508.7019 181038.3835 83436.2596 110537.9229 7526.5432 15271.0148 11202.1958 9623.8728 84413.8135 126434046 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 31506.5793 15123.9669 85134.6035 15823.0625 31650.0028 13240.9912 56259.3232 55267.7396 162467.7568 31380.2814 28725.0325 23587.5226 583116.5536 41760.5893 45800.5995 33101.8153 30561.5488 30561.5488 18436.739 42392.5717 37115.0782 26087.7457 58377.6833 612618.0335 39649.0802 17599.1113 29337.3064 21301.7035 68398.869 47489.847 30910.3027 35643.0339 28112.3732 37130.6062 23670.1066 39613.3194 226187380 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 27333.9631 15131.618 20963.8388 29941.4028 24645.3987 21635.8407 23974.1468 19908.7014 16229.5737 36547.2077 33989.8312 25299.2401 668826.6472 30884.0578 29063.4221 25217.9411 17573.8358 17573.8358 19198.7877 38374.0185 28007.1491 29429.4552 28294.2529 32923.6428 14359.1997 14346.7117 32102.1291 12334.0071 51920.5133 17465.8758 31525.4965 13552.0457 16772.5738 16748.8443 13847.676 36487.6621 260864267 glucoamylase Carbon Cycling Carbon degradation Starch Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 13128.2257 10908.1772 12988.0204 10698.9259 9333.5843 8785.4795 6259.7606 11078.522 15310.9948 7517.0048 367439.3359 12408.6191 15601.213 17184.2791 5314.0285 5314.0285 9798.0051 33608.4979 18175.6723 12423.5555 24451.8578 21238.1444 8591.6111 9122.5247 21889.6279 23736.9267 35077.9806 18449.5036 22092.8264 7749.9994 13848.0786 13515.1957 9702.322 29304.3222 312444326 cysI Sulfur Other NA Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 4736.3754 3969.1174 3941.1364 69591.757 4922.6636 8927.4738 6283.2834 6771.6198 4476.4811 2522.904 3005.7096 6680.6531 2812.0286 8620.0374 5381.8297 6992.5264 3477.9796 3885.937 4115.5937 2815.9046 7438.816 68345513 xyll Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 235647.0679 9638.7981 51495.2116 92583.3523 15677.4885 75705.8806 15239.8353 5297.1467 14559.0459 23845.0574 72517.2911 426557.7954 576975.3648 30433.1227 35710.7509 28795.5352 28795.5352 10119.5149 23857.072 13879.7095 21714.4754 14000.0375 26027.3028 10160.9283 12301.9185 654271.6752 12959.7371 39368.1298 42103.658 34323.2095 15798.2738 20723.5306 26826.2974 6823.483 15140.352 266631213 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6514.9401 200683.0999 4959.6397 145663.3696 2950.3686 3487.7417 5414.1926 4257.7519 83381.3801 320268.6824 4058.6393 4514.4739 2839.8973 2839.8973 484570.9958 9310.1295 6761.9681 969812.5493 11329.8549 4616.0147 51442.3961 7965.3219 8739.8476 3228.6236 19050.225 5892.222 10192.6005 5438.6878 6681.7277 4603.9011 4243.8513 8395.3316 187928869 metc Metal Homeostasis Mercury Detoxification Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 4577.5323 8308.4929 30774.4599 3459.5333 3104.1584 5231.9518 6583.6596 3508.9676 129758.0531 6312.7732 7979.6161 4683.7223 5637.376 5637.376 2950.597 9560.9145 5574.6089 8935.1628 2978.3882 5612.1037 6076.3683 3502.6883 12902.19 5802.8095 9050.6475 4193.4514 8566.5237 6325.2814 3875.3141 4467.7519 302860187 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium 1_1_47 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 20607.2831 7515.7761 2267.6304 7823.5806 3331.3577 3849.8186 3795.6915 432843.5272 8560.6297 4889.5034 6400.611 5823.5973 11293.0049 4599.4996 3492.4491 24135.8529 3617.6184 256729338 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 5984.0039 22769.802 41457.174 16500.715 7697.3742 99088.7205 11902.1989 13148.3853 64068.796 185866.4171 7910.2241 10300.6877 7159.7459 5188.4209 5188.4209 5237.7253 18911.7155 8832.7776 8585.774 7104.5032 5704.5701 5427.6688 35419.0468 10582.7064 30123.0141 14822.1997 21329.8526 5826.5228 7001.1579 8468.9123 6038.2866 7217.5807 145612952 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 5965.3212 21667.0592 6836.1874 7753.0709 7392.6708 2947.7211 2255.953 7634.386 12344.0182 5931.4162 138661.912 7753.9498 5813.8339 3982.4642 3637.1371 3637.1371 3567.4414 13901.5241 10295.643 24645.5081 11376.5904 12057.4378 7623.0364 25922.7397 12724.0114 7174.1561 17607.6793 11522.9427 10881.6783 6682.3453 8989.7041 8107.3942 7783.1575 25109.6039 78486207 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 79319.0579 16676.7053 28955.1752 67215.3314 64200.2444 28882.9801 48580.9862 62627.0398 31157.9291 53676.047 86096.114 32808.3273 1440339.4517 69253.311 86007.9392 64445.9813 39803.6042 39803.6042 40455.1073 92957.1921 68312.7528 42389.6209 66366.1348 90622.5006 35933.6658 27231.1231 73569.2785 24651.3221 103969.4619 58375.942 76376.0646 27664.0224 39044.5892 41814.1664 26058.4355 69267.5796 116249151 nahf Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5528.2908 19085.0318 4296.8713 3792.4287 9106.5736 10127.0789 4745.3898 94335.923 5597.6783 8339.7003 7014.9572 3461.3555 3461.3555 4675.1121 13179.0148 7858.1224 4672.8269 6916.7043 12463.634 5816.6996 3967.2144 15744.7027 4272.3408 16492.2005 6990.4735 11561.9747 4883.3706 6480.7692 9110.336 5582.262 21135.6764 400535949 nbzb Organic Remediation Aromatics Nitoaromatics Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 20965.5363 6795.1876 25172.0862 68333.1117 37394.956 37964.9917 26994.2482 22081.3684 12439.571 25768.892 15540.1191 577859.2067 22436.7681 41734.9693 64376.3314 25887.9576 25887.9576 15407.1754 43269.583 30985.6755 15290.8711 20289.5495 14363.6847 11490.5332 18750.3929 46253.0655 12524.4291 116525.2237 39486.3336 35541.1259 16313.9064 21129.5757 20871.8123 10438.6989 15113.4708 262404309 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8976.30685 5605.7029 5447.9915 10029.6623 4739.8123 4409.2013 7325.183 6851.83125 3685.5083 155500.4925 8034.60435 8395.90405 8378.7722 3337.12985 3337.12985 6195.12245 11836.42355 8582.57865 7624.388 13547.5364 11772.41635 4041.54465 4420.7998 10276.00105 4185.9132 19989.31655 8568.1128 18058.23655 5891.31125 5181.9398 8347.24415 4353.19405 11186.72705 214038437 ppx Phosphorus Polyphosphate degradation NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9592.2026 11067.4848 6999.7941 9643.8602 4792.0441 5409.0519 6236.1816 27910.3534 189055.7401 7169.2783 4243.7173 3583.8899 3583.8899 3814.6294 14030.648 6274.5289 6501.0019 96353.854 6610.6579 3032.8316 2340.7351 6914.608 2661.8088 12600.8058 6638.4413 8783.2254 13142.9666 5572.5394 9854.793 15654.2251 7662.1919 46095955 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 11135.5073 14218.6357 49101.13 2319.303 4338.2753 6254.6515 7656.4338 3680.8779 133965.8198 5673.9326 6498.5354 6864.4707 9171.6211 9171.6211 7507.4594 23439.5751 12272.9473 6814.4161 15664.4464 12751.9246 3247.6985 7375.4714 14641.5097 6496.5877 19699.3772 14361.4354 12777.0992 5913.9145 6942.4215 12568.5043 3090.1086 19202.3241 109689322 mdh_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum; 4332.9966 5524.0866 5531.5429 2377.384 2327.487 4460.7892 36553.5689 118206.0537 5167.6241 6219.8328 9262.363 9262.363 51000.2783 8307.2834 7001.6328 90944.0982 8195.046 4313.0184 2826.0463 3190.8607 7605.0785 3037.7218 15114.0952 6847.2649 8501.6925 5417.9448 5800.2082 10434.1578 9503.2929 15170.8271 56692272 nifh Nitrogen Nitrogen fixation NA Heliobacterium gestii superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium; 4594.651 10576.293 4118.2469 4862.741 6761.4798 155431.6697 4509.0758 3590.9548 3590.9548 4103.0875 4130.4065 10192.3345 4337.475 7884.2723 3482.5723 3049.118 3338.6557 323365716 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 37713.7519 10960.6303 14033.2857 24673.2349 50858.7434 7906.4392 13432.8945 27204.8536 14735.1906 23608.4892 23669.1446 23089.1169 464167.6336 38309.5444 36223.7608 35839.7093 41709.8535 41709.8535 19966.5761 41277.6546 16416.9836 22241.887 83356.137 279643.2697 20266.4977 16102.05 48659.7828 11660.2899 135441.4231 18504.9611 38598.572 16688.432 26171.5838 39282.8022 11067.6504 83097.5552 303279064 actin_Viridiplantae Other Phylogenetic NA Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 20493.2518 6655.95 24024.6528 17850.1203 5630.3317 7484.3297 28542.2254 8444.3193 7985.6334 12277.6189 6706.6126 261131.9189 16621.648 15053.479 5926.576 186700.4338 186700.4338 8894.9047 21723.0858 14582.6532 8805.17 15745.2558 21634.0568 9402.0381 9311.047 18505.7129 8176.3725 28268.3209 27597.8922 19584.5887 7913.7936 10571.3084 15703.7879 7964.4176 21099.3139 260414929 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 24017.878 13151.2986 15207.3112 20361.7074 17320.1513 5037.7183 21033.1287 30840.8822 11183.9746 20370.623 26028.3269 9897.9471 484322.4215 28322.0686 25425.0027 18268.004 11746.0641 11746.0641 18568.5956 31848.7041 26956.7503 29754.8614 30232.1138 30195.3949 14555.872 13036.7612 27603.9924 29205.3873 48174.2983 25156.0238 29030.8565 15793.88 15863.2667 16363.604 12548.0241 31810.4519 333979600 nifh Nitrogen Nitrogen fixation NA Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 5885.6072 5622.3887 8029.9868 2366.5169 2361.4357 3736.274 5823.605 72212.2522 4960.9618 4510.032 4272.6583 2759.5557 2759.5557 4028.5878 7862.5097 4564.8731 7205.9091 6963.5297 4655.6775 2847.8901 3317.4462 5794.8999 11065.439 7695.8618 2641.7028 4146.648 3645.2243 2300.1847 6317.1236 363993506 badh Organic Remediation Aromatics Other aromatics Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 193811.1449 37307.7632 60503.2938 9452.3091 12919.049 12749.7314 27899.3922 30934.3084 23286.513 23422.2682 170687.3427 760388.856 29009.5619 28465.5381 48885.8125 18685.5164 18685.5164 14609.6383 54272.7362 13296.6887 21899.1068 68355.4295 102617.3134 22004.1669 31558.944 36189.6933 33172.8562 70330.6145 32535.0599 43952.8791 14433.0771 55239.6963 91864.9305 22947.9295 191168.7434 71908750 fccab Sulfur Sulfide Oxidation NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 12792.9596 52546.4282 5242.2999 4147.5853 5353.6708 6907.4667 2727.0911 216532.9572 4728.1197 10476.0851 2919.7646 2919.7646 4097.1028 9581.8771 7124.3366 7366.855 8418.6174 8844.5394 3061.4201 8150.1559 12317.7935 4470.6345 12382.7196 10275.079 9716.6155 5182.8978 5490.9918 8668.0138 3754.1759 6479.5054 239636093 ppk Phosphorus Polyphosphate synthesis NA Staphylococcus warneri L37603 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 6420.8373 3989.6085 2589.2399 3483.0789 4069.3613 105483.0478 5185.0584 4229.2529 1935.5911 1935.5911 3312.513 8918.448 6487.6204 5079.9021 6007.195 5508.6502 3344.3964 2321.1713 2191.2681 8617.8536 6807.9157 1842.588 2561.8646 4120.7931 2796.1323 8828.155 168196171 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 16245.384 10542.2499 21306.2365 8682.4691 11735.1528 10575.3398 22762.1368 14169.1429 14374.2716 258488.5847 9535.228 53491.3478 57866.7402 16220.5847 16220.5847 10279.1012 33014.6759 10764.4728 28763.3133 20032.0566 27494.8489 6116.9951 15417.8458 28111.3288 10797.0147 42581.6937 20135.9387 15058.4483 30010.1941 11316.5524 14418.4001 6479.5084 12032.9263 398383982 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium sp. AP49 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 448612.564 95819.0557 298578.4019 446878.5534 551759.7415 236977.9434 421271.3376 642770.6118 293339.814 361871.951 576463.1072 324623.3444 8154338.6491 358884.1263 472082.2162 1217732.6819 481499.6031 481499.6031 237626.9459 555580.0014 304065.4628 364161.1339 523328.8026 570257.4861 349636.7806 295053.1486 402391.5414 304122.0508 859172.9652 286259.0456 450681.3364 316375.5794 300867.6896 359901.3718 305247.2049 721449.0766 160883324 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 4439.4689 5560.9348 78062.2138 2863.6319 6189.8724 5190.8953 6305.6439 11148.4517 6875.5304 3724.2756 3143.7298 4013.7004 112462205 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4339.6495 4820.6204 2908.2145 4771.4005 49721.8099 4710.5312 3837.0226 2053.1902 5647.2773 5667.4466 36971.326 10692.7611 2845.2619 2539.4137 3226.5737 11816.9874 55229578 ppk Phosphorus Polyphosphate synthesis NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 7064.8889 21229.0746 2292.8495 5896.4604 66993.7338 33107.0057 2500.5169 85699.1622 13351.4484 5309.492 5309.492 4358.2373 8861.7974 3061.8257 4574.1816 6110.6865 2451.39 2275.88 17011.1143 5941.2844 2516.7797 6009.9645 8240.5335 9544.2177 81300774 ppx Phosphorus Polyphosphate degradation NA Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 82703.4612 82124.3655 12426.2166 13182.1199 7372.5423 11228.2847 6948.0391 5153.7619 151315.1532 24764.0695 8331.5887 183257.8136 12459.3021 22612.3634 24899.7341 6949.6711 6949.6711 7860.4856 14521.3107 7775.1302 12482.327 12112.1466 13554.8597 4464.8532 15366.3105 14495.3232 6583.0137 17833.6112 7275.8974 15926.7176 71216.6207 11076.2998 43551.8082 5769.7694 8207.0525 374426399 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6537.3059 12761.078 9693.992 7923.9895 6352.7805 7354.8948 3312.546 7297.9409 5584.3994 5354.7378 72257.5628 6323.1027 10197.2603 21951.3467 44935.1555 44935.1555 4353.7687 11804.0985 6871.9811 16322.0207 19641.4684 5828.2136 5083.8844 5052.4069 8337.9237 5963.8631 16436.5305 8557.8412 10084.0655 3920.4976 5930.3394 7397.8248 30190.8573 8644.6888 56809495 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 39880.4928 6365.3162 6027.5744 10398.3502 5870.69 5920.5837 5847.044 9933.9582 12461.8377 4305.3134 165897.9423 11374.8048 11363.981 11208.896 28986.0876 28986.0876 9284.6774 29358.2393 19962.7195 15297.9364 41028.744 13790.1018 6261.303 6123.1697 15557.99 6083.0957 29135.6465 17586.9262 20347.7117 5112.0479 7624.5454 10670.1181 5648.0075 19205.0253 315588570 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 81575.7356 31285.8566 73136.6027 24110.0852 6524.6036 15345.5167 133166.0255 10109.8937 27100.9039 42043.8826 25144.3 361458.1278 18142.4801 25214.0183 29163.9167 19315.4863 19315.4863 16426.1851 31040.1593 23335.2347 20964.2798 67121.7352 37408.3588 15347.117 15502.7168 28691.5249 12810.6996 44427.0324 25067.0774 56964.8213 9895.7631 16503.2194 22857.2787 11028.0147 37605.8219 51857159 dmsa Organic Remediation Others NA Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 6057.7378 5150.8854 10215.6907 4080.1515 3897.8093 2889.0187 6008.9895 5709.0117 3527.2239 114574.4508 10387.6865 3252.8964 2038.0179 2038.0179 4300.4972 10133.3196 5395.5872 4266.7854 10791.0583 5188.897 4044.8052 2838.585 6127.2816 2651.3976 12157.8596 4865.8342 7194.793 3021.1906 4430.8736 4774.0015 6884.6876 16504.9463 262335868 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 14584.9928 15275.7181 6404.2753 15267.9431 8811.3421 7250.2706 27859.4703 9675.9456 7671.0168 8854.037 9333.3539 8381.6676 188249.1499 25490.2958 11312.088 29399.0317 9601.4644 9601.4644 7954.5985 18192.6163 12189.8917 13540.9555 12608.8714 13513.8559 10483.7763 3225.306 18171.4764 10167.7324 32981.2772 8269.3242 17463.1234 9996.1624 9713.9896 20314.1702 9180.2681 71298.7123 227504849 terc Metal Homeostasis Tellurium Detoxification Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 47700.3937 21382.7812 15426.2081 9934.246 16467.3097 35034.2546 19833.4616 19683.384 22203.4529 16562.1526 689617.6639 31577.5916 22504.3329 33021.1481 18425.8547 18425.8547 14437.3046 37940.1885 24769.2406 30718.9277 26979.7591 52415.0525 13564.7632 12219.8782 31304.1451 14867.3124 43747.7418 14727.9269 28348.4861 16284.4474 17819.1836 25983.1799 14528.4405 28914.951 194312822 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 9107.8767 7667.6991 3783.8728 4416.7193 2565.9207 10666.5403 7399.274 5373.4053 112645.4379 9156.7115 5525.0173 7754.8543 9753.269 9753.269 5193.1278 17066.3206 8015.9413 7754.3335 11523.7078 12817.9243 4071.5638 10168.4439 8472.2212 3405.45 19148.6832 5802.0475 11283.0168 5715.4854 7061.1203 5742.3646 4933.9787 8994.9826 24987055 arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 161008.4045 32716.3662 524974.3119 96302.9995 275150.9133 34848.196 126254.8815 84557.0281 463421.6084 104422.1938 125987.0365 111401.2964 2663464.5217 294174.2105 213351.5723 276288.0128 148252.189 148252.189 76809.4715 129039.4252 102819.7489 174509.1021 466910.4374 206500.6358 67222.3776 85033.5801 109159.8845 70277.9402 300872.3167 189888.5135 147530.7127 52140.1033 102182.5499 88743.8667 70146.7831 195931.7445 390454188 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 4498.1046 148551013 tfth Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 7299.2354 5902.5808 2568.7409 2811.862 2955.7985 4192.7498 7854.0955 2950.0876 126359.9035 17695.1871 4277.8981 2485.5083 2485.5083 5273.7083 8918.2033 4767.8372 6005.3815 4701.7875 4142.4991 3286.9561 5367.7687 2924.3546 9814.9356 3860.3293 6553.7443 2583.8838 3936.867 4584.8633 2852.6876 4325.4416 219848482 sdhA Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 13505.648 13000.4287 2747.4886 7311.9429 5590.5665 19214.8449 8459.3437 4582.9051 4582.9051 8254.7168 9464.5258 3583.9064 13837.138 6552.7493 5013.7358 6069.9263 4576.8773 11424.4769 7610.0616 3334.7705 4238.732 4404.5354 6814.4312 121594453 chnd Organic Remediation Other Hydrocarbons NA Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7494.2689 15339.9098 16281.8944 11404.0787 3366.4286 3241.248 17980.53 8840.2072 5282.0624 673650.182 8924.7895 4817.0319 10100.4221 11528.5442 11528.5442 4753.6093 14513.1746 8221.7836 7746.5684 24128.8074 8925.2954 5756.2991 27533.6372 13865.7077 4322.6355 17902.3797 10847.3596 18679.731 2781.5136 18548.4581 6671.1293 5985.8688 14596.2285 89512978 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6703.5275 10853.3316 7011.4079 59036.08 4988.1877 9340.7573 4560.5352 2716.7028 5611.2746 3720.217 3450.7261 2666.7162 6002.2011 186472723 pcag Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 363121.6282 41271.9107 102577.5281 771037.1644 286899.1939 58275.0078 118378.3075 229369.5108 138566.8178 178674.3137 426364.2593 237287.8538 5193460.9272 180950.7389 830320.0038 562889.2005 304429.3535 304429.3535 175033.069 253206.0646 261075.8409 122625.4899 446063.9952 380492.6334 138719.9842 122362.8081 114097.1289 209325.9879 502167.9899 170670.9696 339722.1631 68174.0136 175648.185 161179.1295 131248.0626 588521.0284 351595036 xylanase Carbon Cycling Carbon degradation Hemicellulose Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 5106.0246 5866.7977 20915.9798 5126.9735 3723.5272 5184.0429 2392.2178 4761.3946 5827.9048 2889.6011 175948.4758 8830.7314 8676.2512 16615.6789 7347.4008 7347.4008 4224.3056 13605.0294 10069.11 5402.1312 9599.5444 8458.7325 2911.8146 3974.5363 11452.1652 3613.6031 13792.4449 9048.2799 10553.2827 3674.6676 6324.7975 5746.8203 3660.6286 9396.0113 116691204 bbsg Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 14368.7862 9072.5258 3423.1406 9252.2551 8380.079 39349.2443 30955.9761 74944.2315 19495.281 138814.869 9451.327 9451.327 13778.1455 4677.2299 6535.0027 15167.3833 12025.4115 6873.052 11278.5985 11842.9823 21998.8685 24871.0359 12015.9144 7833.9456 12660.8984 9788.0755 12797.3273 23429039 exoglucanase Carbon Cycling Carbon degradation Cellulose Cochliobolus heterostrophus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 53467.0989 507067.0419 87225.3511 20969.3471 52824.9374 4251.7355 134321.8563 5669.2841 9949.4958 17127.7655 12310.3278 322846.0067 8025.7189 5783.9243 6286.7374 40750.613 40750.613 22831.1617 38390.4683 7236.6793 12377.272 15335.3674 15374.5692 4609.0736 25018.717 16129.7143 6762.168 34611.6881 226612.5319 13869.9023 7808.1703 8810.1546 8951.9497 6848.5664 8666.335 116255285 cmci Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 19954.4203 13885.6035 2807.4892 4342.8069 5893.5969 7666.3462 3021.6446 82327.8265 6191.7451 8658.879 3422.9086 3422.9086 9142.2437 12986.3304 7210.2966 6229.1818 5964.5051 7625.0809 5660.1545 11253.3079 3240.4563 14739.567 26176.7542 15764.491 5694.6925 4488.4211 5355.7133 12789.4014 262195882 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 100245.6694 76980.9752 355101.8543 37305.3138 219748.6912 73963.8862 55184.0612 82325.0343 108320.2968 70475.1188 68596.5641 79745.8027 6000988.5958 83891.569 115366.4125 239493.8584 73995.2268 73995.2268 62735.252 134802.4944 47657.2274 51419.211 69676.2588 77749.1167 108140.8663 55582.3542 274242.8398 52411.4534 168994.3047 259485.8416 129324.233 34258.9732 79209.1688 74705.3054 51052.7359 102591.2952 6460329 alkk Organic Remediation Others NA Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 69313.4177 224445.3414 387403.1835 44505.716 3598.0483 5006.6424 104102.3645 7511.8319 4193.1402 4193.1402 10578.498 4497.2001 5786.8668 4974.1757 9127.219 11558.1518 7475.4003 4027.9932 5081.8972 10450.2658 388604769 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae subsp. cloacae GS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 71501.9614 12447.8016 24979.7958 9311.6856 37091.6628 8096.1435 7862.5818 29678.8062 18449.2667 329814.1059 17236.5407 14445.3002 20425.6452 16607.1957 16607.1957 27168.1663 32970.2508 11663.9182 18961.13 23471.8401 27306.7167 14395.4988 14042.8418 11622.308 10366.6986 87553.1383 25538.4292 19014.8004 7874.1465 12505.0004 33074.5724 15823.9708 18015.6795 86605117 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 27349.6243 15282.2137 16181.5029 33680.0463 11746.52 6548.5607 11409.8832 11807.0431 13282.3266 12472.9165 15757.3592 6420.2088 439466.2417 17752.7252 19613.7991 28257.6839 8982.9849 8982.9849 13931.9702 31186.4412 15502.3196 24102.1417 28147.9664 29392.1519 11673.6877 13294.0511 22853.2022 15400.6252 39350.6653 20555.7748 30295.2703 10328.2434 14570.0524 17949.866 11307.9155 33002.6414 381382505 mer Metal Homeostasis Mercury Detoxification Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 4499.6666 4806.3636 3919.5209 4394.5243 9851.9905 6794.0914 81882.572 7116.6177 4723.4099 8131.1638 8497.891 8497.891 3180.7103 6124.672 5966.8442 5045.5618 2913.5082 3506.2701 4936.2991 10822.1396 116034.6605 7801.0756 2563.6328 5352.8954 4456.0955 3214.6884 90199375 scnabc Organic Remediation Others NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 15161.6687 10504.8905 19556.2736 7503.0006 7670.2281 13559.7519 4321.9427 7413.3996 18860.6304 3794.0474 293518.8092 9726.066 8788.4915 9164.5623 4485.0531 4485.0531 7002.9321 17914.2543 10481.8656 7171.202 8557.8769 12758.8666 6065.1894 8339.0931 14900.0973 5562.0946 24769.1356 8303.8011 14637.5796 6155.1977 17987.4195 7606.0378 9630.2096 10673.2927 363713893 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 5487.3323 6708.9415 18715.8876 9572.407 4206.0026 2496.7368 2990.0158 4182.3142 7568.7765 3651.0926 58817.4875 6175.9472 10122.7799 4005.2351 2927.55 2927.55 2759.5771 9500.9491 4646.787 5817.3764 5630.6313 2204.9649 3322.6603 8450.19 2914.5342 13535.9755 4073.6567 7534.4146 3621.7551 4756.5624 6344.8385 2702.1498 6670.5029 261416143 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 4416.102 2626.2866 7363.3352 10372.3901 5891.924 35357.3491 11405.8708 11405.8708 10368.9066 7404.0651 3689.2651 2719.9988 1975.772 3180.4423 10040.5671 114705251 amyA Carbon Cycling Carbon degradation Starch Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 47965.4144 39824.7027 27891.5486 71564.2524 62099.4632 14518.9355 8116.0363 13146.0835 16859.4398 11737.0017 343637.0622 13146.4766 23956.558 18436.8726 8035.9214 8035.9214 27680.4753 20605.0052 16909.059 29981.6739 31062.9495 17997.6892 7278.9939 19359.4729 26656.6983 10179.3775 28174.7056 21084.2193 25521.7872 9743.6467 16754.7656 62846.4155 10478.7921 9483.8402 121554404 TIM Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 54089.1217 25655.4767 18215.6367 15527.9893 55017.6812 6409.0194 29096.9322 27398.9703 33530.3054 16660.1459 33754.042 79503.298 423178.7192 34894.3731 94160.215 22544.4298 32461.9569 32461.9569 13771.9477 36805.8289 24691.0435 16303.7914 51490.9009 57698.3774 37732.5065 30055.5006 34732.3947 116981.4504 58168.6315 52482.722 61547.0821 22211.8262 24409.8049 29390.2119 22007.4405 57930.7148 93354286 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 625209.0249 30687.6625 1971409.977 292168.7524 142158.9012 22629.3758 72536.9475 67799.1082 97114.5914 247539.6292 157879.8766 220792.7432 2983667.2935 107690.6285 240594.4388 102060.6539 120264.6473 120264.6473 109763.5748 132238.9419 171127.5246 158916.3745 168612.3241 97928.3699 92795.547 87484.3299 104872.3354 134615.6208 1031223.4647 185454.8685 197844.1309 133165.2454 112605.1891 138499.6915 178085.0026 107642.5139 386436186 aln Organic Remediation Others NA Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 22288.3353 38429.2854 14364.3273 31793.4981 8608.4797 65220.85 23107.7149 29186.3573 42096.4133 15091.1533 400115.1943 27661.2859 59708.5447 32652.6819 28679.1153 28679.1153 11512.5557 79087.6073 26732.0283 104148.5801 22159.9557 8150.25445 23526.1357 30381.5096 72682.5043 31353.1681 22095.4165 33166.7499 33137.7589 162072864 dsrB Sulfur sulfite reduction NA Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 44117.5825 23303.9232 43800.8799 38322.3599 6110.8648 39387.5011 71005.7475 26969.2198 28937.0308 32735.5065 35574.6125 526323.7631 45828.8478 44150.6593 51682.5559 31359.9835 31359.9835 22723.1974 58024.66 38504.5668 83191.9466 87172.3115 81606.1266 19102.9234 21661.1161 62016.0291 22068.0667 88338.4642 38552.7197 42834.4575 33394.1107 27787.0719 44444.3265 27963.8061 31000.4804 86742346 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9579.1749 9897.8478 11443.9107 6730.757 18640.7668 13012.124 2502.0206 6059.5455 10463.1809 7722.755 171844.7123 9544.322 11976.5584 8842.0964 5363.2601 5363.2601 17763.2144 15229.5739 6565.1198 10781.3201 6374.8827 6435.1025 5870.0464 5207.5606 13940.0659 4769.8689 18696.1033 10935.5923 10580.3586 4935.2567 5724.3828 4384.3837 4424.4897 14870.3644 386856920 nira Nitrogen Assimilatory N reduction NA Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 9147.2006 7552.8501 5098.2066 6792.4115 4357.5519 9197.6103 4513.8148 694482.6903 8532.723 8405.1446 8405.1446 2815.6899 10591.1789 8476.5112 3940.246 9332.3599 112369.0958 4526.4463 5837.0296 6475.5645 3856.969 11654.9918 6003.8867 6448.1759 2768.0971 7019.6571 3566.2179 4823.756 60009.7269 156860036 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 7033.4911 6678.7497 2817.4239 5207.9682 2196.9225 6159.6246 6123.5846 8225.2564 102144.1097 6681.2272 10130.758 6106.3581 6858.8011 10194.6515 7790.9274 14234.7577 29978.4847 9682.3556 4390.8327 5686.3023 14900.6664 4179.7346 13715.5075 9605.048 13748.1572 4015.257 3296.6576 6014.2112 4865.5173 7644.2091 83316828 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26263.4164 4758.3185 4298.9548 9114.0458 20161.957 8153.8269 5995.1947 14631.647 278983.5376 7634.1486 16879.1511 6699.8278 6699.8278 5751.2289 14326.031 10105.0103 57299.7571 37182.5328 10047.1831 5009.2246 5026.5396 9456.5258 126235.5233 10183.5109 11260.9984 5586.0742 6736.7015 22693.6712 4028.8984 12270.452 302436234 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 43853.3859 50692.4233 10575.8468 10601.8402 9719.0351 38375.6825 200681.6933 69656.0364 21560.9611 27234.497 21023.7296 323863.9762 16248.1512 40764.6911 34885.0441 30966.1871 30966.1871 17317.4115 46940.2304 46496.0442 30305.74 34911.5149 20693.5052 37081.4667 35170.4467 32315.1882 26956.3993 65337.4389 44841.9694 21150.3441 18111.3067 29823.3347 46524.5391 13029.0236 26213.599 114540427 pcag Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 387206.403 24481.182 34574.0956 84688.1741 53144.7896 15239.2828 45205.2209 39867.9557 48130.3547 122329.1495 25169.6174 591421.6678 46232.0523 63717.9149 287243.4628 34603.9518 34603.9518 26403.3919 41352.7574 24460.8358 18300.1479 46911.652 28120.8037 23351.8376 18920.8836 32032.5585 59687.4026 51825.4849 47024.7616 39366.9273 23387.9125 66622.3127 18811.5043 22366.0681 22850.2298 331087216 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 9_1_43BFAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 6447.033 8666.4952 2885.2768 26184.4053 6403.1016 5400.4264 8088.1896 8342.3351 131519.241 6317.3052 5721.6806 2118.5152 2118.5152 2997.24 11431.0951 41994.3733 6762.8268 12634.5691 6300.2325 9486.1473 4182.7249 14197.8974 39819.1101 45255.0692 19831.292 6653.0164 3333.2561 3939.442 6940.7281 4201.7974 12762.0092 385656233 nagg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. WT3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 45552.4056 5876.5175 7816.3067 7810.3566 5676.4357 139273.2905 4435.8171 39631.7374 3980.5009 3980.5009 6946.9602 5939.6409 4968.686 6250.5367 2761.0202 3492.7898 45437.8265 21322850 urec Nitrogen Ammonification NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 5196.2334 2458.885 21427.2158 3723.2772 4935.5605 2229.6393 3055.8058 342816261 cmua Organic Remediation Chlorinated solvents NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 15941.571 78902.1831 13408.7607 13259.3178 18278.3213 4843.4529 21011.9451 11348.1714 12058.8189 16932.4087 22523.6338 9499.8586 352184.7175 431163.2748 58997.086 66399.5517 14385.3957 14385.3957 18748.9361 33877.1867 17158.9036 23925.1106 22334.4949 56648.1086 24780.2971 16268.3907 23273.982 11669.7181 50464.6653 19260.235 24345.6485 14687.8154 14788.0565 18236.4718 11882.7154 28358.2287 153155 amyA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5528.9575 6634.9946 7065.3814 4680.4155 3130.0183 3732.6127 3921.1062 6006.5465 4340.7707 77548.4732 4237.6849 13026.2028 5950.5464 5950.5464 4463.6599 6591.8079 3883.2392 22280.5155 4097.4772 6676.342 3058.4339 4086.4617 9428.4835 2618.9427 9376.076 7066.3647 15848.9451 1974.7967 3359.7326 3935.4727 1959.5322 33456990 one_ring_23diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. A5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 1054008.7853 6935.5758 8996.2664 14224.2279 5170.9659 4100.7877 4809.6485 5943.3288 3012.5636 149436.2393 8331.9993 6671.7824 5279.208 2826.6715 2826.6715 3752.6976 10842.7002 7380.7536 12400.2338 10629.21 8175.2349 5595.6626 3226.2752 10337.5294 5455.4919 14792.1342 5702.5046 10387.8546 3767.2355 4539.3053 5566.9093 4841.5271 13249.1095 116804538 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 16565.7641 45074.3622 1677414.9351 7074.0694 6820.8116 27187.7428 17865.2089 27614.0002 11010.9199 11967.1238 11574.755 88172.1775 7413.5968 8298.9983 14783.0098 12601.973 12601.973 20062.7055 44143.6548 19510.7852 42653.5567 45052.8839 18373.7133 21071.2076 6603.2243 9085.4341 21140.5161 31113.6253 12277.6709 9494.3571 13366.5734 27431.5748 20075.1751 14805.0787 12505.4098 164455640 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 67049.9865 12702.8649 325561.6012 42868.8607 18139.47 20704.5215 75824.7412 99741.7551 31637.2526 29483.3061 59184.9816 55571.5015 32348.7561 75192.6963 60080.0948 43392.336 48824.7302 48824.7302 20923.4268 68746.6612 26735.8484 348804.2665 120949.0998 33054.7802 24624.2416 40650.7654 63670.884 40008.4918 129372.1578 55346.5734 51208.6159 21481.7142 36042.0501 68858.5235 32969.6985 62800.6444 147886164 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 12271.1571 12125.6734 13346.5719 20712.6749 110722.6518 18889.2145 45591.3095 280660.278 4386.63 15629.7246 20539.1209 15824.3332 484378.7446 20184.9677 19303.0149 39621.0755 22919.8647 22919.8647 11104.2009 33042.7167 17529.4088 10001.437 14672.619 36518.8438 8546.6353 16376.2706 36645.963 8781.5648 52426.9691 34836.916 33506.6847 13120.3385 18487.1426 60676.9963 8480.4437 10127.6568 145583129 protease_serine_fungi Carbon Cycling Carbon degradation protein Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 4687.5049 21878.142 2774.4465 74157.7166 3791.7884 5945.9847 3638.5697 5469.4658 8537.8285 5667.3268 3258.84765 72148.4224 256681301 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 134185.1986 61165.0917 119265.63 26064.9982 37600.2237 15322.809 136939.564 125459.5858 70027.498 179603.3695 106858.2846 128379.6972 2978680.9553 68848.0255 219121.1182 117651.1363 111808.6445 111808.6445 92527.3708 391127.4007 99507.5633 173322.5119 231233.8041 97182.1786 130786.296 96508.0714 70668.6695 161443.16 173329.4342 62538.6479 142068.2441 184835.2917 91608.9486 84544.1825 81717.3433 420075.7663 146343609 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7349.6617 27398.3218 22974.9898 17465.878 8681.5105 35147.3289 5017.68 6156.4208 19496.78 220672.4971 10409.9055 5906.8902 14031.7511 6470.177 6470.177 10894.2567 13087.4034 9370.0118 7012.6159 4263.7871 13465.9011 15043.3498 9489.1686 36218.6584 10494.0712 25225.3024 4177.5883 23398.1035 32605.628 2195.8877 5353.0081 350548272 RgaE Carbon Cycling Carbon degradation Pectin Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 5334.3674 4219.4071 2962.1688 4623.9528 3715.3447 71293.6402 6413.2862 5539.9581 7200.7148 2895.0211 3870.176 5557.2447 2107.9432 4670.8605 297548667 xyla Carbon Cycling Carbon degradation Hemicellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 6595.841 16149.1652 10957.7626 4032.4822 2990.3663 5086.745 27967.7382 28703.8197 3898.4695 3898.4695 8484.9096 18020.8868 4510.2379 16224.4701 4796.9516 4460.0474 4633.4158 8041.3264 4472.8578 18253.8841 6574.0303 12778.7281 4644.561 7897.0019 14482.2409 3204.3666 7131.9417 373892887 amyA Carbon Cycling Carbon degradation Starch Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 264454.5104 13364.8804 19394.6749 8788.2167 10379.5133 31891.5077 37859.978 23593.628 27406.2554 68432.6505 320515.9803 57488.0917 118795.8761 533405.205 183179.8523 183179.8523 16207.1282 69649.0523 14270.3896 28347.2502 90454.7913 19202.9723 19246.1492 23413.0269 32901.72 17456.3749 58906.918 41927.2208 64891.9764 13850.5498 22365.2803 33501.3485 35398.2404 272482.8794 148474760 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8903.5431 4775.7046 5294.0045 4774.2664 7332.857 13578.0463 10977.9443 10694.9837 81602.0388 6074.9663 7941.2231 8266.9987 4013.198 4013.198 5352.3234 14366.3556 11915.812 16069.3787 14209.116 7767.1998 3520.6036 5408.2519 9688.3574 6407.9325 14566.6766 6710.6784 10767.8486 14968.3513 6473.4386 10925.5329 6209.4265 10531.8435 404259649 bend Organic Remediation Aromatics Aromatic carboxylic acid Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 108906.6611 174533.3239 14483.904 10677.0107 10169.81 26670.9235 17947.983 36403.4172 18029.1385 36574.3951 22257.8163 271960.8733 23090.694 37970.6737 48121.891 30290.4395 30290.4395 39760.6247 61420.7091 32797.4808 30437.0328 62172.6641 27323.1604 40041.5155 13042.6865 23705.797 20073.5254 134737.0541 31213.0009 37618.1252 18179.4582 34477.6002 42471.6833 18665.5649 25752.3951 224579309 rubisco Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HRh1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 31389.7342 12030.9709 26611.2276 24033.9354 42509.651 11268.2664 37300.7076 30510.7573 17956.5635 38257.6623 27334.208 19714.1286 615232.7602 24225.0976 39915.1028 46065.1793 33720.4567 33720.4567 18017.2584 63000.52 26335.919 82307.8241 19731.8736 38006.9835 15224.8507 45477.0764 42280.6953 33931.4002 74638.3607 24642.9685 96955.0502 19447.6217 71784.2585 23512.4499 15065.307 34632.0511 145217169 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 59001.6466 16138.4352 78249.2153 7338.4037 122987.99 12874.921 17097.5804 11147.9176 9381.7738 12215.702 185445.3159 55947.1193 248987.9379 10264.1258 22301.8096 42760.4946 131469.0148 131469.0148 30501.5179 23481.0676 17516.1451 19884.4016 40015.3142 40741.6 25848.703 35417.0122 16598.214 28048.4746 46683.356 26805.3949 29001.6339 13030.8947 27936.5098 15477.3127 18622.1331 16120.0096 342859937 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 15057.1422 10989.8247 8073.8685 19399.7944 10196.4659 6905.0956 6234.4528 12780.0506 16923.0854 10453.7312 289620.7053 14247.3953 17283.5669 14775.1119 5920.6927 5920.6927 8017.8241 20863.1548 16413.6797 15062.8893 15671.0162 14496.2399 8433.071 7333.9162 15595.63 8703.4674 29548.204 13021.0955 19822.1433 8413.6051 10204.6718 10054.4623 7987.451 21626.1597 338822342 amyA Carbon Cycling Carbon degradation Starch Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 30508.846 15303.0302 547994.81 10080.7597 4927.0386 4654.6714 24371.474 2756.0496 4339.0479 5058.4173 291421630 fosa Virulence Antibiotic resistance Degradation Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 12934.8381 188511.9269 4396.5363 3804.9268 3772.7695 5483.4902 6441.0257 12159.8173 119907.1723 6704.6134 21853.6623 6788.6997 3571.4356 3571.4356 3866.3203 18113.4033 7718.1137 10275.9039 10349.4821 4890.6212 6757.8296 15815.9205 13361.8598 16328.9986 22374.134 4143.7366 6919.1739 9954.6279 7599.4497 24816.0576 5448.1271 9645.4386 255010034 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 4457.6681 12218.1204 8411.8178 3666.222 9085.0874 89069.6254 4586.6556 5354.36 8834.9757 8925.7158 5530.8845 6002.4983 5405.6034 2830.7417 11247.324 13832.0047 6885.0753 9649.4423 3926.883 4140.4909 5922.9209 121609738 catechol_b Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 4325.2859 4610.5389 3599.3789 5417.1739 4314.6175 5336.7194 61681.6658 4908.8913 4692.4955 4306.071 3458.5813 3458.5813 3792.249 12709.8066 4576.3059 4735.5941 7160.2169 4297.6022 5536.0332 6594.8753 39001.7311 3024.2597 11741.1609 8318.9556 4134.2831 5160.5306 7071.3236 2797.3386 8102.5612 116804622 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 1250047.5531 6944.1123 25891.1537 6099.7444 19109.9822 8768.1738 10443.1588 19483.4365 13328.848 259201.3217 12249.1429 19025.7668 11072.169 8255.0891 8255.0891 10017.0012 23850.6212 12362.5841 24590.8501 27668.2064 11392.2886 23208.5356 8457.8932 14990.2866 9047.9453 43040.6764 21101.4767 17792.145 6307.6685 14262.1424 13682.8238 11827.5586 13456.5181 27802969 hcab Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. JS705 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 27825.4141 7008.6082 4331.3688 9276.8394 5676.2491 10816.68 10357.7615 15720.0905 14076.1436 31106.5277 28216.1407 167285.4377 14261.8116 98467.6746 61588.1908 22798.9917 22798.9917 9617.0489 22163.9065 10934.848 8904.364 62626.7778 94179.9859 8356.872 18959.8155 50136.3728 23151.3835 57568.2533 41964.813 32283.172 23980.1324 40670.0521 15802.5695 4637.0361 8603.3733 164455604 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 22350.4839 11857.3543 12577.1862 17752.0023 19387.3629 67540.7795 129521.0898 19611.0018 17241.5304 19853.1068 32433.6086 303550.4112 23763.2703 22759.5769 16706.439 23808.7942 23808.7942 18886.1045 31101.2892 21391.9675 53463.797 21049.5784 15705.5896 11693.3031 8946.0949 25538.9644 131461.3658 44118.7696 15800.508 31077.7195 24878.6072 11425.2431 35756.7608 25285.5625 39494.7545 33634768 Sir Sulfur sulfite reduction NA Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 17930.3681 19273.5144 44689.5293 11813.4172 12775.6538 8346.8459 27167.8793 6755.9072 65049.6054 4431.8315 6372.6078 8415.8074 8415.8074 3291.883 3359.3239 6362.9364 6338.0743 3684.2763 29933.4852 8219.7123 5338.4917 17573.6832 3114.5422 3020.3606 62001498 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas viridiflava superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 136242.0017 22564.9555 68214.3106 65208.1348 29839.7531 35076.4817 71006.5542 72474.9201 152261.7765 93400.2131 96063.0436 68381.5231 7227190.6644 93408.7667 160934.6161 148056.9296 53303.4961 53303.4961 48815.0166 116495.4084 66908.5084 151789.9058 93087.3522 287903.2791 50417.9803 53640.7528 80503.6799 75994.16 198259.0513 133118.5047 98650.6593 59060.7889 68835.7968 72438.4285 35635.56 110907.2382 156742299 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 16905.6785 10633.9046 21267.2663 15931.7497 22476.6455 18572.1245 12744.7307 76790.8021 17109.6655 15711.4554 11569.2799 269667.442 20415.6163 18380.4433 25663.2505 11754.6742 11754.6742 10142.0942 32841.4552 17400.4584 23452.231 233473.7612 17550.1627 12952.1883 16571.7404 26002.3372 101397.2597 53389.9043 36080.0071 26075.2439 11192.2646 33643.8608 16361.9447 11962.0559 15503.9324 78513569 badh Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14234.3581 19336.4834 43480.1137 94481.8121 6502.0048 88855.6122 37212.4899 7019.384 55675.6959 9022.4213 147571.8522 9182.8655 18258.5077 111165.6382 8131.7621 8131.7621 88942.2369 10799.274 28420.4766 338696.2132 19736.21 11849.5755 13469.3443 13925.5627 21295.6504 6649.9036 39171.1563 34138.5066 41815.0435 43990.2632 5324.974 9607.6502 6198.4801 41941.5688 94549437 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 115726.7893 160377.9782 5365.0533 4594.2895 5722.2249 369226.4827 11260.8925 2980.2759 7478.0468 11796.0445 4096.2171 15625.1167 311217961 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 147631.5027 14595.4877 13237.4056 124235.4151 12755.479 26964.7771 19818.686 30606.9367 15419.0315 114764.6476 77669.6854 60095.8744 2556937.9099 29040.5831 57907.9341 223756.4554 78493.1551 78493.1551 14097.4881 55966.1962 43552.9206 31141.0873 51244.1255 54719.5312 48159.2156 37843.1244 42530.915 25235.0649 240872.0296 43089.6785 37358.6514 14699.4844 45407.6168 101196.6746 21040.1455 81082.2135 167769744 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 149485.8536 16809.8319 354866.2248 104273.0221 800003.901 43619.9535 576447.2103 247291.9525 152090.331 185453.4041 136589.614 174595.861 7858810.3867 331847.0646 222132.8483 586844.2623 337153.2299 337153.2299 126272.0329 303553.6227 149267.5113 1680348.9572 418939.4904 239219.1485 215545.1453 121745.5874 138473.6745 180533.8054 446137.4896 284880.8319 221352.6428 124474.5121 194480.7544 186689.1807 221913.4577 711699.066 365183495 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4750.8205 4921.2311 14228.2912 5357.6407 118302.3489 6042.9383 4536.6432 2266.0356 2266.0356 7091.3448 5170.3769 2555.139 7437.4734 4698.4313 5091.9816 2906.3512 5418.076 338804410 terc Metal Homeostasis Tellurium Detoxification Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 21367.3403 13673.7274 17678.8552 17926.3347 12404.1598 4583.6433 17374.0537 18280.8932 6057.8408 18719.1687 109496.737 22711.2619 370216.8573 27599.9565 18125.0604 46402.1088 11869.3021 11869.3021 12805.4393 32265.5388 24222.2098 25169.0749 126618.5491 43193.7479 10261.9154 14286.4409 20743.4776 15488.3985 62721.5142 29055.8002 25815.8258 13484.5682 16866.0109 13285.9107 11254.9156 27068.1266 331022037 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 39135.904 54810.325 22291.2318 16884.6563 28104.1043 21483.4 8988.0811 12314.9819 25624.4931 63814.0785 236413.8079 45661.9847 25797.3996 15807.8192 24374.0418 24374.0418 17801.695 37095.7829 17480.7746 28518.2782 120426.6219 37829.7966 16937.9315 19926.6309 40210.4214 20817.2511 70142.049 89939.6475 35041.58 9330.4764 25891.017 29826.3061 20668.5725 31752.5252 325051677 arsc Metal Homeostasis Arsenic Detoxification Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 5521.9641 8568.7203 23567.7771 6949.8311 5366.1354 387936669 norb Nitrogen Denitrification NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8661.9885 46955.1313 4271.5503 6388.9521 4649.5702 6663.8203 2571.5318 2736.8291 374709706 amyA Carbon Cycling Carbon degradation Starch Sporolactobacillus inulinus CASD superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 20508.4982 15243.5455 10760.557 15285.4919 13093.8649 14231.5579 11865.5836 7774.7454 15148.7697 17161.1423 9700.8172 465268.3156 18842.627 12837.1193 8031.4985 8019.8374 8019.8374 10117.8666 24249.2179 15404.9459 18002.6661 19360.6868 20421.0027 8180.2923 10449.9995 24000.0198 9495.0183 28603.1234 15793.0523 19065.9286 7294.6645 20967.3902 11566.6755 14616.3159 21652.9073 407275466 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 98467.8858 42956.7827 16071.6736 12883.3776 30677.4893 25749.8326 410972.0596 21268.004 23992.2208 24964.6988 36563.0546 28517.3393 507383.8673 74598.6193 33511.3348 40978.7219 33357.5128 33357.5128 13301.4878 50677.5948 18262.6542 12095.704 19423.0654 136129.3367 11349.6763 19665.9222 185808.4178 39699.6254 305499.6516 20989.4711 28777.2316 16332.0185 77918.2728 34962.8751 17888.3537 13299.7866 302885394 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 11610.1861 7897.0231 12257.3205 19966.354 5009.1279 6597.9126 6279.2098 4569.9696 8883.5562 12647.76 7742.1644 193636.6604 11254.6513 11939.3112 6963.9625 6464.0537 6464.0537 6702.8621 15515.9531 14655.8773 13293.0179 10539.6513 12970.0967 5525.4617 4992.3511 16308.9137 4751.9406 20464.9876 11061.0951 16626.8484 5641.275 7697.7509 7437.2395 5499.7487 12804.2611 328544315 SoxA Sulfur Sulfur Oxidation NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 6868.4809 7405.3524 2768.9612 6057.846 4723.2885 528875.0952 4434.1371 4689.1673 3966.7224 3966.7224 5090.6154 8858.5255 11288.7017 7203.5561 11006.455 5147.2351 2839.7136 4939.2722 16670.4349 13975.5905 9490.6666 3725.3769 12657.1143 3937.3828 9187.2336 71736676 ppk Phosphorus Polyphosphate synthesis NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 4955.2314 9986.8953 9613.0584 2328.8193 5083.8337 1993.6726 283941.394 6355.8468 4697.8312 91539.3284 8010.2011 6993.5269 10054.7838 4078.3658 4078.3658 3364.885 18417.1394 6822.8391 11062.356 12066.4761 4572.0321 5395.2316 4559.3018 9873.9404 25881.4131 9251.8013 8305.6175 10760.1045 3895.765 4604.3375 7218.3209 4899.9102 10367.2173 156446925 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5725.7826 7348.4874 4452.3309 3801.4482 3128.1761 6671.7654 7253.9326 3151.9697 208684.5544 5328.7379 5766.9368 3308.0666 3308.0666 4005.1182 9796.6016 6338.2573 6600.9649 8425.6242 8958.5772 4690.2017 4064.7327 8492.8751 3059.8855 12856.4712 10146.5708 3998.6536 4989.96 5962.2786 3529.961 9055.5761 326197577 limeh Carbon Cycling Carbon degradation Terpenes Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 8034.1908 6064.5647 3433.8324 6907.6848 5578.2143 6484.5831 8117.6667 8368.1596 87660.5255 6436.123 7839.3319 43488.1362 6117.3301 6117.3301 8080.9162 12057.7424 9310.9818 14182.4189 13854.1961 10415.7909 4781.044 4944.0279 8897.8622 6547.2173 16169.3575 13088.348 12222.5419 5316.4117 8013.9174 5308.7137 6323.3057 19482.9495 78061637 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 20547.184 5720.3289 8605.1725 39888.6626 21250.9152 11235.4621 12123.7015 98009.6548 9296.5309 11670.5923 120681.3544 9926.6619 10689.5907 28001.7921 8766.5682 8766.5682 9219.1579 18610.6891 10898.7509 12990.1876 17236.8713 18887.7584 9503.7357 28611.2649 11579.2424 26198.8635 36461.1965 11379.9024 23909.7599 6448.1241 14197.2751 8344.482 6989.1712 14105.9924 337276055 nifh Nitrogen Nitrogen fixation NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 150779.3353 23090.9059 7654.5299 17961.4563 50070.485 64637.2575 8313.3133 35333.6065 7387.1431 372055.8288 21312.2455 15690.8552 13774.3054 8626.5698 8626.5698 4828.2979 20086.3282 8431.7989 10160.9259 10732.6514 11092.5547 9067.3245 14246.2981 9495.3573 6401.3646 24765.0091 19059.5316 31096.7782 5262.2933 5564.3455 23465.0609 10756.4295 16228.8426 27382714 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 103474.176 5590.055 17145.1395 4690.6861 4433.9097 83514.3752 15419.5457 21718.4992 35386.9894 127509.0014 210093.7643 17127.5725 28554.7671 12005.4286 12005.4286 6787.2489 22285.3541 6932.9785 11890.9689 28699.5486 12673.1433 4516.4397 38668.9697 40419.2479 9871.2219 25502.4472 14174.4933 20229.9421 10082.2579 15700.7222 14092.5959 6228.573 14818.0951 109457402 nirb Nitrogen Assimilatory N reduction NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 6433.4686 13442.4291 2041.9229 3597.9702 7049.84 143778.763 4016.1357 7565.8878 3824.1256 3824.1256 3559.7969 6688.6497 6325.0553 3052.0582 7820.6788 5073.5756 5067.3142 7841.4217 3265.5145 3807.841 14107.7537 338209654 nosz Nitrogen Denitrification NA Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 13506.0561 7594 8550.0105 7666.2898 7975.4486 9955.2533 115008.4229 5367.4088 296242.039 15431.668 8846.3979 13445.3186 5538.9066 5538.9066 11709.4693 16910.9464 15220.8196 12958.9348 36226.6787 23000.4529 7547.3895 10176.612 14368.7209 7770.4257 23937.5618 21664.8031 20847.6895 6843.6372 9927.4791 11696.6835 6831.4972 20402.5946 114541038 PRI Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 5107.9164 5256.5143 2043.2905 2476.4373 4571.2118 6640.3625 4394.5587 56520.6134 4528.8412 24258.4207 3997.0669 7661.1044 4521.8979 5878.3652 3028.5527 3174.738 7698.8793 3836.8543 11468.3898 4530.3075 6475.9117 1858.4081 4301.0078 3702.7685 3199.2904 291308800 cysI Sulfur Other NA Neisseria elongata subsp. glycolytica ATCC 29315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 81617.66 30784.6307 43151.3208 78483.65565 35875.14595 37984.5941 63060.82215 51148.6991 45997.08485 90119.76785 52170.5117 52170.5117 37958.16035 55865.5337 43753.83785 71372.0584 46524.0086 98570.236 37869.9854 61704.246 63704.8642 167106.1815 75905.5652 91709.4952 47636.88905 39795.7827 66769.53445 44680.27905 332171966 cysI Sulfur Other NA Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 27594.0822 9750.5824 15025.9246 10617.7383 11806.8023 67301.7846 17501.1056 19146.4294 358613.051 34801.9221 20154.3742 12447.8497 12447.8497 8303.0896 19324.16985 18856.4838 10364.6602 8271.25845 20116.6171 9751.9412 7986.8836 10064.7707 22654.3204 312197916 xylj Organic Remediation Aromatics BTEX and related aromatics Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 22204.0774 10213.7925 11669.517 10354.6521 56453.1057 4822.4927 41222.999 11884.5113 16361.166 106953.221 10695.3129 8809.352 19976.0863 10805.423 10805.423 4525.5413 18574.6346 10463.9348 16257.1168 21566.6736 13143.9646 6225.5122 7267.691 11254.6544 7727.6759 30869.0269 13741.2117 10104.7706 9464.9404 9251.5041 18273.4406 7340.7999 13015.0998 268317366 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 9690.5842 9018.5752 8586.585 15434.7363 4844.4645 16461.3362 17315.7615 12796.7579 10226.3827 9312.7371 68519.7058 274541.9934 12624.2724 11535.7542 9943.6002 8476.5722 8476.5722 5167.205 32576.0673 9812.8222 9376.8042 25936.2205 15978.0593 8461.6577 8577.1286 18169.78 5984.9863 40900.0549 13352.3538 17740.9952 13063.0038 9750.4577 10825.5877 6899.4974 16151.8871 162455881 cysI Sulfur Other NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 27640.7832 2150.569 19841.1613 5418.85 10130.6958 6589.9474 5642.312 69864.7872 3772.4759 4998.3236 4602.2404 6493.962 6493.962 8018.3252 3399.7563 4719.6771 2627.4983 3629.3457 15356.1198 5821.3655 11597.4615 5101.4904 6047.5551 3629.2248 4907.1728 332592235 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 49612.8641 24324.9809 15580.0941 16716.6836 18944.6527 23729.5737 23296.849 36848.2943 38856.6507 45523.4007 57716.3815 459548.0921 98230.1766 44346.5219 46238.3477 61750.1642 61750.1642 20108.5468 38178.9809 28558.8544 26932.3731 38348.5251 22721.5318 23437.4364 24407.4148 29006.8185 21319.9436 33274.4192 57675.9587 30142.4597 24801.539 13990.3007 54036.6662 27217.1783 30250.1391 63081886 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 4818.5114 33107.8193 4218.5316 19024.8467 7917.2206 6773.4324 6336.4054 6336.4054 5158.5744 5270.3565 21416.7906 5131.0415 4709.3816 17326.5775 7458.0809 7678.3102 6189.5526 1982.7843 151302179 APS_AprB Sulfur adenylylsulfate reductase NA Desulfocaldus sp. Hobo superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;genus:Desulfocaldus; 23039.1727 11199.4521 20811.8476 24374.5472 18564.3599 11290.3861 10541.7057 10968.2148 44200.5108 15853.6086 10846.0469 5033518.7707 12497.9537 27982.3016 77588.1452 19601.8178 19601.8178 11623.2962 24809.0902 14033.4214 15294.2772 29945.7518 21944.4403 10443.7326 11599.5337 17988.698 20964.8519 80643.7884 12891.0186 21727.4176 9054.6436 11743.7622 60503.0198 11569.1675 18870.7951 357589288 bphd Organic Remediation Aromatics Polycyclic aromatics Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 113500.7481 12036.1056 11800.3403 10116.6963 4270.4019 51854.4247 7081.9946 10347.568 6701.2867 4561.8394 196499.6959 19642.4486 48851.9241 9272.6293 5644.5622 5644.5622 7670.1754 23684.244 9067.9688 11459.8728 20171.6411 8316.3372 6948.0224 8137.1828 18448.4741 5969.9836 22352.6616 12495.3547 16462.9837 7888.1155 6580.2982 8066.5423 3856.6115 11054.2534 21223889 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 433135.9942 271197.0137 315836.6291 166919.2783 145019.7968 50503.5729 126763.846 200154.6426 67894.4538 107835.5909 115160.1638 103887.0328 1964645.0719 134833.0626 143715.4371 126204.0368 119444.3236 119444.3236 338896.8548 147505.7975 96019.9796 186730.0814 220236.6671 173668.9169 95829.1633 131448.5801 123562.1612 89050.218 223574.4942 77076.7157 142710.9128 62449.0423 208563.2921 225336.0057 102936.6726 208629.7278 159890721 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 11973.2778 7559.2692 5291.3474 8578.7752 3494.4869 7346.7732 8077.0082 6645.1814 234624.4628 10540.6481 11142.4215 6394.5588 2594.178 2594.178 8010.1166 18392.298 13183.5143 7757.7253 11251.9013 10109.4164 30681.332 6982.2024 15257.9086 4605.5735 101680.1767 14335.2706 16532.7067 3360.5563 6202.2224 10563.0048 5116.495 17627.8704 209401814 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5641.9321 6479.447 4624.8993 19711.5838 10184.7684 6464.733 4892.9636 4999.1076 8021.6177 7974.6385 2783.4326 110916.5825 11260.235 7817.4118 9801.8414 4041.3984 4041.3984 3697.8756 11693.2772 70979.1422 6256.6509 5687.4439 6847.4272 5072.5938 6053.2758 14418.4525 4998.2182 38130.1532 6894.149 9949.1189 5780.4613 5361.077 14721.2224 4045.4998 11856.5938 229829049 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 11707.5054 9204.5888 9686.1242 17034.1471 3988.5626 6065.7223 6097.375 6873.3606 9944.1038 4969.4877 177706.3029 8148.1618 14384.9515 6908.6232 5020.0203 5020.0203 6230.6644 16248.618 9273.2252 9972.8034 9507.5207 4858.5025 6239.1434 5067.5605 18255.3709 6316.8241 26525.8971 10077.9552 14078.7241 4827.812 6821.967 11129.557 5888.2175 15497.1004 374986455 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 29229.3219 67690.9609 4748.8611 78930.144 95872.0441 29396.5145 8989.4618 15222.8761 19582.6265 402437.1029 20030.5348 44895.9881 72781.0717 13697.6079 13697.6079 20188.8658 28959.3904 9938.5616 17956.4334 44512.6045 7724.0039 24116.1316 13566.8617 16117.3218 23250.4263 23942.3309 25898.4416 18395.6426 11146.1554 14065.8894 25533.0435 16864.7669 41370.8649 163791449 amyA Carbon Cycling Carbon degradation Starch Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 5385.2755 275650.7369 4823.1893 8329.257 2743.68 5103.27 6239.7906 5887.5335 2868.6938 134514.4439 130009.5492 4231.3236 5258.9764 2591.4751 2591.4751 6711.6617 11878.3743 6699.0063 13357.256 8220.5114 6161.383 3281.2774 4175.7587 10210.7972 3217.1098 15032.7231 6901.4248 7315.0151 4171.2415 4301.9218 4542.8651 3623.4855 11288.2233 297163592 ara Carbon Cycling Carbon degradation Hemicellulose Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 9180.0757 5778.8179 9465.6828 5462.8818 4682.6085 2635.4256 4925.2889 8197.2268 8465.4829 6970.2536 10495.2593 6291.6628 6291.6628 8026.7312 6358.5358 6512.463 27358.7095 2830.9337 5116.2009 10166.3362 10983.0454 14298.9782 36555.9676 6612.802 4076.8037 8031.2616 364570977 cda Carbon Cycling Carbon degradation Starch Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 8050.4663 14655.84355 6812.5488 3388.8509 3779.2837 3158.182 10213.5958 4446.7044 2709.8163 102550.5237 5425.1768 5131.7744 7424.7228 3370.9981 3370.9981 4347.7264 9235.56775 7678.7504 6133.26975 6949.535 5781.5872 2919.4222 3615.1937 10537.3955 4014.49465 26745.3572 8536.9487 7242.1335 4358.14705 4410.37445 3903.5357 3467.13465 8621.7096 365337848 aln Organic Remediation Others NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5625.304 5750.0201 9033.1631 7009.0166 10956.6944 8609.548 6305.0595 7586.5973 11460.5773 11850.2703 69735.5433 7449.8117 6352.6009 5391.5114 5391.5114 3042.9148 9693.5779 20165.5882 3576.7135 7143.2279 3724.9494 19303.2379 4937.4104 7759.276 11319.998 66634.6107 53663.7907 8259.2138 6575.2911 7909.308 10146.4746 11231.4373 8028.4274 336004429 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 10889.6023 9236.9673 15750.6623 9096.5576 7184.6256 5169.1171 5915.0285 20504.3587 126612.6562 7713.0349 8051.4517 19324.579 8883.2882 8883.2882 5653.3544 8268.1271 17141.5766 6518.6058 18341.4758 2879.4183 12351.3953 6044.8119 4385.048 4598.0936 14893.9433 7393.4666 2901.0281 5445.8562 20183.1815 22434.7619 31186.5938 388433520 B_lactamase_A Virulence Antibiotic resistance Degradation Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 10180.7673 54215.497 7014.3969 12480.5945 4803.7731 4184.1974 5924.4394 9658.088 8405.6654 5546.0484 5560.675 215622.7817 24849.0927 10981.6843 7347.2953 10295.6746 10295.6746 5136.1073 13130.9509 6699.9121 10869.9639 8725.8304 11476.9341 6260.6873 12323.6242 11877.4609 5642.2624 25173.4893 6039.9983 12446.0056 5427.7614 4869.6843 6882.7699 5311.7501 17951.3326 198267318 atzb Organic Remediation Herbicides related compound NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 18378.1528 150625.279 18387.4284 21782.0991 45811.8964 23480.7423 13019.8427 14778.0151 8031.2034 20510.9073 18103.7978 10538.7912 632345.2236 15994.8741 20791.2125 32447.4612 30799.6345 30799.6345 10911.222 39566.3999 19190.9466 14113.8131 56787.5444 11064.1961 8259.8883 10804.9649 33379.353 8849.52 49999.2715 20373.6093 31830.7144 14077.0459 16867.1958 19261.7175 10941.1926 29939.8578 117928580 amyA Carbon Cycling Carbon degradation Starch Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 19026.9756 40663.4467 11858.2172 16793.3807 7512.0759 7289.8732 19357.3325 17757.9459 11658.087 16832.5663 21630.1794 837648.0832 9495.5496 20851.0951 23786.1917 36392.859 36392.859 39908.795 29719.464 20272.0815 62677.4437 26338.2781 17190.6394 9097.5588 19249.795 75421.3907 41168.9422 64511.5139 26344.7312 27881.0392 4944.077 28238.8599 103845.6716 15350.5758 12842.524 328919117 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 43274.3367 15416.7327 30036.3135 55141.1907 39247.5313 33254.5174 35367.0573 188539.0061 44003.5671 113661.1596 39783.8051 46522.0858 4981742.9122 52082.1818 63985.0457 58979.5667 54790.2761 54790.2761 31924.3467 55183.6234 45284.8867 108350.4198 54322.2602 49096.3419 66778.3352 29667.615 48163.4021 21281.6576 231558.9335 52407.5394 209194.9282 23486.6143 49792.6159 48573.9745 21584.038 44404.7584 38232603 urec Nitrogen Ammonification NA Yersinia intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 9190.2136 17196.6547 7332.4035 42896.2624 4851.1112 4492.71 136426.0032 16141.3975 228389.1497 7698.6505 6533.088 11614.9544 19674.7384 19674.7384 10430.087 7447.8708 5578.7945 8250.1371 5732.1993 3416.1079 14221.8439 6940.059 4012.9405 17134.1887 19642.2963 15738.5543 3975.5948 4788.8141 25086.2595 4148.0767 25687.365 33333865 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium sp. S65 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 26157.5062 6485.0049 25229.5975 6692.3991 12238.2752 6325.5045 11562.9433 10646.1282 8789.2744 309691.9967 124293.5898 12132.7862 13214.293 7223.5054 7223.5054 7635.0566 20083.7441 12202.9519 10060.1395 14853.3807 9396.6002 44173.4804 11449.1364 12666.5706 6354.5393 41773.092 12306.645 16929.9273 7838.7022 12767.1691 11695.6453 6756.2171 12068.3461 29338098 xyla Carbon Cycling Carbon degradation Hemicellulose Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 13894.8472 128845.1002 5325.2044 17001.0478 8571.1295 7367.2572 4883.0331 296824.8216 5087.6837 16122.5501 42730.4264 14654.3343 14654.3343 3852.1815 18018.4007 5714.991 6656.3194 8356.7358 9168.8799 4671.648 5734.9233 37809.4243 7955.0704 18178.5081 10305.51 8875.4125 3989.6025 6143.7309 7680.7473 4698.5918 8572.7728 355679257 amyA Carbon Cycling Carbon degradation Starch Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 5784.6352 6447.1381 3017.353 2467.9766 3864.6811 3763.9408 93168.8343 5234.4767 3572.3237 3279.3354 6852.7644 7018.4575 6077.5617 6037.2188 6817.2453 2587.3267 3362.4807 6123.6102 8960.3905 4619.4183 6161.7305 2335.952 3050.7039 3871.9578 2183.5138 7683.6201 313104973 dsrB Sulfur sulfite reduction NA uncultured prokaryote 33912.1497 9052.6181 9042.1086 16096.6034 3326.8692 3795.2128 11114.7572 6199.7156 85409.3412 16985.5897 7623.8832 7372.2905 3958.9341 3958.9341 13225.0425 7647.4739 10491.4809 15096.3141 3438.0885 18544.9818 17610.7373 13426.5677 19504.7555 7110.8392 11405.131 4850.783 4757.589 8834.8781 4700.1828 15182.3805 60476298 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 37130.3422 22098.8825 203349.596 79644.3646 30274.9664 74108.6289 234600.8235 24751.6224 41678.2475 35092.6122 66846.9207 1041072.6378 137479.3982 75551.8656 123248.2313 68879.212 68879.212 35380.1066 337444.2119 38133.2699 46767.8911 57846.821 54501.3255 24428.0342 37656.0751 47801.3401 40551.2252 119026.8683 38125.7903 62526.7401 42610.0814 35485.7318 42277.495 24592.3931 53865.3163 306516843 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6991.7093 11729.3355 2729.0719 1920.6739 5017.7996 301239.9721 4497.674 2287.9262 2287.9262 5433.3963 5845.6296 7376.9479 3777.4025 6912.6804 2266.1631 56751.0256 8554.3984 3268.3252 4139.6573 3453.8778 2532.1564 20090848 amyA Carbon Cycling Carbon degradation Starch Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 200277.1615 88786671 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8402.318 12972.5525 7114.7577 26752.218 48665.2174 5624.8936 4939.4601 27250.5518 3291.4559 117004.1921 36133.8451 14343.2448 6704888.5198 25055.9464 13078.5248 9585.0144 6613.9959 6613.9959 6470.489 24497.9304 21935.5529 8197.4563 60010.228 11587.3954 4578.7567 13778.7646 13004.1445 9288.961 40909.6483 24495.6423 27401.0562 4452.9878 28839.4766 31207.0234 3000.2642 14141.1615 222543467 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 7040.8574 14346.0316 6049.2567 2772.2472 15809.7642 5196.6016 8804.9888 3820.6324 97178.2099 5061.6482 48816.4751 4513.4513 6816.5017 6816.5017 4561.761 12120.8873 5276.2558 4663.5426 4725.6055 6819.7128 2532.7696 4111.0337 17410.4949 2287.1787 9418.6424 10224.1824 4069.4269 7371.5518 7636.4327 27758.01 34822.8019 289528936 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermoanaerobacter italicus Ab9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter italicus; 146127.3321 8992.6009 1523717.9122 10011.8464 5304.1205 12159.6122 297496.1484 7726.4177 23148.8697 18691.9502 11261.8244 509606.5933 19483.7367 24256.443 14383.2787 9819.572 9819.572 10336.5991 19748.1365 14413.0031 47976.1485 47508.4652 31200.5595 102984.1229 14287.8888 547068.124 172644.0544 29053.2273 213317.8365 18756.6441 9945.3924 11323.5201 13122.6666 436188.7319 159142.783 319996307 amyA Carbon Cycling Carbon degradation Starch Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 24908.9421 429631.7941 39570.3749 14217.3039 10832.4401 5763.048 73767.4684 28376.8422 10280.0846 11439.6344 15786.6991 344543.2401 15024.2155 46624.4549 22526.3815 18069.3036 18069.3036 11127.9804 69437.0093 9555.8403 55913.0777 56804.838 4855.2622 19219.4318 31885.6497 20458.2939 26328.6977 39605.0865 20666.6627 21402.2652 18707.9897 32858.2977 22698.5714 13136.6143 9906.8607 146276087 amyA Carbon Cycling Carbon degradation Starch Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 11822.132 4547.8644 9657.9753 4340.7755 3890.2022 2762.5701 6116.4535 5992.0016 9831.3446 4624.2719 14213.6989 6850.1917 6806.6498 6806.6498 4350.179 11449.6968 4887.3255 6857.7246 6467.9182 6054.707 2930.0187 14128.2517 7252.8144 16149.5188 4798.2244 7691.7915 2721.7384 4397.8165 4680.574 4130.6767 9570.3326 114315149 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 6745.5311 7682.6084 11163.864 3227.4367 3492.5516 2301.2434 19605.1694 6672.914 2969.1477 181446.3781 5210.4043 7740.5493 7758.0765 7758.0765 10486.5177 10351.5655 9627.7553 6746.9474 7732.6184 6341.4457 5496.1137 4083.7666 12833.426 2634.0319 11489.4345 8246.4141 9643.6698 4152.5394 6021.387 7385.0297 4209.5161 10885.8217 91795567 vana Carbon Cycling Carbon degradation Vanillin/Lignin Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 49939.8323 10858.393 16928.3858 2818.4646 4739.3196 8485.356 4855.9099 94326.5486 5367.0313 16040.145 6450.8953 8054.0174 8054.0174 6634.4171 10529.4623 7924.6566 13736.342 6177.4761 19552.2411 3963.0672 8288.7218 10208.221 9542.7197 27929.2418 4308.9352 10221.5484 2545.358 4934.9684 10231.9974 5801.6553 4675.256 302893669 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 5374.8874 4775.6398 5220.1173 2099.5404 3329.3283 4758.4581 5431.5928 4369.1921 3975.9809 61530.6765 11336.5582 5548.3541 5700.5893 5700.5893 4528.7509 12757.5965 5074.4207 3748.9869 5803.6543 4091.6649 3264.636 5695.9602 11821.7069 5889.2925 9729.1782 3502.4037 3624.0651 6423.4279 3771.6914 11296.8036 124004655 alkb Organic Remediation Other Hydrocarbons NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 10819.6095 6098.6318 32552.1628 4351.5067 5329.3606 3849.0823 7454.1882 5684.8943 4454.7613 172429.8988 10467.4675 7184.4255 4443.5469 4443.5469 6359.0363 13428.5445 6332.3583 10111.657 5883.8473 11923.6232 4446.4819 4160.0814 17887.1546 4097.9777 6385.6751 6595.0156 12683.3659 4635.1628 6601.8451 8258.0207 5235.0699 13694.3463 145228347 ara Carbon Cycling Carbon degradation Hemicellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 12413.2739 1136304.0791 78568.3617 14422.1281 8726.6758 23888.117 4749.4276 4445.6463 20001.6506 18874.5898 5040.3719 134713.7963 6158.5031 12217.6919 8790.379 5949.3252 5949.3252 3336.3819 9477.4915 10934.4692 5278.7668 12178.2414 4936.0405 4498.5461 4808.8848 9817.6712 4192.2403 26394.7975 8703.2538 8650.7081 5502.4118 7417.3703 7354.2269 4354.7269 9164.897 8517646 soxY Sulfur Sulfur Oxidation NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 25560.8057 11529.1461 16977.8267 119680.7903 12482.8944 9938.1396 18219.654 8174.3237 26453.7797 74675.7937 61781.7219 400793.8664 26039.0696 47139.9841 27261.0133 161816.6145 161816.6145 13876.1023 22063.3009 12156.5407 11570.6032 27559.2098 5881.4111 14827.1294 28653.2146 91514.9262 10481.2737 37102.5334 24853.7238 32468.747 11102.7683 18461.792 18957.6005 9667.0269 11827.0388 164427228 endochitinase Carbon Cycling Carbon degradation Chitin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 71597.9347 18809.9963 10711.75 39204.6461 16261.3375 10235.1819 14810.8601 12863.0259 17894.9591 44132.4654 31336.3402 614917.6976 29958.1663 26511.8602 22175.7604 21863.7555 21863.7555 19884.2501 47793.8149 23182.972 44810.8832 24221.2821 16772.3839 12207.6144 20348.1284 53532.011 11915.7516 54029.8846 30878.0612 37308.844 13426.9352 32031.1332 23022.4909 12975.6716 28195.0932 407057075 alkk Organic Remediation Others NA Oceaniovalibus guishaninsula JLT2003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceaniovalibus;species:Oceaniovalibus guishaninsula; 15633.8609 13825.8765 11981.102 5835.3455 64242.2569 9260.029 12432.4388 11504.5517 30534.7421 19102.0624 179661.6323 15562.5593 13107.1965 14532.6201 11907.2159 11907.2159 10642.3614 93843.8941 14540.812 14828.5801 19699.5274 227855.7912 10131.1497 15694.5106 21662.3126 14782.2711 33254.6304 22007.1171 432089.4933 26558.1327 15639.1576 15291.2054 22806.8168 25135.3622 261286280 endochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1034344.7099 6893.562 4557.3247 11749.0586 11090.2791 6857.3361 159448.2528 8147.4649 23021.7663 20786.9773 30649.4137 265466.8998 22619.7254 321935.5731 21641.7614 44961.6868 44961.6868 11072.3499 28853.9706 17955.4799 13210.3912 19150.7213 14103.3934 8176.7419 43359.6934 18348.9952 96860.3414 539685.6172 16602.4084 34047.5023 83921.9194 18599.6921 16258.1385 29943.7097 100410.2957 294365 poba Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9930.8989 9635.7666 3256.74 5009.8407 8717.8715 5811.1256 76450.2961 9884.2384 12266.3489 3979.9836 3979.9836 18460.4601 5446.2469 5614.9231 14860.5224 3769.1764 2490.7935 3701.1143 12063.166 3197.8832 11753.6924 7642.0478 13182.5816 2535.1953 4418.9012 5996.2693 27350592 hbh Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 21300.7495 9907.4426 22263.3232 46686.4233 18953.9004 12908.2761 13862.0608 7274.0945 21550.9414 20680.9936 22845.2015 384019.7919 23825.9176 61501.3548 48287.6976 20157.34 20157.34 20279.2918 32732.9593 17529.5451 17493.2769 19123.5811 37524.0784 9525.2129 12243.0112 26168.3411 41563.741 38248.5411 32012.8335 27964.4358 11771.914 17962.6136 28843.5125 12791.2305 118457.5685 357590678 bend Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 64839.9426 22710.7176 13474.1624 12420.2597 290992.4275 38239.176 17650.6873 20908.0395 11488.5419 14471.7832 40595.4278 27324.7852 1291404.07 54005.3092 45221.8644 64752.4134 49559.5474 49559.5474 31793.3795 40731.6391 91997.606 16799.0777 28865.8948 27851.0193 11465.0218 24514.51 52609.1102 29567.4578 81475.5436 31675.4589 24939.2051 24955.0897 21485.9098 51482.1383 10903.1656 16450.6393 296426624 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4825.4862 4410.1453 7124.0374 10731.3329 5463.6457 2473.2029 99816.5063 6281.0022 7023.8224 13970.5726 33784.7715 33784.7715 6168.985 16054.5551 10230.743 8804.0403 6009.54 9902.4458 4094.606 4777.7552 14856.4619 6364.1082 19498.1715 9142.1285 10582.7769 6867.6454 6254.999 6752.6164 15504.9785 6941.9246 329575187 phytase Phosphorus Phytic acid hydrolysis NA Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 7637.7972 3695.734 4392.7344 3332.558 3822.2867 8530.5486 2292.0798 1763.8291 387163336 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas fluorescens A506 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9252.7656 2854.2337 3410.8558 4038.6111 51929.4891 6553.126 5692.6645 2161.2151 12820.2893 18578.833 27684.3108 2240.1081 359782745 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 4093.4441 4196.5697 3556.3195 8377.2267 4414.552 5088.8444 5088.8444 6430.8384 3020.2262 15445.9393 3838.5406 5707.4818 4281.9904 3360.3979 228766198 amyA Carbon Cycling Carbon degradation Starch Bacillus pseudomycoides DSM 12442 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudomycoides; 16262.2922 7550.4699 7707.5293 8179.2274 10906.0927 8227.2469 10351.415 9645.8393 11109.0823 9211.2517 11371.6984 157875.5477 8694.0314 15532.4358 16276.7478 8635.2524 8635.2524 6745.05 18665.7395 12670.09 172589.37 25020.6532 24350.0434 15543.5963 9516.1708 11212.7736 10365.0283 39189.5539 16380.9449 17886.9174 6516.8725 10624.1662 10339.9537 6225.0114 16140.7115 84377495 chitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 5626.4403 4880.7666 2079.3754 2481.5781 3527.2597 3678.6329 2482.2344 116127.1793 5460.0287 4602.4844 2188.3194 2188.3194 3238.1696 10198.2313 7289.1492 5610.0338 11274.0546 6166.0371 4121.3763 3401.6119 7048.169 3036.129 17268.1534 4383.1821 7564.0785 2594.8893 4263.488 3804.009 2335.4242 7832.9826 120596609 phtb Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5768.7666 11665.8569 12206.1891 6271.4691 3066.1557 6621.706 3690.0151 10095.1282 24613.3428 22714.5839 322771.9451 9190.7489 7041.0902 4241.1173 4241.1173 5807.8194 21703.2585 11634.3938 9236.1902 10304.1261 7837.0842 4863.436 7435.996 15290.4428 20734.9432 28858.4793 10091.8431 21348.5786 5155.935 12051.0194 10330.6371 30313.1615 12892.0042 88702619 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 39979.4981 23987.4009 5960.5386 10006.2769 6922.4037 33887.2117 10535.9556 8148.5184 6460.0156 30595.866 412899.7733 38670.5883 42174.1958 64853.7883 30018.9071 30018.9071 11670.947 51085.5388 10442.9097 41326.144 15293.5203 41581.7104 13458.4764 18466.8857 23859.886 61864.9283 68643.4384 19296.339 57468.0667 12745.2539 32796.784 293074.1604 9216.0126 314462.9734 61220992 tfth Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. PNP4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 29001.189 4616.2331 7355.5536 9250.906 4059.1363 3159.9523 69553.3143 8364.7144 12875.2195 7248.3159 4087.4159 7248.8979 4144.5768 6300.6288 18373.6755 4783.7129 3944.6205 2271.179 308226902 FBPase Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 14607.99 3285.6178 2141.8552 3061.4939 5064.8659 189367.0302 4295.7764 8216.0153 8216.0153 4382.0771 4449.8744 2019.5908 6778.9521 8570.0503 6218.532 8410.8911 4735.6192 7484.4641 2787.1586 8639.9858 118164429 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 17365.4058 9154.6624 10454.0631 14020.3171 5793.4492 8561.0795 4882.7742 52097.5456 11934.1085 13329.9535 5491.4007 190649.8958 10222.1693 9072.8268 23123.031 7602.5988 7602.5988 6078.7961 14461.3332 8401.3239 9324.7693 9027.8676 7085.8174 4540.3984 12963.7342 9646.3879 12539.5496 61800.9402 14365.7638 14265.7399 3732.4003 8451.8698 5870.3399 5306.3733 10739.7535 170079020 ppk Phosphorus Polyphosphate synthesis NA Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 13422.9306 88763.7643 18562.7121 7676.4728 5911.6176 12295.7738 9673.3873 5628.6824 10557.311 18437.7557 10607.9853 252221.3794 32177.9826 15476.5937 9722.2247 7246.5546 7246.5546 10348.2319 19253.1198 16242.5564 31460.959 17588.6124 17205.3216 5328.4292 7691.0745 62012.9559 6667.0101 23522.5629 18237.7402 18218.6257 5163.4659 7334.0852 13851.0614 6044.4182 18420.8397 395006438 B_lactamase_A Virulence Antibiotic resistance Degradation Acidovorax sp. CF316 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 20786.0818 1562402.9667 375250.1507 16513.8705 71294.4158 9476.2186 8966.8504 57823.9465 9347.0091 15396.0203 56149.9522 55069.1346 798927.9589 49920.434 26074.9594 30921.4774 70074.4831 70074.4831 26494.043 28200.022 15009.0223 230554.8433 29136.5591 11480.7533 19285.4853 6981.5533 26623.0358 16331.0926 88401.9034 35685.4848 23207.3315 32342.9159 25036.6844 22122.292 31564.7597 16329.0347 306982973 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6223.6484 14472.0006 5972.7016 3916.9011 3578.9606 26950.2989 49121.1517 8415.902 5201.5894 189110.8275 7474.8908 3590.6524 5559.2275 3287.9017 3287.9017 5515.8294 14597.2599 9143.8507 5764.9592 21548.3455 14002.0888 4386.7122 6844.7121 10434.7798 8229.8056 16417.9929 7017.3761 9933.9255 3080.8915 7150.7507 7563.8582 3349.2628 10630.638 323494096 urec Nitrogen Ammonification NA Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 5222.8 2593.1541 3653.8573 2631.0028 6334.8111 4710.0849 3373.8245 132846.8243 7171.7298 8977.1711 3563.572 10372.0193 6432.0846 8831.4109 8053.1533 10079.6601 2868.5139 3652.0921 10029.6474 3935.3109 10880.9277 6763.7165 9241.4089 4608.7188 4617.6042 4994.7214 3119.2204 9378.1172 196251310 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium thermocellum DSM 4150 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 5625.7335 13399.0526 9620.7579 27093.8365 4189.2133 2914.8887 10722.0495 6951.712 5301.6434 10389.2277 7048.7292 78027.8625 5021.3143 7383.4483 8291.121 7044.1631 7044.1631 3282.7807 11270.8087 7558.9811 6327.7839 4870.9071 12197.3946 9417.8761 5165.8809 11053.1524 3680.7288 13884.6995 5861.9392 12722.8896 8954.2366 5686.191 6447.575 6462.9983 27175.8468 242799769 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 93790.0862 8812.7383 6695.2691 3629.8507 4798.9678 2823.3655 4193.6904 6492.347 5596.7496 6817.0307 37051.0803 8134.3356 3991.1236 3444.4472 3444.4472 3753.7519 8416.5497 7586.9886 5754.0966 8145.1498 10407.8378 4298.9111 3319.8134 36841.9079 2996.0882 16208.704 6426.357 10371.3341 3928.987 4593.7722 7234.0162 4375.8946 9357.6961 401676417 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Enterobacter sp. SST3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 81529.6522 37469.3181 42725.6832 52116.3535 19502.179 8841.7532 105822.5384 5609.1848 20037.2034 53232.2855 35652.7019 768679.4343 40295.5028 44489.5496 69732.975 46102.3911 46102.3911 18829.5159 68035.9906 60803.3917 97401.721 73588.1194 61613.8939 58528.4654 36868.3944 49422.1442 17125.45 120114.4656 98838.9358 78990.8181 59123.0645 38179.4644 40653.8099 47926.3409 102107.6489 317386638 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 3_1_40A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 91551.2599 1402374.5223 398597.4807 4846.0124 337755.9424 58862.8671 5599.3793 6326.8608 11210.9282 58504.0082 12014.9952 319413972 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 43716.7694 38824.5725 19703.3681 32075.9414 15926.1121 27663.5708 74369.9235 35590.7084 80176.5208 51485.3876 65015.7246 800728.7975 48428.4588 36670.8377 176428.9851 24051.8822 24051.8822 40553.6472 58929.4681 30313.4906 34640.7943 88671.8189 98508.0224 28113.528 24099.6237 34523.778 20586.6948 71641.1286 47844.9081 42355.8228 19806.4163 99547.7967 56914.0414 19733.2823 91645.6744 374667359 dsrB Sulfur sulfite reduction NA Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 87079.1731 15119.3993 107699.0623 15454.8014 23092.9251 22911.933 20467.231 43408.8289 22823.0662 41650.3939 33262.0195 61976.5246 2354077.7637 37138.8702 142042.6915 179308.2429 81962.6409 81962.6409 27387.7196 111840.533 44195.2455 43872.8435 59297.9458 128341.9978 45420.3419 93364.4742 49920.478 82812.2142 132904.8822 79827.4132 86580.4354 201568.7826 45362.2213 85445.8213 34088.6298 49015.9123 302561000 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 20458.7937 7468.2506 21615.4903 36174.9462 4210.6139 51354.0183 3154.4315 7215.4199 7459.209 9415.9756 1211962.6441 13125.0992 8035.8777 10321.5052 82249.409 82249.409 8657.0284 50593.4008 9167.5641 11372.015 17503.7827 14377.5582 11341.6263 7772.2127 11414.446 10323.8849 17161.4288 14354.3051 15476.8572 5562.7679 15090.5652 9923.1091 4416.3433 10261.3878 294884109 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA24_4W superkingdom:Bacteria; 6468.9214 5306.8695 7543.9512 17187.0539 12879.0838 4194.4185 7001.2843 187978.6648 3763.6575 10250.6337 4045.5519 125177.2984 6193.6881 8288.8614 6970.3004 9599.2676 9599.2676 3603.0339 9953.6815 10116.4839 6522.8649 17741.4033 13756.4235 3315.2137 5138.9703 12754.114 6243.6772 17814.5724 13506.7716 13934.9578 4381.7452 4916.2013 5546.8023 4637.9662 9509.7041 62906756 dsra Sulfur sulfite reduction NA uncultured prokaryote 16549.7447 18843.7218 8744.3953 11726.6378 22362.8833 16443.4944 120320.366 27706.5746 20820.0349 11943.4871 202155.6178 14602.3057 20436.7474 12976.6515 11928.097 11928.097 34769.0332 28632.7132 17854.0324 14953.6627 22933.8258 17130.3167 12635.4918 14688.9471 11508.3311 11536.8803 34809.3469 17691.3633 27662.9612 12519.1414 19863.9249 23598.1767 13077.0874 25783.4124 259033879 rubisco Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 15472.1465 24605.8109 19777.4087 49271.9422 13635.7578 9876.6158 17448.5331 26760.5397 12970.0904 27484.6579 17900.4524 535411.1904 16603.5804 25309.8752 18655.7162 18442.5487 18442.5487 14271.0563 37388.6178 26482.137 11205.3478 28758.698 38082.065 149948.6805 16639.3065 48140.6724 22997.8808 51877.2684 40079.9458 53329.8496 41110.5982 23726.3647 20051.8359 12852.9378 15709.8708 311312461 bphc Organic Remediation Aromatics Polycyclic aromatics Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 39097.8039 6309.7055 9337.5838 5980.4596 2293.1722 4842.1134 2396.5675 3829.6516 319417.3297 10885.3068 15105.9049 13208.073 9192.1646 9192.1646 7629.1827 8657.3187 7347.1269 7376.2197 4064.5809 5409.6751 12969.2747 14426.7902 26822.2683 9206.9229 11908.3977 3878.1661 5085.468 15893.5879 4221.5532 19864.5025 295681094 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 357841.1553 51934.5736 387232.0979 617533.3126 367697.3889 264340.2175 467149.2596 261418.4245 126653.4525 211106.7186 276783.4197 209505.1647 11449477.4102 212981.6491 212437.2623 307085.4536 225108.0753 225108.0753 155001 315003.3887 133164.1424 150060.9196 279721.5906 675334.8843 198966.4342 173883.25 443074.6633 146235.1121 719899.3091 342965.6995 229787.0451 248411.241 139327.9676 177404.6803 210637.3061 383483.9306 145963002 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 42222.1227 5113.0725 5643.717 6506.633 6954.6031 17332.4391 12848.2709 66628.8438 4661.4965 4279.0269 7622.213 1929.5071 1929.5071 2644.1249 9089.6246 6971.8232 6745.1283 14070.6933 9778.9163 3872.6122 5857.6581 10488.0395 8273.3174 23472.5806 4031.2209 7477.4086 3175.6781 4047.318 6323.1541 5414.9341 10214.2108 351732768 ben_bcla virulence NA NA Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 26484.5619 32567.7497 3219.1011 3644.6109 5182.2476 12623.9734 3447.2249 10485.6964 6766.6202 6803.9058 2898.7246 8173.5693 12681.6017 10155.8201 4964.5627 6470.7303 1942.5163 3497.6017 3647.9812 2746.2123 229473018 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9851.7229 13070.0391 7529.1118 10748.439 12942.732 3817.1108 8712.5724 3712.7861 9391.3276 15554.2531 20688.5408 121538.9605 16308.5565 13098.451 8284.334 6869.8587 6869.8587 9090.8956 32141.2739 7934.9567 19842.7195 14614.9288 10875.2204 8565.097 11425.4828 24150.5585 6618.1117 21905.515 29935.5683 22212.8383 6050.218 13142.6551 11210.0134 5494.5461 6941.4634 302555349 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 61939.9312 11258.2216 21945.683 39093.4458 28208.3729 23914.0544 32669.1977 63300.6163 15190.345 24492.216 110960.8048 35684.6485 680826.7331 27104.2337 99788.8256 36623.0146 64261.7996 64261.7996 21864.8381 36571.2555 158451.68 19017.5176 33629.9958 34316.7719 16002.2085 20345.9615 49751.9122 14604.0881 82681.6735 47541.4626 44301.0171 11811.0922 23500.201 36399.7363 14324.9491 158510.0302 379050837 xylanase Carbon Cycling Carbon degradation Hemicellulose Salmonella enterica subsp. houtenae str. ATCC BAA-1581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 63598.8981 21993.7857 174908.1897 108804.5404 117420.7671 82199.2028 40337.0847 85189.8136 110837.8574 43634.0246 73113.3104 42584.7314 1391221.0863 60730.2157 107534.04 72581.6494 49731.7437 49731.7437 70049.7547 82058.2104 132689.1512 31585.6664 66106.3107 62417.736 29580.2507 93991.5634 78408.3574 38925.7082 104534.501 74043.4735 89690.1177 57342.4648 110271.5248 69624.5068 122800.1073 125569.756 51892055 napa Nitrogen Dissimilatory N reduction NA Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 4411.1215 5277.2564 3247.7863 383304679 amyA Carbon Cycling Carbon degradation Starch Eubacterium saburreum F0468 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Lachnoanaerobaculum;species:Lachnoanaerobaculum saburreum; 31288.4654 4258.7272 8761.3363 5836.9177 5179.8391 3233.7831 23454.0741 385669582 urec Nitrogen Ammonification NA Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 24380.3393 15374.6466 14040.208 10001.8097 48474.0172 14942.6905 11131.5922 238676.4719 31071.212 19261.028 337732.151 28997.3559 94474.465 16458.3242 32762.2709 32762.2709 10685.7135 55039.1653 24816.916 23388.8357 21891.8334 32300.2822 16526.1622 24641.0459 32588.5068 16120.3272 103790.775 30059.8692 27031.135 13202.3307 16584.3719 32147.9028 14093.8591 29086.194 84503025 TIM Carbon Cycling Carbon fixation Calvin cycle Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 219429.0799 70398.4994 88103.9117 168015.2638 18063.8034 122422.805 131205.9386 120023.0278 179209.7381 128777.5446 147915.2668 2713249.7752 138134.8033 134428.9921 699490.8105 154668.7455 154668.7455 63933.6705 252427.9337 77940.3698 275915.4925 135080.229 146027.2847 157955.6803 140892.8722 293663.7265 177841.4598 363563.6535 157171.7046 307655.1617 108860.396 132193.8462 267878.1826 89803.7238 386443.1382 112462395 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 74390.9467 27775.3069 41090.978 22089.6855 68224.7411 35209.4526 13183.0284 11817.3075 15817.6976 23451.4761 43522.9114 425230.117 33012.1908 43907.7479 30551.2869 27403.649 27403.649 10656.4583 31621.8328 19538.5271 24531.571 20891.6624 25769.6786 47327.5153 21768.3605 25308.2098 24744.2161 42579.5146 35050.3524 41070.0688 15535.019 20190.3728 14980.3791 13636.0689 19796.7088 383825688 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 16711.664 11462.6324 13901.33 8496.0082 11063.3398 13696.8037 11616.5736 10725.4726 13089.1232 35668.7794 12425.0564 263500.6863 20080.5952 16131.861 11632.2251 9198.7437 9198.7437 10133.6493 21108.8496 27766.7368 13362.1859 20654.9109 27681.9945 10125.0208 8941.6716 21158.2402 15698.7922 34720.4914 24358.1306 23654.3949 8221.5678 15283.4631 21465.7648 9579.2293 28489.1027 396470902 bph Organic Remediation Aromatics Aromatic carboxylic acid Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 18139.7657 5231.0797 32794.0729 271828.3209 50456.4979 5571.0446 63237.5682 6824.8946 26490.4045 28958.6592 33520.7025 3627543.7322 59278.094 70881.2711 196530.972 68205.0714 68205.0714 45018.1833 44176.9213 34657.4449 21460.1977 33420.8221 21107.5348 17106.5067 43894.4765 77657.821 22423.4482 70471.5336 39300.1546 57900.5581 40275.8675 35445.7896 39792.2074 22445.3558 21198.9134 302545897 amyA Carbon Cycling Carbon degradation Starch Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 7243.6981 11740.2778 17095.4912 11010.3102 11016.1131 7190.7204 7944.6248 44132.8538 25412.4321 58604.9482 6200.6486 8300.7243 16432.9738 8223.948 8223.948 5032.2697 13095.3035 6839.4312 17820.8093 8593.899 9292.5843 6039.9165 9470.1184 5381.5589 13404.621 7164.1519 21878.197 7801.0431 7229.46 7739.9956 3360.6196 15891.5105 319979254 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 178 str. F0338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 178; 9307.8996 7361.4692 12604.0409 9568.2727 9219.7103 30072.4861 4726.8062 15833.238 21400.2784 8978.4751 111408.0265 11155.2466 8984.0944 10371.2822 9258.9086 9258.9086 5112.225 116607.0338 11017.2942 13548.8111 16392.9617 10297.4223 6255.1109 8158.2481 113930.2959 5466.4221 25089.7476 31563.8493 15889.9137 20315.7309 22839.4815 8545.5675 4292.8851 21403.3879 334129782 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 46204.1389 20893.8862 40103.3039 57909.2927 7168.6833 65378.286 51002.764 47147.9241 98013.9587 70977.8522 61588.2674 1892908.4653 94184.1687 55629.7233 74464.6822 318797.694 318797.694 45210.5264 95002.2158 43812.1596 26035.5266 75804.2142 58783.9729 41540.2786 52835.4102 72813.528 108868.0927 116876.1415 105846.4551 73266.5818 65216.4435 69282.9181 42546.9242 41643.3095 54650.2843 340619916 xylanase Carbon Cycling Carbon degradation Hemicellulose Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 22146.8241 5743.355 10895.7842 13774.0757 19071.861 21258.2181 32908.0052 6233.4863 10871.4606 18855.8292 11651.8686 12730.4251 14191.6177 13490.5536 11647.1244 8753.5917 8753.5917 8590.3424 20636.362 9197.7949 10703.724 13719.1631 14248.863 5969.3655 9978.6863 12737.0181 6485.3619 29321.4272 11328.9775 17191.8543 7107.7666 12030.0512 10763.3678 7305.7686 12670.0279 219126721 nitrate_reductase Nitrogen N Assimilation NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 14877.2995 10923.2586 23424.1137 18608.4969 6946.7208 12429.8678 10307.6542 7764.8184 21407.1905 21846.8581 7984.2863 303246.6343 23852.0802 21395.5658 15593.6706 12405.6977 12405.6977 9447.8893 21210.4167 19276.0149 18609.6265 18736.0463 30806.7683 9482.4099 10486.0165 22330.5726 17418.4815 29886.8316 12114.8403 21108.3221 6824.8141 9727.4884 12851.802 21910.5844 25093.444 88185704 endochitinase Carbon Cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 87325.0539 10981.0307 23239.0196 9122.895 10431.3674 8102.4892 4088.1251 10910.3467 32848.7 6399.4527 267179.4709 13944.5043 13792.2087 14237.8594 10147.2914 10147.2914 7912.1823 23198.9267 15883.374 14126.0236 12586.2731 16026.1399 4789.3108 10793.5867 26175.0923 11133.4321 24909.9972 13394.8009 21711.1374 7800.7209 12087.0166 15109.8184 7183.9875 14629.0459 37519599 PRI Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 16447.773 10599.2034 9723.213 8121.6758 10548.2306 10787.0321 7980.283 8772.9665 17455.5222 19199.4845 7183.401 287811.3831 19349.3842 10724.3382 12384.0249 10697.713 10697.713 9605.1052 33680.2575 17078.336 11797.2478 50917.1803 23441.0583 13413.4618 10327.3288 18377.8913 10366.9925 11544.9542 5157.9137 24025.8052 6828.3409 12930.7909 16659.8109 7486.1119 50129.0801 91781192 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 146338.3932 15150.3353 74102.2616 135054.8945 51088.1462 64099.4472 194772.7367 50437.3253 111294.7889 62123.2992 152703.407 1385335.145 183246.7543 390007.8496 234575.8233 84483.3853 84483.3853 99112.9365 155946.8943 122217.4469 34044.0506 119846.3113 54908.2897 110577.7592 58909.1164 160681.9774 80411.0216 447167.7837 77254.6804 239886.7061 95113.7977 84479.0445 184758.6072 38210.0903 71320.9985 256688534 glucoamylase Carbon Cycling Carbon degradation Starch Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 44435.5991 9023.0412 5761.2777 22629.1181 110226.676 22203.277 7002.0017 6782.3476 10984.3642 20397.9543 103359.0685 16896.436 29675.2918 18201.1503 13060.7517 13060.7517 12115.56 20792.5282 16664.1983 8692.7454 17522.2498 8170.6987 10650.0928 10756.7347 18594.7018 9813.0194 19828.7323 15536.4155 16529.6505 2410.5436 15023.9428 22970.2679 11296.7949 11568.0049 375329092 cda Carbon Cycling Carbon degradation Starch Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 6465.6474 5824.7193 6179.8148 91687663 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 77166.0407 15749.7693 33272.9504 23780.6843 29725.4648 14134.6558 27609.5021 47794.5452 36364.3388 85898.2835 55385.9158 1479119.5732 28117.767 28099.1467 37758.0973 22523.3527 22523.3527 19400.5125 51224.5014 20748.2505 28433.972 34495.5003 20997.105 13742.2125 19457.3697 37957.0711 18731.5631 85419.0515 40064.6284 34284.0463 25711.4744 20032.5599 24463.4486 16605.9858 47644.0311 151585353 glucoamylase Carbon Cycling Carbon degradation Starch Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 171578.7922 38791.2219 29211.9984 56296.9939 32598.274 8310.7819 40170.4071 17705.4007 26685.3705 27339.3302 49422.279 43262.6187 591049.0648 54135.6128 48981.0873 56867.385 59079.5557 59079.5557 121190.2078 69891.2238 36511.0437 59375.8676 83306.713 77932.1689 28591.094 39448.5642 34133.2475 35188.0064 89270.8667 57901.031 62030.8248 27009.6762 37271.6935 42165.2397 21070.0899 53282.468 222102714 nitro Organic Remediation Others NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 14269.248 13603.5338 14535.8609 8501.2299 8400.0141 3672.4409 4956.085 6502.8816 68305.4067 4276.3942 6539.1699 8485.4295 10234.4778 10234.4778 3355.7203 7497.0253 7877.3954 27090.4703 5185.3061 7072.9133 2471.9367 27805.9991 7974.3428 57041.7394 13129.2498 6095.7509 7716.3403 13304.739 5624.9909 7265.0572 3959.1564 6826.5413 296426616 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 79780.9657 116130.7513 13244.5458 103608.8966 11929.751 246484.3934 18744.4542 23013.1178 89874.4301 44989.0579 25110.423 364786.7058 27526.874 26547.418 41392.6727 32357.4155 32357.4155 44905.1932 37445.0611 18418.2213 151700.1179 36579.1994 21462.4898 26809.9926 17689.1259 32880.7499 29109.3323 65565.4915 39178.7684 38632.226 22462.4136 18047.6012 30484.9157 14581.2789 34073.8056 126236567 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7723.4387 38369.9602 10628.635 7603.1081 113020.4886 4022.7125 16487.1835 6236.5717 6236.5717 10609.4689 12016.1805 5314.4294 4281.7491 2818.0708 7254.9136 2289.7647 15228.3967 5331.6383 1951.8323 3440.757 7400.3849 9617.4914 371580899 amyA Carbon Cycling Carbon degradation Starch Corynebacterium diphtheriae 241 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 93173.8006 13037.7545 8692.1337 16787.4506 5713.0711 8384.3285 4263.8203 17674.8365 14951.7437 9822.067 247700.0501 34479.9101 14504.7283 8971.0093 8897.1188 8897.1188 10360.5497 24692.487 16573.2812 12063.3511 20765.0731 14250.5116 7613.9504 7715.4251 22831.4899 9346.4718 28424.1016 18463.5528 17614.0904 8947.1489 11967.1477 10647.411 8967.3029 24290.3703 330995963 rgl Carbon Cycling Carbon degradation Pectin Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 4765.9029 3208.7087 5631.9334 1805.4237 5029.4102 328544339 cmci Organic Remediation Aromatics Other aromatics Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 97979.5637 81823.7457 22261.0758 62647.7109 26219.6552 230460.9128 22388.3905 28329.0907 32395.6097 50201.2404 45636.1184 625713.4638 50128.8829 81989.9972 53453.0501 73213.9086 73213.9086 34064.6098 107053.4972 37108.6247 55083.4142 74446.5018 69383.6861 33583.0431 61635.506 67031.6801 44863.9256 120727.2144 84511.8453 106305.0359 22537.9194 43816.6739 45196.8514 38921.639 57225.8846 340550630 nirb Nitrogen Assimilatory N reduction NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 47493.3106 705105.7351 17719.4804 36409.3199 6664.0761 26119.3689 45723.1856 99504.4888 23325.8728 52554.3656 30112.1881 729044.0444 25526.7529 52713.4842 29678.6768 29390.8363 29390.8363 18599.7805 31335.4956 32256.7597 23872.6345 32368.5247 536933.7389 107201.2539 20157.8764 32825.4388 24229.6637 187115.0838 44939.7923 38027.3445 14765.8368 60238.7404 19662.2192 17009.4371 42292.1879 170109003 p450aro Organic Remediation Aromatics polycyclic aromatics Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 610979.0236 84968.9973 50751.6066 48637.5419 106009.9007 41401.9017 70350.6806 43842.3486 40908.7986 61256.3165 76639.4199 47523.1402 1605286.9205 171555.9132 365145.1828 141456.4858 49811.2909 49811.2909 68377.5239 103254.365 49995.6843 72040.3889 62787.9863 146349.0684 91327.1869 47483.6211 76030.3056 56573.8612 81206.7371 86180.9069 79738.7835 47088.6495 84052.9288 37506.9191 118466189 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 19418.1714 7876.2316 11248.3094 7466.708 3554.0283 12908.6026 8234.7216 1406067.4097 5949.0574 5370.4607 12313.0159 40203.1259 40203.1259 2692.2311 9907.8508 4496.047 4953.6904 8129.954 4627.3089 3211.1544 3492.1138 5368.9786 5619.2408 10461.8618 13357.4572 6877.9573 5405.9855 6460.7848 8680.4828 2542.3189 6768.3815 161380507 tktA Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 9312.6824 26616.3644 6867.3138 19443.2458 20728.4827 5323.745 30203.1817 3123.1017 9290.7962 26173.5162 7701.7028 178902.0789 22205.7677 25486.1986 12206.2698 20595.3137 20595.3137 4952.21 19569.6906 13112.6278 9994.6402 28583.9073 7494.8084 5517.9836 9287.0656 17001.9637 12355.2879 51124.2428 9936.3653 17861.8207 11976.9428 8957.6991 12222.1533 7546.0935 9940.6016 30269525 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8039.916 6296.8669 7384.517 12185.2916 8985.6687 10473.953 3199.6595 3291.8638 4714.8268 9211.1725 4811.3736 169797.8835 7289.5026 5774.3308 9009.5708 2930.3841 2930.3841 5014.2214 11650.4397 7841.698 11380.1433 7198.6138 11182.9675 4926.4732 3463.9143 10222.6456 4820.5245 18757.0117 3782.7527 10240.2911 4901.8568 5199.9542 5528.514 4263.1319 10114.9535 332300527 ppx Phosphorus Polyphosphate degradation NA Porphyromonas asaccharolytica DSM 20707 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas asaccharolytica; 35732.1901 6517.036 60774.1029 3654.0105 8920.6247 1619.8562 296283048 ppx Phosphorus Polyphosphate degradation NA Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 80295.9635 17179.918 91369.1514 57078.8466 21514.7646 21718.2901 135487.6828 53173.3393 43817.4787 130152.0231 70751.8176 43220.4305 45440.4855 45710.0957 59288.9466 62123.7559 57330.5459 57330.5459 57984.6057 102395.9212 43407.4138 76628.5479 109384.6379 370764.4523 22234.2446 32970.5951 121783.7048 56538.9874 140538.3397 65365.1159 63857.5326 35174.1669 38368.6573 81625.9112 34151.8164 478485.0483 83316878 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 45720.8758 253372.603 79711.8651 59304.5644 21969.9596 25015.8463 41303.4402 24690.3235 37515.3308 30547.6182 32594.694 585334.8551 85646.4695 45188.0762 64670.661 46201.2701 46201.2701 15774.3145 52369.8589 18924.595 111566.049 57427.4972 29023.366 24093.7182 28293.1178 26535.5805 36608.5236 83574.4231 63846.7763 61600.8165 21086.7712 28998.5685 33554.4553 30758.0655 29737.1235 300772074 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 3932.4587 7679.4712 7256.4067 3352.6668 3784.6002 3106.9909 102974.1102 3634.0759 2334.2333 2334.2333 6068.9158 3633.9918 3773.2776 8856.6814 8591.9206 2323.6539 5362.2317 1815.3166 3328.8846 3859.3598 357386552 urec Nitrogen Ammonification NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 44925.5623 24395.2103 33776.9335 56413.1722 37120.5166 13244.2015 44025.2954 30813.2319 22700.3889 30846.0402 33851.4768 18346.4013 818862.836 38400.723 58704.8977 31136.7864 19766.4852 19766.4852 14422.615 49894.942 29316.8875 332064.4517 40548.0143 52281.8005 19213.6793 14476.3574 40618.9238 17696.4107 59697.5009 26827.3744 36623.6 22289.1016 21604.3285 21014.5547 17874.2916 54860.2161 43823426 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 133573.353 20450.6658 148098.6895 8576.3742 32144.0004 22733.1121 8033.2857 23308.1725 21181.1879 18691.0824 336316.9446 18515.9895 22791.3362 39565.5894 16318.2192 16318.2192 33811.3362 66140.1312 25750.2249 19880.0309 33897.5863 26100.8685 32696.3746 23078.1423 96859.8017 23308.1383 50726.3877 35260.0296 30844.8725 15519.6942 19693.6769 26289.8433 17076.9931 22342.8468 329850189 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 6904.3298 7174.8656 3263.437 2867.9579 2149.5664 4368.2774 3845.4516 2464.5144 133443.688 6300.9958 3541.5432 4283.1794 2605.0263 2605.0263 3218.5462 9373.1142 6987.5426 4335.3109 7212.7409 9804.6609 3326.9083 3847.9438 7496.9358 2875.6469 11517.9866 7878.9011 2798.5016 3677.3199 4880.8216 2211.2067 11294.9684 343468538 hao Nitrogen Nitrification NA uncultured ammonia-oxidizing bacterium superkingdom:Bacteria; 108587.3208 2366.451 4702.9325 2559.7566 317464335 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 25437.6389 50760.6232 107068.0387 51957.7071 5540.6703 10105.6647 11756.9853 6157.802 12535.5733 18185.0078 8627.1428 295365.2744 189448.5625 20446.0975 125697.5686 16311.0631 16311.0631 47272.1768 28047.4383 14745.128 1117799.2859 41605.9018 21582.1814 20820.5633 16280.5305 25501.1183 18824.8167 37481.1042 26583.7439 44939.0857 10542.3714 20046.2932 17811.3678 8524.664 102858.618 354815873 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 5636.5799 1375912.2461 4266.0059 44423.2958 2965.3245 3662.485 5937.5357 3697.9197 3697.9197 4082.4273 10548.9137 9028.1065 8885.4404 4442.0737 259476500 amyA Carbon Cycling Carbon degradation Starch Brevibacterium fuscum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium; 55053.2508 22806.8273 64412.2849 38482.0399 31141.589 10432.1085 80063.6018 52985.5274 32967.156 33865.3377 46100.0296 32079.0092 1305521.8437 182611.353 42714.9228 55752.823 32042.2402 32042.2402 473660.2775 52922.5811 29841.853 1458984.433 44482.7637 57606.5477 29057.8431 63942.9004 44622.3814 25247.6981 91894.214 39484.519 47689.9066 20517.954 29399.9933 32568.4973 28675.2979 73269.959 28057818 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xylella fastidiosa Temecula1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 8667.4487 6966.2696 4460.8041 3991.6122 5135.153 5063.7815 4594.7902 5382.9814 3025.9855 102613.2317 6027.053 5892.8637 3743.1535 3743.1535 3298.2922 15584.0896 5776.4908 3605.9656 6190.3509 16663.4729 6193.4441 3023.6272 7140.4033 19248.0409 19411.8235 4884.8564 8412.8591 3542.2577 7426.1696 6701.3703 5011.7293 6291.1405 71846680 urec Nitrogen Ammonification NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 14920.9237 193343.4942 16290.9799 25049.8542 7246.806 25516.2714 56211.7664 19375.3355 13304.1403 11340.7801 20583.7563 222570.3111 35662.4331 13134.5263 66317.0333 10851.439 10851.439 9330.2723 21408.5817 13317.0328 14397.4911 25766.4201 66562.3272 5958.7363 10416.961 19141.788 11021.3724 38198.2694 17225.287 18313.5047 9719.159 13209.9842 9359.9303 8029.5678 21541.3425 299134778 SoxC Sulfur Sulfur Oxidation NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 14971.7859 12437.6351 33722.1701 10281.627 4655.4665 6202.1028 7615.9096 5975.7226 18871.5797 135858.8173 11810.0187 8849.9919 11001.1603 14611.8895 14611.8895 248039.7859 11660.1403 7615.5864 5224.7323 43884.0312 14905.9769 3366.3989 5655.1793 60958.098 3671.2824 28052.5302 379540.1899 26317.0098 3115.4249 7165.0286 6727.3554 8237.0748 13326.1469 126360302 toma Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 1007150.4735 71149.4789 48410.0073 59247.2761 31608.3162 28851.6051 77817.7315 76791.8725 128918.2873 95086.649 95870.7619 4879282.2538 158860.5729 162101.3381 47887.3844 56927.5548 56927.5548 111063.6671 148137.4796 77361.1847 64377.2396 148268.8177 54593.9981 96904.0353 75941.4059 63726.0446 171978.9489 305851.7725 153553.0814 144549.2693 64003.7396 66419.5801 88609.6217 81960.1482 375730.5035 295924 xylanase Carbon Cycling Carbon degradation Hemicellulose Filobasidium floriforme superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Filobasidiales;family:Filobasidiaceae;genus:Filobasidium; 384737.3302 736219.1426 18546.6065 2821.3247 3401.8738 3118.8605 9612.4881 13464.473 2387.32 82344.8373 9679.8511 5691.7178 7255.7426 3747.5424 3747.5424 5110.0796 21401.4013 6153.3618 11960.9567 5816.3882 5249.6614 5309.9106 9346.9994 5070.255 11421.782 8158.5362 30077.2246 3996.7046 5055.593 6503.7729 3557.1491 8160.8247 398796422 nfsb_2 Organic Remediation Aromatics Nitoaromatics Pantoea sp. YR343 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11332.8484 78458.4364 6833.7665 7426.3319 10525.9685 9198.1934 8687.8609 14894.5389 7478.6216 356945.886 11752.4136 13469.4282 6652.0114 9282.6605 9282.6605 8144.3776 16208.8906 9200.3183 17650.3928 70450.2018 67578.6514 13256.3332 11728.4876 13480.807 9876.5725 28962.315 15223.8165 21937.5476 18890.5447 10153.6637 9948.8273 19041.3273 13738.9798 86750497 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6778.6612 5462.7654 8687.9031 15093.8943 3025.5886 7991.6425 2079.063 10676.3303 3716.5178 12826.6184 282111.6232 4107.7825 1976.587 1976.587 9115.4509 3919.3538 6770.1408 3799.7263 3794.4023 4972.6866 5646.83 11030.7796 4334.9709 4058.5594 3091.4847 2832.0901 5201.8774 226833852 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 65159.2646 1186237.947 9278.6739 403415333 badh Organic Remediation Aromatics Other aromatics Fibroporia radiculosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Fibroporia; 14159.2389 10060.4995 35011.5115 13523.9728 8757.5493 85970.486 11085.1127 10473.152 18208.1336 1364739.1013 46871.6188 21237.7206 32219.8533 31123.2281 31123.2281 9505.8899 28907.3613 21708.2624 11549.8612 20180.5466 13809.9417 13183.8277 28407.5765 33953.2458 13247.5678 51534.4358 72979.7003 35014.5334 14196.0996 15035.0179 26740.0858 10276.2832 10517.3091 400188044 bphF1 Organic Remediation Aromatics Polycyclic aromatics Selenomonas sp. FOBRC6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 67395.3204 29637.6511 43863.1577 23107.1737 23277.8022 5421.4025 46795.5284 36577.4764 9752.4542 26284.4055 38594.1003 34955.3096 687556.4338 31806.3125 139152.0681 28768.9533 45455.1287 45455.1287 20738.2534 53229.5357 28575.0329 52037.4583 92002.0458 46580.5343 32383.3841 39096.1477 53926.6245 36676.6649 89829.5931 36210.9879 55632.855 29207.9477 35091.0845 40063.0256 34439.1234 60208.2028 262274973 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 18268.1519 415374.8851 21133.4121 19938.3167 13416.1236 4626.7782 19847.5936 2392.1309 5554.4675 8363.3036 13419.7694 112467.8154 9517.8626 12494.188 8409.7995 9726.04 9726.04 5469.1064 15359.2349 9750.7201 39094.4312 6135.356 26652.6783 6244.3134 10056.6681 14332.2437 5679.0413 25390.1641 13908.2136 16112.0885 4712.2104 6849.0419 5300.5404 5202.7429 18655.8516 300311551 arylest Organic Remediation Aromatics Other aromatics Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 18057.6375 12067.1921 9594.8565 20427.877 13871.888 13773.3192 8311.7378 14883.1215 12430.1952 16856.8446 237272.7357 15154.3846 279980.2089 8198.8436 4986.459 4986.459 6888.9204 41222.1143 17456.2278 16138.884 110810.6323 31762.3772 7784.9604 7249.3083 20248.776 9755.5557 50476.3601 18988.0569 18968.2962 13372.5653 15321.878 31468.2183 9080.3429 27102.8735 406939851 linb Organic Remediation Pesticides related compound NA uncultured bacterium superkingdom:Bacteria; 7067.2401 5927.5179 8857.6392 5166.5184 2822.5295 3319.2065 7494.3092 9143.3722 6159.4806 257336.3806 12533.1725 8896.7894 2871.4177 2871.4177 6616.9682 11421.7796 9297.6123 10163.4705 8798.1265 12103.102 6462.4712 5519.8629 13651.2211 4780.7818 16815.1738 9380.4882 8829.0366 4569.121 6221.0394 8748.4226 4377.1926 11917.1182 206563969 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 27375.8471 9588.4759 6979.3569 7181.8173 6278.858 13687.4088 5715.6185 18808.7171 17901.8937 146292.7258 12090.3521 29830.3793 18985.4233 25829.3326 25829.3326 6999.3747 25190.5949 11811.7635 18282.3535 192459.8654 6998.6037 23816.6211 10026.1902 15691.183 8067.3275 49652.5033 21030.361 12117.9952 6983.0144 8397.8887 8677.8746 7573.1651 48828.6935 295414324 PRI Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 83106.5176 21548.5736 2787.1567 6246.3279 100491.2121 7046.0946 6146.9704 6146.9704 10654.6818 6484.3597 22803.6787 3925.004 7039.1254 9584.2779 11267.2428 11929.4954 4782.1453 6783.0318 3080.8321 30452.5994 212661539 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium catenulatum DSM 16992 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium catenulatum; 4071.592 10212.9735 2208.7557 2964.4054 6351.2188 123311.0875 3766.5085 6848.2541 5204.4488 6387.1247 6452.7025 5375.4172 8843.9576 7043.4996 4449.2446 4928.8071 254386317 ben_bcla virulence NA NA Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4224.3027 4467.2094 4671.1937 4760.9104 4723.881 2494.7882 6136053 mdld Organic Remediation Aromatics Other aromatics Sphingomonas chungbukensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 4110.9015 2167.3472 2912.0072 5705.7646 2704.0068 83778.426 2413.6107 2413.6107 7211.2369 4206.1225 4660.1649 6755.349 4052.9215 3493.457 7354.4607 2175.0718 2839.4229 2260.9301 87281169 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19210.8159 8348.1467 1752030.0174 21831.0479 7742.5387 6865.1215 4785.5371 12921.5247 14209.8188 7679.6664 189087.9095 13225.6612 17286.6622 7656.1696 7047.822 7047.822 10945.507 17590.5159 17644.496 46759.8677 15968.3908 19396.8119 32914.4128 7848.4377 38218.2347 7771.2761 34430.8885 7003.7379 14253.2216 10941.8965 13116.8712 10083.4952 6062.3085 18337.4399 343500135 nrfa Nitrogen Dissimilatory N reduction NA Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 765182.662 14298.7514 29669.1469 14037.5548 21888.3784 162862.3886 14242.4056 4502.6235 25536.9985 3731.7419 5669.0944 3643.0876 390616394 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 55739.5492 13739.1091 20272.2857 59650.7014 32372.4783 10573.6382 60960.4532 38248.9715 37499.0013 21932.4864 63430.3756 40510.3848 844301.9223 35490.7635 42050.2339 88942.1574 119665.1728 119665.1728 19001.6491 77055.4299 33474.4965 438007.9986 104846.7979 34624.3701 70817.9812 21641.0732 33701.8033 58272.2813 280843.9906 30420.8433 59951.4309 84532.6136 77540.6051 44871.123 33995.5526 30181.4789 227832470 chnb Organic Remediation Other Hydrocarbons NA Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 3701.4996 2644.3204 2208.1403 4673.1989 3296.7344 6101.8372 3832.072 3815.4868 4406.4264 2985.3885 10892.8095 4607.5501 4247.3468 6785.4353 3580.0765 4071.0885 4396.8592 6014.5976 89952115 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 7583.6927 19950.8343 6938.099 13811.5706 10146.029 21375.9993 36622.7533 11194.0695 11183.4506 11113.0866 258269.079 6527.743 8945.2169 10212.5837 12942.7721 12942.7721 4463.4598 24702.5124 7930.2247 12864.0326 10561.8008 8027.8745 4260.7251 16203.6007 9118.8892 6334.1382 16714.2103 18868.5619 29728.7697 5585.626 8917.0942 11970.9765 3851.1864 9512.4931 366160352 cda Carbon Cycling Carbon degradation Starch Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 20069.14635 7576.87225 9656.55335 7232.2708 11544.52075 8438.0784 14319.5837 8236.28455 166235.9341 17016.3158 15438.3772 13802.7079 10930.88195 10930.88195 19705.5739 10787.0006 11836.07655 10435.33655 6878.11165 15257.55155 8907.3646 41121.30715 18834.72615 15372.50275 10009.376 19086.6162 7600.5742 14106.3618 126249699 aoxb Metal Homeostasis Arsenic Detoxification Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 30952.4197 15744.5941 15235.4393 36059.1109 791408.4532 57524.1648 19218.5319 15381.5695 9970.6745 37027.4183 26883.0708 15092.097 630668.4829 38164.4929 28400.3223 15205.8201 16525.2076 16525.2076 22395.7515 92231.5757 47177.959 40475.3222 51602.4381 52119.9381 21578.7442 22877.2759 49775.8419 21169.8782 81418.1455 45670.5401 53383.6676 18104.5827 30535.172 24371.2552 18012.2557 45559.1839 94501701 mer Metal Homeostasis Mercury Detoxification Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 6760.2639 245706.9959 5402.3881 11957.5627 2936.5953 5404.541 4133.8937 4796.2564 7059.788 16011.0994 143115.0283 9891.4397 22478.9246 25966.3789 7950.4886 7950.4886 7035.641 20204.7602 7511.1811 18331.6587 7067.5986 5614.8583 3246.8047 6593.4456 8798.9142 4330.5394 21077.0385 8154.6781 12336.3552 4127.6794 6122.5631 4664.6382 91032.4896 4694.4285 384214990 phn Organic Remediation Herbicides related compound NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 19316.224 50693.6885 11383.4884 10617.3579 26738.8489 43850.7964 10353.3664 32679.3047 13729.5836 22526.4097 21158.3002 11601.8877 523307.2207 50587.8975 42182.879 47107.6388 33862.9095 33862.9095 12954.1193 24898.2752 23015.9494 26406.5405 74648.4063 15555.3923 9099.5128 21559.4061 35382.4476 101367.174 52471.8452 28163.1416 34021.9539 18798.4306 13258.3815 16800.7562 12292.1196 22591.2225 257460107 ppx Phosphorus Polyphosphate degradation NA Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 12967.5154 20405.9609 5113.738 16794.303 2335.223 2876.4642 4916.9026 4328.59 64197.5471 7738.6378 8459.6689 5881.5283 2113.7182 2113.7182 3078.6079 7512.5552 3894.9956 28673.3935 2967.7252 7604.918 5553.7239 19520.1145 13076.5385 28837.6283 4026.8924 12535.5813 6317.6341 9578.1222 5230.5708 99030507 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 197739.9934 34884.1472 25601.0321 53214.8458 349123.7906 34248.5394 49225.0896 43836.8421 15648.8957 39273.4108 39421.6165 41087.4222 1193667.0915 165868.2649 86187.9057 130839.0377 51393.9983 51393.9983 26112.5043 87831.5197 45958.9177 40407.3199 46730.7644 146516.6778 50650.8762 34860.0498 103791.5935 27891.1446 445076.6244 159933.1441 74355.4447 30419.8885 41303.6876 87480.5879 20648.4268 134504.025 255292040 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6174.4303 2362.6411 4223.653 4480.1914 5819.2086 3429.2253 104058.1293 5427.5875 4350.519 4166.9314 9329.6018 7274.1002 3968.8057 8222.7871 9260.9372 3253.714 2846.0971 8343.9071 3552.0806 12482.4314 5549.8422 11260.476 3247.4496 4236.5833 6167.5069 3042.9756 6960.0451 225001286 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9696.6882 6058.6165 7363.8558 7327.0577 4785.336 10834.7387 5728.4439 6401.2051 10906.435 6879.9756 262690.1144 6426.565 9476.0832 9963.3102 6326.4425 6326.4425 6889.7461 18703.2037 9815.4852 29261.5573 19346.3428 15638.7407 7291.7132 72455.8553 29322.8214 39224.0238 39781.7811 11444.7182 18822.6186 11898.7443 8938.4726 16158.8619 7498.2517 10370.7078 392951996 arylest Organic Remediation Aromatics Other aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 10977.4095 20836.9053 70818.4731 12147.2878 67798.8308 23565.6524 4003.2628 14816.7454 13770.4336 7232.2024 173643.6055 8047.8815 20190.8371 8494.2019 7382.3511 7382.3511 5323.9133 22494.7381 41661.7248 6044.3465 17939.5301 11054.4784 5228.5606 8712.2154 15202.9581 12085.0913 89564.0854 16623.1864 18922.1715 30022.1223 13880.2698 28312.7129 7713.9852 18338.1502 56695895 soxY Sulfur Sulfur Oxidation NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8849.8874 12817.1833 5289.2933 9006.2522 5812.7338 3551.2464 4219.3495 4596.177 4447.7065 7770.6543 4561.6481 82483.0771 10459.3373 4689.2286 7508.4025 8799.1472 8799.1472 4818.3624 21337.5605 6232.8071 6437.1103 11656.534 6778.0761 6484.6677 5027.3773 13194.9078 4150.1604 15736.2349 9771.8156 17803.3695 5553.3024 6866.8274 6952.3804 4005.3929 12634.9107 307218216 arylest Organic Remediation Aromatics Other aromatics Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 1005042.1054 12733.7851 1842648.669 13191.9912 6539.2618 20148.9904 15877.901 15120.6004 13423.2631 28995.002 9087.051 1372964.6463 40951.7185 84547.6285 11002.4565 9954.5095 9954.5095 18269.5412 25943.7935 18376.6258 28390.5577 196955.9244 29458.5711 22106.6756 12050.9191 33176.4472 14626.9533 56242.1038 29967.9384 20965.1064 10541.0464 19438.8817 21554.5749 19545.7541 34987.5724 29608371 ppx Phosphorus Polyphosphate degradation NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 18284.3478 4871.8832 10157.2619 50582.11 18248.6657 6272.4636 18292.4032 2449.7994 3770.6447 6099.3078 3206.7921 572284.0391 7299.0706 6173.399 7721.3539 3058.6607 3058.6607 3134.6066 12060.6548 12206.0153 5988.3073 10279.5544 4421.1039 5572.574 13023.5511 4246.9114 19008.4986 12769.8162 12284.5198 4151.1928 5397.8811 8348.2019 2289.045 225021187 terc Metal Homeostasis Tellurium Detoxification Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 6084.7864 4423.2546 7424.0547 7450.3903 11119.0307 8515.212 7740.9354 3335.8177 123266.2475 8370.7261 10034.8969 5702.5716 2535.0312 2535.0312 4689.1078 14732.9322 7754.9368 11810.7193 7972.5998 12902.4122 3765.0681 3881.4455 9311.9553 46804.9097 28524.7829 10737.1689 6847.7398 153362.0716 4781.4706 11488.5655 10662.9568 253689983 xylanase Carbon Cycling Carbon degradation Hemicellulose Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 12966.7287 25134.9731 13757.1494 22787.1211 6414.1531 7917.2626 36124.4005 12408.2171 22034.7812 15297.6618 7669.5535 549923.2329 10419.7647 11947.292 9212.8354 7601.969 7601.969 6593.3759 14691.3279 36966.579 10859.9439 16330.4163 16609.134 6172.5292 7579.3134 17332.0053 43840.2888 39146.6062 14569.4107 19583.5925 7352.472 11689.0766 8450.0641 12524.0137 11175.6073 387889453 napa Nitrogen Dissimilatory N reduction NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 8102.0109 7206.1435 12641.1223 5003.5351 2437.2378 4218.9066 2972.8181 12952.4643 5650.085 5650.085 4208.9563 9693.4909 3728.6577 5709.1197 6719.1921 20580.2459 13960.5915 6585.9991 8360.7516 17216.5424 8290.5539 9203.1041 2284.6427 4452.953 4313.4982 4854.6142 4327.9763 126355810 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 13214.1849 14642.8156 12617.4419 8787.5937 17307.0514 16016.0651 3978.817 17191.1529 19115.7834 6837.1094 231418.5376 20039.3589 21114.7985 11647.9108 8378.0246 8378.0246 8810.572 22483.2575 21059.3084 18070.657 25038.2013 20227.2375 7456.4663 9263.2126 24295.5345 7732.0998 30034.4315 13079.6234 17259.9112 10888.2221 15476.7317 11502.4206 12221.0218 22659.1248 160917640 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28279.3784 7865.9417 6228.3877 3520.0971 9301.5326 64361.8877 7618.3638 61281.4874 4746.8438 190311.0715 8130.839 11548.2345 7133.4233 3339.7372 3339.7372 5332.8223 15905.2784 7404.4945 15326.8115 7569.8998 9371.4701 3977.3439 4868.1816 6430.4649 5948.3647 24663.5527 8552.0041 11868.8609 6353.6651 7765.6076 4847.4819 68557.6542 6960.5186 359292012 cutinase Carbon Cycling Carbon degradation Cutin uncultured bacterium superkingdom:Bacteria; 5318.2735 10635.8143 25836.6582 7849.5304 5517.2923 2167.9332 2643.7412 5167.4425 5277.3596 65584.3532 4015.382 5443.7808 6887.728 6887.728 8007.9716 23502.5311 3438.7843 6026.3113 2065.2623 13893.8969 5976.418 7634.0569 2108.5592 5100.0532 5890.6599 2641.6304 4609.3835 358459482 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 6771.314 2531.2029 2539.1893 3980.447 4865.3815 65011.3069 13969.9643 4621.0502 3556.4055 13772.9225 6030.4028 4230.1899 6136.8925 6126.3616 2934.7771 3088.2553 8198.9344 3691.7049 16291.1597 6059.8467 8636.2498 3781.1755 5143.8012 4615.7658 2790.8417 9913.389 262209064 poba Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 13891.644 11471.2784 8631.7299 11030.2019 23199.4924 4741.0035 16317.1617 6512.6997 12174.0256 11268.7507 170687.7631 5772.0227 8044.3309 13391.5429 49215.9418 49215.9418 6211.2641 10703.2927 8557.9039 7733.1727 12258.9417 22329.9494 4400.5164 4723.3335 8963.9927 16545.7467 16805.502 8456.8742 13817.4488 5141.1789 5945.0278 44612.7997 4348.2997 10266.5186 288349063 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 56388.8705 39116.0253 31169.0906 115426.2649 42849.5196 25924.0046 244543.1976 694197.6588 64730.6792 202730.3244 78333.6724 123309.4888 3313364.6774 337186.2794 179085.8746 181708.7358 53245.7297 53245.7297 117363.9523 210102.0916 250313.2534 296425.7416 80792.9302 316508.6233 62472.26 85895.5082 606388.154 307614.3412 172433.5543 208831.3693 313394.1774 80412.2015 59003.9027 118822.7084 332807.7182 486408.3497 379988395 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7995.0323 29029.8252 9332.6986 2564.1597 2454.5718 5350.0934 5508.6887 2911.211 6302.3134 5696.8486 3474.6381 3474.6381 5711.7542 9847.222 5955.9024 8354.5777 8373.386 13221.6157 4628.5617 4649.9008 8196.9933 7458.393 13089.0926 8190.0492 9128.3926 4136.2491 5073.7868 3436.4234 4696.9242 8833.5022 262263151 pcpe Organic Remediation Herbicides related compound NA Rhodococcus sp. PN1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 11358.9614 3704.1459 3376.7929 11709.4634 75963.3239 8473.5594 6455.3389 8314.3644 3035.8894 3035.8894 7527.6823 3833.0239 6886.372 5896.0871 2637.6586 14013.13 6915.3436 2756.0647 20920.0925 5102.2436 10020.423 5457.3129 4558.6747 13006.7362 2066.2328 23447.7547 149783455 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 313580.8436 19164.2944 20969.4449 50939.4361 5145.4287 30112.4205 25994.43 12559.4084 71378.9254 25181.7246 14815.0565 785805.876 47289.7407 32524.5521 15142.6114 24563.8564 24563.8564 21764.8129 28459.2608 25650.1447 39068.9155 44507.8642 226217.3412 12353.5393 22537.8986 28074.1461 11300.4979 54138.941 30133.2387 29817.976 22422.4613 16123.3524 27113.3448 73360.5932 75393.7955 378784051 lmo Carbon Cycling Carbon degradation Terpenes Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 87077.5994 70690.6157 66560.9032 39862.0441 986068.4059 22544.2386 36332.3665 89656.9292 46793.0354 61447.8469 77072.3576 55190.646 892479.1326 51748.7754 59640.2892 74109.7821 80523.128 80523.128 56470.9883 131026.2058 41789.3132 67150.471 127001.744 107646.485 34955.5408 48039.883 95377.9149 61254.7949 272254.2486 123464.7473 113453.4329 34082.3625 59426.3917 93517.155 42338.6045 60989.5635 302416485 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 39109.1488 52269.0713 21280.2767 13091.7059 19117.4336 57920.8699 34427.8689 24525.8774 11127.8858 15429.5316 24978.4712 23623.9171 269208.0025 26976.0181 31004.9729 36907.8684 28295.6757 28295.6757 15181.9514 149987.3429 25017.1348 21496.6633 33120.3911 74084.5622 28939.7658 22276.1729 26210.4861 27867.2737 52251.7864 43768.1137 32525.4991 17817.0414 23088.95 26593.9576 17165.3706 37162.5564 170938100 pcpA Organic Remediation Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 5928.3075 9770.0551 35057.7689 3260.9131 3564.1337 4415.2934 5046.5063 5046.5063 5995.6008 19879.0931 3259.4705 5751.1833 26744.9806 17072.8354 3474.9942 4256.8043 298722607 tktA Carbon Cycling Carbon fixation Calvin cycle Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 9588.2206 5680.5552 6139.012 5031.2553 2644.5818 5504.2725 8689.3646 3930.8937 100078.2709 5201.4627 2678.2668 2678.2668 6720.3258 11332.7736 8201.2969 14854.7323 4835.3937 5286.0962 5698.9884 10568.43 4047.823 13875.1389 9713.7976 13689.5786 4783.8938 5724.5868 5212.9438 3746.5805 274576.2811 317018250 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 91347.9951 42481.8904 29639.4458 142727.4759 25770.4938 30536.3455 46243.8274 47476.3199 36363.3567 52816.0274 32320.5254 839960.6197 87573.4776 44423.3153 62396.3934 44085.6265 44085.6265 27397.7295 65394.6788 46659.6285 36665.4288 59815.2013 540298.7728 50499.7555 40626.3598 51334.5284 47766.7498 403691.9556 78773.5439 74110.2375 102437.8184 37643.9221 57869.0423 28269.2852 43465.0566 388527281 alkk Organic Remediation Others NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 5855.1777 17464.312 4706.0627 10603.8471 3120.5001 4575.3833 7542.5167 6428.9153 9520.0876 3530.8298 176385.6441 18466.1003 7806.868 9181.8915 7191.6528 7191.6528 2987.684 6305.6695 4843.4222 4536.748 4482.4508 2139.9782 4807.4959 21965.5372 5373.3268 8303.4068 11626.5302 12729.0648 8032.025 4103.0867 10795.6273 2035.1513 146191128 nirk Nitrogen Denitrification NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 98594.7913 28718.681 14859.5184 24231.1874 38740.4695 9179.9809 17210.6038 28039.9141 9240.7105 55024.7829 59455.1727 45566.5662 479447.2691 82532.7632 29145.5266 66521.6615 49623.1243 49623.1243 18305.933 57345.709 22017.6674 38550.566 35621.2755 26074.2791 28914.3646 30771.2094 97403.4409 24869.9011 100452.492 56609.141 40295.3937 14957.3414 38714.7278 94858.4633 20769.4263 40808.2569 329924211 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 28160.1353 21496.6746 37811.1919 28385.2535 19342.7292 25359.1038 30648.6421 22515.5641 49395.8349 37229.7261 19713.121 754148.1219 51719.4895 52548.6595 46864.5667 22683.0792 22683.0792 24227.7407 47789.5914 29384.7521 80069.6555 38582.1938 50552.4987 18129.7054 21033.8687 57047.2296 15173.3002 86021.6874 30946.1053 45784.9704 15082.0991 24724.1272 22490.2548 17970.1928 36161.7685 347580877 ppk Phosphorus Polyphosphate synthesis NA Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 13849.8285 32878.8945 18850.2961 2709.9823 2702.7192 6116.8353 8015.6165 102449.5065 4285.5793 11224.6149 15665.3295 7916.6968 7916.6968 14488.4874 6676.8544 4887.298 14083.2212 13358.1992 4539.0249 3732.6075 10428.7969 11564.1724 10603.9515 9842.0507 21645.928 2501.1602 4678.7388 4635.832 4161.5419 76781914 bphF1 Organic Remediation Aromatics Polycyclic aromatics Alcaligenes sp. O-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 5611.8696 2588.0179 3058.5222 2089.4985 3383.1057 4141.9923 59614.5915 4755.0974 2692.2646 2692.2646 2540.1273 3858.2712 4501.3726 4123.2629 2496.7702 2971.6519 5425.0366 7462.8968 4758.7007 6047.4335 2075.8459 4213.5408 6164.2026 2921.8825 5279.8378 126731410 phn Organic Remediation Herbicides related compound NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 41115.5116 41251.8654 35368.036 45343.3863 43784.5579 22575.3554 36640.4054 46333.2538 18397.5073 32523.0411 122260.0554 23760.2813 914826.163 52793.2294 42222.5095 38654.9653 24021.9833 24021.9833 25674.8071 53118.3788 38686.7054 52600.6562 50441.2281 45583.199 29829.6674 20716.827 46932.039 20722.6872 71686.7907 34225.4116 51220.1747 22649.3826 26145.348 28147.3835 14780.9891 68071.0154 296270719 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 6968.6978 12940.4485 7993.6742 5300.1735 25043.9534 8990.3265 4138.9192 6486.316 2299.9635 6002.9647 10304.8112 9427.4111 145620.1795 5381.9847 6549.3643 12807.7287 9512.8438 9512.8438 2958.2256 9979.7787 14235.3953 12217.8427 44351.2247 4007.6064 5454.3568 5754.1534 11993.5419 4146.0489 21646.7718 13927.2197 27673.4097 5911.6807 10154.8707 11937.0846 3389.1574 6731.344 29125884 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 126769.338 11677.5802 32313.0948 32825.9556 23764.3298 11607.8154 24294.5225 18931.7079 11184.8237 18250.4841 41121.2648 11868.4802 444889.7783 23037.6014 22416.0144 18689.6473 9854.594 9854.594 14460.3308 30361.4383 22222.9708 24300.2981 62287.7613 36631.7318 11431.8519 10339.9484 29149.0149 13496.3025 34449.7251 13250.7904 31164.8133 13590.7555 13866.7471 27320.6245 13003.9655 36582.8672 134291838 limeh Carbon Cycling Carbon degradation Terpenes Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 153741.9241 57006.9697 6922.3375 18741.5787 262866.9164 55575.9462 7746.5908 16657.193 13784.2744 37342.8802 1074541.8306 37845.8677 23303.2851 75083.1069 19438.4414 19438.4414 18517.5348 96863.4037 17929.326 111049.9043 90204.7276 13388.715 9136.0242 16321.4645 20209.3568 25914.0634 74333.0618 62086.1391 23724.563 19955.3781 20237.1218 33792.1428 13366.726 104497.4475 85091584 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 5612.24 4917.5139 13748.0076 8486.9549 7962.2284 3116.4561 4251.4153 6126.199 74927.1514 6133.1473 5698.6249 2712.2125 2712.2125 4215.9999 7923.6297 6354.9094 5200.7242 4712.9801 2381.0278 2751.0012 7025.3194 3060.0025 9463.0415 5386.8892 6693.3203 3142.6575 3963.1806 3275.7916 3076.5832 8208.6423 169759881 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6135.3342 1982.7518 2250.2066 2620.2186 6076.0042 4074.7317 75660.2607 3638.7896 5240.1673 5590.9291 12311.6276 12311.6276 6859.7021 21830.7636 10613.2596 4992.8738 10657.3182 3443.7518 9279.7417 4867.9627 3781.1122 5314.8015 5063.3319 3311.6905 61169.6421 385675636 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 40225.3161 14090.2346 5566.3082 7965.1293 7539.8023 7482.8789 6110.7979 10195.5848 17613.2807 7836.6771 170460.92 35836.9524 36067.6762 7924.252 4253.9367 4253.9367 11317.8449 15218.2749 11638.7242 9781.9725 16123.038 13461.9923 9195.5687 7907.4605 13520.2043 5587.9636 24531.3876 11103.1807 18598.209 11092.8561 11161.3747 10946.3 18652.1349 17598.9302 78167318 dsra Sulfur sulfite reduction NA Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 4289.3837 1998.322 2831.0383 3867.8667 6975.1778 114503.9876 4419.1632 3162.574 3162.574 3952.2139 7535.9895 5877.5267 11310.2887 12148.4887 5193.0287 3066.1867 3067.6072 8339.1597 3086.1091 12489.6015 6726.3397 7773.5053 2421.109 5192.553 6477.7773 2861.0834 8093.2029 109452501 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 27980.2873 38510.8948 17547.9395 36164.5943 15609.1998 39566.6408 12590.1522 48463.6589 19978.1303 19106.9095 40897.413 249365.6793 25237.9828 23595.2834 35536.1029 22946.5174 22946.5174 9322.5683 59606.6656 24727.8837 60515.4632 31502.4182 19398.5911 13414.0868 26295.1942 20424.3509 11602.3741 41758.8276 49967.6101 31314.6171 11259.3331 31155.5196 47100.4482 73915.7884 56823.4482 240247498 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 41708.7183 21038.7721 29953.6865 70899.0102 22234.1034 16841.6956 61164.8526 83069.9524 16842.0702 38994.1749 42238.39 24839.8364 97382.6842 67083.3105 145931.3087 56544.1642 46633.3638 46633.3638 21245.4349 183752.5113 35708.897 41166.8758 35255.8676 56622.8734 14486.8869 33108.6852 51588.0823 26039.4216 72538.2252 52653.0277 72014.2026 19721.3653 28004.9018 30896.5776 17361.559 48281.8051 344200929 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 36321.4378 11162.144 18558.218 33253.6082 53285.6669 14351.8481 28206.0668 24535.8266 32049.1735 26759.0351 23272.6374 13879.1009 713519.1877 33851.34 37057.9569 45567.9692 23817.8482 23817.8482 19383.1719 46140.247 33287.9959 41142.6104 45944.8567 66316.2618 27217.8683 20617.5467 43460.8191 39654.6869 452019.2947 39590.917 41891.4945 16366.8985 139313.922 26873.556 14792.9384 79920.6076 373100069 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 25672.1199 17079.8244 4898.3323 6145.4445 32026.5834 4762.6572 8472.9461 11388.8777 10783.0943 12785.9988 2447317.9514 5787.059 52830.8453 35819.1328 9555.5448 9555.5448 3007.8709 14667.0585 32600.2878 9043.4541 15305.9786 12823.8386 5562.8544 12438.4715 10036.0722 4454.1625 20031.4001 22488.0563 38547.2831 3396.946 11469.9482 36232.8244 13635.3543 7777.7085 119401909 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 108483.443 52418.4968 53311.1458 164974.3166 333841.558 53665.3169 228352.5552 32359.927 43947.2627 56733.7297 119824.6777 1056819.4924 123853.9691 90656.7767 106350.5752 70240.7208 70240.7208 187731.3433 128737.7388 98738.2346 94263.4237 123791.1546 33388.0689 37146.3589 71824.2597 88996.3896 60340.2023 141085.2497 73704.7239 153634.28 35195.9286 60250.9043 150575.8251 69630.3234 719669.6421 171057825 atzb Organic Remediation Herbicides related compound NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 22040.4054 34930.516 23923.086 35586.7366 12206.5712 6385.9345 12683.0775 17491.5514 10893.5208 11504.5426 8670.2754 121601.9562 13896.9247 393942.3532 22413.2337 11270.2667 11270.2667 5625.384 16964.2808 8745.0476 9276.5855 9938.0802 24983.1839 5417.1852 7021.0044 169345.8313 28362.1071 117334.7966 16883.1174 36083.1702 17738.0353 24139.0989 10540.3856 4010.5164 11254.5695 29466068 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 104681.6565 138917.1705 349287.985 85035.7272 13588.4129 72246.1923 114458.6027 29784.0351 114631.2965 30880.5289 116702.7581 385042.7911 94707.4268 127030.4497 92928.9661 70046.3119 70046.3119 42537.3061 84559.0846 226153.842 55361.6023 114677.1073 23097.7779 36317.0346 56053.1607 104565.016 59943.3716 103639.4494 68267.0081 99356.6308 35750.3556 70971.6519 94102.6989 19670.7838 231353.4989 134101440 nirb Nitrogen Assimilatory N reduction NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 17003.5939 10581.0671 6515.4421 17838.8962 5320.2963 14461.5194 17111.0147 30882.6359 10865.2349 28202.3059 9394.1471 298266.6523 11926.9474 26410.5325 27150.4691 12883.503 12883.503 7074.6771 26169.4594 17352.8035 9047.3522 19987.9487 14893.3281 6315.2359 9159.6294 16524.2717 7334.9345 34256.3861 18289.8745 21173.4029 14458.1065 8933.4137 8695.3389 9359.209 14289.8251 392946547 amyA Carbon Cycling Carbon degradation Starch Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 14701.55405 9943.1741 9125.821 11253.8532 17564.2237 8528.05585 14551.9793 9263.77665 12676.4347 61552.4034 14052.6525 84626.1233 20240.97415 10022.58095 40977.33245 15094.61985 6777.59515 261822764 cysJ Sulfur Reduction NA Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 6348.623 11463.0412 4319.8514 9005.8379 2659.6144 4126.3043 8371.4738 40596.678 100125.6691 7565.0073 8585.9767 8087.5141 3707.0304 3707.0304 4604.2663 9934.9845 9896.4342 29444.1086 39929.9426 8745.6958 3126.7171 4472.5599 10494.6017 13382.4205 16689.3702 11761.5394 26068.2419 4144.4004 5494.5983 19267.1248 5582.2464 12390.9556 440749233 nosz Nitrogen Denitrification NA Mariniradius saccharolyticus AK6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Mariniradius;species:Mariniradius saccharolyticus; 20962.1116 6002.3225 4367.3346 5559.1731 3645.8517 9837.8135 9796.0028 6232.4609 188428.5921 8890.0335 14301.5653 7548.3086 4001.0284 4001.0284 6290.6537 16868.1292 16503.8332 12548.2652 32391.2761 24980.382 5067.0417 5206.7593 17539.3517 5188.5204 21437.9005 16739.7912 18192.0272 5506.5709 8286.3653 10220.3635 6776.8073 15292.898 39649726 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9887.5169 6921.6695 55519.5649 30542.8442 9689.7312 115026.2711 7826.9488 4735.9954 94455.8604 4895.3889 4100.6969 8304.2702 12439.8437 12439.8437 3987.0994 11170.752 10533.7977 4653.5504 7422.3259 4870.8971 16053.6349 10884.6337 38845.5084 96872.574 12155.9481 73869.8409 11225.7991 4423.4661 5632.9335 4793.7271 14221.7134 22782.6357 126703786 dmdA Sulfur DMSP degradation NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 27994.8545 13792.647 54825.445 15752.5926 36937.0032 7772.2548 59701.7633 76093.9217 28842.1824 13941.1916 15642.2371 31645.6061 615872.9602 46165.2018 27665.0301 32422.9291 28496.9762 28496.9762 11856.9881 48679.966 12800.7134 22143.9206 30918.5958 78514.9036 11628.4883 19483.8926 21816.3495 21949.0661 43630.1859 18014.62 28556.9776 14631.6992 30480.4348 28022.4723 18886.0541 15156.5056 53636303 xylanase Carbon Cycling Carbon degradation Hemicellulose Cryptovalsa sp. BCC 7197 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Diatrypaceae;genus:Cryptovalsa; 8973.5313 3963.1229 4038.102 3416.7039 9078.3334 9302.4081 92664.8327 11600.3907 5624.6499 5624.6499 4030.6114 15449.7282 8246.709 20449.0419 20818.6306 11095.4074 4129.6584 4294.724 6257.2772 7202.5924 36440.2488 58427.2735 9077.1075 3268.5944 5221.0583 4507.3109 20979.9847 5336.0372 374613583 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 46530.4979 9338.954 4439.3699 18018.9519 7329.0169 4669.9241 6426.8195 5742.3328 6767.3937 12842.0086 9138.0426 221409.9641 19414.6712 15519.8524 16530.6172 12390.3221 12390.3221 5444.8822 20470.6316 10002.1409 9938.4043 11535.825 6364.2394 4309.548 7975.7438 17259.4421 27727.0349 26405.6138 11286.738 20578.267 5818.8615 8778.1308 9404.2453 10023.6941 22160.128 3378434 nahf Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 43347.763 17298.3397 21813.5875 240877.1049 30059.9651 14787.1737 18429.9971 35142.3896 32115.7022 30264.5614 28927.6925 24652.0103 1270167.2459 37684.8048 38880.8414 48387.824 23607.0436 23607.0436 16709.0267 52919.5327 26430.6059 44769.0012 45167.4229 40061.4456 19225.1356 21012.5241 29702.9317 15890.1791 61871.3334 16937.9868 36225.5718 16914.0255 24593.1898 24575.236 16768.3169 35181.6418 332652849 arsc Metal Homeostasis Arsenic Detoxification Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 18078.1675 5228.3723 7354.3817 8649.5657 7144.1036 51685.743 34524.8218 307548.1849 6147.0667 14900.8514 13818.8884 13818.8884 10519.056 10323.7209 6672.0943 9052.424 4750.2639 5795.7662 7378.9147 13820.9553 149049.9234 19533.3001 7359.6548 7709.7666 2730.1839 12045.0583 7478.7882 13050.9075 167594175 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 9090.5887 4820.8255 5000.4322 14766.4472 34558.7626 4471.8538 6004.0429 9117.1216 5359.8172 144913.6165 5247.1563 11321.5439 11282.4869 91437.8464 91437.8464 14518.4745 13692.9491 15235.0961 13808.1707 7182.8477 28529.4624 2204.2995 9801.1104 38488.0285 20270.349 16009.0515 9992.2708 8318.4385 5860.3173 4945.13 6198.298 3785.0407 9199.1527 171060286 ppx Phosphorus Polyphosphate degradation NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 34546.2426 23378.1927 44787.1511 61645.9472 30780.2674 16436.5001 160462.6328 116272.7116 109020.1209 68605.702 54708.9992 574351.0117 39105.4532 43714.5331 83473.8367 56899.685 56899.685 28755.2403 28694.4061 22954.3033 79098.4186 53625.6241 24397.46 41942.2229 26327.4708 58668.6546 22208.0903 73647.1686 38042.0769 63019.0939 16284.1642 25146.5567 31869.4002 18454.3827 31739.4731 53850118 SoxC Sulfur Sulfur Oxidation NA Pseudaminobacter salicylatoxidans KCT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter;species:Pseudaminobacter salicylatoxidans; 10641.1505 18156.1704 27182.0892 14062.7588 6348.466 8924.94895 7547.46915 8178.2157 8227.64175 10088.89125 297896.1338 15872.3545 11815.99755 11246.9257 8794.4432 20514.03435 12364.6501 9374.044 8941.6698 11829.85795 7362.33395 5728.5131 19088.5535 7278.85375 19724.24565 8818.21323333 13776.31185 7467.46725 11100.33365 14221.4498 4562.09615 13002.7094 260645477 pcpe Organic Remediation Herbicides related compound NA Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 32000.9411 12157.0315 8388.2579 27046.5206 14159.4733 24311.7485 16447.319 5674.7096 6032.6978 12855.2973 59053.814 455310.7197 52955.209 15147.6343 35746.2033 31137.9166 31137.9166 4745.9403 22419.939 13247.0078 7360.8664 25445.3275 11342.9434 10290.9339 9434.636 34853.0904 15999.7468 51641.1759 33071.4195 26453.1567 13534.0528 17289.7732 11773.1336 10975.487 56559.2521 374310117 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 4318.903 5502.4108 26571.6637 6468.3109 2696.7305 2506.9644 12977.9581 3237.5111 54231.7271 3572.7952 3179.815 2581.0272 2581.0272 3459.4425 3598.7126 5610.1227 3991.1564 8087.6279 2196.2061 2973.8031 18558988 nirs Nitrogen Denitrification NA uncultured temperate forest soil bacterium superkingdom:Bacteria; 24273.0461 8388.8549 8522.4417 10524.9526 8091.0316 5269.2356 7541.2963 105540.4007 7944.7815 156317.5364 15371.9471 6779.4145 10446.9176 7236.5143 7236.5143 22155.7296 20439.1448 11611.8789 10008.2614 13343.8078 33751.8418 9001.4739 9070.6198 11941.3709 11087.3028 38265.3665 19004.6817 17543.7762 5340.2607 11159.4901 25371.0487 5988.3197 20487.8179 23393013 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3799.4399 3888.5638 4117.4587 5203.7509 302389123 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 118603.2543 13641.8017 125390.5941 218924.1592 164029.83 42804.9869 44230.7509 141811.2206 69020.0083 81078.614 206292.8785 88717.0399 2739287.499 89211.793 172067.5218 217370.3663 109934.3751 109934.3751 59429.0136 155741.6885 96101.3676 125067.2184 317904.9493 90577.1447 65283.4595 112577.8373 164537.0573 61951.7684 204733.3648 111029.3125 112305.2687 270545.1013 140839.2862 122426.1302 80785.1511 100881.135 386759710 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. JS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 150083.357 22877.594 57741.7328 206043.206 143296.2644 31074.796 88784.6979 110466.016 112567.8881 60293.6741 59908.5926 91805.8942 1926985.0695 105701.7293 115294.8495 146418.0177 70550.7647 70550.7647 69111.2757 121860.3965 68479.1028 137681.639 124972.5102 149595.9291 82754.2473 54009.9224 91266.8124 62760.7009 166043.5715 49576.6449 130131.7383 78236.7743 71301.6702 68182.8229 78743.7595 138375.6931 190013014 chrr Metal Homeostasis Chromium Detoxification Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 4704.0653 5631.26 13648.1206 3464.1755 3745.5707 78824.6699 6194.0828 5761.5431 10159.1195 10159.1195 9501.6279 10731.7621 3870.6425 5834.5358 7297.0542 2937.0848 16375.7934 226912878 pula Carbon Cycling Carbon degradation Starch Clostridium sp. 7_2_43FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 23153.5963 11076.4224 16583.9697 15853.9978 6771.2939 20280.7854 12333.9602 10742.3236 16086.5601 17521.3199 5918.0692 505056.1932 19590.0859 20359.4679 13011.6113 8987.0632 8987.0632 13832.1694 28181.3614 18957.8119 18364.2306 25732.1914 29266.6834 11910.7566 9383.9737 21468.6565 10568.5253 40155.1182 23150.5555 25138.408 10478.6039 11740.0128 14940.8296 11936.5911 36384.9216 284015042 amyA Carbon Cycling Carbon degradation Starch Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 250189.2443 19670.0864 11185.1078 239834013 pcag Organic Remediation Aromatics Other aromatics Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 8178.5801 5882.8786 15174.5521 6587.449 4839.7307 4769.4263 5856.2325 8696.6582 3963.8943 156505.1768 6580.4236 6358.986 5341.2741 4879.4854 4879.4854 6874.7932 12248.9986 7804.0929 9604.4765 11597.0539 11553.1396 4311.4405 5139.1148 12276.4666 4507.5284 28542.3803 6617.8662 9584.2199 6545.5706 7657.6027 7888.8607 6521.655 11598.5415 340534500 terc Metal Homeostasis Tellurium Detoxification Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 4391.9214 23785.6643 7581.695 5644.1342 4743.667 37784.1303 306991.5195 3629.8791 7228.958 25643.1444 5561.376 5561.376 5666.6062 11378.562 6120.7079 7319.8439 5723.4538 4836.544 38139.3469 7427.3681 16696.9913 16434.9525 7043.7549 8012.0411 2041.3076 6548.793 4763.6266 2767.7898 6122.8923 309813295 merb Metal Homeostasis Mercury Detoxification Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 21062.6147 31451.5641 11370.4449 50342.6667 4681.5966 4989.4062 33482.6507 14744.1141 12707.217 202131.9447 12080.9623 23156.3512 28715.9348 21266.6967 21266.6967 7429.0693 22167.0289 16758.3676 19845.006 18321.0284 7186.7305 6376.4022 13646.9097 19932.8589 6766.5111 26923.5939 23580.3465 38833.023 42954.2326 16173.1568 10121.3845 13618.2908 5545.004 256578898 terc Metal Homeostasis Tellurium Detoxification Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 4503.145 2607.6895 5923.8171 6532.3001 10348.0081 10732.9077 56316.3442 3226.649 10415.2348 10415.2348 6305.0866 5656.382 7899.0576 11570.9509 5476.7777 2631.3711 2808.3804 5172.2518 3071.3104 4285.1259 5314.1408 8103.2364 5197.3276 315485282 cda Carbon Cycling Carbon degradation Starch Eubacterium saburreum DSM 3986 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Lachnoanaerobaculum;species:Lachnoanaerobaculum saburreum; 23465.093 2926.1486 2884.9416 4389.1672 310258.6798 8079.8838 6547.8118 6152.9227 4523.2738 2679.2491 20194.7641 177840770 cysJ Sulfur Reduction NA Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 55880.9481 28420.8416 36009.9044 21379.7276 13350.4775 32587.4584 16351.5951 15914.0172 29018.0307 27064.0954 19750.3382 748572.3899 39077.3542 32216.4505 44111.9017 16334.1554 16334.1554 21943.9718 44941.3468 28711.7528 33561.7969 38793.5596 33741.0828 34602.5297 23627.5292 31482.3315 15483.0878 133383.9177 34967.2576 71878.1847 20501.1125 19045.9804 21561.9204 24505.6167 41235.1491 294508767 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber M8 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 209115.7213 16857.7166 592451.9549 10887.664 3174.0125 9590.4743 3075.0207 10417.8591 12792.1228 18513.7528 118098.7286 11278.4217 10259.8617 26890.3686 200016.3101 200016.3101 6473.5132 21943.5449 17218.4625 277208.0396 37551.9374 17489.2519 35122.569 37181.0843 16426.6965 11915.0946 24447.241 16855.0685 40375.0655 6076.0351 26318.1276 22385.8851 6730.1451 13160.8503 54015281 amyA Carbon Cycling Carbon degradation Starch Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 165520.4289 92364.0263 19858.113 65737.9646 18743.2258 16623.9655 66512.1456 18764.2658 24107.5882 68257.8465 44331.4159 771154.3197 61855.0642 53092.9905 38836.8692 33645.0172 33645.0172 19570.4117 88187.2936 19146.1129 34914.6166 760154.6121 25147.1613 27907.9256 51888.9351 37000.8161 22095.8658 71125.4548 23104.5905 82056.8594 28481.4158 24796.0905 28130.3508 19531.6046 51311.4125 268615823 b_lactamase Virulence Antibiotic resistance Degradation Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 10031.1747 6170.8221 9219.9125 6789.9874 6386.2515 4258.5091 11596.8033 7766.1084 4938.5982 203311.2477 9959.1679 7418.3277 8232.0169 3446.3899 3446.3899 6294.4598 14783.6835 9845.5715 9401.2609 12648.0592 7514.7846 4201.2477 5229.0736 13024.7662 3217.0254 16575.1067 5564.7127 11949.3492 4191.0235 7065.8723 6468.3013 5673.3441 13041.8765 261212119 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4600.41 10426.619 4840.4811 2149.6656 9104.8683 5352.0622 2823.1281 163477.9246 3779.3442 4965.9168 2233.8701 2233.8701 3464.6005 8180.6501 5978.3018 8160.3256 4671.683 5662.3292 3004.2812 9845.4862 2113.9346 9190.1184 5255.1431 7399.6522 3246.6789 4232.1467 3727.1268 2352.7088 7438.8603 301119319 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 6669.7861 4123.5329 3085.3427 57641.1261 3282.5187 4283.8757 3464.9714 7217.6445 4810.9255 14523.1542 4991.4201 3905.6044 2118.3357 4297.1036 3728.1913 4775.0023 4707.2097 4594.6241 2626.4542 6546.8698 86750253 nosz Nitrogen Denitrification NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 94707.786 3833.2978 7349.7033 9351.7189 9030.512 73479.135 44817.3058 5813.2819 8735.1943 8735.1943 7002.7953 7505.1397 13031.6925 229437.5774 8391.3858 11358.8514 6605.9436 5502.2542 10175.9993 10387 7085.1522 3159.2196 5673.5382 13504.7007 4383.1008 7108.2961 309393257 cysI Sulfur Other NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 66314.954 15721.9505 26556.3574 32444.1607 12957.2135 13378.3326 20649.9045 109638.3129 19624.323 29305.7137 40190.2489 363534.4141 44595.595 32872.1564 45155.1811 60782.3299 60782.3299 12576.1256 41720.4623 14349.3361 31452.4246 42782.0274 33302.4636 14599.2484 18595.4095 31744.4949 22532.2536 61756.1546 16936.4004 37667.0348 13405.6477 27470.851 52055.9292 14951.0358 27221.3869 300723063 nitrilase Organic Remediation Aromatics Other aromatics Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 354818.3494 21559.2746 55430.8046 61444.9296 70411.9117 60558.6859 95660.8285 69530.7999 50155.2562 29445.9557 53608.1467 92505.1142 919238.4016 108212.6343 55687.6699 62987.2237 59199.599 59199.599 44575.4354 83349.9737 45003.4135 48126.6161 54961.7841 56165.1127 81013.4895 40541.7002 367029.5839 63108.3627 110638.236 92503.1587 72555.1902 162045.0873 53317.3312 58340.8781 34728.6553 72280.8824 257147866 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 161077.4179 18195.8933 8439.7762 10285.2877 118395.9624 21480.3465 12822.753 25924.3002 37902.6354 217732.4512 12677.3047 10331.5613 47027.054 13162.9079 13162.9079 93466.7412 156338.3848 15606.8726 14837.7036 83326.3482 10551.0582 16826.9495 35040.705 36765.4681 61792.1248 45712.067 20660.2735 23287.3484 10375.3659 22905.3178 40732.1502 31946.1766 32621.1198 374423417 xylj Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 49269.1966 6960.8319 6363.233 30659.8652 7432.6192 6912.026 7854.7125 3331.578 9966.0475 13955.9343 11868.1184 188834.4435 176208.8394 10970.7477 47086.6614 12294.1448 12294.1448 7748.4617 15483.7182 10546.729 6529.5892 16298.4962 13675.2423 10079.5801 8153.9193 18200.4894 5922.0575 19218.8528 10054.2805 17911.7551 5405.2503 12534.8258 8152.9045 5451.6884 15241.0302 381399977 one_ring_23diox Organic Remediation Aromatics Other aromatics Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 11402.8425 5252.5532 25281.5206 20853.5265 7260.2371 8156.0044 17711.4707 12767.4372 18527.9601 96071.8723 5296.1303 9116.499 4503.0814 12104.0296 12104.0296 13426.7792 5929.798 6568.5227 8596.161 5085.0576 2953.5142 27980.4442 12346.7003 4060.4876 16879.107 4408.2424 7031.6743 3617.4632 8712.9376 5804.7386 3722.8772 6586.3083 34496717 ppx Phosphorus Polyphosphate degradation NA Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 4422.7337 7162.1418 2379.3126 2892.2695 4762.6749 3024.8911 7643.0661 5398.4141 2711.7979 2711.7979 3333.7827 10488.6548 6668.3217 11266.0282 4534.8869 2572.4389 4879.7407 7732.0847 2304.6702 12346.4369 6629.9257 7742.3889 2999.4149 4641.6743 3100.3859 3847.207 8922.9949 114799609 phdk Organic Remediation Polycyclic aromatics NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8239.2833 10884.1115 8027.3314 2816.5799 115215.6831 19703.9483 168986.7592 6175.9199 6484.1547 6439.8673 4307.9022 4307.9022 7016.6813 10162.856 4618.1496 7967.8739 14532.9158 9548.5134 3661.2332 4728.306 9689.5843 5316.7747 12424.0356 13873.3603 11261.0365 4692.5296 7034.8622 7610.5983 5563.5228 161382231 alkb Organic Remediation Other Hydrocarbons NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 78111.6629 24346.5342 22536.1601 31969.8104 51136.2635 19041.3726 31417.1153 47636.552 19866.2901 35577.1817 43893.1494 74811.1009 2213801.7528 38424.3106 64584.9704 136121.883 72105.508 72105.508 17293.6772 90627.3962 25465.4706 146247.7843 69986.127 28433.1356 17651.6903 41053.5359 42157.4882 40750.1107 106671.02 43548.5324 41530.4528 22353.8745 34692.7071 53655.8602 28136.2419 52674.5181 27352080 catechol_b Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 82569.8835 14425.0626 69849.4037 87148.9885 57535.7757 18067.8704 39098.2658 71752.891 41388.7595 38576.0115 112524.4287 43824.2005 15901614.6489 64860.8066 65010.7781 56004.1759 55531.5972 55531.5972 38649.7128 81170.3134 68783.7366 45434.8411 73593.8106 98714.3941 27609.8347 29175.9767 62982.0648 46538.2775 129372.7835 50611.9293 68951.4888 40652.4271 38653.1691 44596.9602 53386.146 131773.2866 329956867 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 5273.1183 9046.656 4701.9558 1890.0432 145297045 catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 196137.1667 12838.1731 81573.8421 37000.7625 44456.0847 577240.134 20215.2943 59871.9009 56340.2703 32341.5975 50062.9672 908650.6576 49550.953 33969.3062 69845.2527 58499.686 58499.686 40543.6249 74699.7208 33024.0514 57856.0336 55666.5385 54960.7508 27465.4991 46344.4896 66980.9544 93012.6266 111300.6071 52536.7239 114910.1531 22628.1939 53706.5758 83027.0605 78112.3837 71135.8522 291196984 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 13204.2393 5462.3529 7863.8559 11917.1271 4225.6598 14528.7189 6185.7118 8543.2071 11104.2711 10324.7861 675799.1469 11041.1719 8487.5138 5228.1408 7377.1705 7377.1705 8997.4459 31214.225 11135.9647 12715.3576 18019.405 18072.9102 7044.8216 6299.5129 11295.9482 6484.5132 22037.114 10273.7909 14944.1108 5571.3555 9622.5138 19544.877 9109.8942 13683.4586 356415089 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 4321.5638 6323.9271 10999.4748 4930.6646 7939.7991 9039.6313 4661.7518 1897.4552 1897.4552 3259.1524 7250.8334 5421.2896 5840.6657 4728.761 2271.7365 2702.9136 5325.8015 3075.9194 11330.8625 8735.6724 6456.6874 2843.093 4737.3768 6920.5811 4663.7524 8674.3807 291445510 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 10364.9362 9576.498 7630.1843 7886.2823 4749.5976 5990.944 6155.4329 6156.5234 69212.4339 3652.5833 5912.0636 9576.4521 3414.7063 3414.7063 6481.8699 15773.088 7938.8389 6582.2824 6883.4314 6760.3961 4203.3227 3580.6608 11990.5481 4871.7317 11008.9682 10115.7704 11094.4595 4462.8569 5654.5563 4034.3718 2429.0745 5426.4128 399238050 arylest Organic Remediation Aromatics Other aromatics Halogranum salarium B-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogranum;species:Halogranum salarium; 13574.4255 4636.7408 7124.4528 3831.8909 33243363 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9126.667 10176.3361 83980.1616 9360.9115 4015.018 2716.9792 3787.6902 3570.1199 4771.582 4098.2238 4433.7139 2438.051 2438.051 6154.3448 4414.1046 18839.9453 10969.9851 1991.138 3127.2071 7711.6942 8321.2289 8863.9286 6123.2984 8046.7554 9740.1451 4039.0245 3031.0771 2961.5162 255707474 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5855.6039 6460.5272 2686.1752 4095.4728 4280.2405 56844.1658 4145.732 3543.3713 3508.5262 3508.5262 4067.6235 5471.6623 4696.8343 3991.9833 5148.173 2195.8592 2435.2506 3020.2754 8166.1046 6379.4177 2133.021 2836.9637 3694.0354 4706.1113 6341.7032 374663328 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 6466.918 2492.3423 6679.9613 6741.3824 4395.2607 4712.7061 88189.8034 6311.3251 4441.5555 3355.938 3355.938 3098.2199 13176.9485 4741.3719 4530.6133 2278.6316 9225.7077 4269.1159 10890.8522 36037.7887 7292.6248 8804.1557 3569.8882 3457.784 4855.2624 217330007 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11578.2817 5628.3518 10978.5444 23127.3036 20064.9671 20824.1485 8808.28 4887.1744 12175.101 15754.7187 17708.0162 219138.5349 12953.2098 12531.2248 8592.3916 11074.7734 11074.7734 6636.1283 15557.1277 9044.2636 8599.9824 21005.5793 12582.2493 7474.2401 6718.095 15698.286 9960.3472 26093.527 13034.0339 29345.2961 9068.7483 28930.0278 32791.103 7964.4938 14015.1878 350546200 tktA Carbon Cycling Carbon fixation Calvin cycle Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 10918.4496 49167.7984 2642.6553 2642.6553 5512.6155 30247.8423 22195.2834 5365.9737 12449.622 188989567 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 33279.4729 1185286.0884 12924.6005 952109.6584 2010.7875 10963.1265 2088.7767 8674.0741 12407.3601 21373.4813 165011.9216 9685.9318 17828.0608 13665.5175 12869.1843 12869.1843 113713.8959 164465.4153 12011.9457 12214.7619 8298.3338 9663.8314 8570.3953 9560.6643 8071.422 14130.2493 40814.3392 36093.0432 22573.9419 13120.1807 27383.9494 26513.6161 29468.3154 14476.1151 290954984 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 59851.9914 48199.4095 32148.144 20806.395 41154.3298 11333.0548 38385.7943 35378.673 59840.8446 121057.6562 39420.9246 35804.4002 848473.7274 71708.6259 59983.0322 47309.26 28150.3869 28150.3869 24521.1656 54201.9015 56050.8041 28828.7169 64739.3274 46365.5249 25658.4302 23063.2961 38407.0023 121619.1766 68683.9956 30323.0224 47995.7933 31295.051 32862.8037 40834.886 65203.9848 281228.2999 372269463 ppx Phosphorus Polyphosphate degradation NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 28217.6559 11992.6418 129980.4071 11568.2704 21004.6168 19362.4181 10496.6282 11809.2599 7676.3655 41862.5658 67307.3498 48011.419 540029.6162 22107.6444 124546.3269 37709.7949 23501.8747 23501.8747 15032.7551 65040.2352 24324.4806 146641.6554 46334.1037 40954.8964 13075.0747 38811.3051 38117.4988 30487.9478 71594.0217 49319.0071 59362.5395 16919.0673 41719.0706 38693.1678 25457.6745 241642.0203 149202059 nifh Nitrogen Nitrogen fixation NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 4377.4842 4459.4729 4218.9337 8344.7062 3416.2485 5447.2171 4786.7232 4788.0672 134143.4355 5770.0474 5259.3187 5775.796 3491.2972 3491.2972 2910.7126 9700.0045 5969.2201 4466.8156 4735.7379 2503.1688 2528.6522 7752.7036 3559.4648 8737.8891 10805.6326 8175.7534 5010.6221 4541.8903 4735.8145 2847.751 635295.2935 324109008 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 23953.2535 8551.0309 3738.9921 66801827 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5142.4888 7554.0137 34082.8975 5574.4071 3324.8445 8042.86 4681.8979 5392.911 7481.2137 6626.3825 159415.5814 8804.9587 19474.2411 21950.7881 6629.4691 6629.4691 3734.3709 6596.2735 7478.4531 4084.8026 5394.6109 5624.2396 4493.3212 8779.2491 14732.3648 4649.8267 21318.3155 11693.1826 16868.401 5820.3977 5999.088 4103.0153 4274.86 46104.1726 192764344 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 50732.913 4703.0983 2365.1725 3305.166 4458.6047 14617.0247 69553.872 8611.3641 5954.2667 2676.8754 2676.8754 4968.3696 8555.2717 21361.0753 2454.1799 4218.3603 15788.7085 2459.9241 10704.962 4026.6883 3733.9965 6396.3388 2920.2897 6400.8098 87311474 ppx Phosphorus Polyphosphate degradation NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 16144.7035 10550.7985 12738.7358 14324.0261 14103.8767 9733.3237 7388.05 10489.4702 20072.5911 6597.1475 244883.0391 14691.947 12777.4163 6660.6325 10177.2784 10177.2784 10083.7611 19404.3879 16697.6686 17817.438 22677.573 19985.2907 6828.0871 6956.0831 16663.2763 8227.4614 42335.2615 17984.0731 20365.0169 9547.1603 9954.1207 10233.2314 6993.4427 20483.6138 29466000 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12333.783 11602.0859 10287.4634 13675.3132 22858.3309 5789.0457 7303.4691 11648.2826 4150.745 175779.6472 10486.9914 8737.5371 7158.0908 3407.4446 3407.4446 6275.3444 12015.9132 7547.4997 8848.9816 9761.7494 11952.8016 5393.3045 23761.4153 25999.3676 5444.8976 17735.2377 17633.2077 11450.8531 8089.3213 5970.8494 10406.7015 5748.9083 15590.716 239995693 alginase Carbon Cycling Carbon degradation Alginate Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7078.8956 2506.0649 5433.275 2031.3891 238720449 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8773.2507 9911.5941 8690.321 5615.7262 4975.4038 8019.9894 13198.4212 5974.9669 112934.7058 9489.4416 8592.6121 5530.603 4493.8117 4493.8117 4565.0861 17020.521 11306.5454 12713.9663 15721.5676 31322.9607 7318.0697 4605.816 12542.8111 5512.0334 22439.9348 13682.3934 9934.9804 6338.85 6027.942 9437.036 4105.999 13885.4678 345125377 mer Metal Homeostasis Mercury Detoxification endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 4483.0536 53583.6051 2015.8431 2015.8431 7026.1856 214044303 urec Nitrogen Ammonification NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 21070.9225 9849.2094 24990.9711 56101.0061 7820.4359 53157.1893 13484.5113 17390.1264 423026.0304 34691.5545 89594.2871 14653113.3925 27399.2454 29276.9835 20696.2864 52269.443 52269.443 14800.4435 105420.5436 127395.4618 31021.3887 169876.6447 30770.4661 19164.2211 12538.368 22981.2812 16847.8117 52444.1955 19790.2073 139859.0981 13513.1209 18526.7613 144561.4909 14934.0999 33522.1691 120404199 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 20612.4374 17005.3391 55023.2085 43478.2133 3496.9444 5913.4563 2796.544 6593.7345 24942.8653 24616.8829 157494.4441 9902.6824 11576.6623 59364.102 4409.0598 4409.0598 4027.7982 13509.1162 7445.2031 10100.453 7602.3723 68403.3616 4298.956 10259.4626 20751.4304 3932.5306 14095.4432 20208.382 12926.9329 8488.5762 13022.3299 8436.8531 3805.3156 9585.8977 299741178 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 6900.4573 6970.6077 10335.7023 5459.01 4664.358 5508.0529 5286.6672 4347.1993 2216.5042 156103.5351 5181.9745 5036.6569 3518.0985 2870.7459 2870.7459 3251.8391 8096.5608 6489.2551 160864.2956 4356.4072 8679.9904 3377.3823 3005.622 8538.2615 2102.6343 13518.5024 7471.2151 7717.973 4065.1775 5540.9586 5200.6457 2825.0742 9398.5055 374653815 linb Organic Remediation Pesticides related compound NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 12763.0848 2577.7758 4450.8108 4811.2038 4173.39 4173.39 7466.726 9652.642 5283.1796 35368.6823 57537.9037 28915.3721 3202.3508 171131.7281 227453409 amyA Carbon Cycling Carbon degradation Starch Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 19055.0178 10384.6336 24179.2586 5152.9346 3310.1461 4436.0048 3065.4552 5805.0279 6086.6725 6003.5197 104395.3516 6981.5776 8924.5093 9344.6955 5680.0836 5680.0836 5727.8375 8276.2909 5364.0348 6660.4335 13285.5236 10793.2402 3888.9803 4835.4237 15752.3114 3891.2129 13288.5265 11496.3308 12527.8468 2421.5685 5488.7322 6883.707 3622.0888 7688.209 66801865 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 23791.0937 27445.4677 28172.7299 14385.9841 9495.4392 7324.7432 5629.4725 9012.9018 21678.1898 12555.8452 255743.8057 18403.7655 12064.1359 11762.1835 16092.3505 16092.3505 10743.0943 22860.1878 20232.6745 23603.0702 24493.0456 23533.9962 10922.2106 15725.5459 17814.6509 10020.8627 52645.6571 23282.2165 19299.5449 8223.4174 14817.3596 22684.5794 11196.7561 28134.6029 227069485 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 8165.4651 12801.7738 4330.0181 32571.3631 4080.3082 5284.3843 9758.2283 9848.3541 7503.776 23021.1351 60246.6562 13193.4729 5402.9596 37806.6102 2407.0942 2407.0942 4472.9001 12093.1232 3994.6207 23299.5156 37079.2302 9553.0331 3171.2616 4910.0972 11426.2592 6099.6195 33728.7184 27824.495 8495.401 2789.2119 7588.7119 6421.4613 5208.2272 170907.7949 162449708 nrfa Nitrogen Dissimilatory N reduction NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 6017.1121 9848.3024 16359.8424 4942.0138 65820.8607 8609.4473 5224.1793 6509.4417 57555.7106 6305.0065 6339.2059 8662.7256 6865.3379 6865.3379 16233.3098 10556.9109 4330.0016 58778.6271 22769.4475 3100.702 7411.2302 24159.7155 3032.6748 10013.9655 11802.4768 6596.2055 3182.3513 7584.3746 9519.3158 8889.5704 90424.9049 164637301 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 43508.2392 20284.8588 640316.5389 68840.5416 38332.6925 7177.2892 64223.5581 28485.4882 29098.5573 34459.083 36625.1366 20636.8003 986966.6866 40196.0673 47924.5073 74566.9298 24241.7084 24241.7084 29792.6964 51835.6334 34763.5506 36998.9932 71783.9188 49707.1689 34623.9282 19321.008 46534.5382 19451.4787 84087.32 42079.7331 45675.652 19365.053 26051.0735 27927.0004 21133.5086 198981.38 350598175 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7964.0932 6394.2701 5682.9676 8126.4484 38449.7861 16515.4595 6382.8109 3916.029 7918.3069 8687.5839 4248.4486 197733.6475 9247.0558 6465.6835 4401.5222 2853.7452 2853.7452 6087.9774 13499.1877 9660.6945 12339.6379 9615.1452 10980.1107 5083.4485 3595.9049 10476.3443 5770.7323 17962.373 9331.0513 15122.2525 18783.6915 6648.1454 8169.7943 7236.5422 13388.8277 89512850 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 41543.6877 12543.0861 25928.6006 47333.6911 46229.8582 25844.2227 32871.4406 28383.7541 16863.6956 34231.6578 38167.6101 32342.8411 1035101.5873 45765.5993 50437.6018 52025.4618 24052.8789 24052.8789 26285.0787 63657.8288 168652.1823 43973.8032 62870.8207 53164.4334 22410.8284 21872.7151 63864.2178 38498.9786 107140.5075 457735.8836 61102.1639 25223.0836 28603.9228 28447.3717 21887.6159 70229.4778 21229366 dsra Sulfur sulfite reduction NA Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 5865.4581 5806.3153 4992.905 2570.7361 4978.2093 5776.8566 3776.6156 171869.7602 8619.2215 6333.4829 4185.1359 10339.5758 7303.8285 5621.8932 9784.4314 9232.9779 3476.9279 3790.3135 9807.2591 6052.1964 15501.6908 9538.4336 10086.3402 4340.4196 5073.9803 5555.0646 5445.9716 10665.027 313587735 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3868.2237 15638.7901 13168.254 2565.9265 3285.2388 4859.9121 2884.1706 58201.1387 9495.0886 6922.3505 6922.3505 6119.1855 3915.0438 4972.3098 154840.9629 2359.9133 2829.141 159094.3783 6089.3047 8137.7629 5631.3716 2028.5809 5940.5689 3291.6769 4567.8477 223714300 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12046.0693 5450.6216 5758.6669 2885.0106 8830.0237 4897.971 4332.8725 7524.7602 5766.3206 100349.0971 5623.6891 7711.6129 4960.5771 8841.6957 8841.6957 16589.8056 17417.008 7879.9115 18084.5774 16880.0492 10743.4401 10995.4298 5633.1066 7871.4408 10853.4557 23306.0521 7405.2503 10027.2945 9857.0239 11882.0282 8521.5936 9814.772 72538.7723 10441635 bphF1 Organic Remediation Aromatics Polycyclic aromatics Comamonas sp. JS765 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 46231.1775 10063.3016 23801.0522 2089.286 7109.7673 7517.0919 18951.6122 14991.8561 15110.5629 155348.7064 8264.3443 28381.7691 9603.7277 9887.4433 9887.4433 9125.1475 20944.7866 7531.9027 11253.3033 17643.6363 4494.036 7545.0342 7787.924 75287.9859 10818.6527 91383.0636 16403.847 15159.2471 5665.8577 9550.7447 9327.6908 9566.0215 48428.6429 239816205 B_lactamase_A Virulence Antibiotic resistance Degradation Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4405.326 8791.5955 76057469 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 120305.908 18817.4682 46897.551 26342.5407 7762.732 15629.1117 19997.1963 80481.4024 14944.4838 48738.3122 19788.4564 510271.3699 12857.1136 32456.1237 59467.3358 30885.6029 30885.6029 31965.3149 48979.7624 12517.8451 45570.3269 686013.6446 73085.0205 60467.8339 13441.1681 27094.846 51094.3535 67195.9818 43077.1382 38159.1132 189208.1504 28490.2502 21907.2239 26909.1664 20629.5616 124002124 alkk Organic Remediation Others NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 6992.3354 7207.6813 5040.6141 4289.4924 3295.8807 7456.9437 4561.2659 114891.8956 5840.1472 5997.0135 5104.5485 2330.9144 2330.9144 3679.6267 12859.8386 7786.6355 6175.8117 11893.5247 15621.6606 6826.1714 4093.978 7868.6531 5276.0145 22473.7707 8235.2737 11248.7945 4329.583 8122.3894 5010.8944 6759.9139 12455.0288 251843343 arsc Metal Homeostasis Arsenic Detoxification Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 5007.7996 8416.4458 14860.6254 5245.4431 4371.7271 2294.5489 5952.7772 4317.2637 3138.9624 101763.4283 6894.287 7586.9403 5682.2001 3954.6367 3954.6367 3010.5615 6913.3619 7857.5065 6501.8097 4213.1632 7627.6377 2600.7926 3188.9307 13892.1748 4322.7907 11693.8374 5976.7879 9802.6158 4196.6164 3937.2131 3153.0452 2806.3119 5314.1279 91789243 vana Carbon Cycling Carbon degradation Vanillin/Lignin Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 43904.238 16701.7943 8851.67 144677.5157 7278.4845 9517.5761 12613.6546 8026.2246 89648.7719 10182.6278 5678.0166 12644.2971 12644.2971 2943.0412 35842.5115 6918.657 13638.1369 11046.4397 30849.8158 6935.6798 7088.7919 8532.4329 7665.9047 18795.2787 9337.5168 16458.4255 7619.7 7006.6465 17561.4406 7639.0777 16741.5879 119434078 npha Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. JS443 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5056.1006 5579.6326 2457.7609 3553.3733 9843.1983 5551.3789 130658.6334 11422.1997 265593.1236 7894.6023 6772.2332 8163.4425 2658.8715 3528.328 2689.4302 9694.2362 6904.0645 7714.9109 4396.2153 7248.2682 186164.6186 4254.7153 307727439 PRK Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5320.9879 7097.9709 2576.0114 4082.6899 3136.1961 4631.601 6392.6314 5044.6903 4392.3532 315592420 merb Metal Homeostasis Mercury Detoxification Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 4742.4925 37673.0841 6339.3907 11911.3165 4415.3175 3314.7072 4677.3516 6958.9767 4834.6745 14041.5026 3498.7503 6449.0042 12356.5344 6144.4686 6056.3994 2153.1034 3406.1222 2890.1482 300666174 pgk Carbon Cycling Carbon fixation Calvin cycle Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 8111.0367 9303.5775 9503.1921 6006.0803 62045.3231 2448.8855 4336.5956 29599.1989 5931.1954 166816.3422 9663.6624 6981.0836 9197.1656 8572.8775 8572.8775 6112.8087 14653.0595 7278.6333 5158.0149 13663.1314 13850.2171 7682.0729 7779.0698 12006.2042 10510.2933 20401.9281 9949.4396 12899.2786 5572.1475 9216.471 9165.9554 8747.9735 20299.3817 221738326 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8821.6974 10623.2206 14951.0086 5960.5375 4785.8552 4407.2196 4906.3147 7010.5152 4512.6085 88867.3809 7236.0539 8228.0986 2298.4409 2298.4409 5530.5273 10425.7275 10308.5506 11805.5699 13827.1859 14499.6029 6962.7735 5231.9469 12749.6891 16658.0318 31955.5255 7595.676 8284.1658 4903.2598 6265.7071 6862.0622 7818.1832 11681.4788 39941236 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 59742.0853 12170.158 8545.1964 21980.4833 4678.854 205785.8258 63235.8616 2676.5225 14298.0137 11332.5665 21719.0998 161931.1046 4471.8663 33001.2219 49602.8296 15703.7962 15703.7962 7003.6716 17264.8854 8848.0731 12899.8363 16805.4708 20256.1593 13455.4107 22051.9436 19918.2205 8889.6281 29152.1666 64753.2695 35921.8498 14412.8521 24768.9414 20067.6429 6456.4044 11148.9026 77378421 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8642.3285 5178.3405 13190.3037 12289.9655 5118.6201 7977.2224 24144.5442 8317.3029 9192.6932 4780.2499 100580.0341 6314.8212 7612.3222 10030.7583 4083.2176 4083.2176 5554.8906 21427.1222 7924.8442 7957.0678 11684.6654 10484.894 12294.8581 5980.8925 10319.6865 5687.9258 16050.2404 19391.1523 12718.279 8538.8982 6647.8572 13638.9566 5761.9713 18530.6442 209960629 sqr Sulfur Sulfide Oxidation NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 20835.904 14084.4382 19554.2023 118057.8468 27569.2436 10435.4049 35018.2113 6619.6303 15771.1569 27951.3032 51974.6896 546486.5272 27338.9253 38850.0432 50729.8792 26070.8879 26070.8879 14936.0686 20965.329 19627.2762 8712.43 37337.3639 25973.1389 10605.4088 23956.3693 47608.8302 13169.4412 38943.7172 43252.7878 40470.8825 19242.9378 18829.772 19020.5541 10335.6471 16901.023 26989303 atzb Organic Remediation Herbicides related compound NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 14899.3578 5816.6295 28705.3546 5651.8907 4521.4659 31991.9055 6288.6568 33330.963 8658.7041 145798.7001 7263.114 7659.0776 9384.887 4694.1139 4694.1139 15977.5321 15822.4665 10763.0546 7299.3264 12547.244 11221.5888 7511.3383 5797.2019 35686.6062 5244.4915 45109.4716 14876.8406 25122.7502 8448.9282 9153.5623 10681.5929 10640.4375 16931.5667 303293278 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 15210.4642 8705.1445 9286.4765 7828.3367 13375.1709 8005.6891 6390.6076 14169.6075 26560.5331 11491.9765 264319.6535 15566.8147 18027.434 13245.8171 7287.9448 7287.9448 11253.4701 21561.0746 20440.72 12502.9077 13721.3532 22931.074 7291.4889 9456.2593 16313.7214 9365.4074 34203.6797 9259.3715 17222.3807 7255.9086 10274.8159 10278.3605 9783.9363 18794.1518 397735686 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 40904.9601 15294.2906 7819.1863 47538.9796 7478.3108 24487.9721 11070.0953 29962.6163 150076.8505 17860.0264 15462.1967 46624.2203 4462.0799 4462.0799 10968.7469 23520.5874 11710.0289 19070.8112 51993.4274 308198.2892 53123.3936 7938.1653 16464.8614 204629.5917 71146.2011 29949.6715 19976.4237 10691.8902 26120.2193 19514.788 16276.8267 271957.755 384371448 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc8 superkingdom:Bacteria; 4643.6978 4546.6292 8815.2226 75662.0125 4586.1732 27885.1152 6983.2402 5792.1032 4646.9852 7676.4323 4544.0203 3188.19105 8314.7148 13612.0871 5694.2097 11512.8114 16358.001 3901.4335 4630.675 1813636 nifh Nitrogen Nitrogen fixation NA Frankia sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8472.7705 22926.9028 20208.1031 5603.9043 5829.4642 2597.9745 4346.358 10172.5029 5661.0604 210013.6796 9133.4454 7164.9981 6053.8407 5175.1245 5175.1245 18359.7636 14638.3626 14504.9207 7231.1464 15439.9248 13443.9246 4588.8869 7810.1911 11105.0316 12193.8734 21402.6019 5387.9388 13218.2691 10581.6876 5556.9214 9085.1176 5837.4978 11634.2029 390618611 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 18620.5114 121136.607 14895.8617 9946.587 9276.672 6695.896 16362.1636 9670.2279 9032.5912 14731.2264 26031.6288 13101.0022 243816.2935 17967.8864 16881.1034 10286.3051 12090.676 12090.676 13155.3061 60112.3985 16158.7339 14487.8888 25435.261 16553.1178 7361.7429 13294.2295 17810.7762 67032.3354 37444.9644 18114.6116 29071.1233 12002.3028 23442.0773 12344.4858 11416.6103 30785.0325 305679617 amyA Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 13114.51665 17296.6844 23121.9016 19287.771 68054.053 14307.6577 12261.49185 9652.7803 52770.9189 31102.9802 17349.90155 18065.5891 13687.4944 16190.9125 5993.35025 20025.85855 6521.70975 25272.16565 8690.64075 10692.32515 383702536 cysI Sulfur Other NA Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 16902.2419 4409.5499 5494.0844 2643.2635 66473.0959 4796.0599 2129.471 2129.471 3331.2998 334686401 amyA Carbon Cycling Carbon degradation Starch Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 41084.1925 25136.8479 5665.1628 18427.7796 9181.2137 11545.7095 21162.5438 5848.9559 20057.168 24818.0965 32100.1867 206918.9097 26959.5011 18556.3067 60222.8071 46406.9323 46406.9323 15556.2103 44893.6287 18268.4182 32806.9731 35389.0668 10326.1275 33661.1615 11699.7999 20840.4206 18806.0765 78262.2086 31805.6176 48470.28 14029.464 18302.8709 18486.3487 20903.453 20316.6087 219883358 pcpe Organic Remediation Herbicides related compound NA Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 8353.7803 5975.2323 5230.7179 16866.8998 3736.0036 4469.4572 8030.4112 9410.8614 5068.5297 854062.4358 13502.7632 60683.6716 4050.4868 4050.4868 6401.7029 14760.4919 10904.9973 7100.842 6087.6109 4712.4492 10547.2308 13770.2935 5178.4479 47823.8959 21196.0317 16148.0034 5743.7704 6707.7155 9748.4957 8347.3878 9843.2773 62825529 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 11403.4716 10514.9247 15374.4605 2386.2441 6788.9275 5437.76 37167.1501 25264.1064 115333.0731 99679.2244 38223.4361 31744.7207 33582.2965 19940.229 19940.229 25953.2504 9699.6441 7642.1075 5774.0849 8718.3414 4753.9848 19729.6434 6662.9419 5682.755 17605.7416 9615.1468 131412.8215 4737.3028 5920.9289 17628.0238 5977.9493 5371.9792 398346777 chnd Organic Remediation Other Hydrocarbons NA Leptospira broomii str. 5399 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 15134.2172 10444.5413 4987.457 20290.804 5298.5298 123896.6266 24643.5532 2957.7364 5986.216 22410.1327 9709.6698 186397.8217 10026.1708 18061.6662 19760.8923 12094.1181 12094.1181 11267.3953 30354.9291 6673.8455 4693.5043 20212.2837 11367.1625 5057.1673 19575.4138 14139.0773 17131.8013 262067.4937 15506.7588 10762.8567 3643.8661 10586.695 25476.0951 6754.4499 10415.4843 352113941 rubisco Carbon Cycling Carbon fixation Calvin cycle Natrinema pellirubrum DSM 15624 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema;species:Natrinema pellirubrum; 5016.3512 19187.6197 4208.0334 7165.0266 6825.223 98821.9768 5572.8488 5572.8488 12519.1786 8284.8369 3637.6033 7001.5715 9231.5427 20083.0614 9001.8535 7113.0943 2842.0686 3863.0243 7260.3814 3995.8198 209486081 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3919.2666 4312.1196 2227.3663 7408.0749 64783.8383 1906.2538 1906.2538 2816.6889 5640.7361 4556.0984 14510.8122 34308.2646 4103.3501 2327.5952 10182.4043 4989.5741 2013.6659 2871.4424 2879.3907 2233.4922 11155.1428 332306701 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 13238.6979 8300.3916 2531.4351 4608.0437 67850.8379 62616.133 142918.2379 17506.0358 5032.5643 88446.6799 4580.805 8693.8554 5157.0829 14311.3392 12167.9759 15502.8257 4700.3501 2955.4834 34195.5214 6523.6403 20113.7445 5261.9165 3945.2572 73539625 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 69151.7998 31892.7134 17375.4134 6757.2732 118391.6767 16912.5217 28188.7801 68409.8317 435705.9776 10237.7359 90323.4447 36951.5505 58742.6652 58742.6652 7943.5075 51532.2102 38635.4322 17692.2775 23802.2196 136670.9149 40800.8519 19499.3863 18796.3884 31180.5705 77437.326 17710.6254 34105.5314 96122.192 21818.5985 24379.0114 16149.1749 8949.8718 113875120 phn Organic Remediation Herbicides related compound NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 6042.4605 4733.0599 30148.4417 4644.737 13223.5075 18118.7201 6059.94 298246.7375 12061.5584 9338.4232 6495.7998 4089.6056 4089.6056 3965.9713 23994.431 8723.9715 7236.8733 9989.154 10113.1371 14327.6405 4238.0559 12874.9722 5265.0244 19485.4408 12696.9484 15806.4832 6671.0947 6440.8259 6857.7419 4717.2067 10194.5656 295827405 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 57741.2415 335247.821 46600.2073 329286.1294 80957.8342 12784.8974 48790.5159 58496.0821 19072.0667 46434.0446 34104.1164 944921.4549 40027.8552 128162.5174 158239.2325 66555.7361 66555.7361 21255.6112 79440.0112 34200.4603 17297.1884 25953.2032 25983.6491 18567.2003 38932.6198 109321.8648 17460.4414 79848.4048 92163.9934 92899.352 23519.2385 37815.4308 40587.8274 11414.6131 24952.2492 296844347 rgl Carbon Cycling Carbon degradation Pectin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 31396.1148 27408.7775 90279.7355 31603.099 6592.0498 9894.83 18868.3136 20089.9769 25415.4907 36810.151 75647.04 298027.129 26533.1245 57693.9131 115303.4906 46864.4578 46864.4578 40802.9234 56186.4515 23863.5309 42812.8666 105009.4776 37682.1206 21252.9226 39745.5224 41526.6842 34063.6738 132094.4832 52620.9275 74064.8923 47731.2553 41512.2858 35137.993 21460.4369 36242.9361 206569030 proO Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 4475.4745 5418.3182 82523664 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 80413.0917 46136.4109 4427.5593 31952.7323 12332.6482 45055.2473 89276.238 56545.2195 26387.6637 93091.4949 64158.601 2504415.3333 40916.6255 148494.1503 107745.7477 154757.6498 154757.6498 18859.9553 394675.5238 37943.5425 44670.0303 85276.9782 31431.6072 27002.2327 69137.5028 50665.204 49994.0592 134730.9035 55845.7775 72657.3071 42487.9618 46105.782 74863.2434 26680.8988 65822.6513 84515568 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 21901.2612 6576.6544 6837.8629 17702.72 56342.369 13448.5145 10693.4531 37900.6351 20228.9605 8882.7793 440546.994 18541.6122 13902.4694 8557.1396 8061.2467 8061.2467 11307.4063 22289.8206 18989.5925 11548.51 20884.2823 20668.4218 10603.0292 13090.5945 21685.5989 9806.203 38891.8629 27056.6674 20172.6954 9951.5298 15444.6534 11670.853 9078.7923 229430.0265 56686446 Sir Sulfur sulfite reduction NA Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 51321.9858 19885.2376 56030.9614 115337.3403 161638.144 30998.3303 39306.7421 67792.9714 78266.6487 70870.4238 118115.0735 84132.1904 2315574.2122 85891.3434 148701.9868 83038.1024 81414.7068 81414.7068 44065.7026 85409.4488 60772.7322 224697.7623 112422.7246 91890.3424 32821.7998 42542.028 89153.8476 49649.578 157412.7226 103214.2139 121439.0895 37780.9431 51604.5645 68974.0005 46085.7191 63912.1574 387130685 arsc Metal Homeostasis Arsenic Detoxification Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 15831.7973 8160.7657 9576.7281 23999.5855 6609.426 7711.2277 8488.5334 6413.7989 21069.2152 93870.059 12676.207 138400.9632 9595.4718 9194.4716 10340.2227 6586.8417 6586.8417 5855.8538 18280.2247 13572.5086 945101.1607 11650.0551 6969.0375 6955.6886 8058.8793 12100.64 8216.8065 41545.3545 8425.2167 13862.1675 5326.8265 5825.4888 8378.3779 5098.037 16454.4785 308159637 hsp90_Fornicata Other Phylogenetic NA Giardia lamblia P15 superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia;species:Giardia intestinalis; 4406.3534 6938.4789 5153.5149 3062.8236 2644.8378 4248.4309 2859.033 2859.033 3820.9676 2296.0046 8428.5632 3923.6964 9971.8812 1988.3437 3123.306 2462.1393 13446753 pcpA Organic Remediation Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4727.8583 7270.9249 5063.2083 2813.9081 4347.3363 3196.1597 5464.4477 11004.7286 56485.4758 6263.5383 6250.3347 10802.9413 10802.9413 4524.8317 26649.9455 7540.3007 6782.9054 6011.4074 5742.681 3805.6073 9952.5535 12755.6573 9331.5927 3396.888 12977.6524 7832.6264 2521.3673 7813.8184 365824336 amyA Carbon Cycling Carbon degradation Starch Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 4204.2148 2273.5091 68140.4242 7902.5503 7573.7421 5172.4212 5558.0908 3263.9475 2526.2857 8994.9297 4230.8944 7117.9832 2690.7835 2804.6011 3472.4016 2683.3037 5462.4017 295441111 thl Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 16392.1336 244697.5681 9619.9986 9243.0757 11201.6158 6787.8375 10380.909 14671.2113 9488.9057 27666.7118 6164.8886 452150.3677 21211.5232 21452.9972 13690.366 56713.4967 56713.4967 12466.1438 26553.8145 23223.4419 23356.8925 39302.7374 21241.9963 10405.7944 11051.8819 20493.5283 7692.9545 39721.0722 24253.1073 25760.328 13101.4112 18554.4939 13316.4096 14228.6702 18399.5698 256822230 vgb Virulence Antibiotic resistance Degradation Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 4515.8285 28384.2921 43038.9802 14458.9532 2821.7501 92453.8413 3781.9062 6520.7137 4262.5945 189026.3003 8584.5067 14662.8505 38571.033 14233.8944 14233.8944 5880.2821 7084.072 6965.1737 10487.2842 6671.6021 2501.0601 6513.2695 20293.0084 5327.6612 24078.7735 17239.1343 18857.8484 9589.9391 6493.143 7423.2931 3467.6333 10813.7143 187923465 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 21002.0493 24224.1407 15610.1794 17412.2659 9158.5728 10844.8488 6001.9315 10793.9879 22346.4435 9237.0893 310957.458 10816.5834 20797.8904 21462.1517 6483.5626 6483.5626 9116.9116 22123.6876 11589.0987 7954.2539 13977.8648 9845.2122 12598.9196 11427.2495 12970.6975 17883.4105 64952.569 15417.2336 23876.1704 10191.6844 13095.3009 19496.622 6520.8603 37847.0635 350530045 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 7302.3674 7113.5945 84216.4457 12487.1897 3877.2682 7384.9883 13162.6173 76943.2514 7777.6915 5332.2122 83513.7093 29009.1213 29009.1213 3594.3105 28862.5147 8025.2519 7126.5275 13096.3082 4263.614 8439.1938 8224.5125 82606.2998 16447.0734 24013.3551 12841.3666 15505.6383 5336.9301 9147.3863 35081.8141 296284999 badh Organic Remediation Aromatics Other aromatics Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 17697.1361 3000.7766 9818.7572 4033.5756 37870.8649 19771.1787 67186.2944 17295.6865 6120.3939 15807.0844 6172.3236 6172.3236 4322.7788 23121.69 6904.75 14029.3614 107805.7065 4292.9073 9495.8555 10101.5701 7058.4851 7974.7465 35029.396 24452.8005 20261.8387 4912.3505 8200.7676 20530.6923 7625.3318 11769.3509 170937098 rgh Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 60638.8055 163930.6305 10739.7518 4431.0179 2955.176 5694.3543 10133.1084 6188.7524 164512.168 5086.5466 11581.5838 13091.2677 7920.4532 7920.4532 5889.7307 16734.6746 8607.1154 9592.8694 11676.1282 13772.9214 9069.1847 3584.918 13568.9851 12473.4646 18521.6704 13451.41 15448.936 7573.7524 7456.2178 6010.0623 6485.329 14061.0586 378824211 tktA Carbon Cycling Carbon fixation Calvin cycle Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 7159.408 64016.8126 4193.3252 33564.968 6218.919 7047.4782 7097.2254 8619.7338 7452.8436 24876.0963 460470.6539 13820.0863 12859.5155 21802.2881 32106.1927 32106.1927 6377.4652 16758.5836 6187.6146 9629.5595 23749.6045 5612.8112 5631.0664 9115.7385 12364.6755 6431.523 22781.2781 15062.7505 14298.6613 6360.3625 5088.4869 13101.5578 162205.252 9522.0847 150837977 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 3834.9487 3447.4104 4759.4184 12811.2186 392956274 amyA Carbon Cycling Carbon degradation Starch Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 8353.7806 16747.2135 3480.0991 5873.8201 3751.8317 85520.4151 10325.6708 17999.4589 6240.5409 9323.2782 3127131 actin_Viridiplantae Other Phylogenetic NA Scherffelia dubia superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;order:Chlorodendrales;family:Chlorodendraceae;genus:Scherffelia; 19055.6688 13361.3981 4309.5079 9619.512 16861.1586 8991.4312 12104.7976 12708.8342 19182.4868 23634.9991 209075.6478 18092.2258 11833.6789 11383.8839 27812.1457 27812.1457 6979.5878 28937.1021 15334.7746 14344.2059 23725.4109 20128.0633 6782.3167 13305.2886 37142.2856 8982.8632 31056.2208 116681.4537 57436.6828 11401.4471 19190.3332 17922.4229 6450.8485 16394.7962 iegAssA14 assa Organic Remediation Other Hydrocarbons NA NA 8683.0921 3913.1894 5174.1905 6103.5989 8003.6485 107628.6778 3862.7056 3862.7056 2989.7731 6062.1126 8177.7544 39264.7012 2389.2963 10262.488 2112.9075 3733.9139 4763.8155 4114.2648 214044219 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 210707.0092 14410.6941 26183.9883 65203.487 14977.8636 26920.032 70113.3581 29712.5324 25669.5144 30091.0471 40678.5551 3078806.3269 43390.1684 99025.0005 67519.3971 46195.6146 46195.6146 51212.4743 85455.4294 17281.1398 216555.1578 72620.4232 134532.3824 28111.5976 30425.9808 36988.2319 21713.4171 85690.2945 31823.0407 59678.3385 14230.0623 36857.9022 65327.9578 25208.8532 18719.5609 221200744 linc Organic Remediation Pesticides related compound NA Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 6660.0268 5936.8677 6723.4315 9650.2872 5558.6508 5087.1903 3755.6228 13229.8643 30333.9656 4715.0781 145409.6899 7772.7846 8244.9598 23475.5005 10833.3641 10833.3641 4698.4803 14109.6043 9238.6768 6937.3565 11185.9134 184187.8014 4318.0115 4061.0643 11396.2763 4052.0976 18738.9769 26382.1916 15052.7282 4651.5244 10587.1224 6671.4127 4496.2967 8361.1255 307772275 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 274132.3857 16824.9207 16109.3388 12344.6951 316288.3827 97679.1429 98070.0559 7570.0209 8665.1545 12882.0134 6615.7562 246002.3274 45243.7519 35915.5919 8477.1339 8457.7896 8457.7896 7138.0739 56248.0849 7717.4617 28109.6427 21922.7519 15138.7805 5828.9849 7098.9152 20566.6289 10572.2452 27244.9294 16962.5399 22204.0745 8196.8215 7483.729 16150.4974 8727.3686 24474.426 380692170 mcra Carbon Cycling Methane Methanogenesis Methanolobus profundi superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanolobus; 19311.7016 9883.3778 13684.6987 20223.6284 7959.1868 43941.6686 12192.749 8849.7743 11347.2075 59832.541 195437.3891 12612.0144 9084.8944 4927.5121 4927.5121 9029.8732 39843.6934 18668.6297 57546.476 28794.4904 14622.5584 77798.0278 7798.424 12491.6626 8642.1955 24380.7303 11975.5476 17341.9645 11408.8629 14528.6371 19627.7831 6938.8945 342151.2093 13815939 sqr Sulfur Sulfide Oxidation NA Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 7410.1095 7339.936 10337.5718 5296.5688 6930.3071 4141.3323 8593.0602 6947.2418 14540.1934 121592.9013 6477.3372 14176.5858 6907.6331 4342.6663 4342.6663 6573.4688 12921.2846 7114.4594 68702.8595 11714.0392 11625.14 4294.2068 11212.1729 11500.9477 4724.7951 16438.7465 4730.5574 12020.6609 6413.9598 7789.5622 6448.1132 3927.7599 9298.8442 84393644 ppx Phosphorus Polyphosphate degradation NA Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 8381.1299 11136.8079 4805.8964 7000.0627 7042.2359 3724.3887 5982.5234 28712.5849 134814.2916 19340.9463 6808.8351 5895.4297 2764.2956 2764.2956 10502.0967 10468.9167 4986.3797 145519.3321 9580.0749 38307.3135 3206.4934 7681.2454 12805.881 16789.7228 14599.5709 9750.4987 5786.9646 6242.1979 7437.7105 15928.2054 22804.2151 56684776 cmua Organic Remediation Chlorinated solvents NA Aminobacter lissarensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aminobacter; 30162.8555 25884.392 25878.7953 32110.0685 4727.8159 64866.1212 36115.2682 17674.6238 43646.2743 259595.9807 19622.5875 1099666.2758 25173.3656 36533.0387 24335.178 20522.305 20522.305 26221.5785 52796.4682 33736.1867 52653.9105 48506.301 39564.2892 29881.0711 31324.4868 47121.611 57435.6778 76503.5618 34361.3129 43141.5089 24950.8471 24057.691 34125.0208 18970.0753 37860.5012 359822543 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5438.87715 4884.8375 12384.06315 3216.9847 3587.4666 3254.1933 6586.85185 2851.7944 151993.56125 6384.0582 5281.66995 3480.2537 3480.2537 4742.69025 9141.511 5241.31895 5497.6982 5567.99935 5910.09535 2906.1069 2977.9505 9175.0843 2793.9371 10170.1638 6594.825 6968.0489 4153.41165 4007.2672 4016.4962 2748.25765 6736.7354 269303901 ara Carbon Cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 136110.5305 27653.1481 55271.3696 102925.651 21661.9836 38179.9272 43726.4125 62422.5773 24349.1812 46625.7197 34501.7402 651127.9589 47154.9163 36224.8942 41721.1804 49106.1561 49106.1561 25174.3001 49710.1362 33953.6755 63691.7483 54981.2537 72815.8475 33743.143 24313.9789 32582.7531 71882.3743 74626.671 58495.8136 59917.3733 27002.3028 45695.8585 27279.2315 20333.4203 51699.5482 355335949 amyA Carbon Cycling Carbon degradation Starch Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 6773.5591 7656.4141 2256.9671 33858.3069 4677.6215 5304.7206 5304.7206 9091.8644 14670.2622 87983.0294 2648.1315 4267.7106 4061.4918 8776.6479 18239.0441 295894931 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 424451.6048 5214.1785 82024.6 11006.9372 15701.1984 18643.3726 26275.3432 9408.7236 12676.5871 9148.4255 185389.9939 10756.0863 39457.038 28534.2497 9774.7215 9774.7215 5650.8349 19302.4797 12423.8694 35114.8659 27987.2516 13260.3373 8925.3405 9328.9547 16533.2567 7695.8188 15743.4557 9486.1196 17122.42 6190.7095 8814.614 12692.1642 9656.0804 11629.2349 91690461 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 986415.7915 33357.2111 318173.4294 201862.3659 1577557.1982 155404.9099 232502.2095 247918.4469 194695.252 226112.4238 231689.3938 173184.6983 5769760.5569 290179.0654 303989.1003 1030493.7748 573801.8675 573801.8675 484554.8854 296104.0922 221954.8064 296131.6617 511267.6212 1116911.9212 456884.4553 263953.2729 349126.4351 258785.479 1125583.457 528103.7744 272721.8207 269248.4919 184306.1173 395601.7567 176115.064 403843.2655 112463637 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8940.8279 7197.8897 37820.5314 11002.8834 7988.4986 11759.1342 2941.9804 6174.158 9415.1961 4974.1644 114930.2036 7058.9493 9881.3043 13696.1799 11426.7339 11426.7339 5659.6062 12509.4147 9629.6518 9100.6634 35813.0301 14638.9369 5134.7404 8060.356 14310.2411 5744.919 60121.8074 11959.5773 17693.5974 5301.398 8364.196 9698.4845 8708.8842 7560.1277 214031971 ppx Phosphorus Polyphosphate degradation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 33806.5158 11625.6319 231653.1728 8981.8164 6111.0862 23619.4609 134363.6376 14308.0534 19082.5452 23264.3164 15982.4791 477531.4491 22357.887 22930.0126 27059.8603 27606.9972 27606.9972 10633.951 41675.7569 24751.0601 19277.5016 62024.544 52512.2319 42357.5951 29142.7933 118497.2954 101155.238 69891.8164 122666.4054 23433.9428 11129.2256 12744.7081 18187.0359 135038.3517 29823.1598 332663163 ara Carbon Cycling Carbon degradation Hemicellulose Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 6984.41 9923.4249 3479.2964 5502.9988 4095.5497 3853.2965 193285.3193 5472.4906 6866.7019 5618.339 4362.8595 4098.7352 14086.4188 6962.751 2287.3819 3958.4863 5936.5795 5634.6916 8064.471 10452.4075 7318.0063 2568.8513 8202.995 2897.0337 2930.3625 6297.9298 315924281 amyA Carbon Cycling Carbon degradation Starch Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 16157.14 10065.2083 9911.3771 21221.3547 6941.4374 9838.3326 5646.2779 10874.5432 14514.5507 6741.0131 184034.6609 52611.81 11931.6316 7546.2279 6362.2343 6362.2343 20479.8408 36105.8509 16415.6438 12743.7777 21653.4474 37764.9046 10068.4085 10205.9347 19984.0825 12322.5193 33018.9477 8141.9193 20994.0564 8536.2246 9349.2535 87328.6208 6027.6377 16618.9548 134301100 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 19540.5327 4156.0202 11055.0466 2254.1683 2626.8286 3367.1731 39513.8555 4105.8331 4105.8331 231934.3007 6511.3754 3850.1788 3947.3687 79300.6156 3142.513 4850.3217 5530.5816 4114.4339 10448.1256 2378.6381 8590.3878 3748.4728 4207.4542 226834928 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 30044.2077 7008.402 3229.7063 8270.2619 9886.2151 4517.2568 342316484 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 43542.8937 60633.9421 81864.2084 6663.5534 25668.5681 52808.4818 27466.856 18321.5031 29241.8046 38629.1671 36170.7893 72309.6161 22374.1478 19421863 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 554671.3582 57575.6871 4311.9672 8975.4072 4390.1547 4408.5666 4286.7371 4468.2445 5140.8107 2450.9285 8870.8396 3480.32 10758.4951 4992.5391 6369.2081 2062.401 3475.56 3613.6414 2636.5609 8966.1974 329962457 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 54235.043 11526.5462 10024.1486 1743.5567 387967488 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 147294.323 70729461 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 12551.409 22546.8429 30833.9873 33277.7895 12402.6284 37592.3742 36495.834 23487.7958 26486.165 23338.0638 29656.989 50951.1736 50007.9805 30026.4487 27342.8581 28915.7186 20270772 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes pubescens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 44166.3458 4025.5481 14450.6354 4811.9951 34281.5837 3761.8949 8048.9463 2558.8613 10698.1137 8594.6202 12176.4162 2409.3066 6342.5899 413939838 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 103966.439 11303.919 4818.6393 6250.192 5726.5144 1800.8197 5595.7259 89950895 rgl Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 296337.0261 2653.2871 5496.9486 3535.0054 5514.6017 2496.9203 2496.9203 4005.5013 6746.8501 3825.9817 15610.7867 12795.8189 4210.9101 8107.8009 4079.2853 6129.9209 10824.89 8092.0467 6342.4558 2750.8964 52711.7787 3749.3885 3005.6485 5642.0764 291197260 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 458001.9309 4419.3572 4384.7191 5560.5474 6144.6637 4126.4791 2244446.8555 12581.0834 4325.4593 5853.4282 3744.4743 3744.4743 4789.2073 9192.63 8583.352 5819.9109 7988.4264 9013.2795 3729.4966 3541.3551 11037.2602 3301.8905 12539.9953 9417.5337 11657.5515 3931.0323 5135.7472 5152.7148 4374.7342 6644.1038 3157532 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 17090.2799 21095.5608 45524.5169 5075.8006 3450.3909 4467.5848 5760.4759 400451.9162 5571.1032 3701.5014 10413.8093 7728.8411 7728.8411 2544.5175 11530.8945 18255.1771 16360.3812 9908.0619 6712.6026 3845.1261 14232.0021 64331.8188 17029.258 11701.7026 6695.5584 5597.1995 5673.8707 62130.3728 12070.4851 385139031 amoa Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 322287.4727 24482.9747 33801.3673 14163.2328 13511.0088 5184.3607 7189.4035 12691.2566 169606772 phospholipase_B_fungi virulence degradation NA Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 26098.9833 5705874 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium cellulovorans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 123448.8086 359755056 cellobiase Carbon Cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 20091.267 319413897 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11321.8698 3596.2805 4792.1673 7395.737 4177.6204 8077.2013 2477.1584 4962.4443 4899.6752 109632419 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31024.9127 13852.3029 65296.0889 4340.3359 2735.4468 3255.314 33340617 ppk Phosphorus Polyphosphate synthesis NA Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 13002.0913 217291.6713 3064.6942 121716444 bph Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 48445.6096 9671.0767 4584.3815 8465.0772 2389.6648 28790.9856 3224.4717 4959.9712 6847.4296 118582.8845 10466.1484 15476.3176 4236.3644 4245.8043 4245.8043 3115.7311 12578.0666 5014.3111 8357.6306 5298.088 3856.2313 7665.3016 15923.1461 10722.1389 13410.5539 12030.1543 13220.0073 3363.8896 6421.4724 8238.1394 4181.7142 388006566 urec Nitrogen Ammonification NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 288957.9865 60391.992 1980.8798 211957429 tehb Metal Homeostasis Tellurium Detoxification Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 33265.1641 192897630 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 12804.2828 70996670 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 14692.1662 17220.3166 4482.7114 4364.7894 195892.7777 6803.5946 3320.8341 3320.8341 2932.9808 8201.05155 3582.3384 7966.95505 5750.3986 3104.9414 3387.0331 5262.2732 5902.30675 2263.8084 3997.2428 3371.1606 2478.8241 6857.9603 260063844 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 21752.725 42524021 norb Nitrogen Denitrification NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 10147.9583 2712.985 5413.2729 2592.9306 90170.1515 6165.6506 4394.9269 21229.6987 4981.0659 3514.8902 3241.6844 14096.1839 2934.688 2621.2975 3079.2708 6139.6285 197713028 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 53795.1099 2416.5871 2175.4217 3788.3954 1994.451 1994.451 3722.3186 4104.7963 2949.8958 5342.9166 364568492 chitinase Carbon Cycling Carbon degradation Chitin Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 12592.1175 1773.2352 2388.3341 4385.7415 57851.7962 4922.5338 2148.7202 84779015 Sir Sulfur sulfite reduction NA Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 10630.814 100600.5772 82958.2833 139371.1509 18200.7317 62229.6604 104743.68255 137653.7944 100622.041 56794.7508 987603.1388 56096.6097 62337.2912 148078.4876 53675.1907 135035.2641 91826.0074 90597.1514 68937.6371 50849.8023 158443674 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 22360.4941 2995415 mer Metal Homeostasis Mercury Detoxification Bacillus cereus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11438.0284 6078.3192 344342891 arylest Organic Remediation Aromatics Other aromatics Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 34896.2192 11102.2649 7631.1484 3157.3132 4491.4059 7123.3773 7199.8682 5356.0928 13423.7616 9964.5694 4842.3682 5433.0876 154019.3849 3819.5679 4519.0318 282570001 bphF1 Organic Remediation Aromatics Polycyclic aromatics Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 20678.8513 6295.2728 9443.6101 4501.2734 2847.0754 3497.5721 5216.4269 3293.1219 77884.4528 4125.8942 4481.0907 4300.0073 4300.0073 2938.7665 12978.1135 6713.1383 5073.5448 16545.7121 4793.9599 55977.9601 3247.4561 7682.7221 3719.8661 28611.5253 5612.8722 7472.3034 2378.1926 4435.6361 3965.2765 2478.493 60320.2477 335881721 cysJ Sulfur Reduction NA Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 19864.2386 311330699 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 83206.1754 2947.4655 3152.3103 5546.2548 4189.8954 6003.6067 11179.1544 4162.9113 6838.3154 1708.8533 2511.1097 3089.7041 149951427 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 14635.8274 156934741 pme Carbon Cycling Carbon degradation Pectin Cronobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 27891.9149 10989.1284 2822.7408 5062.2309 5333.6261 262175.336 12328.1543 16070.3848 3634.3803 3634.3803 5557.5832 21496.2756 4487.2443 7621.6085 3301.3739 6043.2847 7252.3686 12498.1961 11417.9658 8506.7144 6860.6301 8051.8609 3619.8863 7994.8513 229525168 pgk Carbon Cycling Carbon fixation Calvin cycle Vibrio cholerae bv. albensis VL426 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio albensis; 11012.1993 14009.9571 8938.8194 291543738 endoglucanase Carbon Cycling Carbon degradation Cellulose Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 17301.0779 3791.7165 39674.9069 209501637 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11441.9359 2246.8111 99083099 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 16087.3939 90335180 hbh Organic Remediation Aromatics BTEX and related aromatics Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 14655.0395 15381.074 6424.0986 2585.3549 251849312 urec Nitrogen Ammonification NA Ruminococcus sp. 5_1_39B_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 35629.3391 308055993 oxdb Organic Remediation Aromatics Nitoaromatics Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 16172.8196 7509.1054 3631.4069 269102803 mer Metal Homeostasis Mercury Detoxification Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 22080.6786 4174.6942 8009.4938 4900.8979 9043.2109 4133.2056 7294.3668 216852 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 86182.0007 10657.2861 9475.3584 2548.7041 2840.5408 6506.827 78853.6822 94451.7948 3882.9515 3882.9515 3385.425 6393.4358 3903.9186 20255.5074 3229.5541 3197.0406 8281.1521 2844.5736 8734.8176 5229.0605 5281.5206 2306.5804 3603.645 5455.8781 2431.2424 46115230 cutinase Carbon Cycling Carbon degradation Cutin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 11555.3198 3509.7872 5899.906 145477751 actin_ciliophora Other Phylogenetic NA Paramecium tetraurelia strain d4-2 superkingdom:Eukaryota;class:Oligohymenophorea;order:Peniculida;family:Parameciidae;genus:Paramecium;species:Paramecium tetraurelia; 13225.3728 38232613 urec Nitrogen Ammonification NA Yersinia kristensenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 31704.7717 7502.0471 3526.8758 4213.5834 2531.2879 9042.4812 3762.6643 12548.4891 260063171 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 39334.7551 9033.812 3382.2446 8928.1228 2065.5926 4478.917 8198.3774 2754.0397 2754.0397 5701.779 6845.9627 3698.0712 4330.4832 9514.7137 6036.3929 6095.9835 5630.1129 8150.9086 14389193 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20632.0706 5603.1374 7334.0754 226084.1975 79984.3258 79984.3258 2790.8561 6828.4928 4070.1368 375922.8124 9089.8914 7194.3506 3886.8359 323396598 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 14013.5374 148252823 trzn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 25393.0837 1693611.975 7680.0668 136016.1213 11680.5221 2927.4645 51800.5825 5480.0403 5065.8064 2816.2264 3458.2597 4019.6247 5942.5476 5206.947 2587.3906 1942.4837 3756.0783 3122.1331 159488550 gdh Nitrogen Ammonification NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 1241055.7225 17926.92145 15584.7499 26881.3558 44093.57695 90307.18455 22375.1202 24614.17815 51474.2581 51474.2581 48484.8233 19576.7303 27881.75605 28818.79675 37623.43155 85921.66145 45751.8653 44885.44935 25471.2991 25948.18365 16649.2304 145046581 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13499.4456 5127.1257 2560.5109 11035.4681 88818058 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 17401.3116 378764249 mer Metal Homeostasis Mercury Detoxification Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 603801.8595 13959.7838 6976.8028 30749.5518 2386.6072 84974.4879 33120.6212 3743.2839 20928.7313 3594.2547 1389022.5837 6896.6529 5836.3345 6862.8992 3327.2881 13124.1716 3392.7283 13196.1444 2316.8448 4949.8373 5969.4084 383802374 terc Metal Homeostasis Tellurium Detoxification Ignavibacterium album JCM 16511 superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 16991.5854 6747.182 70990.6276 4424.8989 5696.4384 9017.784 4309.3959 2706.5397 8665.0474 4716.4359 15081.6579 4791.6183 3007.7919 4370.1819 2342.9386 343802337 TIM Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 36808.1004 2760.0176 18809.5442 2732.7925 8029.8256 3942.8626 4906.9904 4175.6786 9582.3831 5702.3696 329964270 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 27910.1132 7434.6953 7944.76 3171.3518 145404.7229 2096.7713 2096.7713 6341.8976 10078.3598 4566.536 196482322 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 20560.5165 5161.619 8529.2622 8328.9747 4069.0852 14754.3142 8265.7124 4604.8185 7357.4198 7296.8218 74403.9339 8441.3915 3645.8765 2649.9734 2649.9734 3120.1228 14876.4813 6029.4449 7110.575 9905.4575 5754.1227 11576.2831 7321.4199 4071.1589 11142.9513 14206.2704 10791.0672 5299.6948 6309.529 4583.5958 5181.0745 38669.2603 116180228 amyA Carbon Cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 29049.3804 303090.6965 332372402 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 61405.7981 6755.6835 170938102 pcpe Organic Remediation Herbicides related compound NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 15034.2675 3222.7476 126652053 cysJ Sulfur Reduction NA Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 10991.8888 31074.0936 2969.027 4129.0571 5383.739 109816.4127 6900.1318 2883.9593 7917.5835 4806.3044 4289.0828 7038.0287 3187.6837 7532.8542 4147.8792 3494.8481 3099.1461 14362.0197 326635601 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas sp. 206 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 79320.7692 2155.496 3211.4554 3211.4554 4390.281 88794714 merb Metal Homeostasis Mercury Detoxification Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 13322.0693 6141.5618 2270.5597 3383.3558 16452.6876 3724.0239 75123.5031 4805.6292 8186.7979 3645.0823 3834.3288 11619.9077 3948.4695 2212.1951 5833.945 3106.9444 9760.0744 6450.9408 1913.2806 3030.5547 3187.8448 23867901 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 14066.6602 3078.0398 60475990 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 42693.0704 1166403 amyA Carbon Cycling Carbon degradation Starch Xanthomonas campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 12450.7129 5177.6794 3249.048 6040.9766 3982.3776 6081.3582 28542621 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14815.9682 340553605 xyla Carbon Cycling Carbon degradation Hemicellulose Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 17339.08 5764.1864 9610.0748 422314479 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 785198.6556 169690.9139 146292546 linb Organic Remediation Pesticides related compound NA Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 25272.0582 342810533 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 32454.4905 383353264 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus mitis SK579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mitis; 1488498.0244 469873.8261 31795.1889 218128500 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 675738.3898 109452390 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10535.7821 240278619 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 52829.15 56539.2158 112362.4543 21076.3171 29883.0081 61804.0652 118253.4258 68832.8504 894140.9382 50937.2189 68081.0115 68081.0115 33675.6484 45328.6065 46518.8341 67538278 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 15511.6569 4238.0369 4238.0369 7818.7813 354582973 cysJ Sulfur Reduction NA Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 18395.758 6891.0468 299816789 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 15863.4018 3875.4456 6595.9198 64353.7138 6236.6852 83723753 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 23542.4689 32228.19775 12219.55945 357941879 mer Metal Homeostasis Mercury Detoxification Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 16617.0167 2801.232 3894.5796 3454.8016 1955.7886 1955.7886 12863.2373 4073.7981 2651.1406 3260.3042 26680.3233 4224.0919 6137.4613 2204.8282 3288.4707 2767.5014 4738.7973 113871774 ppx Phosphorus Polyphosphate degradation NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 11715.172 2251.3113 5271.2754 4963.8596 4537.8279 2961.4843 2961.4843 2489.0167 4594.6585 41772.4584 3680.8742 5628.0481 2362.0762 10139.1279 4576.4044 7147.0832 14338.2289 50084861 cmci Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2228955.0372 100259.7633 47293.7242 7091.0352 11302.2708 4744.6838 2256.1128 2256.1128 34989.2243 116180.4479 6285.3772 2886.7474 6514.9528 7181.8855 8680.5315 7623.7234 7807.5685 7299.8121 7513.9655 12596.3919 2912.2119 268053199 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 230393.8994 71082.4671 7570.0108 5280.7965 2761.0425 2182.4788 3389.053 4577.958 6194.6959 4381.7735 3453.3648 9141.9553 7159.8483 6534.5247 5032.3164 7059.2532 2831.1586 11310.7378 6141.1292 5856.2794 3761.5119 4272.0823 3551.8365 8181.0957 281300901 cda Carbon Cycling Carbon degradation Starch Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 23690.8006 4289.6757 255692851 pula Carbon Cycling Carbon degradation Starch Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 16770.9376 4635.8531 4537.4552 2613.8366 422314253 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20416.7742 8870.6874 299140842 amyA Carbon Cycling Carbon degradation Starch Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 11683.2583 5895.3653 12119.2085 5271.3791 3203.691 4232.2729 5269.5001 2516.8046 2516.8046 6279.1402 5280.9788 3678.7269 3338.5263 9407.5769 5392.4634 5536.8889 1758.6308 2970.4193 3212.796 4656.8428 14495292 hdno Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 31359.8962 19617.4355 15120.8128 4052.3871 17430697 xylc Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 13947.3662 9441.3263 52944.4135 3031.0018 3524.4547 26491.3203 3309.9686 77309.2277 4129.0802 7740.1238 4998.7252 4712.0367 4712.0367 2956.0851 6098.7324 5297.6398 21516.5066 6459.3987 3080.2814 3480.3561 14904.1281 3206.1214 9868.0663 13843.3041 10399.6521 5534.7888 3444.2727 4130.3787 5121.6206 9688.6326 320593888 chnd Organic Remediation Other Hydrocarbons NA Grosmannia clavigera kw1407 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 2367968.2562 654351.4542 7956.6279 12259.1743 3800.8507 59153.6729 10637.7101 7362.2669 4272.1276 5412.8117 1973.936 3457.3292 2845.1661 32866.8473 158514476 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15645.6901 343502203 arsc Metal Homeostasis Arsenic Detoxification Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 966341.525 157911563 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 1317311.2218 333062.7529 6203.9192 2772.9946 16251.04 219946402 cysI Sulfur Other NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 25689.075 13961.53945 33214.1036 9919.2654 8948.0757 5391.70245 19912.4111 34966.9899 25399.06515 308741523 b_lactamase Virulence Antibiotic resistance Degradation Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 21487.4098 102166.1421 66695.9156 353209430 tktA Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 907968.5858 246459.1753 4321.4903 7876.7309 15258.8436 61678.4644 5249.0515 4135.191 2789.6032 4892.964 14662.7454 8354.499 3303.9793 5034.5389 5349.9621 50877929 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 21352.7984 365867393 badh Organic Remediation Aromatics Other aromatics Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 153125.5683 159516.9621 25491.7612 31918.1559 78549.2632 3969.5847 2298.1909 110829.2287 4417.9713 9119.1849 4635.3199 9475.599 9475.599 7198.0066 9387.2868 4024.0957 4010.0556 3931.7135 4953.3416 6393.1201 22033.7655 7967.3029 4282.6289 7023.8543 10971.1212 6772.7135 5178.7002 4573.1991 5732.3124 4002.9916 7934.8507 384575785 dsrB Sulfur sulfite reduction NA Desulfonatronum thioautotrophicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 14378.4612 2600.0782 33456984 oxdb Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 79199.3644 6240.865 2567.6862 335346129 pcpe Organic Remediation Herbicides related compound NA Sphingomonas sp. TTNP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 13076.766 3141.8759 256585810 catechol Organic Remediation Aromatics Other aromatics Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 13752.3132 5888.4038 8065.2169 5106.3033 2552.6528 262274918 atza Organic Remediation Herbicides related compound NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 14108.4125 18034241 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum alkaliphilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 35056.6231 2153.0122 3418.8866 2668.0099 2899.5462 4490.3753 5440.6441 2498.6637 2498.6637 6926.3526 2430.7274 6483.3694 2696.8416 4575.0896 339512503 gdh Nitrogen Ammonification NA Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 58196.8075 18226.1844 345643755 cysJ Sulfur Reduction NA Pseudogulbenkiania sp. NH8B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 102354.844 4367.2233 2431.9496 147387.1219 7335.1925 27792.0715 9596.5941 9596.5941 4906.2748 343403042 amyA Carbon Cycling Carbon degradation Starch Streptococcus infantis X superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantis; 14329.478 6810.2073 74056460 trzn Organic Remediation Herbicides related compound NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 16604.7014 299575.36 114663.8069 201709.95985 130465.0219 198276741 rgl Carbon Cycling Carbon degradation Pectin Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 12705.9176 2909.8921 3138.1334 4664.6963 110056.7999 16838.295 7874.4349 3888.5526 2138.1267 2569.4458 238496657 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 607911.742 113970472 amyA Carbon Cycling Carbon degradation Starch Shewanella sp. MR-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 13702.4258 311067238 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 16186.2271 389936081 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 114403.3494 93453.3895 31282.9085 3715.5418 78061482 atzb Organic Remediation Herbicides related compound NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11472.7506 94919.287 3623.4672 12104.2133 1942.7582 1942.7582 2439.8313 2541.9196 7356.5798 1995.3837 2875.3897 283814587 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 250078.4093 59759.5497 2664.0438 2664.0438 313896322 nrfa Nitrogen Dissimilatory N reduction NA Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 11851.8098 3628.3797 4059.4918 8750.514 3702.4316 8306.2968 5732.974 2666.5067 4774.6768 264680665 fosa Virulence Antibiotic resistance Degradation Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 11071.5954 1891.4187 4601.1124 90230.2441 4219.0849 2224.677 2224.677 7751.204 9724.2326 2688.9841 3224.5765 11043.6557 8874.3194 6067.2716 6553.7743 12075.2194 9258.7037 5674.4426 6185.1493 304396310 cysJ Sulfur Reduction NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 33148.9031 13627.6345 4724.0848 2737.8991 4917.7667 6913.7875 6913.7875 116345.5463 3649.8676 6536.5611 3672.064 365910225 pme Carbon Cycling Carbon degradation Pectin Klebsiella oxytoca KCTC 1686 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 397839.7275 78311.6326 8385.9549 13415.737 2596.0527 51327.7317 7342.9449 2568.9433 1914.2564 3595.6227 71915004 endochitinase Carbon Cycling Carbon degradation Chitin Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 75211.7982 7256.3583 6929.714 10085.6657 4338.0135 20247.9399 5569.1355 6322.2638 3783.551 93428.61145 4163.2946 22561.3174 14764.6686 3482.3882 3482.3882 3740.4249 7986.2652 4949.4974 4203.824 4157.2206 6337.61335 3801.31915 5698.8764 7541.0827 9470.6969 2352.99175 4992.5007 3240.74835 6834.0733 5981.6724 350267693 cda Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii TU-B-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 15083.8323 10316.8363 5943.2364 2297.813 2650.7341 5868.7814 4770.4581 63545.3394 4119.1991 7560.3167 4376.8568 2860.5403 2860.5403 6014.7893 5670.6623 6520.9737 2594.3 3629.411 7761.3038 2620.1584 10710.1294 7378.8403 7368.9488 2554.9377 3912.9221 351595430 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 15664.1891 9620.4114 422313979 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2678410.717 715469.8142 2895.9502 19000.6212 3176.5427 3182.6841 45011.158 340356254 cysI Sulfur Other NA Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 12724.5658 364570364 pme Carbon Cycling Carbon degradation Pectin Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 21288.4799 238484013 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 12233.6786 64460.0436 2387.1988 1977.8443 39976023 nitrate_reductase Nitrogen N Assimilation NA Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 16187.8342 47749.6816 190025.4324 18680.2121 228308.3671 187207.4076 128558.9033 119758.95625 163962156 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. 12C03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 15347.5141 18762.3399 9765.576 11096.2174 5156.4523 7432.8997 3469.088 3454.2243 345878703 nirs Nitrogen Denitrification NA endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 16162.2899 12055.6914 16695.6679 8567.5221 73136.1097 5100.4442 3709.3021 3284.8486 3130.106 7599.3875 3184.4402 16193.4543 374574603 pcpe Organic Remediation Herbicides related compound NA Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 33163.3828 9303.632 7308.0305 33422.3153 8014.505 9046.466 2742.555 6827.1827 6827.1827 6140.2485 2699.0116 11962.9617 3153.8871 3877.4855 3778.4421 13503.295 323470930 xyll Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 60065.2396 96283.9607 50918.3969 41777.98535 38315.0136 18580.46115 17599.6291 21110.5713 26248.9948 19810.96465 299799162 ara Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 11477.3772 4059.7364 13352.5289 92394186 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 16978.1265 212544942 RgaE Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 22399.8703 2780.7377 2111.869 3417.6636 1999.1166 1999.1166 3825.3388 3128.2702 296888420 pula Carbon Cycling Carbon degradation Starch Gardnerella vaginalis AMD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 695394.3517 14631.7413 332699084 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 55596.0758 6810.4797 4662.702 5188.8804 3107.0345 3107.0345 2641.6067 3816.4977 126105507 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 33594.3458 6018.46 4523.4986 159880154 tehb Metal Homeostasis Tellurium Detoxification Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 13039.9794 156631623 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 13785.1119 3059.5366 229816772 ppk Phosphorus Polyphosphate synthesis NA Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 11770.0469 1799.2861 5200.1949 5007.3895 10184.7724 2763.2484 12571.9285 4137.7753 4137.7753 2861.3647 15217.9383 10298.7654 4248.4086 9771.0466 5545.5527 3445.6128 3288.8415 24352.983 32643.0438 8366.1362 9627.9573 9730.4 2684.4977 6623.0043 5173.1887 40562.4811 5930.7583 126726301 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 19180.1873 212561220 ppx Phosphorus Polyphosphate degradation NA Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 46657.209 2412.9981 2351.5237 2550.0643 5833.1725 3255.159 167591104 ppx Phosphorus Polyphosphate degradation NA Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 14979.4797 4577.2982 400205243 xylj Organic Remediation Aromatics BTEX and related aromatics Acinetobacter radioresistens WC-A-157 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 13056.2732 299740021 rgh Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 13097.3519 9451.3782 89512902 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 211373.9294 6170.2907 5973.99 10566.991 90020238 amyA Carbon Cycling Carbon degradation Starch Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 1125710.0273 11096.1043 353532826 nfsa_2 Organic Remediation Aromatics Nitoaromatics Streptococcus suis R61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 26437.8147 24004.6214 4970.1842 2319.1707 3365.9682 3750.8169 1977.7601 1977.7601 7726.5351 7183.5579 4341.7596 3369.3349 9281.1484 3754.6968 10406.5678 8553.5522 7673.2843 5438.385 4853.3268 302833215 mg_chelatase Secondary metabolism Pigments Chlorophyll Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 16418.4219 16146.33865 25404.342 16208.5537 20092.8599 11327.49545 360769.25345 28472.53705 30144.76615 21138.37595 26964.81215 21680.5805 22725.5497 10406.60435 9948.13185 16993.4826 23161.2678 10794.6333 16012.8023 15542.5487 12654.0398 332377302 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 12930.2565 5065.4477 2733.7178 52600.2577 6130.3266 35843.2757 35843.2757 2621.1155 7388.6209 4081.6273 3422.322 4273.9419 12086.7588 5627.3816 2588.0577 9452.5967 5226.5874 1969.2928 2600.6733 4707.0809 1917.7794 365816641 vgb Virulence Antibiotic resistance Degradation Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 12808.5365 8321.9163 13407.2853 8486.3139 3941.4063 3941.4063 14260.2727 3255.2957 70672933 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 377088.2039 15759.5872 14555.0662 5252.0203 3094.206 4203.9746 2466.0173 5196.1658 5047.9274 18713.874 3726.5554 5830.6305 8700.614 6361.8376 2186.6862 3381.693 3122.8614 8017.8662 5971.6517 2136.3383 11712.2383 4210.1642 6012.8549 148474776 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 23378.139 5419.7917 325497736 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Escherichia fergusonii ECD227 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 74205.9206 9678.3111 9120.5871 4603.8586 171688444 glucoamylase Carbon Cycling Carbon degradation Starch Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 22263.9572 14853.0455 21861.1877 29605.3214 12524.5711 14306.1984 9087.78 16239.9592 9807.40385 26023.6888 16154.0416 37035.7261 11939.5315 30867.13865 9333.6933 12554.3816 13668.7787 36436.9286 218215737 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Eubacterium] biforme; 21627.2653 6756.2574 51858013 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 48138.9698 37955.8364 5635.6767 3035.9539 26130.4289 4194.3199 5386.8926 2854.9073 3146.0998 380693478 amyA Carbon Cycling Carbon degradation Starch Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 51344.4467 7013.2059 3966.1933 11008.7889 4947.452 2090.8645 6130.0657 331970.929 87311.5221 6445.22 5667.9847 4164.6299 3095.6875 3095.6875 2810.3796 11233.8447 4460.1866 4598.7528 2655.4051 3254.0392 8344.4354 20523.7435 11284.4855 4949.3297 11199.9411 3916.1842 44278.5863 7778.5484 3469.1948 119773786 nrfa Nitrogen Dissimilatory N reduction NA Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 40102.0682 11415.9867 2279.7625 5355.0526 2062.876 29600.2483 3545.0004 1939.3805 1939.3805 16890.9452 4782.1675 3729.2326 3509.8542 97268.7899 6341.3478 7162.6825 36174.8379 15262.9588 5936.7733 10442.9233 3249.3331 2348.0681 4974.9281 268325896 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 19101.2159 4713.9418 5711.5829 253579652 amyA Carbon Cycling Carbon degradation Starch Ruminococcus sp. 5_1_39B_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 488316.2433 2628.5616 11442.3028 377565094 amyA Carbon Cycling Carbon degradation Starch Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 13036.2766 6283.9767 3931.1343 3393.084 6652.7215 4573.3177 4573.3177 26827.8312 5372.6467 4056.1998 1888.5792 4389.0962 2675.7629 10249.8614 386406162 hao Nitrogen Nitrification NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 22076.5295 6312.0664 333461887 FBPase Carbon Cycling Carbon fixation Calvin cycle Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 95550.4486 4394.1158 17841.1778 4849.2334 4849.2334 5045.4979 9947.6135 11769.7632 4024.0144 10887.4067 2777.7444 7311.7037 325577817 norb Nitrogen Denitrification NA Haemophilus parainfluenzae ATCC 33392 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 12601.8244 119486353 FBPase Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 636493.4832 386272104 urec Nitrogen Ammonification NA Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 43282.6791 5017.3948 6110.3703 6824.8954 5303.967 2072.5084 4196.5894 4233.3453 2184.4579 8311.7812 3214.5113 5108.3328 294141195 napa Nitrogen Dissimilatory N reduction NA Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 19270.255 383781182 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 478397.7849 2522.603 2350.6633 5075.1634 4083.603 4705.3124 5382.1944 3090.8659 3090.8659 3906.5464 7332.4692 8031.0161 2497.0352 31371.5564 2043.4979 8678.9565 5084.6952 2301.2025 3311.5615 6053.6634 4288.7508 6596.0791 215421978 amyA Carbon Cycling Carbon degradation Starch Nostoc punctiforme superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 1905014.0091 60710.4128 9524.3437 3002.8396 7112.1926 2305.287 7917.7395 6755.5924 14145.8752 103811.4434 19266.0158 33335.0526 9929.661 3725.0701 3725.0701 17949.8898 100256.967 8095.772 11581.9991 6792.6552 3008.5129 10964.4239 6654.0133 3507.6058 25947.8561 15456.9709 13298.4624 9357.2579 14521.7665 12921.4872 48807.2633 6930.0385 154086784 ara Carbon Cycling Carbon degradation Hemicellulose Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 498316.4174 111879.9239 2604.0856 11828.0279 6451.887 4213.0556 2342.0197 2342.0197 2517.4196 5909.8055 5676.2742 3693.2413 2346.9128 15051.5353 3628.4962 3160.6283 3191.0043 12527.0066 158309634 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 2438091.1518 36422.6661 52615.2751 33320457 dsrB Sulfur sulfite reduction NA Desulfofustis glycolicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 10873.0633 3686.2597 2650.1792 2650.1792 19786.0004 5828.8766 330859807 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia enterocolitica W22703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 14755.4476 372454089 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 857896.2184 46389797 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 16588.1853 222086184 xylanase Carbon Cycling Carbon degradation Hemicellulose Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 388733.4713 7876.5775 2468.9039 3100.7802 155354.4287 6190.4618 6770.3978 6275.5542 6275.5542 16075.59 7324.9276 3567.1503 5613.8574 2245.6914 5030.9283 3127.7972 225045466 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 34582.5512 9230.0299 2783.8439 4452.342 5350.6499 3029.3036 6993.3319 5996.8361 11757.4586 6192.5048 2986.4804 3106.9013 6561.0363 7255.7782 3536.0157 121700306 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 26183.9278 42842.3402 22040.7047 43072.00745 33020.06405 55926.41055 67933.5441 40263.8637 40760.0221 26589.57895 34984.3955 254510319 ppx Phosphorus Polyphosphate degradation NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 10682.691 8852.6391 9386.703 7765.2867 6797.2756 4255.7184 2122.3841 11307.4505 5851.523 1857.3733 296314093 ppx Phosphorus Polyphosphate degradation NA Neisseria polysaccharea ATCC 43768 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria polysaccharea; 18793.1567 15029.8122 4264.9586 41511.1851 33643.8852 5518.768 3698.0914 3772.8128 3471.9612 107146.254 15527.4067 5439.6138 10751.4464 7824.7196 7824.7196 5453.9304 3466.7774 9100.8229 3091.3988 13454.1566 5595.995 5903.0686 8267.546 2270.9113 6491.9589 256751061 cellobiase Carbon Cycling Carbon degradation Cellulose Thermoanaerobacter ethanolicus CCSD1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter ethanolicus; 21019.3882 9152.2964 5001.6726 322368875 chitinase Carbon Cycling Carbon degradation Chitin Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 95610.4919 5542.1907 2206.7373 4579.7804 11382.9259 4252.6869 302657364 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 15960.3942 40121.8681 28191.6821 85442.1471 15942.8098 88328.6267 335876.8627 31670.1586 28276.5389 41500.1991 42642.2419 51385.251 38283.6513 32406.9984 55611.5221 63625.0192 24177.4464 21206.4614 38621.8895 365894145 SoxA Sulfur Sulfur Oxidation NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 21165.1177 119409777 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 22286.2957 83317086 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12690.6185 232668.3698 4521.1113 6502.6775 5268.0018 2990.1494 10151.8367 4271.7963 3356.3903 4282.9529 6719.0147 269121406 amyA Carbon Cycling Carbon degradation Starch Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 19271.9911 357416391 cysJ Sulfur Reduction NA Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 260191.6122 73958.4875 4607.0936 4556.8358 64314.5503 2018.2687 2998.4057 306982811 terc Metal Homeostasis Tellurium Detoxification Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 16853.639 139002987 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 12369.5841 261412893 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aggregatibacter actinomycetemcomitans D11S-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 11008.4216 260612551 ppx Phosphorus Polyphosphate degradation NA Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 20732.2277 49647470 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 15955.3235 4717.636 5197.2552 2475.1801 6611.425 5162.0412 6240.3657 4322.6316 3419.6957 4148.7719 2771.4673 6337.3037 307727456 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 48788.698 12317.4331 26329.4788 11473.752 3404.165 2164.1289 4931.765 4485.4529 5542.2351 8111.0552 5582.286 13902.295 13902.295 3615.9773 13982.1086 3366.0603 8476.8682 1639.1451 6633.2567 5006.6892 2534.1769 302847363 nitrite_reductase_protist Nitrogen Assimilation NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 19709.3213 2301.433 54309293 mer Metal Homeostasis Mercury Detoxification Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 27282.1034 9070.1774 5422.7493 3679.5649 2190.7148 3872.9045 4321.1905 68796.8889 5570.3983 8619.5215 7687.2248 2473.7358 2473.7358 5482.6696 6830.25 4757.4315 8976.1408 4840.2665 2776.4311 3369.2735 6518.5093 4000.3918 12507.866 6301.395 7153.1313 2370.2638 4590.6849 5373.9679 6364.8352 9590.5491 326793538 cellobiase Carbon Cycling Carbon degradation Cellulose Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 13427.7693 170101488 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 22217.9733 11316.2692 2324.0412 88377.4909 39086.9973 8176.2773 1532.3857 11360.0328 36307.9608 17936815 ara Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 26296.425 7250.6991 6897.2297 2715.8555 3702.3376 2666.4159 127868.4364 4282.8957 4975.7613 3670.9545 3670.9545 4912.8428 9049.8721 5944.715 6998.3328 2414.9197 7636.0339 5879.5013 7230.6808 31326.1786 4035.9654 7589.6328 4572.9197 2621.037 9815.0593 4665.5285 6446.7947 54302695 pula Carbon Cycling Carbon degradation Starch Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 25707.9482 409395425 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. Chol1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14236.9238 7699.4824 3798.6953 288553559 arsc Metal Homeostasis Arsenic Detoxification Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 550038.9099 115294.6385 11912.6525 3441.5528 7171.9988 10971.0393 208936504 dsra Sulfur sulfite reduction NA uncultured prokaryote 172590.3259 39649.6462 5779.6521 9332.4135 5749.3785 2456.9549 2456.9549 2821.1672 14373.2266 4742.7362 7051.0917 10781.5336 6192.2767 4845.2064 3569.9852 59418.5264 8906.3499 326414499 poba Organic Remediation Aromatics Aromatic carboxylic acid Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 11216.8833 7614.8629 7614.8629 86142289 ara Carbon Cycling Carbon degradation Hemicellulose Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 14644.5196 2500.4088 3313.7323 3706.6155 1630.2676 5814.8232 374333972 ppx Phosphorus Polyphosphate degradation NA Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 84219.7568 3698.7945 2313.3823 2313.3823 3859.3577 5215.5157 20514.8668 2148.8366 8043.6734 2052.7295 3843.1544 5148.3397 115396398 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 13855.7465 5290.6667 2982.6902 4952.7068 397698210 badh Organic Remediation Aromatics Other aromatics Pseudomonas putida DOT-T1E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 30432.399 16235.4799 4789.1129 2345.5735 8741.715 3757.4666 2500.7633 71852.4293 5183.5056 5269.8087 1916.4554 1916.4554 6845.597 4352.4525 5398.3628 4734.268 5498.5739 2401.5268 6336.7774 5615.6294 5677.5874 2931.5755 3446.3169 3199.5434 2912.8768 5017.953 229748947 ara Carbon Cycling Carbon degradation Hemicellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 170513.1686 25697.5554 22232.7264 249023.7225 5171.6974 17227.8256 110044.9121 12631.7775 10620.1592 13965.2611 9647.3502 9647.3502 3829.6424 14517.433 8806.5714 5038.6355 9419.369 16538.124 232718.8918 15246.1647 18119.3718 12611.7269 4220.7616 5829.0079 8306.051 73007.2442 335043989 PRI Carbon Cycling Carbon fixation Calvin cycle Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 10766.1176 3031.1639 2783.7047 3139.8461 2555.1827 6029.2914 7783.2472 2633.5735 73762878 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15413.6615 5374.0622 2705.1969 3331.4139 6436.0602 3332.0506 4283.8516 2299.4425 2299.4425 5610.2689 3226.2653 4842.5983 11260.6347 4290.6425 1849.8995 2932.2744 151302345 aps_apra Sulfur adenylylsulfate reductase NA Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 13849.7174 13534.5879 3047.1222 4992.1918 2508.6673 167840552 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 62534.1778 23443.9072 4138.5907 49784.873 49784.873 6044.1158 4266.1165 7218.9655 5404.8481 3667.61 2679.0453 197335093 nirb Nitrogen Assimilatory N reduction NA Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 311708.5785 4895.27 10369.5831 2484.6043 4083.3832 6256.2406 5411.9932 98895.5969 8884.6572 22122.8692 2400.6246 2400.6246 4051.8478 8750.8735 4246.673 6595.848 5801.1215 7437.7143 2590.3004 2411.5899 8114.0019 2194.4459 15056.0863 5060.4054 2810.2358 2725.3192 4043.8147 2899.5906 5183.8691 223714222 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 16411.9997 5173.1625 51229.7852 4583.0417 7538.1335 4054.845 4655.9764 3857.8499 6321.5633 11337.5633 3221.0684 4990.3742 2216.9799 8035.2231 6293.0183 2208.4484 4499.5722 3743.9076 2237.3289 6138.7145 229326315 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 155075.6974 1868.0145 3725.1851 4359.8704 3879.1346 3723.1924 10712.9832 4931.865 4942.9386 2661.5018 2416.7969 5222.976 2328.5565 8776.6677 5615.1306 2170.2298 3929.6071 4518.6576 3813.7975 7680.4795 242132148 ppx Phosphorus Polyphosphate degradation NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 10790.7108 3485.3287 6256.4805 277946.7155 238941.0909 238941.0909 8128.7623 11077.0408 35365.0805 15414.6757 4795.1337 6018.8266 3670.1808 5561.615 2130.9113 10761.1435 146326757 dsrB Sulfur sulfite reduction NA Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 19459.6541 114738118 badh Organic Remediation Aromatics Other aromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 21356.6588 339449364 ppx Phosphorus Polyphosphate degradation NA Lactobacillus fructivorans KCTC 3543 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fructivorans; 127978.5282 3217.1889 343799407 amyA Carbon Cycling Carbon degradation Starch Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 21994.3224 80829.5094 4319.6839 3979.1777 3731.5686 5367.8016 18084.3252 4008.8496 3012.864 3012.864 19719.1542 3584.4282 2966.7907 5124.6061 3530.78 8464.6028 7232.5146 7707.9182 5598.6562 3693.5298 2001.0939 116096219 ppx Phosphorus Polyphosphate degradation NA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 175043.565 4651.6478 5497.2278 2394.0849 5053.2533 3145.4036 3145.4036 33200.3758 2247.0702 6822.1066 3552.2546 4441.6555 3893.9069 224025838 amyA Carbon Cycling Carbon degradation Starch Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 26388.0559 17397.002 3481.9119 294012841 nirb Nitrogen Assimilatory N reduction NA Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 30316.1559 14734.6201 9380.162 2803.9091 5503.7046 7956.2998 4276.4576 152701.5212 8904.2452 2858.5915 2858.5915 18034.7899 24181.9494 5366.58 3175.5275 6442.5084 9214.2906 9127.221 6045.0836 24766.1031 2981.0761 6089.7218 8953.5027 3595.6579 333900249 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 1816159.0167 33629.6609 4720.0601 2673.7533 87098.3579 3438.5347 4105.7286 7279.7689 4715.0346 4715.0346 255781.2351 65657.9568 5984.4759 4406.8467 4418.5961 11204.6988 6272.5766 2447.5285 41504.6307 13036.5659 6471.5941 10820.5319 3917.3616 6840.2391 2213.4852 5142.9518 308445524 aoxb Metal Homeostasis Arsenic Detoxification Acidovorax sp. GW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 22047.4222 33497.64035 380725.2653 41327.6128 407694266 alkk Organic Remediation Others NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 1896738.0027 5197.3803 6780.7054 2737.7931 111900.2843 2807.0659 2807.0659 4343.1069 8544.5792 6655.6459 4585.5713 8496.5824 3644.0118 3191.3682 5949.586 2657.0564 15954.5242 8122.2656 7171.511 2490.4432 3704.803 8647.5333 258577175 phenol_oxidase Carbon Cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 85793.6654 4965.2943 12797.7534 151302135 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio oxyclinae superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 44404.0428 319805063 mer Metal Homeostasis Mercury Detoxification Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 10881.5141 2694.0599 3997.165 1937.2243 2386.3964 371990850 rgl Carbon Cycling Carbon degradation Pectin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1562771.6336 428594.0658 29672.4799 371459208 arsc Metal Homeostasis Arsenic Detoxification Acetobacter pasteurianus NBRC 101655 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 462592.5369 2152.1102 5532.5586 2242.2376 3932.87 5088.2607 7644.5757 3074.2855 3074.2855 9336.4096 5472.4245 3074.5391 9783.8616 5590.1275 6572.4999 2645.9696 7156.7477 3268.8136 2901.237 215398376 silicon_transporter Metal Homeostasis Silicon Transport NA 11932.0358 2343.9242 7453.2949 4569.2715 319403356 tktA Carbon Cycling Carbon fixation Calvin cycle Bartonella clarridgeiae 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella clarridgeiae; 21355.5502 296426343 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11323.1039 8811.0641 4286.491 10960.5985 3090.3423 3090.3423 8021.8433 5079.6734 12989.646 2414.8598 5240.9751 827653.3151 3542.8229 4106.4971 6008.848 94471189 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 835281.8196 219605.6663 2910.6012 4910.5623 3766.1694 4123.9602 62228.2149 4402.1459 3427.9184 5456.1655 3997.1905 5020.6976 5054.9971 3995.6739 3815.8702 2970.8491 9002.9572 2889.2557 9444.0384 2983.4623 4897.9459 3195.1943 2652.6337 5984.4655 374389735 amyA Carbon Cycling Carbon degradation Starch Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 2717931.2229 50754.3785 7375.2998 8428.3398 3821.6345 68162.2042 5449.9857 5449.9857 24388.708 70226.8563 6667.7823 5055.9801 5980.6334 6194.5224 23323.8266 27179.8198 12561.1453 11795.5404 2866.5859 7716.5919 102923.1646 6473.5885 302385889 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 34047.7208 284015962 arsm Metal Homeostasis Arsenic Detoxification Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 23354.4657 5956.537 9164.1051 9761.4438 288229.6569 10504.8425 9945.523 5745.19 5745.19 15439.6025 2573.1737 12717.6245 2216.9444 4858.6142 6666.2228 383777039 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 28870.0902 9786.0545 2602.5858 10160.4332 3362.613 75729.2796 4807.5677 5248.3862 4710.8871 4423.4044 4423.4044 2868.3789 7759.6238 4544.3855 7533.4996 9475.5643 18052.4299 7117.3074 9981.0046 2952.7463 6553.4581 5132.2477 332305161 arsc Metal Homeostasis Arsenic Detoxification Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 14961.8963 2510.3603 67008.8482 7261.4111 10079.3642 4387.4199 4387.4199 7954.6906 4386.9978 5968.9058 3271.963 7903.0069 157804724 aps_apra Sulfur adenylylsulfate reductase NA Chlorobaculum limnaeum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 272055.9277 4970.3565 86292.8781 315251823 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 20390.9044 4103.8973 374336436 ppx Phosphorus Polyphosphate degradation NA Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 15069.5251 12708.8498 167571928 phn Organic Remediation Herbicides related compound NA Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 20101.6787 5464.6735 4834.1991 4643.3946 11275.7033 87047.0523 2880.3423 2880.3423 5610.0889 2726.0644 4293.8708 10616.7914 4150.1404 5603.6747 2223.2988 4072.9287 2411.015 119401331 invertase_fungi Carbon Cycling Carbon degradation sucrose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 20717.8344 3466.0722 7669.6707 26975.3941 69171.6133 3486.6177 1934.4303 1934.4303 5182.4629 2242.6204 2613.8974 11083.7111 3163.1574 315647384 Sir Sulfur sulfite reduction NA Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 23531.8603 365970067 gdh Nitrogen Ammonification NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 61318.9373 7033.8232 4894.262 3490.6665 113609.517 4542.9798 4542.9798 3103.1676 13629.0214 5687.4549 383108508 ppx Phosphorus Polyphosphate degradation NA Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 10360.4585 356459907 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 13802.5584 4695.7768 2879.7036 7118.4306 4688.9159 3079.4292 359427923 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter sp. NBRC 100985 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 12602.3565 321144679 nfsa_2 Organic Remediation Aromatics Nitoaromatics Streptococcus peroris ATCC 700780 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus peroris; 33093.9508 291295500 amyA Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 14305.5767 35880.7248 29025.1926 27693.5426 15640.6577 23226.07855 42629.1841 29464.927 14707.4586 30130.5189 31894.4303 88418.3335 59788.8292 45776.567 11172.8081 258544495 terc Metal Homeostasis Tellurium Detoxification Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 12840.0002 2665.6184 3717.8379 19168867 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 869966.2184 2321.7627 2782.583 2002.6771 2002.6771 10218.6454 313498698 alkk Organic Remediation Others NA Pseudomonas putida BIRD-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 12217.715 3094.5965 2286.9298 6643.4002 5438.1434 2051.9469 2051.9469 4844.9069 10020.2554 2135.6334 5370.2754 4033.3463 2460.5251 3103.9126 4331.0292 2575.0775 4333.4016 78220266 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 24953.7033 297197361 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 12101.942 56437.4093 34142.7014 2611.6482 3243173 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 15111.2088 9781.2123 4030.208 3538.0607 66981.0494 4071.2578 4151.3374 2757.2068 6322.7511 4170.2185 5940.5457 2614.2296 6150.5751 2073.2174 10862.4123 3668.1226 5800.7418 3440.9114 3595.2296 3190.6505 2330.672 6151.6847 338214728 arylest Organic Remediation Aromatics Other aromatics Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 9964.761 5197.3795 4629.3895 2011.7164 4235.8959 2808.9474 7996.4501 5214.4647 7845.1221 2293.5222 8242.7102 386336893 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gallolyticus; 16446.4033 57014.5954 373856318 arsm Metal Homeostasis Arsenic Detoxification Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 20455.3556 2172.8489 6481.5006 4095.5066 340555385 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 12638.4815 10919.9713 5554.2053 6318.263 3552.3372 3333.2917 5538.0062 377574948 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Mobilicoccus pelagius NBRC 104925 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermatophilaceae;genus:Mobilicoccus;species:Mobilicoccus pelagius; 16895.348 5587.5083 3209.3606 4803.9583 4578.8784 6076.1071 5232.5511 1977.3986 3194.4178 5145.7344 32308033 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21403.7734 15322.7807 4164.3584 6156.8895 3965.4071 8196.3941 3912.979 3977.7468 8281.1045 3547.2702 209486343 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 11597.8764 2843.9024 3830.4463 2149.608 4489.911 4561.5695 3178.908 4630.2246 7101.2469 7658.5206 2507.1426 7998.4724 5068.804 6549.6086 1735.921 8079.1799 3609.2577 37651313 nahb Organic Remediation Aromatics Polycyclic aromatics Xanthobacter polyaromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 14154.6508 114512.72783333 135556.5323 17213.7528 119975.1556 71161.5703 25935.5524 37860.7368 63273.6361 75179.9141 37402.4593 90552.6654 103102.1073 30628.703 53953.192 52207938 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 19966.0876 20075.6089 2315.6624 6681.0086 166005.6839 330919551 glx Carbon Cycling Carbon degradation Lignin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 197835.1028 7457.4156 3066.053 381188840 amyA Carbon Cycling Carbon degradation Starch Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 87201.0436 4438.4596 148982399 chitinase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 15203.8468 28367.8917 26527.2632 11936.4487 11401.5843 29924.6419 63328.2395 29153.9898 29153.9898 91435.3335 27425.8899 26382.32735 47008.5804 307725881 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 31390.875 5750.5132 2681.704 4975.2293 365825342 amyA Carbon Cycling Carbon degradation Starch Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 13533.3581 220908796 rubisco Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 42423.5977 21889.1153 2691.7806 16791.0846 4057.053 145556223 exaa(moxf) Organic Remediation Chlorinated solvents NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 1489352.7253 4926.9333 14875.7354 15652.5517 18341.7132 3717.646 16325.5288 2010.9772 5199.3024 3619.8858 3619.8858 5046.5719 33018.9095 4957.9905 10312.1712 3823.3864 15819.1786 6129.7621 14460.6988 7477.3464 7894.5133 4538.2223 4757.2183 47631.7042 3588.7552 121609529 xlnd Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 10759.9442 19695.77645 52814.715 42517.7186 19304.3105 17270.88755 864835.05285 21620.74295 33654.30945 19879.23365 21710.28605 225194131 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10461.7116 8239.4524 2390.6106 6997.4135 4188.7508 154894.9805 2925.6652 4693.8996 13297.9624 13297.9624 3046.9027 5537.8231 4526.5752 5780.2952 31617.0755 9133.0997 14698.2182 8205.0342 4909.0709 38600.8177 3945.9774 115281469 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 39512.8234 4662.8558 3284.2305 3278.5545 3136.7915 70252.4193 4396.944 4346.1141 2785.0779 2785.0779 6033.5296 11244.4377 4105.0129 3343.9544 2614.3781 18201.8904 1880.0303 2675.0541 3318.7685 18958363 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulfobium narugense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium; 12549.2226 164598138 exoglucanase Carbon Cycling Carbon degradation Cellulose Xylaria polymorpha superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Xylaria; 26813.7831 4681.5543 5129.898 107479.4465 6819.5851 4271.4765 2917.6678 6313.457 7312.9353 5095.2833 5501.4653 1829.8554 3570.9508 2316.9344 927237 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 10980.4458 72162017 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 102714.6938 7857.513 10030.3554 1945.1257 4513.4096 2297.7459 64718.5944 5639.6655 3237.2347 3237.2347 6509.3797 13253.4018 15395.3396 8124.0388 4349.7828 8356.783 9741.1878 18292.9847 5182.7773 3572.747 5858.4946 4763.0436 3297.009 258621810 nfsb_2 Organic Remediation Aromatics Nitoaromatics Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 11297.5657 115421680 arsc Metal Homeostasis Arsenic Detoxification Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 10257.9248 291297276 cda Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 15239.062 46891.4764 125471.8463 55716.736 115358084 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 17422.6332 13555.038 17978.6182 17728.5673 28628.51385 65639.09405 23457.5238 267931.97925 54763.1513 28831.46065 23512.0084 25347.4913 302690834 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 14626.9918 3391.8044 3084.3893 2896.524 54778245 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 14031.8967 3137.9996 4064.6552 2538.5973 7164.1782 6497.6627 10761.9119 5045.3815 4346.004 4008.1945 4368.9533 5390.945 4105.0613 3834.8217 76443552 nifh Nitrogen Nitrogen fixation NA Clostridium sp. Kas107-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 27573.708 300390384 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 16138.7264 5236.3405 9281.9196 4270.9969 2545.4939 2808.5801 5374.2694 8412.7809 2382.8906 84344.1404 5954.8455 5798.5266 2468.7306 2468.7306 3165.4391 9856.337 3746.1425 8650.7182 5239.5148 3747.9062 6379.7227 10662.7592 3557.4332 14434.1375 18174.497 8949.8723 3393.5933 4141.8109 5045.2518 3880.8206 7173.4634 83941805 alkb Organic Remediation Other Hydrocarbons NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 20815.6558 3374.3254 22122.1995 3888.6025 57690.9693 3506.5401 4405.4844 3244.0994 11865.6308 5320.3147 4967.1213 4207.6737 3227.0413 8503.5434 2358.0773 9295.7886 5921.1804 4304.9432 4379.5379 3179.6217 4316.1099 63029739 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1227282.5751 13512.0706 4545.7351 6772.5872 33828.0948 4776.3761 6427.4526 2226.3316 7276.9328 2198.0439 14645.4346 6598.7523 5995.7254 3908.3924 3348.353 2141.2901 84390208 ppx Phosphorus Polyphosphate degradation NA Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 14771.5892 14658.4843 4282.3662 148474820 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 13084.8355 14551.8357 3328.9633 1618.6532 409927169 one_ring_23diox Organic Remediation Aromatics Other aromatics Bacillus azotoformans LMG 9581 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus azotoformans; 15284.0886 11156.5251 4015.0572 2475.8319 3818.0682 2594.5194 61398352 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 18844.4406 2875.5577 2239.1121 6776.9241 4476.1712 12122.2455 3815.9658 2485.221 2604.9171 5505.043 313629171 terc Metal Homeostasis Tellurium Detoxification Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 13008.0137 2324.3363 8983.4242 2585.4866 336295095 nifh Nitrogen Nitrogen fixation NA Zymomonas mobilis subsp. pomaceae ATCC 29192 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 19442.3879 2996.867 4621.1768 11506.1351 73749105 arsm Metal Homeostasis Arsenic Detoxification Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 26919.1117 7664.9188 2297.4867 3642.0339 4179.3204 4418.8491 119424.5188 3953.1071 4548.2964 3985.0156 8513.7731 4616.8345 6878.1314 8079.2514 2568.2537 2677.4982 6905.963 2209.9445 9397.0988 1962.1073 2783.1226 2854.9257 2443.5026 6569.1259 371764744 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 22899.1899 5171.6726 8675.9926 6568.9738 336308919 xylanase Carbon Cycling Carbon degradation Hemicellulose Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 22041.8426 381196180 pgk Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii WJ10621 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 15806.5192 6186.0223 2337.6854 5992.5 164455636 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 18552.0912 91791915 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 40073.2891 388262789 poba Organic Remediation Aromatics Aromatic carboxylic acid Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 13649.6318 3363.453 5565.2178 6142.8716 5789.0192 4282.9315 359775139 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 16713.6165 13798.813 26796.2955 346723290 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas axonopodis pv. citrumelo F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas alfalfae; 11712.7812 167912.4375 8929.9661 15634.08 3085.4563 237500516 nitro Organic Remediation Others NA Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 16347.619 5320.1966 4478.0994 3383.4527 63285.907 4541.9909 3350.7481 2070.636 2070.636 3151.8883 7179.5255 5052.1364 5526.4548 5363.9071 6241.4394 2878.2764 7481.4451 2525.9302 9294.8554 4566.2212 6390.5495 3231.9568 3504.7792 4648.5519 2664.1341 6682.0849 393773701 pcpe Organic Remediation Herbicides related compound NA Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 13824.6307 3804.2631 4583.758 4583.758 4889.4056 5830.165 2824.0376 4805.2891 6249561 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetivibrio cellulolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio; 12984.1351 347533231 amyA Carbon Cycling Carbon degradation Starch Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 12230.6015 2230.4343 13092597 ppx Phosphorus Polyphosphate degradation NA Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 24229.8313 6264.5741 7273.0777 5148.6052 85837790 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1704851.9218 286138.1255 4822.7217 2177.8855 5088.1273 255930789 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 207238.6154 291816.7767 402233584 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 13144.3303 3906.4757 171681411 pec_Cdeg Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 859777.6763 17465.2678 5984.384 3884.7056 2145.2407 47059462 pmoa Carbon Cycling Methane Methane oxidation uncultured putative methanotroph superkingdom:Bacteria; 12796.5702 4983.9089 160939316 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 27900.675 8678.8126 5094.8539 3307.2413 4864.7275 100775.0859 5442.8488 4292.0152 4455.7915 19689.2847 213338.2634 3782.7567 2778.5303 2974.8184 9828.9819 4686.3356 9193.0064 668467.9444 10047.1584 4931.7111 11994.4806 16453.6939 3106.4932 5558.035 84180621 actin_Stramenopiles Other Phylogenetic NA Lagenidium giganteum superkingdom:Eukaryota;order:Lagenidiales;family:Lagenidiaceae;genus:Lagenidium; 14424.2954 178398.7347 2618.9463 3849.323 61101.4957 2219.3335 5021.2636 8053.8201 3900.5329 3992.1463 2987.1392 126654931 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 13430.7891 4910.2031 8111.3336 4253.0702 2847.5689 2375.5897 336326506 ppx Phosphorus Polyphosphate degradation NA Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 35421.6599 2419.4544 11792.5708 4473.6741 122582.9515 16321.1491 4561.0447 98528.4861 5500.6963 2269.9395 3429.2548 8873.1122 15433.671 5403.5113 6034.0086 5216.6369 116973.1561 3874.8719 3377.9913 4966.6619 226424956 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 18758.2831 40341.5975 7136.45645 6766.6413 5599.4519 6154.4452 3817.0013 8100.3787 5063.59755 107261.30995 7272.8251 7195.11775 7196.9087 7882.1835 6171.7146 10172.08445 5583.51565 5251.5558 9516.63395 8165.072 7159.32985 9754.07965 5255.2967 5747.25295 4833.4654 9507.4846 62468092 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 12074.2914 23279.7324 2864.5481 9387.5617 7430.7219 55552.9979 17721.2643 6661.1546 3468.237 3468.237 8598.0099 10025.6296 7656.7866 8151.9999 3893.2897 2441.1912 3018.0855 5299.5149 4104.5189 17006.293 4246.8029 6426.0957 1645.6885 3565.1273 2862.2982 3461.1256 8144.4898 151588147 dehh109 Organic Remediation Chlorinated solvents NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 15127.3658 3669.7954 2863.1847 24572.2008 4395.3551 93770.4531 6095.9139 4124.6857 2466.2654 2466.2654 3039.5474 12891.6982 4649.0204 4470.7373 6305.7388 4076.6637 2265.8516 6272.8789 2996.4121 11998.1963 3599.2933 6653.9739 3532.6494 3990.822 3413.4029 29882.3663 328490807 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 54989.3904 4365.0656 7055.9897 2594.6982 224027959 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2975049.3977 2186.8178 308751995 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 41927.567 64525.0987 19140.4457 126105513 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 950077.228 196618.4991 367471133 chnb Organic Remediation Other Hydrocarbons NA Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 30037.1358 2583.7582 6308.8563 2521.2002 2521.2002 3174.4198 6000.3584 8078.1635 4368.6977 3425.4017 10030.5949 4314.483 5964.5164 11754.765 3690.9489 270262436 arylest Organic Remediation Aromatics Other aromatics Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 22279.8602 7627.4599 5604.0788 8236.5342 7186.8487 3700.7515 3203.5933 17342.9593 2633.76 57584.7313 4465.5606 4574.9423 23830.1227 16091.361 16091.361 3092.9302 12518.8113 16863.3466 3320.8907 7877.5998 9184.0728 6777.0271 11955.7482 4100.3545 6469.6357 6519.5334 9384.2141 3839.3491 3949.9399 6444.8965 224008106 actin_Stramenopiles Other Phylogenetic NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 11859.8753 4683.68 2398.9179 3700.1257 6023.651 57864209 beta_agarase Carbon Cycling Carbon degradation Agar Microbulbifer thermotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 15102.3995 4730.9973 6554.4639 11481.8824 5512.6113 1942.8772 17730.272 4190.4836 2142.7049 2142.7049 3840.6102 4984.5679 4789.4096 75827268 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae O395 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 412400.0823 3044.8736 242217844 cellobiase Carbon Cycling Carbon degradation Cellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 22345.0965 3914.138 5407.11 295977755 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 61132.6294 15851.0641 29255.5597 27712.6079 9383.9851 10245.2526 21786.6198 5319.7603 5310.8326 107104.2962 88640.1099 37009.8713 6594.2966 16342.7158 16342.7158 7983.9517 45038.0527 7210.5895 7147.2133 6048.8798 2829.4485 5973.7573 18985.3222 29394.7595 32448.765 11727.3188 15614.7258 12314.2499 12981.8851 9385.0283 7709.4238 8796.6689 83853528 sqr Sulfur Sulfide Oxidation NA Oceanicaulis sp. HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 133805.93 4185.7945 182669788 atza Organic Remediation Herbicides related compound NA Clostridium botulinum NCTC 2916 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 20507.2587 217407988 terc Metal Homeostasis Tellurium Detoxification Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 26576.7266 383760988 cellobiase Carbon Cycling Carbon degradation Cellulose Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 45033.6495 5452.4312 32405.8089 6070.3593 5573.8567 2121.9606 1789.74 3594.4304 300532578 amyA Carbon Cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 23609.0609 9981.3105 10745.3739 10280.657 66795.8316 5913.36 6860.0468 6819.0475 7727.8262 4013.2104 5401.444 3226.3136 3426.5149 14818.9296 6710.2063 6030.2091 1939.4583 2790.7009 6314.2589 2417.4966 29650461 nifh Nitrogen Nitrogen fixation NA Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 18660.0052 10059.4367 2749.1859 5328.1933 6870.1979 4156.6976 2247.5295 2247.5295 2984.5461 7438.3898 3506.5074 2903.6538 2722.3592 4929.753 7941.161 5004.9961 2947.5055 3784.2331 144944903 linb Organic Remediation Pesticides related compound NA Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 12129.4932 3792.7634 74187.4459 4288.7445 2835.2471 3061.7927 111021400 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 16538.0209 13394.0642 16256.64245 13890.2754 12723.9052 17455.7509 8169.52285 15197.7403 15109.8355 21674.4109 24284.464 23339.4239 9876.6577 9285.1909 71365.596 123228448 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 11067.9219 4936.7797 4646.9162 285018947 chitinase Carbon Cycling Carbon degradation Chitin Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 274608.3644 88347.391 4852.0643 4408.2759 4811.3952 238022029 ppx Phosphorus Polyphosphate degradation NA Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 31485.3356 257692370 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 11131.9677 3953.4785 89602.3397 3255.8548 8540.1626 18600.6939 2675.4363 4430.2306 89512922 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 14968.2672 155766.9389 2683.2358 9145.4655 3778.0296 3915.005 6517.721 13491.3617 6604.7476 8664.5388 5255.3876 2791.8345 6945.2719 4356.8099 2709.6729 52306394 ppx Phosphorus Polyphosphate degradation NA Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 726464.5581 243878.8858 9998.9286 3446.8557 159903517 PRK Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9211 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 17479.9725 6888.7306 2883.8997 15197814.8837 4819.7689 4444.7624 1924.7939 2655.9581 6552.0455 116747753 badh Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 31155.6668 262454.5024 2137.8525 2137.8525 5157.3189 2324.1162 325208549 norb Nitrogen Denitrification NA Neisseria meningitidis NZ-05/33 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 1677470.3605 28709.5399 3577.9776 3858.5464 8621.7454 54381.7169 6351.7608 6573.2732 2510.5803 14666.3107 5417.247 3893.49 2727.4749 4993.4815 1989.2623 238704389 xyla Carbon Cycling Carbon degradation Hemicellulose Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 10180.3149 126668688 merb Metal Homeostasis Mercury Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4820661.4772 29554.0975 29554.0975 4479.3244 5867.2562 3227.4851 5397.9531 2838.1935 189231560 amyA Carbon Cycling Carbon degradation Starch Streptomyces glaucescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 11444.3317 82703.1963 52654.9166 20175.0874 34747.3334 57592.3493 4098836.4383 100924.0291 139177.9221 35348.5177 57376.5768 392520471 linb Organic Remediation Pesticides related compound NA Rhizobium leguminosarum bv. trifolii WU95 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 25890.4122 194544.9093 34285.5649 83634894 amyA Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 68964.2428 12369.949 2196.8635 2911.5215 4870.1864 3564.6858 4503.5532 3886.5567 3886.5567 7467.5441 8214.3232 5732.5369 6047.6936 7534.7328 5780.8502 10267.5177 9886.7454 5846.6354 3000.2444 5263.9096 2415.4395 5806.7198 269094405 terc Metal Homeostasis Tellurium Detoxification Veillonella parvula DSM 2008 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 12242.2412 10377.9402 3258.5566 4137.0754 330428295 arsc Metal Homeostasis Arsenic Detoxification Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 13802.5753 25578.5706 2292.8028 8363.8216 4081.6504 5900.4216 6528.2001 5343.1057 6948.5099 10417.7759 10417.7759 2892.0667 6145.2387 6914.6723 5597.8255 6157.928 5665.2678 7243.844 8408.3429 5199.3257 7257.3606 1892.3299 6365.2088 18691.059 144790 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium saccharobutylicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 11164.7959 190015940 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus sp. NS1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 19894.4713 12164.0773 8820.1892 2957.7857 4241.2616 3727.6338 30643.6065 57067.2312 5480.6347 4320.7274 2343.177 2343.177 7251.1296 3640.943 8244.0281 28711.0987 9370.3234 6018.7508 3301.7405 8753.3645 50542710 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2288364.7758 38964.4567 3405.7008 5269.5782 63476.6925 5124.7014 3468.4077 3468.4077 24089.8517 79269.2645 7182.5676 4890.4746 3179.5629 12429.4411 17857.8386 14801.3531 9644.305 6143.7063 4415.268 6692.1108 2286.3732 209884324 soxY Sulfur Sulfur Oxidation NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 150143.3736 526479.3517 2537.8318 4930.1881 56651.9585 129295.8807 4563.0101 5899.829 5899.829 2731.7714 5713.9559 5457.915 8160.0954 2374.6222 2282.5358 8502.9701 11330.0707 4960.2097 2089.5367 3401.9222 301058535 nifh Nitrogen Nitrogen fixation NA delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 25354.4978 14624.2936 8696.2442 3726.2228 10056.8549 373485720 thl Organic Remediation Aromatics Aromatic carboxylic acid Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 18059.1458 2152.7008 4838.5419 6857.2852 3827.5794 3585.4692 5358.042 2227.0828 3926.9498 304344049 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 1372713.2125 20926.0934 2878.5437 46111009 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 105808.1307 20723.0141 2284.4153 6102.491 4226.2782 9672.9274 65912.4513 4510.148 4430.7256 4218.828 4218.828 6676.1994 6491.0629 8968.9262 8458.6565 13944.3978 2688.5771 58659.087 6828.0388 10343.6402 11787.8296 1948.3871 5079.1725 5960.9761 222543359 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 12869.6312 17937.5144 2392.0896 3901.9808 3180.7721 3553.6808 3638.4954 9669.7825 5349.9857 17031.0696 6157.4207 5074.4625 7451.83 2834.1671 5850.1339 2540.9386 8410.8728 5545.1537 5751.0218 2274.7065 3886.5244 3587.5125 2753.3672 28905.9038 165932183 Dyp Organic Remediation halogenated compounds NA Marasmius scorodonius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Marasmius; 28194.1439 72521.8842 12476.271 5116.1232 7252.0041 299132720 mer Metal Homeostasis Mercury Detoxification Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 10574.6459 5010.0727 30153.8978 2824.5762 3519.6581 5937.4022 6252.891 5520.0541 38151.3455 84167.9043 6685.6606 10173.5112 4115.8725 4115.8725 3365.6738 8514.7019 5146.7404 8466.2849 4945.2794 7293.9003 3432.5577 8624.378 5610.1161 12136.517 9023.8796 7930.6401 2871.5887 4364.1591 4570.586 7035.4633 300641327 acc_arch Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Acidianus brierleyi superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus; 18341.8558 2247.4302 56967347 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 22456.0707 17589.9148 14503.5718 3847.3043 6356.6305 4077.5637 5871.2631 2483.8424 89811.3913 9072.0052 8604.9794 4238.2168 2728.3964 2728.3964 3112.1998 10157.3448 7318.248 8033.2385 3760.3455 4178.7718 7614.7659 4125.5072 23955.1507 5897.2054 8126.8528 10804.934 4796.9971 5827.6664 4571.1722 6043.058 28975241 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 11379.7609 39819.5127 40483.2762 15342.5914 44111.5873 47263.8705 42927.6906 50348.1364 943132.8104 41566.9303 37366.6461 36178.4566 45790.7563 45790.7563 25522.0497 95824.6306 37649.3185 80406.5499 57565.5125 43161.2494 46380.7269 35536.1153 85879.7492 45371.536 393342.1639 33409.8394 109398.2342 307596106 amyA Carbon Cycling Carbon degradation Starch Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 14461.3834 17232.4596 29077.7847 9712.4434 5696.4399 19944.3131 15728.4359 20268.3426 13140.227 13140.227 41053.5414 23108.0299 13774.2321 292635060 ppk Phosphorus Polyphosphate synthesis NA Bacteroides ovatus SD CMC 3f superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 382652.4857 127763.3764 60476294 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 1250095.1754 321398.9259 4757.8119 8142.9844 20158.0173 59039.9212 8499.8778 8062.737 5536.6988 5536.6988 3246.1811 8736.2643 5804.2472 7440.1696 7384.4552 3820.2671 3276.5489 5852.1091 8983.3825 12110.8124 5111.3936 7236.4071 7917.583 5642.3942 6019.2411 3502.5613 48020.1338 74038414 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11288.8646 218716833 amyA Carbon Cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3446755.1234 4860.7398 19405.3742 11600.4265 122771.0706 25684.045 9082.1427 15575.9354 660800.1048 16465.5614 24212.1396 7590.7515 114737.2383 249425.5225 27994.1958 32001.3052 26771.5127 9192.7487 103635.7789 162134.1091 24281.8611 67621.2945 82843.5754 70536.7797 36162.4273 45096.1824 37423.3184 39271.8469 24516.9071 27316499 ppx Phosphorus Polyphosphate degradation NA Staphylococcus epidermidis ATCC 12228 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 20993.3436 375141068 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 14598.1914 6053.8179 6410.3915 6796.6302 2420.0034 2982.9473 4867.6605 5761.5785 3111.0326 7635.6047 4000.9371 10687.5162 5951.3327 16866.8995 5433.7408 3068.3662 4199.6132 29160311 exoglucanase Carbon Cycling Carbon degradation Cellulose Thielavia australiensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia; 13586.1313 16090.7957 4703.1597 3536.2493 3536.2493 4967.4508 12503.9016 15645.0974 118424388 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24682.9448 8208.8683 3786.9296 2427.5348 3569.5036 63033.8894 8277.3694 4733.199 4291.7125 2793.2011 2793.2011 3124.0751 5935.4855 4114.7902 3098.912 5622.1253 7642.8688 4795.1326 4859.6234 2636.4888 3261.1846 2161.307 239591721 p450aro Organic Remediation Aromatics polycyclic aromatics Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 21081.7467 1910.1331 319413974 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 57895.6411 20924.416 30054.43495 8343.479 100239.08 525286.2625 440681.7103 319405611 ppk Phosphorus Polyphosphate synthesis NA Bartonella sp. AR 15-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 32888.3395 143304 b_lactamase Virulence Antibiotic resistance Degradation Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 38666.7119 383332902 amyA Carbon Cycling Carbon degradation Starch Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 13189.6234 6944.6399 16953.0618 24821.4 3935.6519 3501.5694 107206.2213 5814.0117 10282.6878 5303.4917 5303.4917 4104.843 7475.5555 7646.8713 12086.6623 10639.3559 8772.1043 10427.3877 2345.2022 3460.5842 223558038 ara Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium URE4 superkingdom:Bacteria; 43552.516 49225.9208 19580.7764 27334.7027 2617.1981 3247.372 10341.3172 5329.2144 6160.0768 2634.3695 5651.8305 238755018 arsc Metal Homeostasis Arsenic Detoxification Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 16037.5866 229469472 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 14716.5071 1962.191 78376.8331 3616.0385 3479.2768 6956.8964 26405.1003 2481.3936 6572.1858 10333.231 5207.0908 46308016 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14244.4711 7705.737 3365.8534 6331.4957 347973650 TIM Carbon Cycling Carbon fixation Calvin cycle Taylorella asinigenitalis MCE3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Taylorella;species:Taylorella asinigenitalis; 30002.9362 1437475 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia pickettii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 19970.0073 40563.89415 390455385 amyA Carbon Cycling Carbon degradation Starch Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 21396.4768 9026.651 4649.927 45066.275 448236.4914 5785.1041 69192.2957 296097626 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Arcobacter nitrofigilis DSM 7299 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter nitrofigilis; 28096.1261 239824252 PRI Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 34622.8477 134143109 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 19492.0165 6510.0791 2498.9854 5337.9323 4355.3546 2851.0109 76020.0779 4168.7885 5059.5036 5059.5036 9410.2998 4466.9997 2975.8949 7143.9286 2792.6752 15399.362 5587.4325 3609.848 3005.2506 2898.7405 12911.7218 255715874 pec_Cdeg Carbon Cycling Carbon degradation Pectin Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 948114.2882 179397.1321 2485.8149 3995.9666 230761.8751 9123.4132 9123.4132 12176.4823 10894.4324 8293.548 6780.9903 6550.5213 3473.5782 1785.3302 4222.7477 10289.9191 294101247 amyA Carbon Cycling Carbon degradation Starch Aminobacterium colombiense DSM 12261 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminobacterium;species:Aminobacterium colombiense; 11826.8552 6657.2714 24310.5457 2906.683 2999.7018 219675916 soxY Sulfur Sulfur Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 25979.0114 7967.6143 118504470 ben_bcla virulence NA NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 18538.6175 15314.3366 25762.2781 10508.5431 48611.7083 5142.713 2815.19 2815.19 3601.4917 3938.6614 5063.8454 3273.0451 78093590 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17730.8912 2508.5655 3675.5055 3553.4475 4293.4868 7604.1692 3988.0098 3988.0098 53460.89 4467.6847 13041.3116 3366.0635 6140.5688 5344.1585 11387.9334 10893.3095 3695.2166 8771.5856 2039.503 3177.3713 3956.5263 3809.7481 15911.9186 401249447 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus cereus VD107 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 130088.3321 158334180 amyA Carbon Cycling Carbon degradation Starch Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 33786.325 51179.3375 25080.4811 5800.8829 5598.3862 5923.4409 133737991 tktA Carbon Cycling Carbon fixation Calvin cycle Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 50510.3021 39030.2795 4030.2069 6322.9312 6973.9105 3288.028 2213.2194 3464.6478 379708723 narg Nitrogen Denitrification NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 27280.0758 14629.4155 14408.1653 68904.911 4496.5115 4569.2406 3069.5251 3069.5251 2965.4737 8186.9003 5910.628 6212.9036 4244.398 7736.8707 3659.0297 7260.511 3443.8971 2233.9016 4283.5916 62906758 dsra Sulfur sulfite reduction NA uncultured prokaryote 326484.4187 4606.5391 297171687 phn Organic Remediation Herbicides related compound NA uncultured Rhodospirillales bacterium HF0500_23A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales; 46504.4512 4550.1027 5889.2444 2483.3089 2744.4171 12572.086 9393.6628 5770.8916 5770.8916 5668.5991 27654.1842 14410.7593 6307.8214 3813.0642 24376.1126 19294.1487 2355.7815 4274.4417 4146.366 76803768 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 15452.9198 11693.7835 9547.1689 6276.8019 2383.2746 3775.9988 4738.2223 2098.9196 2098.9196 5376.6383 33986.7555 7338.8811 2327.013 6726.4756 10569.2194 5813.7496 6083.344 2311.174 2695.316 2948.1978 2164.6196 308070617 ppx Phosphorus Polyphosphate degradation NA Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 14422.2606 6428.0885 6284.8592 2714.7664 2714.7664 454423 nifh Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 15494.6017 28900687 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 17571.1439 8697.0013 11899.6429 2097.3987 320451158 SoxC Sulfur Sulfur Oxidation NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 13335.3456 17919.0085 7072.0749 4915.8293 3123.5592 69971.4039 31176.551 6987.5827 3603.5376 3603.5376 7981.0454 3992.5861 7114.6778 7128.6066 72268.8351 46307829 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19657.3689 2819.9121 4487.6647 50998.2743 5133.9231 22199.181 5522.2753 260651540 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 17299.8387 3188.1254 11170.8375 3407.3076 13906.2963 20143.067 1730.4145 3182.8821 116048342 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 513041.6319 130964.8113 81429144 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 17794.3053 66285.1272 6427.899 3508.1698 5504.7533 2428.1028 2501.3154 2333.5899 5212.8021 3227.8634 2132.3691 6467.3535 189210427 cutinase Carbon Cycling Carbon degradation Cutin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 41664.0687 372475504 Sir Sulfur sulfite reduction NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 27175.7509 7284.7733 5099.6154 6189.5693 4129.2294 2959.9385 5848.7942 8720.3267 5586.9834 5695.9799 12080.2573 4342.0329 90441253 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 16835.1786 226943366 cysJ Sulfur Reduction NA Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 160910.4741 3569.778 5030.9319 356753891 pula Carbon Cycling Carbon degradation Starch Streptococcus ictaluri 707-05 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus ictaluri; 1954735.6512 2066.486 259476083 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 2356509.9001 42198.2564 6889.5343 8461.6392 8298.6827 2417.8077 3260.7753 5656.5204 10232.3645 81316.9105 7407.9787 8489.1326 4951.7949 13108.1373 13108.1373 7274.2533 3351.0109 4243.7019 3688.2587 4323.688 87905.9879 3333.2439 9634.8113 9331.2251 6927.6319 4502.2043 7345.0109 12845.7798 2020.8841 221532746 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 2715784.8765 773169.5941 6227.0865 13271.6491 12546.2957 2929.722 3136.1913 73982.8074 350285748 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lenzites gibbosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Lenzites; 10532.3441 6626.908 77967128 xylc Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1105759.6168 308401.2636 4345.9634 6909.0603 3666.1096 8303.0702 7093.8051 6311.6586 2392.7267 2295.6004 478607.4799 260852787 amyA Carbon Cycling Carbon degradation Starch Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 38002.7303 198267558 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 23673.8871 10298.6042 6294.1283 31037.879 4242.1012 2607.7265 88915.7151 6300.4963 6031.336 3908.2228 45955.9612 3772.2578 6185.5276 4200.6828 3148.7792 19192.5132 116743234 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19701.151 5130.3619 2143.6568 8048.8811 3873.7336 3012.1485 3789.9033 5310.4683 141532.7152 5179.0144 3633.784 6854.4735 3187.0237 3187.0237 9137.7077 6014.2584 9086.9906 4089.3345 6448.3881 3663.3042 10963.7981 3548.6828 51769.6322 10079.6485 10745.6311 2845.4483 4086.7283 4222.7117 2153.8879 10920.7538 33864503 nira Nitrogen Assimilatory N reduction NA Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 1742802.7234 595095.2364 3597.0253 3628.4704 6214.2774 5626.2775 3023.7781 13422.6174 83838260 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 14407.916 8105.5882 2667.1008 378580819 tehb Metal Homeostasis Tellurium Detoxification Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 17073.5141 6138.8221 34335348 nahf Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 49433.2601 70617.7129 5850.6568 3475.9913 3475.9913 4807.4663 5556.4284 6477.0008 9974.3932 4900.818 5384.4312 2631.4763 3659.7685 4276.9165 124022517 rubisco Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 12006.6717 261210601 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 140743.57075 11142.96175 2305.7371 5131.13295 70607934 alkk Organic Remediation Others NA Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 21716.8838 120595692 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 1230354.6921 331841.1615 4724.8127 15436.4409 11013.1995 5718.3268 2901.9971 4395.3652 2636.9888 72238.4611 6135.802 4560.6586 5862.6585 6048.6233 6048.6233 3473.5296 9077.6432 7504.3765 5366.136 2560.3126 3832.8013 13026.3785 6480.6793 16728.1183 9051.7999 9860.6392 7375.2066 4903.1674 2334.5048 58774.5059 352962378 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11449.8004 77459190 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 29775.4906 54213.0836 308212857 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 19354.0954 7409.6609 4537.5712 5094.9732 1852.4909 5025.4004 167594281 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 31340.6016 10618.3312 3960.3648 8319.8762 2539.3375 65518.2997 9731.4469 219864111 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1366154.7095 32593.6619 23926.2049 4201.5491 4400.0502 118614.3198 25515.7364 3301.4678 8446.4805 23199.4936 23199.4936 212847.9801 55938.2529 6932.5951 3527.8999 9669.4398 3575.3277 4614.192 6463.1469 6604.2633 22511.5664 7248.3238 8725.0762 7057.0154 4940.887 8711.6123 4025.2729 5198.2087 1389856 nifh Nitrogen Nitrogen fixation NA Clostridium cellobioparum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 17414.0258 49550.3599 3040.3447 13186.0012 5655.9562 7113.6184 7249.4302 2765.368 325860308 nrfa Nitrogen Dissimilatory N reduction NA Prevotella denticola CRIS 18C-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 50804.2373 3867.3894 50982472 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 31224.4911 5283.5985 2651.3696 499714 xylanase Carbon Cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 18053.4899 4432.4223 4074.6735 5261.0856 325547555 tfda Organic Remediation Aromatics Chlorinated aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 18958.2754 3106.1789 3115.7251 2234.5111 209504640 ophc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 568579.2047 143540.1843 6358.375 8719.7711 2610.894 1697.1078 4152.7773 9811.3874 357215800 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 16985.8791 3435.995 10426.4878 2212.4267 302897571 phospholipase_B_fungi virulence degradation NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 1275269.7924 13995.6821 2898.5964 13657.9743 209978146 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Sporothrix schenckii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Sporothrix; 42497.9772 133236.802 64303.0113 32343.0318 40034.1336 48211.2789 258591542 narg Nitrogen Denitrification NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 21435.3264 82560.3602 2071.0565 2071.0565 2594.265 8289.2019 229611205 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14162.9464 83025976 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 12556.2368 16408.8148 7205.8185 14160.1987 53554.2412 4210.394 7464.5056 7857.3801 6291.3197 4977.6305 2846.7324 2891.5854 25627.3487 7632.9571 2481.1113 4230.5525 3391.3173 9906.4754 78102093 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 985901.9737 233604.2776 323533546 terc Metal Homeostasis Tellurium Detoxification Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 13849.4779 2101.1741 3465.8946 110679646 arsc Metal Homeostasis Arsenic Detoxification Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 11127.0591 70124.9707 4267.9 9286.4602 12122.9728 5481.9853 4691.6763 4565.9518 41809.1067 83888.4534 9447.8633 3706.2639 1999.6905 1999.6905 3702.0558 8212.8959 10624.4007 19000.0109 13565.5365 15302.7768 4994.4328 9493.0795 3222.7023 11408.1811 8799.0951 9493.5544 5444.7875 5608.6481 8440.1043 3813.9178 6233.7695 345880863 nosz Nitrogen Denitrification NA Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 10257.712 438275.5423 22255690 nifh Nitrogen Nitrogen fixation NA Bradyrhizobium sp. 70b2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1662946.9213 242784870 cellobiase Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 11999.4526 11174.1905 44947.5919 8464.4065 5340.6115 2501.8053 6689.8352 5369.1331 16300.2638 73713.9098 5222.5293 4537.421 3988.0428 3988.0428 3656.1368 8900.093 6500.4018 9648.6234 9962.0944 2449.6431 12920.0647 5742.1753 7455.0297 3490.0352 3864.4192 3429.7215 5133.8049 296921874 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 11908.5653 83954355 tktA Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 113567.5242 3666.4048 10846.7896 7103.0406 2187.8007 3757.5391 374093782 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 15390.4435 357585503 amyA Carbon Cycling Carbon degradation Starch Streptococcus macacae NCTC 11558 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus macacae; 50295.3904 6744.4479 2732.7184 89051966 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 874177.9108 36162.3054 3738.2337 2520.4543 2520.4543 4444.301 2570.4859 8508.2058 3752.1786 4204381 xylg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A8AN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 413587.2639 129330.2868 16665.661 2222.1273 2721.0876 2192.5744 4800.5172 5202.7324 5560.3672 3789.0997 3019.722 3019.722 8711.7463 9318.9555 6288.8466 2693.0921 8436.604 5639.7755 6524.5255 3701.0711 3525.6813 4451.9852 3586.6074 7077.8099 26278744 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30175.7082 121851.6997 44167.69595 16946.1815 67842.4862 73899.8814 143546.6621 140956.8847 138638.7983 266892.835 407025122 one_ring_12diox Organic Remediation Aromatics Other aromatics Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 23922.7502 88707325 GAPDH_Euglenozoa Other Phylogenetic NA Leptomonas costaricensis superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leptomonas; 40896.9362 22980.4878 13880.4841 4066.6301 7382.2849 158138793 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 18007.1853 4779.9376 3366.6091 297624302 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 140615.5496 22558.6274 9480.5842 3532.5321 6392.1981 3797.1384 9537.1863 23727.8015 12400.8021 343776668 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 203005.1978 126237864 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 12047.1762 9701.3515 8553.2656 4694.6982 8995.2082 10024.8427 4744.9677 11206.3501 11206.3501 56983.6025 5987.3255 6685.8492 13803.9113 4804.6068 4182.0923 383344670 amyA Carbon Cycling Carbon degradation Starch Streptococcus constellatus subsp. constellatus SK53 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus constellatus; 206523.9942 8394.5046 2953.6392 7259.232 3348.0462 3692.6035 116804528 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 189085.8065 8261.6947 6639.5468 5972.686 4589.3458 3886.0711 2153.8963 18749.9234 3394.6589 2591.1859 5965.9127 241895828 ppx Phosphorus Polyphosphate degradation NA Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 13571.6759 260221955 pgk Carbon Cycling Carbon fixation Calvin cycle Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 1256657.4978 18844.0263 10131.5657 5217.9805 23990.5146 5082.6216 2790.2361 2790.2361 10099.671 6248.0676 39692.7857 9761.1631 2793.477 7763.8051 3304.3236 9595.1403 4401.3397 17938.4162 2104.3306 3345.3639 8437.5723 269832620 amyA Carbon Cycling Carbon degradation Starch Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 12181.7129 148550856 dxna Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 40257.6345 26491.40255 12702.70605 10130.7266 14520.5028 16673.60925 18083.13945 21301.5871 333805.1597 20029.1721 16763.46865 28687.91475 10930.09585 34106.54255 27400.79 37779.60995 16383.51805 169600883 protease_serine_fungi Carbon Cycling Carbon degradation protein Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 14774.8655 5502.4791 3882.9089 6276.662 291197186 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 19985.3764 4451.8122 40738891 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 12034.0361 9430.3954 42810.4905 193226.5002 30180742 ppx Phosphorus Polyphosphate degradation NA Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 41168.6989 4645.2784 18739.4697 6109.3653 12051.9263 7985.3489 96469.8352 5079.0038 5257.973 8706.0159 7853.6431 7853.6431 5169.4111 6597.5566 4044.5847 6892.4736 3191.5506 6616.4053 4153.8119 16233.4964 6355.624 2552.2304 32561.4625 2510.7055 5356.9391 24460036 cpne Organic Remediation Other Hydrocarbons NA Comamonas sp. NCIMB 9872 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 68041.4796 24585.23 47279.8579 11797.9085 21414.1652 26751.9103 38161.78035 40934.6477 25828.4984 42139.9506 150397583 urec Nitrogen Ammonification NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 135540.1643 31652.6439 9017.9505 3839.2839 5790.5799 48718.3334 22023074 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 24590.8113 16081.4531 2324.8953 363580763 beta_agarase Carbon Cycling Carbon degradation Agar Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 13860.098 255258526 soxY Sulfur Sulfur Oxidation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 1055853.4942 17099.9215 3378.6235 152008.349 9535.4686 2556.4637 2556.4637 6774.3202 26730.9238 4939.8282 2616.166 25073.7202 2488.6335 9427.2314 6319.0302 3277.1348 5772.7464 5577.6615 4836660 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 15563.9137 4887.5723 2116.2954 2318.1548 4103.3703 5172.6213 4327.1826 3591.189 2026.535 2026.535 3180.5041 3755.8812 3945.3519 2324.3724 7921.3183 3633.9314 6248.6787 2448.2695 7551.2428 3320.8989 6299.7439 324103731 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 35622.7734 111611319 proO Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 14842.2837 10156.0223 46328.4263 4913.4947 14394.2253 14543.0836 3508.8627 2270.1557 2270.1557 2560.1669 15546.4301 45368.7252 22160.1271 84717188 arsc Metal Homeostasis Arsenic Detoxification Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 12382.6349 4753.5338 7797.759 7797.759 10134.9861 6433.0026 7477.6602 4293.1023 3008.1263 16413.7237 5302.9988 302418434 cutinase Carbon Cycling Carbon degradation Cutin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 16960.0811 5382.5243 151302132 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio acrylicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 37705.1312 6006.2693 3776.0267 310943724 mer Metal Homeostasis Mercury Detoxification Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 14758.3159 55978132 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 32487.6349 10087.5291 4052.1868 10586.5585 10269.6983 1737.198 332377350 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 301701.0361 315046686 aln Organic Remediation Others NA Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 17523.1767 53119.9166 390661.0722 188996456 SoxB Sulfur Sulfur Oxidation NA Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 13591.3284 255105446 alkb Organic Remediation Other Hydrocarbons NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 158097.8458 260596438 endochitinase Carbon Cycling Carbon degradation Chitin Cronobacter turicensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 28997.5073 5199.5649 2690.4021 2690.4021 334880540 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 94044.9474 11534.2542 10297.0442 401611.3957 78185927 dsra Sulfur sulfite reduction NA Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 16496.2119 9097.1499 4693.0258 21481.0557 269217209 ppx Phosphorus Polyphosphate degradation NA Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 16294.4366 4279.4768 13192.5784 140116.6277 4525.527 4525.527 24794.2597 5891.5287 73055.0536 3302.4044 422314423 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19145.02 5324.5435 5200.7758 3615.8831 6977.1032 4999.561 4580.1982 4326.3518 4159.6413 1977.4614 3000.6741 2450.0709 216362 urec Nitrogen Ammonification NA Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12268.3072 2258311 mmox Carbon Cycling Methane Methane oxidation Methylocella palustris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella; 32692.5729 12875.0015 85825676 SoxV Sulfur Sulfur Oxidation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11430.0585 5873.7455 2387.6796 90327.0109 5712.4389 7753.9684 5786.2913 7977.5191 9166.8406 2479.6044 2813.9828 5411.968 145961001 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 21013.1049 6747.4213 4132.1233 2724.109 8861.7746 2446.6567 19554204 mer Metal Homeostasis Mercury Detoxification Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 10865.3164 10376.0253 3427.1352 238727430 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 12266.9416 261285915 exochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14143.7123 3332.3933 3097.8493 3482.1524 2270.384 4287.9146 7029.2635 4540.9117 7908.6677 40716.8469 5652.1089 3023.9888 5201.5134 3264.8074 4391.2179 219965637 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 54198.9935 6321.6776 2379.4553 4188.932 357200724 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 12569.9678 6892.8471 2252.0923 6679.7801 5060.5252 3501.4578 66932.0014 8690.122 3618.6808 3618.6808 3522.3758 8251.9883 6657.0998 4380.4177 5029.8769 3199.7148 7769.8208 13005.9647 57735.3808 6306.1054 8255.0308 2022.6463 22452.546 4101.8931 2556.94 6229.8584 315664274 amyA Carbon Cycling Carbon degradation Starch Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 15255.4893 247535121 cysJ Sulfur Reduction NA Aggregatibacter aphrophilus NJ8700 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 472611.2042 146904.9919 302418426 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 23657.5306 6364.2462 9953.4329 13675.513 9330.5238 6831.7129 5952.01025 4496.7548 11432.82655 5208.53435 170160.5809 17681.7224 7171.4301 8308.1711 9781.6674 9781.6674 3921.3229 23205.8854 11329.3868 8374.4913 6093.734 3987.97285 7238.0621 14607.9145 6766.226 6062.41735 14492.9625 8527.369 8815.9939 10643.60365 4925.4933 124257909 tutfdg Organic Remediation Aromatics BTEX and related aromatics Desulfotomaculum sp. Ox39 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 11516.7381 7594.4389 4643.8309 389704225 bphd Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 1035059.5466 14371.8416 6432.5591 30370.7253 10188.5945 7807.9942 1814.3603 302196835 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 13488.7516 18319.8761 28813.6414 7550.7276 39578.3242 174059.7607 4275.0705 7070.3157 3051.7014 9211.3803 386422294 SoxA Sulfur Sulfur Oxidation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 2163490.6942 8340.5198 17474.6726 18863.5953 8125.2316 9461.6283 12560.3356 27194.787 27194.787 15775.6783 5598.5105 13870.8428 30424.1408 3883.6857 5487.2742 7753.1311 4826.5428 136061.3106 10529.3492 10589.0761 3947.1926 7439.5442 6127.4488 3083.0925 5891.3643 392450435 amyA Carbon Cycling Carbon degradation Starch Pelosinus fermentans A11 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 21098.8637 2857.6554 3736.7322 7532.7784 4143.7935 406844.6009 68380.8836 2462.0797 4672.9248 60476304 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 53873.1702 3104.1465 3108.0975 3520.9865 1830.3489 1830.3489 4151.215 6025.7108 2447.8776 8885.3897 1927.8996 2385.6847 354594746 tktA Carbon Cycling Carbon fixation Calvin cycle Commensalibacter intestini A911 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Commensalibacter;species:Commensalibacter intestini; 147506.1715 87301479 aln Organic Remediation Others NA Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 18137.7577 398948919 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 11820.8587 7229.5712 4555.9537 4789.4528 4789.4528 37355.7826 153808550 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 10682.8717 2423.6959 5568.5165 147850383 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 199567.0693 116329.2269 3786.0054 2922.2224 302420813 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 11254.4174 238707083 amyA Carbon Cycling Carbon degradation Starch Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 15570.7608 111073761 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 19488.0444 400191922 atza Organic Remediation Herbicides related compound NA Morganella morganii subsp. morganii KT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 45304.186 9084.942 13556.0326 29989.5413 20428.6787 8819.6595 5294.1784 2805.8607 84796654 one_ring_12diox Organic Remediation Aromatics Other aromatics Arthrobacter sp. 3YC3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 13136.422 8784.7184 5508.5491 10031.0438 3667.6247 5987.4174 8530.22715 5047.4799 117514.06775 46363.2067 5932.814 5718.5981 13313.8872 13313.8872 4500.66015 10562.84875 8680.135 8956.8194 8302.8404 8893.2289 3700.299 3928.34145 10696.1761 7715.2633 26863.5921 5888.894 27641.7403 8964.4274 6025.586 9243.96935 283475012 vana Carbon Cycling Carbon degradation Vanillin/Lignin Xanthomonas albilineans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 52423.0345 10502.8313 8533.634 17494.1701 3972.8097 4331.3644 4331.3644 3566.7667 9760.8037 4392.1129 2123.6587 2907.0416 208401191 rgh Carbon Cycling Carbon degradation Pectin Irpex lacteus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;genus:Irpex; 24917.191 9136.6586 3906.0441 260839294 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10878.9506 357078318 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38376.3473 23303.9233 45385.1787 37786.7102 6662.2698 34993.4365 37758.014 832214.2744 39023.2605 17889.6389 21547.0694 21547.0694 36781.6551 19492.7421 56610.5519 28841.8196 13344.4165 28421.2374 68598.8463 9429.2946 42146.9279 18975.1267 17953.0959 15134.6441 29108.2256 83724317 tfda Organic Remediation Aromatics Chlorinated aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 13202.6174 15477.6062 17702.9597 2232.775 9633.6005 15648.0928 3809.3854 12993.0392 12993.0392 3798.0518 11369.1331 3335.8872 2284.0905 2501.3964 1875.9065 9241.108 256396302 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 500137.4536 110790.6391 7361.9103 2498.2101 4274.1365 3461.036 5191.593 5737.373 7565.1795 3517.1504 2631.085 2838.212 5713.9198 161325506 alkb Organic Remediation Other Hydrocarbons NA Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 1794596.6791 113961.5695 3468.2813 5181.7883 20565.828 88761.5842 4594.4908 2657.6685 26935.8056 19395.8679 6456.6999 4756.7869 3346.5833 8151.2794 302688181 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 32465.4798 11552.7391 7994.0682 3648.9956 7926.0618 14479.4618 241745.4768 5672.25 5038.4346 10290.5654 10290.5654 7581.0841 2674.8722 2847.9379 6343.2496 1883.0196 8379.499 390454736 amyA Carbon Cycling Carbon degradation Starch Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 14865.2723 5194.5719 4087.5654 2463.5697 7052.5303 4078.8781 6357.3423 3361.826 4816.6061 8886.2115 149927704 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 12362.9799 16415148 chitinase Carbon Cycling Carbon degradation Chitin Listeria innocua Clip11262 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 10805.0661 119855819 urec Nitrogen Ammonification NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 14865.3179 4970.3239 11781.5194 9300.9163 4757.2931 5717.9806 2143.3399 3822.9631 3159.7781 66177.8299 4390.4958 7041.0564 7147.6551 4050.2142 4050.2142 4347.9254 16327.2225 3599.8669 4705.3819 3952.826 2734.6476 7441.1573 2855.6946 12819.5515 5763.1004 15936.8187 4489.1195 5345.3212 10741.1213 3440.9172 61401.0927 269986553 mer Metal Homeostasis Mercury Detoxification Candidatus Parvarchaeum acidiphilum ARMAN-4 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Parvarchaeum;species:Candidatus Parvarchaeum acidiphilum; 13107.4564 9368.763 2011.2553 10863109 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus orientis superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 11154.8346 4975.6109 60413.6375 2315.5627 146310965 cellobiase Carbon Cycling Carbon degradation Cellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 22585.4566 6120.5895 149783087 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20763.4089 3964.0609 8286.8297 6030.3543 5475.5427 2432.8999 78420.9594 6538.7336 4703.3255 4405.447 7911.0672 5615.5244 6123.0227 11740.1558 3934.4518 4159.0106 7802.6251 4213.5974 16588.9333 6997.6751 8812.469 3939.3071 4393.9353 4155.9387 5009.9661 9581.0694 115399596 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 62960.4397 11135.4004 8042.8162 336100297 pgk Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 294552.069 7992.6404 3837.0553 5160.7865 8047.1133 5741.9585 4865.7939 103930.6033 11973.0121 6538.3228 6538.3228 7190.1226 4061.881 12207.7458 5764.4924 2526.3012 6273.654 2844.2648 9325.1812 7331.8397 4060.9317 3475.35 3517.2856 4516.2304 254502915 B_lactamase_A Virulence Antibiotic resistance Degradation Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 20116.6955 8755.6242 2772.877 3790.7404 3111.7611 6856.7895 11209.6514 12607.4226 12607.4226 5720.1937 5883.0635 64330.6213 7768.3584 4149.071 12652.6312 5270.9374 4068.3709 167594233 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 879405.0754 193696.0522 18061.0488 212538609 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 43022.6208 6150.5697 4629.98105 5072.3133 3331.7507 6775.4006 12040.4492 96319.16075 8685.24395 6767.68575 3479.3303 3479.3303 4083.37835 9462.3496 7050.4239 6006.43645 8341.15975 6852.00915 3596.6645 4688.1714 16134.16535 13251.5349 9182.0766 3610.9587 7716.05705 9387.6049 9450.8968 116625954 exaa(moxf) Organic Remediation Chlorinated solvents NA Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 51072.1159 10573.7537 5349.508 3356.2037 117984637 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 209478.3341 90997.9897 295439138 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 12193.925 3010.0636 5060.7471 6473.9014 7937.0686 33262.2287 10649.6966 2369.3116 2581.7841 6293.8741 2242.4295 6229.856 126625792 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacteria bacterium BAL38 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales; 179724.3671 3777.8131 2482.8242 2310.2806 2819.4565 49866.6372 151302277 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobacterium catecholicum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae; 13771.5702 3074.1735 4412.3212 64332.8567 8304.7086 4421.531 5812.1597 6195.5369 6012.4004 2639.8223 3366.9011 11665.1626 49751.7809 2781.541 4398.6028 179648.5304 3980.9367 6264.5784 392291253 B_lactamase_A Virulence Antibiotic resistance Degradation Thermoanaerobacter siderophilus SR4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter siderophilus; 13275.3127 291522430 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Coprococcus catus GD/7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus catus; 12947.7015 109452435 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 53263.8145 4782.8866 33669.7396 3017.1542 7589.0184 5031.5193 5174.2765 10962.805 7144.6538 4139.9476 50309205 cellobiase Carbon Cycling Carbon degradation Cellulose Kluyveromyces lactis NRRL Y-1140 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;species:Kluyveromyces lactis; 11250.6855 3126.5897 4811.7042 3901.6992 8313.7811 6436.4682 3670.7057 5138.878 2515.4633 383824679 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 17599.8011 21590.8223 20299.5987 2054.4724 2054.4724 6052.4964 2226.6797 38427052 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16379.1809 8915.4662 3574.8727 331695171 merb Metal Homeostasis Mercury Detoxification Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 21549.9265 29613.832 8999.3736 3859.3934 5408.0183 3941.8656 5350.5526 5350.5526 5937.6503 7162.9172 3241.3326 8335.6645 2604.1715 14161.6517 7642.6483 7142.8383 2416.4632 3329.312 5477.124 2796.2096 4934.3446 319407743 tktA Carbon Cycling Carbon fixation Calvin cycle Bartonella sp. 1-1C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 17483.8188 302038753 amyA Carbon Cycling Carbon degradation Starch Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 29819.9422 12097.9211 11433.0288 5444.4232 9466.8872 161387253 mer Metal Homeostasis Mercury Detoxification Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 17504.4451 9677.17975 92835.97445 62270.702 257805145 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 13804.6334 225791550 gdh Nitrogen Ammonification NA Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 19742.1695 3952.5232 2021.1253 2021.1253 2875.4053 6500.9533 7372.8838 2648.6814 3060.5936 71908747 SoxC Sulfur Sulfur Oxidation NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 20342.0854 40664.2815 10285.5061 48467.1107 6515.885 5493.3194 9065.3808 11147.61115 14556.30705 16934.90325 27466.3535 35731.786 24297.35205 9924.1842 62776.3829 13819.43395 48798.70825 20285.4617 32680.1308 357053200 tehb Metal Homeostasis Tellurium Detoxification Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 21846.3621 269965180 chitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 12447.7857 118473639 linb Organic Remediation Pesticides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 13781.0084 5646.5186 3135.4169 3135.4169 21309.3901 5971.7861 4143.6577 2072.187 7002.8134 2752.7607 13230.3182 8533.8041 2939.5296 311087828 cysI Sulfur Other NA Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 27807.3726 3734.678 3342.1497 4397.0053 91777436 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 1171216.8103 11039.1096 5080.6151 2852.1498 2698.3016 7010.3993 2497.7476 58249.9357 3638.6266 4159.6897 2229.8225 2229.8225 3540.394 24707.6348 6014.8801 2277.6522 3297.6848 8073.8629 4419.0396 10685.9103 4733.4293 5342.6719 5220.8544 2609.9221 5949.502 5990.5328 255327548 terc Metal Homeostasis Tellurium Detoxification Rothia mucilaginosa ATCC 25296 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 19749.7128 7980.6706 44374.4606 4275.7445 4421.3388 246280.2941 9784.2887 221218449 urec Nitrogen Ammonification NA Staphylococcus sp. T-02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 19612.9783 237809098 cysJ Sulfur Reduction NA Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 15867.8821 8764.4892 5862.7023 355623476 chitinase Carbon Cycling Carbon degradation Chitin Clostridium sp. 7_3_54FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 330130.4299 79968.1649 158450454 endoglucanase Carbon Cycling Carbon degradation Cellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 42116.1794 28253.4014 4993.9703 4993.9703 187977648 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 31663.4956 297554332 linb Organic Remediation Pesticides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 443509.7151 53892.0119 163855695 xylc Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 36804.8554 51858.89965 60377.7794 118584.563 19663.8327 11698.4613 44407.37675 11081.3327 25508.3408 54580.4721 145238728 pcpe Organic Remediation Herbicides related compound NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 11945.5318 4433.277 5086.4384 3188.1386 7126.5074 3659.9369 7770.3055 4212.6438 5818.1344 12743879 endoglucanase Carbon Cycling Carbon degradation Cellulose Caldicellulosiruptor sp. Tok7B.1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 18342.0036 397322865 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 774858.6272 98645.2699 2461.7589 2201.4501 3609.1046 3585.9635 2755.664 6125.3649 4608.3565 4544.2496 13560.0112 2663.8797 6241.2843 8849.591 6267.5692 2570.5663 2721.0408 6781.9013 330830351 mer Metal Homeostasis Mercury Detoxification Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 11467.7979 77448.2706 7982.0987 11505.4615 9961.8094 9961.8094 8120.5011 1402841 mnp Carbon Cycling Carbon degradation Lignin Ceriporiopsis subvermispora superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 12527.8363 2776.0832 260433860 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 33544.4623 6876.9908 3187.7221 12332.1918 72578.1242 4506.1132 2550.1584 2550.1584 2793.2822 4723.6726 2499.0392 2738.51 7100.7989 2650.3725 8799.1253 5000.3861 5215.9017 2364.903 4862.9373 3267.3903 3186.6314 6544.2563 301108055 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 13014.9058 8515.0017 2756.982 312218535 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 39424.5896 2491.2622 8593.8503 16885.1166 12701.1621 9532.5684 2742.9984 2742.9984 2973.509 22795.0382 16680.5455 8020.3947 6216.3284 4539.1532 18089.8007 5145.4614 12649.9186 3909.7038 8744.0383 4206.0896 11926.4652 2196.9222 2635.4853 5607.9622 14276799 dsra Sulfur sulfite reduction NA Desulfotomaculum geothermicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 382933.1635 9674.7986 4476.2725 3806.636 2361.3534 73065.5466 8216.9091 10398.1107 23403.7382 5351.9832 4950.7399 6603.5062 9310.7742 2986.967 4664.0723 7208.3495 5670.0532 11684.8611 7505.2125 18298.5061 3039.2402 5131.6932 421355.3603 3281.8966 28088.6572 365139113 pme Carbon Cycling Carbon degradation Pectin Klebsiella sp. 4_1_44FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 9745.457 2441.1518 111017352 nira Nitrogen Assimilatory N reduction NA Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 15197.1738 12813.3983 10045.8254 3262.3219 6282.4937 4172.4203 69130.9003 20900.0329 3706.8906 3706.8906 2998.6057 5453.7166 3220.2173 3053.1721 5209.7581 8654.9044 8286.215 3894.5791 5275.1648 1562.7678 2909.0474 3956.6555 2823.9374 376384478 cmci Organic Remediation Aromatics Other aromatics Klebsiella oxytoca 10-5245 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 12194.0288 2904.422 3474.0605 3474.0605 358234424 pcag Organic Remediation Aromatics Other aromatics Acinetobacter sp. NBRC 100985 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 12041.451 392409040 nosz Nitrogen Denitrification NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 12057.2553 33800.07 3576.1052 4090.6993 6601.2098 4118.1882 2997.3168 84780235 ppx Phosphorus Polyphosphate degradation NA Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 42732.3871 5009.3237 4426.298 49687.5521 2859.2541 4991.4066 5731.5199 23260.1104 2884.3354 2864.257 332377228 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 15011.9628 255531507 xyla Carbon Cycling Carbon degradation Hemicellulose Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 3293070.6749 3363.126 11088.446 2346.561 9025.8315 3192.9692 86778.3032 6751.2303 21830.6857 5739.534 36707.5354 36707.5354 5666.6698 9090.8692 5333.9567 7365.7028 7693.3169 5326.6371 3073.3986 4444.0246 5971.9211 4898.4193 12252.1647 15428.1097 8534.0747 6929.2074 5129.2792 6574.8626 3423.784 10026.5596 388530833 tfda Organic Remediation Aromatics Chlorinated aromatics Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 10552.0793 8434.993 7074.8416 16486.3193 2830.1207 63551.0304 3212.9925 3212.9925 3925.7528 3756.357 7651.4777 7855.84 7259.1694 7183.5916 3159.3032 2904.8657 3369.6679 109452467 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19151.5743 14990.8133 14990.8133 262375069 bphF1 Organic Remediation Aromatics Polycyclic aromatics Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 141636.5545 9751.9243 6131.1924 2314.7088 5531.6317 3444.5856 240279287 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 210974.2315 127165.3846 241270.2039 104426.5185 165047.0259 502894.2623 500166.0612 300985.3877 138506.4928 124530.1031 222995.7472 318834.8254 227515082 badh Organic Remediation Aromatics Other aromatics Lactobacillus fermentum ATCC 14931 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 13736.5463 110280197 endoglucanase Carbon Cycling Carbon degradation Cellulose Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 1961163.6553 491324.3163 60427.3766 32578.6506 229086560 ppk Phosphorus Polyphosphate synthesis NA Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 17148.9516 4892.8903 56678511 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 15513.1596 5222.1755 2275.9453 542963.4677 4544.3749 2844.8865 4556.5387 6300.9524 2731.6723 2731.6723 6941.2142 2333.6906 7384.7855 1972.5011 8989.494 4209.9237 8726.9596 2756.2954 3605.3406 5518.9157 7373.1236 189198075 amyA Carbon Cycling Carbon degradation Starch Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 21297.3222 343097174 B_lactamase_A Virulence Antibiotic resistance Degradation Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 14790.9246 3857.0466 4290.6537 6261.4359 2383.0116 8507.6666 1857.2649 4287.7186 136323.2067 116508763 mannanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 56071.689 2964.6811 375078842 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 128265.6775 21388.3875 4718.8474 149174169 nitro Organic Remediation Others NA Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 15394.3089 2991.6718 5524.7753 221420.0669 3613.8439 2275.0952 67264.7529 9872.7374 4674.532 4058.379 5886.7822 5109.7429 2763.3785 3099.2477 3161.9276 6807.3135 164688417 chitinase Carbon Cycling Carbon degradation Chitin Clostridium bartlettii DSM 16795 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Clostridium] bartlettii; 15554.0019 5871.3634 85666981 pula Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 15730.2821 11107.663 403650.9526 1255468 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 14685.619 7094.7353 6382.5224 3037.7288 3024.0927 4931.3733 3810.7971 6839.0287 5360.0847 7538.2991 8777.9252 3067.5464 4009.0703 9407.1749 4647.833 5587.2798 3667.048 5339.843 3766.586 451910.2056 90420452 poba Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 20045.5802 15738.2768 8140.6244 11916.87715 27383.5515 217687.44965 22622.926 7788.06965 30494.1436 255071105 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 109235.062 12902.3458 3347.3831 118424527 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24099.0968 93666.891 5122.1614 28400.2102 11760.2762 3463.2969 109552.3788 7339.0195 18824.7638 7984.047 7984.047 4841.5197 6295.881 2758.6775 8803.6922 6371.0627 6950.8708 1961.7213 212535192 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10843.6913 20218.9359 119184603 nagg Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 23678.0398 5119.9392 4448.1955 260615031 chitinase Carbon Cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 18424.1272 170707.4351 53356.3906 421988.7164 53465.1778 103348.2786 26906.1332 72945.1255 171168.9354 153358.2811 138831.4564 138831.4564 68473.2803 220149.9835 87652.4475 89138.3238 199108.30105 328012.9164 108544.3287 84770.0891 166075.027 249185.4362 151275.0712 71540.3132 366240.4432 311312570 chnb Organic Remediation Other Hydrocarbons NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 11428.5227 3858.6139 6779.0788 22599.6169 3052.8953 3478.2779 3932.4456 3919.4891 2065.431 2065.431 2600.3671 6494.3192 5228.0244 3509.2775 16056.4556 2215.0741 7343.186 5640.6054 3343.6658 3384.718 2253.0453 148835866 arsc Metal Homeostasis Arsenic Detoxification Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 17193.0297 21648314 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 165926.4242 65631.7732 110683.8492 46580.0894 45562.76515 318149.1469 115153.7661 260769120 chitinase Carbon Cycling Carbon degradation Chitin Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 2631674.5941 193477.6474 117991.2217 319943662 mer Metal Homeostasis Mercury Detoxification Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 56240.3609 10687.1827 11289.6526 2391.7698 2391.7698 6222.0437 4214.8124 3437.1778 4757.4282 5381.722 2038.5526 13511.0868 4079.571 10242.3401 6770.5172 2798.0376 3836.7248 2183.0327 165880045 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 11325.383 347712.1955 295108320 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum A2-162 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 2519013.936 657489.2675 2843.4026 2956.225 5387.9843 3730.6142 3924.5329 4996.6127 4216.233 6692.6279 7111.1459 3999.1899 5990.7061 2041.7051 3211.7884 3805.1481 2257.4212 56086.1806 291351519 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 17856.8554 20269.3021 39280.9314 13501.65225 49591.5893 219847229 ppx Phosphorus Polyphosphate degradation NA Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 15776.3679 174524.4195 6416.9029 392457.4868 2959.3523 3608.4667 4688.0206 16301.6345 4576.7164 11947.7204 202010.5338 18557.2469 13913.9082 17436.3228 13469.9265 13469.9265 2816.3673 8128.7338 3849.2372 2201.2261 7609.5967 2629.0633 4806.0716 6651.3106 3870.8406 3127.4684 4625.4237 254482500 napa Nitrogen Dissimilatory N reduction NA marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1511339.2512 101421.5523 5770.5016 1950.4543 1950.4543 24301.7769 75668.3638 5319.6463 4935.3741 25894.1159 11256.7406 8006.3628 7385.0032 4899.961 8141.0359 1848.9004 406937012 linb Organic Remediation Pesticides related compound NA uncultured bacterium superkingdom:Bacteria; 33240.2543 358753230 RgaE Carbon Cycling Carbon degradation Pectin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 55494.6068 43487.5972 59552.2696 82760.1021 34272.5768 338462.1348 36849.8083 48445.4435 74531.5545 37207.0532 1252420.224 77936.3181 41852.0589 41852.0589 43013.5919 70427.8964 54765.7716 107271.2345 72703.7884 89899.7183 29012.4054 35012.5271 66832.0279 30232.4621 114099.8902 36519.2844 44073.4394 78058.3734 121704551 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 11865.1435 3157.9828 86220.213 3379.1543 42329.0507 42329.0507 7414.9233 4320.5401 2980.0229 3476.1304 8650.3623 319650028 cda Carbon Cycling Carbon degradation Starch Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 15750.98795 3919.8256 82791419 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 173896.9585 55798.2522 2479.1139 2186.2127 34104794 glucoamylase Carbon Cycling Carbon degradation Starch Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 570685.1858 157722.754 88866357 dsra Sulfur sulfite reduction NA bacterium LS2003 superkingdom:Bacteria; 11821.6582 7193.1811 4414.4823 7072.2109 3806.4525 4107.3966 2778.2038 1996.5838 163802485 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 44308.491 16803.3785 10264.339 12667676 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr624-16 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 16803.2537 7974.0874 5220.3547 27422.657 357937696 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11056.219 153488.7058 8734.0701 11649.4627 5611.3313 4031.711 4569.635 3861.0777 4127.9353 6196.5845 3033.8795 115084.7066 7986.6139 6167.6101 6242.1623 4013.7171 4013.7171 3508.683 52912.0708 11519.4565 6112.2772 9590.2855 3039.4573 4323.9625 12460.9928 13086.7191 17644.5599 10787.0488 18051.1601 4437.0714 5620.7454 4469.5789 4017.5144 7995.5265 150972 bphF1 Organic Remediation Aromatics Polycyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 19534.8916 7285.0158 5904.7423 150423033 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae AM-19226 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 441729.6895 24132.83695 3062.3416 2554.4955 2800.1047 3044.0431 83340.3697 3144.7918 1798.1645 1798.1645 2761.9603 6982.83155 4172.0338 5037.29355 2365.33215 2783.585 6136.5498 2650.9317 8043.1991 4049.43245 6297.34915 2604.7361 4468.9324 4074.09875 3950.5975 7920.6171 118073646 oxdb Organic Remediation Aromatics Nitoaromatics Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 15269.2745 12263.5821 332715725 alginase Carbon Cycling Carbon degradation Alginate Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 14452.9617 3081.346 2079.762 44652.8781 35246.7196 281405687 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 25641.3363 50090.2014 4487.2492 13447.2241 2614.4707 2614.4707 5177.2008 2999.7766 6619.4906 3438.4657 45386151 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 15929.965 10695.0389 2672.3935 3813.0317 2144.2705 2144.2705 2787.7384 4319.597 4905.4386 2112.0336 34017096 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20016.7761 340003222 ara Carbon Cycling Carbon degradation Hemicellulose Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 11078.964 91223107 pula Carbon Cycling Carbon degradation Starch Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 37653.7918 57859.02 2234.2349 2234.2349 10534.9323 4536.4354 3687.5426 2176.7377 2453.5915 5907.2041 4894.362 2961.5962 254403135 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 20923.1013 96105.8929 29442.3534 39125.2891 12511.3244 3363.7017 5499.4341 4244.8399 3650.0667 148620.5816 7004.0375 8443.9747 25645.4815 11022.7765 11022.7765 3239.0644 14435.1658 12462.2699 6643.8546 8158.7705 21045.989 3121.4569 12241.9432 10603.3084 11676.7901 5335.6746 4617.3634 8146.7088 386403611 hao Nitrogen Nitrification NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 23305.6338 76388.1447 7123.6488 2239.68 2239.68 6356.652 10863.6248 2700.2347 2603.4234 383702306 arylest Organic Remediation Aromatics Other aromatics Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 19859.3766 357939290 mer Metal Homeostasis Mercury Detoxification Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 50792.437 28642.1622 2902.7033 3167.9137 4198.7287 16419.7748 3586.9643 82712.5519 5117.408 2961.1204 2961.1204 14291.2663 4097.7954 4851.3253 4371.4605 9560.1504 102964.9809 10641.2739 21800.6173 14969.3631 63508.7837 3238.3483 6031.6909 4792.3829 390436962 arsc Metal Homeostasis Arsenic Detoxification Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 63160.6901 15282.2702 82767.6342 33729.1691 6552.6256 6134.3103 2543.3918 9451.0463 2059.7855 3005.8109 4070.7324 5606.9431 407362149 catechol Organic Remediation Aromatics Other aromatics Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 197385.8358 45621.2408 4654.2293 3817.9199 4539.1577 6732.7457 6711.2687 7128.1511 8058.6241 42603.6849 2334.2009 2849.7244 10845.2715 6381.702 2210.5873 4809.3682 6972.2668 258577217 nitrate_reductase Nitrogen N Assimilation NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 23606.7217 18077.43 114800416 mer Metal Homeostasis Mercury Detoxification Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 11579.7532 26209.5538 5685.3211 12508.9532 4898.6157 5639.16945 4973.50865 14459.6539 34814.0363 8370.7175 5495.7774 5495.7774 6885.3001 6360.4659 12491.2551 12525.5677 9595.8266 6849.4599 7820.9827 8448.5088 7443.19265 19347.44275 12012.27705 2911.67045 5694.30605 8029.49635 6525.2203 14044.8324 328886780 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces venezuelae ATCC 10712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces venezuelae; 34037.5079 191054.8766 11983.5852 3650.1693 2757.6157 5522.4043 4859.0404 5349.111 266428.6008 3932.8679 3876.4566 2518.0541 2518.0541 4105.4951 6597.7981 3961.4992 4984.3655 2821.9845 6272.4563 3050.3692 8836.4567 4282.7342 4509.2408 3085.2466 5447.6698 169607279 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 57217.718 12730.4971 5150.5841 8951.3001 2433.9497 4838.987 5303.2537 3911.2788 90311.4424 3945.294 9691.4923 6484.6911 2945.2132 2945.2132 9242.7336 13031.1103 6379.7673 7919.4929 3616.6955 7468.7824 5333.0319 12357.7574 9496.2095 41392.6601 5634.4622 8921.5782 6123.2166 6080.436 12487.5812 5399.6713 9384.7177 56809465 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13363.4516 11009.1634 7183.1859 27123.6061 12575.9358 3610.24 7762.9953 1743.245 4150.8934 53578.6222 327542140 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 291793.1241 6453.1354 116219.5818 7582.7592 3639.541 253995390 terc Metal Homeostasis Tellurium Detoxification Methylotenera mobilis JLW8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 59518.9754 169777.5518 14163.3673 4909.0436 2879.7178 5603.4273 196113732 ppx Phosphorus Polyphosphate degradation NA Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 15130.8029 224522151 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 253585.7357 84413.5404 7222.8705 2930.1235 84639.9078 11007.1272 23378.5846 5541.7122 5541.7122 7668.4963 4229.579 9885.2748 5396.6838 2786.8051 2507.7721 13093.1018 4586.8876 3737.9543 58730.9368 169794369 nitro Organic Remediation Others NA Acinetobacter baumannii AYE superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 1594249.9771 55833.3578 209486840 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 159192.7659 12851.1737 3802.4414 3332.6626 5394.6961 4290.5759 154863.0885 5053.6143 15785.0766 6325.5175 4462.3414 4462.3414 6280.3688 10102.9197 6632.5152 5643.8841 8502.1691 4874.1055 5140.3895 4953.8836 7391.1808 5468.3411 43069.516 6074.9172 23821.9064 3139.9658 8413.1996 5567.5053 21444.486 7480.4945 309251202 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium bifidum S17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 11469.1373 4422.7783 4377.6933 1970.4491 3598.4678 154687006 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 18379.9034 335424218 chnb Organic Remediation Other Hydrocarbons NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 30295.1005 14679.2083 5597.3018 3444.0365 119005.3853 13900.4086 4277.1937 3507.527 12206.4316 12206.4316 2743.825 18344.4041 3320.5221 7516.0834 5994.4881 3051.0749 97937.6477 9719.6655 7744.9829 5350.9597 4708.0145 4711.6323 2819.5874 4112.1058 1965.7298 325964873 rgl Carbon Cycling Carbon degradation Pectin Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 41919.3151 3463.5479 3577.0599 35199.9887 7402.3941 62273.0794 4665.9334 17851.5088 6839.8602 25760.2105 25760.2105 36366.8064 7610.9203 4879.7478 3756.1259 2881.5467 3955.6891 9970.2087 22924.4987 38731.4977 8378.3672 97814.7844 3881.2777 3683.4768 5442.8271 2322.4636 4483.4571 392402372 arsc Metal Homeostasis Arsenic Detoxification Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 13559.9524 8170.9525 2810.6088 4627.2515 8051.2769 133119.7809 6613.6734 8245.1411 17759.7845 4747.6271 4747.6271 2503.9953 11648.0178 4174.6745 5436.7968 2136.6723 7413.9982 7060.4267 11564.3512 11298.8926 7356.3686 6333.0622 5647.2149 7170.3985 14102.4289 27475.8766 218132516 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacteroides] pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:[Bacteroides] pectinophilus; 10255.2488 11412.8224 110635943 tktA Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 188588.5514 7549.6752 5870.4076 25658.1293 10229.9629 10334.9187 11140.4205 3763.1171 1774.319 3717.6651 295689407 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 329799.1973 6562.3776 66149.1646 13134.7561 6248.7513 29652604 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27187.9839 2589.7834 12640.8439 13549.7831 3893.8753 3982.3488 6991.0326 3453.8291 5365.2794 1960.4043 24421489 nirs Nitrogen Denitrification NA uncultured organism 21996.8788 4917.3144 209897567 dmsa Organic Remediation Others NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 19930.7011 6781.1112 75240.4142 3799.2237 8497.5591 10628.99 10628.99 13836.796 3441.9285 6930.6738 2497.6543 2623.5994 25747.121 119871688 dsra Sulfur sulfite reduction NA Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 25013.7315 30026304 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 13740.4917 9358.4369 4825.9548 5298.1216 2401.3022 2401.3022 6012.4836 4586.3147 4470.89 7056.2696 4283.6559 6020.0997 301114139 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 12352.2586 4671.572 3597.6287 91225408 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 16166.4603 34369.2205 2050.0436 341926020 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 15568.373 18472.3757 4781.2733 4592.4121 106110.3136 3619.1514 5129.6846 7065.514 2937.4804 2937.4804 6861.4424 5089.038 3642.9413 3097.092 6363.6552 1921.333 4937.0793 8020.1841 3617.9162 3845.2297 5579.5377 400204519 badi Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens WC-A-157 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 90923.3854 5022.8922 254470538 chitinase Carbon Cycling Carbon degradation Chitin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 106622.4904 292818742 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 11307.0849 2477.2934 2477.2934 5687.1344 1639.0895 379990815 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 24194.5204 7131.5365 7131.5365 372270087 xyll Organic Remediation Aromatics Aromatic carboxylic acid Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 11829.7554 68039.7295 276441.7745 60215.377 9457.0548 47337.3129 60552.8708 77567.4165 46069.9408 132096.70495 102683.2323 296810640 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 11018.2302 557379.0179 158423435 FBPase Carbon Cycling Carbon fixation Calvin cycle Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 163262.1188 49210.9786 21508.2581 347532831 amyA Carbon Cycling Carbon degradation Starch Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 24888.8436 9003.667 48631.0852 5947.8939 6719.2292 5075.7318 17817.2916 120746.3326 14239.0566 15733.0935 11029.5237 7190.4304 7190.4304 3105.7067 29921.583 6037.3018 5318.622 6574.6925 6309.7494 4654.141 5227.0318 17867.5236 17334.8989 33036.0379 9334.5541 13413.1607 5242.6589 7278.1668 5356.9324 14682.5371 5011.7103 229740103 mannanase Carbon Cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 336956.144 47410.0778 56809419 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 19862.9322 46138993 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 185770.3407 16147.8943 5735.2558 440662.417 13405.8957 45858.8866 13035.9197 3695.1194 149817772 vana Carbon Cycling Carbon degradation Vanillin/Lignin Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 55742.9994 7707.1154 4373.5177 3100.5521 2323.0622 2323.0622 4450.1873 6534.6218 5833.8869 4986.1227 3430.1393 267984376 mer Metal Homeostasis Mercury Detoxification Edwardsiella tarda EIB202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 23430.7589 14214.8602 9489.0116 2749.7107 2504.191 2504.191 2245.2751 5362.3168 2633.9522 257464841 nrfa Nitrogen Dissimilatory N reduction NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 605538.4542 167654.9486 3140.7161 7959.6573 3839.1743 6902.7023 4100.1959 5442.1259 7762.9559 3579.2875 2570.1399 4496.1509 2681.6212 4576.2735 300865153 tktA Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 26460.9995 10792.2899 14238.5494 1905.7891 1905.7891 2685.1069 2126.478 5063.1612 89241970 rubisco Carbon Cycling Carbon fixation Calvin cycle Chlorogloeopsis fritschii PCC 6912 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Chlorogloeopsis;species:Chlorogloeopsis fritschii; 15467.6531 3943.0786 164455252 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 15555.3171 5315.3427 2888.8486 2532.6084 3643.4557 20249.6162 74492.3038 3859.1763 3324.4305 8569.2358 4496.8955 4473.3149 4939.0865 5918.1081 2583.3641 2598.1281 3063.2408 9645.1997 4235.379 5929.8303 3808.987 5184.9173 4095.5767 2970.4485 357200034 amyA Carbon Cycling Carbon degradation Starch Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 16219.3784 1872.34 1872.34 177456.1045 296184768 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 11988.7183 99083219 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 15555.987 126628289 arylest Organic Remediation Aromatics Other aromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 15744.2978 3383.3215 3383.3215 3325.227 3471.4452 251845633 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 30899.019 37481.1266 51793.3883 157165732 napa Nitrogen Dissimilatory N reduction NA Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 10805.734 3845.5781 4103.3015 70370.2822 3516.8115 3383.8012 90925.7122 6988.3823 4939.0592 3850.648 21882.264 2996.5808 4844.0258 17257.625 3081.3301 3470.0054 2766.1361 302199810 arsm Metal Homeostasis Arsenic Detoxification Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 15983.3697 5159.9152 21700.278 15085.8113 296426589 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 220561.862 2789.7388 11235.6796 4171.6603 10524.7178 3889.6466 5462.6492 3054.1462 2834.2456 20464.5194 9099.9246 4897.2443 2886.9378 3585.7663 3443.7457 4436.6944 46859.9775 164455870 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 12245.1787 16478.4166 6865.1852 3178.0143 2748.2587 5727.5236 4950.6344 11133.0454 67856.9144 7654.1877 5037.9186 19119.9054 6884.645 6884.645 4284.0964 9248.4628 5126.0982 19453.3917 7145.0187 3312.2052 9348.9007 9796.0761 3781.928 11078.2969 11890.2213 6269.3492 3439.4195 4812.0691 344221953 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11317.6126 4102.686 10616.063 4686.8139 2259.3522 2259.3522 12092.1261 2078.2418 4386.5293 5969.1538 3417.8027 13898429 dsra Sulfur sulfite reduction NA uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 890177.8082 9445.7838 2434.5911 2358.94 77611.5293 6318.5384 5046.6577 5761.4512 6304.2206 8696.0973 4306.7751 6815.1545 3796.225 4691.4576 7601.1798 4116.4642 9314.2459 7449.296 6686.5807 4223.0551 4481.2437 7816.5264 52631738 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 494228.2984 20058.6678 4746.8622 145304531 bphc Organic Remediation Aromatics Polycyclic aromatics Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 25851.9537 6899.5947 12053.4902 3755.1836 1039725.4313 4549.8547 19135.0032 24193.7976 11709.2231 4564.8221 6182.1223 3704.1391 7603.3645 3940.6369 6237.8265 3445480 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 51012.4441 40163.5432 88861520 tehb Metal Homeostasis Tellurium Detoxification Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 5154.5982 8063.0825 3341.4939 6579.9509 2186.5185 3654.2052 387590164 amyA Carbon Cycling Carbon degradation Starch Bacillus methanolicus MGA3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 9995.1934 4127.7212 134034460 mer Metal Homeostasis Mercury Detoxification Streptomyces sp. Is-BDOE1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 11473.9519 2764.1756 9660.3604 3951.5723 7593.0114 725714.8238 113805.4168 45973.3933 4846.3278 5232.757 43022.681 10545.6134 406718157 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9912.9628 2323.6436 2511.2852 109452446 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5381.6394 3713.9069 365329556 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6212.5941 9977.1259 2874.989 4803.8879 3735.0732 84053.9806 88896.0302 5849.1256 6393.8575 20492.9484 4157.8268 4157.8268 9079.3136 4083.4239 5270.9233 6157.0194 2538.5122 5198.6214 380693472 amyA Carbon Cycling Carbon degradation Starch Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 17704.5357 4855.9845 374372879 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 5759.0964 3343.919 3345.5578 4248.1094 11299.7539 2695.0469 2695.0469 6523.6007 5663.3188 5432.0202 5530.2584 2843.7435 9472.9503 5097.8674 5361.3125 2060.7125 4629.0243 2816.9788 323356589 endoglucanase Carbon Cycling Carbon degradation Cellulose Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 7338.1306 5970.8196 2759.7002 3354.7121 4512.7305 3533.7734 87417.4414 4897.8308 4829.1645 3520.5582 5742.455 7605.8659 12721.0989 11546.7923 8404.5425 3032.7467 5307.3226 19651.5059 10303.4553 399985515 aln Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8268.2781 15244.9024 4885.4404 6755.1587 8635.1737 5467.9295 2898.5233 332377232 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5459.8179 10532.0014 373869265 ppx Phosphorus Polyphosphate degradation NA Gillisia limnaea DSM 15749 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gillisia;species:Gillisia limnaea; 6167.4732 7428.1111 3584.6407 73292.3566 3082.0901 8681.0396 5026.6333 4367.2424 8180.8956 5149.4067 6480.5536 2048.0808 4943.1021 149278115 amyA Carbon Cycling Carbon degradation Starch Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 5599.8996 6155.3134 156868370 amyA Carbon Cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 8879.9714 61775.2235 5227.5089 35663.6776 12537.6265 8486.2064 3907.2115 2588.6303 7498.6832 198263531 nhh Organic Remediation Aromatics Nitoaromatics Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 35187.1296 30025897 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5287.3357 59044727 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 6503.3987 8058.5044 2734.0309 12624.8078 5593.6059 17483.5563 6693.5346 2565.8515 2565.8515 5098.4652 5922.1647 4805.7491 3688.1924 4360.8965 4939.3927 2592.1145 2870.0587 3859.5072 373252491 pme Carbon Cycling Carbon degradation Pectin Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 7100.3088 7110.16765 9365.11685 46154.2481 12189.09025 5076.2071 87611.95105 6336.1317 3992.9464 15406.86325 8438.39215 5749.51815 13689.3579 6971.7866 4419.0656 3699.3827 9710.18075 4817.6459 19520.45645 5352.1361 5779.4761 8062.11595 254473604 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 5947.747 61980.7604 2367.8342 2367.8342 27531.0794 219849419 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 12483.6555 4723.0224 13438.9093 89486.05 6232.4801 3746.7141 36786073 arsc Metal Homeostasis Arsenic Detoxification Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 23167.3637 3952.6785 18874.3694 46519961 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5727.1414 3869.8071 3141.1981 27758.0213 3350.7705 69999.5487 7867.2304 9090.7733 5569.6745 3342.9268 5778.3279 2218.2371 6369.5844 8195.4443 4642.8858 5763.3879 2890.929 3826.5063 2186.7728 5648.467 328528641 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 20167.8382 10113.3265 5073.6692 2891.9466 2891.9466 5462.0641 6274.9356 6541.0884 3220.421 9316.5107 6516.8332 2006.7974 4954.8254 27077.5309 374610399 linb Organic Remediation Pesticides related compound NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 128372.2619 3507.0089 5019.6136 150835911 urec Nitrogen Ammonification NA Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 17558.2217 5185.3611 84193.4172 5095.2357 3872.2578 1959.2852 1959.2852 8950.5251 9139.0563 13419.4673 7220.59 2955.8304 4816.5058 5281.4159 5166.8061 2352.3851 197315675 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5801.0734 5045.778 12049.5124 4248.1075 3840.7128 4107.9562 3426.7975 5407.7877 70908.4694 37932.0362 4512.2627 2173.7913 2173.7913 4254.5419 8543.213 5212.1161 4151.5641 7214.6998 8499.5447 3069.8214 4251.5119 7570.149 2632.3203 10400.981 3984.9702 9692.5303 2291.6684 3358.5412 4832.7583 2560.0404 4612.5054 296014347 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 327079.9619 347526288 amyA Carbon Cycling Carbon degradation Starch Lactobacillus ruminis ATCC 27782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 14029.5227 3248.5458 214043728 ben_bcla virulence NA NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 91011.0555 2898.3194 7218.3614 5342.7609 4552.4685 74365.3781 6982.8241 5443.1113 4722.3957 2956.4604 2956.4604 10183.624 4479.022 3605.972 6366.013 4141.6486 16346.1988 9374.1991 4324.2412 6393.2087 5461.7199 3983.0351 5891.4011 6126.1973 145205128 soxY Sulfur Sulfur Oxidation NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 6602.6041 4532.2043 2940.0841 244894.6772 8695.1936 12986.0224 2828.6218 6161.247 2163.2598 258651580 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 5045.6728 9532.8444 5124.8855 4430.2496 9509.0452 3828.3816 4403.2148 8408.9403 60371.5459 5432.0985 6640.6673 47905.1229 6294.1394 6294.1394 11702.7163 8799.6084 5911.1847 8102.8842 2819.888 10566.1429 6024.4239 5600.8976 24218.2036 11705.1971 6825.5675 8836.9963 6290.6814 13049.6705 3291.8319 302394919 pme Carbon Cycling Carbon degradation Pectin Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 6508.6191 2615.6889 6354.8942 5087.623 67386.506 5159.8609 4009.0953 6506.7538 6213.1009 5453.9644 5867.0049 9259.6657 2847.8385 7825.9567 2216.682 10727.0238 6267.3484 9538.5734 2483.6584 5723.0426 5626.5865 2477.7964 90655622 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 5D20 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5491.2382 20466.5442 2127.0845 2127.0845 4252.2891 21324896 amyA Carbon Cycling Carbon degradation Starch Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 59991.4805 84600.1882 4186.3951 112197.4258 3634.0945 6176.0217 35733.6205 9290.8221 2999.2255 4513.7018 3659.1503 8534.1006 7711.7669 4683.1211 194335962 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 12428.542 2661.5094 9010.9561 3920.6023 5730.6029 4988.7449 5114.5571 10370.8704 10370.8704 5846.4827 5495.9953 10372.4946 12155.4954 25690.9917 10510.3693 10499.702 6355.6058 2892.438 6507.3407 8312.7191 2285.2933 15789.828 4572.3098 5280.5622 257219392 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5349.7108 5691.5395 3180.5615 2861.7743 6341.3147 4676.3713 4676.3713 3719.7941 6941.6533 2595.8763 1823.2333 359820695 mmox Carbon Cycling Methane Methane oxidation Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6622.7009 38591.7332 2555.2497 4119.5771 5679.3658 2636.3567 5887.2064 1844.502 1844.502 6641.7131 4664.8365 5128.0113 53875.6839 2526.0085 1676.547 3241.1813 30793459 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus ehimensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 203376.898 7612.706 297565602 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 6358.003 10289.4383 2363.9072 2452.3034 11997.3669 11997.3669 2531.5127 422314115 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6109.0909 44274.9056 3252.6487 4534.2272 2996.4123 3974.4404 4455.562 56803.7544 6500.5214 7922.3103 10737.9265 6623.4882 6623.4882 9381.7503 5075.2234 10583.4163 6668.6777 3669.4695 12180.5855 5641.5723 14024.4186 7617.5073 8689.454 3310.8451 4488.7782 9508.0328 11500.2953 256617288 endochitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecalis ATCC 4200 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 6409.4652 5242.7767 6447.3404 4311.385 97741.4189 26176.0299 26176.0299 5925.2617 7841.5974 12630.5462 4640.4545 2495.3022 6915.851 2765.1038 153241.0927 4693.9613 8200.1944 1987.6886 3769.7437 8356.2087 2292.4012 377561427 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 21914.8986 3844.6076 3837.6074 5052.9764 5052.9764 5791.3451 6350.3848 3951.2942 6358.4168 4779.4848 4708.3326 6050.0347 67540450 rgl Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5167.0946 4801.0911 3710.6115 2297.3655 3607.9077 79612.3745 6649.3577 3883.9363 4366.3146 8280.0212 6080.4273 4486.9663 6100.3001 7398.3797 2946.0647 3590.4256 8071.9892 2775.1083 12664.202 6309.4369 8072.3291 3115.5267 4266.2052 5538.8774 3105.8096 9051.4405 359394058 mer Metal Homeostasis Mercury Detoxification Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 8893.2297 5763.0523 14948.0251 36232.1935 2275.09 3645.8003 3477.6434 2336.3789 75400.7548 5421.3687 3404.2767 3404.2767 11647.6431 5928.3374 3139.1663 11472.1265 8173.4314 5288.0768 1598.4329 6467.1148 8181.72 6193.1036 110835322 ppx Phosphorus Polyphosphate degradation NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 6813.7997 15777.3505 29909.2057 3746.4241 4627.4794 79113.7798 3831.8086 3308.6167 3936.0907 3892.2117 3892.2117 2792.2287 9721.3688 12488.7072 5463.9575 38678.149 3909.2399 5080.7972 10020.5969 3765.0432 345835.3762 7008.0252 11810.5883 2204.3278 5940.6359 15690.282 386649481 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 193868.7157 211999810 amyA Carbon Cycling Carbon degradation Starch Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 27232.5146 328803878 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas veronii B565 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas veronii; 6920.4621 18803.3126 28020.1565 10101.5983 3051.3154 4358.2997 82532.6472 4510.9655 6677.8831 3812.7315 3812.7315 14185.4047 3655.1006 8174.8315 4911.2092 2695.2765 2711.2277 3619.1805 7956.9031 145208192 endochitinase Carbon Cycling Carbon degradation Chitin Paecilomyces lilacinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Ophiocordycipitaceae;genus:Purpureocillium; 79710.3511 10962.859 76446.2174 3383.2026 3383.2026 9436.9613 5588.4274 7923.3578 2673.7621 2093.7467 3512.3294 298248496 tfdb Organic Remediation Aromatics Chlorinated aromatics Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 136007.4898 6695.9903 388535627 cmci Organic Remediation Aromatics Other aromatics Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 7471.9847 3154.2018 15654.3839 101630.76 28556756 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 10508.0806 4468.4043 326318136 nitrilase Organic Remediation Aromatics Other aromatics Acidovorax avenae subsp. avenae ATCC 19860 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax avenae; 18419.1206 7046.7393 8122.2848 4129.018 164518503 tutfdg Organic Remediation Aromatics BTEX and related aromatics Desulfobacula toluolica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula; 8878.3791 5802.1158 3450.281 300073534 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 60051.0167 195508.0549 5566.4074 3747.4023 2128.2244 5552.1537 4190.1864 2320.7029 12352.2833 84663553 dsrB Sulfur sulfite reduction NA sulfate-reducing bacterium AR1103 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 17205.7733 10319.2948 6709.9964 2849.0604 2497.0035 4687.3432 5618.9575 6191.5179 96788.7101 12011.0675 7910.6376 13957.5225 6398.2361 6398.2361 9978.8064 7505.5029 4531.911 7461.1992 15473.0117 2487.7585 10495.1379 12308.7842 17356.7491 14593.2214 10591.9977 13814.3445 3544.0329 6877.0858 8258.1097 18019.4578 49529954 atzb Organic Remediation Herbicides related compound NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7523.3379 84778319 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12912.5818 3002.5285 4768.905 71906985 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6764.9391 6022.7406 6022.7406 114543924 PRK Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 46738.0814 36585.33 7331.7581 7818.2307 5259.794 2099.3096 2099.3096 4170.8359 7201.7503 8311.6655 3042.7199 8289.7159 149232839 terc Metal Homeostasis Tellurium Detoxification Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 5969.8522 6762.1381 6562.0605 5528.9374 153915.0101 3443.3214 3852.1269 2225.9328 2225.9328 3227.3973 42340.7398 6218.6471 6347.9504 18601.6247 11785.6643 6192.3237 5703.4001 2964.7053 3123.1743 2642.5491 6305.5973 32261705 napa Nitrogen Dissimilatory N reduction NA Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 232170.7057 139003025 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6123.209 3258.1474 8474.8292 8205.3393 2264.6662 10004.8665 5284.0454 384100048 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 8876.9771 2426.6752 6228.4119 2863.6288 2863.6288 4245.0288 5344.3885 3995.0701 8127.9326 3470.0148 312867744 pula Carbon Cycling Carbon degradation Starch Streptococcus parasanguinis F0405 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 127844.8432 3005.1976 6291.2763 2624.1669 2624.1669 4225.2429 6318.7219 5530.7079 3780.6468 1924.0412 2513.9215 3087.7273 4588.5467 112821111 rubisco Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 23432.866 38350.2002 372271045 dehh109 Organic Remediation Chlorinated solvents NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 59964.2263 6350.1624 33604.1723 77378653 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5568.5252 259508384 nitro Organic Remediation Others NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 12494.5476 9100.618 2203.9286 3568.9727 2589.5536 6198.5674 3745.8142 5992.9307 12452.1841 2925.6299 5098.6618 2417.3267 4356.8766 6298.2857 299797471 terc Metal Homeostasis Tellurium Detoxification Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 10950.971 142225.8938 22470.6576 3476.4729 13337.5134 6477.9528 12264.1115 5610.1939 116385.8562 19251.8759 14381.6317 4272.2617 4272.2617 3840.991 19641.7705 11386.6562 6650.8745 8307.9234 5403.9714 4172.3787 11296.5879 11122.9728 3844.2522 24172.9069 17161.038 10082.2548 5882.0122 6701.1692 8822.7096 4657.0956 8984.0947 374702228 cmci Organic Remediation Aromatics Other aromatics Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 53652.8762 12667602 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr617-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 732833.2026 2525.8636 12341.199 221069113 chna Organic Remediation Other Hydrocarbons NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8466.4941 5121.7856 22171.3681 30351.4086 3758.1577 5495.3909 8981.0947 10120.5632 2630.8091 67842.6198 7584.8401 14509.6409 14509.6409 4875.9648 13856.5222 3522.8566 10543.9704 2474.5446 11596.1885 9623.4114 2615.8833 3237.4847 5891.008 4446.0497 14232.9912 320102602 Sir Sulfur sulfite reduction NA Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 65024.4725 67540972 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 28300.2973 2378.7056 180581.9806 3786.2862 4616.1987 2126.9378 2126.9378 6471.4322 5972.9842 6208.114 3897.6295 240103447 apu Carbon Cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 36280.8714 2661.0731 23094.9844 3790.8991 254413185 tktA Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 5772.7673 88558.5376 2335.0554 5187.8417 363416112 ben_bcla virulence NA NA Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7055.1728 5030.9676 3321.9471 3814.797 2508.625 3734.041 2741.0488 6170.4873 4210.19 2847.0881 2333.3934 11371.8323 4949.0372 8907.9348 2509.8109 3067.9848 2296.833 402699454 nitro Organic Remediation Others NA Pseudomonas fragi A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 5817.6706 57885.3634 151366835 nrfa Nitrogen Dissimilatory N reduction NA Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 11562.0785 7233.2772 5853.3072 14645.7212 5099.3712 6146.6289 98157.8563 26446.9319 6244.0142 3381.3179 3381.3179 6630.7481 6115.1628 5698.0865 2361.6649 7740.5105 2849.4132 2205.5384 366088855 amyA Carbon Cycling Carbon degradation Starch Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 4938.3398 6155.9246 3055.2703 198268979 tktA Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 87048.8 6098.0839 3927.9378 4111.032 3156.7076 2328.56 2328.56 3186.0763 4886.4266 10043.403 2615.0011 6400.7225 6520.5817 3385.4427 3033.9107 2540.1091 169832337 dsrB Sulfur sulfite reduction NA Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 5805.3869 12386.626 11248.7849 6361.6592 10962.4827 56665.78715 9414.7743 11225.3357 9993.6464 182421.21675 15938.8674 12905.2536 23259.6218 10560.2596 19857.01635 10756.12365 29591.46215 6124.897 11555.3819 23624.74205 8688.78025 25148.3999 16754.99585 27674.2142 9014.48065 14465.1364 11529.08055 9875.23635 12763.63365 226939965 urec Nitrogen Ammonification NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 9321.3275 10555.3983 2937.8468 2468.778 14094.1623 14094.1623 6731.1123 7623.8995 3861.447 5077.8315 4287.4757 100954.2369 256582982 ppx Phosphorus Polyphosphate degradation NA Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 29497.9921 21945.5495 4894.3635 4329.7803 10957.2627 9289.5485 2455.4831 2455.4831 302420557 cpna Organic Remediation Other Hydrocarbons NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 17331.9802 5331.5433 20652.1183 2448.8109 6202.2834 6304.7023 6237.627 100354.8049 16347.0886 6106.7976 16413.8036 34139.0346 34139.0346 3976.6103 8153.0044 5702.784 4875.3984 2485.185 4762.5866 11804.246 2990.402 16731.0334 6290.0673 14201.8737 6982.1067 6745.8055 9414.235 3035.9962 4807.3988 110592183 nirs Nitrogen Denitrification NA uncultured organism 9761.9055 4244.0597 3678.4046 5185.4489 229842.0041 140713835 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 7130.0853 1998.0596 1998.0596 3433.5803 3317.503 1946.8174 157741864 rubisco Carbon Cycling Carbon fixation Calvin cycle Mycobacterium sp. DSM 3803 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 14175.9233 4201.1183 2803.0913 5009.8102 30961.5842 8769.0807 4782.0059 6080.9652 6080.9652 2803.0936 8974.2734 6276.8052 4506.6603 6069.5454 3093.2094 2553.7593 6714.7457 2475.9464 13328.3231 6170.0287 7480.2603 2225.7904 3546.7598 3857.623 359733436 cmci Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 366299.7352 12557.7849 2679.1224 9185.6949 7597.6873 269785788 cellobiase Carbon Cycling Carbon degradation Cellulose Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 8702.0895 3615.8672 6446.4654 3224.8948 2181.8276 2181.8276 2717.3257 4425.7366 4845.9904 5258.2051 6980.0722 14071.8265 7641.4064 6942.7924 2256.4649 3217.9844 4023.3801 6051.5335 383818773 badh Organic Remediation Aromatics Other aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 7297.1423 28124.3107 2953.9505 3887.6359 4939.8051 6853.2212 4414.6107 59426.591 3831.9498 2967.7907 2967.7907 9514.0352 7551.5945 4453.9562 4190.2608 2575.707 5412.6103 11219.7293 4082.8503 9941.8391 2762.9475 2983.3383 5098.3524 2515.6113 5372.5542 91699875 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 68735.4218 3798.7396 12106.6438 65868.7228 4098.7341 5827.4361 5827.4361 6514.4499 4806.9886 4353.778 3286.4553 4378.1426 29044.4987 4214.3736 18988.7839 1830.6228 5673.1712 8938.2412 6186.3716 71383846 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 49634.1044 11379.0523 352685594 ppx Phosphorus Polyphosphate degradation NA Acidaminococcus intestini RyC-MR95 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus intestini; 6583.6896 11802.6265 3558.4036 6229.3979 5277.4162 5035.2719 3907.3801 10147.944 35212658 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 55208.1348 4015.6264 106968.686 6599.8852 6797.8827 24229.4136 4268.1108 116098389 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 5784.3232 7558.857 12547.3734 2947.6107 10232.3589 3035.0591 4414.4716 9908.7749 2708.4196 5896.1682 4869.0536 7271.76 2179.4097 8523.398 242207811 Dyp Organic Remediation halogenated compounds NA Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 1276406.2496 79106.8245 7268.0877 10415.3663 6321.5233 6321.5233 3856.9226 298515414 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 10265.1034 183581739 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 5486.1148 2332.6468 2332.6468 2492.4357 7866.2902 133778494 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4954.847 216932 aln Organic Remediation Others NA Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 14898.29835 15082.92235 14081.6291 22361.3016 48213.24245 24503.8377 38766.6572 42572.3065 30146.52145 70732.9503 30920.0531 16293.71385 37026.7417 31833.47445 29026.4767 25675.45885 38303.2182 218267437 atza Organic Remediation Herbicides related compound NA Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 8314.2655 2326.9859 6664.2948 3372.9649 5531.5377 6516.945 27612.4846 27612.4846 8242.9587 20312.6812 8749.7911 14419.8751 8179.1647 2807.6891 5539.6797 12303.139 12615.8293 2866.0392 3834.6609 12459.3297 332829.5493 211582763 aln Organic Remediation Others NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5995.9866 6041.0048 11646.1698 2684.3037 4171.6735 4104.0412 78449.0871 7067.2862 4489.4546 5701.4238 4188.2376 5649.1311 7715.9861 7291.8531 2250.7479 3571.6446 3187.2604 2835.6241 9253.2718 160934473 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 6780.0205 2564.6915 4659.3493 183982433 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 4317.0429 11858.0276 2143.141 2143.141 15008.8617 4813.0505 392950976 xamo Organic Remediation Other Hydrocarbons NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 39451.7819 2396.7687 2407.713 2407.713 2426.1187 151302188 APS_AprB Sulfur adenylylsulfate reductase NA Desulfothermus naphthae superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfothermus; 33453.4017 5627.0686 3205.9336 2232.164 6659.5374 2631.9952 4522.6108 24261.8523 4655.5513 3615.2395 7115.585 7115.585 3317.8305 8935.118 4946.074 5640.5652 8577.7128 10174.0663 2674.4456 4369.0211 6416.5266 45158.5505 8365.4754 6415.1634 2401.6006 2869.5242 3418.846 2393.889 93931.8885 374853663 atza Organic Remediation Herbicides related compound NA uncultured Chloroflexi bacterium superkingdom:Bacteria;phylum:Chloroflexi; 66745.9034 3517.2192 3763.2736 2258.2443 2258.2443 8703.7143 6945.7932 2894.8402 5781.8402 3419.8258 3641.17 299539561 terc Metal Homeostasis Tellurium Detoxification Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 6081.3665 4187.406 3895.9349 4941.3599 385881722 amyA Carbon Cycling Carbon degradation Starch Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 10488.7429 16024.6694 3775.9294 7581.1839 5913.5156 3875.7058 5245.6013 282156100 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanocella paludicola SANAE superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 6775.0209 2385.4309 289587.089 3237.9981 7151.4523 2023.4351 5703.3773 2117.8354 338804855 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 234054.6824 4981.7249 93455471 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 28667.8614 8555.9187 366053676 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus suebicus KCTC 3549 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus suebicus; 385491.0528 25988.1873 2712.5946 336297915 beta_agarase Carbon Cycling Carbon degradation Agar Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 14368.5845 9061.9632 3273.3225 17199.7272 117608801 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 138660.3806 357406550 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 11750.3787 6053.2594 4418.1307 23361.2763 31606.395 22987.2846 5310.7653 4691.6102 6957.3367 13188.7568 7853.2117 7853.2117 10196.526 9730.6319 6071.02 40374.2862 7233.9706 4186.2705 5473.4127 52223.8554 11416.3192 16225.8691 14859.3163 8859.7144 35629.1862 16834.3632 6800.3193 8335.9488 27909.3431 363987226 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 149311.3572 8844.1295 7903.6145 19354.1896 9872.8452 35159.4661 19623.944 11331.1571 20553.6809 20553.6809 84349.5173 11474.507 21764.6556 11195.6427 9005.676 7329.4874 37508.1529 30144.5237 10792.1145 6904.0369 55965.1433 9996.3185 17332.3287 252488.7521 324974894 xyla Carbon Cycling Carbon degradation Hemicellulose Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 6631.8141 17078.9222 46917288 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16586.9179 4980.9784 2558.4576 3623.2846 4767.528 3969.367 6060.9953 5711.0774 2716.1427 6672.7809 2333.3376 114705878 arsc Metal Homeostasis Arsenic Detoxification Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 12028.6667 10082.5975 41046.27 22578.2396 6486.9354 6706.6797 2736.9211 70389.7099 16093.6731 6198.3751 2391.1295 2391.1295 3640.1042 16677.6966 4826.4377 5647.4689 4194.9325 3371.7911 17377.399 2792.5708 201782.916 6637.4161 2387.868 3340.7396 5200.3689 8102.91 403201504 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 5492.3462 2128.6902 60227.3689 4325.74 3097.6867 9400.8863 109201.3903 4314.1657 7225.4774 4113.2712 3364.6379 8338.6519 3468.9654 10163.1854 4976.7238 8475.1512 4653.9155 3016.4232 4337.2014 3223.3229 94471345 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28274.0653 7399.1951 7399.1951 118424433 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7065.3463 2455.0387 95115933 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 16769.724 381380585 exaa(moxf) Organic Remediation Chlorinated solvents NA Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 11624.2652 6133.4018 9162.4314 64706.6427 34572.2888 4627.3346 3577.3439 3577.3439 6623.1723 4222.6086 5722.9669 6663.6191 6813.6127 9444.448 2162.6089 312922904 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 101943.4709 2134.1079 2134.1079 6526.0228 36140.085 3158.2295 1806.0854 119483824 nitrilase Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5844.0678 3451.8362 4169.93 3756.0268 4258.7363 261857013 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22648.3892 10977.8367 124516034 sqr Sulfur Sulfide Oxidation NA Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 53602.9575 7585.4058 4191.3584 3303.041 88963.7891 4442.9555 7880.4028 2443.8936 2443.8936 5033.0384 7039.5258 6965.6072 23964.9511 6070.7268 9475.0099 6650.4663 6766.6427 2332.594 11283.7435 3385.4055 332298316 cda Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 96888.7822 21974.1294 14100.7948 6901.44185 29097.9937 223309.81775 19715.7007 13615.74185 14223.4761 18470.07145 14531.3064 6777.20055 148474734 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6543.6285 3374.2784 374568885 B_lactamase_A Virulence Antibiotic resistance Degradation Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 26079.7734 116668980 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 40560.65 11241.584 23483.4843 5775.5234 2115.0713 2115.0713 4974.0983 5961.2895 254488610 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9477.6734 13160.6809 11154.0839 4048.4243 5310.2789 31692.3997 75758.3621 8395.5174 3985.7683 3985.7683 3266.9136 7063.3816 3662.2356 15707.4898 10848.3698 5102.2226 15382.5911 7776.0658 15612.8675 2522.1526 6651.0262 13020.2489 8235.2477 315453812 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter felis ATCC 49179 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 5439.9302 2852.9422 3989.6081 7298.2243 6380.3045 5388.6175 7402.9303 10227.8824 3087.3984 6170.3369 2515.1489 9436.3475 4061.9205 6625.7052 3468.394 5002.023 5771.5326 385867132 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6528.8933 22460.3859 4018.965 2335.885 2335.885 5769.213 1774.3334 7010.5478 253985125 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylovorus glucosetrophus SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 14246.3661 535792 amyA Carbon Cycling Carbon degradation Starch Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 5527.8367 20817.4886 37152.9329 16480.1356 2133.7299 7336.8062 9535.8216 9253.7552 79678.2038 6662.239 14353.7249 8333.0936 2615.8233 2615.8233 3801.4309 11992.6235 9213.601 6388.784 9911.2815 5882.7808 125754.9768 5060.1381 9662.2825 15618.4657 19083.6111 4466.9271 30131.7181 4813.9965 43308.8423 8003.1012 14441.9525 323093078 ppx Phosphorus Polyphosphate degradation NA Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7082.0497 5194.5762 10449.6625 3549.2529 2585.9708 67212.564 7560.1969 11764.397 4835.2703 4835.2703 6724.0889 5085.1171 2716.754 10462.5606 9321.8638 8630.0046 6420.3159 2779.0679 371956778 amyA Carbon Cycling Carbon degradation Starch Prevotella micans F0438 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 411147.7116 4497.6135 12998.37 2758.6036 11532.2747 6870.4973 14876.4222 3032.6841 3032.6841 5964.1855 5041.4101 7856.6748 1590.5463 3324.2529 82799231 xylanase Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium superkingdom:Bacteria; 452287.2713 35867.4939 4752.1862 167574595 aoxb Metal Homeostasis Arsenic Detoxification Burkholderia oklahomensis C6786 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 9343.3113 8500.9966 191437.5206 2121.2072 3320.795 3564.0631 93720.5181 3875.4178 4708.0519 227926.8644 6126.4709 3336.4522 685752.2589 7476.5016 6476.5562 10309.8621 3149.4962 10332.5162 3878.7075 4958.2683 3071.5628 3788.5364 11477.5541 5225.8259 4846.5691 259147601 Sir Sulfur sulfite reduction NA Saccharomyces cerevisiae EC1118 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces;species:Saccharomyces cerevisiae; 15277.3936 90413891 nitrilase Organic Remediation Aromatics Other aromatics Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 84759.7704 55481.2717 5312.207 9335.1699 7799.4154 3932.5494 25624.4678 4348.9595 5896.7019 2516.3802 16812.0383 6026.768 11154.6523 2558.4002 2540.1552 3582.3502 2757.9071 6815.9914 261409983 endochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 34652.9145 3322.7749 2489.055 3320.736 95428.6629 8387.7823 4585.1087 3702.7015 5094.6073 2638.5701 7150.5191 2956.8091 7874.7208 5501.0461 1786.1171 3249.3229 3489.0366 2583.8125 7297.6293 84778387 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13220.7331 9577.1989 4827.4719 2294.4416 3856.0205 2166.4234 12285.4482 7293.2584 28422.5278 312135915 xylanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor owensensis OL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor owensensis; 24083.094 371445072 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 6292.2922 3946.4702 4803.5343 1992.4229 3706.9814 325553659 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 5991.5762 93917.137 6859.7484 15036.9575 19878.3125 38164.7786 496549.1516 19237.8796 30639.5524 8996.063 28814.4343 26151.8762 14063.8867 22420.6313 66292.9267 20895.0316 97060.2251 42801.294 28768.2778 14664.1091 7740.5605 107172.3646 316948377 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 8454.05 3078.025 4890.8081 135336.7833 5201.9598 8847.283 3886.3393 4398.607 6641.8558 4881.3699 2685.1868 2756.9404 3958.501 8428.4414 2763.1777 4843.0563 323364852 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5593.6086 2638.1927 1922.5651 5066.7346 4187.9949 76563.1904 4217.199 5363.0635 4020.5922 3360.3333 9523.335 6806.8842 4629.018 6048.3777 2469.1919 6599.8866 10491.7163 5877.0169 7648.7567 3524.1086 3743.5523 2194.7202 6697.6369 157917577 linb Organic Remediation Pesticides related compound NA Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 24048.9605 1959.6676 1959.6676 124200.2097 224603738 cmci Organic Remediation Aromatics Other aromatics Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 6329.5108 284504808 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium funiculosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 158428.8408 78572.3119 3021.9108 3593.8426 1829.6081 3413.7678 3969.9775 120590551 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 30628.9477 4145.9914 4101.5615 4101.5615 145590793 tmoabe Organic Remediation Aromatics BTEX and related aromatics Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 43839.6533 78149.3351 3115.6093 5254.1784 41622.957 12730.1809 8888.4577 34892.9971 315593600 amyA Carbon Cycling Carbon degradation Starch Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 5462.7357 2164.4476 2186.8534 5785.1231 6174.7776 2703.4713 2479.4483 2182.2911 109632429 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10426.2279 7800.2765 4674.0255 3673.751 6549.9923 3828.2742 5324.914 6149.4265 2580.3457 2580.3457 7604.5795 7125.4939 6772.8678 5488.91 8157.0049 5872.4061 2154.0649 11308.518 7176.0527 7904.9635 4530.0663 4105.3541 2386.2827 384431591 SoxC Sulfur Sulfur Oxidation NA Thermus thermophilus SG0.5JP17-16 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 5981.3577 352085469 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter sp. 2APBS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 7265.5638 11265.8208 7834.2479 5413.3199 3075.8928 3075.8928 6662.4046 10744.6508 335865015 arsc Metal Homeostasis Arsenic Detoxification Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 15134.0891 3112.9094 3685.3219 4303.506 4654.486 27387.2759 2965.0704 6420.0073 158138777 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 11913.2855 19683.2355 7733.2522 163962112 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. 1B04 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 39443.4725 5345.3078 270284319 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 6526.0746 34573.868 8613.6033 5733.0208 6392.7486 5097.7154 19870.8993 6809.2689 5372.1588 7436.4876 4291.2553 4291.2553 9471.4694 9008.7615 5902.1999 8655.7397 4823.1817 17680.8998 36173.774 9405.4992 27660.6695 10157.1668 7664.6369 82547.2496 5725.8375 36042.9306 13116.6618 2944.9145 68190298 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6758.549 3834.098 4035.6713 2495.3821 6440.7398 5471.6691 1973.4682 1973.4682 3235.8619 4421.5276 4352.8244 16766.1869 6162.8996 4755.6499 3113.7577 4477.0297 325677268 xylj Organic Remediation Aromatics BTEX and related aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 13376.9456 29913.4032 6848.1093 13637.3948 4907.6297 4025.4109 158413.7547 6910.9315 9577.9992 14621.4296 38067.5225 38067.5225 11577.6794 19223.5879 17647.4415 5247.1168 7456.8093 16562.251 14209.7636 35081.8698 7827.2152 466531.2715 21813.9038 76860.961 5298.5884 5692.104 8417.7932 2602.988 167656883 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 5302.0073 4568.4331 33010.5719 5253.7878 2229.9553 3579.4451 5707.2837 3658.4451 7670.5965 32967110 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KL28 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6807.77 2442.1377 3597.6076 602573.836 10894.1911 10894.1911 5073.1483 4569.0572 5094.3969 6088.6113 51468942 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 138616.6147 11629.7839 3629.8995 6510.744 2820.5859 7347.7464 5595.4059 2708.762 2708.762 3025.9559 4198.9544 3851.2165 6304.4929 2377.2948 3993.2114 2439.4722 5929.7491 3381.3302 2009.9799 222528620 xyla Carbon Cycling Carbon degradation Hemicellulose Anaerocellum thermophilum DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor bescii; 13647.1046 172037789 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6359.383 4764.292 2628.3171 92516.6795 4039.6944 4073.0856 1682.0883 164456164 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 13726.6352 10367.4655 22777.2553 7923.5184 2949.2091 5959.6002 6776.196 2638.0274 6700.7954 4107.253 5180.8475 7226.7996 3346.049 2966.3268 7580.4047 340027049 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10704.1665 18886.47195 32665.0973 36174.2695 37017.38045 304468.1122 26457.9398 14042.2232 18259.0759 73584.5984 11933.5253 11163.75825 22156.29615 22988.62995 42793.0765 31213.975 336027046 mer Metal Homeostasis Mercury Detoxification Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 5324.5213 2570.288 4870.1352 5080.2008 2932.5592 11747.6304 11747.6304 4896.1257 3862.6872 6594.453 4883.7125 2553.6249 6999.2334 12916.0529 4420.6076 14073.5096 219548401 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 38719.3229 12513.2811 310766215 cysJ Sulfur Reduction NA Erwinia sp. Ejp617 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 12011.6282 3090.0205 313104776 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5083.7211 3426.3032 5500.6595 4699.4008 7118.6591 6037.8489 3860.128 6184.3226 5296.73 1962.3423 8600.7091 5640.613 1562.8983 5332.336 7103.8833 29384.9517 300869560 PRK Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 31468.4679 229785071 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7413.6791 4456.803 358456915 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 89437.7918 4855.147 2492.1915 1978.8862 6728.2537 5756.665 4883.2283 23117.5449 5701.9853 42044.8154 126358780 terc Metal Homeostasis Tellurium Detoxification Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 8085.8739 2141.2492 2141.2492 11510.9922 1609.905 343502767 arylest Organic Remediation Aromatics Other aromatics Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 25856.8819 3752.919 401773752 nfsa_2 Organic Remediation Aromatics Nitoaromatics Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 33695.3716 2476.8108 7076.8565 4795.8687 9732.967 6366.2891 7351.8438 11194.2198 11194.2198 35038.5413 2880.581 25118.2811 7853.1327 3957.0108 8419.7249 5647.3303 6054.2986 2113.2124 2719.9132 5156.7285 6851.5783 311891027 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 6185.6388 5493.6235 3965.7182 4455.0848 6209.2778 117771.5031 5737.4723 5996.2633 8268.353 29451.2839 29451.2839 3609.6779 6800.2907 12194.8064 3179.4007 6564.1295 10583.5469 10514.7322 22389.3022 11790.6383 7270.5301 3421.4984 8656.0849 51535.6858 158139618 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 66553.9081 2593.2409 3294.1788 3294.1788 197220.0112 9044.0516 386421737 fccab Sulfur Sulfide Oxidation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 6529.3265 8611.925 8101.9542 7716.4914 8541.3744 3485.5227 64514.377 3468.0565 12103.5191 5598.477 8761.3514 2999.4643 7067.4966 5435.4732 15775.527 6182.4466 6413.0558 3259.8142 4127.1665 12375.7149 5224.9482 380739132 cysJ Sulfur Reduction NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7386.7823 3704.7782 3505.9895 11133.6066 4452.9892 3647.3723 6818.5773 8373.0562 6426.7471 4658.4652 4760.8336 10516.3799 2833.348 3070.4504 7214.7198 5625.3074 11343.7382 4979.4457 5799.5459 2051.5877 13304.8091 5841.1301 6669.3837 332014210 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 35358.3296 3779.4387 7212.6547 5909.2974 357404859 amyA Carbon Cycling Carbon degradation Starch Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 17098.1988 12039.3851 3293.6543 4299.6656 2089.6364 3769.3634 21782.3205 5135.017 89517.1308 4249.8228 4026.1183 4657.4098 4657.4098 2731.7934 30108.6472 5065.0178 4955.5969 15217.8385 6790.4718 3980.5181 6970.5625 6211.7595 2845.0484 5949.7348 5265.2349 2977.5322 343178708 xylanase Carbon Cycling Carbon degradation Hemicellulose Caloramator australicus RC3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Caloramator;species:Caloramator australicus; 10753.2156 2200.439 1645.0485 161330760 atza Organic Remediation Herbicides related compound NA Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 143275.3486 4373.1951 4649.4692 6195.915 7354.0738 2523.998 94983211 silicon_transporter Metal Homeostasis Silicon Transport NA 11771.1106 18030.6904 307727106 cmci Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5561.1393 7559.8099 4721.2771 4661.3169 4319.1186 2393.6338 2393.6338 8480.6685 2339.2678 2307.8436 46114091 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 229056.6604 7125.2774 3833.82 38373201 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4840.1252 7430.8683 8470.3189 3025.1609 5813.5399 19186.8703 5944.6069 9726.8381 3404.2899 116857.2811 9862.5199 5433.471 6479.3624 4471.9801 4471.9801 5193.0268 13714.6087 5824.8682 5563.3256 7745.477 4580.4193 3029.4607 6015.2606 15754.8553 3718.69 18908.7912 8585.6951 14615.5462 3532.2209 6035.3586 7502.922 5372.3901 9990.4168 71842736 linb Organic Remediation Pesticides related compound NA uncultured bacterium WWRS-2005 superkingdom:Bacteria; 5925.1445 3336.9567 5812.5476 4471.7493 6236.8579 11792.2501 11792.2501 4928.6226 6761.6208 4228.5744 2731.4702 164455260 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6391.9057 5416.9252 4489.4838 3442.2679 4516.2246 4431.5779 5094.2252 2087.3103 2612.82 3631.9254 335999241 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. 1.1-VEs superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10728.0108 11103.9817 9873.2449 3111.3711 4066.716 4108.382 26847.3384 58177.1695 6380.5372 10596.7158 5715.6608 4342.4321 6391.036 2652.8306 3080.3355 7416.9077 12218.7179 9217.9423 14603.3713 7019.5428 4070.243 6614.4565 4744.1693 4541.5602 346644397 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5527.7862 8388.5281 2082.1494 2082.1494 6143.6921 2741.359 254422374 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7221.5309 28376.7531 2056.804 3123.0028 3431.4648 4966.8057 2437.6269 73514.3251 5396.2079 4296.1027 3179.565 7961.3923 7690.012 8424.4992 33142.9535 4074.0708 3103.9965 6500.1167 9251.7445 7928.4491 1999.9882 2926.0729 8131.0986 9062.3356 157780220 hsp90_Choanoflagellida Other Phylogenetic NA Didymoeca costata superkingdom:Eukaryota;order:Choanoflagellida;family:Stephanoecidae;genus:Didymoeca; 5787.4927 22449889 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 73552.4301 2416.872 2987.8151 2012.5239 4531.7189 7243.3521 4837.8706 4194.3967 4727.9777 5366.1426 2811.1686 9865.7031 5469.8642 1830.4394 2542.6638 5877.7068 87199507 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 15140.5151 311890178 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 6951.4671 6043.4611 11168.7418 7721.11495 3366.8305 2611.8307 4750.90915 5801.5723 4059.22565 61698.44485 7389.05465 7988.7695 4954.6187 3317.4278 3317.4278 3955.63485 10791.7695 7735.70395 5941.11645 7607.7567 6471.0314 2771.4222 4624.39255 9078.1468 7028.49305 13561.76205 6129.2048 10477.4466 5931.98365 8497.19395 3436.65925 9566.8749 302413557 lactase_fungi Carbon Cycling Carbon degradation Lactose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 7927.2808 11819.2387 99973.9119 7800.1902 9871.8477 8212.8506 26760.5114 8744.18 12091.2674 6982.4981 190113.9596 43854.712 7728.8121 11361.4878 6187.9196 6187.9196 8327.8284 10405.64505 12309.8312 21315.4551 10993.7571 12540.2076 21786.7574 22576.61415 10267.80615 12055.7332 8358.1438 10043.0401 18821.5109 291594253 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Enterococcus faecium E1679 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 6847.2588 5982.4856 3772.2331 3772.2331 75920.3018 8759.7715 88890.7795 4942.6281 5945.2484 2135.9294 86359036 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 102191.7009 4735.1179 257802726 xyla Carbon Cycling Carbon degradation Hemicellulose Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 6575.8491 4752.0204 3813.5939 3813.5939 3340.2244 9867.8924 13422497 linb Organic Remediation Pesticides related compound NA Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 265820.1874 10098.8195 16522.5059 3269.3537 4054.1479 5734.9196 4214.1536 12267.2127 5003.6349 76292.8155 5512.8754 5436.1331 5633.433 4844.6657 4844.6657 9682.2329 166015.047 9131.4512 7838.9681 10458.5284 5073.3493 2652.4762 29444.7691 4210.152 10838.9841 19041.2146 15226.1226 9205.2835 209960678 linc Organic Remediation Pesticides related compound NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 12177.8502 31894.0467 28372.0705 2606.4786 3576.1216 4062.0166 4517.5373 231165.9466 4909.9025 9317.2193 13276.5944 12004.1944 12004.1944 21239.7535 12211.1668 14759.2345 15408.8529 8634.4951 17719.9065 6883.9897 8356.3779 20567.2317 19610.3376 33792.6801 19404.7308 9090.7131 11458.9306 7439.6785 7845.8577 20791.4559 336262148 phenol_oxidase Carbon Cycling Carbon degradation Lignin Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 563827.7379 2582.7169 2735.8234 2683.4658 4725.0586 3308.8654 61556.9902 5486.5797 2326.082 2326.082 9416.7819 4144.2104 38653.7399 11378.3527 4537.7096 3405.5913 5367.0958 6286.3001 2984.3713 8837.9468 7330.1982 6169.6427 4126.256 4455.0656 3609.6196 7304.5919 383190455 xyla Carbon Cycling Carbon degradation Hemicellulose Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 5595.6204 224537700 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 10360.1703 2505969 EF1a_Oxymonads Other Phylogenetic NA Dinenympha exilis superkingdom:Eukaryota;order:Oxymonadida;family:Pyrsonymphidae;genus:Dinenympha; 6459.0555 289471241 dsrB Sulfur sulfite reduction NA uncultured prokaryote 33349.6432 12127.7588 2569.9019 72523.1842 5754.4313 2961.9871 4220431 phdci Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 6878.9304 4747.9962 95754.3081 7126.444 5321.5798 3334.3562 2974.2176 7020.7116 3826.4497 115748.6859 7432.7465 9163.9418 9663.3215 6665.0957 6665.0957 3764.2904 9901.6266 4617.8423 5594.3171 38091.2122 5798.1132 22269.5529 4248.2671 9595.4712 11092.2211 10415.0575 14109.8482 4788.6549 9643.9027 208605076 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 65115.0219 4782.9964 6528.528 2671.2507 3619.1732 4584.9302 4647.188 2173.4288 2173.4288 3066.3284 8855.5876 5451.0258 6030.5774 3900.6347 2700.0526 2817.1974 7277.6062 2187.1536 12832.2906 6022.56 10487.9626 2862.6593 3675.6816 4513.2326 2656.8702 6338.4467 90336551 TIM Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 42776.1895 4545.455 6479.8379 6485.2476 7827.1804 5742.483 29924.0823 29924.0823 20294.7671 35381.0465 8058.4117 4137.9903 4488.5491 4480.7495 3552.0198 2537.4409 7448.8829 5060.9006 1884.2928 4011.1863 4569.0511 3344.1523 41855.2722 422314379 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9237.0557 5468.5243 3844.2239 5672.5618 145242988 rgh Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 10793.3032 6851.7982 32357.0565 22574.7028 16026.1818 5766.2691 4513.5738 5388.3919 3840.5006 73087.4908 4045.6131 10231.1776 9206.2715 15344.0688 15344.0688 12903.1026 5875.5336 7255.5245 6202.1432 3845.0704 3844.6247 13889.2042 3676.1746 12410.608 12113.5776 7650.0658 2776.5036 3910.0738 3610.9404 13160.9341 118424329 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 589046.2823 101346.7444 5212.1901 4433.4951 121699582 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 33264.7596 8301.8468 13744.6359 5021.2009 3937.0014 3419.3549 83425.2548 8851.9078 6237.4071 8581.8537 6551.5657 6551.5657 3868.1114 9072.7106 6017.0895 5932.9313 44395.8224 7685.3094 13031.2388 14459.2246 25226.2559 7243.8156 23350.8703 2161.1153 34121.8604 3516.415 4956.736 254465095 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 994613.6898 121564.599 10707.928 5086.521 225162604 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 5235.6199 4796.8645 3567.0455 4327.6362 76865.8673 5102.1579 4145.2107 4145.2107 21803.0969 5255.3054 6187.4244 4343.7459 7015.0018 8481.737 8775.3402 2040.372 3042.5023 4468.8856 2822.1411 255708192 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 97577.5591 6779.5308 123509.8468 6071.4631 2742.5751 4816.3292 7979.1391 5662.7051 4281.6011 63458.9335 3906.7205 4123.0418 5901.1323 9871.6924 9871.6924 3723.3155 2658.9879 3248.4683 7610.0436 6165.1734 17987.0667 8546.534 6123.1433 2921.1221 4311.5888 3519.9847 4686.0407 350551732 soxY Sulfur Sulfur Oxidation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 20496.985 6374.0118 4926.4035 6185.9764 11016.22 8052.4948 65515.1415 9082.3502 13260.593 5326.6653 4933.5187 4933.5187 5075.0686 13732.4412 5227.916 37329.471 7586.7706 19060.4181 4423.135 8492.6786 4765.4637 15933.0468 7723.9094 12704.1539 3960.8005 5435.1518 8053.9137 5517.2316 8900.7332 194538632 nrfa Nitrogen Dissimilatory N reduction NA Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 17739.5055 3000.5482 3592.3416 4401.5438 4434.9677 4566.0372 5239.1268 11866.8007 9273.8117 5096.6487 8037.8439 6145.664 2698.004 3383.8537 6771.3323 2266.6257 15298.3294 7291.2627 8884.9679 3960.8034 4479.8747 3945.5643 2713.1808 12967.9906 224539129 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 14779.709 89241792 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 7286.341 2465.3769 2465.3769 371760659 amyA Carbon Cycling Carbon degradation Starch Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 96329.1601 4096.7403 324970872 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 4719.3002 17489.5035 2201.2337 3731.076 6395.757 3193.0566 3193.0566 8424.9053 4337.8685 3291.9071 3123.416 2563.0077 159046016 pcag Organic Remediation Aromatics Other aromatics Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 8501.8614 6268.4356 2146.9793 2146.9793 2994.6112 12198.9585 3953.5323 6271.5861 2197.0708 308752988 cysJ Sulfur Reduction NA Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 10599.5686 3857.7223 2605.2615 1609225.3393 2318.5192 2318.5192 4091.3961 62170.793 11084.0863 5594.6232 1577.43 2960.1809 21612.0314 5061.0853 219719652 nitro Organic Remediation Others NA Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 924412.3479 521515.8688 33938.1791 2881.8169 12113.1662 24466.4487 77055.2718 5008.6652 4242.3183 2349.6235 2349.6235 8198.2285 2274.2649 4722.5546 3887.768 12950.6071 7032.4662 3661.2288 3556.2597 7909.9442 46307848 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9990.3225 3236.823 171059782 exaa(moxf) Organic Remediation Chlorinated solvents NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9416.7719 6866.2878 47254.0351 4811.5081 4613.9356 2628.4211 219784536 bphd Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 5623.5977 2392.2933 5585.6482 3795.7731 3827.0832 8029.7091 12189.8813 3462.0907 12108.4352 6129.1007 6636.883 2882.4672 3757.9072 2944.067 2656.2981 408420643 phn Organic Remediation Herbicides related compound NA Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 13007.3434 4413.2409 256361214 cda Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 16491.9073 10462.3729 20298.9015 278665.30295 20525.86985 12271.24725 22300.6208 21322.6191 16363.43695 21594.4757 18098.00215 258558017 cda Carbon Cycling Carbon degradation Starch Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 9117.105 4621.6398 2197.3454 2315.3865 5931.6049 3332.8216 975759.2147 4308.9787 12583.5413 6417.4819 6417.4819 5889.6333 5917.6495 27567.0677 7587.4988 6480.1906 2772.497 3721.3193 10768.7224 2936.742 257080368 cellobiase Carbon Cycling Carbon degradation Cellulose Enterococcus faecalis E1Sol superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 6334.3582 3329.1253 383823799 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 13324.6312 3881.4744 148502891 limeh Carbon Cycling Carbon degradation Terpenes Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 35302.2522 119225916 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4767.1016 7736.8888 12549.2978 19749.1218 5634.3527 8064.1217 4599.563 4527.7073 5153.7904 324708.3382 5740.0727 9918.8304 13677.2601 10948.6349 10948.6349 3789.6949 5582.0085 6135.7378 7545.0955 3666.4478 2468.6705 8759.1914 12109.4887 3975.4545 31696.2497 18914.6037 5143.4635 6535.9358 6777.2891 2037.3935 82618379 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25833.5897 1922.1432 2331.5791 3245.6671 5227.0534 6853.235 3891.6011 3891.6011 2590.6265 3945.7654 11307.2951 3635.3829 2463.3583 3757.0195 5216.9252 12530.7679 3096.0194 2035.0947 134053793 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 377414.5408 7975.6842 145591441 dsra Sulfur sulfite reduction NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 12021.2496 7145.5241 3250.811 5559.792 3857.9449 4198.0573 2759.0324 146915.9204 6393.4729 3128.3803 6989.7043 4041.8716 9641.6661 7083.4248 4646.2889 2410.1968 7315.7483 5475.403 7006.4883 7707.2362 5905.8188 2444.5532 6760.0409 3940.2844 2502.0085 357941172 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5483.4015 9922.5473 6917.0422 2555.6725 3174.3063 4535.2537 2765.6955 84919.251 4230.8341 9135.988 8853.3731 8618.5584 8618.5584 2699.7794 5364.6187 5123.1276 7906.6502 5347.4176 2521.3998 3627.508 9054.3166 32483.7881 9568.7893 7826.7612 8822.0401 2521.4294 5497.0147 3299.1958 3481.2943 169830959 APS_AprB Sulfur adenylylsulfate reductase NA Candidatus Desulforudis audaxviator MP104C superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Candidatus Desulforudis;species:Candidatus Desulforudis audaxviator; 34821.909 7023.1044 3350.6319 409194136 xylm Organic Remediation Aromatics BTEX and related aromatics Ralstonia insidiosa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9307.6152 4748.9971 189198385 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 44154.4875 19118.8987 1880.4702 4761.5328 2515.8272 5034.3314 6862.0709 392170.5185 4627.2838 36252.5418 6440.7128 5570.2694 5570.2694 77654.0591 8351.5872 6111.4903 2883.2708 3086.2431 7165.4956 3522.0445 9901.1983 5143.7873 8587.5739 6406.8609 3828.6882 43256.532 3624.5174 23494737 pcpe Organic Remediation Herbicides related compound NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 414288.915 6863.6693 7507.6059 7610.2093 3319.7673 4247.8746 15741.068 118155.3233 3760.1112 5343.8203 13227.2923 8191.1498 8191.1498 9222.8901 4105.7961 3072.3017 4575.9192 16379.5177 5425.3546 5192.3586 3304.0934 2896.182 3602.9686 4308.3598 384105110 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 6302.4966 20020.029 54778257 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8973.8825 8467.9692 10847.9126 2557.7225 4588.1461 29087.6991 6076.7742 14189.7752 7082.9893 6092.1395 1818.9112 3302.658 5957.1209 3818.0998 260862024 ppx Phosphorus Polyphosphate degradation NA Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 6829.3987 8676.858 4309.4 6920.9905 4005.8203 11250.4886 4432.1752 32551.5362 4244.7996 11847.9516 49531722 gdh Nitrogen Ammonification NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 16439.4244 46307958 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10987.9318 2809.9232 2771.2062 5273.5477 4326.307 4217.1763 3909.8823 5278.9128 3240.5388 9566.152 3813.507 2195.8425 3917.6223 5514.4021 94425287 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 54762.1338 4889.5441 58221589 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6721.4372 33689.7496 2159.8921 2159.8921 4566.7797 5749.5261 3894.816 4825.4942 3958.1247 10272.9352 3346.5108 238499127 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6949.0296 338757689 cellobiase Carbon Cycling Carbon degradation Cellulose Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 183668.2149 36507.294 5933.89325 37709.4122 22638.9077 1794260.2685 42358.3782 29849.5971 184793.0061 28777.2299 23001.7834 45382.6131 86154.0518 160632.8638 196482332 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 26331.5196 4694.4652 68055722 pula Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 4534.7146 3650.6197 3849.2872 3569.4973 85774.243 45554.423 6879.0538 2357.2916 2357.2916 8816.8179 3218.9718 3348.9987 383336743 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 9193.1183 28818.9504 3506.6091 3707.6832 58702.8956 6031.4495 5403.9908 9729.345 1955.1223 359686237 ppx Phosphorus Polyphosphate degradation NA Leptospira santarosai str. 2000030832 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 6928.1666 3179.2466 8789.8353 2510.9952 4523.1626 2596.9887 3829.3576 41901.3601 4508.4922 5399.8497 5416.6447 7881.6042 3899.0876 2989.8545 3120.3481 4714.9235 335878489 phytase Phosphorus Phytic acid hydrolysis NA Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 5008.844 334698678 pula Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans BR-AD22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 6533.9302 334858984 cbea Organic Remediation Aromatics Chlorinated aromatics Frankia symbiont of Datisca glomerata superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 29202.2983 26009.7723 18504.55805 20210.90335 23163.1271 20963.7891 19015.30685 33376.4365 9619.5018 10646.1436 88801015 tktA Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 4728.5663 4377.2587 19121.1489 4398.2364 5075.6177 4164.6484 38342.1479 8265.8911 6484.0284 111036262 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15877.7654 13615.8818 51605.2451 5729.4948 5859.1588 221724.6371 11594.44345 18766.1197 13290.2612 11160.30745 16924.8807 16010.3253 6630.0923 12034.83045 10655.75525 388609650 nitro Organic Remediation Others NA Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 34225.1789 302695891 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7502.1263 15196.4945 10199.1436 2497.948 3525.3863 3105.4687 3063.6034 8330.6102 4147.609 3598.4903 1877.9641 3589.3911 110283816 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 5852.5664 2554.1757 14657.2865 2349.431 4723.703 16844.6004 154159943 PRK Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8031.5549 5201.715 16654.2725 4664.1513 2641.4658 4074.6997 4776.6466 5191.3112 112396.6818 4280.4216 6995.3959 5722.0466 5722.0466 3584.5711 5827.0262 3720.9492 6731.8398 4785.9627 2764.5248 2625.9679 5909.1125 2229.9917 14168.4396 4920.3897 5634.0913 1849.7589 2892.539 3238.9306 2740.441 85824319 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 24510.6562 2805.9666 4808.8103 3423.9584 13637.6426 2740.9643 5797.2024 4952.2204 16330.6137 3180.7577 3180.7577 8021.1733 8350.5218 4798.357 6501.431 84866.866 5594.6635 3206.3094 9724.7697 2757.2673 13975.0399 5047.7854 6238.7956 2871.2898 2324.9838 5599.9905 164455906 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11114.3348 20346.9893 4211.5485 3531.2462 2020.7277 2020.7277 14572.5998 116106193 ppx Phosphorus Polyphosphate degradation NA Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 18817.3591 3778.196 17643.5831 5278.0787 1788.4727 2541.0453 7298.5276 310796155 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 8746.8961 16627.2387 5161.1342 160003.7966 5972.1442 4459.3223 2196.8212 148254105 rubisco Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6203.1925 3715.8664 5830.6109 5830.6109 4429.1665 7882.793 6335.808 9352.8213 5806.6398 2778.4917 88813667 cysJ Sulfur Reduction NA Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 23698.5316 359354792 PRI Carbon Cycling Carbon fixation Calvin cycle Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 5750.8774 75992416 phta Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 14580.4385 3791.1789 4463.7897 37313.0543 4945.7103 5963.421 4532.9729 2336.2126 3567.4298 2600.0253 335945804 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_30 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 14506.7007 4575.1928 2856.3545 2856.3545 3929.9726 5242.9889 8827.4458 4767.4366 3305.4656 12685.6327 1177721 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. M5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 29144.5638 8877.105 4716.1 2634.7597 2634.7597 7060.1241 2705.1848 373251403 amyA Carbon Cycling Carbon degradation Starch Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 31539.8142 3444.482 14524.4852 4996.3014 3695.4487 5997.4381 5997.4381 3059.9641 7964.0063 6357.7934 12944.5415 3435.6283 5060.0123 8298.8076 3136.8033 5927.604 270290514 cellobiase Carbon Cycling Carbon degradation Cellulose Pediococcus acidilactici 7_4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 6019.301 5775.1382 6040.2421 93569.9009 11122.5859 7978.9106 5191.5045 6040.5142 11077.6071 13658.2667 3718.0419 163800528 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6017.5607 27376476 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4922.5989 3635.7156 12507.7164 4795.8337 4795.8337 5860.635 131248.5683 4154.0605 6744.6154 23199.0404 2442.455 2866.7785 373957890 ara Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 7760.0053 332684488 cda Carbon Cycling Carbon degradation Starch Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 54325.1822 8047.4184 121589518 fccab Sulfur Sulfide Oxidation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 5390.2449 8519.303 16321.3534 4100.9401 3019.4244 2093.6262 5959.8322 3576.063 4737.0323 66469.1289 8754.2478 4229.0491 69459.2682 4535.0935 4535.0935 4225.3222 10310.6578 7035.5246 5357.6724 5180.9031 7107.3192 3880.8549 3227.0521 9925.1803 2602.3657 18398.6058 4471.8741 7229.2186 4175.5162 4829.1776 4501.6036 2499.3072 8464.7873 149812604 phn Organic Remediation Herbicides related compound NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8523.6403 5211.9394 24865.4866 14292.9422 2544.0711 6619.8744 11014.6844 6378.3394 9592.7867 179959.9639 9745.0864 8899.0529 33454.3689 8752.3355 8752.3355 4495.0432 15465.2642 10538.5366 8573.2909 2121.9631 5173.1818 19799.9987 8848.0091 18201.6603 17375.9826 13131.0812 7897.9462 6053.1565 2969.5734 4429.8196 256685013 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 4821.9445 4975.45 4703.139 2543.6014 2546.7093 17113.2205 3282.99 72474.2536 6344.5256 3801.9542 2365.5297 2365.5297 3081.6867 3814.2925 5023.0739 2766.1939 6693.6331 2064.6456 6601.1375 2585.4235 3476.4891 3310.7966 2710.1103 7049.5551 118424334 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6510.3295 422314209 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7395.8058 2931.1126 394910.8335 3588.4653 3588.4653 129279098 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 36115.9631 34813.3833 4887.9218 2187.5462 5383.5397 2490.8115 116668824 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 16103.8138 7185.2209 13520.2803 11527.8623 3387.0512 9001.0837 5576.5221 70484.5012 6147.8861 3193.4565 3193.4565 20162.6641 3322.1317 2894.7781 2622.5191 8137.5905 7268.6818 4620.4781 11421.6362 3302.8887 2492.7866 218166276 mer Metal Homeostasis Mercury Detoxification Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 165284.3804 6045.5762 61106433 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12170.8439 4832.4507 6203.8946 3588.5051 6639.2577 4679.5668 8809.4225 2471.3915 5276.5055 11858.6009 2770.7587 391358256 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermoleovorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 13060.6551 5790.8403 16095.8998 7442.1168 8943.5907 2451.6428 2451.6428 2987.0776 47149.838 21760.3133 5047.6921 3071.2036 3124.9356 64954.6012 108764331 nitrilase Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 6705.7361 209521285 rubisco Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 14798.6374 3270.7673 3747.4976 4132.0972 3601.8439 5585.7521 26387.0174 7103.0241 4164.2006 10576.5385 169793548 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5517.9599 5738.5281 40482.6619 3296.6331 3296.6331 17354.376 2874.8342 50235.9345 4158.7173 1637.2996 157804772 aps_apra Sulfur adenylylsulfate reductase NA Thiodictyon sp. f4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiodictyon; 12370.4281 3895.824 169826865 terc Metal Homeostasis Tellurium Detoxification Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 8931.8288 3029.7833 3263.6294 58889.4433 3709.6087 1900.9011 1900.9011 3866.0439 7765.1055 3712.2597 6192.6628 4520.4619 1998.5828 2754.6863 7072.3967 9795.324 5010.6278 6700.6568 3000.1379 3140.1342 3886.678 2565.4879 5937.6801 89349520 urec Nitrogen Ammonification NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 12369.9133 2441.3309 4946.9076 2741.9257 2741.9257 6289.1956 4047.8302 5022.0903 3880.2916 5752.3535 6590.6833 2425.5831 4133.8572 5211.0968 6979.2591 220931089 amyA Carbon Cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 5460.7441 5646.2302 5001.0206 8142.8983 4791.4979 3606.3183 114847.3791 117221.7196 3543.8331 7712.1589 2651.1469 2651.1469 4245.8953 8209.5748 7841.8217 6884.1039 23026.4453 4597.8578 2510.3672 7918.8203 18480.7746 7034.382 46326.5242 10771.3879 13733.6631 9962.8165 5137.7077 17965.4716 2178.0295 319653823 B_lactamase_A Virulence Antibiotic resistance Degradation Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7896.0872 4082.3708 2198.7774 2198.7774 319930504 cysI Sulfur Other NA Vibrio vulnificus MO6-24/O superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4408.1871 5591.5917 4273.7842 13699.8538 11984.1297 2643.9298 106801.2339 4628.3214 4550.0816 7199.0576 12632.7668 127622.2807 10042.5648 36488.8941 1208969.0948 4631.2303 5531.0023 2498.2499 218569.2683 3720.5943 4700.2629 300724698 nirb Nitrogen Assimilatory N reduction NA Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 273416.0749 2795.2589 2950.969 2023.8889 3405.7086 3611.2573 5546.3676 2610.0959 6353.0198 4111.1425 5783.3548 2200.1517 5679.7592 2375.3883 4370.7136 10969.1651 2248.9542 3107.7864 2277.4008 124258969 vana Carbon Cycling Carbon degradation Vanillin/Lignin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8708.2336 9993.4603 5381.3196 4746.0597 65721.4368 144284.1525 2243.9929 2243.9929 2739.9152 8565.7174 4307.4924 4134.0536 13629.37 10008.7686 2901.5876 5830.2989 3624.336 12635.9901 4492.4414 5628.3126 2260.6751 3203.8971 20915.1314 2435.5215 18651.7479 386403140 hzsa Nitrogen Anammox NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 5125.2699 3773.0585 13602.5214 214045522 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4927.6544 4874.6788 22990.7237 7071.874 8233.8008 3189.3215 45582.0879 11840.5847 4628.9004 35260.7973 35260.7973 24968.6856 3155.4773 2501.4443 5362.4277 2956.5223 13095.5699 3702.2712 6304.3953 2874.9805 7177.4669 4620.4617 2844.0593 157961968 bphd Organic Remediation Aromatics Polycyclic aromatics Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 714807.7918 2296.4151 4405.0439 119357397 b_lactamase Virulence Antibiotic resistance Degradation Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 11707.9762 33385621 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 776599.3509 215272.9882 18465.0299 241949401 phospholipase_B_fungi virulence degradation NA Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 78459.4957 2855.9594 61123.7899 8448.7994 4287.0196 4287.0196 7048.3264 386429335 soxY Sulfur Sulfur Oxidation NA Beggiatoa alba B18LD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa;species:Beggiatoa alba; 79870.8143 294475187 ppk Phosphorus Polyphosphate synthesis NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 24322.5901 2678.4025 3653.9413 3326.5796 2601.327 12435.6756 4144.5358 1806.6189 2663.1477 3540.7672 365872374 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 10907.4554 6207.3339 7161.3979 4048.6151 3568.495 4435.2711 3703.7556 58622.4453 4148.0042 6942.3396 2676.1043 2676.1043 5736.9883 3644.0581 6215.2133 8427.8404 3648.4393 4949.012 32306887 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 44117.516 79483.731 2326.1097 2252.0633 46307846 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4835.946 6471.5158 5492.7201 3438.2978 7106.696 7128.9883 4225.1272 3942.9494 98780.0554 6019.79 3243.7592 4915.2137 5969.6643 5969.6643 3253.7281 19031.8572 13477.9013 3681.4045 2645.1222 4837.9915 18090.729 3878.8772 27498.69 8284.1044 25200.0928 2699.2451 4949.519 6041.5834 3502.1234 4512.5752 340616539 amyA Carbon Cycling Carbon degradation Starch Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 944123.6228 182621.5376 16232.8497 2544.795 60597.6872 3887.0438 77378657 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8804.1873 8038.5729 164456120 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 47430.1617 5325.4479 4195.486 6046.0121 3750.0343 37288.447 15549.3336 3641.8278 3641.8278 7480.2045 8231.0626 7406.8631 40113.4966 2731.5372 42893.7759 5639.2941 6462.3389 2668.2952 3757.7352 2958.1615 8288.5787 110341100 amyA Carbon Cycling Carbon degradation Starch Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 13241.3571 11356.5599 2430.6121 5620.1694 30613.6486 6062.9774 3665.0085 9262.2396 8208.0981 2466.056 84778357 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5146.904 2489.1434 116634747 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5655.2217 3603.7338 3573.1261 2744.3772 2744.3772 3198.1153 88182912 badh Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 6720.4615 260937676 cmua Organic Remediation Chlorinated solvents NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 218010.3713 4332.9424 5386.4393 406718185 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 10012.5239 2739.895 107015191 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7431.1183 4398.6428 7017.7187 2112.8555 3703.7492 5234.6361 3699.4932 2787.64 4225.9492 8037.1762 4829.5085 7511.1132 6055.2947 4913.9553 3166.1491 3023.6321 2153.7133 5482.459 227500400 ppk Phosphorus Polyphosphate synthesis NA Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 6341.7234 30785.3724 24885.4306 283481911 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 21840.8862 3550.2308 2563.3632 61306.3113 6864.4908 3614.2511 4412.1637 2138.9541 5859.4208 1948.7879 7101.2991 3469.1908 4831.6145 2145.2489 2775.9682 15734.7773 2292.3229 85859696 atza Organic Remediation Herbicides related compound NA Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 58747.6383 8277.2962 6575.581 3435.7196 7191.9821 4713.9488 31322226 nitrate_reductase Nitrogen N Assimilation NA Verticillium fungicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Verticillium; 288764.2548 5946.1162 2291.5361 4808.2807 3408.3719 70523.1579 2413.167 2413.167 3138.3108 9811.8801 6776.143 4731.7702 2436.2127 2652.5955 5230.8669 5911.9812 3839.2375 9307.4487 3831.5191 4569.2361 339728642 dehh109 Organic Remediation Chlorinated solvents NA Haloquadratum walsbyi C23 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 35939.1735 2073.7733 2073.7733 171277954 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 32741.5823 3667.3515 2869.8955 4471.5445 3011.9939 4407.1074 328677056 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14738.1101 37726807 dsra Sulfur sulfite reduction NA uncultured prokaryote 8565.705 5871.2701 3238.049 6245.7955 4648.4678 2144.5166 2144.5166 16021.3786 4329.2914 10624.0591 3862.5421 3538.3407 9357.5035 37666.5461 3496.7608 399909747 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 1184128.4689 378404636 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 711217.0271 30334.3919 5772.1214 32617.9941 3666.9671 4331.7392 3062.7191 3062.7191 3297.7061 5399.8406 1787.9698 4175.2404 206678169 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 48776.9623 30761.2667 8919.5348 240868534 phtb Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 121571.3455 13240.8483 2864.933 326800056 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 6253.2207 2093.9121 2228.5602 3759.8534 4805.564 2520.0102 2181.0325 214037970 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 15330.8187 5489.0093 12751.6107 2855.993 2342.5505 5457.4665 59454.6189 8479.0705 5149.4193 4733.5389 3087.0823 3087.0823 9826.2676 6353.1761 8495.3231 6833.0907 2844.3551 2426.9867 9173.2897 3936.8012 6668.5172 1804.1811 3957.5217 3493.9646 327544888 FBPase Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 148410.7674 2507.7115 7114.3092 3043.5412 3625.3522 3228.3516 3517.1669 3517.1669 6557.9853 6893.155 2802.6672 7555.5692 2120.1382 9087.4567 2665.7673 2094.4049 18405.1334 110627663 mannanase Carbon Cycling Carbon degradation Hemicellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 43101.6642 21320.4364 2838.4642 2293.7901 3195.6008 4286.7034 5530.4714 5003.4154 5003.4154 3257.5204 7038.6995 10789.1267 3718.1414 3470.7425 6438.6534 3450.0075 13097.2745 13594.5292 18916.6205 2879.3936 4626.1308 3920.5365 256395590 badh Organic Remediation Aromatics Other aromatics Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 6281.6452 2346.4761 109989.622 3414.2647 8105.0786 4586.5577 63252967 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 88467.3368 258587699 chitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 29623.4763 13835.8391 288316660 pme Carbon Cycling Carbon degradation Pectin Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5375.7625 3871.7945 19710.3051 20161.8184 2900.1009 3865.1725 2667.1918 77523.3966 4387.0589 3798.6947 17315.6294 6162.467 6162.467 12672.541 4892.674 3898.5193 18221.6626 8926.7049 9032.9742 4286.8047 3681.915 113526567 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 11176.6197 17319.8347 2557.6048 3023.4287 5185.121 4098.4964 6743.8476 12221.3955 5421.9072 6479.6708 13917.7463 6426.3168 2462.0565 5000.2193 3836.4312 2808.3226 254485638 phn Organic Remediation Herbicides related compound NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 17070.2358 6885.5826 2290.77 242818615 Sir Sulfur sulfite reduction NA Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7614.2211 4407.9542 6227.0214 6227.0214 83940.2803 5186.4543 2493.3684 302409720 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 97010.7454 6857.1204 6976.6696 9477.308 66852912 chnb Organic Remediation Other Hydrocarbons NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 4882.3839 6799.8664 189193473 exoglucanase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7269.0761 9212.1485 4650.9704 3075.1781 6958.7528 3277.2464 3277.2464 5797.41 3004.1737 3446.2735 3425.5509 109455651 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 6247.4919 2357.9113 2357.9113 8147.7687 5492.6358 154279762 amyA Carbon Cycling Carbon degradation Starch Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 16299.8545 2862.8686 3202.9061 2925.0879 15884.9864 26264.3096 3725.6132 3725.6132 21859.8825 26401.0569 3471.7904 23405.6211 3798.9898 2425.975 3371.5432 5908.0583 3639.794 8179.9206 9148.8001 8223.1817 2436.7278 2989.1725 5310.9993 2711.2869 6301.0112 340774778 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 24996.7503 3983.9895 3983.9895 6043.4974 218171083 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 45345.5556 23248.9521 9055.2602 5084.8415 4974.7841 8001.7853 10801.9326 124055.7588 5921.6261 31367.4875 12155.0049 14559.6138 14559.6138 6071.0616 18721.4651 8366.07 3732.8337 7832.9866 12469.8245 11082.2008 10430.3669 13788.978 6268.7169 29110.4364 13211.7993 12725.4517 4316.0714 6717.0904 102998.9656 3002.828 365791935 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 6410.6919 25229.5119 25229.5119 8247.1008 2038.684 3013.9141 330723201 dsrB Sulfur sulfite reduction NA Desulfovibrio sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 12190.3819 24017.7023 2241.5212 3491.8314 19824.9917 5705.8042 97281.1165 5969.5565 5402.7888 9878.0706 2955.3123 2955.3123 33980.6008 5147.307 8736.5279 17599.3436 4249.7713 7365.3047 2924.6707 6383.9153 34412.8671 8367.6 6779.8146 6667.6333 2793.6695 5182.1071 3600.5127 2209.3267 5367.8937 307743700 pcag Organic Remediation Aromatics Other aromatics Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 7178.3128 2491.6214 2964.0774 3092.9928 72405.7465 3890.8473 2092.5277 2092.5277 7472.9646 16361.9614 2330.9109 2647.1381 2904.9423 10728.7471 4705.2841 8380.7381 1811.5827 4260.3562 4355.1854 8554.858 229611240 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22942.2402 11367.4955 10083.4158 1970.5097 6413.8901 9349.5968 5446.6076 127359.5829 9912.9888 10831.9688 9697.5852 3832.8419 3832.8419 3955.1438 33724.1306 7282.8134 4150.2165 6178.6443 5660.5562 8556.3471 15219.4438 12785.2606 7769.7109 15516.2198 8662.7039 10970.1401 2986.4523 10131.5915 8203.6068 5877.743 227420838 aps_apra Sulfur adenylylsulfate reductase NA Desulfohalobium retbaense DSM 5692 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium;species:Desulfohalobium retbaense; 43581.8624 29608913 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 14103.073 2234.8302 6769.1931 6769.1931 6210.4666 2228.8501 4326.7829 2088.7654 2699.3254 19140.4198 2435.4957 300545277 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 15759.8101 4213.7367 161339353 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 131874.2125 5905.3728 4062.3604 169758948 arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 500155.6781 77463858 nifh Nitrogen Nitrogen fixation NA Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 32362.6795 39059.7872 1826.2454 2190.3156 2472.7301 8533.846 8159.745 6360.0882 3335.4748 2819.8488 3280.6344 399909705 poba Organic Remediation Aromatics Aromatic carboxylic acid Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 166801.4894 9284.1707 6817.4234 4784.6677 2689.8827 2689.8827 8169.4035 17121.8379 8634.5538 28416421 phenol_oxidase Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 17344.0297 4493.8247 4340.5925 6049.4984 9073.2501 24228.313 2653.7036 3654.4922 8619.4546 157679419 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15985.4209 307725879 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 29686.4294 23273.1472 4980.8889 89455.2673 11129.1383 8341.4269 8341.4269 3852.8303 4217.9212 3642.5961 20740.1438 16903.1352 10073.4273 22212.2125 8136.8917 4898.5245 5533.2997 152610 nifh Nitrogen Nitrogen fixation NA Rhodospirillum rubrum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum; 205538.5387 5108.5709 7827.0611 302423334 mnp Carbon Cycling Carbon degradation Lignin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 10011.289 114298.5614 14136.1626 75926.8774 5810.896 5567.7459 7095.1662 3367.09395 3367.09395 10040.0859 2446.871 3469.8595 6993.3798 10438.4633 3942.5564 5516.4225 58701872 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16826.4067 241207.7023 55845897 B_lactamase_A Virulence Antibiotic resistance Degradation Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 80586.8011 2774.6971 5226.7734 3937.6781 163893.6457 7682.4791 4065.5065 5863.8898 7157.0676 13741.8483 2060.8303 4686.6483 9685.6285 7979.8287 5173.6406 3275.3687 4623.9082 4994.14 6461.5676 91223445 chitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 11662.01485 4313.8559 214031349 nhh Organic Remediation Aromatics Nitoaromatics Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 20622.9355 69362.6763 3615.4245 28372.1464 3925.2725 9522.1447 4766.0684 8738.3863 5439.1496 7624.3326 5235.373 6925.2657 8339.0519 2476.1137 2282.6652 11259.3768 8827.3391 120274.1141 2972.7039 100515.2758 288920911 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11300.8945 5525.7478 4725.0185 6343.1502 10717.4476 10900.5876 201759.85735 11068.7282 19224.7557 10868.3182 10199.92565 8449.6168 6169.71495 11463.82345 6804.53125 16107.92765 5535.2114 11497.0537 5697.83205 11658.2616 146399405 nifh Nitrogen Nitrogen fixation NA Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 20497.0863 5972.3449 374335097 arsc Metal Homeostasis Arsenic Detoxification Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 11701.0629 3800.8347 94471145 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11475.7901 10207.0095 4093.2997 2323.2693 3192.9218 7050.2003 8117.458 145846.8117 4472.5367 4855.3659 19157.3747 6553.4034 6553.4034 3651.6644 11610.0749 3851.1339 8273.6128 38537.8676 5637.2031 3901.9047 7375.3501 3895.7931 9243.5004 18050.7296 8521.9057 5966.9142 55499.2675 9231.3545 5486.6048 6223.0338 335339944 dehh109 Organic Remediation Chlorinated solvents NA Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 8553.6083 5051.5518 300103210 glucoamylase Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7487.9042 213013099 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15676.2797 4317.8146 60055.7599 3347.8577 6276.6344 4197.2868 3463.7034 5029.2616 4659.479 2117.8274 2103.1598 3296.2372 2947.1332 284448004 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 17845.5092 4403.5531 328452141 arsc Metal Homeostasis Arsenic Detoxification Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 113435.8507 4862.2669 25255.587 5413.0542 2461.0612 3266.1474 2244.3989 2244.3989 5544.6444 11596.2523 211588186 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7978.5741 349686767 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 5387.9225 5770.3205 3988.0008 4629.7531 4198.8756 4198.8756 4210.8815 7792.8664 4349.4794 7377.3845 79297.4988 4301.7677 12903.8625 6591.3975 5141.1649 4327.8329 3452.2008 3227.9694 6698.3105 365424374 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8103.0843 119355882 fccab Sulfur Sulfide Oxidation NA Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 11227.6012 13320.8482 2998.2054 6244.6914 139003534 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 24953.0758 3403.3655 6150.8675 6150.8675 3008.4583 346056334 pchcf Organic Remediation Aromatics BTEX and related aromatics Pseudomonas aeruginosa NCMG1179 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 13918.9631 4250.5413 2778.6909 119896723 cysI Sulfur Other NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 7320.5126 308741157 amyA Carbon Cycling Carbon degradation Starch Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 9589.6494 184196298 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 13100.302 80416.4505 26487.5784 5624.596 11340.6845 2204.3219 381378370 FBPase Carbon Cycling Carbon fixation Calvin cycle Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 8679.5964 2325.4963 15560.0333 6079.1115 8015.0403 3850.4557 3850.4557 6648.6233 4165.6231 5088.0155 3240.7773 3351.6609 5057.53 12517.2658 375057901 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 49213.959 5020.901 2708.769 4514.8312 4932.788 78093554 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6086.448 5374.2803 4802.4878 2038.8469 4461.0269 3631.6555 2444.1932 59652.7274 6950.4182 5384.179 2856.7066 2856.7066 2914.9223 5252.4331 147252.326 8735.1193 7029.7679 6957.1955 2786.6819 3605.6543 85713.8251 115436968 badh Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5002.1006 6411.4657 2010.6815 254442050 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 5252.3104 2723.0648 2929.1732 2292.954 4392.5957 5306.2597 4614.0384 55225.4211 4150.5229 2164.7242 2164.7242 3177.0934 7758.9253 8421.7711 5373.8335 3183.1517 4503.3109 5405.5028 2643.772 12268.494 4486.8124 6289.9872 2913.8607 4321.7683 4448.3947 2246.7216 6690.9344 375309789 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5598.0142 14987.432 14447.0509 2730.5547 3325.053 8627.165 81069.0679 5137.1786 8453.5256 9987.1327 4407.1742 4407.1742 9458.1923 5458.7743 4049.5697 10322.4043 2691.8514 10737.7527 9350.3599 6876.0925 3027.1338 6655.8536 3308.7823 4615.24 375057805 arsc Metal Homeostasis Arsenic Detoxification Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 97062.8669 103455.4703 6139.1583 2095.08 6503.3424 4722.4023 74090.8517 3841.2933 2626.079 2626.079 20630.7713 10499.2677 3729.4863 2862.6792 2804.4185 8909.2894 2114.2285 10917.0407 4361.7788 7952.5821 2211.3079 3064.2376 3363.5593 83972348 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5885.0556 5418.9681 2816.9195 4188.4134 9520.9684 9814.6541 5024.4001 7170.1511 2522.9535 2305.2384 336302484 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4850.7638 5841.3753 12471.3326 4281.4915 4191.3521 3840.313 1400089.4325 4536.5132 4724.3489 25664.2318 25664.2318 5065.3389 7901.3674 5098.1488 27517.3237 9717.2175 10598.7548 3863.8786 7879.0849 9407.0408 6957.1818 11670.4824 5546.1394 4519.6442 113373.6733 12939.0536 2863.1432 9320.312 352124089 arra Metal Homeostasis Arsenic Detoxification Natronobacterium gregoryi SP2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronobacterium;species:Natronobacterium gregoryi; 10587.5523 2461.9323 2867.9188 5326.9253 119128.2374 4639.1799 4878.1745 4313.1582 8524.4773 5939.8549 7706.4324 8096.9284 3745.4701 11030.7612 3464.7399 10064.2378 9280.3588 8769.3373 3685.8158 3496.3663 8076.659 2932.139 145283209 dsrB Sulfur sulfite reduction NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 5304.9508 5277.2475 3673.2608 388057921 xyla Carbon Cycling Carbon degradation Hemicellulose Gardnerella vaginalis 55152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 257538.0781 56315209 ppx Phosphorus Polyphosphate degradation NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 29662.7501 4891.3341 367474619 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6884.5506 27780.1703 2163.9817 5277.1816 9524.1184 3617.973 6195.5515 3467.0069 3163.6631 9851.632 4656.0374 7305.4425 5797.6609 5807.1931 310795353 glucoamylase Carbon Cycling Carbon degradation Starch Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 23353.2892 6898.1792 5401.9359 486516.6822 8688.7243 8997.4732 338210055 poba Organic Remediation Aromatics Aromatic carboxylic acid Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 4870.8403 2673.0289 3956.7922 12544.8473 3417.794 3090.168 64875.041 4109.7806 2643.3898 12932.258 5458.5933 4156.6351 5175.1558 3768.3447 2817.0646 18660.7449 2457.221 23149.4396 24418.094 2832.8314 3541.2807 4654.256 2217.3054 26621.4557 290559576 mer Metal Homeostasis Mercury Detoxification Candidatus Parvarchaeum acidophilus ARMAN-5 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Parvarchaeum;species:Candidatus Parvarchaeum acidophilus; 6303.2683 209307.5092 2456.0075 3506.8402 8538.3329 13199.3285 60507.0474 12401.7762 9006.5097 3468.5206 3468.5206 9951.482 10953.5159 5751.7335 6502.0708 8286.5035 5615.4161 8171.3095 2485.0367 6819.2648 8171.6362 11152.0306 5695.0118 7351.7745 1985.6224 5551.2732 5411.4568 9912.454 7172.0616 116013374 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7169.4818 86176.3818 302386205 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 13117.7296 2447.3495 5189.7706 1932.6596 1932.6596 6405.5499 2774.4718 8791.8838 5079.6626 2693.194 3802.9236 2236.3864 5783.0969 93006081 linb Organic Remediation Pesticides related compound NA Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 6724.5045 10611.8907 3813.3067 4893.3968 2181.9343 9392.6848 5885.8525 11296.0047 88547.4875 10958.6795 6303.4261 5133.4355 14628.7947 14628.7947 4642.6272 19449.5206 7425.4955 6658.6179 5389.9174 12163.2876 8283.3338 3434.4768 7352.1394 5249.1911 12945.4977 6854.2036 10489.1272 7606.8099 4916.9187 10123.4012 7001.659 4822.9194 353682250 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7515.902 16786.5275 6354.4722 13956.1555 3192.5112 6180.2262 6821.6885 6988.3784 89295.9614 7173.8077 7142.6976 7842.6836 7842.6836 8585.1024 6212.1976 5217.0629 6699.9421 14165.6232 3043.7692 4608.3591 8543.0433 3799.8938 13716.7147 6668.0319 8029.7407 3939.8565 6687.3408 5738.7447 4903.1 8463.7204 115525282 ppx Phosphorus Polyphosphate degradation NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 17164.4992 2674.3624 2162.025 4912.0755 6765.5489 2661.5964 3808.7175 2718.061 2718.061 3826.7425 9758.6126 5691.2815 6453.2557 4513.1075 2400.9147 3123.6897 22958.7717 18798.9436 8611.9839 3954.5663 5681.4545 5062.4313 6026.5558 4071.4914 2309.0583 86555017 nifh Nitrogen Nitrogen fixation NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 99157.4188 6733.8238 3334.105 8270.7304 349796416 ppx Phosphorus Polyphosphate degradation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 6251.5618 10454.9194 81696.307 6444.7746 3318.2475 5223.3514 8751.2331 3797.3276 7222.2236 4742.3654 6320.6501 4147.0744 119494976 cellobiase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5049.9539 3732.9715 2316.343 6057.034 1904.3738 15607.8465 4239.4461 117647806 cellobiase Carbon Cycling Carbon degradation Cellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 4875.9422 62699.0672 4522.8502 6943.3943 5609.5804 4771.7054 6909.1929 15707.5535 7329.7437 2541.4016 3470.9198 2015.5951 5992.9574 52355303 silaffin Metal Homeostasis Silicon Biosynthesis Thalassiosira pseudonana superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira; 9156.7095 4775.8092 7453.3528 3403.7331 4814.9 4306.9199 19716.3332 55230011 nosz Nitrogen Denitrification NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 6414.8874 4067.0551 2419.8757 81134.3335 6669.2926 6352.5299 6370.9466 6370.9466 7679.9269 3992.4556 3488.9097 6653.6744 2599.2118 9086.9975 6913.6525 2565.8201 9269.1179 342817763 arsc Metal Homeostasis Arsenic Detoxification Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 21482.6218 3213.36 3302.0369 5128.4923 4615.0315 2989.9082 164455616 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 40817.6858 47277.5299 14988.7651 3552.98 68004.36 5399.9443 4968.4146 6652.1336 5610.2912 5610.2912 5896.7715 3559.1471 3750.2984 3327.1905 6099.9951 9357.8423 7809.0603 13985.9834 7275.5694 6398.0341 296132159 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 21376.4529 3587.1452 197296840 b_lactamase Virulence Antibiotic resistance Degradation uncultured bacterium BLR10 superkingdom:Bacteria; 13708.8948 3775.2647 4780.7213 73763010 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 221697.4891 9472.8169 2777.0045 3997.451 3444.7449 6345.3291 2203.9061 9662.9109 2627.17 3652.9391 2197.9677 351594015 arsc Metal Homeostasis Arsenic Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 11389.454 73653.3736 3503.0537 3829.5716 60031.8532 4506.8599 3664.5435 3664.5435 10406.5753 4682.2875 2918.3187 296846322 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 6630.3862 4534.512 15626.7206 9903.6099 2394.6443 4048.731 74728.8021 3624.0358 8661.1662 4931.8059 4931.8059 3556.0815 6378.1403 43486.8646 3985.7676 4971.7987 5414.639 217415130 atza Organic Remediation Herbicides related compound NA Bifidobacterium angulatum DSM 20098 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 7168.1851 3293.8123 5699.9155 6398.7971 8936.7573 5535.0731 6255.0668 261404319 vgb Virulence Antibiotic resistance Degradation Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7279.0651 3913.7486 8589.2705 10425.6418 5489.6245 2624.5746 3579.4457 4782.1632 26278688 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6624.6411 134293013 ophc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia vietnamiensis; 46274.2933 7918.9987 126305.459 4649.2299 3359.3147 9164.2755 875376.2628 23582.6874 8853.1724 8803.5013 5180.7721 34605.5442 2409.2791 10929.5665 6131.7453 5927.6549 5026.1991 3014.3479 3258.0286 2559.0777 4783.7505 299746989 pec_Cdeg Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 12453.6105 6196.7656 13817.7315 307631971 arra Metal Homeostasis Arsenic Detoxification Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 7498.1731 2274.6153 3633.4985 3933.8688 4645.3466 118424364 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14817.76 148868351 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 12411.2847 365274512 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6416.7369 4657.8944 11089.8983 4759.4067 4347.9664 3567.8431 4915.2603 2749.9728 93445.7198 4688.4953 7871.351 8615.061 4968.4634 4968.4634 3910.4092 11131.5204 5045.1508 5898.962 5213.8213 3579.8809 4441.4998 9126.8072 6073.587 14929.0085 27240.5721 9367.029 2496.7195 5584.1715 3843.299 4648.7696 5793.2258 227327772 cysJ Sulfur Reduction NA Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 22345.625 2155.8664 48443.3565 3028.0986 114642.6827 3077.3692 12511.3241 1836.95 3805970 napa Nitrogen Dissimilatory N reduction NA Rhodopseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas; 7780.5617 3890.2485 16651.2612 12714.2858 68553.7353 6124.0938 55736.8726 6477.9924 7987.6786 4139.1302 2637.0275 2637.0275 9709.0876 7748.5847 5022.6565 4769.5238 5284.6882 8685.4941 3515.785 9905.491 2053.0322 10281.6584 8055.8198 7382.0515 2513.4917 2970.4981 9038.4305 2980.1911 6424.0672 339608694 rgl Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 24734.5312 4619.6868 5730.0225 7357.7991 8467.1773 2528.0948 9863.8788 1988.345 1988.345 51213.5808 6193.4641 7211.3176 5094.3002 4241.7642 4089.1176 154246440 nira Nitrogen Assimilatory N reduction NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10010.8842 7442.2204 3163.6687 11712.7007 6901.2238 2467.6947 2467.6947 2133.9129 2560.2643 3648.8618 6250.0038 2985.9969 359736518 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 7384.3438 3418.7261 5724.9347 4094.5522 12091.6062 2176.5153 7886.7711 2288.3107 3600.844 2477.3302 8347777 endochitinase Carbon Cycling Carbon degradation Chitin Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 47127.573 376372746 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11554.7788 7857.1276 28153.664 103978.9698 3809.1105 3007.9852 2170.1033 148361511 protease_serine_fungi Carbon Cycling Carbon degradation protein Cladosporium cladosporioides superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Davidiellaceae;genus:Cladosporium; 11800.9976 5071.1996 3688.9617 21072.5002 2616.919 136008.9328 2495.6584 4751.1331 145576279 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 37147.613 10746.5306 110286617 xylc Organic Remediation Aromatics BTEX and related aromatics Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 15727.8709 3853.42 49649993 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 18416.7251 260429814 exaa(moxf) Organic Remediation Chlorinated solvents NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 515217.9936 6493.2503 8819.5569 5816.3686 9558.3113 77587.1721 11160.6435 6054.9787 6849.8813 14449.705 2936.219 21308.7313 5828.1014 2182.7329 3274.7376 8204.2319 27381531 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 17979.5545 35231.91305 29920.9838 19686.1352 23512.2454 51879.52435 390749.26325 44079.05825 25081.1672 35379.54835 23028.98755 23028.98755 11015.7093 70647.00135 20503.65195 32091.93435 25864.71185 29365.42685 16560.7797 23239.40945 24911.05255 18300.9528 67213.45105 24462.0927 24858.2279 23942.0279 28990.1124 14175.2175 19260.9344 51855367 nitro Organic Remediation Others NA Symbiobacterium thermophilum IAM 14863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVIII. Incertae Sedis;genus:Symbiobacterium;species:Symbiobacterium thermophilum; 7926.8825 5930.3326 19193.2598 39692.2043 3447.172 4528.2855 6128.2206 9108.3485 156754.3496 6294.8621 16335.1565 9551.0238 3869.6646 3869.6646 24161.8302 10592.8874 4803.8218 6794.1243 4551.293 29519.9432 9761.0426 3833.1453 15936.0692 20970.2384 8917.027 2195.7224 4500.2637 2744.5846 294981571 chitinase Carbon Cycling Carbon degradation Chitin Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 7280.4354 3327.9461 1837.5948 387939518 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 162087.1649 4321.3038 7143.5599 3782.1742 4162.8898 2085.267 2085.267 2790.8861 10749.8049 6272.824 5097.4989 14676.6617 2152.3825 2769.4194 11102.1137 5525.2387 5240.6043 308273446 atza Organic Remediation Herbicides related compound NA uncultured Desulfobacterium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 487745.3094 2453.9242 10777.101 5530.955 2904.5484 8356.5816 93885.7335 3757.1603 4445.9614 2333.5753 2333.5753 8926.3171 5949.4903 5654.0235 8265.2285 3789.0141 2479.7042 7801.3615 3360.9198 2237.1418 2818.8239 15197.0311 338171159 tktA Carbon Cycling Carbon fixation Calvin cycle Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 115473.4616 4541.7911 3962.7607 5516.7171 72301.0182 6024.0873 2234.7578 2234.7578 4760.1091 7622.4091 2495.4873 18586.2177 21396.7399 2663.7369 5674.9056 6594.1702 300864823 amyA Carbon Cycling Carbon degradation Starch Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 21392.1713 4731.4154 3117.9204 3768.1839 297164853 amyA Carbon Cycling Carbon degradation Starch Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 28337.638 11804.3185 294341319 cysI Sulfur Other NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 7728.2273 2565.9374 5499.0786 19118.8946 11376.5083 4872.9871 7307.9529 335878310 PRK Carbon Cycling Carbon fixation Calvin cycle Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 19987.9066 3641.1549 4178.3936 4777.3364 4237.0844 2756.6434 8428.7528 4307.6787 4273.1421 4273.1421 2703.7564 14150.8244 5336.7575 7101.4761 3001.1582 7241.0997 6024.4211 4094.2997 38237.245 8201.5467 11157.7753 4152.2597 11071.8665 5162.567 3759.5116 4835.1664 325110015 amyA Carbon Cycling Carbon degradation Starch Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 20996.6187 7711.7879 21786.8447 2657.2155 2351.7734 2621.336 4085.8457 5013.8954 7168.011 81845.8478 13741.5865 9588.9557 6879.3731 3295.3797 3295.3797 5259.1054 21560.2455 4098.1172 16650.2157 6132.7844 6472.5933 8889.1123 3025.7728 11433.7087 5644.8653 6272.6375 2947.4284 3596.2824 7494.6066 2224.7448 5187.1471 374298468 mer Metal Homeostasis Mercury Detoxification Desulfovibrio africanus str. Walvis Bay superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio africanus; 7509.087 5616.2567 9674.0366 7601.4346 3897.1173 5222.8198 5034.663 3652.4694 5416.171 2501.8436 2501.8436 3545.8783 7020.7766 7644.7892 3853.3192 5972.1766 10897.915 3954.9849 4639.281 7508.8823 3456.6137 8285.7918 7020.2503 8152.8835 2955.7193 13121.4849 4117.7068 6213.6087 8184.8354 29824639 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 605784.6861 40817.7958 7645.1405 5126.4734 268323819 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 6007.3589 3417.0613 4372.0839 67419.669 4138.7156 3324.2727 3324.2727 6641.9436 6137.3668 4500.9849 4175.994 5730.1432 6255.2497 2675.2896 3045.752 6454.8182 10325.0223 5552.2759 7012.6702 2527.7373 3228.5542 6889.5911 2905.2444 291308634 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Neisseria elongata subsp. glycolytica ATCC 29315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria elongata; 9419.8097 7303.4597 6556.3595 4835.2377 8780.7857 5046.9751 4180.1619 40371.0039 119016.8009 7957.3329 5030.3889 2862.0748 2862.0748 3563.5717 4107.5177 4130.7759 7401.2355 9106.5165 4263.948 8696.6142 2796.7927 12032.0316 5262.827 9796.6906 3209.8892 8204.0227 3409.3526 84751.0364 157011616 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 8137.0255 19587.0379 9702.1879 7866.8014 38329.7744 4249.737 11281.4062 20083.9755 7915.9174 155230.7624 11511.3984 8935.6713 16970.6456 5784.5735 5784.5735 6706.2871 22387.701 16821.4504 24402.9374 2607.427 8659.7454 18261.6426 33966.764 25404.2425 28371.159 33233.9567 23151.9815 9457.1248 13161.0661 12765.4089 197624572 tktA Carbon Cycling Carbon fixation Calvin cycle Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 5605.453 2022.9698 196477735 arsc Metal Homeostasis Arsenic Detoxification Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 12590.6205 3883.6299 3112.1771 8612.7536 3947.175 7319.6323 5237.4708 2926.1524 6485.3749 4449.5945 4983.0274 5386.3441 3471.9227 3351.1053 219858660 terc Metal Homeostasis Tellurium Detoxification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 49944.3376 144905813 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 36894.4345 3393.2611 222543232 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 6125.572 3797.2727 11938.1381 2267.0785 3537.2635 4601.653 5474.6831 99714.8746 7871.8751 4461.7956 2909.7909 9280.4493 8999.0297 3746.5115 6452.0914 2654.4225 13582.4088 2766.9272 10513.1693 1781.9764 6375.4322 148628300 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12150.0098 3227.8928 66729.068 23544.8911 17274.8058 4085.9722 4085.9722 5315.8785 3758.1426 296926994 cellobiase Carbon Cycling Carbon degradation Cellulose Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 16805.8451 88973.4527 2686.7352 77195.09 3103.5874 3103.5874 8427.273 4385.1543 8381.7144 187928448 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 6244.1255 30513.9287 9485.0758 4432.27945 12673.32455 16373.5897 7946.386 8663.4177 8663.4177 5438.33555 13145.8761 4299.01965 11815.03955 10003.13405 12196.3596 25331.78675 17967.2002 5631.66505 7835.9154 7027.7515 8530.10305 18454.52205 149746909 cysI Sulfur Other NA Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 5012.2039 4273.3513 291481290 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 23333.2846 4705.82 89096276 linc Organic Remediation Pesticides related compound NA Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12074.7814 5269.2922 2865.1454 103163.8444 3913.2356 4350.9178 354371.048 6943.0821 14485.8094 212455.1769 374349024 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5738.2569 4441.2962 3323.5126 4746.9501 79630.144 6448.1076 3997.5915 7393.3832 7091.5248 5459.9686 2514.7293 2792.0306 6855.5683 5839.1094 13117.1762 5535.1551 8798.0479 3747.1854 3630.5184 4936.7452 3833.8566 9621.0616 89145066 ppk Phosphorus Polyphosphate synthesis NA Microbacterium aurum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 30928.5642 10805.2468 6886.3503 10421.5996 3914.0996 74925.4878 8192.1053 4487.0621 5494.8685 6978.5377 6978.5377 4141.232 9977.2347 7751.317 30567.5614 4989.1483 6996.7394 13122.9159 3786.6163 2190.6633 15723.4258 7226.5219 6024.6687 2250.3815 3993.015 4720.3332 238595140 glx Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 18985.2505 33302.0766 146339300 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13077.5039 10242.486 10947.8095 4467.1774 5569.7826 13737.5231 11748.6837 4376.7117 5015.6972 5227.9175 8045.9059 8045.9059 10917.4676 3607.4852 6163.4725 6235.3131 3181.3958 3537.233 16864.4334 19077.302 58587.5892 11095.8453 12632.9398 4418.7189 6058.5387 5677.5014 256725198 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 16629.8303 119857542 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4840.146 2038.8724 4000.3378 339328023 alkk Organic Remediation Others NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6040.8914 33437.79 17685.2333 4199.8108 25833.8532 11991.7402 18973.8738 3220.8477 3220.8477 6704.0885 12403.423 4358.8012 5171.1689 4039.1588 2655.1852 3433.505 10491.3941 5417.6115 9370.0177 7324.3971 2978568 rubisco Carbon Cycling Carbon fixation Calvin cycle Riftia pachyptila endosymbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7873.9176 7079.7156 2589.7339 4504.4503 6460.4499 8316.7444 4828.6986 16713.6245 3450.7207 5814.1446 4081.5502 4768.1508 4768.1508 14894.4154 4333.3409 8138.6307 3440.2611 20351.0736 4821.7718 9589.8415 4764.0934 4237.843 7655.0069 8256.1223 6231.5532 383779977 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 31949.3692 3230.2807 5801.5251 5551.8693 5080.4409 5080.4409 24285.2955 6221.2067 5432.7772 6028.2237 8075.1473 4699.9633 2404.0663 41799.8918 4454.8172 1730.7764 33273.5499 4549.7843 3102.2366 1480867 silicon_transporter Metal Homeostasis Silicon Transport NA 11079.7472 9537.2366 94957870 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7330.9568 8663.6872 72637.6183 256361491 chitinase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 5631.334 13607.91505 24742.4851 98797.441 9873.6066 7225.4747 10863.89965 7749.0307 257035.1185 11611.90375 14273.5853 11474.34305 7897.0257 10615.6741 8999.9375 7768.8121 7420.06085 11841.4719 8598.40835 25490.51145 17314.2955 24051.3323 7860.8 4644.5376 13681.98045 290470052 xyla Carbon Cycling Carbon degradation Hemicellulose Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1912180.1871 313913.0088 18374.9507 27114.0458 22972.2317 2262.1619 20809.924 3213.9081 53715.0859 3929.6822 9172.3415 2592.2469 2592.2469 9636.8561 9798.0474 20332.1971 17324.5429 5838.6689 3043.23 4791.3571 257785190 4hbcd Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Acidianus infernus superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus; 18394.0368 3693.3382 96830.2966 2778.3892 2778.3892 3834.6997 3612.0703 5522.7107 3446.904 4124.8576 312270112 endoglucanase Carbon Cycling Carbon degradation Cellulose Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 11441.0169 21546.0628 54497.2436 19351.4818 4105.9444 7467.2217 12113.2746 14549.1481 5122.6422 181140.5899 11043.1648 10138.8125 18168.6663 10219.2049 10219.2049 5302.8288 23321.0007 8007.2828 9774.5351 8580.4173 34039.9152 4432.7936 20743.7136 12812.8808 19877.897 6766.3449 11829.3683 6414.9391 6326.4743 402701892 arylest Organic Remediation Aromatics Other aromatics Pseudomonas fragi A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 37020.5092 3923.3753 15620.2483 15620.2483 14029.1903 5218.3201 21101.364 253826075 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9437.9715 3132.691 4629.6227 121998847 arylest Organic Remediation Aromatics Other aromatics Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 6684.7981 11043.9095 248146.9276 2074.4515 2074.4515 4108.4514 5346.0377 2020.8886 3722.2685 400204881 catechol Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens WC-A-157 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 6126.6416 14514.8555 10384.4854 3561.3843 9390.3261 4368.4656 9096.8098 5085.6001 3075.9177 3075.9177 4029.7756 13845.891 4513.7991 7348.8697 10384.1599 55984.5444 3667.279 15023.0673 16366.6735 9226.0726 6047.8406 14426.9117 7096.6767 2796.0097 9080.1811 182412827 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 1146066.8008 7651.4877 4873.2293 5267.4031 12621.0033 4950.8687 68513.1416 4542.0498 8365.1012 59332.3179 8216.6461 7310.7043 2914.7499 2826.5581 10273.5905 3664.7011 2062.4886 5442.0524 5879.932 17424.9782 6373.5867 306921971 mmox Carbon Cycling Methane Methane oxidation Methylovulum miyakonense HT12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylovulum;species:Methylovulum miyakonense; 31558.3842 4270.0151 2206.1926 4203.6151 3833.4099 2979.8951 6296.5828 3945.6333 5247.9571 2633.1465 2428.6284 3202.7376 2590.0077 5745.2555 291302822 merb Metal Homeostasis Mercury Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 10573.4168 9275.5171 4291.4807 76759.0694 4179.3794 3967.8516 46421.1248 46421.1248 9262.1542 9667.1815 4864.408 5052.1071 2161.7058 113729835 glucoamylase Carbon Cycling Carbon degradation Starch Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 282456.4696 11982.6478 2338.4644 2817.5002 4181.0432 8230.3 3231.8683 2280.2174 219965904 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24946.1061 2421.8064 2347.0917 7745.2214 7745.2214 20243.7128 14795.0283 10981.1949 9778.7461 3517.6178 2944.9683 238712370 nrfa Nitrogen Dissimilatory N reduction NA Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 9150.1111 2847.0796 111615152 poba Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 10127.2909 8606.0636 3535.2652 15846.2968 2025.3658 93304.3777 3992.8725 14127.432 4259.1806 2447.7756 2447.7756 8050.7394 21872.2817 9115.9389 4104.2992 2403.539 8636.9684 7906.5472 4687.6851 5931.7876 3648.1324 2547.2879 74038380 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5509.4168 8915.1612 2060.9643 4394.3984 4662.987 5910.0305 98123.1766 11372.0033 17119.5866 4453.1721 4453.1721 5798.7487 8494.9005 5090.8759 11940.0364 3113.6535 5761.92 8015.3414 4859.7839 75850.4203 6743.7659 11095.5248 3027.2621 13167.7593 5106.4917 3086.0296 7399.7497 389742510 badh Organic Remediation Aromatics Other aromatics Stereum hirsutum FP-91666 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Stereaceae;genus:Stereum;species:Stereum hirsutum; 82606.4252 16184.8324 1847.267 12565.6329 4509.3612 5202.8432 3081.9897 145568841 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 198705.3037 7822.3726 6638.9868 8960.4732 3699.9072 3699.9072 5843.918 64016.5476 10128.9193 11351.1806 213963871 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 9111.4122 9688.7496 2545.6841 5322.0295 5866.2504 4368.2858 124877.5094 6228.303 2480.6448 2480.6448 3350.8812 9553.7164 6103.356 4849.9672 5277.0548 5667.8773 2696.5653 3507.4347 6834.6467 2654.9248 14345.2866 7600.9451 3096.2518 3790.9878 5330.4544 1834.2928 8043.4314 169758175 nitro Organic Remediation Others NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 93672.6912 1850.4879 2933.5477 5384.0277 2172.5216 1938.0798 3840.0969 6273.8392 219680623 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 1499731.5447 1047370.429 84749.0119 2278.4847 5382.8553 2649.4909 4724.9332 339475008 ara Carbon Cycling Carbon degradation Hemicellulose Mycosphaerella graminicola IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 5003.6417 4397.1025 4711.4485 4711.4485 2715.7021 2049.0134 11191.9649 16127.9127 330686454 cysI Sulfur Other NA Staphylococcus epidermidis VCU121 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 1517997.6669 13011.9798 17354.4955 3814.4968 71883.3447 27400.8498 3857.9331 9601.743 3243.0301 6640.802 28883.7271 8696.2797 2522.6311 40745321 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7189.6963 4243.0685 7445.5059 2603.874 7694.4285 6935.8868 7305.2809 4609.1558 4672.3826 4545.9399 4545.9399 3630.2926 4161.56 6989.2726 3014.3414 5377.3652 2926.1373 8740.8476 8594.1812 7618.4117 10666.1625 6560.9839 65192.4834 365156730 dehh109 Organic Remediation Chlorinated solvents NA Bacillus smithii 7_3_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus smithii; 10935.8696 4188.5394 3776.1181 4662.4943 4055.6012 5304.1257 4870.1749 2398.8342 4895.3348 7743.6326 322718561 phenol_oxidase Carbon Cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 5703.547 6861.7072 4232.725 3115.3013 374609997 pcpb Organic Remediation Herbicides related compound NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 11678.1144 2422.7013 2702.2223 4287.8272 3243.1119 3243.1119 2484.512 4979.8104 8153.6586 15144.6442 4066.3949 4247.3917 3763.4627 46559012 nrfa Nitrogen Dissimilatory N reduction NA Desulfovibrio salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4906.6848 5606.1724 5513.0803 13784.9539 4917.6823 3391.8917 82009.304 4219.3234 91357.9824 7470.8067 6814.581 4708.1231 4708.1231 18990.8695 4497.5481 10327.9977 6578.256 39271.337 2275.098 4431.4861 8368.334 3143.9625 13265.8924 6216.1811 12832.1211 4728.9298 4052.4174 4636.6336 6013.8155 38427006 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14348.3297 3571.8943 25342.7778 11318.1164 409358983 alkk Organic Remediation Others NA Dietzia alimentaria 72 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia alimentaria; 11630.7888 126570.4128 1998.2359 1998.2359 30177.9709 5340.9418 8816.796 1672.6232 2725.648 317968291 urec Nitrogen Ammonification NA Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 691334.2618 68037.4366 17011.3352 5528.5946 339244.4339 254506273 cda Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 16672.4585 2808.5099 566368.0472 2416.1912 2416.1912 4289.0287 160932140 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 6124.5244 2874.2569 4609.8439 2097.7467 4966.9196 2688.5508 105146.415 5125.8178 2842.7931 8622.4163 5589.5821 6970.3174 2536.5537 2789.7743 5768.5758 6903.5989 3566.7764 2701.3041 5253.2847 2665.8466 6838.9681 15616259 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 75366.7612 32954.4083 3371.2747 2622.1705 70855.8741 3801.3362 5160.3428 9313.6507 5122.1403 5122.1403 15377.7819 2385.7619 10731.9445 8310.116 7014.3722 6076.8404 3348.1709 3867.2147 325288340 ppx Phosphorus Polyphosphate degradation NA Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 9178.7141 336324828 cysI Sulfur Other NA Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 56091.1071 3269.6215 3118.6259 5289.6278 2558.3604 11170.5639 7637.6904 3561.4533 3499.3046 2749.9335 13326.9201 7462.5064 15243.7139 4771.3767 3986.4539 5075.0616 88918533 ppx Phosphorus Polyphosphate degradation NA Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6137.325 25782.0664 381166497 arsc Metal Homeostasis Arsenic Detoxification Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 5109.8088 6112.0197 10670.5341 5194.8127 4971.3607 6365.4621 3335.1681 104235.4731 8484.4519 4122.3115 6476.3159 29272.304 29272.304 2869.9093 11509.4906 13893.7591 3602.8413 6808.0631 4956.0346 3751.3975 20469.2691 3636.8335 12701.9294 2758.0378 5310.2307 8335.237 5654.3459 5295.9971 225194110 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6865.6642 2523.0382 11877.3241 3256.166 3703.3132 9115.4808 9115.4808 3336.1634 4570.0457 4132.1909 4829.0079 4657.8387 3213.4561 4143.3559 2493.0467 107103967 urec Nitrogen Ammonification NA Pseudomonas aeruginosa PACS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 9428.895 2123.8635 2123.8635 10308.2966 116514034 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 66759.3984 54410.7618 5670.4425 119460795 arylest Organic Remediation Aromatics Other aromatics marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6490.9023 52866.71 7207.7794 4921.2676 3665.2573 84600.3323 10690.6455 9829.0356 9829.0356 3147.154 7432.3986 4868.5919 5597.9562 10885.5762 6419.9613 7046.7611 3217.7607 21491.5854 4630.8607 23542.7653 6936.809 9868.8644 4329.3193 6932.63 20492.955 327542064 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8492.2231 20522.6836 13999.1983 118424326 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 35189.4953 52699674 rubisco Carbon Cycling Carbon fixation Calvin cycle Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 18118.4288 18284.0267 5017.9292 2083.0446 2083.0446 15663.71 11270.8615 226952659 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7540.7458 76796557 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacter ethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 9105.17 2400.5175 63054.5581 4556.6837 2838.1394 2838.1394 5626.2404 2089.2004 206679564 mer Metal Homeostasis Mercury Detoxification Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7507.86 407820.4961 5488.2007 4674.7017 7758.0038 5232.5417 6286.7033 4666.779 5141.3878 1652857.6351 5146.1869 8641.0305 5682.577 8042.3245 8042.3245 5232.1355 21510.7566 8242.6219 46670.587 6806.7796 34817.9005 5340.9929 5305.3722 8079.0306 8902.5964 28220.2302 4271.1174 13796.6775 4262.7585 6864.6717 11473.4618 6252.1543 9770.0816 123964148 amyA Carbon Cycling Carbon degradation Starch Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 27542.9343 209809031 chitinase Carbon Cycling Carbon degradation Chitin Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 9157.6099 43725.8241 9734.6869 8269.7914 20410.9824 3031.7692 8067.6505 224919.4923 6532.9765 8610.3687 17966.0855 11984.5207 11984.5207 12283.8709 6709.6628 5063.2467 4008.2821 13532.1371 3519.8518 13696.7611 11629.046 13446.6175 8950.009 5725.9723 3672.898 70997709 rgh Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 16682.7009 78792.6309 71908394 bend Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 6943.8449 5325.8358 3509.9866 4022.5517 11948.9631 7735.6356 7585.2721 8257.6415 3300.8265 4565.0932 3224.3927 5976.5547 45185829 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 43582.2294 3797.2819 6904.4023 3920.4952 5672.6276 2249.1087 3073.3461 2561.7342 1924.2172 2934.6879 4391.8456 11054.3264 7928.9665 196185118 arsc Metal Homeostasis Arsenic Detoxification Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 30804.5636 14794.0011 7408.779 5266.5318 2466.5236 28203.2302 4880.3269 5992.745 2469.4145 91634.9388 99003.0349 15715.9791 4855.2889 4855.2889 8194.3355 8685.8053 4779.8303 8181.3879 6133.3997 2353.1004 5744.6226 5604.2128 2099.5434 30613.648 38682.3658 3645.6057 5922.1593 13037.0391 99083005 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4899.701 3636.7112 101421.5035 3486.6711 3830.5967 3742.864 6602.1093 4112.2584 2134.041 5121.9605 7006.9881 2368.3465 3102.4486 5884.736 300113000 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 185325.8227 4708.9838 62906762 dsrB Sulfur sulfite reduction NA uncultured prokaryote 26412.3734 18503.161 6326.579 3150.3067 4848.6052 2342.2244 117610002 arsc Metal Homeostasis Arsenic Detoxification Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 7353.2781 2388.5829 3194.463 2899.3424 58408.3438 3271.2545 5198.2885 3071.9272 3071.9272 5420.4225 5287.7344 7798.4997 5918.8364 2787.4927 6155.0059 3130.3098 5042.9342 5239.7232 2416.0151 3288.0514 3585.5917 2283.7525 283468372 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4660.5124 4360.3498 4155.7024 4053.0164 5564.1758 2002.0031 307596102 amyA Carbon Cycling Carbon degradation Starch Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 9220.0555 300112996 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 5273.8331 62003585 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7576.1274 39797.7987 198383.5606 336210.5957 4415.3876 4829.7387 75264.4727 3875.5981 3626.513 5596.4742 2549.2686 2549.2686 3962.6292 184471.2265 137627.9054 89148.8626 6235.6209 456884.4553 35395.6566 2561.9345 12729.2463 116797.6644 6398.6354 18014.7404 112267.3421 5125.6415 4058.9062 1632162.5723 28916457 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Coprinellus congregatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinellus; 85467.2371 1646.3474 383937093 chitinase Carbon Cycling Carbon degradation Chitin Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 11611.1064 19931.4474 6613.1978 8000.2788 8774.7406 5836.0569 7085.1835 6855.6394 5983.9092 5917.1773 6642.8264 13794.3328 13794.3328 14167.6806 9414.1441 6421.6986 10950.7476 6503.4891 4664.5099 2457.1925 7539.2149 10449.4485 7031.0182 13968.0058 12460.6854 13714.0875 5507.598 7477.1167 11308.1071 2966.5958 15611.1234 309393258 cysJ Sulfur Reduction NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 35057.1199 6122.7579 6673.2866 26713.4596 3687.1053 2312.8093 3276.3862 3862.0016 16076.4251 86635.9655 6746.8767 5292.2836 10443.1229 17434.2096 17434.2096 2993.4984 5841.1706 4495.6834 5730.4883 2401.6086 3358.4888 8038.6816 2646.9991 3011.981 5623.1371 19941.744 2885.9105 3538.3209 2949.8858 312924629 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Porphyromonas asaccharolytica PR426713P-I superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas asaccharolytica; 47348.5957 2174.8429 2526.9846 3780.3121 103300.0193 4468.4842 5770.382 3226.9025 7574.8767 4164.7185 4923.9989 12675.6452 2745.2462 5654.1301 3075.7931 11144.0265 5868.0636 1709.7415 3043.5849 4711.9898 2800.3564 7382.5819 62426151 hbh Organic Remediation Aromatics BTEX and related aromatics Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 8327.1346 24776.8352 2454.8731 4455.3356 4297.8209 4120.1758 2384.8369 62699.5704 6713.8127 5446.9966 6130.1436 3850.5749 3850.5749 4080.4185 8120.1855 6264.3167 5096.5756 2464.2073 2758.9277 8309.0602 2320.6582 9939.6227 7250.8667 6634.3627 3137.8999 2665.4031 3507.6862 2411.1728 83316994 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28236.0901 4430.8908 210029.8774 5575.1957 6020.5714 4689.1283 2712.4176 2712.4176 9816.7835 8457.7074 6636.6697 5985.5487 6390.7204 2565.5807 365538453 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio ordalii ATCC 33509 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 44098.7562 2337.6722 3452.4999 3051.2239 119401344 oxdb Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 661032.6588 2020.5049 2320.1402 23544.7576 95646.2496 9493.2398 9417.7981 4010.5573 4010.5573 3565.3006 9332.2058 4520.2218 7265.8169 2114.3988 3200.9023 7677.6919 1953.5969 331231046 glx Carbon Cycling Carbon degradation Lignin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 74539.2433 5333.6532 3661.0659 3426.2708 1798.2062 5650.7089 151424738 sqr Sulfur Sulfide Oxidation NA Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 289208.0247 7342.4307 5006.4512 3278.4242 3278.4242 7963.888 4678.5834 2353.1 9702.7469 299772658 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 194323.9529 12255.5836 59914.1885 7221.5663 5340.1944 6330.6785 26605.5079 5361.641 3322.9572 114118.0726 6917.4633 6365.2914 4397.6469 2998.9235 2998.9235 2933.7667 13401.4901 11195.8176 4455.3068 4846.758 6219.2997 3438.7627 14090.8212 3781.441 37851.127 11050.8719 12685.3473 5753.4747 6374.0968 3889.0237 3481.232 7330.9516 269791171 terc Metal Homeostasis Tellurium Detoxification Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 16453.5583 8436.4537 69759.0494 1568.5916 41885.1324 29466018 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8482.7455 14058.8081 6615.1855 4087.9311 3878.5286 47771.4741 6272.4358 13359.486 348027210 amyA Carbon Cycling Carbon degradation Starch Megasphaera elsdenii DSM 20460 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera elsdenii; 5160.6448 9698.9056 1999.4526 12594.9678 3490.1025 146312632 ppx Phosphorus Polyphosphate degradation NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 17584.6096 8999.7539 6645.3894 192764446 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4857.0436 3407.4473 3467.885 5249.914 2520.4657 14586.5075 13832.7032 3008.1014 10815.899 9437.3978 8283.8522 18077868 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4886.1884 14548.6181 158524131 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5527.4399 2108.5857 63485.8605 93583.2 4907.1851 222440029 pcag Organic Remediation Aromatics Other aromatics Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 5193.0672 8730.5619 38618.4993 7834.4783 2411.6911 2411.6911 2979.0844 5315.7312 3868.6979 4575.2997 2285.3326 222149683 pgk Carbon Cycling Carbon fixation Calvin cycle Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6594.0079 9863.9003 5068.2788 2732.8397 1871.6554 4913.3109 2309.2935 2210.8897 2210.8897 3644.1801 2207.2063 4053.9577 14574.926 3652.2788 8063.2157 2135.0622 3829.5578 407801706 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 9193.575 4378.6398 4862.9683 7333.5144 3018.8546 299539806 cysI Sulfur Other NA Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 12199.7362 9017.3011 3639.2223 4002.5151 3829.2083 38910.9839 5395.0881 2212.6437 56163.8127 5144.0726 3908.412 371775958 amyA Carbon Cycling Carbon degradation Starch Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 196757.9966 3735.3091 9745.4369 3783.8769 5781.6245 373248968 rgl Carbon Cycling Carbon degradation Pectin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8082.755 12584.3007 6623.514 4271.3036 2815.0848 9606.5739 5043.4365 14626.045 6412.4806 4192.8394 6335.4955 7709.5291 2553.0462 4117.7287 25940.6145 25423.5247 431752 urec Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 164709.3575 5923.9578 374844255 bphc Organic Remediation Aromatics Polycyclic aromatics Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 8025.1205 3618.976 9395.2086 167772155 ppk Phosphorus Polyphosphate synthesis NA Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 32428.5972 2301.8096 4414.4868 2882.2445 2882.2445 8301.2109 4573.6799 5943.5904 4785.4498 5550.8709 169609659 RgaE Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 25417.0484 11009.83915 29028.2669 9910.0218 8191.871 9567.4324 9038.1418 12117.9887 6113.1857 175596.3899 19747.1951 14274.5052 8932.3742 28346.38225 18636.2563 75997.8066 15949.1613 5561.09585 7143.709 12760.4593 13608.2809 16278.20625 9925.38175 5813.12815 9759.1887 9673.80125 23337.7231 226346814 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5533.4793 3682.5712 4585.3482 3900.8851 17192.0956 2672.4986 3086.009 83841188 PRI Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 38081.8575 6289.0076 6595.0606 8519.5103 2883.35 4501.9356 108764850 dmdA Sulfur DMSP degradation NA Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9053.3829 11320.8754 2193.7809 3588.2784 2441.7319 72623.4838 5703.049 4555.2725 2755.3081 2755.3081 2483.8593 8508.9827 4317.6727 4317.2305 8910.9644 27567.0673 22936.3641 6539.5856 1973.6565 9520.148 11185.7098 6740.2888 2074.6303 4645.2183 6742.3493 2896.0423 12561.5413 189500473 phytase Phosphorus Phytic acid hydrolysis NA Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 7457.3127 5519.9603 39940908 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9697.3364 5184.6739 15677.7989 5414.1748 14049.1219 3762.1642 4034.2219 84865.4838 7392.7098 3528.3519 3528.3519 5160.15 3814.2639 2555.0111 6349.2518 7876.827 3937.0821 5199.1768 3059.8536 7875.936 188688.2635 238729377 cysJ Sulfur Reduction NA Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 7133.5261 2174.9711 2174.9711 195541895 nosz Nitrogen Denitrification NA uncultured bacterium 1042 superkingdom:Bacteria; 9752.1362 6247.6876 4672.1815 4956.8958 8769.9635 67057.2367 7566.5583 5905.354 7603.1527 13958.6286 13958.6286 30354.2675 8178.4503 4928.9266 6153.6434 24568.0127 6993.5151 5891.028 6264.092 3488.516 11067.3418 5727.3473 2186.2795 4401.8828 5294.7497 2531.4746 5770.2144 296027 exoglucanase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7383.1152 4210.9345 4201.8019 3106.2456 3852.4429 7991.5813 4266.9162 2890.2086 2890.2086 7729.818 9195.6547 4037.7201 3820.9687 4995.9863 2621.6354 5324.8047 7110.5653 6285.9183 2784.4054 28542635 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 107120.2286 3725.713 3725.713 124389559 rubisco Carbon Cycling Carbon fixation Calvin cycle Halorhodospira halochloris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 8194.0986 5756.4097 296849675 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 53440.5913 6037.6571 5369.7562 5174.628 4183.4989 7230.0947 7230.0947 6282.1626 6791.6038 3155.5926 30158.0294 119714389 alkb Organic Remediation Other Hydrocarbons NA Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 19243.3184 5626.9924 16850.3062 2579.9812 3579.9715 2861.153 126072.512 7184.4068 5410.9849 5410.9849 5089.9789 4411.3839 110928.7884 2990.6692 4411.1829 8013.6996 2106.3537 9425.2777 6532.0619 7527.5813 2794.6646 3297.0901 4223.0622 3331.3152 4867.0734 224823588 arsc Metal Homeostasis Arsenic Detoxification Pseudogulbenkiania ferrooxidans 2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania;species:Pseudogulbenkiania ferrooxidans; 297785.9829 15232.7739 11276.667 22916.4365 2123.7631 2123.7631 6141.4607 3101.3598 5680.1244 2387.7652 5078.867 5966.7272 2347.8301 7897.5656 12536.1494 5056.6198 2278.8559 5610.1416 3904.8241 2350.811 295412266 xamo Organic Remediation Other Hydrocarbons NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 5728.982 13751.92135 7782.4403 6699.4912 2851.911 7152.40255 5600.3591 6289.0529 2971.989 2971.989 16685.6325 11423.23705 4569.30345 14814.4979 6859.9742 5238.64505 9436.34125 9114.3506 4013.5967 15851.3211 5481.104 8929.30335 2759.5154 5750.03685 4518.87225 2996.53525 6914.47925 110592181 nirs Nitrogen Denitrification NA uncultured organism 7241.0264 2533.401 10291.4137 5185.1967 8719.2562 3404.2701 3937.1329 3668.6497 2559.4174 5644.3354 3023.8709 163749607 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 8794.334 16221.6984 307745723 ppx Phosphorus Polyphosphate degradation NA Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 5299.6274 51932.0936 3737.5413 5875.9226 3086.7729 64729.2547 4338.4913 6054.4178 4666.8197 25018.3304 4050.8655 2076.9318 2332.434 9131.153 3395.0619 5363.1249 1978.9121 4790.974 3110.5436 386815425 chitinase Carbon Cycling Carbon degradation Chitin Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 320666.0541 12203.7225 50542716 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 8484.949 4545.6247 2371.8771 6014.5768 4590.1674 2876.0427 2876.0427 7176.1494 8014.8427 19262.822 46434.2675 9653.1563 2679.7097 23246.9378 4655.8459 12199.9748 1698.1835 3564.574 4133.9621 116205992 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7271.59365 19604.8817 2493.61085 4257.70445 4729.493 5254.888 9650.2074 5000.96785 109004.82995 10011.3818 7620.26375 8269.7707 3446.7344 3446.7344 3578.89255 11313.54445 8509.6183 6185.2394 8693.1377 5568.8568 3174.68425 6268.83925 13813.48935 6472.19135 12599.1169 7086.1018 8617.53805 2949.6291 4892.44375 6052.7592 10261.6107 211959297 hbh Organic Remediation Aromatics BTEX and related aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7689.3235 4668.1475 3406.1564 11496145 mer Metal Homeostasis Mercury Detoxification Pseudoalteromonas haloplanktis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5691.0791 2872.5056 3548.8595 4664.9048 2828018 one_ring_23diox Organic Remediation Aromatics Other aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 29062.1469 8133.2238 2415.0745 6393.0096 10975.5219 3797.3089 8403.0942 3301.9476 7151.1443 4061.0605 2862.7875 2862.7875 2893.2386 6875.9284 7261.8613 5282.9442 5864.9205 5918.6934 2121.8233 3567.1934 6306.342 2258.5095 8530.8785 7676.7286 1925.9288 3507.5443 15767.0927 24916.7335 373942717 nifh Nitrogen Nitrogen fixation NA Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 7451.9619 3735.9634 5835.4544 82949.8788 6035.5228 3606.9892 6821.1838 3955.4377 7253.7469 3488.01 2684.8959 19244.7444 7056.9885 5515.6394 3383.1664 3876.7199 5482.9643 380302280 amyA Carbon Cycling Carbon degradation Starch Brachybacterium squillarum M-6-3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 56824.964 5585.3126 3107.7434 3383.4762 4317.9772 2852.1569 108421.6824 7295.0044 8041.0413 4002.9336 4002.9336 12183.8518 5243.7296 4457.1474 8647.506 5425.4374 4801.2034 2964.5246 6503.589 36720.5539 5501.0339 6604.0872 3804.2681 3622.8484 4118.1907 2878.4503 6352.5564 124899078 exochitinase Carbon Cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 13309.1403 6728.6034 2982.5087 10394.8061 6692.2301 103730.9897 4605.6972 3190.7507 2958.778 2958.778 27983.0446 17993.9232 11493.2341 2819.08615 3585.4265 5280.3175 4896.0605 5932.7887 1604.3249 4171.7215 4048.3192 3115.6605 4535.1827 354583351 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 8773.5306 2717.6936 10881.6147 2326.2002 2326.2002 5449.7879 8472.9686 7551.2727 4387.386 58422509 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26056.8268 399109806 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas pseudoalcaligenes CECT 5344 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 13410.4911 24068.1184 6309.4867 4309.1329 21094.0508 3047.0362 4350.4185 5427.0898 17683.3974 2835.4713 4520.3876 5854.2198 6024.5974 2621.074 10308.3707 4603.7378 338732554 phytase Phosphorus Phytic acid hydrolysis NA Simkania negevensis Z superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 7204.1052 77378525 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4922.1919 47604.4212 4646.8723 189425041 mer Metal Homeostasis Mercury Detoxification Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 8663.4664 7751.2503 5458.9896 5160.0215 219543416 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 22638.3294 2210.3701 3862.0986 5584.0433 3194.8816 79425.5264 5397.88 3652.6714 3652.6714 8250.5929 4560.9468 7925.2621 3993.0653 3563.8516 9183.6172 8268.1085 6074.1077 4910.4642 3541.3472 4843.1151 9105753 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7594.168 29182.6334 5716.6025 5435.6174 5145.0037 7791.1406 7012.2373 3466.9422 3466.9422 2928.9308 6521.0008 5119.5714 4724.675 9074.3996 7307.2016 3363.6875 5030.1302 9833.1843 2824.3396 4263.5243 407776461 proO Organic Remediation Aromatics Other aromatics Nitratireductor pacificus pht-3B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 17713.4435 73763090 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10675.1447 9948.6188 4062.0086 10392.1759 8741.7558 6413.1605 7965.8821 2777.3711 2777.3711 6681.534 5345.7799 3469.3067 8499.2848 13885.0616 2188.0536 8976.662 6931.2132 13876.8096 2701.2295 6244.9768 3693.7672 22616.4001 332992999 pula Carbon Cycling Carbon degradation Starch Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 622916.8806 40462.3507 3270.8463 218224681 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 9038.2471 229762714 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 9662.3581 7435.246 5176.2453 8673.9946 23016.2021 11485.9333 9791.896 9791.896 2904.8928 7464.9658 8680.7213 8021.7764 5344.0721 2392.2937 6449.4126 9565.4927 5717.426 8591.3124 3081.8751 348172246 chitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora spinosa NRRL 18395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora spinosa; 518179.5615 65269.6684 5053.7631 3037.2038 3037.2038 187477747 tktA Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 770945.1466 7546.4307 17345.4372 3364.0707 4369.9519 6311.1672 65259.3249 3837.4461 4934.7117 3514.8448 3514.8448 8677.7114 7352.5984 39747.8595 3989.9408 2276.8613 3096.3676 10437.0133 3545.0121 11653.0905 8519.2745 9949.7851 4792.9516 4866.2354 3530.6068 7427.8265 4767.2787 119509841 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 171970.8996 5213.3732 4352.5204 12889.5763 7062.1908 3314.288 6258.8091 70993962 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 16850.3303 8797.3017 1959.3262 294477398 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 5612.9134 14583.7312 5878.4048 5374.5026 5889.1028 2154.7145 2154.7145 26940.0713 150170.4742 4356.5205 22555.9727 4762.7292 6935.9904 2758.283 2499.8052 23100574 xyla Carbon Cycling Carbon degradation Hemicellulose Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 5791.7099 2428.4406 4053.6085 73131.8386 5527.0891 3150.8511 7266.6294 4694.0859 4445.2411 5102.664 6091.9989 2519.9686 9908.8461 5070.6934 2761.2104 3867.7926 3826.077 7398.9567 219563124 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 22049.5972 2208.6242 5437.914 2317.9859 329851663 alginase Carbon Cycling Carbon degradation Alginate Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 717660.3185 2579.9741 8556.2274 3421.6974 384072827 xyla Carbon Cycling Carbon degradation Hemicellulose Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 9643.8377 89396.0425 4930.4191 2597.2335 2597.2335 16022.315 7216.1963 5310.0363 2684.3373 14113.3773 8465.8473 6304.6393 2879.2317 5247.8753 374413723 dsra Sulfur sulfite reduction NA uncultured prokaryote 9355.6159 7497.3829 12211.6083 6508.5269 3394.5739 4035.0192 7854.9377 14556.5648 6152.0363 192893.4789 9375.3264 16189.0147 5343.8947 5343.8947 2828.0215 8647.1194 5807.0342 10249.7235 3391.7953 5886.1023 3208.8259 17169.9246 10777.3586 13548.9774 2515.2754 6270.8484 5614.397 7050.2336 221739354 tfdb Organic Remediation Aromatics Chlorinated aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 8534.6951 124241.7011 4057.5238 10291.9277 4090.5618 10459.2539 2757.7336 2757.7336 3363.2129 5845.6784 4431.1345 8144.6655 3480.8582 8615.0809 4423.8146 5543.732 4962.1781 4809.337 3164.91 6203.1669 300533681 amyA Carbon Cycling Carbon degradation Starch Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 24053.8698 3010.0549 3010.0549 3775.8928 4512.0311 2456.7517 225204986 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 5334.4538 3698.2579 2806.9383 4163.3267 2938.5291 5580.2666 4086.1616 2443.7895 3956.1642 5997.2019 2681.8916 2730.2147 2853.5458 2028.834 4681.8922 261820848 nitro Organic Remediation Others NA Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 71607.8497 8830.3489 118287.5492 4649.025 62671.6396 7718.6824 5812.816 4881.2949 3560.1115 3171.1443 2079.5139 6588.3242 1644.3411 4100.0652 3133.9191 24984.5192 88812978 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7988.7155 74528.2711 2467.617 24197.4764 3536.3019 372474191 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 79447.7185 11186.2322 48518.1004 7115.6359 2487.2314 5570.8723 4824.2821 6864.4264 3147.4821 92784.7737 10653.7207 6126.3123 8406.8278 4081.9359 4081.9359 4177.1399 6182.2151 7780.6359 17539.0652 4367.5302 8229.1525 14890.0044 4555.0382 13798.41 12912.0619 30774.8637 6068.1213 5018.7818 5277.7591 4171.4045 5324.7457 212558659 b_lactamase Virulence Antibiotic resistance Degradation Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 45188.355 57233751 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 2060664.0197 569027.9891 49656.7739 2572.5662 6945.9914 2965.3474 145878.0509 5108.5851 6661.5802 5280.4747 3116.88 3116.88 3094.9594 9258.6181 5689.2439 3736.8357 5724.8253 6636.5133 2269.8243 3043.5185 7702.6097 2838.7952 11588.5374 6249.9786 6771.1292 2352.6561 5280.0508 3227.6487 2804.2318 5463.8868 162312448 amyA Carbon Cycling Carbon degradation Starch Schizosaccharomyces pombe 972h- superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces pombe; 21888.5515 83840204 FBPase Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 74481.7721 5309.5427 3448.5622 4037.5886 4057.7529 5746.575 3974.0207 30142112 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6099.6704 10609.8807 4135.2226 5633.7029 6873.4334 4802.6941 53101.9136 4242.3612 4242.3612 7460.7896 4887.2205 6774.1337 48061.8393 2587.4094 8195.8636 17744.8144 6777.8807 23307.9077 2449.6642 10361.2104 3718.7342 6422.5328 315638474 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 214184.75 11675.4354 365853280 ara Carbon Cycling Carbon degradation Hemicellulose Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 13586.779 340793646 amyA Carbon Cycling Carbon degradation Starch Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 44626.9137 2350.4877 2380.0939 2031.668 2031.668 47802.4153 4095.7233 4327.0838 7160.2801 2872.3988 2736.5473 5478.7061 1662.7363 4709.148 375055956 cysI Sulfur Other NA Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 386338.5065 25526.6962 2711.564 11127.0369 3963.1221 8020.8601 5236.8414 3163.2456 212536342 pme_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 12901.4953 101660.9231 6849.7588 3729.28 127228.5588 15324.6007 7234.8761 2141.4312 354954680 pcag Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1008011.7008 118444.099 12669.1416 10769.3938 5189.3702 5838.4225 1792.9035 6978.8584 487444 amyA Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5773.7676 7499.2248 7046.5938 92887.2111 13699.9824 4696.0622 97497.9302 5505.1976 3474.9189 4825.9287 2550.6988 8698.2477 6267.4337 6431.01 6781.2869 3294.0876 5192.7382 4186.8109 8264.2461 8476.3357 7457.6637 4207.5697 3119.5877 15087.363 2699.5326 6267.9952 158141610 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 31330.02 116043947 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 235267.2171 15293.7033 10263.9275 3257.7969 4739.0268 2785.2026 6306.6557 4016.4063 2636.0007 2636.0007 3563.1677 7274.8152 4961.7638 5828.5507 2625.3407 2505.5838 347529841 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 17411.9728 7410.5946 2170.0354 6336.4611 3276.9644 3276.9644 21643.0396 386285777 cyma Organic Remediation Aromatics Other aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6818.8092 102971.6453 6817.745 5508.5943 3785.2545 3785.2545 7048.1169 5532.4046 5043.327 15308.323 3894.2615 3995.7642 2993.9386 3120.7038 13736.2597 2717.678 386713773 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 10076.9624 3628.4314 6099.6307 18946.8653 4521.8452 23412.1112 2223.4157 3398.2547 16329675 urec Nitrogen Ammonification NA Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 425032.5454 253778164 amyA Carbon Cycling Carbon degradation Starch Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 9610.9917 4565.4442 158521609 mer Metal Homeostasis Mercury Detoxification Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 42756.4087 9719.2541 2977.1274 4211.4243 2562.7302 2562.7302 2883.7426 4758.7956 29170.3017 16229.183 86608960 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5078.9566 2724.0532 3150.2999 4269.1094 67091.6699 9293.8344 3557.4841 6680.8383 4833.4069 3340.6482 11413.0074 23403.3699 7788.4676 9518.0384 2621.1711 2997.7523 4319.5449 551073.7545 182680368 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 16899.1557 94640.9312 6230.6261 4669.9068 5050.0774 4540.1065 6453.3097 6588.6439 3130.5697 5633.8457 8550.8534 8550.8534 4968.9769 9850.1938 7202.5651 4072.1799 6358.428 12985.0978 5713.6696 21022.2137 15694.9963 11706.8019 23828.405 4540.5388 5083.8292 2458.7826 111073737 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 451026.712 7673.4711 2122.7756 3774.1336 4563.1498 2900.0697 66750.43765 8198.4513 4239.6752 4863.72475 12454.3103 3831.8432 4965.0198 11744.6768 4737.2074 5973.13225 3073.7683 5042.9738 5517.0021 33391331 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6118.4021 3332.319 7803.3442 2208.0377 6239.1773 3745.6327 56474.6071 10158.8137 5201.1859 34175.3201 6212.3557 5379.5765 3017.9489 5108.2258 3419.2031 7225.7123 6528.0747 4954.6773 2536.1977 5684.7647 254504072 phn Organic Remediation Herbicides related compound NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 5786.3475 2939.3956 6610.5049 3657.25 20968.7454 5091.0599 2939.7501 1931.9285 300332909 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 7465.7971 113878864 ara Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8910.7469 80563496 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17309.7282 3418.0677 5086.0107 5018.7317 3354.3428 3354.3428 4915.9213 5785.3883 5606.4242 63445.1974 3846.6482 3007.592 6078.9531 5525.3024 2124.973 4862.232 157910791 exaa(moxf) Organic Remediation Chlorinated solvents NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 6090.0278 4419.1112 57682.2458 2548.4048 6469.2067 6849.821 4848.5162 7397.4674 1844.4684 2499.1485 303278072 mannanase Carbon Cycling Carbon degradation Hemicellulose Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 13355.8326 8881.976 27871.5652 6255.8515 7125.89905 6636.8581 8156.35315 10425.6343 8817.7073 3106752.98035 11402.816 12973.98175 6871.8961 6871.8961 15099.36485 57147.3549 13264.93535 7546.7261 4584.57095 6017.12795 10996.88405 5720.08575 10049.6822 10982.3733 5413.2415 6634.8763 14360.703 4178.84905 42566.7221 73537839 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 34851.0529 2224.3562 6320.5226 375266799 cysJ Sulfur Reduction NA Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 21867.3972 4829.1934 3960.0288 15005.7915 2192.72 154175407 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 26114.4608 5527.6615 3709.1863 4491.1345 2240.2616 3354.6914 3079.1132 88445.8985 4287.0527 5171.4689 6030.7244 4527.986 5443.5164 5752.7121 4809.4232 2759.9348 10144.6316 7301.0033 6313.948 6447.8036 3416.1111 3179.7728 3904.1271 2076.4437 4383.548 407804543 xylj Organic Remediation Aromatics BTEX and related aromatics Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 16432.2348 10958.6286 4341.6644 6110.6132 4044.0933 4044.0933 5604.0004 4340.17 3511.5823 7252.8781 4499.5988 2984.9107 6554.8955 146190102 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6122.9221 18931.1777 2150.7237 3048.5287 5736.5407 62129.5048 9851.9492 2074.0816 2074.0816 4891.3458 3022.4135 2078.5054 5862.0615 8802.3703 5253.5599 2998.4504 3443.9352 28192.8379 311069491 amyA Carbon Cycling Carbon degradation Starch Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 13383.4213 156066396 hsp90_Fornicata Other Phylogenetic NA Spironucleus vortens superkingdom:Eukaryota;family:Hexamitidae;genus:Spironucleus; 8523.2382 7523.7979 4853.1609 2117.0716 8344.7133 4883.4667 240357.0312 14284.0396 24497.7447 11991.7062 183976700 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10399.6815 310793135 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 17024.4491 4493.4333 4215.5289 7101.5716 4811.46 2832.1188 3574.2688 4197.238 4587.0462 4587.0462 6904.0378 8719.3633 4386.3494 5658.9054 4852.5486 2379.979 5687.9629 3865.8812 6918.7904 5512.618 3942.6683 3174.9195 383282919 amyA Carbon Cycling Carbon degradation Starch Streptococcus salivarius PS4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 6283.1615 5602.7562 7408.1865 1662.5305 3907.9796 257455639 arsc Metal Homeostasis Arsenic Detoxification Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 9990.8035 6262.478 193086561 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 11778.8673 8501.1827 32038.1706 6739.852 3279.2355 2953.7087 4051.5124 99192.9832 5575.6761 3035.1236 6983.4215 4107.0356 4107.0356 5835.8993 4401.6099 3922.9545 3759.3641 9125.1567 5750.5526 8777.4475 2662.9699 3356.0096 300023134 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 17443.1832 2731.3391 85670214 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5053.0482 7800.5549 2688.1113 2688.1113 5040.711 4855.8613 7440.5213 7802.5845 12495.6139 334296393 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Erysipelothrix rhusiopathiae str. Fujisawa superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 38263.8192 2471.9101 90078.38 19833.3144 7590.5054 3437.2813 11076.7231 7116.0295 8317.4773 8546939 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 5527.3419 20761.3586 19806.4143 45266.5492 4655.2013 9212.6716 3498.9932 73002.792 7889.649 5891.2268 6729.7907 6736.2184 6736.2184 13343.0902 8462.1379 3496.6103 4461.628 7169.1042 18018.459 17957.4711 46205.866 14672.4346 12959.4207 5618.1022 3607.1185 18604.8655 4253.9125 190572032 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. CT14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5788.551 5870.9148 2509.5923 4696.921 8426.5127 2777.7457 60229.4167 3697.9249 8251.9212 5004.4945 3517.7782 7946.9877 9598.942 5591.9924 6802.3428 3846.6889 2165.9958 110283124 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8409.1336 6030.8003 2517.6596 3115.2203 3923.7014 6370.9208 2020.859 2020.859 4016.5232 6132.2185 3658.3958 5575.7606 4253.0958 2567.8819 10241.7213 5635.7107 10826.5243 5557.8934 1822.3694 4151.1571 10063.6622 120867521 terc Metal Homeostasis Tellurium Detoxification Neisseria meningitidis FAM18 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 31928.4105 4089.9874 3062.4674 2696.5136 9032.0171 15427.3108 59979.8212 5678.2277 4624.561 20958.0597 20958.0597 6108.7723 7620.2421 5888.8151 7756.9879 6900.0057 2219.0567 3647.1995 3560.3251 5582.9553 383781416 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 426412.8803 14529.378 2336.3369 18769.7824 2584.4018 10299.8677 6468706 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 14133.5102 4135.3202 8814.7939 4854.2565 7911.8882 2231.7384 49612292 cmci Organic Remediation Aromatics Other aromatics Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 7530.4943 323799.9802 2010.4342 177921.4886 5187.1028 5677.0653 2882.1305 2882.1305 6117.7903 2908.9226 3530.9799 9856.878 2548.6186 6928.5941 2732.8777 4575.3231 9134.0375 169793374 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7700.8829 4767.2851 3773.477 2465.3786 23175.5885 2066.1813 2066.1813 3812.0391 15056.3533 6280.9206 3580.1727 2542.8833 7334.5526 3157702 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 7045.9706 8448.2109 3597.432 45301.2282 11163.658 11163.658 6279.4067 5760.8319 14486.0231 8042.5955 52401.9625 4822.4299 2488.724 4483.3871 398344759 chnd Organic Remediation Other Hydrocarbons NA Leptospira inadai serovar Lyme str. 10 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira inadai; 5275.6956 3910.9255 4109.1151 10530.8774 365855193 mer Metal Homeostasis Mercury Detoxification Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4704.8921 4870.5124 16684.9198 2737.4163 3024.2547 5329.3515 4644.7895 4806.5741 3047.8496 87648.7948 3701.2325 3510.1206 5991.2304 3885.2503 3885.2503 3212.8763 7972.3316 5202.1839 7078.0892 3790.492 4484.7028 9580.804 7125.0152 11589.8008 174123.9631 8453.8935 3487.018 4797.0531 3009.7949 2242.9605 387845496 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 21036.2365 182504.9113 2629.5347 5349.8165 3608.3779 34113.2462 112463241 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 36374.7657 6885.4358 3991.0541 4042.6068 2978.0835 121137.8543 4995.4057 4401.2234 5831.7336 3579.3122 3579.3122 13907.3917 6436.1039 4184.6096 5585.2954 10813.2718 3103.8506 7108.1488 7272.883 10333.0562 2744.24 5075.5496 29610420 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 10319.1286 22651.5568 4507.0782 2475.5519 3663.4029 7311.7325 3174.0085 6328.1224 5161.8717 5161.8717 10370.3228 2567.786 3756.4441 2270.0083 3072.754 1753218 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 5520.1061 2775.2512 2323.0082 2714.2195 93215.7838 3905.8303 6298.279 4684.5841 4321.0872 2495.2442 2295.4096 2380.4881 5957.8632 5172.1749 2316.1265 2558.6673 4119.5467 2124.3128 7130.8069 218059668 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Arxula adeninivorans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Blastobotrys; 8977.7786 31343.5207 25068.173 4716.5387 100400.6775 5543.7246 4199.1076 126392.892 6412.4915 7923.8674 8025.4374 5559.3779 5559.3779 9457.9097 6149.8922 7990.3359 3815.4779 3042.7535 10486.5997 2807.8047 11785.5923 8487.9092 8454.6093 10843.3088 5061.0835 4633.3057 10192.4563 6066.5592 226347086 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67109.513 11564.2484 371720918 chitinase Carbon Cycling Carbon degradation Chitin Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 52911.2473 3300.212 2696.1234 3038.2888 4315.3419 2950.8143 2950.8143 3082.0928 11297.1756 3834.9125 310643804 ppx Phosphorus Polyphosphate degradation NA Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 27560.4499 7994.8153 3219.7153 111070.5417 4808.4187 77974634 ppx Phosphorus Polyphosphate degradation NA Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 9270.509 5241.2577 9777.2305 3341.4148 51604.352 14643.039 14643.039 5830.6842 6054.3837 4434.9136 5745.3395 2400.5724 2263.9006 17753.9163 121495570 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16247.1256 4613.3755 4713.9809 263878.8183 4365.651 10674.1108 8192.2622 8415.1019 5580.3256 5083.7592 3936.4623 3338.4468 3315.9821 13706.3137 7425.3253 6618.861 3022.1945 7469.1948 5927.9607 3959.0866 8850.2729 421960207 nosz Nitrogen Denitrification NA Campylobacter showae CSUNSWCD superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 82402.5669 7028.5547 4395.6625 3468.631 3861.17 2595.5548 2595.5548 10220.7174 3258.8126 4267.7606 5209.722 4037.5439 4623.3741 5935.1241 5962.3991 336297858 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 201595.7414 8874.1285 4705.5898 42774.8838 163852786 amie Organic Remediation Aromatics Other aromatics Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 85783.9502 32827.1775 31001.698 17018.52 23421.7078 6414.9525 6360.9078 8664.4975 4040.2369 185524.2367 10103.8661 9867.7449 11769.27 7602.7922 7602.7922 6536.8546 6070.7316 9137.5377 16401.3081 3878.2787 6531.8713 3223.2569 5750.6858 17246.9829 4969.2781 15337.0344 14100.6228 17136.1631 5221.5249 5379.1155 8317.0063 2463.4385 5386.0651 269838062 arsm Metal Homeostasis Arsenic Detoxification Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 10861.45 7374.1457 25953.2684 11194.4499 6762.0209 2932.0858 20425.1305 3934.171 207509.0076 9247.5008 20388.8213 14048.3378 8544.5233 8544.5233 5069.6143 16231.0073 12007.4139 12059.2261 2549.0088 5151.5805 23910.839 4477.5307 23800.5743 16116.2617 28816.956 7763.5127 12813.2075 4802.4453 3731.5365 6361.3483 383763896 ppk Phosphorus Polyphosphate synthesis NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 13408.6167 2893.3355 3467.7788 21226.6753 8342.1761 4770.938 4321.3262 180427.1371 5165.9035 17861.9267 4509.8471 2760.7516 2760.7516 2887.9811 13377.6967 4823.4966 20770.6381 5160.5179 13822.9798 14647.8075 3431.9938 6938.1121 5254.779 11741.1862 10927.3637 16578.1281 3365.6815 7352.0835 16996.7348 3666.5732 7203.3865 365265802 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 13947.4491 3342.5775 3288.5908 3288.5908 311106234 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 241700.0548 10015.6917 6566.9763 8924.857 62825697 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6143.2881 10416.985 3667.3155 6325.1927 1738.8106 70998815 nirk Nitrogen Denitrification NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 91289.7727 6223.1056 4033.4054 4033.4054 2675.9608 3368.579 167354034 bphF1 Organic Remediation Aromatics Polycyclic aromatics Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 29449.2962 18497.5223 5217.0631 3455.7955 7717.2809 21777.745 14916.7003 8401.9256 9134.9553 14087.3458 89941455 cellobiase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 10781.978 4016.2234 2916.1006 115556.9269 7849.7804 3495.5751 2680.7514 2680.7514 4858.6377 8044.7364 5090.0344 10804.3775 4674.9777 2975.3868 9611.4073 8125.6626 8850.931 7135.5941 5177.2713 5267.8768 2271.0768 4883.2635 41815549 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema denticola ATCC 35405 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 5693.4294 8750.3896 302926182 rgl Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 329316.1055 37028.955 13553.6193 12237.0869 20690.1644 20722.55895 501196.8378 24675.778 18055.0648 116216.7487 23649.8335 32324.9384 500780.22505 13510.04475 255931851 p450aro Organic Remediation Aromatics polycyclic aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 6007.6439 6588.3294 16059.2783 71441.0412 4407.1916 35363.8114 7526.1577 4672.7689 11524.407 6626.9982 8122.9867 4185.2949 3737.0644 13087.0189 2304.6991 4546.1041 4962.836 34604744 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6837.9781 6361.3833 5794.5047 2692.3538 2683.8662 1779.1792 2468.6864 16814.5574 5289.7773 302408715 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 38435.0347 5922.3205 4726.4113 8229.4957 299772632 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 100590.4713 3748.729 46986.0501 6533.7414 6457.0161 311746651 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 7598.2439 2566.3629 3249.9826 4070.7747 65364.3147 3384.2534 6634.3442 4773.2205 3196.5323 3196.5323 2945.3106 6459.8424 6405.0495 3608.2036 4581.8235 5251.4619 2918.3861 2831.6194 2835.5155 4092.8898 5635.6425 2696.8524 4729.2216 3840.7253 2595.2596 4794.5208 49611352 napa Nitrogen Dissimilatory N reduction NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 12450.2109 4496.4409 2159.0364 4711.6239 40009.2639 225632.8688 4248.1347 4047.2532 5399.8231 5399.8231 5149.995 6505.509 4424.7681 5703.0567 2446.1533 4885.5295 6716.0694 2679.6578 6659.4637 2076.8691 334102752 tfth Organic Remediation Aromatics Chlorinated aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 6873.8663 10970.9825 2305.4865 5039.7629 6696.7062 4528.9004 79160.3005 4140.0954 4374.4858 2192.4033 2192.4033 6233.8602 4389.3857 6569.1552 2393.6873 3114.7838 5372.9139 2510.8553 10528.6892 4597.3603 7160.5675 3965.1476 4340.9564 6265.178 2956.0901 6666.5432 302345213 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 5962.8543 2193.5248 3633.935 6106.6556 3219.1192 124656.9846 5069.4434 4747.4416 6939.4261 2270.4235 2270.4235 3545.4962 8783.0377 6411.9091 13147.4101 10956.816 5081.8583 3127.9806 3133.414 8254.426 2527.1643 16646.875 8130.0851 9768.6381 2710.618 6372.4775 5030.9197 4349.5742 9026.4216 357020921 amyA Carbon Cycling Carbon degradation Starch Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 793667.3511 3545.715 67833.8124 9659.2681 3146.4587 3146.4587 3063.2767 4737.0875 8516.3128 5488.222 7363.6492 2635.5356 3404.6954 9246.969 15338.5199 7541.7971 8675.9675 3296.446 6007.1846 4706.834 5212.5283 121583073 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 7887.4802 10588.0798 4173.5896 2925.6051 2418.6424 2920.5757 14133.8751 2900.8471 2900.8471 6862.2081 4740.3194 3258.478 8999.1803 3306.7765 12001.5876 7876.4559 6376.6511 2333.179 3419.6497 5427.0928 2385.8246 5940.6557 343493509 chitinase Carbon Cycling Carbon degradation Chitin Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 19220.9603 156857773 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 10151.9454 67525701 amyA Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5052.9162 2499.2529 2416.9091 5691.38965 5164.9758 85277.6243 6238.1749 2589.4232 2589.4232 3577.5657 10742.9178 7031.7995 6558.9468 7710.669 3066.5589 9303.2594 3549.129 15555.1962 8979.7223 8809.6277 4939.495 6098.0108 5135.4356 304398833 amyA Carbon Cycling Carbon degradation Starch Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 53024.6624 386811312 hao Nitrogen Nitrification NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 4989.7698 4784.0858 2519.6661 4456.5293 6119.9594 2656.0029 2656.0029 2261.3931 2013.1417 2363.0061 5906.788 320534664 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 6100.8043 4320.4413 4032.7026 375032.7895 5171.7557 2804.6384 99083177 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12347.2173 5388.7806 6225.8796 4343.7981 9654.2556 6582.7543 2261.6815 3356.3073 149378233 amyA Carbon Cycling Carbon degradation Starch Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6536.2786 5877.7637 4929.9804 2839.4238 5404.0818 3953.8316 5972.9185 3276.7442 3482.7802 6014.0922 166797394 soxY Sulfur Sulfur Oxidation NA Vesicomya sp. mt-II symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8769.0074 4300.7008 14294.5852 222544018 SoxB Sulfur Sulfur Oxidation NA uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 8183.2829 3342.5462 2485.0893 3215.461 4476.9737 2704.8174 2704.8174 2563.2715 1839.6461 29608437 linb Organic Remediation Pesticides related compound NA Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 25272.9996 4582.895 8038.0988 8038.0988 23640.4802 11468.2597 4202.7255 1944.9327 54019.8252 377527391 arsc Metal Homeostasis Arsenic Detoxification Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 13037.0586 2393.7882 3484.761 3484.761 1663.7536 2533.3023 9281.6804 296819231 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 7500.2447 4443.1595 4044.2375 2951.806 99544.0281 3812.78 4754.6341 8309.7888 6662.9666 6662.9666 3180.9724 5496.7537 6316.4945 2781.2223 7024.3872 3443.5874 9384.8703 2354.0077 5011.96 13898.0388 306569760 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. OP2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 132714.4613 6290.1976 315416965 rgl Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8324.9626 377560400 pcpe Organic Remediation Herbicides related compound NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 1199122.9707 2488.1866 2597.1532 3001.2202 3843.6731 2232.049 14998.0965 3405.0757 4493.3538 4456.1653 5946.887 5028.5958 10578.8939 4501.9313 6686.8019 2011.1972 10781.9627 3336.694 2256.843 6781.2386 304393644 linc Organic Remediation Pesticides related compound NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 5190.3222 49367.3705 79468.0682 4453.9814 5418.4744 2546.2036 3600.4355 18652.5875 5130.5825 1888.0121 385232871 ppx Phosphorus Polyphosphate degradation NA Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 5027.833 189188556 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4837.3115 5491.8039 2164.9908 1919.0354 2814.8294 6503.7198 5703.6727 4403.6531 5237.4295 2206.1132 2910.4367 3597.1858 4735.4404 4727.085 336105682 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 5513.0487 7843.5458 9985.6512 3533.2161 2468.5063 2838.2525 3196.0505 302525.6745 4179.8622 5646.6132 6749.6363 6749.6363 8071.2333 6728.4953 5997.8887 4524.5311 6172.6538 2381.1803 16753.9128 3863.2553 8912.4022 5617.5647 4295.4159 3661.8038 180282.7958 197285564 dmsa Organic Remediation Others NA Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 120280.0215 2768.0071 3028.68 2483.9552 2483.9552 18569.5399 6365.717 10746.0123 3209.353 70251.0472 5544.6169 6330.3746 2207.6752 398350582 dehh109 Organic Remediation Chlorinated solvents NA Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5371.8073 92344.4735 8124.8177 5504.4031 15965451 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 4253.3123 4882.3978 9303.2322 2865.9455 5866.8626 5440.0879 5285.491 6786.3597 4692.4954 187964.1265 7047.391 5697.9176 2378.4506 2378.4506 3144.5044 9394.8874 7567.9726 4955.5168 9165.1743 7286.6077 2926.0811 4150.6534 9713.5491 5901.5671 57618.5772 8458.7903 12329.1469 9022.0359 5108.6343 25159.5618 3578.4481 6637.9034 298551087 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aurantiacus superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 64034.5917 3959.8937 256727622 phenol_oxidase Carbon Cycling Carbon degradation Lignin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 229249.5765 8804.8336 3009.493 3009.493 344198424 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 11240.6893 5897.9484 19900.6743 3496.4276 2964.3969 30893.2417 4986.0751 6104.0472 4033.1693 307217075 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 48175.4896 20557.2867 42999.6625 16512.8523 4750.1659 5182.4132 6470.0772 11652.3832 4783.6749 2165.3152 2165.3152 11937.4584 6999.1778 4737.9615 5313.9019 9759.6458 5109.634 6854.7592 9280.4029 12311.106 6597.949 7732.9561 2479.4031 5313.1288 4256.3684 8105.6323 157011638 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 21077.9944 4563.4206 3714.4456 71172.9924 3777.6619 30838.2813 6284.6842 257856.5413 2988.6706 17116.3874 3337.1387 35510.1969 4459.8791 4917.086 299800791 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 7188.6213 8257.4266 4162.8907 17066224 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus cornucopiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6373.6334 25479.9246 366054133 amyA Carbon Cycling Carbon degradation Starch Lactobacillus suebicus KCTC 3549 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus suebicus; 12668.97 6998.4048 8427.7862 8211.4059 9546.1458 2067.2372 254440258 tktA Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 17188.0521 7218.3475 42478.8096 13628.0376 2255.2246 16864.3867 7433.4164 17200.7867 40426.4047 29854.1347 305314.6004 115435.2916 21491.0776 46308.3631 20700.0228 20700.0228 4216.3005 19861.2445 17401.5143 6824.5104 5159.1054 3887.3027 8681.6762 15826.508 7695.8696 17279.9699 19591.4674 18105.0156 11439.8275 22647.059 12439.0776 5641.6395 320029729 ppk Phosphorus Polyphosphate synthesis NA Serratia symbiotica str. Tucson superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 13563.326 6787.9456 6687.0298 3428.4003 5747.0962 3773.4687 2533.1834 2533.1834 10474.0466 5555.6233 2837.8966 2279.3597 5780.6372 3870.8776 9048.3741 6757.7632 3174.6401 4290.221 2963.8426 2768.9953 309247962 terc Metal Homeostasis Tellurium Detoxification Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 5799.1564 237846175 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12623.3971 8527.395 3188.5978 85078541 cellobiase Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 89715.4714 17068.3736 22398.7354 4541.0415 5963.1266 61580.6173 11484.4817 5984.4525 1636.069 408376824 pcpe Organic Remediation Herbicides related compound NA Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 35568.4444 268317562 nosz Nitrogen Denitrification NA Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 74420.4987 11638.82005 2536.677 2250.177 3696.7211 4284.79925 56915.7107 5317.64435 2638.6746 2638.6746 3479.39105 8274.18945 4015.3518 4819.2456 8064.5666 6361.17385 3038.66015 9914.7972 5397.9371 8041.79565 2214.2077 3686.04725 3702.2839 218564178 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8009.5726 3219.1678 5147.4602 5679.7113 3837.3921 3954.3875 2800.5202 4631.1014 66801927 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 20918.313 6154.9827 42789.0997 15621.5202 4997.913 3747.8932 3748.9434 142899.3644 6885.6508 10242.571 20583.3018 7677.1591 7677.1591 8207.7898 9243.8971 3433.8569 13992.7328 2451.9505 13166.6694 14127.9728 10479.0068 4292.6103 5564.2938 329945639 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 170 str. F0386 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 170; 20160.3235 40855.4268 5522.7488 7122.365 4679.396 3133.4081 178609.6008 8725.4605 6553.2425 4815.7816 5018.846 5018.846 5988.0596 6787.142 4386.3457 7819.7658 4319.5226 3427.169 18146.8838 9107.4941 50079.0656 13739.1854 56399.8455 6057.4399 3898.0578 3095.8345 51620.912 224612976 dsrB Sulfur sulfite reduction NA Thermodesulfatator atlanticus superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 24564.2578 6982.6156 3381.7661 4906.5682 11566.7965 4000.6997 18417.9633 197117421 ppk Phosphorus Polyphosphate synthesis NA Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 22689.6635 107539.8741 9923.7886 4494.6376 4365.2517 4644.3219 5389.9604 2355.4872 4649.642 3505.7377 149209867 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9315.207 6294.7239 11773.0038 6359.6008 7538.0922 4434.8613 6801.7547 4338.3107 104795.5539 9845.3527 13533.9865 14515.9841 2959.7048 2959.7048 6612.7771 16599.004 7219.3397 13001.5249 10737.1882 12995.735 25113.1432 8052.0994 23154.0645 3785.7291 50210.9305 14420.3609 9393.4512 6028.3646 8025.5078 376372648 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16203.199 3102.6551 2328.5722 5681.8448 3703.1729 93348.6193 3903.4968 4175.0997 4175.0997 3274.1183 11165.0422 5891.5812 4462.8594 2698.7958 3666.069 6912.5714 2839.1731 10664.7853 7505.0735 7885.6071 6481.441 5868.0018 2935.9459 151302310 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobacterium anilini superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 4817.5279 31134.1457 30392.8019 11942.7696 3465.1236 6184.9255 4661.2081 61467.9681 4267.6895 5868.9744 5063.5295 9514.9572 9514.9572 6556.2536 14345.2885 5231.5896 8733.3791 8646.0513 3131.8194 4144.7084 8135.5837 5708.1084 53271.3942 5754.0867 8969.8056 2660.0862 3496.5438 14980.8294 2185.5161 7097.3309 295969332 gdh Nitrogen Ammonification NA Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 345614.3991 11067.9981 18231.8932 8655.2478 373944238 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 23835.5805 6621.6988 5031.6871 4900.2501 157147445 phenol_oxidase Carbon Cycling Carbon degradation Lignin Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 9376.1958 2440.4991 1854.2662 2263.2018 7212.6216 5824.2765 4795.6429 4106.5288 4106.5288 3550.8592 5215.0478 6007.9451 3613.835 6721.5739 2204.2264 7164.2507 2477.1088 4878.821 7543.5962 2578.1035 4359.5443 392526904 amyA Carbon Cycling Carbon degradation Starch Pelosinus fermentans JBW45 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 8427.2534 11760.6655 3500.2712 6074.6974 5761.7123 5761.7123 7325.9161 7008.2545 2487.1222 211905621 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6334.6767 7128.1091 5129.7549 2217.1177 4038.6462 2868.1812 3802.8737 4478.888 4821.2015 1840.4195 1840.4195 24884.0962 45768.086 5999.7026 295668799 protease_serine_fungi Carbon Cycling Carbon degradation protein Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 7785.169 6373.9549 8555.1677 2088.1993 4048.2939 15230.7344 7477.7289 65602.6604 4236.2362 3416.6653 3454.8139 4796.3216 5221.7624 6386.1163 5059.0341 2470.5781 6536.7237 1979.7382 323365396 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 9523.5364 1893.2755 363994038 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 616420.5944 10517.9507 371956779 amyA Carbon Cycling Carbon degradation Starch Prevotella micans F0438 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 444312.8263 3460.3961 2773.0294 2773.0294 4847.9927 5863.1881 3723.6679 54309376 endochitinase Carbon Cycling Carbon degradation Chitin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 403981.0092 5826.9654 3517.3054 4073.496 3917.7235 7988.3947 5821.5147 1911.1144 7069.5044 307772005 alkk Organic Remediation Others NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4686.4925 6861.5033 10238.2976 5689.7001 4624.7846 3919.1546 7623.3677 13405.7487 4351.8713 3746.1433 5944.2864 3544.9095 3544.9095 17115.7973 8027.4292 17117.9171 10584.6946 17351.0232 20029.0595 8793.932 9600.5231 3495.5203 15015.4544 5467.2711 11503.514 7105.7587 7283.0467 6255.2713 2198.9631 20951.4054 334125966 nirb Nitrogen Assimilatory N reduction NA Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 8719.8765 6272.1657 5226.0074 17309.8353 5068.4943 7564.4735 12703.5029 132171.9948 4973.4149 76900.9585 2841.1321 2841.1321 4884.3756 7640.5147 7443.6952 6641.6338 9833.4724 3499.4504 3510.5266 6730.073 6036.3099 14087.3174 7109.928 12148.0846 3590.6289 7886.6364 6129.2917 17675.5499 7942.1052 56675807 dsra Sulfur sulfite reduction NA Desulfotomaculum thermobenzoicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 5366.3827 8481.7159 3503.7535 2700.3242 2700.3242 7483.923 3081.2572 23775.3819 223893644 cysJ Sulfur Reduction NA bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 141362.6063 7502.3371 4162.564 2261.7356 2261.7356 3128.458 10233.1158 295982810 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 13894.0995 4220.9637 6641.2384 2997.6632 3619.2693 5488.2674 2668.6306 68837.9754 6289.9249 3579.2445 4703.1189 9606.0161 7644.413 42320.3989 10116.3754 9801.8403 3270.002 3800.9583 10757.0167 4783.7626 11237.8856 19157.7686 9586.3211 3565.2314 6021.438 4649.1075 3997.8407 11148.6092 169594612 pme_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7441.2223 7572.55 4524.582 5413.6812 7710.2011 4279.9783 2373.0435 9901 6508.2303 6848.1564 4105.3539 3769.1663 2593.0217 361063160 pme Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 10422.8132 7648481 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. Q36 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 11700.4827 4509.266 29966.7147 8034.9515 3393.0077 9755.4745 6957.8433 61829.0293 10432.5635 8056.0332 10009.3629 4318.9013 4318.9013 7557.577 6762.2498 6736.5293 14961.5599 8948.2244 7050.6554 3689.1335 11427.7011 5517.7058 23696.9204 10761.8194 12265.9345 5398.899 4602.3153 9864.0817 2709.0057 43332.9889 256833442 mannanase Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 12851.4635 10131.4863 8241.8857 3711.788 2840.7771 8869.7227 4801.1257 4571.8816 4259.483 3691.9213 3691.9213 3585.7182 8028.9662 4360.1774 4192.2932 5004.7067 2948.5864 7132.2298 7905.1044 7004.084 2543.1581 3933.6474 4312.1605 251797192 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11425.4394 10879.9798 3754.8063 36014.9564 18919.4781 4305.6336 2337.4404 77183.6426 5839.818 6860.6711 4616.8089 1997.6766 1997.6766 3316.8869 4891.2123 7654.1878 9260.3811 6717.7004 2884.4612 6616.067 3569.1606 9062.4405 4439.1729 6033.9309 2230.6634 2911.9645 3963.1777 383463596 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 8827.4227 9496.1787 5450.0917 6763.5347 17417.4725 22591.7821 20034.307 2724.3936 53706.4855 6041.1143 43639.9052 13209.1774 5759.1131 5759.1131 77760.3329 4560.3035 5068.8368 17130.8061 5444.796 5074.5744 5370.0834 6841.9701 13354.3518 9071.9528 220719011 ppx Phosphorus Polyphosphate degradation NA Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 19337.7799 596331.3441 3834.9904 9898.965 2792.4604 198261561 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 14898.4764 125974082 nifh Nitrogen Nitrogen fixation NA Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 10760.6624 114565963 nifh Nitrogen Nitrogen fixation NA Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 9574.1753 1697.4924 4054.8062 9985.7648 161786227 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 5657.4857 29293.5623 4318.5089 3335.2641 4892.2448 69287553 ara Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 7221.8123 89355.8024 7708.6091 1935.8439 4022.3827 9317.6224 55548.1899 5653.9789 3020.0324 3020.0324 7441.8813 27284.8706 4145.8613 6215.7755 43640.8161 15460.6339 6663.4994 23771.9604 7503.0052 6412.7171 9578.0714 3796.2108 4671.1952 11206.749 299135377 nosz Nitrogen Denitrification NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 8070.3005 15780.0648 14209.532 4936.8115 11774.9614 7956.1439 5332.5379 13345.2427 5873.7973 16988.4912 4780.8321 4780.8321 6235.5404 9184.167 8554.6642 79203.2188 5359.3304 3302.6239 4695.1224 35262.9948 5160.7294 17158.2346 16654.4197 11233.6445 3121.739 7948.938 8458.1702 2506.9679 6518.2901 146453242 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 13383.3295 50727102 chitinase Carbon Cycling Carbon degradation Chitin Microbulbifer hydrolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 160379.8051 4425.5603 12461.125 3301.6284 2678.3374 12815.1344 3631.1019 291416664 cda Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 237192.8017 54889.7529 134068.3224 44416.3128 59517.9849 33757.7486 31095.0229 220909484 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 10663.02 3346.0445 6635.3362 110632156 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 41184.1623 6703.4961 8385.8089 7163.0998 375267058 phenol_oxidase Carbon Cycling Carbon degradation Lignin Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4587.3692 294677918 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 5886.0996 4521.1104 2704.6015 3297.5917 4085.6456 32636.6992 3985.8886 62510.946 8568.0814 3249.8537 5511.4039 10242.3798 10242.3798 63193.2317 5733.3129 4392.1538 3904.8101 4878.9312 12972.7292 10890.5001 16590.9903 6683.4336 9580.9785 3017.0417 3603.7816 4538.6037 2193.0312 4127.8355 335339880 ara Carbon Cycling Carbon degradation Hemicellulose Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 9365.9214 11202.3243 3742.7362 31695.4084 17043.3952 4271.2564 2113.8702 2113.8702 4426.0212 359400757 xylc Organic Remediation Aromatics BTEX and related aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 4606.7024 2687.795 16168.6329 4497.5644 107637.6364 3538.5952 183766.2336 7624.204 6442.2363 35920.8469 35920.8469 5543.1802 13136.8322 6585.6246 31989.2086 10220.5684 3229.0872 3246.1776 6677.4285 8518.0464 17065.0474 4643.0949 22591.7631 4729.9841 10654.6276 4794.51 7172.1956 6842.8402 387820848 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis B420 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8365.4258 9186.8724 2405.9209 2006.5954 7583.3013 6024.9383 3199.2004 61744.5931 21590.7362 4185.3622 4233.6318 4233.6318 3526.5489 5225.2049 8038.5709 6660.9764 3078.6548 7434.3184 9999.2258 5103.6707 3540.0874 4399.0281 1984.7901 5140.69 145223801 merb Metal Homeostasis Mercury Detoxification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 19300.7027 2420.3909 1922.891 1922.891 315647229 b_lactamase Virulence Antibiotic resistance Degradation Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 7568.6862 2188.8378 5525.0237 5460.8958 9648.6816 4759.1382 2091.3549 74384.1497 6827.8054 317968299 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 263830.5399 10949.5379 20983.8646 9996.6312 3103.6307 8925.3127 195364309 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Propionibacteriaceae bacterium MOB600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae; 8958.5368 11199.6809 8405.6603 4701.7227 6093.1505 2773.6362 2773.6362 7219.582 5303.2878 13123.9865 6193.5877 4056.7108 6441.4214 77378616 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10989.5529 12654.0307 20257.4123 8844.2576 11430.1526 6449.9613 2485.6116 62386.4167 6013.5739 4060.1694 12529.5204 3618.0245 3618.0245 9691.6086 6614.2578 4893.9505 2941.4005 3643.2299 393758284 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 5002.5861 6214.3864 26454.7538 5020.2408 2421.6299 2491.9727 3087.4359 18119.6307 6046.2992 54941.7771 10059.9896 4869.1667 3937.529 3937.529 8022.5777 3515.8629 10863.5219 6632.8187 13902.3821 7794.3284 2222.5939 16828.1772 4975.1829 9961.3797 5676.2479 11872.11 19890.7264 358754723 cellobiase Carbon Cycling Carbon degradation Cellulose Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 5273.1424 12719.5824 6257.9416 6257.9416 219863644 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 12262.7324 14536.6144 23663.1469 339888215 norb Nitrogen Denitrification NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 619000.2109 55405.2352 8480.9429 6778.8088 3641.9029 4011.0803 17163.2117 4891.4607 99030607 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9056.1443 12217.28095 4949.959 20115.0554 11542.5091 6060.1248 10008.8479 8113.3325 168740.1861 14021.51715 13785.4508 15087.867 17560.807 12301.8906 20608.156 10739.82975 12449.53675 5298.53815 9349.25605 15773.1679 6194.329 9158.7398 6634.8715 6141.10765 11573.7614 134078654 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6040.204 5154.6978 2957.9439 2957.9439 6231.7433 4467.1262 5882.3139 4628.4743 4375.5362 379065403 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 331275.9458 54691.8215 38225.5955 5824.6253 63505.5699 59352.5718 57182.89965 30427.7195 46403.707 45587.8939 58974.2897 307725.7812 42522.138 49293.8138 32832.16055 39506.2245 47635.2852 48236.1939 26454.6826 61599.0096 32618.2045 60907.5167 206676443 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 14128.3822 2872.6433 229590662 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5827.9075 3728.2413 4068.1217 5581.2317 94972016 arsc Metal Homeostasis Arsenic Detoxification Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 868015.7255 42321.447 10074.7171 5010.1553 2124.3007 1671.8741 325919769 cmci Organic Remediation Aromatics Other aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 8069.6821 3086.4378 1743.9802 110621926 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella arvoryzae; 7220.8709 3984.1309 307776646 mannanase Carbon Cycling Carbon degradation Hemicellulose Trichoderma longibrachiatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 5412.1879 3937.5441 332377218 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 36022.3029 6374.3635 4004.3963 9916.3582 87165.238 5398.7704 15595.1385 2626.864 8627.2502 5477.5732 5336.7525 3357.3733 2874.807 5884.838 239579681 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 947020.0193 323526269 PRI Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13540.7324 37914.5294 3593.285 107736.4374 297377221 gdh Nitrogen Ammonification NA Waddlia chondrophila WSU 86-1044 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Waddliaceae;genus:Waddlia;species:Waddlia chondrophila; 5780.2378 34525.5962 592986.801 4199.8538 4166.4369 8535.8306 4004.8267 111021480 atzb Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6225.2861 3051.8452 2381.821 2345.4761 3152.6763 3696.7857 85511.811 6049.7278 4331.0122 4002.7053 8201.6979 4888.1054 7637.8144 7819.5685 4727.9477 3515.0447 4169.0381 7626.0567 2549.1901 10217.9292 7692.2286 8194.9464 3732.6002 4927.6902 9224.7352 4139.9183 13504.1678 365425268 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5379.8812 5913.1236 4505.7862 3984.8869 3814.7112 2477.2265 4473.3881 8716.0639 5374.1314 9269.8553 3916.4481 5741.6915 4015.5868 4306.9769 4749.6584 7356.9693 67527312 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5722.3367 5320.1202 10389.4814 23143.514 6517.5164 6517.5164 9090.7139 7070.2792 2431.8531 5170.5163 90104693 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 50698.8345 14919.1352 4447.204 397887563 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Q2-87 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6455.1957 3526.9299 4253.4226 186786.9027 11726.3575 4010.3584 7553.7666 5980.7426 148656691 catechol_b Organic Remediation Aromatics Other aromatics Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 23900.8048 28261.6772 2602.0027 4070.533 10820.6566 6787.9675 63663.1641 7729.2933 2357.1411 2357.1411 6851.5397 4658.8064 471572.7904 5000.8253 8644.5513 9815.5026 15741.1671 2696.1266 2348.4869 15903.908 317506445 terc Metal Homeostasis Tellurium Detoxification Segniliparus rugosus ATCC BAA-974 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rugosus; 36648.0315 5957.4777 3195.5688 7520.1697 27260.6175 27260.6175 4628.5679 3527.2857 2815.4984 7109.7345 5008.6491 5995.4494 2031.69 7153.5502 4150.5216 126706903 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 4955.5108 7062.3903 12406.8887 2750.6739 8482.0845 3767.171 2925.8253 67863.4815 4451.4103 23113.0105 1931.1198 16069.5383 2593.3302 291422641 xyla Carbon Cycling Carbon degradation Hemicellulose Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 12830.0051 4842.1363 2946.6215 2201.3148 3507.5164 5075.5963 88334.4448 6618.3405 2364.6542 2364.6542 4522.6392 6789.2566 4950.8122 4798.2344 4941.7429 4830.6428 2343.6977 7046.4127 3453.0009 9609.5499 6822.1677 2192.3343 3799.4458 2383.92 124257901 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. HDN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 24583.4005 3998.4305 2389.7539 2992.2602 5552.1497 2360.526 3667.9551 4404.2319 4404.2319 2975.865 6669.286 3698.5299 8383.8379 5267.1337 3614.6323 8519.663 7905.0611 3074.7881 3222.9492 6383.2088 2282.6551 20861.7267 90020931 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 51669.2157 6593.061 6711.799 345111974 vgb Virulence Antibiotic resistance Degradation Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 855668.2052 178719.7805 9285.647 20209.9912 2739.9351 26842.263 2666.6477 3755.3363 17673.2527 323385281 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6307.1974 7798.9569 10454.8522 6501.9066 7777.021 3164.0222 4263.6641 7791.4894 8585.0457 95288.623 7617.477 8137.5815 5444.4996 28912.0393 28912.0393 4183.0063 9227.0841 5580.828 6642.3644 8811.785 9811.9077 3650.3261 4645.7061 14401.6495 4105.3173 9905.1088 15955.8923 13493.4026 4661.0563 5398.2698 5788.9149 6284.4884 211586398 pcpe Organic Remediation Herbicides related compound NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 34163.3921 2209.9013 6319.7813 57625.8985 24979.6046 24979.6046 3296.4606 12687.9638 4714.3647 5979.6861 2925.4371 5411.4008 6282.4376 7772.4276 4146.0509 4496.3371 13713.5542 3420.407 7071.8653 222053901 dsra Sulfur sulfite reduction NA Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter daltonii; 395888.2411 2394.947 2010.645 2505.5529 3918.9159 3480.1198 9098.2039 2577.6085 2577.6085 3537.5369 2372.8479 2763.0231 2353.5387 11496.7503 2103.6277 4997.9056 5153.3156 11992133 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halobacterium salinarum superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 89840.1378 4024.3602 9983.7104 3765.6101 6049281 nitro Organic Remediation Others NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7350.4441 73865.4644 4145.6579 5954.1639 7076.5206 6573.871 5373.7248 12758.3164 12758.3164 122052.4112 18878.8318 5874.3191 5057.9874 6484.2002 5189.5693 5849.6114 9270.1266 320159455 arsc Metal Homeostasis Arsenic Detoxification Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 1539019.986 1380802.8483 18533.1996 4637.4403 123329.9528 3858.0076 59718.6545 4573.1953 4657.6032 2479.4607 2479.4607 5931.7072 6855.8902 2079.6764 20977656 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8167.4765 5559.1289 5095.2964 308163048 hsp90_Fornicata Other Phylogenetic NA Giardia lamblia P15 superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia;species:Giardia intestinalis; 7713.2298 359408045 urec Nitrogen Ammonification NA SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 14586.8421 3275.5521 2580.773 3753.0483 2422.7606 6601.4866 5213.2649 4165.2107 4165.2107 3091.3139 4971.226 5853.3547 2525.3375 4108.9062 7571.6713 1957.807 8218.0699 5391.3267 3378.442 7441.0114 20477.9758 578916.1242 15607118 sqr Sulfur Sulfide Oxidation NA Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 5793.7299 3082.2049 3095.7412 4133.739 87957.0108 4375.6996 6834.447 4292.6482 7583.0484 4115.3199 2457.6628 3145.0738 2265.8884 365969863 vana Carbon Cycling Carbon degradation Vanillin/Lignin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 153388.1261 6164.654 7945.2421 229823775 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Catonella morbi ATCC 51271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Catonella;species:Catonella morbi; 40218.7581 2464.6338 8069.713 5754.4736 3776.7176 74879.3341 5332.4207 3663.2544 8211.3781 8211.3781 35056.2003 7567.6257 3274.2235 4293.8937 9778.6616 4564.8131 4208.8814 8327.4542 3472.0107 8758.2346 4613.7974 36216.7394 4495.5394 23683.5938 7064.7717 5310.0362 4889.5843 115399748 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 23610.0032 6261.9787 25702.0681 14996.7715 3743.6717 12633.5262 111024864 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 122842.9318 2905.5801 13756.6042 8466.4106 357398940 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 24324.2072 38240.0701 6587.7414 6162.3934 3296.1943 3296.1943 5314.3436 6343.0771 2410.9473 398803397 poba Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 7031.1256 2115.0962 3306.6435 3560.5362 4561.5633 2582.4083 2104.7659 1613.5818 2882.677 3080.1707 4952.5949 113868404 ppx Phosphorus Polyphosphate degradation NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5122.6965 6245.2671 2774.5282 7015.046 3842.5776 2170.1327 1766.0263 330686371 nirb Nitrogen Assimilatory N reduction NA Staphylococcus epidermidis VCU121 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 11848.7064 4062.0722 2705.8146 2571.326 4439.1886 3706.7205 89014.2747 4898.5408 4043.161 2926.2295 7810.8618 5238.486 4985.0984 5312.713 6162.8193 2022.3485 2485.9325 10651.1008 3025.538 9676.5177 5866.1371 3655.5199 3643.0284 3649.2296 3058.2223 6071.9977 76056981 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 100294.1178 5126.9016 10315.2959 6403.8446 5699.8613 6597.7567 4203.2222 3811.3373 7945.3823 2668.8852 5582.1884 6018.5827 5851.8525 1778.5989 4417.0124 349920.1182 30269563 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 15740.2022 2148.9132 2837.8549 11908.5496 2624.9814 9921.7872 2633.3525 4635.2249 220906104 arsc Metal Homeostasis Arsenic Detoxification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7162.179 2896.2528 3170.3237 3118.203 73972.031 2733.8911 6567.4773 3669.0406 6027.4424 5301.9295 4387.7343 5945.689 2634.6549 2581.2535 3193.9661 5283.9015 393763301 amyA Carbon Cycling Carbon degradation Starch Alishewanella agri BL06 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 193971.9997 3577.3345 10652.1459 6781.9316 2403.1259 5058.9572 7341.1285 4034.6329 6546.7206 5000.8603 10255.8122 3344.7036 6687.1333 12012.3376 4073.0534 7207.3106 3615.4648 4404.2462 4193.2942 73749159 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 155333.9911 5862.302 12539.3704 13812.6812 6707.4147 6645.6806 7557.9229 115401062 tfda Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 13590.7608 134094260 SoxC Sulfur Sulfur Oxidation NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 5024.9975 2215.3191 2215.3191 11320.8298 160704787 endochitinase Carbon Cycling Carbon degradation Chitin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 385210.9137 2654.7252 2654.7252 6793.8229 332977076 trza Organic Remediation Herbicides related compound NA Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 15145.7061 9892.2894 6801.988 2824.2387 2693.5305 3104.15525 3510.06295 4922.46415 3623.53055 76000.57385 4875.6296 13402.3791 13402.3791 16319.1035 7523.26795 5978.17485 8989.2348 6685.5819 6362.7639 2642.5388 3087.91305 7052.61365 2343.0946 14823.2522 5770.55665 7601.3499 2735.7604 3990.94785 4381.0457 3196.42055 4768.7866 239995690 alginase Carbon Cycling Carbon degradation Alginate Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6042.4823 3701.9364 112463739 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5380.715 12979.0103 12979.0103 13049.6791 330404139 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4972.1879 3983.1848 3983.1848 3498.1554 14980.7532 4562.8665 2916.3108 4068.7078 119671142 catechol_b Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 567657.535 31739.5689 4481.2656 375099975 bend Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 39073.2991 17679.1603 6325.8994 3662.4029 5695.8081 14912.4484 4707.6902 5977.3169 4220.6253 4220.6253 3576.3791 8812.103 12530.12 5215.3278 3345.9599 2717.5152 6468.319 3739.9058 9039.2394 8175.5476 5386.3065 4406.6057 5471.2684 4798.1081 4593.2088 345009988 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 12701.9737 13861.7192 14444.3434 11321.6903 2459.6845 66572.2305 4555.0159 1790.049 1790.049 5143.2127 3128.6107 2747.6152 5159.1358 1967.5374 8527.6939 4938.4416 2757.4031 2460.2939 3060.482 217327.7818 87122348 mer Metal Homeostasis Mercury Detoxification Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8171.1865 4506.1879 75234470 urec Nitrogen Ammonification NA Escherichia coli E110019 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 24784.4751 7340.0379 4314.147 3733.3084 15836.0529 84779014 cysJ Sulfur Reduction NA Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 5539.0997 2903.2018 6406.7524 2988.2101 4487.7494 2007.8923 3309.5643 115400451 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 14112.4749 35044.3093 4582.242 7919.3476 16839.3094 74053753 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. 1YBTEX1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 29069.716 3888.1363 35601.5233 4091.0402 5535.326 72873.2054 5780.7261 4026.5331 5371.1992 3563.5911 6333.1869 9625.2996 5825.7486 2183.1687 5074.2061 13393.8592 3449.1202 60251.5901 4754.7599 7123.2392 2558.0209 4685.5201 6462.6672 5246.4141 373894241 terc Metal Homeostasis Tellurium Detoxification Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 907092.359 9259.9095 5489.498 26646.7342 10334.7028 42694.7732 5232.7519 11232.4363 3070.005 3070.005 15319.041 12945.0762 101639.3977 25663.5465 2679.8806 17479.2808 15230.0607 10541.6439 3566.484 5801.9138 4070.3644 3336.9362 151574904 atzb Organic Remediation Herbicides related compound NA Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 9962.493 3912.3241 5035.5467 3761.0818 3761.0818 2687.444 3760.5313 3380.8409 91687557 cysJ Sulfur Reduction NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 12315.9255 381375.5992 6113.0998 2458.2748 6893.3118 4198.078 7722.3627 10335.2849 5631.4607 61780.0348 5206.0624 3686.6639 3769.7416 2219.9252 2219.9252 7504.6108 7305.1807 4965.005 2587.1529 10679.1553 6010.6723 4188.3645 31259.2132 4767.3627 19309740 phenol_oxidase Carbon Cycling Carbon degradation Lignin Gaeumannomyces graminis var. graminis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Gaeumannomyces;species:Gaeumannomyces graminis; 8759.9784 3962.8341 7244.0212 6631.1549 4434.1481 669873.9299 4156.2189 3931.2259 2330.6246 2330.6246 11545.4336 3512.3099 11224.6602 4526.0821 4911.0087 6436.4085 6098.8823 9699.6183 7351.521 5623.5624 6084.4736 1698.8128 3579.5316 4374.8319 2390.5715 44671.141 194565418 exochitinase Carbon Cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 7516.1148 8339.034 14950.5905 7002.4628 3880.8407 2419.5481 10899.2932 9046.3819 2594.3936 161854.87 6313.0378 4305.4635 4301.3611 4301.3611 27372.4348 18633.4505 11545.1884 3596.7553 3598.7776 8174.7356 15674.0247 6053.521 7172.2668 3139.0962 4448.5693 3567.0789 2942.0341 99030513 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 15509.6792 8190.6848 3662.9823 3042.8332 5245.9504 2216.1518 58166.85 3585.4453 7443.5105 3333.1149 6769.8747 5236.3248 2315.1198 7557.5453 2662.5238 6920.9828 2822.8819 3322.6749 2040.7582 5894.1599 403745817 amie Organic Remediation Aromatics Other aromatics Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 10184.7142 2917.2319 3813.9129 1792.6049 19888076 nifh Nitrogen Nitrogen fixation NA Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 22554.0542 2439.6033 4469.8705 4678.3424 83190.7483 3998.4978 3551.2966 3551.2966 2849.6975 5248.7912 3448.5073 6400.3966 7454.4425 3065.773 5652.8699 338799977 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 14806.8545 276361.8993 6419.2933 283779958 amyA Carbon Cycling Carbon degradation Starch Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 84533.994 82409884 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 74349.7982 15143.6967 3538.793 4657.218 6069.7344 4208.6702 10099.9968 86976.3663 5474.8403 5474.8403 6936.6539 6651.5693 4108.9336 3756.8517 2444.6038 10374.5004 4503.5921 10301.9178 3017.1953 2998.5337 261856184 amie Organic Remediation Aromatics Other aromatics Halothiobacillus neapolitanus c2 5239.6841 190149368 nrfa Nitrogen Dissimilatory N reduction NA Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 6252.2884 4677.0511 3256.3165 5536.0963 5531.441 2588.215 77410.8728 4359.3002 4674.3563 11683.5631 4026.7207 4026.7207 2624.5985 10295.5881 6771.4164 496019.6111 5794.2382 6577.704 2183.6087 7009.7886 5054.1275 4003.4631 15325.8175 8533.2539 7750.4983 2368.5071 4951.7718 4127.7289 2913.6256 7911.0043 254950829 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 11051.4221 9585.4742 256641769 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acetobacter pasteurianus IFO 3283-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 9568.3666 50203.5807 53689.0153 4073.0643 6055.392 5824.6712 80273.875 24155.7206 12264.2653 7208.3296 10113.0946 10113.0946 6736.4652 24819.9638 11697.2323 10935.5893 25485.8691 5569.5334 9131.4227 6307.5826 137683.7961 61439.3883 15152.5186 3020.5034 5281.9943 13485.6275 3060.3537 16754881 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 57291.132 119479867 cellobiase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 18030.6974 16323.0424 2657.7331 2138.8711 3588.7216 4615.3394 68316.8515 5808.1989 5466.0805 3033.0836 3033.0836 9822.3449 14119.9863 3822.6141 45718.5108 14464.5648 5874.0545 2678.3444 2103.1972 6534.0186 5777.7383 11661.4022 3868.7614 6501.1682 3220.7592 5527.1763 5104.6981 2645.9188 7683.6543 161380279 dmdA Sulfur DMSP degradation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7452.1664 64450.4708 304343382 ppx Phosphorus Polyphosphate degradation NA Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 7035.7084 38882.16 3332.9509 76183.0149 5777.732 5581.0176 4701.6862 2283.4358 2359.2537 10854.5414 4287.928 4791.7843 2760.5997 3176.7052 18518.1553 220909871 tktA Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 16280.1415 2850.2271 4027.7612 5967.1615 73102.4701 2747.9997 2747.9997 4924.4589 8054.8136 5988.4672 5235.7938 7863.5924 16366.9341 5965.575 2026.2042 5412.0532 284017507 mannanase Carbon Cycling Carbon degradation Hemicellulose Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 4723.0894 2909.612 10010.1598 5209.2225 5306.1714 255299079 amyA Carbon Cycling Carbon degradation Starch Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 5271.8691 22715.3268 2830.9912 81426.1154 4343.5274 4606.8736 179455.6227 4950.6855 5127.0378 6535.4575 5703.8526 5703.8526 15312.7065 7735.9974 7925.3288 3293.9139 34903.2228 2829.4363 13790.3374 22027.6136 20433.238 5017.744 3556.3088 5754.6296 3136.955 383509413 terc Metal Homeostasis Tellurium Detoxification Thermus thermophilus JL-18 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 5463.2929 12414.5482 1875.7919 2690.9555 485195.5639 5418.8144 2786.599 4757.5328 5404.8587 6044.1208 14667.4814 2779.6982 189201916 endochitinase Carbon Cycling Carbon degradation Chitin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 11020.4614 85827472 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 42296.6216 15150.8747 6455.9394 2715.8576 302407315 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 9482.4867 298405446 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 28304.8715 59365.596 4226.9083 4929.1868 330721250 mer Metal Homeostasis Mercury Detoxification gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9200.1422 9019.3875 13178.2209 14292.2598 2778.2904 4178.5117 18491.6689 8423.9067 6136.3121 6570.5546 2643.5612 8131.8243 3322.4231 18928.7857 239586544 bph Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 7688.1153 14763.5302 3893.1966 15221.8253 160933124 ppk Phosphorus Polyphosphate synthesis NA Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 4975.7992 76539.0458 3879.4321 296924574 arsm Metal Homeostasis Arsenic Detoxification Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 17488.1359 40482.8539 59811.0659 2302.9391 7288.7486 4566.7639 94459.0925 6966.8317 12549.1661 3389.9137 3389.9137 4548.246 4872.0919 4546.5448 7226.0467 4619.3521 6836.2128 9898.4538 7012.8716 11113.47 4101.194 6310.1751 4272.3316 4365.351 4719.19 10060.5696 395652041 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 6624.1818 9417.8729 4501.1343 16034.4263 8876.3426 64809.7544 7081.6309 18237.095 10893.6342 10893.6342 6675.2777 2217.4068 3987.0637 2495.4506 5950.7624 9815.7952 1667.6647 4010.9313 78093588 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7573.7136 4226.4683 5482.5577 5619.419 15926.4655 1978.6088 10752.1845 4265.2266 1776.6553 3001.0131 5630.4202 315638429 ppx Phosphorus Polyphosphate degradation NA Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 4365.4218 4740.7352 9195.4472 3945.1056 7031.5264 6663.3371 5399.1895 1859.9741 3519.4301 5174.6799 74095511 b_lactamase Virulence Antibiotic resistance Degradation Cupriavidus pauculus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 10796.163 2702.7056 2786.5329 2327.7555 5701.8447 2046.7546 4639.7906 312275494 terc Metal Homeostasis Tellurium Detoxification Lactobacillus amylovorus GRL 1112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylovorus; 75711.1774 10439.7344 78167698 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 5805.0309 4303.6241 2700.1794 18957.7353 8737.4258 3829.6956 3578.2379 6054.2759 3998.8331 2274.7575 7153.4363 2218.5066 3154.6921 319750870 amyA Carbon Cycling Carbon degradation Starch Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 5701.08 5333.8828 134958.8431 3637.9527 3139.1948 6117.0373 3806.4414 4166.1166 8593.7164 2875.3526 9406.6937 4252.4146 5011.0548 2702.6631 2984.1371 2081.5085 6946.1306 254512719 cmci Organic Remediation Aromatics Other aromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4993.0782 7163.7829 3695.9316 8494.1765 7417.0632 2591.9804 4995.9752 384128347 amyA Carbon Cycling Carbon degradation Starch Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 331916.5649 19296.8 2914.0122 295680483 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10896.4151 304654567 mmox Carbon Cycling Methane Methane oxidation Methyloferula stellata superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methyloferula; 8538.9887 57721.6314 1982.6273 31333.5732 390453189 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 202733.154 2288.7505 15586.5555 1925022.4824 5034.874 10359.3469 22041.9051 3779.3127 10672.2621 4873.2826 3303.4269 46115180 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 195541.3508 4257.4244 9080.9947 2728.9089 1925.2833 363712475 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 5912.5033 2739.0367 12070.327 6805.4857 5294.6968 5952.9637 148843592 mer Metal Homeostasis Mercury Detoxification Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 5377.9331 6572.6377 12950.9352 3701.683 3283.0412 4044.0636 4653.4454 8702.1354 2606.0452 115273.3928 10880.7775 29725.4648 5473.5005 2553.8564 2553.8564 5276.8577 12011.6888 5735.2116 6586.3572 6054.7849 5215.8215 5107.4431 6923.8132 12334.5471 3611.235 27283.5462 6915.285 6101.2292 2658.5623 7960.2464 13828.904 4891.3588 8481.1444 126035171 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6453.5042 5735.7653 8697.2921 5330.5013 6318.2022 5023.0188 2494.1681 7033.6167 19148.744 6153.7892 2907.8685 23027.4192 7759.6656 385278947 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 245575.2567 54018030 narg Nitrogen Denitrification NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7441.3605 9297.3714 2676.0146 15026.0321 8721.0977 3042.4153 108627.7489 2254.8085 2254.8085 2795.1404 6561.9583 5891.335 3700.6947 5612.4039 2711.7762 11699.5462 118151841 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 16597.3528 10707.5921 12547.4127 4619.6862 4154.7726 4717.2504 3103.7601 78956.5098 4920.9685 4157.4187 4157.4187 3191.1354 11546.2626 5234.8342 12562.955 28411.795 2485.962 2735.9956 6135.2411 2232.919 11481.1876 6817.5317 7157.267 2306.8282 3099.0079 3849.9523 3038.835 6757.8421 262079045 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 27774.9533 10796.2556 3195.253 5302.3819 3079.7601 10774.2412 4182.9846 4944.663 4944.663 6006.1406 3743.9883 3410.2008 7944.5985 5992.3375 6196.4323 33240290 FBPase Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 5296.2586 3467.162 146409439 nosz Nitrogen Denitrification NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5829.8678 2590.7131 3715.5148 4618.5841 8509.1302 4174.0336 5872.0771 3627.7952 3627.7952 4609.1579 2369.6857 9560.8027 5769.6111 6427.876 2350.5868 2749.3651 3300.3552 2225.9822 6186.3835 326434970 mer Metal Homeostasis Mercury Detoxification Salpingoeca sp. ATCC 50818 superkingdom:Eukaryota;order:Choanoflagellida;family:Salpingoecidae;genus:Salpingoeca; 11371.6909 88810434 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 16597.7627 8134.3594 3449.8614 83500.6414 2082.6781 4809.7424 164456174 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 41508.8485 4237.0973 30269577 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 14706.6247 86753.267 18018.4602 8722.4513 21884.6823 14544.5919 74547.0204 14961.4584 14961.4584 50535.5977 23197.7186 11313.16255 32731.4811 82699.3373 29213.59605 30602.3448 11940.1482 119775049 arsc Metal Homeostasis Arsenic Detoxification Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7726.9234 5515.0043 7846.8249 34962.457 4753.4288 2778.9148 12765.4549 5860.2372 3763.6017 379044854 ppx Phosphorus Polyphosphate degradation NA Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 493581.7194 10901.5341 6296.3531 14857.4756 14857.4756 58680.8495 39007.3108 225420060 ppk Phosphorus Polyphosphate synthesis NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 8365.0547 7173.1762 2706.8985 2706.8985 4560.2649 1949.56 302686210 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 320612.6168 575318.3251 31806.2642 35210.0995 53533.1733 41182.3367 49182.1747 45296.2867 61756.693 96077.6205 389250.9339 73201.8787 26360.8713 29606.6786 98908.2025 132215.4036 33846.125 383790002 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 24243.2928 7521.8615 9371.0612 4778.8684 6486.4863 8456.8217 19853.2167 10424.191 3909.3501 2534.2999 11350.7718 4287.9875 6136.8172 3036.6911 85830048 RgaE Carbon Cycling Carbon degradation Pectin Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 18755.0255 1885.5164 88797055 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 952362.5901 73144.7946 13045.5859 4078.5404 8515.6964 5322.0083 2158.6493 372476876 mannanase Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 160078.8288 4788.4904 3827.8519 1018593.8156 5625.2171 3920.449 10455.7792 82523811 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured Chloroflexi bacterium superkingdom:Bacteria;phylum:Chloroflexi; 9430.9137 4652.9021 109452455 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4663.1361 4509.5223 3212.9593 4618.911 110095.7971 5571.9614 3957.7732 12066.5749 7422.2321 2601.1871 6778.9453 59845.4241 3112.5147 2508.0294 1949.7099 4661.4629 46199672 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 11020.9743 7983.4123 4340.4868 2068.0772 2068.0772 255957251 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 21022.7583 3582.6133 70264.9762 6441.9025 295797449 fccab Sulfur Sulfide Oxidation NA Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 5894.2278 10024.0757 12348.4216 4242.7403 77606.5697 25685.8202 103711.3186 2272.7282 9537.4109 7337.2267 5073.7061 32550.5765 167589870 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8072.1345 6366.8703 5149.3103 4631.4229 3077.6899 3130.334 3130.334 4296.6266 6775.6774 9163.7201 5226.594 4722.1203 3405.9452 4278.2986 3941.309 121717267 Dyp Organic Remediation halogenated compounds NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6441.6476 5226.326 3195.037 2369.1629 17788.0985 70993928 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5236.8896 4277.8139 5897.4621 3400.8199 404420637 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 95548.8874 4983.3926 310815873 TIM Carbon Cycling Carbon fixation Calvin cycle Ketogulonicigenium vulgare Y25 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 31124.6212 340361550 linc Organic Remediation Pesticides related compound NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 13497.6786 10825.6932 8589.2297 56680689 nirs Nitrogen Denitrification NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 6995.4231 6873.5908 19316.6908 6048.0015 3181.1746 2356.5699 71424.618 3622.2961 3718.341 7603.0986 5276.6357 5276.6357 7915.4786 4927.0519 13147.5898 2567.1456 14537.7175 7817.3359 7238.8294 2878.2072 3188.8835 7063.6648 260751749 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 51811.3673 5287.3062 3812.2558 6228.2594 8739.6213 2599.9884 338835755 amyA Carbon Cycling Carbon degradation Starch Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 524568.8717 19161.7119 3132.2464 39966938 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9788.7388 8870.1686 5578.454 3240.6436 7942.6725 5821.7882 5836.0559 9116.0756 5106.0024 2386.2306 2917.8339 7567.7939 2310.418 6299.7114 7291.6169 2460.7371 3078.6675 3841.4167 145283012 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 103794.9862 12581.9663 6120.9176 6257.9465 6257.9465 8303.409 4958.7074 9679.6065 4897.5259 7497.1639 2604.0032 5597.4186 25182.8181 3681.9989 5419.1087 389848623 chitinase Carbon Cycling Carbon degradation Chitin Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 6834.2596 5669.2334 13898421 dsra Sulfur sulfite reduction NA uncultured napthalene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 5526.4478 12715.3068 5685.1815 3908.6603 6866.135 317179309 amie Organic Remediation Aromatics Other aromatics Helicobacter pylori F30 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 5152.3877 389932589 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 49206.2347 4156.2327 3329.3485 3629.8588 3958.372 69666.8509 3266.7262 10302.6023 6006.4093 6072.3928 6191.5352 2754.2247 3515.9112 12402.5553 2463.5949 10620.8849 4664.8983 36920.2272 4051.4722 58692.3902 4186.4307 2627.7125 6271.6223 357009009 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 19630.2793 33439.1525 62223.0264 3543.5124 3577.0739 7212.5451 7354.5157 4884.9106 4199.068 7223.3286 2239.739 4150.6616 4135.5993 2932.1606 170692224 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 47965.9362 2191.7988 2191.7988 6183.1336 8324.9567 94985846 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 7035.7961 2589.8053 3395.5687 4932.6252 4315.3515 2962.1473 4566.2044 6773.8344 11949.3776 42846.8107 2251.1636 3975.334 3143.6606 7523.508 51491432 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 69366.3547 2145.6249 57985.5972 4575.6162 94314409 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 6305.0238 344940917 arsc Metal Homeostasis Arsenic Detoxification Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 6660.1797 3814.2875 61165.8183 9081.6066 10042.3787 159182524 mer Metal Homeostasis Mercury Detoxification alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 103143.8041 10430.8445 2989.5745 10827.7085 68485.1759 5261.6333 16284.7948 15951.6516 15951.6516 6574.0822 5645.0655 2721.7213 4944.8748 1659.7593 3336.0498 307216057 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 585364.2591 34804.1057 7901.2965 3096.0865 2594.4963 2035.162 17270.3885 4832.2221 4349.8286 238869986 nfsa_2 Organic Remediation Aromatics Nitoaromatics Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 18364.0826 8052.7911 6319.3854 6206.2357 85648.1117 10893.795 10469.3682 3930.9269 3930.9269 4784.1428 3976.4413 6770.3537 2181.4407 5937.0411 5346.0604 8664.4877 5840.7079 4862.3751 1934.8079 2950.1836 3841.5515 10524.8241 126654881 nitro Organic Remediation Others NA Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8709.6438 31620970 nifh Nitrogen Nitrogen fixation NA Paenibacillus durus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 136224.6743 8997.2962 405516.0491 5356.1549 9772.8846 5191.5812 5191.5812 4199.1909 6262.2702 31961.2883 5293.2071 3952.4474 2895.9628 9986.013 6278.7047 5883.4736 2641.4743 5181.014 6035.0908 82946478 dehh109 Organic Remediation Chlorinated solvents NA Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 5034.61 18537.3724 2619.4595 14297.5356 7945.8401 9549.7243 183748.3454 5018.2238 7351.3223 4988.2339 22594.5072 8211.5313 5357.0538 3928.5867 7539.3813 2481.83 6449.5133 27741.2029 11418.3846 10291.5435 12429.5964 2088.2177 17455.9558 4830.4812 4155.624 148474726 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 16095.1156 4757.583 283953411 ppx Phosphorus Polyphosphate degradation NA Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 228185.1027 10971.8993 118003223 arsc Metal Homeostasis Arsenic Detoxification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 115050.5257 4149.1191 8393.0283 52694940 nifh Nitrogen Nitrogen fixation NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 6371.4899 9156.5266 8488.9717 4069.2303 3789.4657 7201.3078 7013.9003 3483.2111 132975.2378 6577.1635 5860.5413 4706.6469 3149.188 3149.188 4989.0176 10465.096 7109.07 9244.6358 15373.773 8272.5744 2748.1492 3434.0677 7535.3437 5296.181 21918.5545 7854.2147 10925.0401 3464.7929 7309.3239 3508.1176 3648.5121 10105.565 52631724 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 26611.1651 40255.7349 18067.638 2500.2904 4935.2388 7050.2136 7492.3637 7041.7809 298754.3369 13882.2284 5632.4629 8947.7893 7647.1031 7647.1031 2728.2961 14628.3395 9575.9608 3810.1753 6236.6294 8523.0801 2925.2201 6320.5357 10265.2721 2883.519 16485.1346 14529.2455 13060.6553 4029.4648 10864.8691 10113.8349 3434.9281 5720.4283 400344853 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas mendocina DLHK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 4977.9071 14145.6192 55791946 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 49660.7363 7525.6368 2624.5713 63082.7781 3454.1299 4335.3211 2489.9657 2489.9657 6435.599 10216.2604 3167.8699 5752.594 41575.2862 5500.911 8206.3491 118439669 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 14714.4576 6036.0127 40393.519 5072.5306 3701.4665 207163.2814 4849.1071 3721.6574 7147.3544 5135.7158 133992.127 8527.4334 13367.786 8537.4229 4331.0995 4331.0995 5076.1198 11197.4812 7066.2124 21228.48 56502.245 6562.6096 4728.4953 8894.7993 6109.1772 18615.1079 9249.7076 18495.8489 6640.4951 9002.3425 12770.7025 5441.8531 7071.6728 311280358 pme Carbon Cycling Carbon degradation Pectin Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 5835.9016 229454.6917 126105545 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 14094.172 19532.1355 4799.4526 115358086 pcpe Organic Remediation Herbicides related compound NA Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 6519.5007 19349.8199 7903.17 4630.9391 5170.3559 30786.0266 4767.9069 8293.8791 3306.7221 3306.7221 9910.959 17232.2677 4059.2182 10545.5503 17016.4338 7655.8062 3427.1237 4115.8542 70731221 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 124384.2117 8161.1922 2946.0866 13308.3311 3018.6894 3589.6879 2379.9704 6664.1514 9873.3446 3360.202 4014.8721 1897.1609 15470.216 5693.6611 344341482 fccab Sulfur Sulfide Oxidation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 7509.3844 5394.2553 17917.2097 8165.1002 2845.2398 6070.9747 95188.5633 7054.4999 6155.5874 3744.1333 3744.1333 11878.8141 7899.6748 5687.4938 3021.7196 9533.448 9839.1265 9095.4493 7817.556 2387.0743 2739.7893 63146072 phenol_oxidase Carbon Cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 8359.045 10320.2796 2324.2227 14736.8006 3015.0221 3990.6041 3346.6773 58102.4859 18387.2412 7690.1504 7690.1504 6843.8927 3869.3051 2605.391 2901.4661 5820.1442 7782.4449 7258.0738 5655.4429 9867.5712 4128.7087 5889.7459 2105.47 424924.7599 76058263 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12651.3637 2846.8575 30741.1869 11238.1394 27332.5391 7981.2792 7981.2792 12785.1591 24227.8556 2330.9982 10888.875 12812.1364 6308.2747 4174.2755 2497.7456 2426.5172 23932.5287 332377128 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 10358.5999 7835.1387 2900.6522 3026.7829 2184.2138 11829.4592 4435.3883 4836.8741 172222.0772 8414.6588 13856.2115 9586.3338 3978.3659 3978.3659 4468.5397 22416.3722 7185.9161 11655.9713 9364.7096 12094.4416 39262.3497 5918.3278 11756.0853 7425.7558 79970.5222 3554.2197 9628.8879 10468.261 7044.9159 25519.549 9081.5594 78166825 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 11981.175 3157606 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 361605.3176 3133.1554 5107.7642 6418.2859 11621.7621 27492.9006 15083.5265 15052.7948 15052.7948 8390.1032 15909.0557 5419.4445 7241.5931 6734.3429 23241.4766 5614.8515 6637.8583 5072.474 4010.2695 11188.5608 366163394 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 10519.8096 7333.3057 57002.4574 344319237 badh Organic Remediation Aromatics Other aromatics Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7117.7763 5845.0835 18787.714 10757.2392 2732.3643 10359.2534 76558.5214 3889.2909 7812.9187 10698.4484 130009.1895 6978.9251 10362.0178 10235.3133 6609.9104 6609.9104 14828.8572 5789.7456 26820.0371 2088.8801 5188.6614 17364.4145 5336.3325 14168.3556 10186.5678 11527.2229 181436.0199 4920.948 4838.5336 3763.1791 7495.6733 145253493 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 18013.0497 12364.7232 6085.3271 4542.4945 7515.3114 4617.343 172002.2191 6922.0038 3998.9226 6585.9917 7230.0056 7230.0056 2756.3559 4014.7043 6675.6781 8973.1601 2154.534 4707.2528 6433.8138 10261.9403 7662.5818 4961.8325 390852.0679 4719.3294 1945.2527 6286.1253 26278754 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11583.9558 6334.3594 3645.5519 3403.3199 57517.4557 9002.2031 10269.2534 6867.3877 6867.3877 8739.9566 4458.6279 7151.5065 2550.3343 4232.1576 13726.9607 5054.9529 13539.699 145282832 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 6882.0527 3605.7341 5567.8707 72081.0633 3594.9521 7477.1621 6569.8471 8097.5747 6866.2804 9538.3729 2606.3564 2643.4558 8762.8561 3025.2777 11604.7042 6149.5011 9379.3667 2698.3231 3788.2437 3984.3332 2727.6384 11311.7282 316981092 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 60307.2899 7423.1719 4113.8273 3715.9325 2487.8818 145174.5466 6654.5687 24908.5406 2566.0064 2566.0064 8041.0503 4582.298 2982.3813 7068.6993 2074.5318 7439.5512 4200.786 5254.8409 4719.1751 5740.4926 383869566 nifh Nitrogen Nitrogen fixation NA Treponema sp. JC4 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 38396.1257 9524.3177 15783.7238 3145.9871 14666.8555 307944736 nasa Nitrogen Assimilatory N reduction NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 14197.6398 11837.994 5055.5149 4774.4552 9333.3988 2648.6652 344039207 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 7879.7556 99906.0586 9705.5544 2772.3238 6219.669 69245.776 4746.8584 5320.1975 5603.625 5457.5783 5457.5783 4274.4229 13244.8983 5946.1929 4584.5175 3864.1319 11020.0369 2156.2101 8765.0389 5283.4677 12304.2908 2054.758 5026.3519 6395.5498 26297.9474 371952818 terc Metal Homeostasis Tellurium Detoxification Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 7222.763 69603.7038 10131.7688 26177.9858 5808.9325 2980.3348 453223 exoglucanase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 15676.3947 15679354 arsc Metal Homeostasis Arsenic Detoxification Methanothermobacter thermautotrophicus str. Delta H superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter;species:Methanothermobacter thermautotrophicus; 133031.2548 4305.9133 307586209 amyA Carbon Cycling Carbon degradation Starch Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8069.4228 4930.1945 2350.7278 2653.6735 12135.7774 3066.1416 3066.1416 4953.0012 3548.1729 2073.8465 17867.3111 4211.296 6415.8952 2417.5432 2910.2686 207087782 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 73882.5752 251845081 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 36826.3187 2419.0779 38349.3803 17574.8201 3871.3983 16546.5063 304403712 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 11353.9502 357013411 B_lactamase_A Virulence Antibiotic resistance Degradation Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 19088.23 5281.1782 299831792 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 13971.3669 6807.0219 6453.0838 3600.8701 4912.5998 5405.9805 3054.9078 61105.978 4817.1672 4755.4091 2692.4567 2692.4567 4545.3165 9036.5179 6432.5816 3681.0476 5268.2514 3149.688 5005.5867 8038.1332 4370.9251 14764.5308 4585.8295 11514.2533 3365.4216 6485.6133 8872.2825 4419.651 7965.7771 183226000 ppx Phosphorus Polyphosphate degradation NA Lactobacillus fermentum IFO 3956 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 59971.0146 14823.7551 8332.4088 2763.2093 6341.8644 2790.5665 2790.5665 6156.5909 4444.8568 2464.8917 1873.0144 374413645 dsra Sulfur sulfite reduction NA uncultured prokaryote 8880.9333 7744.1577 58425.2397 4392.1173 2338.7239 5111.3658 116613074 one_ring_23diox Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 114317.6329 9320.5726 4589.1602 2285.4632 2285.4632 5506.7036 2751.0698 83026002 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5233.1018 3847.4771 4798.9868 3511.6987 2534.855 4673.7559 2114.8492 251789055 xylanase Carbon Cycling Carbon degradation Hemicellulose Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 384989.2674 2171.4223 21229.4793 3516.6151 2353.7104 3305.5902 16777.676 2765.1922 3401.3848 119466975 p450aro Organic Remediation Aromatics polycyclic aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9385.2432 5638.0117 2839.9741 8904.4108 3690.8557 3690.8557 3791.0635 2304.1232 4866.2775 2575.2998 4154.8091 371445221 mcra Carbon Cycling Methane Methanogenesis uncultured Methanosaeta sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 23972.5541 7323.6897 4243.4716 9704.0475 5454.3985 50733.7145 3218.1203 4684.5873 4956.4566 2859.719 5135.1098 1708.4427 3429.1045 188532980 cueo Metal Homeostasis Copper Detoxification Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 261326.1269 12888.4268 7199.5938 10092.9851 6018.2803 2062.1851 2062.1851 6679.8547 21322687 mer Metal Homeostasis Mercury Detoxification Pseudomonas fulva superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5655.9652 2612.3464 3037.7048 2496.5621 2496.5621 9710.1558 5159.352 40740069 rgh Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8968.0423 4427.1357 17530.2255 7310.2152 7169.662 3670.1372 5093.171 5229.3047 110633.3978 4913.8862 4206.3675 7504.4111 7504.4111 11458.2102 6349.5882 4859.1397 5620.0937 4372.0526 13495.3256 29620.327 14135.0168 9884.0357 9582.6785 2974.4411 4223.7609 12358.0335 3782.546 55791938 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 32031.203 7378.6785 6366.3953 3954.5111 3885.9628 8433.7591 10591.559 55755.1096 4198.3175 26682.344 3046.4188 3046.4188 3492.5814 9073.9599 4180.5999 3675.1294 2364.8561 4608.6993 7872.9543 4291.4854 29034.4633 8913.7956 6883.3777 9272.4928 6546.5013 2204.505 4861.7109 336399249 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 18588.9584 4903.5873 4838.5262 336369162 glx Carbon Cycling Carbon degradation Lignin Serpula lacrymans var. lacrymans S7.3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Serpulaceae;genus:Serpula;species:Serpula lacrymans; 11835.6674 12005501 protease_serine_fungi Carbon Cycling Carbon degradation protein Penicillium citrinum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 80114.7546 11557.9556 4160.1273 4455.4457 5105.856 6065.3005 2045.6794 13236.7401 9416.1009 384040815 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 42453.608 12815.6769 26254.8808 11004.8325 30688.72165 40757.944 49574.8198 45875.5557 35392.5037 21181.87795 345014595 amyA Carbon Cycling Carbon degradation Starch Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 5852.3832 2642.66 3594.4391 4920.8434 13194.0082 8291.8096 170700678 linb Organic Remediation Pesticides related compound NA Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 5718.3543 3580.3044 4951.6302 4436.4124 3637.6838 61610.908 4355.385 7015.1481 6074.1329 2071.8553 17886.9063 6169.5332 2271.552 2857.9161 9070.4966 4666.0442 38479625 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylocapsa acidiphila superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocapsa;species:Methylocapsa acidiphila; 1405985.7549 5612.5515 6052.7757 238934062 phospholipase_B_fungi virulence degradation NA Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea; 15143.0666 7117.1164 9279.5051 5400.1858 7912.297 4163.265 4927.2739 2915.557 3790.5087 4390.9402 60012.0155 4656.5534 4360.8415 4210.8201 12221.7373 5086.6247 5435.5733 3175.9378 5296.9309 12805.4847 2603.5474 14823.8253 6763.7757 11961.7881 5468.4446 4751.8689 5423.5166 2596.6266 333367928 PRI Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 36309.6653 3354.0838 2331427.1701 3726.5392 4756.4138 3886.6675 2912.4115 5865.9302 3639.6199 2973.0835 3571.0179 29547.2585 242223359 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 30248.5828 8904.9174 4202.1047 2810.8916 328923262 RgaE Carbon Cycling Carbon degradation Pectin gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 228994.9165 7184.2269 75993763 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 37143.992 120142.5094 4688.5964 7965.3918 219861464 pcag Organic Remediation Aromatics Other aromatics Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 45563.2359 2253.3542 4883.5092 55870.9684 2985.1497 17921.9995 7664.1996 2835.9112 2835.9112 8423.8413 5325.8842 7021.5653 3631.3137 3999.8712 5711.5142 41566.3632 9659.6206 4503.5363 4340.879 422314235 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67793.5211 26066.2561 72734.1874 2176.8437 10282.5988 4978.4888 3773.3573 2309.302 2309.302 4233.1464 3547.8869 154496549 arsc Metal Homeostasis Arsenic Detoxification Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 464197.3696 48126.6083 14121.7535 5338.4847 4662.0945 6928.0456 6439.178 1628.0359 109452477 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 841862.2804 46076.0564 33325.4352 148653400 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 9633.7121 3094.7119 300023012 cysJ Sulfur Reduction NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 12505.5462 2174.1199 2340.4621 4134.6764 66034.0143 6511.4959 8004.7639 5917.8439 2785.4033 4820.0837 156055226 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 73779.6196 4821.0659 348014503 ppx Phosphorus Polyphosphate degradation NA Neisseria shayeganii 871 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria shayeganii; 50175.2029 4458.6808 4490.0902 2984.6761 2984.6761 6577.8853 10626.5892 3787.3418 6140.594 6521.1899 6560.5291 3129.4364 84667068 tktA Carbon Cycling Carbon fixation Calvin cycle Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 116951.2926 10440.319 3837.4698 2256.0313 2256.0313 4136.3183 10830.1796 4385.5421 3809.2296 85829319 rgl Carbon Cycling Carbon degradation Pectin Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 9079.1248 20920.35 3093.1793 59245.6032 5969.4301 2418.8365 2418.8365 3794.8425 7130.1073 6018.1341 1813.4804 393788082 xyla Carbon Cycling Carbon degradation Hemicellulose Bacteroides nordii CL02T12C05 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides nordii; 7280.8772 1758.4221 313638289 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria seeligeri FSL S4-171 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria seeligeri; 600265.3255 2846.4348 2183.3512 119452792 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 103282.2735 18026.6279 7636.2653 6288.7342 3409.7345 9062.4893 17162.4194 154061.4685 5971.1387 13983.9172 4226.6039 4226.6039 3519.5367 11355.336 7279.5292 13488.3158 10388.2413 6780.841 5091.8465 4062.7535 11364.5323 15913.985 29774.0189 4236.8294 7156.3231 4311.1366 5429.0735 6394.9189 5146.6811 19734.7945 400200620 chnd Organic Remediation Other Hydrocarbons NA Achromobacter piechaudii HLE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 6561.7053 4423.511 8478.3643 2029.442 7367.1673 27433.3349 5621.2973 3997.5849 1783.9602 1783.9602 4224.2548 3944.0663 30930.3661 17685.2932 2517.4707 4799.7884 3142.1341 3182.8489 334118137 mer Metal Homeostasis Mercury Detoxification Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 5707.998 3800.7357 2846.071 4271.4539 66826.8073 4164.2881 6381.9895 3936.8794 3936.8794 8399.8846 4547.1357 29050.0823 4589.898 2927.8974 5456.4386 12458.2726 7262.0167 6454.0474 2949.6556 229817877 trza Organic Remediation Herbicides related compound NA Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 6857.3391 12716.386 4995.0843 4009.9322 4467.6229 12305.7575 2743.6465 4495.9669 2878.1234 8614.7041 307746423 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 13007.2978 11820.9674 4735.5737 4952.1317 2694.9107 5024.8073 7956.8505 9195.054 267320.241 6825.6923 21162.729 6358.024 4857.1713 4857.1713 12015.3418 52120.659 8817.2271 6037.1912 24037.19 4460.608 3167.0047 7316.2649 8781.6227 4374.3192 16709.701 13035.3538 8874.0514 7218.1594 6690.5997 7774.4839 4257.6498 13188.9959 145241706 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 90059.136 8273.6064 87281300 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5689.2252 7088.1959 2706.4803 4514.0043 89842.627 4301.0273 8270.3303 5682.9809 3344.9286 3344.9286 4173.2089 13907.6812 7577.0317 5300.4741 13299.4645 2587.3676 3163.3818 9192.8284 3290.2325 14878.7647 12201.3137 6760.9176 3983.3151 3273.4044 4952.3922 4571.3075 6604.1237 375147070 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 78255.5937 13662.9748 264648.2516 4820.4975 16242.5832 13508.2762 24942.7168 9975.5691 13405.3494 6784.4657 76467.7201 15203.496 3125.3284 13180.2828 14441.1482 14441.1482 7242.5219 9668.1983 7794.4811 8428.658 8119.3754 5464.1978 2231.0381 7512.2892 11405.3903 2457.6155 14593.6386 27423.4641 9421.0269 7664.4387 6845.4301 17846.9446 2331.9901 10338.8697 336253837 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 14297.7824 6517.7537 10421.9196 4490.9401 2873.0298 2873.0298 5319.7853 5137.6063 2372.6995 15076507 actin_Viridiplantae Other Phylogenetic NA Parachlorella kessleri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;genus:Parachlorella; 49921.5428 10977.6759 226306223 terc Metal Homeostasis Tellurium Detoxification Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 5608.1037 6304.9012 3600.0714 6419.1427 13815.4735 4910.0814 4318.7735 3310.8016 105442.5722 4276.3416 3508.9186 8652.8306 4943.2053 6794.8694 6115.9501 10470.8589 3129.591 2655.0083 7656.9776 2978.8477 12137.3633 5680.3132 2849.0145 3087.4888 6201.5774 2751.7892 7135.3218 119409961 linb Organic Remediation Pesticides related compound NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 11227.7961 4738.3973 2919.3336 1625422.6568 386851775 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 5024.0446 4335.3538 3386.6554 4693.771 8955.7791 8955.7791 4451.0373 8016.3188 4403.7124 6266.9094 7704.2857 4684.5862 23502.9737 8250.1253 2600.2766 365792044 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20299.748 15271.406 10359.3774 5367.2598 2361.3118 262086775 mmox Carbon Cycling Methane Methane oxidation Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 461785.3001 30144.1983 3168.7196 317055945 rgl Carbon Cycling Carbon degradation Pectin Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 545013.6308 98604.5127 8918.5729 332377376 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 24129.9912 7709.8971 56129.0607 455849.5607 90747.1524 257803559 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 149130.1221 8915.0612 3640.5896 3640.5896 227509178 cpna Organic Remediation Other Hydrocarbons NA Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 6109.6259 13319.9811 2312.8671 6289.2951 81772.0073 2568.6688 2568.6688 3665.6476 8399.3288 6493.5074 79248.7203 2480.2379 3557.0898 8256.3074 5020.0343 8950.9586 6054.2146 2190.723 4033.2584 4572.4977 5129.9372 159172859 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 35484.8473 4147.918 3317.1093 33544.3499 4250.3629 169848168 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 13299.1141 2731.9466 8127.1849 3220.0796 3925.6176 3925.6176 4710.3069 399020088 tfda Organic Remediation Aromatics Chlorinated aromatics Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 5169.134 12052.2427 5863.4195 71603.3484 2895.2007 8603.826 6290.3386 2844.5095 138843.0458 2035.973 2035.973 7337.4761 4443.0944 14209.0025 6002.9982 3476.9378 4175.8141 21601.9408 4738.8335 8756.6793 4077.7394 4820.2416 10552.676 118134417 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 9774.8894 118424509 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 69519.7628 27630.2213 4772.1246 5730.317 13098.746 7538.5917 8315.2903 152979188 dmsa Organic Remediation Others NA Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 61843.7856 5425.8655 307941893 rd Organic Remediation Chlorinated solvents NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 9290.6468 2585.9831 142926.0153 3398.7886 9501.7105 11898.2745 2113.9902 111609816 assa Organic Remediation Other Hydrocarbons NA sulfate-reducing bacterium AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8672.9756 4408.8999 4610.5722 3595.4945 11420.0425 5191.1607 3728.0632 8764.2241 102790.4843 4239.3568 9993.6517 17427.2486 17533.5264 17533.5264 3352.1925 6806.753 3196.1761 9053.4501 18471.8108 10501.6724 24809.3838 9815.0711 31604.4916 8067.4821 8425.3136 50095.9707 12405.5873 9139.6812 3685.529 6202.0477 229490414 amyA Carbon Cycling Carbon degradation Starch Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6025.6815 19991.9099 16850.4969 35048.4869 18707.2084 12739.6891 11248.1959 22415.896 171842.8257 4328.90975 4328.90975 16605.4432 36746.6285 40535.9021 40995.3077 13879.6204 23319.408 9833.3142 16276.9644 21748.4199 16260.272 36806.9831 27436.2079 23521.8462 16929.9978 13324.7448 19701.4189 8061.5636 27224.6046 255292646 xylg Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 22851.2857 4580.4323 2716.7888 5371.5955 295111899 amyA Carbon Cycling Carbon degradation Starch Synergistetes bacterium SGP1 superkingdom:Bacteria;phylum:Synergistetes; 292417.7118 15435.9538 120402452 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 32298.0545 5513.7063 10237.3903 16184.0938 5232.7751 4992.681 4890.7765 5756.1784 8073.4065 7287.0525 87904.2041 6436.0092 7109.8258 10778.0285 3901.5815 3901.5815 9723.0605 9941.9813 7785.5982 19723.4604 23653.7717 9128.7701 5829.5973 5389.9124 4119.7959 21609.9402 10542.2331 11813.5667 3458.7554 5367.286 11507.0808 2710.9195 222431091 beta_agarase Carbon Cycling Carbon degradation Agar Agarivorans sp. LQ48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Agarivorans; 110548.1607 333372938 merb Metal Homeostasis Mercury Detoxification Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 40457.4902 61743606 mcra Carbon Cycling Methane Methanogenesis Methanosaeta harundinacea superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 70940.3436 110997.4786 6585.3106 3451.9982 53726.1878 5295.0968 5678.3041 5795.6755 3822.1936 2617.8879 8726.1982 2166.5839 7856.4139 6015.484 7496.4173 2688.576 3678.0173 3687.4741 2453.4119 219883075 mannanase Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 10376.1745 8596.3251 4968.8305 4162.3439 4434.5974 4307.4346 9786.7713 4459.2191 164685.8682 7250.7273 8768.6455 12445.8579 5710.0588 5710.0588 6743.9086 20510.6292 14513.7369 43637.8539 6890.2656 10396.707 4602.0945 10860.1809 14950.4679 3998.9988 17645.6727 9042.035 8876.8901 5252.4647 10968.9389 6265.0644 3080.3778 147886134 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7949.1062 5392.8379 330962136 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 32426.1291 24386.0883 365834158 tehb Metal Homeostasis Tellurium Detoxification Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 18446.507 1692.9868 4042.9796 1738.5479 304317348 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 11741.0386 15213.6248 300448086 gdh Nitrogen Ammonification NA delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 20362.045 6211.3408 237867588 ppk Phosphorus Polyphosphate synthesis NA Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 15894.0978 2860.6611 34757.8233 2648.4362 3583.7582 3862.3815 227090.4725 5499.8134 13651.2645 4617.2009 4617.2009 45721.6257 2096.4323 22937.9512 6330.455 6410.0876 4291.7293 2628.1767 11034.9275 21323173 ppx Phosphorus Polyphosphate degradation NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 7360.1066 66080.8865 5664.9029 2500.002 11011.8925 2779.2996 4115621 endochitinase Carbon Cycling Carbon degradation Chitin Xanthomonas sp. AK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas; 8341.4432 15793.7735 34875.6266 11335.823 8115.78605 11626.3416 15238.34295 229060.05175 14187.9113 8664.2512 17224.5531 11461.91605 18660.378 15306.3936 9317.94165 10126.58405 20985.3473 27965.7815 19316.0443 23760.0478 7159.7039 13174.0805 13429.4083 17534.86385 374336684 pcag Organic Remediation Aromatics Other aromatics Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 10836.1619 7712.3982 2571.3676 5453.2543 6075.6503 4137.7694 7672.0035 2112.7949 6892.7485 2200.2386 3095.099 5296.212 347734851 amyA Carbon Cycling Carbon degradation Starch Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 6299.8594 3864.2496 3252.2622 4153.1312 421953198 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11996.6407 6440.6318 5867.7649 9470.9517 60372.22 4808.3316 7118.9994 6122.697 6122.697 21503.2781 4939.0426 5232.7569 3007.5165 3309.2611 30138227 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 99550.149 8780.5536 76636.0896 146192311 gdh Nitrogen Ammonification NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 17209.9104 5547.8234 18911.2401 5500.4683 2461.488 4762.0731 5801.8256 4159.9931 103802.3184 3847.1239 8729.6903 4871.3341 3101.7896 3101.7896 3627.9649 4933.0537 7914.0365 4824.0778 10415.9102 2928.3959 11660.9247 6811.9616 10972.411 4778.0126 5439.612 4946.5502 2553.9645 349688561 PRI Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 5756.2654 5109.2255 4778.3249 6647.4257 2670.6462 64463.125 3763.1019 7988.3199 7227.1144 7630.8051 6313.9059 6712.9646 7987.7159 5930.9253 2684.1124 12739.3213 2389.7897 9756.7572 7447.554 6019.4348 6041.3056 3035.3581 4039.2383 3065.9281 7827.4369 83643103 tehb Metal Homeostasis Tellurium Detoxification Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 12187.4294 49606.8636 8393.1769 3916.058 5109.3294 5109.3294 6354.0988 3796.3468 7232.1312 6751.7111 5596.4424 9539.1526 3072.0526 8799.5145 5543.9763 387937816 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 25905.2648 2548.9894 5856.0056 2212.0977 2212.0977 7532.3959 2031.7579 2760.0351 2647.4216 8586.0859 389576145 nifh Nitrogen Nitrogen fixation NA Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 20521.6531 5300.1749 3994.1921 5940.3997 2935.3566 131752.4828 6931.2832 5014.3199 3087.8702 3087.8702 3265.8292 6775.2578 4266.8759 5958.026 4550.9831 5151.4249 3256.3661 3089.8507 6054.6853 2265.319 9513.2542 7772.1109 11532.5026 2893.4655 2891.9381 4524.1277 5833.0266 56314320 arsc Metal Homeostasis Arsenic Detoxification Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 5581.8038 17933.1625 17918.7576 10076.6092 3665.1184 3184.2661 3714.0093 2672.2798 80095.0774 4446.8851 3390.0177 6177.0287 3116.7277 3116.7277 2628.9634 4909.9499 3997.166 10498.5022 2557.9492 8691.9303 10371.7068 11404.8224 2757.7591 4630.0933 3370.9028 120556724 chnb Organic Remediation Other Hydrocarbons NA Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 16592.22 1922.9888 4162.3952 88779525 chitinase Carbon Cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 23420.823 4906.8664 7298.72675 6281.7662 2273.7849 18384.0594 9386.5682 11541.0531 118504.5578 6622.7436 8945.3497 8322.0404 11296.3566 11296.3566 4804.8186 21166.4746 5369.2747 13260.6025 25848.1173 27437.7273 5501.4022 19108.7287 34458.5981 12561.79665 11681.90185 4345.37355 8988.1459 8961.7174 34316.5637 7710.2606 290570122 arsm Metal Homeostasis Arsenic Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 6359.1556 10677.2125 4011.4696 3418.5845 3478.2932 3048.2262 3048.2262 5250.2717 5721.8973 4458.3079 4801.5085 4181.0091 4485.2313 2258.5108 5551.0813 1982.8075 2779.4915 5129.6775 192806796 ligninase Carbon Cycling Carbon degradation Lignin Ceriporiopsis sp. MD-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 7099.1344 7475.6771 5698.1709 4085.5473 4366.9765 4181.8142 27286.956 11732.2219 11732.2219 15946.6473 136348.3789 44826.8109 6755.4832 4554.4649 4920.6092 7526.9582 3288.3957 325297840 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 37462.061 3347.713 5173.0817 6397.6647 6216.6442 3179.5199 3179.5199 25244.8502 10962.7824 5096.8622 157369400 arylest Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 5061.1876 4088.1479 216243.6985 5105.6445 12334.8601 8672.5866 2766.3927 5508.0626 11908.7362 5670.5658 2604.3977 6383.2458 2340.5336 239826723 alkk Organic Remediation Others NA Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 20546.0056 7484.4123 1886.6134 2677.7958 4053.9868 119395258 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 26238.6186 6427.3458 116297.2738 4428.8964 3443.7346 5243.3603 10360.209 566777.9159 5776.6351 5410.9067 27408.914 7834.4276 7834.4276 4282.9792 70671.1181 14459.4805 15423.693 8366.4294 5765.1089 3266.938 6471.3373 7320.5474 16382.3861 8563.5999 5910.7946 12726.3843 3536.1585 6294.0065 11924.4843 6106.6137 12138.6348 34017154 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8792.3347 10819.4316 13255.5896 9701.6934 3439.0287 4408.0326 2829.0146 103579.558 7083.8633 5205.1125 8658.6966 3424.771 3424.771 3096.0327 6356.0841 3745.7366 13348.6774 9885.1197 8141.8464 9323.0505 3560.3455 4701.8623 4324.1572 2353.1929 291544122 xylanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 9084.9696 2758.8334 6109.9564 8533.9371 4467.0286 163754338 amyA Carbon Cycling Carbon degradation Starch Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 6195.5201 13637.3172 325546271 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 23283.4275 53903.7121 3494.7118 2822.6847 2488.6306 4718.7336 6294.2265 115926.7166 9560.03 4559.7191 3734.961 6212.5522 13940.5156 8325.1228 5169.9429 2636.2614 18304.785 17107.8579 5334.5583 8729.2998 4324.4832 6946.3133 22654.3962 9063.4246 6815.1752 88819041 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 6086.1694 11424.9343 2111.7395 3871.853 23782.2028 23456.0594 4403.29 2583.4462 2583.4462 5321.9886 2909.8306 45386115 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 10571.0551 10914.9379 9677.7565 15390.753 4830.0157 205733.1527 4496.0964 14511.9606 5648.7318 5648.7318 6580.1091 10435.6851 3137.2672 17538.4398 6881.3295 10805.8159 8449.1905 9614.1283 5360.8827 6865.7179 4013.6215 8835.9984 291543070 amyA Carbon Cycling Carbon degradation Starch Ruminococcus bromii L2-63 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus bromii; 214115.9475 345302151 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 7189.9816 11071.0996 10753.9334 6580.3553 18138.9846 7975.0614 20563.23535 5022.80625 111938.4081 13069.3514 23046.0384 6315.9049 6315.9049 6758.04355 18836.4265 7549.9146 8231.67155 18321.6478 4587.3918 7987.8645 14375.06415 24646.4179 9688.27945 5380.0403 14662.1923 17963.0651 377820591 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10696.7808 6924.3637 2516.0649 122370.5791 11750.809 4509.8977 4509.8977 6507.0586 4077.6885 5025.0426 5754.5165 3161.226 2562.5418 11231.1065 6997.2701 2063.2431 3932.9242 2549.9889 292677803 rubisco Carbon Cycling Carbon fixation Calvin cycle Oligobrachia mashikoi endosymbiont F superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9370.0411 4948.5556 4056.3059 4937.103 7221.9994 296255901 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 31501.9115 2566.2429 325545238 tfda Organic Remediation Aromatics Chlorinated aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 6711.6475 3277.3784 2251.1719 72036.3137 4408.0882 6137.9839 3556.0043 3556.0043 2416.1599 8286.3635 3409.1351 2913.6952 12947.7909 392951484 xylj Organic Remediation Aromatics BTEX and related aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 1688819.5475 578981.522 6823.4424 47949.3503 36607.6149 3686.4172 2623.1752 6081.4877 4304.4042 2534.4236 262396242 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 245889.7818 3266.0629 8759.7958 2797.4235 4328.1673 269219796 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 14171.5068 473250 phta Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas pseudoalcaligenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5432.7058 8906.1005 12215.8702 36922.349 2516.7567 7714.3617 20589.7895 105474.5394 7251.8754 5730.0402 7008.6669 8987.7644 8987.7644 5153.7442 26692.0253 5504.5508 8577.3937 3073.1646 8139.1444 36411.4694 9825.9384 6801.691 2603.869 7331.3586 4280.12 4074.6075 157081772 ppk Phosphorus Polyphosphate synthesis NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 7062.0848 3636.7259 209538970 catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 11337.948 119948470 amyA Carbon Cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 13520.1045 5808.1363 239834014 cmci Organic Remediation Aromatics Other aromatics Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 5231.8326 2253.8939 9865.1926 5299.5226 3612.9467 86665.7353 7419.6038 5635.4868 7208.9895 8926.3435 8926.3435 78244.747 4817.628 6574.9483 4086.5999 4460.648 2288.6286 2855.8255 11057.1582 3655.9492 1757.0472 3284.0681 5281.2327 4744.4191 209498108 arylest Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5527.6073 21134.6841 6433.8856 7823.3845 7230.8404 2905.5684 160848.6727 5142.289 3245.1511 3245.1511 8208.6746 14971.8385 3976.3411 89931.8549 5199.892 3944.9733 2593.144 2968.267 13649.9672 14083.3638 2015.4578 5545.611 7928.1868 3878.2586 254421146 glucoamylase Carbon Cycling Carbon degradation Starch Brevundimonas sp. BAL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas; 9185.8024 6837.3217 3154.5913 62616.9477 4095.4497 2655.9135 9932.3032 4911.1154 5248.5687 306836103 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium accolens ATCC 49726 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 65853.3568 9179.5132 3645.9729 98975756 amyA Carbon Cycling Carbon degradation Starch Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 5793.8255 15997.8874 13755.009 2478.6662 4579.6345 106065.8938 4280.8357 3544.3255 5721.7533 2581.8311 2581.8311 8222.1181 7855.0268 3434.5656 10033.0474 6593.1645 6387.3849 3026.6781 3363.68 3288.6812 2065.3216 45723453 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9050.1384 6232.9599 4079.4978 4403.737 2375.6214 299742989 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 40110.9362 5826.4588 3810.7446 5951.4173 5951.4173 5865.9365 4034.7546 4061.0931 3146.9519 2959.4932 4237.2963 1966.4195 37521725 rubisco Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 75990.7439 3209.1249 2886.4211 2541.6388 5105.3294 4512.6021 6508.1568 3321.0032 10145.6097 5219.672 6105.3531 6506.183 2397.1921 3261.0832 9546.1305 3367.9277 7433.1027 8588.7308 2788.3462 3714.2939 5421.0504 6884.7569 7816.2877 126224625 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia pseudomallei 668 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 5322.422 2289.8212 4198.9254 2119.5854 4613.0832 61374.0165 4013.0551 2151.3466 2151.3466 3367.812 6820.0792 8044.8691 5857.6769 4584.9211 3287.6812 6304.3155 3284.9326 7290.9858 2454.3483 5488.7004 5262.2343 2664.5927 4927.4007 332297336 amyA Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 11625.1143 3333.3078 2656.193 3828.9164 3570.8261 89421.0175 4804.093 3582.4887 1896.0821 1896.0821 3406.3119 5981.1827 3592.651 4103.2296 2287.4481 7177.4563 3156.1256 14541.3653 6444.007 2712.0096 5337.7994 7993.1046 2530.0909 9941.8059 296803520 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 13888.5934 2226.727 3860.1511 10285.6378 156061277 lactase_fungi Carbon Cycling Carbon degradation Lactose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6686.8563 11496.9605 8291.0826 2801.5642 3326.6372 3844.6258 2923.60565 5078.38515 4317.6287 4391.2193 7443.4613 6744.514 4077.0507 11505.7698 6337.2102 4199.9893 6389.2292 3579.4342 9511.5855 5259.5564 6124.3529 2928.35455 3324.6504 4722.0653 380511221 cysJ Sulfur Reduction NA Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 12694.2675 10879.7988 18099.0813 5275.4891 16315.2462 3117.1733 5274.9735 13818.4056 13818.4056 22648.5663 4325.2826 9445.5212 6156.068 3870.856 3487.9877 5579.6591 10322.8632 12242.5394 4696.4849 6094.2462 2147.5133 4117.7472 5863.0284 2875.2263 41078903 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8553.1376 5165.5918 23895.3431 4049.6217 10357.8373 3748.6234 2039.849 2910.0379 1995.7352 115422025 ppk Phosphorus Polyphosphate synthesis NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6011.3913 7827.6081 37340.3936 16183.7775 3593.3232 14679.0222 4544.5484 4497.3652 5192.3511 403649.5226 15595.8242 32141.7029 35854.4935 17955.1554 17955.1554 4637.5079 17481.4371 12031.4412 6446.4036 9445.5007 6047.4451 3175.3394 6707.1005 32693.4327 2777.4448 20429.1525 8461.2501 17854.6266 5722.8283 6717.0588 7420.501 2492.5637 9702.0513 223585872 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22526.9954 4806.4523 8934.4828 6134.4099 72246.7272 5820.2243 3846.138 81801.9334 7245.9449 4501.4001 23406.835 23406.835 6989.3733 4801.753 5860.945 3252.3757 6481.5858 11745.143 10511.4804 12155.996 1873.6324 3026.9217 6467.715 3436.2137 5248.2489 325051673 aoxb Metal Homeostasis Arsenic Detoxification Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 25626.7952 4982.9951 8447.0041 4592.7995 2527.4602 5346.9176 2176.4018 2176.4018 3173.5479 6995.7503 119548.3576 6802.5773 10295.8383 8629.1336 10378.8993 2048.2812 2831.1602 3305.2305 6432.7975 336314124 RgaE Carbon Cycling Carbon degradation Pectin Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 5968.5616 9820.7976 3799.4911 21144.3923 4649.2353 7496.7072 3519.7212 58962.9581 6660.4195 3800.5285 15426.3702 6999.7319 5326.1338 5668.5988 11998.0546 2695.5627 2953.9472 8138.6216 4606.6467 23689.3622 6033.42 10107.82 4236.909 5969.2456 8386.6493 5991.3104 6449.6502 332377246 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 166992.0425 298243.1955 4899.9989 355396522 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thermovirga lienii DSM 17291 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermovirga;species:Thermovirga lienii; 5787.136 8239.506 5334.0047 124017.3064 5751.6723 5726.915 4800.1546 7425.9144 6145.3509 7815.8359 7524.4923 2865.129 7230.0524 2713.6676 12315.2708 7406.6322 9792.6694 4617.0237 5490.0364 6815.5132 309700138 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7558.0494 4499.9942 15478.5861 5484.9361 3308.2752 121707616 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5726.8537 2009.727 2009.727 14088.0598 198272302 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 7001.5685 6165.4048 7167.359 116201333 pme_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 24098.8651 23766.1111 6994.9632 3189.7331 73736.1189 8521.7347 5550.1611 5550.1611 5682.7271 7121.1212 6114.3276 6276.2533 6717.3196 55978119 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5430.4651 29327.8567 3065.704 4696.9597 6774.196 3671.314 580935.0276 6032.0474 6032.0474 7259.1928 5312.3892 10266.8025 6103.8452 7628.8225 3466.9305 170141860 proO Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 18953.2394 4330.9927 24733.0573 2603.4727 8247.4175 1995.0373 3749.2972 3467.6111 2117.5164 134362.9575 5626.8965 10987.7954 8103.1667 8103.1667 4708.5009 4404.4589 3219.4012 11237.6926 2425.9161 8866.9298 7757.5549 12786.8623 6394.619 5601.5792 6549.5383 2083.0788 371718015 chitinase Carbon Cycling Carbon degradation Chitin Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 17415.8104 13048.9431 3433.5757 4343.0231 76048.1169 3671.9692 5699.1275 3916.9352 5497.0667 1736.7019 386815444 fccab Sulfur Sulfide Oxidation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 13855.7881 225181448 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 6289.957 148806814 tfdb Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. RD5-C2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 209985.3616 4494.7089 2916.0711 4472.7957 2522.5463 77625.0181 8033.6133 4767.0866 2115.9447 2115.9447 2970.957 6251.9066 2833.8458 6374.3339 7396.6284 3800.1815 5304.9653 2458.3959 4781.0871 8884.9612 4035.9874 39258.1061 284448060 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 48742.665 23668.8667 6840.0788 2256.6242 5069.9189 90042.2199 8550.0568 3239.3095 3239.3095 4914.2121 3813.6057 5585.1717 6612.6793 5607.3706 2446.5255 4635.5733 14038.2122 5882.8567 5607.8795 171741029 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 37103.4313 140519.207 4228.2886 384066872 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 11772.537 5121.0226 9196.8759 3337417 nahc_2 Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 9178.5333 4781.42045 3243.6913 3237.0259 14696.76545 5571.56995 2395.5957 54896.0252 4662.98315 3738.1729 3886.0566 10976.20965 4062.8854 4178.9889 7185.9067 2432.1794 2686.41175 7193.28105 4130.73005 8758.6531 5513.74025 5379.43475 3786.5915 3412.36795 3725.048 2588.1726 7890.6684 120403769 amyA Carbon Cycling Carbon degradation Starch Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 5518.4378 10024.0019 2746.678 8909.435 1955.4984 1955.4984 100228.2616 3071.2776 5683.0132 49490.8678 3619.8046 326655018 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces griseus XylebKG-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 17311.5606 7350.0478 4494.7004 5062.0062 4367.9735 75578.6232 17168.9756 9672.793 9672.793 11315.843 5049.7986 3367.0206 7218.5031 10988.5927 6856.3877 2593.5938 4210.1898 12631.5711 2357.3627 16423.8957 239809545 xylanase Carbon Cycling Carbon degradation Hemicellulose Paecilomyces sp. J18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Paecilomyces; 54026.1964 14993.7045 7238.8742 14663.3605 4907.8486 4885.28795 12652.9247 8523.8529 8523.8529 9640.0418 13195.19015 14425.366 8959.7323 3419.05285 10378.9738 21519.4204 30927.4606 10550.9703 12969.8307 237684067 arsc Metal Homeostasis Arsenic Detoxification Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 9043.5448 8361.9024 2981.0126 2981.0126 7215.121 197337231 dmsa Organic Remediation Others NA Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5509.8415 4709.1611 3675.0423 4263.4061 2363.7844 87878.534 4274.6899 4333.7769 2770.3211 2770.3211 6703.7551 5545.4638 4475.662 6391.3942 2700.8813 5616.1737 1899.3347 3413.2273 3748.9388 6816.7391 268312745 amyA Carbon Cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 13327.5396 1665475.3702 13240.9176 2831.3706 162568589 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6595.9108 7993.6551 3023.6696 2908.7166 5390.1172 6472.0423 6472.0423 7483.9248 4587.7233 10247.6543 4973.6574 3318.8023 18248.9382 7252.1991 5430.6879 2827.3527 302890211 badh Organic Remediation Aromatics Other aromatics Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 4857.0066 289471366 dsrB Sulfur sulfite reduction NA uncultured prokaryote 6788.3144 254029646 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 93813.7478 329113482 TIM Carbon Cycling Carbon fixation Calvin cycle Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 223804.9075 323533691 cda Carbon Cycling Carbon degradation Starch Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 22934.3968 6590.0473 345119.4414 104594.6841 108975.9715 7449.9592 6856.6116 8832.2524 5989.907 212261.2168 11570.5818 9931.7796 4847.3328 4847.3328 6454.4909 47668.4171 12918.6109 20911.0707 25796.195 11565.2331 5827.7476 7275.7325 21044.8008 13428.1531 31174.6856 9742.2979 18481.3679 15496.8247 10561.9077 8194.2658 10713.863 19706.145 62512282 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22266.2631 3638.3744 55926.0817 3862.2364 19013.8697 4262.3487 4442.4921 3384.6415 3384.6415 4481.9698 2830.5847 11891.8576 363416306 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 5146.2903 8393.4099 17835.965 5170.5044 2521.7672 13856.2914 3892.704 108487.7666 15228.8421 5463.8521 4878.4027 4878.4027 5750.1589 5674.2794 3848.9302 3377.281 5836.1527 2751.4558 4406.635 5507.2483 2680.8691 3465.4045 4469.302 4316.7167 325269701 amyA Carbon Cycling Carbon degradation Starch Prevotella multiformis DSM 16608 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 12232.6483 12623.0288 9303.3229 2997.0644 2098.2995 3030.5924 7419.2602 3920.6303 4399.8347 2291.7802 2291.7802 5857.4831 3426.9457 5172.9925 8737.2785 4789.2264 4132.8323 3661.0707 2858.3564 186660342 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4804.8951 8203.5275 2969.9367 3233.9714 2985.941 5387.4569 3339.1827 89354.8729 6536.1829 5960.9119 3598.4175 3598.4175 3732.3047 8235.2626 5625.2615 5746.0568 4254.0923 7142.384 3451.3235 3240.8238 52923.9059 3418.51 22322.1453 3227.7597 6353.1051 4608.253 4231.912 329298803 amyA Carbon Cycling Carbon degradation Starch Plautia stali symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 14108.7066 4165.2838 82728.6972 10350.1499 2745.3948 3830.1838 2627.7719 37726798 dsra Sulfur sulfite reduction NA uncultured prokaryote 39749.4911 319898833 FBPase Carbon Cycling Carbon fixation Calvin cycle Bartonella clarridgeiae 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella clarridgeiae; 13214.1765 11824.7529 3118.5695 3002.9786 4090.2985 3878.5343 75933.6956 5330.5594 4130.5964 5691.8431 4523.5899 4523.5899 5215.6525 8620.417 7165.179 7756.1471 3789.4164 3775.1799 2515.5367 10260.0924 7572.0033 6541.9805 2071.448 3656.8584 4225.5359 3259.1687 6202.0148 157315744 dmsa Organic Remediation Others NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6069.7147 4909.8801 1895.3213 164456066 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 50271.887 34028.2356 3393.8167 2893.3602 6661.5989 3087.8184 2991.0424 5647.6345 3061.6139 7963.9562 11047.8761 1648.8124 12788.8076 11872.8641 18265.5399 116671987 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6413.0114 12379.573 9933.0035 3511.1656 4656.4156 2308.4279 5919.4396 12841.5738 2658.4194 74364.1098 4844.2462 5507.2891 3354.8574 7102.2528 5766.7307 4242.0739 6239.0118 3034.7162 4089.7157 12763.0566 6162.2782 5905.9607 2240.9816 3650.7786 3627.231 2938.1858 4947.2563 154423268 catechol Organic Remediation Aromatics Other aromatics Alcaligenes sp. NyZ215 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7372.5791 13731.2134 1976.7025 1976.7025 4159.8164 330808901 nosz Nitrogen Denitrification NA Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 97404.1062 15221.8005 6852.148 3258.3922 3258.3922 3231.6748 6853.5612 8273.0512 3084.2294 299766962 ara Carbon Cycling Carbon degradation Hemicellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5937.2029 309790111 chitinase Carbon Cycling Carbon degradation Chitin Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 10776.5523 4946.6567 77382555 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6505.6737 3184.7296 6536.7588 13941.7118 457444.8528 5961.5262 6082.8892 26891.0249 23180.8827 23180.8827 3359.4656 4392.8557 335864744 amyA Carbon Cycling Carbon degradation Starch Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7685.1211 3388.025 21110665 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 28625.3821 2489.7965 12212.6169 64778.8561 6577.1183 3723.9144 3723.9144 26260.916 4256.4139 4649.9443 4288.7056 10032.5272 13376.875 5707.661 7383.4376 2590.4858 4428.4037 3846.0173 3639.5394 5454.0834 213402557 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 21053.0517 1939.8076 4853.2805 19458.1923 19458.1923 3529.6282 28432.8634 170941612 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 9736.0076 2628.5754 333936728 xylanase Carbon Cycling Carbon degradation Hemicellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 9451.7941 6144.4015 6144.4015 12888.093 317154925 ben_bcla virulence NA NA Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 27034.3445 3290.2345 2615.3846 393165069 one_ring_12diox Organic Remediation Aromatics Other aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 6847.594 288868758 nitrilase Organic Remediation Aromatics Other aromatics Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 315763.8305 5058.5743 2478.9394 2592.079 2818.8574 2968.0086 2035.6733 363413867 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 5643.5264 14170.3777 2853.6016 4324.7684 283783915 cueo Metal Homeostasis Copper Detoxification Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 10198.9397 4270.8657 3670.6529 6193.1007 4367.9291 5359.051 2674.5952 3834.2679 4794.7855 446441.2386 2060.2787 7984.9691 1839.2593 2906.314 4152.9318 403644665 one_ring_23diox Organic Remediation Aromatics Other aromatics Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 25532.6803 17551.915 69050.9302 7242.3976 11029.2814 28978.1772 11886.5811 17634.9247 31701.0785 31701.0785 13791.674 27654.1417 43438.6148 10785.32455 22459.1154 8384.5984 35211071 ppx Phosphorus Polyphosphate degradation NA Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 15845.0158 7820.6406 8222.2459 117648044 xylanase Carbon Cycling Carbon degradation Hemicellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 15233.7697 3472.6577 4161.8594 22432.9219 3558.6628 3071.05 12621.0758 147886230 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 14099.8713 304560504 endoglucanase Carbon Cycling Carbon degradation Cellulose Edwardsiella tarda FL6-60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 15580.8951 28594.1967 2691.1723 4675.8071 3563.3208 7573.5566 4547.1452 2064.0207 2064.0207 5625.0029 4055.2072 3957.3318 5522.6046 2680.8908 4116.8519 9989.4168 2710.3182 12484.5427 2969.7273 3476.3719 4650.8454 148567463 nifh Nitrogen Nitrogen fixation NA Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 67039.2254 15487.1803 2557.0452 6950.6252 5860.4515 5860.4515 5996.7975 4956.7128 5046.797 2626.2776 3281.0461 3279.8423 88864893 phn Organic Remediation Herbicides related compound NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 4486.7974 4491.3032 7139.703 4328.6427 3881.8287 4845.8795 2763.637 4620.5572 302879757 terc Metal Homeostasis Tellurium Detoxification Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 5769.6972 19299.0142 3308.2436 3175.0353 3175.0353 440775.7026 175843.0558 4547.2796 100140.812 257445968 amyA Carbon Cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 235257.5709 2954.969 5680.078 5067.509 2696.3518 59625.1582 3728.8955 4770.2816 3016.343 6678.2404 5622.1572 11097.943 3507.5109 2941.2622 3877.269 5861.8588 4994.0088 3091.6886 4498.4832 2524.2235 262275109 cysJ Sulfur Reduction NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 11170.1728 16920.7059 8893.4594 3292.2634 24346052 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 7111.0628 1976.8153 4450.7062 8607.1985 4177.0731 3019.0552 26232.2036 7225.2443 1965.8404 16580707 mnp Carbon Cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 35061.4746 4340.2455 8925.7359 126721509 cmci Organic Remediation Aromatics Other aromatics Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5974.8338 2352.5829 3182.741 21352.1104 8404.3525 86166.4206 12169.9813 6595.1674 8008.4469 12996.7817 12996.7817 9171.0509 4977.9358 9636.2414 2830.2003 2544.5954 4598.7395 6569.8349 3623.3558 3119.7694 398246114 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 22838.1555 9028.6643 6148.1764 2706.093 227131.7207 3394.019 79871.8108 6765.5102 2187.5477 2187.5477 6806.9698 7509.8574 6304.6916 5349.3536 6999.1013 5720.5888 3687.1829 3092.5819 7167.156 2331.4144 17942.2426 7090.201 7792.1296 4637.8936 4120.3409 4103.3219 4412.3214 5426.0262 301119163 rgl Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 12232.8299 11258.8405 8735.7895 5730.915 4409.162 3711.359 4600.0874 4600.0874 5561.8425 3782.2665 5206.3169 4167.7948 4608.1885 5320.7817 5161.8171 5058.0022 2094.3158 2975.6959 3443.02325 2256.589 5329.8569 186470675 terc Metal Homeostasis Tellurium Detoxification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 5103.9301 3883.4462 16292.0588 5068.7534 2818.8616 68054004 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 5626.5405 3044.1941 8013.2458 3598.7597 74026.3277 3833.0814 3730.1429 2599.8634 4785.8477 4747.1271 4931.367 5225.1535 3392.4827 5519.1528 1770.5174 3126.27 5251.2057 2940.1476 4825.6924 68552621 mer Metal Homeostasis Mercury Detoxification Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 6042.3777 2810.9386 3222.4073 3556.9397 3934.7014 71074.696 3396.4904 2107.7654 2107.7654 2825.9497 8914.9533 4830.9667 3938.5675 5499.135 2852.3853 8423.095 3069.8136 8158.3011 6935.5544 2588.9336 3570.9121 3370.52 2070.2774 5075.7751 386396370 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15527.5051 3550.1088 237625017 bphd Organic Remediation Aromatics Polycyclic aromatics Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 16161.7344 143762.3882 2721.6195 3098.8701 26347.8061 5344.3173 3291.7911 295513.6098 4680.7241 5448.2829 7273.1377 7273.1377 11334.0472 270110.1307 8138.4388 10370.4392 12499.2289 22846.4981 7959.2068 7551.3638 2389.2396 9113.4868 4646.2041 4786.2454 2607.3455 3035.0608 3418.9721 3074.4513 110632136 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33780.5174 11122.4347 5866.8505 4692.4695 6390.5423 227342473 xyla Carbon Cycling Carbon degradation Hemicellulose Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5609.6041 2287.7919 4027.7788 3063.4773 5474.914 17442.8265 3514.818 8437.5264 17995.1649 31939.1313 6036.7052 6036.7052 6553.9382 9861.4178 4899.4482 7102.5851 16485.6391 5566.6196 3364.8315 5161.8153 8820.2908 15413.1909 17139.6624 13840.6559 12620.9029 2196.0708 4816.6056 9640.6312 8230.3303 7599.909 83318552 p450aro Organic Remediation Aromatics polycyclic aromatics Pleurotus sapidus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 6061.7187 2015.1018 5652.0752 4863.6857 383701839 chitinase Carbon Cycling Carbon degradation Chitin Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 29894.6217 6135.9926 320160125 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 5977.8768 374601903 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 277259.926 6568.5708 21116.846 9518.4661 7797.0473 7797.0473 3640.625 23586.3944 2537.2671 311305251 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 166625.2231 6115.3982 5125.1439 327548880 catechol Organic Remediation Aromatics Other aromatics Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 6382.3594 2314.8641 3733.5515 145254245 phospholipase_B_fungi virulence degradation NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 21111.24135 13330.6072 9015.5694 18880.82385 16071.48675 27219.43565 33584.91165 13230.5332 42399.07775 27038.6703 29482.2365 39991.14965 19418.57745 22788.255 36345.13745 31149.8237 13429.0686 21630.26925 31056.34165 29182.93015 356881357 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 456410.1596 61049.9069 5955.0628 5300.3071 117649371 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 5485.9547 7802.0547 2321.4437 7340.4557 2387.4949 8511.3553 7148.721 5543.0316 3801.6175 5389.4864 5556.6935 6698.91 6698.91 3093.1051 16820.579 4549.8155 3746.6255 4995.5621 4150.1898 2598.2761 3935.3501 12057.4922 7126.1332 18498.0652 8336.5166 6450.4553 4858.0484 2762.991 3463.2318 2475.2541 359248618 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 20356.0097 11923.2534 7529.8904 5402.2685 6864.8221 123514.9971 11887.6347 11887.6347 6520.0937 4194.0088 4081.4894 11371.9378 2311.9357 3385.1902 4473.2856 11457.4816 119957954 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 6756.2636 2395.9602 3484.8391 3484.8391 67851279 nifh Nitrogen Nitrogen fixation NA Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 7710.4277 78169694 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9517.6631 4187.5438 4672.6549 3517.6274 6000.9312 1902.6055 219965718 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5100.6899 10544.7232 5677.79 5563.4878 4489.4845 303314759 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 328554.2558 3091.9891 330816279 ppx Phosphorus Polyphosphate degradation NA Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 5105.1829 4969.3351 3800.7614 2020.6525 3666.3138 6712.9428 62305.5487 6822.7872 4314.545 6168.3287 3103.006 5547.814 4779.5303 6714.2576 5273.7099 13736.8015 6994.0397 3373.3402 9756.392 8725.9233 4004.7576 4719.1207 5609.8229 4254.0717 6091.4139 315446017 tehb Metal Homeostasis Tellurium Detoxification Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 5369.9681 8406.283 3628.1966 54872.1555 10437.0136 2677.8277 6631.5581 5777.8014 8197.8334 4138.5262 8026.7758 10448.5495 19497.5053 4177.7358 4263.6056 3881.6217 116804624 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 146852.5822 21918.8936 5417.009 27477.0797 4020.7171 9987.0469 3765.575 79906.0015 3436.8651 6681.4769 7356.8083 7356.8083 6060.7434 5199.3203 16715.901 3962.1744 4589.8032 3674.2375 10231.6462 5747.395 10692.4954 6859.3361 8251.1366 4113.8321 4121.694 5269.4864 4669.5647 3387795 pcpe Organic Remediation Herbicides related compound NA Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5494.893 10678.6092 3371.6884 3665.2366 13080.9594 5366.8655 10717.0056 6707.3405 5256.5659 5256.5659 7851.704 4965.3855 9261.769 5311.8265 3397.789 5245.5175 219675079 linb Organic Remediation Pesticides related compound NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 377199.4943 6665.6443 330688078 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6780.9866 3234.8847 6118.6501 3523.7955 8312.3198 3653.3244 4213.7415 8316.1821 8825.6392 8279.985 2485.9436 6613.6521 3509.1951 34186.1631 4761.2627 6093.9395 2370.8721 4244.5256 5747.3038 2741.7057 7509.1807 149233319 ppx Phosphorus Polyphosphate degradation NA Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 4862.6295 7337.5885 13049.7086 2427.1944 7126.239 7773.3774 4622.3733 4427.5987 2339.2195 3615.9892 1745.1846 2528.8586 15660.6007 159891063 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 5475.3128 3432.8882 3037.0464 5592.2032 2255.2879 3669.9123 10789.005 3010.3531 5507.5089 337262663 amyA Carbon Cycling Carbon degradation Starch Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 33654.9752 3644.8992 3784.9174 3890.7432 9633.0775 2819.8412 2819.8412 3733.735 7564.5362 6995.7275 10332.9249 5256.3893 6338.5555 36042.9435 1735.4287 3200.5451 3330.8442 2473.0982 346321983 ara Carbon Cycling Carbon degradation Hemicellulose Cordyceps militaris CM01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps militaris; 57043.921 2976.0452 20587.1021 10322.9964 5492.0957 111308.2987 4127.4198 79907.1914 3057.9774 3057.9774 4001.1783 12758.22 5631.5698 5658.3945 11174.4823 21086.383 3721.3172 5481.6905 9349.5117 12754.934 4922.5074 8843.2792 2139.3281 4738.2311 5586.1208 3616.9845 5316.5737 254509886 rd Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 83038.0775 36032.6921 6038.8307 5624.6593 2620.3653 7688.8079 9228.4101 54006.2792 16440.2952 16440.2952 2644.91 8424.2987 5403.1554 2674.869 4515.0443 4658.8381 2398.0614 4951.8508 8452.8912 4272.7942 73540091 mer Metal Homeostasis Mercury Detoxification Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 67977.2142 170116477 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 5298.5152 10149.5329 5075.3079 10250.5291 8332.8365 4734.226 110453.2807 63623.9189 6424.8664 8898.1922 11125.762 2674.0732 2674.0732 3643.9043 11749.0694 5764.4067 5434.0503 9332.0915 4367.1023 4584.7918 4214.1999 15960.4515 2672.6037 17748.1882 6478.6716 10226.5606 2949.922 5460.6679 7434.6933 3229.5764 33162.4002 410662005 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. CF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 7933.5848 400533606 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 6486.4454 7175.8694 5333.3403 66315.3058 2182.3663 2182.3663 3885.5968 49570.3939 7040.9183 2818.5259 269219878 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 78754.483 9054.1372 28819.9547 6020.4721 6324.1349 365269935 napa Nitrogen Dissimilatory N reduction NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 17333.2082 4524.0351 2054.2234 2961.3769 3423.1738 3452.646 5622.6261 2079.7605 2147.411 4829.7294 342831375 amyA Carbon Cycling Carbon degradation Starch Streptococcus mitis bv. 2 str. SK95 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mitis; 193029.9567 39137.6326 333940576 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 6744.5519 4365.7646 3764.2611 4275.2618 13336.1101 2999.1389 9059.1067 2950.7328 210176.7226 5569.7327 5050.128 4616.2951 5572.5343 5572.5343 4456.3371 7887.6845 3696.2536 9139.4699 5376.495 3285.6783 3876.9567 9270.6334 3948.0356 10077.4979 5239.2148 9441.6651 2548.7482 5995.8241 4793.8334 2217.3605 7852.209 289548494 urec Nitrogen Ammonification NA Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 284994.8182 10025.8442 359295624 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 11501.637 7284.0744 4594.4767 5343.7308 9938.9133 94790.4729 5047.8012 20319.6341 8144.8767 146911.6584 11545.6269 9047.8882 12520.3934 11390.9059 11390.9059 3398.6079 11154.9509 4470.8325 4952.6734 9419.2163 2031.0534 20697.1991 7355.9135 5073.9149 19964.1429 8667.8183 8858.9651 8069.1569 9093.542 9288.8796 3287.5366 121543059 mer Metal Homeostasis Mercury Detoxification Candidatus Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 41940.7003 2850.0805 2380.5995 25718.3757 15131.4626 353671577 PRI Carbon Cycling Carbon fixation Calvin cycle Commensalibacter intestini A911 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Commensalibacter;species:Commensalibacter intestini; 5212.3864 6128.4589 2743.9222 2401.6557 5129.984 4181.5181 101323.1297 4905.3131 6385.8958 1997.3767 1997.3767 3929.895 7097.8581 5072.937 4580.8303 4560.0586 5026.1279 2236.8168 4816.0194 8933.6352 4621.1045 11893.4707 5713.0505 8368.9493 3859.8806 3648.225 4144.9726 3952.1507 9138.8372 218763938 arsc Metal Homeostasis Arsenic Detoxification Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 6287.082 9428.484 4320.7617 3497.9676 8723.6976 4565.0165 36298.8384 2471.0835 6949.5584 4648.6843 8613.093 18270.112 4072.7263 15770.964 114314960 exaa(moxf) Organic Remediation Chlorinated solvents NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 441656.2371 13557.318 3157546 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 4904.8298 2629.5149 4407.7538 3167.7941 3165.8724 162317552 cellobiase Carbon Cycling Carbon degradation Cellulose Periconia sp. BCC 2871 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Periconia; 6789.907 4253.6839 5808.2844 38906707 chne Organic Remediation Other Hydrocarbons NA Rhodococcus sp. TK6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 9272.2121 3419.0278 7256.4387 12241.1914 2722.0919 2722.0919 6179.3208 79078.8214 4143.855 6179.6731 2856.5715 89473884 nifh Nitrogen Nitrogen fixation NA uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 10182.8822 372556769 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Leuconostoc citreum LBAE C10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 46403.0047 4612.4655 18281.0121 22680.7213 3739.0167 5547.9951 104703.9397 6681.7007 12152.9708 4505.4443 43555.3494 10214.8312 41205.7657 4927.9362 6372.676 2290.5311 12480.0946 7938.184 5724.1536 2815.1903 7186.425 4427.8321 4145.5814 234474.0221 218250443 amyA Carbon Cycling Carbon degradation Starch Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 5247.6305 51444.4758 4278.9431 4278.9431 5673.9374 4153.1513 339883116 narg Nitrogen Denitrification NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 147631.1656 6414.054 12010.1453 3398.8473 2849.778 6890.0685 3945.4068 4717.7392 5079.4689 2629.3112 2629.3112 3758.0009 3785.46 2284.5325 7767.8353 7870.3445 5347.4568 2332.7656 2493.5482 27966.9458 334128788 amyA Carbon Cycling Carbon degradation Starch Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 6040.7189 7253.4768 2036.887 2816.8057 6209.665 5188.0996 4430.5531 6836.7387 2848.5376 6736.8983 6178.5739 4983.5333 4502.313 2838.7833 95110683 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 4743.9282 2294.4315 4225.7562 15291.9902 1985.8263 2990.0331 5281.3919 5470.7886 7188.4048 7185.7255 3526.6886 6807.4453 8796.546 353550311 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfitobacterium metallireducens DSM 15288 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium metallireducens; 5415.6667 5477.4502 3718.1581 312110930 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4510.5904 9081.97 4133.557 4246.5345 3793.7082 8927.9256 6064.6918 2821.1114 78121.3152 9276.9953 5854.8114 5854.8114 4691.5187 6896.7221 6204.9362 5768.6013 7738.1021 6328.5398 2868.5145 3821.954 7830.9847 3148.706 17909.3368 7901.8283 11540.6179 4794.3493 4330.3111 4363.202 4650.1494 11912.1311 365226848 cysI Sulfur Other NA Staphylococcus pettenkoferi VCU012 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pettenkoferi; 7859.5323 3157686 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 30869.7235 10747.8166 4119.4173 5869.0479 6661.0502 2923.1813 323341153 gdh Nitrogen Ammonification NA Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 8927.3979 58766.5864 24916.2504 10639.2001 16010.3715 3726.3611 83932.5547 11834.3794 3021.9022 3021.9022 4945.4918 3337.9553 2587.4759 7259.6216 2696.0903 4772.8631 8959.1635 3289.7542 6326.8101 7237.5444 344035775 rgl Carbon Cycling Carbon degradation Pectin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 8178.8107 16710.4106 2903.2391 9343.399 4783.6047 16132.2446 83324.4639 2522.2538 2522.2538 4842.7368 8627.0197 5688.9054 8554.7638 3545.2323 7958.9672 3838.4575 14113.0897 9395.3941 8693.9156 4761.3529 4776.2255 3085.8787 20065.922 118470941 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 5722.4013 7729.5062 8439.8837 2806.7332 4266.2522 4711.135 3413.4196 3378.1855 330386.8785 4213.3843 2137.1993 2137.1993 3837.6902 5790.5351 4958.8822 5470.6908 6015.9081 7999.1046 2590.2177 7288.0557 8685.3065 3006.1818 64178.6628 7136.2161 2856.2601 4608.711 4093.9596 390616131 amyA Carbon Cycling Carbon degradation Starch Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 8413.1056 579815.0894 7829.2358 1820.2691 384160684 amyA Carbon Cycling Carbon degradation Starch Bacillus amyloliquefaciens TA208 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 15316.6625 24384.4925 3229.1653 4187.7103 7500.8269 9672.2145 2902.4397 335123.4297 4857.4731 6789.9353 29054.7463 3656.5467 3656.5467 8225.296 17141.0461 10933.7728 58338.1521 20775.9047 29214.3588 8505.3329 32710.306 6544.652 19972.5599 4309.5682 47846.6572 5683.263 227467114 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5332.0704 10415.1305 6266.6871 7718.6538 15086.3098 2752.3353 109815.1898 13963.8446 7365.9975 9603.4151 2428.1055 2428.1055 9623.6743 13974.1086 4840.8383 3857.2212 10080.7794 2434.0627 12125.4113 9749.6634 11126.2955 4058.8485 5695.7366 4118.9309 4864.22 90439731 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7536.7668 2364.4342 9568.9293 2662.638 184197561 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 10375.7448 7765.2233 3042.4171 3336.2179 5152.9856 5775.2106 5775.2106 11650.2516 7741.6362 4737.421 2575.7781 10467.7824 6428.7681 11673.1367 4886.492 6070.6262 13584.8062 2132.1247 4938.1369 46917278 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4747.272 14730.6556 4494.1569 2886.4664 2886.4664 5062.3449 4941.25 6786.8571 1956.9702 388553565 norb Nitrogen Denitrification NA Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 6501.0907 7389.2671 3456.6348 3456.6348 9069.083 453224 exoglucanase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 30693.9248 3441.7957 3217.4388 3048.6307 4664.8934 2909.6868 57604.7777 4830.294 3786.2045 6338.5536 6338.5536 2977.0919 4468.6583 3766.1907 4334.0209 3288.9157 7882.2746 8996.172 4262.996 8855.5358 2192.143 3882.9894 3106.1273 5533.8544 5041.653 351779721 pme Carbon Cycling Carbon degradation Pectin Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 7181.0571 8541.9639 4510.0134 7485.5744 5242.8532 2120.7647 1810.9168 2995.7682 326385387 cysJ Sulfur Reduction NA Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 9939.1885 36135.1047 6280.8967 2093.107 23059.3253 70725.8213 5037.9946 5571.5231 4046.979 5099.6767 5099.6767 3513.0943 2894.5386 7264.4782 2174.128 5616.6566 5283.0562 4321.6474 5128.5928 2898.0227 154362242 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 4532.3835 30014.9538 10058.0125 3630.5202 2946.5575 2946.5575 6368.8507 3767.6819 9702.0822 9337.8089 4933.7734 6799.4804 3898.8628 13449.7994 371668715 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 7_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 3875.2797 7202.0271 389795866 amyA Carbon Cycling Carbon degradation Starch Rhodanobacter fulvus Jip2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter fulvus; 5835.4272 2690.6752 4350.8071 372464312 Sir Sulfur sulfite reduction NA Kazachstania africana CBS 2517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kazachstania;species:Kazachstania africana; 5120.1809 2448.3927 383773640 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5118.3085 3391.3264 3455.0173 2381.4877 5169.8119 5200.0081 354581352 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 5409.9761 2466.3609 2120.5255 3312.1756 4358.4943 57268.6129 5253.9578 3295.1082 5063.8892 7948.2096 4319.1232 4433.0349 6123.5839 6424.7892 2105.3695 8862.5614 6407.0349 4163.4821 2576.1267 5945.4305 188520917 arsc Metal Homeostasis Arsenic Detoxification Xanthomonas oryzae pv. oryzae PXO99A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 7042.5884 6091.631 3223.1492 2722.3722 4030.8612 3283.2743 5421.5247 11042.3019 2852.9341 227495642 gdh Nitrogen Ammonification NA Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 4762.6789 153808537 pula Carbon Cycling Carbon degradation Starch Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 34460.1142 26446.6374 196477505 norb Nitrogen Denitrification NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 4678.8717 8583.6514 4277.3705 4509.5592 3136.3541 6852.3949 8287.7996 12055.7456 12055.7456 13614.7679 39252.9477 5827.9537 5084.0341 5630.4475 3686.1062 3294.3293 10599.0933 7852.5993 3481.6678 11416.0332 8213.5165 9202.9262 5695.8196 6268.8664 6866.1649 49220.7065 4322.5379 227485490 gdh Nitrogen Ammonification NA Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 35015.6339 153962930 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 5817.5658 4846.6901 2302.6268 3091.0121 6205.6205 63254.6242 3887.5969 3960.7121 1982.5235 1982.5235 10234.4797 6663.4535 24751.011 3492.2071 2727.4263 40389.2045 11973.0388 3303.0536 3888.2867 4398.1341 3189.7964 13966.6396 192359201 atza Organic Remediation Herbicides related compound NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7932.2242 52020.6362 4171.6129 7317.8878 116205780 amyA Carbon Cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 136332.5733 238358.3416 364543.6468 6729.7288 163892.6386 2221.7981 24498.318 45995.0178 16736.3353 302664.3011 54620.7721 69015.342 48901.1624 23195.7799 23195.7799 40855.5413 80693.4806 124432.5699 55571.4599 217324.5511 25426.9147 280193.9561 117063.1385 187149.7468 78130.4922 65055.8626 104431.1177 23955.3547 73537515 vgb Virulence Antibiotic resistance Degradation Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6998.392 8221.2421 5844.4294 81589.9982 3644.4212 3173.8069 3984.7816 7303.3332 7303.3332 5911.2083 6610.8778 15064.4191 5575.2968 2873.9329 30138231 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 11383.9592 11466.928 10170.8658 14187.7886 6185.4124 6093.2476 2860.4907 2860.4907 6999.0264 4240.733 6605.8225 2999.429 6042.0647 4075.6628 5990.8646 2811.9223 4105.8662 4293.6264 10579.9826 356697070 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 6919.0494 19179.6517 7067.7967 79943.219 46021.0588 7722.1525 5357.2944 8411.6641 2392.9188 5013.4653 5599.3319 3071.606 162955599 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 4214.4242 4723.967 2401.6067 2621.7763 3673.7016 17230.2789 4227.1938 94978.9815 6069.7927 4840.1355 5489.3528 3641.2633 10276.8047 5580.369 7040.8537 11373.0141 4663.5886 7115.6733 2485.1578 6563.9834 2997.8046 10499.7434 5278.3095 5753.5928 4712.557 3750.0831 3954.6159 3069.3333 5637.8301 377558978 gdh Nitrogen Ammonification NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 5501.2228 14433.2219 2823.4922 6169.8003 3444.2869 5008.5849 5617.1267 6679.4826 6045.3242 25775.1844 7433.056 7433.056 4319.3728 5157.11 4811.3897 4945.6593 2171.9606 4876.7542 12469.5284 6705.1421 12888.9005 8214.3611 11350.3194 2885.5993 7286.7531 48894.4871 27907.4988 170743819 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 5108.5096 4339.1756 92178.1047 4443.8929 5608.9517 3069.1747 2900.5782 4302.4291 3280.6832 3396.7728 2749.1174 5843.6959 156527120 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 4576.5282 5419.843 104304139 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 257954.9051 2020.9007 144107.542 4263.1162 5195.0469 309368970 arylest Organic Remediation Aromatics Other aromatics Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 5298.756 70986018 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 6393.7055 19651.9774 5987.0772 4366.5412 3062.2366 3062.2366 8130.1004 8847.8276 5775.6247 2163.7183 3252.2178 283379466 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus salmoneostramineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 5486.9465 9708.1659 325554761 amie Organic Remediation Aromatics Other aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 4264.7603 1832.3495 1949.6071 18032.5625 4764.2809 5326.5311 4267.1481 2293.0963 8072.034 2779.301 3206.3587 2606.8512 409404658 oxdb Organic Remediation Aromatics Nitoaromatics Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 10287.8537 16330.3033 5557.2658 3401.0667 3876.3124 3779.433 94222.6216 3950.867 5684.0608 7653.7094 3252.3543 3252.3543 3156.2419 11646.2788 6689.2773 4515.8651 3564.7822 7037.21 11701.6787 2742.5413 15023.7616 9420.941 9705.29 5163.3312 3877.461 3432.9109 4072.0686 5143.1654 302520067 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SPB78 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4489.5302 18443.9668 12075.1199 2739.3848 63763.8842 3839.2625 3044.715 3044.715 3955.1652 1717.0892 8438.3948 354571054 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 4696.1427 2883.3718 297565553 arsc Metal Homeostasis Arsenic Detoxification Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 19381.9694 3208.9507 3208.9507 2541.1063 224520161 pme Carbon Cycling Carbon degradation Pectin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 10027.7504 3033.8091 4626.2384 4210.1607 12937.1624 5811.0357 10422.9366 32610.7337 32610.7337 2797.7002 14004.9408 22979.9831 5562.9795 3906.769 5057.0213 6605.1301 10128.3462 12967.4757 10505.7255 8406.183 26089.6754 4610.947 7393.3002 374313153 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 5751.9459 11489.2066 4483.6318 4266.6563 6225.0785 5046.0001 4356.9912 133277.9691 7696.7796 857503.0837 4439.7748 3048.1807 3048.1807 3701.6197 10672.966 6998.8618 5597.3293 31276.2237 11075.0725 6348.8791 4490.1223 21285.6272 5647.2823 35511.0072 6790.2139 14975.1874 6670.4132 5946.3211 7652.1585 16903.1108 5074.104 336363815 Sir Sulfur sulfite reduction NA Serpula lacrymans var. lacrymans S7.3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Serpulaceae;genus:Serpula;species:Serpula lacrymans; 5638.9772 4051.8229 19937.773 2525.1201 7469.8243 239824424 FBPase Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 5866.9277 7906.0913 1936.6171 4979.7932 73835.5015 4499.2025 2415.1944 2415.1944 3206.9583 2517.8131 4913.6176 2288.9105 2950.4016 4937.1757 85671829 TIM Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 13014.3872 15255.6086 14761.4089 2866.7063 4510.5144 4726.1721 3241.5461 3241.5461 6350.8529 5117.1334 2553.2141 10559.9019 7482.8106 8711.5042 2547.8077 3417.9948 386788820 linb Organic Remediation Pesticides related compound NA Mycobacterium sp. MOTT36Y superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8290.9264 17368.0472 20720.9332 2720.7182 187384863 adpb Organic Remediation Pesticides related compound NA Stenotrophomonas sp. SMSP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 5760.3839 9419.2145 4291.51 6119.1328 4930.9391 1764.4193 315001902 aoxb Metal Homeostasis Arsenic Detoxification uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7169.1006 3816.9872 2669.3726 3452.0281 67585.534 6139.7805 9672.2319 3479.658 7624.1208 5027.4081 14583.1833 11365.3481 11476.1089 3186.4238 2671.8583 2783.8069 13504.4623 5900.4459 7839.1676 3189.4772 3459.4613 4646.2475 2953.1892 12161.3926 271500499 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6795.161 13882.9112 2760.6358 160880408 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4613.8665 3230.8577 2898.8514 10629.263 3789.4067 5189.0669 1698.4785 2938.7161 33598203 one_ring_23diox Organic Remediation Aromatics Other aromatics Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 174237.9825 4402.692 2811.3494 3391.3819 3187.3331 3500.4266 13072.9647 7837.5407 10712.3971 104779928 atzb Organic Remediation Herbicides related compound NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 38220.90405 44416.03075 20892.7502 30637.33685 61065.7233 17902.14945 33099.5908 664307.0957 33014.72925 27527.21825 39106.8232 39106.8232 21850.7925 58587.9951 33037.9972 37822.6735 11656.5723 26002.86975 27516.25815 23450.61195 45521.52175 39628.5588 16990.9165 26569.2273 13748.09795 315301700 ara Carbon Cycling Carbon degradation Hemicellulose Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 5285.3888 10522.6899 145251493 ophc Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 4562.2522 56849.0517 31668.4585 3861.679 3759.5962 3454441.3281 5138.7596 4776.8333 6666.4932 3399.4379 3399.4379 5519.5982 5844.1765 3854.8064 3098.3781 14084.7367 2490.5066 10321.7757 10266.603 10799.9564 4034.0785 4602.1115 8920.7216 1952.7761 377576725 ppx Phosphorus Polyphosphate degradation NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 6359.1588 8001.0527 3267.0762 11442.149 374346796 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 6041.7736 8217.6305 7639.9451 4033.4609 4270.5376 5876.6914 2701.8973 73682.868 4245.4729 4561.3298 3127.4609 6968.004 13224.5572 7103.0209 4271.1799 3319.9941 11040.3993 5440.4644 5473.2637 2597.728 8504.6411 7663.6043 60293.2566 83749598 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4909.8915 2515.9694 4854.3973 4630.0109 3168.2609 5563.4405 7951.4233 11693.4506 11693.4506 2536.5647 14662.9131 3499.5054 6031.472 2381.5265 3168.2471 5494.6053 7299.5627 13882.195 5612.6197 5826.7673 2380.6589 2999.6509 5601.5005 171914724 xyla Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 4983.6032 16925.2893 9322.5789 4430.0657 3063.7949 9168.7439 3007.021 84387.1376 7307.2471 4978.6689 8310.6204 6158.6557 6158.6557 3718.4891 5340.4496 4060.6741 4272.6573 3846.9977 9813.5233 3462.5159 11808.3484 28352.3331 12944.8195 4086.9439 4687.9877 3372.7607 5730.1747 186686421 PRK Carbon Cycling Carbon fixation Calvin cycle Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 62316.4374 2408.8032 1905.9603 89145106 ppk Phosphorus Polyphosphate synthesis NA Microbacterium schleiferi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 4554.4195 8491.3512 4644.8314 5361.3328 2642.2535 4269.4588 4448.0356 2402.6144 90573.2163 6697.3001 4628.23 6866.1828 7359.9183 6765.867 6531.1685 5262.0603 2955.7772 8173.0297 6933.287 11006.8394 8764.3647 9570.2623 3212.2789 4637.1785 2644.2979 7561.74 392727225 b_lactamase Virulence Antibiotic resistance Degradation Methylobacterium sp. GXF4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 4126.1802 2541.3944 2205.1715 7356.3436 3614.0753 323671.1066 13433.904 6377.6318 43693.2279 31562.1927 31562.1927 2644.7431 10585.2953 6864.9374 3832.6749 5716.3937 17490.3987 3756.9692 4076.5237 5769.7637 4855.2073 16291.7518 5355.7747 6233.0082 2978.2946 6732.4593 14301.5547 3097.9834 6282.942 117164775 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 13516.2067 22958.9261 2946.0856 2818.1419 5198.2946 4155.721 5018.2142 102253.7272 8902.5855 4702.2401 5198.5149 3077.5895 3077.5895 3316.3756 5153.3756 6555.1042 2656.521 3592.6223 13268.0659 3289.4935 14875.2046 9535.9221 10014.0815 13326.0306 5305.644 4609.7723 3109.843 5523.4257 315470386 cellobiase Carbon Cycling Carbon degradation Cellulose Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 4766.5909 2514.6901 4178.9132 159888.4442 7088.8919 4805.0599 8053.4143 7794.1228 3111.2744 2114.188 4143.8961 1964.5825 3624.7132 90020590 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 427861.3142 5940.7368 60814.6232 71708.7142 8080.9517 4469.2859 8478.461 2423.0675 89535.1381 78518710 xamo Organic Remediation Other Hydrocarbons NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12408.5165 1841.7475 8602.6537 7507.503 4036.8807 2162.8891 2162.8891 6821.6756 4341.5739 6240.2691 2706.9382 354721864 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 5592.9982 3366.4045 3190.189 5113.4295 7710.1028 2034.9471 209547726 dehh Organic Remediation Chlorinated solvents NA Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5767.4099 12947.586 2624.3276 3501.6502 4729.5672 4729.5672 3070.4697 6201.4128 18469.6515 4253.461 5406.8685 6650.4923 2330.1497 4424.6434 5841.5115 3111.866 4283.2675 2853.9218 4361.95 300770980 RgaE Carbon Cycling Carbon degradation Pectin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 7200.1534 8801.1498 2613.9439 68215.5142 3720.6027 4465.1224 12391.8829 7005.1905 4430.9844 332297253 amyA Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 47044.8263 2693.9844 2160.2088 83683.9321 16208.8731 16208.8731 22742.2084 6921.8907 6053.7698 7139.8014 5721.804 8939.3652 3252.9584 10968.249 3769.6794 4934.4428 209486575 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 438609.3184 4463.1568 4636.0129 332180066 ppx Phosphorus Polyphosphate degradation NA Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 7721.7573 8693.1578 5014.5584 3143.065 4045.357 3898.6079 2258.1367 2258.1367 5537.759 7294.6239 6009.2217 6019.8799 2283.962 3649.4668 240009117 SoxC Sulfur Sulfur Oxidation NA Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 7105.9124 14332.0565 6057.6555 2636.072 59770.0883 12244.9505 5207.3621 7202.8963 7202.8963 2373.8986 6420.0502 5076.7307 5531.5698 3324.9963 2785.7081 386817857 dsra Sulfur sulfite reduction NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 7334.4566 2376.4146 40739518 amyA Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 18000.2742 12754.454 162283252 nitrilase Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 6806.6851 46842.3325 19687.9589 3107.9613 99727.1398 4464.5831 5462.4326 10272.9859 6696.8167 6696.8167 7453.8929 3920.6859 3160.235 14248.5752 11427.9337 12551.4904 7147.7313 8610.5945 3872.9305 5592.4939 3040.2978 407256573 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 7563.6512 313901286 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. HGF2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 5196.8689 292816435 xyll Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 6810.3068 7867.7404 7258.6603 4474.9667 4614.3715 2892.7517 75386.3257 8458.3782 4549.177 8929.2994 8124.9756 4720.1784 6157.6777 6318.9774 4087.9664 3278.2845 8833.3645 3945.0594 10709.5784 7934.6536 11025.142 3508.309 5080.0921 5508.5008 3172.0835 6981.9282 229591541 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4529.9268 8293.0089 2247.889 5280.829 2139.0849 2139.0849 9563.7623 4942.8085 8671.0943 2536.3873 6235.5733 8215.6993 5039.6844 3384.0587 3410.0944 5693.712 339647481 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 20000.8333 15658.3816 8009.9803 10943.3319 4564.9746 4284.2891 5140.3895 85708.238 4053.8515 5527.2317 8451.6761 7056.4205 7056.4205 3834.9721 7176.0224 12480.3827 26779.0074 50515.7368 18153.8171 6494.3047 8277.4731 3761.1775 14790.3303 7241.3762 9729.4976 2842.2496 6440.1261 4778.2301 2574.0797 8478.3664 325331250 nifh Nitrogen Nitrogen fixation NA Methanobacterium sp. AL-21 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 6660.9212 108758817 terc Metal Homeostasis Tellurium Detoxification Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 4216.8343 3441.907 3913.5457 2458.7273 2400.1171 260612904 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 4995.3976 27959.0438 6321.6666 2262.1938 2818.4111 2818.4111 7956.906 6718.2862 12518.4591 8042.1245 241773310 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 5425.2701 5928.2218 8378.1023 5565.9005 4451.7174 4383.7054 6197.8676 4005.9112 6169.4754 2408.8326 3155.4419 76577478 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5200.1606 2684.2705 2911.9701 6015.1078 4107.3963 80721.2732 3798.7007 5076.7109 9692.6823 4965.1569 4839.6443 6513.6509 6917.6615 3121.847 2824.184 11171.5932 6025.4292 8050.2246 4284.6354 3237.665 4876.7522 4281.1394 8157.2927 68164666 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20040.2763 2399.4717 3051.2509 2559.4593 14066.3056 11985.5393 4900.8611 8668.9651 34028.8844 3286.1395 3286.1395 4822.366 9477.815 3573.5057 44120.0694 10122.6855 10461.6972 4325.9355 4987.4045 10209.4698 4847.575 18244.7346 6020.7856 9213.8412 4521.1828 11842.2149 6963.416 3227.2464 10338.1809 284443879 mcra Carbon Cycling Methane Methanogenesis uncultured organism 5673.5836 338740926 ppk Phosphorus Polyphosphate synthesis NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5266.3157 5338.8278 73762966 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6384.602 15343.078 345136752 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 4639.9031 3630.8688 300072626 tktA Carbon Cycling Carbon fixation Calvin cycle Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 10496.9798 13780.1005 10447.1223 4267.191 7786.6739 3444.9539 7333.6459 2745.7135 66096.2135 5193.0342 11999.6597 7909.4283 7803.1938 7803.1938 259606.6358 5931.7848 5578.1806 4098.5503 11655.6557 4397.1672 2861.2907 8862.6297 2853.302 10532.7616 5351.617 7203.8758 2730.1508 3313.0897 172348.5973 325948945 alkk Organic Remediation Others NA Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 4657.5162 10380.2143 3884.3307 12398.6426 6323.5154 2479.9975 8821.4926 5884.6538 3061.9399 292814707 pcag Organic Remediation Aromatics Other aromatics Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 7036.2201 296112630 FBPase Carbon Cycling Carbon fixation Calvin cycle Moraxella catarrhalis RH4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella;species:Moraxella catarrhalis; 16895.244 683587.4216 3464.8183 4565.0722 5767.8335 2261.7957 5079.0374 254029505 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4939.1156 5731.9525 4768.7533 5551.5855 2603.1792 2357.037 293605176 catb Organic Remediation Aromatics BTEX and related aromatics Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 8990.6821 3793.5873 2164.345 2164.345 4065.5054 4829.4062 4808.0372 4634.6898 5983.7059 325841299 cda Carbon Cycling Carbon degradation Starch Turicibacter sp. HGF1 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter; 18111.3101 6298.8842 296426543 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 31951.7524 15722312 mer Metal Homeostasis Mercury Detoxification Plasmid pSB102 5578.2503 8033.0787 2312.145 3230.74 63613.036 3243.1981 6239.4794 4951.0398 3863.592 6035.2845 5168.1322 2883.5464 5388.7094 1946.5794 3989.994 3226.9884 288897230 sqr Sulfur Sulfide Oxidation NA Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 3994.103 3484.7563 29977.3938 2388.4472 2388.4472 4848.0283 3504.5452 4720.9484 1774.1774 112821599 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5824.5145 37084.9985 5245.8682 3608.074 3512.6496 2531.5212 7180.0336 4562.4042 2876.9205 3668.9607 4861.3483 5604.8305 10061.9219 10061.9219 7656.761 8900.8944 6260.2356 3511.5818 8487.441 3107.7583 11287.8396 11769.54 9392.6466 3224.3673 3749.9085 5117.368 3397.6571 150842 gdh Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas; 11987.2876 10733.1538 76176.2419 5616.7894 8693.9837 5158.274 5158.274 6969.5504 13818.3784 5308.4307 3023.2451 355334134 catechol_b Organic Remediation Aromatics Other aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 11906.8855 9091.8853 2820.1061 6438.1614 3335.2411 7971.4358 85767.7966 5835.0965 4528.9393 11650.1205 4573.6443 7439.2297 4551.0047 6943.4494 3692.9595 2816.526 6980.6429 3024.029 10886.7016 3657.3154 7272.5457 2971.5654 4209.0218 3973.8609 4307.3827 5820.3435 214037051 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6909.8708 19025.0131 3978.2427 10124.6035 2474.5283 3409.6529 3562.0504 15064.571 2915.4843 359426349 tfda Organic Remediation Aromatics Chlorinated aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 8101.118 4651.6564 5770.1011 5185.6615 5663.3903 1716.6512 340030443 arsc Metal Homeostasis Arsenic Detoxification Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 5590.0453 8435.306 5382.6057 6293.3305 3056.6427 29825.8781 2557.8992 5452.5914 3717.1741 14886.0886 14886.0886 4981.8976 6211.7955 4086.907 1865.4386 88027.9328 222438302 dehh109 Organic Remediation Chlorinated solvents NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 4773.1156 3032.1028 238603839 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 5418.3636 45747.6117 7129.2294 375254724 amyA Carbon Cycling Carbon degradation Starch Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 7209.8233 7961.8335 1998.3779 173128.1703 6504.7129 3634.1843 2687.2067 4234.2359 5004.6172 1936.4366 2531.6654 359791693 xylanase Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 10717.6835 42649.6815 2749.7911 580570.9989 6046.6729 8930.2513 6069.9643 6069.9643 4142.9759 4171.565 4330.2617 4751.0455 5094.742 2126.3547 4913.8775 2377.1876 7656.0572 5146.6135 4990.6625 2423.8232 38348.8929 86137338 soxY Sulfur Sulfur Oxidation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5542.5795 2387.9345 4920.06 5566.5548 5622.2144 91276.8272 4250.988 6746.7229 4465.2736 10291.3007 8558.0573 8524.7436 5635.0555 4222.8738 3619.1285 9735.6833 3271.8234 15166.0132 8727.5737 9228.1224 5213.0933 5043.708 6882.4649 3734.6694 11179.8479 70987070 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 5362.4953 2950.396 3390.036 3663.7234 20763.4456 6597.412 3619.8218 14977.41 2644.5793 8635.606 3351.7384 15551.2369 5321.2513 2281.1517 4972.3065 3857.1495 197314900 endoglucanase Carbon Cycling Carbon degradation Cellulose Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 19849.6462 7640.5583 262316390 phytase Phosphorus Phytic acid hydrolysis NA Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 11505.7556 5299.5467 1572.5042 395428584 terc Metal Homeostasis Tellurium Detoxification Bartonella tamiae Th307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tamiae; 10513.7431 47929.496 5749.2089 26271.6235 3773.3015 20286.7609 16143.7025 7192.5257 305300.0057 16028.3405 35603.73 26450.5535 16859.1161 16859.1161 8638.1421 19015.2847 11781.3705 5309.281 6194.707 6790.111 17668.9809 23071.4502 44474.2901 38545.3466 22744.0091 21225.6772 13597.4518 9653.3024 47460.3698 5985.7155 189206760 chnb Organic Remediation Other Hydrocarbons NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4385.3048 1989.756 2666.5979 3943.0366 3127.6561 127578.0755 6954.3499 5987.354 2350.3322 2350.3322 4422.8368 6325.3626 4549.9575 4726.9611 4337.5835 7640.6507 2266.8137 6980.8022 2127.3098 9785.6682 5870.0352 2276.2853 3095.6052 3965.032 2664.8692 5361.7651 91807180 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6423.6275 3665.5505 5405.0883 4998.4927 2684.647 253998188 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylovorus glucosetrophus SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 3828.8467 2225.1799 3402.6194 2171.5272 8525.9597 2506.8539 225574172 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 26385.1786 5833.1044 3583.7285 5847.3566 2699.1718 1631.7504 3479.3985 2241.5425 4951.1452 312133859 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. longum BBMN68 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 12779.0222 4635.4784 3887.1145 3887.1145 2873.1444 7141.5868 3249.7937 8901.7865 15511.7904 5376.642 9159.7515 3005.0919 4269.9031 5380.8994 315607104 RgaE Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 6418.8594 14664.1321 38844.115 4074.2949 1868.2182 1868.2182 2702.4308 3956.7469 2011.5739 3401.1143 226305600 atzb Organic Remediation Herbicides related compound NA Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 6212.0139 16460.744 4273.0245 3978.8986 2879.107 4750.0397 295426149 amyx Carbon Cycling Carbon degradation Starch Lactobacillus amylolyticus DSM 11664 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylolyticus; 4417.7836 3130.2469 4959.0581 2962.7683 4300.7694 4539.8418 92576.7812 4111.1331 2954.4157 7285.2789 3329.4184 4013.0918 5015.7622 9202.4751 2203.9162 6760.74 2619.6216 9303.9007 5405.1476 1793.5401 3414.2787 3878.0435 3056.3606 8883.1417 304309770 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4643.6344 10197.6765 7521.3499 6003.814 3055.2534 333482933 cysJ Sulfur Reduction NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4809.6756 269306549 nfsa_2 Organic Remediation Aromatics Nitoaromatics Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 13459.7689 3139.9122 3264.6458 65443.5571 6469.2609 3959.1346 3508.1606 9054.3253 4359.8668 6315.2322 4243.8455 2173.6543 4698.5058 6895.8304 2551.5848 64123.3296 8084.279 3181.1065 3184.7873 5356.259 269218847 nitro Organic Remediation Others NA Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 18440.2169 4546.7484 2968.5764 2756.1967 7510.1268 66475.2061 3283.4127 2507.9947 2507.9947 2778.3962 6444.0653 8519.1955 4904.9823 2929.4827 9494.4382 5343.0294 8550.9671 1888.7329 3460.7509 3311.2953 384429921 linb Organic Remediation Pesticides related compound NA Xanthomonas campestris pv. raphani 756C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 9836.3174 3486.5397 3339.5841 3158.3669 7916.3992 3939.9359 7425.9986 4736.1319 2301.2959 2301.2959 8845.8279 3434.0468 8269.0102 2762.8247 2563.6451 7255.0008 2956.1231 10976.6554 2500.3217 4778.2801 5330.8887 3058.8202 5058.8352 167946204 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 22373.4912 300539659 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 16005.145 9488.8841 2704.6409 386381246 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 5231.2493 15484.4862 7604.4701 10070.4945 2501.0952 91666.2765 4564.703 4513.7548 14748.3563 4947.7014 4947.7014 6159.3337 3571.6867 2097.1958 2532.5639 10093.3585 16280.2317 6723.0266 9138.3632 3060.6214 4308.1373 4479.2259 164375125 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15645.0965 2510.6212 47579.5202 4879.2712 6731.5848 3701.4232 94891.084 5273.7192 6682.9599 9359.8501 5505.8743 5505.8743 6749.7386 8167.1031 5106.1413 6490.3169 7685.2377 6743.6743 7800.5343 5565.8232 7892.9145 33474.7837 47254.0683 10542.8229 6883.2374 4778.0642 19342.2952 11820.7994 3756.2732 7957.7315 159881739 fccab Sulfur Sulfide Oxidation NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 12938.2905 18764.4054 24443.4028 4963.124 8446.8335 3793.7328 1728.4352 20142116 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6816.6766 5535.3108 2099.176 337289712 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans BR-AD22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 5372.4685 188535493 alginase Carbon Cycling Carbon degradation Alginate Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 6018.5243 6755.8722 4787.8389 5884.8402 36910.7845 365417946 B_lactamase_A Virulence Antibiotic resistance Degradation Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5059.7594 32634.5671 12327.6408 3066.952 6692.6119 96224.3109 4812.2505 4526.425 6209.1091 4089.3114 4089.3114 11097.2615 5774.1659 5553.3029 12056.1393 13716.9098 8726.5366 7811.8286 3254.2306 4435.7918 5984.8107 5830.106 114800199 badh Organic Remediation Aromatics Other aromatics Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 5268.141 2764.245 297152451 tehb Metal Homeostasis Tellurium Detoxification Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 6396.2632 2842.3832 3620.7334 2077.0314 2077.0314 22360.3132 4307.642 6741.8767 2796.0948 223586020 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8201.3532 93354115 xylj Organic Remediation Aromatics BTEX and related aromatics Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 276251.3208 4179.8314 2220.1784 3754.6224 6345.1126 12993.2583 89136.9459 9843.4077 9832.2603 22366.2746 22366.2746 2947.4732 9702.3385 9949.9963 6132.4511 9748.1466 9034.8079 3527.6119 11461.8385 7320.1934 6126.4349 17600.5636 10402.6086 7526.9711 4160.6865 6506.5899 44579.2897 3841.0455 6927.7827 118171154 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6462.3116 8553.3154 3163.8849 3097.4801 3258.304 2715.5076 6509.0792 3820.6989 5150.9177 4079.8423 3088.5469 7305.2801 10636.0024 5255.8259 2464.5143 3127.3672 2286.1117 119459854 TIM Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5686.2693 4487.8449 2460.7466 2955.5359 4883.4092 330998929 arra Metal Homeostasis Arsenic Detoxification Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 9424.6199 6988.7221 4895.6005 17083.2173 3749.7576 5717.6806 9203.0084 5040.1339 9536.0271 9536.0271 2799.8446 2282.9253 6585.6411 9572.6847 8369.0402 13482.5456 5664.8088 7232.842 8998.9465 11377.9787 4390.9643 2714.6919 8602.9712 408780487 linb Organic Remediation Pesticides related compound NA Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 4442.42 7341.537 43305.7243 14772.8684 3250.989 5717.8919 19511.8787 9072.0031 100226.2841 7438.4001 7721.4309 10132.0402 3275.4406 3275.4406 6423.0644 21587.5664 11481.5837 16314.3725 9575.9933 51076.533 26507.5767 17102.2816 17897.9758 18818.6043 21547.7961 15276.9068 20733.1755 6276.9309 8819.6608 13619.1777 4320.9542 5932.6568 170027525 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5629.6926 2564.6638 5382.8334 43761.1912 3525.9222 11539.4811 20310.9154 5304.5025 4958.0158 2078821.4196 161166644 amyA Carbon Cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 6854.6966 3444.7805 4648.4959 19102.2134 10220.6463 4939.923 4939.923 14202.5893 10034.8471 5090.4848 3401.7375 3959.4011 4386.2382 8630.614 4863.6056 2867.0332 2461.2844 10612.6285 311031010 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4152.812 2135.8314 3617.0761 2590.3573 5394.171 12233.5082 1940.7509 3825.9999 196478297 ppx Phosphorus Polyphosphate degradation NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 11532.8878 41071.4371 22712.3869 5873.5949 6541.0428 3128.6684 5114.1931 3592.5466 196260.364 7571.7372 9767.2599 20162.9358 12269.9742 12269.9742 2737.1437 6834.7332 10305.5207 5463.9655 18872.6757 3639.1725 17057.5067 11703.1901 13892.098 4355.8573 6826.6195 5149.5033 2328.1636 251788465 Sir Sulfur sulfite reduction NA Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 6626.8286 6740.8617 331022824 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 6376.2522 2692.5639 3303.5688 2023.2677 2023.2677 5919.1164 68304958 dsra Sulfur sulfite reduction NA uncultured bacterium BAC13K9BAC superkingdom:Bacteria; 4286.2998 7630.4844 4269.9885 2244.1065 145223.1454 3647.1457 3285.2813 6331.8276 3905.2072 6423.7228 6262.1661 6083.9219 6658.1373 10372.1705 3561.8245 4687.2317 2753.7573 6118.4041 2500.985 5497.5029 301154661 norb Nitrogen Denitrification NA Haemophilus parainfluenzae T3T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 7106.3473 189336537 ophc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 5598.1165 138342.8109 3539.6269 695010.2684 18916.8278 7213.2038 2684.6876 8245.6249 4974.0237 4634.9202 3624.3625 12257.7255 2109.779 88808846 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4243.8556 12163.7 11392.226 3544.1194 7367.223 19800.8944 165275.1665 5100.2967 4362.954 5008.6373 3062.0023 3062.0023 6142.6579 7025.3404 4949.9465 12639.3474 14425.8114 5910.3811 4749.9889 17336.0245 3546.8577 4763.193 5381.0464 6245.3882 3237.1027 6305.8208 218545593 alkk Organic Remediation Others NA Bacillus cereus G9842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 4981.5758 5235.9572 356641489 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 4738.3646 10491.4163 389939812 catechol Organic Remediation Aromatics Other aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 11569.5668 8300.5405 6486.7186 13798.4707 8370.2827 6625.2273 3669.8266 111868.2483 6152.5116 6704.4151 4071.3072 3456.5551 3456.5551 4322.7118 12929.2464 12968.8302 2165.3748 7103.5681 16709.0943 6653.4102 53227.429 12489.6002 12454.5166 4914.7373 7060.8628 23834.0042 3777.6222 239937402 alginase Carbon Cycling Carbon degradation Alginate Vibrio sp. A9m superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4849.5201 309311742 glx Carbon Cycling Carbon degradation Lignin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 8538.151 3980.1064 15791.3149 11415.9414 11415.9414 9354.3154 5933.458 7198.6588 8090.7075 2649.837 10839.2316 5177.3757 7359.769 3378.2805 4966.1027 2565.5086 114187624 rgl Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5807.0189 10400.5561 358071669 pcpe Organic Remediation Herbicides related compound NA Burkholderia cenocepacia H111 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 11189.3045 4389.2168 2661.9041 2661.9041 2628.6825 2177.5869 8485.4229 2925.7586 323471257 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 8546.2853 8054.9193 4271.7226 56798863 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5214.6167 101085.2501 407803968 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 11002.2762 8706.8204 2470.7726 2210.7174 2210.7174 6010.2414 15538.989 42023.3207 3049.9726 6608.0481 2176.4885 2800.474 257077346 mer Metal Homeostasis Mercury Detoxification Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 7784.8929 3890.3413 4678.8181 3924.8426 3924.8426 7309.7815 8942.0107 4069.4381 2491.3908 85463.2805 152992009 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 29658.2633 2177.9262 2676.6938 78087.0404 5766.0732 11329.5917 3567.7034 3567.7034 2610.3779 6373.9784 4015.7017 3600.8845 4647.1794 9876.3731 3689.5799 3900.7911 6239.7822 2777.3592 12525.5579 4847.5545 7008.7661 1867.6545 5053.2367 4591.9947 2254.9991 298482096 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 8345.0627 25545.3925 374419303 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 4040.6428 6146.6665 5339.0763 4581.5052 3044.4951 4889.9736 4454.9561 3077.6901 505119.2151 5421.8764 3283.6387 9187.0273 5254.1468 5974.8476 16148.1528 5889.7877 2607.4099 8426.5615 19105.6834 11443.0565 7727.2879 4533.3084 6849.8163 6984.8207 2483.7715 12051.8262 189188560 endochitinase Carbon Cycling Carbon degradation Chitin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7729.6755 101234.2869 6494.7104 6031.7351 3673.1948 4019.6761 119398733 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 4841.1715 3740.9526 3571.921 9703.7662 3134.4738 3134.4738 4381.3031 5400.1591 3534.1718 2530.1625 289768508 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 7302.005 10824.0838 6824.2717 6824.2717 9561.7296 4534.9191 4862.7296 6060.1653 7667.0574 7583.0814 5648.0587 6421.6542 3942.663 11591.551 357045266 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 9530.7043 7317.2988 84058.2558 4479.4843 6946.6223 4334.5698 238761392 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 3985.1959 5851.1129 5374.5237 5006.0912 2227.202 7205.9283 29395.596 3272.9367 3245.3208 4372.048 355336205 xylm Organic Remediation Aromatics BTEX and related aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 58602.2121 3191.2413 6115.1141 2050.8022 5255.6001 330836466 amyA Carbon Cycling Carbon degradation Starch Sphaerochaeta coccoides DSM 17374 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 14550.6233 9878.9141 5437.399 3316.5817 9083.4436 6892.56 67615.0885 7559.7805 4123.1824 4584.1341 6624.352 6624.352 3466.7422 10798.1588 5337.1035 17277.6864 3135.9639 4992.3727 7274.8655 6203.9549 15514.7119 6242.4035 15302.0093 5712.7871 4206.2104 5073.6931 5323.4584 9704.4051 384040819 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 13433.8684 5744.2734 1938.7285 374374271 rgl Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 4428.8214 44731.8013 16050.2558 4899.2349 7634.4017 108632.0264 5596.9624 3883.7791 4776.3218 3250.1504 3250.1504 7581.3189 3799.359 2531.3561 11017.3186 3110.4179 10647.6641 11581.1365 7351.5245 4126.6011 4050.0369 262274525 endochitinase Carbon Cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 89328.1174 5027.8386 91726.4615 4773.2605 4773.2605 8427.1042 12095.4773 9158.4282 5413.415 353207564 SoxC Sulfur Sulfur Oxidation NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 5664.0388 334281.2623 2460.4384 8883.3921 3445.5995 11727.3885 6814.3506 4249.9167 19564.5614 14278.3908 6324.9154 6324.9154 6949.783 18562.9019 6540.0184 5760.9853 24989.3512 10700.9686 7490.2087 5223.1139 10479.1378 5755.2553 29224.3203 15544.6838 12696.3232 4541.8981 5034.8169 8019.7078 13830.6067 78365391 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 5623.7549 3856.6752 9534.5547 4569.5788 389819777 nitrilase Organic Remediation Aromatics Other aromatics Planococcus antarcticus DSM 14505 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus antarcticus; 5305.5492 9431.9318 7919.467 2970.4484 5264.6388 4092.3402 3138.4766 316915550 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium sp. 12_1_47BFAA superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 4043.5044 6196.0438 4840.6166 3519.8668 105633.4714 6500.1906 3929.5938 2007.0357 2007.0357 16139.8686 6153.2044 3601.9321 4094.8411 5310.9638 6750.3009 8329.5352 3814.1 9584.695 4316.9564 2369.1334 7306.7682 18651922 rubisco Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magnetotacticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 4192.0116 2212.7807 302547584 one_ring_23diox Organic Remediation Aromatics Other aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 5621.36 11966.7167 6265.0945 7273.0657 3576.8593 63236.5051 3586.9022 6223.1749 3706.5588 3706.5588 3213.6785 5543.1935 4762.6363 35489.4641 4911.531 340524861 chitinase Carbon Cycling Carbon degradation Chitin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 11519.4643 2368.9813 9101.8283 2279.9445 2279.9445 6544.6925 63512.2915 175343.6286 6026.6646 2748.6213 3720.1721 229447779 pula Carbon Cycling Carbon degradation Starch Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 263537.388 388277440 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4901.0713 98537.9007 6229.8474 7370.7395 226316856 cellobiase Carbon Cycling Carbon degradation Cellulose Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 12667.6868 4403.785 67306.083 3533.5051 6147.9766 3694.3555 3694.3555 25146.3902 3932.1834 2151.704 5511.9636 2770.39 4222.7221 4825.3274 2379.926 4208.1289 3412.8613 384258521 amyA Carbon Cycling Carbon degradation Starch Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 4325.6453 85719234 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6826.3042 2779.0349 6708.6855 2808.6253 5370.2312 17282.4474 256396075 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 130013.8182 43418.4292 7823.6761 4566.3728 3626.3872 12089.4371 3231.1068 103258.9056 7614.0953 8058.1491 12222.0458 6670.3642 6670.3642 3426.1158 11914.7586 6346.497 4789.8773 3752.6711 13342.9387 2336.6856 12000.5735 12154.133 11923.2654 4332.4435 5721.6486 4430.4227 112463337 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 280561.9293 6003.9096 9355.2418 2784.2879 3949.5032 5246.9457 5246.9457 3521.1812 13295.6424 2222.3956 4265.2255 260062451 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 4363.3351 15310.59 7996.1983 149358171 mer Metal Homeostasis Mercury Detoxification Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 4918.8648 11532.7256 4585.8885 3427.1502 1901.913 1901.913 5939.3852 388434292 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 6447.3793 42265.7758 2694.0181 7754.8572 1786.6864 2200.8135 5798.0062 239994703 RgaE Carbon Cycling Carbon degradation Pectin Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7383.1959 2421.5996 19636.333 32470880 narb Nitrogen Assimilatory N reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 4549.7405 11026.7065 2282.9036 32153.5216 2516.303 2516.303 3996.6787 7008.4428 5764.725 5019.1067 1702.8754 2543.127 5279.0191 387815237 alkj Organic Remediation Other Hydrocarbons NA Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 4975.1625 2252.7091 5429.3761 64129.8202 4404.6533 2136.7191 2136.7191 2620.3041 9394.2482 6251.8222 4675.3297 8273.6865 2597.1088 3084.7585 9055.7308 2543.2109 11702.0277 5725.0807 8077.9665 3031.4111 2868.7628 2669.6949 4585.9141 211957901 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 4298.1838 29114.1389 3576.0941 7562.2166 74419.1249 5857.3639 4092.3414 4049.2905 7169.2392 5185.0379 259417099 arsc Metal Homeostasis Arsenic Detoxification Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 7529.2227 5640.6055 4714.6555 2599.8805 2420.5507 2420.5507 4827.9871 3769.6125 4589.2926 2413.7866 2877.4215 74058090 FBPase Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 5992.7455 14860.8088 665395.9265 8342.1946 7277.7869 7277.7869 6403.2377 4796.8925 4480.4975 290878624 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 4509.6889 4212.3744 4839.2299 3290.9781 5000.7389 61618.2259 4219.2477 2761.4062 11051.6357 5948.81 4724.3213 4097.26 2220.4428 3072.3704 7174.5315 5365.2704 14006.3084 5701.7354 13833.6665 3191.3856 5217.413 3828.3944 3469.3726 5959.2301 119498803 endochitinase Carbon Cycling Carbon degradation Chitin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5838.8079 2485.4584 386822692 amyA Carbon Cycling Carbon degradation Starch Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 4528.952 11151.9642 3691.9189 105385.7614 5085.5683 5704.2283 4904.1599 13071.9422 4864.0054 3673.737 26953.0699 13963.1394 9560.9809 3314.4632 5570.7878 7325.7962 346310855 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 5171.6003 19776.0387 3894.4976 10213.079 4136.9678 6477.0632 3691.1176 93262.4161 6929.5984 3360.8583 3360.8583 3441.1303 7593.1858 5044.469 5102.7079 5279.4907 9262.2667 3228.05 2909.5392 8234.1166 3533.8641 10929.8436 3988.7704 8029.1311 3877.0886 3342.6317 3973.4905 6182.7938 389876299 linb Organic Remediation Pesticides related compound NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 4615.9939 8785.0594 40253090 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 39012.8477 333921415 nirb Nitrogen Assimilatory N reduction NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 4380.6788 2953.1776 3332.8844 2231.9704 6021.9325 5067.9329 93517.7503 5187.015 4608.7795 2159.3401 2159.3401 3272.7941 9983.5677 3931.5933 35582.2415 5684.0807 4426.2635 2721.736 3888.4057 17486.0546 2408.4637 16636.6498 7967.5211 3122.9184 3943.9977 6509.6726 3730.6135 7398.0457 304393223 rd Organic Remediation Chlorinated solvents NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 7587.0933 14722.9083 7333.048 6887.7724 5088.2111 3037.4526 66597.7496 5249.0456 5160.9309 4474.7812 53770.7618 53770.7618 3027.3181 4437.9879 2959.3349 3241.6085 16132.4025 2247.7194 9599.3568 7061.4544 10530.1282 4540.3918 4541.0042 7949.7819 119416759 phenol_oxidase Carbon Cycling Carbon degradation Lignin Funalia trogii superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 15790.3863 47578.9896 29549.7462 2838.1764 10888.7457 4604.8594 6572.1801 5743.1053 165653.6593 9196.9315 72659.052 16415.9159 9195.9447 9195.9447 7617.6926 7777.6126 11429.979 4619.0413 6976.383 2138.8766 7944.0142 28204.4065 6071.7452 33083.4671 25060.7933 28967.5891 9475.1809 9797.3029 5762.7575 7619.4284 18567.7625 209900680 terc Metal Homeostasis Tellurium Detoxification Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 91843.5024 2555.3287 3490.5283 4445.1453 2988.2121 62379.9805 6148.0052 4614.3985 4873.2061 10645.9105 6195.9208 4172.7692 9667.609 11857.2008 2903.8466 6815.6569 15833.8016 12648.1924 4710.5037 8070.935 4768.9018 3557.9392 4223.4658 2506.8462 13678.6205 377521741 catb Organic Remediation Aromatics BTEX and related aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 13664.0723 6851.569 8837.6361 4055.3625 11287.434 22605.0508 4522.0228 228491.8452 6545.4673 11322.4196 4126.3722 4577.7337 4577.7337 3988.537 12867.0337 6922.3222 7795.6455 7085.0997 10342.9229 4042.1483 3894.9923 19941.1331 5007.5206 15473.1439 14198.5786 10314.1107 5716.3626 16339.0459 12825.0908 6275.574 61198.7707 193888336 thmAB Organic Remediation Others NA Rhodococcus sp. YYL superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6318.7043 2437.9637 6815.5858 2724.6098 2724.6098 15196.0433 167753.0546 4344.5294 1971.691 223558039 xylanase Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium URE4 superkingdom:Bacteria; 10307.2579 5985.0545 14686.0121 2005.3372 3142.7355 17959.9208 86005.0968 5979.8885 30801.3425 2313.7117 2313.7117 3279.4175 9141.7021 6044.6445 3976.1586 3085.5034 4859.1857 5364.4579 10242.9797 4121.2357 4932.0883 2402.0181 2880.2988 4519.1446 3447.9053 15549.3557 386380474 ppx Phosphorus Polyphosphate degradation NA Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 6376.8327 119188781 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 4743.8026 78220729 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 3946.3447 237858265 GAPDH_Parabasalia Other Phylogenetic NA Stephanonympha sp. CcStG14 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Stephanonympha; 10487.2477 3360.8791 3132.8316 9218.974 5633.0043 5633.0043 7557.6006 3536.1306 6000.4156 2482.1431 2777.8962 9699.1244 3689.2508 5212.2839 2750.9681 2785.1031 4346.3718 16760.0037 227199502 amyA Carbon Cycling Carbon degradation Starch Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 4991.4318 24634.9548 5419.7905 2804.5218 2804.5218 2277.7066 2730.6955 3829.7838 281405325 pme Carbon Cycling Carbon degradation Pectin Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 98445.5437 2586.0008 3686.9839 15510.5922 7694.6451 1995.1203 166408392 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5174.4004 3225.6858 7615.0205 3643.611 3854.8462 4444.4483 2428.7655 171507.1459 7151.5659 5970.1759 15914.0323 5767.2167 5767.2167 2840.7612 7700.3311 4084.9341 5984.7763 5477.3284 4530.5261 2667.6043 8970.6094 9482.2643 4577.6394 9135.5758 2747.3631 3235.8036 5002.5118 2119.8677 5572.5315 194292765 narg Nitrogen Denitrification NA Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 5451.4328 8913.4158 5514.3956 2684.0009 9170.4035 4068.5629 8566.9598 5159.6413 241399.9103 7113.191 4555.9404 5771.8981 4404.3406 4404.3406 3473.9533 10980.1659 6978.8366 3579.4179 4920.2574 2647.8197 3010.7158 7595.0829 4824.5775 10683.5571 5450.6882 7054.8732 3884.7332 3687.4788 96195.5997 3549.3547 5381.7172 154245725 exaa(moxf) Organic Remediation Chlorinated solvents NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 291230.5 4603.0275 9545.5194 30016.3538 11271.0223 14947.4913 8735.8131 160917474 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13040.6968 4591.8571 320451159 fccab Sulfur Sulfide Oxidation NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 6840.6531 2942.7243 3883.6161 6814.6249 3896.5845 9165.7071 4509.9814 2933.1475 2933.1475 4497.4567 7067.6167 3890.0942 5796.543 2523.1688 2960.2369 5481.9934 5152.8527 2528.9693 4336.7567 3744.9713 2591.5085 211593329 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 4448.9079 322437092 RgaE Carbon Cycling Carbon degradation Pectin Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 8202.0916 111026996 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 3957.387 3548.7978 2911.4958 70500.8118 6316.1075 2537.4661 2537.4661 8047.4686 5873.123 4817.8524 3377.6849 3062.7203 6155.3745 11806.062 7915.6915 4873.4462 5456.0606 3169.9243 3598.3331 11003.1029 195977915 pula Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 4154.0599 2441.2133 3973.8756 4602.545 6466.764 2069.1378 6141.2634 239506663 amyA Carbon Cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 8218.2506 337749866 rgh Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5159.886 22706.587 6577.1911 10122.2366 5494.4481 6119.6355 173152.0506 4590.5705 17284.4905 6561.8579 4690.6637 4690.6637 7777.6429 13751.7062 8954.4397 11118.8122 4845.0812 2701.3401 3044.8726 10286.3455 46441.0185 13938.432 3741.1176 12651.4898 1798.1059 3502.2215 9342.8096 2422.4053 16027.7625 154492575 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 5768.3254 2463.096 3833.4937 3833.4937 3157622 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 285154.581 30516.1939 2648.7971 3678.5362 71352.8421 11774.1373 3188.9883 3188.9883 4452.779 9741.1045 5345.0529 7116.6714 3000.9492 5343.265 13668.482 5578.2579 40711.3104 5256.289 4630.2037 6434.1077 3212.1811 18034347 dsra Sulfur sulfite reduction NA Desulfobulbus elongatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 5888.1018 20204.1037 11063.4332 33930.077 3339.7637 6873.7966 3367.7539 5319.1247 78408.808 4417.3883 5346.422 4595.4672 2505.5358 2505.5358 2904.9991 10224.0081 5788.95 5245.7711 4306.3484 3387.6842 17790.7003 2640.1519 24022.4575 8499.9569 20342.3511 5290.9956 5229.0692 3401.5271 114799867 amyA Carbon Cycling Carbon degradation Starch Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 4623.1909 118472848 beta_agarase Carbon Cycling Carbon degradation Agar Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 15256.7123 260062880 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 8823.1469 15099.8363 16863.044 2233.7605 5891.5143 13066.8494 4993.6765 74345.979 15342.7738 4739.7086 2948.7282 2948.7282 6079.4486 29540.261 4661.4498 7015.1023 17784.5446 4479.6883 2008.7691 2588.5075 20141.5072 312130581 alginase Carbon Cycling Carbon degradation Alginate Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 4882.0255 4003.0822 5168.2693 111024845 dxna Organic Remediation Aromatics Heterocyclic aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4060.8746 4522.0998 7251.2229 93356798 poba Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 4900.7281 10283.7526 10089.794 4518.3003 2111.8506 2111.8506 6784.6271 7730.5021 4437.8442 5847.8686 2055.0736 2586.4538 4378.0535 333894317 ppx Phosphorus Polyphosphate degradation NA Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 5028.1667 10518.6542 5146.6182 4021.1683 3638.1077 3111.2171 3065.514 19526735 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7143.6041 1841.6233 2251.2006 2077.5534 2077.5534 3386.8228 6850.0468 5231.8015 4164.6849 4688.556 1733.5033 2694.7606 2960.2265 148503291 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 5227.1725 4358.064 357039145 dsrB Sulfur sulfite reduction NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 4028.132 2169.5329 4545.737 13404.6024 64278.1167 3811.1995 2500.9381 2500.9381 2496.3215 5630.8043 383441.7622 4495.6417 2316.7421 7113.5832 6911.5756 84140.4114 24556.1546 8587.4769 1679.4995 2530.188 3826.1683 169772253 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 7143.0208 16723.2704 2573.4698 4029.2853 81777.9111 3921.6705 27372.6995 11344.9386 15379.4318 2446.055 35819.2237 8862.2535 238577397 cutinase Carbon Cycling Carbon degradation Cutin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 62754.1913 35996.0541 3394.0576 2343.0812 2343.0812 10427.9863 3889.2048 7798.6013 6014.9706 8162.1127 2385.0387 106762431 amyA Carbon Cycling Carbon degradation Starch Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 3896.7467 3300.8465 4163.0477 158441181 cda Carbon Cycling Carbon degradation Starch Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 8956.275 33175.666 11961.3355 6918.3704 48638.6973 17148.3226 2416.7883 5768.1157 402843515 xylj Organic Remediation Aromatics BTEX and related aromatics Klebsiella sp. OBRC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 8443.5318 3020.5508 5915.3149 5248.4696 3110.7479 3110.7479 5608.9805 3571.8234 5208.4137 8749.32 2805.3601 11103.7113 5185.6734 319427495 cysJ Sulfur Reduction NA Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 34508.2007 1984.2921 11270.8986 3754.2946 7556.5443 5236.476 22575.1383 302881452 phospholipase_B_fungi virulence degradation NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 5930.1617 3371.3874 3259.9022 4963.2067 5672.317 5492.4932 3472.432 2469.2058 5580.5998 219542477 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 5360.654 8922.9026 4591.7168 8708.2313 2737.0406 2737.0406 7367.42 9137.9053 2778.4752 8374.8185 6980.6908 4910.3114 6025.5037 8339.8167 270265101 amyA Carbon Cycling Carbon degradation Starch Serratia odorifera 4Rx13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 5448.2277 8380.0985 8542.5797 4791.3938 65633.9135 3286.5917 3250.9821 2335.1533 2335.1533 3210.5127 6642.227 3326.8508 4265.5674 2223.2365 4566.3077 7116.7376 8035.5132 6065.0888 2066.2859 2387.9196 4561.87 4347.3657 359684984 chitinase Carbon Cycling Carbon degradation Chitin Leptospira santarosai str. 2000030832 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 6269.0604 4320.0958 5612.8815 2581.4518 4629.4482 3514.0539 5036.3831 6300.1422 54778373 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 12396.1849 39613.078 5541.7509 3274.4256 3274.4256 3685.89 1802.0748 343764794 cysJ Sulfur Reduction NA Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 6831.613 7718.9605 2484.0255 4284.8384 115401052 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 10031.3584 9201.435 6137.4156 12178.0156 4367.7748 6284.4446 2753.9233 6571.9111 8886.2473 4957.6804 7134.9483 2503.917 2873.0903 2995.7654 299782762 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus fermentum CECT 5716 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 11973.9132 11339.5039 22914.8095 4423.4565 254788238 mannanase Carbon Cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 13252.2945 38645.3077 25406.7193 6445.9427 5309.0964 4364.3545 3206.9703 141911.5345 6630.7754 6522.0775 11695.8063 6733.1484 6733.1484 2574.0123 7907.4107 259480.307 4886.3648 5772.092 19540.71 4158.1298 18605.8714 15048.9944 15771.8915 5461.6616 5494.0072 344340989 soxY Sulfur Sulfur Oxidation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 4306.206 6799.1247 6336.6901 3112.7607 3152.8778 3684.2345 226356151 cda Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9307.3136 8032.7366 5072.2294 6765.5747 3338.2411 51182.52 2097.5787 2097.5787 3416.3763 4698.4275 2312.9629 12041.7841 9409.3815 4071.6814 6672.5122 2111.575 3788.4043 283442054 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 39881.796 145788.1188 219975.6752 7215.1067 104658.0456 14140.4792 22876.1501 9029.2592 150593.5577 38528.5769 49300.0329 30274.2355 12547.8597 12547.8597 24581.4132 46091.4912 70126.3344 3608.728 4947.0953 2196.7471 22832.2698 129442.6583 15516.3985 152685.1755 55536.8724 98115.0027 38761.8723 36889.6341 39925.9078 12721.9548 288864315 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 14446.9374 2887.4313 3591.8225 6474.1711 7747.973 100441.118 4160.2091 5037.5779 2208.7795 2208.7795 4859.0478 9094.8225 5202.677 6929.1609 9482.5949 13022.7105 4013.3206 7979.8489 3150.6073 13600.2453 6046.4288 7362.8774 7067.7747 4194.9673 5030.5075 2748.0035 8813.9845 336017508 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 19117.3806 14897.844 6830.6448 1922.8423 11908.1111 4882.081 7184.9235 9773.6132 4154.653 81416.2065 6073.5454 7417.3251 6988.0886 5495.8236 5495.8236 24355.5512 7015.7804 3903.5171 4330.269 7018.4366 9700.0593 3708.9228 17376.9069 8457.7476 17947.0723 2766.4302 5236.9395 4826.4753 2140.3866 227240453 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 5963.9076 2726.232 3753.783 12252.6216 4420.3561 3457.7223 8321.9726 3454.0483 12197.8719 7500.2182 6687.5834 6104.3552 4155.8353 5983.4019 2441.5031 6413.9632 84517008 hbh Organic Remediation Aromatics BTEX and related aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 4233.3114 9676.10935 5005.0408 5647.2776 10069.7867 4391.69665 4544.3681 4094.8618 7203.2294 10151.2281 2987.89555 2987.89555 3787.9638 10966.29885 4225.4622 5036.4506 2813.9826 3014.1381 3249.6423 11158.05645 6978.9062 6967.272 3442.95215 3963.16345 6401.8817 3174.2219 124265452 tktA Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 5761.0772 5441.6694 2860.7843 6942.6881 4733.4042 4700.8649 3215.0143 7301.4171 118579219 terc Metal Homeostasis Tellurium Detoxification Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 5147.0094 8598.9177 3878.5085 150167.9264 3852.168 5375.4246 6630.6437 3046.6925 3046.6925 2855.1531 6430.191 4202.2462 6817.6415 5540.7859 3068.5344 7258.1989 3050.43 9031.3321 6440.6339 7792.9888 3302.7703 4088.1104 3178.981 10938.5972 111609818 assa Organic Remediation Other Hydrocarbons NA sulfate-reducing bacterium AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7213.4032 28198.358 84778733 terc Metal Homeostasis Tellurium Detoxification Sodalis glossinidius str. 'morsitans' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Sodalis;species:Sodalis glossinidius; 5421.9912 8398.1042 3693.444 6291.1825 6479.2862 2719.0899 2289.0921 145240201 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6841.5485 8521.5612 3128.7292 10123.8368 14335.173 3112.627 2745.6255 5098.304 4260.9202 2480.9748 2480.9748 8530.1479 16590.3925 9641.3821 3926.7208 3337.1339 16964.4695 5411.4508 6737.5833 2601.6877 3115.3877 2912.0965 7150.7924 116199623 glucoamylase Carbon Cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 12615.364 18414.8772 9336.6874 2661.6903 66239.5767 7409.5402 5329.9384 5239.1577 4716.1273 112953.7474 7027.9431 5999.6568 10763.7533 6284.667 6284.667 4594.9259 7127.7334 5117.8799 5054.2957 6004.1125 8166.7445 10899.3334 126843.878 23540.5533 6670.3472 7000.6771 11073.0505 4750.1972 5129.2723 3406.3289 342320646 glx Carbon Cycling Carbon degradation Lignin Rhodotorula glutinis ATCC 204091 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Sporidiobolales;genus:Rhodotorula;species:Rhodotorula glutinis; 8568.1293 11144.1723 5058.0041 52166.9743 3797.5409 9760.8695 4857.378 3715.7009 7134.2403 2950.0771 7244.6234 8128.6996 4298.8685 8143.0938 3284.8273 6500.673 367472666 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4171.306 21433.2837 6367.3618 2647.0886 4165.6903 13633.3899 13633.3899 8247.2671 9821.014 5414.4726 7063.9213 3078.5602 2627.6469 284041630 endoglucanase Carbon Cycling Carbon degradation Cellulose Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 5377.4908 10936.2846 4097.6905 3906.7441 3906.7441 4675.9849 392968481 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 7869.8816 7845.3726 4064.788 3937.8212 2172.2902 2172.2902 6407.05 6410.6548 18959.2938 3221.4701 2733.8443 3315.0134 358242503 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 4991.359 9490.092 5342.1373 4380.2196 3260.6455 2240.9923 56401.3259 4427.0999 3206.5473 3206.5473 5626.3065 13072.0324 3445.8246 5328.261 4027.2512 5151.118 3646.4337 6472.3197 2903.8004 12351.7637 5441.142 6115.152 2214.7673 3407.4729 3826.6947 5068.2923 222149854 phn Organic Remediation Herbicides related compound NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 24128.7685 371718151 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 6248.4037 1940.8363 2544.5576 65138.0383 2984.8746 4900.765 6532.8207 13571.4455 115597.4991 2693.7698 5631.1246 15567.679 6181.1146 2601.7857 3171.5149 3275.2671 170111288 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 5078.87 13537.0357 4422.6504 3340.8871 4691.3788 79995.9026 5810.0474 2995.2714 6631.3182 5355.8581 2649.0807 2333.9702 9628.7891 4149.8237 7268.4321 2050.029 3182.4241 3370.0197 6251.6804 153998677 mcra Carbon Cycling Methane Methanogenesis Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 9681.1329 9856.7666 6863.286 6815.1878 3521.1605 3337.9411 131135.8778 131135.8778 5912.9031 3614.4842 21819.0887 3636.8743 2167.251 3870.5829 3702.6356 359732558 pcpe Organic Remediation Herbicides related compound NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 15664.0901 38824.9774 10708.5472 12281.9089 3604.7649 2634.3772 99582.9176 4437.7948 8569.0947 7207.9483 77887.1043 77887.1043 4397.3354 9935.9999 5558.012 12513.8382 4480.155 48737.1628 3472.65 14327.4436 9715.7099 10000.3877 6478.5755 5270.6019 3743.2303 2284.5069 320448245 pula Carbon Cycling Carbon degradation Starch Streptococcus equinus ATCC 9812 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 10601.0488 8032.561 5761.5921 5112.6607 13906.5161 20173.9907 6822.2802 6358.93 233019.73 23108.966 19451.934 16530.0186 16191.6261 16191.6261 13666.9948 6111.425 12094.9291 11417.8082 7319.3306 9206.2247 6556.6658 2024.8779 2911.9733 5941.2222 11594.2265 332882655 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 5084.5354 6166.1502 4077.9556 20149.7046 5227.5475 2069.0343 95110658 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 63374.1822 4654.6099 6230.3777 6230.3777 4802.9522 12562.3345 7537.9691 3970.7183 320107931 cda Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 28393.7894 16648.5019 13118.0203 1808.9483 1808.9483 6323.3032 5491.2066 3449.9222 422314403 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 362720.1887 10918.374 188514.1656 7058.2281 2419.279 2419.279 5657.3591 219747062 gdh Nitrogen Ammonification NA Ulva pertusa superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Ulvophyceae;order:Ulvales;family:Ulvaceae;genus:Ulva; 6010.7793 2916.7188 3846.7091 5061.4285 5218.7133 2707.9873 5494.7557 3040.7653 13898413 dsra Sulfur sulfite reduction NA uncultured napthalene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 65954.15 2466.9608 4179.2627 7361.5509 7435.5419 5505.2583 2459.22 4824.6788 76803737 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 8915.3483 3962.8794 3254.2468 326799586 amyA Carbon Cycling Carbon degradation Starch Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 6483.2137 3633.3628 10976.3846 10976.3846 3856.0432 198265763 dehh109 Organic Remediation Chlorinated solvents NA Octadecabacter arcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 6715.7951 21898.1423 3877.0126 3127.2926 2438.5399 4632.2121 4705.9425 4798.3598 2549.2082 2549.2082 3304.9476 7921.0145 7715.937 53840.0493 5612.5077 3608.9252 6933.0979 9222.1921 7814.3788 7884.2872 2743.0356 5906.612 9435.8672 2307.3681 214030093 PRI Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4518.9298 7689.9631 4800.9379 4754.2988 15725.6415 4744.0852 74421.8001 7175.5373 5876.05 3203.3024 3203.3024 2836.1227 8950.7395 6604.2591 5964.8111 5021.087 4082.7844 4290.6273 143444.745 3171.1077 19622.949 6070.2332 9763.2602 2942.3601 4962.4183 4505.6092 3557.5481 5181.9631 295057590 chitinase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3985.9651 2145.5943 37676759 chitinase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7227.7062 11242.9486 3289.8151 3297.8441 75991.7089 4761.7501 3869.2394 3591.7665 3591.7665 4238.1537 8138.2036 6441.5575 9368.5898 6374.6614 7062.5292 20775.2391 3891.1318 11149.7698 8510.2025 10499.9379 4206.6627 4231.991 3197.1966 363719072 phn Organic Remediation Herbicides related compound NA Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 12392.4173 18298.8648 11948.2152 4261.8928 14968.5325 2235.9523 4916.8205 9988.6313 4135.6144 129351.1771 7291.3739 7681.3423 11244.9925 4672.3955 4672.3955 6716.0002 9767.9444 10974.2838 31780.8027 4447 3379.0923 8160.8433 15599.0457 8265.5406 14579.8164 9091.1962 12850.6649 7332.6308 6246.089 7110.9609 4075.8587 1065659.3271 282854742 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes J139 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 4937.8474 7670.7691 3932.2965 2283.7912 13592.6392 3527.0626 5314.3427 3367.1569 91807.5342 5679.6321 5610.7679 10374.3903 5293.1935 5293.1935 3646.881 8787.7648 8365.81 7558.8583 2958.1576 4973.9621 6316.3676 4773.7909 11574.3379 7727.0255 10326.3417 5829.1572 5081.2791 7890.904 4711.3537 7717.402 84509013 cmci Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 4707.143 4267.132 61977.1189 3731.4986 2315.0159 8491.34 3910.2673 5472.4416 3125.6109 3436.0777 3019.0782 320123528 dsrB Sulfur sulfite reduction NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 4392.5554 3115.8687 84493.4854 8106.5983 22860.0747 3640.9889 3942.7639 9685.6472 10132.7859 5344.9934 3513.9989 6966.4933 242814941 arsm Metal Homeostasis Arsenic Detoxification Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 17333.8014 3018.3352 6965.6331 3170.227 6683.6482 6561867 amyA Carbon Cycling Carbon degradation Starch Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 7325.1524 70290.9503 18762.0447 6575.6068 7509.4119 4058.5338 5128.9839 101606.0794 10033.2243 7141.4436 9273.7734 8748.6891 8748.6891 4782.2922 7516.1267 10613.7006 33295.0967 5455.5243 2047.802 4489.6036 13576.3468 3350.8247 18178.2242 11485.5263 17640.6626 66671.9376 4965.4169 4414.1496 2536.9795 10889.9179 118728128 terc Metal Homeostasis Tellurium Detoxification Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 4912.8885 2728.0417 8731.1957 162455121 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 9579.6979 9566.3224 5460.2485 2949.5327 5755.6318 1839.7014 3405.8773 63756.9709 5092.5306 3008.7245 3008.7245 4262.2868 6336.5383 2342.1221 9435.466 5077.1959 5939.3036 2568.0106 2925.2282 5302.9409 71848595 terc Metal Homeostasis Tellurium Detoxification Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 5105.4174 6911.4155 2507.0426 2718.4173 6896.9811 6040.3981 11284.2958 7213.94 6248.6172 4607.6303 7165.7181 7443.7775 2780.1649 3152.8086 2703.7225 365841238 rd Organic Remediation Chlorinated solvents NA Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 10048.993 1702.739 3094.4768 3130.3613 3411.123 3411.123 3192.8408 6776.866 4033.3007 5929.3537 9854.5795 4755.4473 9953.3908 1957.8985 3384.706 3806.9785 2386.0981 9910.4527 260866065 dsra Sulfur sulfite reduction NA Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 20861.3912 27344.0712 6701.8531 6281.3487 4445.1253 197751.9794 5507.9983 4841.8007 17346.3322 7933.99 7933.99 4382.9251 66074.6692 6305.0329 3017.2354 4242.2126 9865.785 2195.7445 5566.2163 7459.027 7645.1299 2713.8172 2848.8136 2780.9355 4343.1024 119670548 catechol_b Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 15315.7712 5396.6581 3506.8433 4648.7794 8345.419 9672.3743 3893.5344 2012.1753 3735.8781 168197673 nfsa_2 Organic Remediation Aromatics Nitoaromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 4365.8445 26894.482 6294.5918 32981.9038 6048.8186 56367.6542 4016.5104 5947.8415 7660.0232 24589.6396 24589.6396 2548.8032 5865.3061 4255.1153 4634.3323 3875.8328 10367.9806 9198.2827 6247.8628 7474.1075 4085.9256 5931.1011 6494.3875 2983.6612 33574007 arylest Organic Remediation Aromatics Other aromatics Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 6368.5735 2026.7714 2948.7426 3734.1403 5525.5023 2012.7438 2012.7438 7316.5132 8493.5413 3194.8126 2588.2958 237802322 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 4341.2206 4149.3451 3814.3856 4412.4359 4042.318 62974.2803 7966.4611 5799.2463 2433.2598 2433.2598 3761.1705 7503.1172 6869.9151 3787.6047 5920.8595 7670.1897 3395.8517 4038.0087 6813.5002 3233.6578 13026.9671 20594.0244 7547.9871 2637.8849 3803.1736 4262.3253 3827.836 6661.3085 312878781 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 10327.8563 28666.7781 6078.8141 9485.6475 6809.243 2968.4864 153426.7329 16061.3327 4474.1814 162060.5627 5584.2021 5584.2021 3223.0143 3083.9028 4933.7403 12663.5858 14086.3166 9015.9055 8525.3751 6044.8716 10827.9372 2526.0641 13150.6635 206677412 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4463.7119 20178.1423 3194.837 13145.193 3559.5735 93605.0645 4941.8627 9820.7481 146432.4175 4382.9819 4382.9819 29441.4616 5808.4137 4962.649 21576.5632 4695.0974 5469.3567 7192.8129 8720.6401 5254.9835 2021.5338 7463.8626 7615.3806 13080.9806 8821.0564 242765885 ara Carbon Cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3934.3225 3683.6379 2728.7915 2728.7915 2677.2875 14657.5388 2312.6121 3250.2401 3437.2648 12813.5427 5115.0655 5941.4508 9559.4317 4381.2779 4465.741 6803.4086 372266771 mer Metal Homeostasis Mercury Detoxification Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 9043.2993 27236.3141 8641.8046 4002.2939 4059.4412 5259.5992 2721.6213 79995.3082 5058.6812 4771.239 4087.0137 3166.5935 3166.5935 10456.8971 4717.1098 4001.3663 14844.9987 2996.0539 10485.328 9443.1278 12064.1902 3105.3672 4981.8719 330809429 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 5407.3905 8728.2946 26342.4055 2189.4979 2189.4979 5869.3772 5175.9903 5254.7755 4787.6905 6476.698 5505.1191 5679.4384 2399.6487 10938.5642 383294053 Sir Sulfur sulfite reduction NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 6484.6731 346484.9053 2117.6245 2117.6245 6519.0741 7762.2898 2393.7733 4359.0631 22107.9976 7533.2403 2977.2236 5448.4438 306985625 glucoamylase Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7027.0082 3104.4667 4877.9864 3699.7298 7426.9929 4585.5929 7219.8052 2758.1958 2351.191 1948.8122 2342.9894 307633030 nrfa Nitrogen Dissimilatory N reduction NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 27102.6429 9872.8444 29069.4464 4459.2923 71906963 bphd Organic Remediation Aromatics Polycyclic aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 244427.5718 10062.817 10135.8284 3599.2761 4142.341 3293.5274 3652.3189 3652.3189 3542.89 13894.0134 3880.2698 5412.0524 21098.1682 2095.2129 2650.7926 5488.1359 6533.9514 16279.2804 11460.6369 6344.3331 3437.67 6438.6834 28591.7023 2494.5071 407713046 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phenoliruptrix BR3459a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 33882.1319 6988.3894 2967.7118 93098.2432 5155.9951 9721.2742 7726.4854 7726.4854 8278.2019 4218.786 13632.4847 7207.1272 4053.341 6292.83 5470.1527 4826.1979 5500.2433 110823824 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5729.6537 14281.7545 5457.7153 4344.5284 380309742 pcpe Organic Remediation Herbicides related compound NA Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 8298.0443 14062.7559 2301.5344 6573.9456 3448.0207 84420.6513 9749.9595 5789.1591 7096.1313 5398.9993 7902.473 5333.3722 2179.9765 3337.5025 2602.5341 326207412 amyA Carbon Cycling Carbon degradation Starch Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 10064.5855 13154.8932 6263.6336 18715.3542 6812.6539 3194.5923 2655.3536 143629.3918 4493.5609 9701.1971 35456.3422 10931.701 10931.701 3896.072 4355.8694 6760.9615 10045.5476 6327.5148 6811.351 3840.5622 2747.6316 2752.1197 315588163 ppx Phosphorus Polyphosphate degradation NA Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 7955.8456 17260.4605 26578.2206 4389.2635 36739.443 3260.2784 14454.162 3444.2767 3383.9093 3383.9093 13140.7727 4580.5012 5081.1631 6897.9802 2873.2655 3479.9555 10139.3505 19873.3252 9108.3912 6519.4797 10465.6171 2962.5005 5818.4591 5211.0857 2756.2195 365754775 xyla Carbon Cycling Carbon degradation Hemicellulose Elizabethkingia anophelis Ag1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia;species:Elizabethkingia anophelis; 7748.7463 12978.7567 83859811 tktA Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 4699.0688 90417.7662 20395.814 16432.9587 6610.9572 12224.8088 4500.7042 5136.1697 9006.3454 2599.8 9144.6457 7741.2043 6201.1136 3374.4569 3511.9593 10519.4552 247545704 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6684.8958 357030757 PRI Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 3886.0738 3251.4088 3654.5166 2012.0908 2012.0908 7966.1802 3663.8057 6632.6189 10005.247 4622.2041 1893.6521 2001.5216 149675743 dehh109 Organic Remediation Chlorinated solvents NA Methylobacterium sp. CPA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 7348.5279 2979.7376 7071.17535 5162.3746 73056.32065 4541.9274 4040.6574 5733.33 5733.33 2593.3722 12417.18425 3753.91055 5474.5423 4991.3457 4821.7168 8127.97595 3387.97025 10466.61555 5143.5331 7470.1234 2325.7844 4118.96095 5223.8666 2205.0217 6696.6672 20092251 dsra Sulfur sulfite reduction NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 5954.4707 10930.4951 4616.0844 5158.9742 3313.4825 102306.5761 5174.9899 7403.7839 15715.8566 5125.2597 5125.2597 7168.5815 4693.7008 11599.949 10675.3701 3374.3347 6636.9383 2491.7426 11075.5903 4098.1007 8317.5629 2036.1374 3911.027 4595.3269 3979.84 7809.5131 151302244 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobotulus sapovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobotulus; 7374.1847 19278.0613 19165.842 4677.6372 5931.671 147849356 narb Nitrogen Assimilatory N reduction NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5213.1666 2072732 quinoline Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8376.3657 2546.9941 4543.6117 14822.6363 397166957 nhh Organic Remediation Aromatics Nitoaromatics Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 4097.905 90310219 linb Organic Remediation Pesticides related compound NA Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 5503.2724 182437288 terc Metal Homeostasis Tellurium Detoxification Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 5844.839 2606.2288 3180.6406 10581.0784 145570252 catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 4905.9264 45074.3882 6574.788 3814.5007 10342.4824 4212.4713 96201.4439 5319.7667 4416.2311 8092.8752 12435.8691 12435.8691 7335.2315 4728.3011 4646.1296 9727.1077 12365.8994 10366.7147 8687.697 10113.2788 3302.4198 3378419 nagg Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 12414.7041 5285.7757 3206.791 4681.5718 4681.5718 3574.5093 3805.7097 7277.9603 3760.1753 2935.1564 2560.6321 167348802 ara Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 174336.8778 8961.8137 3997.1758 2169.7159 60003.5351 4307.2126 2475.4991 2475.4991 3897.3953 2491.9069 5753.6506 6594.1369 3436.932 3525.6891 3769.1809 7633.5724 90324264 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4717.7317 9962.8784 4013.1288 5780.2758 4781.922 2617.0316 123702.2578 5707.5022 7469.5576 2383.5147 2383.5147 3258.7745 8555.425 8510.8519 4052.3971 4871.1965 2703.958 2880.3885 7799.2598 9874.362 11934.5861 6887.4462 9356.226 3680.7526 5268.6428 5819.4811 3786.4183 5599.2702 302420833 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 12635.1499 17742.4911 61781.1898 4070.4449 5024.8175 3951.083 19416.5888 329188.6523 3999.3404 3907.8328 3791.3851 3791.3851 10562.9045 6135.0429 2649.4597 7464.9901 2529.8437 13872.0991 11837.6339 6379.942 31696.506 4822.3718 5778.2713 76577390 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7024.143 19295.1972 6859.8754 3172.348 4412.1498 7537.8288 101607.7483 5753.1576 2978.6682 2978.6682 3484.8172 7646.475 7810.8591 2756.9059 10581.877 2668.3603 12163.237 8283.2969 7894.5909 2633.1497 3389.92 12429.4863 2439.3726 87200517 badh Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 4172.2493 308035594 cox1_Viridiplantae Other Phylogenetic NA Mantoniella squamata superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Mantoniella; 4094.6132 4619.3834 5615.1885 2466.0422 357399486 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 8843.6734 8522.4817 5704.332 2310.733 3471.9779 42281.6162 3410.2354 12637.1683 4859.7934 2523.3922 2523.3922 4319.132 2426.5373 5686.5772 6138.5017 8600.96 5226.9719 5577.6324 1752.6249 4446.8491 12107.0436 213951892 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 4606.3414 7662.1526 67105.0891 4067.4049 4067.4049 5691.929 5203.2953 2567.186 3454.3444 2434.0439 110633473 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 4124.0122 3766.8926 4576.8564 219939177 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4074.2197 6588.2294 1950.9565 3124.8052 67782.5834 4992.1607 3305.653 3865.005 2182.2011 2182.2011 13717.9036 4068.5274 5380.3725 10308.7863 2955.127 7628.3157 9442.4384 4608.949 6188.5825 2686.9529 2872.3755 3203.6133 2695.3714 5975.8325 398957292 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 17740.1008 6796.8971 2977.4496 6288.5104 7308.8081 15002.1969 24807.4992 95342.8301 7917.6356 10774.9615 8337.3954 4787.1493 4787.1493 4355.0994 15581.4002 7165.6867 14411.5773 4890.8008 5120.5846 4802.732 15274.5536 12622.6938 16547.4886 5291.6699 12978.3869 12502.9628 8902.116 9089.8575 3048.7118 7074.0615 282566754 amyA Carbon Cycling Carbon degradation Starch Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 4830.6042 7016.8502 3157728 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 136819.1865 1992.4548 30117.6035 3593.232 3386.4639 4089.1883 5086.6871 4358.6621 8635.3068 5103.4836 119898145 xylj Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 6160.6061 27082.6409 6406.7912 3407.4276 3757.8528 3984.8966 3869.2929 4296.2773 72081.8493 4033.7889 5605.0215 5663.4785 5875.2924 5875.2924 11586.5942 27452.791 4623.525 8402.3597 16174.7127 2530.1903 13564.6834 4310.6401 28097.5389 8297.2619 8512.0839 2898.8432 3742.4526 2909.4051 14125.9565 6090.8115 187984376 ara Carbon Cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6970.2741 3983.7663 3198.8849 5988.2956 344223831 tktA Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4398.1377 6786.0288 2578.8923 3261.8247 66304.3406 4346.2601 5287.8032 3191.7402 3191.7402 4785.7885 2556.9125 8739.2827 4461.8273 5431.7365 1789.7192 3290.1219 3266.7486 83852744 mer Metal Homeostasis Mercury Detoxification Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 5037.8153 3098.4565 3529.2232 163368.8898 11321.5776 14325.3211 8620.8423 6191.1098 3867.4522 3852.1414 2535.478 11543.927 2054.3017 2464.7993 2699.4067 218274293 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 4587.6036 7811.7559 5528.2842 5284.2064 1784.4639 253689668 Sir Sulfur sulfite reduction NA Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 4726.9768 111024950 phta Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5555.6815 11038.8493 4667.7376 2434.8581 5844.9377 2771.4556 70640.0355 3617.9421 10561.6662 8390.3249 4655.6241 4655.6241 6097.2708 10988.7245 8641.3551 2769.5914 2775.0888 9747.6039 2312.231 10909.6795 5021.4247 5010.2041 2269.3788 4233.1254 4581.5289 4128.2986 20399.5021 54778375 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6217.9693 2869.4665 379044663 endoglucanase Carbon Cycling Carbon degradation Cellulose Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 22385.3463 73053.8637 89244.4048 2808.7722 47709.765 8392.6995 10298.6862 13307.2342 13808.0662 19394.0518 15783.1325 5320.1635 5320.1635 7423.7557 16690.8097 39979.7846 7223.1078 66697.2219 3256.2511 55711.2781 27526.88 45485.0833 12724.7566 11934.6714 19531.8643 4239.3747 134142987 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5927.4034 4242.2138 387888192 cysI Sulfur Other NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 7058.7223 2539.8951 2577.3715 5564.1923 17483.3718 11992.3742 11992.3742 17603.0796 7604.7005 4650.9231 4551.8173 3229.8785 4977.5511 2537.3137 4538.0942 254481517 limeh Carbon Cycling Carbon degradation Terpenes marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 14201.8792 4085.0363 3583.2974 5318.6509 17233.3672 8193.8005 3907.3906 100576.7852 4365.8293 6879.4867 20743.8414 20743.8414 8485.1197 15229.1579 8640.1406 6185.8385 3343.4187 8439.8815 3993.0717 14199.9917 8239.1537 8735.3584 3164.154 3562.9434 5183.2064 4057.2183 7374.4258 330954173 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas syringae Cit 7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 5778.1522 8074.7201 6897.9231 10382.8941 63978.0336 2610.9308 2610.9308 44231.3495 18949.7711 5691.5407 10810.9194 227502820 amyA Carbon Cycling Carbon degradation Starch Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 4251.4709 14817.5748 9487.7194 4044.3152 3515.0642 5790.1055 3938.4356 122693.1153 5455.7569 12737.8392 13343.4117 6951.8884 6951.8884 6749.4448 5812.2343 59673.5219 5199.7476 4866.6625 3592.2935 11089.1908 3094.9333 12334.9592 8919.1394 10285.8811 3558.3755 4101.8542 3662.4972 3247.0753 4519.4637 357394035 chitinase Carbon Cycling Carbon degradation Chitin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 7171.5828 28723.5176 2720.1202 3415.2516 3396.8104 2874.3337 2874.3337 11544.0275 5107.8653 5742.28 8738.9541 302576737 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 74860.7311 6285.8656 164708996 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 40777.2175 13497.4899 2485.7195 56724.2937 4462.5765 14099.348 11225.9293 5148.5954 69681.0429 5927.5563 7439.2239 2544.6208 7993.6558 4461.2997 9916.6224 6012.7295 6951.4382 2616.2091 4280.173 4107.9036 3039.3468 9469.2149 315477771 nrfa Nitrogen Dissimilatory N reduction NA Aggregatibacter segnis ATCC 33393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter segnis; 6166.8412 2889.6558 11858.8966 2988.6504 4434.2766 22967.5729 103138.2231 8157.8954 6638.4129 4565.6742 4794.8115 4794.8115 28073.8611 43057.6927 8154.4591 14298.8971 5639.3077 4750.1822 2619.8131 27848.3179 8514.8814 41867.6695 13973.2131 4769.7774 7584.0977 4360.4659 3613.3553 4524.8328 2639.8655 10526.2898 386762176 ppk Phosphorus Polyphosphate synthesis NA Helicobacter cinaedi PAGU611 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 10640.9332 2410.6249 34105.6436 5413.5287 2692.7603 4760.5416 116222625 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 15851.7881 3468.2681 3394.2259 4160.945 61259.4617 3880.4195 7652.5338 3010.7542 7987.223 21178.7562 9676.0517 260455830 amyA Carbon Cycling Carbon degradation Starch Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 5073.7957 6193.6107 2772.0984 77166278 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 7558.2255 5030.2852 2357.0432 2107.9854 2107.9854 6496.0595 9927.098 5669.3679 5563.9967 2265.5344 3281.8922 302435063 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4209.8524 2619.1984 4956.5355 8072.4972 4280.6445 5936.9947 3597.653 56476017 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 4272.2091 21441.9569 2370.4323 2945.1892 7214.0245 3831.2128 4677.8299 112423.897 5396.8029 5946.0036 2399.8902 2399.8902 3177.7583 11084.1759 7347.3876 19166.6716 9779.0811 2375.9156 4203.3473 8495.4665 2754.0444 17323.4598 5981.6293 8506.8983 3400.4717 5509.0582 4775.893 3991.3024 9727.5238 238578667 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6090.0567 32680.6871 35006.3079 21129.634 4913.3432 4723.3392 5370.2663 3631.7706 9332.2665 19886.8239 18013.0375 8570.4371 16456.5829 4680.431 4997.2537 7717.514 164562254 xylanase Carbon Cycling Carbon degradation Hemicellulose Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 8270.4711 13468.254 4602.5981 3158.2657 3626.2887 64171.8811 4671.8322 4024.0014 3144.1537 3144.1537 3292.2557 7076.5405 3935.7091 4451.9292 11975.4542 3086.9225 10558.6342 8146.4614 8400.4651 3368.4371 3279.5027 56685098 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 6301 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 67111.4933 88175171 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67313.2084 254383959 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8922.5264 1804.1937 19925.517 4096.2474 4246.7531 3931.2424 3980.4779 5477.5715 17032.6555 4084.719 3908.4555 7192.3953 260607100 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 4101.2347 2326.3853 3507.7124 86499.232 6035.4799 3746.2233 3430.6152 4696.7015 2306.4169 10187.4421 4906.2182 2528.4128 3108.6402 239787498 cellobiase Carbon Cycling Carbon degradation Cellulose uncultured bacterium superkingdom:Bacteria; 10267.1081 2042.6182 3042.5392 3659.5206 2626.5217 3668.7174 3202.3162 3202.3162 7366.6948 4010.8524 4185.9786 5119.2889 11022.1698 2514.1325 2546.3836 7057.715 2207.26 7778.1212 5345.3244 6585.9573 2528.2978 4148.6429 5510.8748 2142.6205 337769455 cmci Organic Remediation Aromatics Other aromatics Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 5929.7543 53770.4418 56928.2857 3475.0766 5532.6895 4367.4687 5936.9718 5987.7441 3189.8112 229868131 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 4266.9082 10039.7858 115366212 nbac Organic Remediation Aromatics Nitoaromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7275.9427 4651.7193 5837.3263 2404.7877 4627.8517 2831.0809 404402719 nfsb_2 Organic Remediation Aromatics Nitoaromatics Pseudomonas fuscovaginae UPB0736 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 4415.2032 3221.0645 60734.0535 3884.1546 10344.7832 3511.0201 3511.0201 4953.2156 149811896 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6327.3573 7571.5307 2162.3682 4495.5166 3640.8349 107022.8509 4196.4537 5364.5459 7359.7332 5887.7823 5887.7823 3222.1972 4925.6899 4367.2319 14624.9462 2510.9506 8877.1878 9288.5458 3785.3383 3500.0829 3062.873 192359349 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 52204.8565 23681.6265 3978.4674 6836.3025 255707724 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 31883.5805 3087.3232 3014.4603 4008.613 74294.5375 5599.1465 12193.4846 8211.2344 7270.5981 7846.4978 2490.664 3162.4338 19358.9701 2769.0313 5613.2417 6320.1702 7839.6447 3103.8789 6353.1669 3646.3873 5950.5503 300503063 xylanase Carbon Cycling Carbon degradation Hemicellulose Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 5864.3739 2878.3782 302925097 mannanase Carbon Cycling Carbon degradation Hemicellulose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 5347.966 12522.7655 137133.1177 6944.6443 5934.2323 306527527 arylest Organic Remediation Aromatics Other aromatics Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 33229.484 11333.1927 9491.8214 6360.2852 3504.9763 4224.0823 5817.2931 4656.1353 636403.7425 6953.8808 6735.7039 13822.7321 11562.624 11562.624 9692.9975 5755.1084 4697.385 5854.7571 11759.9909 3500.8521 13408.3248 13291.9081 16697.6863 4533.5046 6004.5277 10746.023 353212035 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11150.1951 6799.1003 57561.7619 2827.8031 309306797 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 38889.205 4292.7784 5414.3705 2601.4763 86011.5671 4653.3136 2188.2517 2188.2517 4526.9118 2919.3226 7492.8205 23349.8651 4656.6404 8259.3357 3142.7968 3977.8054 254437872 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 23537.6096 2297.5466 2371.9571 2371.9571 4920.4601 3426.8947 9991.4977 7100.2851 72608.6064 2271.1971 2971.877 4595.8731 2981.133 89073581 mer Metal Homeostasis Mercury Detoxification Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 6335.1163 2051.8406 3101.0074 2761.0658 90379.3816 6380.1167 50779.7697 2808.2703 2808.2703 11901.4064 4947.5905 4567.3958 4587.9913 4034.985 9277.7993 5305.6517 9851.4167 7667.6639 4218.9135 2600.7327 4069.744 2061.6681 6380.8886 157011606 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 9013.2233 12893.4507 8561.9951 8459.8629 75845.9383 6719.4525 5135.2721 5135.2721 3177.5534 7344.7752 2937.9489 4618.8626 2525.9579 56677635 soxY Sulfur Sulfur Oxidation NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9304.4487 2136.343 2468.1533 155041.1125 3744.4289 4471.1867 9158.0655 2050.3754 9120.9593 5246.9524 5955.649 4213.8241 3602.5277 2514.0066 4964.0823 331025164 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 6169.3176 2187.6566 6465.6692 4752.6421 6780.2859 4029.6994 7694.4414 5613.2488 4696.2601 6792.239 3208.945 3177.2965 2851.4333 6717.4326 364569300 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 4778.4349 1928.7356 3939.4801 10310.52 6885.92 6885.92 3131.4204 5551.2306 6253.5409 4171.7015 10534.2994 2604.0648 19830.7259 384091576 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5393.2179 7273.184 12182.3895 5550.2522 2965.4562 111326.9422 7782.1749 5437.8531 9401.675 11509.9736 11509.9736 3380.5903 5085.3126 4948.6881 3895.7991 12344.7794 2488.2173 10467.2053 38522.5745 7267.8504 3463.5555 4744.8825 3987.6299 3401.8667 354961081 urec Nitrogen Ammonification NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4282.5504 3844.7615 3497.3817 8631.106 61711.5104 4686.2886 2796.8839 5684.6439 7867.9927 12761.6594 2097.7232 308226366 amyA Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 5133.9115 6235.5991 7898.5229 22733.8793 357037.5173 10587.6572 3895.5627 5464.2001 5691.6743 5691.6743 21007.5869 6147.999 9664.2084 7590.355 5446.3198 7909.7922 12675.715 70993.7559 25083.9696 3992.6254 4525.0142 3438.0628 8578.1534 302489388 arsc Metal Homeostasis Arsenic Detoxification Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 5942.906 14562.0209 12729.2194 9996.0876 225194119 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9750.6735 9576.2295 3912.7049 5831.9362 3977.9122 6653.652 117946.5255 5577.6716 5433.4569 4512.56 3549.4117 3549.4117 4547.9725 11189.4223 4612.6047 4030.3512 6492.0444 8306.3574 3669.142 2937.0843 11087.4132 9593.9734 7341.189 9697.0966 2899.3507 4559.642 4085.6634 3961.0761 10620.2709 386422649 Sir Sulfur sulfite reduction NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 5668.1274 4028.0642 3865.9387 293613363 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 4916.7557 31398.7308 12230.8152 4216.0843 118003.4051 4740.1827 7069.1345 19560.3162 9528.6499 9528.6499 6678.6226 6087.6982 3270.9622 13241.2215 8133.1576 5121.6088 6713.917 1870.8421 3516.6443 41367224 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 52575.763 6462.4247 269923210 amyA Carbon Cycling Carbon degradation Starch Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 4995.3822 8358.0961 2271.949 3982.3719 36147.6215 3016.569 4619.993 51728.7598 3265.85 3265.85 9646.2003 4793.0643 6293.8753 3716.5118 5474.1738 7721.7237 5861.2029 2134.3498 10106.1245 3841.9496 2755.6549 308059344 ppx Phosphorus Polyphosphate degradation NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 7031.4774 13750.4172 7334.3175 4906.0226 5526.1627 3340.3425 3080.338 71302.6414 4841.1432 4454.7556 3351.1016 3351.1016 4349.1248 15559.9421 5150.6894 4085.2854 4322.0853 4353.5756 2202.1128 8968.7909 14558.0133 9293.4594 9493.839 7145.3857 4320.9896 2945.1195 2729.7761 118593213 dehh109 Organic Remediation Chlorinated solvents NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5453.7035 7871.159 119096.5826 6612.4611 4478.8872 3355.656 197957.0113 3860.8907 4015.8708 7698.9394 5766.6838 23353.4572 64444.9215 11668.5872 12159.3479 2335.5607 3266.6262 3662.9439 34017202 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5997.2665 2585.7194 37998.7934 5335.0128 4345.6646 3779.2892 2924.7225 4005.1522 307945294 cueo Metal Homeostasis Copper Detoxification Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 3936.9184 2371.2221 3116.1049 3699.9054 63934.9298 3674.7854 2965.1478 3264.5021 6247.5987 4588.6557 3632.0707 2678.7883 5557.8517 2358.6445 4051.3516 5657.7797 1736.8157 3370.7804 2704.6731 4896.2298 291312517 atza Organic Remediation Herbicides related compound NA Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 16329.3048 5016.8727 3528.7661 103987.1144 34161.8447 4601.8334 4819.6661 20950.5401 2257.5757 5066.8142 2029.7625 17888.0298 3760.2799 3154.074 2932.4774 4768.9422 4897.8584 292677071 ara Carbon Cycling Carbon degradation Hemicellulose Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 9342.641 173830.1946 3408.7021 42145.7768 5607.6172 154183426 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6127.5869 7456.6613 32330.6033 119406790 phytase Phosphorus Phytic acid hydrolysis NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 64492.0507 295937 exoglucanase Carbon Cycling Carbon degradation Cellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 4412.1938 10138.7381 8518.9792 6276.2631 4152.8929 3145.3746 3912.1023 4805.9238 3090.1066 3090.1066 6834.1724 5141.1891 9360.7246 9718.8049 7535.6647 8960.9607 5627.5217 7677.9129 3180.97 2779.9626 3705.6718 2943.5742 46389817 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5427.5574 8814.6187 2449.9995 5427.3739 18161100 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 4291.059 2586.5502 3690.7236 67785.8311 4250.8956 3804.699 8777.5052 5155.3655 5096.4288 4921.71 7601.1455 2167.6563 5449.0531 9687.6444 5303.8288 2659.0243 2879.1706 4013.4821 2492.3031 8281.2935 254283241 vgb Virulence Antibiotic resistance Degradation gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 11786.7022 302909584 rgl Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 4358.8536 15962.5386 59711280 urec Nitrogen Ammonification NA Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 3981.3457 6873.4574 62084110 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4356.913 7306.9503 301109681 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 7922.5391 29007.6434 16826.6659 3252.669 3598.1727 5029.5949 2883.4504 101207.8337 3952.3523 5877.8438 10906.4901 5706.795 5706.795 10377.6569 7670.665 6572.9165 2360.3957 4102.3064 9434.1338 4800.5767 16105.6734 10594.5676 10277.0937 4167.7469 4213.4919 3586.44565 2244.1005 157848467 endochitinase Carbon Cycling Carbon degradation Chitin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6585.9342 11592.8356 6802.3148 3975.9952 2582.7106 2582.7106 3779.6935 5562.5715 16037.6551 224994881 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas luteola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 33544.6886 5396.1748 3439.307 2384.9409 313693900 rgl Carbon Cycling Carbon degradation Pectin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5343.0298 89512338 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3988.4395 2763.9125 57662.0231 3104.465 3810.948 3585.4791 5849.3364 2515.793 2349.9252 5035.2386 243349.6256 4695.2745 2789.9388 2855.744 3033.7831 4835.715 229610697 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4602.6633 2333.1664 2114.8629 3643.7139 4814.3251 2851.1794 6826.6008 3932.3317 4083.8374 2161.2385 5650.6739 7680.106 1947.752 2931.8894 3105.9692 222452564 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 9211.3015 2302.1551 6077.1238 145503.5304 5466.7432 1602.0165 4479.6232 218355120 cueo Metal Homeostasis Copper Detoxification Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 9104.883 4439.6744 4906747.4027 5417.7206 3183.3973 3183.3973 6606.1728 4808.6356 365183370 mer Metal Homeostasis Mercury Detoxification Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4929.2887 343480617 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhizobium sp. TSY03b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 5258.5604 2297.7755 2297.7755 9015.2695 323965299 bphd Organic Remediation Aromatics Polycyclic aromatics Escherichia coli M863 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 7348.1006 7576.0865 6526.1201 8690.6012 27128.7291 2752.9474 118097.7341 2844.4201 4651.5908 71001194 axe Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5430.038 20051.6926 5381.6623 3565.0313 5623.4314 2541.576 68512.3903 4489.5256 3702.9438 20639.0084 20639.0084 3348.4879 6169.7457 4411.1098 4167.0684 2782.2063 14881.8195 9107.581 7372.9759 6352.3613 1816.2376 3113.9538 3268.738 6670.329 78060288 alginase Carbon Cycling Carbon degradation Alginate Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4955.4669 3487.153 2705.3803 3501.7954 5384.3939 2461.8074 2461.8074 5491.2089 4035.7354 6368.4453 4916.792 7421.4888 2825.9716 3203.1292 3650.8094 302404491 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 4535.0464 10330.8655 2813.0276 2975.217 8786.2169 4430.7198 6309.9277 3544.3686 3544.3686 2875.7149 8458.1137 6509.8126 8584.8487 5895.9769 2597.1082 11142.0233 4633.9497 5504.1277 2000.0213 4043.4368 3749.9205 4412.075 304313255 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7842.9608 5702.5719 2541.716 2774.4543 5734.2686 113674.9672 5827.3175 3721.7471 8182.6631 7258.8292 5020.9313 5128.4485 2494.8821 5746.2717 4386.9261 10035.425 7178.6444 2605.9236 2955.7665 4011.5878 5096.5115 119949693 poba Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 14631.5505 3251.1608 4487.8689 10239.3067 12127.5603 12127.5603 4546.818 254465150 dehh109 Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 5204.5075 7799.2944 4907.8527 59102.6589 4452.9614 8813.8969 4339.6879 7098.8187 5245.1813 3337.0819 219546032 dsra Sulfur sulfite reduction NA Candidatus Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanosphaerula;species:Methanosphaerula palustris; 4715.9997 12334.2116 2463.0274 3835.3067 3580.597 96357.278 4784.5324 11396.4101 2644.5966 2644.5966 6178.9114 29217.8601 4747.807 2996.4182 11061.5844 14849.394 8335.602 8142.6342 2247.9886 3083.8037 3920.6636 312170116 nbac Organic Remediation Aromatics Nitoaromatics Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 5759.0424 2410.3752 3202.5183 6698.2134 5268.0297 60688.4631 5565.4548 4631.2754 8663.4016 4478.7625 4478.7625 7930.7536 3555.1826 2903.1388 6479.7735 2191.1345 5243.4015 2192.8018 4827.974 5824.0954 11931.5051 146451059 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 6881.359 2413.94 2977.7458 4925.0016 8678.7375 9093.9065 296136069 mer Metal Homeostasis Mercury Detoxification Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 8423.1814 13113.9401 5516.8949 1977.857 2790.9106 3266.2368 13646.0235 4607.605 8403.8021 5830.8061 8405.1704 6784.7301 5873.6935 3458.6397 3951.9718 5207.3631 359451911 cysI Sulfur Other NA Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5665.3511 19631.4647 4364.3348 41130.469 5403.8187 167657242 ppk Phosphorus Polyphosphate synthesis NA Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 5485.857 2377.9212 2030.4371 3343.0488 65355.0469 3973.8941 4147.8165 3266.4186 6452.6499 4976.366 4516.4464 4021.7874 2241.4667 3193.3565 6129.3544 10371.6603 5006.7327 6439.1311 2860.6534 3744.6134 2617.5756 157164517 nosz Nitrogen Denitrification NA Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 53675.8896 5253.6729 4866.778 340027602 terc Metal Homeostasis Tellurium Detoxification Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 7590.5791 32015.8124 23113.9183 2705.5314 5114.9282 5944.2161 93175.5278 7759.1878 7152.1122 7510.2528 4346.9387 4346.9387 3002.864 5017.803 7803.023 2396.5244 4457.4514 22583.2779 4976.3587 13329.2998 14058.4349 18421.0504 5434.5477 6439.3828 12653.1355 4486.1117 388429536 nosz Nitrogen Denitrification NA Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 4358.3017 7978.4156 12428.3483 13849.9098 5648.0288 2409.5902 2409.5902 5384.0158 2777.683 4021.7854 7635.9869 2467.2772 12682.6696 139003312 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7292.9344 367028931 badh Organic Remediation Aromatics Other aromatics Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 10103.3213 7280.0419 3805.9553 4715.2086 2983.0764 56179583 arsc Metal Homeostasis Arsenic Detoxification Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 88775.7574 8667.9572 109452504 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6574.9835 3684.7207 4772.2808 3068.1641 49678.6912 11575.6145 12206.0728 8101.3196 332181924 amyA Carbon Cycling Carbon degradation Starch Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 10301.3136 4286.8316 2536.9666 4307.5035 4208.8526 3308.9842 3828.3965 5724.9274 4094.8433 14415.9677 3902.7079 6205.9743 2142.125 1255482 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 8968.9207 5169.1406 2838.1175 3634.4613 86886.5804 4539.6666 1994.0726 1994.0726 2816.6187 5979.2795 4716.6501 2410.713 7012.7426 8569.4451 6639.5651 2172.1982 3208.3953 5445.9708 192764294 nifh Nitrogen Nitrogen fixation NA uncultured prokaryote 16524.9857 6917.8998 116077899 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17615.7223 6567.3034 240331.4981 220709168 xyla Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 10513.2265 7913.2972 6738.4155 6667.7776 14834.6051 3932.8821 4129.4329 4129.4329 3147.6594 9410.8158 4031.4182 43204.4706 9057.0307 4551.4712 2756.8397 2925.2463 15862.4363 5363.2417 6474.0723 2531.8486 6211.9968 3467.8051 3531.3815 27372223 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pigmentiphaga sp. NDS-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pigmentiphaga; 4258.0911 4845.8487 5165.6374 4167.025 6818.5998 6818.5998 7426.6454 4090.6839 2237.7511 4288.3722 5142.2618 3752.5919 2926.6471 2405.7045 389808237 dehh109 Organic Remediation Chlorinated solvents NA Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 10256.259 2446.2407 5569.2444 3019.006 41585.0887 3373.1425 7624.9842 7624.9842 12577.2248 3986.4344 5708.437 5188.1472 9318.203 6972.9214 1896.2695 218519520 metc Metal Homeostasis Mercury Detoxification Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 5512.639 4277.8613 3916.5589 2560.7603 3485.7731 7179.4073 8620.9311 3551.417 275082.0542 4348.1103 4348.1103 5858.6623 9813.5885 4715.4368 5207.9246 7189.1605 5638.9973 2638.3852 3537.9153 6482.1756 13542.4048 8158.5478 8049.5455 2950.1617 5434.4328 5444.7545 3564.0642 10143.9747 318042430 b_lactamase Virulence Antibiotic resistance Degradation Synechococcus sp. CB0101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4693.27965 11399.845 2921.1566 8131.294 3888.18085 3713.4915 4085.6819 117365.9437 5238.5027 3364.9934 2455.6477 2455.6477 3625.4718 5604.4307 5369.0339 4423.85365 4591.3416 4667.4755 2297.9276 2715.9606 10412.362 3912.8693 9391.9824 4256.3259 8395.0233 2575.2448 2748.1294 3814.4403 2723.115 4638.0125 311219995 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 5401.7985 23539.6239 9449.2952 5680.2518 4052.5848 6329.2978 2320.9167 2687.6592 296420905 protease_serine_fungi Carbon Cycling Carbon degradation protein Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 32469.7125 4660.8297 2552.902 10741.7838 4462.2173 5286.3078 18665.9427 3908.6568 260415184 soxY Sulfur Sulfur Oxidation NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 7012.5619 16489.1663 95591.5142 3298.511 4176.5912 154309.8564 3891.96 5229.0636 7154.7011 6401.1187 6401.1187 5410.9052 7345.9682 13433.0318 2960.0006 9672.0854 27059.7913 90647.235 21852.8276 31908.5459 10583.3363 4786.9272 6216.6828 7544.8936 149195.1256 23041.7299 70729553 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7560.8646 11702.5537 3763.0952 4008.9982 9070.9764 3212.3071 5008.8125 285017740 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 18075.4109 25819.3552 13421.2427 10771.3089 7988.8305 3410.0848 2479.3888 153433.0199 3626.4565 10352.5273 14649.6587 6332.9936 6332.9936 5392.7892 7375.9495 40200.1461 5455.4042 9003.1862 15864.2213 3239.7202 24142.3344 9425.8034 13898.2471 7041.1082 7139.3603 6176.4556 2634.2876 11071.311 384371440 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc4 superkingdom:Bacteria; 4985.6126 7822.4001 8106.6151 5088.3083 2557.83565 5528.7077 7355.9081 78782.02305 4822.0828 8082.2911 4477.0371 3140.0896 3140.0896 5177.8396 8167.8618 5269.767 6914.5104 11296.1452 2920.45585 6165.69405 5225.7934 10022.09515 4705.3357 8845.3344 10235.1636 3611.2968 4433.6765 2827.3353 7541.6976 315119772 ppk Phosphorus Polyphosphate synthesis NA Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 27421.5491 11549.7325 3989.3044 6368.074 7646.6432 3822.5548 3822.5548 7200.5345 5595.8793 3145.8974 6239.7998 2143.1325 6132.2619 30945.8335 2168.9681 13391.0336 3402.6184 299766346 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9204.0124 22324.0577 379065671 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 9392.7147 3139.7615 127320.1814 1876.1505 1876.1505 31118.6311 296118528 bend Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 4187.7002 65428.4156 3756.7256 23564.4561 7374.7984 297531989 pula Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 5-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 4364.7042 4694.4381 72685.8394 6524.9116 4928.3278 3582.2889 815821.9135 4620.9363 4087.1978 10465.1602 8356.3706 7487.5529 126726253 urec Nitrogen Ammonification NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 6327.1201 2344.8035 2084.4662 2084.4662 5198.8171 2438.6415 5334.9514 2030.4503 9032.6547 6550.9006 5467.2283 5074.7409 164455914 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11117.8536 17580.2017 20831.3447 2820.9112 2845.0595 2389.8569 76071.4299 3693.8989 7677.8852 4137.8326 4137.8326 6272.1401 8614.0758 5054.6823 10666.9246 9513.1863 7206.5763 7846.0037 4657.2405 4206.7167 7377.4941 3686.3313 374435164 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3843.9841 9818.3897 5273.2042 3801.9871 4459.355 2678.258 4873.9633 3879.1544 3780.3798 5005.2019 9115.6636 5063.0523 2715.3048 2889.9969 7637.7547 3706.4806 284176970 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. 1-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 18974.9002 13485.8176 3676.3549 5136.4834 6285.3672 4836.5234 4949.9629 142134.5254 5301.7976 4510.997 15004.7923 3825.1545 3825.1545 3111.6728 15150.7191 15014.2866 8645.5437 8220.048 5399.5582 2303.0042 4518.2726 12164.0778 3646.7151 19092.3093 11588.9096 10364.845 3636.9803 5251.7861 3412.4708 4033.401 10006.4842 85707324 one_ring_12diox Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 11338.7695 8899.3364 29536.3475 21911.1548 2939.9563 2939.9563 3851.64 6205.3812 5521.5424 7745.6971 41276.322 312958923 cysJ Sulfur Reduction NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 7243.6518 4607.7223 1868.4386 1868.4386 3556.222 4827.4832 1881.4355 125716460 aoxb Metal Homeostasis Arsenic Detoxification Arthrobacter sp. 15b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5974.2156 422314059 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4517.8516 8809.5993 5377.3997 2311.4334 154183431 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15067.3674 398979486 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4377.2837 3869.9497 2599.8359 81329.5709 3718.9724 2774.6745 2774.6745 4901.7632 5677.6427 2331.6688 2560.3918 6422.2648 2242.9008 4350.5257 6348.6665 3086.134 2136.8208 319743239 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 4197.0945 8310.729 2817.171 3261.2863 8511.3985 57354.8352 10357.8292 9513.5589 79668.5932 4096.798 73763040 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4916.6812 3756.5514 73252.2715 3212.8331 4207.5388 2823.9101 2823.9101 5256.5903 2558.7641 6647.9161 4428.6714 7766.9401 2460.8798 3221.3294 3734.4823 398657994 alkk Organic Remediation Others NA Phaeobacter gallaeciensis DSM 17395 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 5259.6161 11134.1761 2286.9587 171583.5411 7024.3746 3122.1742 7395.0768 22488.9148 7269.1348 2039.4119 3098.5578 407802383 arylest Organic Remediation Aromatics Other aromatics Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 5288.1134 212539087 pec_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6870.25 4334.4116 3923.6632 5368.4391 366087986 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Lactobacillus zeae KCTC 3804 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 4251.3895 3852.6843 3377.0928 6484.354 3545.4637 6161.5246 2463.0823 5358.635 1884.133 2402.8722 2528.0947 2825.925 4336.4291 116619465 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4324.3447 3906.4214 44033.8265 5473.4434 3320.0419 9136.9707 5040.4761 4790.977 2141.002 7946.3398 2989.3047 3032.1287 222120005 terc Metal Homeostasis Tellurium Detoxification Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 5517.7173 24183.4718 14834.3708 3098.3044 3521.6301 27782.3365 3741.1174 6193.6344 2614.5121 2614.5121 27556.5891 39648.6956 111347.6736 9478.3045 6108.1644 2274.0593 4631.8722 11586.9584 77954491 mer Metal Homeostasis Mercury Detoxification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 4643.9034 34124.982 373223168 amyA Carbon Cycling Carbon degradation Starch Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 12972.0206 28334.9487 31067.516 2573.7486 93779.9919 10667.5011 4986.2262 3271.7229 3271.7229 6308.0842 4354.0035 16218.6657 3620.3918 8277.2492 6285.1799 6497.7739 7868.0735 217504649 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 5734.4644 21742.4625 2113.2793 2113.2793 4222.3962 7189.7383 2933.8219 372009359 amyA Carbon Cycling Carbon degradation Starch Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 4994.6041 12185.0873 37817.3367 4139.8715 2305.6797 2305.6797 5732.3971 3704.3007 254466756 dmdA Sulfur DMSP degradation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 5648.8605 4653.9875 3981.2262 2474.0923 2708.7833 9185.1131 3948.3238 3948.3238 9027.2778 5819.3179 4295.1812 14924.2994 10620.5751 4989.8518 10493.1859 5122.2002 5651.5997 5253.0206 3413.5563 5053.6994 124488205 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4903.9723 5211.3436 4413.5962 2246.4957 2246.4957 6229.2082 5309.542 5749.8051 11688.6658 4092.1647 6056.5995 2091.7069 5229.9725 5220.0841 298550427 amyA Carbon Cycling Carbon degradation Starch Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 5462.8122 16275.4664 3085.6025 4590.2677 3809.6907 2910.2114 118674.1337 5483.9654 4614.9866 4010.3812 2343.7418 2343.7418 11712.5657 6403.187 4080.3701 2398.0775 3083.1295 7458.9463 2374.6476 12574.1825 4125.5014 8424.4488 2398.6907 5569.6982 5001.7007 2031.0058 16386.9423 21217673 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5332.8752 3255.8356 3584.6224 16556.5901 2650.8642 2654.3635 2272.175 2558.1007 373855010 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5438.1868 8333.0027 4054.7487 11757.4455 2959.9704 2959.9704 3389.7462 5263.132 21489.6991 3710.4772 6007.5804 27348228 endochitinase Carbon Cycling Carbon degradation Chitin Nocardiopsis prasina superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 27428.1469 2313.86145 2788.26995 6133.8393 6622.2963 517371.2335 313124226 amyA Carbon Cycling Carbon degradation Starch Lactobacillus delbrueckii subsp. bulgaricus ND02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 11750.3238 4932.3527 4932.3527 343955855 Sir Sulfur sulfite reduction NA Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 4556.8753 7620.8798 4962.6031 4553.9444 74836.4855 3937.234 2552.2191 7606.0213 4095.7837 3489.4627 7752.8035 2708.1315 5852.0136 2137.4673 15408.5642 8497.3693 3950.4959 3618.0842 3369.5986 3389.7714 7234.5132 139478467 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 5843.7197 5355.2681 9028.8296 3295.8325 7787.1052 4144.5804 3062.1803 2895.2401 5712.1227 3836.5103 12142.3817 5313.7771 5501.7514 2104.8688 2416.3969 6504.4454 3724170 bco Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 4501.7674 15717.5218 6668.3707 55302.5696 6339.0362 3964.1371 3964.1371 5627.414 3907.541 8923.7798 4136.9409 110631072 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 4013.7773 3378.6205 102863.6073 3526.7738 4448.7287 5405.7001 2988.3542 4233.0831 380732198 cellobiase Carbon Cycling Carbon degradation Cellulose Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 4512.1213 2558.8358 2526.4021 2011.3007 2011.3007 3591.7533 5812.4978 4544.6441 1882.0652 389870432 terc Metal Homeostasis Tellurium Detoxification Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 10602.5365 6046.2812 45550.2078 4642.3739 4071.0114 9900.8 89101.6187 3586.6066 3280.3051 5096.6466 3787.9666 3787.9666 3193.6279 7103.6236 3498.8748 3685.4871 10156.3952 42007.3634 12301.6033 8254.7894 2519.7162 2826.1514 3347.33 108561.2113 5287.4759 157145274 amyA Carbon Cycling Carbon degradation Starch Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 5490.8702 19141.2426 5679.6665 4116.2957 6497.2115 6863.7416 3154.584 101768.9066 6672.4384 8275.9519 11868.2792 6915.0644 6915.0644 5326.553 10758.7192 9481.2098 4915.8415 9418.4967 8661.24 2663.0186 4819.1022 14833.8277 2546.3175 19122.0322 11580.8939 9851.1992 3659.8164 4606.3597 8259.1414 7963.6161 119191930 glx Carbon Cycling Carbon degradation Lignin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 6258.842 17434.1821 4804.9628 3066.3088 5440.7863 80957.4271 4686.5057 6856.6645 4979.5472 4979.5472 2593.3457 6558.4766 5039.8044 6572.8257 3609.9311 8404.4619 8809.3939 7713.8179 7227.8443 3003.9382 3779.1553 387129625 arsc Metal Homeostasis Arsenic Detoxification Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 7319.8108 22893.5916 2465.5524 4219.0555 4219.0555 6056.8547 35159.8942 3155.7101 83372376 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 3927.1203 6415.253 8310.272 4284.1415 89113904 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5428.0835 2177.7822 2177.7822 374664245 terc Metal Homeostasis Tellurium Detoxification Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 3851.7864 3384.5894 11954.4723 2036.5811 323469260 terc Metal Homeostasis Tellurium Detoxification Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 9572.0426 37297.6694 6117.7311 7135.4564 125450.8135 5880.219 4704.8029 65597.5231 8825.4979 5369.8434 4684.1021 4393.4547 4393.4547 3595.156 12246.5676 8356.3965 5020.7248 3808.4947 17010.2935 2696.0259 14669.2385 9282.1237 22645.5489 4758.9135 4604.1676 4104.9145 3429.4633 308226367 amyA Carbon Cycling Carbon degradation Starch Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 4273.6983 49884.1749 26418.4917 12949.7485 2733.6024 3217.7613 3496.049 3699.5176 114856.4471 10415.5639 8159.5225 13740.0034 8618.2629 8618.2629 2927.0931 6194.3786 6277.1815 2196.7657 22060.5917 12741.1974 17110.9621 9520.8914 32411.7765 4695.462 3542.625 4116.4916 2213.8872 4744.7202 350569836 amyA Carbon Cycling Carbon degradation Starch Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 5961.7519 26226.6685 24559.0955 74199.7106 3061.1528 6312.0599 3273.6881 138237.9947 5333.0085 2471.8208 2471.8208 6260.0902 5190.1709 3053.3507 6706.4837 2451.0715 6605.4702 8350.7937 1876.535 3146.0586 6546.564 115400958 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 19062.2523 12135.4916 3529.0311 3681.166 11752.4131 2664.2675 310169.6768 4475.4741 17400.7728 14772.289 4662.0649 4662.0649 2778.8617 7312.7095 4861.7076 4536.6585 9394.0142 4304.147 14826.4939 8209.1781 31562.4579 14843.9858 24457.9005 5133.3526 7717.8413 4380.4851 118591564 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 10170.5662 6809.1834 7102.2863 9518.0901 213550.1438 8543.2829 4756.0761 2527.8902 2527.8902 2347.8013 7024.747 8136.1738 4764.0793 7854.1166 5253.5376 2632.4443 296169344 alkk Organic Remediation Others NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 9143.0203 4630.0943 4685.1839 11928.5773 3676.556 3688.4807 3686.8943 6704.2603 5765.4895 5765.4895 3122.974 31276.2033 4898.2893 6205.7069 8371.2089 4210.6341 4381.3209 7919.2233 4737.4155 12968.6846 11360.6199 5184.092 3125.7868 9131.66 4030.8928 403659103 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 3946.7397 3196.0221 2451.5977 27650.313 5131.7165 3078.0053 93269.3364 5851.4296 3555.9258 2221.6913 2221.6913 4504.1052 8152.7313 4921.0401 8533.8286 7299.9685 7754.5882 3766.3358 5252.609 7235.8936 17380.3575 3405.1512 5837.6026 5426.0035 4711.8674 4318.2952 4645.1764 8064.6634 146761193 fcba Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. CBS3 superkingdom:Bacteria;phylum:Proteobacteria; 5332.7859 12038.0394 7238.2533 2130.4612 2130.4612 3796.6705 327542356 arsc Metal Homeostasis Arsenic Detoxification Rhodopirellula baltica WH47 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 8327.1322 7623.5446 59201.2843 11635.5334 12058.5263 3528.5276 2239196 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 6073.2515 5053.2832 5053.2832 5862.3311 111019986 tfth Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4012.7916 9877.7451 3220.6585 3375.6409 2427.7719 59302.3185 4493.7262 3419.6332 4436.8205 2087.3402 2087.3402 2647.8835 3980.3232 2488.1902 4806.932 2840.9557 4269.5361 5921.6413 2601.646 4905.19 4974.742 217991208 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides] pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:[Bacteroides] pectinophilus; 6800.0446 5821.8627 2644.116 5282.3238 16485.1539 6360.0483 14389169 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 42272.3376 3593.4711 5972.9922 10939.1815 4373.895 259693912 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 22273.0748 3163.8493 2388.0984 67444.0359 6617.3672 3339.7672 3339.7672 2237.8617 2649.2945 2420.0844 3160.1248 2098.8135 21913663 Rubisco_Glau_Rhiz_Cryp Carbon Cycling Carbon fixation Calvin cycle Cryptomonas paramecium superkingdom:Eukaryota;class:Cryptophyta;order:Cryptomonadales;family:Cryptomonadaceae;genus:Cryptomonas; 11549.9607 2785.5832 2140.2392 6336.4301 1455001.8215 3667.4961 5064.2345 5064.2345 6084.6368 4687.415 5087.8691 7467.9494 4704.3923 2206.3858 4223.2071 3572.9316 12123.56 4041.5185 11610.7152 2623.8063 5118.297 3526.9642 8083.1796 126708356 dehh109 Organic Remediation Chlorinated solvents NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 5662.1659 4068.0595 3417.3124 2246.0351 22919.3219 4332.4446 1925.9203 2298.9096 374310639 chitinase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 5587.7453 319750377 amyA Carbon Cycling Carbon degradation Starch Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 12773.3555 21543.9305 9914.1877 4197.2996 6800.3488 22328.0735 8181.7984 3012.724 250025.6945 7079.2083 13756.1511 35637.3309 14038.2642 14038.2642 11414.4154 5309.4145 6321.9361 23463.4876 4029.157 2706.806 5737.2128 12057.581 2604.1132 11966.9462 13916.5426 11081.2407 5829.1303 10493.6428 67522288 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4831.0794 9585.9953 6051.08 2867.2374 2867.2374 3647.241 3336.6449 310767998 nitro Organic Remediation Others NA Erwinia sp. Ejp617 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 4808.073 6919.7354 64004.3706 4210.9392 4210.9392 6030.8776 2466.9894 9069.136 6373.0455 2200.1444 4300.0242 2879.1604 5534.8069 357041605 amyA Carbon Cycling Carbon degradation Starch Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1995716.8723 10936.2646 10686.9413 157322506 pcag Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 5247.786 4759.5544 4759.5544 56679174 b_lactamase Virulence Antibiotic resistance Degradation Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 4386.0788 9309.8745 2263.0769 6097.5665 2602.0442 5246.0298 3707.3096 3707.3096 2541.6476 6317.1842 7596.7615 3557.2459 3671.7824 2690.4053 15188.9301 3977.4925 14363.0796 4639.878 3480.9023 7648.4229 219938983 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3891.4744 19755.767 2993.3588 4855.8587 4552.3386 2992.7621 71420.4344 3931.685 26808.1939 8981.8761 14999.8981 14999.8981 3105.9746 9288.4694 6313.8648 6064.7527 5925.1508 2948.4898 4950.3851 12189.3826 7354.7767 12394.8161 5563.7047 11424.8843 6788.0616 4872.9429 7109.8744 4208.6597 4801.5318 29652564 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5373.2284 242132894 tehb Metal Homeostasis Tellurium Detoxification Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4587.9986 61358.8502 21243.2365 4513.6026 10195.6317 4957.9222 5208.9675 5217.2774 342248.5089 11010.0894 14516.0932 35198.3687 19371.8148 19371.8148 7534.5278 16192.7006 13030.3672 11590.8552 2977.9935 7763.2499 25942.0765 3030.8843 20616.2449 11505.2292 16434.8934 4335.8179 11537.8719 17959.3059 2647.1931 29523.392 330405552 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5800.0606 81116.5982 9315.448 5809.6701 375262814 nitrilase Organic Remediation Aromatics Other aromatics Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7104.9766 321162183 terc Metal Homeostasis Tellurium Detoxification Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 5977.8538 3892.1837 2874.5873 10588.7805 3922.1261 103670.8524 4996.3963 3498.4532 3498.4532 2797.2213 7816.5405 5394.9007 4078.084 4932.2377 3002.3436 4586.2379 5947.7476 4230.4307 7790.1764 3344.1236 3050.3039 6709.4499 172056791 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7474.5945 8342.6086 4336.4376 5248.5101 3179.9714 3179.9714 210634504 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 9840.267 9139.5793 5394.3639 5722.5347 5912.009 5388.2037 4639.8944 3153.5391 6185.5234 6031.865 2414.7777 4800.039 18783.2981 40253012 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5847.1626 2119.7331 29144.2068 1554.8135 2725.888 187425422 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 4913.8512 225699696 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. equi 4047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 11835.2953 288910630 ppx Phosphorus Polyphosphate degradation NA Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 7052.8962 5557.28 3905.0743 6669.8275 7256.999 7256.999 2995.0406 16859.7334 14952.9104 4698.9248 4296.5641 3115.949 3037.3726 2183.0345 95111098 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 9339.6518 20748.1545 12288.98425 6520.83825 18771.4012 12220.68045 31693.81645 25055.457 51567.26405 8397.16025 17258.8039 15311.6441 19837.35355 379009215 Sir Sulfur sulfite reduction NA Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 4554.5487 5866.1442 3046.7994 3434.1013 4023.9916 9775.5173 2426.7421 2754.542 3988.9862 372489904 nfsb_2 Organic Remediation Aromatics Nitoaromatics Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 15155.7712 2758.0892 4082.2351 129886.1505 3811.5467 12455.2824 9296.5112 4005.5666 223937402 vgb Virulence Antibiotic resistance Degradation bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 13380.4661 110337616 ppx Phosphorus Polyphosphate degradation NA Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 21993.8822 21453.4121 5053.7246 4194.076 2558.0368 2558.0368 4781.1526 16756.6034 9073.3309 2363.8664 80253.1349 7684.129 5408.9038 2022.2644 3136.462 3591.6996 269211188 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 6713.5325 9791.7451 8761.3678 8026.4577 2139.6813 2139.6813 6225.5348 59120.731 6192.2957 297154738 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 12154.3635 5739.8795 10843.385 4257.9441 4805.9093 6869.7466 5509.6799 6105.781 2027.3391 3767.5193 6257.4268 112462565 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4177.9238 8440.4858 5382.4915 2642.0749 407279269 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6385.8027 325680441 pme Carbon Cycling Carbon degradation Pectin Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 5909.6007 2997.1772 4021.5333 3724.9741 2525.25 2525.25 3152.4685 6643.0128 4139.9197 3741.0893 2287.9245 5793.9547 8855.4946 5282.5431 2469.4025 2288.0636 5534.6306 32480569 gdh Nitrogen Ammonification NA Spironucleus vortens superkingdom:Eukaryota;family:Hexamitidae;genus:Spironucleus; 5395.9633 5998.3681 58447.0028 6703.5573 3694.8369 5155.7235 6751.1919 212541749 axe Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 7715.3412 5596.4576 2509.5945 4956.816 2077.298 3784.2806 8098.8633 68894.1267 5072.4402 3526.2433 10109.1904 8728.9433 8204.0604 4244.2301 5417.5569 2237.2683 6632.0844 2700.9779 4898.8715 5649.3116 2028.7266 2889.7502 3008.6514 8038.9058 170777882 rubisco Carbon Cycling Carbon fixation Calvin cycle Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 4182.2618 3345.8673 10445.5379 58617.7251 4111.1457 254474672 soxY Sulfur Sulfur Oxidation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 11281.5108 8454.0694 4500.2964 25276.9408 2349.1293 213409173 amyA Carbon Cycling Carbon degradation Starch Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 6924.5802 28389.0808 84133.9835 3884.1461 2962.5384 5893.8474 26180.1772 16403.0852 118471497 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7025.8567 5556.4487 4012.7987 4511.4796 4511.4796 6070.4264 23015.4004 5127.4634 2086.0183 6594.4269 1756.9698 3044.0795 16982.0462 2139.1629 260591791 pula Carbon Cycling Carbon degradation Starch Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 5417.934 3173.876 2489.0664 3496.5701 4264.0224 88043.0008 4092.5034 4226.7164 3222.3029 7730.7814 4641.4674 3737.7269 5910.1127 2658.1885 2379.4754 6222.476 4024.5755 7772.7586 2220.8538 3323.5485 3168.351 2177.7428 4992.337 38427022 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22023.7385 3782.4141 12334.6619 2683.1345 6026.8064 2768.5975 12374.9064 6364.4372 7699.7503 7935.1213 8643.0131 3411.9705 3996.5414 6346.9117 2364.1659 10796.0242 8094.2512 4566.0987 5666.3839 4936.5794 2748.689 7946.6792 260553088 terc Metal Homeostasis Tellurium Detoxification Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 8515.8913 4017.5922 9465.4456 10511.7222 3296.233 76882427 mer Metal Homeostasis Mercury Detoxification Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 5983.0135 7311.7789 4848.117 2210.3678 2210.3678 5320.3932 16570.672 20333.3647 3957.5818 145322142 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 10197.1969 82653.5294 1937.7335 1937.7335 3236.2093 24182.5099 3039.7013 2982.7578 11455.5543 6103.6877 86196020 amyA Carbon Cycling Carbon degradation Starch Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 9062.3637 32525.5248 5093.8697 5093.8697 339282953 mnp Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 6341.998 14794.3039 9253.7837 2305.6172 7574.4499 2913.3235 3357.4353 3438.1026 81215.2438 4321.6238 5718.0953 10896.5844 3577.8415 3577.8415 4700.4303 5395.0418 4776.9048 14514.0674 2265.938 52787.6208 12725.6707 11969.7995 8196.8512 7139.7477 5304.9333 184200303 amyA Carbon Cycling Carbon degradation Starch Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 6230.119 25802.7429 16579.7456 3482.8239 3546.7513 7629.114 3626.1802 78635.9821 3784.6813 3838.6597 7616.7385 28501.0845 28501.0845 14172.3514 9071.4283 4319.199 8772.704 25787.8069 3347.2749 22025.6144 2445.0441 14645.3597 8125.6834 14404.9237 5208.5124 5470.2861 3359.6218 2523.7179 221533576 nhh Organic Remediation Aromatics Nitoaromatics Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 10084.1679 9778.1669 3374.9276 2650.959 3964.3007 8230.4148 3440.9179 114148.5084 10708.8856 5618.8056 5563.1852 3219.8176 3219.8176 4795.0124 8109.3966 7291.8582 19529.1272 11545.8261 2739.41 2855.3969 9003.4272 3373.9751 14603.7499 8233.0393 12429.63 4341.4728 5364.9079 4442.0154 5166.1357 5886.9411 146299761 xyla Carbon Cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 5914.6955 76667412 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5200.4023 6829.3966 2627.6892 2627.6892 56962392 cysJ Sulfur Reduction NA Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 4649.4135 2294.039 2498.0961 6718.2681 4259.8447 100075.9945 4862.1026 3513.9845 3621.6977 2413.4863 1912.4779 7404.7635 4077.2816 1839.1727 3145.3679 3090.2289 2595.2806 7232.4834 158138755 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7977.115 2815.9221 1984.0783 4092.4634 3765.8521 3970.066 77610.2096 4986.236 6242.1511 4293.104 4293.104 4156.989 7292.4658 5253.0961 7433.2155 6224.9959 9253.4993 2342.5016 3309.6486 7127.3694 3321.7128 11309.5519 5672.3955 8322.1355 2880.6808 4514.2161 5484.2156 2632.8026 7431.5319 170112925 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 185867.008 4727.7327 327410193 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4502.1695 4468.5738 61646.559 3839.1496 4602.9523 1919.356 1919.356 6127.0864 4033.881 2203.9382 7407.1374 2150.0173 5720.2679 2138.9653 1991.6955 296091792 chitinase Carbon Cycling Carbon degradation Chitin Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 37237.3076 5099.9536 2681.7424 33467.7693 11795.3785 131140.6251 7311.3315 5132.9461 3730.3377 3730.3377 7536.0513 8723.5697 1594352.5496 3595.5338 5655.5979 3132.6614 16887.0432 7220.0343 2213.553 3535.1218 6815.3366 7217.1365 387174198 amyA Carbon Cycling Carbon degradation Starch Bacillus amyloliquefaciens Y2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 4708.4669 10649.5719 332337261 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 4664.0835 2842.363 2622.2823 15425969 phdci Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4555.3758 17091.9281 13791.0258 4660.7634 8364.0756 3645.6517 1888.3395 1888.3395 2399.7404 4487.8588 10537.3469 5990.2842 66208.2713 4460.8542 21904586 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus pyogenes MGAS315 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 4775.986 2693.9079 365902117 badh Organic Remediation Aromatics Other aromatics Lactobacillus malefermentans KCTC 3548 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus malefermentans; 5727.8867 7364.8951 12276.9771 168193898 catb Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 17649.9794 6830.3079 6259.9595 2618.9811 2618.9811 8680.6548 7158.4072 7212.689 8685.9554 4907.1223 2707.1933 3099.5858 320451162 SoxA Sulfur Sulfur Oxidation NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 7546.3675 5508.124 2497.9587 2497.9587 26520.3476 67550377 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7583.7432 254501330 dmdA Sulfur DMSP degradation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 4063.1552 321161583 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 7091.2232 2389.8839 5242.3363 8947.2217 3795.8623 3917.5267 6960.9828 108030.53985 4631.8287 8465.2861 5635.1543 6712.7354 6712.7354 7516.1803 15838.1282 8690.4111 8817.6695 5668.5942 3698.797 4389.6438 7408.3615 12810.1896 12137.5806 8034.1286 13976.9763 3456.5432 5717.9519 8599.0897 4114.0999 8309.4973 340551518 FBPase Carbon Cycling Carbon fixation Calvin cycle Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 5318.0231 195540318 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 9120.1082 3806.5358 3642.1232 116622106 xylanase Carbon Cycling Carbon degradation Hemicellulose Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 5454.5471 22783.4031 10463.5599 4176.2259 100764.679 4094.5904 6367.3737 12889.7675 4886.821 4886.821 7535.1273 4322.1465 2902.5557 9579.3367 7909.6788 8060.1454 2129.4094 3069.785 4514.3984 393778372 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7801.6091 21313.8717 19518.0439 114593.7245 8788.4483 5473.8347 11992.8231 11992.8231 5925.1874 10752.8883 5912.8294 3421.1759 7349.8411 12069.4484 4856.6813 6370.773 4897.4811 4334.0345 18086.2216 75704170 nifh Nitrogen Nitrogen fixation NA Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 3825.2511 197359208 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5208.1565 2452.6526 16772.698 8081.6186 7586.1944 7793.3814 5917.1598 5917.1598 4747.2793 5158.6431 2912.0465 8971.6568 7940.6143 3214.4336 15076650 merb Metal Homeostasis Mercury Detoxification Bacillus cereus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4446.5328 40071.2296 13177.399 2775.7387 5995.6545 16743.1353 3607.1222 4669.6933 213921.4719 7391.9775 7944.487 19307.8614 8611.4902 8611.4902 15594.5333 7549.778 6363.3728 6298.5966 27795.7549 12717.0791 5054.9583 8579.6936 3742.7088 5541.4155 4416.0978 402511426 bphd Organic Remediation Aromatics Polycyclic aromatics alpha proteobacterium IMCC14465 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 13848.1363 3950.07 2793.9238 3031.2719 2872.5934 133948.6202 5270.6291 4979.9272 6245.6039 2344.2536 2344.2536 4685.0128 6061.0474 4613.0611 25163.5933 7735.4204 7090.2716 5883.8668 3415.3163 12130.4202 6589.6655 7115.9927 2355.0971 4269.1619 4080.3521 2213.8514 6383.5146 407784999 alkb Organic Remediation Other Hydrocarbons NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 16006.7173 2656.994 3205.258 4049.2554 66021.2045 3462.0085 4734.0327 2613.1045 2613.1045 2846.7148 7506.0058 3481.435 4743.0473 2150.9095 2055.0083 2072.2094 3422.5174 5221.1129 2060.5346 3012.5156 83414995 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Termitomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Lyophyllaceae;genus:Termitomyces; 6868.1434 3760.2806 5540.365 4562.6268 2699.5752 83538.4743 3611.8947 4931.6517 3565.5343 3565.5343 3468.4871 12047.927 6303.6393 5579.2665 5558.0621 7313.5071 2265.6685 3322.3402 8437.9604 2949.9514 12766.8838 6237.6952 10160.0761 2140.7888 4798.1495 4465.0318 5718.3901 5447.8496 198036974 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 5061.8404 2247.5792 4778.2452 6193.9518 2196.4332 2196.4332 4968.1794 32150.7502 2898.6999 2654.8425 338209454 xylanase Carbon Cycling Carbon degradation Hemicellulose Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 4106.2592 5149.8821 12135.301 51243149 pcpe Organic Remediation Herbicides related compound NA Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5452.6965 82099.2781 169793466 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6416.9129 3293.4518 5212.2637 5136.2838 9374.8231 2769.2652 6238.4158 3570.3989 87301298 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10028.5588 5809.7225 95928311 mer Metal Homeostasis Mercury Detoxification Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 5186.7437 4018.1127 322369108 amyA Carbon Cycling Carbon degradation Starch Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 8135.4546 46448864 mer Metal Homeostasis Mercury Detoxification Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 49899.6536 3216.409 3133.2445 4401.8337 114845109 arsc Metal Homeostasis Arsenic Detoxification Thermoanaerobacter ethanolicus X514 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter; 4469.6007 83776.1267 4689.6917 27469.852 2641.0076 9914.1894 87281179 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8587.8269 7103.742 2189.1891 8826.3746 6664.0368 5337.2945 2579.8584 157679058 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 87005.2888 9527.6495 2093.1392 4526.9998 169005276 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 12961.8365 35203.3463 1976.1376 11838.6267 6122.2459 9628.1203 3926.4379 3926.4379 3656.7615 13024.7011 45283.3713 6902.7753 7541.7505 4453.0266 4341.8488 6895.2151 3174.1311 8731.1499 5317.2259 4003.2157 4784.2566 13490.4578 169759133 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4490.8888 115519020 fccab Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6917.0966 5400.0095 2907.0762 227090474 ppx Phosphorus Polyphosphate degradation NA Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 6173.0729 346993824 atzb Organic Remediation Herbicides related compound NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4232.8004 6875.5189 3859.2455 13153.3428 3051.365 88602.2355 4435.6285 10205.7107 9405.5557 2403.8472 2403.8472 2907.9236 11015.5479 7755.4716 3902.3378 3502.5795 3358.2688 7659.2318 2593.2888 13739.1102 8042.6721 7230.888 20206.5852 7665.9849 4578.543 6255.3789 311064854 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Bifidobacterium bifidum PRL2010 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 4253.097 2600.2042 2586.4304 11533.7988 2504.7118 77131.5653 4042.5372 2162.7638 2162.7638 5894.8117 11660.8677 4403.5685 3494.5495 5951.1861 2246.2885 6501.9228 2202.4302 9472.4866 4041.6233 5127.0985 2647.2471 2929.5611 3728.5765 3001.1925 5685.1358 144905951 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3815.6378 3065.2233 2530.6294 5474.1922 5116.9698 7898.6327 3766.2926 2509.783 357172835 dsra Sulfur sulfite reduction NA Clostridium sp. DL-VIII superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4709.123 8285.3815 2998.9878 22292.872 4382.1954 317969556 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4269.4015 1962.2958 46989.7616 5229.6933 105342.5052 3742.6147 9592.8093 8384.3871 1918.4378 1918.4378 2849.1847 6637.8294 3798.9199 6421.3304 10405.218 2196.3883 4681.3559 4641.7488 3798.709 13121.6023 12789.1433 254786342 xylanase Carbon Cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 5106.1877 7489.0013 2013.0487 2013.0487 3276.2038 43913 pula Carbon Cycling Carbon degradation Starch Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 4983.4075 7843.829 5909.7513 3598.2235 4935.8604 7673.5637 9788.9647 6294.7625 6926.9508 6926.9508 13923.3514 4646.7841 6466.8406 5700.5671 14459.4773 17404.3587 4747.5669 12376.6566 5161.1694 11121.6143 6239.1017 5327.7973 9478.5915 3137.5705 5117.3416 385281205 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4324.1341 30297.2104 7271.9594 4692.4477 3459.3953 6130.3287 3709.622 72481.5149 4681.9579 7003.3866 7353.6042 7353.6042 4336.9127 8864.2965 5537.0406 4816.2977 3027.1557 4188.9155 12967.2283 12682.674 12063.7814 9096.0604 4104.7397 3814.0783 4884.1039 72840.975 37200443 amyA Carbon Cycling Carbon degradation Starch Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 15049.1767 4371.7518 2975.9617 8657.5855 20056.5783 5346.1036 5020.0992 71625.0742 5966.3064 5966.3064 18665.763 8354.1404 6071.8961 10912.1649 16890.5095 5020.629 14507.3434 11154.9252 43834.6343 4529.4516 21568.6941 3703.7414 3027.4097 8945.4091 407803058 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 9384.7153 30600.64 6096.5328 5983.3413 4293.6595 9054.725 3805.7106 125867.3676 6205.1077 6905.3086 8376.3329 5627.8546 5627.8546 8271.551 6604.0581 8982.615 5086.5168 2189.8726 11115.0248 26220.356 3833.2012 17563.7666 15517.4828 13697.6933 7268.5495 10065.918 5405.3734 3257.2357 307129345 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5378.0091 3199.8315 3421.0159 5686.6276 211956685 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 16253.1621 261415136 mannanase Carbon Cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteres;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 15948.6265 10442.3042 4145.5938 9145.8494 3354.4784 4118.7051 4175.527 120237.2785 8994.3533 6642.218 5185.2412 8238.4186 8238.4186 3623.271 9507.6922 9167.1701 5619.8223 9500.0292 6395.928 3154.6019 2926.6299 6692.5281 5928.0393 16418.5041 6936.0002 10035.5995 3372.1829 5470.5966 7407.2588 2996.311 8348.6749 336099756 dehh109 Organic Remediation Chlorinated solvents NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 4119.0574 3983.8235 3460.3296 4079.203 3981.76 80882.4745 5161.7561 2048.059 2048.059 8308.8192 5183.6965 5777.8538 8492.7591 10556.0244 6075.7645 7794.2291 3118.5026 3745.1137 15491.5554 312131255 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 6453.4269 23492471 vana Carbon Cycling Carbon degradation Vanillin/Lignin Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 531993.1478 123443264 arylest Organic Remediation Aromatics Other aromatics Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 20318.1875 16612.8195 56314767 ebdabc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 11794.4217 53348.4563 5692.7918 4302.7601 3673.6302 3673.6302 5747.7171 3300.3798 9028.1054 4212.9688 3387.0299 10486.9539 346223725 xylanase Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 6040.4496 5696.1713 8927.3355 3578.9382 5074.041 6943.9704 134453.0876 4610.3513 5840.8972 7897.0446 3781.9592 3781.9592 3024.1932 5620.6045 5298.8902 29663.1342 9094.3604 13418.667 2473.9324 7700.2319 10244.6012 6477.2118 18820.6668 7037.3061 10724.4981 2750.1298 5863.864 6732.9143 4156.1892 5526.1087 255321238 hcab Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 4035.0777 3721.5644 2871.6316 4525.2297 3434.7294 63894.6213 6797.0696 4511.6851 7249.0341 5470.5277 4633.6309 6221.9728 2625.67 2729.5782 2646.4119 12270.9029 6928.6802 4188.4119 3566.3606 4576.754 3287.4634 5323.1142 14025552 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 10391.8408 2930.0054 5103.4494 4198.6945 4875.9427 65915.1935 7846.0222 22847.288 4012.327 4012.327 3075.1409 9317.7802 13273.8015 5192.2261 11727.2409 3518.6339 11373.2477 4810.1521 21265.2945 4778.7893 7963.58 3448.9696 18901.3815 7073.0736 2448.5989 9047.3148 110632258 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5678.2317 8517.2306 90138.212 8812.3355 4134.5623 3239.2389 3108.4998 4902.7322 375160397 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 11824.6133 12764.6153 7419.9788 2683.5773 10585.1764 79543.2428 7268.0378 7703.8263 4799.8288 4799.8288 7237.2672 9062.7039 8670.5747 4539.2715 10093.7378 3145.6099 13790.9515 7143.7833 6837.0026 3135.7772 2777.9025 7040.3741 4606.0508 212171454 alkb Organic Remediation Other Hydrocarbons NA Marinobacter hydrocarbonoclasticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4465.6208 22672.9749 23764.1335 23764.1335 6298.4896 3016.8707 41386489 phenol_oxidase Carbon Cycling Carbon degradation Lignin Mycena zephirus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Mycena; 18790.5508 3646.2738 2900.1776 7091.3131 3823.2449 5263.8958 11711.7089 6862.059 2708.0548 10664.865 5281.634 9162.4089 2467.7383 2936.6022 3692.2544 2631.4743 6166.3184 317397606 atza Organic Remediation Herbicides related compound NA Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9554.6577 325531544 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8487.2275 116743267 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5639.7296 29130.6008 11645.9334 4389.6173 6556.8709 10602.3178 31912.0505 6651.014 212066.6552 19744.9668 14351.9085 17604.4577 9686.6735 9686.6735 4181.0322 27195.977 12998.4914 14329.7467 9157.1315 9220.7663 4581.0212 7409.4476 15892.7801 4132.6879 26960.312 18143.1913 15162.2977 6683.3844 7328.8528 11895.5915 4015.923 7763.3565 146192107 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4317.8073 7799.8967 2583.0831 4939.0752 4069.7516 5677.3192 3367.2237 240431.412 4425.4026 3656.598 19752.978 8767.1578 8767.1578 14251.627 6313.5873 7372.7236 3296.705 3577.354 7256.1503 6075.1943 33364.1476 5162.1975 7173.7275 5419.204 2704.2401 15890.8926 2022.7014 374387517 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 6788.5412 6979.3316 9609.6431 4049.8606 7035.5314 5656.7297 2416.9972 56804.37 6795.2347 6326.2576 3472.6589 3472.6589 2983.322 5140.6451 2415.6341 3346.4098 29466.4619 5482.6554 7259.2142 10693.6796 8426.35 4020.9627 4721.3425 8792.0097 2248.553 7111.6386 47601204 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5836.4211 11806.2312 55439.3618 5517.2681 18240.9936 36686.4997 7672747 xylanase Carbon Cycling Carbon degradation Hemicellulose Azospirillum irakense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 53464.3869 377532580 cdh Carbon Cycling Carbon degradation Terpenes Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 34318.2052 2960.1309 92950.1042 5139.4484 15551.2676 5506.6412 5506.6412 338757091 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6566.0255 23056.2673 12941.2571 3327.7152 2830.5271 125411.9317 4715.0272 4390.8305 8634.6839 4104.8601 4104.8601 6746.5729 4712.6266 6321.7371 3241.3424 8386.127 9231.784 6498.2263 7172.0088 3370.8622 2818.9817 384151164 glucoamylase Carbon Cycling Carbon degradation Starch Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 31878.3757 5252.31 2945.5998 2504.7137 8308.9436 24140.1651 2363.3074 2732.2373 2744.7142 7936.8418 74422173 arsc Metal Homeostasis Arsenic Detoxification Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 6453.1094 12955.77 4808.8726 3135.1507 10425.4129 65801.8556 21713.135 13949.4876 5807.3872 14330.6902 9267.3305 9267.3305 6796.2845 14075.7324 5714.7758 4901.8842 50483.79 11166.2659 6513.3285 11878.8609 8353.1961 32083.8192 4775.1393 6463.9327 10953.515 37179.0006 8282.6207 3115.4744 23569.7685 297627910 ppx Phosphorus Polyphosphate degradation NA Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 4690.9286 309398061 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4383.1932 9303.4072 2488.8308 2488.8308 150271801 ppx Phosphorus Polyphosphate degradation NA Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 37935.657 19157.4593 7668.4611 3998.2322 4309.866 2282.8235 2282.8235 6563.4861 6931.176 5303.5841 4518.884 2295.5625 2359.5052 2325.8141 6130.817 1810.7754 6427.884 3721.4705 365851034 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 4222.558 84130.0222 24466.9952 21172.2426 6859.2675 6509.6176 61344.4425 2044.8317 4279.8374 2256.7766 163861460 gdh Nitrogen Ammonification NA Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 4485.4115 5310.2366 4922.2271 96856.56 4148.558 9310.7736 1877.7132 6345.1138 46577880 rubisco Carbon Cycling Carbon fixation Calvin cycle Solemya velum gill symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6059.4784 157404688 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8891.5748 1731.1626 94983087 silicon_transporter Metal Homeostasis Silicon Transport NA 7913.5667 2101.4576 7818.0326 2292.3422 3914.2824 5816.3901 14217.0819 2127.7714 315491079 gdh Nitrogen Ammonification NA Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 4526.4639 17310.1375 3138.2101 99509.4958 3557.0505 4395.1469 3956.3814 2145.2608 2145.2608 10358.6086 5648.7112 2751.7764 11222.5805 2227.1356 15812.0507 6094.5898 7458.2536 3283.2809 4839.6123 149927842 ppx Phosphorus Polyphosphate degradation NA Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 5070.037 4229.1983 4593.639 9952.0456 3339.6224 7860.4846 153011149 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 6085.713 3396.5504 90954601 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5589.8542 13500.7989 6302.4262 4988.1286 7432.0335 3771.8311 43377.297 3966.111 273825.4295 8050.9553 17781.6735 35698.4854 15849.0483 15849.0483 3018.7141 12419.4075 6402.0496 6983.3641 2215.4298 3630.7061 12965.6661 3642.214 18919.401 11614.2816 13514.1848 4370.9658 5014.7375 3478.6778 4147.0584 5726.3716 312865284 gdh Nitrogen Ammonification NA Streptococcus downei F0415 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus downei; 19903.2687 7285.4405 3708.6323 3371.0509 3231.9662 61230.3559 6627.7665 7657.9303 943858.9431 14656.8422 6096.7308 8953.1067 9780.498 15193.8048 5365.4821 5668.8472 3101.2216 17103.8243 5673.9802 2978.045 374847830 linb Organic Remediation Pesticides related compound NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 15443.9315 123200426 Sir Sulfur sulfite reduction NA Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 4392.622 4533.9207 1846.1602 1846.1602 3383.472 5040.7379 5407.3376 3439.5216 2404.1281 377528250 cmci Organic Remediation Aromatics Other aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 6548.8492 3422.767 4938.6978 90240.2267 3951.679 5459.5919 3040.4101 6141.5131 4556.4138 5259.7558 8441.4324 7442.1871 2809.3046 19422.0493 5853.9866 2929.5846 4443.4613 4788.3381 333828839 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 18527.6217 339790744 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces plicatus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4200.0723 15980.2894 11753.148 3881.9866 3756.6478 3756.6478 6313.4232 4086.6194 4307.7599 5802.7885 11994.829 3387.8802 8929.6585 2688.2252 3005.6939 376399419 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella oxytoca 10-5250 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 4636.9134 7742.7398 2997.4692 3204.6166 3548.0004 65762.3409 3737.5966 4123.7199 6321.3696 3078.1791 3078.1791 3131.4918 5424.1485 4766.6876 8562.8142 2706.2797 2663.215 421953170 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7670.8348 7594.8025 4777.6375 8302.229 8336.5814 8336.5814 25629.0285 4052.9879 4395.656 4740.8769 12877.4266 3555.2999 10918.3948 11727.4258 12155.3198 6084.4099 2733.1388 4604.4536 4258.0271 74038412 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4560.1767 1828.74 2329.1571 3071.8495 74817.4731 3388.4561 2526.3899 2348.1025 5542.7808 3042.601 3060.3145 3039.9009 2316.8199 342800000 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4342.0631 303249302 ara Carbon Cycling Carbon degradation Hemicellulose Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 5017.9057 3780.5555 3780.5555 6087.0417 119459813 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4542.6279 16793.7003 3069.2467 4622.7952 13260.2044 1923.5289 11496137 endochitinase Carbon Cycling Carbon degradation Chitin Ustilago maydis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago; 8401.2927 2105427 dehh109 Organic Remediation Chlorinated solvents NA Pseudomonas sp. 113 superkingdom:Bacteria;phylum:Proteobacteria; 6448.6539 12424.4688 4365.5691 4153.1436 8868.8793 6732.6543 5862.5287 6277.1842 3053.9546 7112.4548 2566.2516 9052.7563 5580.6639 3457.0493 13931.4123 2637.2445 5188.9004 346981607 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 5113.7704 2521.4951 2124.5372 4595.7767 3222.5337 4089.6526 90261.1052 4503.4294 5712.1052 7030.7469 7424.7419 6409.7856 4003.6131 5666.4716 2881.0783 8140.1301 4974.6336 6037.6735 2939.4466 3377.1948 4239.5265 398166060 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. GM41(2012) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3868.5918 7156.1488 1799.527 4191.6705 5837.4872 5177.8417 2720.2397 9018.0561 3898.898 4996.3599 2079.0698 6126.3924 291528356 amyA Carbon Cycling Carbon degradation Starch Eubacterium rectale M104/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium rectale; 22310.8186 219110645 Sir Sulfur sulfite reduction NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 5093.0772 2815.6539 3640.5016 3617.6489 4619.0635 10159.9758 10159.9758 2771.5705 6034.9684 6110.6695 4238.8618 70633.5872 3996.7795 9270.4746 6526.9505 6105.922 1728.5876 2618.6288 13476.2202 3493.0912 9643.7311 85821599 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tenacibaculum sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 4481.8533 4794.0454 5428.4935 4007.6563 3050.7813 4525.8614 4097.5524 99845.5092 4426.1194 8262.9137 1905.0991 1905.0991 9108.97 4307.6071 6870.8468 5369.932 2730.7663 5617.9019 2232.3641 12559.8713 6006.3277 8560.8598 2460.1209 4750.0574 5887.7532 2178.7605 8313.4679 46850256 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5807.0038 9619.3932 2129.9846 4544.6961 2426.5016 2426.5016 6829.9842 3083.9722 9186.5019 3446.463 22260.8063 4002.5071 5882.2317 2074.6393 2900.1399 72395481 linc Organic Remediation Pesticides related compound NA Methanosarcina barkeri str. fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 5499.7761 10570.6635 5282.9083 81108.4304 5908.2035 3760.7598 354681578 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4825.6524 3640.7552 336025618 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7768.2001 29046.8408 5486.5567 5349.6924 36052.198 3418.5163 83051.1683 6548.1302 9855.3941 5140.1729 2959.6423 2959.6423 17783.7972 6639.6242 11366.7605 5053.5912 3960.9036 3174.2763 13269.6959 2844.4305 14925.181 75484.9148 11379.2772 2795.409 5122.1371 4934.8925 2742.228 392373131 phta Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. 68b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7083.129 3398.4774 3877.6674 2890.0977 94471193 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6297.6871 6264.161 2864.9735 2444.7095 3839.4268 3783.9437 2582.6236 82307.3132 4182.5231 4741.8617 1976.4064 1976.4064 5223.7855 7417.8396 6030.914 5500.3174 7892.6878 7021.9326 2807.1969 3188.4869 8403.5218 3250.4547 8934.2554 6234.1803 7084.1387 3567.3841 4287.6768 3752.4896 3437.2367 13030.9415 195537591 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4428.1486 5137.4718 4758.6164 3502.4275 2421.1982 8287.744 4568.8956 365759831 Sir Sulfur sulfite reduction NA Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces;species:Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 7750.7428 373233021 xylanase Carbon Cycling Carbon degradation Hemicellulose Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 11797.3852 197333186 amyA Carbon Cycling Carbon degradation Starch Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4855.2625 32222.4578 1918.7016 1918.7016 2598.7405 170942564 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 5884.2779 3931.9705 3483.8765 4087.5202 149811535 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 23555.5999 39268.8869 3004.7113 4931.8065 23851.2138 23851.2138 8877.4606 46981.995 2912.2702 5765.7509 3045.8229 6581.8287 6048.8269 2425.9403 4883.54 3710.819 4593.2139 163261389 catb Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 4332.1205 7956.1662 2849.0411 4786.1923 3026.9846 22015.6131 12742.3941 16416.2903 5833.6503 11708.5115 6374.0226 6374.0226 2549.2047 13708.6096 12000.93 4755.0534 244203.8247 5735.9558 6308.4038 6309.6685 8014.8166 16013.8328 15011.6918 3453.4243 8826.3763 9009.8167 8339.9381 12665.0155 335044065 urec Nitrogen Ammonification NA Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 6209.5921 9069.8097 3267.5933 6085.9314 2194.3829 5441.4411 283992824 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 5261.4482 8754.5679 4377.2211 2317.9111 7209.7777 6646.5238 7116.4823 2691.4011 6809.8038 5274.6626 7092.5002 4433.148 4433.148 5495.7593 22633.8127 8681.9661 5482.8668 23038.2192 7925.8743 3415.546 4564.4679 15638.4444 6028.3444 20716.7693 8458.213 12614.7194 12683.4336 13334.3133 7995.882 3051.5055 12152.4224 3660499 xylanase Carbon Cycling Carbon degradation Hemicellulose Claviceps purpurea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; 4112.8745 23428.2389 4920.2916 3101.2919 3160.9475 4738.7484 5428.5658 4103.7653 120692.052 8906.7259 6189.4253 4874.3171 2260.0757 2260.0757 4230.2879 9242.6427 7362.4264 4828.5951 4556.8242 9844.2805 2301.401 3569.5926 10701.2558 4155.7184 13700.172 17128.3765 11969.3716 4054.3872 4930.3807 5230.4377 4378.6826 238023355 metc Metal Homeostasis Mercury Detoxification Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 4114.5155 2322.244 3316.7925 60433.7012 6107.6447 2248.0696 2248.0696 6484.1097 4277.0571 2126.5533 7034.2687 13045.5891 2296.6567 3226.4534 83577923 terc Metal Homeostasis Tellurium Detoxification Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 55415.4726 4429.5993 2339.2764 13781.0949 116333111 ppx Phosphorus Polyphosphate degradation NA Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 3809.2347 13446763 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5248.2081 39404.3635 5370.1516 431665.0235 4412.2091 5436.1928 8567.714 65772.8845 6012.5011 3893.3864 3363.9588 2697.6416 2188.3732 2783.8834 3769.0145 3633.5054 3321.8818 302464010 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces himastatinicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 4093.0041 2510.2893 3539.1569 3539.1569 9601.4025 26157.0048 3341.4179 2342.1413 5279.4772 8979.3885 4234.9041 5219.9805 2742.3793 3006.6563 3126.3856 357384732 FBPase Carbon Cycling Carbon fixation Calvin cycle Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 4790.7804 2504.1993 2755.5727 2755.5727 8507.3581 3096.5253 94471349 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4424.017 3127.8332 3162.3697 3700.4535 2911.0232 119536.4645 4823.1883 7603.0374 2420.8205 2420.8205 5316.8097 4054.4909 4276.9427 4224.1157 2287.2898 3415.3415 2296.2182 2090.9054 2696.8134 3162.9919 5481.6344 347588329 trza Organic Remediation Herbicides related compound NA Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 5933.8349 14682.8684 29927.6982 4373.3276 4323.6402 3817.4761 132511.5855 4283.1687 12146.8993 10194.5808 33714.0149 33714.0149 4031.6359 6606.5922 5256.2464 5769.7566 12922.436 7597.5672 2838.2149 22012.3866 6930.1106 8050.0336 2936.0284 4593.236 345014949 pcag Organic Remediation Aromatics Other aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 4615.9481 7812.2012 7279.4991 13213.5123 2318.2053 148242019 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4059.1487 11443.5568 5381.8431 1747.8229 149983 adpb Organic Remediation Pesticides related compound NA Mycobacterium sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 34027.3278 2903.4437 2062.2867 3582.4873 411261.4172 5015.5402 8326.5234 3708.8872 3708.8872 5765.1859 4415.8049 358456363 cutinase Carbon Cycling Carbon degradation Cutin Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9173.3745 9231.2151 2987.4344 62350.5785 4785.1512 7232.0358 4550.628 4694.9555 4694.9555 44553.5872 42964.6075 4587.4636 9929.6444 2869.065 11277.3269 6728.9228 8216.3254 3990.1232 3267.8032 83643339 amyA Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 5970.6572 12254.205 15456.116 2818.1858 6338.7848 5388.4562 2602.3437 6278.0074 6329.2847 5100.3785 2518.6213 2518.6213 5647.7895 5681.1908 16846.9242 5511.874 15072.6403 10314.5736 3057.3785 9287.4213 16129.7362 8435.0343 6815.1864 23590.5326 6043.5122 2543.4978 8106.4971 157011584 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 4072.7816 3962.0874 2139.9202 2653.0254 291516473 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. longum F8 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 4939.3756 2200.4228 18779.4813 3313.8787 2360.4213 6049283 nitro Organic Remediation Others NA Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16896.0399 12956.0165 12473.3746 3428.3694 7201.8473 4218.05 3077.5784 110202.9256 3822.0757 3640.9587 11243.7177 4911.8733 4911.8733 6839.4458 4771.4836 6557.221 9071.86 7140.7771 3107.0277 9347.3466 4457.5934 8013.8419 3555.7965 4253.5507 3512.5193 8064.2104 116805049 xylanase Carbon Cycling Carbon degradation Hemicellulose Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 8611.5536 5456.3644 66547.6984 8670.8154 3685.4296 311113716 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 5518.6723 6964.4685 2269.942 6378.7321 147246.9841 2249.6272 2249.6272 12669.0056 2306.9773 5783.7027 2053.3418 3640.2485 16279.1933 4658.6099 383640199 ppx Phosphorus Polyphosphate degradation NA Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 4546.7828 16595.4431 6343.0822 2757.4012 2480.3667 3128.2359 4326.5999 73621.6596 7849.6369 5175.1333 6423.9855 9604.9339 9604.9339 7601.5273 4827.7458 3710.679 9130.9784 8488.5637 4775.2881 5260.502 2677.6346 3116.5175 2518.2412 254271935 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 22157.5879 9168.9794 11819.3013 5203.419 3612.0496 14549.7932 9291.2568 166565.7276 6095.3235 5564.3821 2923.3371 2923.3371 4147.1681 7156.9294 4069.8983 5341.86 4011.4502 2798.9692 19214.1441 8949.7709 4981.0522 5137.3153 17865.57 160429441 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 5665.5581 4393.6771 16622.7007 3797.3383 3797.3383 12887.8348 2172.5375 3263.0662 219965598 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8436.5554 285027023 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 6206.4718 10656.441 5535.5041 9968.8177 3576.1744 13434.9607 4323.5712 128919.1304 5976.1568 11489.1127 8974.3927 4458.2125 4458.2125 26552.691 6811.2774 12765.2791 12242.156 7073.0446 2838.4956 9515.5176 16771.6036 3573.7126 90442.8865 10306.1659 11814.1696 4228.6843 5619.4047 7342.7971 4629.6137 14003.1689 152990575 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratiruptor sp. SB155-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Nitratiruptor; 3841.4159 212009340 rubisco Carbon Cycling Carbon fixation Calvin cycle Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 5598.6651 8140.8695 2629.9699 6387.3175 5088.0327 2562.148 84691528 arsc Metal Homeostasis Arsenic Detoxification Parvularcula bermudensis HTCC2503 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Parvularculales;family:Parvularculaceae;genus:Parvularcula;species:Parvularcula bermudensis; 5824.9888 4342.4196 4065.0117 6335.5205 3650.6426 7916.7197 2215.9959 71212.2236 4187.4082 3374.388 4903.2201 3003.8587 3003.8587 6357.6234 4370.7201 5720.1736 4062.1458 9525.0046 2748.2922 5358.5627 6496.6416 3722.6068 3712.5376 10279674 dsra Sulfur sulfite reduction NA Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5765.6017 1965.3575 5380.7835 3055.615 4203.6461 2174.5771 11188.6951 2145.9652 302388961 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 4767.414 2955.3345 2182.1567 3412.4383 6495.0264 2292.2006 7215.2215 1844.3201 6698.1492 2074.5184 4695.9916 119503486 pgk Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 129605.1229 220744.7293 4193.5003 28833.0067 18486.9074 393724662 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. PAMC 26605 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5372.6939 5018.0546 3846.7337 300310262 oxdb Organic Remediation Aromatics Nitoaromatics Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 8353.2872 14582.7595 4768.0186 3423.7101 3310.0323 4014.2089 60644.1424 5300.4038 3890.4801 6329.096 3431.1964 3431.1964 2488.1281 6085.4202 2078.438 2633.3353 9151.5438 2216.6052 16725.7188 5757.7721 7446.1393 3845.5863 3761.2167 2309.5056 117188441 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 9915.7872 51475136 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halobiforma lacisalsi superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma; 4749.9309 4479.9668 2679.095 8542.2481 3497.9951 7806.045 3599.3841 3599.3841 3927.7943 9419.4537 6110.138 199952.9188 4697.1854 5102.7662 2443.5347 2986.628 8394.9994 3655.8269 19367.5832 490448.7009 7005.5601 5471.5254 3443.4714 2838.6765 7346.7248 213157180 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter baumannii AB0057 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 36226.237 8943.3666 5445.3033 8426.2899 5240.3419 355396606 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermovirga lienii DSM 17291 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermovirga;species:Thermovirga lienii; 4556.5223 10824.534 2701.5369 5284.6707 3581.4645 4805.407 4054.9773 68762.079 7492.5637 4895.8658 2257.4782 2257.4782 3452.7531 7098.6474 7091.9462 50828.6026 5018.9963 2692.1998 9094.7435 3368.8108 12820.8402 8081.1536 9912.6939 3749.3314 5273.4382 4994.9398 2842.3777 6511.3178 215455339 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7042.5091 77546552 nirb Nitrogen Assimilatory N reduction NA Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 47114.8445 10792.5052 15280.5013 3661.0881 8767.866 60093.316 9426.1656 11401.5516 11401.5516 239369.5448 4404.4934 5194.6131 6123.5908 3747.862 7462.7599 76287.242 5355.8772 8340.799 3154.2711 7340.2657 8213.4352 365837935 alginase Carbon Cycling Carbon degradation Alginate Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 6350.9051 357388889 chitinase Carbon Cycling Carbon degradation Chitin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 6439.8026 2127.2361 15789980 dmsa Organic Remediation Others NA Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7246.0501 5337.3296 10776.4595 5315.6211 2951.796 110069.6867 3823.1784 5247.8773 10149.3176 4755.9889 4755.9889 3414.4155 5079.2936 6439.968 3412.1107 4046.7507 2374.8642 4237.6719 221156822 bphd Organic Remediation Aromatics Polycyclic aromatics Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 4476.8457 2393.9818 3578.3569 3483.4322 6534.1254 42618.9346 2519.2576 3165.0303 6021.6217 26238.9074 14190.6303 7941.0589 5961.4712 3964.0012 7154.3043 222808.5538 152996229 arylest Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 4517.1213 4633080 msmabcd Organic Remediation Others NA Methylosulfonomonas methylovora superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;genus:Methylosulfonomonas; 6187.397 4910.3652 4656.4307 21681.7799 4656.3283 395775137 badh Organic Remediation Aromatics Other aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 4832.2099 13512.2063 21985.5246 5961.2754 7750.8526 13825.9949 5787.9083 3019.2053 3019.2053 12759.6789 4566.8072 3616.4722 12949.5296 2521.104 8607.143 72532.9038 7448.9855 4476.3458 12532.5194 3645.674 5303.1605 7883.1218 55978082 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4707.903 5368.5818 358375597 tfda Organic Remediation Aromatics Chlorinated aromatics Aspergillus kawachii IFO 4308 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 25220.6239 4282.9268 4005.0542 4662.2418 1255445 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3978.6956 6519.3693 4214.3407 2884.0234 4313.6241 3894.7811 2932.4516 5201.0983 2689.4627 4628.8245 4344.9284 6236.0626 1686.9841 119373686 catb Organic Remediation Aromatics BTEX and related aromatics Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 5289.4634 8216.2958 3006.2749 3998.0734 7391.6594 4051.6599 126837.1494 6906.22 4855.5807 3981.6795 3981.6795 18969.5813 4981.9925 8119.0659 4286.1346 2989.9915 2909.6749 66158.7786 11664.3284 8436.095 12902.5675 2495.5554 4233.7448 7349.3566 3118.3485 344317996 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7365.9237 25341.8967 13912.4194 5150.1631 4674.5753 2750.9288 98374.9446 5328.334 7443.5741 8724.2631 5013.903 5013.903 14035.4774 6108.2701 6214.1309 13222.508 4013.7924 16489.5029 9286.2369 9603.9359 4612.0819 4857.7036 3215.4216 172061331 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia ambifaria MC40-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 6916.7641 9492.3026 5279.1121 4197.0615 4388.4251 5795.4695 2737.6813 2776.6411 323364746 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5963.0532 31316.5564 31316.5564 7882.1438 152972969 phn Organic Remediation Herbicides related compound NA Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 5926.0511 3718.2028 3689.8455 4901.067 6759.6224 2336.838 1959.3037 2436.2493 5450.3273 380694145 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 8246.3865 5049.4601 227069637 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 7817.0883 2777.2804 2777.2804 22608.9544 2122.7837 333476539 mer Metal Homeostasis Mercury Detoxification Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 5036.5019 2605.0845 97267.9487 6086.2129 8322.4445 2107.2194 2786.2137 3058.6541 2391.3061 189306829 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4479.2726 3011.3677 2925.6142 4559.2174 9955.0332 60258.2892 4169.9266 2515.3203 2515.3203 6347.6672 3973.0639 6588.721 2520.0113 12594.4368 2555.6291 4736.1071 6282.5511 6443.2381 6376.3498 4926.0913 2574.4399 332289076 ppx Phosphorus Polyphosphate degradation NA Gallibacterium anatis UMN179 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Gallibacterium;species:Gallibacterium anatis; 4161.8347 2752.9685 2634.6882 4206.507 3766.1258 5850.1069 2784.1756 6082.2023 7803.9816 1885.8014 5237.4055 5933.7182 14486653 B_lactamase_A Virulence Antibiotic resistance Degradation Citrobacter sedlakii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 5099.9963 5663.9567 329297815 xyla Carbon Cycling Carbon degradation Hemicellulose Plautia stali symbiont superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 6624.435 6083.779 9423.0873 7531.2543 2341.6758 3121.2725 1888.9564 10137.1071 242206613 Sir Sulfur sulfite reduction NA Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 6717.9001 83318864 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6465.2257 3905.6338 2144.6765 2144.6765 7879.1625 3648.4143 5586.9127 2713.5234 2332.539 126459395 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 4539.9116 2661.7067 2285.1489 6080.3142 2382.6761 3497.1964 5318.0395 37281.21 15767.9699 15767.9699 14378.3139 2635.8585 4083.9371 7802.6586 8374.0826 2083.2616 4075.4297 2922.759 2769.8288 4501.3963 254460048 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4640.9375 57016541 napa Nitrogen Dissimilatory N reduction NA Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 5724.3238 8366.0044 7064.1011 5721.5715 2789.8085 24469.8819 9545.6194 3821.5981 5803.8974 6063.7234 3697.8131 5740.7073 2496.2923 170657632 fcba Organic Remediation Aromatics Chlorinated aromatics Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 16389.9677 4630.7553 2864.8606 2903.797 31944.358 8952.956 9462.0542 5247.1447 5529.244 2164.5726 3409.2086 2463.125 37965.6473 343784642 narb Nitrogen Assimilatory N reduction NA Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 4664.9513 7865.2721 3667.9824 7482.8024 4089.0472 6184.8414 6785.8754 104589.6862 6931.2625 5832.2876 19793.7486 6166.3655 6166.3655 3494.2675 5698.4106 4700.0754 5417.1381 6322.9825 2979.7111 3685.7635 8283.3443 2814.5408 10363.6874 9822.3447 12229.2986 3676.4026 13063.2712 4631.1083 2798.619 12857.739 217036775 amyA Carbon Cycling Carbon degradation Starch Thermosipho africanus TCF52B superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho africanus; 5643.7383 238928081 mer Metal Homeostasis Mercury Detoxification Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 9279.0476 2683.1574 6252.6253 4987.5498 14090.6613 7652.2 2404.9564 14378.4717 93357964 nbac Organic Remediation Aromatics Nitoaromatics Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 5969.9891 5993.47 149659.9563 106114.4978 5795.1196 3388.8623 3388.8623 5789.1776 13594.3024 4671.7422 2115.0407 7132.9188 7276.306 2302.0057 6191.7738 2680.1369 2961.6104 149386228 lipase_fungi Carbon Cycling Carbon degradation Lipids Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 125838.8846 14209.1228 5672.6424 8578.9491 340247217 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 20741.5288 49768.8441 22920.3694 2348.009 5749.8627 3137.696 18029.4485 4140.797 112956.4512 8597.0761 8005.2747 17592.1627 7253.5514 7253.5514 4258.399 10829.0933 9424.9865 7655.0046 6737.8074 6219.8731 6458.0563 15400.6401 6053.5158 18667.8315 16897.6409 16090.6703 6574.8673 8983.1264 5492.093 3944.0598 4595.8001 357419146 rd Organic Remediation Chlorinated solvents NA Thermovirga lienii DSM 17291 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermovirga;species:Thermovirga lienii; 33690.0918 7506.5735 219995555 mer Metal Homeostasis Mercury Detoxification Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 5253.6036 319994955 amyA Carbon Cycling Carbon degradation Starch Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 8632.9777 18828.2149 12950.8008 5889.0883 3398.3179 160220.422 5433.7826 6429.5119 16961.351 8429.0484 8429.0484 11450.5472 2744.9062 8906.5751 9346.0262 5897.4842 8223.9184 2046.3751 2772.6603 2972.988 76260677 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 4503.4041 5547.7347 6897.8126 33441.4587 8836.4454 3547.4106 5595.5481 385791278 bphF1 Organic Remediation Aromatics Polycyclic aromatics Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 6307.7567 10667.6536 3148.378 3220.2233 3734.0826 4031.6934 65735.8591 5450.478 4657.6523 3555.9352 11885.8713 3564.7337 6706.4391 5069.0844 6160.5429 2215.1821 7747.6492 2410.0166 8928.9469 6793.5473 1957.9363 3608.4985 3962.5261 2727.0042 5414.9183 359775998 cmci Organic Remediation Aromatics Other aromatics Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 13879.8229 8495.9129 4468.3803 5364.9423 2539.1681 102681.5759 3000.7104 3000.7104 6115.901 109155.3488 6740.2468 2692.5845 2428.4928 5163.966 13619.3376 2445.6503 4642.7975 311141388 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4852.5322 3727.1156 33270.3526 238844106 tfth Organic Remediation Aromatics Chlorinated aromatics Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 6124.7354 256690898 amyA Carbon Cycling Carbon degradation Starch Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 3993.338 3969.1675 14236.134 219741376 FBPase Carbon Cycling Carbon fixation Calvin cycle Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 25056.8055 14386.9553 4141.6119 6611.9973 5687.3382 3864.5628 4672.1258 4868.6463 60204.1943 8295.7367 4301.6193 3195.2765 3195.2765 8947.6641 5419.9571 5365.5361 5691.4674 3020.874 6458.4278 3261.9042 12124.7862 7472.7596 14680.0589 2857.2552 5643.2421 3748.5745 163746029 nhh Organic Remediation Aromatics Nitoaromatics Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7148.716 21565.626 8331.1707 3300.2903 3214.2599 4814.8895 5142.5107 142456.4773 8329.1729 5130.27 4805.4681 9131.3951 9131.3951 2561.2342 5341.1034 4798.095 4771.7698 4831.5965 18611.0215 2747.015 14138.9111 11888.9603 9228.3715 3556.5308 4054.2359 3379.6547 3369.6838 383328921 chitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecium Aus0004 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 34691.5062 11605.5217 6684.5569 2705.1223 2668.5645 2861.3378 3625.3276 4207.1896 4795.6031 4795.6031 6634.8993 2740.0577 6393.0644 9778.041 4978.9664 6964.7287 1900.1233 3598.362 3773.4921 262402741 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6366.4294 317392171 rgh Carbon Cycling Carbon degradation Pectin Bacillus sp. BT1B_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4188.2966 14953.3335 3249.8429 16888.2651 3150.5469 2766.1335 79684.0645 3736.0582 2508.1335 2508.1335 5964.9598 8211.7205 6463.3185 4459.9217 2967.409 4423.8138 9126.9308 2461.2534 6604.4324 4432.0985 88794859 pula Carbon Cycling Carbon degradation Starch Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 9285.4603 56219.1346 12748.8722 6324.0488 2557.6681 3409.4444 6057.7791 2968.3575 169400.6013 8301.9398 7992.0429 14264.0758 8405.9254 8405.9254 3439.5163 5771.4383 6170.1852 42127.6547 4265.7672 22073.8381 4757.5286 15609.7026 15994.2582 12757.7614 4394.9638 6470.4594 7055.4129 1969.6686 302542380 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 9062.6329 9507.4874 34315.4442 104420.1985 4047.0127 2297.2537 62392.1367 4860.6782 4766.7988 2460.574 2460.574 5720.3831 4670.7663 53336.4348 8221.7498 3280.7265 17463.6362 4813.76 7183.9829 4668.2888 5439.6947 154251269 chnb Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 20665.6279 3049.5172 2398.9098 6314.2718 99357.7855 5472.3166 3372.4636 2535.7078 3630.0176 3882.2269 4445.7549 2121.1658 22385.9323 342354205 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cyclobacterium marinum DSM 745 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cyclobacterium;species:Cyclobacterium marinum; 30234.0301 2292.2502 2730.5102 3779.6314 3490.3779 6444.3542 3598.0234 4035.992 8115.4399 6185.0558 7445.2266 6098.2396 6308.0719 2258.5275 3476.2444 3216.4591 2878.2253 338812558 chitinase Carbon Cycling Carbon degradation Chitin Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 4186.3368 30405.323 118424379 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6572.6772 17947.3727 6891.6683 22542.8988 5066.934 3962.4562 7037.214 15733.1033 11470.7463 326693002 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Leuconostoc argentinum KCTC 3773 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 4644.377 3184.9219 6349.8072 5182.8961 6383.4113 6114.615 339734657 xylanase Carbon Cycling Carbon degradation Hemicellulose Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 4713.2864 6181.6767 4594.2354 10721.837 3540.5308 3540.5308 4118.9562 7710.7774 5532.112 4167.139 2816.5852 12595.9647 5927.8503 6268.7237 2866.406 4244.1362 5288.9665 2635.8492 6752.4822 217336384 amyA Carbon Cycling Carbon degradation Starch Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 5841.3888 6388.8505 373100137 tfda Organic Remediation Aromatics Chlorinated aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 10783.1905 19422.2828 5770.7819 3433.5705 62027.277 2942.2358 2942.2358 7768.0953 5457.6906 5805.8953 2348.5238 3887.6465 3446.0529 2840.7929 302835720 actin_Viridiplantae Other Phylogenetic NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 23634.9802 18735.24145 11496.4227 22949.7632 7746.2375 18025.27145 17061.5804 637776.96705 26872.1297 17821.6534 34062.66955 24049.99785 26639.8839 30361.09205 26481.95615 12315.80075 29215.531 26098.4205 34533.04015 14852.0741 18895.7335 18836.77465 32528.87145 302405417 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 80608.0732 7217.1969 2447.9058 4921.9573 2877.1419 8810.8169 4071.3729 2866.1635 7446.7514 8213.0821 6878.2456 10765.6192 3598.5188 71905239 nifh Nitrogen Nitrogen fixation NA Oscillochloris trichoides superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris; 4480.5149 4111.8135 2412.7222 4522.4584 7115.8819 2773.1893 124489.1796 4598.4095 3695.4356 5122.7437 5122.7437 7721.4075 7420.3436 6078.249 2531.2081 23377.1265 3192.3488 20183.5382 5595.5178 7231.5319 2424.1069 3821.299 3439.8294 4407.8062 6715.5484 83723754 catechol Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4631.3266 260426115 nirb Nitrogen Assimilatory N reduction NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 17835.9559 8654.4559 4331.0729 4267.047 5416.1212 3862.2119 4788.4405 676874.5379 13780.7777 15995.9251 8103.6378 7657.6437 7657.6437 3490.4127 17859.9346 5232.2675 9764.623 4586.809 19566.1129 10166.0223 27139.733 27662.2233 8061.833 22104.544 6636.8089 25484.3016 4869.8921 10255.6533 262351803 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4127.4471 2023.6484 3217.0516 19926.2063 5355.5398 4495.1582 221534996 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4505.9374 356253.6635 32958.7378 47304.5901 7516.057 85216.6968 62487.2263 117620.5834 10606.6237 15455.8374 27638.8632 4022.6446 4022.6446 3780.8703 17798.7293 20672.6376 12496.6235 13299.2677 9046.2501 5491.1658 4570.3631 6973.697 12055.9237 23934.0743 15688.2623 11628.5013 4111.3847 12840.1101 7498.0051 5622.0264 7497.6157 160702501 tfda Organic Remediation Aromatics Chlorinated aromatics Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 5134.9915 4051.5292 3141.8855 3077.9728 4354.916 119260.3765 3884.5718 3834.1255 4353.1233 4969.2286 5003.9574 2911.6954 7117.8645 2162.2388 12624.1844 6385.6656 5618.5019 2395.1917 4661.7899 2089.2935 5278.6945 242310775 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter pullorum MIT 98-5489 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum; 5144.8163 22595.3433 5204.5751 3375.4714 3610.0504 92147.8601 4921.6919 4799.3803 3311.7732 3311.7732 18802.5377 10563.6628 2213.3111 4635.8435 12411.5496 2322.8104 17491.3326 8538.8456 8461.9198 3719.2433 3125.9603 322415428 terc Metal Homeostasis Tellurium Detoxification Succinatimonas hippei YIT 12066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae;genus:Succinatimonas;species:Succinatimonas hippei; 10143.6528 10154.7597 2999.4018 284447553 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 5845.4653 10585.3468 26883.8406 5802.4112 50030.8142 169793622 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4089.2602 5504.828 3573.2524 43583.5317 8498.8515 2767.0321 5147.5713 2136.8002 5710.3744 3354.1765 4872.1296 39972751 RgaE Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4101.0032 9528.5927 2936.5696 2638.8993 2730.7727 3341.3527 3997.4831 4417.0944 85362.9255 4135.7068 6687.493 6110.7141 5978.5605 4415.9889 3980.3303 4668.8895 4024.1583 2218.3411 2829.0437 2807.6015 7772.4625 4718.6986 6094.3637 2088.3647 3623.7163 2600.654 183998.7565 344690010 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5557.7512 3747.2022 4011.8896 4964.1466 67373.5632 5765.6858 6890.5491 2620.2485 7060.2796 5722.275 3651.9117 4374.6967 7110.2802 3463.612 6065.3174 2318.3699 9245.5912 5034.5039 5067.9966 2899.928 3009.6926 3576.3491 2205.3133 5683.6329 397168648 B_lactamase_A Virulence Antibiotic resistance Degradation Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 4841.353 6336.7756 3320.0031 76871.0689 5672.7124 6821.8566 6821.8566 4192.1203 8950.5801 6861.9947 3782.6895 6641.5522 5818.0055 2583.022 2796.004 6373.4878 2540.9022 11731.2689 5419.6736 2960.1289 2998.3489 5410.4345 2572.8985 7199.2864 295629837 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber; 5603.7239 3302.4827 260433862 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 3693.6605 14129.1413 2189.332 3582.5857 71059.049 3442.6174 3730.7093 2365.4824 2365.4824 3434.3239 5237.4032 4206.1986 2973.5873 347605575 ppx Phosphorus Polyphosphate degradation NA Candidatus Regiella insecticola R5.15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Regiella;species:Candidatus Regiella insecticola; 4046.1485 2987.3131 59001.3032 4384.1404 6632.4629 7294.5605 336308363 amyA Carbon Cycling Carbon degradation Starch Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 3661.1121 10217.2018 3358.9878 2245.4672 3717.5028 3918.7535 83305.9748 5796.1515 4206.4582 2624.097 6476.3174 5484.753 6187.0292 4898.9252 2749.4045 2289.5823 6888.2809 2124.1178 9099.5557 5598.4783 6367.8926 2922.7109 3414.4329 4427.209 2855.4055 8198.1439 260945219 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 4989.5678 15656.3737 6365.0153 74422788 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8082.8211 29245.4973 7009.8955 25069.2826 36078.027 3772.9681 68026.4962 5229.6719 5422.1572 4480.5685 3440.4597 3440.4597 18523.2257 15125.3132 5051.8336 2768.7285 16690.0396 3063.4006 14773.1497 11452.8717 10781.7378 4370.4137 4701.1523 13645.9317 302693681 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4450.3739 75440.8053 2275.9876 109452488 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4572.5057 4582.8541 2409.1166 3085.2926 2638.7845 25704.0739 2885.2926 99757.8744 7291.3152 6933.5918 6933.5918 5527.2122 7758.4776 4724.5254 7295.0786 4808.6171 2329.0013 3584.7194 18311.2923 2811.7652 44780.7602 5398.3396 8527.3903 3985.9551 4306.4909 6436.1401 3797.5984 5308.341 317123617 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 7994.523 13193.1406 4459.2967 24763.6137 21683.4009 5634.0146 10748.219 3048.7323 7996.5796 85637.5878 327197104 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 11980.1807 19693.0712 7448.1145 3705.1811 6764.9628 3612.3744 5101.03 13942.278 16178.7645 152989181 catechol Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 57574.4771 25955.76745 10889.9853 13691.62015 22987.8504 23978.28545 12731.29225 13660.3145 15501.1736 9863.12585 9863.12585 13079.2581 17484.0043 28857.2017 12778.9007 24468.02935 12168.6286 51845.3271 22947.03725 9228.8306 16115.0735 28817.6865 17385474 narg Nitrogen Denitrification NA Paenibacillus sp. Lgg15.10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5303.1874 2441.1225 2690.7303 5659.0595 6617.3386 111845.4929 4103.271 4119.4878 4119.4878 10757.5757 3041.2837 2568.4184 5906.2545 4832.6441 19203.6705 11983.282 5630.7696 2842.6617 3781.4992 5544.3366 13618.9768 5776.7298 38232633 urec Nitrogen Ammonification NA Yersinia rohdei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 4447.6613 11058.688 8731.5829 4651.5239 4926.6212 6167.9398 2350.7495 68741.65 5978.4012 9650.0137 2963.3046 2963.3046 2828.9614 24520.7685 5844.5866 5582.8507 9356.2286 4010.0186 12851.5989 5477.5507 8496.7169 4278.502 3672.319 4661.6477 5517.0815 6848.9231 28974730 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4562.2761 8692.111 4855.2288 72152.2077 3482.5534 7940.5393 4266.1955 4266.1955 5298.5033 118424499 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5257.381 17046.2365 7903.7865 4345.2165 12316.1402 4651.8563 202434.2883 129829.2775 12018.6269 5340.208 13732.0413 4632.2504 4632.2504 9774.4629 6042.3734 5921.1919 5821.753 10475.9883 4828.7039 11412.9714 10316.3639 44467.8638 2989.3141 7517.2197 4842.2325 3711.5368 108799341 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 7353.8784 26278.7958 3210.8636 5210.4683 2293.3898 2293.3898 3929.6327 5261.874 3555.2324 315604618 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 12690.3703 40555.0958 10537.479 5310.4031 9396.5783 5664.0478 5946.0099 3439.6001 245014.3953 12692.9483 11268.6317 28491.9799 14143.3175 14143.3175 4013.5996 10620.2782 9933.8355 4138.9154 4996.115 2318.3076 7032.8009 18831.8613 6642.299 16556.4083 10635.9222 13550.5205 5320.5181 6586.5492 7661.054 6045.0847 254254433 endochitinase Carbon Cycling Carbon degradation Chitin Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 11727.2774 16975.0546 51491.19175 51491.19175 45823.6667 165880025 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3992.3842 15802.146 7060.0305 4059.5944 2648.2881 86949.0627 6768.7615 6633.1557 3747.7217 3747.7217 7632.0476 5261.0018 5887.4552 4335.2681 6495.529 10987.1206 13823.5915 7767.702 6775.4245 4315.0682 5696.2363 238502463 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 4025.2438 4044.1681 8562.9628 2876.5666 4298.4189 3562.8382 2285.0455 76612.9972 3886.9611 10624.9641 2978.5778 7114.7426 5457.9769 10698.9412 4964.0332 4192.0814 2410.1671 2674.6169 8247.5779 2906.6092 10008.3815 6707.9538 7418.0233 3919.9907 3428.9944 4424.0434 4640.2805 7003.3596 260432857 phn Organic Remediation Herbicides related compound NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 6561.9543 8606.1939 3568.1866 2216.481 3132.9393 4985.5633 158879.7367 4319.4572 2279.0294 2279.0294 9388.0658 5579.8308 8128.5771 2959.3017 6509.4404 3085.156 10559.1538 7779.7226 8787.3612 3538.3878 3258.6152 3429.6809 4117.6139 22086.0047 133754577 phenol_oxidase Carbon Cycling Carbon degradation Lignin Russula exalbicans superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Russula; 15022.7947 118465446 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 13601.0203 75841.7399 4371.8684 372270736 aln Organic Remediation Others NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 12597.7622 2234.8689 77378785 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5726.581 48020.5104 16321.5008 5049.1814 13872.4714 3395.5457 4189.5402 3812.9737 104868.7621 3975.3352 7461.5695 11673.704 9670.2595 9670.2595 5083.7065 41763.6187 2456.3246 4555.4924 12700.8957 2714.2546 12469.4941 6508.0195 8106.1263 3447.3542 4169.007 5192.6827 3657.4406 310640769 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 13620.2357 16584.9339 2322.0358 2173.2288 3345.4272 11415.008 6095.1191 4369.4548 15554.6258 5160.3685 3975.1571 5624.4544 9248.8658 2371.4112 4164.2108 2419.999 1823.5479 2838.2311 3767.5695 2373.147 5221.8835 169793362 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4816.2015 7518.9 37136.6677 6912.7017 4179.0208 5170.0506 2492.3018 194274.9796 10957.186 10695.4485 9252.825 10065.4795 10065.4795 2816.2537 12583.4174 6892.0384 3876.5265 8242.3929 5982.0635 20392.5141 10557.4377 16772.8179 5195.3136 4493.943 7684.2471 2656.1479 291089364 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 5320.14 2937.0803 4575.1175 61703.0522 3674.0107 2057.1957 2057.1957 7771.3102 117343.4208 6799.6327 10101.4403 7100.7715 9522.2807 4972.9663 2130.9148 2099.0284 5462.0277 319915296 vgb Virulence Antibiotic resistance Degradation mine drainage metagenome 7743.2023 32770.5383 2303.3926 3203.0022 11113.8217 12618.8542 4142.0453 3011.4871 3011.4871 7393.8883 2434.7704 3194.9401 9103.3872 8012.802 2348.074 2802.7887 3952.6751 308747784 ppx Phosphorus Polyphosphate degradation NA Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 3721.9204 8943.2409 5522.4218 4772.1454 306488435 nirs Nitrogen Denitrification NA uncultured organism 50638.7893 2275.5257 15578.9094 2673.2521 386922430 nirb Nitrogen Assimilatory N reduction NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 4018.4512 167945384 ppx Phosphorus Polyphosphate degradation NA Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 15815.232 82209.3035 4471.8253 28089.641 6562.7819 3429.5634 15762.2862 4093.1856 3106.0597 80897.4267 5296.7986 6396.8981 4875.5723 3275.2849 3275.2849 3332.011 4450.3073 45348.2146 4213.151 4373.7726 13034.0521 10553.0074 20551.9261 10369.6652 8998.056 4121.7789 13847.3076 3871.1887 2923.7898 302413441 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 6692.7499 8347.5049 8294.8998 4229.6968 5649.1527 6066.8568 9260.812 3453.3183 3453.3183 6895.2021 6610.0014 4714.3734 5498.6633 6573.7525 2752.2232 9400.6373 5011.0002 7385.6129 3707.351 4719.3746 3016.2237 302684505 xylanase Carbon Cycling Carbon degradation Hemicellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 11070.0363 12052.3939 10631.6705 5893.0701 2846.4576 86736.4967 4235.246 4737.8183 3094.6534 3094.6534 4393.349 10333.6793 4735.0878 5959.0169 7014.6734 8558.2804 2817.2871 10516.8491 5656.9055 7500.7507 3664.0632 4987.2791 8295.3603 3531.1477 5423.6775 109702340 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 4246.63 13917.6371 2932.4223 11779.9506 4680.6704 7733.8418 5710.7217 5556.5359 4642.1246 6445.5362 4409.6682 11127.6459 5324.9363 5409.2231 1666.1231 4518.2932 3152.4209 6110.2276 84687409 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 6316.8069 3267.7809 4230.3449 30549.6495 30549.6495 8340.4661 3571.9436 4872.9249 4171.5352 6963.7837 6683.3633 3865.9714 5179.8832 1754.8201 2654.1149 5170.3184 84385664 chitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 11072.1767 386721003 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 7740.4758 8071.1543 19178.9091 5943.8878 9112.2425 6846.3089 5135.4261 2469.5176 201590.3459 6093.7149 11677.5543 27495.5678 13548.9905 13548.9905 2909.161 3679.1808 10285.6776 3567.1364 10424.001 3323.921 7418.5728 9511.0094 3683.4681 3307.9979 3396.5754 2036.6189 4727.2298 119669923 mmox Carbon Cycling Methane Methane oxidation Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 4996.1967 15845.6937 2691.9408 3101.1116 2922.5615 70312.7204 7006.3235 2733.7418 2733.7418 7156.6078 4213.6783 6543.8407 2190.8928 6048.7488 4441.8003 5317.6319 6792.562 2504.5725 3699.5498 6176.2731 332372416 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5701.1204 4572.2827 4051.6438 259508234 xylc Organic Remediation Aromatics BTEX and related aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 12846.5238 2093.2825 50505.0928 3943.7457 2502.6825 5668.6029 8258.5087 4961.3963 6535.6001 1813.6316 2330.6834 4064.2537 2299.2083 6404.692 261606776 Sir Sulfur sulfite reduction NA Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 9394.8417 8031.5349 2638.9104 289901.5206 4415.2951 2304.17595 2304.17595 6556.2716 9216.28375 4960.3402 5279.69625 12517.1758 3023.11575 3826.3514 186683036 PRK Carbon Cycling Carbon fixation Calvin cycle Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 5349.1972 2516.9241 3241.7523 3241.7523 5854.8893 4383.8924 24152.1865 2275.1635 1666.4978 2811.7069 2959.5422 37955578 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6902.3136 3182.37 4816.5017 9311.9335 5076.7299 12498.4844 10951.6325 4607.3443 89350403 arsc Metal Homeostasis Arsenic Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 8304.0558 16683.6655 303296065 PRI Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 5641.0994 3508.278 3142158 scnabc Organic Remediation Others NA Thiobacillus thioparus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 5159.2513 22162.8319 4729.6445 58631.0435 3453.713 5414.5972 4463.4387 4463.4387 3214.5632 4051.2907 24769.3083 8430.5713 4730.6194 5082.2358 2776.1391 169761482 cysJ Sulfur Reduction NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 400664.2598 9165.7626 9165.7626 2100.3379 222528471 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor bescii DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor bescii; 5576.3219 18593.4783 407647724 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 4475.923 59429.1475 2536.7222 6229.2361 4059.7208 4927.1012 7129.0302 4290.221 4025.7262 3641.5414 10012.9843 4753.8409 2988.6023 3859.2022 6016.7794 336428886 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 33504.5666 307218712 mer Metal Homeostasis Mercury Detoxification Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 10329.1241 4162.5333 2365.4399 6227.3127 4381.3508 2117.3545 2117.3545 7541.5035 3523.4669 3340.4676 4467.8213 2256.4851 3189.6128 6028.0069 358636275 dehh109 Organic Remediation Chlorinated solvents NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5694.4882 15634.8008 6586.6561 4412.3421 26692.2183 15919.8965 8242.4407 4249.5551 6671.4175 4106.6021 4106.6021 11055.63 7507.0296 2822.3662 12232.607 13482.0139 9769.2851 2930.9589 3901.2295 26986215 SoxB Sulfur Sulfur Oxidation NA alpha proteobacterium HY-103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7643.7467 13669.7254 10661.7322 2231.6645 6068.7633 3502.3638 14975.1453 6632.42755 2491.5403 2491.5403 5435.3642 6752.8575 4746.90955 6939.1689 11152.1699 4436.03775 9942.1206 4542.25445 9449.8259 8234.9818 6087.60605 3567.2949 4436.2857 3460.7263 2481.2991 38938.2344 109455439 ppk Phosphorus Polyphosphate synthesis NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7094.0103 313902167 terc Metal Homeostasis Tellurium Detoxification Thermaerobacter subterraneus DSM 13965 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter subterraneus; 4894.7689 12200.3674 6708.524 2378.3393 3181.3734 4764.5395 7356.7613 7657.0717 3467.6183 3467.6183 7178.7008 4936.5074 2333.6753 6313.6657 41237.9264 6133.151 8693.5815 2131.0424 3046.0831 29466084 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5424.0115 9654.6746 4393.7034 3459.3645 3565.6282 78984.3268 4304.345 4098.2829 5460.5557 10886.4258 6024.735 3785.6587 4392.5462 6464.7155 10469.8732 5210.3678 8648.4171 3769.8249 4950.0567 2835.3822 5620.8608 337761747 FBPase Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 5991.1934 4017.8977 4268.552 4343.711 5937.4124 6783.038 3480.3456 3480.3456 5087.8949 4112.3315 5983.8508 8829.5697 146304087 4hbcd Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 9163.5209 21240.1558 6794.0184 39030.8121 4139.026 2390.5487 156866664 amyA Carbon Cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 7657.497 4740.7963 4415.2641 4107.4623 15062.0122 3943.4698 135825.5335 5863.258 6324.4845 7562.254 3589.7808 3589.7808 3121.2198 12866.2981 9051.5478 3910.7213 6891.7381 4102.1849 9565.3024 8910.4569 25462.5228 14826.5739 6275.6574 10461.7432 4140.9013 6689.4904 5155.2394 7058.3464 146153399 nbac Organic Remediation Aromatics Nitoaromatics Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 4306.1797 10361.3904 2825.1255 2929.499 8141.7567 5085.0757 12250.8979 104944.8747 5070.933 3561.3887 2876.0303 2876.0303 13038.3825 4803.1651 5225.9963 45159.1086 7037.6619 5949.6385 3887.3812 5759.3955 3336.6202 10838.5303 4827.6043 5253.0239 4005.6263 5565.4214 4225.6122 2896.9818 359346195 vgb Virulence Antibiotic resistance Degradation Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6000.8276 2349.4237 4031.8196 2392.4285 2626.1676 2626.1676 7530.2167 4512.8842 3179.7515 68518304 arylest Organic Remediation Aromatics Other aromatics Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 387751.3929 6017.7584 9562.7463 5775.5368 4551.779 1592850.3907 5308.2077 6589.319 10327.8781 4435.9686 4435.9686 2873.7448 12433.3265 4545.1567 175499.7327 5876.3574 3473.3022 3324.2415 6929.2683 6882.5877 15518.4315 5195.9572 2189.8525 3788.0067 8013.3261 4807.8272 6309.0656 317398108 alkk Organic Remediation Others NA Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4854.1608 33320468 dsra Sulfur sulfite reduction NA Desulfovibrio halophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 3956.4288 20485.7466 17784.1677 4174.3416 4121.4976 8854.0027 2842.6963 3794.9288 245127.1794 4348.1727 6591.7444 19831.5163 3840.3536 3840.3536 24180.0863 4811.2065 6496.0984 7163.715 7681.2538 9859.1916 8709.5173 7232.8044 3809.361 5085 2824.359 29125970 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 4201.9166 387859149 amyA Carbon Cycling Carbon degradation Starch Mesotoga prima MesG1.Ag.4.2 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Mesotoga;species:Mesotoga prima; 6437.0919 6073.0193 4367.9935 3533.9486 57198.1855 4649.8711 2592.8458 2592.8458 11461.2202 4028.1713 4166.1437 19756.0504 2942.3117 9557.9642 9616.2576 1769.2611 223558031 ara Carbon Cycling Carbon degradation Hemicellulose uncultured bacterium URE4 superkingdom:Bacteria; 3947.6911 25526.4655 8901.9066 2882.9726 2451.0319 64574.4893 4802.741 8004.3392 4943.0814 5733.5156 5733.5156 2705.2137 8783.1778 6517.7029 5718.0924 2125.858 13508.1398 12198.954 9737.3938 9448.1232 6902.0292 4572.6194 4168.6514 20080.9499 3266.6548 163847112 cellobiase Carbon Cycling Carbon degradation Cellulose Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 7043.5779 4628.6435 2004.4773 4303.7144 8791.2593 74376.5079 3129.8193 3129.8193 7531.3149 9701.8103 5026.1784 307941642 chitinase Carbon Cycling Carbon degradation Chitin Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4269.7568 9305.4308 10122.7362 9779.3598 169387.7897 5976.1728 5545.3496 114734.454 5468.5804 8874.4458 15739.4462 5631.2361 5631.2361 3862.0471 7456.2835 49967.4375 257256.2021 23272.3618 346314.7435 4475.3993 8206.2715 305660.7633 8267.3978 7271.715 7612.3986 247219.0773 7725.6733 11082.1456 260778330 atzb Organic Remediation Herbicides related compound NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 24343.2747 128507.3091 14852.5524 5586.618 4508.392 5919.7431 2282.9026 121202.6585 7238.2078 5968.1458 8771.3043 4923.8917 4923.8917 4996.7674 10323.2409 8106.3196 6699.4229 5465.6632 18090.1079 2886.9876 16917.5491 13430.2668 14138.1599 4329.5935 5749.9683 4563.5182 333441084 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6222.0909 11825.7505 4121.1439 2439.1744 2439.1744 32790.4527 8442.6329 7891.4739 3242.5382 7860.8412 221724457 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 3873.6687 9526.5863 9524.1365 8070.7547 3659.0484 3089.0149 4791.6542 8018.1304 4226.2838 4724.8099 2314.4505 2962.7486 149812883 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4126.5823 7362.4173 5039.578 2558.9331 146344319 merb Metal Homeostasis Mercury Detoxification Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 91228.6367 48863.7325 3725.1204 7173.8524 3206.8309 383210500 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 86784.8713 31672.5635 5918.7801 3191.5981 108446.2089 5041.9715 9785.0588 5412.6316 5412.6316 4824.13 3921.9355 3227.08 2357.7745 8729.6018 8248.9715 1660.1783 377526975 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 117864.1846 2042.1108 21834.4851 11254.8893 3864.6837 300102225 rgh Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 24906.1393 3473.1885 19232.9899 270329.3377 4793.9405 2721.9515 2721.9515 472003.12595 20840.6418 18761.8225 11650.3481 58409.0452 9759.187 2654.0127 3667.0833 7007.1682 335424516 tktA Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 30762.519 2292.81 1985.8549 12881.8878 4255.2262 4255.2262 7110.6493 5110.001 4079.5953 19435.0581 3648.0654 3554.0254 12477.8464 10530.8035 6503.3769 3836.7537 2582.7689 3453.1607 2245.3653 323139571 vgb Virulence Antibiotic resistance Degradation Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 5680.3803 2463.0232 2847.8444 3324.7663 3554.7413 2880.5111 57405.513 14376.0921 95521.2385 11678.8447 11678.8447 5957.9301 5090.991 2257.1222 63715.0124 5809.7332 1960.4531 2941.7177 4420.6871 4730.3489 110821793 atzd Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 13423.2822 4193.085 2313.9241 80461.9822 10756.9062 4049.1151 2555.4824 2555.4824 2702.0059 20528.4022 4275.6643 2746.0562 5178.7845 2455.7865 8298.0371 1959.6258 413931247 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4325.3838 21999.3609 1843.6104 5306.1782 4163.7581 5913.4019 6247.464 4870.0448 3708.6854 2662.9453 5711.647 17143.0247 4065.9577 7486.2153 2479.1958 3549.8648 4103.1432 388545618 amyA Carbon Cycling Carbon degradation Starch Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7705.1409 30679.7064 33406.1323 225161054 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 4360.8605 21890.866 2043.021 6235.7761 5468.4047 328448475 xyla Carbon Cycling Carbon degradation Hemicellulose Treponema succinifaciens DSM 2489 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 5525.8129 5716.8747 4078.515 2233.9326 10716.195 3416.665 5501.8049 4661.5149 10490.9791 4829.5744 9419.1412 8488.5268 5827.6046 6172.2975 4643.7418 3867.5557 4150.0277 9364.9122 2593.2526 24224.5292 4110.4378 6901.3964 6856.8523 5210.3757 2948.9591 13156.4694 224539771 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 4810.8828 4024.2085 6204.4684 2861.6388 169295.5659 11789.1855 4740.5718 9466.0839 3550.7886 4352.446 8057.3995 3651.4051 10881.6362 291521621 amyA Carbon Cycling Carbon degradation Starch Coprococcus catus GD/7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus catus; 10278.236 5293.3145 10398.3887 5051.5656 3425.9298 116622006 amyA Carbon Cycling Carbon degradation Starch Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 7946.895 4966.9856 4348.4735 7842.9631 384102127 amyA Carbon Cycling Carbon degradation Starch Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 3811.1441 13576.5421 3531.7605 3531.7605 3697.4467 5661.3694 7588.4245 4286.9927 3568.0411 3387.0051 340347855 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 5052.1765 4253.7265 6641.6401 80575.378 3236.176 7404.7438 4988.1485 5052.2494 6826.3401 2612.0778 7788.9419 9979.1239 5606.5076 6224.9105 2894.0715 2365.8708 304403696 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 4292.0174 10241.0826 3245.5982 6304.7396 2892.0194 59585.0222 4728.3681 4992.9344 3250.9153 3250.9153 6277.7719 4346.4341 5950.7183 6894.9729 6432.3875 1978.0244 3762.7739 271501119 phn Organic Remediation Herbicides related compound NA Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4050.1345 2536.7532 5435.0683 3573.1599 104711.3231 51255.9145 4035.0366 3562.992 5936.6057 5936.6057 13176.169 4373.8965 3671.9784 4769.2575 3406.3224 7394.4069 5377.5057 5608.3421 1976.6025 2787.0681 8040.2271 5120.5797 262356778 endoglucanase Carbon Cycling Carbon degradation Cellulose Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4923.4396 14871.9227 4241.0334 7836.3347 4794.3274 6073.2863 3068.0484 782505.3732 4222.4066 4870.298 2464.3765 2464.3765 18221.3368 4473.5047 5847.6948 18054.2057 3496.0291 3438.2327 6062.3445 6238.9626 15931.5633 6894.5413 6682.9747 3236.0894 3736.3815 4701.6706 6446.5982 163793437 urec Nitrogen Ammonification NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 23383.2436 4115.067 77097.5571 3365.1518 3193.8776 4416.5016 5871.7169 9493.1525 5369.6003 1614.216 2349.3649 2256.9729 167647229 cysI Sulfur Other NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 5736.1389 43224.5295 3383.6777 83301.4037 6584.6694 5748.8534 2565.1464 2565.1464 8678.0348 11711.3142 5074.2521 4266.0322 2730.0492 6205.3588 8805.9864 7751.5375 6856.3114 1952.5793 3743.1529 5365.7621 328835348 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10489.9991 17731.9359 18106.6905 7318.4546 4312.9519 11670.7444 5172.3138 302760.6216 7205.5675 11395.8436 12633.9688 18074.9716 18074.9716 9456.6403 16017.8796 7086.4222 6303.0484 15210.1338 8341.237 57902.454 12848.3345 13229.2223 2663.8494 33232.6326 4886.7309 198276732 amyA Carbon Cycling Carbon degradation Starch Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 8996.42 2568.0963 4630.4791 5928.0531 1882.4855 15262.2806 87284694 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 74552.1704 20220.9898 18144.912 3849.292 4759.9567 13855.4502 82410.6517 6116.9244 5995.5967 5685.5324 5726.7183 5726.7183 3645.8897 18507.4495 6331.0809 21508.6256 7897.586 6403.0888 7584.5677 11686.6943 2532.6632 408794.1512 7956.6727 10857.1317 3488.7417 5715.9125 3844.8007 8945.2982 18313382 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 7097.6139 38882.0875 6207.19 5033.158 4044.4528 107405.2022 4320.6426 5268.8087 6829.9423 3945.8861 3945.8861 4055.8238 8516.5395 7943.8849 14691.9425 28957.3953 10018.8492 11314.046 3882.1461 3961.7601 259023257 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 6011.8639 6495.87 6277.5807 6277.5807 3029.0661 2662.6861 5919.646 3118.7296 3512.3175 6094.2796 1634.1172 2343.8998 206560132 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia J2315 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 15508.918 445911.4857 209401606 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10603.8055 16699.2167 2639.9181 3066.9936 3032.254 4613.0805 3127.9617 89016.8091 4081.2049 6222.2535 8113.7075 2826.2411 2826.2411 3450.4612 6392.9322 3933.4816 9347.7414 7807.9996 4062.877 4499.4541 8123.6529 3729.8519 12676.0513 4461.3091 6631.288 2136.8167 5482.2298 3264.4743 2348.016 4421.1231 115378683 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 306365.5504 4396.5072 334100950 xylj Organic Remediation Aromatics BTEX and related aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 13774.7528 4055.3593 11766.518 4225.4008 3064.2617 23414.2375 3663.6309 10590.8296 6603.679 5651.8911 2473.1511 328923070 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4915.1347 16132.5557 3590.1123 4107.9301 63686.3817 3998.5237 3812.5191 3299.9989 9173.6581 4858.3131 7492.8311 2835.8393 9340.3962 2597.0803 9386.4223 5340.0086 7439.5152 4307.3551 3725.9285 3267.8181 11705.4596 283951396 alkb Organic Remediation Other Hydrocarbons NA Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 13655.9078 7068.3961 2094.6872 7315.8923 16291.4723 3285.3084 3285.3084 15711.0158 2590.8722 345298413 pme Carbon Cycling Carbon degradation Pectin Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 26899.3068 3799.4946 3799.4946 2676.0802 18037.7216 2553.0187 4921.3187 2183.6896 11012.0399 261198655 chnb Organic Remediation Other Hydrocarbons NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 46392.7889 34729.7966 8777.24005 35959.2629 36454.7741 22681.7405 60298.21695 23864.9082 35812.73855 69802.264 22055.11665 36663.3823 20571.1686 238908450 alginase Carbon Cycling Carbon degradation Alginate Agarivorans sp. JAM-A1m superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Agarivorans; 6316.047 340356712 urec Nitrogen Ammonification NA Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 5884.0146 4486.4706 6487.4371 3258.1588 5420.0697 2719.0383 91774557 soxY Sulfur Sulfur Oxidation NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 7759.4819 44722.0248 296845847 xylanase Carbon Cycling Carbon degradation Hemicellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 6086.915 3189.7841 2300.8199 86716.397 2710.7951 8091.873 5676.3488 6322.7341 7105.8957 3916.779 2929.4045 5903.5481 2414.8959 8781.0954 7742.8757 8938.4719 2308.0584 3757.587 5407.3098 2497.7956 7715.1367 4097317 rubisco Carbon Cycling Carbon fixation Calvin cycle Hydrogenophaga pseudoflava superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 5044.5679 2204.9756 2096.676 2814.8224 2814.8224 7700.8217 4367.2667 39433.4312 5004.2478 8938.5716 5371.004 2497.0922 3033.6422 3047.5785 270210908 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17779.6861 8165.9763 29466002 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7570.3166 2770.3136 2831.1091 5862.4703 3142.4155 6413.0142 4300.6576 4954.6199 5905.615 9156.8662 4269.154 2601.0182 2981.9893 5035.3234 378950951 napa Nitrogen Dissimilatory N reduction NA Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8133.0415 16689.5215 5089.5923 2047.543 3205.4927 4704.0891 3879.7325 4414.481 57437.9025 5372.6834 4802.2658 62331.7418 3102.0808 3102.0808 6443.3792 6757.701 4388.8092 27874.1438 7001.3393 2238.3409 4224.9905 8911.5119 3227.3452 7993.9877 6640.9286 2395.7296 5434.5301 3580.5501 1992.6631 4310.5263 334103294 pme Carbon Cycling Carbon degradation Pectin Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 4585.0269 18289.7286 2341.8193 7080.775 3178.2852 3968.6801 164266.9831 5817.008 4410.1428 5889.1642 3837.5792 3837.5792 9776.719 3615.1579 3674.1761 8058.5138 5957.1716 7774.5448 4813.3029 6718.3994 1848.2936 3507.9468 4358.582 2490.7488 116634749 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4191.1655 2407.7858 4639.1264 2944.7912 39997.7558 39997.7558 7853.3764 6701.3921 5291.4825 2918.0567 5696.2723 12463.0928 5845.2628 5397.259 2957.0731 2476.9373 374370083 arsc Metal Homeostasis Arsenic Detoxification Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 3890.2179 8659.5278 154606.6043 6935.2624 3631.9366 3631.9366 4844.1445 15177.8686 238578325 badh Organic Remediation Aromatics Other aromatics Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4186.3869 4556.8141 3346.2822 2221.6074 18088.8932 3333.0464 2607.7023 3230.6896 6209.1619 260219049 amyA Carbon Cycling Carbon degradation Starch Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 127335.6935 306529969 cellobiase Carbon Cycling Carbon degradation Cellulose Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6573.5544 9331.203 62537.6289 3484.1067 6879.6891 4030.4444 7302.8151 5406.2129 7190.9988 1943.4656 3688.6644 2599.4799 387854610 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 4872.4537 2969.2665 4213.1273 66814.716 5922.3342 4472.4616 6589.199 6508.1442 6722.5987 4278.5185 5510.6214 2475.041 2854.4876 3989.5604 2406.8142 5928.8266 336300523 cysI Sulfur Other NA Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4467.3736 7525.6459 7111.2867 3637.1076 5608.4869 36353.8298 187721667 dsra Sulfur sulfite reduction NA Clostridium botulinum B str. Eklund 17B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 4412.7964 2421.9187 2370.3893 3753.2166 2179.8031 7387.8205 5745.8918 4852.0553 326950750 chnb Organic Remediation Other Hydrocarbons NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 9200.3605 8548.9087 9555.6373 4122.7379 6256.3568 6899.1597 8793.5375 4313.4294 2787.292 2787.292 4343.8398 13862.7506 7006.31 11739.7354 6346.3312 4021.857 9942.7804 8580.2873 12991.6542 295088.2967 8947.5514 2264.3916 4957.8251 6266.5028 2633.4127 6509.5242 228998779 ppx Phosphorus Polyphosphate degradation NA Bacillus mycoides Rock3-17 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 4419.049 60476018 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 6221.3205 2218.7115 3155.233 95225.6943 6197.2918 4504.344 1996.2441 1996.2441 36224.6432 3254.0586 4668.4518 4068.0959 2209.114 5220.0904 10345.4963 1776.7567 3827.9174 26984389 endochitinase Carbon Cycling Carbon degradation Chitin Aeromonas punctata superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 4145.3727 7899.4554 23394.219 2043.9473 19034.3997 63023.1049 5755.4395 5867.756 12738.6743 3646.4605 3646.4605 2974.6778 9444.7615 6230.4152 11571.9634 6834.7652 6157.4308 5181.85 9335.1547 2610.7296 27502.4671 7415.4207 2154.1907 18449.1467 46915642 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4835.2878 56075.2464 14273.7987 7957.6116 5565.4468 4403.9866 3175.4735 196954.6294 6502.4626 11239.6389 26968.1745 12817.6393 12817.6393 3893.7089 14394.8927 13921.3895 61209.7923 5170.5415 7609.3695 21974.4573 2455.0468 19456.3311 9230.3931 11840.8884 3727.2413 5660.9887 7120.7731 2469.0454 297150879 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 5585.9959 38240.9735 119840.9943 6286.6574 3871.343 57031.3733 5628.153 3097.7347 2875.18 2875.18 17737.987 6394.0125 4583.2216 4372.1108 10946.338 4568.3865 2100.4094 5506.0688 19874.312 10049.6034 5223.961 72257.4153 4755.1332 2733.5244 1849.0344 9598.0545 383764786 mer Metal Homeostasis Mercury Detoxification Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 4261.1376 8024.9768 5824.4869 6637.4062 3691.0156 4047.6775 1902.5011 1902.5011 5294.4246 4469.3912 6389.6828 3998.9724 5883.9814 2488.5558 3155.2928 359798229 arsc Metal Homeostasis Arsenic Detoxification Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 292037.5942 198284799 cysI Sulfur Other NA Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8190.0299 57210.1964 161241.0274 3810.9249 3761.9506 7712.7586 4346.3066 166272.9821 5210.3443 6958.5184 18172.0332 8896.2464 8896.2464 6025.4322 10595.7315 7590.9794 6080.2522 6512.1344 15582.8134 5277.2314 11940.9025 13693.0698 14036.6279 4891.6505 5030.944 2667.9947 219670902 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6172.9483 3157714 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 10648.7781 328754831 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL025PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5226.7817 92589.0094 6633.9074 17004.4671 484091.5118 4925.2325 387855191 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 6621.5806 13804.8009 140713933 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 5326.9749 314935492 Sir Sulfur sulfite reduction NA Staphylococcus hominis subsp. hominis C80 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 4401.352 308067031 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 6143.8377 19703.4708 3194.2355 57099.704 7652.7388 5669.5974 4714.4722 4959.4826 6743.4758 28499.4115 13010.4439 10778.2885 5125.6956 2298.736 2638.0771 9727.4748 2169.7529 7262.4667 317053993 fosa Virulence Antibiotic resistance Degradation Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4151.5997 4314.7969 3371.4268 6714.5162 7718.7673 2308.8349 4167.0553 2331053 ccmN Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4614.2499 5430.8514 2944.4467 4253.3992 59156.3319 5802.6209 5300.2291 6590.0822 2183.5948 6168.213 227290158 glucoamylase Carbon Cycling Carbon degradation Starch Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 13081.6969 9072.8114 3039.4999 8464.4354 3382.9774 4357.7337 8727.8731 79193.7441 8415.6726 2890.2978 2890.2978 3182.8013 8640.864 5671.7156 6865.5625 4797.4375 3729.3965 11170.9387 6085.356 11823.5203 2986.7163 3355.7252 10138.0065 4321.1041 294675539 terc Metal Homeostasis Tellurium Detoxification Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 6777.2502 36664.7242 78686675 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 7442.8671 21088.3733 310759682 catb Organic Remediation Aromatics BTEX and related aromatics Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 20879.6217 5300.1506 5688.2755 13465.8402 8086.5959 6317.5646 2751.0873 2751.0873 6366.9876 6132.4188 4030.478 193703.0145 3938.7848 8010.9956 3696.1323 5978.662 4133.3994 226226674 arsm Metal Homeostasis Arsenic Detoxification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 10312.3115 4198.7307 2933.357 11897.993 7085.217 2698.7261 7143.7726 3062.2119 11456.772 6203.1718 8641.8711 3061.0094 5064.8855 6256.2218 91786039 mdld Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 37214.57465 187691.40125 182615.29785 52284.4707 98034.2262 1049992.78945 120784.08485 135951.7306 89590.69375 198077.5846 198077.5846 132548.27015 126417.9604 124692.1973 80467.8507 148575.7395 177354.00135 162317.9639 73058.5031 121877.38525 78371.4632 70249.2777 103601.62325 56181.4615 94097.55705 357590671 pcpe Organic Remediation Herbicides related compound NA Corynebacterium nuruki S6-4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium nuruki; 4462.8791 24793.5706 4867.1212 4443.3884 13706.9721 10959.4347 35698.7107 907694.8202 13409.8233 18038.8143 12087.5651 9041.3203 9041.3203 14763.7484 3602.691 5265.8481 3178.7603 14656.7531 38322.6551 3632.8063 15497.1145 19059.5191 37906.9494 11023.4604 19939.1182 16539.0535 6441.3887 359821806 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5101.7455 6478.3191 3314.9223 2571.0574 10110.3131 3595.0564 4762.1642 4088.0009 4088.0009 81560.2059 9499.0218 3392.5452 5947.26 3405.2775 37904.3843 7330.0561 6809.7649 7231.1523 4845.9908 11447.6438 261367971 pula Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 57441.3618 86280.9227 37575.5928 1527434.9904 43153.95145 43153.95145 62170.1157 33140.17 91875.0564 169117839 mer Metal Homeostasis Mercury Detoxification uncultured organism 5125.1621 238715223 ppk Phosphorus Polyphosphate synthesis NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 10721.7083 4951.4143 2558.6739 3623.2954 4818.7427 73683.6831 4680.0375 4603.8205 5102.3937 5832.7119 3614.8147 4174.6556 4869.6014 6388.8199 3262.1604 3198.0325 4145.9111 2542.3161 6379.0913 326196899 cutinase Carbon Cycling Carbon degradation Cutin Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 5288.0819 2116.0888 179391.5301 7249.4262 5982.4047 2652.6723 2652.6723 5482.6418 3113.7876 6953.3043 7540.9213 3365.2205 4843.8728 2795.1292 2913.3658 3697.1096 386723586 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 10655.0309 24927.3366 5058.1931 6882.157 4361.5904 71527.7934 3383.7214 10711.2632 5885.1129 5885.1129 7916.9179 5119.448 6849.7477 1906.4013 11991221 ara Carbon Cycling Carbon degradation Hemicellulose Cochliobolus carbonum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 30095.8766 349795404 nifh Nitrogen Nitrogen fixation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 14154.0953 9499.3072 3700.156 4750.5428 321520.4987 154247889 arsc Metal Homeostasis Arsenic Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 10178.6252 15774.1987 313159422 gdh Nitrogen Ammonification NA Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 48483.801 3566.3774 19112.5046 5660.6704 71726084 amyA Carbon Cycling Carbon degradation Starch Janthinobacterium lividum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 4074.181 3966.6082 4115.2937 74658.5968 2663.9513 4762.8375 5147.4952 9663.0608 5982.741 4645.9739 2683.845 2842.3584 11631.2853 4390.1307 78189908 dsrB Sulfur sulfite reduction NA Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 4407.8589 4347.6669 119694546 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 9417.8285 20971.8275 79735.4598 4043.9842 2405.8902 2405.8902 4066.0282 2650.7707 3418.2069 10077.6292 3048.3465 359799725 terc Metal Homeostasis Tellurium Detoxification Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 5649.1095 14826.354 6018.0044 2829.192 66873.2806 3351.5276 2685.1256 2685.1256 9081.9845 3241.5314 3801.6331 2881.6275 8914.9331 2205.1377 9170.266 5149.0069 7188.0561 2633.5932 2754.9398 5137.904 5813.9348 302392430 dsra Sulfur sulfite reduction NA Acetohalobium arabaticum DSM 5501 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halobacteroidaceae;genus:Acetohalobium;species:Acetohalobium arabaticum; 8142.7237 9693.7789 4750.1681 3937.8175 4567.516 47640.0482 421953178 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4411.6754 24338.0658 2460.5026 3439.0149 6359.6025 5242.5739 17089.7973 29348.0402 7815.5549 6770.4255 3130.4197 6170.4159 262274185 phn Organic Remediation Herbicides related compound NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 28326.7266 14923.2642 3559.703 3814.4969 3024.5746 6609.4493 3451.6081 208288.5455 24343.675 4623.7535 2640.6251 2640.6251 5082.5877 10843.3693 8937.001 5403.0596 6348.5424 4087.783 4861.4401 15196.3942 6232.4468 14614.2042 9244.1802 10886.806 3173.6744 4414.9692 8931.3266 3672.2342 43143.1864 298236953 amyA Carbon Cycling Carbon degradation Starch Mobiluncus curtisii ATCC 43063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 8934.7934 9956.5296 219869854 dsra Sulfur sulfite reduction NA Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 7091.0313 2379.5494 2889.964 14216.5139 66487.2254 8543.7343 7092.6931 3801.9108 5615.3931 2262.9087 5703.5426 2568.3058 7335.4931 4297.7286 254506748 ppx Phosphorus Polyphosphate degradation NA Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6098.5033 4402.1207 5163.5998 5375.6257 15604.3888 3716.6094 8346.9356 4523.772 2597.7298 4605.645 51291735 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5846.9791 20647.5451 2076.4609 3479.3509 4050.4044 3679.9185 1039984.4947 6338.1242 3922.2641 4434.7925 3410.5076 3410.5076 6530.2574 4833.5187 8909.5126 12799.4275 2203.3355 3249.8756 4743.6211 242762966 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 26361.4928 66967791 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4214.847 4938.5796 2241.5325 2616.1981 54232.0581 20891.6502 20891.6502 6964.6132 3689.4191 7091.867 8242.7346 4435.4003 6123.4178 2251.0627 2652.8686 3261.4424 2233.5986 296181381 amyA Carbon Cycling Carbon degradation Starch Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 4149.6886 7702.6647 34855.0802 160884115 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7475.4948 2975.1022 4115.0613 3833.279 2826.7555 5784.7619 1756.6273 319784332 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 4130.5781 3383.9564 259907753 ppk Phosphorus Polyphosphate synthesis NA Erwinia pyrifoliae Ep1/96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia pyrifoliae; 5885.4725 36308.5937 7481.7761 8285.3832 36968.3473 4416.2951 39026.076 16891.8383 17431.8852 5568.4198 5568.4198 6377.0031 20738.6962 13447.2596 22806.4901 11392.2218 52060.4097 7823.9838 48890.0538 50408.4885 28489.6447 56501.9602 7267.6709 14325.891 2029.1764 77969921 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5725.693 354565391 PRI Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 6100.0371 2713.6299 4180.6899 6468.5696 2546.4407 3303.2666 2315.1514 300390412 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3645.774 2262.6281 5880.318 2503.6911 3635.2301 2234.0771 3928.3669 5660.6097 218132522 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacteroides] pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:[Bacteroides] pectinophilus; 6213.4526 282899150 amyA Carbon Cycling Carbon degradation Starch Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 64561.6668 19260.0394 15567.1468 4425.7772 2822.5048 3702.6786 19941.6768 226512.5622 5270.5496 5904.0627 11613.6843 14238.9111 14238.9111 8226.0656 5798.1861 5455.9162 9549.7162 2444.6556 9938.4813 8145.0603 8847.0994 4742.9067 5031.8994 5395.037 4720.5988 83651517 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia thailandensis E264 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 30981.0219 4325.1254 85317.2493 8064.9585 6826.7406 15587.9196 6113.0528 3399.185 398993598 arylest Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10801.1177 10631.9351 106000.9943 8122.7475 10127.9539 3560.9055 3560.9055 4725.007 6557.1599 64224.2743 265996.8833 10625.417 4749.9072 4177.7057 340777365 urec Nitrogen Ammonification NA Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 5143.5259 2514.8483 3336.3387 2524.8733 2524.8733 5970.2261 9153.4958 2371.6861 11035.6932 5162.9115 2125.1362 387969037 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 34971.635 9175.1398 113237.1633 3714.2229 226388.1441 4060.866 3085.6532 3085.6532 7707.6083 3814.8613 8351.1995 10994.426 2560.9248 3068.2187 10681.3591 9853.6276 5336.6919 2642.3767 2884.5997 3179.3418 2262.4123 119863435 arsc Metal Homeostasis Arsenic Detoxification Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 5343.8703 340518748 dehh109 Organic Remediation Chlorinated solvents NA Trichoderma reesei QM6a superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 8165.635 11016.9761 5697.0471 12707.1065 7123.3912 11355.0487 16857.8004 8459.0848 698772.0296 3579.7189 3818.0215 8942.8367 12907.5257 12907.5257 5515.3506 78017.9706 5443.7352 8591.5534 5998.6203 4363.1795 2929.6085 5582.176 9685.4571 3736.0195 196917.7136 5916.752 14449.4312 3014.2552 8199.4162 9447.2398 4106.0213 8556.3696 224522058 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 14806.5041 2706.9562 5284.9328 4319.3134 376002065 nira Nitrogen Assimilatory N reduction NA Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 4344.1062 7559.9969 86158.9136 3180.3752 2607.6114 2607.6114 2310.9359 7014.4514 4174.3341 5787.3345 2174.4572 2553.8667 3651.0076 160917508 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4133.864 89880.6527 145047260 FBPase Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 6700.9126 6378.2759 4768.8599 332883350 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Dysgonomonas mossii DSM 22836 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas mossii; 274794.792 4709.4609 374710914 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sporolactobacillus inulinus CASD superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 23029.5294 71909208 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 4616.9795 9931.6944 3308.7806 2755.2503 4224.0288 5341.1062 3321.0224 78444.1591 7769.3884 4606.2451 151708.5372 151708.5372 6053.9842 5365.8809 6273.0331 5773.7183 6012.8509 2203.0774 10312.246 3554.3326 5787.4017 2865.2122 2840.6938 4336.7424 4117.6531 229321908 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 4081.9863 5645.4794 11862.1675 3502.2989 3036.7215 3480.3024 3480.3024 4561.6025 7125.9548 3683.3102 4242.2108 17920.0098 3994.0814 13739.2799 2956.4835 7474.4364 8651.8195 3785.3922 4256.6825 313895446 cda Carbon Cycling Carbon degradation Starch Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 4681.8251 2444.9757 5635.9475 5464.4428 5464.4428 2843.8035 6334.306 4169.9781 5529.9193 5852.6653 9429.3004 7843.5896 5863.7986 2229.6419 2850.598 2350.1247 157083036 dmsa Organic Remediation Others NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 4171.5991 4645.6695 82708.1475 5878.2663 2832.3208 19907.4425 5716.8548 7074.4764 358639061 nifh Nitrogen Nitrogen fixation NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 12654.0445 9492.6274 3627.3412 2694.3267 3074.32 2449.1307 74083.5855 3646.2862 16414.2207 3955.1017 6304.8763 5210.6295 13483.2576 6248.9305 9921.4313 7662.8105 3560.8941 10944.1884 4769.4607 6259.5645 2888.6521 2933.5222 4221.4892 3754.5502 4984.7465 319993261 alginase Carbon Cycling Carbon degradation Alginate Microbulbifer sp. 6532A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 11321.8678 12214.0794 3125.491 3169.8781 3779.4333 2774.9804 5205.8284 5332.8433 2449.9366 2449.9366 3753.0668 4830.8678 3668.4255 7010.2376 4905.9822 8216.6528 11182.8026 7545.6822 5997.3803 2979.9998 5336.097 2755.0233 222149675 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6719.8279 8858.4515 3924.5554 2874.9613 6147.5302 3081.1741 5047.0801 2824.5716 60543.46 4743.8558 2118.5212 2118.5212 7897.0181 6536.7492 6635.2725 7419.6531 11374.3777 3512.4227 3073.5201 7868.5675 15975.5304 10487.9108 67262.1531 1960.414 10882.6513 4618.8541 3408.095 7918.3516 325840487 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Turicibacter sp. HGF1 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter; 4072.3965 2194.5303 2415.2457 4045.8768 3858.4812 3478.2715 2249.4058 2249.4058 3165.0362 8201.2517 4741.0161 4699.4366 4672.7303 3267.0776 6791.2676 3697.1646 3368.7342 6318.2571 2270.6081 3650.8626 3452.4514 2044.2452 4240.8817 344198423 tktA Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 34077.5833 236215.5838 33863470 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 5484.4717 167735421 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 6296.4346 247542179 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7504.0697 3116.9496 3665.665 2208.8737 7707.8102 124345.8098 4931.6547 4143.9613 5819.8711 2896.8385 2896.8385 12793.9418 6246.3626 4787.8127 7486.5916 4806.8884 2960.0714 3073.7436 13070.5568 2288.412 10329.8422 2957.7447 3451.8345 6891.9927 2537.4419 8272.104 365784263 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 7541.2423 2985.1706 7132.7373 9988.052 4953.3795 7612.9133 4008.0866 6221.0606 83954173 FBPase Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 4477.0427 4128.3301 2159.1919 4929.5965 4782.4835 2616.6062 100345.061 4545.6731 3409.4668 3409.4668 3937.3909 8467.0222 5591.236 4106.114 7765.0256 8156.3102 2447.4126 3420.7545 9099.2397 12438.9532 7342.9646 8147.9932 2838.5592 4729.9482 4032.3931 2472.2634 6437.1551 15615320 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 8705.8762 3792.1618 4311.6113 2738.2742 4195.9937 2847.6594 8120.1999 4064.3705 9154.9393 5949.3314 9760.2368 4945.7991 6436.8914 2286.1356 3131.6238 3564.6534 2547.5472 8158.8836 305379315 gdh Nitrogen Ammonification NA Vibrio alginolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7068.0915 145305377 xylg Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7440.2668 9252.4909 4227.163 3150.4238 92526.0443 4162.7201 2777.4562 2777.4562 3997.312 8734.3706 5114.4887 4486.1705 6058.6566 7992.1199 2872.3244 12841.7902 12312.6088 4731.0563 9708.4449 2560.8329 3352.6306 4234.1574 3365.9041 88696577 endochitinase Carbon Cycling Carbon degradation Chitin Bionectria ochroleuca superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Bionectria; 4890.0218 4658.6808 40061.6983 3647.3385 3245.7533 5108.6459 2782.2508 2782.2508 2949.6196 5841.6544 4285.0984 14720.778 5163.5697 3497.6526 3423.2939 8083.7154 2304.5185 8943.8021 6230.9339 8328.7776 2763.9725 3735.5515 2887.2777 2579.9639 269793172 ppx Phosphorus Polyphosphate degradation NA Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 303356.8158 4734.8252 5983.4052 6292.0419 6292.0419 6002.0099 8617.9176 3374.9596 6594.1902 2259.8103 1946.1965 9183.1817 7182.7306 3736.0019 268317541 vgb Virulence Antibiotic resistance Degradation Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 12027.4704 3461.7262 4266.1114 85160.7275 5317.9869 6789.3551 11136.2587 12959.3604 4631.4175 6031.7335 4199.5757 5069.8838 7475.0545 4531.2144 5256.5209 2268.39 3349.9946 5848.7221 5960.6828 288352045 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38150.2739 8202.5474 3393.0532 2915.0077 29160303 exoglucanase Carbon Cycling Carbon degradation Cellulose Acremonium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Acremonium; 4738.3584 3900.5022 315178646 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8599.5094 90253.4915 24959.442 10692.3932 12013.8306 9430.4203 8918.6983 7483.6569 525878.1687 14948.0026 16912.2918 42289.2254 20389.4441 20389.4441 10112.5996 16220.597 14311.6358 10056.4602 10243.4775 42639.4833 4584.5201 25845.6643 26034.5417 26550.7615 22774.1026 9911.9501 8044.4089 2784.7538 237879427 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia glumae BGR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia glumae; 7269.4377 2167.872 2918.1745 39580.2774 4314.4936 13728.6692 56906.3726 108120.6296 10530.8131 10530.8131 12180.3207 44939.4649 7060.405 4655.7455 9326.292 4305.126 5422.4996 2574.9404 2415.8045 7090.7286 2179.81 33284995 chna Organic Remediation Other Hydrocarbons NA Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4144.5423 19528.7238 8074.2774 2186.6733 2744.1569 69834.8531 3656.3427 3899.6941 10495.8417 5153.0425 5153.0425 3719.6267 15581.5898 2272.5418 7509.7275 3538.8025 5197.0044 1873.107 2636.2273 392965440 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 24832.3423 6087.1105 5159.3524 5159.3524 221533465 fosx Virulence Antibiotic resistance Degradation Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4544.1058 2689.2568 8156.0465 5445.0492 4393.734 5752.4145 5894.6583 312441880 ara Carbon Cycling Carbon degradation Hemicellulose Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 5407.9353 56312562 badk Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 21410.0583 15097.988 5857.7697 14772.5567 5415.0742 5389.5506 3931.5305 3460.1883 2772.2495 82833.8967 4302.8043 3903.0485 5032.3745 7655.996 7655.996 3058.9279 8823.3721 7246.6422 3254.1647 7653.3463 3333.8493 24332.7735 10195.1604 6290.7176 8936.4611 5017.1102 2648.7245 4266.996 73541078 arylest Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 23985.1407 22269.1192 3801.4361 3059.2698 5145.3615 69132.8468 4990.0153 4986.8925 6092.5461 10001.3336 8875.2883 5657.5863 10842.9948 2919.1139 10076.3312 6162.7674 7084.5987 7464.2379 5299.1044 3819.3312 10231.4491 187477101 bphd Organic Remediation Aromatics Polycyclic aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 13602.4807 38707274 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. BZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6474.0685 5798.8505 3808.0102 6694.3162 4022.928 2259.4817 2562.5817 6689.7314 372005745 thl Organic Remediation Aromatics Aromatic carboxylic acid Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 5351.2716 4038.8123 4002.9662 3863.606 4811.2641 8377.8742 4151.5056 3824.4896 7827.8881 4393.8091 7166.0097 2770.1057 3398.701 3488.6185 2248.8141 5216.8601 299794685 badh Organic Remediation Aromatics Other aromatics Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 4318.0135 2249.2344 4245.8884 5737.1877 4498.4919 115682.8179 5336.211 4922.6898 4922.6898 4346.4242 6604.1546 14456.368 9764.8197 2788.6258 5079.4754 11088.8493 3272.3267 16297.126 8547.532 6417.498 5380.4507 5601.685 11293.6628 4470.3477 10257.8943 78188832 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 9437.839 227483221 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 4117.7247 1870.8069 2916.2587 4487.4108 4244.2096 626506.19 3396.0632 4638.5163 7921.8006 4765.2679 4765.2679 4703.6595 2453.1129 3222.7086 5482.8743 7823.5399 3058.4211 2428.4012 123965849 rubisco Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 5023.3411 119177882 glx Carbon Cycling Carbon degradation Lignin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 4619.2159 223995.021 3759.3631 7656.287 359836189 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 97432.9017 349796086 fccab Sulfur Sulfide Oxidation NA Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 4883.9242 34620.5686 5873.9585 2088.66 5819.5272 2896.4642 127912.4094 6073.4616 6280.3416 11803.7407 6681.198 6681.198 2847.8951 6540.4428 6910.0093 5167.5472 7469.3926 2422.3781 3815.8901 14521.5553 3393.8006 12415.4403 8189.0611 12464.1997 4155.518 4974.9547 5051.2654 2392.1528 5125.2775 148474736 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7541.9331 330835551 C_CoA_hydratase Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera cuprina Ar-4 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera cuprina; 6203.5565 4719.566 6806.122 3022.694 3022.694 3631.6645 261340993 amyA Carbon Cycling Carbon degradation Starch Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5115.5319 7825.7105 5633.7492 8824.6155 5005.5971 2540.4772 83592226 terc Metal Homeostasis Tellurium Detoxification Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 6682.5268 1854.015 1854.015 4173.4117 8181.1019 2119.5036 384192349 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis CNCM I-2494 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 5484.4291 3638.8996 8307.1066 5096.3045 8652.4225 26195.5542 26195.5542 9082.8546 3304.0287 2569.9223 11712.7919 2783.8541 2104.1081 209500984 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7159.1221 29233.8404 17298.5229 3747.0327 3460.3323 7453.3977 3146.2725 90650.2377 6808.3979 8304.9662 8492.7724 3649.3178 3649.3178 9509.9769 11064.7047 7837.7908 8654.4143 2204.3554 3337.2104 10981.3937 3370.0891 17652.767 6679.0578 9019.3849 3654.8926 4851.807 3522.3279 3609.0577 4793.9816 147886032 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 1283950.8466 157404590 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5517.3345 7223.7561 4128.0578 4606.7964 2635.418 8594.3378 5872.9879 4337.0882 99227.9231 7421.3762 4387.4974 4387.4974 7927.4033 4462.0187 4127.8764 5610.851 4069.7525 14040.8974 6112.4478 10944.2996 3183.896 3288.5935 3185.7117 2374.2247 317131735 amyA Carbon Cycling Carbon degradation Starch Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 6542.0947 272429.9633 3323.2073 7732.4224 4772.9625 102848.6286 3970.8974 20749.7524 9519.6744 5251.2761 5081.7155 5731.2047 8383.4789 2122.1008 3605.8727 9328.5851 3768.9004 13638.51 7495.6393 18649.8679 3700.7731 4354.176 6353.3572 3189.8737 326196025 alkk Organic Remediation Others NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 8170.7728 3509.3825 3523.5426 5619.9743 3300.2942 2781.5594 4218.3364 6675.8318 3256.1592 330427379 cysI Sulfur Other NA Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 5903.0315 3641.8678 4081.5111 3588.6135 3694.7551 90094.7706 13756.6475 3246.7952 6677.6161 4854.2035 61578.0047 7904.9216 2209.2361 7606.2334 5046.0161 8219.2747 2275.6185 5940.3228 3329.288 2092.8635 4570.5207 320448345 gdh Nitrogen Ammonification NA Streptococcus equinus ATCC 9812 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 4619.0842 422314427 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4112.5733 5708.8872 2862.5548 3847.9947 3760.4336 4916.7594 5301.1225 2824.6841 4422.3226 89572582 mmox Carbon Cycling Methane Methane oxidation Methylomicrobium sp. NI superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 4832.9248 7972.9784 2979.4542 3485.8652 4677.5132 70750.8833 4114.5418 6616.088 2289.8668 2289.8668 6598.5629 4755.369 4409.3295 4484.9066 3314.5472 9217.666 5175.9829 6178.7409 3521.0321 5265.6771 2609.7154 5834.9609 37726829 dsrB Sulfur sulfite reduction NA uncultured prokaryote 3974.5997 146339481 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4174.3807 119504926 bphF1 Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5812.4624 20808.7759 7057.688 3108.0455 65922.5475 3536.7015 4014.1903 9217.8686 4876.3879 4876.3879 4591.9743 4287.5785 3007.7365 9791.4825 6362.1444 10417.9961 6613.3811 7386.602 2711.715 3165.2174 88815118 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 5877.7786 3376.9148 4856.8691 2653.8666 75261.5421 3803.213 4893.2008 2759.6648 2759.6648 3928.5973 5829.9412 8765.8683 5737.8658 8222.6 1915.5924 2604.2392 3838.0535 157804863 APS_AprB Sulfur adenylylsulfate reductase NA sulfur-oxidizing bacterium AII2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5477.9002 333985137 RgaE Carbon Cycling Carbon degradation Pectin Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 11993.1428 4234.4964 6153.095 4483.4771 27101.9201 2598.6441 11301.6591 8415.9693 3719.3697 45633.9941 5276.418 224712624 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 6374.558 7865.289 2833.1482 3464.8481 63459.9481 5300.6116 2712.0514 7756.8412 5660.7456 3993.1993 5867.8494 6929.4334 8628.8229 8150.5268 2478.9605 3024.6336 2332.3865 4603.1918 9796012 cellobiase Carbon Cycling Carbon degradation Cellulose Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 8882.5364 3253.0123 3903.4227 4930.1326 3988.9864 6306.4786 8912.0694 6530.8587 5642.2705 2054.8054 3224.2017 2487.3948 5380.4001 153962856 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 4965.6029 2775.5332 2841.1027 85832.8847 3379.4847 5453.0375 5269.5763 5969.9526 6498.9682 6666.7341 6155.1075 7357.3787 8611.1304 3649.2228 4014.9989 15846.9541 46110174 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 9761.0849 8953.7954 4024.8679 239818059 pgk Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4444.1857 3433.2117 18115.819 4003.4911 7455.9182 3311.0159 5236.5115 2437.6343 3229.5504 189203367 p450aro Organic Remediation Aromatics polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7224.179 4834.9399 15086.5392 3158.5119 4471.1397 6133.27 2822.9347 2822.9347 6880.7771 5976.8385 6402.0052 4017.4256 4660.4666 6389.3797 2339.8442 7092.3577 6199.9548 2249.6416 2783.9111 3172.6755 2346.5763 6073784 beta_agarase Carbon Cycling Carbon degradation Agar Aeromonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 80057.1214 2883.6836 4168.0415 5888.7362 4619.2423 4609.9329 7858.129 331422.2875 4209.0416 4263.4106 52663.8211 52663.8211 4091.4781 9353.4818 8613.0385 65347.9193 11587.6962 3136.9622 4350.9319 8505.8752 14952.6593 7817.1148 10990.5636 3153.9219 5656.8535 7327.1169 6393.6552 17080.0471 328467135 amyA Carbon Cycling Carbon degradation Starch Listeria monocytogenes J1816 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 4335.5915 4293.3813 3141.1948 3885.2521 7207.9241 4957.1143 2042.0774 4311.3135 167667801 amie Organic Remediation Aromatics Other aromatics Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 6524.0239 7416.8626 7416.8626 7670.932 337747757 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8725.8741 5790.1161 3702.0433 3201.256 3201.256 6485.8776 8579.9583 2326.4421 4779.6044 7303.815 3140.2914 8437.9205 391833 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 5764.3897 47534.3802 3139.7148 3951.3912 3502.6441 3290.8203 6525.564 3744.64455 12510.6132 3166.9472 302877277 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 12190.8015 10761.2729 8188.6597 20164.1657 6853.2917 73205.5324 4734.1945 9501.8544 6101.5638 5068.9143 3969.2051 5168.1585 5043.7787 19006.2423 2067.2967 4480.6269 3383.6151 148263215 terc Metal Homeostasis Tellurium Detoxification Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 4163.0955 5451.8428 2229.8893 4122.2387 2933.1644 4087.4103 2573.5802 97350.8769 3850.4034 7864.1956 5174.682 5226.4741 2478.5192 6490.7689 2518.7318 8028.6146 5105.6234 5331.7509 2797.3222 3889.7946 2871.8364 5282.8126 251772085 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4325.8175 7743.1089 3264.5137 2538.9661 5689.5526 8712.2983 2416.1134 66668.4988 4012.5055 6836.9321 2281.3724 2281.3724 5335.2506 9284.6806 4965.5757 6526.4121 4874.0806 6624.4717 5326.5873 4020.8293 18724.5527 11405.805 10887.0127 6884.0186 8485.2967 3707.7812 5381.4931 3478.8935 2241.6638 12201.4913 50982470 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6689.8467 14756.1204 16101.5849 6152.8099 3741.2756 6228.4262 111330.3973 9403.8608 4065.4869 4609.4037 3143.3211 3143.3211 2935.1429 10275.1129 55480.9013 5580.8851 3822.0596 3089.2264 14516.214 3239.7499 16840.1471 129904.8557 10555.4182 4682.4632 4610.645 3940.6173 5258.0917 5558.9324 109456276 TIM Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 23131.3902 10720.8057 3488.8472 7859.5117 2198.9816 9595.4151 5848.8426 1848.1768 2954.5753 17259.3509 6858.5093 380509740 xyla Carbon Cycling Carbon degradation Hemicellulose Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 7007.7138 4768.3495 4519.5337 6647.3312 6647.3312 3749.0021 11375.5254 5667.2178 5780.8414 11263.2536 3717.7842 8284.9593 7478.631 2374.1689 2506.2045 5406.6786 148554460 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 13073.0505 6141.5925 386383777 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 36908.1289 3460.8568 4167.673 7475.9543 5089.7043 5557.7783 156740616 ara Carbon Cycling Carbon degradation Hemicellulose Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 8261.0677 170109348 Dyp Organic Remediation halogenated compounds NA Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 4352.434 2546.201 62587.2438 3313.8693 4838.8312 3554.752 6382.7877 2071.057 7347.4619 1939.5158 11922.3472 5222.5101 5504.0216 3304.3425 2469.5316 5038.9065 2294.4227 4436.2438 146188132 mer Metal Homeostasis Mercury Detoxification Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 168501.2141 119955.2342 3114.6215 4899.7915 7674.4593 3003.9177 354958788 linb Organic Remediation Pesticides related compound NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5012.7208 17408.1859 6059.6465 2970.908 83569.3246 4010.0519 4742.8068 3526.7136 3526.7136 9481.4044 11756.1956 6260.9511 2647.3545 6241.3273 9084.9031 6699.6926 6005.3185 2705.8661 3111.7364 4614.2099 333442363 tktA Carbon Cycling Carbon fixation Calvin cycle Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 4177.5869 16884.7288 3242.4771 7704.4346 14001.6366 16292.7707 59128.6807 7761.863 34420.4417 5439.0025 5439.0025 35264.4059 7323.663 6919.1729 36801.8912 7696.0253 5717.9073 2184.3494 4852.4788 6217.1972 65481.8214 10733.9034 5017.7036 8471.2026 2974.8981 31561.7491 4769.066 3828.7983 116610554 xylc Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4416.4429 6656.6029 4116.5854 3410.6328 2736.4145 5312.3433 7219.3196 11953.4555 56880.206 4710.0935 7408.5104 4440.6599 4406.8596 4406.8596 3121.3854 7145.5719 7417.0808 3982.6108 13810.3989 5315.7653 6776.9889 4109.4501 11119.5197 2642.3375 16347.7029 7712.6666 6485.0445 1892.236 4276.3086 7078.572 3089.2589 5360.6536 37527167 amyA Carbon Cycling Carbon degradation Starch Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 5392.4704 2179.4411 7926.3122 5553.5281 4725.9253 75585.4375 3826.3206 3391.567 4549.8262 19459.6278 3162.4813 8697.2002 9255.7632 2155.56 3242.3909 99036723 phn Organic Remediation Herbicides related compound NA Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6427.8395 6219.3904 3847.0884 10281.2344 2516.5572 2516.5572 2036.6843 116043898 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4981.1265 4264.1496 320150707 aoxb Metal Homeostasis Arsenic Detoxification Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 4241.8998 1777.7506 73539509 catechol_b Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 303576.0719 8993.7142 3257.3682 20535.9768 3750.0802 6924.3661 6120.7189 9253.612 26641.2109 6086.6774 4986.614 2774.7565 339282943 mnp Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 4538.5026 4709.7229 5572.5677 2762.8604 31232.9434 184907.358 3611.3285 6431.9912 6114.4917 3407.3224 3407.3224 10873.1493 11283.2162 4123.6691 4266.9231 4025.6695 10992.4912 17907.652 23407.0217 4824.3212 14133.8303 3023.5318 5745.6862 6273.0891 11932.6448 319741615 cmci Organic Remediation Aromatics Other aromatics Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 9728.237 2531.5325 2531.5325 6804.8194 6471.3465 4069.994 2241.2748 19731.0937 5462.9861 4861.3078 10558.9655 205351019 narg Nitrogen Denitrification NA Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6157.9254 2456.4477 8872.1634 223961300 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 6463.3232 8217.3356 2762.5519 2621.844 2957.1322 80926.4869 5166.8618 4212.8392 9800.436 4601.6734 4292.5165 5803.0244 3220.09 7289.8178 9621.8473 5440.4975 5894.2522 2173.8783 3140.2475 2774.0323 320150395 catechol_b Organic Remediation Aromatics Other aromatics Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 5150.723 8967.2851 2919.1672 9847.7669 3281.5221 6124.4078 8438.8877 80432.92 3516.1317 3775.4668 4283.8979 4283.8979 3168.1279 7580.9045 3991.9407 4211.5107 4028.3141 3707.0554 5172.6712 2159.9474 17443.5509 4445.6608 7269.0476 1839.4247 9934.4612 7341.5002 33640918 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 11379.7791 44104.3407 3969.4912 2965.5368 5605.0459 2514.8884 2514.8884 3002.2601 124516097 aps_apra Sulfur adenylylsulfate reductase NA Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4074.0964 2235.3208 3715.4877 5390.1718 4003.2156 2819.0441 17363.9676 4879.8896 6323.2495 10886.7318 6007.8919 5430.4191 3294.7501 8669.2682 2185.0158 10066.9621 7169.1954 1701.6834 5626.2769 3787.5718 2704.9723 343761919 amie Organic Remediation Aromatics Other aromatics Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 5132.379 259448010 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermoplasma volcanium superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 23871.5975 6374.0219 3350.2531 5370.6267 8930.9536 3287.0921 13628.0752 6902.1373 9941.0008 2219.0315 2774.0009 316950732 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4087.4221 9993.83 6222.3745 4788.1557 5052.8273 2762.4199 3564.7184 6802.4436 6060.9965 78035.5735 7397.6895 4696.2469 3640.7973 3640.7973 2916.3519 9630.7034 5567.1891 4696.1243 21939.4841 7005.3473 7622.481 3720.9053 18287.4493 6625.4286 10745.7788 13984.1077 9432.1938 7317.3079 8682.0256 6292.2287 342316498 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6446.4634 7865.1549 30278.9609 89896.28 5450.194 2610.2138 2610.2138 7996.8734 5453.6608 4105.4794 2037.4979 2962.8665 2497.0752 5158.4557 359311055 cysJ Sulfur Reduction NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 13679.3878 7191.7786 2738.1068 3696.159 4754.9769 2754.0642 69677.1695 3490.6169 4705.0165 5121.9166 5121.9166 3533.8186 5882.174 5351.8114 3769.0504 3241.4012 8476.4725 2957.0121 11036.4233 6131.0016 4441.7504 5042.4046 3876.8404 2808.2631 4705.0213 348618410 FBPase Carbon Cycling Carbon fixation Calvin cycle Candidatus Glomeribacter gigasporarum BEG34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 11107.0995 3488.1547 2797.0454 10056.3289 5580.815 3974.888 4416.4979 5468.7335 3613.0455 3613.0455 6707.5621 9099.1487 11097.0337 9223.6385 7102.5736 11590.7039 20005.038 4963.0531 15066.3617 15310.4857 14049.9448 6883.6993 3257.0067 8634.1022 5537.4938 345865387 fccab Sulfur Sulfide Oxidation NA endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 4240.7625 4312.1194 2746.0656 3268.9814 3423.097 4242.6039 88924.7752 14753.4338 24065.5913 26281.4412 14844.9723 3358.0664 295705237 cysJ Sulfur Reduction NA Bacillus megaterium DSM 319 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 5457.9006 7394.3246 389631140 bph Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 3715.9092 23246.3515 2594.8759 10097.0248 10097.0248 4566.2017 9159.6366 2443.0964 4682.8022 21138.9699 167358754 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4561.49 288942447 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 5966.4686 9585.2347 8850.5518 2797.7144 9024.065 3596.6799 79357.8637 4649.5325 3723.4355 2668.7857 2668.7857 2719.5152 11506.7807 5727.7353 7561.0033 4346.668 6802.1326 3339.5895 2699.3672 11350.8087 4449.4864 27697.9934 11259.9562 8547.4281 2392.8933 3898.3635 3953.7903 5565.3783 6116.2125 68243919 nifh Nitrogen Nitrogen fixation NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 7398.9249 380683803 amyA Carbon Cycling Carbon degradation Starch Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 4375.2167 8380.4927 2578.2969 3572.0034 10049.8901 4106.2922 60263.6447 3439.068 10681.0163 10681.0163 4207.6598 7230.3583 4541.7449 7131.5286 4852.4283 6362.046 3556.7854 9060.3562 8918.9114 6192.491 7387.4164 3055.4758 3560.7415 5291.6845 3460.4526 392428677 amyA Carbon Cycling Carbon degradation Starch Streptococcus intermedius JTH08 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus intermedius; 160076.854 7663.1719 171088037 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4979.7485 2939.6637 154151047 mer Metal Homeostasis Mercury Detoxification Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 7380.2044 5123.3809 146310122 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 4528.6867 2465.6703 1942.5495 355385218 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 9552.1179 7760.9371 5904.5672 4086.4453 3056.2035 3056.2035 6600.8277 2927.4127 8781.157 9326.0707 1633.6757 4984.2525 98299.4743 5764.5425 50122468 cysJ Sulfur Reduction NA Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4219.7856 2252.5296 2830.7793 9029.1349 2237.4378 110680181 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7894.1055 2761.988 129398.0703 2082.2132 2082.2132 6345.175 4240.9899 2611.6805 4368.5465 6546.5129 2171.7877 3027.2783 5042.9803 3662.7236 21693.1856 297626897 ppx Phosphorus Polyphosphate degradation NA Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 33178.4731 7570.3077 42779.2529 4197.4414 3497.7436 3270.7247 89680.975 3975.947 6870.5218 6870.5218 6127.6898 10649.7475 8159.5024 6579.8082 20738.0341 6861.2659 288915323 tktA Carbon Cycling Carbon fixation Calvin cycle Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 4930.681 2772.788 2184.4841 2259.5127 4050.0693 5684.7836 97681.3291 4066.5715 4282.6105 3171.6683 3171.6683 3599.1929 6262.5754 5801.3853 6190.5048 7670.0959 4436.5089 4598.9001 5816.0606 2142.7602 8157.371 5333.3859 6424.2531 1672.5413 19600.083 4260.4422 3090.4977 7663.8176 116205994 phenol_oxidase Carbon Cycling Carbon degradation Lignin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 10937.0099 11078.9037 84273.7434 3796.3625 2094.6913 2094.6913 6133.3871 5351.5697 8919.2256 5232.0824 4941.426 3268.2548 3064.8678 3099.3099 5223.1945 377529358 merb Metal Homeostasis Mercury Detoxification Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 14022.0571 26218.1584 2388.7159 4986.9379 6123.0253 3864.09 88629.1134 5886.7859 7458.085 2425.19 2425.19 3367.8253 8676.6062 8395.2918 5740.1395 5531.8949 6018.7441 3540.4482 4032.8528 10084.8752 7605.6208 19022.4132 12624.6236 14434.5949 5558.6977 4678.0293 8747.33 3852.8308 6877.3947 4633562 nosz Nitrogen Denitrification NA uncultured bacterium 696L superkingdom:Bacteria; 156767.3343 343920280 PRI Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 5015.7683 15271.7355 225019681 ppk Phosphorus Polyphosphate synthesis NA Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 13443.3889 6341.1301 6044.4429 11919.1425 5670.8752 3077.6593 3140.4781 5824.9723 3491.5364 5381.0555 1989.1811 294629486 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5246.4793 2436.3594 2935.722 7633.6012 4965.1589 2195.1553 3246.0664 5595.2767 378219660 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli DEC13E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 4128.0991 2432.5199 4065.5871 12120.7433 8682.5801 6419.6536 2937.165 8955.5259 6974.0326 4608.6784 3692.2619 344174459 ppk Phosphorus Polyphosphate synthesis NA Ralstonia syzygii R24 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 8004.2929 10986.91 315644564 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4226.1041 7414.5668 9647.6655 3584.253 92324.1896 4376.6649 5549.9492 1982.4704 1982.4704 7043.6844 5358.7327 3384.7894 7169.9601 3962.5757 2520.0647 3013.1284 5852.683 5614.1621 2879.5599 3425.6458 2992.427 2749.1266 5499.6643 166200724 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4374.3588 3717.532 4984.7981 4185.9952 109640289 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 4232.6041 15116.4495 95257.2222 6344.4748 3231.7339 3231.7339 3598.5945 2198.6904 7476.3351 4720.8752 304392546 tktA Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 12724.8697 37158.8757 55192.3963 16590.8572 7312.584 4074.4549 8449.6833 3169.7901 136427.2613 8724.1567 10336.179 12011.6565 13874.1553 13874.1553 3082.0833 15419.8062 10115.7767 16535.5364 7605.5875 5800.2685 23514.9084 3965.3365 18102.5946 18145.1119 16653.4023 5446.623 6631.5266 2443.6625 332377374 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6357.2699 10379.671 3006.6749 4395.6393 35753.9999 5256.791 3895.7248 30109.1656 302194596 RgaE Carbon Cycling Carbon degradation Pectin Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 5110.341 14490.21 3448.9448 84506.3744 4517.5191 3385.7032 3385.7032 17217.7597 19802.0045 5942.6051 3936.4555 1933.0798 8871.2562 93352926 dehh Organic Remediation Chlorinated solvents NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 18979.5797 3396.3431 4905.0251 68072.2801 9246.3345 3867.2581 3557.7788 8037.9215 2703.1659 9015.5344 12340.1363 4404.1495 6208.6639 2505.8594 4097.7304 3730.1476 2884.6393 219121210 mg_chelatase Secondary metabolism Pigments Chlorophyll Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 6297.1897 77378753 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15378.1747 89103.0502 123289.8359 3271.3702 67856.3875 2307.54 9228.9213 12995.944 7287.4033 146479.3707 18310.7508 23530.4366 18310.1424 9667.5433 9667.5433 11991.0724 34917.1093 42672.7833 11360.4054 78665.9881 5781.8538 71794.7794 38281.2188 63227.0661 17399.5771 17042.6431 29236.6856 4100.121 338234077 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 6588.6512 2398.5965 2861.4115 21141.3042 6845.3552 6339.4414 6339.4414 8589.0036 2929.7274 7930.4916 4344.2555 4784.6806 4753.516 4803694 ppx Phosphorus Polyphosphate degradation NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11979.9678 17727.4606 2423.0556 2565.0803 9063613.8394 2093.1473 2093.1473 30433.8043 33245.9224 2342.8226 4266.5356 4784.6606 188993476 mer Metal Homeostasis Mercury Detoxification Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 5189.8939 18601.9299 3531.7647 1772.1276 86139512 one_ring_12diox Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4885.0384 3645.6707 10144.2361 2533.9567 3574.7606 15566.8536 9811.1316 4147.6794 3431.3254 8520.9593 6254.7277 3085.7564 2390.1514 170027477 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6608.8905 26098.325 8800.5545 2736.7207 4770.4878 6850.7599 4556.3331 3560.0273 4907.1596 21464.4555 15249.8624 15249.8624 13432.3012 9123.7944 4610.349 14008.935 9283.1807 2283.7119 5036.0515 16834.9904 3117.4144 4298.2045 5254.9658 20054.4203 8023.5224 4262.8566 56689.4592 76056965 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7718.358 101515.803 3487.4245 15108.2206 7339.7798 2281.7494 275047.6227 6478.8466 10426.9782 3075.9327 3075.9327 5655.4262 8142.8381 2136.9191 13518.2416 3753.116 5727.1431 2982.0412 7897.2891 7931.5531 2219.9932 76577432 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26069.2385 4730.8657 2167.1615 2317.4 256859558 amie Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6177.035 2497.3967 11736.1172 3469.9576 4739.4557 157370564 cellobiase Carbon Cycling Carbon degradation Cellulose Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 4286.2696 81234.0484 2739.0983 193997018 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 7212.9107 32190.0064 21350.1764 3535.9425 2208.7874 5658.5351 82300.6007 4490.4613 6264.4702 7553.6357 4632.1733 4632.1733 4305.8193 4026.4455 5450.5461 11922.1163 7127.1903 8880.7292 2470.2966 4084.2245 3759.9912 150858265 ara Carbon Cycling Carbon degradation Hemicellulose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 11242.4022 19900.2677 5850.6604 386287410 bphF1 Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4904.8106 5880.6263 289449380 amyA Carbon Cycling Carbon degradation Starch Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 4222.1046 296453292 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. longum JDM301 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 4427.7734 12415.6296 2960.3866 4884.6441 2217.8912 66826.3098 4913.6493 17893.6432 10019.8219 5724.0193 5724.0193 8924.9939 7157.4578 5086.8108 2239.7326 3316.7828 10303.1845 2653.0097 8974.7954 8664.732 7358.9267 3491.4765 5321.877 2358.7007 4417.9607 33320478 dsrB Sulfur sulfite reduction NA Desulfobacterium oleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus; 5006.9973 14645.0063 3126.7395 5635.4869 4329.2032 6933.5872 2352.3891 66237.5608 13919.5084 3783.6784 2508.1196 2508.1196 3663.4176 14910.2758 6503.8502 4953.2528 6334.5961 2781.6807 4860.1519 32870.1843 5440.7086 18328.3525 16181.2595 10237.2458 44945.01 6087.755 32803.5006 4478.5406 337279878 ben_bcla virulence NA NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 6379.4717 2063.6827 2431.7625 3445.4904 60530.2049 4771.3304 48585.4998 2426.6658 2426.6658 3313.8389 6124.1779 7471.0474 35325.7042 2646.1329 16395.2544 7985.985 5219.2772 2320.1258 4273.5637 3782.1045 6409.1473 269786029 nosz Nitrogen Denitrification NA Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 15114.2739 2249.653 2922.8053 6181.4632 4589.8733 3021.5451 3270.6779 2787.9594 8711.7027 6184.3159 7153.1539 3780.3463 254469344 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 7194.1791 379989191 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5069.3819 1967.9221 4886.602 3707.4949 4335.2683 10308.617 5217.53 1864.9067 118021972 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 5169.8904 221197030 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia multivorans CGD2M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 5210.7541 3336.7122 3394.0736 3877.735 5486.9422 96138.6766 5333.5957 5173.9644 3134.7892 6151.858 5833.9943 4830.6542 2674.3193 3032.4685 19638.6297 4842.1635 6402.2576 4751.7542 4266.4886 4427.3529 5647.5325 6776.7646 90336696 phdk Organic Remediation Polycyclic aromatics NA Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 5030.8007 9533.2536 2133.0876 3737.4358 12418.672 4199.9113 68801.5539 7792.3603 3422.7283 23299.7358 3204.1082 7509.8225 6538.2338 5535.5216 5314.3187 3012.1258 6119.2691 3822.2151 10499.8838 6784.5117 2988.9513 3987.8597 5173.1867 2291.0067 5344.043 219847902 MMCE Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 14797.3288 8791.1416 9227.772 5473.7989 2344.6165 2030.1254 2030.1254 5743.4284 14667.4475 5883.3537 7601.006 7216.9248 1894.7571 2264400 phenol_oxidase Carbon Cycling Carbon degradation Lignin basidiomycete CECT 20197 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 4654.5065 5692.4002 3562.9532 73712.1282 3227.6672 242731.4799 4128.8844 5153.1413 4688.0355 4227.177 2498.2095 7598.774 6909.4109 4742.8051 8306.103 3357.1449 3549.3308 2943.7784 4348.4247 289163710 bphF1 Organic Remediation Aromatics Polycyclic aromatics Legionella longbeachae NSW150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 4829.1861 10476.8213 7630.4357 63311.0275 3957.3647 3561.1029 24142.3358 2393.9456 4776.4517 3240.8431 2145.4732 2160705 Dyp Organic Remediation halogenated compounds NA Polyporaceae sp. superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae; 154050.1813 7761.3298 4476.6811 3955.4948 238612300 glx Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 5856.0066 3679.5265 2231.8327 143670.7692 3935.0904 4264.8201 2691.6477 5367.5525 3613.5984 218645701 phytase Phosphorus Phytic acid hydrolysis NA Buttiauxella gaviniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella; 4691.4385 11442.9056 3182.4572 3335.585 3657.9402 93538.1185 4007.4251 6629.5144 12403.9208 2833.6572 2833.6572 3367.1276 7840.0667 5249.976 30115.1345 3087.53 7398.1572 2427.3262 9119.5141 6019.7428 7360.3344 2163.9141 3938.5945 3501.524 3393.8498 5959.2268 311031263 pula Carbon Cycling Carbon degradation Starch Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 7557.7395 197303718 amyA Carbon Cycling Carbon degradation Starch Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 11056.0561 3022.8929 3315.7178 84892.8351 2606.0698 8520.0378 4045.8237 6276.3209 4521.1877 4873.5196 2904.5367 4279.4702 5711.0094 3153.3605 1923.8736 6223.2221 377526045 narg Nitrogen Denitrification NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 18848.0367 46480.8332 3908.9904 3303.3087 3303.3087 5783.1052 2130.3969 9225.5909 2178.339 4369.3063 156934116 ara Carbon Cycling Carbon degradation Hemicellulose Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 4395.3896 378763864 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4143.2226 11014.1333 3526.7179 268661.0189 4241.3703 17390.3887 5834.3251 15288.0874 3906.8675 1522.8547 18512.9622 237886075 bphF1 Organic Remediation Aromatics Polycyclic aromatics Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 4034.0791 10510.5923 3973.5798 22177.6654 7161.8261 100092.3179 3271.1306 5531.0536 5231.2535 5231.2535 5678.467 9291.9214 7224.0317 3302.2633 7579.9399 8306.1102 4419.9267 7071.0895 5996.2682 3845.9495 5458.2239 9453.3596 332516757 amyA Carbon Cycling Carbon degradation Starch Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 6100.4958 8190.0317 6240.3117 3378.5454 3378.5454 16411.3464 14713.3193 4099.2361 116223956 vana Carbon Cycling Carbon degradation Vanillin/Lignin Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 4962.3831 238786801 cysJ Sulfur Reduction NA Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 5438.5223 10656.6922 59925.0672 7705.1646 3289.9981 3289.9981 6306.2838 347012437 dehh109 Organic Remediation Chlorinated solvents NA Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 7040.8289 10675.4158 2740.5865 4538.5622 5270.9766 11054.087 7208.3827 2725.3013 4275.0596 7121.4817 3345.9734 15006.8858 4786.4611 121488.7845 2886.1423 4245.4802 8967.8969 8446.4233 66840877 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5164.6663 7657.4019 16693.8652 18428.4642 3544.1109 7709.8171 7709.8171 3701.0384 5692.2626 2185.2554 25615.637 3610.8473 5308.1473 2438.0397 4909.3283 4514.9721 2320.4772 225874254 pme Carbon Cycling Carbon degradation Pectin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 4012.6863 66224.2924 6383.4974 4459.3027 2322.1907 9707.2988 5574.809 2196.0608 114767497 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 4275.7905 13057.7391 6225.3193 7359.4665 3981.096 10226.3801 5115.1654 10692.2477 132894.7427 7258.7061 16125.0236 10749.5231 10749.5231 7546.0096 3336.1242 16783.819 4633.2792 2776.7466 138646.3485 7376.5965 9407.3307 9617.4685 4738.332 22844.6283 18721.4417 5228.9486 60116876 protease_serine_fungi Carbon Cycling Carbon degradation protein Davidiella tassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Davidiellaceae;genus:Davidiella; 8709.8046 9858.6796 15594.7283 6471.7772 4327.9297 3512.8056 62765.0268 5378.4377 12185.3839 4733.599 5015.5329 5015.5329 7837.7108 5203.7585 4424.3481 3230.864 9713.5225 2734.0411 9706.4625 7430.3998 7891.2926 3554.958 16884.2445 3597.988 9194.3606 375363561 chrr Metal Homeostasis Chromium Detoxification Bacillus amyloliquefaciens subsp. plantarum CAU B946 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 5251.614 2762.5712 3065.2064 3351.7263 5298.9896 9275.4046 4440.8378 2768.1427 3375.9294 353464337 xylc Organic Remediation Aromatics BTEX and related aromatics Xanthomonas oryzae pv. oryzicola BLS256 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas oryzae; 4852.531 23348.7597 2310.3047 2310.3047 300390368 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4990.1646 4187.3005 6609.9447 3522.5584 4533.3932 5142.7049 5607.955 2440.9194 2797.5896 2053.0393 297567798 SoxA Sulfur Sulfur Oxidation NA Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 10955.1783 8455.6578 2235.0726 17189.6266 8382.127 118855.9073 13558.4147 5101.29 5101.29 14904.6576 72094.4117 30009.8422 27206.7191 6376.414 257233.7379 12472.6664 8801.2277 6818.9427 30750.9736 13849.6685 9456.155 3811.3162 12269.4175 9963.6431 51317.4824 59124.3129 293375088 amyA Carbon Cycling Carbon degradation Starch Turicibacter sanguinis PC909 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter;species:Turicibacter sanguinis; 16903.9312 2908.3683 5532.375 342818072 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 20577.4006 238490436 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 9587.7701 10291.6841 3347.2073 2599.6206 2599.6206 5085.9112 2603.0368 6749.8498 5064.6891 8678.1114 2519.4654 4360.0138 221218407 cda Carbon Cycling Carbon degradation Starch Bacillus clarkii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11247.5381 341641296 cda Carbon Cycling Carbon degradation Starch Vibrio cholerae HE-09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 4463.8149 299524961 pgk Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 15786.1763 7604.9154 9218.9022 3896.3814 2779.3507 2779.3507 20770.3588 13826.0558 6999.6667 5316.2954 3573.863 238755854 chitinase Carbon Cycling Carbon degradation Chitin Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 4712.2244 256560135 chitinase Carbon Cycling Carbon degradation Chitin Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 7837.8165 5023.2512 334683923 mer Metal Homeostasis Mercury Detoxification Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 4190.3826 20098.4445 11285.8204 6045.217 98227.5733 5420.5759 6274.3103 4139.7203 4139.7203 8124.1153 5133.5813 6001.264 3505.8114 33520805 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4032.7064 10724.9867 1942.1345 1942.1345 5613.6182 12667630 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr610-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 11877.0443 10375.5308 5840.9128 3446.6524 3270.8043 2758.4565 226027.9853 18477.4662 7474.3454 11831.2758 7405.9037 2889.7971 2489.4827 10878.217 7484.3128 308739769 atza Organic Remediation Herbicides related compound NA Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 4637.2996 5878.7109 280977867 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Cellulosilyticum ruminicola superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum; 7769.2976 393757537 one_ring_23diox Organic Remediation Aromatics Other aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 7084.0663 2744.7413 99582.5439 5975.7958 3530.3222 25015.6626 5769.092 4244.0058 2989.1649 2811.5393 8827.3149 7977.7986 1898.3089 3318.9126 3022.7817 9186.4942 15127832 msmabcd Organic Remediation Others NA Marinosulfonomonas methylotropha superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Marinosulfonomonas; 5203.0121 15001.9008 8975.5895 4732.518 64391.9907 5368.644 5670.3864 7661.2315 4227.6899 2706.5135 4781.1284 6260.7256 2722.5645 11305.4097 290471427 amyA Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 6734.5291 16622.5017 131591.4463 3038.4272 4547.5455 36104.5242 6223.0952 4946.2091 9558.8858 16157.6245 6819.5949 6819.5949 3629.8294 7743.9068 5890.226 8337.0234 2860.8109 8933.7206 7151.8221 12933.0114 8772.7417 8503.452 3592.5813 4472.2526 4652.3287 5344.7063 254510328 linc Organic Remediation Pesticides related compound NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4528.4715 2216.1585 2377.9054 5066.2744 3770.247 88593.8823 4044.4059 4776.8182 2429.0382 2429.0382 4282.3168 11226.692 4234.8744 4875.8688 4019.3217 3773.203 2730.7346 18976.721 2036.7104 8464.0182 3419.8347 1811.709 2963.5346 3543.4137 3659.5679 377813696 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5441.9621 2451.0896 81263.9677 255010727 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 4842.6742 3127.4843 10753.5104 5618.8497 5854.8833 5854.8833 18311.953 2249.419 259659263 TIM Carbon Cycling Carbon fixation Calvin cycle Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 35436.4691 8409.6552 4997.8263 116061994 rd Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 4525.5423 86556478 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5043.7927 2588.6295 60654.9426 3787.1656 4547.6044 3304.4331 4873.2969 1697.6121 3902.7702 384068316 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 8729.804 18476.0445 4955.008 3115.6982 2876.5665 5127.7842 5624.4953 106209.0626 4253.0511 4139.9921 6058.4705 6058.4705 8245.9204 7076.3641 5558.5313 8883.6615 2544.3236 3230.148 12465.7306 2751.6887 12126.5034 7545.5023 8970.212 2939.466 3820.5016 2836.4248 5392.4538 111147441 vana Carbon Cycling Carbon degradation Vanillin/Lignin Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 10972.8985 8632.2331 4173.9068 4046.0215 3253.6286 4134.029 2405.8576 2510.8911 4943.1902 2099.0859 3795.9689 2596.056 6378.0465 359777800 ppk Phosphorus Polyphosphate synthesis NA Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 8146.3743 12171.7628 4743.3975 2237.4074 3033.3458 11619.8244 4304.5028 68737.3501 4969.6332 24892.5823 8313.0007 4888.8033 4888.8033 8893.1143 5390.9485 2682.4757 13265.0516 6647.1873 9320.4932 2467.5627 4192.1762 157679455 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8105.6241 24098.9397 18055.3403 7800.7099 5843.3901 2982.0299 3708.497 4168.4335 3942.9757 142427.177 5444.5958 8208.1665 14296.0571 8553.2025 8553.2025 3720.2721 9159.8864 7643.1705 22201.1374 10942.8469 2674.0613 2870.6941 10025.0043 10365.7874 9337.3852 11116.8779 3026.3372 4688.8093 4031.5285 2495.3832 322512606 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured organism 6971.748 4964.5175 4864.7957 2225.4766 33566761 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Bordetella parapertussis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 636671.1912 3553.8126 3718.7369 4691.6657 3832.0263 5271.647 10083.8563 8304.3217 9753.012 218989136 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lactarius lignyotus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 4473.0373 11021.73 4782.7363 2968.4845 152555.7347 3275.9069 28665.234 3701.7562 130157.727 23064.7368 9220.7284 3625.5448 3625.5448 4023.9322 37853.3978 15182.2473 6863.3867 36694.0096 7507.0478 3325.2461 6905.5695 8782.5938 20493.0872 12426.6337 14392.2963 5311.2463 9878.0003 5000.1536 16872.8973 10315.7072 398818699 nbac Organic Remediation Aromatics Nitoaromatics Brevibacillus sp. BC25 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 6155.7423 2639.8852 4471.3258 4214.0976 4150.2513 3429.921 4490.9124 2011.1942 255943919 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5650.0794 6235.8712 3287.298 12659.352 2912.0823 139338.2567 7591.2982 5259.5694 11660.59 8313.5031 8313.5031 6933.4726 3443.5958 3878.292 5711.4085 9544.5051 9153.0203 10232.9845 5363.8655 13553.5294 4190.5766 6743.0944 46138387 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6118.1103 5229.7523 3953.0894 4283.3063 14413.809 2271.4158 237715094 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides sp. D1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 11624.3548 92610.4434 5061.893 4499.8619 4395.5978 10114.0661 5762.1129 6246.0697 1853.9969 5013.1197 390435966 ppx Phosphorus Polyphosphate degradation NA Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 4570.8901 12444.4014 3227.537 3406.5794 5113.3462 3091.7671 131870.5835 9069.4694 6083.198 2263.5143 2263.5143 4014.2163 12468.4912 15249.9419 4233.9772 8154.7859 4593.7684 2888.3029 4310.1622 10235.0739 2465.0008 15732.2455 8927.9593 12648.7251 3537.9016 4107.2927 167499.6402 2261.512 9014.5509 227191693 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 5502.2923 9768.3338 3069.8784 4587.8646 2695.7089 2007.9129 77545776 nifh Nitrogen Nitrogen fixation NA Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 5486.6902 247530.283 61456.3542 33746.4243 5744.2028 4045.855 10709.67 6603.881 6947.7923 1797.3939 290473635 chitinase Carbon Cycling Carbon degradation Chitin Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 7004.026 7206.5695 3667.2945 11324.7473 2715.362 7490.3632 5674.6601 4958.3319 117771.1151 8819.9667 6546.3738 6172.1102 2911.7096 2911.7096 6764.0959 6442.6649 3667.175 8298.093 4025.1412 5832.3774 7472.7661 4756.6923 17087.6119 4523.9948 6167.2583 8622.7422 3819.7697 4270.2215 2034.4064 6368.5984 77378641 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7803.8836 11573.677 3330.0057 4241.1618 16384.8211 4869.851 3747.2488 5737.3713 5737.3713 3633.8727 3494.3552 30107.4021 17878.4725 4709.4473 2091.9143 5074.838 9549.6655 19691.087 6956.1567 3938.7529 5240.3645 6955.3555 2684.4503 5359.9552 338820385 mer Metal Homeostasis Mercury Detoxification Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 4813.5726 2700.2079 6975.8545 3767.1545 6610.2339 5710.9045 62976.4305 7662.065 7372.0183 4830.6437 6772.2953 5889.1702 5862.4233 3836.0789 2775.678 3054.3896 3897.938 5762.209 2572.6603 6167.2645 4125.5791 6824.4609 86556705 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5874.6323 4960.3647 239825084 pgk Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 7747.8881 87260.6658 39074.7121 6487.7528 1050304 glx Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 4543.8081 9670.1466 2509.7249 6646.4806 79608.1975 5142.0715 6016.1459 6016.1459 3619.0363 14773.1456 4773.1178 2260.3146 5253.472 12522.3173 6412.7105 6234.114 1777.6375 3598.045 4645.0638 4088.3439 377659731 sqr Sulfur Sulfide Oxidation NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 5023.5517 8527.1403 56814.4499 5655.6164 4367.0552 4479.3467 10844.3767 111071978 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5369.0013 2788.3148 4514.0718 6416.8538 4799.782 6827.6075 5727.7022 4828.3517 2113.9706 2113.9706 3004.9415 7738.9595 6751.6478 4680.2546 5551.2122 4737.7713 2207.7082 5478.3298 5943.703 2856.4241 7920.5962 4976.3257 6654.6805 2296.6506 2836.6459 1799.284 4383.1698 340788163 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 4647.4984 22837.9305 3256.0677 8540.8303 8643.6882 5985.246 5062.9388 5333.5304 5333.5304 7332.785 4887.981 3302.7556 8123.8738 9406.4364 8497.1757 4825.8417 3301.869 8407.4797 206603798 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 27139.7375 3171.1408 3291.2989 7333.0473 7747.0677 3014.3369 29550.1536 5249.0185 4458.6415 11356.7608 11356.7608 5194.2263 5157.0851 4394.9504 2534.7213 4425.9199 1994.5168 5744.7082 4387.321 3523.7878 66967048 xyla Carbon Cycling Carbon degradation Hemicellulose Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3984.7652 3429.4618 2661.9652 2661.9652 8362.8497 2314.7732 7568.7559 3982.7255 3342.7899 4607.0457 157913465 napa Nitrogen Dissimilatory N reduction NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 4188.5078 9797.1415 5093.8986 2783.7479 58939.7257 4058.0145 3935.5345 2854.4583 2854.4583 3317.3071 5455.1114 3077.4717 8959.4429 1916.9163 4926.0939 6500.6661 2379.0868 3094.6314 3675.4654 91788843 ben_bcla virulence NA NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 5599.5404 56413.4882 6252.4054 3795.5415 2017.2757 400975006 nfsa_2 Organic Remediation Aromatics Nitoaromatics Salinibacterium sp. PAMC 21357 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Salinibacterium; 17121.2944 20489.6212 11420.8881 13101.2802 2259.3127 2259.3127 5533.6965 5768.6605 5498.3707 4514.4168 155212964 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Natronorubrum sp. Tenzan-10 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronorubrum; 4231.0888 386346467 amyA Carbon Cycling Carbon degradation Starch Spirochaeta thermophila DSM 6578 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 7727.221 15266.5438 22114.187 4705.2193 2852.4798 6242.8127 6285.7364 4031.0971 4031.0971 7080.7027 5481.0266 4719.775 3404.1677 14969.5235 5524.118 10199.214 6199.5743 6237.5435 7703.5419 5083.0544 8146.4842 319898849 ppk Phosphorus Polyphosphate synthesis NA Bartonella clarridgeiae 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella clarridgeiae; 35976.2994 253574449 pula Carbon Cycling Carbon degradation Starch Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 5485.1005 2280.0464 3668.644 4813.8592 79634.6893 79634.6893 5667.5078 6338.6292 1851.0012 12107.8334 379990247 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 8719.485 4259.1755 4458.5532 179056.0917 6116.5639 6597.6566 3666.4018 2945.3091 4753.9866 5121.6169 4638.6738 351728218 ppx Phosphorus Polyphosphate degradation NA Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 40592.5783 10024.984 419577.8291 5247.489 2551.9 2551.9 6448.3917 5097.3142 4586.8513 4651.8554 6183.5888 9251.3874 4262.9217 2120.1271 5601.0068 422313937 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4970.3134 9168.1073 2174.0387 4286.441 2682.5962 2682.5962 7250.087 5757.2167 5589.2447 2265.1925 254468384 tktA Carbon Cycling Carbon fixation Calvin cycle beta proteobacterium KB13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 13558.3108 307546524 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 16958.1249 6043.8382 2308.5808 11343.3247 145240585 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 5742.169 2272.8961 26612.1559 112238.5019 4401.653 5230.9909 2764.6646 9691.0497 5206.262 5356.9423 2106.5776 4835.2109 157144628 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 6460.2087 38017.7032 3592.3212 4486.1461 5149.9839 5321.9969 3508.2567 2246.6631 2246.6631 2784.1066 8194.8855 5284.0219 6981.1078 5313.1488 4551.7446 2833.5094 6360.5289 3448.1484 10142.7237 4617.0491 6871.8299 1962.0578 3057.0586 4282.0288 3359.5325 4670.1674 119497581 Dyp Organic Remediation halogenated compounds NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 150433.4162 2579.83475 7924.8515 4074.767 7471.2084 6177.3946 4081.8047 2787.3201 2801.7101 206581044 cueo Metal Homeostasis Copper Detoxification Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 8348.1669 8250.1382 3711.0375 10039.4792 4354.1499 3055.7184 3055.7184 6298.0814 3964.168 10250.6193 3937.6693 10277.1954 3867.6134 4883.0349 54983.8622 158523636 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 12312.3649 4856.5445 5921.4246 4874.7535 64497.6937 3743.7785 2585.5453 3833.7379 4140.8725 2100.3378 2967.6571 2890.6791 2873.4963 261367313 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 6880.2521 5420.3415 2166.1358 3833.6289 5211.971 6985.617 3049.3388 3049.3388 3193.3735 7459.7494 4010.7773 129100.1176 5192.2493 5377.6879 10212.7437 11196.0515 9005.9999 5332.8142 5398.3304 7324.2415 3015.5081 2473.5569 9388.0858 84388652 amie Organic Remediation Aromatics Other aromatics Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 8932.9289 74557.9295 3219.1376 9167.5137 5321.3572 5102.0053 6392.0261 2292.9893 6320.9233 6120.4998 2067.9862 4070.1273 3923.0073 19386.1794 70673019 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 29107.7354 6307.5011 237883375 ara Carbon Cycling Carbon degradation Hemicellulose Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 4203.266 5587.1924 3919.0724 6405.8762 4165.5302 6752.7168 3590.9936 10899.7034 4281.3993 24741.8166 3130.0812 7620.7031 6971.4837 11209.2091 5497.6159 2278.2673 5049.5249 2672.2036 6014.4838 34557449 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 12101.5858 18031.6718 56962420 chitinase Carbon Cycling Carbon degradation Chitin Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 5576.2938 2871.2377 3086.4158 4112.7442 88236.5515 2558.9945 6720.6153 4319.3739 5925.8545 5564.1894 1895.3973 3970.7235 2420.0786 6115.3389 41222509 nasa Nitrogen Assimilatory N reduction NA Haloferax mediterranei superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 10402.7078 6816.5046 2724.9995 13242.1476 3797.5899 2041.0181 2041.0181 7368.5033 2783.45 2839.8612 7666.0067 1951.9083 93354183 dehh109 Organic Remediation Chlorinated solvents NA Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 20851.6021 4640.1165 4523.8322 291199381 amyA Carbon Cycling Carbon degradation Starch Erwinia amylovora ATCC 49946 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 4756.5911 390360.1571 359440858 alkj Organic Remediation Other Hydrocarbons NA Pseudoalteromonas sp. BSi20429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 9958.1677 6232.4235 2069.061 2069.061 3744.8995 298551043 amyA Carbon Cycling Carbon degradation Starch Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 4166.3459 3885.6974 2116.3068 2116.3068 5238.6272 6301.0783 6268.2463 14287.5943 10307.3666 4697.6571 6227.6492 2265.2753 5966.0719 4661.018 90954597 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4818.4435 3244.5465 159046436 amyA Carbon Cycling Carbon degradation Starch Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 6492.1309 36655.261 11670.0145 3581.965 4365.6037 3331.7515 8117.3293 3550.5036 135761.2349 8342.9558 6508.5275 8856.5052 12726.8475 12726.8475 3235.3926 10573.0525 7611.4893 6957.3019 7346.5566 4631.8005 2211.878 3277.0515 10800.4289 3233.3784 13977.688 9291.2041 12102.4688 5825.6311 3497.5728 4506.4878 3084.3825 115491969 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 4848.7583 11929.2157 3741.5855 3682.0279 4661.5166 4501.065 12226.8002 5926.6618 4170.5675 4916.7402 2670.7378 2490.4337 352517552 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Tetragenococcus halophilus NBRC 12172 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Tetragenococcus;species:Tetragenococcus halophilus; 4680.6405 7214.5423 17546256 ppx Phosphorus Polyphosphate degradation NA Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 7631.744 8319.9411 325962201 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 4773.1673 11504.5296 7922.5036 5988.7727 368767.8162 6665.9855 4620.5778 5821.5709 4759.3214 8096.0967 8096.0967 6219.3506 6337.1665 4598.9295 7367.1677 2821.2888 6839.531 10548.7488 1844.4716 3687.9369 5846.8624 300718113 cysI Sulfur Other NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 50937.8959 3677.7958 3413.3207 5144.1672 4346.3987 4080.8614 8307.1148 8307.1148 6886.3089 5979.2559 7011.8635 3368.1889 6583.8535 3267.0492 8504.0865 3341.962 3356.8566 3139.6593 7464.8747 164519664 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas ruminantium subsp. lactilytica superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 5328.2051 9583.8926 4002.729 1709.4736 146396933 tehb Metal Homeostasis Tellurium Detoxification Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 6890.5284 1934.9136 3939.7756 67578.5012 4179.8115 3697.5068 7237.1732 4202.6985 4888.3704 14980.6288 4917.9482 3349.8716 2184.1199 10005.539 5413.2977 6047.2171 2016.6259 4473.9156 3464.3962 2533.8003 7436.8686 9837268 endochitinase Carbon Cycling Carbon degradation Chitin Coniothyrium minitans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;genus:Coniothyrium; 16991.2574 24762.9534 8771.535 3928.8988 4039.602 5598.1908 222943.5868 5557.8092 4501.8249 8917.5259 5850.2339 5850.2339 10579.1658 5623.083 5297.3123 14034.5429 3093.5205 17055.0518 11839.2719 10489.1417 3853.5223 4615.9175 7525.5148 307613546 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris FB024-16 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 5903.2096 9316.6517 4179.3653 2707.3138 2707.3138 332878433 xylanase Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 4781.9856 395648218 cmci Organic Remediation Aromatics Other aromatics Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 6063.4735 152923.3458 8087.6373 3540.0439 12477.1702 5088.8882 6641.0114 90579656 chitinase Carbon Cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 4609.1195 7214.2553 2665.5335 78704.1713 3396.942 2665.0976 6165.1358 4561.1152 2760.0385 6256.4951 2368.223 3898.7816 5553.4804 2086.837 3098.2291 3696.0673 2202.4052 302890730 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4051.1614 3706.546 8338.1075 116264131 dehh109 Organic Remediation Chlorinated solvents NA Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 5151.6819 5179.2697 193213600 amyA Carbon Cycling Carbon degradation Starch Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 4373.6728 5084.9283 5016.6309 2509.0856 6460.4471 6364.6605 77715.6533 6444.5454 8110.1386 3808.7858 9488.2213 4933.2572 5222.7302 5057.4469 5496.5058 2382.1072 3380.3257 6182.5062 3430.6937 12808.2457 4802.5607 7585.5085 3214.1455 3188.8099 4669.3284 4074.2777 6724.9023 123440846 phn Organic Remediation Herbicides related compound NA Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 9134.4196 6205.6955 4770.1408 9008.7053 4487.8856 4375.2269 4375.2269 12230.2992 6924.8942 2689.8594 16925.5928 4105.3602 220903367 nrfa Nitrogen Dissimilatory N reduction NA Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 784905.075 13058.4437 9099.3939 25024.676 4238.9986 85525.6558 19939.1258 4914.297 21248.0195 11812.6231 17627.9074 17627.9074 192506.6402 24371.9336 5799.1839 14119.3148 10463.3349 16735.908 5127.6934 14877.9262 98561.0273 21110.3786 18468.2676 89279.9008 500764.4341 15266.8937 52728.6984 7714.8993 314933220 terc Metal Homeostasis Tellurium Detoxification Staphylococcus caprae C87 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus caprae; 4288.9918 119865886 phn Organic Remediation Herbicides related compound NA Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 6515.3711 390411331 chitinase Carbon Cycling Carbon degradation Chitin Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 4998.1643 3256.6482 5257.6315 83696.5236 5446.7526 3280.2711 3491.2161 4316.8567 4885.8865 4885.8865 2764.157 6683.9006 4489.954 4783.6368 5618.0506 12684.5464 109676.3857 7236.5559 8692.4045 7965.3029 4030.6283 2601.6623 169867661 ara Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4810.1094 7014.4611 4450.7663 3267.9769 6462.5849 4712.2542 14766.9063 3300.5377 76783.0679 10635.2052 10635.2052 3390.5628 7797.5621 15162.2432 12021.1988 2738.3874 3312.4533 8207.0081 3840.7067 15245.8451 5484.7907 7663.0207 2664.403 5355.6821 15464.1767 144905723 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4018.766 4207.7349 2096.9056 2096.9056 3960.9503 4592.8824 2259.8292 1978.518 218319114 bphb Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 3933.3275 7701.3026 2916.3139 8313.8221 61438.0527 4218.1099 3947.4968 3947.4968 16160.5331 2892.8356 9886.1866 3414.4876 8089.5193 3483.1923 2429.4925 357235883 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus criceti HS-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus criceti; 4006.8714 14582.1297 328812073 amyA Carbon Cycling Carbon degradation Starch Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 6245.7495 13647.9479 5151.3538 4393.3085 6201.9022 8014.4396 2943.6633 5809.9913 12563.0241 7776.5968 2020.1692 3003.8891 4726.5724 6207.7939 225194136 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4115.3141 10814.0557 6118.6303 2149.5874 10634.1714 5042.9941 9034.9333 9034.9333 3453.8091 3644.1468 3059.0001 3722.1499 5304.0087 1910.3583 2869.318 2263.4846 284158780 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 6562.5275 12954.1082 3324.1777 3020.8321 5051.3142 2587.1488 2587.1488 3552.3819 43369.6507 9415.9386 10789.6418 10337.4543 4818.01 1981.3023 357199454 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 5509.8992 88802.5096 4768.2126 9619.0322 3422.6333 3422.6333 2647.0533 6426.7696 4899.3198 24982.4851 6631.466 11348.2801 5866.9594 7602.6494 2741.769 2793.1023 3290.787 5262.6968 336276480 rgl Carbon Cycling Carbon degradation Pectin Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 6015.6859 8753.8677 61343.3071 6751.847 229933.1112 6035.6099 256686403 xylanase Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 4965.3617 6151.4394 9939.1454 7014.8396 7678.658 8055.6041 88909711 pmoa Carbon Cycling Methane Methane oxidation uncultured Methylocystis sp. GSC357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 82315.9715 3534.6977 66846839 amyA Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 11482.8492 7171.8135 2512.029 2512.029 5106.5521 10382.4626 4830.5753 8310.4604 6924.9626 19955.6818 4324.1229 8010.9769 7388.272 4056.9004 7152.7274 3033.9689 373941337 FBPase Carbon Cycling Carbon fixation Calvin cycle Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 7044.8973 30043.9596 7190.9655 3842.7275 3871.9111 5114.4721 6946.9257 1039460.2456 7209.2936 11944.0726 9071.6499 9071.6499 4387.3634 17826.3582 5534.6367 5469.9339 7268.6077 4598.7646 6395.9073 3112.4444 18774.3258 2622.2772 12031.1617 10851.6143 9826.0241 2957.3105 11609.4159 7259.4725 6528.4702 33284730 chitinase Carbon Cycling Carbon degradation Chitin Salinivibrio costicola superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Salinivibrio; 11248.9828 81703.2149 9992.5266 6538.7763 3389.5431 7874.8978 2545.1143 154221.4795 7002.4453 8142.4194 14041.0341 8380.734 8380.734 5535.9688 9846.2268 9046.9821 4684.5088 22219.7086 2551.069 16340.2335 10259.6867 12898.2596 4100.005 5522.8227 4934.0267 2191.995 296168688 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 4447.2236 11069.5315 5331.6319 164552.4765 4504.3493 4060.1115 2558.7392 280393.5877 5404.5953 6209.2859 2873.0061 2873.0061 5707.9671 10030.3739 4589.6623 11884.6343 38478.786 2336.0526 22655.4586 10345.9724 40809.0314 2767.0192 10230.2838 5527.4582 163855694 badh Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 7030.6291 9432.7717 7623.5115 5416.3849 2715.1611 3859.4675 7888.4564 5123.3161 4226.932 9898.0077 3464.4175 15510.8741 4141.6458 5016.4268 3552.3008 3694.2683 30630.8269 375079168 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4349.5849 1962.3236 2411.6679 5068.938 2193.8765 16032.5791 3949.1234 4798.9612 2715.9618 2969.533 2890.0832 7107.1057 254443527 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 32369.3405 6175.1131 254443866 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6828.0707 2306.2613 4592.1474 3705.7498 17025.2195 94838.3316 6072.1411 3865.8464 2300.8018 2300.8018 2786.5497 6548.8525 6344.6767 5301.4412 8169.1063 2360.6066 3571.116 7826.1649 2436.5698 9894.9511 8539.1548 4088.652 9551.1641 4105.0529 2950.541 9648.4068 323472777 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3658.737 2535.3327 2554.0746 9543.8182 3593.0879 78962.5864 4140.9861 5843.0812 5707.8612 3587.4847 6200.3585 2185.0281 2168.6561 7879.4811 9388.3922 3843.3982 6688.3442 2918.7623 2750.2195 3265.4699 3093.4281 15594.5381 149926107 phn Organic Remediation Herbicides related compound NA Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 1664642.899 15043.632 8534.7169 127516.0278 3428.5066 16366.2011 16366.2011 7631.8017 4471.7196 5126.6747 2560.7119 5823.5393 327377055 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 9785.8439 162282262 tktA Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4486.2917 5011.8298 83225.7512 5597.3033 5597.3033 13262.7278 6843.4548 2228.2155 3032.4245 237858257 GAPDH_Parabasalia Other Phylogenetic NA Foaina nana superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Foaina; 8886.734 6876.1559 2399.9961 385888895 dsra Sulfur sulfite reduction NA Desulfotomaculum sp. Eth-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 33231.1711 29444.9352 3300.923 5655.2588 5655.2588 3632.3191 8539.8924 5416.0106 4555.6958 15653.1715 4391.5985 3809.5027 7344.5524 5031.2794 302346920 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 9533.1044 3131.1294 7874.8103 4301.6704 6523.0899 12690.866 7326.8466 6055.2959 2010.1454 4000.9584 113724267 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 4918.3035 3340.5291 3467.2252 10018.0294 9567.4577 16027.3699 4161.6527 91748.6892 4324.5208 4503.2728 33403.4146 33403.4146 9358.0818 6384.9863 14924.636 8530.4961 33538.9308 4876.7853 7617.5599 7325.4616 4462.9415 23354.6941 11469.207 6070.7152 1753.1238 4108.4936 5395.3684 6260.7076 8534.9583 255040402 APS_AprB Sulfur adenylylsulfate reductase NA Desulfopila aestuarii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfopila; 4320.7515 13680.746 8046.6679 2894.4379 3256.114 5223.835 5053.7159 71198.287 6614.4617 5962.7927 7682.7041 5327.6009 5327.6009 3159.6425 7679.9757 3900.7859 9082.6967 4298.8719 2295.5632 3918.0881 6669.6809 5765.7985 17072.521 6316.0358 9002.6995 3254.6084 4596.8662 3793.782 6050.1236 220935284 arylest Organic Remediation Aromatics Other aromatics Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 3923.2294 12400.1854 2652.4303 56696593 urec Nitrogen Ammonification NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 10056.0209 2366.1933 2244.1727 4245.6927 4245.6927 4519.7886 4932.0991 3038.1192 75676876 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 9568.8361 5918.0381 6050.6966 5972.5048 5972.5048 4787.1361 2805.108 7602.9971 11415.4821 12626.2723 2522.6039 4432.4358 4636.7832 3030.2069 10448.537 134093858 B_lactamase_A Virulence Antibiotic resistance Degradation Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 39140.8928 3849.1526 23912.6666 11580.9859 5300.2935 4012.8656 5808.5976 6183.2261 2601.1167 3585.8119 402502056 dehh109 Organic Remediation Chlorinated solvents NA Rhodovulum sp. PH10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodovulum; 61271.2866 2909.622 2909.622 4204.6262 2305.3341 1810.9842 77390477 arsc Metal Homeostasis Arsenic Detoxification Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 9450.5567 10393.932 57952.3902 3832.79 30729.1965 4275.2503 2356.1183 2356.1183 5807.6126 2497.1368 116619393 hbh Organic Remediation Aromatics BTEX and related aromatics Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 10740.19545 38198.6306 20544.829 108636.1509 48893.9671 19340.2192 30758.264 2246113.5743 129934.5488 35910.94935 6969.688 22366.9474 27789.64105 17608.1815 19102.8352 17769.8162 47528.5342 11253.34635 15083.9606 20433.18665 15032.72625 59800364 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 5947.1419 67341.3355 15381.7478 5214.2482 5318.1507 6512.6998 4244.6029 181860.1918 7508.2607 12774.312 38807.2255 12186.0868 12186.0868 4291.6236 8465.2847 8384.5826 8542.1359 13619.989 5343.7648 12138.74 4428.1499 14909.587 12375.566 15718.7075 4214.1177 4785.043 8345.4359 2616.9974 6475.0668 156975005 nrfa Nitrogen Dissimilatory N reduction NA Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 4564.8492 68241079 ppx Phosphorus Polyphosphate degradation NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 5772.7225 74553.5171 6205.5324 390451928 phn Organic Remediation Herbicides related compound NA Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 4906.6803 4314.6059 3901.0248 1273734.8836 2571.0865 5668.8594 2838.9118 3114.7391 2930.3627 6448.7981 157011604 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 6097.1039 12669.51 2195.6282 2956.2017 65093.3263 4052.9874 4457.22 11418.5524 5413.5714 5413.5714 7771.9797 6099.7923 2131.2742 7665.3444 5287.156 4976.501 3358.1452 3367.9586 3414.1894 357225632 alkb Organic Remediation Other Hydrocarbons NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 7379.9377 35851.7571 8079.799 8350.9655 4155.0494 2942.0735 2942.0735 8197.3245 5399.9488 5630.44 3486.2813 116700521 dsrB Sulfur sulfite reduction NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 44184.2585 60819.7837 38343.9305 99209.05055 198400355 bphd Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli LA-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella;species:Dyella ginsengisoli; 7051.4141 9493.6124 2913.785 3305.5011 2194.5932 2845.7116 98701.4484 6765.7776 4277.6749 4615.3922 2829.0772 6068.0074 5846.8102 4747.6022 5133.4626 2134.3714 3533.4115 11340.5025 2196.1627 10271.5286 5692.567 6955.0865 2599.1626 4276.7638 4192.6956 4683.6842 313683578 arsc Metal Homeostasis Arsenic Detoxification Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 11516.8686 9614.036 308737189 narg Nitrogen Denitrification NA uncultured prokaryote 5495.6873 15255.15 2528.1522 2454.4589 4601.3397 6988.9947 4875.1343 91177.4479 5065.4185 6595.3499 11374.0725 4061.9904 4061.9904 4002.7867 12437.3726 10258.5159 10997.9317 7855.008 6233.7312 3543.9692 8234.1161 8414.0625 5718.1377 18686.6747 8014.2486 12863.9616 2935.6739 5199.9212 6657.3296 2742.9747 13544.4585 145595773 endochitinase Carbon Cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 77051.9849 3163.1156 11726.8821 4631.4544 4631.4544 12853.0672 5164.7575 7754.2125 56566214 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 31615.9108 40420.6238 5745.8158 2914.3042 4869.3185 4869.3185 3359.9276 8624.2908 27433.7035 17260.8834 14360.1093 6319.1902 2379.548 7633.3475 4645.2272 6659.4219 3611.1446 2796.5454 9717.9529 328523848 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 6621.2306 2159.8229 6479.3891 9082.7682 4872.1032 4964.4154 3455.9221 4073.3117 4973.1935 3436.1024 3436.1024 4236.4903 3252.7036 10244.6247 12668.9406 4240.2347 4214.5639 5306.7336 2725.4677 7447.768 219965622 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5514.179 372267730 chitinase Carbon Cycling Carbon degradation Chitin Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 313779.6349 125280.1907 3675.4347 4017.8524 8091.2323 4226.3537 134900.9747 5746.7597 3968.8615 8250.2333 3301.7329 3301.7329 31814.6887 18860.9718 4272.3507 17591.8269 13494.5543 10867.7397 6322.4066 5626.4128 11665.9523 8417.3666 9348.3546 7427.7744 17327.8536 2841.4052 126460053 dsra Sulfur sulfite reduction NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 4562.5228 9735.8211 2879.6892 3565.5288 4458.9555 4027.5671 2924.8475 101213.8563 5755.9773 5020.3907 2666.3795 2666.3795 3172.0777 12318.324 5660.8162 6173.9528 13177.1441 6634.7119 2386.3275 3378.7526 9710.9401 5385.8211 13496.5411 8496.3151 8139.8248 3512.721 5031.2131 4083.6548 7778.733 206679504 ppx Phosphorus Polyphosphate degradation NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 557196.968 4823.5001 2761.9744 19030.3184 110281180 endoglucanase Carbon Cycling Carbon degradation Cellulose Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 5493.2605 3490.6141 2304.3651 2304.3651 3649.7366 5640.1295 6332.8656 2011.8538 9159.4661 6630.4223 2279.9267 350532589 pula Carbon Cycling Carbon degradation Starch Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 6045.6483 2376.539 5213.5876 5883.2271 19178.0448 10071.8726 330375554 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3902.9182 8239.8528 55313.4284 4264.3977 3728.2134 5893.4988 4681.3208 2314.7582 2266.0728 4919.2636 2276.3305 4710.6509 383777090 bphc Organic Remediation Aromatics Polycyclic aromatics Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 4328.7748 28908.9319 4000.7391 4087.09 3820.3801 7589.58 9361.2515 4382.4093 3200.5279 2594.9175 353549075 tktA Carbon Cycling Carbon fixation Calvin cycle Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 5195.4886 332638276 terc Metal Homeostasis Tellurium Detoxification Weissella cibaria KACC 11862 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella cibaria; 7621.2109 14210.5132 4058.5486 2901.276 2370.8195 63440.5123 3918.3202 7608.1864 5313.7438 2567.3614 2942.7366 9277.083 2949.9739 9205.3431 6156.8829 6372.2101 3693.6394 3680.1708 7564.3232 2837.1286 18034344 dsrB Sulfur sulfite reduction NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 4464.6966 6996.0951 322380154 icd Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter suis HS5 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter suis; 6300.0415 2187.3842 52189.7134 3553.0563 5233.9277 9946.8412 2614.02 292560775 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5278.4574 13077.9152 8191.3051 3577.8693 81206.4258 4570.0237 8159.8594 5765.8601 3528.8313 3528.8313 6127.7147 4147.7363 3887.9806 6995.0857 3662.7085 4476.8507 7331.4253 6104.7322 6050.3848 2447.6113 2684.2026 328879280 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11362.8272 7604.1961 220708114 bphF1 Organic Remediation Aromatics Polycyclic aromatics Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 27968.3138 7103.9059 3786.5986 3293.8844 3293.8844 5108.8582 4729.2162 3099.1831 2116.1171 2888.5439 2790.8751 2373.1205 116804596 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 20579.4232 4408.2834 5316.5518 6180.0358 3592.4206 19964.5362 11051.1532 4168.3558 4233.5544 4233.5544 3981.4277 5480.3447 4378.8249 2518.6275 8237.3736 5374.9054 2147.6065 4412.8505 5495.3808 1972.4539 2973.5164 3221.9581 291613349 nifh Nitrogen Nitrogen fixation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 4355.5489 6218.1387 2405.4198 1956.1272 5092.9779 2714.5608 5347.0296 3705.6082 3755.2235 2041.2243 7819.3336 2139.0404 3823.9366 4881.4647 2502.041 2492.4531 2108.0922 5459.1904 295440819 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4255.6714 7054.0171 3253.3056 4097.0645 4288.5337 10826.0265 11821.6111 4118.1072 55002.357 8158.8553 12035.3857 5561.4782 5561.4782 3688.1887 5846.9427 11996.1882 5438.7797 2766.8549 3551.2033 6782.0676 10247.0052 10341.6527 32795.462 8958.5566 4167.8085 10176.3233 8338.3658 12933.7416 86557139 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6220.7877 43462.5423 310891 gdh Nitrogen Ammonification NA Thermococcus litoralis superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 5733.3319 2668406 cox1_Viridiplantae Other Phylogenetic NA Hydrodictyon reticulatum superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Sphaeropleales;family:Hydrodictyaceae;genus:Hydrodictyon; 9494.6565 10503.8229 5693.3114 7415.1366 2194.9649 5477.7724 3284.2774 115345.0653 6497.0777 6016.802 4994.6987 2978.2326 2978.2326 3721.9222 13104.2864 9181.3898 5719.6511 22580.9171 6116.7652 3686.0195 31202.7929 6567.6557 11728.163 8719.7343 8518.5362 4860.1474 4732.3426 3759.2458 3423.5337 5920.5424 327462582 norb Nitrogen Denitrification NA Neisseria bacilliformis ATCC BAA-1200 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria bacilliformis; 4050.9426 3014.9809 2436.1346 55289.0181 4343.3714 3988.8893 2114.8024 8762.0913 2067.1432 2405.6285 269122283 fosb Virulence Antibiotic resistance Degradation Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 5955.0702 3572.8134 11374.6505 2120.4876 3841.7418 21920.198 123205.3993 4304.0736 2263.7038 2263.7038 16178.7166 5485.3853 5640.7244 6233.926 3730.9476 3720.2925 6335.6541 7131.1405 654795.9249 10841.3232 2101.8496 4265.7956 7271.4399 2725.6192 4332.4057 109452527 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4136.0087 4534.8439 3652.5442 5283.0354 3778.0201 6015.5105 2394.0223 1593.3114 2706.7456 1941.7595 6100.6527 108463501 nbac Organic Remediation Aromatics Nitoaromatics Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 5438.8496 9051.6014 2675.3418 61833.4178 6232.8123 3777.9256 3777.9256 3553.5742 8490.0355 2164.4423 9972.3758 3696.9725 6885.2715 1811.7167 3033.5732 3470.8834 375077524 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5026.5512 15802.0817 2569.6928 4904.2505 14256.5357 2408.8186 2408.8186 4693.0547 9852.4518 44025.2328 5136.7512 10381.7029 3814.3809 4459.1272 7560.9907 224955417 ppx Phosphorus Polyphosphate degradation NA Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 5078.4204 6765.2158 160917831 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4280.2298 28389.4921 28244.7455 17262.1465 4394.7461 6560.9608 5379.4161 2078.5483 2078.5483 2708.5108 7724.7101 16643.5245 13344.5487 6542.4647 13680.0574 3628.2766 3186.977 22605.4715 388051842 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 75712 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 5151.2396 2608.9524 2608.9524 14423343 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia sp. DBT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8846.8623 9607.7445 9015.0228 6887.4527 1771.1676 65429.7703 315447367 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 8573.1224 3281.3568 3873.588 5004.3486 1681.7655 2610.6244 5741.8546 149811539 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4082.6574 5559.5219 3390.8781 3448.0236 4025.6583 2379.9525 134282.7652 6322.6295 6939.1754 11478.0996 2285.0811 2590.175 17912.6453 6357.1705 4667.3247 3242.2442 3162.6727 3869.2146 242132240 RgaE Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 6944.5186 7658.7226 2129.5287 3850.1663 2027.1775 2501.8826 1949.8403 257456646 cda Carbon Cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 5855.9016 13771.6904 4275.1767 63094.8642 2567.6223 2567.6223 6987.838 5665.767 2975.8823 2705.9211 5322.6837 5429.0209 2934.5417 2562.4749 9611.8267 285019727 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 5940.0676 19444.7546 392420744 nitro Organic Remediation Others NA Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 5143.6659 2022.3102 135249.9434 3420.9977 2428.7447 5865.8497 1845.5213 365418364 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 14212.4546 2396.055 3682.5524 2287.4357 6203.2012 10079.6468 6944.5885 66526.3579 5260.1441 5260.1441 7550.6273 7914.0411 4800.4818 9946.7064 7912.1716 4564.5041 4926.8699 3444.9602 8707.9527 2758.1029 11198.431 8817.0214 11389.0843 2983.7587 7561.1385 52564.0763 2808.4109 9275.0594 329747026 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 394425.6486 6913.4357 4845.1799 2991.5011 3870.2968 8229.4753 3487.1881 113928.0023 5941.7842 6397.1511 23345.428 23345.428 2777.9152 9098.771 5893.1639 4731.4452 4853.8541 4150.5241 2513.0782 6558.4862 14166.8034 2508.2959 14934.1874 9146.2823 10228.9089 3724.3469 4740.0281 8045.117 3454.1027 4880.9982 365090536 linb Organic Remediation Pesticides related compound NA Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 14689.1609 26101.7387 2876.732 11586.1063 3086.4087 4290.1189 7311.972 6163.3475 4860.6519 3373.7496 3373.7496 2664.5951 8057.1143 3237.8531 5546.2192 8904.608 2396.6493 8324.1944 7030.2852 10958.8769 3463.5751 10111.1565 3095.7571 2537.8335 3843.0347 2065.9927 18469.2727 199597095 terc Metal Homeostasis Tellurium Detoxification Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 6419.9136 3072.1669 6921.5873 4120.2015 5268.8024 4693.049 93346.0671 5206.5991 8762.5648 4446.463 2858.9549 2858.9549 3198.6769 8478.2174 5551.5189 4512.1626 5146.758 4549.1803 2658.7464 6944.9788 2454.1829 5792.0515 7368.9693 3351.751 3737.9001 4298.5071 6078.7425 343505072 Sir Sulfur sulfite reduction NA Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 6690.2291 5873.0206 7921.6873 4986.1053 309308272 phospholipase_B_fungi virulence degradation NA Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 9819.7279 2952.9537 4881.65 260865031 terc Metal Homeostasis Tellurium Detoxification Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 6674.8553 71370.6416 6728.2985 3057.7099 157285668 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5419.7938 14960.1623 6291.0505 2243.5564 2243.5564 4613.3338 3939.5674 5091.4223 17096.2816 297210349 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4474.1623 21651.3757 329074.5303 12356.2241 3945.2894 336435337 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5129.8726 180824.4899 5718.324 4593.6011 2419.1973 5729.4835 2433.7051 6665.6067 315278187 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4733.1442 12394.5303 7625.0728 3758.8762 2376.8909 2528.2486 3221.237 4928.9894 2537.6802 111385.5686 3981.0154 4655.3831 29953.9075 2133.2098 2133.2098 2967.9719 10557.136 6535.5569 5582.7231 2259.2846 2518.493 7172.3048 2943.6201 12156.4691 7811.4434 6120.9703 4034.0802 4098.777 3119.7026 6548.2093 254044259 amyA Carbon Cycling Carbon degradation Starch Lactobacillus plantarum JDM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 4938.6627 4077.5843 119489994 nirk Nitrogen Denitrification NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4380.1284 2879.1563 5051.9725 392844267 badh Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4051.1682 5030.1609 74693.4788 8391.5539 2517.1584 8401.154 4957.4039 5435.4756 5246.2801 83943402 mer Metal Homeostasis Mercury Detoxification Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 4936.8829 10351.9003 2187.6739 2187.6739 6115.9017 10796.0732 9075.2516 325914712 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 6289.1191 7815.1741 71260.1629 379774.483 6833.236 22875.094 121712204 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5992.8006 17847.1875 10478.8419 1871.5175 128725.7574 33228.0362 5208.4618 18384.5451 174423.3343 4033.5303 5518.4681 5796.3721 3824.6624 2152.2828 87134462 xyla Carbon Cycling Carbon degradation Hemicellulose Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 5452.788 8418.2983 4694.7991 6417.2545 4761.4106 7026.2261 5459.2323 2542.9993 2459.9407 400536703 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 7588.9719 7655.7844 6123.6892 3628.6031 3198.5779 3016.4987 87537.0172 4051.652 10011.6363 4452.5466 4452.5466 7312.6143 2970.9525 5630.4799 5557.0999 7173.5639 2259.3691 330960943 cysI Sulfur Other NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 12299.1027 10939.6453 10799.9275 3530.8753 42319.0064 10524.2602 29198.6491 2078.8336 1668.3075 9224.6966 5379.9223 238724064 endoglucanase Carbon Cycling Carbon degradation Cellulose Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 14790.2803 2751.4414 4420.4841 4724.8735 3593.4491 3099.5681 8014.5696 5618.7069 3363.0235 2753.3319 2449.682 9030.2075 4373.5924 5369.112 1905.4008 2609.5451 4247.8668 5611.9405 262206499 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 4494.0015 15196.1948 5996.2514 3648.5881 101549.0495 3739.5963 5103.5601 10407.2529 3800.1301 3800.1301 8054.6235 5233.787 3090.468 7892.1074 9205.8686 5357.2678 9184.1594 2384.5535 3421.5969 3384.7689 2494.8056 148474786 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 19135.3224 2303.6144 3355.9655 2413.3111 73701.924 2229.5468 9598.5303 11244.5395 4104.413 40253089 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 47674.0535 75910812 amyA Carbon Cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6217.2543 193244789 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5660.2165 8501.1517 4267.7153 3747.7775 114138.883 5660.5675 4538.1766 3136.8965 3136.8965 16579.1753 6488.6986 6200.0508 5120.8106 7422.9197 2617.7009 3316.3818 6755.6008 12990.5546 35999.5682 6161.1771 7396.5936 3345.6666 2979.015 4073.2241 4871.6072 6348.4085 333791873 pgk Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 4741.59 3252.2226 3438.448 3710.24 105134.5205 6227.2201 4415.4192 6058.3049 2507.6938 9416.5001 4752.6359 5692.5777 2428.3163 4583.0312 3953.535 3195.625 4828.8972 311278268 cysI Sulfur Other NA Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 8259.9573 4038.1882 6495.3243 3701.7982 59669.5016 9739.1475 9739.1475 7913.8863 5076.5173 2294.4305 293613862 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 9219.6381 56180234 arsc Metal Homeostasis Arsenic Detoxification Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 4478.4513 51198.6591 3754.3293 3340.0709 28030.4179 4962.1942 62003569 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4959.4063 4480.837 2435.8864 4618.8416 3756.655 2461.5311 62352.9361 4971.6199 4075.8993 1998.735 1998.735 2874.9396 8812.0184 5320.0847 4043.5208 6701.4751 5119.2303 2641.6071 2973.1602 7087.0873 2905.8219 11908.8656 7321.6154 2665.8552 3486.3426 4424.2041 3051.6692 7760.1544 325301860 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4738.5915 12688.9108 3029.0892 6643.2355 66291.8066 5913.4048 4798.4564 4246.3053 3207.5825 3207.5825 4108.1351 2991.4795 6699.5485 1673.7811 301318941 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Olsenella uli DSM 7084 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella uli; 299871.4649 1993.7213 14755.4789 393792763 amyA Carbon Cycling Carbon degradation Starch Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 5487.995 3470.8779 3273.3879 3074.6989 4531.1528 2377.8862 2124.5343 2693.5722 309396384 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4363.0046 2690.4802 3411.1578 240952.887 4917.1446 8717.9133 2382.919 2382.919 3319.7564 14831.1646 3977.0394 4348.0581 5514.25 3783.808 6751.1832 2510.9489 7969.2557 2675.18 6179.4772 6132.6703 13488355 APS_AprB Sulfur adenylylsulfate reductase NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 10401.8997 25031.91 10739.0821 7688.6678 2214.0167 3970.1051 15572.712 3072.2937 7600.0261 2972.8952 2972.8952 8745.5772 10158.9809 6130.3995 2652.4251 12397.0716 9566.1831 4997.2637 9655.9618 2736.8744 23998.5309 3644.7871 2609.6211 217977375 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 5358.8817 6844.0651 4635.3321 10516.6387 7795.8157 16993.7298 9393.2385 2922.0906 2506.9759 281400020 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 4833.3192 3733.5269 4455.7428 2891.0255 6925.8895 4494.2773 2956.9424 103009.0069 4065.4406 8517.4945 2804.7638 2804.7638 3535.365 9435.3908 6844.7017 6026.0147 5665.5434 7412.8763 3239.5295 2479.1145 2122.4883 22837.3721 7220.3407 2109.7649 8634.8222 3768.9043 6388.1361 171058392 mer Metal Homeostasis Mercury Detoxification Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 6950.8416 315606823 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 10223.0757 1996.2266 20620.3909 339452203 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Leuconostoc lactis KCTC 3528 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 4890.5714 34585.0899 2268.1007 8195.0349 40745.4453 25690.0763 261213046 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 49518.2852 10323.1307 2772.8174 7937.5781 2839.6336 6214.3752 150036078 soxY Sulfur Sulfur Oxidation NA Allochromatium minutissimum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 8889.4995 10773.9442 9717.5441 56421757 arsc Metal Homeostasis Arsenic Detoxification Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 12700.3183 2216.014 189341599 rubisco Carbon Cycling Carbon fixation Calvin cycle Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 4759.9694 53866.4984 5968.7329 63575.0628 6158.7985 5518.1696 3477.254 3477.254 9731.3359 17940.9155 12478.8764 14088.1191 12237.3221 6975.2603 7547.5178 2291.9459 3141.9774 6092.7497 391879758 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 7237.9804 24413.999 5668.3096 4109.6873 3817.0975 3575.0255 5449.0244 3352.1582 5727.106 3105.8627 3105.8627 2920.8444 5914.5328 3742.989 4353.2731 5092.8583 8172.7194 4594.548 7383.6335 2019.6022 2855.8402 4066.9539 4096.1417 351594438 arsc Metal Homeostasis Arsenic Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 4043.0673 7328.6679 4244.5488 4658.368 4883.2456 359400966 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 4303.6652 7088.5753 6232.1117 5157.053 3964.8192 2638.0341 2638.0341 6366.8588 3281.6504 2199.5041 5394.5752 2043.5552 10237.18 8223.473 10665.6159 3328.9033 3279.677 3088.429 2223.293 391223154 amyA Carbon Cycling Carbon degradation Starch Opitutaceae bacterium TAV1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 4731.5651 8310.5681 3976.1918 5675.3395 302548528 pcpe Organic Remediation Herbicides related compound NA Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 5274.0049 8843.2486 4391.0816 2369.2881 3859.2536 2785.1681 153391.7725 7737.6435 13082.0323 13082.0323 7340.3086 5722.3194 3808.927 3938.7641 2040.8989 2566.4219 6570.1282 3791.991 46749.953 5470.8787 8840.7805 2384.8123 3324.6628 8861.1051 2986.5731 5357.3902 407696161 arylest Organic Remediation Aromatics Other aromatics Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 7507.7304 3127.173 3047.9773 4723.64 2412.1715 88476.8544 4519.6764 4320.9283 2832.5169 2832.5169 8321.8293 6203.2337 4567.8805 6707.9173 6924.8022 2923.7149 3166.9013 7624.8209 2556.0732 9669.0604 6277.4604 6524.4281 3626.7374 4408.9791 4068.2034 11376.1114 340048858 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Vibrio cholerae HE48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 7534.409 253573651 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 5076.0042 18376.549 5383.0183 5182.7118 5429.8124 72242.0018 3913.6071 4864.2497 2600.4553 2600.4553 3137.2608 6383.5211 4397.7559 3180.3932 11903.375 2594.9967 11079.3632 8475.4048 7459.2487 4560.5844 5529.1157 6857.2237 144425 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 4005.2612 6247.9159 7909.4175 4216.8294 147468.839 3923.6272 3485.7152 4996.4606 2327.5911 2327.5911 3193.1388 3172.6856 2269.7628 16161.3066 2616.5439 3390.2652 8190.1624 357203816 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 6947.1142 33036.0002 10984.3886 4710.6094 332533435 pme Carbon Cycling Carbon degradation Pectin Pseudoalteromonas haloplanktis ANT/505 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 5094.8693 400755892 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 38831.2946 3545.0208 218715462 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 28239.4355 9388.5987 4627.8785 1783.0045 192359341 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 4833.0662 5061.8278 4325.2997 3038.2597 3114.1269 3946.012 3851.4307 7875.1203 6873.5919 5651.8779 2650.0383 9009.7422 3977.4214 6189.7804 2671.656 3744.8498 2978.8314 337264791 mer Metal Homeostasis Mercury Detoxification Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 8510.996 10026.4401 2359.4449 2568.1427 4056.6908 3790.7211 16811.584 5023.5827 13234.3341 13234.3341 2877.3576 6624.8689 5334.5042 8601.3536 7459.8321 5428.9229 4359.0462 8191.771 78223332 pchcf Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 4242.7307 68492.6837 6746.9071 84206.8779 383816557 terc Metal Homeostasis Tellurium Detoxification Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 21380.4937 349792142 arsc Metal Homeostasis Arsenic Detoxification Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 4428.6849 13717.2263 7976.5503 3176.7621 5284.119 2365.0867 4465.3213 5131.6462 8535.2582 4736.1001 5284.0526 9474.6279 4561.058 6489.0153 4910.5888 13315.0152 4650.013 4986.2573 13231.1147 4384.5777 14777.2171 3101.4117 7801.2878 299132079 tktA Carbon Cycling Carbon fixation Calvin cycle Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 4852.3751 3936.2148 13073.9372 139590.6829 5257.9744 4303.2152 2170.5005 2170.5005 7505.211 5235.7889 6617.326 7407.1021 10255.2955 6106.7091 3083.1242 3542.3622 3056.9638 4935.9587 218666451 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 13902.5339 9631.1257 3865.6043 4343.2559 2420.1517 3527.0618 4440.569 76860.277 7981.5888 4099.4993 2280.335 2280.335 3417.9453 6929.5321 3886.423 2308.1344 9140.4108 3629.2282 9730.3166 4117.383 9727.4494 2474.0002 5341.177 3134.8017 3500.4488 5370.5321 338171279 badh Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 12160.4465 2936.1573 2877.3409 3574.0624 3876.3675 4314.8123 4314.8123 6246.571 3710.9005 4943.8158 2911.1332 4713.2674 2424.3137 2931.5743 2395.949 294992293 endochitinase Carbon Cycling Carbon degradation Chitin Hypocrea pilulifera superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 84866.5139 7744.0188 3274.3666 3516.5903 3141.8258 5162.6808 4195.2276 2264.7223 2264.7223 3279.6179 12310.6994 5101.623 5038.4083 2877.221 3234.0945 6157.1852 20678.2063 5569.188 7195.0907 5784.1091 7464.4703 2188.5549 10648.2814 33520860 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4627.9794 12764.5093 5475.5049 14922.9391 23076.9504 10503.8058 5739.5805 5198.5822 313440905 chitinase Carbon Cycling Carbon degradation Chitin Veillonella sp. oral taxon 158 str. F0412 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella sp. oral taxon 158; 110409.5245 154240552 mcra Carbon Cycling Methane Methanogenesis Methanosalsum zhilinae superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosalsum; 5478.4052 339289478 chitinase Carbon Cycling Carbon degradation Chitin Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 20750.9231 154174627 dmsa Organic Remediation Others NA Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 4862.8481 153059.6929 3113.673 3113.673 18270.6135 227483187 tktA Carbon Cycling Carbon fixation Calvin cycle Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 16157.2094 2963.2288 4753.7352 2591.259 2999.3693 2971.81 6402.42 3850.4511 17606.156 2112.1478 18133.7337 3679.5653 6256.016 2425.2577 8433.8222 5548.3598 2361.4806 134100912 one_ring_23diox Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 5995.9047 2480.2418 4436.2888 8712.8681 4637.0851 2382.5414 2382.5414 3222.6803 6457.1743 14711.2639 11109.9719 2750.599 2434.3869 5542.1082 162283897 arsc Metal Homeostasis Arsenic Detoxification Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 11076.5163 365418363 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11960.5766 20744.6794 6255.4207 4442.6298 18540.3594 6918.5004 4860.8199 2806.4353 126931.1845 8074.0731 7795.3443 13068.8104 5844.6837 5844.6837 55424.2658 11695.9307 8576.8885 96374.0587 4592.2069 6103.7572 2835.0573 4577.1767 18259.2289 5070.5358 125204.1262 9556.372 11516.9941 6292.6917 7988.8449 36459.2331 4456.8419 48919.9324 209486804 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 358698.0969 74380.0356 22697.5859 6755.9041 3167.3265 4022.9444 4035.9804 5469.8801 8183.8439 7060.5079 5482.8233 2559.7021 54061.1971 4388.3635 9662.544 2948.9196 2879.1662 237625001 catechol_b Organic Remediation Aromatics Other aromatics Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 12098.8627 12427.6079 5594.5317 10063.346 3871.5728 59926.7328 6666.1388 4570.797 2372.4125 2372.4125 5746.6679 4062.1807 12342.7971 4098.9217 2873.2174 2478.5326 6644.9144 2189.6361 8600.1109 4612.1932 7718.3933 2311.6882 3481.0779 2937.8499 171741858 mannanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 5228.5517 15368.3897 53044.7289 6718.0899 4635.2427 2089.7412 2369.2056 5922.2281 1635.3783 261371723 amyA Carbon Cycling Carbon degradation Starch Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 16358.9566 39293.3012 8264.312 4558.3086 4870.0622 4702.8684 58517.6091 7979.2105 6742.6898 5314.6409 12660.5054 12660.5054 4422.1876 8526.3338 10751.5995 5067.3631 7105.9984 4986.6294 6334.3052 20058.2291 73910.3706 18144.7256 15704.8914 9383.3252 3832.0166 13469.0394 9023.6602 3186.273 177843310 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10279.5684 39669.74 2712.5173 3698.9799 4572.94 6058.3421 6058.3421 3055.9155 10861.5597 6522.2239 4581.0007 6260.7155 11287.2445 4069.303 18120.2016 18805.1099 6965.5108 6844.9754 3722.8063 4368.3047 2536.3078 186660318 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 13706.7467 8739.7541 4125.5255 6845.7753 4160.6273 3971.9013 5167.719 6889.584 20674.795 4882.4362 7430.0865 116181558 endochitinase Carbon Cycling Carbon degradation Chitin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5093.5325 10339.475 4311.7595 4268.2714 14423.8739 4084.9015 3313570.1198 9513.2177 8294.1032 13248.9494 13248.9494 9758.0179 6671.8706 6384.0016 7153.7137 4734.8092 6976.4233 20606.3138 11748.4137 7579.2047 6858.7302 2286.3039 4304.6215 16396.0109 55379268 narb Nitrogen Assimilatory N reduction NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 9868.7508 5496.4126 5008.1604 3915.511 10487.8976 8737.2769 11933.9906 3193.3893 6331.8656 9671.4983 5226.2983 346226444 ara Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 3936.2427 3605.3654 6091.9808 54745.6505 3601.1121 3163.4535 5827.0715 4278.4915 2301.6265 4401.2859 5951.3947 1779.4077 3844.2537 4759.3683 348594870 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 6447.5665 3085.4788 3780.3762 3182.9256 90236.454 3397.178 20744.0549 2647.2725 2647.2725 6609.4135 5254.4961 5105.5435 4479.9984 7832.1879 2771.3116 2865.3599 4740.7285 196182586 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 20661.6826 8097.7514 6171.4979 4236.824 8859.8029 6170.7001 8717.5864 3194.2922 290520.0536 5761.967 11173.8202 11842.2169 7360.9233 7360.9233 2811.9249 6515.461 8793.3532 4199.7925 7668.1666 9927.315 12230.6344 6873.3087 14790.5303 7691.534 9267.6997 3871.0336 7979.94 5882.5661 2310.3196 171911815 urec Nitrogen Ammonification NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 4702.7683 2739.0786 4307.5406 2586.1547 226187891 pcag Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 38373.3944 2583.8543 4809.1094 6060.2737 3416.9678 4454.5436 6968.4934 3854.4918 12394.7753 5859.2401 213044.3799 44463.9314 12536.6738 3260.9725 2661.5684 5356.7575 229589758 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4041.4855 9171.4561 4166.9676 115433114 ppx Phosphorus Polyphosphate degradation NA Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7204.744 128294.3389 2825.7105 3048.0924 3048.0924 4717.2061 94957888 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5005.8979 3288.821 2633.997 374609902 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 3786.1179 11431.4797 4310.2593 2261.2792 3698.4095 4436.0359 2903.2985 128660.0971 6547.6868 6027.124 13312 4969.4961 4969.4961 4198.0503 10735.0426 6423.3897 6000.3245 20089.0467 8841.0545 4777.5688 4862.4142 7767.9048 5949.4753 15531.6906 7903.0972 9321.1446 4103.8714 5928.443 6002.4643 4068.5802 29448.721 343956046 nosz Nitrogen Denitrification NA Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 4054.3266 8996.9464 359361889 terc Metal Homeostasis Tellurium Detoxification Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 4647.832 14935.0149 2713.4894 8532.1928 4530.7368 4548.8744 7073.9465 7215.2242 5967.6783 6146.9663 2812.4479 7436.6868 2822.6368 11812.8441 8241.879 9925.6581 2673.9112 12810.3046 3913.6943 3019.9399 398104449 arylest Organic Remediation Aromatics Other aromatics Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 14571.9853 2480.3707 2686.0148 13057.4467 2929.2444 5755.3931 3235.1432 3920.0293 2143.3057 2143.3057 5603.2834 7422.1707 5968.6456 3936.2787 2104.2149 5508.3602 6106.1498 4915.4639 4079.7562 4776.3534 2705.2118 4692.8498 3191.7341 5782.9018 4613.0913 15076497 actin_Viridiplantae Other Phylogenetic NA Picochlorum maculatum superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;genus:Picochlorum; 8162.7261 15784.2366 50121040 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4882.4178 16597.1863 209959872 tehb Metal Homeostasis Tellurium Detoxification Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 7567.5613 2729.5937 3233.3521 5156.065 67922.6709 5240.7274 2259.344 2259.344 5409.4209 2690.9821 3753.1657 8186.5943 3356.4932 3389.0944 3192.9855 365856440 ophc Organic Remediation Aromatics Aromatic carboxylic acid Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4286.5596 21388.6252 6105.4789 4215.9452 4157.622 3697.537 87202.023 6128.5257 7446.1727 5858.5261 5858.5261 4232.8437 9669.1892 2016.5719 11317.2977 8503.1866 10466.5995 3028.8964 3065.9027 4331.9774 2013.5526 5146.909 210632294 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 9024.2157 21849.1338 3535.6117 14917.3813 5148.1558 5797.3208 183611.3473 15902.2869 12364.6704 15176.5885 12439.2218 12439.2218 7147.1243 4950.1128 5920.4847 4412.0461 12567.1117 2366.1963 9808.0726 6294.6562 6838.2945 2839.2161 3347.2236 4309.9369 194477282 terc Metal Homeostasis Tellurium Detoxification Paulinella chromatophora superkingdom:Eukaryota;order:Euglyphida;family:Paulinellidae;genus:Paulinella; 23355.2823 383649538 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 4881.4938 2346.2748 3034.4158 7956.6474 10250.6479 8525.7632 3012.3282 11288.4454 19919.0734 2492.0099 333602054 pula Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 315-A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 7441.0886 325539568 Sir Sulfur sulfite reduction NA Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 4131.6322 7330.933 5296.142 33901.9076 13967.447 110810227 Rubisco_Glau_Rhiz_Cryp Carbon Cycling Carbon fixation Calvin cycle Bigelowiella natans superkingdom:Eukaryota;genus:Bigelowiella; 7119.4369 5578703 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas xenophaga superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 4177.0994 2579.9504 2485.3925 6062.0923 6057.9253 4392.9882 4995.2092 2018.0621 5601.9191 226322636 nifh Nitrogen Nitrogen fixation NA Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 5742.8795 4107.7728 4001.6205 4611.1019 311742298 nira Nitrogen Assimilatory N reduction NA Aeromicrobium marinum DSM 15272 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Aeromicrobium;species:Aeromicrobium marinum; 7528.7204 3271.3438 19314.1788 4052.9349 6348.1344 6348.1344 4679.7181 6626.2938 5499.1599 4825.9671 3253.95 3428.4434 6299.3149 2855.4141 50978.9683 4923.8896 5635.3692 2036.6729 2859.3308 8248.3484 2730.3595 121296537 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Stenotrophomonas maltophilia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 4214.372 4641.3797 4919.2346 2354.0819 66647.4172 3417.86 6087.8513 3352.0658 5494.0064 2070.8013 385867022 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 8214.4863 2554.8506 2450.1005 4657.524 2715.9341 4543.5561 4998.1709 3632.92 6027.994 4388.1392 5870.9748 34124.5997 2317.2189 7149.9244 5181.0149 2834.0143 41241.2134 5190.2321 6203.7112 3773.7613 3987.7484 3917.766 3461.0924 4473.2496 227463451 endochitinase Carbon Cycling Carbon degradation Chitin Isaria fumosorosea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Isaria; 15507.2066 23428.1486 4858.4604 2763.4862 2453.4417 2878.4953 78368.9137 7340.1569 55456.4514 5996.8184 4736.5627 8465.2391 3832.1606 3832.1606 4362.1118 7854.2038 2544.9845 6648.0279 7769.8667 7045.0108 2204.8082 2595.0838 256723065 glucoamylase Carbon Cycling Carbon degradation Starch Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 10159.5537 167034310 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 5364.8601 44998.5783 15014.7482 2179.6244 2179.6244 7149.0902 4444.4384 5758.2245 1954.7015 187928407 pcag Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 5169.2796 2419.7897 3424.8979 11472.966 2799.5363 120327.3355 4258.0148 4527.1843 16366.5818 6394.4317 3005.1652 13206.0937 5778.3813 5260.6 3073.8593 3879.0078 2512.431 254271897 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 8402.1516 8194.133 8861.6157 7355.1996 18864.7397 32166.3092 8799.3384 5572.1013 4856.9543 78045925 hbh Organic Remediation Aromatics BTEX and related aromatics Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 6120.6656 65740.3144 4419.7554 173559.5307 7582.4907 3319.8639 8607.7273 1904.9722 3040.0364 297150490 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 9395.1812 3108.8693 7714.108 3467.8039 2892.3305 4303.9474 4774.0976 2398.9324 2511.8268 222152822 pula Carbon Cycling Carbon degradation Starch Streptococcus uberis 0140J superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus uberis; 6337.0242 33391357 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4645.973 12592.1162 2244.9684 2929.8089 19471.4143 3693.9963 11183.8533 11581.9453 70669.3982 5167.534 3591.2797 4471.2554 4297.3708 4297.3708 5943.4978 4278.2072 16509.6105 3547.2834 13093.0113 2285.6417 13152.998 6903.3331 9097.7769 2747.797 5348.1715 2155.8413 297585027 amyA Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 6665.1971 3984.1339 5970.184 6905.2107 1927.2994 2201.0129 294055149 amyA Carbon Cycling Carbon degradation Starch Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 81064.8478 10737.6834 5884.1173 3149.673 3149.673 28256.9266 10651.0403 4108.3323 3148.3668 5354.6862 5351.0267 139003174 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6135.4452 2515.1073 11982.6495 216609.3348 2004.4976 32493.4863 7669.3389 28974734 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6312.2267 390455099 terc Metal Homeostasis Tellurium Detoxification Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 20197.2357 16192.2186 9899.6028 3809.7356 3809.7356 6402.6953 7128.3401 8058.8314 5346.6155 7723.1466 5005.8871 7667.3477 2819.7297 2404.2343 2261.2749 291071684 bphb Organic Remediation Aromatics Polycyclic aromatics Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 4626.8646 209401710 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12509.9236 26259.0324 7945.3861 6206.096 3693.4957 71989.4117 3595.3283 3364.4465 3098.7303 3098.7303 6772.0111 8020.9675 5253.3835 7567.4239 2484.1324 13436.9895 5901.2471 6216.5611 3060.7773 5636.1436 3661.811 3278.6376 56475910 nirs Nitrogen Denitrification NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 39915.0894 2528.2878 4602.9947 3661.0105 10953.5968 4295.7138 9010.7888 3749.5954 3669.8198 2709.7032 2798.0265 3900.3931 2505.0554 29160305 exoglucanase Carbon Cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 5672.4412 2353.5389 2377.4533 4232.6705 70441.5174 61621.0242 4371.6883 7071.5319 5135.171 5151.9102 2035.1785 2453.1375 13447.6484 9915.0014 2828.5144 3207.374 4208.9071 18034265 aps_apra Sulfur adenylylsulfate reductase NA Desulfocapsa thiozymogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfocapsa; 12250.102 22831.8525 5809.664 2265.8243 65467.8797 4142.079 3887.7756 2130.7262 2130.7262 3311.2892 4106.9508 5204.7581 5905.2863 8162.1805 2645.0608 7986.5398 4559.0529 8774.9844 11053.2757 2722.6906 2654.7908 344200583 soxY Sulfur Sulfur Oxidation NA Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 5543.6024 21326.2817 8520.0805 3039.4634 4147.4249 4089.2645 5086.0758 12091.8827 12091.8827 2642.0695 6009.898 14859.615 3300.4237 9310.8717 2296.3807 9085.9006 10147.2522 7343.2798 3182.2694 2948.4534 2767.0934 14346.3212 302405491 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 7958.9835 15403.6746 2610.5154 3213.0838 4008.6608 4324.317 4266.2921 3161.1109 3161.1109 5388.4338 4844.9081 37997.5533 11001.9142 3748.7298 1912.2287 2845.9482 4110.2653 2419.2247 209521039 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4440.1568 20537.0384 6508.2855 5133.8956 3650.8426 4415.7303 5251.5946 88331.1276 6647.0096 4291.6592 8752.7028 4663.2868 4663.2868 6347.9818 7213.2924 5380.2787 9030.8745 5220.5022 9550.1188 12855.5249 7381.7649 8485.5004 9616.1938 4086.5122 8859.7087 192764282 nifh Nitrogen Nitrogen fixation NA uncultured archaeon superkingdom:Archaea; 4069.2338 2887.828 2786.4008 5538.1528 3660.9674 2951.9451 1969.241 3434.8905 4719.3614 1827.9225 89901479 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 7728.0004 42498.0488 2498.3302 9164.2898 36083.5504 27060.623 81167977 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 42795.9977 3706.0687 2081.7978 2707.283 2590.5109 4333.9312 359820213 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6766.9333 312194055 alginase Carbon Cycling Carbon degradation Alginate Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4995.6689 13023.6176 2581.94 2328.0991 2328.0991 2613.393 4705.4988 325677658 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruminococcus albus 8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 6961.7936 63256070 pcag Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 6487.6939 32107.0959 2343.5116 2321.996 3068.8849 62049.1237 3388.0444 3979.7476 4123.9373 3601.5461 6893.9308 5193.0532 6115.5223 2446.8452 3259.03 2453.6601 312869558 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus oris PB013-T2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 4540.0118 2042.5097 2042.5097 4420.2711 2026.7705 183581070 terc Metal Homeostasis Tellurium Detoxification Kocuria rhizophila DC2201 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Kocuria;species:Kocuria rhizophila; 5369.2978 4310.8063 3722.7418 7913.5262 4222.0012 5161.0236 28407.8452 26874.3612 11318.8787 5360.7962 3423.4004 4068.9684 4960.4411 1978.5611 4381.438 10544.6152 260415627 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 5968.2458 9658.3154 3836.8506 5342.6739 9985.5111 407899191 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4119.1595 15889.4494 11919.1029 2585.624 4649.3761 6578.2936 4427.3317 816967.5787 45482.0636 7875.8245 6596.3682 4503.0947 4503.0947 3200.4735 11796.9566 6688.4892 3945.9159 18901.3067 13555.9237 2639.5692 5626.041 12477.4742 2858.7615 16924.4777 19949.1168 12939.0378 3163.1267 10459.3632 8272.4199 3814.2055 8503.3867 13958044 nirs Nitrogen Denitrification NA Azospirillum lipoferum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7296.0157 2858.0375 58104.5388 19116.0201 5739.1448 2600.3853 2600.3853 5743.3796 6569.7379 2608.3525 5530.019 3305.9125 11003.1499 1516.7089 4020.917 2952.9037 88787339 nitrilase Organic Remediation Aromatics Other aromatics Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5825.0573 32285.3452 28581.8282 19699.7487 4199.9421 5177.5355 4911.5377 3352.466 76339.0221 6808.8966 7416.7876 7892.0844 6287.5612 6287.5612 5156.3686 22157.0748 10145.1377 4425.9105 30225.3424 4910.1621 3134.2039 5695.6023 28915.9129 3968.823 22759.5691 13650.2921 16967.0105 7992.4086 11414.3291 14640.9243 2466.3661 282935444 nirk Nitrogen Denitrification NA Fusarium lichenicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 4339.0086 22577.0398 85705618 mer Metal Homeostasis Mercury Detoxification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 8553.0159 2235.4676 154151018 dsra Sulfur sulfite reduction NA Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 7133.0249 2438.1646 2601.1545 3023.8825 4355.2962 3184.4606 57308.117 5895.6705 5029.2935 6145.4614 3181.6864 5880.7408 4846.47 4024.3143 2327.2046 5035.5967 2077.8169 7444.838 2347.7905 2978.4278 5789.7823 377551988 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 9378.2336 5927.211 3869.8778 245932.4651 3677.7888 6467.738 4210.1257 4210.1257 3830.7672 10804.6675 11472.0299 2897.1649 7864.5013 5785.3508 8925.1447 4882.3807 1766.5706 3768.8154 218171851 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7213.2607 4261.2815 5976.0452 5403.4536 378550924 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 5187.8225 4166.7441 4489.9594 4454.1566 31985.9359 4905.8031 5844.7216 5844.7216 10414.213 5510.7926 5165.1327 52261.3431 4392.5555 3018.3705 2601.6036 7149.5725 5215.9569 2859.0127 3447.7983 6647.0534 4095.6165 121711036 amyA Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6554.0612 29526.1076 88347.1805 12351.9508 159882155 ccl Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 8631.942 2285.1047 2940.0794 156036046 cutinase Carbon Cycling Carbon degradation Cutin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4610.0322 2885.8003 3900.5952 4541.098 7953.1708 4749.1496 2275.2234 8749.6728 4449.7786 3323.4822 14389.5656 315001616 aoxb Metal Homeostasis Arsenic Detoxification uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 10810.15 14453.8423 6228.9506 36490.54875 42523.81965 24182.60275 52176.1692 87281145 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4490.8377 5128.9277 1686.9601 2544.0219 316981088 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 4171.8941 4400.7268 4487.7764 3138.6478 13400.7825 380736901 ppx Phosphorus Polyphosphate degradation NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4987.6446 145236889 chna Organic Remediation Other Hydrocarbons NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 6870.313 5837.7182 732513 mnp Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 5063.2207 2138.971 23699.2871 7364.39 10013.3801 2795.367 5274.1702 3778.3939 4295.4092 5910.8114 7138.6323 5340.1275 1784.7596 9464.7277 3097.3458 2152.8278 39971943 phospholipase_B_fungi virulence degradation NA Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4441.2136 7922.9333 3032.735 21907.6266 3889.756 3889.756 3310.7369 6529.0907 4108.177 6381.7501 6915.6749 2188.8337 5491.4706 2398.3788 123390.78 6006.4114 219680166 rd Organic Remediation Chlorinated solvents NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 6099.8929 42839.2687 3028.2296 7440.54 49142.5318 27915.5549 5181.2117 353192812 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7880.6094 6750.4051 2702.0907 3291.7133 6167.4488 4296.6474 70609.7435 3689.3602 1890.2624 1890.2624 2647.062 8113.8576 6778.6854 2613.8673 24762.7045 2443.3325 2493.6437 2645.3836 16971.2708 2675.3853 8437.2147 225375867 amyA Carbon Cycling Carbon degradation Starch Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 6293.8069 8345.9893 83465.4442 4085.105 23636.3705 23636.3705 7685.4131 6211.832 10322.1467 4032.64 4988.7518 3216.0229 3001.6961 2835.2551 5741.8629 374321684 arylest Organic Remediation Aromatics Other aromatics Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4854.1127 11922.4461 4681.0733 170694927 mer Metal Homeostasis Mercury Detoxification Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 7339.8789 2540.1358 4785.3816 254465761 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 546504.4247 709259.7251 254516194 soxY Sulfur Sulfur Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 17014.3851 5546.585 290472011 catechol_b Organic Remediation Aromatics Other aromatics Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 1958527.4976 139658.2323 7648.0604 12511.9116 359396084 dehh109 Organic Remediation Chlorinated solvents NA Halomonas boliviensis LC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas boliviensis; 4606.8046 4058.7696 15194.179 5092.4716 3398.391 3398.391 5038.7856 2420.9057 4608.9886 63029733 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3833.2294 14743.3993 6327.3296 2052.2686 2423.1581 5542.4206 10897.4414 95044.3792 5133.6991 4838.2882 5577.472 3679.2515 3679.2515 2643.5731 8962.1018 3617.6718 3614.7904 5698.2893 4524.712 3700.0633 15922.8674 1984.41 9149.5771 7308.1537 2423.6021 3014.6092 4157.7939 2051.6702 9102.8998 198257234 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9476.5325 5366.8289 4191.04 119948713 inulinase Carbon Cycling Carbon degradation Inulin Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6139.5788 2250.4605 5682.1224 4798.8343 3380.4339 4329.6036 9607.448 2634.8112 2827.0047 7072.6346 2276.2282 5062.8908 7608.346 2880.6547 4274.3548 2609.1035 377563407 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 14798.3454 27382608 dehh Organic Remediation Chlorinated solvents NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 6591.6127 16767.1832 10256.5794 2379.8407 4919.6751 82136.6808 3810.7409 4418.7691 4135.7524 3986.1522 3986.1522 8623.5564 7129.9633 5685.782 2833.8557 10923.9752 23043.1657 10671.2849 10387.2338 3301.3344 3811.2105 2480.6221 359738907 chitinase Carbon Cycling Carbon degradation Chitin Saccharomonospora azurea SZMC 14600 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 194682.8811 9459.6812 3695.4815 3420.4009 1946.7078 1946.7078 2990.7469 5486.0539 4985.9178 3456.7239 6256.8639 2429.3702 11960.9629 3738.6872 6386.6131 2046.6951 3390.5137 4823.943 2007.5526 170113732 mnp Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 13236.0543 102201.8778 4758.6536 51091.3032 103644.1708 4796.1092 3733.8496 7689.3068 7219.3731 7219.3731 2814.4097 4399.5178 10956842 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5074.3452 309700160 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6298.0299 2258.7024 3828.1648 5855.7856 9921.8298 3516.6553 2229.4926 3051.7269 149144097 TIM Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5643.0386 20696.1215 6321.9913 5541.3183 10618.2114 6344.9676 6101.3594 3688.8206 2333.4482 126105543 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6582.7785 282570621 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 4513.7178 3129.3194 24531.8851 6294.7416 6294.7416 4993.2045 3627.1113 5014.1559 3429.3886 7206.9031 4432.2134 219981040 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 57803.0209 2337.3045 3169.2001 5368.8533 5368.8533 1905.1322 2055.684 10378.3676 345302844 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 667137.1111 2694.6481 12953.3945 7300.7102 3234.3753 118071251 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 5097.0819 19521.8115 10683.9336 3143.7329 3739.5025 75742.8883 30160.4099 5434.9058 6792.6693 4824.4345 4824.4345 10571.4731 5149.2259 5121.3638 9981.019 9473.0409 11960.98 7553.6038 2583.8532 2957.7214 4518.6324 16706.6663 33635806 tktA Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6115.825 13683.7624 4014.3497 5648.6745 12921.7085 9350.6523 11078.9477 69159479 nosz Nitrogen Denitrification NA Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 10658.2139 3016.6479 4966.3532 232777.845 17799.3908 6546.9506 32311.4938 8810.5651 2377.4216 5094.2689 259476462 amyA Carbon Cycling Carbon degradation Starch Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7836.7356 5002.6164 2374.1895 2716.5074 4420.616 4196.1544 2587.7253 2587.7253 3992.5831 3088.7219 5944.3129 4448.1085 6628.7251 3975.7128 3826.0583 93354129 chna Organic Remediation Other Hydrocarbons NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 8079.1946 6345.5299 32188205 nasa Nitrogen Assimilatory N reduction NA Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 145529.7133 263122.0927 463011.5813 15462.0577 220645.8597 26723.3229 56092.1963 22869.8893 381198.6861 68023.3167 89561.1551 54049.8726 31095.9325 31095.9325 52971.4079 108147.9461 146708.6053 5455.0664 5768.8439 3293.7188 58087.7436 299604.5088 30678.1775 394686.2895 144244.9313 242987.9418 82144.6647 70343.5718 116001.3214 30030.8527 5310.0341 119503920 dmdA Sulfur DMSP degradation NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7127.6852 332372360 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4627.6339 4145.6472 1932.1814 2313.567 158333751 ppx Phosphorus Polyphosphate degradation NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 4340.2418 207115.8952 2829.0911 7311.1218 5080.357 2457.8028 2745.8914 5011.0845 262079184 amyA Carbon Cycling Carbon degradation Starch Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Haliangiaceae;genus:Haliangium;species:Haliangium ochraceum; 5779.7195 11051.8323 2254.8771 2706.1603 73836.6429 3022.7485 5090.6599 3476.6185 3476.6185 6251.47 4735.3779 3505.7625 94550563 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 4241.5893 19920.4799 4870.6847 2012.2291 3480.6957 2204.8336 2204.8336 7727.6854 8235.837 13051.6144 3762.3257 6003.2659 1825.2339 222447906 cysI Sulfur Other NA Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 5121.3685 2438.7096 2438.7096 4129.0262 5191.1413 3036.4232 212707610 ppk Phosphorus Polyphosphate synthesis NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 5056.1441 6689.5825 11388.7891 2399.0546 2642.0678 38953.013 3220.8279 37791153 phenol_oxidase Carbon Cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 4299.5562 3268.8816 3167.0522 2515.6522 2851.2313 3432.0104 119864997 mer Metal Homeostasis Mercury Detoxification Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 3547.5432 4291.2404 399229628 one_ring_12diox Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 7831.9415 348975.588 18070.9591 11518.5248 3403.0866 93569.3225 5871.2861 2885.5558 2885.5558 8282.7014 13821.0744 5251.5442 2768.6342 3680.0646 2598.5398 291422525 napa Nitrogen Dissimilatory N reduction NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 5199.7797 3708.363 4676.5546 58301.3766 4300.4849 9916.9325 9916.9325 8632.9388 5360.5306 6054.4381 6780.9766 2843.4255 7367.6049 13056.9823 5041.0783 11064.8974 5177.5577 5495.7755 2061.8302 3196.8809 7184.994 317047753 chitinase Carbon Cycling Carbon degradation Chitin Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7808.4342 2840.1157 2906.6755 2368.0501 2368.0501 5436.6149 3252.4014 4388.5365 5363.6629 2549.9883 3232.8801 38524269 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 5335.0907 4615.3329 3437.854 3352.5808 5553.0123 4333.5453 3290.8307 3907.8137 223937280 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 4970.7703 4161.5039 40693.8382 3546.696 2713.5543 2713.5543 4662.9406 5211.9533 7987.822 4006.3565 2251.4785 17067.3051 110635153 xyla Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 362570.7536 2202.5537 4679.5924 7984.0472 4216.1604 12904.3012 12904.3012 6083.4812 3579.3952 2370.4909 11435.3059 7730.34 4250.1631 8070.1654 7777.4289 29652574 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5349.1591 8208.805 2364.4762 4384.7402 4911.0135 231260.3205 6028.0521 4032.6126 4032.6126 2923.7808 3451.2367 24940.087 2172.2386 4453.7149 8576.9207 5668.7777 6117.0086 2729.5568 5216.6622 186660336 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4180.2365 58838.3616 4449.4641 4491.5553 8837.7765 6030.2891 7921.6109 2167.9954 3626.5692 2305.1263 293392797 cysI Sulfur Other NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 5685.9632 18623.6033 5602.9371 2815.3822 88643147 dsrB Sulfur sulfite reduction NA uncultured prokaryote 9107.0672 126635.0979 17290.0163 8060.3134 4247.7623 4470.0767 2587.0866 103429.1998 5830.9394 4439.9458 11330.5955 10972.1535 10972.1535 3225.9302 18293.5747 4259.1661 5222.4951 13579.3518 5938.3596 14104.2174 8144.0645 9013.8152 8333.6725 10922.8696 2861.1987 5512.7097 5146.0665 12179.1549 118424298 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5849.593 4837.2234 72422.3846 6099.5345 3535.9569 8823.4544 8306.494 4484.07 5514.0728 4647.583 2486.123 78245.9118 6246.124 3313.0455 13134.226 2758.5175 3683.0539 3197.2954 11579.8359 6360.9329 33456997 phdci Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. A5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 4410.3623 77648.1812 2663.7182 10345.8967 4870.1543 247539189 arsc Metal Homeostasis Arsenic Detoxification Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 4061.7103 12283.8376 3225.152 2268.2531 2358.9682 9056.2926 3605.0491 4351.731 11039.6058 2661.8229 8311.7299 5622.0933 5585.7158 2932.8793 3190.0515 4147.1001 6810.8517 307585941 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4583.1246 53403.1745 1767.9755 10146.7438 4554.8103 4966.8403 3516.6222 6463.5941 3908.3332 19723.6432 6308.1946 6270.5798 2738.542 3172.6115 347817594 terc Metal Homeostasis Tellurium Detoxification Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 5010.6405 7108.6152 3111.0025 4962.4806 4270.9296 7510.5574 6648.317 5734.1885 7291.1682 2189.7614 3325.4699 2474.1651 359799963 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Achromobacter sp. SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 4082.6415 2253.5716 1864.3667 8178.2494 2559.2443 73620.8925 29118.0606 2665.0927 3513.5615 87198564 bend Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 13562.2605 8352.0928 8397.9852 52468.272 3725.6181 3731.2219 5375.5793 291424657 cysJ Sulfur Reduction NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 3894.6555 8126.0225 6343.0693 2871.5898 3194.8142 3199.8191 98727.9434 7282.11 4262.0394 6910.8736 2856.0774 4128.9595 12921.6234 4767.6099 2228.9529 3250.9205 2386.3901 7072.2932 255107136 pgk Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 4671.3589 384921391 alkb Organic Remediation Other Hydrocarbons NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 13198.8206 36942.6909 4969.1011 3154.5539 3814.6498 5857.3862 45783.0269 45783.0269 4182.8676 8059.3524 4248.6165 5019.4427 11406.444 2669.3382 7356.4836 7638.0131 11408.2066 2910.745 4846.1178 2284.98 9259.5332 355538147 amyA Carbon Cycling Carbon degradation Starch Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 4576.4952 146153409 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 9478.8308 6481.8577 4752.2194 89073870 ppx Phosphorus Polyphosphate degradation NA Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 5979.6336 212525954 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4739.187 5065.1676 5360.0053 2309.3549 3670.3856 6475.6621 2686.095 95432.3787 5676.932 5424.0243 7927.4026 8453.4073 4577.5629 5402.6549 2904.4858 2694.5696 5982.8112 9700.7707 6035.2488 2412.7517 3537.1681 3167.1207 2520.1214 4949.9587 217507970 arylest Organic Remediation Aromatics Other aromatics Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 5035.0907 30410.5554 3625.7192 2952.8729 3987.2511 4117.8697 119882.8085 5850.5127 4716.0544 3165.8947 3165.8947 8448.869 7947.4195 10869.0344 2479.6915 2604.5797 8865.5751 2786.4193 10357.7322 6406.909 7715.5369 4491.9141 4103.978 4040.678 4443.1856 32936.928 153870795 napa Nitrogen Dissimilatory N reduction NA Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 10207.9012 11769.1094 3062.6973 3848.3099 8448.1415 4879.395 5034.4602 4840.5761 4890.377 6382.9136 7035.7592 2315.087 3911.9686 4022.028 5726.1882 388601883 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio campbellii DS40M4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 5881.1512 3820.5709 77211.4696 5710.5772 12403.0547 12403.0547 6035.1079 330790.5221 5076.0716 2259.259 4625.1239 5418.1325 2299.9328 110257.8889 256831972 xylanase Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 9478.7818 10484.1273 5812.9838 4022.1869 4885.5337 3938.8909 8224.497 3285.0884 3512.994 2321.1554 3109.5798 2391.228 295978567 B_lactamase_A Virulence Antibiotic resistance Degradation Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 4609.0659 2811.5632 4919.5976 3448.4616 4490.8046 2644.5541 87238.2787 5670.1755 5421.2603 8940.4549 4119.4891 4119.4891 2696.576 11806.6689 6183.4026 20090.0243 4290.1719 2469.5473 4451.4037 7579.3676 3440.6025 12085.0463 6195.9372 7843.7925 2368.9187 2973.5315 9140.1067 392855475 bphc Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. trifolii WSM597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8389.1905 30667.0104 14858.088 8676.9637 4269.5737 2380.0168 123802.9103 4970.782 6203.2179 8446.2473 5235.2031 5235.2031 3990.556 12333.2192 12189.3121 4285.98 19518.137 2706.4658 14843.0919 15045.7762 14710.1045 5116.3456 4621.4371 2161.8247 164455298 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4441.4251 17956.3301 5589.9121 11453.2351 3557.0298 5295.2065 3845.9261 76669.2343 50927.2713 9501.8018 9462.7924 14921.216 14921.216 3590.8827 50849.1269 4141.252 9505.3942 3701.1277 11645.952 14720.2399 9720.5025 3719.8697 4094.5413 6369.9968 300390299 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5309.9777 8078.9029 4709.4468 2490.2356 2604.5991 53800.9598 9667.8274 4277.5719 2645.4594 2645.4594 3211.5965 10784.8563 7581.8174 4774.518 9630.1449 7593.9435 12506.677 6191.7141 7296.2069 2123.6598 3973.5174 3590.7877 2479.7365 77378467 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4363.2735 3952.313 3024.5608 2265.7452 4673.3847 6630.9108 3159.4015 71653.2767 11081.9412 5170.6631 24793.2319 24793.2319 9444.9303 3996.8809 6062.1807 3916.2086 2378.8323 3764.1823 11655.5403 2694.5547 5847.9579 2332.6017 4033.4574 4176.3782 2129.5202 6460.8615 116270553 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4520.4588 24727.7433 1911.5487 1911.5487 5409.5515 4224.9485 3902.4526 2025.7295 134082586 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4126.7429 4252.7063 3457.0121 3424.8736 1924.7872 1924.7872 21844.1095 1623.5176 16272.9583 15621023 alkk Organic Remediation Others NA Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 5332.6881 384073539 cysJ Sulfur Reduction NA Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 3993.5077 6308.3629 3757.1892 111087.2009 8663.9312 4758.1547 4758.1547 3420.0049 3122.4825 10093.7625 2298.4403 6831.8523 8417.21 4356.7334 9141.4808 120553846 arsc Metal Homeostasis Arsenic Detoxification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 6026.6486 156059180 ara Carbon Cycling Carbon degradation Hemicellulose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 4436.4713 15818.4553 2810.9978 3837.7493 2734.1136 14363.4288 218288652 tehb Metal Homeostasis Tellurium Detoxification Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 5315.1416 7536.6803 3562.9291 3807.778 4702.4174 87500.8654 4462.0688 7289.2942 3201.0305 7128.2306 6423.6869 6944.042 2654.4496 15559.5382 8543.9785 6592.4875 4171.0942 3566.9896 4427.5142 6128.1385 170721162 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 5531.6717 13016.8534 3981.3595 31503.0209 23268.8476 68265.0085 4680.6124 4736.79 8633.0132 8633.0132 52833.8077 7507.3067 5387.88 2162.0958 4697.6745 10531.0722 27863.0167 3869.7996 6786.8811 5200.4158 3140.7805 320451166 SoxA Sulfur Sulfur Oxidation NA Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 5765.467 22579.8993 2139.941 15638.7714 4752.8874 4752.8874 5453.0639 70991821 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 5092.5468 15442.2426 30304.0774 14160.2594 3457.5599 14303.1108 14303.1108 8473.6591 4272.0456 5101.4576 8407.084 5427.2862 4834.2835 371445048 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7819.2127 5259.8966 2288.0894 2288.0894 1627.7874 13249519 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8822.8978 20469.6127 3264.3921 9580.5273 14304.2917 457046.537 14421.5303 5672.8569 13776.916 5402.6465 5402.6465 3366.6113 5224.1955 3936.9944 3961.3863 11141.9876 4814.7279 21589.6624 4910.8814 11422.7796 4103.7433 3130.0714 10202.3858 2428.1262 375158947 aoxb Metal Homeostasis Arsenic Detoxification Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 5842.8266 4402.8766 336429371 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 8489.3635 1966.839 2794.9314 14341.5081 28199.1829 2815.4494 188028924 gdh Nitrogen Ammonification NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 354580.2858 452042.8845 4578.9112 57850.4143 5394.548 21452.124 21452.124 11650.4285 8656.9835 3567.6081 8068.1046 3219.0045 5308.8737 3654.8733 381383720 nrfa Nitrogen Dissimilatory N reduction NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 4624.613 11351.9138 2821.2595 8735.1299 8065.2683 2204.7314 4364.2969 4163.6024 3429.7252 8362.7819 5640.5446 2171.5321 4888.7173 2939.5817 7327.9277 5209.9587 2126.5334 238588418 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7879.4396 359834819 poba Organic Remediation Aromatics Aromatic carboxylic acid Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 5037.8238 11345.0967 67902.3914 3374.0925 2477.1627 2477.1627 6419.2708 4837.7294 4215.4474 12052.828 2444.7175 7706.6141 12102.2404 5333.3157 6995.3243 1937.8911 3953.4773 292664466 mer Metal Homeostasis Mercury Detoxification Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 4152.7142 10822.018 6802.3502 31506.7764 149360955 bphd Organic Remediation Aromatics Polycyclic aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 7213.2491 7906.6112 7673.8518 4985.8057 19630.1582 10106.9437 10106.9437 8976.212 5543.49 5222.5726 6160.0678 2822.5685 9935.9716 6268.3895 7169.7027 3352.0223 3082.8022 3283.2923 2286.2372 8482.2675 3927889 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 11055.1962 2503.6341 2420.6349 2079.9494 3713.9617 6016.7464 3676.8684 10111.9003 7325.3602 2078.7919 3914.9414 78498504 nosz Nitrogen Denitrification NA Thiomicrospira denitrificans ATCC 33889 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 4543.0335 2604.3257 3044.1151 2912.3733 2887.6037 93673.9681 3406.5132 8470.2815 5610.0096 4840.4979 4704.1864 6429.4272 2578.2457 4623.1129 6237.749 3199.5407 3757.5875 3380.3871 2639.6966 6066.221 342793850 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 6631.2963 13365.6313 11107.9493 221721940 endoglucanase Carbon Cycling Carbon degradation Cellulose Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9805.1522 12520.9147 2617.1435 13768.9055 68782.7613 3608.503 5777.4821 5777.4821 2977.9166 9114.5472 7864.3925 3154.4775 6480.8785 2444.286 12100.9498 4653.0688 8926.8346 3925.6589 2425.4419 3656.9177 159040073 bphF1 Organic Remediation Aromatics Polycyclic aromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 6609.4358 6556.7571 4853.7517 21117.853 2417.8162 118434466 xylanase Carbon Cycling Carbon degradation Hemicellulose Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 3772.2098 25807.3912 2423.0745 151562410 arsc Metal Homeostasis Arsenic Detoxification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 7327.5974 4873.2885 2963.9116 2437.991 3426.787 11085.3141 4841.5259 67059.0481 7256.7833 5015.1567 4239.3493 15577.5988 15577.5988 3001.3752 16200.8931 6128.2038 5366.5729 18849.8349 4446.6449 3378.2023 5776.6562 8669.928 5889.6481 11275.0458 9329.1264 10652.861 3759.2136 4912.6175 7987.3449 6101.2737 7648.7259 422314321 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5499.2054 4578.5604 1944.039 2498.419 4482.0566 3055.6368 4827.6576 4648.4225 2989.7165 2593.9887 5340.947 332741684 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides coprosuis DSM 18011 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprosuis; 5021.1492 3945.0377 2305.0132 3805.2654 4892.1503 72093.5092 4388.9491 4436.1385 9922.2326 6817.2395 4895.8847 5137.8169 4742.0268 3046.5525 3672.7133 9987.701 4989.6538 10490.4087 2559.7186 13423.1703 4876.7257 168195189 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 4219.9797 8560.9035 3363.2703 13274.1361 4951.8329 4521.7112 6080.462 12297.6245 3375.2416 2975.5815 356481393 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 3955.5803 13401.2875 4416.0544 3503.9111 2381.8237 2381.8237 5933.5386 2335.6371 4560.7208 2746.6479 326197429 badh Organic Remediation Aromatics Other aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 4104.4468 5147.676 231798.3956 5162.6857 19095.307 5609.5065 4549.5191 4644.3902 1750.7028 5853.6258 2792.4004 1947.645 87119641 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 5159.766 119026577 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7941.1517 5708.4347 4398.5055 8040.969 5614.0643 5614.0643 4669.3492 2735.0066 2268.3253 10072.306 4944.2203 8035.8631 3003.0677 4078.8018 116228984 ara Carbon Cycling Carbon degradation Hemicellulose Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 5766.1822 10347.4307 2574.6067 2869.9367 2097.3345 3526.8633 5791.2921 139497.1506 3867.5014 3690.0787 3690.0787 10904.8216 4005.8629 3839.6217 4699.1567 3088.9652 6711.728 10162.2732 6499.3308 1786.1873 3353.9244 3339.3772 2241.4846 5360.5748 115366575 cellobiase Carbon Cycling Carbon degradation Cellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5030.0723 150163.2297 4126.7798 109452393 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6755.1769 9760.7286 2896.1334 5372.4013 2403.0737 2403.0737 2376.3843 6388.6107 2708.6527 4991.0581 2915.4636 254501954 nirb Nitrogen Assimilatory N reduction NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 6269.6849 3781.2714 6152.3767 2239.0999 74420708 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 4337.2736 1880899.2786 2779.8024 4706.8716 3703.618 3001.1146 4755.2758 2667.8048 84036.7632 6800.0823 7177.4352 5345.9243 5683.7322 5683.7322 3516.859 10325.4051 5488.31 4981.543 102835.5446 4406.5437 2674.9315 5540.1593 9827.614 3891.8233 14432.1204 12912.7916 8675.987 7838.5187 6117.2776 4698.8309 2860.5063 6030.2841 21674327 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 9935.2403 2638.3592 2638.3592 9311.3991 3801.0101 3209.0451 5544.9628 3623.1417 5838.6718 3995.4526 6349.4971 302471342 pcpb Organic Remediation Herbicides related compound NA Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 7911.4379 19677.2216 9253.4189 6400.1151 3288.5627 5166.4019 3665.3267 147719.4804 6279.5163 6959.6149 6900.0597 5164.2399 5164.2399 9054.8181 14312.7786 9767.7301 4949.5706 6592.2692 5170.7933 67208.7816 3949.5868 20086.0217 16355.3878 17324.6165 6897.8075 8803.7248 3522.2208 5302.9771 151302125 APS_AprB Sulfur adenylylsulfate reductase NA Thermodesulfatator indicus superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator; 5186.7881 2288.7284 198262243 alkb Organic Remediation Other Hydrocarbons NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 24843.4012 11147.0056 7461.2119 4563.2295 5199.1102 2453.704 2453.704 8829.6612 6031.2963 3742.5813 2977.7306 12749.0968 8998.0985 2781.0822 2706.3281 319637710 tehb Metal Homeostasis Tellurium Detoxification Neisseria mucosa C102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 9372.1217 3066.8824 2182.0913 2561.8308 3356.1211 5916.7359 4178.0881 3774.5187 3774.5187 2611.4054 8259.7987 4984.4094 3699.1217 4171.592 2675.1293 6414.7156 2560.2665 22376.4381 2333.4895 2825.5991 4178.3245 2153.1416 334120663 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 4376.8336 10623.6914 6091.064 5456.3675 291196982 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3946.3755 9074.9143 4004.331 4538.1866 5900.2905 4188.7813 14214.8109 8289.7913 6458.5368 4919.8839 6684.2783 2888.8615 3235.9278 5958.0688 2480.8119 14396.0056 5744.7923 7665.9922 1827.8686 6918.1159 148272611 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 6080.3351 7903.4554 32922.6619 6028.3991 9020.8397 4235.0423 2209.7731 10113.9166 5796.7075 14955.8681 12405.6824 7338.752 3428.234 3297.8443 2794.8603 218564062 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3951.6888 365922069 ppx Phosphorus Polyphosphate degradation NA Cardiobacterium valvarum F0432 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium valvarum; 4083.677 13559.6135 3418.629 3482.0325 109252.94 5452.6656 2885.4111 2885.4111 2964.1555 7928.7875 4826.8658 3998.0682 4447.2062 6359.8741 2666.2693 12647.4147 5365.7698 6176.7553 3890.4516 4057.0969 3531.4464 2795.0062 6268.7362 29833938 amyA Carbon Cycling Carbon degradation Starch Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 407130.2132 110012.1184 8705.2591 5228.8698 2490.5947 2490.5947 6838.9919 3909.1565 3395.9268 7642.7395 2703.668 5708.9663 5738.3324 2094.3659 3610.5686 4855.9992 296930644 amyA Carbon Cycling Carbon degradation Starch Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 6921.1039 7706.1176 2890.3061 5878.1032 6971.8615 4687.8303 2147.3656 2147.3656 5155.3307 4879.3471 2465.2756 2158.8523 6401.9721 7257.2548 5165.4077 3595.6398 2693.5293 5651.8156 149927710 tktA Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 6039.5851 11430.0506 1963261.7285 8603.939 5090.2845 6354.792 14522.8416 6192.754 17457.4505 307743898 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 4332.5369 73893.9484 10662.3179 2173.6184 3309.6315 4717.7962 211959451 pcag Organic Remediation Aromatics Other aromatics Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 13872.5383 3150.1675 2750.2726 2341.846 7188.7845 72724.9299 6272.9503 4749.171 5210.1993 5210.1993 23868.637 10737.8843 26383.8192 2113.0937 9132.9496 5261.938 23948.2916 8054.9846 12702.1031 6081.0832 2756.4261 5491.0506 6531.2467 3803.2147 187477438 ppx Phosphorus Polyphosphate degradation NA Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 9507.3158 6397.4226 6756.9294 2520.2243 2520.2243 6644.856 7447.5245 4187.1872 7732.3209 7358.55 10336.5687 5136.6667 5920.3304 2421.9726 3110.4508 3354.0378 2290.5748 397726027 cmci Organic Remediation Aromatics Other aromatics Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4249.8123 4191.3562 4568.0116 3601.355 6570.8508 5108.216 3895.8037 2490.7951 2490.7951 3189.1876 4394.8015 5933.0897 4433.0587 2910.3442 3314.175 295397059 amyA Carbon Cycling Carbon degradation Starch Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 4370.603 6901.8017 340529844 xylanase Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 3863.0819 3944.7826 2169.3486 292665135 ppx Phosphorus Polyphosphate degradation NA Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 5710.6487 8792.6117 9114.9302 5224.9049 3662.2947 7367.2376 143619.9882 4719.8545 32874.0802 3163.3269 3163.3269 3491.0556 416557.427 14593.5949 5519.3371 9964.5567 3264.1291 5160.3638 6515.6887 2555.7438 15141.538 18505.0158 6028.9815 4785.6769 11760.9073 4693.3116 3362.3937 5436.3522 171990794 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 7085.6671 2737.943 3616.59 2534.5284 3453.2889 4521.7184 5053.1406 3062.8011 10117.0344 7946.8654 4060.2943 63506.4645 4041.256 2622.8988 3665.6819 6905.6876 2824.9199 10248.5655 5424.7354 6605.6117 2875.0287 4340.9358 6431.7397 2904.2762 4791.9249 320161960 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 4601.9442 10905.665 2390.8523 3671.171 81735.247 3477.4353 4378.4615 2567.4223 2567.4223 2571.6643 4030.7273 7758.069 2773.4429 7061.3885 5932.1674 2223.2718 3738.3516 5032.8955 388554477 gdh Nitrogen Ammonification NA Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 4154.3865 12495.8502 4909.513 2486.7548 3027.9527 72079.1309 4016.5462 6991.8762 4643.8952 4643.8952 5269.8125 3396.991 3679.332 2459.544 6131.8492 6188.4985 2340.1847 2403.4352 3463.6782 18034223 aps_apra Sulfur adenylylsulfate reductase NA Desulfofrigus oceanense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 4122.2652 6892.3163 5824.8306 2662.4197 345707.9403 4208.8423 5812.6894 6930.1935 5390.86 9351.0378 2861.6194 6203.1332 9435.2426 6517.8071 2509.8831 5760.217 4011.2429 17039.9945 406718173 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 3987.7084 10206.914 2339.6461 3648.5072 4144.8897 3890.163 3890.163 6820.4583 3149.0827 3633.7596 6015.5738 379059595 arsc Metal Homeostasis Arsenic Detoxification Serinicoccus profundi MCCC 1A05965 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Serinicoccus;species:Serinicoccus profundi; 48699.502 2549.9338 2304.6553 2304.6553 1861.2496 327177872 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4951.768 7045.8145 2127.1595 2107.679 4683.2494 58279.0689 5385.2178 8625.1136 4168.8559 11142.5478 6323.5569 3967.0745 2618.2704 8226.3371 10141.7229 5552.914 5723.6562 2746.2759 3990.164 3023.8527 7137.0305 338740427 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 8210.4489 2196.7463 2479.5055 2703.8559 8403.5434 5657.0248 384466963 urec Nitrogen Ammonification NA Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 5410.9436 3200.7952 5479.4964 251305.3281 4168.8415 131201.5673 3141.9669 5276.5663 1920.2254 2890.3588 288895729 cellobiase Carbon Cycling Carbon degradation Cellulose Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 5647.9778 36730.0615 5223.843 4097.1191 2753.2672 4973.2416 6325.0101 26199.7574 2055.286 2055.286 4219.0967 5146.6997 5237.9364 2734.069 1893.7048 5076.579 2319.0345 218283365 arsc Metal Homeostasis Arsenic Detoxification Eubacterium biforme DSM 3989 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Eubacterium] biforme; 5667.7443 9494.3592 4177.7027 5860.2705 8930.5855 6266.4838 5694.529 1904.0971 384078189 xyla Carbon Cycling Carbon degradation Hemicellulose Stenotrophomonas maltophilia D457 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 5814.2077 3204.2949 354560560 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 5279.6228 25361.557 5227.3099 6083.4606 4124.1573 4798.8423 6182.4001 7941.6291 4095.5633 5568.7153 2303.0756 3022.3289 2940.3494 377578322 nirb Nitrogen Assimilatory N reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 4154.207 2916.5012 4233.8135 3383.9823 5680.9015 2519.6885 5473.3746 1811.2872 1811.2872 5134.251 3331.8618 5372.5646 6256.0729 4341.0578 4910.6686 7310.3086 126035161 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6390.9431 2584.3459 3761.8079 10309.0773 78388.3056 2371.7069 2371.7069 8389.4675 5839.5012 4671.8911 6150.4374 5308.9913 4363.2031 2778.9533 10976.5691 2892.3875 11624.6784 6955.3462 8580.134 4241.1678 3738.1038 3980.3937 3114.0127 5633.3448 373546193 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5540.7205 5275.3734 7743.7979 45130.3941 36555.1449 3257.9645 308750395 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 8106.3869 13244.3029 3048.637 53989.2478 5548.8576 4076.4756 2610.5548 5640.8727 4735.3701 6699.3326 2957.6998 7588.3733 9339.0985 4758.9172 6612.0703 2582.6512 3682.3089 13249559 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3564.4817 79708.7435 3405.9535 2608.6592 2608.6592 3511.4266 4038.4251 5969.3888 2629.8469 3461.8383 2938.374 2460.128 77921109 rubisco Carbon Cycling Carbon fixation Calvin cycle enrichment culture bacterium superkingdom:Bacteria; 16078.5118 10903.1912 511302 exoglucanase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7851.0907 2295.6455 2675.832 3523.45 72477.467 5436.5838 4914.5976 3865.4418 4604.6095 4604.6095 7260.1759 3716.9983 2854.2707 2610.606 2508.4083 3592.6745 7004.6811 2411.5667 3530.8936 3257.1078 2173.0835 4862.7313 51534833 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 48839.3377 3755.0795 1823.8709 1823.8709 7125.1958 4011.2571 4009.6252 5743.5293 4721.3706 5857.9806 3777.4516 3737.7038 162707916 catechol Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9519.54535 294364.697 7056.75715 4686.55355 8340.5942 164057.36925 12572.4433 13104.4043 13296.9269 26620.067 17621.7845 30086.34175 16953.09685 19347.83075 14687.0489 227876668 gdh Nitrogen Ammonification NA Mobiluncus mulieris ATCC 35243 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 5172.8209 5172.2871 3548.2202 4686.0571 126734728 urec Nitrogen Ammonification NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6039.0259 3084.0272 2237.3538 2249.8215 3557.1981 3930.7894 55992.221 4269.053 4810.4279 4844.3092 4022.2941 9458.125 5267.1863 8247.1187 2284.3016 5541.6638 3383.7696 8697.7244 6221.1388 4906.1331 4585.9945 4845.4249 2459.3594 5712.2546 118706444 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 12307.8783 345002754 RgaE Carbon Cycling Carbon degradation Pectin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13577.4877 2629.1802 19733.449 6877.3017 1577.0451 3079.2099 3172125 hbh Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4017.9652 4271.3724 6168.1627 2230.2717 2170.5493 2535.033 1724.557 2874.6546 5158.9417 365228901 terc Metal Homeostasis Tellurium Detoxification Staphylococcus pettenkoferi VCU012 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pettenkoferi; 4353.75 7805.1134 11327.2768 3584.1617 5006.794 2268.7747 6039.9602 15437.3931 3019.0615 283481816 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 7615.4747 9524.7479 2222.7536 3990.0869 74570.9984 73541215 arsc Metal Homeostasis Arsenic Detoxification Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 6101.3557 10519.2898 4413.749 2477.072 2076.7198 3558.8272 3748.9634 2842.8836 82625.6198 4196.5961 3731.881 4225.9188 3197.2548 3197.2548 3388.2349 4822.2603 3939.3393 3862.196 7215.5128 2958.1297 8896.4523 2219.11 9760.1433 4275.4083 9938.6768 2771.4022 3533.3901 3294.4646 1967.8698 381357620 nirk Nitrogen Denitrification NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8764.0976 10101.087 3046.3085 3946.3285 80860.6789 4304.1365 2395.093 2395.093 4346.2597 5521.5519 4952.1537 2673.1745 3569.819 1536.2456 2943.1179 15979.9973 46241266 exoglucanase Carbon Cycling Carbon degradation Cellulose Nectria haematococca mpVI superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 3922.5447 16955.1246 9566.4268 3483.9519 2471.9739 9499.2119 5448.5508 2932.4611 7190353 amyA Carbon Cycling Carbon degradation Starch Chlamydia muridarum Nigg superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia muridarum; 6392.7384 10572.1317 3473.0099 3390.95 76078.9306 8221.4564 404329697 B_lactamase_A Virulence Antibiotic resistance Degradation Sporolactobacillus vineae DSM 21990 = SL153 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus vineae; 4230.867 2438.8746 2393.2292 56674.0626 2964.788 5684.2294 3607.1657 5547.5473 5316.2495 1996.5325 2719.0671 2129.7046 7530.5469 82791818 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces davawensis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3913.1026 20572.6264 4721.7676 225194053 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4579.3275 13476.9072 2164.6431 1557.7357 343774438 pgk Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 8190.001 329901004 TIM Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 3959.5248 29324.4481 36919.9514 3625.2874 12103.4292 4370.0423 1121826.4242 7162.4847 11709.7425 24575.5307 24575.5307 2832.6561 21968.1161 9491.3015 3727.0368 20048.7101 9407.7222 9676.4147 5685.7132 4221.6795 15377.5101 14709.0021 7226.9403 4990.022 25918.6956 8218.1815 7726.1389 19321.7821 346058532 merb Metal Homeostasis Mercury Detoxification Pseudomonas aeruginosa NCMG1179 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 15464.0501 3272.0576 3280.6727 2438.4354 5018.5109 4770.7066 2700.8468 92117.1225 4627.0349 5709.0928 5526.4412 3636.7314 3636.7314 4255.7557 10581.4377 8893.0642 5425.3823 5212.3082 3436.3231 3918.8568 11242.4612 3372.9979 12558.6618 6720.5171 8298.5819 3502.3268 5239.0045 5609.2418 6114.6992 55979208 norb Nitrogen Denitrification NA Nitrosomonas cryotolerans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 25935.0345 392951843 phdci Organic Remediation Aromatics Polycyclic aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 10352.5257 2733.7171 4356.7252 3897.8569 350781.3406 3700.5397 6103.0273 6151.3798 67341.3487 5497.9142 8629.5202 4729.5552 1828.2584 4259.0842 3508.8872 303317920 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 5468.9614 2520.6741 3233.287 2675.4526 89743.7708 5652.9314 3153.0065 3713.2316 6494.6862 5166.4815 4142.5786 4009.6088 2635.7547 3112.8943 6253.8584 3276.1634 10712.8831 6039.6662 2551.0457 2896.0249 3830.9592 2565.7196 6237.7735 306488215 nirs Nitrogen Denitrification NA uncultured organism 4873.455 219551666 pula Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4379.8997 3918.3373 3213.0854 4551.9268 4027.3187 3033.1432 6423.0059 5489.8042 2114.7665 9778.3519 5237.1073 8332.6464 7619.4979 4083.7217 3643296 EF1a_Stramenopiles Other Phylogenetic NA Blastocystis lapemi superkingdom:Eukaryota;genus:Blastocystis; 7264.8532 10213.3072 4653.0273 328842092 pme Carbon Cycling Carbon degradation Pectin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 7941.154 9430.5067 294677131 cysI Sulfur Other NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 9674.826 2896.7641 14942.8985 2223.9365 2223.9365 4362.4603 6650.4926 4707.4648 4452.5288 2255.9371 2504.3036 2250.5813 4924.8372 7817.0056 2218.4567 5970.9828 14389271 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7575.9997 399985224 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 85551.2752 3897.8173 2330.8163 6020.4528 2797.4621 14712.5515 3281.1153 4516.7151 2270.8571 7744.3427 5567.2934 2478.3891 5332.0353 330960974 amyA Carbon Cycling Carbon degradation Starch Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 7645.1454 11209.4987 17040.5902 5476.236 2842.2853 2227.6905 2227.6905 6778.0344 12257.4761 2152.0611 2690.2046 2181.1036 115522633 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4728.467 2355.6565 4096.6984 6941.475 6092.5474 3111.1115 5173.3978 3406.8418 9145.0644 3599.0653 123229694 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 26026.9743 17490.0461 10155.0129 10313.8996 70505.6445 7266.5908 6792.414 7880.9483 2563.5827 2563.5827 2746.4121 8798.4685 7428.6762 4866.2259 107846.18 3056.5927 9135.7403 4047.6883 12900.9294 6291.5451 5431.6646 4524.0563 3086.5309 3784.2107 3706.1536 5551.1829 373248990 pme Carbon Cycling Carbon degradation Pectin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 12566.6728 99588.4634 6161.806 6811.957 342793994 rd Organic Remediation Chlorinated solvents NA Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 5359.6605 2574.5768 1937.2905 102447.0772 4233.0191 2732.7016 7340.9678 4037.3597 9010.3659 2985.3968 4204.3583 2021.6431 3742.4717 3606.1171 2558.9522 7326.6343 377813186 pcag Organic Remediation Aromatics Other aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5612.1211 9958.1207 6917.3382 2688.4618 15437.2881 5255.3613 9571.3682 60285.1633 5641.8078 11456.5019 4637.7082 4637.7082 4488.1538 7995.3875 8707.9553 25423.415 6242.5684 29660.4564 10748.3227 24900.3381 10145.8171 31243.1478 10170.531 4096.717 5825.9507 60104.9174 23256.9074 8339.5541 259170061 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus antri DSM 16041 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus antri; 3682.0299 21098.4525 2121.2232 2121.2232 2127.698 5044.9481 2641.123 300866365 rubisco Carbon Cycling Carbon fixation Calvin cycle Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 22804.0593 21223.5136 6678.214 3066.0523 3356.1476 10880.5452 2858.007 138939.4002 5870.4185 23067.4458 8750.4158 6186.5969 6186.5969 12320.1028 11438.889 3231.9562 3209.0375 14765.1904 24753.1063 23873.9955 10748.2379 10108.8342 7579.9232 5863.5389 14091.2909 124022279 amyA Carbon Cycling Carbon degradation Starch Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 5669.9333 9530.6443 3340.867 15731.454 9099.9367 5771.4269 5688.8075 109356.3186 4496.9913 4264.5171 4376.3778 3788.7009 3788.7009 3852.0964 9064.4004 8330.9733 18011.4571 5561.8944 2891.1988 10652.5549 10194.7387 7797.015 8952.3199 16580.1164 5741.9374 5007.5151 5236.08 8255.7697 2480.0197 312439574 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 13828.9612 4578.9456 2744.8274 190615.6688 3905.999 3905.999 3315.3988 8252.488 2521.0222 7900.0966 2991.9585 4785.1249 75812283 amyA Carbon Cycling Carbon degradation Starch Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5404.2409 172056884 ppx Phosphorus Polyphosphate degradation NA Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 8011.5964 10484.1499 5200.3644 4950.8361 5987.0517 2984.2995 67425.9767 10225.4993 6085.2697 5131.9022 6296.1236 6296.1236 4670.0259 119752.547 3675.227 7815.2461 8734.5858 2939.5497 7042.4596 13703.3133 4328.9381 14053.5752 12278.5271 11001.8104 7424.5447 8568.6811 44311.4897 4262.4721 4251.4136 395813071 terc Metal Homeostasis Tellurium Detoxification Melioribacter roseus P3M superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Melioribacteraceae;genus:Melioribacter;species:Melioribacter roseus; 6973.7408 156102190 gdh Nitrogen Ammonification NA Plasmodium vivax SaI-1 superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;order:Haemosporida;genus:Plasmodium;species:Plasmodium vivax; 4697.1436 22145.3968 6194.1403 2908.3644 2835.3232 95779.8111 3744.5591 10333.886 5007.0762 5007.0762 5586.2152 6725.8024 13224.0587 3685.7588 5078.3294 1735.1507 30269535 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 6547.465 310799506 ara Carbon Cycling Carbon degradation Hemicellulose Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 6620.7496 3730.3149 2087.4598 3932.5946 3631.8924 5681.6503 10501.3387 6258.4051 5820.8415 4451.6445 4892.6475 6142.8751 2442.4039 28988.8765 3598.2052 6355.8957 3149.7675 6759.821 3754.5508 2227.568 384080513 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15781.3412 144898943 dsrB Sulfur sulfite reduction NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 4209.4773 5102.4845 2409.8303 53691.5423 5728.3981 6360.8253 7311.5321 4704.9124 3696.2816 5728.7147 6572.7137 2246.3846 2975.0653 14736.9699 4865.0109 2470.98605 4047.18285 6722.0746 1902.7601 83592244 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 5662.4711 26195.1559 13575.7676 3232.4266 5066.9376 5465.9754 6954.8553 3779.905 88225.359 5484.7048 12525.4829 8298.8479 5738.1626 5738.1626 4434.874 3456.576 3375.4592 6958.8589 4895.3191 5248.7733 16683.4116 3529.3663 12172.0347 7990.3117 10024.0266 3995.2019 3902.3003 2876.9241 1800.5801 9138.9524 1488172 nirk Nitrogen Denitrification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 9758.9211 7085.5205 5095.7303 4474.6448 2683.8095 326946924 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 333038.0817 7792.9455 3492.3227 4735.4444 3846.5428 5859.48 3151.9955 4328.5215 3248.1249 3436.7055 171679840 endochitinase Carbon Cycling Carbon degradation Chitin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 13515.1584 5006.5829 2607.1159 3459.3984 2189.9983 8512.1019 4063.8868 57654.1551 5243.9561 10039.2962 2457.861 2457.861 6037.1998 8042.4654 7762.6821 7087.1457 4165.3276 6328.9083 2981.8199 13653.4723 5704.0449 9836.534 3006.5347 3986.8126 7419.3642 2112.426 6246.3881 302885330 ara Carbon Cycling Carbon degradation Hemicellulose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 67566.4878 5967.0569 5967.0569 195399.599 225046969 cda Carbon Cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 5528.9932 262026233 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 4954.326 4383.193 2426.1374 2796.4877 5340.4504 5793.0036 68564.9987 3581.9059 3671.1649 7501.2735 4350.8951 5330.462 5157.2526 4880.0327 22980.1418 3626.9784 3510.0917 10727.5631 6610.4826 2512.7745 3355.0951 3488.8648 2345.3873 8564.2806 52082274 poba Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 9696.4426 11099.8593 7980.7901 5002.7219 5159.5813 5060.826 4172.5533 11913.3983 4055.3766 122698.2264 6473.3906 5137.0016 4777.9 5506.3736 5506.3736 9714.427 11484.9844 7508.7544 13557.1932 7182.0614 5491.6039 4268.6239 5542.5811 10729.2747 6833.7234 26255.7732 14590.5414 9356.3029 8205.1428 7565.8657 5612.5958 4953.3376 12597.4533 37521662 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 7781.9084 34497699 nfsb_2 Organic Remediation Aromatics Nitoaromatics Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 5187.7095 8914.2902 8946.7913 6043.0067 6254.4728 7345.3038 4734.0833 7061.7541 7550.9443 10317.2741 3563.3902 9804.3527 4436.9622 3584.6955 3560.2132 10251.6315 28379.8943 302546963 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 8365.5184 16759.1193 4491.3559 8468.4749 5123.1633 3315.9965 64950.7425 4485.9582 5238.2473 11653.9984 2422.3657 2422.3657 2899.5167 6331.9597 4427.0116 4471.867 5590.447 2039.3308 2365.303 5831.4122 2500.8714 9190.7971 4300.1226 7119.0267 3610.4723 3811.0222 5838.5732 2939.808 29143.1811 56680586 nitrilase Organic Remediation Aromatics Other aromatics Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7012.8685 2982.5907 4132.8024 33894.2342 4929.812 5295.8287 4648.1839 6608.1646 4571.7397 5404.4479 3150.0925 82401524 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 9253.8741 66474889 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 11290.7782 7208.9791 7357.9909 3535.9725 2657.1007 6615.0558 68717.4796 5007.394 4718.0731 5736.1012 2430.7218 2430.7218 3079.2497 8706.9654 5390.657 10085.2667 7179.3865 5813.6942 3448.7061 8487.9082 3451.1951 14146.6321 5348.0106 8852.9583 2672.3684 4681.8891 5148.868 3614.7137 8327.2321 77378447 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7881.42 10878.5509 17494.6479 374576464 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4706.0165 3102.1936 126119.067 14890.3179 27802.3153 54421.4007 4673.3594 1766.5508 118073645 aln Organic Remediation Others NA Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 4710.0006 26040.1778 2238.3771 3717.324 5774.1984 65690.1733 4182.5391 3451.6048 103216.3502 103216.3502 6001.2381 4125.8298 2200.2139 8848.1353 4769.0615 2097.4374 2645.6143 4414.9732 112462559 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8488.9093 87073.3574 116937.8438 2526.5787 58687.8132 7731.1166 14093.7572 4314.388 72890.9555 19905.1171 22350.5805 18535.0961 6715.5512 6715.5512 11845.808 29418.1001 42436.5976 14924.1271 92159.1641 5371.1358 117186.4852 44916.7034 69444.8565 19722.8022 17752.6027 30904.2916 5294.6381 406822146 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas sp. 2B31 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4199.0162 82528.595 5639.8578 7374.3182 7374.3182 5822.6582 4041.9496 3089.684 2495.5199 3825.7544 226347405 EF1a_Jakobida Other Phylogenetic NA Jakoba libera superkingdom:Eukaryota;family:Jakobidae;genus:Jakoba; 8317.4101 62891.916 12412.6909 6260.7561 4263.358 2619.2808 65720.3506 8222.6782 7734.3911 7077.6196 2909.4215 2909.4215 2526.9714 5089.5446 6502.4306 4403.9629 95364.802 2004.9239 4507.8482 3139.9884 158449763 mannanase Carbon Cycling Carbon degradation Hemicellulose Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 4473.2933 4015.882 3968.5087 7603.2895 5260.1502 2872.0492 2164.3272 6352.2811 8666.7768 4328.0758 5386.5078 1728.6279 3267.5594 2137.3807 6705.06 378781462 linb Organic Remediation Pesticides related compound NA Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 4142.0788 18065.3511 98527.1852 4001.4921 8086.6241 3947.9254 2364.9955 119485504 axe Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7739.4343 14925.6106 2913.7996 7824.9275 5158.4485 3087.8945 3087.8945 11410.9443 5240.235 4999.4189 9128.7825 18687.2316 6311.1071 6253.7352 3588.1292 2739.037 11713.1854 227893398 badh Organic Remediation Aromatics Other aromatics Lactobacillus ultunensis DSM 16047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ultunensis; 7095.8038 192362344 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 5120.0617 24272.3807 55824414 xylanase Carbon Cycling Carbon degradation Hemicellulose Gibberella zeae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium; 4779.8218 7693.2158 6746.2533 11838.9081 5535.21 2934.231 4494.4534 3733.5922 3522.5909 11784.3352 5249.5713 12188.1199 12188.1199 4870.5581 6791.0232 3435.2387 3412.5112 5293.5345 2516.0187 3774.7584 9059.0163 2567.8224 9438.7544 9712.652 25330.9864 18304.0063 4426.6887 43893.6883 2545.7404 302422028 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 6808.8929 4574.0057 2569.1751 62775.0035 3926.2497 4281.7565 3627.1455 3627.1455 2261.1853 6425.5813 3838.7817 5263.3901 1657.1081 50122086 ppk Phosphorus Polyphosphate synthesis NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4604.929 34827.1937 2646.5599 4200.2423 9025.5996 5593.8874 4100.349 535049.6528 2105.0889 2408.2003 3331.0729 6230.6252 2292.0111 2636.3872 23382.18 3884.4631 5059.2119 82701522 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 18311.6041 3087.3247 3031.5543 2401.3538 69452.6108 6084.5987 3392.1942 4700.7332 3904.2543 2031.1433 2284.8606 2654.5383 3666.9992 306517774 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5952.418 12963.3898 4915.5394 5489.1148 4805.8746 149190491 cysI Sulfur Other NA Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 9175.6072 454549.4005 5404.8444 8136.8966 10583.5613 2316.1431 86144891 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4107.3686 2628.9767 4872.6635 5678.5156 75542.4861 4471.519 5472.5235 3837.9168 6716.1612 2625.5772 4872.0053 25617.2487 3171.3824 152979850 cysI Sulfur Other NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7012.603 21595.931 3681.6856 5139.487 4031.0217 3869.6171 6723.5497 4447.793 172177.1946 21594.4461 11140.8769 20290.4622 4986.8742 4986.8742 4132.5289 14426.2528 5314.873 20301.4651 6538.4403 12835.1483 8359.88 11188.0218 10173.9793 5504.636 13512.0039 13127.4759 11016.3774 5191.641 4989.7924 5931.2654 3282.3458 8658.6033 330502842 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 23726.7416 3360.609 2972.2868 4843.5185 6159.1431 2602.2905 5195.4122 9417.4614 261203269 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 4296.2768 4273.1297 3533.4051 6135.9513 2751.9893 7124.2422 5489.9217 4107.9923 4945.1031 6060.8985 2601.7576 6118.3331 7919.1704 3858.9083 6216.1018 3171.4351 2953.2762 5947.0091 226226109 arsm Metal Homeostasis Arsenic Detoxification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 5838.9405 3080.4468 3380.5467 107831.4648 3708.8596 5309.335 7999.3796 4166.73 4166.73 33401.1503 4480.1421 5138.4615 2859.3437 3531.9181 8942.0658 7916.107 5405.4876 7414.7559 2405.3374 4219.7653 2981.351 139002613 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5813.3241 2605.2694 2797.2428 2283.8999 4221.9819 3529.8064 28389.187 4526.5434 4035.691 4845.8886 4845.8886 2691.4918 11798.3547 7410.5388 4025.2408 4150.0145 4346.71 5856.2341 4171.4082 13751.3035 5967.2322 7788.4294 8603.0947 3982.1676 8303.94 3641.1711 393762378 amyA Carbon Cycling Carbon degradation Starch Alishewanella agri BL06 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 66186.863 10283.3834 6430.3086 3849.1073 3204.0961 5324.7251 1867.648 1867.648 9821.8747 3273.0697 6619.9869 14311.6985 5515.0978 8232.1555 28202.2688 3436.9957 5886.311 303325538 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4614.7124 18392.0382 5072.5989 3460.5871 6565.6303 4641.6218 18052.1953 4505.3709 58294.1526 4978.9741 5903.3905 8171.7822 5268.5266 5268.5266 11151.3052 4924.4255 4214.36 9692.6093 2747.2725 6426.6221 10165.4087 7144.9153 19527.9853 9423.5885 7062.4033 5959.0723 4864.7879 12034.9884 5334.5977 383815940 ppx Phosphorus Polyphosphate degradation NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 12456.5266 6617.9991 6073.7917 19819.1504 19819.1504 9149.1401 34778.3499 2033.9931 4864.5387 373234280 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 5686.4621 7906.749 3421.4667 5910.3103 96159.8615 12415.4683 1923.787 1923.787 8003.1245 9010.0946 6086.8934 13195.7573 5062.1292 3446.5105 3320.7332 4741.8536 145299657 gdh Nitrogen Ammonification NA Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 4231.4894 2895854 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus brevis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 4104.5159 145302229 cellobiase Carbon Cycling Carbon degradation Cellulose Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 24265.823 9274.469 4403.5676 2903.7158 7263.2365 4362.277 2113.4122 2113.4122 5580.2438 4456.287 4469.3251 3691.9974 3068.3379 6021.4833 15943.6446 8318.2512 3966.819 6001.6148 2005.8142 2440.6395 2851.3623 315277587 cysJ Sulfur Reduction NA Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 6698.56 17631.4119 334319301 fccab Sulfur Sulfide Oxidation NA Sinorhizobium meliloti AK83 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 5799.0565 3387.4726 6163.2434 3949.3971 3570.4547 192079.444 4888.9 3362.9159 8229.0401 3737.6924 3283.8465 30656.7192 2523.7985 7831.1733 5313.6221 9077.3663 2441.7183 3130.267 4003.0688 2525.5341 169886076 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 279353.7357 4032.2493 407308414 poba Organic Remediation Aromatics Aromatic carboxylic acid Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 7636.426 2299.3792 3292.1805 12888.4952 4072.8156 3587.1192 4653.0554 5251.5511 6140.3394 2795.4308 53466.1543 12705.2807 193089833 amyA Carbon Cycling Carbon degradation Starch Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 3649.0306 326951033 catechol_b Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 6481.9786 4642.2399 4661.4926 4709.3563 4561.5019 2763.1169 2216.5609 6693.0632 2854.9655 307716520 exoglucanase Carbon Cycling Carbon degradation Cellulose Neolentinus lepideus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Gloeophyllales;family:Gloeophyllaceae;genus:Neolentinus; 4208.959 9601.9589 358234175 catechol Organic Remediation Aromatics Other aromatics Acinetobacter sp. NBRC 100985 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 10504.5171 17623.9704 2139.6145 4624.6929 4951.0879 2389.39 5656.6139 2399.2765 3290.6293 4385.3082 242807247 amyA Carbon Cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 5807.4783 6927.0205 3297.0394 293614287 xyla Carbon Cycling Carbon degradation Hemicellulose Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 16542.8246 8277.0314 6582.772 3237.2913 19268.0318 6329.2919 4859.865 5078.8543 2770.1497 2541.6347 4538.3412 6937.708 312879295 ppx Phosphorus Polyphosphate degradation NA Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 5210.6789 11337.667 10636.8056 63684.349 2966.955 2966.955 7136.486 5735.7762 4062.9279 4583.8305 10610.8392 2811.8655 4626.0196 6998.8449 2658.1519 3775.2596 2919.6414 75909902 FBPase Carbon Cycling Carbon fixation Calvin cycle Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 5876.2363 55105.0656 111073791 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4433.6898 3243.7703 3942.0481 3600.272 4711.6769 5512.9006 2591.9474 107784967 dsra Sulfur sulfite reduction NA Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 68893.8413 2556.4704 3490.3542 97323.9041 8950.2498 4061.5037 9443.089 14895.7221 14895.7221 6610.8746 6310.303 8764.6552 63890.2699 2582.4547 2768.9076 8997.2031 24985.3105 12906.5389 8729.7366 3415.8327 88062454 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 37883.6702 7600.1194 11041.4433 7247.3479 106109.6019 2648.7547 5695.7914 14591.6608 5712.1235 327199.2093 21723.7765 9501.6802 15712.4679 5695.9549 5695.9549 9559.4151 8924.4833 6251.2465 5486.4538 4234.6704 3243.0816 12216.9292 4461.6885 21450.1567 8688.3597 19746.8864 8602.5155 7512.6674 4031.5129 9998.659 336300778 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 11048.0474 43096.2233 5435.3552 9327.2402 254041090 arsc Metal Homeostasis Arsenic Detoxification Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 4258.2488 2437.8898 83746.4927 12609.604 12609.604 3803.191 2630.819 4926.4509 2981.6059 4571.4172 1887.1088 2361.5395 312194042 gdh Nitrogen Ammonification NA Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4037.9603 2717.4521 4053.1608 7863.0675 3332.8055 2438.6102 308176236 cmci Organic Remediation Aromatics Other aromatics Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 6517.8503 6695.6833 1794.3595 2622.8016 3400.3067 6650.1781 63965.6368 3771.6936 3707.6227 3707.6227 3760.1631 21709.9081 4007.7899 8062.6177 6832.3136 8677.7341 2675.7656 3503.9092 40209.7931 32682.1984 3346.4474 4980.0666 2099.4563 5733.6328 4977.8704 2171.5241 225420804 xylanase Carbon Cycling Carbon degradation Hemicellulose Bispora sp. MEY-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Bispora; 5022.2619 10732.1363 6706.8859 2599.3941 4678.6724 8840.9554 3609.2197 2910.0122 9292.9947 8105.2318 5821.6024 1956.9229 4808.3442 35157.9577 386828984 urec Nitrogen Ammonification NA Beggiatoa alba B18LD superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa;species:Beggiatoa alba; 233041.4339 7659.9534 270210900 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4319.0554 4217.3133 338811781 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 7030.1081 2470.7823 2197.3155 2268.9448 25738.7148 149832378 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 10191.0939 6760.5443 329758713 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 6853.4374 4319.3834 5010.3507 3214.8797 3214.8797 2437.4179 5012.8007 25028.9963 4962.1235 1696.7132 330996327 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 11651.6844 6015.7193 4558.1594 4673.8711 4291.2564 4291.2564 5596.2055 11105.547 8673.0208 2559.5318 4481.3845 6320.0797 2863.6332 320334003 cda Carbon Cycling Carbon degradation Starch Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 7040.3514 331699711 cpnb Organic Remediation Other Hydrocarbons NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 7295.7588 7597.5352 3304.5489 8743.7028 9018.2424 98117.8869 4676.5174 5816.5385 11882.765 2050.725 2050.725 6658.5238 3613.7246 3272.415 5103.4951 2757.488 10558.3693 9531.4827 7460.5034 2852.3429 3370.8677 4613.3872 10565.8822 10014.7039 345808630 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10048.6414 379008882 catechol_b Organic Remediation Aromatics Other aromatics Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 9968.9878 5914.937 5612.0342 3593.0764 12675.4104 5836.8406 5836.8406 5549.9173 11325.139 5019.9551 3397.6708 256378879 chnb Organic Remediation Other Hydrocarbons NA Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 15839.53 37726835 dsrB Sulfur sulfite reduction NA uncultured prokaryote 8555.3549 4476.3294 2026.0791 2026.0791 333396735 badh Organic Remediation Aromatics Other aromatics Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 1163994.3536 312742.6677 5600.7799 1570.267 115525715 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 8359.1942 2665.7168 9671.7651 23091.8921 5906.996 8106.7885 3278.3568 74420655 ppx Phosphorus Polyphosphate degradation NA Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 7065.1743 4380.2143 234421.3432 4439.912 4439.912 5688.2224 4044.6949 5307.2449 9501.4495 4939.6382 2558.1248 3545.2535 323365690 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 12662.7445 3738.215 6851.7073 2727.9487 180365.7033 6405.3184 5790.7167 6183.1899 5690.4337 5690.4337 4527.8947 9251.625 5174.0842 3117.7098 4309.1221 16890.3827 2148.8918 10378.2485 6505.9182 8116.4569 3604.2044 2233.2987 4777.3273 375159920 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 14304.0375 409022558 bphF1 Organic Remediation Aromatics Polycyclic aromatics Dehalobacter sp. CF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 14455.5071 1689.9389 139003429 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 14091.8809 3029.1952 4169.9463 105776.2424 5181.9593 2214.4983 2214.4983 3060.4562 8455.9655 11888.9084 6737.8988 7379.3087 2543.9402 5189.2475 9823.2268 5351.3346 3751.0795 3479.3958 2444.2819 332666915 pcag Organic Remediation Aromatics Other aromatics Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 11110.1955 71263.8494 3816.3607 1986.4158 1986.4158 5760.4491 5950.7485 4974.0869 217403337 hsp90_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum CCAP 1055/1 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum;species:Phaeodactylum tricornutum; 9759.3013 4463.0759 254510881 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 13001.4019 3727.695 3743.8832 2628.7028 2628.7028 5974.0079 2669.9906 6402.3352 354953554 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8090.4473 4535.1022 2501.6912 3380.4953 2699.9031 6689.7053 4817.011 4449.7784 4983.2741 2236.052 3761.79 6589.0299 2294.0899 5246.4942 5859.2621 2479.1506 4252.903 323494270 chitinase Carbon Cycling Carbon degradation Chitin Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 7412.3307 2006.7873 2006.7873 238884201 amyA Carbon Cycling Carbon degradation Starch Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 1552004.468 320156064 chitinase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus MO6-24/O superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8115.7326 3479.6438 3961.7383 2521.2622 2521.2622 3210.6831 1974.4499 21117.3051 320534420 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 171 str. F0337 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 171; 8451.5494 4647.479 6535.0799 3744.7197 7082.537 14859.6658 14833.9661 8206.0039 8206.0039 8406.6967 21166.9615 11507.4011 7187.5837 6382.0276 6254.0374 13345.3247 4853.4445 5019.1594 2954.8656 5395.6082 2502.0883 5278.3641 355371434 cda Carbon Cycling Carbon degradation Starch Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 11167.3929 5246.9483 2271.0252 5061.2306 4784.2822 2401.6016 2401.6016 3101.1895 118472063 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 11687.1147 3726.3245 85374269 B_lactamase_A Virulence Antibiotic resistance Degradation Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 7125.2654 194621.8585 1985.7229 111370.3029 7738.2176 5569.9036 2192.9352 5772.3116 25059.1801 1773.965 4108.6998 5809.1903 205374455 pula Carbon Cycling Carbon degradation Starch Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 7562.6854 35212689 PRK Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 8651.0634 7500.9744 84778331 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11715.0977 26700.9982 4740.991 284448020 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 19423.5337 13301.9074 9650.7695 3451.8862 91033.8996 2961.8131 2961.8131 6991.1279 2940.9804 4821.8892 206576715 pcag Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 10886.5149 6884.3913 3317.845 3928.9048 2673.1058 2673.1058 2576.5139 6752.8333 4969.0582 3563.0178 344689996 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7098.0054 74499.7015 4333.7847 3388.0619 3388.0619 4015.5216 7544.6535 5291.7299 1785.047 12964194 pme_Cdeg Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 8115.2557 270210916 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 23144.6135 3979.5069 4139.2688 6013.2847 3697.3929 3697.3929 7626.4725 4931.8288 20120.1612 4589.7027 6750.0854 2510.0908 9659.7307 5257.3108 5750.5745 29652454 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27732.4082 4999.2152 25129.5232 3701.377 8052.3316 5318.7837 5318.7837 3123.128 6083.9902 8680.6845 2232.1479 3486.2751 4777.6246 115607477 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9711.1453 2072.6764 1885.4304 3477.5877 4359.2621 2098.6392 2098.6392 1874.3879 290469667 amyA Carbon Cycling Carbon degradation Starch Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 9542.0468 6044.0573 24517.7355 119183920 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 30605.6114 3633.3373 5069.087 2870.5479 2870.5479 11538.9839 6341.8852 4751.6329 7120.6274 8057.7761 5477.1972 7357.2449 1888.2603 3067.1188 150392259 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 36107.438 3738.0512 148512158 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 11603.3697 4446.0331 2347.5227 3375.7521 6568.5651 4451.1043 3765.9594 338347.9068 11036.9783 6533.8822 12890.1048 5264.1043 5264.1043 3249.8105 9193.5387 7410.198 45918.6461 10990.5389 5108.2179 8695.4684 4432.6586 11510.2688 13736.2656 6129.034 7058.4622 5319.2214 3489.9566 3308.1306 330962069 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 17743.8946 5744.2186 3705.9258 8154.5167 2091.2326 158361.286 4742.6131 315049649 linc Organic Remediation Pesticides related compound NA Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 8165.8941 3907.9419 7439.5112 7439.5112 9433.7665 2652.0418 7593.7641 3211.4986 3851634 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe grisea superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe; 8481.2505 4261.3927 2791.7014 2264.5832 3910.7665 5319.6343 3577.7854 98659.8915 3725.4313 5106.6467 8249.4778 4878.6485 4878.6485 2896.9667 4392.0751 6548.211 3373.8344 7502.5308 8224.453 5959.7885 6551.3554 2883.498 3343.6974 6532.0229 152966388 nitro Organic Remediation Others NA Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 14342.7064 2144.1559 5102.1591 3792.9253 64304.4008 4524.6222 4987.0513 11681.3691 4145.7029 4145.7029 3038.8533 4185.0796 4196.2825 2652.2706 9192.6986 27066.2116 6988.3911 2515.6865 2668.9892 2960.7804 7166.6041 220906103 arsc Metal Homeostasis Arsenic Detoxification Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 13922.4808 227338239 terc Metal Homeostasis Tellurium Detoxification Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 7632.3298 3163.3414 7014.0119 3225.6679 82388.2582 4336.3989 11330.8837 6511.1786 3690.2114 3690.2114 3175.5197 6454.2693 5818.2675 2336.9026 2657.2592 5903.4386 3233.7786 7276.9092 10174.1152 2357.7309 8870.339 3204.9154 2236.2535 16209.16 86574592 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9451.7138 1269107.9 3776.5792 3776.5792 11286.861 6703.3588 315924078 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 7189.444 2040.8009 239893855 gdh Nitrogen Ammonification NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 16367.1711 4104.7239 9621.1561 6552.2772 5337.137 3000.276 6644.3163 11035.7309 5090.4068 2000.3252 241773352 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 18087.8806 3356.767 2762.6883 70610.1841 5265.1494 3558.7174 3558.7174 7351.2579 292212.388 3302.2819 5188.4041 8393.993 6205.0207 9030.0519 2570.628 2876.5151 17279.7091 115417908 fcba Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FG1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 8327.9143 6127.1205 295443730 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7405.3746 37651310 dbdc Organic Remediation Aromatics Heterocyclic aromatics Xanthobacter polyaromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 8896.6424 1938.436 1938.436 6680.4173 2328.8775 8633.1817 7167.2033 2166.8647 19917684 nifh Nitrogen Nitrogen fixation NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 6508.3329 4268.6203 333396904 badh Organic Remediation Aromatics Other aromatics Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 10677.4662 87283020 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 21124.0959 3832.4396 403198348 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 21572.0661 4105.4281 4217.0016 7861.2299 4848.2906 4222.7892 23100.6302 4128.2017 8949.8343 2322.977 3152.5183 238705280 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 10808.1984 27433.3809 2665.537 7253.4875 4288.9784 5243.1187 2444.4165 5365.1087 1646.7173 223690011 arsc Metal Homeostasis Arsenic Detoxification Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 18190.8295 89332504 dsra Sulfur sulfite reduction NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 7077.9138 3981.7586 18884.1531 2995.3377 67525863 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 8511.0782 311777854 ara Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor hydrothermalis 108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor hydrothermalis; 9332.7036 260430839 nosz Nitrogen Denitrification NA Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 15389.3972 8534.9529 2966.512 65637.6237 8256.1763 4737.9374 6646.1804 4934.3604 4934.3604 5794.8084 3707.3959 39433.6305 2801.5466 41663.9135 9421.6581 7483.4803 5617.3115 2480.5264 4021.2376 53756174 amyA Carbon Cycling Carbon degradation Starch Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 6983.6401 2247.2553 4276.4541 13451.1443 86151.4146 5766.5793 5766.5793 5735.8484 15426.6362 16724.9757 2368.752 956189.4243 8612.4056 8241.8844 5909.2598 3103.6569 4130.6044 375752722 cysJ Sulfur Reduction NA Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 11019.5197 377560051 ppk Phosphorus Polyphosphate synthesis NA Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 27556.6607 5366.6974 4551.108 3667.698 123360.904 6552.8095 3402.3676 3402.3676 3693.5016 14297.9191 5431.0678 10762.5361 8160.9984 2642.5455 4237.2678 10434.7037 2575.3608 16010.0786 8379.6219 11550.6695 2117.6732 4459.9232 4121.8034 160917392 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12026.9717 1710.9261 4619.9863 32266.9574 3550.0497 5565.3917 5565.3917 12818.3904 6147.4434 2201.0634 4665.5201 4304.3533 4984.8385 3388.0281 3761.6017 398095458 cmci Organic Remediation Aromatics Other aromatics Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 11185.9044 9549.0312 75468.1572 18443.2477 52412.9346 6339.2251 4196.1484 3589.8394 7218.1281 5014.1992 3590.244 14331093 soxY Sulfur Sulfur Oxidation NA Thiobacillus sp. KCT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 23095.5698 3442.9838 4095.8795 2591.1039 353187923 linb Organic Remediation Pesticides related compound NA Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7135.6216 3349.6597 5788.3628 3807.2291 5624.1248 1909.5722 328452111 glucoamylase Carbon Cycling Carbon degradation Starch Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 7091.6734 302502124 p450aro Organic Remediation Aromatics polycyclic aromatics Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 7818.7988 2025.6688 157804730 aps_apra Sulfur adenylylsulfate reductase NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 9272.01 2482.9104 2997.2702 5193.612 5026.414 4180.3703 2533.156 8813.2459 9156.9074 2821.9595 5986.4041 306517163 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8514.4006 5654.5945 1976.7064 3695.9436 6315.7608 9240.9685 5144.9507 2383.9355 2764.6728 15705.6683 393703417 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 9143.1896 7589.0405 312983963 amyA Carbon Cycling Carbon degradation Starch Lactobacillus crispatus CTV-05 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 22185.0865 10794.1357 3254.7196 2202.7597 15211.3804 91180.1004 4065.4604 7120.9283 16665.7964 5096.4611 5096.4611 2274.7112 8396.2959 11905.4115 5379.5126 4923.2772 3520.6274 4176.5298 3167.2409 392144765 amyA Carbon Cycling Carbon degradation Starch Mycobacterium massiliense 1S-152-0914 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 8132.6527 14401.1512 149939152 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 10248.4405 4545.814 6798.6195 3334.3183 3334.3183 4781.3996 6695.7896 16040.9684 10045.8715 2358.8591 4909.5473 257442683 nosz Nitrogen Denitrification NA Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 9310.4408 12381.1022 2476.4927 5418.1611 2312.6178 126729028 tktA Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9074.3736 5195.1151 2740.1655 5957.76 6326.5767 4776.3738 2802.3912 2656.3277 7933.1862 2601.5761 9299.217 2426.6665 3028.431 2511.1141 325294371 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Desulfurobacterium thermolithotrophum DSM 11699 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Desulfurobacterium;species:Desulfurobacterium thermolithotrophum; 7059.0204 315633676 gdh Nitrogen Ammonification NA Aggregatibacter segnis ATCC 33393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter segnis; 13154.0572 5603.678 2395.4445 5407.4025 109107.8105 4364.8031 7442.3189 4760.8158 4760.8158 3655.9697 8028.6704 8138.6129 11649.6775 3240.9739 295899979 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 18482.0486 5608.7175 3433.5514 8091.9369 3976.387 3976.387 305383272 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 287394.6624 2354.6331 15232.3491 148474800 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 25942.1346 270511551 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 17877.1355 2088.5466 5548.8758 3323.3925 3323.3925 4090.0763 302661451 endochitinase Carbon Cycling Carbon degradation Chitin Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 14450.8149 321163214 ara Carbon Cycling Carbon degradation Hemicellulose Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 10500.4871 2420.4638 3261.4905 14162.361 3673.1971 4040.7431 358449653 arsc Metal Homeostasis Arsenic Detoxification Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 7396.6007 2298.8872 61160.3465 5340.4818 5340.4818 12096.0379 2435.678 1783.7556 2924.447 4022.7968 2345.3812 328455983 amyA Carbon Cycling Carbon degradation Starch Coriobacterium glomerans PW2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Coriobacterium;species:Coriobacterium glomerans; 12257.9791 3472.2935 320105575 alginase Carbon Cycling Carbon degradation Alginate Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 16174.4157 302385893 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 9373.7657 374814614 bphd Organic Remediation Aromatics Polycyclic aromatics Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 37310.7861 6330.0847 2694.5131 2694.5131 169156887 amyA Carbon Cycling Carbon degradation Starch Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 10534.2388 5524.3111 8827.8396 3354.3037 4730.9112 7719.8913 3242.4601 4153.2808 6704.683 6704.683 4903.6537 3809.2216 12779.3144 12127.1401 3486.263 7279.1936 4733.6059 10856.7547 7334.1635 7871.7986 18187.9701 4906.4446 5992.0776 13204.3743 323315666 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 11080.7036 6250.9899 13895.4087 10157.5672 260767364 proO Organic Remediation Aromatics Other aromatics Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 8003.34 4737.9832 2244.8206 2244.8206 189194617 endochitinase Carbon Cycling Carbon degradation Chitin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 12241.7919 10027.2849 3071.5718 3674.8039 5378.7008 2276.4818 6007.1011 2250.2685 7544.7219 5035.2387 6683.927 1707.9385 3599.5159 2131.0986 304561109 phytase Phosphorus Phytic acid hydrolysis NA Paenibacillus sp. CPH-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 21521.1249 10594.5763 3233.933 3703.1349 96725.7333 6918.304 6005.1395 6005.1395 2813.6511 5785.3562 4571.9116 5275.8473 7053.7293 14841.0157 2679.2875 3541.4877 2465.0282 187484397 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6836.8415 16404.0595 4011.1149 3958.5482 5140.9489 3496.4491 2822.2437 3872.6564 2249.7472 189198594 axe Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10369.0245 10787.458 18106.1304 50173.7046 12024.8653 6747.5733 5326.2523 31343.2375 302678391 axe Carbon Cycling Carbon degradation Cellulose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 10822.6192 3720.7325 229588899 cmci Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 13131.6059 2755.1306 4289.5718 308316.9363 4239.0182 8428.7584 3371.8308 3371.8308 5238.6696 4206.0714 4018.0475 5847.8609 8160.1245 6177.5184 1903.828 3292.4629 6460527 arsc Metal Homeostasis Arsenic Detoxification Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 6993.2988 2812.6726 3335.7537 3980.5205 3782.065 1954.7825 1954.7825 2801.6898 4184.6859 3039.1305 7065.1783 7299.3426 4027.3817 8275.3715 2683.1037 2924.2331 4630.7084 216744 urec Nitrogen Ammonification NA Lactobacillus fermentum superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 8575.3238 11901.5021 7345.2494 2587.0313 2587.0313 365879597 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9201.8318 5950.5605 2015.0078 367053813 Sir Sulfur sulfite reduction NA Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 13788.5554 93247.0538 4548.5553 3862.0319 2933.4217 2209.2146 2209.2146 3072.487 5552.0328 12375.4579 5132.8512 2671.6415 6985.1537 4270.1826 7425.3843 2494.2196 2785.0234 2224.4226 317018159 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11342.1434 5095.2728 2556.4455 2951.4193 2951.4193 18274.7725 2438.7966 3011.474 2106.8421 307596193 APS_AprB Sulfur adenylylsulfate reductase NA Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 42521.7519 5973.7274 3515.7744 4006.2431 137724.3188 4870.3173 3070.9761 11415.3573 4677.1331 7152.0933 4406.4306 6743.9527 2999.388 5911.3406 2986.1092 3522.2381 2808.6926 4972.4587 214029233 rd Organic Remediation Chlorinated solvents NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 26421.0321 225139.6284 6888.0165 111024844 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6814.0952 3006.2551 2309.5915 3833.5393 4529.3562 76727.0839 4062.7649 5709.0773 2208.0758 2208.0758 3063.9411 7544.2954 4558.9819 3963.2103 4758.8024 5272.8488 3931.6913 6878.9011 2288.0611 10183.0009 7288.6156 6046.3993 3319.9296 3694.605 3061.4168 2566.2794 325914412 trze Organic Remediation Herbicides related compound NA Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 7947.3899 83188.8022 3039.1457 2402.2518 6783.4013 3871.6032 71134.5494 4963.2594 3994.7058 15206.4231 5221.2703 5221.2703 3967.8389 3357.2401 14944.0651 26002.7653 6406.2483 4284.2889 17256.2654 3738.5563 2561.9077 4795.7692 3476.5929 2125.3482 17193.4315 365418791 pme Carbon Cycling Carbon degradation Pectin Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8168.4274 8875.4397 5515.3202 4116.682 3236.3493 6762.5891 6040.6337 4045.4111 154162853 xamo Organic Remediation Other Hydrocarbons NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7839.6102 118424448 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6990.5794 315655351 terc Metal Homeostasis Tellurium Detoxification Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 27124.8475 269791693 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 8827.9703 3954.0165 2062.7767 2062.7767 238602691 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8391.7961 237858263 GAPDH_Parabasalia Other Phylogenetic NA Snyderella tabogae superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Snyderella; 19937.9756 288348815 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 9365.9056 3139.6855 4467.3254 84599.5465 4137.3764 6553.9327 2352.8691 2352.8691 2757.8724 26601.4124 3807.9048 4461.2044 23190.5184 53904.039 5583.3501 7893.6391 112407.8241 7059.6907 2250.5733 4358.8877 3522.1668 2480.4053 380693629 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 10467.9736 294146631 endoglucanase Carbon Cycling Carbon degradation Cellulose Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 12725.7683 2146.0165 6720.314 3856.9505 5278.6418 4475.1459 3972.7663 6606.6623 6041.6433 327310596 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 10360.0066 58267754 glx Carbon Cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 10349.7752 11658.6557 2246.0058 5021.7397 3869.443 1933.6425 1933.6425 5038.7362 6795.5154 18750.5799 5425.3309 2270.8863 3465.0901 3770.1038 3252.8764 327458959 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK1057 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 14212.9336 63294.6076 3459.5776 2518.4924 379064864 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 11201.1132 2272.7133 10090.2959 46917322 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7534.7372 385182658 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 29331.132 4938.4859 2218.978 5878.8304 3280.2464 175252.0848 5865.0637 32749.7919 29164.9655 11726.7352 11726.7352 3252.1009 10436.9739 2379.089 10907.09 7523.7016 7367.0713 16134.0863 2025.3955 2903.7029 371953945 Sir Sulfur sulfite reduction NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 22233.2979 5829.9549 4256.8958 7493.4024 4757.0444 4828.7115 359253602 rubisco Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 7359.9528 5294.5203 2783.8634 2372.5598 2372.5598 2680.5037 100451.5422 2894.9849 10275.9191 6439.4395 2243.8049 90414448 Sir Sulfur sulfite reduction NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 12627.564 151302351 aps_apra Sulfur adenylylsulfate reductase NA Desulfotomaculum australicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 17763.9784 5802.8216 5409.3637 2087.6453 5062.0922 116013290 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14551.3756 237749445 tktA Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8930.6059 258577563 phospholipase_B_fungi virulence degradation NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 18741.7941 2550.5459 2550.5459 726528.757 76667453 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 11293.8298 133778516 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10386.5293 390448902 poba Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 8496.9197 2492.0876 2702.3533 5413.9161 3053.9591 3259.6639 9250.5885 5343.0879 4539.1428 2660.0675 5116.1093 10532.945 5497.7527 2092.2593 4223.9684 7986.8646 85115055 mannanase Carbon Cycling Carbon degradation Hemicellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 23674.4094 13374.7748 10910.6572 6480.2057 9096.6548 359345052 amyA Carbon Cycling Carbon degradation Starch Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 10361.418 3656.7197 83554.3534 4445.1935 6038.7343 4186.7527 5928.4436 3429.2944 2084.8348 5542.7527 2967.5545 2915.5185 373809476 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9313.4494 11673.4436 57225532 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 7358.9795 3422.1946 66905.0634 15786.5872 5333.4748 5333.4748 194467376 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus reuteri 100-23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 8639.4406 4071.2519 2453.8542 3074.2238 4892.1849 3740.5063 7507.8266 4153.5668 6289.7856 2035.4757 2986.4279 5475.6186 5369.3492 371718789 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 9897.5252 4470.0353 2848.0601 9419.4791 2985.9453 357417852 arsc Metal Homeostasis Arsenic Detoxification Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 15477.8445 4865.2023 37046.2992 5011.1021 4872.3874 15989.0873 15989.0873 19765.4448 3899.7488 3659.6114 6088.4343 6107.0829 90954621 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11637.6177 2031.3337 133576.8095 7147.8753 3301.9616 3301.9616 134142921 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9689.2755 4903.4147 3266.6625 3209.2698 4954.1649 4262.6484 269218198 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 10580.8906 2450.3594 2212.721 3567.4965 4316.4585 4830.1569 91335.462 5012.2669 6191.1604 6191.1604 3254.4558 3479.3104 7129.2293 11450.3222 4678.1476 3877.8512 5088.9941 32834.828 42825.6478 8293.1992 16178.3032 24681.1511 4239.2971 5115.9566 7314.544 5602.812 88814683 ppx Phosphorus Polyphosphate degradation NA marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 21697.3699 2157.1914 29654.5713 35120.6162 3716.507 2209.6137 2209.6137 39910.3895 9213.9901 3266.4744 4640.7653 359781439 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 39914.6938 87162.9916 5612.1253 5240.4095 6625.114 30942.5115 5188.7885 169866037 exoglucanase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 37764.323 6665.9409 5059.1481 156741138 accD Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 12739.9795 4376.0999 2181.175 4599.5962 4554.0399 5726.119 122617.3582 2858.7962 2858.7962 7559.2924 6656.31 7859.6926 3455.4651 13179.9291 3850.2822 15486.3121 33418.8199 6549.7358 3433.22 3292.1139 5405.6377 4879.8757 5369.5469 83316756 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11858.7752 83840591 sqr Sulfur Sulfide Oxidation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 12143.7421 65253.8987 7065.8012 6445.7096 6445.7096 6092.8692 4364.6423 5543.6661 2601.9138 5387.2194 2753.4089 119116122 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 10381.6666 16363.1409 2575.0331 4795.2507 19157.5495 5517.1959 8711.3852 6231.3023 6352.7508 2046.4197 9577.5858 361052733 TIM Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 11768.2368 4885.5606 3275.4771 3548.993 69033.1381 3934.8288 5345.1069 2568.1697 2568.1697 5180.3155 6335.7148 3963.2175 3694.0775 22570.4786 6553.3361 7017.3951 2799.7766 2859.9344 220728491 mannanase Carbon Cycling Carbon degradation Hemicellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 9387.2528 6302.7464 306488259 nirs Nitrogen Denitrification NA uncultured organism 13429.084 2908.5908 5246.9557 86432.7428 2671.4601 2671.4601 2845.8161 7481.1601 4014.1276 10749.9707 2376.8009 7038.5521 2914.6063 5413.4146 3330.8238 3133.8482 353539774 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 15599.7012 349781083 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 10167.8101 4339.6779 5846.4246 2703.8969 3361.4935 2309.3153 3280.3714 335334911 aoxb Metal Homeostasis Arsenic Detoxification Hydrogenophaga defluvii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 8686.6497 7689.7251 8581.1589 3392.2036 5158.0775 343398124 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus constellatus subsp. pharyngis SK1060 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus constellatus; 54527.3431 354564569 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 10453.722 163791450 amyA Carbon Cycling Carbon degradation Starch Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 7213.9112 8521.287 3640.5369 7326.8092 2438.0984 387764729 dsra Sulfur sulfite reduction NA sulfate-reducing bacterium JHA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 12491.4682 330836734 amyA Carbon Cycling Carbon degradation Starch Sphaerochaeta coccoides DSM 17374 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 27637.3885 4272.8578 3380.351 7288.4086 6151.7307 42624.9243 10982.8242 6023.8112 1816.7999 63029764 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11962.7267 18629.184 9810.444 4160.7767 3946.4182 6997.9902 16372.7297 7167.089 11834.5542 182434029 urec Nitrogen Ammonification NA Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 23049.2396 7817.8336 7766.1538 3161.1253 5492.9698 5103.8889 3122.632 126015.9654 7644.2183 8736.3931 17399.4829 9757.2172 9757.2172 2842.5067 9057.1946 7272.0772 4417.7491 2642.6504 4291.8195 11063.8554 5649.5041 13031.4611 8204.8658 9862.2002 3550.3056 4296.3387 4584.0983 3105.2036 218246239 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 11934.3451 5907.8315 2577.7931 8074.9938 3609.5144 3609.5144 6003.096 298262158 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 16998.2668 324966295 nifh Nitrogen Nitrogen fixation NA Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 7161.3063 9635.0583 242265965 rubisco Carbon Cycling Carbon fixation Calvin cycle Thermococcus sibiricus MM 739 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 8118.1032 5252.8351 354584570 cellobiase Carbon Cycling Carbon degradation Cellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 7675.3159 21335.8623 8823.9851 3382.7342 14988.7992 7288.6068 119958728 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 8281.7102 7026.4177 3715.9008 2857.677 5849.6128 4320.4521 7258.435 12993.4283 12993.4283 3354.3232 6783.236 10499.8538 5755.6086 2355.5319 4634.4032 257447322 FBPase Carbon Cycling Carbon fixation Calvin cycle Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 7611.6625 4795.0638 4932.5003 5135.3623 3944.8353 5574.1008 2205.703 2205.703 4439.227 55824418 ara Carbon Cycling Carbon degradation Hemicellulose Gibberella zeae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium; 11085.5776 1063981.3088 3242405 gdh Nitrogen Ammonification NA Thermococcus profundus superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 16471.3963 6054.5218 3679.7975 228743972 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus cereus AH1273 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 13791.5924 3601.0146 59124.9358 3230.601 3847.3686 88280.1957 6412.1701 3494.7108 61579.09 3118.0705 332969565 gdh Nitrogen Ammonification NA Kingella kingae ATCC 23330 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella kingae; 15670.8395 6113.9063 5490.9269 4211.3628 3894.2185 7490.7184 3964.5765 5266.9093 2942.4477 89512870 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8027.7933 3173.1687 2849.4828 3886.9322 94784.4465 3746.2467 4946.3727 2332.3967 2332.3967 3751.3352 7858.2446 5575.4752 7144.2232 5706.2381 2801.9884 2482.7952 6895.2402 3300.7147 9624.0157 7317.2549 2243.6002 3121.5941 4935.4317 2705.1687 7486.9142 89950900 xylanase Carbon Cycling Carbon degradation Hemicellulose Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 18448.7126 3553.4241 112463041 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15843.6559 2516.523 4759.6066 170891.9743 4358.9603 3091.1291 3091.1291 4480.1797 8402.9354 5459.5375 3193.048 3835.4599 8474.0713 4686.0213 17609.3901 19628.5119 33116.6573 7472.2334 4841.1752 109804237 mdlc Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 18945.5942 11521.2058 2187.4232 3730.221 3814.5869 1968.9195 1968.9195 3078.4605 4721.9749 3648.7333 3950.5537 2609.5874 12765.6574 5519.5146 8351.4811 2733.1715 3234.5641 4519.9481 187762323 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 11794.3541 4967.1473 168702162 amyA Carbon Cycling Carbon degradation Starch Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 10669.0418 2533.524 95799.1898 5058.8777 2730.8826 7088.3554 3997.9829 5963.4849 4758.8603 5230.1909 2648.2714 9451.5053 5012.1976 5724.2133 1987.3841 3658.3871 3455.0741 6000.9322 224179407 mg_chelatase Secondary metabolism Pigments Chlorophyll Pycnococcus provasolii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;order:Pseudoscourfieldiales;family:Pycnococcaceae;genus:Pycnococcus; 8188.8049 383824351 cmci Organic Remediation Aromatics Other aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 6967.074 4335.5199 46520015 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8553.8166 4466.7044 3652.8092 3652.8092 5002.6579 11488.0934 8073.518 83643975 atzb Organic Remediation Herbicides related compound NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8890.7788 4727.4392 3848.8904 6244.0014 6650.5262 3598.924 291460209 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 8245.796 149941661 dsrB Sulfur sulfite reduction NA Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 16189.0224 163738738 B_lactamase_A Virulence Antibiotic resistance Degradation Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 15526.0049 10620.1922 2451.4125 5032.9756 4237.9533 3343.4774 8317.5697 8455.1797 215928.9578 16542.3821 14153.2023 7636.2757 4742.7817 4742.7817 4281.0386 21982.7611 29766.8671 7734.7316 3081.6948 7987.7396 11827.547 5061.7917 19044.2554 16212.9493 14190.7974 5048.7371 4959.0051 7234.1059 162568591 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11936.2294 5060.6246 90324453 cysI Sulfur Other NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7549.1435 2544.7213 1636.4404 89000777 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 10154.6679 2316.165 356695999 chitinase Carbon Cycling Carbon degradation Chitin Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 7446.8994 18958171 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 24687.488 5033.9418 69029.2278 8922.4545 2215.1628 2215.1628 6573.3753 6094.8234 5231.7324 9829.3296 6626.0953 371776228 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 6958.0084 3595.9838 4779.3286 3632.6697 65025.9729 4757.065 7572.4069 3024.7409 7679.6857 7399.8864 9596.0421 5290.9496 6369.2039 4756.3721 2382.8065 5829.5687 297548972 chitinase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 7728.1395 8410.4863 9314.9378 13575.8449 4899.7556 2507.3536 46307896 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 41819.135 251486.9447 1961.1978 2726.4553 2726.4553 5153.8542 2299.5904 3207.6165 2047.3471 242132579 arsc Metal Homeostasis Arsenic Detoxification Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 8758.6662 296182208 cysJ Sulfur Reduction NA Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 10250.7769 2343.6615 5818.5588 7743.3393 4156.0818 4271.6546 150266.0921 4627.6334 6820.4718 9699.6087 9699.6087 3493.8371 7142.1313 4497.7307 3958.8776 5969.989 9848.5712 3406.701 5854.7289 11092.6355 8598.2205 5378.8562 13728.0649 2268.3431 4115.6281 7162.1766 3591.7371 146276053 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 36511.1541 2688.7242 2692.4596 4816.4145 4109.7867 10276.243 6731.9228 6731.9228 9478.2447 7457.4497 6976.4946 6844.7729 2801.5671 2767.8149 19349.622 14412.6254 10358.2802 10773.7727 3285.3608 19019.4849 5280.5571 3759.8294 170679805 nrfa Nitrogen Dissimilatory N reduction NA Escherichia coli SMS-3-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 10278.7078 5543.6197 2775.7086 5347.6565 3124.5019 65387.0577 3424.7352 3424.7352 3672.6843 2396.4782 4246.3838 2469.5744 103423.1113 7124.4718 2995.0128 4376.1727 84592.9977 398409746 bph Organic Remediation Aromatics Aromatic carboxylic acid Zymoseptoria tritici IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 14787.4103 4696.2956 6778.3462 3186.1555 4254.8352 2369.1145 78011.5452 6880.194 3710.6653 9564.9482 9564.9482 4076.8465 3504.905 5457.242 5678.4287 4180.351 7429.3115 5387.5522 2231.8153 3114.9422 2124.2419 228276634 arsc Metal Homeostasis Arsenic Detoxification Capnocytophaga gingivalis ATCC 33624 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga gingivalis; 8651.6172 5914.5465 2321.5507 2321.5507 9479.432 186476980 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 12631.6148 6140.7155 3939.3848 10666.5935 4347.7116 4347.7116 2700.5625 44212.2995 4232.0907 4151.9943 396928528 linc Organic Remediation Pesticides related compound NA Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 27115.2448 2281.2201 2996.7965 6040.8914 4183.7814 4183.7814 10279.4122 2821.2824 8114.4963 5837.3127 6611.9527 3593.1642 3984.6929 5227.4097 378819728 xyla Carbon Cycling Carbon degradation Hemicellulose Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 12307.1634 2411.4257 2963.6286 6019.5484 2810.7283 2810.7283 5150.3528 43642.7876 2897.4612 2441.6776 32561.2111 3317.6317 2689.3945 340787265 cmci Organic Remediation Aromatics Other aromatics Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 14198.4938 110286752 tktA Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7218.2183 9367.0537 319942517 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 12037.2923 8865.959 3724.5619 4748.355 3090.5442 3090.5442 7925.5139 7785.1359 17813.6896 7314.6404 2496.0555 3511.2253 3149.1835 334103611 bphc Organic Remediation Aromatics Polycyclic aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 33948.1051 2415.2841 2120.7454 188030493 vana Carbon Cycling Carbon degradation Vanillin/Lignin Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 7596.1296 4075.4921 73067.9106 6314.3959 289615303 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 121072.4192 4529.3267 3147.4838 26287.1849 7110.3592 101574.5316 4518.2837 4785.5868 4997.2989 4997.2989 11054.4019 7013.4261 11661.3836 9337.7885 66381.9777 4614.9366 19608.7269 16073.8477 12292.2954 4043.4919 4988.9137 4066.3294 26563.6593 113728638 vana Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 10578.4834 3644.7318 8165.4462 18073.4533 4495.7922 5224.4338 12876.9938 4421.7958 18503.1721 2106.6405 6984.3176 3950.3656 3511.449 120594350 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 6607.7538 2482.7784 3347.564 1865.1213 1865.1213 3684.9104 336068946 amyA Carbon Cycling Carbon degradation Starch Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 8941.39 6422.6418 4804.4238 3228.0009 3228.0009 960300 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 8293.9007 303315223 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 13765.9709 9842.1303 9842.1303 4295.7917 3062.7573 9940.4367 218777890 linb Organic Remediation Pesticides related compound NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 18716.9982 5114.0626 3629.3981 7539.6338 3544.6285 3544.6285 7378.8125 254028643 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. C3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 25364.3219 304404980 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 8734.4545 153956095 amyA Carbon Cycling Carbon degradation Starch Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 65834.2913 254262222 proO Organic Remediation Aromatics Other aromatics Enterobacter helveticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 8885.0566 379066528 amyA Carbon Cycling Carbon degradation Starch Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 18825.8888 5291.869 4848.9247 288935026 xylj Organic Remediation Aromatics BTEX and related aromatics Klebsiella variicola At-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella variicola; 9474.2055 2544.1336 8929.7215 2373.7666 19552303 hbh Organic Remediation Aromatics BTEX and related aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 23689.6861 3455.4738 3590.8179 3145.6093 10537.3497 30672.495 3701.6114 7439.7442 5234.9848 8005.122 6700.2875 8443.5418 2558.9207 4521.1718 4477.8528 3223.7393 2678.9907 3228.6288 6083.1144 4946.1665 228471264 ppx Phosphorus Polyphosphate degradation NA Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 6316.3431 34961.154 408781123 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 12183.4474 3907.9774 4396.7374 7215.5259 5949.7448 5935.3619 2824.4726 2854.574 2402.6336 14389267 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7649.662 2755.846 2737.5296 4230.7148 4013.0726 94723.6234 6154.0624 27321.0479 3680.162 3680.162 2708.3286 7198.3721 4911.5435 4897.0088 2261.5958 5414.583 2376.4786 11508.5961 10323.2361 5026.638 4411.6098 3560.4495 4400.0699 2809.8391 29290.5732 270047920 phenol_oxidase Carbon Cycling Carbon degradation Lignin Cerrena sp. WR1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Cerrena; 14840.204 2922.6885 123381.2085 7904.7018 14227.3222 3860.5081 4192.0738 3660.8002 5338.7055 2787.7983 311329041 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 11905.728 16187.6225 4578.9351 46520007 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19058.0379 4306.968 71841.9189 5404.0633 4524.615 6420.1299 6353.7744 6353.7744 19109.3221 3883.1347 10580.402 4549.7905 26110.0553 7359.3619 12865.2377 6169.9898 10533.2612 11108.4367 303327152 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8428.1785 2173.4285 2173.4285 12301.8024 302574090 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor obsidiansis OB47 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor obsidiansis; 19850.333 7258.2802 63427.4623 7257.9405 3339.2308 3339.2308 5841.5677 4719.5536 8412.1917 6398.0219 189209423 pec_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 36706.5215 4741.9203 114740151 mer Metal Homeostasis Mercury Detoxification Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 9708.0934 2803.4057 3456.4475 1905.9776 1905.9776 7242.8778 4560.1365 4808.0992 2441.108 9914.8336 13561.4501 8505.8743 3486.3106 3710.8986 3341.5491 2498.1101 5377.577 167583695 arsc Metal Homeostasis Arsenic Detoxification Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 8080.7908 2609.6442 53128.6034 4994.5964 5436.8764 4191.2493 1922.9437 1922.9437 21054.8074 6552.8606 4245.1947 723780.4422 4664.9167 5004.5207 2959.8762 4483.1012 2025.9225 4062844 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8402.0601 149805380 alkb Organic Remediation Other Hydrocarbons NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 10965.8684 2510.3439 33288.8861 2907.7707 4126.8134 4190.4731 2400.9538 75728.6098 3724.3986 3388.79 2633.0763 6952.2297 6360.7197 6683.7866 4834.5788 185851.4196 6228.9371 37003.2421 12157.1643 6569.0792 6955.852 2383.55 3805.2718 137746.1332 9173.6376 5920.7811 140713821 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 9754.5999 154154495 alkj Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 6944.6764 2034.6063 6295.2986 3941.46125 2327.1163 9943.1201 5853.5644 9395.8347 2458.09845 5775.0735 8064.9941 335424229 arylest Organic Remediation Aromatics Other aromatics Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 8157.9988 8347.6751 16262.2074 5250.3488 6739.1083 2027.5406 60476253 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 24315.7181 2201.6154 15460.037 64179.3582 3800.7198 5098.1271 6572.3588 3642.4539 3642.4539 5988.8255 4407.1995 30955.2482 8817.665 8216.8171 6516.4002 3108.8003 37726823 dsrB Sulfur sulfite reduction NA uncultured prokaryote 13151.7959 19157.4545 19157.4545 302683448 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 14824.9316 2427.0201 4990.0459 2347.9276 5649.3578 5649.3578 22561.3388 65296.2177 2887.3002 39277.1944 6500.8469 3976.4289 7237.6526 359306200 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 6692.0075 20875.0161 5531.1281 12003.7948 388256067 ppx Phosphorus Polyphosphate degradation NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 10621.3256 9287.1345 8281.2259 4346.0322 4560.2517 8000.4551 8402.5179 5097.2046 5156.887 3996.1762 10108.665 5515.91 4686.5271 3406.2794 124271105 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7465.8633 334142617 bphF1 Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 12170.5928 3196.8543 3607.2261 4227.6727 4227.6727 5294.3861 29824645 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10449.7195 402510190 bphd Organic Remediation Aromatics Polycyclic aromatics alpha proteobacterium IMCC14465 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 29836.3583 384371434 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc1 superkingdom:Bacteria; 8795.1993 343869.0827 3107.0946 4648.5633 6378.03585 6378.03585 8557.1465 6175.8168 4766.7532 4603.87885 2522.7265 4108.2086 283457613 amyA Carbon Cycling Carbon degradation Starch Rothia mucilaginosa DY-18 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 8928.3771 2894.9799 2959.034 27263167 amyA Carbon Cycling Carbon degradation Starch Bacillus ohbensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11929.0398 4043.2705 5182.712 2836.0524 2836.0524 7280.7712 330375592 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18926.8156 4856.0459 13534.5646 7033.7487 2024.0828 4321.2536 379063569 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas stutzeri ATCC 14405 = CCUG 16156 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8129.0778 5395.2163 8066.9424 6083.6548 3311.4446 4256.7262 5367.4323 9452.4227 5980.3177 9547.7183 9839.0206 5219.344 3911.0361 7609.8088 2447.025 12608.528 8879.7876 7592.6074 3187.2701 7821.439 5516.5175 3215.8366 8448.1576 34596820 mmox Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 15514.5639 6998.6676 343775845 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 8290.2924 2794.0117 15974.4369 4692.5872 4136.8206 3463.9795 7153.2945 1918.7098 1918.7098 7727.2682 2710.1811 23279.5964 2509.9446 1996.3978 10232.037 6477.9354 5224.1235 353197104 b_lactamase Virulence Antibiotic resistance Degradation Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 7487.5577 16525.1927 70148.6827 2355.5215 2355.5215 5846.7105 5609.4243 325208140 cysI Sulfur Other NA Neisseria meningitidis NZ-05/33 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 17005.324 296023298 mer Metal Homeostasis Mercury Detoxification Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 8171.1595 4718.5533 1951.2905 1951.2905 2683.3743 4585.7192 4949.7638 83841443 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 12290.2886 2813.6731 2202.7435 3040.6265 3172.2119 7987.3603 89006.6153 4566.8534 5606.781 3699.13 7249.146 4531.957 5737.8259 6944.7657 4560.9315 3029.0531 2589.5464 6699.2428 12179.0157 6738.7759 8172.8508 2945.0661 5975.1297 4554.361 2597.6176 6822.5234 78221401 mer Metal Homeostasis Mercury Detoxification Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 8390.7562 8174.1362 2942.4771 10854.3296 3591.1489 1017083.8677 3406.8 29562.34 5470.1467 4456.7628 4456.7628 5824.8823 4689.5459 3123.3423 5330.6874 2774.0126 10120.968 8454.5606 2769.0452 9145.3146 374315091 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphaerochaeta pleomorpha str. Grapes superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 7914.2602 4850.0697 4552.766 3955.0095 146086.3593 3751.0054 2692.6773 2692.6773 2914.3836 9031.5368 5202.8024 5235.3477 5097.4655 9153.7968 3813.7026 10402.9953 2572.9131 6249.9394 9128.2301 3233.4408 5061.0973 4821.8207 2544.6703 9182.049 392331123 amyA Carbon Cycling Carbon degradation Starch Streptococcus canis FSL Z3-227 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 53704.3708 5443.5582 21555.7121 123654.615 2263.9087 3594.3373 9296.0081 2880.5012 86335.4449 5440.7746 14002.5637 19024.2691 26624.322 26624.322 3060.7151 11169.116 7213.6751 12691.7707 9505.7523 12122.4496 6790.3739 8510.9333 9425.7733 10226.3681 31807.9045 6521.266 4158.8484 4631.8196 5542.3201 20102.7031 262352243 cysJ Sulfur Reduction NA Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 22184.3838 3907.1104 29867.0585 4967.8204 4540.2244 4660.1304 5427.3541 3933.5066 8046.9681 6109.6809 5288.9526 10447.3744 4294.9214 3277.4957 9230.5741 3165.2555 12885.609 8154.3478 6137.5895 3089.8387 3733.4993 4106.6163 3686.9346 8311.2151 291545037 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 12011.838 5850.0905 119720359 cda Carbon Cycling Carbon degradation Starch Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 10135.987 9715.4153 321260126 glx Carbon Cycling Carbon degradation Lignin Cryptococcus gattii WM276 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus gattii; 18131.1224 7251.4619 3335.5895 75663.9841 4820.0178 10000.4892 4693.2588 4693.2588 7398.8113 23491547 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. TH2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19011.2551 58673.4845 6630.195 3595.1599 3595.1599 374702222 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15366.468 19264.6494 371445138 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 18574.9625 2737.2499 2159.809 2159.809 11875.8245 1707.8482 8931.2526 2513.9217 32307941 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10795.7631 293393939 linb Organic Remediation Pesticides related compound NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 11506.909 90569471 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8173.1436 52081406 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 18910.5974 2264.6343 3179.8401 5912.2188 8335.931 7443.1355 230363.2776 8539.8804 7981.7981 9202.717 5026.2652 5026.2652 7289.9455 6424.9415 4619.6676 9678.7834 3361.5437 3925.2853 7419.1588 4244.6452 13225.2857 20139.9775 10479.205 3011.7848 10871.6549 6294.5734 11047.5999 407700496 nitro Organic Remediation Others NA Alteromonas macleodii str. 'Black Sea 11' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 7818.2865 6588.0563 2782.3395 2782.3395 5469.2828 5551.0585 2934.3477 393183524 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8631.5269 189345569 fccab Sulfur Sulfide Oxidation NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 6542.4449 5972.4772 11102.9269 11102.9269 333973901 aps_apra Sulfur adenylylsulfate reductase NA uncultured Desulfoarculaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfoarculaceae; 9205.9933 2854.206 5392.298 2212.4529 4159.0564 219939234 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11471.9391 6612.8477 2571.6426 4436.8943 5138.5906 3923.2942 3923.2942 6584.9009 5666.9533 3268.0923 14833.7646 2480.8305 9845.0663 7662.4176 7522.2669 2777.6962 3406.5856 3052.2234 392625461 amyA Carbon Cycling Carbon degradation Starch Bacteroides caccae CL03T12C61 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 11597.3924 359426746 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 10826.8167 2940.4378 3336.3257 4889.802 3045.4321 222386.8818 7325.3514 3993.8922 5952.0251 4465.9578 4465.9578 3314.6562 6718.2872 5270.787 5671.9907 5412.1159 3497.4186 4539.2125 6625.4264 5693.34 8749.4002 4429.1112 6432.787 3286.65 13886.5186 288570220 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 18650.2064 215460737 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 15762.5617 5050.5931 5296.7187 73761.5403 5694.5654 4972.2487 13073.5103 6596.6838 7177.9843 3864.588 4213.1996 2610.4565 46810969 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 17270.6751 4030.3128 5573.7447 4788.8279 2824.0473 3110.8162 334339402 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 16985.4478 6628.6185 2999.2077 4269.883 84517127 hbh Organic Remediation Aromatics BTEX and related aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 7865.6484 5059.4673 10905.1405 6050.4148 292833569 alkk Organic Remediation Others NA Streptomyces sp. e14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 10219.0894 5227.428 2980.4436 8977.0474 5801.7385 5421.848 4246.5623 4246.5623 7677.6788 6245.2075 5614.7755 296849733 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 12622.3048 4373.2573 3762.6986 3762.6986 32460.8726 6233.146 4727.3683 83960.1118 3266.9187 14884.3722 10316.1767 297148486 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 7714.214 156107865 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 7499.7108 3122.751 2758.1873 4249.6561 102709.0132 3657.7622 7836.481 5800.3986 4358.4002 4513.9704 7284.1154 2278.7004 2829.22 7191.3176 2154.539 10161.561 6999.5415 6487.318 2285.7229 3704.3245 3848.25 3716.4389 6993.0668 307595876 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 6980.1395 3998.6105 87204.9408 192764222 nifh Nitrogen Nitrogen fixation NA uncultured prokaryote 10318.8857 2689.0967 3704.9215 3693.0982 3693.0982 5734.0762 1587.3428 3089.4551 323359736 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 7232.3791 18098.222 4253.3291 4253.3291 315470499 nifh Nitrogen Nitrogen fixation NA Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 7778.4304 5658.7161 2974.0514 6404.1928 4384.9735 9189.2841 2406.1745 10123.3289 3407.7192 3835.6909 10675.4132 300666136 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 23079.4005 7073.8586 22790.766 11747.1156 2203.6144 2203.6144 9545.3374 8251.3888 2575.1679 47602.7226 9496.4512 220934907 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 8666.3415 4958.0751 17699.3221 13584.6097 120715.0666 5237.0065 4483.9284 4732.2313 11035.4305 6289.3727 8654.6028 3063.1471 2859.3686 7231.0179 20500.1869 11077.7486 6634.4088 3302.037 3486.576 4916.7257 47522.4562 229816957 arsc Metal Homeostasis Arsenic Detoxification Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 17210.5553 6606.7143 27003.7658 2676.2056 6334.6491 81983.7414 5550.9779 8199.9148 8199.9148 10560.2229 3959.1777 38518.5055 8886.4128 2357.2446 6652.778 2407.2514 7474.5743 5968.1637 2060.6916 2892.9542 10775.3017 88865040 FBPase Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 38364.2227 7355.7767 3482.1542 92764.6881 5243.294 5162.2325 8060.1501 4549.6924 4549.6924 6239.1408 4189.0491 7952.0405 13713.5665 15764.8329 7799.5525 7125.7926 3312.7217 3088.3292 152967510 ara Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 8843.6969 22840.4585 6436.1705 4734.2849 4704.043 5197.4143 8153.3806 4188.6184 36884.0792 36884.0792 3786.7774 12770.442 4963.0322 506271.5632 5535.1749 6720.8097 20009.209 12638.9219 15002.7641 10165.2684 4122.0402 3442.5149 4261.4195 4334.6493 6612.4043 55978150 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9512.4835 4081.6625 3314.0958 10441.0757 1603.3186 306846332 bphc Organic Remediation Aromatics Polycyclic aromatics Brucella inopinata BO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella inopinata; 10321.7089 371452932 terc Metal Homeostasis Tellurium Detoxification Comamonas testosteroni ATCC 11996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 7521.8812 344305160 tfth Organic Remediation Aromatics Chlorinated aromatics Spathaspora passalidarum NRRL Y-27907 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Spathaspora;species:Spathaspora passalidarum; 7734.8846 18837.3434 302406372 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 9348.4516 6489.6146 6995.5093 2985.5409 3430.9 5458.1595 1698.2469 12343.9481 49631.2448 330809805 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 12894.2562 3472.5347 6636.8754 3426.414 3426.414 3237.6426 5590.7302 4301.1436 8110.872 5257.3669 1767.082 14056.4271 74038438 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8477.9854 25057.2524 3561.6648 9278.5651 5084.7519 5584.9725 8335.2059 310758424 cysI Sulfur Other NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 11174.1819 4837.3803 3724.0537 3198.2445 6801.4111 8486.6559 5002.4725 3345.5233 4947.5588 2491.7308 6316.0243 2796.1285 2532.9406 3870.6247 4483.7678 302404838 chnb Organic Remediation Other Hydrocarbons NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 9056.5457 69806.1352 28759.381 4452.6197 6231.9187 4467.1612 4467.1612 4522.2676 3308.9305 6641.7847 4361.4755 302915477 glucoamylase Carbon Cycling Carbon degradation Starch Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 7770.5514 422446.0844 300311817 amyA Carbon Cycling Carbon degradation Starch Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 12527.996 4660.7538 12979.3901 8456.9634 3122.1815 22294060 Sir Sulfur sulfite reduction NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 8804.9283 13447.2631 2765.6237 398220575 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7106.0926 11734.4187 34519.1669 5420.7551 2845.3304 88866429 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11134.7615 56841.4859 3183.9798 5529.4948 4996.8981 6261.391 6107.2899 5388.5429 2172.4506 3484.7642 3614.8787 385767829 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8091.3262 6691.1282 6549.2633 3888.5407 3993.9481 154498962 ppk Phosphorus Polyphosphate synthesis NA Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 7048.3516 160354888 amyA Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 20167.8412 4219.3931 3168.7595 4205.5398 95755.1296 3968.7362 7721.3034 7721.3034 7905.6418 5295.6744 5157.0912 4847.6725 7505.5874 12087.386 6069.3784 7874.5485 2921.9044 4206.2721 3483.5608 5370.9797 298290437 FBPase Carbon Cycling Carbon fixation Calvin cycle Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 11084.505 4516.2514 5533.3466 2413.3923 2490.8119 82945321 tktA Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 11449.23 2505.5479 3039.4488 80713.449 80713.449 2498.2236 450849 amyA Carbon Cycling Carbon degradation Starch Streptococcus equinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 12073.961 114328063 FBPase Carbon Cycling Carbon fixation Calvin cycle Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 12597.3897 3623.5158 17998.3456 2758.4957 26332.6531 5100.9019 102182.1944 5267.9356 13773.1159 13773.1159 11207.1159 9149.7529 4366.7696 2888.466 2414.9309 12009.0057 2890.9149 7688.626 5027.5701 7242.8306 1886.913 4208.8804 10632.6984 8647.8733 68164636 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11308.8773 3565.7517 2217.9865 4920.0052 3605.7745 8881.6916 9571.0849 9571.0849 477478.7337 4703.5792 18849.1087 5171.9218 5594.5053 7537.8118 2400.5837 11605.7962 6395.2207 5872.509 6546.1762 4295.996 13335.6246 2693.5829 6165.9543 48527114 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 31813.354 3594.9211 4272.7815 3294.0851 5783.4708 32633.9094 32633.9094 3154.9966 2439.2164 5821.8046 3378.2996 5342.478 2844.919 4756.9784 291197164 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9606.1238 2844.8111 2687.8174 5010.03 88703413 mer Metal Homeostasis Mercury Detoxification gamma proteobacterium KT 71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 8591.9869 6897.4946 9305.0608 2645.9472 329670864 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 143126.8025 11793.0564 6372.2405 2366.1008 3593.0739 1909.6694 1909.6694 8384.4546 8311.5616 5648.8194 18060.7026 2503.5444 6175.916 192764328 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 28574.8859 2493.5494 2612.1194 10367.8118 5279.1142 110638.3171 6896.8174 2389.9193 2389.9193 11967.3561 46827.1293 8264.0392 6306.6836 3411.699 7937.5344 4821.8608 11838.0888 6103.5968 7321.1172 2929.5084 5091.4353 3382.3975 5470.652 7560.8726 237684609 aln Organic Remediation Others NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 30469.6277 4986.6033 2795.8737 3011.6519 4329.5306 2862.787 142807.1181 357969.1056 6867.2731 23393.008 11113.3686 11113.3686 2906.1758 8058.0861 6791.8819 3356.77 12812.2914 9003.8433 6913.8096 10090.3678 2092.7876 4624.2733 5092.6125 56787883 pcpe Organic Remediation Herbicides related compound NA Novosphingobium subarcticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 11665.7627 5700.7813 28327.8336 2549.7081 78610570 chrr Metal Homeostasis Chromium Detoxification Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 7619.1669 319926478 xyla Carbon Cycling Carbon degradation Hemicellulose Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 7375.5858 6747.132 8029.6921 4084.1978 5542.8778 3137.7965 3685.9526 6274.879 2848.8503 4532.1001 159045077 ophc Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 11028.0009 2664.3518 357582439 ara Carbon Cycling Carbon degradation Hemicellulose Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8216.6254 2536.9297 2536.9297 5369.2814 4643.2779 4361.8083 9389.0884 3651.3515 99083157 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 14458.7667 7367.0832 65989.1813 6950.8034 3366.8822 3366.8822 7067.2377 3994.1368 5791.5356 53805117 nirb Nitrogen Assimilatory N reduction NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 8420.2592 59952.1763 4568.6591 6232.3218 4384.3719 6106.7229 2222.0814 4623.4698 2706.7361 4619.7083 5424.2294 82698269 nifh Nitrogen Nitrogen fixation NA uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 22238.9372 38432.9796 2398.5991 2398.5991 7340.0606 8765.8808 5737.9796 7803.5955 4262.4308 4238.7502 281317833 beta_agarase Carbon Cycling Carbon degradation Agar Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 13363.3567 4300.5314 4328.7111 32925.3982 4967.9536 3967.4873 339442250 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 8277.8378 4830.6717 3235.3351 5251.7805 3160.6893 168430.8659 3694.8124 5251.6767 6831.3301 6831.3301 5342.8868 3187.8745 5590.65 3398.3631 2651.687 9607.2955 284036565 nitrilase Organic Remediation Aromatics Other aromatics Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 12046.1097 8079.7543 2820.9344 4242.0231 4325.8996 5962.4168 8746.2209 8746.2209 2422.8654 156600886 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 16901.8258 15074.6583 30624.8604 5694.2748 5049.3117 9503.9588 3453.023 7793.7598 4073.9752 8887.6814 1914.5184 3787.0731 357224640 linb Organic Remediation Pesticides related compound NA Marinobacter manganoxydans MnI7-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter manganoxydans; 7320.9839 212704750 ppx Phosphorus Polyphosphate degradation NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 10185.2048 9399.3819 5653.8779 9585.3645 6283.1797 19568.3447 19568.3447 2776.1181 7357.6088 5858.197 9955.3124 4663.2169 7144.5958 6532.4057 4880.5043 8133.7934 9737.4171 6631.8772 5360.3147 8029.1281 4570.9061 166200714 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11053.4306 90196623 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 9106.2526 11972.3052 9256.8234 4101.7914 355360575 terc Metal Homeostasis Tellurium Detoxification Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 10081.5523 2167.8474 4739.7922 5012.1414 4576.6767 4406.8948 7913.1412 2610.5682 3521.9559 2775.8731 2117.7624 159891995 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 16680.3559 23395.0515 149189628 arylest Organic Remediation Aromatics Other aromatics Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 23243.8727 3130.78 28301.7045 4695.0449 3923.1045 4588.8276 8575.524 94004.9305 6079.1452 6975.7619 1844.8082 2814.5997 3232.8625 2228.9299 340513907 nagg Organic Remediation Aromatics Aromatic carboxylic acid Trichoderma reesei QM6a superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 9072.7126 2317.2923 2459.652 5019.2694 4339.9925 12383.1643 163785678 ppx Phosphorus Polyphosphate degradation NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 23536.8828 9166.2069 3391.2623 91348.2453 3552.0102 5400.2799 13420.0241 6305.0933 6305.0933 5907.8899 4358.7646 2672.8383 9065.0822 4015.5581 5375.26 365900074 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7129.629 363984374 ppx Phosphorus Polyphosphate degradation NA Thermanaerovibrio velox DSM 12556 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 13547.2539 42459.1608 2558.7181 5659.3183 78840.3123 5335.0628 2979.9905 2979.9905 2970.3253 6623.9127 197975.5227 6149.6621 4224.4705 8577.7972 2303.5758 9427.2972 616563.5924 8477.3834 3593.9522 3985.4449 291439993 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 9230.2902 2407.7519 4319.2798 2286.5722 2286.5722 3455.2907 3792.7923 9174.337 10392.5759 225791589 chitinase Carbon Cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 66214.9338 2253.2312 4045.733 4485.67 49311.5009 119598.3838 4930.6095 2712.8346 2712.8346 4242.7595 9749.0178 2634.171 3116.5312 10663.4422 9771.4126 4167.9587 7725.0967 3791.92 5795.4163 5595.0705 323471415 nahf Organic Remediation Aromatics Polycyclic aromatics Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 10827.6258 8275.4207 3050.535 4286.7247 6885.6681 229874084 ara Carbon Cycling Carbon degradation Hemicellulose Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 10289.2212 242799750 badh Organic Remediation Aromatics Other aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 27064.5868 55845947 nitrate_reductase Nitrogen N Assimilation NA Amphora sp. CCMP1405 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Thalassiophysales;family:Catenulaceae;genus:Amphora; 115180.9248 90416263 bphF1 Organic Remediation Aromatics Polycyclic aromatics marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13901.6201 112280450 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7457.9958 2819.1123 153811205 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 21217.1312 713796.0776 325072727 nitrate_reductase Nitrogen N Assimilation NA uncultured Peronosporales superkingdom:Eukaryota;order:Peronosporales; 8048.5198 3724.5212 27950.7574 4404.9493 2643.0569 5247.8927 2140.0722 12822.8502 19751.9616 380682270 terc Metal Homeostasis Tellurium Detoxification Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 10258.2721 5559.3279 4646.9843 7203.6299 6795.8863 7431.7338 7182.6623 6554.1304 5891.5215 5192.662 2774.1952 4689.9365 199652761 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10707.9665 21150.1775 2192.5426 3815.3221 73028.4505 5365.4728 2970.9058 2970.9058 6489.9311 6892.4982 1990.9382 3048.1657 11497781 nira Nitrogen Assimilatory N reduction NA Archaeoglobus fulgidus DSM 4304 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus fulgidus; 12578.6836 7213.0401 2815.7061 78184.7694 3624.5145 3937.5546 7084.2733 3256.4716 3256.4716 7202.1542 4976.5144 2849.1719 7578.6615 9567.2478 3966.096 5887.8653 2107.4517 3154.2596 3241.9312 74317327 dsra Sulfur sulfite reduction NA Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 7602.9 15145.5828 76170.4347 7203.0739 18938.2586 7832.9907 2658.9971 17675.0197 14261.414 10881.7065 13045.999 2865.8324 3771.6946 56695892 SoxV Sulfur Sulfur Oxidation NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 10850.2602 8814.8642 3516.4218 5233.1569 3109.4211 5747.1841 2937.9313 5143.6167 6088.6093 2886.6562 2886.6562 6289.5431 12117.6623 6114.494 6691.5499 14366.4572 2687.9886 14358.7094 8529.1822 12378.5844 5423.2409 11401.682 3325.6676 4466.1449 5044.9448 319415011 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 25947.1228 3656.8678 4632.1673 6698.1675 7159.736 5818.927 5546.594 5466.1726 3063.3892 225572643 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 472294.2954 7637.4558 6954.8351 3887.407 25115.9674 2908.1969 10342.9811 4004.8728 6554.897 3134.83 14918.6076 11638.8238 12281.5256 4790.1275 6567.1804 3316.9594 18993.8442 7391.6482 261196456 chnb Organic Remediation Other Hydrocarbons NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8702.2742 5200.5838 2475.9895 2475.9895 2384.6741 160916231 amyA Carbon Cycling Carbon degradation Starch Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Eubacterium] dolichum; 11680.2801 291519547 ppx Phosphorus Polyphosphate degradation NA Butyrivibrio fibrisolvens 16/4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio fibrisolvens; 7928.0589 283779300 terc Metal Homeostasis Tellurium Detoxification Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9740.4378 3992.8013 332377258 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7632.1277 4491.4309 3811.7218 4273.5964 2404.5666 2404.5666 4707.8554 4620.9309 333823700 amyA Carbon Cycling Carbon degradation Starch Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 7396.5186 12216.4708 39684.9088 6201.8752 223524549 mer Metal Homeostasis Mercury Detoxification Ricinus communis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;order:Malpighiales;family:Euphorbiaceae;genus:Ricinus; 10782.9877 2195.6771 91699576 xylc Organic Remediation Aromatics BTEX and related aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8970.7678 5018.6463 3362.5096 3407.2546 5635.232 3972.7793 70522.4221 5012.1431 3219.9696 3219.9696 7431.9467 4110.2726 8173.5005 2884.9113 2708.0649 9614.139 11022.9469 13170.9457 8743.6554 3336.7236 3687.4546 3725.4251 330431544 tehb Metal Homeostasis Tellurium Detoxification Gallibacterium anatis UMN179 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Gallibacterium;species:Gallibacterium anatis; 14890.0243 3592.2104 3592.2104 7985.162 4235.8192 3321.9158 294139793 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 59553.0139 5277.7043 258511920 ppx Phosphorus Polyphosphate degradation NA Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 11615.2707 4573.5856 5983.1365 5264.0045 3133.6143 146188544 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 30179.8181 7394.7146 6831.8897 6831.8897 3742.5652 5687.5731 4030.9935 3709.0579 3918.3345 2074.7104 4939.3293 160917613 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13052.1266 85673.2606 85673.2606 3615.4166 3629.5031 3222.256 119504647 rd Organic Remediation Chlorinated solvents NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8350.7786 374997709 chitinase Carbon Cycling Carbon degradation Chitin Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 11084.9919 6890.6252 13101.0718 6455.7105 5537.3097 8301.9681 4855.8113 229588129 urec Nitrogen Ammonification NA Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 31716.5484 4806.4307 4749.9593 4749.9593 3526.5772 4587324 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 15770.3661 5349.5178 10485.0076 5104.1078 79926.1122 17111.9503 12953.5464 10347.1432 5330.6827 3646.8642 4969.5097 226358396 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9734.8762 3836.6144 74657.9794 12828.8819 3935.1177 2681.8076 2985.7594 4222.2437 309394144 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 17608.9579 2126.3722 2033.3153 2033.3153 6471.5588 148243562 urec Nitrogen Ammonification NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 13134.03 5967.1074 4349.3731 9755.1892 4544.4349 20248.0674 7480.9757 73215.7997 5861.6389 7262.0692 9105.2399 2630.3692 2630.3692 7421.7126 6622.1097 3180.3175 13629.8122 9893.5052 11283.5951 6260.1702 8635.3186 3370.0087 4608.2673 297559557 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 22031.0162 5049.3649 10820.1268 6745.4793 4099.1149 74815.4544 3896.4052 7365.348 6348.5204 6348.5204 4030.3602 16255.3612 5099.4284 5581.3876 5181.8822 4115.8572 2840.4068 4011.4326 9811.6321 12445.5861 8061.9521 21352.5276 2336.1372 5208.2743 8691.0615 3556.5472 211905479 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7616.3713 9026.0258 85887.1149 3594.6484 2349.6483 2349.6483 2615.638 9423.9348 3738.0099 2334.9372 6165.9631 85676.9668 4141.1019 5168.6187 2555.6743 2573.3029 2892.4661 3694.1006 6019.3773 94471133 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10665.8058 4856.0853 2289.0082 2289.0082 5564.8675 171464116 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 7706.537 5999.7061 5915.1045 2446.598 2996.2587 4751.0369 165583.8122 4075.1311 8513.3289 5432.2086 4613.6488 4613.6488 8419.542 7161.8677 69447.7915 4143.8199 5681.0066 2735.2393 9287.2608 3061.3271 8193.5782 2662.9734 7187.2301 325961817 urec Nitrogen Ammonification NA Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 19876.7292 209401844 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7286.38 2162.7606 24826.7202 2449.1031 6010.8434 5489.7248 5489.7248 2130.667 338233964 ben_bcla virulence NA NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 1408197.664 4091.905 371777381 cysJ Sulfur Reduction NA Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 10633.132 26349.2099 296426611 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 26654.7332 10344.3362 3698.708 2408.8071 2408.8071 9333.7047 156523001 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 23553.5633 5506.9428 2494.9332 3613.1363 10023.0967 2111.1486 2111.1486 7313.2869 6187.9952 3890.3261 5788.9203 409401034 dehh109 Organic Remediation Chlorinated solvents NA Acidocella sp. MX-AZ02 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidocella; 20442.3402 2329.1657 2916.2674 122413.1833 3658.4416 4001.223 3790.5629 3073.4845 3073.4845 2938.5494 6552.1471 7160.3493 5756.7992 5407.895 4649.0402 17962.554 2562.368 11414.5009 5409.632 6807.2011 2541.0307 3797.6021 3123.5517 2200.4192 94495478 arsc Metal Homeostasis Arsenic Detoxification Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 16651.836 5160.7034 17615.916 56514.6465 4115.4843 3672.179 5033.1617 2713.676 328544598 dehh109 Organic Remediation Chlorinated solvents NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 7542.62 3822.5094 94421968 chnb Organic Remediation Other Hydrocarbons NA Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9750.2469 317052689 tehb Metal Homeostasis Tellurium Detoxification Desulfurispirillum indicum S5 superkingdom:Bacteria;phylum:Chrysiogenetes;class:Chrysiogenetes;order:Chrysiogenales;family:Chrysiogenaceae;genus:Desulfurispirillum;species:Desulfurispirillum indicum; 6946.865 4495.7351 5104.0435 1795.3069 3019.0136 86607681 Sir Sulfur sulfite reduction NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 16672.7944 3235.4155 19167.2869 3087.7404 129271.9396 11151.9595 3499.1507 3499.1507 7881.4059 4052.7212 16840.2377 7157.028 4901.405 4993.9834 5522.4695 17778.3629 6728.6741 171320495 tfda Organic Remediation Aromatics Chlorinated aromatics Burkholderia ambifaria MEX-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 10070.0886 3899.0573 295831935 amyA Carbon Cycling Carbon degradation Starch Leuconostoc kimchii IMSNU 11154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc kimchii; 13741.7139 375146415 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 14607.7114 2293.0851 84627416 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 8194.7903 13024.885 13024.885 332286866 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 47114.932 5258.1278 2089.7263 2644.131 5926.8486 3489.2859 2681.0819 222354152 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 15960.7954 15117.8069 5725.0492 3340.802 154321369 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8435.4102 334103033 ppx Phosphorus Polyphosphate degradation NA Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 22417.9315 3055.8591 5986.7981 2088.761 4462.5494 2515.8855 371999992 atzd Organic Remediation Herbicides related compound NA Rhodococcus sp. Mel superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12234.4195 3273.2465 2474.1442 4204.8359 2091.4542 2091.4542 63373.4349 2908.1792 5994.2202 5848.71 2533.4036 46205997 Sir Sulfur sulfite reduction NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 8823.7777 4072.0768 2873.2968 8604.8308 13120.4622 5183.9903 61475.8836 8339.5008 7997.9767 4352.24 6811.6167 6811.6167 6973.43 11910.9774 8269.5503 6453.1721 10658.3878 4767.9225 4509.2283 4809.742 11738.4249 4044.8546 18950.9992 11139.0788 9544.8556 4144.3953 8612.6879 6743.1188 5905.9217 8438.1182 255292322 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 8728.7903 3890.105 69008.8307 24814.4239 2824.5277 2824.5277 3160.7617 4283.0967 21746.8413 13490.978 1676.3778 356690426 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9985.6572 6649.2163 66675.3344 7059.6665 18762.6709 7172.6668 3533.7063 3533.7063 8763.5418 8769.1082 3191.7022 14942.5138 15452.2948 9114.1078 205476.6331 9068.3156 3730.2927 4037.2918 5120.9527 170939361 dehh109 Organic Remediation Chlorinated solvents NA Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 14701.1473 2802.9577 4730.9998 17937.2412 2814.2736 3857.7823 4849.1418 2562.1424 4106.7122 39982726 terc Metal Homeostasis Tellurium Detoxification Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 13725.2889 5508.8341 21487.8737 2564.4154 1328212.4219 21776.0328 1986.4839 1986.4839 15774.801 7843.8854 4243.0119 3250.0943 3248.4106 3884.434 145235525 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 10698.9475 7546.9566 4158.308 10852.8957 94181.3134 7212.2936 4816.3692 3391.8098 3391.8098 3977.018 8022.7825 10173.1704 5781.9577 4679.1178 7212.5231 10531.7483 11874.693 10426.635 3178.0074 10635.4032 2496.7918 146404231 rubisco Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 16218.7708 5879.8107 3831.424 4081.8005 4216.6044 5088.0743 3077.5925 3077.5925 3263.6053 5991.3777 4361.8901 5685.7164 6697.0986 2831.8302 5682.4703 9486.9044 5580.5086 6218.7157 2984.1301 2953.5763 3113.4382 21544.5885 27413306 protease_serine_fungi Carbon Cycling Carbon degradation protein Pneumocystis jirovecii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pneumocystidomycetes;order:Pneumocystidales;family:Pneumocystidaceae;genus:Pneumocystis; 28566.9077 3246.0445 4552.253 2380.6372 3026.675 8096.3219 2991.3793 105597.3623 4146.7418 5200.6625 6994.9231 2142.0508 2142.0508 6223.7039 7419.7887 4304.6022 19543.7397 4980.0849 2368.232 3482.1857 9833.7883 2752.1345 14388.5453 7324.5071 7627.669 1848.7873 3580.085 3568.553 6983.6955 67538432 badh Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9182.6656 4691.772 25087.1855 392542089 dehh109 Organic Remediation Chlorinated solvents NA Pseudoalteromonas piscicida JCM 20779 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas piscicida; 26683.0484 8413.4533 2500.5422 2361.8311 2361.8311 5170.5445 4957.706 403723075 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 8356.1185 2918.9067 3540.3726 56820.2301 4711.2398 22462.4372 2409.5286 2409.5286 2537.7622 3476.9436 6764.8038 12924.6213 6505.0269 7412.4036 2481.607 2716.3202 2105.5213 60476022 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 8723.2623 288922168 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 15054.9576 23545.0964 5099.8334 4140.3356 5016.654 2764.7804 2764.7804 3221.1404 3774.253 2659.0696 8778.0064 3196.815 4294.7453 6102.9064 2424.1774 2707.8197 296426391 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 10200.0244 2923.7143 16528.9362 110286751 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 9508.7507 6743.2184 13333.8781 17452.1126 93053.6329 50611.1221 3581.1073 3581.1073 7652.1306 2652.078 8706.5902 12339.0417 2927.5714 22775.0202 2888.7086 40745790 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 16306.625 6185.7506 2901.3067 79431.5362 10283.0384 3723.684 3723.684 6052.6854 3922.3786 4908.4419 301119085 rgl Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 8778.2898 62003533 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7423.8303 3612.9217 3114.8632 3752.8163 312168457 tehb Metal Homeostasis Tellurium Detoxification Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 23956.9462 3111.8115 4713.5962 3420.735 3420.735 6520.4715 8338.2147 7417.584 18328.2794 35808.2669 3243.7662 5950.527 22071.3117 14766.852 6691.2432 1947.9633 3392.4875 1595853 amyA Carbon Cycling Carbon degradation Starch Cryptococcus sp. S-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;genus:Cryptococcus; 12826.5966 6031.7233 2768.474 3840.9226 2179.1581 4221.4921 4455.9987 2793.808 118469608 catechol_b Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 8056.8085 4409.6001 21058.4984 19210.9844 34557165 arra Metal Homeostasis Arsenic Detoxification Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 19676.2322 5881.1668 3232.6026 3388.7935 82145.2729 4096.4859 4180.4283 11276.7401 4829.9077 4829.9077 6819.8715 3220.3261 7160.3902 3814.7794 163744301 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 7906.6625 5703.6284 5652.4726 73841.3671 1867.542 1867.542 37540.1362 77961236 dmsa Organic Remediation Others NA Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 10296.2863 194337338 dsrB Sulfur sulfite reduction NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 42504.453 5633.4879 3786.6654 120363.1927 6327.8856 3644.7637 3644.7637 6696.6759 4877.7239 4630.9983 3235.5374 5687.4297 5645.6927 5587.1088 2447.2341 4155.7672 3849.236 5152.6567 317055023 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 11113.2282 117188573 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 12980.5596 310914431 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7109.3334 3044.9209 6741.2387 2879.204 3176.3461 148591747 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verpa conica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Morchellaceae;genus:Verpa; 7101.4958 148499640 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 13681.595 2227.7265 3224.4823 319418065 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 12371.3452 1806.5513 1806.5513 11144.5689 121495606 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11936.3482 3222.2184 3498.4623 4460.5275 3244.6564 125201.9784 4234.917 4544.6611 9358.0359 7035.8394 5698.4854 5736.1773 10283.1549 2858.8495 11465.0273 3909.6585 10068.234 8634.0138 6964.208 2493.1905 4022.6228 4109.3911 2773.1622 326792741 rgl Carbon Cycling Carbon degradation Pectin Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 17613.1564 2421.9545 4987.2584 3574.9099 2397.3439 284165922 amyA Carbon Cycling Carbon degradation Starch Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 8741.3066 2580.5642 2857.0517 15750.1985 3097.8081 262045459 terc Metal Homeostasis Tellurium Detoxification Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 6998.2066 2236.5063 32593.547 3405.0301 3770.8529 262219.4922 4756.0334 3414.0504 3414.0504 6193.9631 4536.1523 5487.9925 5305.8678 2349.4686 119500784 phospholipase_B_fungi virulence degradation NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 9493.9614 8772.9698 41372.2123 89358823 catb Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 70248.924 3076.4383 3076.4383 18034302 dsrB Sulfur sulfite reduction NA Desulfovibrio fructosovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 9292.0593 2256.7499 1938.5114 3423.3948 3253.0149 23290.5168 2067.9642 2067.9642 10004.7795 3403.1242 4329.8276 4638.8117 12273.7694 2462.0194 4718.0748 1689.2261 3673.9294 146193593 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 19439.7908 5090.4171 3249.1142 5890.6616 4960.082 2991.0243 2991.0243 2960.0926 9591.0658 5000.0722 4635.7781 27738.8238 6849.1789 7309.9784 2720.5123 18313119 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 10350.0127 5873.0906 2923.6755 2923.6755 337761313 urec Nitrogen Ammonification NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 10085.0921 2519.6164 9241.4336 94282.8028 8775.9017 3060.0294 3555.8047 5723.6456 390943751 xyla Carbon Cycling Carbon degradation Hemicellulose Belliella baltica DSM 15883 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Belliella;species:Belliella baltica; 9276.4123 6122.2058 4600.7993 3095.6267 374314044 ppx Phosphorus Polyphosphate degradation NA Serratia symbiotica str. 'Cinara cedri' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 8436.86 7209.5247 3950.9912 13852.9656 114195931 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8731.6099 3216.3187 7449.1413 6582.3693 33241733 amyA Carbon Cycling Carbon degradation Starch Chlamydophila pneumoniae TW-183 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia pneumoniae; 15715.1629 1858.5404 151302256 APS_AprB Sulfur adenylylsulfate reductase NA Desulfofrigus sp. HRS-La3x superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 11898.1954 7462.2552 4241.6911 6676.4006 6065.9713 4792.2058 13053.7289 5224.1468 5901.4138 4977.4092 5392.0494 6209.316 45421754 endochitinase Carbon Cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 11186.5664 2527.7262 30820.6804 26320.6464 14731.6804 6303.7663 19391.463 19391.463 3857.377 352096395 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9070.3485 157804858 aps_apra Sulfur adenylylsulfate reductase NA sulfur-oxidizing bacterium DIII5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8086.4971 4924.5931 2227.5739 3456.077 6137.9255 8265.2585 2718.7679 2718.7679 2998.8346 2896.6339 8396.4201 3130.2033 3857.6191 3338.8979 3747.0275 3498.216 6974.3257 73660999 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 50014.4486 15398.2954 3507.6407 4257.1455 7473.3645 3187.3458 209128.6649 6137.4537 4979.8654 6656.9629 5994.0687 5994.0687 4482.1725 5106.306 7986.8951 5974.1089 20050.9944 8817.6906 5577.912 8520.8043 3134.4452 7943.5817 14200.9854 353209424 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 11350.2393 6427.1978 3806.1148 5220.6478 63340.9593 9342.2244 9607.7914 12887.6207 12887.6207 4514.0081 3758.4815 10386.2106 3672.2626 5908.9284 1966.7461 345647700 amoa Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 6788.4925 357428354 cellobiase Carbon Cycling Carbon degradation Cellulose Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 23314.7289 4032.8508 2969.7748 65590.8311 5679.333 3875.1085 3875.1085 4474.0773 4374.7806 2374.2118 7475.7486 2467.0999 5414.6327 4356.707 134077981 phospholipase_B_fungi virulence degradation NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 20178.3906 4934.3362 317475257 pme Carbon Cycling Carbon degradation Pectin Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 7039.0675 1893.2284 1893.2284 381361763 PRK Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 22734.0108 3263.7317 3263.7317 8797.1456 5381.1754 4360.9683 2539.8874 2407.827 365842914 nifh Nitrogen Nitrogen fixation NA Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 11293.9861 2831.0967 3539.3775 3642.5242 7114.7714 3293.1611 3293.1611 5618.2905 7627.9707 10724.1522 2336.8081 372489701 terc Metal Homeostasis Tellurium Detoxification Dechlorosoma suillum PS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azospira;species:Azospira oryzae; 64641.6625 220692628 sdsa Organic Remediation Others NA Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6647.3916 33173.8119 3913.001 2831.0377 66902.375 3297.101 4182.0117 2952.7697 18880.0224 2998.8552 2559.6882 338764339 amyA Carbon Cycling Carbon degradation Starch Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 15993.1439 3192.9923 40345.2452 3432.9212 209530017 TIM Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 14329.8431 6383.608 62348.8207 2691.3746 2691.3746 3903.6111 25928.9517 2705.963 3877.2168 29466028 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37134.4654 10274.0478 3608.7026 4298.4194 4074.0739 4547.5491 114991.0054 170635.8326 5055.4991 4723.2073 3735.1356 3735.1356 2945.3867 9957.4644 8957.3335 7284.0261 2995.4635 5192.3993 23888.0426 3844.8877 293599.9214 14245.7448 31229.968 3118.7089 7211.1997 4180.5971 7389.4591 302887308 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 13454.0571 4233.9234 59375.8338 2463.5183 2463.5183 12427.8135 10019.5239 408417945 tutfdg Organic Remediation Aromatics BTEX and related aromatics Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 73034.1388 18930.8199 4295.1919 2493.0085 1778.3119 2291.2892 388530978 B_lactamase_A Virulence Antibiotic resistance Degradation Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 15300.2566 3628.3752 3363.6019 33517.4513 33517.4513 8043.2315 5064.7243 13896.6917 2199.9496 3867.6712 2155.881 4513.8934 227537655 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 14778.7716 307264549 cysJ Sulfur Reduction NA Actinobacillus pleuropneumoniae serovar 13 str. N273 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 14719.6971 19172.7461 4177.0776 4177.0776 88816552 cysJ Sulfur Reduction NA Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 10756.7162 3211.8291 4407.7149 4058.9666 2459.5916 6672.994 3876.1043 7037.5875 2135.5074 2682.5418 1705.9272 2795.2373 1984.3357 219848982 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9630.615 3052.7162 8790.5756 4064.8192 22545.7803 10746.2778 5482.8169 6214.1264 4005.6107 3509.8612 225044924 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7014.3344 4313.8291 4313.8291 6084.7849 199594053 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8620.722 5920.0158 4853.0223 77920195 arsc Metal Homeostasis Arsenic Detoxification Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 19197.8262 7818.6 2602.7492 4355.5425 3800.4407 2530.1863 103499.2239 5183.388 6838.816 12690.5755 7231.0894 7231.0894 4210.5034 10951.0684 6885.1168 3993.6554 6519.5966 5783.8717 2663.1965 3488.0398 10860.3301 2069.4647 15563.3719 7497.9839 9585.839 3754.3718 3706.4446 5154.6208 2339.0608 8423.2914 334341121 amyA Carbon Cycling Carbon degradation Starch Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 17728.1831 2776.1955 61029.0182 10133.0237 3997.1792 3997.1792 8109.759 4234.1766 242810693 ara Carbon Cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 31008.326 5104.7231 15142.7868 6713.8348 8439.3748 5674.5394 269096060 RgaE Carbon Cycling Carbon degradation Pectin Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 56149.4997 2577.3651 3629.5439 7084.1412 5026.1633 9065.9847 11201.0296 11201.0296 9711.7589 7721.2454 12183.4791 4292.3701 8829.7901 2357.6955 7288.9883 16043.9705 11548.3259 6150.5077 2255.3948 6678.2668 20395.79 2286.3994 12860.4116 87281225 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11788.7651 10340.4391 3134.2355 4803.8071 4777.2162 4777.2162 13094.6898 14831.6645 4741.4597 340554968 tktA Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 26893.8833 3286.6706 5565.6255 3987.1169 62131466 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9148.8147 365331237 sqr Sulfur Sulfide Oxidation NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9570.6528 12026.5188 4363.4085 5063.1261 238709575 B_lactamase_A Virulence Antibiotic resistance Degradation Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 11637.233 21986.2695 4665.0251 2847.2628 2847.2628 3006.0021 1765.4442 20293.7682 349787949 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 6670.7044 11398.902 6921.7977 5035.8048 52550195 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos35D7 superkingdom:Archaea; 43688.0255 4498.5116 3766.0799 6878.821 4534.8526 2989.9044 227181920 terc Metal Homeostasis Tellurium Detoxification Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 10154.6422 27167.8591 2364.8651 2347.1495 5152.2396 5970.8085 3226.0084 3226.0084 4253.4518 7088.9528 2214.6402 4082.6269 6687.8559 11701.3206 5673.9689 125998101 arylest Organic Remediation Aromatics Other aromatics Shewanella baltica OS155 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 10469.5397 12667572 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr615-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9730.7329 60130.1981 4483.8363 8553.3668 3865.8601 3865.8601 4456.8111 118639575 amyA Carbon Cycling Carbon degradation Starch Petrotoga sp. 64g3 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga; 13126.9341 84761.7511 4019.9299 300390283 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8184.956 8724.5981 2198.0812 6362.1441 19025.2799 3991.5752 4175.8386 18973.8683 1708.7323 62731974 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12335.739 6032.5641 6378.6536 2926.0948 2926.0948 6239.3302 1723.4238 2944.3749 71383852 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7538.4752 5198.6796 10737.7501 2984096 soxY Sulfur Sulfur Oxidation NA Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 9280.2246 7647.2449 2142.0578 3541.9654 4977.5812 2446.4556 2446.4556 6347.1012 3674.9086 9572.9418 4385.6068 6936.2163 2049.4546 2419.7125 6159.462 83853076 FBPase Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis sp. HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 9098.6091 2796.8817 2796.8817 8746.5677 3332.3345 10620.2853 5599.9713 3229.7054 116634801 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10003.0906 6069.796 2523.1624 3433.4168 4628.4155 4287.5013 4181.888 2149.6863 2149.6863 9303.9811 6898.4966 4681.0127 7276.9789 5925.4332 3176.3816 8294.3247 3624.6004 12449.7085 7312.2165 5468.6408 3685.3535 3923.2498 3678.2444 2552.5499 13428.661 320008533 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 9107.6796 384085.0601 6057.0946 4104.9994 2374.9698 25001.0939 3768.794 164415626 mer Metal Homeostasis Mercury Detoxification Arthrobacter sp. Seq24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 14736.0906 2310.9625 2310.9625 126013262 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 14811.7481 23181.3626 4383.1269 1946.9897 1946.9897 55272.376 11849.5561 2375.6689 3336.1214 149229832 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 12918.6738 5288.5613 6405.7228 3052.6283 3052.6283 257149521 ppx Phosphorus Polyphosphate degradation NA Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 6828.3645 6927.2885 5742.2967 196256088 urec Nitrogen Ammonification NA Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9545.3325 12609.5656 58668.3142 4492.0144 2333.5232 2333.5232 6201.8641 5579.298 4918.9801 4796.346 1823.8806 89474088 nifh Nitrogen Nitrogen fixation NA uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 7054.864 119477761 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 16082.0944 2805.2759 3971.8676 4657.1407 134308.9746 3586.1309 7431.9194 22469.9829 15854.386 15854.386 4576.2104 2114.9697 7659.3559 3193.2517 4980.0772 115519025 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9141.1053 3202.4828 2703.4582 3131.5159 3758.6485 65418.1041 4617.1188 2318.1255 2318.1255 4572.2517 3151.7121 4780.2575 3757.5262 3706.0377 6743.654 8860.7159 6617.9513 5804.6068 2764.1786 5754.9213 5173.1126 67538326 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 36856.3082 2736.3559 4196.9649 8564.2176 5603.4729 4758.1003 36042.9739 4379.1683 3571.4303 3226.1641 2376.4271 9943.4981 4113.9554 6639.8158 3082.4881 3984.8509 3180.6636 4938.9733 294970658 gdh Nitrogen Ammonification NA Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 24167.7847 4326.5234 20443.0199 56825.3672 5595.7012 3919.8328 5553.115 3606.834 9172.0632 5180.3209 9004.9918 4247.3499 8871.1902 3030.2874 2733.9522 3242.968 10887.7291 283814624 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 7426.7217 111073741 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11106.6078 17900.4753 2735.6624 6652.3461 3411.8422 655092.8419 3676.43 3647.0702 7420.8929 7420.8929 2617.954 7438.0221 2112.8366 5512.6406 6672.95 2571.0657 238917337 RgaE Carbon Cycling Carbon degradation Pectin Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 13640.126 4628.2492 3318.927 3318.927 4482.9933 8319.626 4706.8519 1965.3233 37955560 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 24016.6462 156523557 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 8923.8277 3485.3485 66330.5397 8721.9578 5224.0978 2410.1895 2889.0503 111073797 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9325.7183 4243.8318 6886.384 214031158 mer Metal Homeostasis Mercury Detoxification Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 8173.017 4432.6908 2066.3958 9501763 alginase Carbon Cycling Carbon degradation Alginate Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 9920.4636 5383.4229 13259.4651 3930.6244 21856.782 12761.6254 171676904 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 13164.0462 6431.2783 65449.4461 3968.8861 6128.742 2978.4888 2978.4888 3123.6066 6989.0854 92151.3319 5516.8894 11156.1631 3782.5219 114227995 cara Organic Remediation Aromatics Heterocyclic aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 11530.6178 9550.0514 7069.0164 4922.0812 101023.8666 6619.0647 17995.9325 14311.1299 13512.8155 13512.8155 4308.4592 8634.1301 3960.6205 8421.4236 8841.2231 5553.2014 4837.6005 8673.384 7788.5207 9740.9271 17011.0378 2624.045 8336.9004 15617.2371 9673.5854 11309.4037 2199504 rgh Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 14971.0023 5476.3915 2782.973 7130.2682 89160.8839 3577.8182 3697.7065 8505.0922 3747.0734 3747.0734 6638.826 5119.9055 3379.2407 4949.7588 9579.7054 9688.9733 4072.44 6590.825 2370.949 2957.5566 3137.7713 68056074 pula Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 10201.4878 5777.442 3056.8592 14860.7254 121563.7938 5218.6803 5096.7899 8868.9535 5745.7746 187718291 dehh Organic Remediation Chlorinated solvents NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 13083.0103 18723.8289 2887.3591 4120.1409 19241.4405 71383742 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. WH 8008 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7222.1503 5278.0143 2111.3955 2251.0426 4742.6473 3345.5338 80434.6626 4113.9492 2116.8365 2116.8365 4194.3805 16224.3223 3656.8974 2960.6216 5401.8173 2201.9838 3848.0607 4835.8458 2540.7976 377660335 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 7370.8789 49892.2116 59531.226 295667247 nitrate_reductase Nitrogen N Assimilation NA Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 21193.7304 5815.7162 7723.8727 4889.9353 4933.9594 10471.1819 3505.0333 3505.0333 3725.4702 5384.9015 6562.3349 2407.21605 2858.6349 3923.6678 15895.8158 5270.5215 1905.72885 4913.4601 3411.0224 15444.23 6015.9974 iegAssA16 assa Organic Remediation Other Hydrocarbons NA NA 14522.2589 3197.4123 7190.2408 4012.8845 4045.5558 6306.9378 5365.639 4148.9332 2753.7462 7196.4717 4104.1806 4323.333 6531.6391 37901.1931 3252.9639 2632.2289 328843121 alkk Organic Remediation Others NA Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 9684.0828 3466.2687 302673816 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7815.8929 6826.5681 6543.9106 2759.3333 6289.2978 62636.0477 10974.0332 5993.4703 2246.8602 333459199 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 10672.2215 1952.343 11066440 dsrB Sulfur sulfite reduction NA Desulfobulbus propionicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 10899.1939 33070.6169 3009.7918 5954.2536 4509.0113 4121.536 9661.8458 7745.5809 5953.777 3373.5923 15325.2653 2824.3542 20873.7511 7733.8757 21377.8077 3324.9098 3734.8844 2960.3385 293610131 TIM Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. SH024 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter pittii; 14321.6238 3541.7541 3324.2531 2972.678 2851.9079 4494.9492 154300.3253 7485.444 4672.5529 8532.018 5576.1614 5143.3847 5455.1369 4752.7794 66075.71 6735.2557 2428.8637 12223.0724 4856.9829 5489.6109 3038.8054 6010.5157 3868.9659 2608.3891 8975.9586 146296573 ara Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 18752.7861 10442.4537 2919.1529 4078.5705 57454.1106 4184.8067 4279.8679 3812.7397 2681.3742 2681.3742 3712.6296 3787.9457 5863.6847 2826.4637 5365.521 2703.5327 2437.4888 87281062 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13261.3363 4376.7834 6509.2988 6821.7683 3480.5126 3480.5126 6000.1635 23592.5582 6998.8626 5660.4935 2225.471 7206.9674 154301984 pec_Cdeg Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 13188.2895 2197.1839 6702.3419 4950.0574 227113492 rgl Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 11817.2591 65967.4 7392.8297 5771.8485 505326.1861 5702.9552 3793.3429 5525.8151 4277.6152 331695647 cpnc Organic Remediation Other Hydrocarbons NA Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 14641.6765 4938.6919 2634.2968 5377.6307 92118.9889 5395.7993 3078.7837 3078.7837 3360.5122 7163.1534 6298.0481 6419.0693 6320.7035 14767.8861 7447.771 9442.5038 7647.076 8366.7909 2398.4459 3703.6661 2936.928 8250.0115 306517748 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10481.5147 2543.476 2914.2956 2427.3326 225388599 amyA Carbon Cycling Carbon degradation Starch Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 34080.7443 11989.852 6286.9974 3260.4705 173565.4106 12979.4336 8820.1667 17755.0366 12802.1764 12802.1764 8992.3491 11409.8202 4778.4968 13028.6428 10140.0046 8691.253 9326.9895 2861.0349 7679.5062 7569.4456 379067414 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 49231.1113 27719.1905 8252.0764 242208680 cellobiase Carbon Cycling Carbon degradation Cellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 14551.3928 5090.1619 96290.3967 4265.9267 5362.7613 255949250 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 8483.7684 4387.2954 15326.2828 3075.969 3062.2972 8502.6936 73749240 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 8629.8513 47294.5579 255950194 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 12706.8579 27931.218 94579.5163 145246056 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 11025.5399 3259.786 2030.9234 3085.2943 2144.313 2144.313 2895.426 3877.0221 4839.5558 2549.7801 5954.3249 8115.5244 5352.5307 6451.70705 2095.6358 2823.4993 3793.1263 2205.1344 264680860 pgk Carbon Cycling Carbon fixation Calvin cycle Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 163477.8906 2766.3428 5344.8555 4415.0309 7665.3925 101429.8168 22289.7673 9009.529 20232.4949 4614.3875 4614.3875 44708.0562 10774.4731 7868.13 5981.4942 5296.4166 2637.5243 7668.6884 17852.4922 9087.7865 18723.8119 9926.1391 19468.9613 5857.6016 5313.435 5510.6017 240139145 soxY Sulfur Sulfur Oxidation NA Methylobacterium extorquens AM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 13872.7189 14754.469 9837.4943 9837.4943 6114.046 5660.1246 2577.4277 186468963 xylanase Carbon Cycling Carbon degradation Hemicellulose Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6894.7912 167628562 nirb Nitrogen Assimilatory N reduction NA Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 12688.291 11501.0269 260575810 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 19848.7841 4552.6253 26580.5451 2939.5371 3539.9513 3929.723 97132.3518 6633.807 4078.1201 6489.1334 6340.5257 6340.5257 4995.6679 5452.4197 5862.614 7973.7205 2695.2352 114395.303 2201.3474 11075.6116 8671.3524 10997.355 7093.1518 8918.9475 4505.6748 2223.842 113475513 PRK Carbon Cycling Carbon fixation Calvin cycle Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 8225.4773 2854.4273 4114.0891 2481.6873 114980.4504 4973.9481 2443.0459 2443.0459 6051.7986 5192.4559 5109.5923 2713.8171 7289.2514 5206.1042 6686.5344 2001.7102 3182.2599 3776.6339 151302311 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacterium anilini superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 8609.7972 3079.3478 2250.594 5657.9883 4884.5063 3894.6944 2805.1416 2805.1416 6197.3541 4365.3455 37648.9572 4783.9371 2265.2448 2340.5876 5858.056 8594.9007 14347.4423 4933.8427 2447.1866 3192.8697 4835.7857 2009.8117 258587564 nrfa Nitrogen Dissimilatory N reduction NA Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 11471.9391 4283.6061 2907.781 3447.8234 5674.6718 8161.8891 4344.9915 4996.0139 10712.7708 2816.1053 7314.6079 7753.6833 3140.8271 4085.474 4472.572 56798549 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 15428.3823 6160.0584 3787.6578 3352.6389 5673.3085 5673.3085 28487.9638 14699.3374 3152.461 3184.3232 11616.3344 6019.5687 10737.6034 3675.7924 9961.6489 90103735 arylest Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 27755.7575 233745.3452 213536663 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8772.1651 268615816 cellobiase Carbon Cycling Carbon degradation Cellulose Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 12925.3902 296030171 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 51208.2271 8793.4475 6318.9255 4072.2971 8674.3974 28846.3839 147664.4148 7514.2151 7762.1517 12040.5622 6307.2414 6307.2414 5726.2312 11876.2176 11560.2387 5210.6848 22905.7102 3184.1674 14369.3505 17317.5582 18342.3671 7513.154 7802.9666 6194.6037 3077.7389 333900708 terc Metal Homeostasis Tellurium Detoxification Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 9736.9155 89155.4118 4738.1604 4416.4619 20501975 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6719.6115 6281.7448 5415.1203 1718.2712 4608.2741 1655815 xylanase Carbon Cycling Carbon degradation Hemicellulose Orpinomyces sp. PC-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Orpinomyces; 7376.4712 218221000 ppx Phosphorus Polyphosphate degradation NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 12159.9398 6281.0376 3039.5263 3316.2424 4005.8886 65659.2347 4145.3463 3781.8437 4159.2694 4334.0373 4334.0373 7223.2663 7489.6929 7029.4864 4799.2069 4806.4757 4213.0218 2733.6117 20762.0858 12934.4793 6391.191 5507.0268 3077.4518 3878.3852 4899.8273 3671.1857 315592587 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 7778.2905 10806.9461 2283.3378 2283.3378 15874.2742 6031.2597 2733.7816 322516701 nfsa_2 Organic Remediation Aromatics Nitoaromatics Streptococcus vestibularis ATCC 49124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus vestibularis; 48100.3018 4892.8162 2058.6999 142852780 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 9120.9885 14825.724 5315.5241 2855.0015 5327.0237 156933895 tehb Metal Homeostasis Tellurium Detoxification Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 12008.0227 2642.9254 2308.2078 2308.2078 8514.0665 8232.6235 9770.9933 5857.3025 7404.1092 2242.6281 3380.4366 73763082 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 29035.7485 11483.5508 2355.6357 4113.3843 74828.309 10975.1438 18930.8354 2250.3684 5710.6673 6205.3072 6695.2885 2237.6479 340923883 glx Carbon Cycling Carbon degradation Lignin Chaetomium thermophilum var. thermophilum DSM 1495 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium thermophilum; 7876.8508 5793.0805 2412.758 26278702 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 37235.4975 3676.9292 6834.4636 13259251 mcra Carbon Cycling Methane Methanogenesis uncultured methanogen RS-MCR38 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae; 8999.7273 24695.009 8475.9485 4500.3039 5384.434 5027.5923 6590.3329 4421.7197 11252.2688 255103802 FBPase Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 10361.6343 2878.3839 6020.6639 100519.5357 2581.3854 2581.3854 6323.685 3876.3022 9107.7106 26407.3441 2910.8351 5337.3546 3019.6876 3699.5036 5741.6132 4729.3633 3380.8476 3382.6407 2778.578 152991669 sqr Sulfur Sulfide Oxidation NA Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 20734.5965 3573.1712 75671.3144 4119.8134 4315.2984 9383.0273 5778.5236 5778.5236 6786.7033 4898.2153 8012.8924 5141.84 2802.5471 317018194 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16006.3572 18478404 nitrate_reductase Nitrogen N Assimilation NA Monascus purpureus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Elaphomycetaceae;genus:Monascus; 9893.4948 3888.1627 5356.4152 5787.4003 5787.4003 12308.7702 7145.5524 6482.9211 6014.3526 5698.8048 1808.709 162284235 xyla Carbon Cycling Carbon degradation Hemicellulose Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7860.5507 2270.6314 7297.9014 4534.9261 3856.0187 2977.8812 340557262 SoxA Sulfur Sulfur Oxidation NA Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 8180.6169 5088.8061 28577.4311 189438.6773 4900.6109 4212.3904 116804544 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 14192.6085 338536567 amyA Carbon Cycling Carbon degradation Starch Myxococcus fulvus HW-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus fulvus; 7879.3382 4405.9728 3275.4411 94030.0909 5906.4871 6192.4231 6192.4231 2903.4206 6327.5089 3610.2947 5214.6543 4382.831 7492.4046 14449.2771 5384.6254 5476.1587 1867.289 3611.1816 334118541 rubisco Carbon Cycling Carbon fixation Calvin cycle Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 9566.2248 201374.9747 4820.5359 4237.1915 7817.488 13888.1134 2828.1967 4866.0866 2983.4473 5674.5017 33240280 Sir Sulfur sulfite reduction NA Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7786.0692 345285246 amyA Carbon Cycling Carbon degradation Starch Lactobacillus ruminis ATCC 27782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 7765.5092 66123.9746 344925148 nitro Organic Remediation Others NA Candidatus Odyssella thessalonicensis L13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Odyssella;species:Candidatus Odyssella thessalonicensis; 15657.532 8275.8514 5642.9329 5432.2081 71450.6949 9065.8085 7846.3091 5674.6315 5674.6315 4808.3909 6574.7043 16767.2656 7343.5069 5055.0437 10952.5779 2376.8709 15919.3956 8481.7175 9347.5761 6736.9024 3831.9861 5759.571 317969558 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12330.6284 9444.2667 295413225 phn Organic Remediation Herbicides related compound NA Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 12722.9547 4665.3289 2262.4813 2262.4813 374413646 dsrB Sulfur sulfite reduction NA uncultured prokaryote 11955.0604 6202.4773 261837021 TIM Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 14371.4901 21379.2071 3149.2641 3234.3406 4234.4924 326332780 one_ring_12diox Organic Remediation Aromatics Other aromatics Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 7713.936 4873.446 98038.7132 91696470 urec Nitrogen Ammonification NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8029.7874 3580.3988 2631.1846 316981148 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 12647.5465 261352672 rgl Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 8354.8594 2212.8689 79107.5945 10513.8284 6758.883 3139.0944 3794.3636 219865486 FBPase Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 23975.6948 3069.5752 6114.1416 59395.6949 8246.8728 8508.832 1982.7251 1982.7251 6120.9215 5420.276 7993.5585 2119.4233 5456.8785 2077.1981 2544.1432 2946.0941 254775662 amyA Carbon Cycling Carbon degradation Starch Mycobacterium avium subsp. avium ATCC 25291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 9093.286 7064.1586 242779363 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 13816.1491 5173.7275 9644.263 5741.5862 3309.1861 4900.0242 6797.072 4892.5709 3704.8808 150031334 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 19821.7808 8086.8541 2066.7464 125633.1167 4404.429 3193.2572 3948.556 4225.9621 4225.9621 7515.9299 4064.6668 3344.7925 7750.451 4368.4014 5462.2829 3596.9427 157285616 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 11878.2348 15009.2171 31618.9652 6614.1726 43279.0917 9308.911 6120.4387 17844.5267 7616.1998 18829.9714 2572.6103 7369.8249 7624.8754 3531.7842 115999883 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. A 7-7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8161.5844 200630.3642 4138.3599 2488.5921 2488.5921 3299.3224 335042915 urec Nitrogen Ammonification NA Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 8402.7118 154159165 catb Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 59828.6285 6236.4103 48306 amyA Carbon Cycling Carbon degradation Starch unidentified bacterium superkingdom:Bacteria; 10724.684 4736.756 4586.7413 2203.8065 2203.8065 182412923 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 7728.4766 4510.9566 6369.3149 388467009 nirb Nitrogen Assimilatory N reduction NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 9742.0556 2413.3338 2413.3338 302695287 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 9532.7985 5056.361 1941.7253 3683.1387 2538.9642 2538.9642 3050.1894 6496.7223 2227.863 5137.524 3340.2399 4861.7894 1593.5816 2972.665 2007.2214 171691651 glucoamylase Carbon Cycling Carbon degradation Starch Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 11274.9778 2937.4045 2834.8449 5042.5838 4290.0833 2581.1213 2581.1213 5893.0218 3854.9115 10989.0974 6573.303 3613.1929 2115.888 4545.4868 359344891 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 11258.4553 2951.2941 2951.2941 2726.0733 7511.7523 4754.7088 3316.4096 62131458 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 17149.1862 4202.3259 2696.5267 2696.5267 8401.0426 4348.6855 6599.6291 6274.9919 5858.3336 3102.7665 50550429 Sir Sulfur sulfite reduction NA Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 6650.1971 3920.0617 3225.0279 19360.4803 2525.8733 2525.8733 7503.0535 3587.3537 2925.7404 19628.334 2104.1338 3044.2194 2964.7565 159043702 cysI Sulfur Other NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 12791.0931 2219.6388 4336.2567 89375.9373 6594.9574 4939.3499 2827.9664 2827.9664 4888.4755 6788.1143 5293.7807 6093.2481 28041.9584 20900.904 2608.4405 5651.7075 6904.8757 4634.5527 10692.6984 16551.51 9015.2188 6341.0694 11110.9038 7416.6093 3022.9675 298385014 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 20046.5602 32330708 actin_ciliophora Other Phylogenetic NA Tetrahymena thermophila superkingdom:Eukaryota;class:Oligohymenophorea;order:Hymenostomatida;family:Tetrahymenidae;genus:Tetrahymena; 7085.3006 19552383 pcpe Organic Remediation Herbicides related compound NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 13214.1687 2313.9423 3839.0799 5166.3423 326541020 amyA Carbon Cycling Carbon degradation Starch Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 7236.565 238754294 arylest Organic Remediation Aromatics Other aromatics Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 7553.2862 8510.7895 3230.6127 3230.6127 2901.6176 11885.0772 66876304 phta Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7283.0271 126729045 FBPase Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 8308.6155 2759.8609 2537.7371 3931.7574 2415.1187 2415.1187 3813.9686 2671.7646 2951.566 3799.4706 222138057 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12393.0176 5317.8585 6467.1473 6039.9364 3109.6144 3109.6144 6876.2628 151302269 aps_apra Sulfur adenylylsulfate reductase NA Desulfosarcina variabilis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfosarcina; 23210.2786 121606726 pchcf Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 16099.0435 5753.8934 3072.0495 3072.0495 66849447 amyA Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 12957.2019 402569702 pcpe Organic Remediation Herbicides related compound NA Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 7753.9147 5077.4173 3159.5957 3159.5957 3788.6817 3978.5411 4907.7334 1565.3127 4105.3996 359317519 bend Organic Remediation Aromatics Aromatic carboxylic acid Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 28557.5961 24128.5497 3989.7581 3045.3931 6971.957 5119.7686 3004.1722 213148.1394 4998.7705 4956.9598 18797.4012 2116.0914 2116.0914 5693.0262 12483.0512 6136.0957 17775.8705 7046.8856 3725.0622 14847.3875 6987.3416 14650.3274 9827.4754 7798.6923 3535.3932 7396.9554 4936.4548 2055.9181 11907.861 328922656 cysI Sulfur Other NA gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11311.5564 3297.4495 15654.6572 5460.7145 3869.8302 3869.8302 32928.7087 8941.1429 8858.9991 2755.1378 6119.3766 8430.9469 14459.7653 18461106 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 7951.5188 7002.5316 4020.9035 6763.4708 3277.2934 27490.4275 130888.4477 7793.5312 4658.7273 4658.7273 2551.4917 9528.784 5587.7088 6334.9441 17646.4898 3408.8219 10637.7701 3939.1786 6645.7486 7226.3787 4750.6579 3671.3499 2138.7188 5004.9609 30269567 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8903.0027 8260.6312 4148.522 4174.3036 2466.2356 2466.2356 4487.1032 32060.9297 28571.3262 1829.448 331694506 mmox Carbon Cycling Methane Methane oxidation Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 8134.5798 7379.3538 36037.7397 2963.7963 2963.7963 4915.1238 3198.5586 317018398 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7552.4177 7455.0485 2241.3749 2241.3749 308186009 ophc Organic Remediation Aromatics Aromatic carboxylic acid Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 10229.5836 5141.8475 150400449 glucoamylase Carbon Cycling Carbon degradation Starch Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 10097.7671 187603700 mer Metal Homeostasis Mercury Detoxification Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 9906.6375 2388.0501 2388.0501 4532.5844 2759.2663 120402451 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 24822.4257 5162.0405 9039.9421 3881.6291 68509.5222 4311.3224 6318.5601 8062.8828 3890.8314 3890.8314 3785.6927 16938.3014 6112.8188 13586.9804 19244.7794 3442.443 14757.3577 3605.2895 15522.0686 7929.6502 8723.4175 6139.5318 5267.0488 3160.1585 5221.1888 170089387 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 10091.9504 1862.9465 2945.5112 3435.2487 4335.2937 101511.8998 3138.2831 8820.1487 5319.8782 5115.5567 2337.5965 3185.1127 27152.4455 13383.9668 4796.3632 7396.3506 2364.0897 3642.8674 4076.0242 3134.692 7000.4621 311067190 RgaE Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 18267.4596 81338.9388 58685.8535 28933.9512 6673.0716 2413.5265 2413.5265 4411.5765 2507.6882 9430.4859 42282.8554 11338.6767 5210.0245 126620798 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8361.818 6193.8127 7110.694 7633.8378 3575.5065 5974.8339 3273.9468 3273.9468 7502.8064 5240.0142 6747.471 11241.4026 6089.8749 5525.5905 17356.9551 148238884 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7999.6907 9345.1868 3593.8359 10408.8436 5436.4703 4698.9692 1676.373 90354.5144 37962.7685 26278728 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13173.9378 13915.0683 3547.1096 7381.0999 4901.2462 260221071 chnb Organic Remediation Other Hydrocarbons NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 11270.8007 371952252 linb Organic Remediation Pesticides related compound NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 12765.5255 4203.5451 11629.7093 6290.3984 1928.1516 30525504 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 30667.0465 4364.4034 6072.7293 3227.7724 7013.361 7228.9469 322385824 tehb Metal Homeostasis Tellurium Detoxification Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 9636.5189 226228116 amyA Carbon Cycling Carbon degradation Starch Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 169305.0973 8973.218 219947794 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 21836.9663 2572.9994 6958.9665 3291.5095 119392298 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthrobotrys yunnanensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Orbilia;species:Orbilia auricolor; 8990.3219 4352.8427 2588986 phdk Organic Remediation Polycyclic aromatics NA Nocardioides sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 13960.281 2032.4238 3408.4326 2076.7022 5320.9173 6110.3063 3350.9308 272828.0706 8135.8305 6224.8624 8114.0266 5745.5415 5745.5415 4955.6439 15082.5404 10408.086 8932.0894 11380.1704 20460.2024 4063.7856 6118.3902 13128.5919 4279.9068 16166.2026 10671.294 13371.7969 4078.9638 9521.9315 7470.3158 3260.4044 35019.8106 209401714 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7086.8006 119492610 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 10865.6679 2302.7551 154299317 pme_Cdeg Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8695.5273 4307.4707 119503487 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8008.6138 3928.5158 5518.5081 4753.549 134434.9343 6037.845 10993.5373 4491.1575 4554.6227 4554.6227 10761.6463 8434.7741 7523.4553 108960.9802 2584.8425 12484.8656 2741.8902 8262.6717 5332.3429 7416.3702 2848.8307 3570.6313 3935.3943 3394.7595 373850932 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 6825.8872 99609.9413 63253985 aln Organic Remediation Others NA Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7859.0962 27826.7409 168704683 Sir Sulfur sulfite reduction NA Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 12196.4518 8136.7609 2982.8457 4625.6627 10663.3483 2216.4808 2216.4808 7179.1578 5233.5391 6770.0559 12487.6901 8356.4105 2734.4677 7505.8762 3529.812 9754.5146 5150.1432 7095.8705 2932.1718 3096.0354 2935.3547 6951.3623 378548435 one_ring_12diox Organic Remediation Aromatics Other aromatics Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 9636.5295 7720.6597 2899.349 4330.9004 2841.4271 5083.6553 2814.7279 78172075 soxY Sulfur Sulfur Oxidation NA Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 8487.7903 10099.6222 3247.1811 76938.2094 7229.3144 8764.4522 3774.9955 3774.9955 9867.7763 15647.0308 6412.2786 48707.8208 39890.1692 3222.0051 8771.8462 5332.6347 61154.9801 1987.9671 3486.2458 197628611 amyA Carbon Cycling Carbon degradation Starch Thermococcus barophilus MP superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus barophilus; 8654.2409 302387670 b_lactamase Virulence Antibiotic resistance Degradation Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 19565.5895 5970.8315 5937.3623 8936.812 239907214 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 10584.6599 3600.846 2173.8058 3214.3409 4386.4018 7709.7381 3447.8949 5166.1017 116096221 ppx Phosphorus Polyphosphate degradation NA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 7552.7068 3691.9215 290570037 alginase Carbon Cycling Carbon degradation Alginate Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 7637.4756 4674.5905 94470859 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8068.1622 3760.7792 4710.9792 10898.7865 3430.7014 3617.3346 3076.7957 3076.7957 7377.1373 5241.2648 7269.7806 28696.7866 322515903 amyA Carbon Cycling Carbon degradation Starch Streptococcus vestibularis ATCC 49124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus vestibularis; 17551.1672 21632122 alpha_tubulin_ciliophora Other Phylogenetic NA Chilodonella uncinata superkingdom:Eukaryota;class:Phyllopharyngea;order:Cyrtophorida;genus:Chilodonella; 16918.3222 5402.4603 46124631 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 13512.272 4486.3248 3116.3055 3116.3055 84516855 phn Organic Remediation Herbicides related compound NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 22227.8734 5317.5371 5317.5371 4246.5437 7755.4046 82570672 mnp Carbon Cycling Carbon degradation Lignin Ceriporiopsis rivulosa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Meruliaceae;genus:Ceriporiopsis; 26445.6231 4357.3302 3643.6707 67371.2879 6217.0408 336430237 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 21092.9622 5502.2797 4912.4392 6321.8628 377815736 xyla Carbon Cycling Carbon degradation Hemicellulose Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 10366.402 4227.7239 3686.6291 3029.5828 7804.0452 49141.6417 7294.9199 2945.98 2945.98 3371.6091 15522.4205 4938.7667 6105.5022 6194.891 10901.7751 2345.3219 12345.9672 6720.0623 3071.6249 371776257 amyA Carbon Cycling Carbon degradation Starch Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 10187.3813 5036.4872 6993.2229 3131.126 3131.126 291544214 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 15204.6409 14747.9791 4766.0071 3956.074 6732.2645 6131.0602 4639.6577 4639.6577 7324.9856 7689.8399 180855.5628 5759.964 8367.6684 3579.4655 3055.2629 49734.5592 26133.6329 38569300 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 33516.0268 3652.333 4193.8601 8367.6317 2670.1185 373232912 cysJ Sulfur Reduction NA Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 27194.1193 30269597 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 9049.7613 328853361 glx Carbon Cycling Carbon degradation Lignin Melampsora larici-populina 98AG31 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 9798.4232 116670577 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 38527.3803 7096.1424 7941.1015 4593.9427 3441.6769 223585939 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16840.0744 3271.0003 3155.9083 83026006 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 15146.9845 5907.6169 1997.0217 7566.1101 5429.5201 60342.3034 10032.7296 12246.1309 4901.5082 4901.5082 4699.545 6739.9257 8064.6277 5141.136 4796.2098 7856.9847 4201.7436 226355642 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 9782.9494 4644.1309 8610.2139 5048.4209 2876.1987 385701187 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. animalis ATCC 25527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 8572.9226 2710.3793 2743.9697 5383.3667 5246.373 7694.771 3371.3233 5694.8957 3366.5141 7253.0145 87290254 mer Metal Homeostasis Mercury Detoxification Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 10230.2322 2519.982 3505.1304 2304.5178 4268.2276 161019211 bphb Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 14366.3508 84381458 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 15511.502 5363.1067 6484.5044 14857.9142 3607.0566 2821.4451 2821.4451 4479.4633 2665.7787 8736.007 5146.3361 6962.7807 3065.1046 2263.2779 121531638 xylanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 13290.1424 8098.5774 5052.5768 5778.2516 11091.2741 150731.4032 8172.8297 10897.0179 6133.484 4464.8032 4464.8032 4344.2833 14565.9159 13292.1155 12210.458 3994.1137 24808.1427 5481.0276 19587.72 3950.3541 39951.208 8865.1152 10806.7071 4463.4633 5568.4938 14542.9649 5921.5338 5924.9291 300087706 amyA Carbon Cycling Carbon degradation Starch Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 8228.1736 197089960 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9738.9855 7122.0282 64822.5734 5066.3242 5066.3242 7843.1914 240167789 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 10232.4945 93050.9955 4092.3038 2064.4136 2064.4136 5883.8798 4724.1714 2025.5814 4182.5894 119450881 soxY Sulfur Sulfur Oxidation NA marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7746.9352 2986.7552 3100.1139 64485.9568 5577.0083 3749.2122 3195.701 3195.701 3801.2566 10571.2146 4357.7383 4059.2604 4354.3372 4688.4851 2245.9163 8317.4173 8627.9287 13134.7721 5128.6408 6515.441 1833.6544 3083.1711 6794.5026 27378197 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 14418.9184 68658.7348 6973.9018 5225.039 5225.039 6174.3183 4416.8233 5920.645 1890.8171 383084275 ppx Phosphorus Polyphosphate degradation NA Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 7649.3994 5430.6647 3116.777 6504.0436 2830.1269 5261.7741 4425.0026 3016.4459 248556.2855 24470.4605 13407.5332 37830.8248 18013.5671 18013.5671 3077.2913 5616.4642 3910.0366 38678.2516 6081.6963 3851.2882 6980.7156 3033.969 13600.1915 5103.2203 7788.9676 3731.0685 4275.8435 422314491 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8477.5629 5555.4129 22138.6966 64330.9336 2819.4077 2819.4077 2920.6429 3923.292 3975.5631 16269.8864 5477.2712 2811.5298 7826.5938 8309.3249 4961.4592 43497.7859 4653.1555 2275.9407 306405327 cysI Sulfur Other NA Brucella sp. NF 2653 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella; 15204.7582 5892.8241 3476.2991 93357785 mer Metal Homeostasis Mercury Detoxification Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 13857.5279 3034.477 3338.1617 3858.9701 7959.6764 5151.5578 7487.6202 15749.1028 8950.8363 4666.2174 3733.5125 142853940 b_lactamase Virulence Antibiotic resistance Degradation Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 14859.7911 2646.7952 163107.8422 5041.2633 13949.5815 2445.7931 2445.7931 6368.8811 5663.7199 40738807 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6862.7193 2410.4536 2394.6766 2884.2496 3853.9594 6184.2654 67848.7295 6367.4373 6174.3168 5540.8509 2534.1795 2534.1795 3045.1784 27780.6233 4631.9704 4171.001 5418.9615 2762.5501 8795.4791 7836.5421 5965.4292 1983.951 3222.4518 3997.9453 2375.701 337270232 TIM Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 7074.9182 7394.9619 3919.7664 365905929 B_lactamase_A Virulence Antibiotic resistance Degradation Lactobacillus versmoldensis KCTC 3814 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus versmoldensis; 7844.4933 7524.4512 2406.2916 96133.7 3940.6706 7653.4354 3424.1792 9049.2661 10305.4284 1756.2848 2674.6763 3281.752 74038388 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12263.307 4935.8537 1920.9232 1920.9232 5404.7346 3874.8151 1651.3901 89098045 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 13369.0512 9292.6294 5456.8561 2725.7326 2725.7326 145012251 protease_serine_fungi Carbon Cycling Carbon degradation protein Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6647.9275 639282.7148 11018.4744 12705.1703 66574689 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 17041.9318 8700.7225 11043.7675 3225.2031 59097.3237 7198.209 3628.4162 3628.4162 3712.622 5522.7568 13004.7816 3629.3571 18323.1991 365893891 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8669.0411 2595.4296 7162.6469 4791.9104 7498.7129 2985.3269 2985.3269 3271.2464 7187.5744 7676.2135 4502.704 5137.7637 6403.3843 12970.3177 13712.683 7779.7745 1857.2527 4146.8589 4965.4925 160362624 arsc Metal Homeostasis Arsenic Detoxification Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 10547.375 2265.5075 2590.3184 2590.3184 20449.4124 121713444 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 14474.6245 9045.6392 3160.2293 58028.1585 1967.6646 1967.6646 10432.576 5915.8291 4925.3209 311221394 nifh Nitrogen Nitrogen fixation NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 7498.0776 2439.5646 7121.7888 2899.1644 2899.1644 5742.671 5987.3389 3695.2448 7981.9542 5467.9154 2171.0649 2769.7957 74038472 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8231.0488 4216.9422 4617.8266 5172.3819 5992.1917 4925.1134 122895.9215 5264.7886 4680.6067 4962.1092 2322.0264 2322.0264 10027.4174 9207.897 14336.449 9730.6974 8266.8257 3023.2963 4987.7919 6617.2695 10334.7471 7618.7504 2724.9447 2445.2979 7720.7546 319418516 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 12914.1379 84778389 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7840.5516 117446.7999 336125546 chitinase Carbon Cycling Carbon degradation Chitin Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 14244.9334 6306.9637 57292.9016 10715.9391 3608.2155 3608.2155 7594.5751 3762.6757 340619915 xylanase Carbon Cycling Carbon degradation Hemicellulose Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 13728.7524 7814.2868 5420.3926 2791.5283 2791.5283 4853.3237 229853077 cellobiase Carbon Cycling Carbon degradation Cellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 13403.1688 5102.7736 4619.2858 4980.4892 6742.1484 344174825 arsc Metal Homeostasis Arsenic Detoxification Ralstonia syzygii R24 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 7287.1417 340781673 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 10974.626 5121.916 3901.8324 4512.3077 2959.3416 69780.2195 4478.0474 4952.8571 7410.8718 12222.3209 12222.3209 14024.6678 3434.7224 4528.2861 6221.3638 2852.3909 8353.1659 5302.0943 13688.8535 3464.5042 3544.8838 300075431 B_lactamase_A Virulence Antibiotic resistance Degradation Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 9228.9954 4111.965 118705595 nitrilase Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 6971.4204 45401.0241 5932.6134 4753.8829 2863.2344 5690.3121 217502754 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 14259.7806 7304.4099 2289.1095 3391.4661 2432.4317 135816.016 6699.4791 5389.224 5389.224 3196.0461 11711.4103 12648.4331 7201.6597 5886.968 11637.4585 10894.3105 8036.7506 5525.8127 3900.9856 4966.7273 5573.6551 299816827 amyA Carbon Cycling Carbon degradation Starch Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 9339.7252 28540.1035 8890.2308 9036.0665 357389571 chitinase Carbon Cycling Carbon degradation Chitin Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 27458.5188 2977.0296 4176.9856 2607.0486 7208.8106 4356.4122 4356.4122 13435.2862 8668.4976 9832.8853 5000.6708 6648.9082 1610.9414 5018.5082 3661.1682 77964510 chnb Organic Remediation Other Hydrocarbons NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 9626.0844 3649.3222 1671.2597 2685.2785 397168258 nfsb_2 Organic Remediation Aromatics Nitoaromatics Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 8679.2716 3516.8798 5068.4138 5256.8558 114705586 arylest Organic Remediation Aromatics Other aromatics Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 12648.1299 11555.1733 6310.4064 3112.0975 143595.2816 5544.9798 10328.9344 30986.76 12490.7006 12490.7006 3530.8125 2896.9911 8875.4744 7560.5216 6852.8387 2856.2366 2512.6729 293375458 cda Carbon Cycling Carbon degradation Starch Turicibacter sanguinis PC909 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter;species:Turicibacter sanguinis; 10489.663 2252.766 8331.6236 4494.8323 290963832 icd Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter mustelae 12198 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter mustelae; 8692.3621 6670.5745 5871.9815 388547147 terc Metal Homeostasis Tellurium Detoxification Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8562.1463 867688 exoglucanase Carbon Cycling Carbon degradation Cellulose Cryphonectria parasitica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Cryphonectriaceae;genus:Cryphonectria; 10932.1638 2672.0292 5436.4395 19127.6539 289209549 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 6863.2868 2529.1163 2544.4832 109784.3368 4126.7859 8524.9217 8027.8826 3484.197 3484.197 2740.553 4241.4365 3729.9361 2203.4541 343498176 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 7699.9025 13962.0794 157085212 nrfa Nitrogen Dissimilatory N reduction NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 35137.2846 2407.4453 2407.4453 10693.0582 67538016 pcpe Organic Remediation Herbicides related compound NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 12326.6752 5250.4899 5250.4899 12940.8059 5283.6958 4833.8414 2935.2577 71366857 amyA Carbon Cycling Carbon degradation Starch Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 36201.3002 7645.5539 3630.9563 11399.3116 7357.9294 9540.6905 256421605 amyA Carbon Cycling Carbon degradation Starch Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 19416.799 9498.9013 3678.3032 5210.4839 2998.5451 112394.2377 4779.7294 7159.3617 11692.2131 4787.8529 4787.8529 3756.6632 10245.7362 6485.1535 4963.5645 3445.9365 12198.0511 2503.653 9644.7481 5654.1597 10391.9901 2402.051 3098.1136 6871.0693 89896608 nifh Nitrogen Nitrogen fixation NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 15145.3173 7761.9439 4469.2391 18289.0723 5706.4221 325968023 dsrB Sulfur sulfite reduction NA Vulcanisaeta moutnovskia 768-28 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 11107.524 2576.5415 4344.1539 2602.6829 2602.6829 3258.7295 6981.6554 4347.188 9425.8028 7451.9051 4478.7511 2730.3953 3433.3995 10348.1545 4958.1519 5768.8588 2628.0971 2973.5695 3240.8261 403203262 pcag Organic Remediation Aromatics Other aromatics Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 6950.2054 2865.6016 37693.7005 5733.9835 31790.0145 6381.2167 12602.3682 2427.0443 11125.6559 2106.7101 5319.7266 291442085 one_ring_12diox Organic Remediation Aromatics Other aromatics Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 11339.7811 6117.4692 4914.7985 4246.0012 47025.2675 2627.2699 407717451 bphd Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 45770.2494 4010.9515 4313.1641 116205641 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 7636.1734 43788.9918 4892.1078 6342.6558 3979.7973 5878.7176 229382492 cellobiase Carbon Cycling Carbon degradation Cellulose Coprobacillus sp. D7 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 33748.6265 33516.9937 20484.6149 5136.5447 5834.9316 5619.8667 1786.2127 1786.2127 2607.059 5333.3176 11982.5547 24282.6465 22724.4745 9598.0632 18187.7705 4161.3788 4854.3444 8074.93 309306658 phospholipase_B_fungi virulence degradation NA Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 7356.4187 2852.5217 1979.7974 1979.7974 5992.3623 2690.6236 407429182 catb Organic Remediation Aromatics BTEX and related aromatics Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 8837.9949 5194.9855 6811.7048 6811.7048 3164.2988 5462.4915 2624.0386 23862.6605 6273.6681 21251.2321 2737.2027 55845943 nitrate_reductase Nitrogen N Assimilation NA Phaeodactylum tricornutum superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 26700.6316 8872.3497 2645.2866 4273.0483 4190.855 10867.8001 3196.9491 97112.8541 5410.9046 9557.1083 12129.1595 19195.2456 19195.2456 2893.2252 9735.0092 7279.5292 5418.005 4363.5993 4888.8895 3549.1255 12594.2137 2858.2656 9958.905 6188.3903 10855.7454 3302.517 4335.8869 6972.5757 3131.4926 4220.0992 339021066 PRI Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 8302.622 2699.7615 5015.0925 4656.6167 2348.5024 2348.5024 3393.9572 5045.7444 6405.7805 3385.4097 6857.0206 4859.2001 6375.6523 6634.1257 497876 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8024.4359 4362.8743 292490010 vana Carbon Cycling Carbon degradation Vanillin/Lignin Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 11771.8645 11392.6287 336294871 Sir Sulfur sulfite reduction NA Zymomonas mobilis subsp. pomaceae ATCC 29192 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 15220.3513 68237.3088 4966.4532 2550.71 2550.71 190686311 ppx Phosphorus Polyphosphate degradation NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9123.5813 5121.2267 70206.0122 2129.4059 2129.4059 6091.2717 5898.2112 2289.1867 260222561 dehh Organic Remediation Chlorinated solvents NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 21320.5673 4858.4739 72348.0154 4185.3031 2843.4255 2843.4255 7887.056 5014.8025 6585.8848 2584.6258 5330.3391 9053.2913 2602.4191 3294.4833 315654829 amyA Carbon Cycling Carbon degradation Starch Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 10198.8556 11404.1829 4572.5036 260617752 amyA Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 63428.7134 12393.8006 2186.3272 2186.3272 14982.0245 156255124 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 69478.0971 364573438 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavonifractor plautii ATCC 29863 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Flavonifractor plautii; 8304.1269 6279.5306 6041.509 4380.8224 320159570 terc Metal Homeostasis Tellurium Detoxification Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 7536.7947 25990808 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11199.8188 14109.015 9971.2279 5954.4701 11940.1673 3913.3136 6407.4811 12439.2905 94471157 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1684549.5806 45809.8499 9875.6642 3847.2079 11147.2355 6560.2383 89593.8503 4404.2375 4203.8075 6490.787 3648.6677 3648.6677 3261.3503 12790.7351 10107.3206 8317.6834 6703.71 2776.5662 3802.6415 9709.4407 5379.0535 14152.8973 7508.789 30337.8221 5494.1183 5054.391 5622.8452 5358.7935 15034.4053 335359239 nifh Nitrogen Nitrogen fixation NA Thermodesulfatator indicus DSM 15286 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 25081.4677 9753.1252 3972.8791 2771.6169 3749.6915 104422.5214 3796.7681 5418.3829 12577.9322 5942.7825 5942.7825 9382.9802 5035.7879 4917.3681 11626.131 10676.4078 5687.1932 7045.5564 2430.6922 3350.5683 5417.9078 2745.0174 109452548 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15546.7455 123991438 endochitinase Carbon Cycling Carbon degradation Chitin Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 13087.0771 4480.747 56489.2307 3641.2249 5880.6098 3783.9193 3783.9193 5119.9223 5948.873 83845320 arsc Metal Homeostasis Arsenic Detoxification Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9554.8786 4089.7199 332377162 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8882.1971 5447.494 9175.705 71159022 mmox Carbon Cycling Methane Methane oxidation Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 9732.6589 4794.3183 4134.9743 2025.9997 2025.9997 5169.8425 269785895 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 7504.2516 2978.1897 2951.8755 4427.116 5784.3724 2302.7904 4733.8009 324313644 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Odoribacter splanchnicus DSM 20712 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter splanchnicus; 10732.3047 2916.0753 7709.7921 83840580 soxY Sulfur Sulfur Oxidation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 73712.8396 2068.6634 3497.2261 4947.9894 9311.301 6326.671 2539.8589 339498714 amyA Carbon Cycling Carbon degradation Starch Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 313170.6101 2542.4976 8170.7731 2574.8487 155972.8988 3563.7038 5825.3282 2965.2337 2965.2337 8622.5947 8468.4572 2888.9699 2561.9261 225155684 alginase Carbon Cycling Carbon degradation Alginate Diplosphaera colitermitum TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 14368.2024 8333.4971 2385.7074 5028.6965 139194.2356 5586.7312 6966.9718 13300.6958 5360.6001 5360.6001 4838.6856 2248.413 3221.375 6937.1989 8897.3638 6813.9455 1820.7162 29293214 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9312.3871 121589235 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 17211.5006 2615.773 3039.2297 76078.4512 2911.4715 8221.6784 3665.4191 5178.6449 3050.0506 6028.3121 2294.1709 10506.311 3859.2259 5489.0746 3661.9729 3026.5836 327192977 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CNPAF512 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 13427.0631 2321.5292 4260.5087 5650.1282 3603.9214 9239.3935 2340.6982 2340.6982 10017.2201 7329.8014 8721.7712 7957.1052 69975.6839 10458.1293 7780.5408 7390.039 2068.8051 4258.9516 4163.7157 2766.6542 219862993 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 9886.3181 9966.4961 5255.8378 5214.1779 2091.2864 2091.2864 5474.8716 304394704 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 17323.9057 8534.2 3564.4145 7175.9762 5922.5234 6476.7023 108549.8846 5943.0423 7289.2901 2492.886 2492.886 7395.3648 7476.2364 13342.1591 4518.3387 11404.8392 5945.0981 20502.3694 7403.4093 11129.1793 3159.5947 5827.1182 17153.2907 198265708 amyA Carbon Cycling Carbon degradation Starch Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 19278.6583 3548.6595 305412308 terc Metal Homeostasis Tellurium Detoxification Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 8750.5886 3985.743 3748.7986 6648.8175 170774970 pcpe Organic Remediation Herbicides related compound NA Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 9666.3495 2527.1161 2527.1161 45358855 glucoamylase Carbon Cycling Carbon degradation Starch Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 8945.0256 148974233 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8217.2511 4709.4668 1945.8328 4616.3706 15444.5366 15444.5366 8801.9069 4551.9187 1874.6318 169866352 cutinase Carbon Cycling Carbon degradation Cutin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 7887.1231 2350.4301 2350.4301 2667.5209 7306.6874 3844.308 2049.928 2398.3608 3757.1155 2100.1193 118469448 cmci Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 25706.5521 6783.5539 3535.1091 83311795 rubisco Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 12069.4432 9959.8451 4786.3867 2444.3179 2444.3179 358398397 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 9318.6408 2525.4549 3865.6202 7975.9632 89369.2155 5782.3461 4658.9709 11661.015 2477.5608 2477.5608 2530.7474 4844.8185 5952.9577 35068.8683 6791.1933 2792.5649 8294.363 10700.1479 12336.3871 4349.9156 11303.812 3090.6841 315251837 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 11660.2363 3586.0549 4629.2364 5782.7852 3339.7617 3339.7617 407787250 atzb Organic Remediation Herbicides related compound NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 10644.6983 9179.1521 3407.0856 2187.9879 4333.8158 8384.0244 7301.5659 95824.3558 7185.6938 7546.1437 5599.8183 2828.6698 2828.6698 3357.9501 9814.6465 23651.0757 7375.8309 5109.0852 4046.005 8615.178 35688.9072 11166.5477 6835.4327 7730.8307 2648.3694 4870.4324 5207.6914 13107.6466 5385.165 229815010 ppk Phosphorus Polyphosphate synthesis NA Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 52797.6583 2998.4934 18689.964 43503.3391 167836982 atzb Organic Remediation Herbicides related compound NA Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 9753.3005 3419.6568 4674.2011 2632.8539 2632.8539 16075.2791 4979.4182 6006.155 4485.4837 8203.0761 9015.0902 9548.4315 389638480 tfdb Organic Remediation Aromatics Chlorinated aromatics Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 10913.0088 3519.8226 3975.9593 4958.456 3638.4437 8561.9418 6587.6568 4165.0646 4653.3991 4669.2753 2825.8155 7547.073 12618.0222 6048.7002 6678.6408 2448.3086 5225.6118 3977.5781 3338.9534 8318.4546 339883741 cellobiase Carbon Cycling Carbon degradation Cellulose Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 8766.6937 3733.6163 1646.1002 300087398 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 10477.8937 5461.315 226346960 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10146.5023 3330.3267 114054559 xylanase Carbon Cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 6774.6682 2744.9793 2600.4021 4153.126 9296.82 5188.4422 3515.7781 2386.2749 5500.8332 3924.0565 4326.2376 2817.8331 6072.8228 409417734 sdsa Organic Remediation Others NA Pseudomonas sp. HYS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7510.8338 5474.2115 12243.7914 5636.1059 5285.3131 4501.7068 2790.3638 2790.3638 26342.7087 7103.7701 1994.8031 7476.1599 10086.2194 1696.3452 14444.4914 302414164 pel_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 7232.8096 5952.0432 27381.8223 10501.9067 10501.9067 29846.7813 17980.3669 2110.4744 126105515 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 120780.5355 3845.3678 57379.4388 4182.8672 4191.0644 4191.0644 5990.1994 7198.6867 4511.351 6724.1767 7405.6029 4378.4593 6854.2651 402702276 xyll Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fragi A22 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fragi; 13871.8967 77245.5074 3392.8852 14340.0599 14340.0599 5052.6314 5404.1183 2074.731 5083.7309 3246.6675 374846938 rubisco Carbon Cycling Carbon fixation Calvin cycle Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 7492.3331 3298.3283 4580.3286 6456.6451 71284.1875 4613.9871 7058.3015 7058.3015 11152.783 4111.9177 4904.5653 4826.4147 4644.7886 3752.5126 3815.0796 5372.1137 11810.426 2929.6545 3147.5623 3387.1552 3051.1375 115516823 exaa(moxf) Organic Remediation Chlorinated solvents NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 26674.6522 4872.0992 6910.8071 66898.6106 9961.6626 10970.2021 11598.0816 5834.4672 9042.8417 4816.2855 6526.6813 5372.0959 14992.9476 14328.9409 3172.2581 5998.0044 5405.3576 7815.0404 71915210 endoglucanase Carbon Cycling Carbon degradation Cellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 12823.6381 14459.0641 4210.7757 17733.6042 4267.3615 11784.536 12103.5856 4731.7695 3279.2505 7300.2879 9610.6909 4555.5739 6058.8487 3905.9403 6201.1088 5689.4679 7014.368 295106628 dsrB Sulfur sulfite reduction NA Gordonibacter pamelaeae 7-10-1-b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 9474.0019 6543.5446 10095.3449 2835.2286 2835.2286 5869.2263 4859.6222 6842.424 4685.265 5426.3837 2520.7513 373100577 vgb Virulence Antibiotic resistance Degradation Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 10843.3057 4939.6516 5403.7353 2522.7088 77847.6873 6191.6924 4669.463 7367.2102 4497.5115 4497.5115 6470.1426 346644301 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16703.8731 3757.1478 4328.9501 16773.0107 110647516 arsc Metal Homeostasis Arsenic Detoxification Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 10506.6334 206686013 xlnd Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 15516.1132 7588.78465 2740.8108 89779.4826 3663.3898 9039.9886 4722.3063 4722.3063 7130.8927 4920.8523 8575.42065 2634.6133 9441.0269 5842.50375 6154.7247 2105.86105 3460.38165 110680912 xyla Carbon Cycling Carbon degradation Hemicellulose Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7843.4292 5566.4348 280567.4461 4578.9888 89518321 amyA Carbon Cycling Carbon degradation Starch Flavobacteria bacterium BBFL7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia; 9369.949 88799189 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 9004.8214 177841087 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 22003.4032 4199.6096 3481.5043 3115.321 190758.7855 4602.9417 7723.677 3210.281 3210.281 2654.8891 7110.8522 6318.6507 6168.9565 6925.71 3573.5007 10397.6076 2598.4456 13645.8391 6021.9325 8143.4256 3615.5012 3836.5787 2314.0937 386414416 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus parainfluenzae HK2019 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 7666.5811 47223.2063 110833950 narb Nitrogen Assimilatory N reduction NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 7364.0588 4907.9514 2443.7884 2443.7884 39575866 alkb Organic Remediation Other Hydrocarbons NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 15515.5333 4767.7688 7671.3617 33320460 dsrB Sulfur sulfite reduction NA Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 15297.3146 4708.4757 4299.0133 63393.0323 9793.9169 4108.704 4108.704 6904.802 5537.0671 3063.0077 8026.941 2664.2589 5822.889 2758.7438 3961.9038 3875.1319 3527.7411 377572425 narg Nitrogen Denitrification NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 14214.3157 6653.3238 6653.3238 211905613 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8254.1582 3155.9142 65598.4894 3958.6905 5001.0697 4167.5227 4167.5227 2435.1156 6459.2895 4340.1536 2465.3898 10075.1139 5943.744 3158.6131 2742.9965 4061.5939 334120935 urec Nitrogen Ammonification NA Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 6913.4407 2030.9571 2030.9571 72123629 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 10553.0092 18742.1667 2855.3895 8171.4814 4685.4 75484.8471 4548.7959 4432.9236 2231.8103 2231.8103 3394.9845 10134.0865 4334.6374 7241.215 7125.6516 9391.0135 2789.8265 4010.8346 6569.2567 11899.3157 5160.2461 6112.5034 4571.1221 3798.954 4269.6823 2855.5304 8022.7121 214030141 pgk Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 55866.8489 4151.4067 11105.9983 8296.549 5161.5722 4073.6557 8348.5804 10064.1868 7482.9508 9978.2285 8435.8646 1958.8711 3063.1841 6588.5984 29407.5004 160917781 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6619.0867 2716.3149 66842.0849 3671.4227 5611.0344 3393.5841 4221.864 2163.357 8113.1465 6188.142 2018.055 3543.8082 3611.784 3034.7392 5488.7789 75993817 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 7088.9288 2910.9326 30443.266 3138.6702 4229.2365 6614.2772 12967.8949 4040.465 12223.3533 2489.2584 332377306 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 17418.7082 4919.4636 4977.3658 5186.356 6762.1882 8413.1129 30040.9431 5993.0463 128567.7339 8909.2052 9445.9835 6763.6365 4303.383 4303.383 6274.4792 15093.1594 10633.3518 18704.4327 17132.7629 18125.9805 7909.7714 7765.3578 9347.8414 4440.0163 17409.5361 6026.8285 11339.5243 4382.6863 5715.3754 6691.4348 5121.0339 11355.3672 551239 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium; 758501.3083 6829.6463 65750.6454 6024.5123 6024.5123 3614.6236 4129.7593 156039581 phenol_oxidase Carbon Cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 9243.4752 1933.1897 4958.3344 3250.7207 110642.2822 4972.6572 3546.55 3546.55 2760.6938 5661.2476 4589.3443 13284.7257 5169.7137 5781.6738 6285.2369 3240.1767 19019.8331 171687999 amyA Carbon Cycling Carbon degradation Starch Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 12870.0532 218356380 one_ring_23diox Organic Remediation Aromatics Other aromatics Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 67221.0671 3024.896 5151.4749 2170.1559 2592.957 2760119 amyA Carbon Cycling Carbon degradation Starch Streptococcus bovis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 13226.6507 43643 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halobacterium sp. GRB superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium; 7586.7935 398860674 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. GM79 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9162.0106 6477.7689 3351.3426 2863.4945 86898.7666 4972.8766 4453.8442 7705.4465 3795.1993 3795.1993 10494.1101 6728.4375 2517.7212 5971.9768 9340.2632 10190.0196 3880.8413 6599.9856 3147.6211 2629.1386 2594.9424 298245539 arsc Metal Homeostasis Arsenic Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 9350.3637 3528.5121 2991.0599 6220.331 2402.6159 332637187 ppx Phosphorus Polyphosphate degradation NA Weissella cibaria KACC 11862 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella cibaria; 8572.235 5102.2093 317124481 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 7505.3831 4331.1017 14952.61 16805.8667 3357.8631 5813.1682 2990.0038 72405.6309 5738.2657 5326.2414 4140.3339 2946.3296 2946.3296 6675.6712 6501.095 17829.6586 8585.8827 6270.9348 3246.3856 10625.2907 3730.5812 12781.0685 4794.8126 8574.409 3570.7256 5482.5433 3728.8063 7107.6265 4878.7297 343501497 amyA Carbon Cycling Carbon degradation Starch Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 16768.718 9322.5427 5944.4384 9657.3334 4291.3424 1738.8524 3701.2198 395809379 terc Metal Homeostasis Tellurium Detoxification Pseudomonas stutzeri DSM 10701 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 10727.7725 45790.6332 123921.4662 3588.4691 8526.7629 21455.6196 7670.1095 7670.1095 4117.4252 5380.3858 2354.3482 67232.99 6880.7724 150032829 exaa(moxf) Organic Remediation Chlorinated solvents NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 12026.1903 85632.3143 3884.8085 6746.2251 3725.2991 3725.2991 3920.5926 6988.7293 371486332 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18772.8276 15130.3581 2573.4253 12749.6929 342861872 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 9883.1856 137959.8832 6779.5124 4429.0404 4242.9265 24826.2025 4009.1005 4009.1005 7280.1652 4881.8553 129271.4793 5348.5022 7275.2001 2720.98 15909.5942 10527.6937 12137.6232 3598.4395 2712.2295 13984.5728 313153373 amyA Carbon Cycling Carbon degradation Starch Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 26252.5141 5468.8665 4931.5194 4939.8947 325845131 amyA Carbon Cycling Carbon degradation Starch Turicibacter sp. HGF1 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter; 8073.8112 193089792 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8330.2595 6344.597 4313.6083 3778.5328 74780.8609 15993.1248 4177.6957 3259.9782 3259.9782 4509.4136 6441.7701 7396.0436 4140.8737 5065.801 15867.0816 2847.4635 6113.5703 2614.5445 23380.2164 8146.3112 9915.4687 2661.6547 2978.9155 3043.0127 5578.1893 332683367 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 9043.968 10352.421 2403.6045 3569.2416 5593.5784 3417.4216 3417.4216 6184.0382 5038.5215 8339.5088 6511.0555 4334.2793 3884.7927 9524.9727 3889.2196 5868.0759 2517.2673 15370.2941 255292489 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 37556.6938 3372.6407 5081.8071 79610.3821 3444.4983 7242.1991 6016.5955 6016.5955 4926.3402 3846.5907 4679.387 2587.6574 6643.6293 4007.9359 7447.3792 2677.9906 290583340 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13071.9583 2159.07 3809.7137 4909.7127 2815.0781 2815.0781 5942.7036 3385.1823 4227.211 2580.2887 7686.8171 2915.6253 8627.1842 4448.8636 7837.4411 1729.7368 2667.1287 2989.4795 3413304 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 19686.042 5440.1139 6355.1829 2135.3297 2747.2612 2572.7535 164455500 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9878.5464 13638.3825 5004.3437 9993.4666 6013.2743 254443767 amyA Carbon Cycling Carbon degradation Starch Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 8400.6218 2415.325 20115.0992 2824.3659 59766.0346 5525.5494 7105.5802 2282.7081 2282.7081 7982.5311 6448.2976 5076.4958 6671.0253 10410.1527 5205.0906 6595.3397 4351.7936 488818 mcra Carbon Cycling Methane Methanogenesis Methanothermus fervidus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanothermaceae;genus:Methanothermus; 7951.661 3345.1515 90023293 mer Metal Homeostasis Mercury Detoxification Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 18472.3991 2344.8508 161300.2236 5161.6489 4907.3973 2305.1813 2305.1813 2711.4786 7842.9257 5529.032 9031.2101 5555.8629 2528.1412 7367.3258 11365.0491 4111.8788 10281.3313 2125.7568 3292.5966 3756.2249 2565.6282 5915.8441 257389187 endochitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 9924.9719 15694.3796 10076.3473 2170.1257 2170.1257 4981.3536 330960163 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 11495.0765 874253.0951 7440.2149 6584.7784 311338864 oxdb Organic Remediation Aromatics Nitoaromatics Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 10053.9566 299816834 amyA Carbon Cycling Carbon degradation Starch Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 17946.5276 347734849 glucoamylase Carbon Cycling Carbon degradation Starch Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 7676.6202 2032.0428 2032.0428 3484.4239 5643.4697 21388669 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. YK2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 13971.8801 2750.4205 11334.5067 2262.2906 2368.2984 9145.1828 7766.1923 2824.1595 296426203 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 10151.5748 1647.0544 407776601 ben_bcla virulence NA NA Nitratireductor pacificus pht-3B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor pacificus; 15233.8927 2261.5071 6061.0919 4904.1171 33093.7731 5759.8249 5331.6863 3134.9416 3134.9416 14165.3257 12012.4757 7126.568 2619.3708 13625.8589 3970.5511 2745.9071 6362.8787 367036469 phenol_oxidase Carbon Cycling Carbon degradation Lignin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 10847.2022 4798.2978 8073.0985 3813.4789 3171.9489 4556.1015 3573.0661 24490.4599 4727.0051 6988.6316 5789.9086 4691.5198 6577.7517 3325.4381 18160974 dsrB Sulfur sulfite reduction NA Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 17390.0584 4021.2091 2914.6574 3430.7802 107879.5634 5486.5448 3420.7335 7994.0664 5019.9728 5019.9728 9638.2213 5658.4715 3175.6479 5355.8321 9220.7895 4539.951 15075.3432 4478.6949 2526.0791 112821387 catechol Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10921.3141 5842.9678 10716.6244 5718.8199 5494.2861 2190.2999 218714235 bph Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 64503.8306 189201571 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 34201.7085 5697.0495 74730.8746 14363.2747 5447.1915 7777.4976 5225.1285 5225.1285 8097.9003 2956.0479 4873.9472 6809.3144 1827.4659 373852415 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 10216.1702 6557.1484 2989.4276 2582.5738 5930.4934 4371.4069 9670.7287 4027.1057 4027.1057 2512.6318 17287.784 6328.2825 9516.5785 2366.0907 4356.9635 5138.9667 3041.6359 6813.7913 177842866 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 10264.6058 2438.2041 6611.9326 3109.3042 8308.6404 10041.2104 60129.8783 3876.9585 4911.8137 4911.8137 3339.8405 8803.8617 5151.6292 6607.1568 4659.2968 3827.0332 5208.329 6726.6185 9555.9605 12105.5801 6487.1751 4440.0955 6456.2325 4419.0177 3299.9485 7406.4279 9957143 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus ciliatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 8194.5573 3590.0076 6607.646 2629.1933 4079.5416 11868.6157 57582.7636 110155.0483 5101.4653 7342.1536 14109.822 14109.822 3112.3619 8443.1016 4183.0515 10776.5522 15680.8225 2719.2842 3050.6615 6823.2737 28081.1946 4626.0592 5632.918 7925.2235 6266.6555 2874.8561 5760.483 4381.0159 145017007 phenol_oxidase Carbon Cycling Carbon degradation Lignin Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 15238.8096 284015105 chitinase Carbon Cycling Carbon degradation Chitin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 9505.336 7606.3183 4200.3232 66661.508 3886.3367 4345.9309 4345.9309 7099.0201 3752.2788 5480.6055 5313.1158 364569297 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 7728.503 4665.1612 2190.7965 7928.2352 5333.458 2785.2202 4005.7541 122589.3508 122589.3508 2634.3992 4457.8232 4608.0195 4537.1711 2428.7951 9580.7786 16569.0391 11989.1233 7907.8667 2279.6966 4992.4274 4894.481 2915.6881 119355616 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 10966.0775 724304.5785 257450172 cysJ Sulfur Reduction NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 131060.0933 15873.7158 381362058 pcag Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8527.3486 7670.881 3932.7741 4161.9093 10162.0063 128333.3187 5589.5612 26885.3561 2189.707 2189.707 3184.9246 8974.283 5517.3554 4593.3018 2846.7778 6429.9026 11628.2242 4023.4687 5114.8467 3081.664 2827.3176 4592.2471 340030416 alkb Organic Remediation Other Hydrocarbons NA Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 21032.7677 6251.4118 39893.8001 139003282 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7355.1762 3824.046 4331.2083 1895.0815 304312887 arsc Metal Homeostasis Arsenic Detoxification gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 10311.4978 4885.7163 163803555 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 11283.7388 3334.516 6720.9024 3994.3509 6134.0549 7272.3978 2425.0291 4167.4177 2902.9617 2663.6241 5978.0051 17385528 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9679.6635 49741.4148 124315.0158 300727644 amyA Carbon Cycling Carbon degradation Starch Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 15527.2541 3843.1686 4106.7428 4412.8885 109298.6463 4089.6924 7072.5525 10977.1184 5279.2215 5279.2215 4753.6437 12495.7326 7254.7279 4158.3084 11997.6707 11678.8665 7258.5846 12570.0146 4209.5919 5825.7963 5817.2874 296426439 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 8771.6969 6409.7272 10821.3236 7572.3284 58416260 one_ring_12diox Organic Remediation Aromatics Other aromatics Achromobacter xylosoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 20365.5522 2406.1299 32523.6638 3235.3522 6087.145 3602.496 2975.7366 2975.7366 5921.1183 8150.4269 6862.1855 6005.7592 4967.1621 6589.9923 3080.5751 6549.5924 4023.4982 18958172 hdno Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 6594.89 10175.8755 118424532 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8543.1097 400330601 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 17812.2096 2695.8365 5496.4606 6476.3909 2008.1243 2008.1243 4410.389 4867.2124 11446.3106 88813668 Sir Sulfur sulfite reduction NA Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 15342.0155 10317.5241 241613.413 92230.9471 23622.8727 3437.6389 3437.6389 12632.9531 4414.2911 7201.8645 2344.9792 4293.0515 2637.8764 3180.7718 15076020 linb Organic Remediation Pesticides related compound NA Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 7589.3666 4684.2831 4271.1761 8059.8385 4021.8272 4471.1701 5582.6801 2094.7552 2738.8654 358240172 pcpe Organic Remediation Herbicides related compound NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 16646.1407 7403.2733 3087.6014 68645.6698 3616.6627 9871.0402 4810.2204 4810.2204 4585.0853 7830.7311 4211.9967 1870.7179 209401682 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 42657.5643 18600.6864 2129.8293 2129.8293 4713.4622 104304115 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7644.991 2961.521 2821.343 10196.9036 5203.1659 4115.7365 107677.6653 11050.8117 9713.8086 8546.1633 6780.0004 6780.0004 2551.623 5940.3664 4341.8021 8784.1367 2127.192 9919.6871 3668.4664 6659.0073 1964.1517 4584.9121 193216123 amyA Carbon Cycling Carbon degradation Starch Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 158304.7269 28211.1938 13063.8128 8374.1727 6370.5962 3562.4525 2095.4154 2428.0995 3140.3718 12031.3104 358393206 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 7797.2225 5950.3351 5916.5105 151302302 aps_apra Sulfur adenylylsulfate reductase NA Desulfofustis glycolicus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfofustis; 22712.0685 62529086 nifh Nitrogen Nitrogen fixation NA gamma Proteobacterium BAL286 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 12352.5841 5415.9073 2463.1875 4004.5894 7453.396 3377.9002 3377.9002 4038.1393 6964.5202 109452540 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7344.3416 299006964 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Chromerida sp. RM11 superkingdom:Eukaryota;phylum:Chromerida; 16087.1424 3432.3721 4212.8218 79627.3707 3991.3327 3558.5282 4850.272 2761.9901 2761.9901 7539.3946 5653.3363 5253.8481 18719.5874 2428.236 5127.3324 22992.8529 3950.9557 3805.7 5600.3106 225168858 dsra Sulfur sulfite reduction NA Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 12758.3059 115525078 SoxC Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9105.523 5358.5782 2616.0335 4930.234 6023.5064 4522.6357 3030.6442 7277.9158 7807.7394 2644.4599 4966.4266 4208.9558 38426998 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8888.0775 2233.8879 2233.8879 3634.2321 4711.8625 16071.3733 3798.2068 5323.2703 2847.2516 3088.0895 171912865 ppx Phosphorus Polyphosphate degradation NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 11612.3651 15247.8105 2800.0563 3785.0726 60206.0931 9233.9361 4887.2517 4887.2517 7078.9241 8823.1376 3108.891 9859.3058 10910.1282 8364.1716 2186.1135 3497.9764 152981018 nitro Organic Remediation Others NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7108.3782 2463.8412 2977.8452 5529.5224 184979.6664 6134.4754 3810.0575 6595.3226 5213.0758 15013.1641 3939.7979 3380.3602 5566.5697 1668.0761 2962.2107 32565.6098 220908803 FBPase Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 10202.0168 9197.4364 11019.4846 3246.8852 331000563 endoglucanase Carbon Cycling Carbon degradation Cellulose Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 13754.0711 7853.3455 6793.4724 4740.3945 2192.1094 2192.1094 4128.2799 9775.0517 4725.5507 7613.8797 186682620 cellobiase Carbon Cycling Carbon degradation Cellulose Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 7507.5514 3861.5461 62003549 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12912.0901 127738.3485 4232.1971 11497.864 6139.1955 4834.9403 12632.8334 12632.8334 13525.9008 3883.6965 7128.8845 8579.3635 6263.6733 4762.5559 2757.4963 238844363 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Microsporum canis CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 21927.7568 3608.4816 3213.8369 85722.4412 5773.7078 22798.0248 4627.0866 4627.0866 7482.6085 7029.7827 355531727 xyla Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 12402.7466 2338.5719 6144.9512 5951.0135 16693.824 2094.572 56962920 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 92709.6516 153962684 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 11810.7591 151302292 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobulbus sp. DSM 2033 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 39847.9077 2310.7795 6035.9415 187923580 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 8891.2107 7540.2668 55250.7252 5732.5688 2992.6059 3773.7756 218224252 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 16277.8224 3597.543 3853.0134 2381.4405 2381.4405 2589.2709 16862.1435 52306400 norb Nitrogen Denitrification NA Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 17496.4085 2432.7183 64086.5858 5157.421 7952.2659 7952.2659 6394.2109 4721.4878 459494.2083 6720.5451 2215.5552 9713.3457 7228.2562 6796.0458 2760.2553 2631.9029 364563867 ppx Phosphorus Polyphosphate degradation NA Anaeroglobus geminatus F0357 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Anaeroglobus;species:Anaeroglobus geminatus; 11995.9205 16237.0753 3675.4112 3739.5864 10666.6713 5028.5069 4654.7379 4654.7379 4440.9408 209125.8004 6070.5165 5251.3605 13480.363 6887.451 6609.3864 9598.7491 2915.7851 24124.4183 8671.1971 4644.7162 7108.3081 59184.1207 2568.1772 5960.6266 145596914 chitinase Carbon Cycling Carbon degradation Chitin Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 7881.5611 2711.7344 5518.419 10984.2219 7054.3657 3701.6748 3701.6748 11415.0901 6084.1146 6695.821 12071.8978 4794.7878 3583.1606 182415422 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 8470.3082 85373461 amyA Carbon Cycling Carbon degradation Starch Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 6717.2562 78093592 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8211.2099 5102.2984 5412.6993 4139.3523 52477.4715 4448.674 6708.7677 6521.6721 3632.2729 5021.4343 3771.301 2748.9876 5087.0122 6857.9355 2725.4353 11204.9742 4886.0034 7842.5698 4577.9908 5293.4693 8310.7795 373465127 amyA Carbon Cycling Carbon degradation Starch Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 13211.8705 6712.1317 2314.8867 2314.8867 5799.3393 3770.0507 1681.2394 214042411 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9033.9422 58278.0292 4434.8514 7404.9148 3521.5769 4545.1314 2186.1637 7011.7817 8008.2113 5760.9247 1930.8718 3248.3616 307632470 arylest Organic Remediation Aromatics Other aromatics Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 10063.9908 2822265 dxna Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 16953.2272 11036.1757 2839.8595 5687.3751 347367133 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 15550.3826 5624.7194 3070.5199 4170.9475 5323.2283 2441.9395 110665.653 4733.5218 9397.8797 7597.3293 3628.5091 7776.7908 5579.184 5130.0055 6578.5194 5540.435 2610.5361 7517.4143 2080.0972 11238.8307 4746.5871 10411.8745 3643.6021 3402.4213 12302.9378 2465.1564 9664.7317 313886266 amyA Carbon Cycling Carbon degradation Starch Porphyromonas asaccharolytica PR426713P-I superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas asaccharolytica; 8852.5737 3130.2975 10957.3136 7414.5652 61721.8904 5602.5884 15259.1377 6643.1617 6643.1617 11994.9283 6463.8942 10239.9738 2950.2064 18311.3372 8220.6696 5870.507 114335583 dmsa Organic Remediation Others NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 8225.8618 5083.7129 2127.8416 2127.8416 33520870 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10957.1865 167887767 mer Metal Homeostasis Mercury Detoxification Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9173.3002 2496.2448 5320.5875 2212.7464 2212.7464 7382.1071 210621513 ppk Phosphorus Polyphosphate synthesis NA Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hiranonis; 7654.595 2163.8165 54906.6269 5953.1577 2660.3846 2660.3846 254450638 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 8118.4239 306488099 nirs Nitrogen Denitrification NA uncultured organism 7219.3565 2848.0012 4369.7339 4805.1426 19809.9528 9076.1553 3538.0245 7308.4534 3063.6683 1999.3198 358456532 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 11392.8357 4498.7926 2592.2533 2760.1792 3220.188 2401.2209 92227.0985 3509.1672 5622.5779 5670.5139 5670.5139 2531.001 5138.0569 3322.0346 4781.833 3707.2508 2446.2214 2492.2905 7026.4922 3082.3282 10627.6031 4529.7193 5607.2537 3247.0307 3749.055 6273.0751 88643464 dsrB Sulfur sulfite reduction NA uncultured prokaryote 15620.2074 4792.7604 4176.3832 3966.1375 3545.9191 2778.1166 109702.4727 9834.7093 6076.439 11549.3167 29472.8845 29472.8845 8249.5104 3133.0249 2585.7606 11097.7271 8842.3035 22343.316 10835.3122 2077.5441 5796.0013 4402.4862 10090.7607 118439054 pgk Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 17438.1278 3671.1553 5942.5059 4683.8681 41480.3711 6178.3523 6626.4829 6339.6169 6644.6572 87621.7274 2519.1012 4278.0248 376383200 alginase Carbon Cycling Carbon degradation Alginate Klebsiella oxytoca 10-5243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 13975.3467 218529351 urec Nitrogen Ammonification NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 13644.0378 50553192 phospholipase_B_fungi virulence degradation NA Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 7650.5682 8744.4606 3172.0407 9992.8038 5064.2818 4650.7109 4650.7109 2830.0275 8583.0602 13305.567 19894.4898 8704.1842 7518.5779 2047.9448 3691.2194 5827.285 378782596 amyA Carbon Cycling Carbon degradation Starch Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 13876.9119 3296.1171 13144.9889 3935.8402 6560.1864 13223.676 14486.2274 18278188.282 7782.52 13953.5833 444403.7304 168022.4699 168022.4699 4091.3504 15623.9642 5662.7813 12224.6662 3969.1017 10762.6876 18586.9179 4030.9134 19937.1689 46610.4011 14435.5162 3347.8411 6755.9777 9881.2635 3210.5725 5779.6191 338212900 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 15474.2384 6536.3879 3428.3081 6125.0793 4538.0613 2658.7743 65387.6463 5035.1094 8691.8972 6438.1416 6438.1416 3247.8205 13388.3516 5750.8385 6682.5405 2833.3704 9875.8374 3360.5585 15889.3452 5167.1233 8784.1572 5883.4091 3375.9369 12476.7985 3683.1116 291460490 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 30917.1431 8189.7224 5858.2323 2916.0111 70673003 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 11807.5605 68914.8762 4981.5887 3390.2867 5212.7835 1771.4052 190698589 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 16616.8628 5754.8302 152144700 narg Nitrogen Denitrification NA Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 8602.8201 3355.548 2603.7633 4279.0052 57878.1216 6490.9791 8617.3363 2861.1401 2502.5786 261189963 cellobiase Carbon Cycling Carbon degradation Cellulose Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 9149.8572 194335043 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 23500.6809 4220.592 4456.4833 5203.2597 2465.6216 164455370 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 13740.8617 2630.3006 73868.8192 4267.5107 2104.9564 2104.9564 4407.2641 5904.0805 1731.4519 357599822 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 7848.5234 74038338 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11114.9838 3610.4824 4462.6472 4542.2956 6058.683 62842.4137 3786.0089 4743.4721 2333.1981 2333.1981 3921.7511 7673.4845 7854.6243 3378.5721 5316.2615 4899.5848 47885.7392 4394.3718 11979.0824 12222.0252 4984.1766 3785.8056 6838.44 8674.4993 227934977 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13285.4891 3306.2279 4964.7319 10154.7212 3945.3972 1850.231 2400.5087 3459.2049 2013.5803 149179129 amyA Carbon Cycling Carbon degradation Starch Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 8917.2213 21914.4205 3012.0728 9697.8352 364505591 hzsa Nitrogen Anammox NA anammox bacterium enrichment culture clone BS6 superkingdom:Bacteria; 9207.8377 2326.9779 8291.9551 11606.6844 3957.1066 3957.1066 42899.2516 8540.6385 1867.4465 358637424 nosz Nitrogen Denitrification NA Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 9596.2189 2454.2923 2584.754 3355.4509 3774.0695 3088.9273 3088.9273 2943.4459 2444.8535 5544.8272 4409.7869 2392.0876 3313.2687 3278.3457 10522.685 302673547 nagg Organic Remediation Aromatics Aromatic carboxylic acid Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 8729.8893 95888.4491 3848.0647 2288.9674 2288.9674 6760.2171 6430.0551 4233.4965 2300.553 6965.7268 2535.2558 8696.8666 4291.6948 6348.8248 3010.9692 3126.0954 3056.5813 5121.6686 383510816 xylj Organic Remediation Aromatics BTEX and related aromatics Thermus thermophilus JL-18 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 18888.9934 5666.0208 2859.1838 2707.6729 81447.4611 5703.6874 11600.5029 3858.9725 3858.9725 8201.0628 4394.3983 5450.0012 5684.9807 3399.6709 9596.9117 4373.0318 6142.4992 2188.7793 3047.8224 3778.6142 5185.848 366163758 chitinase Carbon Cycling Carbon degradation Chitin Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 9352.6657 116224961 xylanase Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 12544.4153 15642.2778 1805.6248 1805.6248 91201988 amyA Carbon Cycling Carbon degradation Starch Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 22420.0005 302204139 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acetohalobium arabaticum DSM 5501 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halobacteroidaceae;genus:Acetohalobium;species:Acetohalobium arabaticum; 18694.3291 33597275 napa Nitrogen Dissimilatory N reduction NA Bordetella parapertussis 12822 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella parapertussis; 9156.8348 4038.583 4271.3282 2530.0332 6644.0013 5484.4509 6248.539 2696.7758 352681663 APS_AprB Sulfur adenylylsulfate reductase NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 9050.0198 4322.6279 3436.3214 3680.792 7025.5766 80994.3688 6455.493 6921.0478 2385.8745 2385.8745 5595.4261 14631.5462 13057.4413 11208.935 11742.8861 12251.1665 4132.636 7085.271 10622.9952 5053.5156 22630.6903 7112.3259 11891.0545 4759.5856 5549.5716 8904.1198 5046.9731 7315.6101 237905925 bph Organic Remediation Aromatics Aromatic carboxylic acid Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 8468.7293 3072.2049 4928.947 128754.1554 5251.982 4043.1251 7994.4165 6577.1155 4446.3898 119458982 arsc Metal Homeostasis Arsenic Detoxification marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9149.2432 2699.5732 3024.4182 4506.3888 4287.2553 2877.451 2877.451 7233.42 4973.3489 5231.8187 3368.3742 11864.1279 4392.5982 5664.764 2294.1169 3471.2212 323281987 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 21685.8613 10114.8156 4313.9755 2429.0723 11220.5414 5201.6336 6843.4625 143359.5218 47037.109 9922.4743 4167.7465 4167.7465 3201.3374 14680.57 7916.9213 19327.596 17994.8349 5711.9202 2458.7517 4772.3961 9119.7393 4767.352 12707.5292 9177.6235 20358.6197 5304.238 3340.6293 4120.2952 4755.9217 10749.5559 339610768 amyA Carbon Cycling Carbon degradation Starch Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 23886.8521 50084262 ppk Phosphorus Polyphosphate synthesis NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 17862.9805 7608.8011 2822.1521 91502.4807 3645.4597 11643.1867 5986.7867 5986.7867 4986.1851 3927.3363 2149.4807 9045.2731 3547.8023 5438.4341 2644.8988 2680.6574 378725504 pcpe Organic Remediation Herbicides related compound NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 6631.8894 28032.9094 7714.3479 4377.8716 116621376 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 13197.4192 4700.4126 2207.6858 3344.8616 3200.994 2767.9138 6382.5725 2031.6616 6421.2311 5626.0066 2175.0553 2808.8184 2608.8083 160883696 alginase Carbon Cycling Carbon degradation Alginate Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 9603.9679 6529.1503 4008.9117 2616.789 4001.1181 3164.7115 392420833 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas stutzeri CCUG 29243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 17634.9993 4176.9538 5524.6691 212689048 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium pseudocatenulatum DSM 20438 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 10232.2138 16603.936 354805769 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 30912.4792 1894.0085 4954.2072 16189.3873 2442.0589 81165.6546 5659.1808 21540.1378 5732.6892 2745.3898 2745.3898 4042.6847 4254.1488 5431.6731 3829.2412 5725.6182 54736.2594 7557.978 2102.2338 3057.4134 3696.0464 182677457 dehh Organic Remediation Chlorinated solvents NA Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 19674.9492 9868.115 2302.0669 2528.5374 38632.9849 3197.8682 16377.9151 3947.6636 2278.1797 144905645 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13360.0803 3032.0557 3060.8045 1296616.1499 6906.9372 18741.6081 8231.6943 5217.5111 16685.8876 16949.7466 198270452 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 255886.908 193226339 FBPase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 14570.7053 5979.4813 112280226 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13379.9528 4344.0797 90856147 soxY Sulfur Sulfur Oxidation NA Allochromatium vinosum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium; 8809.0354 5312.9674 82947026 nosz Nitrogen Denitrification NA Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 7828.741 2622.8375 8215.8405 3956.9606 35957.341 67727.7919 14440.6414 4973.3149 3944.5623 3042.9538 3042.9538 2634.1647 6209.124 4402.4581 8954.1769 3408.1537 12915.7571 7420.9744 6112.5599 6234.3681 8241.9736 4541.9387 20724.1269 297571372 amyA Carbon Cycling Carbon degradation Starch Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 11912.3771 4984.0339 3316.6129 89093623 arsc Metal Homeostasis Arsenic Detoxification Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 9280.3159 126736929 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 9456.7409 3773.0453 5170.9607 3077.5483 3077.5483 307352853 dsra Sulfur sulfite reduction NA Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 23536.1667 9367.5178 65989.7964 3974.6871 4778.6025 7879.5346 7879.5346 3128.0621 3582.8534 14358.475 2110.5352 7901.6318 10713.2461 6100.0922 3615.3265 2594.0551 3722.5757 113880421 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 24335.5195 5012.6337 3121.4333 2051.9622 4284.7865 7519.9894 4039.413 4039.413 5923.4945 5641.2265 4510.7112 7238.7227 5939.4521 5448.095 3725.6219 374327256 mer Metal Homeostasis Mercury Detoxification Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 7856.3639 2487.3901 3201.7444 4205.3909 2394.2451 2394.2451 4449.675 3782.0627 380352088 Sir Sulfur sulfite reduction NA Candida orthopsilosis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida; 7703.1076 21446.0278 163262100 nirs Nitrogen Denitrification NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 8821.7927 2148.2701 2148.2701 3836.1506 10621.876 5787.8953 373118195 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 7_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 13704.5992 562233.1652 4969.2451 2422.2463 2422.2463 5014.2874 44683.8162 1762.118 2516.3176 8958.9593 26341.2684 403380725 phn Organic Remediation Herbicides related compound NA Paenibacillus sp. JC66 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14050.4053 7719.6231 2127.6329 74975.1354 8179.6621 4020.5693 4020.5693 6278.4191 3159.9705 4719.969 8436.111 3673.9593 5334.977 3495.3516 375141914 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 10000.9498 5266.2643 2674.6081 3424.1632 7796.8358 7767.2535 6726.3072 6726.3072 6382.0969 5847.6779 2661.5931 6879.8427 15708.9494 18352.0493 7050.8375 3236.1374 8676.4412 5148.2193 6516.1748 154334612 gdh Nitrogen Ammonification NA Leishmania braziliensis MHOM/BR/75/M2904 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania braziliensis; 39876.4439 8242.7316 4470.9397 5619.6321 2022.125 3235.3703 9211.1085 77820050 nirs Nitrogen Denitrification NA uncultured organism 7525.8686 3116.0033 6375.2634 213971802 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 13408.5097 88775986 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 11163.7606 5639.6562 6147.0855 2848.5416 2848.5416 3583.7039 257479111 Sir Sulfur sulfite reduction NA Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 23500.1532 27623.35 2906.7876 4139.123 3055.1138 119057.1302 5347.0435 3583.4824 7824.9148 3626.429 3626.429 6554.5509 6985.7027 681106.5123 3974.4124 9674.7055 8820.8899 9087.4099 10579.9093 7058.82 3796.5325 3558.6932 218677040 amyA Carbon Cycling Carbon degradation Starch Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 9616.1018 2257.3084 3034.8824 96879.7973 51511.5019 4383.3057 4383.3057 5056.33 7730.528 14170.3989 7501.146 2645.3737 4548.5012 7840.8311 2047.9562 7364.8233 63029746 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24102.6433 94471327 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9237.3975 4483.2054 2438.5467 3361.0808 3791.869 14387.9998 3666.5551 48527096 mcra Carbon Cycling Methane Methanogenesis uncultured Methanosaeta sp. superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 13759.506 315592467 terc Metal Homeostasis Tellurium Detoxification Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 11198.5371 2545.0832 5883.2405 3788.25 4568.8978 8674.8698 70758.6791 82796.32 4008.4984 2309.6619 2309.6619 19227.4622 10206.5341 5989.6098 12522.1595 8132.9796 10019.0346 4126.6421 3633.1858 8017.4418 7337.7851 11943.7235 7491.752 35502.2983 2074.4017 6146.2624 3826.3285 2742.5456 8595.7944 315001614 aoxb Metal Homeostasis Arsenic Detoxification uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 11377.1747 13514.7417 154084723 xylanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 28878.9733 2314.671 6568.2629 5968.8168 7001.5414 4190.503 4229.2858 2314.751 12311.8675 4291.6058 2955.4221 3680.1517 2870.2758 62149208 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 10654.0829 73012.0063 2414.2703 2414.2703 346225702 arsm Metal Homeostasis Arsenic Detoxification Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 35616.4342 8168.4489 28542611 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7707.2998 1944.4518 5042.6232 311113712 cellobiase Carbon Cycling Carbon degradation Cellulose Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 24291.6922 3267.2666 3267.2666 6019.6993 2986.2289 4772.0445 2625.8107 375302211 dsra Sulfur sulfite reduction NA Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 7198.4964 4564.2204 1953.1086 1953.1086 5764.9942 229380135 PRI Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 19408.376 7856.085 2194.415 2835.5354 4143.2665 75774.2723 3676.6369 9152.8363 6412.5443 6412.5443 25140.1259 6048.7192 5749.311 2641.4657 9310.6202 4924.637 6196.6377 2061.2708 2897.5928 15812.7062 307095410 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Bispora sp. MEY-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Bispora; 8929.2738 99030515 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 10533.3413 5900.4213 2217.0097 84050.3022 5218.2238 4218.886 5779.8053 4329.3143 4329.3143 5321.9497 1879.146 227506684 ppk Phosphorus Polyphosphate synthesis NA Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 24665.4225 27731.2465 16692.9778 4139.1801 4924.5482 4421.3718 5002.0483 2651.1972 8791.1162 5732.907 2355.4926 19340.6564 14759.6156 7310.232 15864.2583 4008.4701 6415.372 9131.8331 344338749 PRI Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 15774.6931 6085.3733 3369.1339 3703.0201 157891.5831 23448.9815 6539.5876 21964.143 51911.995 51911.995 9180.6153 3789.6515 3055.0965 3458.6146 22539.8426 5723.2572 4337.8004 3932.3785 149359410 ppx Phosphorus Polyphosphate degradation NA Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 8136.5317 2732.5502 3180.1189 58444.7909 8530.9813 3228.1837 2013.52 2013.52 5583.7334 4390.9977 59402.3318 13568.1277 2885.8917 3307.5359 378795.1632 5165.8679 220912567 terc Metal Homeostasis Tellurium Detoxification Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 6691.7428 7607.5098 2010.1371 2010.1371 5342.9498 6775.9711 3113.2156 85372897 mer Metal Homeostasis Mercury Detoxification Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 8253.5981 3907.9466 3907.9466 1064377.7002 76058450 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8934.7873 4170.8896 4081.237 2086.6763 2086.6763 7976.629 4771.5011 2197.9465 9598.2169 6779.6505 21761.3945 60100879 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8543.3056 5904.0044 2842.2136 2842.2136 5365.3316 29818.4938 142167.543 3765.7563 9378.2638 376384739 amyA Carbon Cycling Carbon degradation Starch Klebsiella oxytoca 10-5243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 56335.2239 20476.0744 5186.7722 128009.198 3605.1858 6506.396 3227.1976 3227.1976 6852.9832 7260.3729 8185.406 2477.7222 46157.8669 11400.8087 386757447 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. JS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 26025.1605 91673.2044 371720615 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 10144.6358 5768.741 225175438 mer Metal Homeostasis Mercury Detoxification Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 14000.4785 2575.2337 119494279 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 15660.1531 2227.5161 2227.5161 7073.8847 4946.6864 5231.0243 1647.3817 4518.4662 158521014 APS_AprB Sulfur adenylylsulfate reductase NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 31028.3777 2906.5144 2660.0397 77731.8699 5070.1708 3716.822 6987.0013 3569.1641 3569.1641 3061.2218 6575.5773 6218.9698 2932.6356 8792.9455 4944.2122 8153.6396 4005.7741 4173.0441 210634074 cellobiase Carbon Cycling Carbon degradation Cellulose Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 7997.6493 285026983 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 51145.5184 5088.8967 49802.8866 5442.3619 4169.3359 118692144 dmsa Organic Remediation Others NA Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 6450.5216 3191.7562 7911.0437 66489.1693 5896.7971 76057001 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7075.6451 5718.4175 3193.2576 72121297 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 9469.0994 8808.1021 4797.3203 2049.1361 3380.4227 5496.2789 8146.1942 77940.4307 7028.0278 19803.1864 4887.9187 4887.9187 2655.0429 8206.5405 7326.632 2579.2768 4003.0667 7329.416 3145.2697 11067.1947 8239.6588 8659.7375 2097.8784 3575.6817 7009.378 2241.3898 7049.011 288927312 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 10480.4715 6397.6417 3090.7117 11243.7972 2480.8293 77083.2578 5137.8777 14871.4895 8670.1569 8670.1569 4595.1701 91785214 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9009.1815 16516.8624 2682.7442 2857.503 2829.5869 3718.01 2233.2369 2233.2369 7747.2233 5463.8007 5072.925 7131.1364 3826.1182 2599.073 15127.6693 2706.7363 2825.999 3306.3152 4368.3084 7296.0539 112462023 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12774.7772 4421.54 3695.0565 4191.7292 1956.1882 7157.424 373554544 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 8069.4123 25888.9948 7741.0542 289691664 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tuberculosis T92 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 21493.7366 2235.8004 3679.2504 4541.5083 3670.0801 3670.0801 2630.4095 7849.8447 11828.9746 6993.383 113171.0568 2087.9267 2799.5043 2151.6348 440042340 narb Nitrogen Assimilatory N reduction NA Rhizobium tropici CIAT 899 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium tropici; 13727.7379 9558.643 3252.0714 2502.5125 6742.5949 9245.9127 4356.9488 3343.515 145046822 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 12165.9277 6820.9297 19976.3197 2389.7294 2389.7294 10363.7624 7880.0055 6634.061 1549.4645 3252.0204 3321.5904 118424424 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9360.5368 68241374 amyA Carbon Cycling Carbon degradation Starch Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 12208.009 6784.3416 2868.3505 6973.6612 4088.0154 17383.4956 7557.7792 4642.5397 4888.2387 33878.7485 3248.3208 2976.8958 9202.5939 4986.1155 6867.4179 2385.5797 3623.6644 2366.8232 388586870 exaa(moxf) Organic Remediation Chlorinated solvents NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 8141.6125 3461.9403 320138164 ppx Phosphorus Polyphosphate degradation NA Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 13066.844 5688.1458 4038.7775 2693.3982 4138.7429 7776.9931 2810.9426 11225.5347 8872.8532 8537.7714 6496.1884 2842.4635 337273065 terc Metal Homeostasis Tellurium Detoxification Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 11695.8799 13510.826 6263.1176 3649.7115 6330.0771 6115.1061 3375.9911 165880057 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 29867.4874 4772.9752 5985.0278 7854.6448 59852.6262 115390094 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 11504.9136 61723.2438 10857.9662 2151.7312 73534357 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 8594.5036 6147.4967 4202.0991 3414.6044 4154.5041 3326.8833 1913.3095 1913.3095 4343.7895 97312.3712 4253.3538 5095.4254 3236.3132 7640.6339 2617.3633 9356.4642 4678.7366 6684.217 8057.9077 5706.9119 345283701 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus ruminis ATCC 27782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 11645.8802 2138.4803 4808.7021 4549.9623 9235.6379 4925.8252 6290.226 2705.3953 6728.4016 2080.7217 3552.5379 5300.5552 302425314 SoxC Sulfur Sulfur Oxidation NA Hyphomicrobium sulfonivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 11039.0422 118171653 pcag Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 10267.4828 4542.37 21503.9017 4240.624 2232.5979 2232.5979 5841.951 6822.6044 46308008 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 51571.2425 2627.5409 353676973 tehb Metal Homeostasis Tellurium Detoxification Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 15999.8251 3904.1249 2360.9966 4888.9572 8341.2752 80992.9771 4688.7034 6355.5608 7016.9948 5113.0538 5113.0538 3958.3831 4025.2926 7187.0274 9039.4962 11320.7048 3104.9034 3602.9377 3980.1689 357011258 amyA Carbon Cycling Carbon degradation Starch Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 12967.5538 3370.8325 3728.9804 81671.3751 3781.244 3780.4923 1814.4005 1814.4005 3352.2677 2215.6432 6680.9565 7012.5097 2336.4907 3508.1908 2559.5788 17428552 ppk Phosphorus Polyphosphate synthesis NA Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7534.1599 4876.0817 327377998 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 7747.2427 34187.4244 226906750 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter sp. 30_2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 7833.701 2850.7739 4146.473 6872.7912 83503.4255 7861.9919 6089.7217 4530.4616 5298.8368 4819.9233 5121.1865 3289.6623 10269.1474 2620.4127 3188.4243 2188.2308 306529525 ppx Phosphorus Polyphosphate degradation NA Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 17369.2225 4588.2602 6354.8181 3092.3463 6883.9253 7346.0001 3165.6528 4698.0621 9736.2726 255325387 ppx Phosphorus Polyphosphate degradation NA Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 18342.6627 7308.2891 4768.653 3135.7705 5350.4176 63456.8976 3983.4024 3118.766 3118.766 3915.1727 6898.9765 7499.3345 3252.4321 29295.2469 3568.937 11648.5945 7989.5014 10677.506 3847.6141 4190.875 164455908 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 22234.039 3319.5126 77897.1428 4196.6611 2388.4294 2388.4294 9622.2846 4208.7022 1763.1928 261361265 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 8455.2896 3250.2023 20441.9058 6737.462 3413.5467 157319275 rd Organic Remediation Chlorinated solvents NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 8632.6887 3468.1805 2586.3031 2586.3031 5396.2134 6474.4622 344940323 amyA Carbon Cycling Carbon degradation Starch Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 7527.889 4869.3233 9627.9165 4559.9269 3295.1947 6472.6041 15043.3376 2466.5762 2466.5762 2676.8924 7855.2396 4941.6747 10118.6959 3262.5494 4654.8853 7196.2777 9197.0059 5939.5579 8159.8865 8511.8567 3977.5129 3243.0162 6118.0724 340356255 cysJ Sulfur Reduction NA Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 6773.0641 5247.4824 333787463 TIM Carbon Cycling Carbon fixation Calvin cycle Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 11039.073 99030561 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 10580.0514 5247.0878 4300.7552 8787.6264 64498.351 6025.2299 5091.792 4334.3277 2282.2568 2282.2568 2953.854 6494.7037 3108.5908 10016.6929 11033.0331 5357.1819 8349.8128 3068.7733 5218.9812 333997444 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 11883.476 115401802 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7283.7007 2063.5717 2063.5717 3740.098 359771916 amyA Carbon Cycling Carbon degradation Starch Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 20450.0117 4117.9 3689.7559 3689.7559 3536.7012 5196.9078 6182.613 6569.517 2964.1924 78220718 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 6276.9737 3195.4345 4545.5226 3683.9111 5650.5147 94471127 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8722.0697 261193423 glucoamylase Carbon Cycling Carbon degradation Starch Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8697.2447 11863.6797 2342.4016 4766.702 3584.6514 6035.8077 2724.901 2724.901 6716.3393 5428.8658 6862.4153 3240.8658 6237.1999 3125.8642 4648.4889 3896.0411 371721263 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 12805.0682 5463.3571 5395.3214 1909.5933 4666.9344 365423871 nosz Nitrogen Denitrification NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 13074.0862 169597295 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 12202.1302 8932.5589 4167.9782 1945.1481 3006.9455 3193.1318 8900.3116 6214.0321 11594.6522 5882.154 5882.154 67483.364 5820.7845 8251.3992 10681.1686 5968.2301 2467.1755 7989.7208 2800.1337 9902.2622 6186.2044 1618.1433 3909.2136 14038.6342 333410055 amyA Carbon Cycling Carbon degradation Starch Chlamydophila abortus LLG superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydophila;species:Chlamydophila abortus; 56587.7384 77378719 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20348.9349 2803.1952 5057.4759 8333.0803 15464.8061 14034.9007 134768.3268 6216.9708 7429.3686 7709.376 5699.6821 5699.6821 5061.7947 223977.0227 25713.4916 4317.6736 7343.1129 30049.1708 7192.2472 15841.9363 165080.3 5986.1943 24200.9726 16607.6331 35531.7682 10831.0901 6154.4782 64553.9277 10227.8236 342316588 aoxb Metal Homeostasis Arsenic Detoxification Pseudomonas sp. 15AGV superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7689.4753 4563.5181 20154.9066 5113.8496 5113.8496 154367887 bphb Organic Remediation Aromatics Polycyclic aromatics Pandoraea pnomenusa superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Pandoraea; 8860.7052 4153.8656 3157.8825 7088.31 3779.7362 4615.1283 4223.7067 5428.1216 2883.9535 8392.7293 5967.2938 7144.0856 2139.66285 3250.5231 2763.7855 2065.5915 5824.0335 118424485 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11044.1979 295091675 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium cf. saccharolyticum K10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 11306.725 2012.5161 2959.0431 4632.5074 4009.1552 4701.9007 3714.6448 10399.9462 2348.6436 6721.0131 10141.161 4299.4644 6925.4488 3302.0245 3530.6357 3393.1754 2392.7497 384094273 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8795.3389 6255.5199 2948.5621 2948.5621 3202.2149 86553578 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8391.9149 21471.1522 4618.2961 13109.2735 4478.5128 146300098 terc Metal Homeostasis Tellurium Detoxification Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 9094.1893 160347.0841 2619.2328 2619.2328 337276181 dsra Sulfur sulfite reduction NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 8702.9659 354543725 Sir Sulfur sulfite reduction NA Candida parapsilosis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida; 11913.2292 89347187 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 10181.4219 6885.3224 3674.082 2989.065 2989.065 4121.1605 2410.2094 3340.0977 86226.7453 110678192 cpne Organic Remediation Other Hydrocarbons NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9743.2427 7957.6575 11527.5355 5838.368 2714.5744 94983265 silicon_transporter Metal Homeostasis Silicon Transport NA 13006.3558 2487.0091 3521.805 1828.1322 1828.1322 5169.7586 1917.2378 8625.0758 1929.8829 2631.0199 333940501 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7757.9143 4316.5376 3420.7586 3847.4721 2743.0924 5679.6326 209899248 dmsa Organic Remediation Others NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 7989.5273 2537.8332 7441.5492 9553.8352 8432.447 5920.1689 169760293 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 15807.4736 221723663 PRI Carbon Cycling Carbon fixation Calvin cycle Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9204.3837 6203.1593 25779.0694 7017.8733 4311.184 6537.7384 11936.7593 7879.3354 276926.7666 17028.4804 44904.3042 5538.9044 10069.9663 10069.9663 3889.1095 7684.713 5001.9416 10697.1334 6303.4953 6266.0233 6390.8098 5683.0787 14621.6838 5478.8181 71252.132 6831.9493 8031.3056 9539.0121 18571.6498 7405.5085 3545.0748 28288.2627 323274977 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 9351.9717 52339.1078 1899.0786 1899.0786 3428.0491 4739.0205 5213.6665 1839.4646 227188302 amyA Carbon Cycling Carbon degradation Starch Lactobacillus paracasei subsp. paracasei ATCC 25302 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 11896.1789 12026.2897 4183.5498 5130.1464 4441.8369 4464.923 2974.5045 9265.1107 11490.0775 12595.7882 5296.6324 2625.3552 91783992 terc Metal Homeostasis Tellurium Detoxification Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 7338.7814 24411185 merb Metal Homeostasis Mercury Detoxification Acinetobacter sp. ED23-35 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 19630.0926 219848979 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 13978.0248 3651.9539 2899.8954 2800.3966 5022.8006 5931.0998 16381.7137 8444.4108 9468.7416 5484.471 11104.2216 5047.9391 7336.5834 3609.9317 11468.3906 5254.6857 10045.5612 7066.3503 7546.1251 3815.6581 4138.8205 3208.8312 2715.3822 6018.2213 63081960 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 8223.9279 86837.3794 2825.9167 134265838 narg Nitrogen Denitrification NA Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 9828.7441 7081.3425 2435.313 2435.313 2887.2016 308189227 terc Metal Homeostasis Tellurium Detoxification Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 9237.5688 198276562 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 14797.0794 2624.3819 4975.5231 33330.2946 3126.6037 2515.1413 147988.8286 15826.3962 4876.8051 4876.8051 14130.7037 5228.5715 6968.8321 4970.9413 4198.8548 5432.8482 21359.5773 2944.1132 4417.7031 8102.7626 4727.5187 5567.9383 5581.5955 5539.5436 157913494 nosz Nitrogen Denitrification NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 38099.9946 9524.4499 19239.9407 3382.6497 4193.9476 312745.7443 11042.2013 6513.4829 27289.7443 10640.7297 10640.7297 5787.263 18045.209 6325.2072 17533.1803 6080.0717 16689.0885 2980.662 9596.5748 10894.5805 25998.2113 2395.3369 3952.3229 7151.8674 219939251 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7926.927 150852905 amyA Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 13888.0676 2436.6201 2436.6201 403059757 trze Organic Remediation Herbicides related compound NA Pectobacterium carotovorum subsp. carotovorum PCC21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8703.2099 2316.3474 22035.6696 3814.3034 9425.1719 5045.6439 2641.6485 8413.6089 4155.3926 6478.1473 1933.4245 2891.7198 7827.9645 336006584 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 7129.9303 23633.7628 8961.7962 5159.5385 5159.5385 5723.1027 7484.487 5763.9237 31096265 pmoa Carbon Cycling Methane Methane oxidation uncultured Methylomicrobium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 9692.7795 261358199 pme_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 32887.5101 3196.6324 300313799 arylest Organic Remediation Aromatics Other aromatics Herbaspirillum seropedicae SmR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum;species:Herbaspirillum seropedicae; 11782.5653 225194130 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8189.6655 385867144 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 9278.3864 7156.3496 11065.0772 11065.0772 3898.3035 22440.4848 5004.3162 99083095 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9487.6571 3026.5648 3424.8455 4353.8692 3631.1924 5947.5943 7519.196 4360.9686 2614.3916 7244.2668 2946.1277 8535.0691 6961.7758 3263.5672 3596.022 2235.0492 4733.4872 62149228 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9722.7255 59053.2472 3042.4444 190894804 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 49176.2335 3709.2147 2107.4588 2107.4588 2452.1282 6450.3655 333735474 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 14850.1341 3028.6148 12379.5005 12379.5005 7224.6891 3003.9272 2613.1191 32895234 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13933.8083 4259.1284 302683064 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 28894.1498 4359.2883 3288.1746 3288.1746 5889.6465 4295.4056 4947.606 154495804 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 23873.9427 67450.6574 5300.5001 4006.9666 5606.8924 4038.5876 4038.5876 2891.3085 7219.0114 5480.4052 11712.9367 34366094 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9793.1024 3449.3575 326446511 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 21274.6433 9166.9191 4137.0798 8440.8302 6387.7684 6387.7684 7900.4219 5701.3692 5446.4857 3807.8666 6894.4764 3678.3214 19899.8111 8462.7553 8963.4426 5855.1907 3427.8755 8073.2271 3870.6109 109290262 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11824.8544 12549.0288 2528.7328 2528.7328 5615.3349 4585.2194 2930.6683 8645.7641 422314073 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7258.8075 7341.8496 3508.1257 2105.9468 5668.9505 1861.4883 3110.2997 2422.1319 7229176 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium ORI-2 superkingdom:Bacteria; 8960.2466 3266.6221 2530.429 19376.7388 23276.9803 18454.5836 170714.5876 6680.6273 11931.5355 6572.0702 3693.585 3693.585 8529.5709 5834.3896 6829.7189 12603.2866 6621.3842 2324.8841 4335.9483 6549.0528 3237.8558 20649.4171 7417.2898 10768.8103 4871.4784 4516.3559 9561.0014 2775.8398 4512.8075 108803052 catechol_b Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 9881.5139 3827.5923 40253076 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15444.9312 5314.1491 88929.4103 24679.1247 6170.9375 169772.5032 5129.1772 284048307 nitrilase Organic Remediation Aromatics Other aromatics Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 25591.2482 28669.4586 17026.075 4234.8659 12405.3487 4919.6974 4493.6695 4527.6992 3438.3683 3438.3683 6751.3633 10425.3261 4955.6144 20823.13 14152.1303 8188.5227 14588.2269 5660.9756 4189.0339 6974.1793 363613524 atza Organic Remediation Herbicides related compound NA Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 12841.3434 4056.1806 293325816 cysJ Sulfur Reduction NA Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 138959.5568 2017.6558 2570.8922 283829406 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Candidatus Poribacteria sp. WGA-A3 superkingdom:Bacteria;phylum:Poribacteria; 8102.5358 71863.6137 9970.5843 4222.2126 2137.028 2936.1307 345900004 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 37770.1496 4424.7929 3342.8952 2455.4724 12610.0982 12610.0982 6809.9789 1790.4654 193214175 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 8682.9819 6429.8064 5884.0385 2803.8012 3386.8124 8013.0891 5273.7876 5273.7876 3116.6392 2737.2856 3137.7093 12870.6659 4524.8838 3493.5083 238594028 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6400.4829 147676385 gdh Nitrogen Ammonification NA Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 26380.6744 6745.3624 9501.6042 5981.7538 2183.6111 4817.9968 4942.2584 485794 rubisco Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 12655.4485 35923.0383 7503.165 294636431 amyA Carbon Cycling Carbon degradation Starch Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 14542.6979 8955.2885 5543.4027 61579.5212 7724.7357 3639.8052 3639.8052 4491.7136 8218.1819 3717.9416 1938.6728 258567690 glucoamylase Carbon Cycling Carbon degradation Starch Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 10811.7573 296816022 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 6942.7848 4181.0304 2179.6235 2179.6235 116061968 dsra Sulfur sulfite reduction NA Desulfotomaculum sp. Srb55 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7773.9152 2669.1982 4197.1815 3891.3432 17628.6627 4519.518 2898.8004 169907872 dsrB Sulfur sulfite reduction NA uncultured Desulfobacteraceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae; 7593.4097 9868.8995 6025.9414 302343656 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 8405.3968 14571783 trzn Organic Remediation Herbicides related compound NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 13731.2119 3335.6947 8487.5114 2053.8415 7760.0276 3897.2538 2941.0636 256633.0128 10171.9888 3918.6559 6781.1969 6781.1969 5572.0295 11630.26 6069.585 6323.0683 10794.5485 9738.367 2740.0098 5523.9013 6958.3107 3096.1335 18371.1781 5767.8243 9106.3379 2067.4396 3920.0118 5691.5627 2635.257 6533.6285 91686225 cumb Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 9174.3973 6469.7427 253110.2419 9471.9761 7153.5175 295670726 cellobiase Carbon Cycling Carbon degradation Cellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9386.3473 47680323 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11469.8243 9190.5269 4342.2123 4489.9166 1967.4802 3638.2778 124363370 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 7966.1655 5031.2858 296164722 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 16555.7102 2080.0077 2423.463 3399.3077 5612.3078 3211.9427 10998.2255 6599.4111 3045.1108 3045.1108 4161.8514 12888.3091 7271.5887 5181.4309 2553.0683 2914.9876 9514.4863 2528.1167 18237.5391 9748.6551 9836.1326 4539.579 4867.3247 3653.2314 4675.2388 365174213 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Synergistes sp. 3_1_syn1 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Synergistes; 8172.0709 2706.1475 2738.3237 3714.4467 5966.1679 2531.0895 4678.2441 7529.4473 3528.589 9452.6029 9331.685 2149.5903 8258.1621 11723.0773 5084.1344 14057.7753 3115.0937 3393.3303 145231382 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 23306.6521 17099.8003 4764.885 3698.2683 3327.4807 3327.4807 6237.3434 6643.2813 398161439 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9569.6544 2310.869 17615.6351 158332627 amyA Carbon Cycling Carbon degradation Starch Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 8377.8055 7586.2327 2178.999 3004.3563 6057.3143 2677.3245 2677.3245 2707.3648 3549.3167 5676.4919 4299.8859 5254.7033 2607.6716 6764.5536 302407061 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 7457.4953 8079.5629 4854.3689 5200.5444 3767.948 2890.3343 2890.3343 12170.3034 2172.3195 260634686 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 8641.8831 327304240 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trichophyton rubrum CBS 118892 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton rubrum; 12088.9328 3379.4862 2766.471 152529.3243 5137.1333 4706.9776 4706.9776 4357.2703 7846.9242 8615.8871 10970.2329 2304.0479 6978.07785 6861.0129 4145.0984 3275.8324 7290.4442 51872741 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 15229.9395 170768316 tehb Metal Homeostasis Tellurium Detoxification Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 58545.8856 28385.3947 2380.0543 7957.0523 3776.6203 4319.7068 3660.2615 3973.2745 204332.7486 7856.4955 29152.4841 32012.424 14288.5197 14288.5197 2645.8761 14559.5656 10236.4645 3909.0683 13594.6042 6421.2025 21672.3593 2238.5089 13963.2012 12254.3208 12982.9997 3895.9214 14215.9956 8887.3418 228649173 tfdb Organic Remediation Aromatics Chlorinated aromatics Bacillus cereus BDRD-ST196 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 9556.2033 8850.4698 315666286 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 10035.9001 2765.3197 7758.6089 6514.3398 2495.609 1752.3701 6495.1164 366090454 amyA Carbon Cycling Carbon degradation Starch Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 8115.972 14330995 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus fascians superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 19099.8101 5240.7065 2434.8806 1976.1928 71486.0794 8001.9588 5168.4743 8301.0214 8301.0214 5629.942 31726.2367 4303.585 2322.4416 10227.504 18238.053 1896.3113 2902.3574 3396.0645 390434937 amyA Carbon Cycling Carbon degradation Starch Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 10700.3281 2666.9607 154852.4289 5893.4696 5102.3054 4871.192 4101.5944 4101.5944 6945.5926 3785.5052 4555.8022 6588.4684 6438.3728 6183.628 3797.3721 4835332 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11738.7479 4413.4959 2151.6492 4716.5752 2886.9202 2729.053 2362.5313 5469.8853 15006.9019 4620.0633 2273.0568 355334133 xamo Organic Remediation Other Hydrocarbons NA Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 7941.73 5589.5943 10552.6496 3536.5604 111073781 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 17746.7013 2214.6698 4811.4834 4057.9317 3550.7915 7372.2322 4104.9819 7961.4978 7720.7463 7720.7463 7145.6014 7544.5876 7750.6359 8296.8707 1960.256 3381.7139 112462829 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7375.3078 18794.5895 84181209 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiomicrospira kuenenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira; 9244.4422 5863.6328 116250432 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 11589.9092 19360.8684 119948920 oxdb Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 8529.3015 9991.5886 3381.398 7866.9936 3742.386 209549502 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 14391.1374 3613.2419 70399.912 5361.38 7727.1163 5052.2053 5749.7079 97685.881 3131.6091 3675.7416 6866.7292 291279303 mer Metal Homeostasis Mercury Detoxification Deferribacter desulfuricans SSM1 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Deferribacter;species:Deferribacter desulfuricans; 7563.6239 422314173 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7909.8126 260596008 ppx Phosphorus Polyphosphate degradation NA Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 6880.2711 9375.3563 4441.2115 2500.7818 2500.7818 7892.8238 6663.8297 307583834 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7544.1419 3065.6901 5474.8114 3394.4745 3790.1232 147569.4134 3577.4845 5380.7139 3011.1622 3011.1622 3750.0074 6186.2173 4980.2299 5946.8682 7852.2884 9186.9554 2524.7291 8135.7909 2652.1959 8464.0194 4352.3017 7546.5518 4387.3286 4059.0288 2949.4889 2621.977 7844.7098 148254625 one_ring_12diox Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6828.121 116296.6545 4687.6123 4612.464 5209.3129 2579.9406 147850880 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 9630.5666 343513013 rd Organic Remediation Chlorinated solvents NA Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 27656.8511 5443.2782 6953.2496 29250.6102 7974.4941 6208.8017 352093490 chitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7729.664 8481.5081 4824.8201 20578.5845 4234.8075 4365.2299 4365.2299 6000.3523 3755.7505 4593.4389 2199.8289 5990.2809 8175.0749 1667.0062 2829.0739 2213.0142 5424.039 324999079 cysJ Sulfur Reduction NA Pseudonocardia sp. P1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 10687.1083 6528.8892 5297.0548 4023.9071 4751.4293 6639.7836 4950.8523 4485.7641 2567.7295 2567.7295 10760.8615 8076.1472 10722.4959 7580.2321 5595.26 9685.342 19800.4983 13071.6693 11595.4086 12559.9343 5193.3926 4369.3216 6061.6509 3957.1641 384040841 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 7309.0974 2365.6189 5457.107 3573.9876 3573.9876 4010.8315 4317.1708 5001.9627 2026.4005 149230270 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 7028.2267 4285.4457 91864.6751 2974.2499 2974.2499 13697.432 3486.1541 4957.1271 6451.3243 2664.3922 6875.5825 5244.5019 3406.4795 102055.1529 3933.3401 4900.7669 6049.8128 6511.9155 4391.7848 384171079 sqr Sulfur Sulfide Oxidation NA Arcobacter sp. L superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter; 7294.0927 2111.5679 3486.7644 74906.1754 6087.5843 3670.8569 2341.6765 5280.4049 4719.2103 1715.9578 67985345 terc Metal Homeostasis Tellurium Detoxification Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 32042.0076 4047.0045 373251481 ara Carbon Cycling Carbon degradation Hemicellulose Nesterenkonia sp. F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Nesterenkonia; 11665.1401 6480.6916 3891.2122 6560.8658 4715.5024 4343.9526 9783.4077 11943.4189 6000.6898 5421.9255 126133496 cellobiase Carbon Cycling Carbon degradation Cellulose Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 7865.3158 92119208 PRK Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 10017.9378 39647574 badk Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 20462.5851 8067.203 3389.6745 67207.1094 7981.5195 47628.7722 47628.7722 2925.5039 6992.7962 5617.5285 6028.7478 2063.2464 57998217 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7090.7981 2524.9692 3718.2193 4167.3978 7295.9399 6509.8403 2548.364 5208.1746 2666.0149 3271.9511 3311.3917 345138507 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 8789.1228 64300.3882 3365.0585 363984515 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio velox DSM 12556 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 19138.1924 8169.3897 2161.1099 5362.3929 83244.1274 3927.8648 9530.5311 4580.7423 4580.7423 4451.1652 2336.9076 9409.3806 4929.6385 5205.6063 326335549 ppk Phosphorus Polyphosphate synthesis NA Capnocytophaga sp. oral taxon 338 str. F0234 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 338; 14726.8351 8261.948 2401.204 65742.4197 9227.3393 4152.6488 4152.6488 3770.2661 7624.2005 2658.1649 192360117 arsc Metal Homeostasis Arsenic Detoxification Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 45952.2306 14798.6721 369843178 bend Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10149.345 7457.7584 7457.7584 20479.07915 5566.9878 192897610 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 9404.6246 2096.4214 2096.4214 2672.0113 260911499 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 18239.4677 3006039 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus sp. 'Florida' superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus pulmonarius; 16848.6951 8371.7271 2846.2077 77499.3591 9605.8814 5107.3075 5107.3075 3392.9441 9060.2258 4732.4704 2193.5936 118590605 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 14035.4185 4304.6846 5580.3022 4186.4691 24069.3339 323364558 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 7857.9718 9511.5207 3559.2394 2956.4634 3850.1033 2561.5375 2561.5375 3920.7588 3515.1195 3271.1805 3578.6837 4651.6277 365093048 ben_bcla virulence NA NA Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 15478.6984 5236.4053 366157334 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 22828.5434 3469.1772 89919.6598 4198.5163 2373.9062 2373.9062 2968.433 8769.6505 4396.7553 4030.5403 6623.9467 2909.1037 6038.6151 5819.5667 2291 3164.0204 7932.081 2822.3207 7617.0739 63029731 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 39569.3505 13654.108 5128.7224 4226.4966 140319.2429 11095.2272 7917.0644 18467.2915 8438.1219 8438.1219 3700.1081 10047.6013 7218.467 8714.4097 13965.0402 11022.2164 5652.9124 7625.134 2561.1853 4186.4344 225874287 mer Metal Homeostasis Mercury Detoxification Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 6984.8851 2144.791 6886.815 6597.0058 5862.4092 28631579 gdh Nitrogen Ammonification NA Giardia ardeae superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia; 7183.6486 4009.6244 5858.7546 9897.9534 6438.5015 2456.0673 9889.9055 2369.9772 9490.0334 4310.455 4895.821 3080.381 2926.2925 364004209 urec Nitrogen Ammonification NA Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 8606.8376 86554196 Sir Sulfur sulfite reduction NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 11541.9143 3166.661 37157.6577 10928.7715 10928.7715 17805.4274 6648.3094 3524.3686 28877.7145 195722.1226 369839710 atzb Organic Remediation Herbicides related compound NA Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 12864.9721 373852473 alginase Carbon Cycling Carbon degradation Alginate Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 20324.8964 6606.7989 3395.83 3840.5446 332666918 poba Organic Remediation Aromatics Aromatic carboxylic acid Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 6767.7301 89333.3519 4474.8808 23499.817 23499.817 6822.4014 32434.3796 3973.8513 21892.2503 144759.4767 4303.6251 13846.5753 2249.0683 4115619 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 15959.5007 912436 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermoglucosidasius superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8860.402 10041.7786 3381.1658 3091.9978 6736.4505 5475.149 102291.5722 4705.1907 5561.5698 5561.5698 9140.9275 10037.3611 5609.5502 9962.6714 7233.6689 4865.8053 3872.473 3245.3082 8726.0751 2913.2767 19928.2774 5975.6532 8318.076 56818.7243 8289.3071 4396.4971 5115.4814 9456.1034 189436087 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 43755.9711 4875.1171 13361.0356 3515.3927 8887.7766 2171.2413 256828094 dsra Sulfur sulfite reduction NA Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 10873.0024 357010206 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 20187.6263 147886058 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9882.0767 4084.4415 2077.6821 3451.6764 2192.7603 2192.7603 3165.3135 254786111 atzb Organic Remediation Herbicides related compound NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 15920.701 2753.7716 5051.6327 4813.1805 3095.4054 2325.2507 323365938 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 8735.9374 55116.0902 6030.5391 372271587 SoxC Sulfur Sulfur Oxidation NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 24591.875 3192.6056 3192.6056 228471267 ppk Phosphorus Polyphosphate synthesis NA Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 8093.9031 2598.1904 67121.5367 2445.1186 2445.1186 5707.1686 5906.8848 3344.6257 3617.5041 6869.0421 11154.455 6980.9832 9961.9823 2333.3983 4377.8249 407788393 one_ring_12diox Organic Remediation Aromatics Other aromatics Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 23375.8329 5721.584 32222.9195 3659.1469 3897.6812 129364.6314 4522.2624 5866.3076 15910.3504 5802.9123 5802.9123 8468.5177 5239.0874 3165.7041 9519.8392 9474.62 5291.7242 16250.9365 2261.5375 59957128 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 17373.1419 5754.224 2517.7952 2517.7952 4102.1466 110589272 dsra Sulfur sulfite reduction NA endosymbiont of Riftia pachyptila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 14683.8646 83840956 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7560.5704 13596.0542 2563.5085 3256.6256 2988.8579 5057.8971 75109.9515 5409.4146 8325.0184 2283.6844 2283.6844 7474.0624 5078.5747 4287.9177 2644.104 2756.3123 2890.5445 10224.6598 5208.9011 5781.9802 3023.0537 4582.1622 300333196 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 11199.4102 3128.6438 4881.0342 9641.0553 1947.0841 1947.0841 4407.1771 5663.7539 7508.1498 12386.2356 7000.2355 7359.8504 2798.0303 3447.5567 296850292 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 13513.0139 61756.7498 3974.7935 7666.9857 3369.2706 3369.2706 2671.463 375079026 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7426.8595 124271055 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas paucimobilis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 37612.7544 340555821 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 11378.9327 73762896 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11266.9819 325168417 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 7781.2564 2246.2902 13249537 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8860.5337 2327.5409 9525.4577 75546.7149 2153.2363 2153.2363 4239.6731 6955.5389 2680.2883 6820.4297 7277.0269 6883.207 2160.7943 353187840 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 23590.3551 4950.6173 4014.147 3539.7687 2633.5425 7574.3338 3535.5573 5799.7423 147736210 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga petrophila RKU-1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga petrophila; 9816.8118 5319.9991 5928.6189 2356.6436 2356.6436 377572051 cpna Organic Remediation Other Hydrocarbons NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 9770.1312 1682.245 167621704 alkb Organic Remediation Other Hydrocarbons NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 9687.8706 5270.4376 3062.0685 6226.9365 34622.1194 374322632 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 11588.2917 3609.3292 3975.2583 3928.0876 2651.3243 8029.9533 5342.4371 3975.2956 7627.655 5838.1788 3825.6043 5829.6968 2364.6173 6643.3748 12683.0581 5944.1743 5280.5937 8435.8928 2550.686 359836950 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 7736.2456 219543239 amyA Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 9148.9136 19531.1137 2887.4759 6509.8715 111902.9175 5442.7441 3758.2644 10021.4557 4801.7291 4801.7291 3657.1051 2248.3484 4566.0455 3028.9599 335881089 amyA Carbon Cycling Carbon degradation Starch Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 15447.6665 283785701 amyA Carbon Cycling Carbon degradation Starch Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 11363.7839 4408.4508 6983.4304 121699639 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 1629661.5647 229791268 amyA Carbon Cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 14806.7892 7978.3628 2223.0041 10039.9195 3896.7379 3896.7379 3701.8916 7297.7959 4815.8516 332377224 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 18524.8498 55031.4048 4798.9129 4372.7225 69187.11 5048.7341 5672.8324 6212.9266 4806.249 4806.249 10757.7105 36492.5496 3217.649 13717.5883 12833.5337 15073.429 2738.9395 4087.7237 8635.5503 5511.8441 288800256 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 299 str. F0039 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 299; 34064.8293 260850313 mnp Carbon Cycling Carbon degradation Lignin Gomphus clavatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Gomphales;family:Gomphaceae;genus:Gomphus; 14569.0537 4785.0002 5254.1046 3662.0709 4282.2361 5568.4455 5568.4455 3095.9135 7285.504 4273.2223 2573.4905 5682.4567 9542.9169 5001.3261 6418.0987 2748.309 3572.4076 2850.6187 78063343 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23112.0934 9091.1012 2424.2532 2424.2532 6029.9377 29773.3427 5077.8522 3838.5415 18514.616 5906.6309 288328778 pula Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 12072.2686 5135.3639 2833.4781 2833.4781 163962144 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. FALF182 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6552.5988 3712.7334 52169.1832 81235.6735 5069.0776 3832.1497 3832.1497 7581.4771 3191.9079 4464.6125 5835.1987 1684.0678 294790448 pula Carbon Cycling Carbon degradation Starch Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 7196.2049 3808.9254 3934.6352 3080.1587 3478.488 226240654 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 9700.6572 5997.2506 2146.4208 2146.4208 3816.2204 5118.8653 50542708 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9645.4252 4949.0457 4307.4803 55285.4631 4920.999 5286.8036 338311237 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24869.4771 7689.7435 3845.8584 100004.369 3794.6554 5017.0997 12011.5227 6054.1107 6054.1107 6284.4066 4707.3704 3148.9699 10970.0911 1970.6317 5819.177 1780.0621 517120 rubisco Carbon Cycling Carbon fixation Calvin cycle Hydrogenovibrio marinus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Hydrogenovibrio; 8207.8576 3173.8443 16639.6464 2301.5351 15369.7773 3040.7104 54016100 linb Organic Remediation Pesticides related compound NA Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7033.0721 2049.3171 2536.5469 57519.752 3900.6317 4370.5728 4764.5294 7489.8435 2231.4977 9497.3599 6842.3843 2930.4841 2935.788 4814.2053 2450.9909 5158.667 392597801 badh Organic Remediation Aromatics Other aromatics Coniophora puteana RWD-64-598 SS2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 56044.0932 54314.035 33989.6593 6687.8188 7218.3832 7966.9426 8823.7978 2696.5733 2696.5733 6417.975 8697.8488 18008.889 5027.0947 35792.1448 35097.8816 16078.3015 32227.5048 7947.2421 8461.8123 13938.9115 119766820 linb Organic Remediation Pesticides related compound NA Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 7831.0909 408767161 ben_bcla virulence NA NA Azoarcus sp. CIB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 22547.7103 392406710 amyA Carbon Cycling Carbon degradation Starch Anaerobaculum mobile DSM 13181 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum mobile; 9339.1343 5346.3418 2785.2036 8539.7141 5553.3852 3347.8737 3347.8737 3178.9851 10702.6044 2724.0357 7546.6643 9363.319 3150.897 147886094 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 10946.5743 51195.8004 2068.7192 2161.3634 2161.3634 5731.3982 146188556 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7576.8818 5446.0816 13688.9004 55099.5393 2294.1652 10503.3597 4296.8669 5035.6355 2727.0033 3533.6638 2184.8343 4130.93 4121.4086 2166.9823 8302.3518 149131492 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 43485.2651 12235.5935 5227.78 7752.8457 5177.769 5177.769 2931.2755 3214.4502 255957257 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 19519.5291 17838.7124 6312.3817 3149.5779 3523.764 2174.2507 118506.2108 3915.263 5485.9351 12167.1918 5699.3917 5699.3917 7544.3068 4102.2368 17990.9369 10619.253 10030.4469 4560.1426 6817.3926 5012.0958 2564.6948 3264.2237 88857166 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 12507.9602 7942.9084 294898642 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 9566.1814 9124.6274 4310.8488 4122.8717 3058.227 6541.8035 9018.252 6677.288 8496.8054 5404.0376 3994.9021 12653.1219 6273.3773 7485.5576 3317.7921 7014.9924 3797.8462 2369.0601 9352.7349 108463273 alkk Organic Remediation Others NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 13713.5366 43042.2095 5034.9662 11467.1579 34483273 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 47911.3503 10246.7967 13030.5381 6052.328 9895.5165 11719.8262 556209.8167 21074.0054 19488.1834 20761.6757 9306.8895 9306.8895 4078.3023 15399.5555 33430.9488 4991.6629 6360.4616 8196.401 22018.6499 12417.3316 3181.0534 53451.6116 69682.4254 14946.1419 7281.4834 13328.9765 8795.6873 217503023 catechol_b Organic Remediation Aromatics Other aromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 10282.0144 225571390 tehb Metal Homeostasis Tellurium Detoxification Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 7646.8633 3353.2569 4185.5134 2503.568 4484.4199 3968.3778 2618.4612 87839.9009 4047.3524 7119.3466 2510.7563 2510.7563 2754.9981 12041.4524 6372.1001 5310.3396 4998.0175 9077.1604 3809.0079 3939.0082 9729.3272 3526.027 12840.9354 4088.1502 8267.7701 5730.662 5921.5413 6255.9741 3922.7918 14654.726 373892765 chitinase Carbon Cycling Carbon degradation Chitin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 9742.7242 4705.0918 4433.3073 7429.128 4964.0247 83316884 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7520.7314 19037.4564 5432.7219 2521.3855 3074.953 4809.3019 7016.8353 4504.4396 4504.4396 7905.9102 13793.4871 7844.8805 34008.4154 8187.1299 17471.0146 8795.0276 18688.7607 7742.7079 149376271 pcag Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 6914.4242 2306.8166 2270.1572 4311.3831 3124.3015 3124.3015 4561.8942 8999.7876 2443.4433 3161.465 6180.9516 4076.3449 6205.7119 2179.3005 3707.1573 3990.2149 1887.3497 153807500 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 8061.9019 375093252 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora marina XMU15 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora marina; 8382.2691 4889.1302 4762.0311 7332.0581 3737.9065 2533.6287 374413660 dsra Sulfur sulfite reduction NA uncultured prokaryote 8881.9919 26150.8712 73358.6223 22439.9325 6852.1532 3946.8506 247611.59 4133.877 3917.788 4318.5575 4318.5575 3877.4828 7885.4427 6283.8933 5391.8421 4967.3857 3021.1049 8643.4389 10231.9369 8646.5105 5781.2882 2953.5889 3457.2565 3848.8556 4917.2722 5998.1743 320450065 terc Metal Homeostasis Tellurium Detoxification Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 12759.2638 8611.2276 20511.9893 4204.355 15211.8953 12828.2237 5571.6933 6790.7669 2661.4989 2661.4989 2686.9238 8202.9199 5070.0057 21020.9892 5177.3286 3294.1091 6655.0348 3219.2733 4219.4572 14087.3684 3021.6918 5121.7857 10358.1279 2387 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 15481.2371 2434.9562 2589.1382 3576.4594 3885.647 4528.9176 4097.7828 2218.9887 10067.514 1875.1295 305857038 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7260.5172 58748.6249 5259.9983 4728.6753 3226.4381 111073753 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 16621.4361 7427.7108 2076.9055 146188551 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11503.1513 2814.7662 37925797 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 16331.4404 3523.5371 50885.2756 6068.1818 5637.0124 70344.7007 9270.9936 4819.4707 30246.9897 3460.1277 11148.6066 24797.2772 4217.5004 18964.6981 6473.2859 4907.5042 4373.0914 7359.333 2602.3203 22484.5504 9551.2056 12237.3417 7492.3731 6212.8965 6340.9306 39776.9349 8745.6124 283817794 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8016.33 3940.8007 143419.622 5163.3761 8046.3778 18546.3278 14133.7399 14133.7399 6714.3349 3231.3263 10103.9393 2477.1095 19019.4255 6993.3106 6388.4086 2722.1163 5146.4048 159038742 linb Organic Remediation Pesticides related compound NA Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 9401.5208 99030621 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 10304.828 6025.4323 7524.6304 4440.7303 6647.4374 11318.5463 4484.5194 4480.2607 8370.7221 2958.5589 3447.8807 3525.2741 3398.2066 361958496 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. ACB1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium; 8313.5776 4131.2138 315649022 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 8587.4294 283810411 tehb Metal Homeostasis Tellurium Detoxification Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 11523.5994 3564.549 3020.0222 3439.1184 5433.2738 5849.3539 2925.5371 6376.9152 4286.5278 6007.2769 2451.4457 2397.8465 219536883 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 10238.4909 6127.4844 116061987 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13514.5124 4409.2551 9262.5818 2849.4338 2849.4338 283379468 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus salmoneostramineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 9011.0978 375140288 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7781.9385 3714.2262 1911.7851 1911.7851 10392.7093 5082.3598 2604.6022 2937.6869 242277706 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8156.063 88790372 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 10279.6277 4999.018 8850.9798 3143.725 6255.0715 4222.4572 76112.0025 3915.3824 6908.9774 6908.9774 17485.8839 17552.8536 2813.6219 7218.8022 6599.7529 13615.7265 5130.5008 9239.7834 1807.6954 5741.9953 3730.9917 84383826 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 8870.511 17144.9592 3343.7661 2569405.1883 2558.4882 1618.7863 2435.2417 77458944 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 9460.4924 9540.2479 2556.3656 2556.3656 2050.493 365286579 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6586.9847 83317000 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13312.0876 7264.5397 4462.9571 2873.1681 2873.1681 7246.7953 296415448 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 12393.7454 2897.9601 67351.3452 13320.2621 3355.8487 3355.8487 3310.8745 8057.6253 22652066 chitinase Carbon Cycling Carbon degradation Chitin Serratia liquefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 12014.0744 4558.9978 2395.348 2395.348 5451.7896 5027.6708 2103.4923 118748744 vana Carbon Cycling Carbon degradation Vanillin/Lignin Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8495.0036 1869.4848 2599.164 2033.5727 3809.4389 5705.1622 105836.9693 12348.8252 5812.3753 4400.9632 4965.1489 4965.1489 3388.4188 9598.5186 6544.4751 7351.2543 15527.6872 2770.0502 5109.7382 15573.2482 4676.4244 17797.1756 7532.21 10372.8739 6435.7184 5266.151 5802.8274 2352.9436 126707075 FBPase Carbon Cycling Carbon fixation Calvin cycle Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 9141.2169 6103.4693 6784.5136 3926.2855 3182.4931 4341.891 69159.9943 6769.2605 3885.3006 4633.488 3304.8937 3304.8937 4483.5617 8914.5718 4717.8109 4616.6696 6330.9589 6936.4569 3198.0592 8243.0822 15611.2954 4761.8011 6712.5286 5374.6326 3696.135 2055.8093 73538063 amyA Carbon Cycling Carbon degradation Starch Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 13790.5431 3381.8751 13840.2126 13952.0609 3976.2302 162417.043 19889.011 5319.4544 7429.5768 7429.5768 3948.0256 8185.2558 184769.3567 4190.7795 29641.6983 3453.253 15797.4132 28043.2367 7933.6793 6347.2518 6253.5719 6450.7988 6379.618 324319441 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 10468.0004 8806.2001 3920.916 120974.0828 6549.4189 9199.1348 2879.3592 329902162 dehh109 Organic Remediation Chlorinated solvents NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 6350.0102 3659.4172 3992.5994 5764.4985 1612.8199 3735.0472 361854535 amyA Carbon Cycling Carbon degradation Starch Desulfitobacterium hafniense DP7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 10261.4214 2156.575 2156.575 383826122 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 10605.7107 6255.7765 7891.86 4967.3137 27853.6643 3913.479 13097.4113 345445163 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 8559.2767 302913696 phospholipase_B_fungi virulence degradation NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 7209.5264 3109.2994 3762.5515 3372.8042 68613.1337 9229.7194 3727.4827 3727.4827 3235.8877 7718.6235 6310.6295 6700.6529 5921.26 3013.3722 3631.9304 9616.1554 6576.7512 6787.3998 1651.7275 3305.3025 4562.1326 3047.0431 6293.026 40746284 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 20336.2444 2332.2284 6181.4239 3846.4806 3846.4806 5825.8859 6485.0435 7725.8483 4146.3054 5895.5799 3130.6438 347584283 amyA Carbon Cycling Carbon degradation Starch Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 65539.87 422314239 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16395.9733 7872.3938 2079.8512 6022.8979 255720212 phospholipase_B_fungi virulence degradation NA Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 15425.2603 4915.0288 2183.0916 69651.5992 7859.1514 4609.5615 4609.5615 3614.6186 2339.5735 7719.7887 116334775 ara Carbon Cycling Carbon degradation Hemicellulose Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 14963.5094 117924864 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 13893.4553 3422.0124 2426.0548 4083.9032 4177.6747 2345.8501 167852.0508 6417.2001 6113.2191 2437.5407 2437.5407 3265.2202 9025.9639 7697.8155 9801.5367 7842.4903 8017.5555 2698.4936 2787.5314 7251.2594 3542.0149 12349.0099 7810.015 8629.5956 3152.0788 4549.326 5707.2101 3046.2381 10993.4567 119459005 soxY Sulfur Sulfur Oxidation NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 24042.3596 58999.9792 4110.1962 5184.8607 18077.5201 180414.1622 5923.02 5547.3121 6625.0945 99137.4929 99137.4929 8508.4431 7354.5592 4826.086 5345.2535 4331.2594 11550.9112 3901.9438 15771.2425 7215.0147 7520.9568 3376.7965 4171.2999 9058.2772 9157.711 32476146 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 7786.2244 261283330 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 18218.4128 5527.7072 2788.0077 256587094 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 6969.8746 2927.9473 4582.7675 4582.7675 4611.1597 11672.6032 3937.4406 3017.7079 3568.5707 2224.3348 334120678 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 12275.4701 3758.7004 4294.5597 6297.2 4426.6525 4942.5983 2088.6112 3721.7632 2719.2619 28542639 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8739.897 36664.8918 21224317 nitro Organic Remediation Others NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 2915671.003 2975.6686 4505.3306 2153.1363 2153.1363 4438.6649 381365322 amyA Carbon Cycling Carbon degradation Starch Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 24201.6282 67024.3306 4625.8072 3497.846 3497.846 5331.9324 302562175 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 24712.4645 4869.8304 3914.8776 4614.5429 14131.9017 68395.8613 3817.0062 16962.0214 4784.9515 4784.9515 6913.9392 7604.5242 5986.3592 2865.0521 7720.7731 2615.9852 7362.9661 5340.2897 3745.2904 3244.2814 384078378 cysJ Sulfur Reduction NA Stenotrophomonas maltophilia D457 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 8158.4156 16941.4481 4294.6922 3157.2076 254524094 phn Organic Remediation Herbicides related compound NA Stenotrophomonas sp. SKA14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 8070.4544 12963.4058 2529.9844 4694.5297 2765.7036 325923531 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 11487.812 5936.6957 3058.1605 3058.1605 5278.2829 5211.9427 56677514 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7008.5488 5260.2284 77378783 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7846.1966 4110.9058 302035694 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 19369.7309 8452.3777 2165.5397 6657.7798 5939.5503 5389.4251 81323.9107 5892.7198 7629.2825 4048.2582 4048.2582 3959.8663 5578.3395 4021.2618 4009.6256 3733.4585 12486.4663 2227.6196 7983.1567 8704.991 8986.9036 4846.0183 3982.6409 4541.9156 2488.4343 219666776 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 63967.3848 6308.1401 2105.168 9084.1126 58981.8507 2610.1251 2771.4784 6276.5888 196210182 terc Metal Homeostasis Tellurium Detoxification Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 8719.7606 333603785 arylest Organic Remediation Aromatics Other aromatics Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 8006.1139 2893.7811 2111.0543 71442.4028 34591.8238 6473.5685 3664.618 3664.618 23691.984 3114.5821 116195526 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9634.0055 7394.7955 7205.1362 3005.3626 6154.4286 9381.4963 470255.2796 3727.619 7208.4575 3439.6141 2927.262 154317330 lactase_fungi Carbon Cycling Carbon degradation Lactose Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 9378.2624 22099.8273 5757.3927 390519443 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. CL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 14049.9866 7020.95 195974653 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 7923.918 315258540 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 7880.1084 341588268 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Peptoniphilus sp. oral taxon 375 str. F0436 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus sp. oral taxon 375; 7409.4375 2220.7609 324971652 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 11268.4413 6404.208 2166.2118 3976.9922 8256.6355 102654.7547 4372.9106 4347.0144 4978.162 3225.1205 3225.1205 3768.3749 2666.0215 2343.4083 9171.1121 6835.7092 9798.5469 2799.2048 4871.7766 91788001 nagg Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 20000.54 7384.0051 4578.2094 77899.1927 6464.616 5116.9742 12949.9402 6534.7744 6534.7744 7007.2059 4903.4319 9863.7219 9461.0908 10198.9636 7952.4638 2054.8439 365424722 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 12726.3226 11058.7742 5558.3895 6591.7272 3512.4007 6452.8023 6606.2207 2833.6225 8061.6797 2703.2732 3306.4709 15512.9803 4882.175 171678269 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 31517.4945 6866.3701 218666320 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 68254.7857 4799.2139 4316.4431 3438.9399 8617.3747 4152.7103 8291.171 5550.4834 3922.8495 2695.131 2610.9715 3678.1777 14300.7259 3610.9451 6166.4259 2806.8189 28271289 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 68142.8809 1986.4003 106056.7927 3159.1412 3159.1412 6680.792 3879.3685 7421.0503 7724.2334 3047.5469 2902.4158 7695.1618 9891.0464 10274.8674 3080.8874 12025424 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Amphidinium carterae superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Gymnodiniaceae;genus:Amphidinium; 15706.0637 26867.9237 7793.817 77689.3286 4946.9268 5195.9484 5121.864 5121.864 21073.1372 7032.2072 7483.6485 2754.8009 11820.0994 8191.7255 5969.0449 6852.9863 392670519 amyA Carbon Cycling Carbon degradation Starch Bacteroides salyersiae CL02T12C01 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salyersiae; 19973.9898 5146.5729 2417.5659 7435.0489 3657.9727 5817.2504 2956.0473 2956.0473 26707.9439 3194.5412 2314.1419 17237.2939 10092.3308 6755.1578 10083.2794 6581.3546 3756.0071 83573380 dsra Sulfur sulfite reduction NA Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 10259.0507 3433.1919 2888.2591 5443.3448 6320.7831 4431.7692 4957.5008 2870.9224 2870.9224 6912.2988 6707.6755 2397.2897 13260.7714 8934.5277 3329.1706 13210.4958 13353.7862 9053.381 3995.0975 4401.111 5832.6879 2308.8827 88816182 mer Metal Homeostasis Mercury Detoxification marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 19761.3343 5131.1578 67433.6781 4753.8719 2065.1995 2065.1995 7019.4006 4006.111 4760.4282 251791344 alginase Carbon Cycling Carbon degradation Alginate Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 20071.0718 9095.9036 2928.0791 70020.364 8699.0159 4873.3316 4873.3316 5975.7634 3912.4539 2328.4413 9411.2999 4790.2098 1735.8686 3044.4392 163855935 TIM Carbon Cycling Carbon fixation Calvin cycle Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 275311.5317 2066.2813 10760.4287 2587.7906 3548.0288 1693.1278 5139.0494 2150.4303 63081888 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 14343.1889 5054.2266 2148.2619 2148.2619 4340.3489 4796.3623 4683.9232 2427.8248 182439074 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 12759.9014 3560.811 2480.3088 3484.4963 5410.7501 1903160.6751 3826.8281 5303.9899 4975.6668 4975.6668 5858.0835 14355.1734 4586.8939 5903.3882 9047.0469 2638.6638 2028.035 284390216 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12774.6377 10716.4617 5161.1682 62892.7226 5024.626 6599.2254 5012.5187 10322.8748 10322.8748 3095.2677 9633.0071 8648.9178 4329.0127 26358.5922 3474.188 12745.2948 23726.765 8268.0833 7885.4493 2683.5194 3571.8309 383335090 amyA Carbon Cycling Carbon degradation Starch Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 15987.3847 7907.5932 6253.3062 224521024 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 23345.2371 4769.951 19070843 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 16544.3618 3840.229 5570.1005 11623.7954 6652.657 6956.8839 3957.8343 3522.9994 3522.9994 3270.9056 4132.2666 3648.8832 6587.4914 2650.5524 10514.7025 5080.2108 6726.4219 3810.9968 3242.6546 6300.1593 389722266 chitinase Carbon Cycling Carbon degradation Chitin Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 7702.4054 3432.3956 2307.8603 4620.427 8589.6274 2501.4784 61112.4288 21896.2144 5146.0648 7041.2207 6248.1406 6248.1406 3061.2908 6725.7792 4693.9819 5018.8456 2866.3133 5907.217 7548.283 4472.1772 2865.9438 4013.9705 3783.1945 330996609 RgaE Carbon Cycling Carbon degradation Pectin Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 7572.4082 5388.9141 365291624 catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8042.9528 288553494 cda Carbon Cycling Carbon degradation Starch Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 10820.3485 4004.1598 4252.0786 218143150 mer Metal Homeostasis Mercury Detoxification Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 8688.0315 3828.5359 5185.0711 1782.1729 2970.2434 6985.9933 5625.0127 325694928 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK150 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 12398.9954 3006.5818 3006.5818 6302.5037 383704195 terc Metal Homeostasis Tellurium Detoxification Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 11859.394 6082.6744 9696.5258 255112576 dsra Sulfur sulfite reduction NA Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 18507.0034 3396.0017 3104.7251 12607.7023 5185.7645 3291.4631 3762.6573 3762.6573 5114.6295 3672.2939 6235.406 4258.1974 10485.0373 7856.9574 7959.0693 2376.2282 2384.8576 8296.1562 3859.0553 8036.7639 342825880 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 9246.4116 90418326 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7749.4445 3902.803 73348.2458 3335.93 3335.93 5434.8144 4719.3679 3334.9654 7206.9166 3910.3345 5765.5403 2177.2245 4105.3836 311285639 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 30019.7033 4956.6307 7756.9841 4082.9396 6788.1797 14539.6701 5256.0299 14025.6133 3687.0244 4591.898 6381.4891 4023.7674 399896.2077 117949588 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11889.4465 5770.0917 3572.1122 4669.0966 84786561 ppx Phosphorus Polyphosphate degradation NA Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 14782.3416 3175.4338 12173.2859 3976.2811 5445.5305 83854.6205 9196.6041 3517.8956 7430.8478 7060.4894 4420.864 5196.7635 6236.2757 12068.7464 5959.6227 8067.1365 3760.7763 4224.1357 2456.7284 164455820 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7881.8596 3661.1407 3096.5836 2916.232 374413661 dsrB Sulfur sulfite reduction NA uncultured prokaryote 10365.783 5503.4062 5281.1199 195039.2144 9722.12 3693.1165 3693.1165 373880773 alkb Organic Remediation Other Hydrocarbons NA Stenotrophomonas sp. MS192a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas; 7076.7103 4766.4075 3652.721 3652.721 6152.015 6064.4681 2565.4228 2778.8224 6310.0361 1819.2632 3201.2783 333373701 chitinase Carbon Cycling Carbon degradation Chitin Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 13570.7821 5134.7529 63183.568 8389.974 10782.9871 10782.9871 374099058 urec Nitrogen Ammonification NA Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 8955.6442 2652.9221 41976.6524 38574.0561 4689.9183 4529.758 4529.758 8468.1913 6387.8603 6805.4789 15591.3492 4596.2638 16488.2736 37016.6454 2364.6584 8129.626 5234.8062 2174.5189 5538.3941 78219801 amyA Carbon Cycling Carbon degradation Starch Desulfovibrio alaskensis G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 11989.0664 12427.9164 2952.8968 25026984 ppx Phosphorus Polyphosphate degradation NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 11264.6974 3473.4583 2329.208 2329.208 5644.3903 5212.1558 118474078 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 9666.3237 4712.0797 61303.0432 4212.1298 1953.1931 1953.1931 41594.1479 5023.3725 2248.4878 7368.722 3035.2052 2773.6827 2003.8455 119026048 mannanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 14399.4892 2784.0266 4305.4162 3630.5559 4987.382 4818.2568 6833.1226 2747.4488 288570216 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 30687.6963 5033.6291 59859762 EF1a_Stramenopiles Other Phylogenetic NA Phaeodactylum tricornutum superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;order:Naviculales;family:Phaeodactylaceae;genus:Phaeodactylum; 34845.1228 4873.1487 3550.269 5232.0357 4642.2584 2817.5798 2817.5798 3326.6092 2443.5341 7274.8156 7272.12 6163.1022 5411.3092 2023.2627 2875.0436 336302591 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 14852.7132 6744.8748 11516.5291 4988.881 113875094 mer Metal Homeostasis Mercury Detoxification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 8405.0558 12659186 nifh Nitrogen Nitrogen fixation NA Treponema denticola superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 10900.6193 8454.9759 8344.8129 6381.3271 384055453 nitrilase Organic Remediation Aromatics Other aromatics Acetobacter pasteurianus IFO 3283-07 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 11891.525 5196.8397 11251.135 5703.5708 5696.6567 339007389 alkk Organic Remediation Others NA Brevibacillus laterosporus LMG 15441 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 15663.4619 5354.7653 347584811 amie Organic Remediation Aromatics Other aromatics Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 10503.1594 2985.4292 2118.4928 53157.71 3498.3651 5968.9125 3543.977 3543.977 2841.7427 5054.4094 4604.6222 385888946 dsra Sulfur sulfite reduction NA uncultured prokaryote 31962.0111 4998.4396 388427736 cysJ Sulfur Reduction NA Bacillus aerophilus KACC 16563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8803.6429 157846793 arsc Metal Homeostasis Arsenic Detoxification Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 10913.9043 423697367 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Q8r1-96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 11424.5293 225574166 pula Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 17168.6774 5000.0155 5000.0155 2588.5766 83955827 mer Metal Homeostasis Mercury Detoxification Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 20421.8343 8032.4265 70687.7751 3034.4515 36482.541 11991.3344 116068566 chitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7838.0242 3964.5121 2294.5677 2294.5677 197159.4287 10853.1161 15686.5825 680565.7426 40235.349 2586.7625 6528.0233 1793.8552 344039367 nhh Organic Remediation Aromatics Nitoaromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 83003.9982 34975.1239 15775.7574 5260.5883 71920.4765 166478.8622 11732.7086 12636.74 6012.9308 4229.0944 4229.0944 3125.082 15258.6201 146046.6005 6702.6984 16064.8253 3322.6325 38382.3973 8047.5658 6728.9389 5102.8157 4764.9484 10934.3478 2785.8977 154083746 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 9401.2432 119512553 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 20072.0747 4284.9446 9299.582 1992.6986 1992.6986 2976.5611 3097.7296 5326.2409 3797.1102 7515.625 4308.6355 3556.1795 299135491 B_lactamase_A Virulence Antibiotic resistance Degradation Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 7061.9331 4696.08 6172.2722 13903.2004 10045.4695 58799.7967 384914785 cueo Metal Homeostasis Copper Detoxification Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 11974.682 4415.4013 4394.8008 2430.9165 5685.0118 7791.0108 3169.9086 123282.3949 7479.1715 5412.7221 6436.2287 3782.1039 3782.1039 7594.9428 20849.8769 21981.6758 4282.8123 9601.8295 13947.2538 4072.5713 6712.2284 21294.7068 3728.6516 26895.7736 10743.1968 14600.2075 5410.6653 8728.0059 8940.2351 3099.694 6934.0137 372476103 beta_agarase Carbon Cycling Carbon degradation Agar Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 37730.0864 3710.6916 4932.0793 6334.4987 2718.9155 104868.3461 5003.1661 6585.3333 19628.647 5120.0375 5120.0375 5294.0885 7484.117 4860.3905 3782.9433 11657.5939 6070.4861 11094.3917 1924.4699 3807.4507 5201.9266 2072.5484 37925729 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12384.4252 3855.5904 10458.5544 5581.236 55558.137 7394.7762 5033.6975 2431.9473 11275.7022 5786.9301 8326.1116 5361.3527 6899.6178 74053804 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 22271.67 3067.5781 5335.0552 2231.0709 2231.0709 7938.4462 3276.847 8531.0997 5834.852 1921.6621 162423668 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 9777.9662 66983.8086 4238.6815 3888.492 294874438 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 13835.2054 5377.3037 59721.8132 4189.7904 6436.9806 4448.2254 4448.2254 5900.584 3919.6017 6735.9702 27693.1308 3408.8509 5622.2355 148554450 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 26092.9541 291454240 amyA Carbon Cycling Carbon degradation Starch Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 12280.7819 7208.2069 5603.9896 3519.6444 4644.929 2694.4175 381014.9267 3365.7003 5399.8069 3937.4856 3567.0019 3567.0019 6964.9172 15468.6661 5554.8953 4412.1087 6231.3821 2258.8305 48324.7039 5684.2861 7015.4854 2558.446 4908.5608 3221.6027 2462.5108 208007851 PRK Carbon Cycling Carbon fixation Calvin cycle Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 13555.293 170077507 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 11202.8357 3055.7673 9047.4977 19246.7162 83581.9654 33411.0233 33411.0233 4910.9108 7316.6346 4830.657 133754617 phenol_oxidase Carbon Cycling Carbon degradation Lignin Agrocybe sp. B354 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 10232.6682 5490.6413 289707445 hzo Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 13676.3811 30180.8397 4763.4619 6692.0442 3740.9521 10121.0221 5467.8791 4468.6558 4414.6861 371777011 ppx Phosphorus Polyphosphate degradation NA Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 15222.6989 6715.7884 13994.2777 2575.4432 2575.4432 6500.3274 145370929 linb Organic Remediation Pesticides related compound NA Sphingobium sp. MI1205 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 10976.17 58427.9593 3247.6684 3846.7733 2825.3113 311342196 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 21248.4418 3703.532 5257.9509 14835.761 4479.4652 4479.4652 4532.1339 2180.2525 5122.6169 3350.583 8651.938 5578.6645 7109.6919 2601.6922 9477.2934 12673.8409 144906142 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 38073.7827 144032.9354 255258525 soxY Sulfur Sulfur Oxidation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 90508.0267 12580.5513 17056.8618 6963.4729 4834.3867 384253.2167 13026.3073 8728.8905 35671.6131 15884.4192 15884.4192 3351.0651 21442.1293 8100.065 7367.612 19590.1755 5143.533 11840.9873 15438.6671 34135.2773 2859.7742 4291.3877 8295.4868 207367125 mnp Carbon Cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 16743.9471 19491.2059 19491.2059 7016.418 5397.3955 5611.0545 1947.0492 198404183 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. WL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 9116.6733 6158.9072 2779.8895 3857.0437 3857.0437 3761.8657 15048.6544 2421.95505 4795.4095 3011.7459 91202266 dsra Sulfur sulfite reduction NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 11044.6177 13277.9424 5662.6113 4371.6858 1632.2035 158523658 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 11007.5024 54572.8809 11327.5967 7402.7595 255084890 actin_Viridiplantae Other Phylogenetic NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 12419.6374 11715.7143 2500.5165 5656.2463 71546.9305 49218.6605 4632.9883 3033.3385 3033.3385 6742.5323 4520.8298 4935.2542 8655.9679 8447.1851 7029.9218 3378.6647 4213.5774 167596212 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15510.9089 46475.7993 5205.2286 8758.0669 5234.8029 6685.3762 5520.4659 300261539 gdh Nitrogen Ammonification NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 21311.4861 2409.1889 14053.8564 6679.6485 3586.9496 3161.3409 8359.5862 17332.2485 4759.4171 2475.3195 3396.6117 3920.0553 9930.7333 5600.1502 3224.7561 5225.9304 4440.5541 2984.3448 215512185 norb Nitrogen Denitrification NA Moraxella catarrhalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella; 19130.9618 3034.9694 4505.4856 5628.6321 2965.3518 3739.9246 11135.649 4736.8632 7695.7839 2686.8458 3322.1418 7963.6373 8632.8612 213405397 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 9143.3747 309393247 alkk Organic Remediation Others NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 7804.18 77378573 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12048.1152 1076573.7134 2016.594 2016.594 3343.9987 8301.4979 12614.6127 8951.3617 16824.6685 9603.5794 62424023 ppx Phosphorus Polyphosphate degradation NA Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 7970.1145 3068.8251 103595.0876 4835.9848 4835.9848 5087.1491 10789.7972 3343.5097 323525434 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23372.5518 3733.0849 3512.0137 5902.9107 5829.16 6968.9775 89388.5352 4434.0803 33340.7107 33340.7107 4782.8028 17400.1594 9527.4882 7135.8576 6392.7258 6994.6671 3519.2225 5738.3934 7652.2369 8431.8932 27632.2095 14733.4777 14611.2049 5905.6782 5300.586 5746.8899 11000.242 6825.4596 375089982 amyA Carbon Cycling Carbon degradation Starch Facklamia languida CCUG 37842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Facklamia;species:Facklamia languida; 15930.2642 2760.7459 2854.0863 73592.7072 6984.8307 4622.1993 2665.4636 2665.4636 6421.4006 5195.0606 4645.8272 2477.4039 15450.32 25782.5081 6319.5923 8229.3629 3684.1784 4387.3686 5235.9885 269786385 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 20449.1359 247545282 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 14720.393 11938.0157 3137.9972 60467.9278 5195.9634 6558.7269 2104.0087 9264.3151 299749836 exoglucanase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 12514.5187 5300.7948 112857.1965 5487.9285 2620.6185 2620.6185 5420.6546 256582822 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Cryptobacterium curtum DSM 15641 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Cryptobacterium;species:Cryptobacterium curtum; 8320.5014 5316.7125 2272.5312 4111.1461 4528.656 5716.3956 2276.3607 3142.6106 157374446 dmsa Organic Remediation Others NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 18164.727 347750862 terc Metal Homeostasis Tellurium Detoxification Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 10757.8593 7655.8476 4853.7602 124515080 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leptospirillum sp. Group II UBA superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 13549.8333 2806.1982 4055.7511 6119.4144 88709354 amyA Carbon Cycling Carbon degradation Starch Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 25433.439 3149.6976 5108.9932 6257.5176 3338.1624 6095.3986 4688.8164 2599.447 5117.9974 169769194 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 10484.7568 4514.181 290467929 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 8105.2077 4234.5857 4589.2046 2457.2299 2457.2299 108771244 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8503.55 2059.6179 2059.6179 39942844 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7044.1401 5368.108 3006.6235 7241.7928 4763.9995 14613.3246 2968.3606 4059.919 8472.9283 7534.8896 4250.1921 12992.2218 5341.6933 299800789 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 10354.3624 12013.0879 2730.7587 2730.7587 18917.626 60326796 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8832.1614 4596.0659 116794.876 6462.5409 36237.8716 13145.6064 13145.6064 409020141 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. DCA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 9447.355 34072.1102 163742729 pgk Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 12883.5711 302530423 alkb Organic Remediation Other Hydrocarbons NA Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 17930.7581 2367.188 110710.3695 5002.5751 11966.9216 4087.9078 3272.9402 332974409 nirb Nitrogen Assimilatory N reduction NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 12292.1033 5715.4253 2146.5158 2146.5158 6240.9589 46912146 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7400.4355 4878.9152 30956.0654 37267.3587 37813016 mmox Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 10389.7434 260647377 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 21589.0657 7859.2159 4684.4097 6609.3769 136893.8722 5571.2466 10094.7963 26248.608 13882.6934 13882.6934 2851.3087 9169.5755 6606.9558 7408.1803 12240.2507 3182.5171 3649.5556 12393.2221 3328.0383 17798.1387 8009.3719 7710.4396 3659.0571 7451.0973 3995.9818 342796238 arylest Organic Remediation Aromatics Other aromatics Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 7439.4957 3923.2429 3674.2824 11261.4689 4154.3408 87704.0974 5336.8085 7232.3004 2035.9457 2035.9457 2579.0239 6027.2016 5458.4947 4425.9654 4569.9225 8488.475 2725.0418 2104.3968 9016.2025 4152.2007 8129.3228 5832.1319 7696.7059 2633.0257 3522.1713 3676.0477 5052.8422 224368080 nifh Nitrogen Nitrogen fixation NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 8547.0888 4440.3903 183982989 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 9764.1215 3507.1869 3507.1869 115259424 atzb Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 16434.0191 4410.783 60809.0377 5738.1821 13621.9297 3200.3384 145965930 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 19782.2784 71909206 pgk Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 11623.0544 5721.8803 85226.5254 7298.7606 189201718 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10269.8191 6291.5194 5899.9917 3777.3913 374348802 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10798.4363 3685.7625 4243.5838 3474.0163 91637.1354 3932.8706 5902.8291 3034.5452 3034.5452 4807.8688 6838.9819 7880.9504 5654.5102 4864.3573 3178.3818 7497.2588 4991.9944 5446.6607 2544.3027 4854.9331 2785.1699 6955.6239 323470184 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 71770.0541 226722.7614 7900.6066 20960.0903 5555.6008 5057.946 5057.946 8053.1541 70870131 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma cruzi superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 7846.2825 2160.0104 2265.9602 2651.6684 4878.3016 6916.6177 3636.326 6351.4689 4582.5768 2295.0049 1823.2864 2496.5383 3422.8514 316950911 Sir Sulfur sulfite reduction NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9031.6495 14741.8234 303315855 nirk Nitrogen Denitrification NA Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 6950.653 5545.1964 2701.61 2701.61 13996.6877 328810859 ara Carbon Cycling Carbon degradation Hemicellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 19962.1686 5979.8644 2490.3369 3001.486 4001.4412 2334.1437 265064.5518 3785.6043 4967.8282 4932.8555 4932.8555 2937.1587 5662.0184 7441.3406 3942.6383 4077.0826 5223.7231 3886.3335 7104.2511 2615.5694 10049.8562 11233.6409 7771.3278 2226.9004 3692.9991 2434.7385 5251.4756 383704966 pgk Carbon Cycling Carbon fixation Calvin cycle Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 16432.4161 221724461 pgk Carbon Cycling Carbon fixation Calvin cycle Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 21266.0176 319413899 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 13496.8668 3898.3521 52079231 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 7267.5396 5433.2234 2930.9292 13027.5428 4136.6644 2529.5165 2529.5165 4191.9281 291277318 napa Nitrogen Dissimilatory N reduction NA Helicobacter mustelae 12198 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter mustelae; 55882.0086 4795.1064 4793.0304 7070.0029 3282.3464 3282.3464 5879.5859 4301.8452 4430.6274 2586.5462 16391.4147 11723.1306 4820.5371 6393.2332 7107.9111 3314.1442 261835498 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 13011.1083 12310.3683 8974.1567 271868.8477 9697.95 9934.3758 8166.3894 6791.9659 6791.9659 8432.5295 10667.7842 3430.4425 3339.7179 6950.7632 11163.1071 7508.3249 17520.9528 2898.3612 6028.0049 11190.0865 3017.1842 23821270 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas sp. VB-2002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 10050.3405 3407.5861 2335.6886 91188.0273 2303.3916 2303.3916 8238.1863 4402.0332 3945.6263 1906.7718 2801.38 2093.4254 187734877 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 17272.902 3407.5344 4510.779 3327.3615 3656.8185 3853.2509 5386.4723 2248.9148 5622.0569 8668.7954 5188.0067 2684.3429 6639.6779 2877.9095 306981203 tktA Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8853.619 5900.7583 4672.1546 3482.0106 9387.4575 2798.3426 238617613 actin_Cryptophyta Other Phylogenetic NA Rhodomonas sp. CCMP768 superkingdom:Eukaryota;class:Cryptophyta;order:Pyrenomonadales;family:Pyrenomonadaceae;genus:Rhodomonas; 11522.6698 3480.8624 2856.6516 5083.502 5893.6595 15042.4644 2467.986 5317.6323 3876.9991 14575565 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 11230.3666 2237.6194 2031.6613 462197.4129 388390583 arsc Metal Homeostasis Arsenic Detoxification Escherichia coli 541-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 16122.0099 156030450 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 23730.3341 83756406 amyA Carbon Cycling Carbon degradation Starch Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 19856.4165 10131.2851 5521.069 115257629 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 7445.5976 2399.9386 5460.1885 56696.5382 3714.2316 1962.0759 1962.0759 3874.3978 4712.7126 4109.7975 3579.9121 319790291 ppx Phosphorus Polyphosphate degradation NA Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 8462.6516 3015.3065 8225.2663 6012.6023 2441.9121 3296.0837 5716.1574 349600574 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. spizizenii TU-B-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 16169.3387 9700.2699 2431.0054 3478.7908 78587.0212 8138.1618 5107.105 12066.6754 5593.3751 5593.3751 5150.1625 4922.0605 46913619 terc Metal Homeostasis Tellurium Detoxification Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 7351.2454 1843.0049 4694.6805 3199.1055 3608.9359 13358.8634 70645.2672 4868.1009 7204.2897 2606.3946 2606.3946 6745.3776 3700.8253 4365.0417 4105.9513 3483.8972 3424.0314 12697.7042 3677.0196 4296.9209 9805.6715 1956.4769 4132.8603 7080.6736 2065.3656 4809.107 151580348 linb Organic Remediation Pesticides related compound NA Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8014.0897 3707.2195 163759176 ppx Phosphorus Polyphosphate degradation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 11550.9006 8700.8856 5668.6833 5668.6833 5153.2267 3683.6488 21239746 bmo Organic Remediation Other Hydrocarbons NA Pseudomonas butanovora superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 7868.0461 7483.2329 326802004 phytase Phosphorus Phytic acid hydrolysis NA Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 10858.4154 5393.6669 2567.155 4536.4374 5280.0507 3880.1376 7128.0456 393702958 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 8971.5568 2305.6468 3317.0788 60355.4654 4070.2427 1857.0342 1857.0342 3516.1026 4037.0921 2270.2841 2505.3951 9901.7797 3666.9023 6393.0715 2433.9205 2857.5481 4633.1776 3816.9278 77378612 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 20877.4501 4352.9195 297629988 chitinase Carbon Cycling Carbon degradation Chitin Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 11724.8841 6603.6199 3326.7708 3326.7708 5978.1789 219741434 FBPase Carbon Cycling Carbon fixation Calvin cycle Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 11638.2859 11414.2901 261414557 aps_apra Sulfur adenylylsulfate reductase NA Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 12982.5779 5046.6615 6392.8608 7104.8108 2375.2515 2375.2515 3455.7267 374332677 arsc Metal Homeostasis Arsenic Detoxification Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8583.6588 9823.7562 3636.0844 3636.0844 3296.4058 8290.8865 5712.3041 257473641 amyA Carbon Cycling Carbon degradation Starch Atopobium parvulum DSM 20469 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium parvulum; 17201.2568 4534.9882 84956.1274 6201.2794 21081.041 7627.8849 7627.8849 339612459 RgaE Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 87830.5265 5203.8325 2155.4716 5081.8012 2037.5981 8629.6286 1722.5295 15303.5172 303256697 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium 1_1_47 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 9285.2478 31121.9298 2356.8294 3063.22 340800.6589 2424.3958 2424.3958 2397.827 1978.0457 2088.1806 5363.8495 16490.062 5701.9364 2321.5357 5245.7097 6300.2189 109454943 soxY Sulfur Sulfur Oxidation NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 7507.3976 84312.9377 2321.6989 2321.104 4586.4063 3051.1548 118223.6374 5290.9865 5608.5192 2180.4128 2180.4128 2698.2806 8473.428 3733.08045 3439.7154 5727.9089 6509.0837 2358.8706 7896.3015 3616.31625 9185.1299 6366.9892 11388.6557 2510.14135 3036.6874 2689.7948 7251.6997 150955520 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 13047.369 35187.1599 2050.2322 4779.0017 4900.9392 3127.7333 148971.0729 4807.3306 4307.6893 3751.9778 4148.9507 4148.9507 5642.5678 2900.9093 7482.4364 8627.171 8412.9374 5612.7446 2585.2399 3799.2095 2876.3642 2331.9478 170721163 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 9727.2519 4029.5622 5527.2244 6428.3117 4697.7269 2708.3873 2708.3873 3183.5393 7131.9902 3919.7975 4407.5673 26196.7085 3868.7705 7197.5048 2138.8661 2728.1847 3502.7252 1971.0696 386433976 alkk Organic Remediation Others NA Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 7161.2098 2890.5225 1944.4347 1944.4347 238591844 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 11808.8491 162568581 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 24001.2444 1972.8288 3470.51 7168.6063 5545.3141 3208.1413 6307.0445 2327.7202 2327.7202 3400.2347 4249.6201 14248.2969 7701.7025 9563.4317 4567.6085 6194.3582 3391.7948 3011.0226 118197434 nifh Nitrogen Nitrogen fixation NA hyperthermophilic methanogen FS406-22 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales; 8187.8236 255034299 pme Carbon Cycling Carbon degradation Pectin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 9793.8585 23191.5916 398363813 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 8374.4173 5023.5694 193475.2306 5524.7641 8120.4536 4513.7717 13249555 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8922.4907 10138.8716 3069.0519 4473.2491 6960.1592 9880.4609 9211.6854 11247.729 6284.1368 3760.0605 38479650 rubisco Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magnetotacticum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum; 9955.006 5235.729 5287.1891 6220.7264 6748.2382 6748.2382 18217.905 5186.5441 5904.8795 2286.4251 9088.6575 5263.5801 5421.8562 4013.2239 3005.7991 3031.2372 6695.018 313159641 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 10371.5764 3724.7616 2243.8987 1933.0633 3433.795 3468.5887 3455.1874 2865.1724 3346.9003 2774.1711 5637.5597 8092.8999 3555.4159 6703.6913 3692.9439 4068.038 3717.9769 4920.7209 93356203 SoxA Sulfur Sulfur Oxidation NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 10334.4702 6589.4212 3018.4273 5952.1233 4729.3421 84471.363 3360.396 3322.8313 3322.8313 3227.3709 6941.6719 6876.588 14964.2212 4566.1463 2651.1676 3756.5997 6818.8201 3877.5282 12769.0269 10504.2237 6754.5435 2043.2296 3447.6483 12330.2477 2876.0272 6447.4571 375144073 ara Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 20980.3501 7123.5501 11309.598 3442.8524 3891.5227 158680.3371 4603.2373 8334.858 3227.0391 3227.0391 3451.3858 10416.5819 5497.0365 5287.9826 6273.5797 4553.3573 3695.6308 9991.0674 3926.2567 9084.0271 6417.999 7726.4239 2929.0819 3766.4935 4505.6522 20271.366 354564541 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 8377.8091 364566835 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 8917.0746 55540868 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7757.9135 237405.0904 237720188 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 29587.0661 207090051 terc Metal Homeostasis Tellurium Detoxification Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 14124.5171 24712.7426 2757.2386 9096.0111 6617.2745 29652416 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16924.843 6441.7167 20123.8411 2482.3686 1987.8488 118738719 ophc Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 10033.5296 3650.5445 21239.1268 2446.4212 4270.465 10913.299 3408.952 5689.6018 11710.4602 4655.0385 3055.6513 12727.48 10515.195 10487.9808 3550.679 3864.0342 4323.3476 3063.2001 160356549 ppx Phosphorus Polyphosphate degradation NA Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 30240.2199 300866335 nira Nitrogen Assimilatory N reduction NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 14720.5431 6869.586 5370.7178 7348.9187 2058.1457 2058.1457 6519.606 13168.2383 4347.3643 5337.488 6231.5564 12313.8182 3828.3263 5193.7249 2578.1048 3158.2844 7199.518 2093.4133 6353.0676 56809431 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 22457.7835 2530.8366 2530.8366 4167.8151 7157.3165 1761.1598 2493.7526 83592941 amyA Carbon Cycling Carbon degradation Starch Rhodospirillum rubrum ATCC 11170 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum rubrum; 9969.2551 2808.383 3259.1478 6584.1394 88870.6737 6222.4852 4336.3074 6434.6482 4750.6825 4750.6825 23354.9867 8121.9833 9486.9916 3035.5766 8478.1181 11409.4151 7457.7488 7395.4255 2191.8702 4027.9888 4403.6046 9288.2764 61398348 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 28201.2714 9020.1521 9020.1521 291614160 SoxA Sulfur Sulfur Oxidation NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 10085.2186 2100.3174 63338.3128 4047.8332 3610.9957 4109.056 4109.056 4469.3916 7905.3144 3379.4521 5916.7182 5453.4961 2419.547 6175595 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 9128.6717 1846.7671 2867.7219 317395076 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6578.5007 32447867 ppx Phosphorus Polyphosphate degradation NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 14606.5189 1849.2121 2846.9072 2829.533 3304.1646 2329.7685 66809.6875 3308.2976 3389.7821 5660.8263 4932.6438 2398.6586 2879.6513 6616.2407 2906.8218 7595.7601 6661.4074 5781.1105 2794.5838 3029.5902 2086.486 7239.5896 99083393 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12243.3431 3269.7561 2731.1659 111212.9791 3865.1279 7073.7489 6090.3607 5917.6565 5765.9448 3110.5749 6869.4434 2171.2664 7973.1151 6132.9311 5489.3427 1921.3281 3438.7242 2169.068 12925.7369 354562848 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 13445.8758 2648.9518 170740961 tktA Carbon Cycling Carbon fixation Calvin cycle Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8365.2307 23279.3869 13109.1106 7064.6707 4454.3147 4454.3147 5554.0811 10101.8768 1794.5568 332518017 arsc Metal Homeostasis Arsenic Detoxification Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 16608.4864 3329.1143 239937650 endoglucanase Carbon Cycling Carbon degradation Cellulose Aeromonas sp. YS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 13649.9046 11079.5382 2841.0901 6222.4679 7443.1661 95670.1563 7230.0413 7146.0426 5583.2911 5822.9765 5822.9765 6646.9741 4680.9536 20401.5552 10258.0252 7184.7039 8818.7727 7485.9337 12119.4114 1979.5837 3807.1434 4676.9657 270284661 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 13552.4704 5494.4426 7469.5021 7469.5021 3913.1921 12554.5811 7685.9473 8272453 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus sp. P-4-N superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11287.4394 422313985 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8279.0487 16151747 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus; 9365.2414 6976.1707 4492.9716 5841.2691 4189.1351 58736.1398 7876.5956 5053.0853 5053.0853 8436.7264 2185.6345 23392977 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21164.1455 5393.3388 3925.3093 10557.3995 6622.4299 4263.8969 108767070 catb Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 17014.6162 4519.8826 333990271 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 12297.5437 385210403 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 107373.7581 8522.3347 5855.2342 3341.282 5148.6056 6933.6606 227832745 ppx Phosphorus Polyphosphate degradation NA Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 7688.4106 357203881 terc Metal Homeostasis Tellurium Detoxification Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 12596.797 9581.6878 6633.0483 3538.3303 72759.7998 4087.9758 3626.6534 5829.3307 3342.737 3342.737 2576.2994 3258.122 2679.3019 7334.1941 9998.9699 7218.5297 7126.7766 2579.928 4230.3822 3016.443 177842570 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 19605.0111 51213.4777 2089.0381 4167.7392 4686.5687 3015.4321 192897530 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 14640.8952 4844.2851 44273.4082 44273.4082 5383.0992 2759.528 7309.2842 2037.7223 5805.0495 3012.4313 296255097 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 6672.336 25188.3106 4540.1466 4580.5609 3637.2509 4284.0537 1865.068 1865.068 14496.2341 73651.4185 4762.5714 2168.1412 2813.3567 2092.4894 13440.2411 4912.7123 3398.789 3134.4144 4559.3145 351650244 axe Carbon Cycling Carbon degradation Cellulose Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 8388.5244 7637.1788 7637.1788 6574.4887 16084.6203 186475450 FBPase Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 13266.9972 2278.6404 2463.0166 3858.6601 3128.7196 53236.4702 302407830 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 20886.2288 332592212 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9483.1478 185479.8366 3617.5979 5435.0952 3560.1817 2240.6064 372269863 mer Metal Homeostasis Mercury Detoxification Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 13060.5517 3200.5312 5772.9195 166048.7777 4513.3343 4541.1112 4541.1112 4383.8116 5974.2041 2178.5339 3631.3569 3602.0495 164598104 exoglucanase Carbon Cycling Carbon degradation Cellulose Infundibulicybe gibba superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Infundibulicybe; 7858.8973 3501.8282 3843.4742 2717.5671 7171.4223 3854.0493 6243.9381 6243.9381 5458.1086 4287.7903 4881.1035 8671.9633 5063.7687 10238.8825 5888.9153 4422.8516 227326316 rgl Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 17296.8365 3094.2058 2472.5095 3992.267 77718.5653 5366.4362 8021.5121 12332.9663 5730.7066 5049.8645 4745.6998 7551.8715 40025.1877 8622.0666 5644.1337 3730.7785 3192.9931 3475.8229 2863.557 5220.9401 325106427 RgaE Carbon Cycling Carbon degradation Pectin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 10433.0775 3043.2513 2894.2665 4600.5462 3091.6063 3091.6063 4181.9467 4094.2575 6798.8487 6330.2535 2351.2502 3256.5047 6406.0766 407715608 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 7330.7776 5766.9738 3841.2431 6670.559 4629.4851 2404.9821 2404.9821 6032.8956 2314.9195 2138.9627 3189.1532 9641.0651 291571748 amyA Carbon Cycling Carbon degradation Starch Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 15975.6123 2618.0777 8614.699 3470.4043 3470.4043 386845555 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 10482.7889 6013.9416 2243.3818 2243.3818 3666.3789 238927964 amyA Carbon Cycling Carbon degradation Starch Selenomonas flueggei ATCC 43531 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas flueggei; 7886.5668 5598.72695 2405.2865 6900.714 3301.5892 4440.8706 7032.4205 2457.267 2457.267 6606.5512 5109.0468 3298.1745 2559.8993 384046254 Sir Sulfur sulfite reduction NA Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 11595.234 20358.3724 4656.2595 3417.9077 3417.9077 5991.1939 6069.0585 7894.7549 157837428 one_ring_23diox Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 8437.0287 6950.9855 4915.2423 2647.9743 65950.7785 3931.9102 20724.4009 20724.4009 7176.7136 12728.2804 5543.7712 7261.303 6216.8073 7925.6509 4155.5027 4643.8361 7154.6983 4882.8169 19831.4098 7002.2415 7139.9074 4783.823 8521.9301 6445.8893 3588.9236 4868.7645 86606354 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8278.3158 2709.6156 2709.6156 198256785 b_lactamase Virulence Antibiotic resistance Degradation Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 9236.0964 2552.4846 4291.2597 57647.498 4185.213 2585.6388 2585.6388 7228.1638 3763.2301 6981.9195 3715.0375 7324.1589 2556.069 2526.2683 2155.8383 56695898 SoxB Sulfur Sulfur Oxidation NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 8828.3638 2140.6273 4693.4393 13586.0281 8985.6497 14215.8652 3954.2774 29532.7228 2824.5199 2824.5199 9153.422 4694.2179 4462.9542 8016.1775 2768.6132 16280.6402 5550.808 7842.4801 3629.1464 6961.9777 315643991 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 8994.4339 114564353 Sir Sulfur sulfite reduction NA Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 9846.392 5359.2992 31410.6568 4014.1902 4328.8279 2543.0857 72960.0733 7539.884 4507.3316 4507.3316 4202.8144 9241.382 4919.6578 9602.3193 10037.9985 12540.212 3142.7873 2837.0498 4906.1056 13717.1266 5563.8242 5047.8871 3463.866 10925.1723 5606.4412 5974.7769 4352.9253 149811533 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 14036.1055 5309.3576 2458.1176 93454519 dsrB Sulfur sulfite reduction NA delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 247897.7178 7194.9843 7194.9843 296823658 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 7174.5146 3737.1284 145241390 arsm Metal Homeostasis Arsenic Detoxification Aspergillus niger CBS 513.88 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 11160.133 169860436 exoglucanase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 12533.6558 190685706 phenol_oxidase Carbon Cycling Carbon degradation Lignin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 8061.929 132320.8135 6719.7522 359790897 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 8559.7139 12239.9535 18081.3366 5465.8 2110.8395 2110.8395 354585050 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 25698.2402 8351.4958 3595.2753 78295.7148 4209.0157 4439.9699 11447.6969 5300.4976 5300.4976 7660.6223 6331.0886 3140.9206 10927.4921 4649.5584 5479.5921 339480446 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leuconostoc pseudomesenteroides KCTC 3652 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc pseudomesenteroides; 18209.7097 71361369 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 7888.8907 3375.4677 2747.9786 4040.0787 5889.958 2426.6714 133131.3033 4337.0528 3853.3189 2281.0915 2281.0915 2946.4818 11775.6973 5559.7104 12150.0772 5166.2923 7666.595 3010.0202 4326.5006 8165.5447 2550.8577 14328.0864 6391.2871 8775.9658 2953.1699 3541.9113 4187.1908 7891.4461 6186.7531 169848701 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 45778.293 4890.6935 7701.8259 3517.7693 10993.2936 170721001 amyA Carbon Cycling Carbon degradation Starch Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 29199.3954 5715.1018 4838.0656 5879.9235 2491.0441 2907.1192 332377256 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 8519.4006 2397.6435 3954.7566 7545.8931 3692.1763 6587.1085 5358.476 2149.3966 6709.9331 6299.8674 2167.7006 2673.5194 1823.1219 4742.1919 292675834 catechol Organic Remediation Aromatics Other aromatics Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 46251.8952 7823.5437 2819.6111 2819.6111 7808.244 149300 pula Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 8872.1479 111036254 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 24175.5231 41549.811 99083293 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7227.1846 9468.452 148499796 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 9358.0113 13629.8099 2586.9439 26948.5427 89019.0576 5322.9361 4692.9004 4692.9004 2623.5535 4020.1167 1794.4816 3804.5047 374984397 ben_bcla virulence NA NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 8053.4394 3937.6425 16686.1245 6553.5478 4136.486 9353.0095 13569.601 3449.031 329848907 chitinase Carbon Cycling Carbon degradation Chitin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 11488.3269 3001.1208 115396660 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 7174.6223 5051.3881 2745.095 3931.4252 2434.0836 114860.0034 4423.1197 2679.5654 2679.5654 8962.7685 4607.9045 2432.244 2791.5521 7329.3402 5628.3449 5168.7082 2670.0817 5976.3553 3852.5431 2198.198 46119208 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 13944.3627 3257.0883 4228.0587 4228.0587 3975.1147 2496.7338 325290633 dsra Sulfur sulfite reduction NA Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 11594.339 3089.6285 6916.2003 4289.6704 2207.6859 2958.2137 328466013 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus helveticus MTCC 5463 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus helveticus; 8848.7239 2890.1594 158441780 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 9345.844 19122.0465 7358.0522 4562.1315 167777438 amyA Carbon Cycling Carbon degradation Starch Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 46813.4319 5178.0799 2453.7386 3980.6749 10723.0697 7075.5953 1996.5492 1996.5492 9665.424 6017.4785 3537.5142 3346.5573 7413.7646 2299.9078 11844.0167 4902.3903 6132.1644 4189.7877 2904.3614 3497.2452 3274.6187 288961539 cellobiase Carbon Cycling Carbon degradation Cellulose Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 12801.1386 5688.771 268792.0819 4457.2889 1982.4995 1982.4995 11700.1651 5538.3158 5906.1112 3739.3131 2498.1635 2223.5796 4148.2509 6482.3268 2493.0876 2235.0642 114799328 pgk Carbon Cycling Carbon fixation Calvin cycle Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 12832.929 2510.1993 2780.3032 5571.9149 5421.2618 2680.3266 2680.3266 3776.7017 19082.8527 3598.433 4020.323 5545.4665 2125.3221 3716.0222 5164.8012 2643.6951 5371.6447 3017.4214 220711347 arylest Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 18220.3463 55044.9923 4816.4354 4074.5781 11205.7308 4832.7555 18806.3192 2097.9614 74317446 arsm Metal Homeostasis Arsenic Detoxification Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8587.4233 7084.9367 4009.2936 3237.678 4387.133 2717.736 93755.5664 11845.8365 7975.3814 5743.4248 5743.4248 2714.6684 10164.7122 16373.8732 2240.2561 2694.9526 6911.117 3195.173 10711.2378 4856.7152 6465.126 3291.4624 2960.7061 3822.6994 85695123 alkk Organic Remediation Others NA Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 6598.2071 71776.3836 5524.9609 1582.2357 311906446 ppx Phosphorus Polyphosphate degradation NA Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 12646.3614 40738974 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 20334.0454 10492.7191 3721.3575 2752.4902 3131.5098 3630.8436 19304.5282 2168.9758 2168.9758 3575.2046 4387.7356 4138.3041 2704.3324 5251.9037 2680.9177 8638.7104 4964.2627 1663.4243 4562.0338 3549.3951 126621515 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7647.7192 33428.7632 88807733 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 14022.8336 11201.6107 4107.4851 2377.7945 10802.29 3000.0004 155462.8189 6777.35 8893.4839 13070.7055 5376.3764 5376.3764 3807.7905 6843.9753 9410.1249 9939.7231 4449.8055 7513.8601 12123.2749 10262.5033 7229.6136 7362.3732 3550.8309 8184.2161 5986.8383 5524.8898 99030583 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 11530.3823 3659.4311 328527051 amyA Carbon Cycling Carbon degradation Starch Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 10231.0314 359418969 cellobiase Carbon Cycling Carbon degradation Cellulose Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 11993.8661 4994.1148 9325.3281 3554.1902 5017.1461 269978.5572 4157.3758 71723.6604 13757.0928 3675.5418 15705.4436 8564.904 6540.7583 8540.1686 3451.8381 6810.888 11385.0539 15229.9031 19856.3868 6917.3904 2636.7431 3792.9809 8345.191 8904.8672 229611195 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10138.6243 4574.6344 24189.5359 2089.9571 2089.9571 5066.5807 4806.5032 12543.2848 4214.6519 3576.9513 12706.1231 30529.6428 6469474 beta_agarase Carbon Cycling Carbon degradation Agar Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7075.9234 126460036 aps_apra Sulfur adenylylsulfate reductase NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 8605.7557 2432.6327 2533.352 6153.7008 4997.2503 9731.9065 365902215 badh Organic Remediation Aromatics Other aromatics Lactobacillus malefermentans KCTC 3548 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus malefermentans; 16650.8803 5929.0879 3428.9595 73811.8286 8803.676 4769.0961 4769.0961 6427.5472 4325.347 359463174 amyA Carbon Cycling Carbon degradation Starch Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 6673.0531 385205089 alkb Organic Remediation Other Hydrocarbons NA Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11441.3354 5659.2117 6594.0532 4310.497 3963.88 5860.6087 4539.6505 5592.0671 2515.4499 3376.5002 4948.2009 77920128 mer Metal Homeostasis Mercury Detoxification Pelobacter carbinolicus DSM 2380 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter carbinolicus; 9726.0182 357938479 rubisco Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8747.839 6118.1248 7834.5437 4422.5064 5231.2955 3627.0739 229469189 pula Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 40364.54625 27963.43245 994238.37055 43621.89535 70956.8639 74228.62245 93831.0716 79862.38955 39458.18215 93753.46205 193216150 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 11092.85 2463.1561 5653.7156 69254.1169 2238.8875 2894.3147 51468952 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 118614.2961 13362.6583 2967.4934 12032.2375 3544.1048 5650.2357 6337.0731 2731.2622 2731.2622 5309.7387 4923.1196 3191.7967 5953.7957 2394.6636 11468.0058 10607.5327 4498.049 4520.5508 133738556 nitro Organic Remediation Others NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 8335.2477 5435.2784 3956.911 20017.4614 7859.9016 12605.9784 2833.8895 90939.9498 3405.2783 5696.4359 2779.0004 8984.8212 4178.4745 4395.7381 4879.1472 2126.1721 6580.6588 27529.1525 10731.9463 10990.5107 6102.0949 9342.2432 21035.6172 6838.6704 4197.8075 4426.9459 193085180 dsra Sulfur sulfite reduction NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 8338.6411 3440.3225 1972.9397 91861.7243 7331.8146 3024.4588 3024.4588 6402.2909 7011.6596 5713.2793 5624.9827 3920.0209 328532327 amyA Carbon Cycling Carbon degradation Starch Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 8580.1221 254461394 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 16506.2863 112441787 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6708.4859 114553762 rubisco Carbon Cycling Carbon fixation Calvin cycle Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 8146.1278 9267.7034 261879372 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8476.6321 3507.5706 14512.9602 26903.2279 61807996 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9025.9804 10422.6158 9274.6539 4278.6855 9191.9476 5154.9975 6458.8249 3425.2035 3586.8089 255033967 amyA Carbon Cycling Carbon degradation Starch Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 8283.1187 6821.1618 3443.5052 3559.6873 3848.4007 5156.7265 146404506 ben_bcla virulence NA NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 9972.5065 2699.4274 59525.3579 3627.3801 4047.8025 2735.6094 2735.6094 5760.7824 4595.9807 4606.2556 6003.9512 12751.1336 4797.7691 6623.4901 1659.8942 4025.5233 379067422 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 7526.806 3811.6832 4702.8872 2035.4765 2035.4765 3630.4092 2996.6343 5616.6608 10504.5081 13049.413 3359.5492 114194988 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 15552.3454 11216.9062 5963.1006 4356.8101 98438.465 3955.2462 3955.2462 6209.8377 6671.4211 6341.5201 11086.4167 4578.7076 5423.7116 2726.6495 8275.8059 17617.3157 3295.3194 239815997 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 4905.3414 4012.9884 3780.6181 19322.5799 3632.2093 358050927 cysJ Sulfur Reduction NA Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5324.2996 2756.779 3157.7078 5793.9862 3368.0182 2789.2893 5224.2685 2298.6081 2811.6465 25196.7455 94496157 RgaE Carbon Cycling Carbon degradation Pectin Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 7891.8015 2457.8817 2536.5698 383819960 mer Metal Homeostasis Mercury Detoxification Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 7227.2607 1890.4231 2450.9199 9284.8194 5375.9235 62738.2423 4269.3779 7394.2079 7394.2079 2580.2483 3822.5451 7579.0098 10552.5761 5963.3437 3757.497 3723.5459 6140.4438 8917.0036 7300.8685 2610.3486 2683.2182 2740.9848 2896.1317 9925.1376 23492988 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 4206.0675 2397.0774 170775628 TIM Carbon Cycling Carbon fixation Calvin cycle Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; 12105.8177 12789.7694 3609.1426 4110.3142 7862.4172 7749.6187 3706.5599 5665.3372 2562.8573 2562.8573 7492.2961 4820.8924 4255.8473 6670.1844 2999.7855 3568.2467 7077.6624 3387.2899 12364.3707 13752.2219 5898.6445 6508.9813 3790.9542 5300.1368 3051.847 16136.5378 325123317 cysJ Sulfur Reduction NA Acinetobacter calcoaceticus PHEA-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter calcoaceticus; 5181.5298 36030.2991 4367.5906 20594.3812 8514.1535 3497.4018 344224882 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4875.9418 5212.7685 4516.7978 3449.1868 5408.7286 5572.1713 5837.1616 13552.709 2168.9721 2189.2142 399990896 dehh Organic Remediation Chlorinated solvents NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 37760.9581 2861.3062 4311.3461 354552510 TIM Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. ATCC 51472 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5665.0724 224541366 cellobiase Carbon Cycling Carbon degradation Cellulose Catenibacterium mitsuokai DSM 15897 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Catenibacterium;species:Catenibacterium mitsuokai; 56555.241 304394511 tktA Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 11926.1022 5681.4115 374576255 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 31209.7797 2350.8858 169006798 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5974.6324 6418.8159 306488173 nirs Nitrogen Denitrification NA uncultured organism 5150.702 2967.7359 2786.0697 2786.0697 322392849 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6337.4769 67017.5636 4071.6687 4071.6687 2708.3516 220681096 amyA Carbon Cycling Carbon degradation Starch Streptococcus downei superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus downei; 5425.6106 3215.6643 320008038 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 5539.0078 3579.0526 8408.4576 5253.8421 1971.9089 2147.3851 262033713 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 8080.5983 3739.2308 5723.2334 2235.8479 2235.8479 5873.0458 3366.1671 357014061 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 8223.3287 5445.9254 8006.1292 325120579 gdh Nitrogen Ammonification NA Neospora caninum Liverpool superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Neospora;species:Neospora caninum; 4963.4748 17385468 narg Nitrogen Denitrification NA Paenibacillus sp. Lgg15.3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5966.5695 1702.7629 57335576 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 61778.0126 83954352 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 9895.6166 7821.4042 10668.4891 12068.3388 2334.1593 144504.2661 3454.5563 1750.0874 18657.6486 373869339 amyA Carbon Cycling Carbon degradation Starch Gillisia limnaea DSM 15749 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gillisia;species:Gillisia limnaea; 7326.1897 2035.0043 2497.2899 114949.1425 4686.8583 2038.9408 2038.9408 2852.6646 7181.222 4276.0236 4619.8295 6598.387 3883.2725 8293.69 4712.0968 5038.8494 4472.4595 3229.9147 3852.9161 116071209 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 43953.8617 2413.5666 149209383 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 7165.9389 408751640 phn Organic Remediation Herbicides related compound NA Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 13283.6453 59412.3132 14681.4881 36955682 nbac Organic Remediation Aromatics Nitoaromatics Gemmata sp. Wa1-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata; 6466.7873 3378415 catechol_b Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5562.7996 4236.2118 2584.031 255931857 amyA Carbon Cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 14523.3792 387770898 nrfa Nitrogen Dissimilatory N reduction NA Pasteurella bettyae CCUG 2042 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella bettyae; 36642.5237 4182.6606 336383918 phenol_oxidase Carbon Cycling Carbon degradation Lignin Serpula lacrymans var. lacrymans S7.9 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Serpulaceae;genus:Serpula;species:Serpula lacrymans; 5603.1067 4133.1964 227164768 gdh Nitrogen Ammonification NA Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 10177.6026 229784711 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 5771.185 2418.4321 5685.3825 1978.155 1978.155 6521.1449 4936.7266 5936.1078 4355.2914 5452.863 2554.3041 34017182 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 13412.4892 4138.7978 12274.594 1709.2124 5185.2318 147886248 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 222943.3465 2488.6044 4923.5019 2529.8813 2529.8813 10495.7299 2446.515 5556.1105 112463645 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5842.2121 4259.259 6064.2195 8248.731 7043.7781 10228.0371 13554.615 2298.5968 5602.4517 4388.0445 3845.4157 3657.3899 3157598 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 10534.1592 2757.4145 4453.7583 4814.6104 286023.5597 4031.2457 5034.105 2305.2201 2305.2201 8941.8371 392756.665 6551.6032 3467.8869 11380.6974 4044.5151 5663.6225 3537.1145 3612.6589 3236.9382 345125622 aoxb Metal Homeostasis Arsenic Detoxification endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 14511.0958 33320481 dsrB Sulfur sulfite reduction NA sulfate-reducing bacterium oXyS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6436.1409 2237.8821 2714.713 5950.8663 6474.7467 4308.6421 5378.5354 3472.2761 11519.1671 390943548 nosz Nitrogen Denitrification NA Belliella baltica DSM 15883 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Belliella;species:Belliella baltica; 13644.9302 13915.4839 3728.6523 9845.8335 329754367 rubisco Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium LEMS superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 310475.1429 100311.3108 13951.2916 5483.2688 5576.666 6418.9767 8336.976 139227.8727 6896.7142 8726.135 2535.4965 12250.982 20489.5485 4028.3839 7334.4249 91797903 Sir Sulfur sulfite reduction NA Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 7173.6183 12831.5801 2666.78 7524.3574 4761.2938 72551.1321 4820.9034 2238.0442 2238.0442 2925.4134 8740.0987 3549.5511 5453.0644 4175.7617 2401.8732 3061.2051 3354.843 9064.5026 4688.1506 5156.0068 4103.3527 2945.0375 3100.6613 7249.0646 82919490 silicon_transporter Metal Homeostasis Silicon Transport NA 5012.9139 46579575 amie Organic Remediation Aromatics Other aromatics Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio vulgaris; 4692.5624 11037.078 11037.078 139003286 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 28769.4248 9306.5545 6153.5406 34500.01 4938.9347 151302305 aps_apra Sulfur adenylylsulfate reductase NA Desulforhopalus vacuolatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulforhopalus; 4424.2394 2948.2436 5734.6776 5398.5341 261855028 pgk Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 12126.2306 115519141 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 9156.6449 2366.621 3057.2008 5306.3374 3830.7244 6533.6205 4149.0781 283138933 sqr Sulfur Sulfide Oxidation NA uncultured bacterium 9F08 superkingdom:Bacteria; 9585.4379 2455.5888 4014.6616 61700.1456 5882.5737 6159.0729 9607.1662 8269.4624 2587.6445 194441.0473 2286.7337 6934.5887 5393.3893 333751838 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanotorris igneus Kol 5 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanotorris;species:Methanotorris igneus; 20255.2256 3190.3746 4638.9053 8102.6885 2447.2644 6328.1572 6664.4594 377578676 cueo Metal Homeostasis Copper Detoxification Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 9743.2055 4226.073 2387.4435 4884.0466 49256.8674 3453.8685 87002.615 2730.5025 7397.8637 4654.9265 5984.7835 2247.8766 2598.4832 5598.3378 2025.2457 29447.2447 5015.1916 7334.5626 2533.6516 3984.6848 3717.5529 2143.6003 105892248 alkb Organic Remediation Other Hydrocarbons NA Burkholderia cenocepacia AU 1054 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cenocepacia; 5293.6588 399231174 pcpb Organic Remediation Herbicides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 9530.489 3977.2078 8029.9334 3076.9815 8255.8113 5030.3148 7606.8993 5149.0481 3129.3758 150858350 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6474.7839 219858158 xylanase Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 12436.6191 2001.6034 2001.6034 20305.9865 5559.2663 197767945 ppx Phosphorus Polyphosphate degradation NA Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 5344.2795 3578.9409 3580.7563 2358.6113 3734.4515 5665.0514 6483.5279 3656.7567 2447.5183 2612.8424 7593.8441 3666.2888 5293.1509 1687.104 4299.891 4502.6081 302417270 axe Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 5601.8218 39102.8893 2746.1866 7164.3607 62131474 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 5033.8752 224536555 amyA Carbon Cycling Carbon degradation Starch Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 38449.8287 7214.5796 4481.9698 3216.7479 2115.9859 2115.9859 6037.7253 10229.4724 8240.5233 227819347 amyA Carbon Cycling Carbon degradation Starch Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4285.1615 302422508 nitrate_reductase Nitrogen N Assimilation NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5374.6021 2697.138 3422.789 6973.6846 6382.6394 154312529 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 8531.4825 6683.5694 238015747 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5553.936 2421.8012 5035.0304 3662.9094 5013.0378 5258.3337 8900.0691 8900.0691 23017.286 2692.9447 3711.6452 5607.7879 4840.5535 3289.0287 206581057 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 5138.702 4566.8687 3135.1221 109870.5865 5324.907 2511.8179 2021.0331 17178.9273 23784.2185 3764.7247 2578.1186 5430.6771 393401771 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans 0102 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 11519.5125 162450965 xylanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 5651.0294 5034.3235 340360577 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 4364.995 4363.8362 2619.0567 2619.0567 5177.6595 5311.8895 4704.515 4765.1055 2505.2917 3220.1758 2214.8578 298537468 amyA Carbon Cycling Carbon degradation Starch Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 8529.9944 4198.5085 260885418 inulinase Carbon Cycling Carbon degradation Inulin Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 8859.4296 16965.0439 37722.8917 6345.1265 11461.7057 7151.8214 74633.581 4318.7947 3448.5409 3448.5409 8421.1604 24012.063 4113.6846 8305.4915 9172.7729 17444.4124 1920.1841 3231.8315 5113.3694 7752.2366 344330749 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 6052.5491 3788.1496 57160029 amyA Carbon Cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 13299.7358 3044.8713 4549.011 149908784 pula Carbon Cycling Carbon degradation Starch Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 17627.1378 158422443 catb Organic Remediation Aromatics BTEX and related aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 14866.362 2226.5802 37791155 phenol_oxidase Carbon Cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 5459.3366 3871.2187 221195193 amyA Carbon Cycling Carbon degradation Starch Atopobium rimae ATCC 49626 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium rimae; 6130.3531 289529770 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Natrialba magadii ATCC 43099 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrialba;species:Natrialba magadii; 5653.1891 2885.3007 18401.3835 4102.344 8209.0959 23490.6545 8016.3026 2570.3583 31916.6946 33075.3382 16587.7097 27355050 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 17389.3773 333900225 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 31723.063 365733470 phn Organic Remediation Herbicides related compound NA Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 6304.4437 257054209 linb Organic Remediation Pesticides related compound NA Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 5576.0082 5563.675 5638.7764 4064.8827 6140.0052 2482.2193 58243.1965 5101.0764 5822.4775 7800.578 7800.578 97849.3139 4179.9358 3176.734 9296.2222 2102.1167 3530.7333 6737.8514 4080.5274 3152.0362 4086.2646 288914178 vana Carbon Cycling Carbon degradation Vanillin/Lignin Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 5476.0128 59456.3885 2192.7511 2192.7511 4053.5027 2292.9253 6940.4354 8275.1187 6312.487 3365.4623 3178.5596 120325980 quinoline Organic Remediation Aromatics Polycyclic aromatics Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 6910.3476 3449.1213 2017.5892 2694.8612 2694.8612 3934.5118 3305.6513 7489.7426 34456.1032 242349723 badh Organic Remediation Aromatics Other aromatics Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 6613.511 321143971 cda Carbon Cycling Carbon degradation Starch Streptococcus parasanguinis ATCC 903 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 5830.2957 359736982 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 6186.8589 5416.3686 4189.4396 4237.6012 4237.6012 1728.1073 339903264 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga canimorsus Cc5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga canimorsus; 7233.0254 4776.1463 6775.7883 1751015.7926 3880.4486 4917.4601 4919.2401 4919.2401 9463.9672 4381.9371 17098.9456 8167.6577 7431.2008 2867.9188 4337.0968 386904064 amyA Carbon Cycling Carbon degradation Starch Fusobacterium necrophorum subsp. funduliforme ATCC 51357 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium necrophorum; 6966.2591 22939.496 336479558 mer Metal Homeostasis Mercury Detoxification Parachlamydia acanthamoebae UV-7 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Parachlamydiaceae;genus:Parachlamydia;species:Parachlamydia acanthamoebae; 5393.7152 11141.9348 323454151 terc Metal Homeostasis Tellurium Detoxification Aureococcus anophagefferens superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 4649.5848 9288.1212 102981.2907 3570.8327 4765.5868 3642.7126 3642.7126 7833.8734 4771.0731 4273.6716 8980.9885 7668.559 2438.3487 3925.1381 8617.3152 3139.6686 6934.3827 6997.7295 3872.5546 4076.8048 6288.7482 3255.5601 5809.8889 283786682 cysJ Sulfur Reduction NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 4393.6044 2093.444 2093.444 2492.4863 407898424 poba Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. KKS102 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 167963.0031 5850.7464 4927.8833 5223.4142 7008.3808 8363.7507 14965.102 5133.8605 3085.132 54019377 merb Metal Homeostasis Mercury Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 11863.0649 3299.6282 6379.7706 2296.7057 2296.7057 8613.5792 151302325 APS_AprB Sulfur adenylylsulfate reductase NA Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 6281.315 4462.7744 3203.7978 3203.7978 1939.4102 85833997 atza Organic Remediation Herbicides related compound NA Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 7580.7836 321169207 amyA Carbon Cycling Carbon degradation Starch Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 8743.2684 2251.9118 57327.8242 3458.3697 3700.2509 4638.7221 4884.8232 2862.6464 2764.2354 2698.0388 211907942 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. T104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4603.1012 4615.7431 2128.6014 3882.1548 222879992 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 7075.9911 3817.5174 2818.8753 2818.8753 2602.1503 6024.8459 5055.3071 5973.7334 5324.9029 1719.1733 2261.3898 116671582 tfda Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 7054.7694 258618993 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 164206.4326 23262.1514 325675984 gdh Nitrogen Ammonification NA Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 15134.6538 2892.4723 6460.7555 6423.5349 5777.5371 7448.6779 1769.7476 1769.7476 2155.1679 32022.5383 84664413 phta Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 72303.8381 78019.49075 95651.6812 183578999 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5361.4008 7638.1225 4374.2585 5799.8129 2020.8162 2477.1365 366164925 phn Organic Remediation Herbicides related compound NA Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 5377.2691 2922.9222 5533.2034 4987.4154 3885.3439 3017.4223 8250.1004 3929.9731 6702.7631 4223.8203 4599.33 359789508 b_lactamase Virulence Antibiotic resistance Degradation Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 15210.6579 2268.4179 4115.2427 5518.686 2511.9155 2511.9155 3029.9398 6285.5084 1920.4876 5323.2399 218319082 bphb Organic Remediation Aromatics Polycyclic aromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 6799.2685 3371.3828 28394141 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46268.1702 383782831 cellobiase Carbon Cycling Carbon degradation Cellulose Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 4799.7245 3065.7705 57176.9757 5264.6954 5696.2987 3834.5181 3834.5181 2216.8108 10688.3847 7322.5177 5585.3361 7918.4811 3768.3368 229784759 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 19838.6436 2987.5083 38661.3352 2385.1095 2984.4975 76868.0514 4691.7028 4715.9976 4466.7707 3508.0595 3508.0595 6344.8866 6531.0002 5669.9307 3026.404 5675.6311 9800.0368 12010.3894 4805.0268 6790.2796 4459.2143 2944.6732 7385020 xylanase Carbon Cycling Carbon degradation Hemicellulose Caldibacillus cellulovorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Caldibacillus; 5175.7362 307773204 dmdA Sulfur DMSP degradation NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 15052.1269 1947.2245 3661.3796 3593.0505 2552.823 85625.1197 3543.2837 2356.4536 2356.4536 3044.4732 7570.1912 3784.3641 4389.2452 3497.4404 8485.3689 7336.1999 4590.1281 5621.3891 2534.3073 2712.2509 4392.1261 1984.3599 145847527 ara Carbon Cycling Carbon degradation Hemicellulose Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 5573.8473 4947.5386 76057607 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4926.743 7592887 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium ORII-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7264.0507 1864.5272 2270.68 4231.4584 122166.4231 3539.9075 3606.0825 11367.5278 5589.4081 5589.4081 6393.5896 3169.0292 20576.1201 5842.0976 6759.8089 2224.05 3292.3884 2113.6949 3999.4243 2598.4304 3367.965 116697525 nifh Nitrogen Nitrogen fixation NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 7965.1997 3511.9897 115375769 cellobiase Carbon Cycling Carbon degradation Cellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9673.1187 3554.7924 3868.4715 26870.8256 4065.0686 5693.9251 5693.9251 14652.3381 12467.1681 4259.9165 5945.6563 2914.2415 6656.7667 2351.7617 31825.9119 8608.5552 19233.2041 2715.9431 4079.8015 30384.134 8834.5689 310946605 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 21463.0094 271967869 vana Carbon Cycling Carbon degradation Vanillin/Lignin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4705.3572 11802.7193 2567.1143 13898439 dsra Sulfur sulfite reduction NA uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 10898.5078 7251.5371 4105523 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 167044.8546 3750.4336 2391.0386 1990.7814 4732.3184 5797.8336 16407.3505 82694.8097 6231.539 3816.8268 2304.4498 2304.4498 180908.9537 8494.2797 7641.8887 7169.0631 3597.5601 8998.2905 5762.4706 20206.1966 6749.3594 5456.4508 3387.3067 4255.4966 3151.3003 5902.3796 4732.147 226714741 ppx Phosphorus Polyphosphate degradation NA Laribacter hongkongensis HLHK9 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Laribacter;species:Laribacter hongkongensis; 22128.6768 8304.3822 3797.8733 10315.497 10370.5151 91692603 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 10148.0845 10330.764 10330.764 1594.9716 109456281 cysI Sulfur Other NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 4673.6361 374569991 cysJ Sulfur Reduction NA Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 10820.9179 1929.0072 14059.5433 5611.0607 6326.4548 3514.2434 3514.2434 6289.1575 3566.549 7860.3293 38762.7706 3594.1508 11880.3952 8647.8488 4784.8714 7683.2949 4779.6472 3675.9364 3281.7998 19291.4563 164456014 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7630.157 63081878 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 15694.2231 2975.2204 3418.4326 4253.781 227822313 xylanase Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5839.3219 3844.2552 398246118 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4662.2921 46790.5735 5440.2826 4516.5534 4977.2473 4422.4611 10964.4925 3335.1252 3426.2294 83950081 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 13103.0551 2297.0619 2297.0619 4029.3376 3234.681 4178.5925 1898.8104 332377288 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5659.3394 3510.3231 7779.1144 3127.5827 16767.1247 3453.3799 67505.6962 6387.5775 4850.6125 5774.6957 5774.6957 14499.2765 5718.6425 26995.6034 5451.708 2890.4762 5915.6221 8576.4064 244637.7936 14271.7583 7144.5205 6928.0487 2988.4569 5811.6537 3423.4677 2870.2564 7294.6549 242129595 xyla Carbon Cycling Carbon degradation Hemicellulose Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5393.2342 3876.37 11627.8105 82501048 ara Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 5516.7465 374413762 dsrB Sulfur sulfite reduction NA uncultured prokaryote 7059.3433 6616.8137 64168.3044 3312.0397 3312.0397 3440.1933 6729.6481 4446.5792 2099.484 187922089 urec Nitrogen Ammonification NA Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 49788.5148 3242.2931 3788.9144 9387.1801 63213.968 4525.5843 5001.3041 5476.6601 4630.8773 330971498 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. aceris str. M302273 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 7621.1546 375109844 amyA Carbon Cycling Carbon degradation Starch Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 6154.8105 7607.7896 114552360 glucoamylase Carbon Cycling Carbon degradation Starch Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 6782.757 2478.3116 19279.8321 6286.3742 8040.137 5633.9485 7160917 nirk Nitrogen Denitrification NA uncultured bacterium wB93 superkingdom:Bacteria; 9857.0793 184192251 alkk Organic Remediation Others NA Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 6243.7238 6482.1419 2601.5574 4282.1411 3333.0724 6305.4777 3723.9946 4219.6745 9852.3362 3742.9067 2190.3977 3687.49 337293643 amyA Carbon Cycling Carbon degradation Starch Waddlia chondrophila 2032/99 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Waddliaceae;genus:Waddlia;species:Waddlia chondrophila; 11397.3287 5253.3006 5491.4425 71156382 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 44045.9499 3562.8202 4784.9751 4840.1401 2424.6923 4150.6362 2159.8238 2968.2757 254271833 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 41597.4792 15674.5827 18229.7477 8373.1409 284017300 pme Carbon Cycling Carbon degradation Pectin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 8383.3879 2864.1227 3268.978 4698.6425 2853.189 94507.6198 3919.533 19862.0623 3708.3452 3708.3452 2656.1232 7491.6777 4346.5803 4875.3102 5522.8988 5618.4894 7574.2202 2379.2322 3829.4755 5941.8895 1732.3228 2803.9237 2925.8957 7580.0162 294349789 cysI Sulfur Other NA Bacillus megaterium QM B1551 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 10405.4626 2681.8018 8399.2142 6604.4305 118424325 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7977.305 4701.7165 16841.6916 18387.3009 545935.0634 2799.6999 12865.4465 14959.864 339328634 badh Organic Remediation Aromatics Other aromatics Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 6630.6735 3281.7228 4993.7316 5614.6033 5614.6033 5012.4457 3182.2506 2907.9959 7476.6514 2803.3845 19732.1351 5215.6063 11884.3823 22160.6542 154160765 atza Organic Remediation Herbicides related compound NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 7649.034 9009.1646 377523642 terc Metal Homeostasis Tellurium Detoxification Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 6416.6609 6390.0263 5512.5221 6321.3906 10672.7468 14087.5347 8400.8024 5221.0969 2846.0518 2846.0518 9525.2106 4125.2204 7812.8683 2319.4446 6569.952 6905.45 3487.2042 12971.4728 8416.7718 8256.2346 2992.4821 38320.5342 7345.5209 2685.964 82501221 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 4795.9041 2610.0932 312442382 ara Carbon Cycling Carbon degradation Hemicellulose Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 6069.7609 7428.9008 315498399 pme Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 5624.3386 5004.594 5824.4217 61946.3942 4452.5255 2488.1536 4638.1866 18773.0392 238871173 endoglucanase Carbon Cycling Carbon degradation Cellulose Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 7590.0491 24098.2438 4304.2213 4477.4236 8203.9655 63963.5153 5743.6703 5572.0811 2666.6246 2666.6246 2838.0782 5270.1025 2535.7296 284155447 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus amylolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7033.9779 5704.1804 3480.7561 10684.8239 4965.2417 4965.2417 6858.0188 9569.9067 18437.8028 5706.2706 5863.5131 2789.7888 3163.2182 209401662 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11851.4157 120577985 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium capsulatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 4134.7845 2140.3144 10282.4261 3383.1729 9354.1931 2529.2365 108268.1788 4085.3057 6112.9205 10573.5124 2355.0021 2355.0021 3555.8828 5076.126 3525.1235 3459.9885 13732.822 3530.4123 9192.1558 8122.3755 10581.4276 4541.3701 3306.7268 4794.487 6464.1465 374310092 mer Metal Homeostasis Mercury Detoxification Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 25595.374 268612028 endoglucanase Carbon Cycling Carbon degradation Cellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 4507.4817 184326.0194 206677194 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9644.9631 296104442 Sir Sulfur sulfite reduction NA Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 4963.1123 12697.0851 167588345 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 5269.0841 2294.2956 64098.3357 2377.8559 2377.8559 4559.8322 5170.5601 2652.4484 5937.7007 2354.9976 3916.8532 10080.4679 3110.544 3028.8491 16969.1123 338823484 ppk Phosphorus Polyphosphate synthesis NA Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5341.4604 3774.8089 4184.3816 4358.4074 5974.9341 4066.9688 4278.8976 7022.8149 5492.4758 7152.0482 4432.919 2489.3441 5563.5315 3689.3583 12281.0115 5863.4459 6256.7705 5444.7188 3529.2189 4924.2883 2894.4667 10972.4677 239626854 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 5616.7119 9807.2508 4770.3538 4578.5671 3497.6582 11993.9977 58260926 amyA Carbon Cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 4999.781 3674.1222 3412.8925 2790.0855 58701850 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas mendocina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5307.2621 2436.9935 5332.7293 4420.2519 2471.9926 6498.439 6671.0163 4515.2233 6349.3568 339412586 xylanase Carbon Cycling Carbon degradation Hemicellulose Spirochaeta thermophila DSM 6578 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 16045.6751 2327.3663 2327.3663 4254.4269 30269559 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7470.8689 9827.697 11152.0139 4221.5401 2590.8255 2328.0646 5570.5622 270512333 linb Organic Remediation Pesticides related compound NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4294.0844 15281.6451 353209749 soxY Sulfur Sulfur Oxidation NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 4731.9593 3856.9382 3726.5462 8523.4564 5148.5013 5029.445 9746.8171 3023.6577 2420.03 112463043 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6633.5028 2155.1517 2412.2214 3841.727 4092.8024 3880.3128 5358.1555 9390.2239 2320.6889 2445.9648 8689.6163 2235.4821 7468.8138 7474.8856 4678.6282 4520.0217 5965.7595 2515.8706 239812888 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 5126.799 2808.7776 3691.8988 2633.7333 2633.7333 2867.6743 33237530 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6703.503 254405624 amyA Carbon Cycling Carbon degradation Starch Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 9634.9937 4161.2227 2911.8142 3876.8279 2374.4907 2374.4907 6976.9317 21335.6208 5724.7182 2404.8746 7131.262 1971.1933 404421871 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 9855.406 3058.396 2931.9707 89900944 amyA Carbon Cycling Carbon degradation Starch Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 6191.5127 12556.7083 3884.8789 7078.663 4509.5078 2227.9491 90020547 arsc Metal Homeostasis Arsenic Detoxification Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 5879.7087 2776.3386 7925.3525 4846.0989 4846.0989 5553.6421 2041.4245 2883.1361 302677707 rgl Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4970.0833 2102.56 254410648 PRK Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 9078.6251 89215.3364 324553.6427 158329784 arsc Metal Homeostasis Arsenic Detoxification Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 7811.9284 3705.9552 2338.228 2338.228 4797.1105 5489.392 27360280 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 217700.2445 4649.0627 209916773 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. B3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 37711.8326 2366.0472 4802.2027 4802.2027 11780.1566 2569.1088 3225.143 338175177 glucoamylase Carbon Cycling Carbon degradation Starch Parachlamydia acanthamoebae UV-7 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Parachlamydiaceae;genus:Parachlamydia;species:Parachlamydia acanthamoebae; 12556.4171 5999.4317 3425.9389 4126.7545 3896.3225 4037.4657 7933.2604 4467.0921 2433.256 11346.0974 2634.3959 2972.924 5583.6122 3043.6937 6770.3106 118424310 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 97299.4128 4793.9962 4793.9962 161620703 pcag Organic Remediation Aromatics Other aromatics Brucella canis ATCC 23365 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella canis; 5822.229 7982.9519 28715.4887 28715.4887 319406265 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Bartonella sp. AR 15-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 7073.2336 1936.7772 1814.29 302677554 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7006.77 354514275 cda Carbon Cycling Carbon degradation Starch Lactobacillus curvatus CRL 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus curvatus; 7686.4722 27529606 napa Nitrogen Dissimilatory N reduction NA Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 17232.8892 29569844 TIM Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis; 7889.0994 4436.0271 12870.3846 12870.3846 3942.6499 5661.6526 4351.729 3981.3995 7967.492 5276.6405 2712.2699 325535038 pme Carbon Cycling Carbon degradation Pectin Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 9679.1789 55978094 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9146.2777 340810391 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. 4557 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 9974.4976 10421.2984 3171.7271 204973.3136 6329.6274 12065.324 56393.8259 20929.545 20929.545 17346.5805 2383.9351 6408.1574 2365.2173 5231.632 10384.8794 2181.9534 3643.1683 5300.8616 3395.3001 20502007 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 21577.2142 229468392 dehh109 Organic Remediation Chlorinated solvents NA Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 12194.8334 46307904 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4630.8924 3046.5162 7750.3227 4386.3434 4132.4695 12134.6631 11107.1832 104649.0669 11744.7882 7253.7201 5925.0842 5925.0842 3341.5235 8589.3114 4800.3338 4608.8481 6230.913 7791.2057 3138.6292 7687.1903 14663.3493 3738.0852 15712.3333 8982.8131 7419.0346 5538.7898 6166.5563 5762.1805 3721.4063 18460.9499 315453311 ppk Phosphorus Polyphosphate synthesis NA Helicobacter felis ATCC 49179 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 9357.658 2736.6896 6726.2519 1772.4888 166897671 bphc Organic Remediation Aromatics Polycyclic aromatics Dyella ginsengisoli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Dyella; 8478.2491 2691.0025 393201171 terc Metal Homeostasis Tellurium Detoxification Solibacillus silvestris StLB046 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Solibacillus;species:Solibacillus silvestris; 6652.5711 117926276 fccab Sulfur Sulfide Oxidation NA Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Magnetococcales;family:Magnetococcaceae;genus:Magnetococcus;species:Magnetococcus marinus; 5713.3294 12121.6263 17865.0814 16727.744 3359.9567 5301.4042 5301.4042 6329.0199 4281.6282 4036.7659 3726.4277 2881.5287 3764.7284 9012.0774 2527.9565 10872.1783 6207.4719 6188.7534 6757.9261 2569.7289 5035.4898 4002.5261 268608211 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 6622.2234 209873845 PRI Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 7661.3516 2450.4782 7569.1668 2592.7284 6964.1186 2743.5406 3341.5542 4046.3076 3844.7773 3597.7649 4964.8416 3611.1467 13670.2098 2126.1315 6106.8083 3795.3046 535286 catechol Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5610.6712 3991.6902 3860.9123 5089.3246 4542.1842 403658377 nahb Organic Remediation Aromatics Polycyclic aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 5876.8081 238707335 cysJ Sulfur Reduction NA Yersinia ruckeri ATCC 29473 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia ruckeri; 26470.917 3664.4261 4448.8254 59754.6858 6477.1576 5333.9926 88696575 endochitinase Carbon Cycling Carbon degradation Chitin Bionectria ochroleuca superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Bionectriaceae;genus:Clonostachys; 6786.6505 3223.696 4136.2741 57467.2369 4984.7426 36784.0872 2232.39 2232.39 5827.0119 5407.8632 11085.4984 3092.1171 3303.669 6996.0604 2900.7371 7198.1548 6573.9416 5331.7369 4275.1537 5909.7635 375316297 terc Metal Homeostasis Tellurium Detoxification Helicobacter bizzozeronii CCUG 35545 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 18937.4411 291616602 arylest Organic Remediation Aromatics Other aromatics Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 6887.6388 99082995 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5051.5278 3714.0862 3345.8944 2491.4123 3830.3307 3211.1373 100885.198 6094.7261 4967.9169 5211.2246 7757.0475 5661.4352 6933.2838 8751.0625 10375.2358 3312.2791 3444.1634 6816.1023 2868.3297 15455.9872 5290.9165 8656.3833 3104.375 5098.9949 4375.4571 2729.9154 11726.6519 33391347 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8014.363 157679463 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 114720.0913 2726.973 11138.2103 4604.4769 4397.3586 12405.4756 69490.0947 5391.5429 9254.1101 7607.7917 9140.1628 9140.1628 3422.6725 9154.5618 6136.8935 8468.0697 14244.6434 50639.5233 4613.2618 4831.7223 17725.8783 2657.3397 13865.1373 4587.2758 13607.7597 5589.2719 3306.4143 62512296 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4429.1454 3993.5085 88184006 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 4679.0019 2867.1452 3389.5713 489668.1132 3736.5 3745.9934 2111.8658 4670.7088 3200.3151 398799858 trza Organic Remediation Herbicides related compound NA Pantoea sp. GM01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 11442.7276 12267.3561 2299.7391 134077948 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 7067.6115 2433.6183 3833.8967 94055.7653 2275.1251 254043608 urec Nitrogen Ammonification NA Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 9489.4873 4064.0245 3911.8721 6053.0747 6379.2467 83071.6795 6117.8782 2230.2963 2230.2963 3156.5811 5050.7647 5405.9369 4334.5587 9434.4407 7419.9802 2510.7674 2355.8239 2872.28 8082.7517 5009.1316 4433.3713 4211.5714 2224.375 51760.082 379771771 one_ring_23diox Organic Remediation Aromatics Other aromatics Alcanivorax sp. HA03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 4412.4085 224540497 pula Carbon Cycling Carbon degradation Starch Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 12430.9165 90023084 arylest Organic Remediation Aromatics Other aromatics Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 9835.9829 5683.1888 33391385 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8817.9763 3002.4778 64362.7636 64362.7636 4863.906 238759891 cueo Metal Homeostasis Copper Detoxification Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 4949.6007 4714.7072 163812229 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6928.7359 4041.4987 354583281 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 8658.3144 6133.3913 69426.909 3698.9962 11599.4696 4122.2835 4122.2835 8709.2998 4744.3749 11647.2263 4914.094 6504.1872 12143.7476 6391.6551 6128.9602 2781.2792 4774.6082 8004.5807 377559621 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 9088.1275 7714.5973 2098.3917 2978.1406 68547924 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 16797.2421 7023.9657 357407044 arylest Organic Remediation Aromatics Other aromatics Methylomicrobium alcaliphilum 20Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium alcaliphilum; 5233.7663 2113.4037 31083.5266 1857.3599 1857.3599 6081.0879 4166.135 4407.6018 2436.4247 8425.1345 4793.2638 2627.1686 3102.1516 4397.7468 342800620 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 5345.714 5931.2688 19092.8686 12768.4582 2924.6882 115394382 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 17997.1828 3427.0617 4023.7729 4122.7303 68384.9995 13656.4788 4040.0841 4344.5783 2414.6992 2414.6992 3867.2273 7860.7155 7658.6328 35832.2901 6842.5617 6287.7509 2870.4286 4918.5323 126704211 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9267.5958 158445254 pula Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 30852.6617 57316.1822 242215078 mannanase Carbon Cycling Carbon degradation Hemicellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 7755.5303 4102.0879 3698.8155 14053.7003 8363.2642 4936.7487 7342.0316 340777753 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 14596.7057 70506.793 5828.6243 209906957 arylest Organic Remediation Aromatics Other aromatics Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5346.2349 42412.7883 8718.6349 4052.0492 10391.9199 7822.3653 2413.0554 2413.0554 10302.1152 6384.2956 47351.0334 2250.2519 5712.0135 13954.0825 4772.1558 269121947 b_lactamase Virulence Antibiotic resistance Degradation Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 4760.327 307354372 nifh Nitrogen Nitrogen fixation NA Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 7824.3044 2598.8214 2398.466 2639.1604 103818.3212 4100.7178 8425.086 3288.8484 3288.8484 4602.7516 3351.7965 4924.4847 2264.5751 3403.4429 4928.4247 3217.8526 10089.0458 17767.2929 11600.3314 5010.0277 4299.803 2036.9577 254229160 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6767.5679 35318.5563 3243.4281 2422.7686 72560.7476 9762.3892 4246.064 10897.1191 15034.9205 15034.9205 2910.1615 10705.4555 11974.8151 10084.6106 48887.5949 3482.1598 6791.0688 339480768 amyA Carbon Cycling Carbon degradation Starch Leuconostoc pseudomesenteroides KCTC 3652 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc pseudomesenteroides; 94639.3602 322413516 nifh Nitrogen Nitrogen fixation NA Phascolarctobacterium succinatutens YIT 12067 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Phascolarctobacterium;species:Phascolarctobacterium succinatutens; 16367.5242 400329711 cmci Organic Remediation Aromatics Other aromatics Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 5230.4879 6998.3787 7040.9152 7040.9152 5382.1877 5723.1959 4265.9046 2227.0944 2227.6653 4938.381 2232.4549 2784.2541 2143.976 4937.0247 331083657 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4979.1601 2877.9494 6499.4378 61590.5794 3266.0127 2740.5178 5872.8712 4661.0462 4078.6075 5486.088 5371.8649 2757.0955 5677.8404 1701.1901 2500.0308 6250.3057 380511551 pcpb Organic Remediation Herbicides related compound NA Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 6148.7529 3699.2032 6048.4773 4587.8465 311280394 alginase Carbon Cycling Carbon degradation Alginate Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 8792.8343 5866.711 3636.1388 8421.9586 1914.4894 1914.4894 6693.2723 37690.9307 6857.5015 13779.5296 5170.4983 330465939 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 14789.2409 2127.6716 65657.9048 58697.2061 2169.7784 2169.7784 13271.6125 5101.9921 2099.6223 7539.6369 4668.5911 4927.4062 1837.1689 3289.0172 2523.9769 332638698 amyA Carbon Cycling Carbon degradation Starch Weissella cibaria KACC 11862 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella cibaria; 4994.188 10253.2877 296920726 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 6532.6752 359405419 amyA Carbon Cycling Carbon degradation Starch Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 7745.6246 90954653 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 322363.185 3210.92 9382.4658 2985.5073 6127.8464 11856.1662 5292.55 3353.5318 5510.6998 262194994 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 5237.7018 4570.4546 2530.8184 66540.3809 3700.3841 5719.2593 5330.7183 2894.7534 2894.7534 5018.227 5008.3505 2215.3176 2919.8336 239814984 amyA Carbon Cycling Carbon degradation Starch Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 6149.4967 4970.6549 2858.1284 2796.4196 91165.726 5260.796 6299.3524 9882.3117 8975.2094 8975.2094 7000.8787 9003.8573 5294.5181 5909.4863 10838.1674 2165.5062 13766.0851 9324.2414 12315.7944 4303.8194 4400.1747 5670.6356 3077.0316 364566871 chitinase Carbon Cycling Carbon degradation Chitin Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 33407.6343 4352.4635 296116110 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 5608.6575 4179.0835 2981.0773 122943.4381 7869.7907 3757.6437 3757.6437 3060.8611 7501.3985 2133.7401 5041.9515 7971.6484 4179.4458 4038.6182 4375.0841 154276230 endochitinase Carbon Cycling Carbon degradation Chitin Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 5621.848 4493.2671 9171.954 3693.2225 4314.9725 9272.6956 3451.5934 3451.5934 5562.8637 7036.9537 70170.6409 4243.3633 4168.2929 2421.343 3149.5349 6793.5394 2653.7101 15626.0768 2037.4172 3528.3403 6673.4259 229765830 ara Carbon Cycling Carbon degradation Hemicellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 4509.575 2079.0465 378730515 tfdb Organic Remediation Aromatics Chlorinated aromatics Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 19553.9563 69393.0164 9805.7231 4792.065 10605.3605 5554.9356 52214526 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides fragilis YCH46 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 8999.8425 2912.1471 85707134 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6109.3653 2218.0378 2021.9032 2021.9032 84786539 amyA Carbon Cycling Carbon degradation Starch Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 405745.9089 3652.6134 7683.3873 2228.7749 2228.7749 11399.5597 6253.2633 3745.9526 6057.8149 2396.0207 3669.85 308186139 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 8272.1777 2818.6576 2118.7061 19982.8423 4243.8874 3666.0959 6136.3895 4417.227 5922.6167 6899.9677 19108.0627 3796.7252 6398.0039 2291.8238 2954.8611 2624.0226 5606.2974 283442194 ppk Phosphorus Polyphosphate synthesis NA Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 33761.5855 2588.936 5972.1079 302511735 mannanase Carbon Cycling Carbon degradation Hemicellulose Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 4638.2583 2566.4556 6959.8592 6959.8592 2649.9759 282896583 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 4707.4706 11513.9601 6251.674 320549661 amyA Carbon Cycling Carbon degradation Starch Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 15285.0397 296049427 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 17032.9938 357204276 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4945.1523 3778.1715 3377.776 5228.8108 5691.398 1628.7272 3298.9606 4830.6363 260598877 ppx Phosphorus Polyphosphate degradation NA Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 15256.4305 396094894 terc Metal Homeostasis Tellurium Detoxification Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 6014.3581 6130.0524 6875.8735 104782500 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 14690.8659 2359.463 4560.4178 9677.3205 4234.3713 3983.7038 8174.81 2958.3175 2958.3175 4015.0091 4237.5755 4612.6654 3979.2507 3129.6103 5471.7016 384155034 nrfa Nitrogen Dissimilatory N reduction NA Arcobacter butzleri ED-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 19726.5095 307945200 pcag Organic Remediation Aromatics Other aromatics Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 10381.7852 3130.6911 65270.954 4804.101 7798.5764 2625.1894 2673.9016 9009.34 3495.1115 4622.5774 18143418 chitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas piscicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5248.8085 124023021 endochitinase Carbon Cycling Carbon degradation Chitin Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6070.0521 158138907 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5650.6793 2284.2408 6051.0364 5901.1961 3636.5427 5503.191 33502.2804 64969.5816 4614.8464 9439.8814 7519.3964 2356.4999 2356.4999 3458.9299 17110.5327 7295.8825 6159.9028 9616.5476 4100.1993 5881.3857 8324.1756 8069.2069 12761.9166 14912.5487 11031.4906 3420.1577 7715.0976 8041.5683 4604.7307 159881821 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 7521.6472 44857.1345 6385.2282 83404768 nirs Nitrogen Denitrification NA uncultured organism 8133.0517 4514.9131 1982.1816 5569.5995 3571.4652 3571.4652 5942.2049 4550.9524 12542.1189 8237.2019 5934.5707 224495601 aps_apra Sulfur adenylylsulfate reductase NA uncultured delta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 4975.9405 10447.8594 4085.0328 2593.1541 62635.1823 4954.5164 4643.0803 7052.512 22178.411 2446.6499 10365.9422 3299.7016 5722.6401 1652.3058 4415.38 389664520 amyA Carbon Cycling Carbon degradation Starch Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 13041.2431 3940.2316 3270.6729 4926.5201 3202.2422 6504.1633 8441.3336 2930.569 262407084 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 2_1_22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5140.0353 5018.6853 259476408 amyA Carbon Cycling Carbon degradation Starch Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4710.1392 41536.8304 4642.5534 1965.5555 151281850 terc Metal Homeostasis Tellurium Detoxification Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 11773.9685 1917.4585 2454.6859 97280.4042 4617.3015 4768.6928 3753.5027 1985.4216 2749.0527 112462441 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4394.7646 302846479 gdh Nitrogen Ammonification NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 4186.7716 306984908 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 8598.852 19693.3932 7310.3181 3471.8253 3945.6937 2179.966 5912.6376 3386.8788 2484.5758 4753.0198 4856.8412 3753.7569 4296.7808 315161570 mer Metal Homeostasis Mercury Detoxification Enterococcus faecalis TX0645 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 5310.6212 3739.54 13613.4654 18059.499 3835.6228 5643.4779 9090.092 23937.3139 4697.3874 1633.5399 2543.9376 2586.5934 2249.5103 334090340 dsrB Sulfur sulfite reduction NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 7313.8469 15603809 arsc Metal Homeostasis Arsenic Detoxification Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 17728.8378 3581.9527 11099.3149 7922.6257 3589.7203 3589.7203 8140.884 4749.9656 3564.1049 2746.4705 90206044 tfth Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 4762.1878 4992.9181 4101.0451 5483.7155 3927.2651 9792.2335 5043.9472 244538947 cysI Sulfur Other NA Candidatus Ishikawaella capsulata Mpkobe superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Ishikawaella;species:Candidatus Ishikawaella capsulata; 698151.0014 145249732 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9048.6166 5373.7821 2769.2757 335436374 ara Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 15006.7449 1946.6124 12704.2515 3451.5972 3935.7741 3935.7741 7163.1355 5725.1985 8744.6399 4474.6185 7998.4911 4556.118 18953.688 6651.4245 5725.8088 2478.7255 3929.6746 4013.6874 71848859 tktA Carbon Cycling Carbon fixation Calvin cycle Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 9888.9666 2873.7249 3390.2197 2195.4715 2190.1496 10108.7937 4912.9702 260606365 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 10190.567 126722232 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6505.6775 3111.5514 2638.3124 26800.8901 5902.7174 2141.4791 2199.8422 3985.3918 86133105 amyA Carbon Cycling Carbon degradation Starch Tenacibaculum sp. MED152 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter; 6893.5366 298576682 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 5723.0028 171990178 tehb Metal Homeostasis Tellurium Detoxification Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 6289.5172 8331.7875 2845.3187 3283.7161 58020.6338 3563.9153 3846.7171 3821.1839 5502.8291 4285.1882 4650.5742 2439.8497 30339.7233 3514.0603 6154.6288 2786.29 3248.9166 2709.5979 349859048 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium CSLD10 superkingdom:Bacteria; 534109.1503 3512.4038 320551984 amyA Carbon Cycling Carbon degradation Starch Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 6929.0894 2964.8281 4352.269 6673.6481 39489.3236 157918908 bphF1 Organic Remediation Aromatics Polycyclic aromatics Salinispora arenicola CNS-205 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora arenicola; 4522.7055 3793.7114 3699.4556 3256.3311 4033.8157 5793.8961 5295.3113 6703.7081 7618.4031 3436.0644 2477.3253 8310.2427 2984.7643 2977.4229 325071041 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 5846.8837 6734.228 5424.6038 254271871 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 5018.4265 6124.4417 21271.0806 7547.4824 27054.8012 182668862 amyA Carbon Cycling Carbon degradation Starch Clostridium botulinum NCTC 2916 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 6515.5722 3454.8868 3523.5355 4007.147 3715.777 6067.1498 4293.6778 5179.8408 3961.2944 2486.2318 6889.4844 7998.6181 4631.5476 2121.437 3423.7903 3181.2222 4943.8464 84778291 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10600.311 5968.153 2518.7499 3404.8938 3404.8938 2579.1114 384259152 ppx Phosphorus Polyphosphate degradation NA Rahnella aquatilis HX2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 4888.4253 2888.0871 3382.7943 49656.0396 3527.8035 5619.921 4539.2185 5006.1974 2181.4039 1880.915 226518269 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 26139.5161 2914.9054 11027.4195 6118.991 5038.44 10344.4479 4184.7724 3564.0691 3261.0558 23653.081 3676.2081 5593.1231 2971.8744 3963.9347 86138813 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5891.6579 6066.5183 4680.841 73675.5912 6753.1146 4036.3074 8397.3468 4909.5844 4353.2744 4924.2851 4040.5738 2747.0668 7300.4885 7008.5142 2743.299 3882.3278 99083269 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5054.4588 2356.2284 6103.5529 2737.2574 2737.2574 6473.5312 377525185 poba Organic Remediation Aromatics Aromatic carboxylic acid Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 37072.4678 5832.0708 7557.6316 2936.3051 3616.4211 2453.9765 154073.1776 8151.9144 8659.1173 8659.1173 5509.7595 12400.2232 7126.7324 4251.6155 39296.7872 11553.481 3211.7936 3996.3213 3498.9375 14546.0244 22345.3748 4369.0004 5622.8258 2543.9454 353188058 pcpb Organic Remediation Herbicides related compound NA Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 8050.1632 4846.3059 4239.2505 9895.5339 2397.3771 2397.3771 4034.5271 6691.9798 3866.2952 2058.0555 2662.5228 2779.7539 320590595 rgl Carbon Cycling Carbon degradation Pectin Grosmannia clavigera kw1407 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 4815.185 2755.9584 4674.1447 7080.7265 4514.6659 3764.128 222526.2615 3612.6236 7835.3164 1999.6914 1999.6914 235875.6819 13032.8433 8333.3095 4921.2342 4239.9917 12568.5608 3041.7047 12619.4355 8423.3269 3979.9607 4777.3432 3076.6727 2232.6571 346324342 glx Carbon Cycling Carbon degradation Lignin Cordyceps militaris CM01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps militaris; 4792.9632 145234917 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 76228.7297 114798942 amyA Carbon Cycling Carbon degradation Starch Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 8175.1406 14020.8254 6019.3204 3179.5966 4409.922 2396.106 287393.9224 2550.0964 99030461 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4511.608 11446.6752 45543 rubisco Carbon Cycling Carbon fixation Calvin cycle Prochlorothrix hollandica superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorotrichaceae;genus:Prochlorothrix; 9345.0667 4857.9161 151279910 FBPase Carbon Cycling Carbon fixation Calvin cycle Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 9388.2875 19565.2058 5604.1127 2558.5652 6612.3476 324980532 gdh Nitrogen Ammonification NA Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 5283.1519 89512584 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6940.187 3000.1975 2558.6293 1776.6961 228927.004 161505242 phn Organic Remediation Herbicides related compound NA Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 13193.1695 2913.3164 4541.7271 5309.1312 4544.7137 2126.3942 456032.7674 14790.9564 7599.0629 8218.1483 2635.9798 2635.9798 8061.4809 10758.8911 13200.6225 3773.7389 7001.3166 6118.0128 2173.443 9079.4733 19726.7585 3523.2348 20686.1566 10927.6991 11429.9947 4061.7687 6473.4413 7573.77 2369.3696 307565334 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella amnii CRIS 21A-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella amnii; 5244.6053 6783.4338 9184.7783 3847.5279 3847.5279 4521.8639 2286.6089 12305.9297 18640.7114 7366.9115 300448276 mer Metal Homeostasis Mercury Detoxification delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 5452.2175 255072183 actin_Viridiplantae Other Phylogenetic NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 38113.34 13632.2851 5859.6777 5892.5947 6430.5027 4433.3528 2084.7446 3899.4753 7087.8915 9798.0165 4951.9815 7778.4763 3020.3786 4164.5519 345040947 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bilophila sp. 4_1_30 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Bilophila; 11167.4179 22796218 nirs Nitrogen Denitrification NA uncultured bacterium pA5 superkingdom:Bacteria; 5888.2768 408779960 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 6150.4926 2220.6884 4303.4463 4687.0732 6788.3788 6788.3788 7597.3108 11711.8558 3515.3263 311339143 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 5335.4762 359770654 cysJ Sulfur Reduction NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 9797.0605 1837.8127 1837.8127 30146.1894 13258.8597 111018855 pcpe Organic Remediation Herbicides related compound NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 9582.8463 2525.4739 4147.2764 5821.7552 4418.0804 376372800 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9279.8981 336265064 Sir Sulfur sulfite reduction NA Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 1014545.8512 2684.7423 5469.8396 5270.9061 12006977 xylanase Carbon Cycling Carbon degradation Hemicellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 12808.8703 19733.5517 2632.6396 9793.1845 5078.0199 343773865 pgk Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 9631.6766 4263.705 18620.4391 383082361 mer Metal Homeostasis Mercury Detoxification Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 7307.7827 313836694 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL037PA2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 4532.6316 12721.3767 66870416 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5947.0695 241205289 limeh Carbon Cycling Carbon degradation Terpenes Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9415.8285 1786.015 2453.2646 148254827 linb Organic Remediation Pesticides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8969.6188 2927.0442 62652.8233 2245.8587 2245.8587 1664.6302 225194089 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12820.1966 4967.4782 4967.4782 8278.5016 380685066 PRK Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 5163.4745 1967.8182 373549236 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 11405.4131 4977.8744 122439.0247 6774.1645 6197.2132 6481.4182 4152.7802 4152.7802 4922.1211 10619.0016 6952.6343 3682.4251 6439.8179 2392.2295 12684.5052 13688.0422 4165.9962 10467.6031 7585.5918 10487.6212 2742.4195 4202.1746 10916.7792 2211.4392 195932911 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 4688.7903 375078665 pme Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 16063.4282 125716454 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ensifer adhaerens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 6891.9312 66785.9318 389684234 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 6090.5217 2435.8773 5223.6162 14493.617 3755.7735 373234437 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 61598.3986 3377.7687 2799.2082 6193.7793 2373.1474 2045.7486 2045.7486 3534.1476 46307944 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6526.2867 43293.3691 14225.6156 4098.7499 17627.3527 3602.2108 59319.1782 4266.2346 23147.9997 6865.9844 4779.152 3623.0641 8775.5054 8416.7588 12593.235 5349.9467 4980.7781 5026.6294 3377.275 5280.627 329309848 arsc Metal Homeostasis Arsenic Detoxification Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 52963.9285 2958.148 3226.5551 96938.5484 3875.9626 2614.0597 2614.0597 3241.3863 13979.7067 6930.2956 6612.5472 14519.7218 2578.1497 2421.8725 6169.0889 3142.9712 5611.4544 6684.1638 2574.7277 4846.2152 3642.2502 4155.0879 4988.897 158187219 xlnd Organic Remediation Aromatics Other aromatics Burkholderia sp. NCIMB 10467 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19695.0589 5897.1562 16070.7401 9824.5943 2806.7349 3989.8906 3788.1632 6832.2706 3758.9273 323493390 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 6461.3602 179008.0777 311818592 nitrate_reductase Nitrogen N Assimilation NA Volvox carteri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox; 5105.5149 22819.6069 2664.9838 3638.5325 2358.3212 2358.3212 4250.6457 3016.0398 188681.673 3561.6237 2995.8397 85687852 amyA Carbon Cycling Carbon degradation Starch Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 9525.0434 11983.5511 4084.6952 332826442 xylanase Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 21010.1017 3676.7721 4293.494 3509.3045 4767.5042 5384.1112 90122.249 5814.3636 4360.122 4369.0042 4369.0042 2898.0866 7605.919 7100.0147 5504.2865 6534.7294 3809.4416 4049.9874 6420.9601 2950.4105 7470.738 13249.0981 4900.0144 8853.2537 3907.2009 4530.0644 2845.1983 6611.8094 94692242 EF1a_Stramenopiles Other Phylogenetic NA Labyrinthula terrestris superkingdom:Eukaryota;order:Labyrinthulomycetes;family:Labyrinthula;genus:Labyrinthula; 5547.1861 372450953 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9388.3871 374613247 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 9050.2287 252830.4584 21224618 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 9742.645 2450.0031 2518.2081 8472.432 6304.6036 9782.1851 4983.5585 115653.5576 7418.2652 8204.1793 8766.6237 16341.8938 16341.8938 18121.6385 8181.5348 7488.0967 4567.8737 17215.6158 5369.677 8886.023 4673.5001 8606.5137 9190.7981 8822.3843 8261.9526 4252.0709 5791.1375 114705857 urec Nitrogen Ammonification NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 8946.1629 9707.9153 3448.954 4410.1735 6455.1324 7952.6845 5167.8393 3368.6765 5322.4518 307549602 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 7681.44 4376.4559 2583.375 154297.4583 7436.5253 20121.4798 9913.5504 9913.5504 5503.9483 7161.4071 161327704 arsc Metal Homeostasis Arsenic Detoxification Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 6210.3508 2558.8655 307590719 glucoamylase Carbon Cycling Carbon degradation Starch Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 8350.1254 373486351 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 6745.8693 4386.3976 1951.5933 60475992 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 9799.4655 4855.9993 330502496 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 5777.0083 2663.7571 6328.3062 8651.5786 3227.7014 66317.0925 6251.7773 6664.3215 3451.5272 3451.5272 6319.7246 76867.6472 4068.3811 11424.0589 4286.1833 8524.4654 1791.43 6677.5051 4197.6395 284927634 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 10734.1095 3843.5837 13510.3199 13510.3199 5343.0437 4453.296 170091798 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 4481.5186 157804777 APS_AprB Sulfur adenylylsulfate reductase NA Thiobacillus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 5122.8704 2097.2661 2088.8316 87369.438 6356.7642 4925.6002 2121.6678 2121.6678 3037.3081 26093.2922 4783.4236 5050.3424 8305.8626 2965.2523 2797.6747 5978.5304 8384.0118 5632.376 7170.1644 1803.3571 4802.2643 4001.2168 289174401 ppk Phosphorus Polyphosphate synthesis NA Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 553020.1153 5730.4759 212224602 cda Carbon Cycling Carbon degradation Starch Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 147643.5918 2418.5422 3984.7064 3864.6271 7633.7424 7633.7424 4638.7589 4743.9703 2178.5238 2291.5731 4904.1171 2142.4532 6764.522 3542.8161 4992.937 2472.832 4177.5424 44733 nifh Nitrogen Nitrogen fixation NA Methanococcus voltae superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus; 5218.3442 17287.9025 2827.8664 259418465 cellobiase Carbon Cycling Carbon degradation Cellulose Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5777.7767 296536034 ben_bcla virulence NA NA Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 8091.0655 3565.7092 3504.1574 3330.2767 3439.5363 138681.4617 4597.3356 4742.1452 7124.255 7124.255 7852.5837 5495.2956 5815.3123 5523.0837 3263.9009 2648.483 3844.1365 5754.3154 2212.7212 4106.3222 3241.9837 344315439 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 18384.9897 7535.3334 3068.8752 145253599 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 10269.6711 4126.4304 2359.8236 3771.0421 7702.6543 2379.8336 1813.0208 2568.0003 307742774 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5699.1479 18502.1816 2019.7268 2019.7268 6652.9992 24524.9964 1656.8181 2621.2579 254443934 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 4850.4343 1744.7266 3283.8751 5345.0414 242787586 badh Organic Remediation Aromatics Other aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 5987.1689 2744.0402 73544802 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured soil bacterium superkingdom:Bacteria; 6562.9345 4450.1297 4467.164 16002.9874 2851.6692 4104.5044 4043.0063 4247.0303 4247.0303 22427.9288 5293.9549 4192.7567 6424.9829 8436.0811 7244.8298 8530.8656 4910.5518 4078.6712 4592.9153 4034.6406 2219.1694 149201793 nosz Nitrogen Denitrification NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 6628.411 3598.3967 58361.6513 3566.2264 3566.2264 6333.6708 3349.8863 5160.6154 2192.8504 4666.794 4542.3427 321166600 cysI Sulfur Other NA Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 5573.6661 5097.387 3720.6785 5824.0418 179255.0505 5264.5744 3106.9857 5244.2769 5292.7795 2090.8925 9357.906 4610.3093 5655.07 17954.7347 12576.3745 3487.9521 3271.5186 310622501 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium cf. prausnitzii KLE1255 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 14856.9394 3424.5488 3876.3838 7310.0359 2522.6281 6964.9615 3226.6654 151549192 gdh Nitrogen Ammonification NA Brachyspira pilosicoli superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira; 5788.4418 3609.8442 3132.4308 3132.4308 220911638 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 9927.2247 4368.1284 73200.7317 59886.1351 3767.132 4425.1459 5973.9473 4090.1462 4090.1462 3019.927 5699.9568 5055.8368 59753.5275 9379.0772 3238.6375 14438.5954 4377.0673 6892.4376 7698.495 8538.908 4888.0942 2562.5327 6785.5301 157850592 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4405.9009 68439.9975 5733.7496 5111.0438 4420.7648 9128.6198 2666.4318 5178.3576 5520.5304 83647213 urec Nitrogen Ammonification NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 6932.7583 114738505 alkk Organic Remediation Others NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 20428.6765 4485.1777 8553.7341 10040.8751 4158.0623 2716.0188 3177.9966 5340.0426 5110.5351 12475.8379 145282906 dsra Sulfur sulfite reduction NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 6828.3257 223477673 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 10836.5136 2434.9212 4554.2161 7743.5028 3953.615 6816.042 10681.1163 7854.6802 3133.3437 13237.3283 6452.5861 8975.0755 9952.4232 291071102 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 8286.9739 4166.3782 124271121 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 20482.1902 37702651 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 4631.8846 217979565 nhh Organic Remediation Aromatics Nitoaromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 6431.7488 1934.6414 77062.1987 3214.7689 3064.0122 3064.0122 4096.0919 6106.6494 209886855 mer Metal Homeostasis Mercury Detoxification Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 6352.0962 355671186 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 9759.2981 3714.5071 10590.8918 22115.1171 16314.1731 152024.1678 4684.0589 4695.093 112719.4783 4775.894 4775.894 4142.4386 4770.1691 9855.0066 39896.6315 11354.862 2442.483 19227.1179 74192.539 18900.3928 21247.5685 10014.9363 3722.9429 154350674 nasa Nitrogen Assimilatory N reduction NA Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 17938.0288 5414.2792 2833.7925 353210131 mer Metal Homeostasis Mercury Detoxification Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 9597.6863 159185938 nasa Nitrogen Assimilatory N reduction NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 4797.307 380695830 ppx Phosphorus Polyphosphate degradation NA Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 5363.6784 36848.4853 4667.7503 257728031 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Erwinia chrysanthemi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya; 9859.8962 2805.4654 2353.0386 4888.6891 4103.1342 99585.5381 19908.5821 4086.2505 7719.3411 7719.3411 9875.0665 4213.311 5302.8805 2914.1722 16502.1158 2213.0605 19433.9595 5977.2752 6743.3738 2668.972 4807.3379 5381.4175 359837778 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 65014.0649 2976.3093 365268443 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7166.884 4827.357 8827.7138 14497.659 2322.7573 354803426 urec Nitrogen Ammonification NA Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium sp. (Mastotermes darwiniensis); 5380.4026 383463913 atzd Organic Remediation Herbicides related compound NA Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 39568.9637 5744.0579 3659.0739 3778.7094 4791.2478 14128.4239 269125981 amyA Carbon Cycling Carbon degradation Starch Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 5785.2651 1444687.3166 179342840 nitrilase Organic Remediation Aromatics Other aromatics Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 15572.377 122725.5975 4335.6966 8290.3198 6307.4151 6198.0385 6198.0385 2718.6722 4405.3062 6332.3877 8038.1404 6815.046 3232.3717 350597707 ppx Phosphorus Polyphosphate degradation NA Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6330.4177 12933.8116 126737341 dmdA Sulfur DMSP degradation NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5981.1943 3888.8991 226237912 merb Metal Homeostasis Mercury Detoxification Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 11497.0976 8816.9193 2333.0778 2333.0778 36785551 hcab Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 4655.9488 2628.4451 38678117 bphb Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 11717.7289 21905.6406 3774.9667 4744.7143 104096.4672 4609.6954 19020.4226 5740.675 2373.7882 2373.7882 20513.7479 8430.5537 4497.2259 114084.8552 2567.1531 2924.9451 5429.1943 2053.9434 2960.737 6752.19 1818.9871 3893.9613 5346.9819 6288.4896 167378396 actin_amoebozoa Other Phylogenetic NA Entamoeba dispar SAW760 superkingdom:Eukaryota;genus:Entamoeba;species:Entamoeba dispar; 22481.6238 3415.9021 5851796 catechol_b Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 10108.7174 8200.2165 4987.5676 397723669 poba Organic Remediation Aromatics Aromatic carboxylic acid Sphingobium sp. AP49 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7093.535 9806.1418 2531.0127 3587.1593 7299.7623 17325.6707 5248.4204 4591.1356 60231.087 13961.6812 13680.8658 3906.6715 4295.2139 5297.4659 247547205 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5798.5078 13081.7302 19000.0909 6219.1366 80178.6251 4862.4534 7625.7483 4811.157 2309.2737 2309.2737 3276.1805 34266.5648 4762.073 16146.5293 43817.3309 13823.4019 7620.0588 81608.9607 116164.8797 12107.1352 5732.2713 3385.3983 3665.4781 3948.9975 374330620 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 5683.8309 2719.162 2434.4936 5156.8438 7121.6059 94748.7093 4621.8144 3284.65 3284.65 2937.9435 8377.0616 4397.2872 4766.6815 3240.4993 3355.6903 8759.4095 2830.9897 3876.5342 3652.2162 3741.5472 295106626 dsra Sulfur sulfite reduction NA Gordonibacter pamelaeae 7-10-1-b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Gordonibacter;species:Gordonibacter pamelaeae; 5998.0013 3521.1976 4908.4658 8074.6618 2768.3403 7643.3485 9852.4867 9024.1956 5348.2423 2339.7143 149176727 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 318185.4579 2264.6742 2413.4762 3545.462 4220.8252 5158.0283 15319.8409 8219.565 8219.565 4777.8247 19991.3868 3380.5358 13994.1869 46116000 amyA Carbon Cycling Carbon degradation Starch Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 16381.16 7194.5581 2607.7072 5196.3133 3834.743 4145.5299 3093.6454 9828.1218 261835200 tehb Metal Homeostasis Tellurium Detoxification Halothiobacillus neapolitanus c2 4643.6325 9707.3339 6368.7459 6077.6079 9308.8157 2269.5159 373099713 dehh Organic Remediation Chlorinated solvents NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 420830.6926 5407.1642 3160.8344 23493700 terc Metal Homeostasis Tellurium Detoxification Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 4641.3826 91699720 terc Metal Homeostasis Tellurium Detoxification Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 8025.5952 13825.5877 15127807 pcag Organic Remediation Aromatics Other aromatics Hydrogenophaga intermedia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 17766.0331 2052.5821 7255.1118 5220.5775 4463.3522 2518.904 6129.6693 325951176 xylc Organic Remediation Aromatics BTEX and related aromatics Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 7759.8071 3848.8475 257202043 amyA Carbon Cycling Carbon degradation Starch Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 4262.8316 4408.0127 3619.3348 14125.9518 7818.5067 6120.8447 292489271 cueo Metal Homeostasis Copper Detoxification Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 17633.2246 16215.4835 4461.3426 5463.8218 9142.7194 6181.3818 123310.9314 56326.0162 3844.1647 10568.1229 7661.9458 6995.7846 5691.564 2777.4853 7535.9318 12690.9497 4219.2148 14359.6463 2888.3429 5171.1791 5572.3279 320594232 chnb Organic Remediation Other Hydrocarbons NA Grosmannia clavigera kw1407 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 4972.0143 4305.8392 3538.9505 5208.0258 3413.353 57790.8791 4572.8308 8933.8147 5053.825 4600.5993 3128.9264 8076.3917 7196.469 37330.892 3691.2659 3598.1151 2427.3856 8633.9313 356459983 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 41347.5278 14253.6831 256686284 amyA Carbon Cycling Carbon degradation Starch Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 10037.9022 333607334 arsm Metal Homeostasis Arsenic Detoxification Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5093.7768 7734.9029 2982.2128 3160.6277 4686.0694 5768.3319 2668.5523 2668.5523 6877.6726 3955.1893 3368.111 6016.2888 6200.7187 3031.4832 8745.658 1658.3604 4430.1657 3812.3988 2402.938 4058.7585 206685159 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 5725.2333 19142.4456 16638.8609 22590.6585 4315.1627 19825.3927 15064.458 221642.0655 9934.2559 4632.9416 102407.734 20973.9044 20973.9044 32279.3523 8509.9966 6615.734 16335.6109 4882.2124 6137.3395 9654.1642 25976.9764 20641.1465 49724.5827 19317.3864 17293.8862 7392.7298 18584.7995 5840.6421 9646.0798 377528764 nirb Nitrogen Assimilatory N reduction NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 6047.7536 9332.2701 2952.0783 7776.7027 5243.4995 10054.2197 12646.4011 4063.587 9792.5347 9792.5347 4615.2205 37917.9014 5457.9151 2556.1072 6816.9784 8882.653 2038.2124 3194.0376 40062477 gdh Nitrogen Ammonification NA uncultured marine bacterium 105 superkingdom:Bacteria; 5197.7414 2183.2615 89512876 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6310.6896 2798.4315 6319.8679 4012.4787 7747.0231 4604.0196 2964.4792 75704393 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 26206.6559 6648.2204 3438.4466 121799.0906 4197.2421 6207.5498 4258.337 43725.1267 2651.7902 2362.5069 1704.4156 3791.0037 94265339 amyA Carbon Cycling Carbon degradation Starch delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 5247.4218 10845.9344 3951.4855 3737.7818 161786332 B_lactamase_A Virulence Antibiotic resistance Degradation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 7465.9887 4184.5838 5423.7093 2540.288 2540.288 375109754 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 6022.7869 9393.6497 12233.3852 3382.9342 334342570 pcpe Organic Remediation Herbicides related compound NA Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 5854.4397 3860.0313 3594.4327 3205.6696 3727.4167 150427.5065 20894.5634 3368.9804 3712.8813 2278.699 5888.8011 48377.5027 4873.8949 5215.9446 8510.1301 3392.5146 4588.6217 354960885 pgk Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 6181.7282 126735314 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5137.129 365898525 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 11537.837 3181.2615 6136.5747 23136.2016 5351.4458 8835.3033 13200.8451 10585.4375 3316.2391 5323.8957 10456.4552 9259.088 2917.0732 6251.9909 311106581 arylest Organic Remediation Aromatics Other aromatics Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 4600.9707 10848.6493 324025596 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphaerochaeta globus str. Buddy superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta globosa; 91310.7143 242373215 B_lactamase_A Virulence Antibiotic resistance Degradation Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 5652.7683 386817700 alkk Organic Remediation Others NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 4565.9892 6583.1567 4503.0062 2425.9905 5712.3539 6107.7719 205038.8505 8276.4761 4969.0558 2142.2568 2142.2568 7364.6178 7488.6373 6754.1465 2652.6939 7266.2181 21943.4705 4326.1409 18151.6142 9479.2872 12612.7053 5201.537 13772.2496 7523.5721 3686.7009 5119.0568 385867054 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4682.9425 1947.5199 369982.7528 300763345 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6284.1813 3825.2075 4573.9952 5140.1063 380302281 amyA Carbon Cycling Carbon degradation Starch Brachybacterium squillarum M-6-3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium squillarum; 5479.039 237841645 gdh Nitrogen Ammonification NA Toxoplasma gondii ME49 superkingdom:Eukaryota;phylum:Apicomplexa;class:Coccidia;order:Eucoccidiorida;family:Sarcocystidae;genus:Toxoplasma;species:Toxoplasma gondii; 4476.8036 4928.1163 2799.4395 87302499 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 18300.6914 9462.4592 2599.6427 19531.5264 90417400 alkb Organic Remediation Other Hydrocarbons NA marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 85858.0114 157862745 dsra Sulfur sulfite reduction NA uncultured prokaryote 13347.7809 33148.672 54778301 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2270.6571 9747.547 9518.8707 223939330 chitinase Carbon Cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 6110.5336 3165.081 8756.0838 3551.715 3276.311 63114.858 8113.1747 5359.5451 5301.0257 3159.9549 9605.5044 4324.191 2131.7428 1605.2351 2881.8484 4516.6824 392953959 alkb Organic Remediation Other Hydrocarbons NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 6642.4953 334122799 pme Carbon Cycling Carbon degradation Pectin Enterobacter hormaechei ATCC 49162 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter hormaechei; 6432.2326 4473.1587 7602.2066 6917.9264 6650395 beta_agarase Carbon Cycling Carbon degradation Agar Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 2986.9274 4148.6011 6800.9287 8192.9028 4072.7015 5199.8177 3124.9386 304394505 pgk Carbon Cycling Carbon fixation Calvin cycle Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 2596.1984 5943.5048 4675.5456 4541.7559 3488.7235 2579.6708 60682569 pula Carbon Cycling Carbon degradation Starch Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 3746.711 5032.3143 77053.9038 5529.9294 3136.5205 10281.2658 6980.6545 5157.6441 5137.8527 3133.0408 3457.8241 6615.5097 2523.8554 13862.2561 7035.5707 2862.9956 4430.7851 3679.9614 4415.1214 5513.458 53729261 urec Nitrogen Ammonification NA Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 2529.7903 119459615 chnb Organic Remediation Other Hydrocarbons NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8802.2526 2111.3711 2711.8261 69725.5269 4142.7972 3328.6322 6532.95 3930.7187 4218.6367 7038.6525 2395.6343 2453.7935 7223.6679 2844.8056 10906.8557 4832.3397 6212.248 2862.9634 3500.2379 16773.7321 2497.2394 4813.4748 284030776 glucoamylase Carbon Cycling Carbon degradation Starch Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 4072.1709 6379.4252 140507.5577 11900.9068 10055.5406 390936662 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium bifidum BGN4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 2648.2948 4823.2483 4430.6539 7165.4367 10619.7008 3100.9084 3100.9084 8967.6279 5030.9261 51259.8961 12739.9538 6626.958 2802.4789 10053.4624 5812.6243 7656.1176 1992.2826 2780.1999 3739.1018 2729.7249 5601.6812 121699673 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3848.2908 3641.2095 4928.8289 3662.0868 83785.9982 2205.9358 2205.9358 5999.2654 3475.9124 12669.8029 3287.6964 5022.9414 27243.1229 6916.6498 2066.6365 4014.7155 3419.7976 9143.4981 347761298 PRI Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 18209.9077 61398346 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2378.4398 4026.9773 13694.0447 5917.6074 2527.1688 30315031 cellobiase Carbon Cycling Carbon degradation Cellulose Piromyces sp. E2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Piromyces; 1683.7872 4895.6578 4205.5069 5143.7675 2826.659 3408.0857 12667209 cmua Organic Remediation Chlorinated solvents NA chloromethane-metabolizing bacterium 1 superkingdom:Bacteria; 3094.634 218714.5954 4455.5335 5629.0901 16064.6931 4485.9266 5419982 phn Organic Remediation Herbicides related compound NA Rhizobium leguminosarum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 2421.9247 2413.8162 4394.6144 4834.3963 3920.5318 167389.9876 5725.5171 2046.0853 2046.0853 5837.0431 4416.2898 4733.9242 8811.8489 5099.1819 2133.9577 2764.3031 7538.5001 2575.1847 20049.9587 4125.1324 6989.3646 4725.308 3483.2765 6017.9542 88711809 nbac Organic Remediation Aromatics Nitoaromatics Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 3657.8529 3415.1752 3159.914 4288.7669 5800.0746 94864.8216 5724.6047 4238.9256 2285.8463 2285.8463 3405.35 8343.384 7342.6036 6132.1602 5096.1058 4627.9375 2189.8713 3086.6798 7484.4497 15080.0743 5461.7784 6590.7639 3431.1517 3317.2188 3975.1825 2672.0129 7123.1182 269959558 chitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 9044.8865 79808.1312 319804877 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 1933.8549 312796291 badh Organic Remediation Aromatics Other aromatics Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 7382.2005 7173.3187 3346.7684 3643.1055 192340.4767 5210.6226 2967.7308 5026.5764 4309.6811 3280.5072 5452.3314 2849.6412 11268.2323 5105.1049 9321.8401 1607.2772 3185.5364 2998.361 2871.4013 4896.7364 349780214 rubisco Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 2716.9913 308213059 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 3455.2349 6835.6593 67535865 amyA Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 3595.1175 4403.7309 3944.9567 268615674 cellobiase Carbon Cycling Carbon degradation Cellulose Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 2479.6339 5559.7461 5592.5181 6181.2259 3211.8425 383210530 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3750.2851 2004.8542 6884.6127 9669.5552 2490.8002 2490.8002 5963.7827 3506.8002 7439.0252 2399.979 45569.6184 2624.9992 7688.2254 3602.9898 5994.454 1645.2961 2715.3421 2639.8859 2172.2352 121495588 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2736.6649 3149.9358 260505158 chitinase Carbon Cycling Carbon degradation Chitin Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 7090.4039 3141.28 82505.4347 4757.1146 12174.7519 326986.6223 326986.6223 10447.7427 3877.1068 2646.8017 6770.1892 39526.0764 6630.8683 5025.2034 5880.259 2570.3784 2716.3975 312885237 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 3373.8816 2463.9061 1998.322 24925.2988 375081426 cellobiase Carbon Cycling Carbon degradation Cellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3106.0179 6199.7111 3873.0007 3452.9475 86140900 cda Carbon Cycling Carbon degradation Starch Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 3063.4563 5057.089 5134.3337 4557.9383 76507.8378 8269.7193 4559.7563 5704.8851 6568.82085 5854.1812 2411.8165 5727.831 3637.5298 6728.0152 1965.7187 3585.9607 5036.7361 3509.9221 4660.1749 219997665 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 1993.156 88859470 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 2098.5945 4068.2829 2065.5674 7934.7629 75626.034 9630.0342 3610.1811 3610.1811 3023.1716 8426.2961 6946.6819 7213.3962 4329.5254 3579.6805 5045.9332 11585.5309 5762.037 8424.0389 3562.3048 19320.8931 3286.8798 5816.4923 12539418 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3810.1104 6309.619 7325.049 96244.055 33020.1803 3259.1385 2358.5613 82171.601 18452.7422 6064.4704 5064.551 84778317 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14087.1874 5583.7091 3273.0298 2633.3829 15552.9116 3904.5783 3265.2375 3265.2375 4655.1854 5812.3192 2158.9813 7593.331 6709.458 2325.1935 3242.9487 2781.0349 297199942 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 2112.8413 3587.2518 2159.8101 2159.8101 3505.232 4788.7338 9318.6291 2658.829 51872739 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 2217.5993 4077.9877 5069.9701 2403.1583 3428.3407 3428.3407 11032.1124 4020.1258 4472.8833 3792.1988 16311.0321 2239.925 14483.7373 7759.1171 6541.3101 6726.7604 4294.7085 109649007 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6776.6199 2081.6276 289923.7753 7892.0788 7899.7499 18260.3732 1649.2333 6876.3081 4303.7523 53850115 soxY Sulfur Sulfur Oxidation NA Pseudaminobacter salicylatoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Pseudaminobacter; 1903.5139 116222165 hsp90_Stramenopiles Other Phylogenetic NA Synura sphagnicola superkingdom:Eukaryota;class:Synurophyceae;order:Synurales;family:Mallomonadaceae;genus:Synura; 5062.1527 5085.2734 319650965 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3149.446 3716.7035 2570.0055 3017.6174 70075.5044 4247.9885 3399.8395 3399.8395 2717.6383 10146.175 3908.0675 8041.4368 2502.4264 2560.011 8791.1917 5003.7119 2531.4641 3958.5197 4553.5096 3021.5132 7256.5301 163742759 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 2197.8826 3019.5558 5023.5926 4984.3634 3841.8275 3841.8275 8394.8277 6416.3877 4145.0974 4163.4207 9076.3266 6950.5307 10038.8569 4695.669 5755.5838 151246 dehh109 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2295.4512 3342.9231 4175.5969 7871.5504 5124.8485 3923.2811 2605.973 8215.3318 5096.0663 1824.7107 3384.1625 3171.68 119673871 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 2788.1403 2609.2153 3513.1061 10353.7642 1653.2543 114705098 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 565537.788 3706.641 5249.7753 4154.0999 4381.8384 295799321 cysJ Sulfur Reduction NA Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 14626.4804 4020.9122 3008.4471 6138.7656 5454.374 2671.6641 3237.1137 163787594 nbac Organic Remediation Aromatics Nitoaromatics Flavobacteriales bacterium ALC-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales; 2461.7059 152985647 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 6338.3319 3825.8741 20698.1708 5546.6866 4428.9935 8303.7008 4614.8208 39951761 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2370.5613 46307858 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 99459.474 11554.7331 4120.3367 5709.9745 328529979 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 2550.1476 2746.1578 4181.7453 76360.3931 3374.627 3310.5932 2791.5389 7718.9446 5307.4427 4001.3919 2756.8702 2358.5339 7829.6275 10233.741 6139.7975 5770.5028 2436.5405 4045.6192 3084.8244 7790.6587 163858047 catb Organic Remediation Aromatics BTEX and related aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 5768.4805 4285.3947 5972.5673 5430713 b_lactamase_b Virulence Antibiotic resistance Degradation Elizabethkingia meningoseptica superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia; 2419.0166 3414.0391 7405.9657 4806.5444 3237.3399 3301.3364 118581315 tehb Metal Homeostasis Tellurium Detoxification Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 9089.1993 3932.385 44112.5245 5266.6874 2200.3321 10218.1337 5397.5283 2911.7187 4229.0261 29335730 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus collinoides superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 2989.2467 4286.9355 4758.2037 6055.2861 43789.1062 7327.4456 2837.6279 2433.7423 31181.1169 4158.9138 5139.974 2206.1607 3555.766 2607.6991 55163264 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5587.2507 5200.9682 115432154 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7095.5659 6429.1252 2664.7602 106234.8375 2314.8557 2314.8557 12215.4837 8016.6135 2061.5956 3303.4778 4469.9953 8376.4601 121709492 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 2823.3745 7225.5067 3609.472 7897.9592 2757.8103 2757.8103 319996076 amyA Carbon Cycling Carbon degradation Starch Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 2515.4164 6994.4505 4662.3014 4626.8081 5139.5802 3656.97 6264.8102 2837.0486 4561.3555 390414273 ppx Phosphorus Polyphosphate degradation NA Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 2445.0083 4208.6813 3537.1869 3537.1869 2218.9267 1612.2307 214037815 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7709.5312 2195.8788 3256.3167 59421.452 12697.6742 6552.5755 3860.4594 3818.658 2067.0633 3016.0558 88643351 dsra Sulfur sulfite reduction NA uncultured prokaryote 4892.5959 3240.812 67518.0429 3525.9601 5555.9949 3197.2923 3197.2923 4649.9154 5868.6043 8100.642 5535.5474 1606.9866 2101.1508 82702532 amyA Carbon Cycling Carbon degradation Starch Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 2428.2579 5107.2736 47824.9363 2921.7779 3927.5793 422313921 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2895.6882 4139.1474 2638.1073 159180360 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5398.3668 2902.0677 59663.8459 2468.0514 162285371 mer Metal Homeostasis Mercury Detoxification Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 2848.9013 31185.1107 5161.5705 307596642 amyA Carbon Cycling Carbon degradation Starch Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 3223.4313 2353.7074 4302.2287 3805.6073 3197.6966 5410.9485 3145.2209 4302.5854 4166.4357 4423.2381 2294.7402 2629.0913 2058.115 1897.6052 3002.9492 2218.3664 5603.9085 220922666 msmabcd Organic Remediation Others NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 8362.6439 6738.3498 3011.139 7141.6668 36181.7824 21471.7716 3895.6809 218440517 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2580.9309 1980.2153 3138.3947 5721.7797 5721.7797 5340.3521 14263.5473 2545.0061 4460.9048 2506.8562 336436297 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5678.1775 88990.1195 6406.272 3138.6604 7161.0691 5601.4628 2204.466 3230.8262 381384294 atza Organic Remediation Herbicides related compound NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 3292.7067 3198.9686 3973.8286 3063.6702 70407.4776 5572.5402 7739.8471 3997.269 5398.1849 2737.3018 5325.2453 2434.5786 10241.9464 5831.8072 2361.4443 3343.7646 3801.791 2802.6484 151302263 aps_apra Sulfur adenylylsulfate reductase NA Desulfonema magnum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfonema; 5328.8769 262191790 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 34645.5869 2602.7918 4554.8204 7599.9772 2592.2019 2592.2019 43304.3535 6663.82 14500.0457 8929.2845 5892.3647 3490.4555 2736.2222 5958.4054 2837.4471 5888.8667 8420.8678 2425.3279 262368954 pcag Organic Remediation Aromatics Other aromatics Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 2880.0086 4838.6653 5202.4845 2650.4829 123443563 arsc Metal Homeostasis Arsenic Detoxification Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 13116.6121 3721.2676 2961.8864 393197.3721 6347.0835 4118.233 13662.6169 229610704 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3362.9303 2387.0439 4937.5614 4893.8095 8366.8763 15154.0349 3660.7479 3660.7479 3077.8639 9572.032 6033.0977 3748.0036 11640.2847 4090.0356 2143.6097 2510.1912 5453.3302 5633.0175 10617.7135 4456.7965 6525.0203 2695.0875 3051.7502 5685.6767 2277.7127 408480962 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. R81 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 20931.6418 7070.5608 219863646 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 1860.7814 7793.0141 5844.4347 13513.0198 4757.6068 171650.0383 4281.6659 4229.2293 4229.2293 7674.6084 3666.1362 5238.8303 10432.2743 1982.0451 3539.4102 77378655 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1948.1216 312114862 SoxA Sulfur Sulfur Oxidation NA Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 7722.9932 2997.3563 4257.9119 3174.3816 3174.3816 7243.1044 4568.3915 6037.121 8914.6467 9452.1691 5927.3905 5636.2567 2473.4708 3769.5352 2325.2641 7272.7998 335351408 urec Nitrogen Ammonification NA Lactobacillus ruminis SPM0211 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 5844.7974 164455856 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4841.6324 3811.0235 3232.9114 8263.009 17465.096 8805.1266 4541.7789 2952.6323 3652.4824 6510.5886 2462.0732 2950.121 2652.3911 297592209 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3472.9008 2908.8597 89899144 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 10272.0908 26889.9927 4321.2219 4004.3572 53628.1079 2974.5872 2974.5872 7139.3078 3575.207 4446.5379 7508.0616 7390.4001 7131.7489 2650.5371 2443.9704 2810.0857 1987.9046 125487489 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. C203 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 22064.429 5474.2999 2684.9153 5272.2777 257837692 endochitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 49187.7212 15272.2197 55820.4162 12427.0728 7400.1685 309252565 phenol_oxidase Carbon Cycling Carbon degradation Lignin Beauveria bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Beauveria; 13741.2234 164456058 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3813.1568 3620.0812 78254.3574 5603.8048 4276.5447 5940.9007 2750.4135 262334258 alginase Carbon Cycling Carbon degradation Alginate Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 3715.344 2595.2876 3461.859 2897.3014 4721.5228 3891.4899 3891.4899 9752.9307 9751.012 6127.4071 3088.1039 7874.1251 9810.5337 8178.15 1927.2437 3452.9675 66967859 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 527904.3157 2110.8698 2165.9844 2949.211 5426.393 2622.4996 167266.0528 3891.1565 5021.4927 3675.2616 2593.2081 36235.9512 64880.0121 9453.1425 10442.9321 8971.2585 114740605 FBPase Carbon Cycling Carbon fixation Calvin cycle Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 2508.4381 2886.8147 4809.3594 8071.5909 2799.6036 5409.1909 5722.5741 15386.2707 2599.4237 9697.8901 12380.6424 221734596 amyA Carbon Cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 3021.4444 333483118 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 6063.328 3735.8087 3519.6927 2242.5412 2752.9409 170934109 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 2950.965 2933.8819 3640.5019 5351.5841 4598.7842 5756.1914 7474.0679 6209.7321 3587.3488 2942.5331 343806557 hzo Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 3135.9754 3212.7222 8395.2786 5180.3653 4161.3547 4272.6835 2619.1795 2335.6699 5470.5635 5320.5401 1867.142 3307.5832 3105.4026 2335.876 259456524 FBPase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 19370.491 2361.3264 9061.3727 7337.767 29027.4349 4973.3797 339627796 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus TPY superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 5835.3337 2855.8673 3172.1194 4561.3605 4892.6542 64934.0683 6734.1739 16767.9671 5802.9373 3711.7279 2180.4582 12345.8398 2152.6817 9425.6907 5212.6412 2761.0161 5089.9815 2204.7799 4971.7939 319434819 phn Organic Remediation Herbicides related compound NA Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 4218.3262 2423.1201 11048.5788 4245.0388 10885.2914 2876.6577 5312.5734 15463.4135 4473.3248 64239.839 13038.2808 11849.8689 4103.841 146815.3434 1884.5043 4806.9485 4230.198 104521.0479 5953.214 121945061 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 51945.8182 2476.1971 3037.3276 3887.7325 3102.5402 5887.1817 4708.8582 4308.623 21913.042 4862.6251 7124.9439 8829.8993 2141.2334 13550.7465 5323.8304 5005.8851 4086.6919 3350.2223 2807.2534 332036989 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas haloplanktis ANT/505 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 23168.7137 10021.707 94310460 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 2345.1214 4493.2832 4526.7902 5381.7908 3672.2706 398064154 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium sp. CF122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 2222.0752 6135.9639 5335.8163 4326.4137 5507.4706 213408365 glucoamylase Carbon Cycling Carbon degradation Starch Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 11313.6878 7136.4965 100810.9948 5539.9346 2710.3467 4608.2439 6762.0645 4747.6937 4747.6937 3273.1975 9655.5278 4191.3036 16106.046 9375.2295 4276.1368 2591.6535 2836.9559 6547.0494 55080.2566 15183.6969 6681.6865 4002.3221 5915.4936 6811.974 2382.8806 302138040 dsrB Sulfur sulfite reduction NA uncultured Desulfovibrionales bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales; 4690.1387 19149.3143 6835.7784 9793.9175 4314.5134 3356.4763 3958.2898 4841.8756 2594.3496 2594.3496 8008.3739 6479.708 3893.0974 6288.1101 3565.028 3487.2553 7327.4509 5102.9442 184927.7453 9570.171 10109.3814 2178.6132 4199.5547 6716.3973 3137.7344 170692550 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 8248.752 6699.2117 18810.4393 24202.8374 2832.9097 335039361 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 1767.838 3432.3646 4156.7003 2601.0458 3188.2738 289177714 chrr Metal Homeostasis Chromium Detoxification Bifidobacterium animalis subsp. lactis BB-12 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 18667.9841 18756.6715 8348.5511 4374.3356 22118.5318 5445.3231 2534.523 3023.3374 6335.574 12983.3692 329894440 xylanase Carbon Cycling Carbon degradation Hemicellulose gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1778.4195 4199.779 7301.7451 53917.5315 4983.579 14129.997 237499907 arylest Organic Remediation Aromatics Other aromatics Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 3053.1175 64888.6092 7380.6618 5298.9501 11877.7035 11168.5621 6334.7441 3624.3607 8432.9486 3574.6389 5247.2148 381371143 linb Organic Remediation Pesticides related compound NA Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 1847.048 6165.3744 4103.0868 2371.59 8720.149 28401.8835 4244.0653 3008.1739 334138594 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7762.094 3282.8433 4851.1203 6050.5462 7324.7169 7954.6445 7954.6445 13374.2936 9030.7828 3265.7223 33146.1421 2928.721 326635590 cda Carbon Cycling Carbon degradation Starch Alicyclobacillus sp. A4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus; 9452.1927 3530.4546 3233.598 6350.4119 3761.9752 7525.9363 3563.3917 4164.6506 5088.0825 6752.9958 5735.2842 2373.7659 5937.6887 6009.6807 2338.0919 4316.991 3601.0273 2681.9844 189436023 cda Carbon Cycling Carbon degradation Starch Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 7184.5261 2551.4973 2551.4973 225175018 alkk Organic Remediation Others NA Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 4047.0714 3309.7334 5874.0966 345530361 cda Carbon Cycling Carbon degradation Starch Flavobacterium branchiophilum FL-15 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium branchiophilum; 3324.2171 5592.566 3845.853 2702.5853 9899.3505 5115.803 3175.2629 5025.5569 2073550 cbaa Organic Remediation Aromatics Chlorinated aromatics Conidiobolus coronatus superkingdom:Eukaryota;kingdom:Fungi;order:Entomophthorales;family:Ancylistaceae;genus:Conidiobolus; 2564.9533 3206.2039 3021.5196 8620.5164 7226.3984 5085.7067 4154.8903 6766.5885 7067.872 36864.7873 5284.0572 5903.1794 3878.6861 3889.7019 6578.7046 189185136 ppx Phosphorus Polyphosphate degradation NA Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 6185.5158 4769.7785 3089.4635 2728.8163 4116.5595 7124.2378 8900.5541 3347.3622 151302287 aps_apra Sulfur adenylylsulfate reductase NA Desulfobulbus marinus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 2557.6778 65419.482 16251.9731 326803185 ppx Phosphorus Polyphosphate degradation NA Aerococcus urinae ACS-120-V-Col10a superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus urinae; 5308.1902 3526.7164 193088224 nifh Nitrogen Nitrogen fixation NA Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 3222.7886 262380074 one_ring_23diox Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens SH164 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 29329.076 3819.8362 4215.3808 77378581 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2127.7096 5449.9178 6096.4322 6665.4619 3841.3568 114227201 dsra Sulfur sulfite reduction NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 7234.6809 2612.5522 2551.8434 33634.2747 88418.5678 72618.2794 3757.8636 7614.6519 4829.2045 3718.6105 6520.9127 5478.1656 4897.1566 25787.0812 34291.2643 19990.64 3934.6697 11862.7718 6102.6794 6126.6108 3041.5939 4068.6819 3346.7395 4628.8367 9363.6725 302778603 chitinase Carbon Cycling Carbon degradation Chitin Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 7228.7572 4068.4144 3936.5542 8398.1797 58315.7951 2955.1152 2955.1152 24211.7124 4771.0984 4718.7597 2612.5866 2480.9236 2996.924 156930.8962 5769.6929 5433.7322 2289.5886 3544.0715 3195.6717 5707.7119 37547927 tfth Organic Remediation Aromatics Chlorinated aromatics Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3013.4032 4109.6763 3412.185 46519997 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8562.3338 357635536 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio sp. FW1012B superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 3938.7489 197471.9734 7146.5022 4106.0049 5848.9008 6344.3095 260588933 amyA Carbon Cycling Carbon degradation Starch Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hansenii; 1857.1562 3949.7316 87301577 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3104.348 75886.0423 2454.8434 2454.8434 1819.3907 2634.6573 283814984 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 3307.4972 2608.0952 65977.2968 2414.07 7646.24 3730.7378 4316.2988 2298.207 4262.9622 115522777 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3477.0774 6770.8152 384067432 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 2815.2099 3387.8952 2885.0023 5356.1312 6995.9097 7630.4229 6096.1593 3755.2624 6581.4972 3822.0199 3254.4257 261819664 alginase Carbon Cycling Carbon degradation Alginate Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 2991.642 4589.8001 4041.1386 7292.6635 4945.4259 5395.2144 5842.0601 1971.5977 5209.9544 7288.1709 2923.6891 3584.4943 2454.997 56798497 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 11785.8288 17385550 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2238.0895 17322.5612 5037.8026 5733.4022 324972314 alginase Carbon Cycling Carbon degradation Alginate Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 7119.7309 3164.4492 5537.432 24346400 b_lactamase Virulence Antibiotic resistance Degradation Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 3807.3888 17178.2594 7071.8278 3649.0265 9206.1247 42131.7872 42131.7872 8908.8832 6032.3373 5432.457 6619.9835 33290.4727 5103.82 16849.4586 6697.1833 7099.4831 3857.1349 6687.3686 3874.1181 4520.435 84786545 amyA Carbon Cycling Carbon degradation Starch Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 2311.3428 4702.7066 5576.0079 4174.839 2486.2259 2486.2259 7641.0701 3478.5504 19156.2297 2400.0969 5896.2148 3134.4962 256720995 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 202912.1971 3593.5849 73534361 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2195.025 4458.7178 4391.7082 5207.0077 3249.2501 227369320 ara Carbon Cycling Carbon degradation Hemicellulose Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 3126.7131 4174.6224 22365.7266 5261.3101 5196.7638 8049.5793 5169.1294 5597.7522 2895.8763 3467.2287 2575.1365 331696904 catechol Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 6737.8179 152145138 phytase Phosphorus Phytic acid hydrolysis NA Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 5231.2257 3155.054 4212.8639 6709.1483 9469.2938 4844.3823 3750.1889 5563.6796 2156.7463 5493.2519 3896.6531 3456.7179 156446871 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2804.1028 3956.6702 407462059 chnd Organic Remediation Other Hydrocarbons NA Candidatus Nitrosopumilus koreensis AR1 superkingdom:Archaea;phylum:Thaumarchaeota;order:Nitrosopumilales;family:Nitrosopumilaceae;genus:Candidatus Nitrosoarchaeum;species:Candidatus Nitrosoarchaeum koreensis; 3884.2441 164455802 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2007.2103 4139.6221 4762.7383 1623.7029 343429178 bph Organic Remediation Aromatics Aromatic carboxylic acid Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 2899.8844 2312.4687 4071.9523 374856759 terc Metal Homeostasis Tellurium Detoxification uncultured candidate division OP1 bacterium superkingdom:Bacteria; 18235.1566 323386356 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11061.035 52583.2972 387889193 narg Nitrogen Denitrification NA Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 6315.022 9864.4291 5801.5262 3963.5837 7813.7633 7287.8643 82410669 pchcf Organic Remediation Aromatics BTEX and related aromatics Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 5101.1968 3352.6309 5665.1394 3169.4119 39983377 phenol_oxidase Carbon Cycling Carbon degradation Lignin Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 2119.1026 5736.2178 91303.4025 5195.4065 3538.5811 7898.9036 3086.0028 3086.0028 2496.0324 1695.6854 4402.5035 307686894 amyA Carbon Cycling Carbon degradation Starch Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 4156.0263 3596.502 4610.7811 5201.6069 2863.0884 3363.7733 73533831 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1724.6663 8765.862 6851.9538 2552.812 3593.5746 297143838 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 3076.9668 2574.3878 3003.0151 5346.3147 65309.4923 4131.2075 6693.7204 3900.8489 5013.0613 2539.4177 4918.6581 2392.5832 3953.7961 5926.1355 336431615 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 2_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 2772.0571 3193.1558 70227.2162 3956.5539 3381.6291 6210.3227 4229.0712 4200.7771 6226.4929 2941.3072 2319.5309 5146.8841 11080.6668 5691.4936 2136.1984 2611.0557 7708.7917 47458802 fcba Organic Remediation Aromatics Chlorinated aromatics Alcaligenes sp. AL3007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 9725.4529 3106.539 6181.2195 4691.0815 2575.5479 3564.2767 375160324 C_CoA_hydratase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 2955.6411 6068.5202 3802.34 6295.8653 4214.5233 3088.4566 5407.6438 2759.2945 3336.3823 32879.9879 68536202 terc Metal Homeostasis Tellurium Detoxification Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 2109.6734 4225.8924 5666.0908 4283.9146 7493.0805 4402.6336 10294.4536 5015.662 6416.6694 5838.7817 3511.3963 2761.2226 9488.6035 9941.1002 3768.6322 3514.8486 5690.486 2985.4839 10440.1228 212544864 dextranase_fungi Carbon Cycling Carbon degradation sucrose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4614.775 311284532 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3208.9537 2076.8546 5472.1557 158336347 nirb Nitrogen Assimilatory N reduction NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 3787.4071 3524.4524 3585.6753 2849.7776 76334.6591 5108.4333 3048.1839 3048.1839 2545.6056 4585.281 5353.7127 4339.2349 5939.8714 11357.125 7196.5225 12087.658 1823.8781 5310.5206 3649.7065 215414289 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2013.1656 3388.5057 58510.0128 4293.2471 3549.3792 2652.2674 2652.2674 6770.0799 3558.7463 3743.0505 4951.7074 5566.1535 14191.3937 3834.1821 4688.5629 3791.3388 3945.0218 297619227 nifh Nitrogen Nitrogen fixation NA Methanococcus voltae A3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus voltae; 67210.8716 397682090 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Natrinema sp. J7-2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natrinema; 5031.5146 2472.16 3321.6472 132795.4039 4877.9271 7498.539 2246.8389 2246.8389 8733.9955 6326.007 5726.7525 7578.0924 4834.1658 7789.2494 2611.6439 10805.1779 5703.6534 7739.7066 3030.7023 7412.8916 3432.5351 8226.3528 62468094 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium superkingdom:Bacteria; 3492.6934 7504.2657 2648.5634 30235.6188 4666.6981 17151.0198 2712.8662 2712.8662 7975.8688 4418.2938 34083.7318 3725.0773 3650.543 10420.7741 5868.4288 6664.1174 2580.8331 4904.2398 3670.5312 45524 ara Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 4131.0349 8798.9474 7575.1929 2943.1636 6297.2897 410615901 nfsb_2 Organic Remediation Aromatics Nitoaromatics Glaciecola polaris LMG 21857 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola polaris; 3527.7521 146825.3452 5317.5968 5766.5987 4058.2104 3845.463 93114.707 3831.3459 135529.0846 3951.6363 3951.6363 4339.917 7196.7856 5639.6766 5655.1496 15096.6422 2212.973 6910.6816 210270.3744 18984.8269 6197.1436 6994.5575 3917.4943 6935.1296 7820.5751 3640.623 5129.2948 353209699 TIM Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 4877.4149 5201.5092 6385.6731 81503.1701 7199.8918 9671.7395 6141.6177 6141.6177 6925.741 3183.8772 11887.9173 10226.8832 2340.7731 4470.0954 3506.6425 118170097 aln Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 13375.3356 2638.5857 7310.6474 4582.798 2711.3235 169624371 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 10974.7677 3666.3012 4577.2031 19001.9276 93800.7135 4718.2252 6497.7871 5555.6823 3235.5579 129279110 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2448.2783 3455.3997 2328.838 74782.1926 5834.0362 8633.7794 10301.8659 6029.9073 3622.5762 8679.6155 6816.1027 1936.1403 2450.8133 3342.8817 3453.8301 5954.2973 240129602 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 2177.4215 12752.2038 3551.0446 4589.1037 3557.9635 6898.6509 35567.513 22018.856 2783.2396 2705.0854 365119967 amyA Carbon Cycling Carbon degradation Starch Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 2121.4353 5348.9958 15513.2519 4467.5663 6663.6955 5400.04 78851.6174 4308.8608 10137.5463 6378.0475 6378.0475 3514.4958 7323.9811 6089.4383 7706.0946 6386.2206 2796.5695 7756.7735 2394.9305 13525.2772 5535.2593 9916.3892 5182.4847 3952.8263 19198.6638 3281.5997 13701.8268 17385540 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1918.8459 3342.7231 3193.6175 3464.1016 3150.2051 60832.1174 5312.948 27902.4907 1064052.3801 5298.4058 2823.7996 2415.1404 3032.652 4899.5026 5319.6553 2782.2085 4656.76 5354.5032 342825649 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2068.7292 3727.3555 6219.8713 4423.5817 2288.0953 4259.9397 6341.1764 2818.0386 375337593 urec Nitrogen Ammonification NA Succinivibrionaceae bacterium WG-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae; 11553.5881 94471255 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2985.5702 2282.0563 7033.8297 8020.301 4767.5829 154158914 exochitinase Carbon Cycling Carbon degradation Chitin Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 2128.6396 275995.7853 4937.3448 3710.8829 4577.5398 2483.2925 2788.2661 2154.3331 2461.635 4218.1186 160888311 amyA Carbon Cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 1829.0164 342834241 pula Carbon Cycling Carbon degradation Starch Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 4441.9629 7103.5101 4227.0501 11230.2455 5337.82 1329052.376 3964.3564 7828.4456 3475.0581 3475.0581 9124.9903 3613.4282 5836.2892 19000.2855 3805.0449 17928.6068 9283.1812 3069.0678 13716.041 5428.6636 2390.2938 32476822 arsc Metal Homeostasis Arsenic Detoxification Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 3607.8838 4544.4695 4570.4445 9844.7552 6068.0229 4098.7479 2479.7289 2307.1531 11821.1311 4298.7113 7630.0093 4178.0221 20695.1998 83636151 endochitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 2549.016 2569.1424 10684.5641 3957.8763 154677.6008 26380.8772 2002.4306 2002.4306 3062.5515 5193.2289 7477.6846 2442.9744 4809.1981 1745.217 261286774 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2397.6101 64155.2877 11397.3233 3593.9972 2357.7351 3206.9122 2914.1896 222546860 toma Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. W1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2693.8201 4847.5806 1626.6956 90419526 ppx Phosphorus Polyphosphate degradation NA Aurantimonas sp. SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 2113.6317 11601.9912 10700.0724 6102.5197 7225.7073 4382.2965 5763.8357 2197.25 3307.7712 2762.4903 3310.7021 4963.6585 355373879 cda Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 302 str. F0323 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella rava; 9119.6564 5437.2184 3955.2285 7061.5872 4034.8781 32895244 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3742.7637 148342406 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3221.9644 2873.7214 1961.3299 4657.2748 60978.1945 5292.4849 3838.4623 7056.5713 13045.1416 4299.3525 2375.3403 6272.9329 17685.44 4736.9033 2358.978 3062.1917 3412.8508 313148591 amyA Carbon Cycling Carbon degradation Starch Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 2661.0958 3106.8263 3668.9857 4272.8538 5999.093 106245.2265 4015.0941 4964.4983 2759.0025 8396.8887 6191.7359 3401.9214 5160.3214 5520.4186 2717.1215 2458.1213 7200.2 3185.5258 42836.8009 5287.8173 8885.5045 2806.1004 4462.1887 4416.3653 3193.2579 8762.6051 358639257 amyA Carbon Cycling Carbon degradation Starch Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5915.8478 4477.8974 2344.1222 7778.489 375138306 ppx Phosphorus Polyphosphate degradation NA Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1981.9234 4571.1091 131168.9492 3648.0062 5702.3343 6316.5067 19197.0228 9345.9595 126212.6943 1997.871 3840.0404 148271489 ara Carbon Cycling Carbon degradation Hemicellulose Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 3359.4647 4032.4302 2538.746 99332.2709 5595.8737 9682.3207 9682.3207 6138.7789 28430.0981 10887.9854 11996.9218 3594.1489 5843.9494 9897.4117 7248.1088 7898.1132 11408.1871 4698.4749 2260.7735 331695416 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 10459.6938 33296.0076 16655.3544 23668.3592 3351.2979 3351.2979 7809.725 3478.2569 9049.2147 302899584 protease_serine_fungi Carbon Cycling Carbon degradation protein Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 2543.6797 5458.2492 3411.4535 6016.8243 5919.5694 2537.6159 5786.3984 1908.8116 339733973 napa Nitrogen Dissimilatory N reduction NA Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 16386.5329 3112.2803 5055.4829 4845.6424 77378405 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3449.6844 5136.6295 3971.2987 3971.2987 5213.519 3497.7915 3876.3948 260850334 mnp Carbon Cycling Carbon degradation Lignin Russula xerampelina superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Russula; 2153.9997 92910784 ophc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 5169.9921 2239.2518 2088.5263 13649.9482 85821.4155 3483.2773 3753.9202 4990.5702 4511.8508 2403.7127 4641.4984 2276.2763 5070.3604 2731.6256 2710.3489 2936.2865 10677.3817 381202798 amyA Carbon Cycling Carbon degradation Starch Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 2880.7308 2992.2477 3715.5335 8695.5363 3737.85 7467.4291 4071.8093 23732.9297 7539.8297 12701.6297 2843.2997 3877.7627 1905.2589 3088.5898 4962.8891 2654.5935 4879.6275 380681986 arylest Organic Remediation Aromatics Other aromatics Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 3606.9754 4387.8035 6973.9036 72410.2399 6197.5108 4290.2831 4355.4313 4355.4313 6710.5752 11052.4105 5678.9764 2869.3873 3526.4743 7532.5768 4263.1531 34634.8312 6423.6908 13039.3903 3232.372 5248.1575 5500.5744 5359.6299 7126.4278 319810224 cellobiase Carbon Cycling Carbon degradation Cellulose Coprobacillus sp. 29_1 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 2839.4063 6428.9674 269468564 sqr Sulfur Sulfide Oxidation NA uncultured SUP05 cluster bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales; 9359.9856 43820.4519 2548.1554 2142.3634 388437359 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter sp. 115 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 3212.7338 4805.0682 2556.6416 58366.9354 3424.7668 5275.2154 2127.43 2071.1407 2808.1834 3355.2098 2006.5701 1653494 arsc Metal Homeostasis Arsenic Detoxification Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 1818.3382 4600.273 5294.6119 2358.9324 57224568 nifh Nitrogen Nitrogen fixation NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 3381.7765 16491.9236 52347164 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 2219.9163 223982888 amyA Carbon Cycling Carbon degradation Starch Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 17632.5708 4573.7795 308275152 arylest Organic Remediation Aromatics Other aromatics uncultured Desulfobacterium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 11019.1846 10597.3415 4861.0068 6786.7766 5477.9864 2292.9225 168991371 ppx Phosphorus Polyphosphate degradation NA Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 6176.2832 63942.2953 4119.1412 2716.265 2716.265 3339.2138 319902299 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 9742.3217 297569190 dsra Sulfur sulfite reduction NA Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 1698.1866 3904.6906 4076.8641 3596.1343 11408.0515 83225.265 3496.0138 2266.4483 2266.4483 7098.7296 2454.5737 5810.9407 3449.0546 7733.0891 4293.013 6481.7483 2063.6542 2753.2519 2752.1486 2026.086 5846.1671 226347004 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1759.962 5585.5105 3554.1438 1878.3467 5178.0636 148253559 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3151.7313 2352.1835 2135.9777 4022.4684 4643.4201 2747.3689 6512.543 4469.3725 4704.986 5700.5073 2685.8545 12607.1647 4469.2476 7035.725 2127.7097 2911.8392 378577118 ppk Phosphorus Polyphosphate synthesis NA Saprospira grandis str. Lewin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Saprospira;species:Saprospira grandis; 8372.586 30833.5905 10050.9414 269707.3431 4184.1002 4254.999 4254.999 6467.2537 11214.9924 4477.3197 4393.6022 36959091 tfth Organic Remediation Aromatics Chlorinated aromatics Rhizobium sp. NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4835.2044 3743.5723 30248751 badh Organic Remediation Aromatics Other aromatics Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 3303.067 2874.8908 4283.8127 6071.3914 86426.2143 4326.1308 4727.5164 8888.1946 5964.2014 6606.466 2669.5459 7016.3609 2764.574 5437.2345 9893.6489 3481.0243 2895.0642 4629.9481 3952.8527 5973.5155 151302319 APS_AprB Sulfur adenylylsulfate reductase NA sulfate-reducing bacterium DSM 12567 superkingdom:Bacteria; 4016.4109 13603.4311 4998.098 4616.9538 4198.7382 34467.5586 4536.1849 3581.2089 2164.6367 4389.887 6497.5313 2135.0937 2743.2377 12823.5978 9216.316 154488252 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 2726.0991 7763.3957 2324.5028 1760.7389 5359710 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas fimi superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 5484.9142 2395.7366 2862.8719 1814.1608 1814.1608 1700.117 391858402 amyA Carbon Cycling Carbon degradation Starch Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 2555.5249 2466.8187 3508.631 11037.9831 2716.7678 4590.9868 3324.2581 2687.8633 2687.8633 2530.9093 13516.9895 6309.6529 5318.3633 5826.9329 2202.4924 13921.3601 3983.3238 3462.811 2042.4612 2870.3131 2919.2456 3298.9893 5284.3266 149783147 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5046.0017 25581.2598 3966.6931 2271.6243 39564 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2503.6798 123977750 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 21493.1843 3051.4162 4034.4342 2673.9005 6871.5703 2391.8215 5587.3079 15697.3173 4555.2909 5394.7043 2129.1958 3587.8358 2908.8819 2267.2963 5595.0108 315590110 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 7457.4957 5214.07515 2171.0204 7035.2931 5982.5708 4259.5651 107648.3436 7405.0025 4272.6669 5151.0116 3655.6836 3655.6836 3056.2381 9808.116 5855.8746 14927.8473 5902.0656 4599.968 4219.408 2522.4244 6832.5808 2389.6831 10999.8849 6884.79835 7553.8683 4014.8992 3094.5574 5434.3903 4381.3998 5693.4571 60494037 amyA Carbon Cycling Carbon degradation Starch Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 3280.1764 2888.2849 2312.8607 3743.0181 5018.7578 111212.177 4121.6548 6538.8755 3790.0184 7229.9083 5615.0598 3009.7168 9220.8923 6463.5341 6518.4237 3387.4022 3120.3374 3885.1442 2715.3596 5540.5721 77378631 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4982.5078 11805.9494 31727.1692 5781.3909 7199.3194 225568119 ppk Phosphorus Polyphosphate synthesis NA Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 2812.4658 7616.3812 2593.1263 3067.7341 3687.3057 140890.5881 4574.4753 6744.1694 29419.0264 29419.0264 3419.4215 6309.8476 4710.3107 5022.9776 24811.1273 3388.2239 8099.3868 3022.8825 15478.9152 5017.2311 7722.2978 2674.0627 3137.4466 3504.94 3179.4013 7681.1861 366166273 ppx Phosphorus Polyphosphate degradation NA Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 6223.6619 3857.4114 3104.4471 3620.4045 4068.5523 66713.2659 6602.8847 6960.9636 4395.5763 3693.2029 5104.6228 8741.1208 3798.7759 7823.704 2546.9657 3704.8607 2890.5128 5394.3318 300022373 msad Organic Remediation Others NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 2596.3967 7111.8018 5854.8071 229605.0256 8579.1232 2315.9425 2315.9425 5897.3691 4808.6664 2516.8305 5730.4648 2581.6473 11743.4143 8272.1784 1814.0629 4552.3532 2225.052 385183749 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1757.4089 349575038 terc Metal Homeostasis Tellurium Detoxification Neisseria shayeganii 871 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria shayeganii; 2549.6206 4691.6433 3675.6733 3956.9165 4003.5976 141725.0057 3881.276 6086.8031 8853.4196 4158.2391 4158.2391 3484.9086 7494.0824 5949.6178 5783.955 5422.2885 2725.868 2488.3298 8479.128 2428.1333 8143.8516 3557.5492 6575.857 3590.8728 2948.9804 2783.2703 2956.1752 46307967 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 279363.4474 5959.1765 4210.403 12159.7446 16567.1772 5019.9128 3676.944 11138.5053 2735.744 9985.692 160901714 xyla Carbon Cycling Carbon degradation Hemicellulose Petrotoga mobilis SJ95 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Petrotoga;species:Petrotoga mobilis; 3603.7173 3859.4339 57662.2377 3967.1837 2946.5635 6848.626 4095.5824 5636.4195 4975.9745 4546.0245 2280.5182 6413.4738 2216.9741 48226.4952 5421.6712 2436.3793 3266.8103 4343.4988 1947.7724 8022.9165 223892714 cysI Sulfur Other NA bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 4468.6299 2361.4524 2361.4524 86751203 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 22728.0017 40605.7776 4444.0834 7529.7896 5867.4648 8458.44 57230.2749 57230.2749 5830.0114 4129.7173 6127.0554 5450.938 2692.2023 108058.2598 1224489.808 5542.6558 6883.4487 4795.1007 400458.6945 3567.7799 8001.7615 73671379 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8273.8596 4013.8292 21722.3055 2795.2211 2795.2211 7097.4202 2383.1511 5768.6666 317492438 tehb Metal Homeostasis Tellurium Detoxification Enterobacteriaceae bacterium 9_2_54FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae; 3354.366 4516.2642 2975.5608 6635.7864 4086.7228 4827.1885 18181.5293 2774.8929 4755.2936 6711.1003 2118.7044 3438.4088 3205.2328 5838.0921 337749569 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5332.2995 13232.408 2323.4876 13620.0935 4978.3273 9253.0797 4914.0193 283814573 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 2122.46 55229634 dmdA Sulfur DMSP degradation NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 3358.8173 2837.3403 2194.5301 56911.1748 7223.486 48923.5381 11612.2227 2037.1499 2761.8452 4126.3734 3065.8344 315249392 gdh Nitrogen Ammonification NA Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 3508.6644 4583.4174 3562.3848 4010.6043 86452.034 3579.781 4706.2145 2680.9597 2680.9597 2988.465 9939.7433 5499.7456 5083.0479 5452.0236 6919.6673 3020.343 5538.611 2511.123 7360.8113 5188.1542 7156.31 3163.9741 3048.9531 4217.8719 2299.803 7651.8752 260652064 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 17087.1986 5229.1776 9016.6139 5750.5033 78214157 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. CC9605 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3673.4861 229002443 cara Organic Remediation Aromatics Heterocyclic aromatics Lysobacter sp. OC7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Lysobacter; 2411.5523 358752076 alginase Carbon Cycling Carbon degradation Alginate Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 3004.557 3224.6387 2280.9135 5733.1986 7037.5368 3815.7935 5518.1907 3421.4533 2303.2814 4355.5239 375310559 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4905.448 6794.8827 3615.4819 3804.8153 2030.7397 2030.7397 8779.5889 4309.9354 2230.2825 2115.3134 4013.4982 3197.1251 124025319 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. NATL1A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 1987.8958 4100.9202 18524.6344 4142.0361 398083199 poba Organic Remediation Aromatics Aromatic carboxylic acid Variovorax sp. CF313 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax; 2316.0486 4264.5337 31959.5084 3002.2402 3902.7875 9316.8012 4475.8554 3631.092 6740.7465 6740.7465 2970.6268 5621.5941 4513.5189 16910.4166 2560.5143 10310.6429 13995.7365 5776.2741 5764.5553 3645.1614 4655.5466 4038.829 110644993 alpha_tubulin_ciliophora Other Phylogenetic NA Nyctotherus ovalis superkingdom:Eukaryota;class:Armophorea;order:Armophorida;family:Metopidae;genus:Nyctotherus; 4098.2486 8373.2171 319414064 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 2901.9707 3223.4698 5900.1756 2351.7372 3986.1514 2074.29 2074.29 15898.8289 5784.4444 2700.455 13873.4682 3226.0491 3222.5069 3331.1624 2764.806 5659.3244 225352667 chitinase Carbon Cycling Carbon degradation Chitin Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium pseudocatenulatum; 5306.1212 4742.9177 4254.971 7817.4012 3821.4871 11038.1819 1823.4047 39839.1426 2339.7447 157285610 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4319.8874 3537.9222 5920.4187 5553.3734 7741.3249 3455.8309 216955.0686 4012.9264 35243.6465 2277.9398 2277.9398 8628.278 7552.5513 8389.8604 5166.861 5345.3944 3259.7633 7258.2868 5418.9786 9667.7877 5458.4792 6838.8943 3773.2673 4818.3098 5387.8937 4552.0044 8661.8069 95102016 dehh Organic Remediation Chlorinated solvents NA Burkholderia sp. FA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1981.2647 170027473 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3108.2958 6773.691 6373.6671 2690.7052 2690.7052 5340.7615 4159.8511 3786.6628 43676.0192 19433.0767 11445.8754 2586.2653 3658.3673 317169855 rubisco Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1892.5518 5151.0174 4490.0277 5911.0809 5934.7271 229378127 ppx Phosphorus Polyphosphate degradation NA Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 4799.9607 10574.7327 4171.1981 3989.0761 410661595 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. CF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 4238.3191 302915312 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 3508.354 2190.9723 18801.8975 18249.7588 12327.0734 96953.5165 99128.0555 2780.2376 14875.9944 57468.0711 385787631 arylest Organic Remediation Aromatics Other aromatics Erwinia sp. Ejp617 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 4512.1243 119451640 PRI Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7076.2608 7556.5448 2773.3762 21246.213 3125.2893 59674.958 22478.8783 2360.7675 2360.7675 3927.1108 9442.406 5016.1234 4877.4166 15608.8647 6854.3741 3235.1324 4140.7608 28970.6757 13531.9269 6079.4953 4420.7361 3743.2025 3780.8809 30536.9114 244655.7039 324317320 amyA Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 4327.9853 3712.8114 4839.8129 3868.2474 133404.9389 4399.9689 6595.3733 5538.5478 7591.0018 4505.0988 4638.8622 5983.424 6725.3269 7284.7074 4365.0487 9610.9196 8896.8244 2993.9634 4744.417 7034.3268 3742.5387 359774152 sdsa Organic Remediation Others NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 2400.7531 13267.9331 1902.1797 198257738 mannanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 2469.3455 3384.0648 3940.8096 5953.2079 76712.0042 3704.7259 6679.8528 6277.7091 2602.9672 6345.7588 6470.1273 2947.5575 42863.9394 16866.8198 2346.6417 4572.2597 8498.8644 1806634 catechol_b Organic Remediation Aromatics Other aromatics Sphingobium chungbukense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 1807.6009 6168.2453 6333.6439 7378.8333 4929.9488 4032.8965 8593.9518 5996.2569 4164.6029 3563.9457 13631.0082 384119848 chrr Metal Homeostasis Chromium Detoxification Acetobacter pasteurianus IFO 3283-01-42C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 14043.8461 158523069 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 3494.0601 2284.218 3263.3514 6475.6552 4235.1256 4142.3796 2357.0164 7366.4938 2278.4783 5762.4938 4078.0344 3275.5043 239629045 ara Carbon Cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 2162.6239 4458.2901 3252.7769 4049.0228 63870.762 4232.5822 2223.1749 2223.1749 4676.6041 7050.9093 4199.2657 5176.48 5739.1484 5723.606 3041.0817 2634.421 5806.3241 2718.4892 9473.6616 6831.4717 7605.3949 2082.8254 3759.6947 4442.402 2553.4588 7974.5635 71402616 nasa Nitrogen Assimilatory N reduction NA Gloeothece membranacea PCC 6501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Gloeothece;species:Gloeothece membranacea; 2598.6686 2150.216 4451.1589 2385.926 2385.926 5069.0433 3864.9566 6746390 cysI Sulfur Other NA Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 3063.7633 2304.6589 2825.3522 4117.2672 6477.757 4004.9859 103269.2162 5982.2796 3781.9995 2564.6645 2564.6645 2765.9779 8071.3689 4636.6923 8927.6256 4818.3288 8376.2811 2324.3097 3233.5709 6719.939 3778.5108 14371.247 6548.3371 72613.052 4083.7788 4674.1224 3117.8264 152065968 PRI Carbon Cycling Carbon fixation Calvin cycle Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 1849.4145 4233.4635 8787.4466 77816.4251 4913.0051 3399.8541 3399.8541 6430.2634 4986.4736 4074.8952 2830.1324 8953.1733 3614.3096 11809.3007 2061.9294 4786.0215 4084.9271 2054.5212 155964457 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 4005.6248 9241.9646 56443.1985 3151.5947 4245.1289 2983.0778 90740.5891 4713.7671 15017.5666 15017.5666 3224.1169 16486.5276 6111.599 7165.819 2579.0951 21137.0361 17242.2673 34193.4164 20885.4188 25156.0561 8446.7996 5327.8796 15558.2397 5731.8643 2233.5989 198263437 nasa Nitrogen Assimilatory N reduction NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1981.5071 15500.1499 5654.8057 5654.8057 6944.3323 4510.665 4020.8295 4788.1873 4518.2839 2490.5135 2395.372 5268.3483 2258.3513 11619.7073 5447.023 5501.2384 1887.9246 3740.8249 3715.6734 6318.1674 33391389 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2968.9243 7594.6849 380588504 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter coli H9 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 2814.8057 3157700 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 2990.8154 3371.226 8272.6729 2859.0482 95555.6231 3665.3152 6563.2912 4196.3981 2320.2102 2320.2102 7373.2582 5312.073 2153.9615 27430.1176 2695.347 5422.4831 6957.0425 2281.8747 54862.2662 6348.7931 13022197 atzd Organic Remediation Herbicides related compound NA Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 3868.1617 17017.465 17017.465 3851.7881 158954573 aoxb Metal Homeostasis Arsenic Detoxification Polaromonas sp. GM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 3158.3395 7594.0576 6242.9053 8393.8428 2949.3148 4266.5126 4489.65 291534978 amyA Carbon Cycling Carbon degradation Starch Roseburia intestinalis M50/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 3015.0267 2171.645 5819.3098 60895.5921 4430.2911 2283.5734 2283.5734 6950.6119 3698.6191 3811.0787 6168.1536 9834.703 5291.2489 3784.0959 5193.5907 387130091 sqr Sulfur Sulfide Oxidation NA Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 2364.2642 14130.6204 4165.7353 9589.3182 124188.8395 2823.721 2823.721 42666.197 4306.7455 2238.564 3714.6721 6652.2024 4693.5928 145251089 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 5273.5588 206686162 napa Nitrogen Dissimilatory N reduction NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 2284.1698 53899.9329 5699.0317 3775.1933 7997.6642 5756.2683 2791.8969 2797.2348 4738.0828 304313365 nosz Nitrogen Denitrification NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1998.6879 388008092 nitro Organic Remediation Others NA Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 3098.4178 2432.551 30793463 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus ehimensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4223.5543 11350.2126 3705.4103 3668.2231 2505.0515 2505.0515 7449.7094 4759.3177 2416.6377 2253.6247 302884643 nagg Organic Remediation Aromatics Aromatic carboxylic acid Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 4738.8283 4881.4175 9295.4008 5690.7736 198257632 cysJ Sulfur Reduction NA Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 2317.9825 2442.8827 3538.3331 3612.6322 5777.4464 5796.0123 6570.3896 4637.3892 5035.8997 2586.2776 3246.8561 2338.9872 156050149 cutinase Carbon Cycling Carbon degradation Cutin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8390.9781 1116939.0136 3947.0911 4954.7997 2649.9814 2649.9814 4601.356 3496.3471 3648.4693 6869.4871 3205.0838 4875.3988 3699.256 2831.7632 7035.9748 76058257 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4683.9685 3324.0489 59294.0854 4458.8161 6251.972 4737.9066 4993.8218 68573.5131 238797348 nfsb_2 Organic Remediation Aromatics Nitoaromatics Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 4956.3165 3045.9651 10055.2474 4662.6344 3047.1105 3047.1105 8855.0147 5378.6173 9926.6253 419599.0567 2805.3998 3912.8408 297616325 ppx Phosphorus Polyphosphate degradation NA Syntrophothermus lipocalidus DSM 12680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophothermus;species:Syntrophothermus lipocalidus; 5885.4214 3020.0674 3201.7747 92604.6774 5328.9501 4991.0143 4791.5882 2299.985 2299.985 3742.2955 14693.6757 5402.1894 3263.2999 7920.9185 2187.2976 7751.5944 5651.9272 4822.8953 3865.4113 2995.1959 3979.8503 6804.8055 372470971 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurimonas sp. GD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas gotlandica; 2155.2581 4009.806 88798010 urec Nitrogen Ammonification NA Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 13644.1938 8715.9104 6279.2956 5679.0093 2129.7244 3232.7206 15328.6868 209401684 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4798.9529 8355.5684 2413.5393 13706.4401 169151977 one_ring_12diox Organic Remediation Aromatics Other aromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 459777.2808 5193.5402 8140.167 6670.3275 369841051 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2287.188 4513.7251 3174.7569 3002.75 6441.0509 157382816 napa Nitrogen Dissimilatory N reduction NA Caminibacter profundus superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Caminibacter; 1837.6267 282897749 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 3202.4127 3830.5664 3041.5849 4165.567 1941.5591 1941.5591 13078.7472 5838.8172 11292.5634 3853.8736 1785.068 5362.2149 4549.3827 150954604 exochitinase Carbon Cycling Carbon degradation Chitin Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 2285.2732 2431.0658 6124.7744 7211.5344 5060.1156 114394.54 5848.1149 6015.6448 5079.7715 4377.6535 9561.3339 7465.7493 5008.5441 5801.9551 6447.6518 2485.6917 5677.8945 7834.1172 3259.2744 9372.3449 27066.9999 2680.7053 5240.797 4875.9319 3550.0658 9508.351 340555953 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus caldus SM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 5821.1826 2864.5511 7295.1233 19194.4454 4110.3334 7714.4099 3303.3368 1732.7384 153954223 amyA Carbon Cycling Carbon degradation Starch Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 2707.6632 2361.0151 99309.3466 3653.0695 6418.7933 4480.3519 7698.2559 4726.1411 2309.396 9850.3762 4831.2766 5737.1415 3794.8893 225870324 amyA Carbon Cycling Carbon degradation Starch Streptococcus equi subsp. equi 4047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 3592.0097 3318.3784 6211.2126 5174.6647 3842.7198 79863.1629 8374.2897 7497.8056 2432.947 2432.947 4026.295 7988.9928 5727.6538 5661.5039 6792.4785 3486.6281 4970.5292 7128.043 2082.4359 5812.9653 311294293 amoa Nitrogen Nitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 1754.0087 3558.2315 310791710 pec_Cdeg Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 3758.5645 71846159 tfdb Organic Remediation Aromatics Chlorinated aromatics Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 2449.6869 3455.0409 2371.5575 96602.657 3872.7935 2519.0262 7551.903 4820.4407 4342.6645 4234.3129 5165.6212 2345.4586 3033.4829 4860.7009 2294.4943 9448.1774 6178.2837 1949.3262 2754.7208 4192.7019 3223.733 7398.1786 190688498 cysJ Sulfur Reduction NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 4302.9301 2647.8175 6955.8967 4587.4705 43325.6861 343063.3102 19217.3719 19217.3719 5238.6199 8874.8352 4017.9706 5896.5007 4800.4151 4827.4658 8536.0364 12101.063 23148.909 46000.5975 10427.8022 13436.9547 10529.8973 12946.3206 7010.5439 5942.7698 163760080 TIM Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 2515.4773 2910.1355 3578.9678 5950.3272 4479.9715 2770.9027 5575.0633 2498.1817 5556.3451 13356.9778 6648.0459 2095.92 242217459 badh Organic Remediation Aromatics Other aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 31361.8691 4493.1807 85069142 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4612.5457 2091.3858 38960.5313 69874.109 18326.0576 2286.3127 2286.3127 2880.6544 7068.4901 6001.0638 3644.5133 6256.8552 8674.2733 2792.6024 3097.101 7229.441 11146.1009 4026.3143 7753.4776 2313.3478 3010.4078 5329.6766 4107.4899 7258.0003 66866193 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2072.4498 100024.9052 3956.057 11829.0645 4462.0055 403311954 nosz Nitrogen Denitrification NA Riemerella anatipestifer RA-CH-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Riemerella;species:Riemerella anatipestifer; 3454.5779 5835.9323 3602.9794 5262.4854 4161.2091 3183.7526 2850.8781 7266.3567 3740.344 5938.0117 4680.467 4405.4413 2491.7141 10307.3271 2356.8892 14402.9395 2477.8617 2706.3654 3225.8857 11356.21 300717935 ppx Phosphorus Polyphosphate degradation NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 2856.5762 134122725 pmoa Carbon Cycling Methane Methane oxidation Methylocaldum sp. T-025 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylocaldum; 4159.8726 64250.9732 297255702 endoglucanase Carbon Cycling Carbon degradation Cellulose Staphylothermus hellenicus DSM 12710 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Staphylothermus;species:Staphylothermus hellenicus; 2213.9723 5315.8225 239864964 gdh Nitrogen Ammonification NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 1975.4883 3303.4482 7184.0971 4081.7114 3814.0864 5718.6551 3420.7085 4495.9046 5722.7549 2225.213 8537.1876 6180.2052 3136.8432 291513759 pme Carbon Cycling Carbon degradation Pectin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 8779.8835 3357.8363 59256.4495 4580.6335 4638.1314 5272.3292 3088.2337 3303.6555 84509018 pcag Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 4790.6924 4978.3333 3241.0291 3253.2262 54314.927 2622.8914 83431.8559 4587.8181 5188.9532 2896.1771 2896.1771 4815.4453 12882.8154 12968.6683 11940.9432 9243.3087 4269.8022 5316.5386 7108.2697 4155.9938 15503.6748 5955.4648 10273.3517 2926.2648 5215.8162 4704.1015 3983.3608 6984.4759 372486625 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6158.1006 2444.0074 3297.7046 359353216 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphaerochaeta pleomorpha str. Grapes superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 4373.7458 3894.1295 355539814 PRI Carbon Cycling Carbon fixation Calvin cycle Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 2071.7796 5749.4429 4671.7189 6307.114 13815.4916 3653.8444 7066.568 16979.9677 16979.9677 14211.7319 4721.2238 15786.6939 3157.6254 27942.9437 3933.3091 22030.6588 5089.546 10164.45 12263.2598 8806.8899 8987.9432 2306.3256 209908018 tehb Metal Homeostasis Tellurium Detoxification Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 4112.289 3557.616 3600.3107 5213.7407 9004.2116 2950.5971 63097.3211 5815.413 2725.3787 8622.1515 4251.667 11509.6528 4649.7173 2740.4002 3238.8633 9190.4492 2774.4688 10436.8061 6923.8801 6621.6547 3408.9481 3912.311 3488.6177 2536.8265 5868.5209 56478490 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 2046.5301 2552.3052 7404.1672 6766.2301 183109.8782 11546.2191 12181.1838 10354.0151 10354.0151 3641.3107 8393.6536 6814.1521 3457.5986 7941.9791 4205.8711 13518.1964 10293.1256 6302.0171 3254.4345 4763.5709 5056.9365 5306.3546 374324669 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4793.0804 2835.7344 5035.6139 5875.8129 224026793 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 7260.4256 2826.0226 5923.0865 4869.8129 4257.7766 4734.1315 686774.0011 33286.5194 2839.5425 12205.8101 3932.6113 2634.9652 60360650 B_lactamase_A Virulence Antibiotic resistance Degradation Photobacterium damselae subsp. piscicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 5969.5129 344342077 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 24151.6942 4162.7487 2709.8211 4954.8833 4095.4863 3758.5007 5809.204 7750.846 9372.388 28291.5188 3848.866 2273.3484 17379.053 6793.8528 6653.7931 12734.5437 4760.8001 7143.9035 104863.4676 4913.8539 3495.435 5439.3955 6491.5691 388565744 tfda Organic Remediation Aromatics Chlorinated aromatics Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 3324.771 4055.512 94470925 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2192.3569 5599.3777 5733.381 3220.5389 334696837 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 2465.5494 3368.5851 33202.828 7385.0636 242131689 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 2810.6278 6414.2839 33636.3401 4461.691 1994.6016 3284.4856 2417.1463 81076889 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2928.0878 29160339 exoglucanase Carbon Cycling Carbon degradation Cellulose Botryosphaeria rhodina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Botryosphaeria; 3672.3044 2666.79 2212.9758 6899.0046 8301.2571 5205.4638 7709.1249 3384.0031 3817.3608 3817.3608 3144.5789 6434.2756 4559.2625 4526.0903 5253.2049 3888.3291 2502.5086 3948.5657 5475.4501 3007.7163 18389.9448 6539.9258 2325.9909 5291.8336 2947.014 3954.56 6878.1025 227438049 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4213.9352 148634.1586 7436.2876 4736.0756 3619.6308 7022.457 14253.2864 4421.407 5903.8553 5406.9714 325293721 xylanase Carbon Cycling Carbon degradation Hemicellulose Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 2489.2434 26433.9169 3419.72 7372.3744 3594.5493 4116.1379 2417.0039 2417.0039 6317.6978 3897.1662 2046.5721 9223.2976 5303.0259 17328.5624 18337.8483 4012.4063 7030.1657 2594.3545 7886.9173 4583.6368 299060366 poba Organic Remediation Aromatics Aromatic carboxylic acid Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 3127.2536 4311.3618 59284.7426 4192.2262 2860.5712 12589.0691 7115.8721 5557.2211 8598.2632 145319743 cysI Sulfur Other NA Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 3574.7952 8869.8067 5063.6998 2166.4829 2166.4829 16295.2933 4189.8582 38847.2843 3351.2667 161579035 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 5468.6844 4244.6691 8059.5233 4146.0639 3396.366 3396.366 17022.8291 8122.2631 3316.9328 3477.8636 7456.5515 353202520 arsc Metal Homeostasis Arsenic Detoxification Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 6256.2534 7648.5786 4364.9975 2231.8878 2436.015 5484.9984 1992.4232 3450.2076 5018.5335 2530.0462 5185.1709 117990892 catechol Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 31782.0587 9041.4679 12644.6048 8347.4326 4061.0319 75408.2122 2414.3706 4989.5304 11064.698 347365553 nirk Nitrogen Denitrification NA Citrobacter sp. A7(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 6854.6364 2464.6339 2403.65 2812.6448 20890.403 152226.1985 3814.083 6158.8777 6158.8777 6088.3504 5315.1809 4047.5904 5021.389 4315.6601 5210.6899 2320.4703 7061.2771 2819.614 14418.1168 5064.7443 5398.0398 3242.4745 3333.6529 5786.376 3141.0032 6003.1252 113902067 terc Metal Homeostasis Tellurium Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 6047.1404 3076.6926 2848.035 6200.7387 3955.7734 2863.9955 47420448 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. MG3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3019.7425 3424.59 2407.9228 2407.9228 2746.643 2266.4021 21217679 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2720.6197 4044.4361 73383.363 17101.4062 4144.2794 5052.1936 2961.1212 2163.5759 8473.0784 7521.8458 1798.0734 10752.1353 73250.1597 336100295 tktA Carbon Cycling Carbon fixation Calvin cycle Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 2896.0947 4384.6851 2781.0291 3605.8606 3553.9484 2187.3247 2187.3247 8892.8096 4682.5103 3476.095 5414.2392 3824.0986 11284.5112 3077.897 23822.063 5684.8801 6117.1711 9673.6612 3793.3757 2978.819 158112966 vgb Virulence Antibiotic resistance Degradation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 127588.3158 4169.9203 3114.7389 3658.8669 5017.4153 260774839 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 3458.325 4228.3968 554622.824 2547.3074 68436.1387 5081.6471 9354.0647 3884.4406 6387.3747 12929.7371 7819.9359 2570.4909 10096.6122 6466.3449 68480.67 2540.111 4482.5035 4386.4424 2413.7501 227511610 B_lactamase_A Virulence Antibiotic resistance Degradation Lactobacillus buchneri ATCC 11577 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 4855.8139 3580.6738 6072.24 2061.5591 7411.7445 2183.9628 5163.0542 375109839 amyA Carbon Cycling Carbon degradation Starch Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 10277.5135 11052.0351 3123.3857 3993.509 13124.7747 6705.8455 4607.3579 4783.0603 7103.9321 4076.7844 9381.8001 5735.5471 2392.6546 19332.6337 3394.7521 35478.1416 343506559 arsc Metal Homeostasis Arsenic Detoxification Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 8923.1246 2746.514 2746.514 314981410 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL110PA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 2842.2373 3311.7116 5922.9538 3490.9743 5379.4551 3832.8759 26057.7565 3633.4517 4662.4908 6237.5084 298541547 pgk Carbon Cycling Carbon fixation Calvin cycle Bartonella quintana superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella; 6828.9181 2066.5494 4679.863 19560.1288 6129.66 12885.0269 10857.4321 5114.532 2483.4192 9403.5208 5615.7029 2525.5162 7482.48 174898.5328 2768.7015 366166005 mannanase Carbon Cycling Carbon degradation Hemicellulose Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 2411.3769 2233.0068 2360.5836 3785.7028 140588.778 3946.75 12411.6219 2874.8911 7883.9706 5207.0064 6514.9117 7050.1393 7944.905 2593.721 7884.3625 2194.3178 11114.9041 6153.6835 7295.6824 3200.0483 3241.3706 4487.1736 2758.9237 5360.2953 254785597 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 2334.8783 2605.2223 3334.1444 5093.2592 6171.5816 3836.6524 3941.2126 2969.7533 3860.9822 2135.735 212538341 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 3240.7385 10477.7848 67120.9318 8078.3819 3939.5382 4189.0457 8312.2199 2320.9513 55617.1337 4028020 dsra Sulfur sulfite reduction NA Desulfotomaculum thermocisternum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 9856.1327 1872.4185 1929.531 114192500 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 4948.559 4884.0319 9977.5307 7768.3418 9568.2852 6498.9182 1957.3925 2560.9768 149939127 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4113.0696 3703.0383 2758.648 8158.4892 5353.0887 2583.6228 3968.7836 4553.3358 216417 glucoamylase Carbon Cycling Carbon degradation Starch Clostridium sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 2843.3266 210611105 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 2572.9819 58489.7873 3757.4631 2148.9083 4811.8035 78060158 catb Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6568.1475 50428.5387 13126.7083 50084866 pcag Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2817.008 3242.8109 2784.1367 5850.0627 3205.9874 7264.7169 10808.9486 4139.1064 4139.1064 4364.2588 11665.2158 4397.4195 7199.4767 3086.4726 37539.8011 6634.6393 23747.2725 4967.7893 3814.3764 3322.0223 3053.0001 302692112 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3349.7394 11311.3897 123968175 amyA Carbon Cycling Carbon degradation Starch Prochlorococcus marinus str. AS9601 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 4197.2146 3262.9341 5712.2071 3407.0129 3409.589 4058.3747 2332.7152 2391.374 262315151 tehb Metal Homeostasis Tellurium Detoxification Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 3185.8111 2235.8873 3563.4311 5230.2081 3901.1773 3853.3352 3154.2343 8194.7142 5748.7864 6610.6619 5593.7264 9931.3974 2522.5867 2570.6319 5999.9412 3276.4461 9720.1691 3502.273 5476.6947 3607.3104 2874.9913 4499.4485 2707.8651 5437.8702 21673682 dsra Sulfur sulfite reduction NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 1801.6517 2718.4328 2123.645 57011.7604 3496.7311 4399.9176 6228.5046 2659.0716 10888.6606 2548.2727 8693.7425 5502.9255 3007.7379 2963.5777 2931.6285 7140.0107 71012500 lactase_fungi Carbon Cycling Carbon degradation Lactose Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 5797.1124 3092.6738 2745.3055 2745.3055 20926.374 16297.4663 5179.4036 6544.6627 15600.2923 3675.6931 8511.7434 4364.362 9227.3339 2136.5625 3091.4619 4703.0435 300724654 cysJ Sulfur Reduction NA Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 2457.8299 5686.4733 48527124 mcra Carbon Cycling Methane Methanogenesis uncultured Methanosarcinales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales; 2338.4509 4034.9465 2544.2946 288337318 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 4805.1045 3206.4906 6871.5358 7175.8542 3455.6702 114286.4252 4747.6916 6895.0512 3331.1241 3331.1241 4396.2121 8669.4919 5196.3864 7182.2925 6685.0319 8209.0608 4389.7061 4019.3809 11068.9441 2459.2318 11751.2785 4439.2598 8197.1038 2607.7173 5229.5575 5752.3197 4364.1766 6841.6 340775544 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 2720.9991 3254.1021 69109.0274 5060.5262 4388.7035 3955.2039 3825.8164 3966.9752 2587.3366 2941.44 2177.5591 4318.5089 46307954 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3877.5173 66627.8203 5976.0543 5200.7245 23295.633 4536.5765 10293.6532 8237.7328 3181.805 2767.6571 3162.1401 2106.7406 308178082 inulinase Carbon Cycling Carbon degradation Inulin Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 3006.809 2818.7544 2084.51 3306.3361 4476.9129 88403.4493 4556.6213 4628.2576 3587.4839 14879.7423 5325.0029 3138.2828 7276.3219 2505.5618 8632.8451 4267.6556 7780.5614 2197.035 4263.6652 157736619 napa Nitrogen Dissimilatory N reduction NA Arcobacter butzleri RM4018 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Arcobacter;species:Arcobacter butzleri; 3481.4092 8040.821 52269.1348 52269.1348 3059.7747 26963.4843 23220.7939 4350.4645 23291.2091 383337051 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 4096.6345 3412.4932 3028.3935 3776.0409 86468.5136 7904.851 3846.4216 3457.7332 3457.7332 3567.9449 5138.2028 6244.2971 6824.4682 7448.3356 4027.4338 9741.7536 2801.9694 7781.5636 8135.7501 7572.3102 2458.211 7842.854 4889.1467 3485.1757 18444.5949 259417017 urec Nitrogen Ammonification NA Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 2955.0364 50282.6408 4209.7066 8370.4953 89353.9865 4337.149 7337.0191 4253.8135 7152.4924 2931.1151 8036.8963 6041.2746 4761.4542 3353.629 4422.0918 7146.2684 319927166 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 2685.5687 2245.7334 3264.405 3359.3544 7557.3005 4923.2867 5521.483 2863.5554 7114.1158 3753.1585 6235.2997 1861.5785 2890.9561 2545.5346 7706.805 302420777 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 4279.7447 3858.191 4116.8737 2335.6204 1827.4287 2922.973 281484894 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1809.4789 170810 cellobiase Carbon Cycling Carbon degradation Cellulose Saccharomycopsis fibuligera superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycopsidaceae;genus:Saccharomycopsis; 3861.7893 4740.4359 4147.1429 2747.2626 6876.5818 3340.5838 4522.5388 4522.5388 7684.7558 4435.1404 5170.2524 2089.9469 2645.6574 2572.2356 21270.5807 6545.7639 3272.4987 4719.3706 5919.0742 145553602 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2001.9249 4121.9062 234950.6341 11330.5264 3752.7239 263677.4248 8717.9666 2986.7149 147670.0742 2404.6298 198270995 amyA Carbon Cycling Carbon degradation Starch Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 2275.7682 2619.2134 4689.4945 4454.2589 3687.6826 4975.5006 5725.6963 2864.2979 10568.2076 6100.008 3106.9411 4244.0998 3367.67 6217.5792 344203932 cysJ Sulfur Reduction NA Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 2272.922 3643.2867 2859.1682 4682.0938 6550.385 3308.6961 96175.5273 4076.0203 2102.0972 2102.0972 2815.1776 10040.0933 4357.2609 4071.11 5542.6462 3815.3155 2503.9531 10015.5328 5738.2177 2004.0649 3077.0314 4486.5558 99036646 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4741.0011 115401256 nitrate_reductase Nitrogen N Assimilation NA Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3210.6825 2374.7054 3731.0263 51816.9958 3945.646 5011.5104 3405.1939 3906.4079 3727.2744 2200.8959 2023.9446 4706.7896 3283.5225 2149.4189 261879133 amyA Carbon Cycling Carbon degradation Starch Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 3812.6024 9148.4173 3265.539 3655.7294 6938.3176 2930.1739 2615.8018 7010.1664 2376.258 4372.1754 5943.5167 2020.6635 2557.2729 2169.586 6000.8499 219939171 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12278.8569 26000.9068 14064.3599 21363.426 27008.8786 282858686 amyA Carbon Cycling Carbon degradation Starch Prevotella bivia JCVIHMP010 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bivia; 2451.5548 89512766 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2706.7176 3428.1899 5141.2464 5698.048 3828.257 4664.163 1946.1222 198252667 nhh Organic Remediation Aromatics Nitoaromatics Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 3629.1309 333738230 cellobiase Carbon Cycling Carbon degradation Cellulose Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 3827.945 63112.7948 126593576 ppx Phosphorus Polyphosphate degradation NA Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2270.1952 15790271 atza Organic Remediation Herbicides related compound NA Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 2037.2153 250307.9588 3138.6889 73826.0293 3716.3014 129684.5453 2104.0072 2104.0072 223877.1511 24251.1875 3020.1687 4655.7044 90332973 urec Nitrogen Ammonification NA marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9445.6443 3945.5636 3336.9208 5657.4065 2777.2155 23867.9364 9488.4789 8097.8324 5509.4713 239910210 amyA Carbon Cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 2122.3096 61063.2255 3836.1904 10259.3191 4883.6118 6027.3927 4163.8891 2346.5956 6777.8595 6276.2551 11705.5726 4026.9866 6476.9907 2953.765 3544.5655 3368.1301 2886.6773 5240.7057 353677169 terc Metal Homeostasis Tellurium Detoxification Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 2823.9737 3029.4293 4279.308 6373.4242 2358.951 2358.951 6164.4449 9059.0514 11828.803 4144.6976 5832.6693 3889.8623 158334948 rubisco Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 2072.5057 13812.1886 6420.8814 7573.5394 4014.135 5761.6159 90954595 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2873.5589 5702.0813 3258.4507 7358.292 4372.4081 4372.4081 3531.7008 6988.6155 2562.5483 4087.3736 3652.0551 5003.3312 5729.7352 338973669 SoxB Sulfur Sulfur Oxidation NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 2667.4298 8222.4113 70093.5838 3323.2818 5537.8628 52358.47 5523.3324 5601.4911 4457.7695 4457.7695 20545.8931 3714.1549 8863.652 16151.3367 2678.1241 3653.3769 2705.586 10262.7426 5741.487 10062.7571 2569.5868 8096.2392 3274.6274 9794.1286 5646.1038 60476030 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 1948.9342 11875.897 3995.9262 2119.0443 308097617 phenol_oxidase Carbon Cycling Carbon degradation Lignin Peniophora sp. 3 ZY-2010 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Peniophoraceae;genus:Peniophora; 2702.416 4784.9627 4783.1041 2604.0653 6240.1208 1783.5972 3129.7512 7078.4593 125601752 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 9384.6163 3592.1881 2899.5943 6755.279 7527.2837 9063.3141 47879.8176 118434457 hbh Organic Remediation Aromatics BTEX and related aromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 2468.9235 2397.8465 3804.1335 4194.4533 65478.5259 5580.4617 2827.7139 9729.424 4105.6951 23976.1821 4912.8063 2559.5364 2308.8344 5823.619 2318.9453 10901.9398 4733.8494 2373.7637 4141.4785 5422.4351 2643.5979 8528.0981 388003636 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Q8r1-96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1909.503 7230.8684 302395331 endoglucanase Carbon Cycling Carbon degradation Cellulose Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 2894.4233 2665.5114 2665.5114 5690.1802 4372.3586 5133.1477 28809091 terc Metal Homeostasis Tellurium Detoxification Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 1703.0243 15390.0596 227197854 amyA Carbon Cycling Carbon degradation Starch Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 4313.3102 2773.2239 5081.9933 5953.4612 9298.0081 4426.2688 5941.968 5654.3425 3596.2695 6038.987 3035.9303 11554.0037 4359.9505 5849.8825 2146.1732 3777.9758 3956.4882 3454.6891 50084588 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2373.0557 3167.7702 65557.6691 7322.9407 5080.3462 4786.6115 4239.642 4195.9461 6614.2376 2706.4045 3439.7787 3294.8998 2699.2945 5551.5233 76164562 phn Organic Remediation Herbicides related compound NA Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 545497.8776 3327.7511 13366.1068 2548.8028 2548.8028 15049.1936 17933474 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4114.1528 5333.5977 4498.5447 78265.6524 3768.4317 10743.555 2398.7398 2398.7398 3069.612 15973.7147 3645.8526 7797.2208 5589.3077 2331.2244 2377.9788 6870.4857 2797.1196 3128.6278 3905.121 3940.2996 9814.6962 5232.8964 336439447 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium 1_1_57FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 2531.9841 218714076 lactase_fungi Carbon Cycling Carbon degradation Lactose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3371.983 4426.0701 2465.8689 5002.7602 5251.6006 1743.0234 3033.0095 4771.398 390167570 terc Metal Homeostasis Tellurium Detoxification Sphingobium indicum B90A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium indicum; 3497.9797 44653.9872 2774.4591 8269.0192 4167.6166 6427.7934 4582.4669 302894193 protease_serine_fungi Carbon Cycling Carbon degradation protein Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4676.7809 6648.4334 334732516 tktA Carbon Cycling Carbon fixation Calvin cycle Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 1810.0518 3262.2107 332969057 alkb Organic Remediation Other Hydrocarbons NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 4782.2353 3532.8801 9133.2352 3643998 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3529.6499 4764.6548 3842.9538 2161.8827 2831.2084 3273.545 88804901 amyA Carbon Cycling Carbon degradation Starch Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 4835.2717 3493.7681 3563.9511 3055.8972 7148.5665 4269.5467 5685.8313 8871.8462 1822.0306 3802.7874 3018.8427 1877044 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus tubingensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3222.1899 5328.6035 4846.3159 2489.0631 257059519 Sir Sulfur sulfite reduction NA Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2255.0415 2967.8849 13003.8901 388062591 ppx Phosphorus Polyphosphate degradation NA Gardnerella vaginalis 00703Dmash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 2513.4467 6058.9216 6058.9216 3905.9113 323472633 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2478.2939 2593.8405 2049.5176 3377.1524 52892.6067 4308.7367 5292.356 2823.5121 9076.8241 4038.6273 4233.9032 5814.1248 5815.5759 2424.162 2412.6277 6960.688 2919.6925 9314.3904 5200.3946 2878.6268 2658.713 3746.1767 2036.7994 8464.5942 83309318 cellobiase Carbon Cycling Carbon degradation Cellulose Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 3525.466 8129.2926 3817.0551 331022693 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 2824.7923 3045.1061 4853.4226 7106.1896 7494.9286 7494.9286 3945.5681 5900.1155 3787.5732 1901.9666 197286547 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 2616.4751 2730.0931 84361373 mer Metal Homeostasis Mercury Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 13614.1944 2538.7271 11816.3716 2380.0758 580619.9087 2252.8881 2252.8881 3455.9522 29225.3037 16696.703 2308.8174 6730.2007 8883.4094 384075834 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 3052.0285 2640.7265 10940.1147 3711.3926 315250961 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 3902.7952 87284615 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4403.1127 3516.9672 58888.0358 2090.2913 2090.2913 6377.3381 3744.7448 5320.1679 2964.0778 333902522 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fulva 12-X superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fulva; 2387.5767 3763.9062 359768372 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 3018.666 10670.1255 5106.6842 3550.3232 9455.6685 93546.3717 9015.2989 134052.1849 134052.1849 7016.4527 4742.657 8216.1487 21609.7205 70716.0467 8235.7463 5979.5043 3352.6342 11267.6037 7039.0484 14703.4097 1948.0243 9883.4828 12277.8686 7891.8988 168705159 amyA Carbon Cycling Carbon degradation Starch Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 5628.9064 56983.0318 9472.3197 3880.6658 3880.6658 9727.3389 3886.0507 91202276 hao Nitrogen Nitrification NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 2199.2381 3395.481 82558.8748 3962.8115 3378.7771 4117.8468 8783.4725 4645.6334 3438.0783 7909.4405 5977.0054 2446.8983 6424.7202 8989.1377 8157.4901 1911.7087 3194.7976 4152.9332 2284.2114 6197.2013 379990435 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3928.5579 3085.8991 3603.8054 3677.8323 4265.6907 4170.196 4170.196 2761.0223 4282.4389 8071.3291 2448.6606 2524.0217 9820.877 5676.3046 2790.4085 3592.0578 3278.479 2280.1883 384101807 xylc Organic Remediation Aromatics BTEX and related aromatics Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 2045.7976 3825.5082 74223.9601 3990.1995 4609.9397 6595.7687 7885.3234 4459.0608 5106.5039 1736.4799 2747.3304 3493.611 5562.6756 315251878 gdh Nitrogen Ammonification NA Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 6309.1115 10134.2462 2430.1763 11548.3371 18803.4212 6031.3954 6031.3954 6236.7002 10073.8603 8257.1724 3521.4638 4306.2738 9027.8104 296426529 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11473.5733 386405065 amyA Carbon Cycling Carbon degradation Starch planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 1685.1675 14582402 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. KCTC8848P superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3635.0509 217989774 pme Carbon Cycling Carbon degradation Pectin Bacteroides] pectinophilus ATCC 43243 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:[Bacteroides] pectinophilus; 4349.3805 3229.383 3503.3365 4150.9079 3283.4561 4332.0338 5388.7578 3439.7086 8660.3993 2498.7583 83631154 amyA Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 3395.4331 3296.1471 4064.4203 2790.8331 374922717 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2614.5659 4196.1131 3888.5466 8861.0927 9890.1043 84408.6903 11579.5585 8120.9036 9556.0465 2315.7676 2315.7676 8143.9728 10707.7335 7472.7216 11495.0436 4938.1593 3940.0685 3332.1824 9617.5192 16701.4113 8657.4535 11148.3617 4950.8477 8100.0473 2764.7975 198265053 mer Metal Homeostasis Mercury Detoxification Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 2654.5891 2766.94 3898.1973 2522.789 70044.2791 8813.9321 11166.8863 4630.5939 10817.0222 5429.2627 5333.5178 3903.6744 2885.0952 8233.4398 4780.6623 1905.5083 3923.0218 2753.993 193083759 cysJ Sulfur Reduction NA uncultured marine group II euryarchaeote SAT1000-15-B12 superkingdom:Archaea;phylum:Euryarchaeota; 5425.5208 242801063 phytase Phosphorus Phytic acid hydrolysis NA Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3769.8057 3526.161 4035.6172 5256.4341 3767.3316 5488.9409 1836.0997 2427.736 126654451 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2165.6758 3394.8132 239833415 tktA Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 4489.2322 3217.4592 3601.7509 4895.8409 13584.8971 17166.8404 85120.0095 55876.6179 14710.9176 14710.9176 8976.2099 4613.5123 27796.8035 11167.8871 2443.5681 10578.2354 12807.9236 3748.5144 8222.0644 6324.3466 25816.4791 6832.0385 5202.9175 4723.8482 8287.5935 197786138 nhh Organic Remediation Aromatics Nitoaromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 3235.2845 3676.8637 3619.2336 6244.9682 3068.134 62391903 pcpe Organic Remediation Herbicides related compound NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 5708.895 4823.1874 6747.4435 4239.0876 3661.5369 9269.8171 5507.4489 6729.7969 2874.2465 5481.276 3101.5853 5326.1131 5438.6536 3376.382 2922.298 3630.3963 2788.8918 5550.0548 358012255 FBPase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 12170.9589 3068.446 2313.6573 3638.8736 8055.811 5110.9937 4836.9894 2240.1871 2240.1871 2972.6875 7106.161 6732.1071 2492.342 3199.955 10618.3447 5139.9953 6702.1852 2385.4646 4243.9391 3713.505 7451.7272 358382167 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 2495.5427 2011.7697 192764308 nifh Nitrogen Nitrogen fixation NA uncultured prokaryote 2488.3922 4391.4649 3970.1124 6549.7119 3336.5821 5081.6784 3245.0407 6346.8388 2222.1306 2567.0766 1898.1566 3043.9292 3203.5145 6194.4506 167354895 nitrilase Organic Remediation Aromatics Other aromatics Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 2433.1886 39944266 Sir Sulfur sulfite reduction NA Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2073.1434 10527.2232 7330.567 10877.1754 4910.5408 25209.8107 5151.4761 4553.9353 8871.3337 157011602 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 44931.5302 21839.86 109455313 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 2218.5995 347815182 tehb Metal Homeostasis Tellurium Detoxification Aggregatibacter aphrophilus ATCC 33389 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 8642.0152 4912.6109 4254.6629 7847.3368 52042.5946 3852.2609 2314.7064 2314.7064 9035.9713 5973.8753 8468.4274 7322.7663 3311.2834 4247.6465 5141.5457 3407.7342 8768.6182 9087.8919 6813.8196 6518.2985 4343.2849 2009.7045 13452.1078 70725655 narg Nitrogen Denitrification NA Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 1972.7383 60008.0501 5799.8665 3496.0784 4728.9842 5573.6159 4898.7132 10142.6568 4364.4657 2011.9501 2979.6969 3218.2455 291197034 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3825.9257 26724.8664 22117.0638 2246.9562 2246.9562 26218.3725 15676.2219 3533.1974 34811.1267 374619688 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 57746.2187 18196.4735 3649.3231 5727.3283 3702.2686 2730.5909 2730.5909 3406.3905 9969.418 7061.9543 7768.7088 5583.9549 3105.1801 7445.102 4492.9336 5556.2675 7120.5459 4226.4122 4463.386 3958.1316 138344.7135 10115.5849 126740002 PRI Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4049.5666 2882.6996 1964.7785 4510.3522 3951.3634 61426.4625 5959.3274 6550.6576 7365.1314 7365.1314 4565.5138 9701.4203 9877.7313 4847.2489 11995.3781 4526.2424 3448.7215 4433.053 10120.6258 2804.5203 16388.1559 7927.2122 10519.0992 2973.1693 13117.4213 7517.0609 2486.9744 7144.3456 62549367 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3411.944 1950.4736 1950.4736 2680.1506 2309.4591 116013318 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2259.1791 399909224 dehh109 Organic Remediation Chlorinated solvents NA Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 2528.2797 126575748 linc Organic Remediation Pesticides related compound NA Algoriphagus sp. PR1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Algoriphagus; 4316.0724 4990.8015 26290.141 3483.9506 21408.9036 5399.7958 6691.6619 10921.4044 2888.4885 22367.9747 5485.5913 1841.8973 7852.2672 146402065 mmox Carbon Cycling Methane Methane oxidation Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 2649.1337 3445.4139 3693.4944 2716.2628 16468.716 4121.2134 6999.571 4869.3583 156566885 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Ignicoccus hospitalis KIN4/I superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 4082.4611 56178223 phytase Phosphorus Phytic acid hydrolysis NA Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 3298.36 4285.8704 254042754 FBPase Carbon Cycling Carbon fixation Calvin cycle Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 3938.3112 2924.2913 5073.8808 6731.9318 10552.8641 116197198 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 9063.8133 8238.1821 2807.3954 5632.8646 4298.0581 2652.6836 11511.1306 4788.0028 13204.4466 2516.0041 7104.0309 2257.5814 8571.2845 5929.235 7297.6096 2135.1678 3268.3471 7748.9014 3169.7768 29652558 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3521.6748 3662.2282 2185.4846 4482.243 1719.4207 110633217 dehh109 Organic Remediation Chlorinated solvents NA Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 3310.2029 1703.1509 224462910 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylophaga thiooxydans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 3084.5205 3741.1804 4115.2752 3140.9585 59024.7325 11741.6467 38050.7414 6748.8518 3993.6572 4911.085 16379.6347 5635.6344 4646.2097 2494.6956 4581.7449 10129.5826 18269.3673 7589.7458 325916815 poba Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 4379.9278 2520.2397 18386.8348 32445083 gdh Nitrogen Ammonification NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 1865.9177 2368.2612 2368.2612 8533.1558 386377569 fosa Virulence Antibiotic resistance Degradation Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 3696.3816 4524.6489 3304.7451 3699.2962 5885.7156 7255.3848 254431766 rd Organic Remediation Chlorinated solvents NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 2303.0007 3548.9988 4522.8578 2470.9103 2470.9103 7482.1808 3824.3173 3147.4629 7585.2954 7616.3885 11483.5236 3110.3038 2860.482 7488.589 355366823 pula Carbon Cycling Carbon degradation Starch Streptococcus intermedius F0395 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus intermedius; 1967.0182 4917.8368 4699.3153 2993.3848 3576.7432 392409167 rd Organic Remediation Chlorinated solvents NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 3252.0548 6276.6375 4503.7631 260605956 amyA Carbon Cycling Carbon degradation Starch Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 3515.4968 2508.9197 2665.2701 4810.5128 67798.214 20170.8012 14754.8622 14754.8622 7789.4088 5598.8614 7309.432 6318.4796 7046.2809 3039.1566 10266.3163 9182.5115 2594.8562 33428.7711 5125.2093 2108.7011 6244.6134 111072010 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11651.7322 2429.5936 2429.5936 392845141 phn Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3005.4347 4337.8235 106225.9164 5094.1701 47385.0696 4020.427 3309.231 5446.0903 2074.1684 4907.6957 4360.7826 90438395 chitinase Carbon Cycling Carbon degradation Chitin Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 7890.3888 5324.132 3045.064 3045.064 5141.0822 6278.6795 5024.6684 2451.6507 4226.8481 218047576 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 1963.97 164914.1309 6596.4878 7290.6129 262089466 nirk Nitrogen Denitrification NA uncultured crenarchaeote superkingdom:Archaea;phylum:Crenarchaeota; 2126.2556 198033775 aps_apra Sulfur adenylylsulfate reductase NA endosymbiont of Oligobrachia haakonmosbiensis superkingdom:Bacteria; 4070.6157 3226.7712 8128.9871 2182.6634 2148.2599 9286.3579 164455558 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 1863.9269 5581.4025 289450583 xyla Carbon Cycling Carbon degradation Hemicellulose Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 2037.6898 12005.2607 4015.6592 3866.0368 325201706 nirk Nitrogen Denitrification NA Neisseria meningitidis M01-240149 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 9359.8544 8267.6463 3455.9663 3455.9663 359400790 phdci Organic Remediation Aromatics Polycyclic aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 2158.2571 3861.0958 2328.3928 9722.9229 6436.7952 4633.6502 14909.4138 5047.9324 3606.2745 3606.2745 7513.3767 5334.572 3944.401 2917.1888 6550.6328 8321.6612 3350.7406 7098.5329 4207.1634 3157690 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 2198.0146 2758.2333 69142.1243 4361.2028 3728.2915 3728.2915 4081.9791 2808.6137 353199520 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4151.8173 3011.324 19003.534 2676.0236 8307.6066 1909.4422 1909.4422 9332.3929 6869.3914 5343.4222 4643.1269 3663.4032 3190.4386 6956.8709 2664.5063 13203.3376 4344.299 5865.0226 3652.5777 3849.7813 6476.832 110648432 ppk Phosphorus Polyphosphate synthesis NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 2015.8109 5346.5755 5824146 alkh Organic Remediation Other Hydrocarbons NA Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2079.2494 7299.5099 63003125 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 4977.7 2967.5937 3152.1962 6329.0111 3807.5471 9495.8025 6690.0877 6690.0877 3288.6755 78904.5361 6415.5401 7936.949 7389.9364 6654.5303 11658.3971 212672825 dsra Sulfur sulfite reduction NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 59736.4607 6421.1756 4808.0699 2711.6453 256913.2896 2989.6536 2989.6536 6220.3643 3630.0019 3812.9928 7676.3556 6141.2036 2926.7436 5493.2651 19533.0559 10345.5676 12697.6549 5122.731 2085.6337 11625.4315 4844.2117 1896.8601 4836215 amyA Carbon Cycling Carbon degradation Starch Fervidobacterium pennivorans DSM 9078 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium;species:Fervidobacterium pennivorans; 2785.3715 73865.4033 4025.011 4194.371 4033.3013 4074.4516 2365.8678 9140.386 5537.7159 56678347 FBPase Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 7805.0748 2460.6245 90251.716 2699.8931 2699.8931 6593.1291 3944.8421 4140.6162 6691.4733 9551.0263 5685.7422 6508.3321 2234.9631 3611.9021 4052.3078 2009.8824 4563.6818 259022052 urec Nitrogen Ammonification NA Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 5156.5602 3848.8075 4678.0032 4678.0032 7216.2577 3545.4139 6534.3172 5484.0121 2066.5022 2976.0751 325483131 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola CRIS 18C-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 3163.4443 4382.4305 3509.9303 5806.6249 7172.5412 83242.5854 3474.6481 2765.3153 2765.3153 6727.2433 4697.2834 4862.7474 7463.5454 2900.5905 6996.5515 3428.8898 6927.4187 1802.5809 4588.8308 4147.1885 336126085 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 2102.1269 333479381 ppx Phosphorus Polyphosphate degradation NA Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 1718.3048 3956.711 594605.9506 2289.6144 10909.0741 1679.7355 3220.8268 194565820 arsc Metal Homeostasis Arsenic Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 12338.0996 5265.4478 5265.4478 687032.2761 257808455 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterococcus casseliflavus EC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 2259.9623 3468.7018 3205.4127 13346881 mannanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 5458.1381 3650.6002 3883.6325 7621.5992 3634.7551 3362.9264 4826.4444 3794.7859 9472.1519 3816.2919 78188110 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 2602.6045 2116.8601 3876.0422 10164.67 2254.8177 378747736 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 2138.4615 4433.0076 2171.0533 2171.0533 3962.9827 47156902 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Antonospora locustae superkingdom:Eukaryota;kingdom:Fungi;phylum:Microsporidia;genus:Antonospora; 2857.2717 85473.4165 62195.0736 8593.4458 8004.2228 7404.7727 6642.7985 148474700 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 1896.6905 2227.0448 1907.8622 3404.182 4570.3881 2466.1611 81172.5275 3537.3793 8958.1948 5613.1508 28508.8218 4295.3048 3198.2315 5821.5068 1990.1692 8390.054 4711.0794 7777.2876 2106.6393 3501.4106 4128.281 3150.3662 6193.6497 94470913 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3834.3279 2049.0995 5327.8288 2708.5101 75672.8168 3624.07 3754.9594 2758.2234 2758.2234 3626.0606 5917.3822 8013.1269 4872.724 7480.3837 5327.8778 2842.5558 2494.6582 7442.03 2694.273 4319.5822 7048.8614 1952.1592 2760.8394 3480.268 2826.2353 6943.6548 77971987 terc Metal Homeostasis Tellurium Detoxification Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 3806.6504 169623074 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 2252.7408 3053.5964 10206.1975 6723.5916 393773710 tfth Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 2319.7904 4172.4841 4459.767 7028.4271 9568.8975 164455522 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2436.6437 2656.443 3928.0209 399059421 tfda Organic Remediation Aromatics Chlorinated aromatics Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5906.941 9823.8797 158316922 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4631.196 2483.5185 3832.9091 7914.8552 7914.8552 14876.3773 3892.2035 4626.2023 68987.7512 4985.9339 4384.5006 3177.3898 17101.0993 7159.8155 4149.8916 392965298 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 3220.9442 31822.2932 19111.506 223587049 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3302.5182 1926.5099 11649.8432 11649.8432 19421.5704 11907.1534 2577.956 365748522 pme Carbon Cycling Carbon degradation Pectin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 2484.4656 9186.6999 4942.883 269104311 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 5351.3008 112464095 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2623.9922 2686.1621 3007.6343 37593.5129 4836.3546 7663.0046 3934.8517 14158.0712 2025.9042 292816397 b_lactamase Virulence Antibiotic resistance Degradation Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 2104.9181 5778.7671 3540.495 288351876 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4633.6347 2114.2426 4698.8299 6453.9691 5028.2078 6502.3426 5546.9947 2769.3891 112463437 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2884.2966 355336228 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 4559.1139 4165.3099 108389.9044 5589.3957 2350.3173 2350.3173 3971.9812 4182.3596 1889.2728 10696.4755 3855.3343 309249550 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3479.4913 94471107 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4115.8996 4053.802 37780.3801 5699.4229 156566372 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Ignicoccus hospitalis KIN4/I superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 14462.307 7320.7175 3511.3164 4565.9362 15001.2907 2068.0315 9606.2868 8363.4195 6545.4993 76058168 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4159.7359 4204.6234 4947.2055 2189.6859 1895.8965 3035.3966 1255498 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 3148.5647 4366.3025 9647.2759 3957.1798 1962.7171 1962.7171 6914.1724 3482.9207 4068.0414 12089.7436 32976.6194 2160.066 2662.4351 7850.6622 2308.3801 10841.7309 6374.9246 5070.234 3966.5952 2256.948 261345738 arylest Organic Remediation Aromatics Other aromatics Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 4783.4248 3244.3668 34742.2567 4957.2499 2168.3257 2168.3257 8689.3309 6479.4916 2441.6287 42673.7492 222877587 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 2504.6416 8337.9728 6367.7053 9314.9558 170690515 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 3070.8189 4273.3357 19927.0644 19927.0644 6096.3797 17903.6653 4495.8322 5739.5443 11357.3069 8658.099 6727.4012 2086.6007 4275.0966 8881.7404 7750.3686 5956.773 91683143 tfth Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2613.3406 4151.8014 46892.2268 6951.3653 4992.6673 2110.0736 3816.6869 3157620 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 2404.4948 39848.1808 12272.6255 8081.5305 10531.1445 3760.9897 4702.6579 5540.1139 242389906 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 1842.5312 67109.7385 3393.1995 4405.6187 4046.1324 6113.0005 6298.255 2422.9323 3406.192 3043.2464 19230.1906 6257.6928 88643417 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4854.8718 2550.3494 4202.3343 85010.75 14204.7916 3751.7189 11440.8532 3553.0976 3754.6305 5436.1745 2691.809 16667.7154 388472815 arsc Metal Homeostasis Arsenic Detoxification Bacillus atrophaeus C89 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 6461.191 2017.4043 2759.8192 5076.2752 3531.5475 2571.2399 3802.5274 3313.4652 6172.0861 3914.3338 3639.1681 5649.3652 9491.6879 2766.4024 3438.0113 5854.5535 3005.6182 9955.3322 6520.995 6445.3169 1989.9678 3075.9946 4068.4761 6580.5296 284167575 dehh109 Organic Remediation Chlorinated solvents NA Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 9512.6057 40253070 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2425.6823 5580.4035 3275.2834 4726.1733 74478.1232 4700.9769 3816.8329 3000.2279 4495.2765 5573.2059 4269.5719 5474.2268 2562.6097 2948.5566 8933.5661 2398.9523 8000.0952 7110.6417 6292.5189 2800.529 3442.4749 4958.9189 2317.1712 7413.0462 227540290 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33300 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 4962.079 2927.9518 6756.4148 6729.9529 4446.4891 2906.7395 2906.7395 5358.4567 2234.0408 8669.8088 5549.5806 2651.2856 18811.9312 5359.6161 40887.3245 26278822 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14204.542 2224.1936 11181.6234 32073.2402 32073.2402 7180.3462 12751.0329 3972.0997 328905852 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Propionibacterium humerusii P08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium humerusii; 2261.3146 4871.0768 8569.1459 331007862 alkb Organic Remediation Other Hydrocarbons NA gamma proteobacterium IMCC1989 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 2137.9336 2508.5559 3376.2991 92773.9731 3750.8372 3332.7998 2720.3823 5289.5827 3517.7058 4545.0136 2253.8294 4147.9772 5500.5428 2149.5584 2570.8297 4959.5565 9834.5301 84375881 terc Metal Homeostasis Tellurium Detoxification Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 3845.5187 89054185 pgk Carbon Cycling Carbon fixation Calvin cycle Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 7409.6531 10235.8373 2364.8273 179366.3324 6686.4594 12744.5134 5511.4013 5511.4013 8076.8164 4215.2431 13493.7279 2609.7315 28629799 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22702.8158 37222196 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 23878.6777 192360184 pme Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6319.2314 24216.5927 2371.5365 27533.8737 2736.9126 65244.1148 4765.8092 8220.0496 7875.5862 3511.2153 10121.772 3749.144 4901.0202 313104842 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2946.6142 2341.5191 2936.7948 3247.1342 4543.2038 3609.7637 4155.9166 2666.8499 2666.8499 2771.1331 3219.2011 23405.809 1063986.8754 2496.8559 6484.9691 2962.1131 11034.7781 5427.4717 2076.759 2746.2706 3946.8809 4022.2896 4818.8293 76556609 nitrilase Organic Remediation Aromatics Other aromatics Natronomonas pharaonis DSM 2160 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronomonas;species:Natronomonas pharaonis; 2573.9865 19885.379 4135.5154 10993.9812 2997.2376 107176.3936 6929.5266 7215.4686 5332.0683 2026.5523 2026.5523 7644.6633 7245.9696 7265.5333 2552.8883 7153.1555 10958.7844 9067.9796 8492.7471 2741.476 3423.3056 4541.7098 3903.8072 212001342 glucoamylase Carbon Cycling Carbon degradation Starch Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 2941.7126 3543.7747 3467.0996 5288.1711 1898.3876 5328.9705 1639.6371 2775.6509 50084932 ppk Phosphorus Polyphosphate synthesis NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2253.7582 3045.619 2164.2874 52894.6215 6247.7495 4445.4088 8706.3238 40003.3212 1695.2754 7620.8525 2730.4791 5380.1066 359785056 bphF1 Organic Remediation Aromatics Polycyclic aromatics Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3366.686 5858.2153 84935.6922 6349.7231 4318.848 3547.9736 6729.9412 4392.6405 4317.5684 6151.7011 3921.9906 8068.9877 2567.9719 6724.384 7050.8318 4269.084 4314.4481 2744.3323 94057.9023 156085401 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 69272.6584 6837.3374 26803.843 6955.6661 2743.5176 2743.5176 4141.6584 6374.3855 4876.4581 2640.3148 68652.8364 1238805.0932 7175.601 7383.205 430912.228 339647453 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 1777.3175 2385.7973 6328.7003 5670.7298 3808.2985 2313.6839 11992.1325 3382.2445 5261.845 2737.6014 153808525 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 24153.7709 343510337 chitinase Carbon Cycling Carbon degradation Chitin Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 2381.3375 4994.1745 5189.5368 5635.4571 1789.0343 60328138 endochitinase Carbon Cycling Carbon degradation Chitin Beauveria bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Beauveria; 2727.2014 4401.0245 3501.7137 354801938 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4371.9238 3352.122 6192.299 1860.5546 1860.5546 4109.7191 5585.5273 299535167 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 4743.5229 2548.9112 4717.2879 6514.2973 5214.2956 8403.8142 2561.5715 9927.355 5991.3795 2364.0391 2909.014 6331.8005 385280208 alkb Organic Remediation Other Hydrocarbons NA gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 19284.6505 2939.5945 94520.9141 6018.2045 6328.5564 2245.7647 2530.1492 2109.6297 3096.1016 4822.4948 315180213 bphF1 Organic Remediation Aromatics Polycyclic aromatics Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 2053.7204 2893.5989 33300.4167 25920.8589 7469.3078 319927024 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 2128.5285 3617.5336 4430.9657 2038.0633 8985.2912 2555.2196 147886441 b_lactamase Virulence Antibiotic resistance Degradation Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 33584.2899 2765.1118 3586.2508 17099.1938 4375.6524 74383.0895 4143.2503 103769.6774 5074.4489 8216.3914 4469.5816 26325.2397 78054.6768 138207.0447 2755.2814 5482.6922 25024.0495 6696.4614 5691.8329 2268.1998 5904.8516 6171.8702 15347.3938 4928.1606 346645112 amyA Carbon Cycling Carbon degradation Starch Listeria monocytogenes Finland 1998 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 2045.2692 3598.7222 5008.3125 7420.3998 2175.6078 3537.5255 149782945 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27714.2162 2890.0856 3724.8744 6099.3096 1542.9252 4221.751 124899480 arsc Metal Homeostasis Arsenic Detoxification Burkholderia dolosa AUO158 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia dolosa; 12146.573 7762.1008 7762.1008 697927.6935 3014.6753 109452542 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4106.0206 6209.2973 6822.6009 291532631 pula Carbon Cycling Carbon degradation Starch Megamonas hypermegale ART12/1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megamonas;species:Megamonas hypermegale; 1935.471 162708055 actin_ciliophora Other Phylogenetic NA Chilodonella uncinata superkingdom:Eukaryota;class:Phyllopharyngea;order:Cyrtophorida;genus:Chilodonella; 3738.2118 68931.8537 9070.3652 8757.4275 2853.5276 227466966 tktA Carbon Cycling Carbon fixation Calvin cycle Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 2470.1019 110588902 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 19434.2784 145846368 amyA Carbon Cycling Carbon degradation Starch Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 2995.1233 2500.6053 6141.6042 4551.7246 94849.2643 19760.0021 3835.8869 4977.1914 2826.4982 2826.4982 10141.2781 13738.7309 4705.0031 13884.8147 2282.2716 7860.207 90443.8147 10926.2123 6623.6372 365422713 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1979.0079 5556.8841 2129.7181 15743.3559 10870.5971 2664.7474 118474039 pcpe Organic Remediation Herbicides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 2376.6195 3502.1036 6843.7306 3449.0602 74499.1986 5107.802 4155.6187 2008.4794 2008.4794 2398.0464 13532.3949 5745.1828 5812.42 4612.6849 6712.0753 2890.3136 8802.6454 7318.0499 14279.2576 11224.0134 6808.9123 3490.5064 4992.4491 8229.5504 5073.613 6344.0828 147829157 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 30693.3301 3097.3322 2461.5214 49400.8232 44918.9503 5482.7484 2713.3439 2713.3439 8390.6535 3994.8601 2675.5955 307946963 pgk Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 5781.0294 51795.2455 333383396 chitinase Carbon Cycling Carbon degradation Chitin Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 2460.066 6800.3653 11629.5473 4882.738 5557.6547 270298518 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 3701.2323 3446.5525 4859.4825 3680.602 89308.479 6041.1915 3584.9389 2091.7133 2091.7133 3141.2003 9151.8454 7653.3528 6824.7348 5670.8098 2428.6861 3793.4477 10800.254 2881.0585 9899.2798 4375.3585 9574.6831 2581.317 4845.2415 5695.3282 2779.1506 254496.917 332699533 glucoamylase Carbon Cycling Carbon degradation Starch Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 3261.804 4096812 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2395.4099 2196.9429 3278.5284 7855.8658 25820.9557 3613.9549 3335.8689 4681.5913 29009.1804 29009.1804 3347.364 10025.8098 5130.0273 3937.2447 3998.9294 2763.8261 6721.0046 3121.1266 19395.9481 7238.2047 7741.3872 2369.3595 4965.4087 3678.9941 3555.6868 6367.9236 357018467 badh Organic Remediation Aromatics Other aromatics Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 6157.7858 2539.304 3042.2281 2318.8748 3670.7954 3852.7893 2772.6153 2772.6153 5859.7688 4767.0989 4485.5749 79269.9762 2209.5136 6770.5681 2302.9464 5170.8692 2711.8772 2823.6498 3502.4893 1808.1498 7814.0681 23491746 phenol_oxidase Carbon Cycling Carbon degradation Lignin Streptomyces lavendulae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2949.572 2081.0997 3278.2157 5374.9393 56061.2853 16606.6071 3859.9386 4230.6092 2615.2048 2314.5502 90417931 PRI Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 5422.0657 7325.2056 3389.0904 4894.3821 104494.1353 11768.7462 5634.1727 6276.019 6276.019 3712.9737 48394.2711 4671.0205 18268.0684 18537.2837 5214.2441 4558.2406 5429.0659 9716.289 4765.2144 7481.4512 4823.2809 7265.1514 8857.4103 5146.9266 5794.0124 19271.7966 294801214 amyA Carbon Cycling Carbon degradation Starch Bacillus megaterium DSM 319 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 2771.8453 21034.6248 3734.7972 5573.7691 3736.7824 2924.1628 4353.2837 1542.1327 3978.1501 350533300 chitinase Carbon Cycling Carbon degradation Chitin Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 7589.8251 8868.087 4156.5975 5185.5367 3950.1379 5675.5679 11303.4267 5300.2249 2080.2608 356698442 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 2434.2956 407287740 nosz Nitrogen Denitrification NA Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 2026.8214 2357.1459 3187.7328 5443.2798 3701.3383 188756.0939 5904.4258 4597.0974 9915.2885 7046.0886 2892.6404 12556.5758 7663.2081 4267.6923 11584.1124 1818.2371 6037.8366 5149.1972 2997.0511 5638.9487 111025414 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 14720.2437 2067.5317 3496.9343 4044.1823 2173.7982 2173.7982 2462.3363 5045.6948 3625.1141 4054.008 8534.504 5409.7995 2030.0226 3545.9964 3817.6809 7346.8992 330961139 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 4283.2729 2659.7256 4582.5153 4117.2453 2369.9673 2118.4001 3831.6353 9356.1113 3955.9689 4586.0865 7096.1222 282896105 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 6686.2201 3844.3631 5002.215 3015.7573 3015.7573 4831.3191 6490.5132 170885.2379 2438.7142 4871.0566 7251.8556 220964477 amyA Carbon Cycling Carbon degradation Starch Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 31681.52655 59193.10865 44548.26935 298550979 amyA Carbon Cycling Carbon degradation Starch Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 4204.1073 9799.822 28974738 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2567.942 3011.4336 3933.6503 5252.1403 3394.4018 3481.9087 9008.8086 5460.4892 10984.8342 5252.3558 6661.8859 2113.5997 3425.2659 6045.1852 3754.11 13757.9963 6435.6121 2669.0946 57592.0567 2504.1164 7485.0419 1905991 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus globerulus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2644.6409 6886.5613 6034.0938 118424373 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2705.8411 4043.6151 3724.9692 5360.1123 330932798 glx Carbon Cycling Carbon degradation Lignin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 8842.7896 6951.2885 10343.1641 3723.7036 3099.9167 83951805 arsc Metal Homeostasis Arsenic Detoxification Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 2094.471 3310.9362 374922755 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5938.8748 94676624 ppk Phosphorus Polyphosphate synthesis NA Baumannia cicadellinicola str. Hc (Homalodisca coagulata) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Baumannia cicadellinicola; 3036.1854 15901614.6489 226090223 terc Metal Homeostasis Tellurium Detoxification Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 2174.8889 3753.3382 3601.8294 4867.2387 8020.4328 6412.3275 2575.5238 7654.6066 5374.5185 2187.3254 2950.6076 7150.4089 5122.9599 6959.5149 159182408 tfda Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 2027.4991 2738.2947 2697.5208 5896.6067 2738.2302 56782.0923 3941.9905 3983.343 5117.1801 4362.3104 7824.0454 5876.0623 5530.8426 7977.5857 4931.0906 2656.0849 3564.6398 8623.7484 2691.3024 10195.1922 8426.7375 6501.9395 3116.3367 3296.7112 3759.3727 3949.3942 8808.9067 408780325 phta Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 2209.6516 5182.7452 4044.0729 4876.3791 4833.9617 1574.6901 78364176 SoxB Sulfur Sulfur Oxidation NA Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 2988.8751 2114.0019 1571.1828 302843220 gdh Nitrogen Ammonification NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 261950.2265 5147.7852 2892.0508 3690.0158 6963.6485 73882.7887 5987.7479 8813.1171 6836.3879 6836.3879 8642.7289 45668.065 7621.1706 6092.0294 8569.0005 17437.5102 66447.9599 8641.2983 1840.6446 3963.2322 6012.1944 39933746 ben_bcla virulence NA NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1974.1392 18346.6053 2487.0495 95682.5416 3742.0136 2672.8578 2672.8578 5038.2497 2598.2054 5852.9248 2906.4069 9216.5059 4156.306 5911.1837 16467.7035 116804592 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 2769.2711 4102.8584 7036.8602 6316.7094 4553.0898 11557.9626 2882.8057 3030.5631 6036.7192 6054.1026 2289.4603 3605.0731 158333828 pgk Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 2463.3296 2397.2966 3730.3002 9471.6954 109723.8041 4305.3998 4112.2149 5009.5501 5009.5501 4577.3361 8111.36 4348.1997 4251.3521 6311.7356 11989.5411 3337.6803 2614.9143 3748.9959 202217.1394 5945.2447 4337.9414 2643.3497 4694.8956 2526.0668 5528.4741 227069667 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 38477.1511 5240.1292 22242.2539 5418.4485 92109.466 4306.4193 4951.8328 3550.0967 3891.9137 4773.8982 3512.6436 3671.6477 5987.6528 17413.5583 4208.9864 6046.9799 2502.4419 3147.9575 1841.629 309261241 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verrucomicrobiaceae bacterium CHC12 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae; 2791.3322 2831.4495 4643.1085 6234.6718 8297.8392 4792.1763 4264.5666 256686144 endochitinase Carbon Cycling Carbon degradation Chitin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 3507.6072 10933.773 5037.9154 3525.7527 6266.8122 4276.2822 14516.8808 11808.9896 5847.0295 8553.5256 3686.7196 8386.2611 160917611 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6685.5487 332981903 beta_agarase Carbon Cycling Carbon degradation Agar Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 24032.7049 3084.051 3920.8398 6586.1015 241361595 arsc Metal Homeostasis Arsenic Detoxification Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 3554.0269 4172.0725 3184.6758 4791.3036 4368.2158 5023.0452 4204.6661 6923.3206 6440.6368 4783.8728 5529.2746 5998.5159 3686.9155 4353.6693 9638.0505 3089.6708 14021.7716 5576.2636 6757.9859 3965.5721 3800.7226 4633.1601 4782.0316 6371.1643 254475563 dehh109 Organic Remediation Chlorinated solvents NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 2929.0589 2708.7538 2992.7745 3237.7341 4468.3839 3981.3678 7572.9565 2828.3161 2828.3161 7034.4573 6589.7866 3987.8253 5730.5961 4264.0082 5729.7211 2073.773 2141.0144 3592.8405 2533.2596 10665.1449 312440794 arylest Organic Remediation Aromatics Other aromatics Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 2586.325 6279.2952 3304.0941 7993.903 6951.2917 6951.2917 14668.7612 5644.8023 4007.2136 8863.4116 4782.7504 5032.2594 9968.0656 3632.8627 5169.304 3259.3687 3358.1642 3640.2952 149358053 alkb Organic Remediation Other Hydrocarbons NA Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 2477.5547 69659.7572 3667.1192 4561.466 218665458 ppx Phosphorus Polyphosphate degradation NA Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 3274.6943 2947.2355 52801.0359 7103.4047 5898.4454 9027.8585 8931.4571 12611.9561 6307.1505 6101.9223 6101.9223 2850.9731 14949.7751 4684.7849 5771.0506 3846.5248 7626.265 4382.7267 5853.5587 16155.2773 2085.199 44829107 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2498.7492 2131.2548 3234.4568 5803.3225 72956.2759 3969.1488 7240.1411 4371.1891 4006.0771 3649.7552 7012.2557 2227.9136 4713.1385 2831.7986 421953132 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1825.7658 3004.0748 4432.4232 3345.5232 10179.978 242130409 trze Organic Remediation Herbicides related compound NA Dickeya dadantii Ech703 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 2161.1852 8290.0335 3115.744 2730.166 3958.9759 7391.6619 3894.4194 5142.364 1947.7429 422314327 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2227.4251 2961.6559 4073.3393 55786.1383 3248.4404 5499.3702 6486.4341 5771.3236 2589.5897 2758.8951 2382.8569 3700.2295 7132.5321 2348.2113 2555.7235 3014.5739 2310.7495 7014.468 374334175 bend Organic Remediation Aromatics Aromatic carboxylic acid Oceanimonas sp. GK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Oceanimonas; 2712.7569 2767.6837 4288.7772 499838.3349 2863.3197 43652.2068 2652.959 2652.959 2609.7334 11363.5472 7397.6997 4292.3915 444859.6505 6905.186 2519.5451 15389.8183 5715.7707 7964.3074 6675.6266 7514.7951 2808.5176 4383.1352 5056.1862 2609.5876 7017.404 228752950 pula Carbon Cycling Carbon degradation Starch Bacillus mycoides Rock1-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 3158.8719 184759.447 6416.7593 5066.3702 1891.826 4667.858 1895.6781 4367.9929 332592146 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2594.2655 2887.8982 270512518 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 3590.2564 2697.9261 8357.5866 74590.6577 2422.4719 5712.7841 3491.7337 5687.1156 7694.6401 4484.9664 2622.2442 3645.1454 2190.1081 9098.7578 254430241 arsm Metal Homeostasis Arsenic Detoxification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 15870.2582 296446294 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 5356.7122 13244.7183 4052.2771 2884.1719 3897.4204 5583.3411 17133.4098 2207.6363 2207.6363 21184.0691 3687.1101 19582.4203 4686.0193 4900.7334 6870.2811 6537.3439 12521.0292 5603.7614 37199.442 4588.9056 4414.878 3490.7443 6219.5624 148240828 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3513.9757 4649.6372 334366935 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes sp. HGB5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes; 3534.948 4636.3779 10492.0457 3580.0338 242391153 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 24200.9978 3363.7794 3198.8534 109620.4224 5121.5264 5026.091 9174.949 4520.9431 4015.3179 10287.7162 222447700 amyA Carbon Cycling Carbon degradation Starch Chloroflexus sp. Y-400-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus; 16143.111 3436.9414 6162.5697 119957016 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 3533.0348 3587.2059 3611.9741 4615.8013 9040.82 12602.4865 8811.728 21757.9014 4576.9532 13911.9061 4996.7505 8617.9261 2667.732 6093.54 2420.7589 354596337 cysJ Sulfur Reduction NA Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 2822.9453 3370.5629 67902924 nitrate_reductase Nitrogen N Assimilation NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2702.5524 4303.7728 206074.1717 4729.6327 13928.1808 24670.252 5831.6193 44922.4669 6901.0489 6901.0489 2676.325 6651.4231 2147.5852 2310.5226 7885.8195 21067.8358 3194.5905 4477.9653 4963.2547 198274706 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 2319.9563 4124.2158 5220.2602 387502969 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes 6609 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 11634.1905 12898.1863 160917599 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10870.0357 7801.0959 4435.3489 5230.4787 4072.4653 4072.4653 8497.8124 6604.5825 5541.3742 9065.7226 3946.875 5478.3628 8118.9791 4370.6324 13311.6481 17073.7448 6834.7953 3830.3945 3249.518 2668.5257 71556835 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 4391.2565 4806.107 4806.107 3613.6835 49237773 ppx Phosphorus Polyphosphate degradation NA Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 7173.7068 2333.5053 312620106 cda Carbon Cycling Carbon degradation Starch Eremococcus coleocola ACS-139-V-Col8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Eremococcus;species:Eremococcus coleocola; 2277.0465 1950.8239 109452543 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10278.8075 3794.6929 3995.5683 2696.8381 37955600 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 8857.2873 5588.3447 6063.0782 2929.5508 6102.9147 2678.4137 331020346 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 3571.6543 84978.7746 6064.6199 1970.77 225012600 amyA Carbon Cycling Carbon degradation Starch Flavobacteria bacterium MS024-2A superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia; 10070.0824 3235.3848 3459.6626 2918.5248 101134.149 6030.9496 3990.2513 4266.252 4157.4633 6216.1125 8696.3475 2099.6873 5057.3677 219675528 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2852.2972 386758108 vgb Virulence Antibiotic resistance Degradation Bacillus sp. JS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9766.4255 3992.3596 60398.8253 10034.2821 3863.3746 6285.6469 10192.2455 4676.4768 2922.6202 3621.1719 358401075 linb Organic Remediation Pesticides related compound NA Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 29463.0115 4122.762 2618.8028 1818.2237 405379257 pcag Organic Remediation Aromatics Other aromatics Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4366.2816 2418.5729 3309.1101 12631.2241 2362.9645 8437.4798 3126.076 4956.3885 6839.6384 4411.2786 10961.8822 21829.4981 6654.2692 4827.776 3058.5897 10284.8935 4314.8714 8139.6339 2011.5476 8473.2027 3262.0514 3931.3164 6649.7584 308231159 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3842.2179 2781.217 373108068 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 4702.1147 3078.0645 3078.0645 116096846 ara Carbon Cycling Carbon degradation Hemicellulose Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc mesenteroides; 3758.09 2516.9801 5295.6551 7065.557 3861.2194 4665.4758 6039.6691 6096.4821 68272022 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiaceae archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae; 1761.2185 268163206 ppx Phosphorus Polyphosphate degradation NA Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 5042.3389 4135.5441 4267.1464 13252.7049 2195.3514 2195.3514 7399.3036 5879.8889 383761670 nosz Nitrogen Denitrification NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 2915.5929 3312.8436 2031.702 4763.5157 3647.2552 57504.8431 4442.4419 4804.296 3816.8272 7593.2466 6117.5944 5230.4094 6272.0855 7147.8602 3586.0099 7190.8991 2716.238 9284.5962 6675.3178 6856.2917 2856.7313 4045.3895 4263.1181 2811.929 7068.375 158439783 nifh Nitrogen Nitrogen fixation NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 2834.4405 20099.1625 223964434 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 3324.0283 2173.4787 2173.4787 4300.1227 4786.1518 392405666 terc Metal Homeostasis Tellurium Detoxification Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 2298.7242 7017.8881 2481.4983 49650741 cellobiase Carbon Cycling Carbon degradation Cellulose Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 11927.7515 383791684 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 2111.9559 2266.6499 5221.8729 4170.0544 2386.2733 8787.9881 1859.0063 3100.7029 6229.0437 2628.2155 399054281 fosb Virulence Antibiotic resistance Degradation Brevibacillus sp. CF112 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 4931.3354 4569.154 4743.8894 3632.3104 137851.8247 6834.0782 3995.514 2439.7039 2439.7039 3298.4104 12190.1107 6694.938 5020.4112 2698.8592 2961.0126 7480.7417 2165.2872 14321.4123 4777.028 3458.8494 3404.0484 4311.0724 2557.2632 5865.6261 139003476 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6606.8436 5205.7209 2645.8266 4963.6509 11613.745 3990.1404 1815.7836 227340234 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 2904.2879 3606.4332 5537.3913 2346.1883 89013.7271 7427.2697 3479.1634 4541.3805 6642.6525 6642.6525 2913.8222 7864.1954 5739.3315 20776.425 17842.6681 6584.2989 2618.6158 3262.9374 8148.4224 3074.446 8491.6333 5398.1692 12864.9315 4600.6394 4071.2815 5032.2274 3257.3347 282601002 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 3495.4852 3104.8506 307586255 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3035.4284 78206.0255 11614.8086 7544.4381 4421.8004 12991.9109 7688.7556 12931.1148 4109.7657 2133.3337 4805.4597 4579.8397 2617.8297 6584.0453 163261567 ppk Phosphorus Polyphosphate synthesis NA Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 5681.0881 2572.7773 25228.4018 4931.5336 6846.7915 302660364 nitrate_reductase Nitrogen N Assimilation NA Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 3430.6492 9505.5251 80323.7957 5218.44 343515219 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2135.3774 6035.7147 4293.21 5244.4124 10149.337 5472.0668 8422.397 10131.5325 5468.5519 2766.9021 23646.241 11819.051 2337.4322 3526.8926 3507.0824 27532.7067 163514.759 81168530 nitrilase Organic Remediation Aromatics Other aromatics Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 2316.1766 5003.6881 1738.5459 19905.3768 303318145 p450aro Organic Remediation Aromatics polycyclic aromatics Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 2876.4361 2296.9286 3258.7338 3828.2353 11937.1428 4962.315 3325.7054 6039.0559 5627.6957 2787.331 358392893 aln Organic Remediation Others NA Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 4478.5874 4064.8687 84932.4006 3484.9612 4237.8943 6607.0987 4846.2974 7368.5243 2900.7244 12080.7275 13072.2059 2434.031 3462.3925 5706.2899 94417716 ppx Phosphorus Polyphosphate degradation NA Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 7628.9132 6961.5339 5286.794 6404.6332 3324.813 3324.813 7335.6655 5559.7006 4097.0497 3777.6314 6226.852 87302506 nifh Nitrogen Nitrogen fixation NA Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4921.3474 255930151 phytase Phosphorus Phytic acid hydrolysis NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 3107.1375 18199.9489 238795263 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 31943.0216 2431.7941 21464.7847 47496802 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5011.6413 3892.8257 8343.2979 10354.7515 2785.9345 2785.9345 11490.129 3485.428 6287.842 126249721 PEPC Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 2583.4448 6910.0635 62973.0336 2800.0254 2800.0254 7018.1244 13895.0562 3371.6325 2410.757 4703.3775 6297.3428 15891.2537 10260.9729 5861.0665 2990.031 4246.5754 3937.1227 2532.1467 86359276 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 7356.046 2325.8449 3235.797 3669.0982 3352.6352 6864.6615 4000.2745 5098.6174 156446935 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3526.4656 3605.8813 4828.7655 2760.2248 76875975 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 5792.5833 1580.2712 29293344 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2047.0176 3119.7811 3342.1369 6031.9801 72156.7764 5140.2163 2512.25 6511.9981 2172.3044 6284.5172 1827.2877 2085.1289 2588997 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium methylovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 1931.0524 2702.5279 25790.1969 20527.8329 80728.2706 19680.8617 19680.8617 2595.2908 4949.5847 3836.9869 4784.3685 6261.2179 89014.3856 7097.8513 2306.9319 2779.7975 4173.1668 33391271 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2689.1614 3730.9505 4980.8135 3002.3639 3630.3864 3630.3864 6496.7767 2712.9716 3931.4352 5696.5384 2936.0595 3677.3393 381193572 ppx Phosphorus Polyphosphate degradation NA Methylomicrobium album BG8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium album; 3425.5835 4472.9078 145496.4161 19417.9799 8555.3006 334882145 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 4534.4474 2742.7051 58877.967 3736.7717 4926.2925 8205.0289 5386.3122 4525.0359 6420.5458 2008.2822 3079.1599 3059.2832 2050.4644 5585.7485 85830385 amyA Carbon Cycling Carbon degradation Starch Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 2481.0634 292560813 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas arsenivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 8099.6006 12984.9944 8923.2643 4171.5632 3403.7675 2745.4078 6775.8703 2002.6695 7667.2479 2233.2366 2986.4843 10940.8843 3007.3725 5031.8282 383331683 ppx Phosphorus Polyphosphate degradation NA Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 2368.9371 5891.4405 75803.4629 7006.0421 6409.4924 9513.905 5347.2968 4664.5401 10415.345 8209.2628 4104.6512 3290.8341 4628.4067 398142356 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5491.6313 2219.3489 3592.7516 4743.7333 3940.0376 5751.5248 126838.1805 4389.904 5396.3209 4351.8352 3252.3709 3252.3709 12339.7479 5609.5189 11248.9827 4514.5855 8077.1287 2598.2019 3067.7928 7996.6939 6651.3415 9628.241 10367.6133 3684.1576 2096.4138 6405.0827 126726345 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5058.6331 2754.2556 3640.6196 4879.7768 4850.0346 17296.5318 42616.4327 2972.5962 3157.9778 307632054 nrfa Nitrogen Dissimilatory N reduction NA Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 4870.7922 3266.4811 9641.7844 3284.1623 3284.1623 3151.7243 7149.7336 5596.7194 3606.0122 49612440 nasa Nitrogen Assimilatory N reduction NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 3627.2587 5023.733 3551.9616 5327.7293 2356.6526 112185.7708 5519.32 1948.2022 1948.2022 4408.8065 9927.8414 4377.0546 5064.6804 6573.1679 8312.8584 2422.9796 4445.1579 5638.2618 2817.1605 11434.3485 6467.1926 4095.3049 5204.0979 5553.5333 2894.3431 6181.5641 221155764 urec Nitrogen Ammonification NA Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 9222.451 2084.1831 3740.8498 68072.784 4284.2939 2303.3613 2303.3613 3614.6793 2410.6737 10052.6672 2383.1588 1939.5141 17345.2767 358371167 mer Metal Homeostasis Mercury Detoxification Aspergillus kawachii IFO 4308 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 2582.7229 60850.8624 4073.0433 2836.5471 6496.3659 4243.4611 3954.6963 3861.1336 2799.0874 6941.8252 8399.884 5293.7041 2641.9819 3617.3964 2071.2793 4263.1327 90412817 arylest Organic Remediation Aromatics Other aromatics Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 2313.8875 7384.7857 310828329 amyA Carbon Cycling Carbon degradation Starch Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 2818.3365 2079.3809 3569.4069 21193.7238 6281.2353 6281.2353 3613.5659 5295.4531 2635.8538 2535.7699 3768.1562 5051.2772 1776.5782 3042.0768 4920.1022 123444140 nirb Nitrogen Assimilatory N reduction NA Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 18183.0215 6271.1048 7160913 nirk Nitrogen Denitrification NA uncultured bacterium wB57 superkingdom:Bacteria; 2645.5039 4115.341 3498.4791 5485.4403 2954.0571 2746.4044 2103.0683 7045.0102 330446706 ppk Phosphorus Polyphosphate synthesis NA Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 3152.3863 3305.4294 5318.4544 5606.2077 106167.724 4594.0342 2330.6727 2330.6727 2799.6067 6793.961 6491.9612 2807.1397 7493.4436 9199.4921 6630.4613 7081.2084 3346.7444 7225.7857 224179515 mg_chelatase Secondary metabolism Pigments Chlorophyll Monomastix sp. OKE-1 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;family:Monomasticaceae;genus:Monomastix; 5183.5584 151280314 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 4209.8405 6505.7255 6505.7255 3300.3947 373223154 atza Organic Remediation Herbicides related compound NA Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 19552.9547 4895.3098 4519.3532 266622690 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 4840.0517 3621.3481 4212.5039 4832.9448 4675.5887 3214.6474 72529.6045 4208.9614 6330.9197 3946.1413 3946.1413 3799.3357 8013.9326 6997.4548 7871.6941 6748.5195 3310.5507 2912.4662 8052.2124 2850.8575 12645.5707 5316.8805 7891.7006 3270.3968 3964.2046 6520.4943 4279.8106 9461.2753 19774217 dsra Sulfur sulfite reduction NA Desulfovibrio aespoeensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 2047.2092 2983.3177 4291.293 2429.7873 59358.6629 3643.1532 3979.272 3868.8785 3868.8785 5423.8805 8534.0644 4355.5787 4312.4282 5994.6704 4688.7564 3473.8738 8071.5697 9588.4156 5026.7703 94342.8849 2532.7781 3944.6834 3620.5515 2466.3121 7308.3407 113927269 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 22715.7423 353681972 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2465.5131 2614.4449 3269.9327 2856.8752 4549.5978 72330.9802 4272.3009 4391.5156 4911.5682 8036.6725 5408.9222 3366.0182 4428.5255 5549.8524 2492.6144 3286.2182 6097.7814 2407.0761 9671.6735 3986.2312 6061.8512 2330.2979 3253.7246 4408.184 2267.0293 6839.1106 223964743 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 4640.6838 38535.9527 6118.6286 228698198 nbac Organic Remediation Aromatics Nitoaromatics Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 26326.1132 10250.8481 10250.8481 67164.6453 257487852 cysI Sulfur Other NA Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 2327.3329 3718.2151 16234.9513 58105.5347 4866.5395 14629.0187 5843.3262 3188.2039 3121.0257 5756.4848 207496.1615 3735.2474 5112.815 3339.8178 7578.4562 385763853 dsra Sulfur sulfite reduction NA uncultured bacterium ws085G8 superkingdom:Bacteria; 4005.0055 21447.2486 108155.2358 34191.8749 41262.5971 19173.8682 5108.2824 2687.0652 74133.0846 346920963 poba Organic Remediation Aromatics Aromatic carboxylic acid Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 1924.2428 5394.1007 2240.5579 2009.9546 2009.9546 341432.8053 5400.8412 3368.6408 6034.309 2533.6897 7523.1722 3350.8495 6004.2666 2514.8624 2328.1623 312231 exoglucanase Carbon Cycling Carbon degradation Cellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 3769.9434 7311.7294 2612.2008 2612.2008 7469.8276 12775.8119 323366218 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2779.8163 4936.8755 12045.4748 293370.0217 26478.192 7299.2687 4011.1543 4011.1543 7852.066 7676.802 16466.3237 3596.7612 5202.1342 4984.2707 8756.0385 2889.2198 3811.3338 15098.9025 6744.9499 85375918 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium sp. F63 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 3213.8744 2200.4311 2779.8341 3544.7793 5306.3568 6390.51 4557.2269 7145.0963 5142.3843 242216727 p450aro Organic Remediation Aromatics polycyclic aromatics Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 2342.4828 4592.418 4907.1921 3820.0467 4722.3732 9627.0975 1838.9357 2716.6667 18034308 dsrB Sulfur sulfite reduction NA Desulfonatronum lacustre superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfonatronumaceae;genus:Desulfonatronum; 2082.6557 2995.7774 2903.7631 2903.7631 4019.31 1693.2283 294323955 urec Nitrogen Ammonification NA Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 38795.7987 6609.4648 11776.6464 17773.2016 34359.7414 13228.553 7023.8085 10172.191 4081.6049 36513.7296 147743701 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4833.1805 4943.1766 7136.2992 4392.2822 5773.6471 4338.1097 4069.7372 3771.5003 3224.5849 2591.7474 6680.1212 5769.0926 2059.1498 5221.8669 3461.3626 23216.1344 375144093 xylanase Carbon Cycling Carbon degradation Hemicellulose Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 3323.5696 8420.6977 13963.3537 3351.327 2460.7247 260439401 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 2422.4829 4418.1519 5500.6154 328922305 FBPase Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3358.0766 2869.2483 61589.5729 10364.4561 3574.633 5337.1763 3036.7366 3594.4632 8143.9881 3739.793 3623.5691 88797057 pula Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 2989.4236 55978429 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 2401.8443 3869.3169 2552.5098 407256107 bphF1 Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 2872.8904 2078.3081 3186.7695 89591.1365 2973.0318 2973.0318 6886.3936 7796.6907 4482.832 2610.8319 2204.636 10232.2759 1796.596 3173.6099 5766.141 55792811 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium canescens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 94096.07 102502.4889 2347.6094 1926.1564 157285318 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4392.4032 6889.1033 334120831 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 3203.5278 57860.4695 3968.3887 2563.6892 7171.303 4338.7639 4762.8893 7359.2353 2511.6594 5385.831 10554.9794 3077.5185 3369.2787 1941.4286 4408.3698 380692178 mcra Carbon Cycling Methane Methanogenesis Methanohalophilus halophilus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus; 3032.8404 3120.9063 357013112 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 106058.7571 240267864 ppk Phosphorus Polyphosphate synthesis NA Bartonella grahamii as4aup superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella grahamii; 11583.3266 4677.5208 5314.0892 339060731 chitinase Carbon Cycling Carbon degradation Chitin Clostridium perfringens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 2449.8795 293605179 bend Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 2563.9459 7799.4978 3310.2087 3753.3439 6236.8626 4995.0821 7710.7243 7485.4484 5365.5695 5191.3325 4121.1934 2859.4436 8226.4775 2847.9193 7798.4274 5282.3823 7383.7629 2596.9278 4121.3464 4821.9939 2646.5713 6061.2713 386867142 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. animalis ATCC 25527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 39709.2078 4862.5129 5540.2247 3682.3971 3245.8024 2054.7746 2054.7746 6080.0136 3549.0038 7172.5793 2330.9489 6169.3643 3167.7642 2982.2968 4213.1112 2961.7258 5673.1777 357404855 atza Organic Remediation Herbicides related compound NA Methylomicrobium alcaliphilum 20Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium;species:Methylomicrobium alcaliphilum; 4815.1716 3412.4419 15716.9129 5181.1488 3718.0256 100088.2043 4293.9331 5111.6101 5763.2362 2878.0282 2878.0282 2953.9611 7717.5394 5414.2554 12002.118 6116.712 8739.871 2352.6862 12950.2795 5509.0619 2941.8645 4058.4671 4670.336 2231.3124 5657.4436 145318504 tehb Metal Homeostasis Tellurium Detoxification Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 2489.3767 9412.6154 4816.0092 7655.3504 5571.0324 2487.4606 3441.1698 5234.4503 4829.5931 77378671 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7484.399 2242.3077 5868.2762 7068.3715 5655.8182 10673.7969 10673.7969 5715.367 5185.5714 3391.1142 7929.182 2939.4046 145238722 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 1950.212 13136.0114 4086.059 85715.4527 3821.1645 5368.0284 2177.0281 2606.1211 7467.9023 5616.419 6314.445 3297.3172 6745.2035 222106171 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 2196.739 3190.7761 93908.613 3906.9244 2168.0262 2168.0262 6701.6529 19056.8625 4379.3868 2708.0568 8206.6324 3324.5127 392964108 phn Organic Remediation Herbicides related compound NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 13080.2799 32307905 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5346.0497 2310.1058 4997.255 14935.7994 8871.0878 3379.6559 3379.6559 9374.2343 7406.0795 5556.7892 25244.0151 4426.3784 5507.386 6446.4963 11449.5873 36412.1776 6944.5801 7751.6637 2901.7117 4686.6115 6034.0899 2314.3514 32220.4559 383299304 arsc Metal Homeostasis Arsenic Detoxification Candidatus Aquiluna sp. IMCC13023 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Candidatus Aquiluna; 12965.8902 4230.7279 117993965 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 3386.3487 5086.7159 3901.9648 5642.2892 6520.9509 95977.4714 3865.7321 15979.745 7162.5767 4915.7672 3683.8541 10476.1166 5264.571 3015.2353 4848.0342 4633.8003 5206.4513 5849.1152 315470243 cda Carbon Cycling Carbon degradation Starch Ethanoligenens harbinense YUAN-3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ethanoligenens;species:Ethanoligenens harbinense; 2233.5561 5560.2586 3087.4155 148254272 nirb Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2344.8105 3674.649 3674.649 145569856 napa Nitrogen Dissimilatory N reduction NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 2308.903 2853.8687 3541.6731 3576.4922 4524.4412 3185.801 69881.0974 9802.2924 3176.6613 7297.529 5708.1073 9027.8638 13992.5873 3103.72 2790.2364 3862.9986 8769.475 3727.1408 8735.1647 3388.0341 4261.4047 5008.9889 3764.6288 5126.4067 390421974 chitinase Carbon Cycling Carbon degradation Chitin Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 88436.6644 9556.1056 3112.3644 7162.2388 6029.85 3903.6871 10418.9836 33439.839 7703.6825 4193.4866 4391.8752 2527.593 4354.5874 14971.5854 365179344 xylanase Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 3994.2792 2684.4911 3150.0676 5066.6216 5066.6216 5915.661 6970.1387 20268.2916 17866.4973 2302.842 6355.5589 2139.8704 387844640 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 8563.5557 2351.557 2351.557 197105153 ppk Phosphorus Polyphosphate synthesis NA Phenylobacterium zucineum HLK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Phenylobacterium;species:Phenylobacterium zucineum; 6121.5654 3606.746 5872.603 5872.603 10742.9286 197716047 rgl Carbon Cycling Carbon degradation Pectin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 4702.8162 9892.4032 2856.9064 4484.7365 3763.872 4400.3929 2030.8643 2030.8643 3330.029 9611.8044 4804.862 5911.1861 4520.1702 4854.2165 5783.3821 3175.5228 16629.3993 6787.9883 1727.9925 10374.6425 9198.7506 3297.605 5597.0927 212171420 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax dieselolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 3077.0128 3328.9064 2377.4798 6478.3566 6478.3566 2751.6552 12358.3744 3937.1237 8926.2975 5702.4155 5981.141 1998.4741 2453.0098 402754992 nfsa_2 Organic Remediation Aromatics Nitoaromatics Pseudomonas putida LS46 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2152.308 3448.9864 14843.9826 117415.5348 5125.4021 2092.7241 2092.7241 7976.8327 4613.2557 4358.4207 8044.3006 2126.5342 2155.5053 5596.4017 2709.0052 10357.807 4938.5712 5103.4171 2324.0014 3160.4342 3824.9668 2407.4481 6191.3658 150036086 SoxB Sulfur Sulfur Oxidation NA Leucothrix mucor DSM 2157 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Leucothrix;species:Leucothrix mucor; 3357.3607 2832.3689 4736.6235 3938.086 4271.2338 2428.2281 93117.8727 4415.9935 5618.1137 4237.8384 3672.0667 5072.616 5355.4446 3642.9348 4542.2903 6535.387 2580.2353 2538.1706 6444.3386 2384.5078 7727.9546 7257.2159 2029.7544 3301.8548 3256.3123 2433.5589 4652.9246 190686677 B_lactamase_A Virulence Antibiotic resistance Degradation Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 14718.2687 2855.8692 29544.4025 2930.9204 23559.2668 6313.9682 1945.6439 39975799 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1962.015 3775.1636 3861.059 7781.1097 7781.1097 6402.1681 3502.1436 3010.3218 4984.0238 3557.568 3477.5814 3542.0622 4735.4575 37726801 dsra Sulfur sulfite reduction NA uncultured prokaryote 2450.3398 3625.7524 1732.9262 3281.8338 148256011 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3156.8196 2515.2738 5072.9817 97871.2626 7453.9551 4548.3564 8396.8971 5353.0767 5175.4675 6229.5974 2431.1787 4228.6891 9656.5512 7238.6781 6427.0664 2590.4258 3567.2678 2491.4402 27376231 xyla Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 8154.0019 30122.0294 5541.4893 3340.2048 5246.4826 7014.4462 15450.6431 2239.6777 167517687 gdh Nitrogen Ammonification NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 2272.5758 118171874 caaD Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 6621.9149 4442.6788 15921.5827 4320.9839 5953.9389 3063.4606 4846.2607 2148.7156 49476166 tktA Carbon Cycling Carbon fixation Calvin cycle Bartonella henselae str. Houston-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella henselae; 3567.7639 5791.4957 3032.413 255281021 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 2362.9684 4339.7806 18593.5855 28648.1579 3400.6322 3919.0716 3750.7174 15021.212 4919.5073 3255.989 4913.5576 2391.3277 15758.2702 3653.0295 17073.8851 3504.5213 2708.1455 3679.2173 56708486 ppx Phosphorus Polyphosphate degradation NA Francisella tularensis subsp. tularensis SCHU S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella tularensis; 2701.0873 2866.8203 5527.6978 4662.5255 8442.9987 3053.5638 94471299 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3563.9693 3374.8509 3509.887 2063.5827 4854.8588 1677.3903 2776.8196 6457.2593 309245234 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7774.0184 3319.9739 57531.3642 2192.6206 2192.6206 13389.11 10330.5603 4297.4623 14150.6522 324973368 RgaE Carbon Cycling Carbon degradation Pectin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 7965.3175 335436500 phn Organic Remediation Herbicides related compound NA Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 3179.0063 6446.8303 14376.053 14376.053 2679.7039 5528.4295 62468106 bco Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. 2FB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4520.0587 4156.6658 4404.0329 5502.0943 2474.6726 4417.9442 9603.1611 9603.1611 2657.4911 8575.6344 5101.2106 3967.4997 5715.9028 3118.252 7365.997 189203783 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4031.6786 91046.4152 4884.745 3026.5998 3026.5998 3263.9499 6419.8089 7054.4243 8016.3612 2823.4556 9953.7536 5820.5815 8250.8061 5302.6239 2981.7679 5716.2239 154087414 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 1978.6573 2540.5674 30716.7271 3979.7447 2727.8841 306488269 nirs Nitrogen Denitrification NA uncultured organism 5798.7456 3594.4212 5883.552 329922322 nirb Nitrogen Assimilatory N reduction NA Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2492.9928 2792.6219 12454.4997 3601.3532 6029.1853 4489.0927 4084.9641 7221.71 7792.0279 4393.2348 5688.2596 4106.6449 4939.7815 268590922 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 1825.002 2870.9199 3808.0198 4966.0297 7884.4196 1988.8225 3032.219 3227.3745 61808006 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3840.1062 27516.7749 7570.3185 5388.4169 24063.28 6010.8728 22452.9249 18378.4509 18378.4509 3371.9616 12109.4821 5618.7687 7375.0077 36547.782 3074.5357 4515.4175 5361.254 5442.0585 11679.3495 4302.8099 11091.8592 8939.7523 3321.5843 7985.7968 300545463 amyA Carbon Cycling Carbon degradation Starch Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 31758.6476 2055.7807 117779.8089 3340.8496 5606.5131 73257.7359 54702.8067 2761.5354 2761.5354 3059.2765 8587.9563 5520.6648 15542.8877 2783.9775 7817.9336 10200.3397 3822.0609 18465.228 4140.054 3717.3986 2157.355 6164.6965 34017180 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2707.8021 3088.9145 10272.4904 3158.6176 6322.9438 225001292 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2245.4154 312961385 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 2296.8851 6296.9671 3843.5269 2381.4218 2381.4218 19168.4929 2465.7264 4203.4587 1753.7054 2813.7504 2654.5503 70930922 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2863.549 6962.282 6590.2763 64680.9778 2382.4973 2382.4973 6620.3238 5003.8548 21323.6092 3327.1822 9468.7068 4217.8928 5682.7744 2403.9925 169856907 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3599.7219 2747.0835 7650.5499 11083.3923 5153.4663 127173.1022 18305.8518 4932.3652 3343.356 3343.356 4441.9804 7447.436 6143.211 7307.6016 4766.9537 6348.1579 2537.4073 2998.5291 6926.2281 3366.2273 19681.0803 4483.1762 7801.903 2839.0381 4347.5548 4707.7557 2921.379 11211.752 208605072 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 6797.7677 2885.9126 38569312 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 3315.9419 2190.1718 5177.7879 162448631 amyA Carbon Cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 2942.2699 3712.5692 14461.3219 8746.1937 100105.5379 4628.731 3977.4973 5526.9915 5539.8579 5539.8579 3281.8794 6673.6834 5666.7165 5565.0821 3767.1138 3376.2115 2629.7343 6886.4264 2147.9815 10246.5023 5558.9538 7964.0798 2366.5828 3389.6287 3138.3091 2534.3345 148652588 PRI Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 372466.7255 3317.3514 13056.2537 19260.5339 1881.3926 5346.3833 384092581 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 2489.0438 7543.2958 31383.1779 3764.4274 4091.0774 2659.864 3582.5611 3388.7921 2608.0603 9208.4737 1982.9539 3942.0545 2171.0373 11450.8322 302498547 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 2239.4647 3760.6612 6820.3019 6498.9764 73854.1537 5115.3097 3986.0136 10433.1867 5036.3291 8394.9896 5706.4343 2858.7441 3043.5088 14258.936 3343.7351 9738.054 5380.3775 8620.2466 3330.0541 16082.4789 4802.633 4000.1901 60280049 amyA Carbon Cycling Carbon degradation Starch uncultured murine large bowel bacterium BAC 31B superkingdom:Bacteria; 3029.436 332880359 ara Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 2343.1505 2862.4398 2511.6708 6153.0863 8881.6609 3156.7313 8967.9028 11276.5716 2461.2327 3344.2181 3567.9902 302540481 one_ring_23diox Organic Remediation Aromatics Other aromatics Streptomyces hygroscopicus ATCC 53653 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces himastatinicus; 3166.9999 4562.5287 148978900 nrfa Nitrogen Dissimilatory N reduction NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 2917.8009 2456.0879 52134.2253 11836.3006 17232.1691 10462.4468 13223.7355 3135.6738 182416142 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 2525.8258 14114.2931 4916.0186 2655.0853 4790.9548 3179.7708 2907.848 21073.7325 1815.2961 3257.1738 3048.7837 2146.3947 323472809 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4016.3333 2871.7511 89311.9271 4604.1378 3290.0615 3290.0615 4123.1941 8271.8247 5455.911 4554.3817 6491.2821 2659.6127 5557.8615 7572.1543 1904.8478 3209.1335 4347.565 4000.9962 6374.506 151302248 aps_apra Sulfur adenylylsulfate reductase NA Desulfocella sp. DSM 2056 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfocella; 3189.8223 6904.5196 4511.7747 3664.4506 24259.2434 17477.8544 2632.8009 319995360 atza Organic Remediation Herbicides related compound NA Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 2570.0632 5658.1189 2818.7982 13701.7073 343802094 arylest Organic Remediation Aromatics Other aromatics Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 3571.7324 2864.098 4257.2186 59343.6398 3986.7609 9670.029 4952.163 2643.0394 262200158 cutinase Carbon Cycling Carbon degradation Cutin Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 11603.6367 6065.4396 2351.3202 2193.8453 6031.9316 12667584 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr624-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 7488.445 2727.382 3870.7261 4545.0382 3552.521 8533.1904 8533.1904 6691.9832 4297.8256 5402.7153 5592.4344 5471.8786 2083.6512 66850791 arsm Metal Homeostasis Arsenic Detoxification Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 83298.4198 3969.1184 84372831 dsra Sulfur sulfite reduction NA Methanosphaera stadtmanae DSM 3091 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanosphaera;species:Methanosphaera stadtmanae; 7078.3697 300658994 TIM Carbon Cycling Carbon fixation Calvin cycle Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 6913.7438 1996.7959 350598168 xylanase Carbon Cycling Carbon degradation Hemicellulose Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 20736.0337 3323.1026 5545.8805 440307.602 2169.3624 2169.3624 8688.1514 4917.7275 4949.626 5734.2051 2604.8186 9024.2048 8920.3025 4780.6589 11091.7162 5336.5851 4864.4857 3497.3997 4443.089 5787.4309 148653228 pgk Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 34288.762 3879.4628 7865.911 1773.7293 163782520 tehb Metal Homeostasis Tellurium Detoxification Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 2716.838 3294.5988 4819.1254 2580.3065 6855.69 3516.5081 4429.336 4047.3468 6248.4813 2167.652 4746.9815 2042.3821 2754.6651 2599.9238 50919564 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5984.814 1866.7014 1866.7014 16539.0808 5306.519 3812.09 4837.5134 2291.7887 283829616 urec Nitrogen Ammonification NA Candidatus Poribacteria sp. WGA-A3 superkingdom:Bacteria;phylum:Poribacteria; 3586.7226 7152.8871 333977503 norb Nitrogen Denitrification NA Veillonella parvula ACS-068-V-Sch12 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella parvula; 4802.0119 4034.7309 3639.5838 2842.5925 7316.5543 6919.6147 4559.8559 3352.5267 6502.8105 13548.4685 6118.4685 3241.209 3837.9257 3631.0051 2376.9477 4628.2409 153962662 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 4556.5142 3088.4701 4198.3375 5945.3554 3837.7575 10454.9947 7450.8144 2188.2171 2188.2171 158127.1397 28685.112 4340.5957 48851.3445 7231.7078 5662.4988 3538.4047 5482.7346 5690.5893 220933290 FBPase Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 3076.9421 2249.4947 172055.9863 3672.5325 3672.5325 3048.6625 3040.6427 260650553 amyA Carbon Cycling Carbon degradation Starch Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 2667.632 387590626 nitrilase Organic Remediation Aromatics Other aromatics Bacillus methanolicus MGA3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 2637.0743 69461.7352 294676366 ppx Phosphorus Polyphosphate degradation NA Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 7846.3561 3767.5019 3721.8178 269993102 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7126.4377 2856.7807 2185.739 5829.0353 4768.5505 10077.6462 1824.8638 266619137 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3376.4604 2233.1435 5009.3542 4337.5365 68085.893 5876.442 3203.3862 6020.7216 10084.8298 3398.5486 1868.8378 2860.8641 2046.0412 209401612 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1934.591 4319.9495 3052.9251 305679971 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 3654.175 9068.9683 3406.0444 13267.9047 7754.8135 7754.8135 4168.8478 12378.3625 3110.8984 2466.8859 4833.78 19192.6668 19851.1685 238699907 phn Organic Remediation Herbicides related compound NA Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 8510.7081 2147.2812 3588.6172 5725.7045 5746.208 4671.4488 6296.801 2474.81 1882.8897 2780.0096 5501.0787 294638217 endoglucanase Carbon Cycling Carbon degradation Cellulose Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 17646.8896 3347.0638 4276.7952 73370.908 5573.6308 4023.306 4023.306 4175.7382 6463.4076 2429.076 5980.0597 16948.157 2800.8486 2462.4606 3793.535 5805.1905 2279.7782 3587.1675 6336.7343 510390 cellobiase Carbon Cycling Carbon degradation Cellulose Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5265.9092 6261.8542 2307.8389 35156.9899 2470.1794 88702657 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 2575.866 2199.8643 8059.6114 65755.9104 5153.6392 3118.2782 3118.2782 18228.8365 2480.2619 3654.2445 1897.4088 39975285 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2331.5857 1943.7342 1943.7342 5936.4341 117188435 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7092.8411 12802.1364 87251639 nirs Nitrogen Denitrification NA Paracoccus sp. R-27041 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 6557.2016 2065.607 3462.1709 2884.3278 3702.4958 8158.6774 7961.2922 6632.8774 4339.0798 2160.4481 4152.2311 2604.9017 6101.8438 3210.716 4128.121 3881.178 6693.515 340365294 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis CNCM I-2494 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 2013.1162 2220.4813 3457.0021 55978091 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1988.5632 4221.7911 1978.9321 8682.315 3617.1403 78630.7869 5275.3304 6075.7927 4755.9619 7713.7127 7713.7127 4448.8895 7715.1726 8365.1667 6899 4811.0681 5906.9774 2561.0429 3726.8673 8337.1701 4262.5905 10017.6905 7294.1814 8813.0253 3705.1691 2761.0654 5286.1787 3601.0247 7869.8888 340514252 nagg Organic Remediation Aromatics Aromatic carboxylic acid Trichoderma reesei QM6a superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma reesei; 5373.8884 3610.4152 3194.458 2820.884 135425.0951 4095.7003 4219.4686 8571.518 5942.8575 18774.7895 7833.4262 4316.1379 3566.7838 2572.9148 6599.166 2334.8409 8823.1202 8243.387 9738.6945 3405.7889 4680.0033 4489.4601 2491.0051 7123.3889 254485532 dmdA Sulfur DMSP degradation NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 11833.8626 5655.239 4492.888 148174.43 3482.2222 2476.861 2476.861 3175.5709 8685.7573 5306.6847 3315.5383 3279.7016 23223.6084 4489.9785 15637.482 7271.6923 16969.2392 3072.3448 3794.9928 4605.9217 90021349 exochitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 10347.2996 3686.1368 342085.9479 2312.8357 2312.8357 116506862 cutinase Carbon Cycling Carbon degradation Cutin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 16248.6772 118472122 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 3402.512 22948.0168 4947.6437 5429.2311 3503.4228 3874.4789 9705.4893 7666.7934 3861.1562 56381473 mer Metal Homeostasis Mercury Detoxification Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 2846.1948 3718.4686 5559.9042 2864.1733 5744.4621 261369037 xyla Carbon Cycling Carbon degradation Hemicellulose Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 2935.1902 5022.1139 15021242 tfda Organic Remediation Aromatics Chlorinated aromatics Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 2312.1765 3478.6966 5733.0317 5316.5959 8812.3798 129401.7533 3057.9255 6007.8582 3273.4705 3916.447 5919.2556 3341.1672 2467.2635 3694.0135 2304.3877 3413163 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. JB1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2545.6631 6255.081 121710012 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7586.9075 21263.8643 7917.0629 242807252 glucoamylase Carbon Cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 2708.4973 2564.5426 5220.5231 2405.198 2644.5302 5643.7192 1749.1774 2585.3095 4027.9548 312795609 ppx Phosphorus Polyphosphate degradation NA Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 5923.2835 5955.2208 4126.7281 214033570 rubisco Carbon Cycling Carbon fixation Calvin cycle Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 3312.5872 3704.5806 2958.6411 5412.5857 4724.2351 8004.7438 9305.0943 4972.3074 5946.0984 2881.8043 2027.255 169643677 mnp Carbon Cycling Carbon degradation Lignin Phlebia sp. MG60 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 2280.9146 3741.9611 2674.3724 2674.3724 169847736 badh Organic Remediation Aromatics Other aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 2226.6564 2915.0583 3239.1723 8107.8299 67688.4146 7447.4973 2042.836 2042.836 7852.968 2759.845 2597.3914 2019.7275 8464.9501 11229.8714 6073.5889 1781.5283 2470.4541 257802836 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Enterococcus gallinarum EG2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus gallinarum; 2447.0368 12033.0983 1675.2526 403069367 nfsa_2 Organic Remediation Aromatics Nitoaromatics Oceanobacillus sp. Ndiop superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus; 3543.4729 4330.3375 16909.1585 2846.3175 2667.0174 332679860 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 2354.5669 6203.636 219675044 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3580.0741 7181.7527 13806.1662 4713.3442 190554.8766 5793.5318 27970.9713 3850.8468 3850.8468 2569.2918 2806.2699 4251.1512 3245.1241 3985.0931 7352.3802 7416.648 359436056 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudoalteromonas sp. BSi20311 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 2025.159 4851.9558 70992975 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 3728.6437 2388.4718 79696.755 4706.9346 27218.6972 3149.2145 3686.2821 381339189 cysI Sulfur Other NA Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 3761.5009 3952.8185 4021.5861 3991.3162 5657.9747 2358.4162 356659324 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1672.7765 3325.2592 54789.6365 3424.5575 3366.5762 5722.1973 3135.7052 3427.918 2753.2071 4727.7272 357936491 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2669.0746 2560.3001 3286.0477 5914.428 6412.422 2192.9313 2841.827 2252.0456 238504717 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 3532.6873 4585.691 7401.1214 4747.0113 343495869 urec Nitrogen Ammonification NA Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2933.3247 8796.8233 3801.3636 17864.3948 10563.6391 3820.7607 4433.8865 4433.8865 6674.4265 19615.3586 8738.1391 456837.2025 8727.1067 12975.8118 8012.9123 8202.065 7220.3121 10630.4325 17394.8329 9081.9608 2443.5434 6903.1582 8926.939 7433.6352 10007.1253 126732561 SoxB Sulfur Sulfur Oxidation NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 2302.7639 3420.6105 3240.7403 57336.1008 3794.5184 4913.8405 5328.6418 99766.7152 2426.7951 6564.1626 12662.7222 7933.0571 6961.6683 2792.2358 2615.8149 10068.3755 3238.6386 118567207 PRI Carbon Cycling Carbon fixation Calvin cycle Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 3697.1683 119385.9137 9819.1292 3393.8516 12560.3442 16971.8936 5574.6262 117949590 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 31045.6239 2987.3357 24007.2488 2274.8901 2274.8901 7433.5096 6054.5008 187603920 terc Metal Homeostasis Tellurium Detoxification Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 4509.7219 3430.4988 73971.1251 6399.0391 8240.3373 4876.8371 6387.4123 9494.9184 4765.5059 7126.5517 3160.6338 4655.1267 145565841 Sir Sulfur sulfite reduction NA Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 2681.5925 4008.6324 71638.2802 4345.9124 9232.437 9232.437 6335.6313 4698.7941 3541.916 4498.3475 2126.8847 3102.5894 6005.4649 2265.53415 9580.8148 4337.0952 4768.8044 1733.78805 7288.3181 160917674 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2537.3012 10642.7715 4609.8686 9638.4507 64271.1162 5042.896 4821.2881 4850.8054 2401.3397 2401.3397 2316.6442 9378.5832 6478.5775 288866739 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 2386.6146 94984832 glucoamylase Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 2554.8793 101050.1389 406718229 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 1866.2087 71383768 nasa Nitrogen Assimilatory N reduction NA Tolypothrix sp. PCC 7101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Microchaetaceae;genus:Tolypothrix; 9205.7514 5034.5045 2485.5447 6170.5056 2553.9006 2553.9006 12800.0998 9588.5545 3005.5158 5389.8354 5240.7162 9727.6602 14065.6292 3032.8098 4305.2379 4246.5857 121301849 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 3233.0713 4825.8136 5226.8504 3780.6255 3529.9839 3471.935 255502795 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3013.3926 2854.892 2161.1337 3357.5945 3993.186 6826.3261 3750.672 5024.6887 162413.052 6555.0329 2679.875 10853.7083 8004.7958 6921.0276 2905.3099 3931.6655 3245.2884 2281.4111 6670.4163 260773714 terc Metal Homeostasis Tellurium Detoxification Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 1951.939 55568.4615 4654.9052 7845.5368 16124.8864 343386731 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Brachyspira intermedia PWS/A superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira intermedia; 3404.4992 2887.0851 3655.8617 2607.8018 5944.6642 3097.1957 4440.0998 2301.1559 5375.3386 5314.9108 2517.9517 3758.2444 66045437 urec Nitrogen Ammonification NA Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 4448.0712 63914.2198 7110.4785 7110.4785 7503.5238 746790.4148 5650.4969 3010.5253 4306.316 2572.1056 343955636 amyA Carbon Cycling Carbon degradation Starch Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 6272.264 4545.915 2818.0538 7805.5569 15181.2034 4889.5305 4889.5305 6059.3248 26627.9139 2505.2986 55029.9202 9919.3465 10451.1476 24373742 ppx Phosphorus Polyphosphate degradation NA Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 8597.014 7152049 cellobiase Carbon Cycling Carbon degradation Cellulose Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 5190.7772 6270.7923 4998.8521 6065.4763 9617.5524 48185.6615 4059.8015 5639.9953 329898518 tfda Organic Remediation Aromatics Chlorinated aromatics gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2273.9026 21525.9686 3232.0789 12379.5838 3869.2119 224537913 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 5007.814 15137.2753 4101.869 4687.4608 5688.472 5688.472 6012.1241 13262.3924 3513.9752 18467.2426 5316.2003 2090.2148 3884.5582 111325.3294 384100604 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 5412.1634 5978.4452 5978.4452 2603.7719 1748.7251 210069207 p450aro Organic Remediation Aromatics polycyclic aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 7628.2722 16876.2288 2576.3448 4742.4841 5242.3562 14486.1053 5061.2253 15711.3709 157837434 nagg Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter sp. HS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter; 10388.1998 6242.75 255714358 ppx Phosphorus Polyphosphate degradation NA Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 1994.9719 2325.9459 3091.8303 8976.2735 1817.9621 211958748 pcpb Organic Remediation Herbicides related compound NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 2223.3758 316953278 nitrilase Organic Remediation Aromatics Other aromatics Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 2168.1853 3065.2641 10718.3219 7342.63 2393.0928 2393.0928 5821.2855 4141.4054 3453.0828 7312.4242 5040.6792 9278.8686 6227.3833 6846.1226 2476.4896 3179.6049 2976.4135 376315858 ppx Phosphorus Polyphosphate degradation NA uncultured Flavobacteriia bacterium superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia; 17180.7401 3072.6913 3982.5731 3904.976 3192.5751 74304.8425 4573.8926 5816.2393 5563.3336 3750.073 3887.0995 5620.5096 2100.5152 3714.1985 7121.2038 2397.6962 2683.0785 2949.7458 2456.6628 67154156 one_ring_12diox Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 2532.96 3302.5878 3775.1476 9937.4403 68700.9455 4558.1988 5862.5292 4155.2528 6731.9894 4982.9598 4432.0261 2648.8703 7054.8402 2619.7844 12125.5807 6196.1445 6529.4009 2746.6016 3518.6914 5280.0193 4109.9016 8723.7536 71017797 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 3955.2123 5098.9865 150030637 exaa(moxf) Organic Remediation Chlorinated solvents NA Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 2811.0908 5326.9087 20298.666 10222.244 8258.296 2718.5667 7096.4212 347523589 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 2103.0641 9329.6531 4439.3935 5043.9688 8422.5599 16023.9673 2015.6599 2893.4627 3775.5184 70983253 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 2639.7271 9231.1396 7033.8364 105736.4139 8959.7268 4811.4186 11805.7167 5414.8293 2447.6796 2807.2864 218247514 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 8801 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2090.2175 367018916 glx Carbon Cycling Carbon degradation Lignin Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 14663.2137 170134500 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 1868.0991 2658.2881 6848.1713 5072.6375 67978.7691 2971.7901 8358.6533 75878.2706 4135.6847 4493.7012 3408.0114 9125.8899 2765.3865 13293.4078 6316.172 9448.142 3487.3484 4395.5508 3321.4813 7598.3426 257203376 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis L1-82 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 2253.8888 60100857 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1943.0859 3539.7304 3581.9981 32557.8913 4837.9295 3890.5946 3649.1223 6168.3639 11206.3677 5284.9887 1811.7067 2193.2275 303256294 ppx Phosphorus Polyphosphate degradation NA Burkholderiales bacterium 1_1_47 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 6861.2142 53804283 arylest Organic Remediation Aromatics Other aromatics Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 9840.6481 238849664 atza Organic Remediation Herbicides related compound NA Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 4380.8904 3201.8154 303325478 b_lactamase_b Virulence Antibiotic resistance Degradation Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 2073.5749 4527.9054 4096.2635 2942.9691 9704.153 3937.8006 55891.7305 5646.3967 9332.0586 4981.1987 4981.1987 2777.9584 6619.9568 5001.0767 5843.3925 7050.709 4797.0803 2488.614 2601.9823 6612.3317 3017.215 10087.3541 5173.4343 5455.7476 2569.5211 4009.8785 4168.0203 2498.5591 29261.8596 327441748 bphF1 Organic Remediation Aromatics Polycyclic aromatics Solibacillus silvestris StLB046 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Solibacillus;species:Solibacillus silvestris; 5053.5915 3988.8838 36244728 phospholipase_B_fungi virulence degradation NA Aspergillus fumigatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya; 2052.4579 5623.7116 3664.7815 4696.359 4700.5334 4114.3479 5233.7716 1587.6063 3637.4539 2106.687 119509962 TIM Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 12636.1752 59185.17 2122.1745 2122.1745 86572032 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2050.2906 2527.1317 7032.0134 6358.0612 3570.8479 4967.746 2774.3931 6478.2442 3633.7608 5210.883 6838.0013 3305.8381 5856.9403 2113.0501 9377.2025 5782.3753 7075.6475 1937.0096 3255.3422 3789.9888 387844361 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 3513.2102 3072.1738 65998.3041 4421.9745 6101.7011 7285.803 2244.1352 4461.7893 5378.759 2404.5592 3273.7513 2844.1057 4935.2745 229611308 alginase Carbon Cycling Carbon degradation Alginate uncultured bacterium superkingdom:Bacteria; 5125.9823 306488421 nirs Nitrogen Denitrification NA uncultured organism 4613.1679 10525.8733 3089.3813 148978109 atzb Organic Remediation Herbicides related compound NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 2224.0436 3727.2209 3534.3704 69216.3497 4788.1748 3729.4569 3641.5257 2187.7546 2401.38 2666.5646 2053.8134 193161104 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4376.8215 18727.5609 49530417 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3238.7575 5106.6482 4081.2114 3384.7159 1807.2363 224579028 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2825.9737 5307.7348 7502.0111 89950949 chitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 37299.349 3932.7211 2874.9728 8338.1521 30959.9448 3677.6279 5602.6997 4741.6047 3020.9676 6596.5559 2227.477 4132.698 32843.8049 7831.4765 5196.2777 68747.9744 3532.2126 2839.7229 11344.7195 328525126 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 3594.5353 13476748 ppx Phosphorus Polyphosphate degradation NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 22860.2085 2226.5415 12768.1275 4649.2715 124531.8402 5782.315 2606.8814 4192.1983 193212148 ppx Phosphorus Polyphosphate degradation NA Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 301828.8 2614.7481 6881.1563 3095.5998 3095.5998 6355.2876 6608.1865 284016968 inulinase Carbon Cycling Carbon degradation Inulin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 5847.4646 5415.9031 62149156 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3332.9755 3949.6972 2167.8384 4699.8911 4377.5884 315249864 mer Metal Homeostasis Mercury Detoxification Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 2738.3096 11504.7841 3964.8885 3863.3995 5864.7476 4605.9613 3238.7597 365179225 PRI Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4268.2166 7890.3733 10296.7613 2763.1234 5893.2725 4288.7964 7619.6963 4922.8891 2457.5985 47078054 xylxy Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. ST41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2378.571 3808.7167 2375.5696 607064.4169 4471.5806 2689.3639 8060.4061 7631.2231 4850.4402 2763.2027 8023.0734 6775.4421 5517.7339 4618.6514 3585.0251 3417.14 3974.7503 115551736 beta_agarase Carbon Cycling Carbon degradation Agar Vibrio sp. PO-303 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 16983.4232 176967.8175 6962.5533 3802.7716 3802.7716 4134.2975 2525.4208 3432.7272 36212.0502 5758.3338 19290.8606 3661 5596.0458 14898.7553 2762.3187 7453.8471 21673846 SoxA Sulfur Sulfur Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 3932.5146 2139.2543 2561.6911 104305.8659 3547.7267 5067.5786 2330.8416 2330.8416 4779.7089 3900.2521 8997.4718 3197.4169 157911978 nasa Nitrogen Assimilatory N reduction NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 28047.7693 4561.8155 8756.4062 315645868 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 3123.7007 2551.1288 2936.9721 6528.3242 2358.3832 14491.7461 7683.16 5472.7908 2184.9611 3137.8803 8117.925 307586988 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3061.5527 3514.9322 2364.7439 4747.3888 6674.0953 6414.4504 6609.7567 4055.9129 3747.8157 12406.5434 184196547 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 2584.2572 3216.7961 7682.5418 1823.9075 2095.285 118442732 cda Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2802.3995 11564.9224 4662.5293 302407594 axe Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 4711.4287 5652.4568 4952.8188 72749.1115 4719.9969 5016.9193 3477.9847 11425.051 4479.0091 5539.7805 7481.033 7616.4187 5080.4461 3037.6197 8189.771 2882.6736 15951.5518 7333.5045 3291.3933 4785.8587 5270.8501 6272.2513 5956.7929 306533027 nira Nitrogen Assimilatory N reduction NA Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 9130.8925 261367165 cda Carbon Cycling Carbon degradation Starch Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 2232.7075 5120.7898 4646.2435 5995.6329 3029.3628 6636.595 7140.9855 3399.9557 8982.9185 8929.8812 6474.3864 9085.1744 10311.5006 2881.6608 4911.8472 10859.2309 3515.7477 22391.4731 8353.4174 8394.5461 3915.2695 5209.3523 4141.7532 8538.2828 291616311 cueo Metal Homeostasis Copper Detoxification Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 1997.1203 65640.3344 4981.4364 4316.8781 5730.1493 4977.3025 4546.8604 2496.4671 5252.6838 2532.0453 25281.5862 60476314 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 91669.4063 5863.5065 2451.8457 4015.5792 5778.4941 90915.8557 6225.9942 3629.3465 8047.8802 6580.0619 8578.8594 8541.9531 7682.4837 2699.2207 3010.6653 5609.3768 5262.0774 10610.4312 5611.5142 7418.9035 3188.8393 3943.3473 5947.9476 2818.9179 6889.6143 262219553 PRK Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 9035.894 374296316 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 2303.6113 2892.9536 2624.5689 10007.7203 218519381 PRI Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 3293.9827 3521.0237 5018.4354 2352.2815 4162.5956 4472.6473 299831770 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3120.3327 2812.882 2667.2901 66267.1222 5236.3791 2254.6841 2462.7883 300727911 amyA Carbon Cycling Carbon degradation Starch Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 3053.8784 4792.6217 2504.6299 3775.7204 25825.675 2583.9008 5599.0181 3810.4145 6174.5048 2119.8808 2578.7177 2892.1178 4198.0641 2649.1589 4779.4184 311886922 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 9293.3038 13393.1215 7298.4531 2951.0035 11648.8379 2669.0937 2719.7781 12899.6162 17385534 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12616.2304 3951.9746 2904.1643 1527138.3763 71383927 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2251.3896 1999.2176 317130476 amyA Carbon Cycling Carbon degradation Starch Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 4869.9454 342825555 amyA Carbon Cycling Carbon degradation Starch Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2350.3851 3106.4509 2413.7559 169615811 ppx Phosphorus Polyphosphate degradation NA Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 4791.5601 2056.9243 78009.5877 7892.8862 4526.9303 4072.1832 4713.379 4985.9526 2325.6365 2390.2165 5610.4172 2001.1856 9044.9446 5420.8227 2415.2911 2445.1044 3088.8181 2070.9377 358639815 FBPase Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 2696.843 162568571 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 7916.3078 4631.0025 377578841 amyA Carbon Cycling Carbon degradation Starch Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 15305.3329 5114.1241 1933.6994 119481743 cutinase Carbon Cycling Carbon degradation Cutin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 1963.4463 3042.3117 4535.4319 5124.232 2594.5438 5173.0555 5749.9511 5721.3868 3171.6985 4057.9201 256795144 nbac Organic Remediation Aromatics Nitoaromatics Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 2493.524 3294.5961 65514.1589 3651.4032 4511.082 7024.9527 5128.6849 4313.5973 5748.8905 2554.6852 5458.6091 5491.8753 8422.6215 5204.1704 7019.6292 1969.0316 2820.6395 57341404 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 5556.1921 6426.1189 315645249 cda Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 2390.4293 25117.1084 10500.4666 77385098 gdh Nitrogen Ammonification NA Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3100.8629 2546.0987 7497.0365 4265.9384 2711.9239 3263.9959 3101.9569 3390.1671 383351314 amyA Carbon Cycling Carbon degradation Starch Streptococcus mitis SK575 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mitis; 1775.7357 407366009 nitro Organic Remediation Others NA Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 6961.8015 2518.3528 313205.1223 3774.1499 3919.1318 2885.6824 2885.6824 8447.9845 4411.6945 5029.1644 6429.4965 37084.289 63588.6921 7605.6591 18007.2797 2960.5195 3349.8003 323498560 amyA Carbon Cycling Carbon degradation Starch Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 3373.5661 8483.4971 7706.5627 6706.6154 22053.8241 2652.2464 4635.3197 4084.5307 2187.8073 2187.8073 7493.0091 7604.3626 4668.1627 19737.5883 7196.8411 7960.7468 2809.1711 3337.7824 6787.3139 12327.7629 8181.415 6959.7521 17575.2068 3628.4664 3749.1828 8634.0068 7229178 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium ORI-4 superkingdom:Bacteria; 1845.1929 9212.2876 26086.4281 49797.3058 3588.0639 5126.5433 5126.5433 388543239 cmci Organic Remediation Aromatics Other aromatics Pseudomonas sp. M47T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4376.82 2970.3656 6314.1169 6184.9016 10110.1416 65287.5177 4925.4169 3462.5534 3462.5534 7709.4785 3284.78 6286.2067 6020.4756 7294.082 3437.1347 5650.6264 4773.5297 32385.7382 380086169 terc Metal Homeostasis Tellurium Detoxification Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 4030.768 2335.9754 14363.6272 10536.6763 15957.2796 5663.9427 121303.2694 9837.8308 11586.3658 2278.0419 2278.0419 7237.4342 7559.4506 5913.1413 13914.6723 3300.304 14749.3573 6029.93 4388.2272 16263.4195 76932.175 18772.1119 5107.0796 6807.8849 8235.8512 6723.2678 223716.4752 390193544 ppx Phosphorus Polyphosphate degradation NA Sulfurospirillum barnesii SES-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum;species:Sulfurospirillum barnesii; 5029.1492 2258536.1237 70991503 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 3745.998 2672.1479 5455.2368 10099.6204 4827.0839 28823.5394 377564548 pcag Organic Remediation Aromatics Other aromatics Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 2909.9521 5423.6053 4803.5479 5458.9289 5458.9289 6469.1416 9811.168 2693.0127 2537.4316 13369.8286 3572.6311 3371.6384 70672915 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2416.8793 5192.5925 196200199 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 21894.7676 7486.8603 9981.1638 119986.3487 6423.8633 2307.9567 2307.9567 6450.6782 6846.8505 5635.2079 4688.8685 2995.7881 13360.7511 134058538 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3357.9932 101406.673 2601.0563 7824.4533 3506.7637 6433.4479 5426.4757 343776655 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 2762.4008 4157.0545 6415.5933 6876.7061 10090.9838 3518.8063 81190.1792 6715.1212 8764.1198 18391.653 6930.3526 6930.3526 3873.3266 10576.9732 8528.7276 14153.0147 9953.2503 11141.8394 5101.3981 6959.7934 12468.4163 4959.67 12103.7746 10204.1637 13679.504 3369.5068 5623.2034 9301.2618 4703.1384 8731.318 302778038 chitinase Carbon Cycling Carbon degradation Chitin Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 2026.9727 4493.4102 332977331 ppx Phosphorus Polyphosphate degradation NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 2891.2295 3491.1092 4405.0834 2397.4374 3273.388 391307078 phn Organic Remediation Herbicides related compound NA Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 39796.8345 4144.5162 9410.7866 6921.2051 2907.8978 5682.6422 14481.6183 52517.922 4134.7021 7169.452 6245.6883 3569.9513 47331.0774 8633.2845 343954338 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 1822.6484 66025.2853 6828.3174 3159.7297 3538.8406 4108.6262 4577.8871 2109.8131 7168.0122 2120.2982 2421.2315 326635599 phytase Phosphorus Phytic acid hydrolysis NA Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 24143.2024 7159.897 6137.811 73177.5259 3225.1294 3225.1294 6638.258 4446.7234 2246.4165 8389.2779 4786.4588 124399388 alpha_tubulin_ciliophora Other Phylogenetic NA Paramecium tetraurelia superkingdom:Eukaryota;class:Oligohymenophorea;order:Peniculida;family:Parameciidae;genus:Paramecium; 2781.023 333927606 chitinase Carbon Cycling Carbon degradation Chitin Serratia sp. AS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 4293.0123 4508.3056 3855.5912 4490.2354 8202.4067 4473.8169 11116.0946 8697.2421 5549.285 10384.5395 2924.9998 4695.0227 7340.7904 1948.1347 3815.3665 3138.4848 2006.0449 9742.0451 28974756 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6781.2238 4270.478 4345.2578 3458.8742 2203.3168 334145441 nitrilase Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 6969.5146 4541.2753 16013.6858 4407.3392 2161.8281 2161.8281 2792.7515 10436.7926 3817.7628 2448.8156 3145.5819 5947.6415 6111.9126 3014.5144 3200.0123 4549.8557 17166.4442 291421061 dehh Organic Remediation Chlorinated solvents NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 2235.7025 77923.5708 3560.8776 3560.8776 9553.7612 13379.5557 14041.886 14729.0247 7795.2743 6343.7069 2453.3418 19548131 nirs Nitrogen Denitrification NA Azoarcus toluvorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 3406.1908 2665.5345 6594.2531 4515.4914 3705.7166 7864.9269 6674.8508 12924.1685 3612.4128 6297.0564 398212908 poba Organic Remediation Aromatics Aromatic carboxylic acid Phyllobacterium sp. YR531 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Phyllobacterium; 2124.7451 22576.56 111173.1227 2709.402 2709.402 4765.842 3435.2539 3115.5376 4199.0515 221728823 catb Organic Remediation Aromatics BTEX and related aromatics Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 3126.4068 13939.3919 4390.1976 3496.6377 10391.7496 2268.1638 2268.1638 7068.1451 3879.2343 3004.6204 4241.5376 5621.3706 24954.0562 4203.1597 10577.0067 4193.0032 2645.0715 298232523 mer Metal Homeostasis Mercury Detoxification 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 3115.097 2728.7008 3760.4015 3386.4137 4860.9796 126704352 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 1863.8449 2012.4044 2012.4044 5179.5518 2497.4728 7658.5364 2753.4699 4897.4975 28850865 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 5810.1857 8387.0685 2608.9465 2454.5012 339328679 alkh Organic Remediation Other Hydrocarbons NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 2988.0584 326199079 pcpe Organic Remediation Herbicides related compound NA Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 7289.1818 2220.5756 3451.8387 8234.3862 3832.0861 5439.356 3236.9611 3236.9611 7393.7548 4166.3676 6923.779 2146.8202 4992.4176 58855.6104 3494.5259 15877.704 7932.6322 7278.7198 3434.4366 3006.0416 4753.812 14419.0443 6036.4114 70673027 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3289.9034 7727.2223 5054.3673 4528.4972 8412.5642 209344.3611 7248.1299 13603.7069 5832.2751 8805.6359 11208.3899 4258.4114 3900.3225 84756.8024 8048.5033 40592.0052 6315.674 36122.5009 5082.6702 4912.7652 4700.2943 2648.2287 378763779 poba Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4558.8378 2477.9405 2913.0662 3193.5769 7877.3777 4588.3644 9102.5454 7856.6125 4896.3621 5115.453 3040.9915 3570.6599 3503.1923 4627.2224 161985632 amyA Carbon Cycling Carbon degradation Starch Acholeplasma laidlawii PG-8A superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Acholeplasmatales;family:Acholeplasmataceae;genus:Acholeplasma;species:Acholeplasma laidlawii; 4344.0355 3478.9717 2001.669 5728.6952 3623.6448 3623.6448 9528.9471 4092.4061 14381.8089 5991.9771 4449.7873 7110.9743 2339.841 5391.5969 3114.9904 7312.8883 4930.087 5722.4857 5148.1214 6541.5752 3625.2195 2504.7499 25626.8622 344201210 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 3889.1374 18313.1067 57256.5324 5394.6275 5279.9158 5279.9158 2752.9092 7881.9528 5562.9988 4503.7768 8179.0857 4528.7074 3663.5128 8026.5127 7660.4217 9273.8134 2281.3291 3885.248 44184.8411 209516652 ben_bcla virulence NA NA Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2273.5607 2246.7802 10295.5965 3037.8338 261338283 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 1712.809 2889.5321 1909.798 2338.682 2338.682 3776.1768 4744.0455 3955.9433 1906.1831 2853.4033 148273952 terc Metal Homeostasis Tellurium Detoxification Clavibacter michiganensis subsp. michiganensis NCPPB 382 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 9785.4993 6297.0846 3072.3044 6070.9629 6234.5482 108227.5223 18995.1221 11327.4282 6811.3286 3424.7345 3424.7345 3139.3333 10518.0911 5855.7158 7568.1899 5224.2659 2225.0615 12956.5093 8705.4211 16991.5864 11544.8574 4930.8508 7382.9937 3019.9771 4874.6803 5504.3323 2825.7775 4972287 chitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 21396.4295 2141.4912 2237.797 69975.0042 81270.0769 5541.9575 14629.9766 2307.6737 6470.7211 7194.2827 2457.2661 10173210 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 3122.3899 4153.7953 3135.0173 13249565 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3894.3512 797936.6966 7554.177 8333.8959 3025.2906 4301.9962 2792.0737 322702692 cpnb Organic Remediation Other Hydrocarbons NA Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 4717.2604 2734.8678 2742.3918 7075.3717 12998.8763 2811.1264 10128.2875 5063.2113 5474.2694 3029.6719 3011.0269 2850.5865 188533197 ppk Phosphorus Polyphosphate synthesis NA Erwinia tasmaniensis Et1/99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia tasmaniensis; 4139.0412 2864.7619 4792.4991 17593.8959 2484.5817 5076.3833 3860.0882 3073.5153 8828.3586 150839214 cellobiase Carbon Cycling Carbon degradation Cellulose Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 2835.0056 3623.5475 3095.9695 1902.704 192764176 nifh Nitrogen Nitrogen fixation NA uncultured archaeon superkingdom:Archaea; 3864.8378 2461.695 5395.7896 58414.4954 4562.8335 6024.024 2872.5397 6496.9734 4860.8045 4755.5771 6761.9579 2514.5786 7963.0783 2608.9304 6770.7453 2703.0786 3687.2216 4030.7802 2381.5214 6263.6322 125623598 amyA Carbon Cycling Carbon degradation Starch Lactococcus lactis subsp. cremoris MG1363 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 14655.2791 2402.4733 290886051 ppx Phosphorus Polyphosphate degradation NA Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 2137.0689 158333369 mer Metal Homeostasis Mercury Detoxification Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 2199.3219 4067.1769 4242.257 295666169 cellobiase Carbon Cycling Carbon degradation Cellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 16363.1928 6968226 napa Nitrogen Dissimilatory N reduction NA Campylobacter jejuni subsp. jejuni NCTC 11168 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 22834.3843 300761780 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 2007.7577 3481.4782 70266.1166 4106.9965 8389.686 4115.1636 6052.2007 5308.8089 8016.6734 6588.67 1970.6612 2548.9096 3034.2915 6703.3988 312196159 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3513.6879 2637.0667 6531.1962 10437.7173 4617.2537 7242.9405 3785.3359 7619.4789 4974.8659 6994.5835 1889.4538 3544.6692 158140330 arra Metal Homeostasis Arsenic Detoxification Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 416845.4315 5749.7297 5628.5112 3861.0479 3755.9043 93442.9514 5507.0882 11638.3275 2461.9403 2461.9403 851454.8679 2516.1841 3799.1242 181283.9528 25884.7715 8223.1531 4505.841 6415.9727 5271.7061 4273.4486 7138.2784 89145070 ppk Phosphorus Polyphosphate synthesis NA Microbacterium dextranolyticum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 4000.8942 10963.9301 10963.9301 35821.9107 4227.5782 5793.0131 5680.2646 300726083 RgaE Carbon Cycling Carbon degradation Pectin Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 1873.6674 3395.7367 2105.205 3666.2639 1740.4516 2423.4773 2774.0071 378730669 arsm Metal Homeostasis Arsenic Detoxification Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 5093.9568 9312.0567 12656.1468 4883.2054 7772.0191 2843.8007 50875393 mer Metal Homeostasis Mercury Detoxification Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 4252.4858 5156.9954 322702414 phenol_oxidase Carbon Cycling Carbon degradation Lignin Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 12005.6409 3931.4164 4016.8198 5028.1995 2374.1401 2278.8388 1619.6851 3518.0603 3288.9801 8678.7425 6978931 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces chartreusis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3452.1199 5793.4294 6700.244 2223.9 5242.7806 46196568 ppx Phosphorus Polyphosphate degradation NA Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 2056.5207 3860.6068 3103.5679 4093.7171 3084.3943 2949.0778 2451.0293 377527560 cysJ Sulfur Reduction NA Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 4328.7991 3194.0908 3622.6387 57982.0206 3432.3674 6240.5132 17515.1546 4032.3201 3448.5254 5756.8235 4137.0868 6296.5249 9987.4948 3984.5919 5228.936 2232.9886 3286.7604 4217.3266 2795.9382 4710.528 364505611 hzsa Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 2202.3218 299772640 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 2939.8225 15528.723 5429.8777 4630.8435 3361.3034 114190747 nirk Nitrogen Denitrification NA Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 2796.2044 2739.6133 160884637 endoglucanase Carbon Cycling Carbon degradation Cellulose Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 2208.7193 3043.85 4831.9021 11568.0385 5415.6014 10087.6297 9321.6776 5373.288 4155.7053 329903998 ppx Phosphorus Polyphosphate degradation NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 3823.2281 3782.9581 7090.6417 3781.8121 8875.3637 3108.2314 336934.1299 2433.54 4492.8404 324025526 atzb Organic Remediation Herbicides related compound NA Sphaerochaeta globus str. Buddy superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta globosa; 20280.4543 7034.2857 30849.6824 7405.185 30873.7483 7299.1306 2422.2324 12119.1995 2434.2615 320150366 glucoamylase Carbon Cycling Carbon degradation Starch Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 2518.9445 333808261 urec Nitrogen Ammonification NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 5154.8887 10234.8337 10727.8183 17140.8125 22040.4354 6314.1683 2181.7122 5086.4127 410662483 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. CF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 5627.3904 3102.7323 2819.7106 4160.6615 59892800 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 2508.9477 6537.4052 300545461 amyA Carbon Cycling Carbon degradation Starch Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 2612.4032 4199.5282 105378.0274 3223.6456 3223.6456 4389.0151 5629.8994 4221.468 26209.6045 244934.2518 7973.2533 2070.3812 5716.9145 68347101 nirk Nitrogen Denitrification NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 2689.8419 75687.2234 2710.5939 4041.8229 2316.9835 6225.7783 2272.3892 4749.7176 5012.965 2153.7619 3110.9885 6257.7033 357203032 amyA Carbon Cycling Carbon degradation Starch Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4506.383 94471175 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2921.4104 2290.5364 376005618 arsc Metal Homeostasis Arsenic Detoxification Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 4025.5969 3600.1414 4676.8753 6604.7823 5036.5948 5660.0452 2333.7616 298242897 phn Organic Remediation Herbicides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 3403.2557 146157102 mannanase Carbon Cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 3488.1549 3188.0752 4785.0855 112298.3205 4160.1679 3279.3002 5929.8288 4657.5395 7484.7148 2345.0663 2718.8196 18722.1601 2108.8252 12874.3107 6215.6922 6108.8187 2282.1703 2750.9429 8101.2649 389846907 alkk Organic Remediation Others NA Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 5227.5355 2433.0355 69129.9354 4180.0649 3482.9312 3179.1317 3068.7589 3068.7589 6826.4679 5612.5451 3083.0546 5917.7976 5327.516 2263.0051 6493.2009 4188.0084 6508.2038 5240.9176 237499684 amyA Carbon Cycling Carbon degradation Starch Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 141225.1388 3903.625 150840910 dmsa Organic Remediation Others NA Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 2934.0046 3136.5536 19788.497 298551275 amyA Carbon Cycling Carbon degradation Starch Thermoactinomyces vulgaris superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Thermoactinomyces; 6258.1997 5277.8672 60666.2207 5641.7743 4401.4365 6538.3174 2486.9248 2486.9248 5587.8932 29548.1699 2673.5264 6986.7302 2630.0811 12285.1925 6928.1786 7283.0713 2424.9951 4931.465 3484.8365 387773033 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus parahaemolyticus HK385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parahaemolyticus; 11244.8027 41687962 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter; 4817.7464 3334.3938 6521.4261 4452.5884 76574825 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas cichorii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2795.8694 59273.659 5107.0552 81195.2689 302684635 lactase_fungi Carbon Cycling Carbon degradation Lactose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3967.6612 3856.8037 57145.2766 4288.3487 2616.866 10432.2234 4280.0134 5836.6761 6011.637 6470.9913 4522.9247 6603.6962 10430.1426 4343.3996 6733.0764 2112.1923 3296.6918 6642.6036 3036.674 332666325 pme Carbon Cycling Carbon degradation Pectin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 3706.9272 2771.6474 2443.0092 3280.6398 93819.3528 4583.0171 5829.2037 2284.6911 2284.6911 3379.6623 5264.925 9409.2529 5748.4222 8300.5143 3126.1585 8769.8551 3467.4723 10538.1316 6622.6868 5259.3574 2559.4772 3431.3076 4017.937 2139.6027 6926.0489 398874585 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3886.0657 3919.7983 68816.1832 1898.37 1898.37 3761.9487 6647.2248 32973.0704 3729.6132 5888.849 12507.8982 4478.5826 2320.9986 3881.1749 2811.073 26641.4884 330428807 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 2648.4403 2324.6697 2655.6038 5445.9972 4245.2918 2661.5311 76454.9834 7453.1615 4574.3606 7271.3495 4244.5832 4359.5972 6207.288 6984.3518 2594.3284 10470.6081 5929.3497 7649.6312 2763.7885 3989.6974 3237.362 10654.4533 354584462 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 3523.3175 6123.7604 3173.9129 4564.9351 4860.3228 2764.5442 134316.2175 7896.0269 8739.7838 2803.4944 2803.4944 3817.4867 9230.882 5231.5267 8042.4916 5603.1152 6806.2141 2536.5151 4967.86 12166.112 4235.9528 16463.3668 9908.8699 7836.6606 4223.9184 4907.4732 6020.2412 3706.7088 10758.5563 94537147 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas schubertii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 4510.864 392947475 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 1764.308 347527110 tfda Organic Remediation Aromatics Chlorinated aromatics Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 2132.4367 21567.9554 87281014 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 755442.0611 5491.7546 89714.6742 5945.8608 4123.0146 3924.9901 6604.4595 5328.0038 7456.9568 4834.3172 3630.1155 6400.1703 6282.9206 9259.55 4757.1547 6063.8665 3106.6735 4371.4044 5454.8303 2790.068 7268.2233 76803735 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 2644.5263 2829.7575 3471.2205 4686.1029 8357.944 3964.5448 2084.6961 4010.147 3881.9 15150.1996 5344.6802 3747.4144 333940564 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 3098.2591 2562.4649 3713.3141 5612.1845 4042.6546 7453.5554 4864.8279 1957.4823 4702.0802 2818.3148 3930.9446 3267.3249 2505.9043 237721239 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 2215.0156 9901.6631 8716.1627 4661.2663 334094589 nifh Nitrogen Nitrogen fixation NA Sinorhizobium meliloti AK83 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 3042.5565 8232.9155 296282701 amyA Carbon Cycling Carbon degradation Starch Citromicrobium bathyomarinum JL354 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium;species:Citromicrobium bathyomarinum; 2740.1074 7116.0327 315467969 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 22862.6903 3044.1744 4788.0454 7500.6261 257052312 ophc Organic Remediation Aromatics Aromatic carboxylic acid Halorhabdus utahensis DSM 12940 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus utahensis; 2717.7451 21222837 vgb Virulence Antibiotic resistance Degradation Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 3446.7173 4794.039 3614.1492 5142.227 3950.4835 1929.101 1929.101 6667.1642 5087.3378 26650.952 6701.7536 6213.6445 7467.8985 4174.5253 7116.2068 2578.672 4987.4952 3453.2 3279.3685 336393072 amyA Carbon Cycling Carbon degradation Starch Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 7401.952 5480.3162 64103.6153 2636.6745 376009408 B_lactamase_A Virulence Antibiotic resistance Degradation Lactobacillus plantarum subsp. plantarum NC8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 8939.0232 2539.9237 2829.6776 71091.3645 3805.2244 2199.1122 2199.1122 2650.2879 7322.9907 4090.0304 6313.9953 6812.9898 3722.3244 77812117 terc Metal Homeostasis Tellurium Detoxification Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 44979.7792 357011565 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 29679.9213 17559.9892 154150685 nifh Nitrogen Nitrogen fixation NA Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;genus:Methanoregula;species:Methanoregula boonei; 6031.4345 6336.4404 5574.9796 5258.7167 6782.2397 70996502 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 2247.932 57225299 rd Organic Remediation Chlorinated solvents NA Dehalococcoides ethenogenes 195 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides;species:Dehalococcoides ethenogenes; 2406.5094 3304.7908 56728.3773 10832.3349 10832.3349 10364.0312 4790.367 4330.3865 4858.7899 21709.9089 2329.5734 118424428 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2520.6738 6753.0292 5226.8352 4852.0696 138361.1437 24348466 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella oneidensis MR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella oneidensis; 3223.0061 3189.51 4735.0854 81079.3055 4910.758 11750.6703 4968.595 17722.5485 4997.2905 1696.8107 2467.0536 3041.8828 2994.4605 7596.1496 327440659 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Solibacillus silvestris StLB046 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Solibacillus;species:Solibacillus silvestris; 2861.1809 2302.1332 558313 rgl Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3602.6041 4418.4719 2612.1351 2959.9566 91417.6326 4540.2087 2958.3717 7614.0907 5815.4591 5549.0316 2915.0515 4042.6512 10392.33175 5554.9409 14689.0589 6073.8305 7480.9445 3909.187 2784.9018 3116.1605 6719.7148 22900882 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2609.9399 4161.0853 5775.055 337285164 amyA Carbon Cycling Carbon degradation Starch Pyrococcus yayanosii CH1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus yayanosii; 4910.4252 7325.5857 6921.6789 3206.5517 15612976 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 4552.0164 2871.6502 3776.4538 4356.9542 3111.1159 104322.3593 4822.4843 5045.265 4671.1774 2317.4071 2317.4071 3819.9403 9353.784 6619.9502 6793.8396 7289.9041 4138.4836 2615.3435 3599.3476 9293.6197 11437.486 5859.4324 8489.1659 2760.626 4654.7978 4111.3245 2427.496 125475.107 109290327 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2872.1718 3498.5092 68166.2022 3230.1069 2676.5182 7845.4532 3867.4371 3669.8165 6456.5997 8177.1099 4282.9739 5983.0513 2350.6082 3080.0727 4964.1904 332679664 xylanase Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 3968.2645 3420.6468 211999454 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Schizosaccharomyces japonicus yFS275 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces;species:Schizosaccharomyces japonicus; 3950.2228 2412.2755 6966.8924 56836.5657 7911.8765 5739.6421 7208.3554 41737.4516 41737.4516 6699.598 2485.7547 1898.3433 3927.8504 163758208 urec Nitrogen Ammonification NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 2796.6401 4567.8309 6426.6668 4061803.301 7640.4587 9823.163 4136.5845 2321.7286 11071.5773 7249.8717 167842054 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 4648.7648 4415.3043 3687.1088 3622.4416 2418.722 6143.2852 9123.1202 5371.3801 2367.3761 115520663 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3713.4002 3654.2461 7256.4716 3932.1659 3851.7167 5589.3751 2436.7585 2944.3647 383453854 vgb Virulence Antibiotic resistance Degradation Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 2128.7512 3011.1041 3264.6818 10030.9847 4847.3846 2404.9278 2983.8189 4529862 nifh Nitrogen Nitrogen fixation NA Desulfonema limicola superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfonema; 2554.1395 62761.5183 6687.0459 6616.4426 4870.6797 2653.673 6057.7707 6077.3746 6660.1676 3743.0297 3597.1959 3423.7434 168700340 amyA Carbon Cycling Carbon degradation Starch Gemmata obscuriglobus UQM 2246 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Gemmata;species:Gemmata obscuriglobus; 2919.6631 2758.9408 55550.8323 8839.3553 4408.6998 2695.8694 2695.8694 5307.1007 3540.5364 9238.9977 2267.9076 6307.8452 2661.9128 2884.4904 90415447 tktA Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2075.8589 3805.4499 5178.9619 84500768 xyla Carbon Cycling Carbon degradation Hemicellulose Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; 3989.3236 6113.4003 4418.8738 7483.7888 3097.5959 186422.4863 4995.5134 5738.2988 5367.494 3935.4545 3935.4545 4443.856 8131.6575 7848.1327 4800.5708 5441.4286 5926.1968 9828.1226 9956.8019 9106.5588 4061.0714 11504.4749 8941.3846 9521.6297 4330.8178 4863.1362 5214.2018 3280.317 161330491 arylest Organic Remediation Aromatics Other aromatics Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 3160.9176 2375.9826 4864.7123 6291.0352 6170.289 1901.0223 2559.7509 291091209 ppx Phosphorus Polyphosphate degradation NA Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 4400.4906 2469.1543 3383.8493 3148.4073 53770.8893 111679.6889 7202.1977 3110.02 8252.0893 6665.9842 3541.7941 4527.4088 4945.9408 3507.2297 6498.2972 8003.3333 6560.1444 2908.1704 2929.1681 4113.8704 2434.172 5860.9741 374414951 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 2104.8231 4302.0438 56494.2932 7244.9418 3850.3065 4936.7798 4503.5801 2666.4506 3259.0151 3443.4203 2151.8741 2960.9298 3149.2692 4828.8918 85703825 phn Organic Remediation Herbicides related compound NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5671.181 3760.9506 799237 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9034.8849 284047784 amyA Carbon Cycling Carbon degradation Starch Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 2244.2366 3496.1702 2108.5364 3002.5084 3378500 nitrate_reductase Nitrogen N Assimilation NA Phaeosphaeria nodorum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 2257.0723 5012.0848 319909312 glucoamylase Carbon Cycling Carbon degradation Starch mine drainage metagenome 2517.1258 2736.7121 309370627 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 3040.0078 2669.8198 3483.5153 3810.1394 4375.9429 6888.5023 5399.7202 4719.7692 5093.0244 7012.3498 2430.8481 6345.7607 3586.6627 5162.7036 6278.5971 3387.8952 3720.5314 4110.2245 3709.4144 8927.848 126035163 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 11053.7026 2935.7752 4509.5783 6406.3161 3455.1902 9630.2458 2090.4891 1900.1249 2419.4576 374711427 amyA Carbon Cycling Carbon degradation Starch Sporolactobacillus inulinus CASD superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 2380.8178 3676.5141 5306.9828 2449.984 3183.0548 5718.5411 375103557 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 4266.6555 2129.1333 3676.8692 60389.8406 3329.3897 3015.5262 3015.5262 7357.428 2723.4891 2505.6904 13049.4737 4458.6573 3035.5053 3132.0363 5522.1562 47680327 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2023.4216 1963.9913 5073.5355 2484.1876 52747747 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 2498.3978 2980.9486 238503.2017 3560.141 6395.5092 2860.2019 6401.8872 4696.6607 5714.3556 5085.0738 4369.5764 2859.3013 5834.2341 3290.0749 8895.5654 4663.0033 3942.796 4273.7807 2068.1198 259507041 urec Nitrogen Ammonification NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 4334.5991 862886.8831 5195.9557 6514.1819 7068.3152 4272.4947 2682.2001 7048.4468 21550.2857 93353722 TIM Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 4996.032 3255.0934 4931.7897 6392.0073 3532.5881 135597.0559 5042.9698 6092.3409 8840.4804 6958.9733 4331.6629 7745.4693 6379.7724 2772.4812 8943.2035 3405.6219 12603.8148 6612.5986 6585.5009 3720.9452 3660.8073 6192.9975 3592.4232 6158.9478 262201846 cysJ Sulfur Reduction NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 7428.8572 4365.0712 12559.8661 2659.8091 218989090 phenol_oxidase Carbon Cycling Carbon degradation Lignin Paxillus involutus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Paxillaceae;genus:Paxillus; 2057.2116 3616.3026 3637.7826 3983.1056 1863.0299 383704964 tktA Carbon Cycling Carbon fixation Calvin cycle Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 3168.8082 119482173 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 2446.9593 5581.7095 6231.454 13461.7428 2197.1074 2197.1074 7711.2192 3638.6252 4431.816 3873.4952 10129.3324 7258.8354 4171.1366 3261.6767 2631.0792 343920390 urec Nitrogen Ammonification NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 1945.8805 70330.7946 2472.3314 2472.3314 2684.6365 16708.5449 3261.9318 3487.078 2741.0735 3716.1408 5104.6653 2067.4966 56475736 amyA Carbon Cycling Carbon degradation Starch Aromatoleum aromaticum EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 6712.2182 2281.5651 2281.5651 3929.1431 1678.8943 32446447 ppk Phosphorus Polyphosphate synthesis NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 2819.7407 2705.2888 3256.6361 7529.3297 5127.7636 2792.9183 6377.5942 11310.0625 3022.055 4979.4248 2589.1818 398171770 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM49 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4964.4404 3304.0681 3720.0803 4292.1953 2380.9717 186221.5714 378729789 chnb Organic Remediation Other Hydrocarbons NA Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 2742.0909 3223.4348 3074.872 6137.7149 6035.8754 284014387 tehb Metal Homeostasis Tellurium Detoxification Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 2570.2262 3287.684 3287.684 9781.0043 275965.407 3278.9205 3154.5651 345042366 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 2777.5075 2934.3329 7228.178 2424.1837 3983.1053 3426122 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3571.5709 83595923 merb Metal Homeostasis Mercury Detoxification uncultured marine bacterium Ant4E12 superkingdom:Bacteria; 30894.2031 158141593 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 2047.3157 2970.4642 5061.6162 54903.4495 4590.9472 4608.0057 3629.4226 7749.1156 5692.5845 315226375 cellobiase Carbon Cycling Carbon degradation Cellulose Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 5278.7064 57343.8068 3579.9892 10693.8827 4361.4346 4656.7309 4475.2169 86558846 PRK Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 192536.8718 4052.2276 6165.3796 3498.4452 57888.8221 4471.1736 2806.4642 2806.4642 7910.0238 4257.3643 6203.0831 3830.6415 3037.3996 3043.5018 11788.5993 4712.2986 6416.8993 3342.0155 3517.682 5916.9696 239911743 amyA Carbon Cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 4078.8029 13297.6513 4181.3653 2499.1612 13145.5497 2438.1998 3337.519 89068153 mer Metal Homeostasis Mercury Detoxification Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 14183.2797 3326.0767 296263874 aoxb Metal Homeostasis Arsenic Detoxification Roseomonas cervicalis ATCC 49957 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Roseomonas;species:Roseomonas cervicalis; 3296.8875 2897.8718 77309.2169 3688.9623 3887.1907 4149.6621 2469.1935 2469.1935 4529.4636 3672.6487 5143.5555 5309.6197 4073.3907 5184.3883 8672.6251 3470.3214 9245.2919 4003.7149 7511.7412 2363.9288 4017.1135 6249.8705 387965361 phytase Phosphorus Phytic acid hydrolysis NA Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4247.9665 2754.6107 2754.6107 5202.3593 6624.672 376244894 ppx Phosphorus Polyphosphate degradation NA Corynebacterium diphtheriae HC01 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 4889.9806 3513.5752 5718.7029 56672.329 2946.7872 6687.4646 3206.7308 4805.8821 2224.1566 5039.1453 10310.3426 5317.6943 1779.741 3659.0357 4175.3515 2230.1389 353209658 Sir Sulfur sulfite reduction NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 2319.9865 58565.7921 3052.8191 5504.4667 5403.4847 2997.5609 2717.3318 5701.4431 6815.3621 1863.7569 3428.2358 4272.9087 6228.8968 359385425 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudomonas syringae pv. actinidiae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 2127.2078 4874.2648 6661.1917 100308.2118 7155.8028 4486.6861 4619.158 4619.158 9685.1098 3815.4437 83478.1938 3601.3336 256825134 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Kytococcus sedentarius DSM 20547 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Kytococcus;species:Kytococcus sedentarius; 8838.4871 5294.2433 347541377 nosz Nitrogen Denitrification NA Pseudogulbenkiania sp. NH8B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Pseudogulbenkiania; 6399.7278 3311.3488 3816.7203 6923.3624 6923.3624 6850.2631 4028.0994 4806.1164 6856.3959 5408.3709 2549.4384 6676.3113 3317.3024 10113.3912 3732.9501 8136.1221 3770.9906 3232.891 5014.4273 5489.1549 55978141 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3332.591 3189.3311 76245.301 4217.8085 6844.08 3767.4505 4422.4354 4702.5706 5646.2725 5026.3357 3376.8825 9669.4571 148239092 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6976.3923 6040.1961 3406.7366 386274918 cysI Sulfur Other NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 5278.248 209550109 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 20349.2989 1867.9549 1867.9549 220714892 terc Metal Homeostasis Tellurium Detoxification Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 1796.1259 10953.826 4689.6587 14115.1437 4206.5946 3221.9561 3910.0045 5110.8876 340027500 pgk Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 2697.5413 3687.2786 4709.4563 6527.3965 2338.8496 2338.8496 5261.7373 3310.6424 3318.5976 21714.8282 5896.4799 13249.0529 55685.9821 2553.5878 260896756 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus Peru-466 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 2421.9197 328923077 amyA Carbon Cycling Carbon degradation Starch gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2320.9522 4553.9338 4090.5344 5926.6691 10131.6119 5555.989 26114.1148 8448.3941 8391.916 2972.1734 7968.1335 5481.5161 13803.2961 5176.3883 13314.7314 2220.4573 17275.3221 19265.8187 11591.878 19048.6605 3822.6748 7836.7579 6411.2544 11276037 nagg Organic Remediation Aromatics Aromatic carboxylic acid Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 2950.2404 603892 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 3104.0818 3100.9174 3967.8923 55670.288 3428.7306 4245.448 3011.2577 4174.6598 4471.864 6479.4202 6463.3723 2773.4277 2065.3504 118424535 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2775.8166 332372314 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5278.5452 2475.30625 5611.579 3000.896 66568.523 8270.1082 5156.8586 2579.0391 2579.0391 5975.67235 4561.1554 3897.60535 7278.1948 5947.0364 3894.5364 11913.7033 14086.5049 44684.0028 6409.39885 2701.4372 7098.9139 46307908 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2589.8896 6714.728 153092.8905 1875.7699 1875.7699 4027.3421 5486.4759 3826.8724 7171.1885 3881.3188 2382.661 351780661 alginase Carbon Cycling Carbon degradation Alginate Yersinia enterocolitica subsp. palearctica PhRBD_Ye1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 2531.4246 3631.8604 6517.1705 4042.7359 3944.473 8193.5747 4150.9109 5301.1295 2159.4666 3173.5422 3932.6844 254388305 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 3805.3549 3587.7968 79102.4796 5412.19 4212.895 37461.2708 37461.2708 4624.3442 5107.0031 5965.1839 3108.1187 8120.0788 7309.0678 7958.43 2958.7531 11719.8428 285878237 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3665.932 1981.0591 390610320 chnb Organic Remediation Other Hydrocarbons NA Turneriella parva DSM 21527 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Turneriella;species:Turneriella parva; 2423.3534 2584.2892 3787.8075 3784.831 3205.6706 54948.1256 4411.5766 3832.9483 3424.1635 3424.1635 10877.6477 6979.9893 4511.8717 4301.871 3233.4869 5121.6252 7609.6569 3830.3932 5312.3078 1849.1067 3348.2888 3343.5323 2374.5923 348651136 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2946.2671 85068980 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2026.0838 5955.5602 2738.0463 4588.0014 300727996 amyA Carbon Cycling Carbon degradation Starch Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 63166.4172 2959.1923 3507.1525 61922.5087 2381.9642 8859.9136 4584.7818 6215.0326 2177.9904 2715.1757 76666825 APS_AprB Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13855.223 6754.8922 48185.8711 3832.5873 3142.2863 313105045 dsra Sulfur sulfite reduction NA uncultured prokaryote 11924.0345 4622.915 26203.6217 11992.292 71801.483 5950.7484 5001.9542 6041.4507 3480.6247 83025972 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5230.1715 2877.29 4207.5981 92409.4323 5490.3338 5029.496 5929.9048 17779.1679 27864.5665 4054.0695 6316.155 3651.2003 11106.6823 10948.5264 8133.8047 2780.887 4400.598 3353.9454 6726.8131 373101168 poba Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 2882.3172 7231.1107 3228.6043 3696.7085 229008.9028 5392.4319 5564.4097 22703.1445 22703.1445 3684.2104 18717.6985 10038.2542 7717.2967 25517.5045 4511.9222 2725.5903 3662.0778 6649.7428 3759.7236 11009.0347 7740.4642 49257.4886 7410.3122 5682.9061 5106.2816 2761.6096 151302293 aps_apra Sulfur adenylylsulfate reductase NA Desulfobulbus sp. DSM 2033 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 16592.197 374602886 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 1775.0046 325064067 tktA Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 3676.5898 2840.1353 202160.5105 2569.4413 2569.4413 3582.0623 92918950 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin proteobacterium AI21 superkingdom:Bacteria;phylum:Proteobacteria; 7713.2768 3825.2945 2997.8268 4761.8968 139726.6789 9721.4959 4006.7258 6856.8155 4808.6797 4136.9567 3088.3898 7508.4797 3735.9506 13730.2233 7394.2882 5755.9983 4203.731 8046.7492 4570.697 3879.2148 9897.9372 392435051 badh Organic Remediation Aromatics Other aromatics Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 1835.3588 3581.4875 6363.7663 4103.2382 78433.8106 4246.0688 3691.9211 3698.0313 8480.536 6059.6978 4631.2551 4219.3132 2722.3913 6377.3519 2520.9197 8505.178 6194.0281 9472.0199 2346.732 3764.5414 3148.7218 3368.0545 6956.6409 77812438 nirs Nitrogen Denitrification NA bacterium D11 superkingdom:Bacteria; 13913.4536 387789695 amyA Carbon Cycling Carbon degradation Starch Solitalea canadensis DSM 3403 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Solitalea;species:Solitalea canadensis; 2187.0496 3904.2297 4161.4782 4220.2826 3661.1493 3661.1493 295438937 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4683.5284 3026.3273 4280.7584 4354.3973 2621.3254 62172.0914 5102.0106 67021.7532 3976.4358 2046.6737 2046.6737 5079.9193 4507.2309 5171.8967 2560.0464 3361.3263 195537609 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3297.5705 3530.777 3633.3081 4273.0996 14804.3331 5046.4989 4844.2247 10688.8968 6466.4856 3401.8658 8968.484 6796.8261 4795.1997 9101.6467 2923.5202 12298.7037 5089.5399 17298.3693 3452.8711 3075.7733 9978.879 255267499 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 3938.7027 2467.9222 7213.7576 3438.5202 239408.6385 10638.539 4291.2066 18426.741 2143.7923 2143.7923 3530.7277 8315.8424 8085.5949 10581.232 5980.7741 4338.6629 21810.016 3608.1093 6811.6098 4992.0883 14550.3956 5825.7114 8359.0176 2394.8754 4311.3071 5208.5941 3110.3021 291182734 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 2036.1422 5021.3599 6384.1491 3427.8568 5282.5649 3337.2319 28273025 ligninase Carbon Cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 20940.5812 2610.4158 3445.7145 3121.0401 5764.838 21880.7054 8999.446 11463.2031 2134.1544 5260.5239 3098.9464 2720.7085 387844322 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 2668.5424 5941.7092 6581.5919 4982.1431 58001660 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 3656.5856 5087.9743 3687.212 4971.9032 4971.9032 4001.0242 3012.1247 3841.1094 2294.3008 5253.3998 5554.9615 2132.9477 84511168 nifh Nitrogen Nitrogen fixation NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 3987.6615 2477.1701 4379.8808 4165.8295 6814.2532 2688.3298 128627.9376 5005.5514 3815.3528 3301.7846 10567.337 7565.6007 199465.8298 17845.5637 4026.3842 2494.2071 8163.4412 3437.0084 12501.4839 6508.0789 8709.737 3074.2158 4031.0019 4325.1052 3898.6083 7183.17 238493445 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 2501.1476 5908.0047 6115.2244 3905.8737 335863198 sqr Sulfur Sulfide Oxidation NA Shewanella sp. HN-41 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 2493.7379 3057.645 12469.2447 2080.4697 78035311 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. vesicatoria str. 85-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas euvesicatoria; 14499.7154 6930.7276 2689.3329 21556.2015 114768787 arsc Metal Homeostasis Arsenic Detoxification alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 27242.5571 77379184 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 2593.3803 4229.0664 167749718 endoglucanase Carbon Cycling Carbon degradation Cellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 2982.7555 3418.3869 61664.2228 404400467 sdsa Organic Remediation Others NA Pseudomonas fuscovaginae UPB0736 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 7514.8598 3962.8735 4430.6817 6766.1305 7578.1879 5403.9313 5181.7854 6015.9093 24984.9656 5060.4578 6720.7016 3211.9038 2962.6222 4086.0021 5329.7292 4888.4914 28379475 badh Organic Remediation Aromatics Other aromatics Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 5003.9686 4510.0909 8301.2318 1824.9075 87311398 nitro Organic Remediation Others NA Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 2074.0367 2660.3914 2435.6162 4147.5999 55974.3733 2828.4491 6755.256 4337.3184 5230.9588 4800.5725 3059.574 2760.0246 6578.4942 9514.5005 5255.5646 2475.8715 2901.4813 4274.6767 5763.2599 59893226 nosz Nitrogen Denitrification NA uncultured forest soil bacterium superkingdom:Bacteria; 9202.6593 51224.0352 5535.6472 5632.2409 4661.5191 4661.5191 7853.0538 5239.1143 5145.5126 2845.0724 93038.943 5125.3327 30249739 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 3854.0487 2639.3186 5097.7985 6595.695 4286.6703 1876.8481 3062.9338 3676.0865 3456.7305 375052423 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. PDO-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4481.334 3106.0554 2487.3648 2340.3474 2340.3474 7486.276 37071.4167 11962.4197 40179.6835 381395420 cysJ Sulfur Reduction NA Glaciecola punicea DSM 14233 = ACAM 611 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola punicea; 2727.8984 83637134 amyA Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 2311.1559 2798.4048 5106.3338 39575237 ppx Phosphorus Polyphosphate degradation NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 2475.9707 2248.6453 2474.4928 4165.553 2979.5045 100433.8202 4001.9866 7851.8714 2193.9585 2193.9585 7925.8035 3156.7564 3105.7658 7184.5938 3417.0655 2776.5202 3908.8001 332377230 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 55050.6878 3451.327 9101.1938 3996.3384 2914.7628 3997.825 2988.513 409188159 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2524.4191 2716.109 86217.9366 4104.1497 5405.7071 3724.664 5677.8899 2705.0752 6080.0844 8144.8157 5604.8647 3302.2984 3171.9901 118706446 vana Carbon Cycling Carbon degradation Vanillin/Lignin Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 25496.3797 17154.5068 3522.6474 10079.2448 2535.7421 4325.6097 51244650 dsrB Sulfur sulfite reduction NA Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 6267.8995 183984745 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 2360.7336 25897.7605 5137.7523 5626.5798 36309.5449 5475.4201 2101.1731 4922.008 2505.7191 6669.3503 7238.2512 342820444 ppx Phosphorus Polyphosphate degradation NA Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2139.04 9649.8819 96991.2941 47484.9112 15951.2547 5090.0771 238578511 mannanase Carbon Cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 2933.7776 3314.2458 2906.1225 2157.9644 255947706 pec_Cdeg Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 2427.8998 2605.9175 3875.6105 67023.146 6857.072 4635.4224 3287.0306 8174.3426 4642.1173 5675.7492 6308.7013 5894.7652 2697.8 7001.1006 9747.477 4429.2794 6755.641 2285.6827 4305.0264 3544.1587 2368.9867 7585.2007 337746258 rgh Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 2154.9205 4046.7364 1579.6141 2546.9762 118730373 arsc Metal Homeostasis Arsenic Detoxification Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 2425.6629 3033.7395 5664.8231 2323.1814 2323.1814 31070.911 5231.1168 21105296 tutfdg Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 13479.354 4465.2521 2805.9613 151755.1858 8372.6166 2421.9626 241956510 phospholipase_B_fungi virulence degradation NA Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 15045.3213 237858233 GAPDH_Parabasalia Other Phylogenetic NA Joenina pulchella superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Joenina; 2781.4316 11030.3582 4385.482 2692.5419 1863.5232 3206.4735 5512.0505 254941668 invertase_fungi Carbon Cycling Carbon degradation sucrose Gnomonia gnomon superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Diaporthales;family:Gnomoniaceae;genus:Gnomonia; 4732.9561 34108.3227 3154.7355 3154.7355 19309.2506 198248165 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 10953.5972 4510.4361 372459879 amyA Carbon Cycling Carbon degradation Starch Brevibacillus laterosporus GI-9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus laterosporus; 30668.0145 146409880 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3600.6305 2096.8251 3055.8436 3055.8436 2342.5977 4249.7407 7266.8493 85670420 phn Organic Remediation Herbicides related compound NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 1956.8559 1870.8886 1870.8886 6033.083 4914.407 13056.7127 374349028 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4341.9011 4322.9792 5945.4194 5945.4194 41792.9809 6678.1768 5884.8657 3439.8199 220906394 pgk Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 19498.4035 57504.0803 253781309 urec Nitrogen Ammonification NA Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 1999.2529 6057.4953 167763311 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides stercoris ATCC 43183 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides stercoris; 2137.4734 3850.6016 3519.9952 65053.161 8950.1075 3828.0886 4304.3325 5906.921 10092.1078 6040.2401 5118.2146 2554.8539 3077.6107 2313.647 7371.6883 389872510 chnd Organic Remediation Other Hydrocarbons NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 7143.3756 27438.475 6474.7919 14717.7998 5395.8927 3487.2215 260577547 amyA Carbon Cycling Carbon degradation Starch Corynebacterium jeikeium ATCC 43734 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 2058.2315 4139.5714 3219.8816 6659.1327 6161.8185 5430.833 10093.6607 10093.6607 4310.5704 4515.8021 4414.5344 12778.1023 5657.0798 4903.1798 4310.381 6906.6749 4632.6246 299776380 rgl Carbon Cycling Carbon degradation Pectin Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 3611.6657 297204166 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 5255.8037 18561.5846 9531.6013 90095.4369 2417.083 2417.083 4180.9646 2454.565 3971.928 1700.6252 116499171 cutinase Carbon Cycling Carbon degradation Cutin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3314.0493 4226.6274 3983.5671 5580.5729 5580.5729 7034.3835 2698.1228 6681.5922 5733.3775 2073.4885 2645.424 332285102 TIM Carbon Cycling Carbon fixation Calvin cycle Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 2380.3325 365972023 vana Carbon Cycling Carbon degradation Vanillin/Lignin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 62953.1823 302867449 endoglucanase Carbon Cycling Carbon degradation Cellulose Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 29737.2045 2682.6164 6439.4453 3373.8493 136557.4446 18109.8388 5367.6441 3956.2368 3170.6931 3170.6931 11091.3383 4238.5805 7116.5992 5007.0685 3506.9759 2792.8123 39736.5936 5397.0225 4936.0702 7005.0637 3422.8722 2620.0711 300586195 TIM Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 2563.178 3165.2636 2494.9987 3400.1576 3554.9755 3554.9755 2698.7827 6941.2724 3591.3831 4139.6043 2599.9591 3037.186 2247.3073 12507.5622 6180.0896 1954.3708 2525.2546 2821.0524 5293.2359 73540988 atzb Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 1959.4448 10255.7236 4228.9913 190768.2845 5375.5131 2587.6428 2315.1685 8358.0161 2231.6392 25900728 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 11271.1905 7504.6962 2934.2917 5728.8 3422.6217 8915.6593 2515.8666 6519.207 2997.642 12250.7929 5199.3434 2313.0256 3212.9969 4986.7774 139003331 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 21563.2952 3075.9785 4974.85 6493.6315 6493.6315 390172347 vgb Virulence Antibiotic resistance Degradation Nitrolancetus hollandicus Lb superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Nitrolancetus;species:Nitrolancetus hollandicus; 2177.9958 10399.0225 4625.5086 172202.9115 2369.1601 6327.0336 2050.4583 2939.2932 383367420 catechol_b Organic Remediation Aromatics Other aromatics Geobacillus thermoglucosidans TNO-09.020 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoglucosidasius; 3459.7366 2453.5818 2077.7562 3256.791 3979.6705 128584.8431 5149.7413 7212.6364 6326.6839 4521.5845 5015.991 3078.124 3545.6993 3779.9968 2609.0741 367474665 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3200.521 3707.2041 7085.2716 5998.6017 5995.4498 3193.5263 380317953 terc Metal Homeostasis Tellurium Detoxification Listeriaceae bacterium TTU M1-001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae; 3481.6945 4121.3955 4074.3219 109676.2756 6735.3422 5413.6562 3335.1092 3335.1092 2869.4414 7993.4026 9662.6152 3945.7505 4745.3006 4236.1728 3723.2519 7108.1837 3888.196 11438.9615 6596.8163 2566.3245 5801.2633 6972.0112 6803.8607 254428957 phytase Phosphorus Phytic acid hydrolysis NA Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 2637.8718 6040.3504 6711.8692 5861.2553 11742.2765 4752.445 6329.9576 2134.7461 4844.9089 73130.9448 108464563 ppx Phosphorus Polyphosphate degradation NA Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 2451.6625 2250.9302 4160.0208 5802.1187 8007.1471 2760.2321 2056.6972 3952.8662 8632.9007 5305.0844 78355738 terc Metal Homeostasis Tellurium Detoxification Desulfovibrio desulfuricans G20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio alaskensis; 4248.2256 3904.9251 4187.7223 3328.7619 4246.5504 421499.2463 7450.6301 5627.7096 2954.022 5203.9666 4092.3835 5868.3186 7549.5827 6903.698 3398.818 8964.4087 3272.4983 13221.6063 7549.0943 9920.4254 3737.2249 4873.94 7752.6475 13661.0457 112462547 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4352.2032 2133.8368 2997.9399 28285.8536 5344.0143 3639.247 4110.708 5455.2711 6125.6769 3740.9342 7351.5221 6573.0122 1599.1698 3548.39 8761.9454 1785560 dsrB Sulfur sulfite reduction NA Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5846.4256 56475860 dehh109 Organic Remediation Chlorinated solvents NA Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 4709.9587 2578.9382 2697.2291 14450.7256 6124.8961 3650.9904 176271.3858 3834.1963 5640.0925 3381.7157 3381.7157 8041.0321 7438.8615 5809.252 6362.1883 2727.5887 4008.4836 8243.1196 4910.9291 26050.7136 9449.7666 9014.1086 6113.8186 30329.6309 5461.3933 4248.3868 7906.748 148870584 cpne Organic Remediation Other Hydrocarbons NA Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 2710.2656 1995.3785 2404.4928 2404.4928 2999.1046 23094408 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 1743.1391 2297.1034 10115.4636 3982.9677 2227.7995 3260.1594 3142.6571 22295000 FBPase Carbon Cycling Carbon fixation Calvin cycle Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 2910.5923 2093.1638 2876.3064 5887.4188 6478.9912 5713.8342 1606.7802 3015.3433 13567.5924 4380.022 260063846 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20578.6312 47507.2438 10176.97 6514.4679 2595.1016 11040.2495 4364.2332 4545.2769 84452295 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 3031.0639 5227.1271 5696.1768 4544.345 76370.6088 4355.3893 12063.8858 8413.8066 8413.8066 178504.038 7254.6594 4361.0012 6389.3376 2307.4647 5676.8674 11993.8876 5729.3133 2813.736 3438.3899 3227.1159 2258.2559 56680548 arsc Metal Homeostasis Arsenic Detoxification Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 9422.4899 3685.6798 4331.951 7041.4622 4062.1588 4545.2858 8173.8084 2672.7075 4979.6426 3489.8969 67524167 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 18382.0397 8478.5416 7017.3687 4671.5809 2961.5816 80562.8893 50599.9957 26483.0943 40812.8296 13870.5446 13870.5446 54561.9893 8887.1662 2756.9381 7643.2422 2864.2922 16160.0536 7198.4544 11837.5125 3165.0188 7597.633 5414.4077 2797.0246 6741.7658 112463845 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2413.3644 2714.9768 34580.5354 3712.1623 4592.2775 2675.5552 6712.2742 6184.4137 3276.7302 10177.2113 2035.7167 49389.4885 3485.9491 5603.8969 2800.2842 242350023 cysI Sulfur Other NA Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 3186.9882 2398.0712 4045.5704 7604.3673 4284.6232 4692.8438 6546.0418 2442.1122 7549.3217 4794.5856 6726.3964 3076.0985 3076.9578 3047.6232 7895.5295 225202166 cueo Metal Homeostasis Copper Detoxification Proteus penneri ATCC 35198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus penneri; 4593.1444 2215.3674 4514.4894 3551.4225 2266.7694 8358.4983 2180.8322 2000.3338 29652462 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3388.3878 6647.7235 229494904 arsc Metal Homeostasis Arsenic Detoxification Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 2527.7544 8553.5171 14005.5534 130436.0168 14726.5227 6191.3499 7030.0635 7030.0635 6941.5281 2938.1002 8984.6269 2085.1302 3209.0617 3399.9173 110819169 badh Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 1948.4721 3101.3746 11102.0901 383840649 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 3630.7007 291074967 ppx Phosphorus Polyphosphate degradation NA Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 2154.1309 3378.4722 72518.291 2006.5178 2006.5178 6348.4477 8008.1161 2695.1458 6463.1091 5798.4148 3163.3783 4731.681 307260209 cysI Sulfur Other NA Actinobacillus pleuropneumoniae serovar 11 str. 56153 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 11910.6246 151810.9399 6204.3702 4830.5232 7107.6321 3374.6073 13716.0744 2172.9869 2776.9233 16782.7262 197359230 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3516.884 3313.8288 5140.7942 4425.9991 87227.4091 4667.5398 4281.0073 5634.1234 5634.1234 4538.3614 13408.7977 6230.7855 5581.4857 11506.3406 7602.2408 3241.909 4566.4064 6729.7647 2809.3295 16863.8996 101059.2258 3452.7723 5736.8329 4699.2626 4669.4068 8905.5742 23008045 Sir Sulfur sulfite reduction NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 2391.028 7074.1139 4878.0253 4878.0253 5206.5731 2346.2919 1824.1949 6897.5493 116075362 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. RS9916 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 37994.3553 49189.4173 2188.1179 4531.545 100018.4843 4743.8173 7719.6579 4255.1876 4255.1876 3036.1435 5933.9947 5875.1976 10904.8179 3463.1686 6263.4683 59264.9329 8404.2891 6685.2886 6596.7029 2765.0287 5531.3411 3485.05 3818.3223 114739845 TIM Carbon Cycling Carbon fixation Calvin cycle Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 4078.5268 3890.5106 4377.7584 3906.196 3604.6844 8406.8894 4446.5689 4693.0042 5603.4163 2672.391 6190.2641 2291.8174 8426.5592 8567.1326 7202.3961 5231.5381 4058.82 3474.2396 3629.0654 7154.0437 99083067 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2599.5647 194334823 dehh109 Organic Remediation Chlorinated solvents NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 2224.0721 3023.3517 3388.675 7388.7637 328866.0462 8763.7273 8763.7273 5244.4645 4203.6461 4330.342 2699.9834 7198.8853 4013.6095 6317.1397 19063.7856 3416.6449 260220977 ppk Phosphorus Polyphosphate synthesis NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 2938.8471 3583.6085 3120.9245 5193.4596 5805.3018 8537.477 4246.8435 5299.318 1794.8155 2675.3163 87408.0317 18181972 dsrB Sulfur sulfite reduction NA Thermodesulfobium narugense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium; 1764.9544 26966.8713 4313.2138 347855.2934 7883.1424 4437.0369 6996.9446 5173.7069 2966.2469 3542.3239 315647837 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4724.6036 2995.1812 4246.7983 2739.0958 68068.0821 6505.8388 3617.6505 4530.0556 5813.0857 2304.0756 7995.5706 8383.3131 5881.0171 4579.2649 1778.6103 2405.1702 4462.1177 3113.3263 5737.8046 90954611 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2423.7974 2342.9266 39005.6407 3840.4898 3635.3485 112964.3795 6239.7705 5056.0058 8866.7775 5477.0642 4498.1719 59295.4108 5004.5397 2767.3997 7039.5679 6815.0072 9374.734 4111.7363 7680.1688 2544.3273 2759.9961 5071.093 2784.9895 119434074 tfth Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. JS443 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2676.4051 5225.3816 13605.7757 4098.8713 201280.9185 3400.3519 3400.3519 11227.6011 5007.5492 12834.2702 7450.6092 12902.4426 4953.523 4881.9117 20602.981 333743605 bphc Organic Remediation Aromatics Polycyclic aromatics Delftia sp. Cs1-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 2192.5861 12173.7509 8343.6568 4268.4498 3183.7727 66817.3784 3787.697 3534.5742 6721.5017 3993.402 3983.701 5206.7474 3881.7784 3136.0672 5985.068 2877.357 4175.3648 7431.9663 2480.4297 3722.1165 2782.0032 4786.2089 271499392 tehb Metal Homeostasis Tellurium Detoxification Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 2399.3995 6730.6939 3769.8756 4934.877 4738.2162 2017.4333 116194570 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 2867.3345 10653.8209 6048.8536 6048.8536 4460.9357 2093.717 4087.6997 148244874 soxY Sulfur Sulfur Oxidation NA Candidatus Vesicomyosocius okutanii HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Calyptogena okutanii thioautotrophic gill symbiont; 2515.7517 214031090 poba Organic Remediation Aromatics Aromatic carboxylic acid Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 2612.239 3747.0933 11503.5282 4904.7759 3497.7089 3122.029 338166070 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 2525.0187 374846641 narg Nitrogen Denitrification NA Nocardia cyriacigeorgica GUH-2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia cyriacigeorgica; 2792.0002 69016.3573 2320.6727 2320.6727 6328.5605 3431.2282 10607.634 2506.5626 2220.0063 19575.3355 1987.9754 16571.8986 1756.8514 6686.7496 15107.9614 2531.7753 99083447 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2318.7228 11393.2976 221311622 urec Nitrogen Ammonification NA Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 2469.2166 3421.7815 20467215 mmox Carbon Cycling Methane Methane oxidation uncultured type I methanotroph superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 2816.4378 5718.1907 4345.9051 7715.7893 14401.1891 8969.8056 3542.637 1953.1556 3290.3403 6774.8222 94499748 ppx Phosphorus Polyphosphate degradation NA Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 5700.0061 2592.3301 3446.1729 3799.7795 103387.3775 4464.351 3580.7126 2631.1711 6230.096 4360.8621 6073.7171 4595.9104 5370.1715 3063.2438 8327.7876 3228.1387 3257.5422 3299.7215 4184.4893 5748.37 89054440 amyA Carbon Cycling Carbon degradation Starch Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 4970.2299 2803.3081 3962.3961 3738.1165 8685.2975 6605.1707 5264.4912 50771.2058 2109.589 2798.3241 5375.1548 2994.0882 10993.7894 6299.4028 2242.5218 3369.9975 9471.4723 3187.0946 316981098 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 2364.7435 3967.0657 255282079 chnc Organic Remediation Other Hydrocarbons NA Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 323078.4344 5791.4816 3067.7166 7338.3559 4346.0815 3247.6699 5290.7685 238606224 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 8245.6231 4730.2304 57565.5086 3820.3374 3245.7883 60876.9196 5141.8587 5057.6782 11482.7881 5787.9277 2548.073 2858.945 6410.1144 2873.6083 10007.7749 4740.1325 2863.4549 4292.2123 3232.8559 3324.499 269211559 terc Metal Homeostasis Tellurium Detoxification Actinomyces sp. oral taxon 848 str. F0332 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 848; 3590.1545 2416.0875 12728.6199 189025380 amyA Carbon Cycling Carbon degradation Starch Treponema pallidum subsp. pallidum SS14 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema pallidum; 2403.665 12972.5722 339504654 nosz Nitrogen Denitrification NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 4103.0646 370152.1946 5082.929 2168.1026 47526.6459 6643.1603 109452503 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3398.8524 4965.0884 3688.9289 57156.6631 9148.724 12571.9542 8449.0744 187714532 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 5742.2798 8359.5325 2926.6418 2828.7859 4884.5331 6355.9792 2362.6365 2362.6365 2952.4879 8118.1227 5644.824 5225.0488 3028.3391 8894.3712 7961.2423 5696.6556 27532.0659 13782.1792 21713.5488 3444.8431 7429.0087 4956.1609 4723.2926 353193787 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3311.9374 4197.2798 4719.1396 2915.7406 2432.994 9924.7511 5604.5498 47600976 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2292.7716 5438.6923 11006.3455 2605.8674 72445.678 4483.1006 2245.5259 2245.5259 5208.3445 4580.2642 3263.0059 3365.7202 7218.5003 3551.4695 3559.8285 6355.2257 2787.1194 3919.8523 2616.0064 3075.7588 4582.7465 57017041 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 2950.6441 3401.6232 4491.1442 4626.3799 17385538 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2351.2644 257048812 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 2076.1361 4993.5689 3719.7984 9211.4447 377560026 amie Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 6560.0962 2485.2684 307546519 poba Organic Remediation Aromatics Aromatic carboxylic acid Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 2232.7837 10673.1711 10673.1711 7518.5302 7192.9642 333369253 tktA Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 4251.4289 312880746 ppx Phosphorus Polyphosphate degradation NA Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 4233.528 6482.6796 2466.2969 89086773 rgh Carbon Cycling Carbon degradation Pectin Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 1975.0641 9965.2346 2458.7614 2734.4573 3427.3714 307772276 tktA Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 5816.0376 3965.4239 10007.9141 7793.6194 2448.364 5838.0677 2144.6373 157804789 APS_AprB Sulfur adenylylsulfate reductase NA endosymbiont of Inanidrilus exumae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5600.6047 664780.8141 1925.123 1925.123 4738.3328 2021.173 330933246 Sir Sulfur sulfite reduction NA Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 7009.9427 5198.1792 5697.6131 42843.7363 3882.8522 115251.6254 6307.62 9359.3387 4814.7735 5987.2076 6217.417 4967.1942 7727.1578 7477.984 2586 3878.4124 219871368 tehb Metal Homeostasis Tellurium Detoxification Haemophilus parasuis SH0165 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parasuis; 1916.3481 10193.623 4455.2043 1918.7908 39954631 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 1961.1791 4386.8734 8627.081 294992307 endochitinase Carbon Cycling Carbon degradation Chitin Trichoderma longibrachiatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 4140.3405 2330.2858 4516.8196 2935.6705 70139.3667 5135.0922 3684.7279 8424.8503 5198.9765 4733.6815 3747.3727 4784.1036 6588.942 2096.2927 8512.5167 5162.6241 2843.3507 4081.476 3768.642 4508.6872 296931332 amyA Carbon Cycling Carbon degradation Starch Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 1756.1813 55168.6866 6413.4333 2671.5138 1950.5762 2997.3369 4455074 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas abietaniphila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2677.5793 3513.9326 2684.8508 9567.7306 4734.5308 4016.872 3636.1865 8204.6388 7104.0216 5619.317 4447.9213 6181.1651 2638.6443 3826.4298 3755.4118 255321510 ppk Phosphorus Polyphosphate synthesis NA Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 3619.0508 460560.6153 9957145 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus ciliatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 4798.3059 1996.7637 260776800 dehh109 Organic Remediation Chlorinated solvents NA Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7957.2127 3258.9028 6052.9009 4321.3411 4491.344 3674.0965 8264.5498 2138.8213 6738.6375 30180740 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 1954.4585 3167.8381 5365.9962 3700.9142 2215.8199 7049.193 6931.6444 2061.4675 4163.1671 11229.2164 7005.6344 332334951 xylanase Carbon Cycling Carbon degradation Hemicellulose Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 4763.1138 3491.3954 4487.594 2330.1233 2330.1233 2719.3737 8788.088 4555.5028 3776.2036 3514.1692 6283.0675 8829.5278 12241.584 3710.2631 2803.0962 4881.1494 4839.5233 3754.7944 209869110 dsra Sulfur sulfite reduction NA uncultured marine bacterium superkingdom:Bacteria; 3802.1801 2405.5768 2547.491 70206.9371 4212.4178 9654.9833 1945.0264 2748.8035 2472.3757 345870932 FBPase Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 3172.292 7600.7797 3779.3362 3606.6109 3538.9818 127660.7304 4700.1913 4700.1913 5096.3556 3459.5266 5849.3214 9153.7443 2239.0437 5132.9539 7743.953 9934.654 8382.4417 6375.5739 3738.8351 19216.0413 4902.2176 2362.3517 50982442 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2237.4745 5782.2563 2114.6569 4697.7009 4770.6331 5663.6608 2347.9121 2347.9121 7839.7377 5525.2391 2606.307 4817.7235 9287.0354 4960.6169 4547.4342 8938.6366 4011.9251 18124.6633 94551812 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 5481.1485 2722.0366 7988.6645 2062.9854 2062.9854 4187.1681 6792.4695 6294.8067 6538.6516 4791.4543 15603.7139 5373.6013 18162.3226 8900.8815 3682.7259 3596.76 5778.3305 88816551 Sir Sulfur sulfite reduction NA Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 2089.1178 2384.7221 3508.2954 4522.6752 1810.8148 1810.8148 3824.9997 2398.5238 6296.4195 4928.1208 2442.5084 3986.1452 239579679 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3483.8347 2874.5656 3420.1139 6819.6842 4954.0804 4853.9176 7821.6833 5219.0021 3019.4984 380476930 badh Organic Remediation Aromatics Other aromatics Colletotrichum higginsianum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 1738.1949 4107.0355 3236.8034 14187.939 2467.3182 6436.3813 93360.4487 2860.9939 151937072 cysI Sulfur Other NA Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2968.7444 3807.6151 6392.8329 7400.0926 196052737 one_ring_23diox Organic Remediation Aromatics Other aromatics Acinetobacter sp. B113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3723.56 4555.164 2557.0492 73713.9656 5001.9799 3599.4884 7098.87 3294.7081 5562.9078 2535.1081 5595.9265 9578.5359 3036.4787 2423.3975 2349.8106 304422957 aln Organic Remediation Others NA uncultured bacterium superkingdom:Bacteria; 2289.3825 14120.6441 26647.162 9397.8169 63016.7691 3690.0353 17995.7051 2755.3881 2755.3881 5734.297 5877.2041 2000.4262 16415.3552 3041.7634 363650035 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Campylobacter sp. 10_1_50 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 7365.1897 9071.7882 2007.8645 71635.6499 4001.3578 6184.9194 5906.1817 2536.0411 9687.7598 3087.6287 4125.7294 5797.1914 148474750 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2455.3162 294485485 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens F0305 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 6764.3892 3996.7658 3220.617 3449.2 6913.7118 4934.5451 9156.1895 9156.1895 4269.5232 6813.1672 8174.1443 7629.9823 4230.7144 2720.0524 6706.7298 9761.4255 6114.2019 1777.2097 18296.4617 4297.3217 10536.8443 296113250 pgk Carbon Cycling Carbon fixation Calvin cycle Moraxella catarrhalis RH4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella;species:Moraxella catarrhalis; 3575.9573 3123.4789 36871.6046 3917.9747 5832.6145 11832.457 4552.1547 1814.348 7707.6237 6807.4166 3673.6275 7306.1627 237858267 GAPDH_Parabasalia Other Phylogenetic NA Metacoronympha senta superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Metacoronympha; 3858.428 16031.3124 2096.1829 24538.8051 5957.106 79399.5494 7650.354 6937.8306 6027.1974 6040.156 6552.5349 2789.0412 12854.4471 4677.3502 8708.8055 3296.1005 3039.3937 3327.5275 2911.34 9647.6616 77378649 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5734.7192 6778.1853 3463.7749 4065.8265 1857.7857 3884.5614 42405887 actin_Rhizaria Other Phylogenetic NA Urosporidium crescens superkingdom:Eukaryota;phylum:Haplosporidia;genus:Urosporidium; 3265.2908 4382.902 2045.7376 323496740 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 1948.0376 2532.5507 3829.5281 71179.4064 4234.036 4373.7298 4564.4427 2798.9757 11290.4846 7447.2125 7077.4874 11481.7414 4660.9596 1957.9866 2640.4379 7829.8452 12798.668 5032.0861 8200.0115 2364.345 4721.3305 6085.724 2390.1284 4750.6171 50286721 phospholipase_B_fungi virulence degradation NA Candida glabrata CBS 138 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Nakaseomyces;species:Candida glabrata; 2820.4403 16614.9143 5637.5104 3449.2616 5296.5908 7771.6719 4665.0823 3033.9885 4226.5669 40319.0433 2067.5161 3727.6433 6576.6643 2673.4222 7609.0162 159892631 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 3580.0884 22209.1844 3208.2771 70956.8798 4830.4883 3283.0147 4927.157 2178.6137 19714.1825 7583.824 3654.1386 2418.2175 4702.7173 8578.9617 4472.036 148474782 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2407.0062 2529.1249 97817.082 2877.0515 4407.7638 12209.9053 2571.1516 26818.4712 7904.9013 387846446 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 2210.5249 2040.9047 5358.54 4150.04 5150.8079 2489.1704 2489.1704 5125.4294 8218.2972 2680.9417 2402.5289 9439.6818 6727.0004 3760.3151 4154.6107 3479.505 304386900 norb Nitrogen Denitrification NA Neisseria meningitidis ATCC 13091 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria meningitidis; 2773.7564 22540.7534 19429.667 1729.5232 92114814 cysJ Sulfur Reduction NA Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 5205.8586 72526.5683 110165288 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 1966.0443 141406.0502 4285.9293 4866.4479 223585864 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5209.4232 11579.9995 4808.8192 4453.9815 143484.371 4498.5352 6315.1355 6416.2197 3547.0669 2418.9148 30911091 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 25447.2623 4425.8884 67462183 B_lactamase_A Virulence Antibiotic resistance Degradation Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 6497.4794 2150.599 11843.7281 7058.096 5815.3955 2923.2924 333604533 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 13206.0762 91890.2173 8200.8419 5533.2966 180579.5228 20991.6443 2713.3719 8012.7859 340247139 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 1986.267 110592193 nirs Nitrogen Denitrification NA uncultured organism 6446.0527 8776.8892 16427.0121 25321.9574 218892208 cysI Sulfur Other NA Pseudomonas aeruginosa LESB58 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 4436.7131 4249.6791 14055.6293 2469.227 2469.227 3955.2433 5139.1427 3514.3565 19591.5139 3668.4839 4297.8581 145589121 arylest Organic Remediation Aromatics Other aromatics Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 2728.861 2330.6072 3898.4445 7086.2991 4688.4607 10212.1495 7956.5881 3453.9424 3039.3642 153876078 ppk Phosphorus Polyphosphate synthesis NA Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4176.1844 3724.9988 4902.3248 27623.0025 4872.8001 4570.1683 5105.3257 5105.3257 3393.9082 6754.8883 15039.0755 6468.7299 3016.7535 2068.5607 3055.0383 3369.0399 6136.4881 300486149 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium superkingdom:Bacteria; 2679.9495 2190.9393 6114.4903 2502.2225 3353.2033 3188.0371 2074.4461 2074.4461 11483.9253 4501.6532 4015.1173 7416.8914 2416.6141 4320.5687 620295.9817 145221604 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 2893.9808 5371.471 3205.6693 6705.226 5466.3108 9067.1671 5659.5485 3379.5353 237797581 atzb Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 3298.2922 4533.7955 3084.2823 9551.694 6140.0954 2692.7735 11882.6982 5253.9948 5474.4346 62432947 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 3625.7296 3416.57 5318.8991 4182.042 14509.8207 311226202 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 33657.8045 3589.6164 6508.459 5621.6474 2856.4037 11076.6898 3837.55 2552.7525 7578.4752 6499.1312 8190.3691 2009.0208 3267.1705 116634751 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3602.6625 3948.8622 2825.9052 60505.8041 4899.9182 4307.7388 4067.3046 5703.2563 5153.1083 13269.6454 2459.6107 7213.5343 8308.451 5086.0363 2953.9741 3072.7732 4932.9297 5199.4612 83643155 pula Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 40112.7875 2368.273 59192.779 5670.8999 3507.4742 4270.4642 7493.5545 2064.8817 2184.7681 8842.829 114569801 ppx Phosphorus Polyphosphate degradation NA Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 3236.7692 1937.2605 6746.697 2206.5516 67333.5328 3685.9472 2521.4759 2521.4759 15166.9928 116047905 mer Metal Homeostasis Mercury Detoxification Brevibacillus sp. HT1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus; 2203.1967 3603.121 4517.2713 4517.2713 4907.7922 4142.0568 42375.5835 2243.9222 4265.7035 1957.1974 315447310 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 2503.6224 2513.6909 62705.9356 1754.0457 1754.0457 2619.4235 4197.9454 6975.1848 2020.9163 2767.643 110678778 mer Metal Homeostasis Mercury Detoxification Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 3184.1457 6276.3841 6360.6919 7601.7746 8284.0761 3431.3467 95179.6042 3925.7917 5201.0205 2278.7302 2278.7302 17043.1872 9640.363 6239.8198 29305.4458 5638.0507 6215.2492 8062.8876 7813.4782 16494.5754 8725.2975 8757.4266 4241.553 6661.072 20081.6581 3000.3503 6833.6195 359833393 ppx Phosphorus Polyphosphate degradation NA Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 2109.9662 39732.6581 4647.8104 61349.4497 4180.8684 7872.2965 2025.5865 2723.4718 6977.8074 13424404 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 3850.7444 2008.0216 332592273 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4344.0243 2511.8332 8528.3359 8528.3359 11440.6117 6108.2194 4672.118 11930.7764 3085.5738 3909.2307 4793.6689 6444.048 2601.1806 3697.8832 4258.4203 3183.6552 6340.6614 118618393 amyA Carbon Cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 2355.5067 3918.0153 1717.78 46115084 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 2162.9689 4046.6494 63852.4103 11988.2556 140768.3008 4386.472 2817.1293 5592.7218 476453.8241 2261.1374 298373172 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroidetes oral taxon 274 str. F0058 superkingdom:Bacteria;phylum:Bacteroidetes;species:Bacteroidetes oral taxon 274; 2214.5258 90018.0671 4086.4887 2797.7822 345023536 B_lactamase_A Virulence Antibiotic resistance Degradation Ornithinibacillus scapharcae TW25 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Ornithinibacillus;species:Ornithinibacillus scapharcae; 7670.6503 4035.2438 115402327 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3730.4741 326384834 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 3598.2157 260774244 amyA Carbon Cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 12215.5682 22012.6156 3708.4729 3672.1632 3279.958 57601.5494 4364.8821 4582.3637 7510.6832 7510.6832 3633.6034 9457.0609 16602.4713 6736.5293 53780.1253 10816.1429 2918.3021 7002.6204 2207.9484 13417.4519 9626.5029 11756.451 2413.8441 4544.1386 4764.2219 3147.1782 5521.652 158443876 arsc Metal Homeostasis Arsenic Detoxification Faecalibacterium prausnitzii M21/2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 2226.4957 94471197 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2345.2936 3381.1809 7719.5658 5369.5475 4020.4785 4259.4789 4259.4789 3397.6898 2611.0245 159106208 Sir Sulfur sulfite reduction NA Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 2404.4738 2683.8997 119513688 urec Nitrogen Ammonification NA Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 75831.2646 2195.0103 2195.0103 4627.5404 251845694 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 2146.7518 4336.6891 5847.9444 294981247 ara Carbon Cycling Carbon degradation Hemicellulose Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 3633.1456 2808.9173 3870.5202 3727.5219 55167.7431 4231.9099 5987.1477 8853.4306 5617.2412 4638.8541 5597.9089 4480.6785 4187.8962 3408.383 6515.2417 2126.924 4821.6727 6578.7574 2798.646 3824.8371 3793.3312 346643288 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 4817.1665 2850.7567 3039.4001 16549.1908 5435.7944 143702.1534 4847.7181 4648.9101 7475.6221 7475.6221 9503.9494 9999.3742 5490.1512 15014.3007 5721.3221 23513.9829 3043.8565 3379.5008 7810.266 3847.6744 10450.476 5956.2938 8589.7176 2691.0024 4244.3685 5450.9075 3944.1023 6255.9582 166334 phenol_oxidase Carbon Cycling Carbon degradation Lignin Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 12116.4178 4413.3001 8652.4229 7329.4474 4458.5598 6099.2577 9406.7848 7154.9283 2559.7737 112463935 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4724.8046 2482.0631 5211.2656 3500.0074 7990.3152 5463.2483 2116.7691 3022.8582 2653.7434 2138.8066 307548780 mhqa Organic Remediation Aromatics Nitoaromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5103.0903 5955.5431 6220.4293 6284.9714 3532.9248 20324.0922 383826160 linb Organic Remediation Pesticides related compound NA Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 2028.512 7374.0617 3505.0206 91156.4976 15250.0886 2853.1164 2853.1164 3049.1966 6519.1007 2371.3117 8895.713 2842.1884 133666.3586 5853.9181 7542.1818 9868.3996 6023.5674 2450.3627 7465.6607 147886014 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4998.4447 5732.0802 1805.4014 1805.4014 2223.6553 15322.8196 1990.8304 256728218 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 3313.119 2342.8081 4277.4823 4934.6197 3562.1153 3030.7258 12382.3133 2370.4606 2958.9924 6285.7106 2692.6571 89512416 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2454.543 302039047 amyA Carbon Cycling Carbon degradation Starch Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 24658.1424 2867.3926 3665.3323 6137.4881 63980.6287 4357.5525 2858.6368 2858.6368 3262.2045 6795.1549 5081.5562 6851.4702 2827.6169 7348.2574 11107.3942 5564.6588 6917.845 3010.3097 3533.8353 7706.4841 2447.0514 10574.1967 422314371 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2371.7041 5655.9121 5523.5172 5125.209 2809.9861 6158.3232 4620.4357 5099.007 2777.783 3814.6025 2744.2703 6633.0691 337759296 pgk Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 6521.267 2317.7103 7007.686 15232.445 3171.7824 3964.9728 2829.8147 2829.8147 3930.6944 4993.8145 2442.0047 2083.4707 377575944 nfsb_2 Organic Remediation Aromatics Nitoaromatics Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 2946.4587 61150.6148 5138.8011 9164.7001 4077.8685 5344.6647 2470.6511 3000.4296 6172.8253 164428488 lactase_fungi Carbon Cycling Carbon degradation Lactose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 3499.9245 3529.8257 2551.9783 3298.4243 3754.8893 2528.5037 93783.9031 5047.4686 5676.9035 3674.6152 9074.1851 4865.2544 4700.6091 7695.0001 8156.4143 2468.7037 6299.3012 2460.3201 10854.3455 4640.4059 6394.928 2521.6862 3549.016 3851.4368 2796.1687 6434.517 393757828 arsc Metal Homeostasis Arsenic Detoxification Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 2019.3896 3798.678 3410.9512 2724.4982 2724.4982 3311.0635 4466.4991 2629.6885 3332.6856 3541.5028 5038.0605 2007.5098 339480793 ppx Phosphorus Polyphosphate degradation NA Leuconostoc pseudomesenteroides KCTC 3652 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc pseudomesenteroides; 4861.8236 6865.6868 6060.241 56809531 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 40670.1184 3909.1859 7647.0767 307729860 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2390.3045 3201.3017 5299.2075 2619.8261 364981.0357 5654.048 2057.7471 2057.7471 3810.0834 3681.3711 32114.7056 7260.104 8458.7261 16345.281 4351.2619 4642.0071 1955.193 2556.8764 3263.0277 2354.3961 881635 actin_amoebozoa Other Phylogenetic NA Acanthamoeba castellanii superkingdom:Eukaryota;genus:Acanthamoeba; 3677.1234 24139.296 4096.2619 357408837 badh Organic Remediation Aromatics Other aromatics Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 2222.7336 3744.0414 10732.7581 16734.1268 9988.3175 4585.45 3740.7305 4763.5748 7615.7157 2254.4007 6529.3268 422314037 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3656.1174 4794.2853 5791.8122 4218.1344 2102.1116 3280.9268 139003456 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3764.0506 69509.5638 5990.1132 1941.7852 3035.3807 160879333 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 7215.3565 3039.468 4260.3589 3775.5628 7185.4869 3732.0284 244961.829 3936.6549 4458.6903 2425.5237 2425.5237 15124.7113 6656.6397 3332.1607 7170.8566 6449.713 6026.8516 2859.0783 7808.135 5026.5338 25956.4861 5459.3961 2654.7052 4336.3537 3035.0318 5570.69 168333217 amyA Carbon Cycling Carbon degradation Starch Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 6915.956 353192268 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3551.4043 4753.6374 27530685 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodobacter veldkampii superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 2753.7805 5230.5244 104550.4908 4070.3938 1850.5853 1850.5853 6837.1354 4178.1424 3989.8651 59031.8022 7240.9233 2254.1547 5935.3888 8735.3835 5328.274 2928.975 2676.7463 3524.54 2422.2274 4776.1979 260610937 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 2448.9195 343499742 urec Nitrogen Ammonification NA Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 1889.1305 92684.8845 340788160 chitinase Carbon Cycling Carbon degradation Chitin Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 8310.5607 2572.1072 2426.9204 2426.9204 3165.9012 3108.313 3468.8138 170655847 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 2495.7014 2428.2015 17729.4927 3285.3315 4564.884 8064.5635 5238.9407 2704.3798 311695465 alkb Organic Remediation Other Hydrocarbons NA Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 2869.9254 3809.6788 6647.4362 312215901 nitrilase Organic Remediation Aromatics Other aromatics Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 2449.773 2057.125 2991.2942 114295.7304 4249.9057 5878.0131 4007.4408 4268.2363 5553.2008 163962116 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. 1C01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3199.787 7119.0031 12822.9383 4167.7466 2122.1675 8869.9253 4141.8926 7216.5772 2565.6697 3950.2264 170095617 ppx Phosphorus Polyphosphate degradation NA Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 4941.4371 2411.5447 3717.0405 4374.5138 118749.869 6426.1991 5383.419 4685.0995 3736.9128 9407.7266 6607.5615 6515.9669 4178.0604 2628.661 4061.4657 9113.3474 3504.8576 14185.0073 7941.3364 12831.835 2785.1637 5909.525 3385.1371 3172.3732 4679.7729 381367596 amyA Carbon Cycling Carbon degradation Starch Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 25000.4702 2628.0564 33391409 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2095.7623 2600.429 5187.7293 5978.8694 86406.1675 3711.8041 3742.5484 3226.0872 7096.2054 5172.0189 12748.659 4992.962 5528.1973 17759.571 6356.9205 3334.8317 15196.4428 4957.6525 5981.4156 3181.8134 3980.7151 3048.1732 2253.2935 344341536 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5440.1052 2254.1895 2025.6536 3268.7363 61150.6881 4867.9675 8606.8968 6124.1354 4321.6053 6439.5441 5645.9669 3072.8774 6671.3582 2111.6127 10153.6862 4387.3228 6565.9412 3132.9878 3088.8584 3725.5545 2260.3143 7139.3863 328841848 arsc Metal Homeostasis Arsenic Detoxification Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 10803.8535 18403.5612 3230.3274 3230.3274 3341.0936 6355.4764 5655.1349 3547.5061 4442.557 332981403 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 2773.5611 2125.0317 12973.6544 12973.6544 2487.0653 6932.1292 3577.5985 3542.0715 4934.5534 2518.3066 4852.1955 4887.1265 6415.0591 6012.4625 15698.2078 92119207 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 2163.58 6083.3149 6334.3613 5287.5747 4527.8183 4527.8183 16612.528 4563.371 2271.5507 2708.2595 8367.638 14412.6976 3122.6187 46917282 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2689.2341 224027969 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 13996.8851 39239.8047 224540390 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 3298.4211 2209.9334 2209.9334 4644.2554 112464169 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5086.4774 70056.7882 3463.5611 6178.3694 4640.5548 12997.5772 2718.4938 2315.3849 2492.3802 5350.0638 340028805 tktA Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 4125.9973 4671.8018 4272.1431 5244.7944 4412.5528 2725.9969 3596.6693 3161.9915 3459.7691 5066.3511 375140302 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7210.0934 11069.4195 11069.4195 3320.5739 3796.727 4865.2482 2994.9709 261212724 pula Carbon Cycling Carbon degradation Starch Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2365.1558 399909772 exaa(moxf) Organic Remediation Chlorinated solvents NA Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 2970.9464 323139616 mer Metal Homeostasis Mercury Detoxification Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 93693.8332 7537.7196 2253.9353 145010381 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2954.9315 39121.3232 32760.292 184193225 TIM Carbon Cycling Carbon fixation Calvin cycle Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 4002.4285 3077.1662 2086.1374 5499.326 6216.9586 2511.1764 6793.5717 2486.451 5071.7206 5534.161 7015.549 154701389 ara Carbon Cycling Carbon degradation Hemicellulose Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 2695.3682 222543395 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 2446.6781 2838.5079 4649.7271 74148.0599 11140.8648 4442.8567 4522.1745 8460.6401 7268.6167 4988.9481 10716.599 7365.7632 2668.8088 3169.0029 9217.5815 3277.3901 10705.0612 8064.1817 7981.4487 2161.6316 4437.4445 6214.2756 3394.6522 13217.2852 281420785 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 7416.1418 3875.5027 3875.5027 8214.1428 4957.0196 2326.2177 11354.859 5120.0348 5269.7703 3129.4817 114562494 cellobiase Carbon Cycling Carbon degradation Cellulose Shewanella frigidimarina NCIMB 400 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella frigidimarina; 2119.8842 6392.729 2044.4127 3278.1136 85858649 ben_bcla virulence NA NA Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 2710.813 5602.9654 5618.9391 3959.7062 2527.9999 6896.8927 6668.0955 2224.9072 5896.0493 2365.6093 1768.3493 92430144 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylomicrobium sp. HG-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 2231.4523 2923.6506 23964.6638 3904.6233 3685.1835 3649.2585 3784.4234 3930.4628 6942.581 2284.6456 2918.3235 3353.3284 7764.5715 3834.026 2429.239 322435000 ophc Organic Remediation Aromatics Aromatic carboxylic acid Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 37193.6883 19717.5255 91781130 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 8366.8838 2393.0481 2368.2459 3085.3524 8820.5581 221737890 ara Carbon Cycling Carbon degradation Hemicellulose Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 20392.3498 15162.615 2082.2691 2082.2691 9747.4915 78065843 phdk Organic Remediation Polycyclic aromatics NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 47126.0381 395649843 pcag Organic Remediation Aromatics Other aromatics Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 1765.1763 6595.3586 4046.1955 18451.9157 210621788 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Clostridium] hiranonis; 7033.3052 81246401 hcab Organic Remediation Aromatics Aromatic carboxylic acid Shigella boydii Sb227 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella boydii; 3228.5627 4782.0353 4218.4554 3998.4094 13343.8615 71407.0135 7698.2625 2187.8572 3288.306 6079.4452 7825.7028 153962908 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 4409.5486 5634.5646 11576.2995 6381.3159 4123.3654 5360.3652 2995.7875 82410.3738 4233.3866 1921.0981 2901.9317 9524.3969 5519.8074 226358381 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2501.5068 3455.85 3597.5915 6465.9787 4388.3247 2902.4096 2450.9386 2160.981 4155.2829 2577.2104 6865.6592 242821909 nagg Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 4688.631 5678.8031 4094.68 2498.0839 9104.2416 2433.6609 4833.0576 161075849 hao Nitrogen Nitrification NA Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 6093.1322 205320826 tetx_resistance Virulence Antibiotic resistance Degradation uncultured bacterium HH1107 superkingdom:Bacteria; 4517.7255 305381930 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2137.0104 1948.2074 10226.6794 116333.4528 4214.9789 5535.5466 9469.8143 5047.3974 9423.4032 3125.7474 2298.1117 2813.3694 7279.3402 4594.5842 5722.5556 1991.154 3798.1498 3246.2434 124362533 nifh Nitrogen Nitrogen fixation NA Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 2887.6115 4065.5558 3350.8786 95267.7799 4287.6222 11364.7699 3151.693 7277.5907 4939.8862 4748.2328 2254.6076 7209.0462 2705.8527 6041.9173 7331.8825 1930.3879 2682.7943 4028.4822 2222.6538 5967.0506 365748133 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 2697.2641 89513024 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2736.9616 2654.2631 4559.7329 4050.7995 2775.5114 3090.0814 4522.5245 421953098 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2065.1038 5372.1546 3620.9931 3633.8161 10287.4376 2567.92 78169697 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2117.2089 20829.5231 3067.8383 3567.9976 2625.7674 66031.1032 3934.5066 2435.5528 2435.5528 4620.5899 9368.8894 6424.3059 10081.0962 13968.3168 2827.3794 2926.7445 3037.7479 25045818 cpnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. T4A9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2291.553 18034328 dsra Sulfur sulfite reduction NA Desulforhopalus singaporensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulforhopalus; 5446.7912 3552.1248 6211.3365 24338.2171 30306.6892 97165.6681 5715.5849 9501.8722 4749.9079 5250.0477 6405.2152 2707.7438 7892.0259 2508.3547 14331.2671 4410.4107 6310.156 3923.9979 4290.151 4195.7136 3547.6206 7347.5699 312442707 amyA Carbon Cycling Carbon degradation Starch Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 2520.5784 4869.6083 5978.9193 4970.5286 4998.9241 6905.5759 2479.0108 335045977 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 108 str. F0425 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 108; 5333.3266 4536.5985 2890.3811 3533.3527 3725.5243 3072.1031 4684.842 17368.7703 346994249 linb Organic Remediation Pesticides related compound NA Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 23623.3842 67211.0356 3613.7122 1756.9212 387590879 terc Metal Homeostasis Tellurium Detoxification Bacillus methanolicus MGA3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 4638.193 3455.3295 6089.8812 5314.0843 4224.2055 3404.7274 5422.9715 82746480 amyA Carbon Cycling Carbon degradation Starch Clostridium beijerincki NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 4477.5856 1742.1853 1888406 Cl_peroxidase_fungi Organic Remediation Aromatics Other aromatics Embellisia didymospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Embellisia; 6081.9046 5325.8804 6576.4545 2770.6814 123544.3033 4352.0385 6944.3016 2355.2851 2355.2851 3978.4398 10673.6661 6124.1959 8423.4698 7689.9097 8163.4917 2963.1283 3494.2963 7238.2411 3175.823 12320.6542 8137.1517 9831.1968 3062.6097 4136.6809 5846.8277 3473.8832 6773.6391 329896319 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 23404.6439 5658.2309 4741.8031 2412.5169 2412.5169 18982.1764 3129.8046 2841.4208 6202.9149 2503.4241 5949.9522 373852115 dehh Organic Remediation Chlorinated solvents NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 6870.3688 294673861 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 4281.7913 7151.2631 3869.5352 2425.8872 2425.8872 3248.6206 7319.6402 4624.4899 2390.0114 2112.6913 4124.9967 6722.4628 3545.9931 4193.8451 8221.3735 30911085 endochitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 2045.6004 1970.4028 157361210 nifh Nitrogen Nitrogen fixation NA Bradyrhizobium sp. CCBAU 23011 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6799.5914 119671542 pgk Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 10864.4591 4320.0451 6762.6876 3596.3121 190688338 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 5664.2161 6785.9267 3946.7038 4697.6939 66334.1463 3678.4202 6176.6985 6176.6985 5343.6656 13788.5952 5399.2322 7540.5541 10076.5169 4956.3734 5119.4329 10285.0919 4514.7653 15265.7248 11080.5575 12651.7867 3768.3218 4889.1031 5091.9819 4744.5909 19731.5196 124389567 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira; 3288.7733 3686.3624 5025.5835 2848.2658 4600.9329 4633578 nosz Nitrogen Denitrification NA uncultured bacterium 696O superkingdom:Bacteria; 3407.3764 2939.0918 9920.5178 19651.558 4044.411 8709.166 8356.5136 8764.6377 6229.8737 2471.0558 317505240 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 15465.8363 21544.9428 7083.3561 4615.815 2509.6252 3108.0839 3430.8928 46389813 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 3972.099 7798.2896 12334.7099 100972.2129 6902.2043 2096.1048 3272.7595 170290344 chitinase Carbon Cycling Carbon degradation Chitin Candidatus Korarchaeum cryptofilum OPF8 superkingdom:Archaea;phylum:Korarchaeota;genus:Candidatus Korarchaeum;species:Candidatus Korarchaeum cryptofilum; 3788.3417 13608.1368 3714.8831 6161.7825 61628.4221 3429.3557 4995.5 3023.511 3023.511 4200.4197 6661.6481 4635.8781 5271.4129 5792.2044 4655.1513 3300.1378 7232.3742 2277.426 9999.1787 6268.1503 8032.2345 2377.1796 5037.0326 5066.7903 2744.8654 5632.1315 257780396 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 2843.8996 3393.9143 4549.2897 307601278 protease_serine_fungi Carbon Cycling Carbon degradation protein Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 2260.132 13601.9307 3627.2199 2542.8179 88860514 chitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 2104.7713 7470.9788 2428.8606 2854.2638 227542472 ppx Phosphorus Polyphosphate degradation NA Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 2886.2535 4926.6654 3498.5021 4316.732 4276.2994 2324.46 2146.8756 4739.2558 4791.7202 389685702 fosa Virulence Antibiotic resistance Degradation Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 2147.0594 5631.0156 6104.1534 7464.3134 3141.455 380768179 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 2886.0812 2982.2204 9352.9352 71086.3482 3642.6201 8484.1164 2803.0468 2803.0468 4155.5475 13000.9053 9295.3079 6151.2201 7654.3026 7276.5226 3505.8004 3651.6673 12024.4124 3711.419 10353.2866 2503.1229 4999.9976 5789.1256 4907.212 329897919 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4400.0271 2928.337 2928.337 2601.1254 6242.2779 11664.1535 3418.5503 2622.2226 2510.4877 219676993 proO Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2475.4905 65752.7199 205375151 dehh109 Organic Remediation Chlorinated solvents NA Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 2666.4649 3618.5776 3569.5543 211905903 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2687.4156 65248.9645 296120023 pcpe Organic Remediation Herbicides related compound NA Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 2036.5884 4032.3457 5940.9536 2044.2217 5792.2485 26985948 soxY Sulfur Sulfur Oxidation NA Chlorobium vibrioforme f. thiosulfatophilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris vibrioformis; 3962.9507 6456.3958 6184.8554 6023.5149 4822.7826 21838.7072 2380.8516 291196994 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 25022.3622 23867895 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 3376.1485 4060.2864 2546.1254 5611.187 72114.3695 3287.3747 5113.6823 8878.4864 5596.0654 5902.1439 7028.8471 6922.1212 5642.2197 2643.8486 5633.9224 3047.2571 9901.5939 4943.0003 6596.2194 4948.7426 3544.8407 2993.2123 3125.0504 5883.2127 212542935 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 1779.0638 8638.2793 55829.3636 6477.5878 3839.9161 2250.7473 163811759 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5070.1996 3527.5251 4360.0435 2494.3955 147886128 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 6511.223 24393.9642 7588.9668 7588.9668 5746.3826 6105.2736 8565.5309 4529.0588 3655.7331 4412.4017 261879623 heparinase Carbon Cycling Carbon degradation Heparin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 4707.2089 300786208 mmox Carbon Cycling Methane Methane oxidation Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 2661.9385 4242.6745 5243.6576 5243.6576 3843.8505 4841.5569 358385216 linb Organic Remediation Pesticides related compound NA Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 6249.0389 3171.2634 4141.2935 54124.0007 4013.9584 4193.3427 2423.886 5873.5935 4392.3066 5366.4364 8291.6441 1912.022 8377.5402 3926.9489 6493.5311 2524.4453 3233.6846 2898.7364 4184.2223 295112210 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Synergistetes bacterium SGP1 superkingdom:Bacteria;phylum:Synergistetes; 8505.677 10477.2935 13804.168 14393.5996 12541.1119 196178150 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 2184.4739 3403.2153 4087.3624 103447.3855 5755.038 6216.027 5712.8038 10545.4768 5138.622 2145.7565 2795.3112 3473.5572 2648.9975 99030593 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 2158.0513 5382.0722 337764110 amyA Carbon Cycling Carbon degradation Starch Streptomyces cattleya NRRL 8057 = DSM 46488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces cattleya; 4273.7747 256822605 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Kangiella koreensis DSM 16069 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Kangiella;species:Kangiella koreensis; 12943.3924 398232393 pcag Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3367.3715 2983.9688 2908.2077 4190.2394 5496.1017 3704.724 5722.2212 8424.2636 8424.2636 6788.6464 5005.1934 6982.7657 2732.735 9063.3869 23951.3258 4653.341 8469.7359 5229.3142 5568.4605 22690.7046 396935292 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 64278.8735 4405.0698 6673.4182 7672.8265 11000.2301 5590.1455 5590.1455 5288.7948 26865.2003 2831.3188 2982.0598 2949.7155 17213.9811 4412.7973 119512626 tktA Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 2582.5231 18961.8678 18961.8678 3637.5284 7153.3372 2795.8378 4692.0649 83949534 ppx Phosphorus Polyphosphate degradation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 2303.2121 3766.6483 4436.6805 5200.3375 5358.6115 315132123 ppx Phosphorus Polyphosphate degradation NA Helicobacter felis ATCC 49179 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 2216.0167 2703.6971 65945.4026 87959.2821 2303.2872 2303.2872 5606.4709 4820.9276 4073.4346 82256.8068 6069.2746 1708.5702 3874.2359 2892.643 2548.018 156865943 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 2200.5204 6498.9154 15129.2749 155622.1137 3125.1555 3125.1555 34148.9554 6525.7242 4152.5823 10233.866 209486800 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 113492.4659 3750.3649 4082.1209 2748.1318 12285.2851 2756.7803 6874.4318 388536986 badi Organic Remediation Aromatics Aromatic carboxylic acid Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 2192.7996 2567.6608 3060.6105 74471.1948 3742.5597 3009.8214 5454.7987 3328.3957 3328.3957 2871.1217 6590.0148 4142.4122 2254.1442 10100.0419 6251.6721 6059.5568 2002.0999 3794.5262 7181.7262 225042210 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 4741.5006 7898.4166 3404.8727 7904.0626 4877.8959 10106.8009 16708.6924 18151.9257 12756.588 12756.588 52012.002 5677.2529 10941.128 5773.4849 8543.1916 19024.5993 5596.8956 39419.6165 5591.4729 6978.2054 2377.221 8459.6284 8568.7155 4800.0526 18340.0929 374391511 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 11015.2152 317468138 ara Carbon Cycling Carbon degradation Hemicellulose Leucoagaricus gongylophorus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Leucoagaricus; 3160.6346 3996.3386 4249.089 5038.2004 304346691 pula Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 1944.5992 5713.1229 3882.2776 387937046 amyA Carbon Cycling Carbon degradation Starch Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 3255.2335 11492.7548 8012.3054 5736.1914 2328.6217 2034.8943 114321991 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 3835.7011 6030.3549 2906.1317 2906.1317 21306.8932 11134.6677 11547.1417 387127856 Sir Sulfur sulfite reduction NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 4058.2191 384072960 ppk Phosphorus Polyphosphate synthesis NA Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 8395.4692 119391639 narg Nitrogen Denitrification NA Pseudomonas sp. D2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3573.3537 365792020 dsra Sulfur sulfite reduction NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 3042.0198 2224.8235 2690.8727 3749.8671 3421.814 3567.184 2379.3781 6030.469 2300.4948 2501.3981 3387.6623 2183.9701 322700096 nagg Organic Remediation Aromatics Aromatic carboxylic acid Metarhizium acridum CQMa 102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium acridum; 3643.2227 2312.4827 11295.8859 4776.2901 4776.2901 4213.0744 3362.3385 5192.6466 2424.4491 1979.5118 3314.8856 114798640 narg Nitrogen Denitrification NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 5050.4894 4517.4277 9492.1433 5379.6496 3380.6174 2195.8542 386396591 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3101.8198 1946.5352 6672.9705 71315.7958 5250.2457 6499.9749 4357.0115 2256.0812 2256.0812 3443.4057 7671.9232 6003.9835 5123.7974 11076.3649 5719.24 3727.7462 2490.9229 7897.9731 2152.7885 12256.7004 6247.9113 6124.9591 3389.0771 4120.9925 4955.9667 9718.448 354585546 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4068.6714 5773.9986 2016.3029 5261.3233 5356.9517 5095.5929 5208.8199 5078.7695 1871.7742 1871.7742 3843.0789 9701.6213 5953.6911 3831.4069 11466.4226 4098.6485 2120.8521 5916.0498 5328.2665 3346.4394 11905.0158 4364.6798 7037.5823 2550.9921 3228.2935 3718.7182 2987.9292 8413.0081 111063445 pec_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 2427.3438 30419.5917 6384.2642 6947.3601 66952.3429 4366.7868 6435.8543 2028.9708 2028.9708 6358.254 3384.9185 4348.6373 2647.4972 2708.128 3100.938 4010.4931 1914.2332 5342.29 288561017 gdh Nitrogen Ammonification NA Methanobrevibacter ruminantium M1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobrevibacter;species:Methanobrevibacter ruminantium; 2716.3736 59992.082 2355.1328 7018.2028 7848.5088 385191625 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus sp. SK140 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 2633.8146 6301.1219 3568.5494 67089.3851 3696.0268 7504.0808 3621.5473 4166.2084 13960.7632 3227.2975 4692.586 1990.2069 2855.6241 2759.0983 8168.0664 390453515 atza Organic Remediation Herbicides related compound NA Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 1996.0612 62084134 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3138.2096 3721.7875 2794.5965 3168.9682 71738.4915 4464.513 4495.8456 3105.2718 3105.2718 3184.0847 7009.7474 10425.6682 4953.691 7386.0496 2024.3243 5808.5881 2683.0212 2753.222 5254.5706 134094327 ppx Phosphorus Polyphosphate degradation NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 6555.7286 13689.3332 374702802 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2638.8454 3999.5863 3323.6635 1963.3301 1963.3301 6271.4954 5676.8653 3160.3752 2592.6416 3256.4427 4507.1413 8013.7855 2272.6418 3388.3592 3684.0217 2066.2446 162284115 pgk Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 4848.64 4972.7028 2027.3585 4651.4386 1976.9089 2368.5792 2255.9733 145257148 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 2259.8953 2901.8002 3605.8021 14703.6935 95500.7308 4911.947 3800.5932 3203.2385 4093.3828 4364.883 2447.7915 5607.0505 4846.0384 6585.0833 2817.5095 3464.7569 2266.4551 5089.3688 33863271 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7371.7064 1905.1677 3433.6576 7785.9826 65534.3346 9107.7659 4171.463 3726.7394 4278.5179 2312.4121 7464.4359 5124.3262 6325.0536 2749.63 4692.2178 4362.8395 6351.3653 40063094 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium 561 superkingdom:Bacteria; 11870.9893 5290.222 2259.3679 2326.4201 222543419 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 2486.4151 3619.2482 79618.5664 5927.5615 2424.5998 5647.7483 23631.8541 4476.766 2626.8699 2518.2475 5237.1189 2192.9617 7919.9867 173037.5189 11303.6862 1818.1787 3341.3437 1935.5587 164456200 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2083.7447 2930.8906 31064.3328 4404.9239 3180.6501 3935.9427 2449.5064 8570.7433 4333.8471 5703.8169 1951.3197 167516164 mer Metal Homeostasis Mercury Detoxification Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 2340.464 3479.1477 3103.5407 3103.5407 5904.445 3808.3539 4180.1654 6468.098 4705.9946 2961.6308 8778.0174 5094.5553 2699.2899 3216.293 3120.4096 5060.5007 94471241 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5080.5926 2974.8238 5096.9963 6060.4401 3523.1861 3523.1861 6813.0308 28233.2374 3661.1739 3197.3302 3595.4061 6823.4793 8251.2445 296329472 phytase Phosphorus Phytic acid hydrolysis NA Bacillus subtilis subsp. spizizenii ATCC 6633 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 2254.5522 6055.2772 198254500 phn Organic Remediation Herbicides related compound NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 235526.8927 4275.2627 3116.679 4278.6092 6648.3346 88782.6876 81862.726 6110.0488 10434.9586 4654.2733 3132.4296 3132.4296 2733.5869 11514.5992 3603.9561 3525.4637 7609.8921 11210.8126 5725.6471 2944.5293 9975.251 5452.058 12309.821 8359.4058 2925.4549 285141.2831 6499.7073 83944265 urec Nitrogen Ammonification NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 51464.3168 14078.2671 35142.5711 47987.4903 333919014 amyA Carbon Cycling Carbon degradation Starch Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 2346.0954 2233.1623 5415.1905 3876.8907 2887.933 2793.2986 24822.7226 2587.608 1771481 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 3153.0776 2074.0655 3464.0188 72628.2742 4510.3581 7722.5426 5809.6957 3994.8685 366052536 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus suebicus KCTC 3549 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus suebicus; 2841.7455 4382.4163 5308.3407 3687.5368 4239.2832 4239.2832 2593.4375 6383.1565 4821.2287 6083.4289 2910.2468 2724.147 5276.1737 4646.9201 2737.3131 2902.9866 4857.2892 146188539 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7597.0857 9274.5702 2675.475 218174855 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3890.1855 2194.615 14659.2373 2404.0763 2815.7185 2815.7185 5790.6302 17198.2239 3301.1066 7366.8578 8470.3171 4587.8776 5060.0303 16209.4065 6534.2746 126233845 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 4669.3696 20045.1317 3709.8148 6769.3798 2119.3992 4879.0817 3600.7527 114328828 urec Nitrogen Ammonification NA Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 5017.7743 3255.3173 2849.5213 14546.186 5828.0128 2932.4295 103686.735 5662.728 3655.8007 3505.9595 3505.9595 3135.3124 8240.8171 5580.9494 6600.9669 9067.3797 4928.1954 4085.1598 4206.2292 7531.3881 3520.4827 15714.9537 5804.8863 7561.7511 3518.7037 4406.914 6118.7194 3117.6395 9471.05 213952625 amyA Carbon Cycling Carbon degradation Starch Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 3037.7391 3583.3627 3984.0177 6117.9705 4941.0144 6327.8594 2112.483 5326.4314 2056.9606 2382.733 2481.8919 2739.9289 5063.5855 261857226 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18829.8339 4254.4953 3173.2725 3492.0277 5695.4854 4383.2917 2123.7372 6717.2874 9227.3367 3936.7313 2005.079 2913.0645 2051.4718 4348.8735 385274958 mer Metal Homeostasis Mercury Detoxification Pseudomonas sp. K-62 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4040.1306 320529313 amyA Carbon Cycling Carbon degradation Starch Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 2939.5139 357559973 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 2777.2692 2922.5766 4539.7198 5727.6984 6983.0686 3905.2628 4708.3841 2730.7479 7924.4581 1771.1187 2711.1705 359420722 ppk Phosphorus Polyphosphate synthesis NA Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 2218.9341 4414.2878 3171.9933 4650.9914 2258.9004 5199.9769 3201.7911 2068.0516 4285.5584 349786232 ara Carbon Cycling Carbon degradation Hemicellulose Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 5832.6546 3921.3331 5862.8219 26121.2212 3114.6616 402219642 nagg Organic Remediation Aromatics Aromatic carboxylic acid Dacryopinax sp. DJM-731 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Dacrymycetes;order:Dacrymycetales;family:Dacrymycetaceae;genus:Dacryopinax; 2181.9821 169615246 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 2331.3297 3647.3592 61433.9249 4583.8697 2982.7488 2982.7488 2451.3753 5593.1863 5898.2744 359270427 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. GT-I superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 1787.4415 6999.7126 4395.769 228551851 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax dieselolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 3264.3898 2536.4286 3597.9121 5136.6235 4183.1726 3690.239 73090.1304 4213.5562 12912.0892 3498.5101 8363.7007 7097.4494 6909.5321 5581.1079 21128.9679 6465.7976 12707.5808 6410.5942 8328.3788 4165.1022 6410.9161 2480.3483 9163.4655 24421341 nirs Nitrogen Denitrification NA uncultured organism 8195.2292 3795.5027 5132.2478 3518.5148 3917.0952 8772.516 8772.516 4452.8823 7674.8344 6505.9876 4005.7817 2164.7638 3536.6102 151302137 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio ferrophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 108296.3449 126169.2023 408482411 nitro Organic Remediation Others NA Pseudomonas sp. R81 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2278.5188 4108.3774 55978139 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11084.0921 3896.5696 2199.2532 2199.2532 10585.8291 9214.8269 5174.7281 14271.9515 4923.0363 2569.0387 61307.855 4063.0543 4661.6315 8097.4963 5664.2201 38232594 urec Nitrogen Ammonification NA Yersinia frederiksenii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 19404.2134 3927.1752 323472837 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3925.4522 4001.145 2380.9394 5963.0237 3093.3866 104937.2485 5527.5579 4979.6646 3537.8886 8344.079 7743.9587 4953.2345 5350.9911 5483.1735 4222.7465 2732.4903 5888.1202 190279.4049 709783.2844 4850.0795 5191.0937 3940.7288 265808.0698 6438.397 2684.2346 5190.4538 227191394 ara Carbon Cycling Carbon degradation Hemicellulose Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 5970.2469 375147066 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 3158.8846 2551.9454 3939.1402 3389.5514 7916.5036 5647.0132 4178.7617 2269.9207 6284.2738 2536.9725 7246.8916 7050.0101 2647.3713 3485.359 3717.9302 2517.5757 6149.8323 239831656 urec Nitrogen Ammonification NA Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 2949.4599 2751.8406 5207.8884 31172.0719 4785.18 3775.8789 283705.8389 12586.1876 3718.3587 3266.9359 2831.2394 5181.7283 4648.7006 6110.1239 2917.0615 65985.0806 238549552 chrr Metal Homeostasis Chromium Detoxification Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 2613.0227 6242.0305 4272.2159 133827.1583 8771.4103 3422.7768 74500.0154 7126.0007 4756.2267 9835.3317 3742.0138 253778198 amyA Carbon Cycling Carbon degradation Starch Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4244.2356 3054.6895 1937.4604 4830.4475 2276.3963 4524.0758 4405.7404 3324.7104 4446.7825 2902.0652 2609.1878 4605.3284 359287146 alkk Organic Remediation Others NA Geobacillus thermoleovorans CCB_US3_UF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 2522.0203 7191.3831 4686.7948 3633.3679 319946387 amyA Carbon Cycling Carbon degradation Starch Streptococcus australis ATCC 700641 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus australis; 1794.4413 50404.9234 3286.9622 2185.107 2623.471 4283.3667 209966545 alkk Organic Remediation Others NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 5326.0551 4894.5673 2536.2228 4755.1528 5254.5871 113736.5884 5477.6513 4925.9315 6845.437 19828.6045 19828.6045 5828.1724 4830.0221 5647.9259 2374.8159 3419.6972 5330.4846 3089.8601 8867.9909 14152.5845 5542.4314 2190.6483 4125.1016 2911.7512 2323.3181 254820114 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 3726.2857 2758.1727 2220.0528 3382.88 5581.253 2156.0018 4619.6183 7099.0133 3150.1533 6439.6375 5283.5133 6665.2685 5879.2271 5265.3432 2476.3937 6341.3514 3167.805 9067.1734 4508.4414 6104.2089 3574.114 3549.9599 2875.0164 4844.3655 359306055 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 4257.6766 2901.1065 2424.9843 46520005 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6441.0847 4191.8213 16143.8558 5185.5366 1662.3322 375266691 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1944.4647 34924.0865 5547.9476 7759.2673 12699.8571 146310335 phenol_oxidase Carbon Cycling Carbon degradation Lignin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 2213.9328 4649.8778 34102751 chitinase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 2551.1954 6577.848 338903028 urec Nitrogen Ammonification NA Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4953.1697 5271.3702 5615.8186 4343.7771 13898441 dsra Sulfur sulfite reduction NA sulfate-reducing bacterium STC superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2211.9389 2354.5722 67200.9073 7048.4851 3787.387 4983.0481 3488.4006 6166.1243 9352.4559 5973.6406 6290.9162 2210.9438 3355.5508 4412.936 255035289 xylanase Carbon Cycling Carbon degradation Hemicellulose Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 2478.0587 4119.0068 126470044 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 18214.6596 3104.8099 20026.7205 23279.9165 10219.1849 4765.174 9408.8276 10158.5667 6163.5864 6397.2364 5601.9403 5540.6882 6619.5627 16363.4403 6364.9714 3943.4939 260608734 pgk Carbon Cycling Carbon fixation Calvin cycle Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 2751.191 3099.2205 2990.9526 3817.2948 4569.1692 2233.9247 2233.9247 6596.1396 11084.3927 4283.4586 2817.2265 4309.958 10369.1287 11621.3543 7751.2269 2608.8397 3242.378 4238.2709 81299349 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 2337.6712 322390189 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus parasanguinis ATCC 903 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 3213.1756 18296.4757 18800.9532 29512.8066 4478.6686 9848.0068 2289.6928 9757.4287 149136106 sqr Sulfur Sulfide Oxidation NA Caminibacter mediatlanticus TB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Caminibacter;species:Caminibacter mediatlanticus; 2784.8968 2738.6371 5093.2855 5451.1881 77874.8355 6557.798 4571.1207 3084.8935 3084.8935 3847.1653 7751.0591 8703.3326 6888.2324 6837.2158 5144.8989 2821.7976 7487.2757 2686.0752 12413.5497 6928.6231 8032.7732 2821.9361 5008.5339 4231.5752 3981.8265 6611.0931 324317418 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 2257.6433 2784.3567 295100910 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii L2-6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 3971.204 3227.995 3025.2563 5548.3714 7124.9126 5946.1182 10254.4413 5997.3211 82500240 urec Nitrogen Ammonification NA Caldicellulosiruptor saccharolyticus DSM 8903 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor saccharolyticus; 1815.7948 238787611 alginase Carbon Cycling Carbon degradation Alginate Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 3656.3277 54778313 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3054.5303 119509467 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 1980.5988 391860148 cpna Organic Remediation Other Hydrocarbons NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 4419.8374 3928.557 261856445 FBPase Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 2546.7186 211927039 mer Metal Homeostasis Mercury Detoxification uncultured bacterium superkingdom:Bacteria; 3986.9206 3804.5232 16733.823 9928.279 2257.7541 6073.2015 365850626 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 4683.9095 3358.574 69342.0341 4226.8404 7531.6877 5423.6994 4790.4493 4915.1159 5438.261 2398.701 6267.6802 8184.5617 6017.8098 2579.4698 2549.0912 8408.146 398377208 nfsa_2 Organic Remediation Aromatics Nitoaromatics Rhizobium sp. AP16 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 2218.2104 2979.0652 7018.9531 2121.4742 2612.9035 5012.2479 1735.4753 5477.0689 385772978 urec Nitrogen Ammonification NA Sulfolobus islandicus HVE10/4 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus islandicus; 2638.2697 285026911 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 2622.6628 2132.5449 3791.4582 3499.1032 6949.0723 8178.1909 4168.3312 6006.8454 2466.117 6371.291 15025.5959 8579.667 5108.4458 4825.419 17587.222 3615.7643 3412.1353 5483.1912 315014979 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 3562.3676 229968.9467 355529099 amyA Carbon Cycling Carbon degradation Starch Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 2313.516 3246.0761 5954.281 101401.9164 3253.5469 6456.4012 7799.9392 3547.4097 28851139 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 2182.9001 4646.0698 6096.2558 3528.8926 104162004 amyA Carbon Cycling Carbon degradation Starch uncultured Thermotogales bacterium superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales; 4142.1735 6649.3876 490433.4761 6433.3601 5520.7048 5520.7048 3321.2566 3118.9012 10613.7558 63029751 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2553.2183 45746.4041 121607962 vana Carbon Cycling Carbon degradation Vanillin/Lignin Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 5546.5334 3992.9649 4068.3429 9131.4809 1900.3279 1900.3279 11263.1437 5906.8822 3717.9103 4385.9985 7995.8325 5774.953 1792.2672 2439.1609 3391.1709 219666322 dsra Sulfur sulfite reduction NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6748.2687 2308.493 3543.1951 60802.3539 5281.3635 268980.4417 6758.462 5069.6722 4093.8242 4589.5368 2389.1792 6826.6145 14648.3186 4082.9105 3002.3518 8210.6552 3020.8301 354581298 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 2735.7825 2315.3338 3660.8328 80210.6586 4888.0467 2553.2929 2323.4035 9799.8056 6666.8367 2387.2051 3427.6988 3616.7091 5085.1876 52144170 amyA Carbon Cycling Carbon degradation Starch Bacillus cereus E33L superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 2431.3408 303236703 nrfa Nitrogen Dissimilatory N reduction NA Prevotella disiens FB035-09AN superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella disiens; 4545.7445 393761544 catechol Organic Remediation Aromatics Other aromatics Alishewanella agri BL06 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 2854.3835 9448.587 3218.6847 2748.9286 2748.9286 2545.9479 7159.1733 375088045 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dolosigranulum pigrum ATCC 51524 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Dolosigranulum;species:Dolosigranulum pigrum; 1994.1519 5001.3877 4579.2053 5167.0535 7794.3355 3258.5998 358401430 mer Metal Homeostasis Mercury Detoxification Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 1980.1327 336120116 ppx Phosphorus Polyphosphate degradation NA Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 3106.1956 2587.5033 79688.0126 10764.1214 7773.6276 4086.5571 5722.6411 2450.1604 10909.8609 6444.6155 3136.1058 9630.3963 2240.2526 4861.6573 402288 catechol_b Organic Remediation Aromatics Other aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2646.0865 4129.3145 81449.1087 3764.7433 2946.7746 7030.4883 4115.8801 9101.6818 7248.7416 4646.4433 1553.7415 3196.9599 5300.3439 3500.1208 170935452 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 2101.7007 4922.1953 2526.8275 3283.0262 115371545 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1816.7502 10354.0279 2975.4346 113565.5879 3757.6638 2895.1594 5226.7636 4367.8893 8522.2576 6730.6801 5265.0562 2490.2537 7222.3333 9789.3237 12587.1503 6551.479 9183.7886 2841.5389 4750.0379 9291.3478 2175.0459 194032857 nitrate_reductase Nitrogen N Assimilation NA Arxula adeninivorans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Blastobotrys; 5522.8178 251753287 alginase Carbon Cycling Carbon degradation Alginate Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 6193.4978 24711.7902 46319.4425 46319.4425 11196.2995 11186.1854 2786.2538 4085.9004 4284.8821 5954.7085 3257.7354 4207.8285 8225.5108 333937197 proO Organic Remediation Aromatics Other aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 4697.517 5104.7103 2058.6586 2058.6586 4338.4854 2422.5829 3713.1948 9523.2994 64842.0298 225637786 nirs Nitrogen Denitrification NA Halomonas campisalis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7853.1845 5903.1317 2668.7018 2668.7018 9833.956 117630.2952 19409.8538 86142026 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 36771.8105 4176.6929 4643.4371 6091.9004 2251.9305 2251.9305 3063.956 30634.0109 7611.9882 2179.1372 4086.8686 3307.7008 403648107 scnabc Organic Remediation Others NA Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 8467.3 372271584 soxY Sulfur Sulfur Oxidation NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 15683.6906 15069.1382 2254.6239 4686.652 4821.9702 6256.1077 3015.5226 4804.6103 2017.7248 3027.4419 9242.6478 2026.5148 5889.406 2597.4555 4133.3511 359363784 arsc Metal Homeostasis Arsenic Detoxification Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 5585.8431 2339.258 3405.0341 9028.8178 68203.9302 5279.6805 3997.6906 2469.8608 9304.7163 4940.8085 2561.8665 4298.9502 56678058 linc Organic Remediation Pesticides related compound NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 4454.0246 2190.3242 2190.3242 12969.5451 158319959 B_lactamase_A Virulence Antibiotic resistance Degradation Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 2713.3776 2285.5173 67863.6679 3356.5718 6254.1248 3603.8542 4780.3643 2090.1634 4147.1948 4658.1976 1933.3845 3249.0023 2937.5279 2247.899 4897.2606 375317502 amie Organic Remediation Aromatics Other aromatics Helicobacter bizzozeronii CCUG 35545 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 2428.1994 5273.3993 4075.3319 4129.4026 5604.0815 2563.3892 2563.3892 8050.9842 5881.6856 8801.4444 6308.9328 3833.1253 3696.6146 6699.8889 13405.9193 6572.6379 7742.0008 4348.8055 5362.079 4530.2015 3721.579 5654.2595 467046 ppx Phosphorus Polyphosphate degradation NA Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 2549.4641 2214.4155 13885.159 2877.4162 131914.3428 3583.2209 4204.1871 2137.1587 2137.1587 9786.8477 4283.8585 8112.9432 6119.7163 5483.4905 3097.0214 7126.0957 12288.3921 4911.6167 5756.0801 2910.3505 17785.5752 2696.1093 6113.2404 85858091 terc Metal Homeostasis Tellurium Detoxification Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 2620.5937 2701.3482 2701.3482 111050.9463 24460039 cpnc Organic Remediation Other Hydrocarbons NA Comamonas sp. NCIMB 9872 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 13423.1391 11314.5964 5841.5741 3023.4342 10865.3969 6036.7952 6036.7952 7377.7476 6044.518 4462.1504 3894.1339 2370.1077 5597.3055 5541.6323 5293.7764 1986.4963 6904.272 4966.592 221738038 nirb Nitrogen Assimilatory N reduction NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 4167.5706 2642.8572 36817.5237 2529.0064 4484.9908 3629.4355 9662.9863 320355026 dsra Sulfur sulfite reduction NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 3386.0975 98632.2242 50721.6342 14852.2544 16723.8109 13667.0993 4615.0448 22259.4948 268160951 endochitinase Carbon Cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 3490.9687 4633564 nosz Nitrogen Denitrification NA uncultured bacterium ProH superkingdom:Bacteria; 2398.0082 7139.4348 10616.2753 2203.8761 2203.8761 9314.2315 182636250 pgk Carbon Cycling Carbon fixation Calvin cycle Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 2658.3005 3064.8555 3064.8555 4201.0398 3219.1159 378747742 aps_apra Sulfur adenylylsulfate reductase NA uncultured Nitrospirae bacterium superkingdom:Bacteria;phylum:Nitrospirae; 3036.1823 2849.2311 8871.4962 4900.0673 7416.1939 4874.5233 6494.4641 6997.0118 2537.3433 2454.5838 3110.3141 5271.4246 159042066 mer Metal Homeostasis Mercury Detoxification Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 3420.2345 2842.4006 3579.7582 129550.9484 4262.3289 3492.6959 2706.4367 6887.3751 5294.8954 5082.457 6523.6215 4253.8717 2931.1245 5637.8966 10108.8898 5465.8314 43935.3444 1975.0081 4840.9197 5274.1646 126708314 phn Organic Remediation Herbicides related compound NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 3440.9204 6531.589 165593.5812 5012.5102 2086.9187 2086.9187 7099.3044 5051.364 34545.8886 1985.0504 4240.047 152974688 amyA Carbon Cycling Carbon degradation Starch Bacillus cytotoxicus NVH 391-98 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cytotoxicus; 2493.4061 2916.1688 3916.9739 67718.4171 5036.9933 4357.0117 3890.4415 8534.2766 4117.5627 4737.152 1951.1925 3172.2206 7855.7964 329964700 rgl Carbon Cycling Carbon degradation Pectin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 2911.0047 2880.8162 83402.6463 3879.2076 4599.2394 14097.8616 6744.0402 6078.7359 2985.4738 10513.5141 2754.7922 9504.8651 21103.1301 8409.348 2979.2071 3357.5091 3459.4241 3123.5349 407717500 one_ring_23diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 3209.599 4330.4128 3894.75205 117828.75395 4731.0192 2866.1628 2866.1628 2556.1076 8231.3362 3620.23 4036.9297 4912.84915 2531.0629 2706.21455 2245.2276 11233.5315 5473.9821 2015.6973 4136.719 3861.4908 1949.8422 4342.9092 342819856 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 2244.6994 4017.2788 3448.5028 1887311.7481 6624.5492 3373.6871 4199.9267 9397.8525 3047.6073 9971.6313 4162.6951 6379.747 2357.9855 3702.0548 178467589 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 8449.848 4355.2057 15935.6332 4260.5492 4260.5492 2458.2411 7196.3132 8100.4231 6010.3279 2207.9168 4378.1839 90022926 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 3555.4216 2489.9012 3737.676 7382.7343 8135.7753 261408149 fosb Virulence Antibiotic resistance Degradation Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2617.3536 2850.5085 3165.2756 4410.7761 100425.3801 4210.5399 4227.1472 2200.5881 2200.5881 2563.4096 7376.006 3436.7279 6777.3445 4584.738 6988.5486 2363.4256 5887.6661 2060.6965 10276.3204 5763.0886 2871.2723 4962.565 3508.8804 3570.9876 10247.0066 291314059 vana Carbon Cycling Carbon degradation Vanillin/Lignin Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 4785.3724 2882.9726 4845.5328 4104.6516 3469.7163 4593.6432 2102.452 2520.2031 8259.6052 2601.7564 28542637 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3753.5047 4906.2556 3316.5547 2216.5787 2796.2785 2015.5108 260866064 dsrB Sulfur sulfite reduction NA Ammonifex degensii KC4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Ammonifex;species:Ammonifex degensii; 3296.3038 4546.6593 4118.4834 4443.89 94512.8759 3633.6036 20292.2395 8082.6507 8082.6507 8215.5785 5073.5777 5411.0899 6153.7098 2476.3032 10850.0838 11566.0836 8158.1901 5373.3465 7620.2907 2281.5228 3303.0074 7292.4696 257388962 endochitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 4160.8475 2102.4126 7950.2898 4114.1342 203308.3183 4487.1577 12651.0627 12651.0627 9955.99 57962.1492 13290.6035 8533.5739 56383.3792 6688.2541 6530.3756 5727.9682 22068.6992 5397.4618 7832.6704 3076.9606 15081.463 8037.7841 24694.2432 19364.8313 26454332 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 2278.9026 333109343 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium breve ACS-071-V-Sch8b superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 16717.0438 4219.2491 304342748 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 4138.0802 2278.5194 3371.425 100970.2967 7867.9264 2299.03 2299.03 4364.0458 7924.9446 5023.8312 5392.6183 7251.9891 4951.44 2202.1259 5901.9232 5918.2103 5657.8367 2895.7867 4448.6419 2826.5732 9157.9421 288330033 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 2149.8063 224951062 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 9948.491 5463.832 5404.5616 2516.5309 6634.5892 8235.8102 4238.4453 6297.2456 4935.2345 3523.9115 2901.8973 5527.1018 4455072 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas abietaniphila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2444.2242 3310.3471 3370.6942 2791.1229 4348.3814 7578.2398 6385.8286 4887.6355 5610.6165 10827.0758 11048.3272 7905.6043 8912.8952 10105.944 10825.5159 10386.3613 5718.6158 4627.2436 4098.1844 6711.3066 3833.0904 5827.494 386415117 napa Nitrogen Dissimilatory N reduction NA Haemophilus parainfluenzae HK2019 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 3232.3854 2735.8836 2352.191 4145.9263 5848.3042 317049116 tehb Metal Homeostasis Tellurium Detoxification Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 2920.5486 5539.9574 5245.3436 4274.376 7378.3309 5858.1361 4372.5019 27782.1054 6421.5473 6222.834 227192411 nira Nitrogen Assimilatory N reduction NA Lactobacillus brevis subsp. gravesensis ATCC 27305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 2166.0713 3173.3074 4571.7149 7550.9441 1685.9235 3471.3239 2180.5014 4597.3094 126620233 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3290.0569 3514.8303 5814.8994 5457.8829 36291.6958 7235.8914 82410598 amyA Carbon Cycling Carbon degradation Starch Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 12723.7248 71922.1233 5538.2879 4768.3581 3362.0393 7463.2891 6479.3634 123201268 PRI Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 3258.355 68502.2761 4723.5141 4279.505 48677.3133 4733.5195 2485.9021 5659.5315 168195540 amyA Carbon Cycling Carbon degradation Starch Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 3251.4821 3532.6155 5895.8644 15614.2568 15614.2568 6986.3106 313137315 amyA Carbon Cycling Carbon degradation Starch Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 2411.6396 2205.9379 89095880 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3342.7222 308233925 amyA Carbon Cycling Carbon degradation Starch Atopobium vaginae DSM 15829 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium vaginae; 3063.9493 3328.9444 23217.1589 4027.7081 81160.4383 3404.0083 10037.5045 5470.1657 4873.8229 14672.8635 3205.076 2823.2755 3196.4968 6310.5578 8440.9118 3346.3098 6341.9898 4615.3429 3405.6667 6301.2218 335333310 terc Metal Homeostasis Tellurium Detoxification Helicobacter bizzozeronii CIII-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 2234.7526 3611.1148 69128.364 3106.534 4698.4683 6678.9876 4697.8496 17218.3065 4475.786 7119.9461 4896.5741 5474.7 3877.6956 3809.8867 7595.6362 269993792 alginase Carbon Cycling Carbon degradation Alginate Pseudoalteromonas atlantica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4695.3401 3312.8245 162283570 linc Organic Remediation Pesticides related compound NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 2992.9844 2706.2646 5338.5658 4636.3319 64521.2001 4663.929 4596.3214 4692.0684 4692.0684 16035.2448 8532.2678 9495.5027 7388.0606 3713.9144 3465.0506 6622.5291 5235.8471 7884.4892 5139.0741 7837.6014 2883.9111 4107.0225 13099.4512 5188.0531 197925856 amyA Carbon Cycling Carbon degradation Starch Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 21046.0191 4396.6679 5931.5823 5179.6427 2255.0703 78472.9541 5401.2554 3545.5414 4424.261 3463.5374 3463.5374 4270.2711 8972.6398 5047.7785 5003.4394 6541.6513 6228.1524 2985.7633 6182.0203 7068.5062 3144.8536 9485.6698 3483.9648 6652.4641 2852.8484 4488.4275 5245.3546 3963.3137 8343.2996 298243293 Sir Sulfur sulfite reduction NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 2386.7144 16054.6615 50838765 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1959.7519 3871.7823 2911.0758 4719.1443 3613.0329 3071.0194 311774396 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor owensensis OL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor owensensis; 2076.1078 320131850 amyA Carbon Cycling Carbon degradation Starch Solobacterium moorei F0204 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Solobacterium;species:Solobacterium moorei; 2644.4489 2207.5438 2555.8679 298272261 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. D22 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5137.9245 10409.1708 86568973 limeh Carbon Cycling Carbon degradation Terpenes Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2792.3602 3238.6201 4859.1998 5138.3708 5882.3324 3860.8939 3731.8879 3731.8879 4450.7633 4358.7095 16041.0836 7140.3682 2580.6394 5937.5935 7025.425 11638.4347 5156.0208 6275.534 2431.3462 5149.4478 3367.7588 83727244 phn Organic Remediation Herbicides related compound NA Ralstonia solanacearum UW551 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 8331.6225 4091.7208 4746.8342 2193.9912 87475.761 7499.1313 12839.3363 5404.3986 2732.4784 2732.4784 3143.8758 74671.6591 9314.8193 2520.6235 8960.4821 119156.6996 3267.82 15702.0437 5134.3724 8744.8363 4254.576 2528.0933 4809.6387 124514199 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4667.8069 254970956 soxY Sulfur Sulfur Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 2328.7039 3841.8121 3841.8121 315182493 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 3721.6228 3169.3328 6187.9685 2622.1699 5006.8194 2363.6128 2931.9468 4013.9196 4013.9196 2774.7926 7364.3097 4928.4305 7565.4454 13328.7862 2638.2939 4095.7632 4184.5433 17850.6448 4982.7159 6548.4835 2325.0228 5367.1923 9093.3679 388242972 arsc Metal Homeostasis Arsenic Detoxification Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 5256.7306 6827.6348 3597.9404 3682.6245 1786.8875 11394.9886 30269531 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2160.7381 2180.0074 3412.7204 61150.6719 3519.1516 3916.2928 4154.6999 2832.8099 2632.7111 5548.0287 11955.6191 3741.2077 2960.3297 2502.2458 198404322 endoglucanase Carbon Cycling Carbon degradation Cellulose Cellulomonas flavigena superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 76709.4821 2905.8961 4015.7342 1966.4719 1966.4719 6558.0206 3760.5824 2308.3924 5085.014 3848.4719 1976.3399 4471.1667 2094.0151 298537420 amyA Carbon Cycling Carbon degradation Starch Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 1741.1866 2874.5928 2292.2017 11659.3123 6121.8931 6296.2359 9360.6259 5235.1332 6915.1803 3358.2191 3136.1834 309367256 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 3786.675 4047.592 3155.8487 4155.94 65763.9062 3416.8303 6851.2238 3940.1066 5558.1985 2034.6798 6142.7382 2988.5935 3115.0502 2951.2204 2251.3706 4711.4289 261286780 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3046.8605 3312.9322 66351.4288 4026.8079 3873.317 3654.8447 6289.6213 28903.6761 5377.3647 5165.4728 2801.2036 5463.2551 9475.0612 5416.9905 2776.1256 3810.7982 3594.6456 5703.4349 385763780 dsrB Sulfur sulfite reduction NA uncultured bacterium ws643C1 superkingdom:Bacteria; 2457.0024 3808.0258 9030.0629 6903.5573 4958.2291 4751.6041 3573.1524 9496.9803 4097.8941 1964.1517 15718.9423 23764.8355 3860.8661 7251.6222 223585990 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18591.2477 2600.4778 9336.6313 4590.1474 3851.6923 4008.7078 4938.6524 3948.3307 2942.656 8381.2964 6957.5115 6671.1251 74038466 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3768.3582 15342.2734 8623.2411 9163.4984 6579.1321 4278.7671 20804.8338 15712.2014 15712.2014 4106.012 16347.8 6976.967 7694.3774 22716.1858 4770.8893 6367.2226 7092.3136 5944.4565 10528.6523 30502.5052 18296.6293 18543.6995 3773.8562 5035.5387 8235.955 7358.9924 11229.4439 118424401 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4000.2652 3753.942 206602145 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 3220.1079 2785.2579 4536.9117 3547.604 74251.5834 5738.3695 5072.2761 2120.5767 2120.5767 7469.8666 5411.2523 4913.9891 6089.6035 3085.4872 59695.4716 2441.5252 33863.1079 6640.3097 6774.5918 4505.3629 4509.7121 4091.1103 3607.1933 7555.796 329114265 ppk Phosphorus Polyphosphate synthesis NA Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 2983.7803 3797.8869 2908.8868 3338.0994 3857.8179 3290.4393 99190.7996 3535.8662 4666.7839 2743.8704 10245.571 4244.2459 4562.5619 5985.6379 7084.3002 2854.9234 3297.454 6165.134 2834.3637 14794.1286 6640.0298 7212.4768 3481.3797 3531.7053 3877.3323 3391.8394 6467.4638 300113160 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 3735.7944 2898.4978 80434.2637 5402.6852 20706.8327 20706.8327 3720.4805 4786.6538 5957.6111 4416.5542 2428.9137 3009.5538 5531.9084 9774.0354 5725.859 3528.035 3975.7905 3862.411 2814.9605 7046.287 344226566 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 8650.963 3307.591 3777.6559 2599.3731 5533.4002 10504.6585 4286.3461 7123.8457 1817.1819 3907.8207 304310070 alkb Organic Remediation Other Hydrocarbons NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 414639.9715 27360002 chitinase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 2186.9166 1678.3594 297159297 endoglucanase Carbon Cycling Carbon degradation Cellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 21661.7116 13594.996 2767.0257 4835.8004 2994.6479 4765.792 3886.5544 3886.5544 8645.8001 5920.5297 5482.308 3345.1072 4160.8097 4906.7258 13738.3056 5884.8398 13700.5974 2551.8407 5505.8927 4514.8887 4593.6163 292647425 gdh Nitrogen Ammonification NA Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 2271.7103 114227950 arylest Organic Remediation Aromatics Other aromatics Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 1827.0276 297548982 terc Metal Homeostasis Tellurium Detoxification Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 39194.8251 6739.804 66851.635 5014.325 7296.1396 3058.2827 6780.0144 4527.1259 30815.6027 4699.1712 8137.109 2262.2657 4825.1445 4718.7331 87281006 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1929.7361 3791.3775 5140.5504 5140.5504 4056.786 288574470 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 2497.4544 4651.9917 2141.3968 4199.2108 6615.0842 6933.4643 3925.398 2380.8996 365834519 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 2180.5645 2178.1381 57391.5518 5053.4682 9756.583 4461.1014 4461.1014 11348.3344 336010119 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 2598.0566 3686.8049 4469.4804 4237.4779 3244.8663 34499921 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3033.9344 6790.0449 6580.8063 8895.1727 6319.4322 2695.0571 68135537 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2194.4427 2455.6697 6870.7773 3389.4973 8974.5313 2587.4869 84778379 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1998.5235 2456.9201 3681.0491 3545.9083 8209.0867 52969.4952 4946.2304 6171.2652 4177.0173 9950.7092 6749.3685 9197.0972 8234.5849 4767.2531 1671.7654 2716.6302 6447.0732 194335650 ppx Phosphorus Polyphosphate degradation NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 3862.559 4587.7087 3779.1345 4533.2366 6512.0507 7539.1853 38677.1263 7528.8686 8661.8366 9851.2783 3007.517 95962.5878 8547.9026 4244.6854 6994.8449 3530.4463 3095.716 8459.9366 170605730 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1943.4892 3774.8238 9941.7844 4288.5303 5130.8982 4392.7696 5714.674 5730.1026 6500.9754 4986.2312 6502.9519 1872.9209 4371.4205 3422.472 2516.6555 7578.5606 29377069 trzn Organic Remediation Herbicides related compound NA Enterococcus faecalis V583 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 2164.125 3883.7234 307774973 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 2204.435 2575.5695 3791.0063 168269.4171 5150.5769 3673.8482 6820.0794 2443.3025 2443.3025 3047.0896 7257.6546 4949.6393 4142.1116 6173.1162 2262.4316 2663.1518 5969.0884 2451.8041 12262.2505 4091.0979 6239.8835 4369.5386 5632.8564 4208.1316 2649.6433 7807.3349 21672940 ppx Phosphorus Polyphosphate degradation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 1794.2252 4704.857 2821.9677 4759.581 3959.4967 2312.3458 7569.4397 8758.9847 5569.2478 2169.356 6554.8366 115890.6022 333479508 urec Nitrogen Ammonification NA Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 3352.5956 218243315 amyA Carbon Cycling Carbon degradation Starch Thermus aquaticus Y51MC23 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus aquaticus; 12631.8825 4242.8575 10325.5826 6186.8759 6252.5235 8054.6858 11961.7474 338822220 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 1830.0116 3188.2675 2767.2669 2579.0426 7060.8448 4098.7347 7614.6998 8475.3309 5309.173 4003.5418 9193.2767 6463.0408 2953.9504 2422.7423 6231.4327 8642.7742 5595.1609 5717.0146 2229.0561 7477.6315 3978.326 2956.5014 8757.4454 373868860 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurimonas sp. GD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas gotlandica; 2478.3798 1844.4073 4738.1878 319925448 RgaE Carbon Cycling Carbon degradation Pectin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 2884.7823 2720.3 6289.8777 5173.0835 2801.7809 3590.3479 11565.3382 4838.0384 9717.0087 2277.5155 38608.3271 3037.66 255280483 amyA Carbon Cycling Carbon degradation Starch Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 2540.2565 3282.5212 3662.0459 87819.6388 3879.6596 2934.3549 6798.4564 3661.8514 4565.9605 8734.6663 6182.8758 4983.7038 2626.0927 2826.9518 3719.6597 6867.9782 357213622 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 3580.7116 2284.2498 4034.8992 105539.8092 4372.375 4725.6624 1967.782 1967.782 7207.5646 6430.7361 5572.5119 5463.8695 8512.706 3000.6347 6632.6741 4493.881 1865.9463 2989.7773 2746.8217 7639.4284 373849326 nosz Nitrogen Denitrification NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 3367.7298 4254.812 4401.3972 4172.9698 2880.8952 117188421 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 2776.0609 4578.393 5669.622 3437.3363 8870.1744 4996.22 5451.5844 6674.0542 2791.3076 2809.4323 11006.0128 7027.3255 7418.0055 2944.8167 4619.4884 4483.7252 2466.2641 5885.2218 238717028 amyA Carbon Cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 2186.6371 4342.1622 14587420 chnb Organic Remediation Other Hydrocarbons NA Acinetobacter sp. NCIMB9871 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5777.6198 3191.4209 4045.7887 4341.5805 98356.5908 5317.295 3834.006 3934.2889 3934.2889 7578.1149 4951.4802 8281.7953 3611.7126 11723.2711 23464.0055 5947.9951 6989.582 4740.6588 9034.7003 2713.5334 224027977 aps_apra Sulfur adenylylsulfate reductase NA uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8777.9274 60417304 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4066.8013 8902.3011 5939.567 6070.8062 1744.6813 3134.1733 6095.9251 399030304 nbac Organic Remediation Aromatics Nitoaromatics Flavobacterium sp. CF136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium; 2309.5152 2089.762 3213.5658 3935.3571 4889.5984 9205.7653 5207.841 2136.891 1871.3798 7351.2406 2951.8773 4786.0646 21489737 tfth Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 2195.7979 4682.341 3573.9383 22504.3228 4949.2424 6359.3915 5390.3227 6231.3752 5094.197 9298.8374 6587.776 3305.4456 3897.4867 3871.7734 2485.0359 6141.3724 73762902 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2024.1656 6380.6935 3272.7678 3532.876 7661.6026 4924.9194 3630.0727 2263.4796 9151.9062 16070.9417 1937.4133 6699.853 2438.5127 228558172 amyA Carbon Cycling Carbon degradation Starch Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 2025.2435 4395.0902 4699.0394 6456.0715 3471.8727 6985.8441 3637.8867 4292.1458 6325.7175 2515.4133 3202.2842 224472730 phenol_oxidase Carbon Cycling Carbon degradation Lignin Laccaria bicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria; 3433.4373 321161499 cysJ Sulfur Reduction NA Acidobacterium sp. MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium; 3106.5314 4344.3628 4553.5977 6896.6342 6604.2925 6781.307 2343.833 4163.6629 49611589 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 2182.3738 334295338 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Erysipelothrix rhusiopathiae str. Fujisawa superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 5742.8108 3718.3335 3106.7861 262403177 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2431.3749 5799.7079 5337.5515 5855.2228 6117.5489 238608959 phytase Phosphorus Phytic acid hydrolysis NA Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 3386.9859 2287.0959 3880.2667 302680943 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3303.4618 88912859 xyla Carbon Cycling Carbon degradation Hemicellulose Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 4589.1279 7765.4719 8945.6697 5819.7466 237717952 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. 2_2_4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 60869.851 299774124 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 23893.8559 148474672 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2033.1369 3669.0525 55619.7117 7984.9782 5197.9259 5197.9259 200684.3636 4624.7037 7036.7229 1624.7572 3179.4037 3612.9312 3695.0165 359761310 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 1847.9719 12168.8005 5663.8399 4066.0495 130573.3615 4755.4197 3685.8222 2422.8902 5241.6488 2450.9971 9438.3029 3609.5183 5272.9149 1950.1933 3203.0389 12667638 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr624-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 12659.3265 3600.8799 14245.9874 5466.8311 5211.1481 5211.1481 5598.556 7502.1234 2471.8712 8514.6007 2407.1855 2741.9614 3793.6987 2249.8232 126459244 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 5626.9624 23184.6347 4270.0966 18411.9171 6755.1829 55161.8449 3308.6662 82409633 ppx Phosphorus Polyphosphate degradation NA Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 2576.8747 2359.4642 14975.2367 7025.0376 5265.9342 77620.548 8278.6337 5548.4142 7696.0042 4139.5923 4991.8822 4569.64 7296.9063 2824.7752 11517.1208 5167.4807 7763.0986 1847.5729 14712.7163 5139.5618 64687.7177 5745.6456 297142903 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 2500.3492 4785.2668 13105.3279 40079.6123 8402.7414 229829682 bco Organic Remediation Aromatics Aromatic carboxylic acid Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 3042.6598 4025.4976 3348.5938 23866.9512 2268.2772 6459.1853 3691.4004 305856792 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4468.2697 3549.9387 4322.1989 2729.7961 6248.1689 6326.712 6973.6259 3075.4623 3075.4623 3746.6152 5898.9035 2375.6617 2087.8216 4814.0853 2911.9884 119500518 p450aro Organic Remediation Aromatics polycyclic aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 2526.9963 2962.0282 3009.0945 4233.0069 82116.8267 4864.812 3760.1171 19926.9758 19926.9758 6098.7815 5120.4893 5716.1142 7689.5421 7944.7819 2247.9069 5756.006 23296.5942 10708.9277 5442.6462 5409.8754 4689.4336 2516.8635 3088.3014 2917.7941 9039.8003 114771030 TIM Carbon Cycling Carbon fixation Calvin cycle alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 2112.078 3930.6579 7241.0594 376168365 amyA Carbon Cycling Carbon degradation Starch Lactobacillus gastricus PS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 1907.3375 4581.7338 3623.9937 60416.9797 6686.7522 3061.2858 3773.6455 5161.1495 10578.472 5642.1554 13687.4496 2832.9821 24460.4577 57295.7661 357547430 badh Organic Remediation Aromatics Other aromatics Lactobacillus rhamnosus ATCC 21052 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 5025.5106 3078.8945 7888.5263 4776.9168 5711.3719 42317.4069 2247.4676 10070.5578 5509.6566 3302.6019 3619.2996 2175.0174 306487857 nirs Nitrogen Denitrification NA uncultured organism 2265.2079 8929.0279 6094.8027 2783.8801 78226.7717 5557.2562 5998.154 10906.3197 4209.9851 8035.2181 4423.1757 5586.1398 4991.3322 2729.2171 6261.4275 6464.4171 5900.9231 4113.0004 2711.0888 3800.9813 3237.6506 7595.6659 99030543 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 1734.4321 3364.4062 253987574 pula Carbon Cycling Carbon degradation Starch Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus asymbiotica; 3792.7705 28876.42 52549383 dsra Sulfur sulfite reduction NA uncultured archaeon GZfos27A8 superkingdom:Archaea; 2621.8964 32107.794 9109.0014 8519.4166 5175.5742 26187.423 141364.5244 2969.2074 9038.4485 342861873 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 17034.0133 27835.7724 7187.3488 7903.7862 8373.6522 37876.3008 3689.3678 3696.5597 15597.0487 2644.5625 4425.2947 8905.4063 3773.3217 3828.7146 2086.0903 12657478 nifh Nitrogen Nitrogen fixation NA Paenibacillus durus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2623.2776 6708.3163 3761.6725 332351900 mer Metal Homeostasis Mercury Detoxification Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 4154.5032 3424.5689 17346.5898 10492.1577 220729047 rgl Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 2667.2499 2969.9194 158424.4967 4087.6115 12113.9637 6235.8035 3247.3295 4693.5715 5480.0754 3254.8782 299133408 Sir Sulfur sulfite reduction NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 3241.9977 3489.3518 196777.5469 21836.9881 6243.6988 8150.5302 2776.2989 2776.2989 2619.8817 5481.0356 3561.5348 4000.7291 13205.0952 13189.5554 3729.0486 4772.2442 3106.8722 2894.5908 3444.4555 3084.976 7226.5627 422314449 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2706.5813 2534.6785 3546.9669 3760.8042 7179.656 6128.2801 4860.4259 6590.1351 3789.2727 3051.8973 8028.2944 5112.3477 5365.4135 3667.9595 3223.0088 3784.0606 3329.4145 4906.7582 402261801 tfda Organic Remediation Aromatics Chlorinated aromatics Sphingomonas sp. LH128 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4043.0881 35797.2187 3748.7562 578782.5865 5305.4175 7906.295 3075.8287 304391239 ppx Phosphorus Polyphosphate degradation NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 2273.6547 24567.5725 4627.9103 4586.4532 5213.033 6172.9683 8216.2261 3675.137 5078.8843 2454.328 2809.1971 5410.2476 66801899 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 7410.1503 5093.4775 2209.7711 4615.6276 5049.8766 7846.4457 65837.476 6793.4087 5705.5362 9369.3011 2968.4384 2968.4384 4066.3457 9524.9194 7858.8769 6632.8753 7804.5832 36431.967 45773.9047 7559.8042 12008.6778 11610.3409 17037.3807 10204.5361 8888.4342 3954.9377 4002.7101 6101.0578 3879.8396 9758.0497 247543438 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4601.5036 4642.8004 2521.7113 5393.9697 3246.1108 5275.6212 2476.454 5005.0645 8353.0494 4618.7519 2661.8982 227069619 nira Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 6080.1092 3471.301 5596.0222 1966.5261 1966.5261 9278.7031 20345.2514 357019621 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 2793.6732 4360.6845 98965.65 4522.8053 4367.1619 3070.7785 2173.1276 1842.8969 6693.701 116194216 cellobiase Carbon Cycling Carbon degradation Cellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5800.031 2126.1884 2917.2439 3732.976 6945.8197 6945.8197 8659.8382 4737.7526 4494.053 2234.8079 5962.8429 5379.0265 3481.2662 3906.1133 260423538 linc Organic Remediation Pesticides related compound NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 1975.578 3758.1464 2759.7718 20200.8983 6679.9035 2580.3544 2580.3544 4545.0917 5404.1772 33135.2577 8263.0524 3054.8085 121417.8692 3659.3025 9524.5062 8014.3057 2035.0196 3621.5116 33296.7962 296426555 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 1686.5599 333794354 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 3196.0592 3627.8248 3205.5578 8367.0499 5548.2999 2511.4321 2802.8953 5054.3938 30269553 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2713.0138 3325.726 17249.0037 3440.9884 3440.9884 4150.3903 2045.5486 2514.1573 13357.4837 4541.1571 325497082 gdh Nitrogen Ammonification NA Escherichia fergusonii ECD227 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 2415.092 3315.9278 1770.3177 58801243 urec Nitrogen Ammonification NA Campylobacter lari superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter; 3957.6993 2781.7789 3437.7954 4018.9066 68268.8976 6442.388 6194.082 2014.3386 2014.3386 4133.2096 8373.3199 5245.3141 4628.2614 9319.2007 5774.3926 3208.2724 3286.4328 5902.7642 4420.4173 11186.5343 3781.386 7814.4698 3516.8804 4183.3328 4475.4946 8096.1621 336300048 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8028.6024 3279.4542 3279.4542 5700.5855 229469654 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 2036.4507 65349.4775 22464.9493 7685.909 122090.8233 21326.2467 18523.6188 24249.3291 7314.5153 7314.5153 6340.7289 17890.5752 4998.7858 6334.5434 17249.8598 5200.5521 17096.6388 10996.5833 6512.5236 10379.0286 7601.7581 7339.9795 9667.1845 16695.1991 2385.8649 5529.5487 162707992 catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4761.5084 2931.6305 2000.8839 2000.8839 6328.0047 4051.692 186465481 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6039.0585 3644.1176 4972.3281 5699.779 4552.8643 5836.9639 5130.3279 6636.3924 6213.5454 3415.548 3336.2437 9167.404 10718.6502 5406.0122 7791.3336 3157.8116 3313.0377 4079.3092 3916.1023 27779.1137 154158832 mer Metal Homeostasis Mercury Detoxification Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 3745.0905 3535.034 11312.9085 56833.0585 3083.3816 3083.3816 2710.7086 2320.1912 9336.7323 3264.4255 302036204 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 5065.6375 3483.2131 7615.2874 69474.9279 4224.2087 6822.8559 6100.5178 9210.6911 3423.7715 10400.5216 5171.8196 3409.5027 2718.6931 6168.4118 2677.3503 15212230 ara Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 17485.2035 5110.766 3775.3772 5270.9235 2051.7594 2051.7594 8903.7083 6379.4677 3942.9212 2631.5041 38813.9764 5506.9006 7369.4555 3668.5279 3462.8503 3723.4462 3379.6136 5223.3348 154487452 pula Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 5279.1133 7867.1812 5178.587 5223.3273 9930.1708 5456.6479 2783.8143 2838.074 6099.8793 269829143 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 83084.9626 2141.9495 2141.9495 2498.3739 149927539 TIM Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 5190.2609 5058.2521 4410.115 2757.4429 120165.7343 3637.2967 8030.9006 4728.2679 5652.1005 12992.8471 2776.0882 2857.986 9365.4722 7316.0829 2896.0415 7877.9373 373235022 xylanase Carbon Cycling Carbon degradation Hemicellulose Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 2090.2768 2964.3305 2925.3554 2995.391 5281.2633 93679.9055 4356.6064 9118.9466 5826.1452 6192.0437 7066.4215 2137.5604 8497.2177 4354.9047 5523.8462 2423.5673 4031.5003 3524.0721 304371979 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Peptoniphilus duerdenii ATCC BAA-1640 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus duerdenii; 1995.1732 2951.8761 3529.1724 6151.5167 5455.0561 2316.453 6254.0703 2166.7283 5143.5716 2021.1605 146188554 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3227.6994 2731.8434 3339.4204 3211.0172 97866.7408 4114.0369 3177.5071 8722.8451 4457.9208 4931.173 6173.9903 6357.152 2098.0992 2245.1846 7327.8084 2345.2896 11409.8031 5490.37 2206.2467 2736.8283 3240.7162 1956.2877 4897.4003 386285565 sqr Sulfur Sulfide Oxidation NA Sulfurovum sp. AR superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 2072.9351 219675778 linc Organic Remediation Pesticides related compound NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3729.2586 2146.4061 5263.2903 26029.438 4807.0595 3110.8007 8444.4533 157804798 aps_apra Sulfur adenylylsulfate reductase NA sulfur-oxidizing bacterium str. manganese crust superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5298.8494 4103.0325 1976.4112 2458.848 2458.848 2728.0262 5141.8565 3079.7954 5051.8316 11652.6393 3487.0068 7116.9671 1775.0331 2535.1067 6085.8036 2672.8014 5245.9417 260614644 amyA Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 4853.5454 2390.3075 6842.0533 6882.506 8243.0077 5868.7328 25865.1945 2622.0812 3132.1509 2842.1402 13902.1683 6373.5439 2818.513 3799.3833 3407.7376 4811.8923 88778747 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 7626.7443 2302.7101 118327.8897 7837.2854 8413.88 10878.1903 2245.3348 224027844 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5310.6086 2930.931 56678269 dmdA Sulfur DMSP degradation NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 3035.0615 3538.7146 4365.9061 62951.0856 3499.9665 4470.4679 8946.7496 4302.0409 291582016 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 2448.9308 219965733 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2039.8767 2415.1116 4863.9547 57308.7833 2704.1679 6244.72 4228.0838 7858.631 2502.1015 5978.0227 12026.0056 3901.8035 5398.9248 2155.8435 2936.7863 3268.1506 4689.6936 46307898 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2995.9078 9283.2001 2406.9841 3759.1693 8891.0872 4119.0042 2711.6786 3943.5105 2667.5938 3044.9214 63081962 nosz Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 2826.3313 3986.3964 3834.1232 80258.7787 3974.942 19701.8958 5528.9736 5528.9736 2920.1185 6632.7815 3707.5815 6718.8189 5757.9365 2284.0214 3674.7967 1941.6726 9431.8535 7721.4478 6711.8016 2213.5407 4291.2803 5990.84 5912.0894 37547930 pcpe Organic Remediation Herbicides related compound NA Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 9745.2434 2541.5791 3174.9497 8471.7631 87827.7187 5818.9437 2281.6005 2281.6005 2914.1865 7364.5274 6030.6839 4755.6072 6552.8711 5720.5774 2685.0917 3658.7075 2188.208 13591.6202 6904.8919 5854.6428 3532.2001 3718.2034 4029.0022 2659.7035 11708.8565 336395349 amyA Carbon Cycling Carbon degradation Starch Lactobacillus farciminis KCTC 3681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus farciminis; 18820.8871 29350065 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 3714.9764 5691.2541 2270.0799 2270.0799 4677.3919 3413.4223 2570.6965 219964511 xylanase Carbon Cycling Carbon degradation Hemicellulose Neocallimastix patriciarum superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Neocallimastix; 4366.0907 326545225 vana Carbon Cycling Carbon degradation Vanillin/Lignin Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 5171.6642 2410.0269 2922.2425 8405.5862 128201.6444 3806.6109 5908.9885 4431.853 3785.2624 3404.3516 5618.8305 5879.1139 10705.6301 5419.7756 2672.7384 3164.2711 3265.9612 2451.247 7125.4045 257801155 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 2335.186 4192.9488 3794.2776 4916.5872 3177.4355 270511987 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 6254.4338 3166.3186 2624.3944 2624.3944 30364.0705 3955.6604 54007.681 2343.2221 8112.8532 3959.0349 16634.6108 2624.5357 4774.4036 379047485 sqr Sulfur Sulfide Oxidation NA Thiotaurens thiomutagens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Thiotaurens; 18126.1188 6866.9788 226092339 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 16047.1338 6315.2984 3492.9054 76214.0237 3483.0061 4351.9225 3074.7852 3074.7852 2860.913 6694.3621 5612.7746 9520.7756 3470.8528 2520.7262 4795.7002 3974.1983 7031.7069 6258.771 3345.4013 3480.5951 3808.7211 2708.5909 377808061 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2011.2176 4263.2548 4803.2711 3928.3965 2087.0767 7683.2639 3911.5798 1975.611 3620.6275 28400.327 325106461 xylanase Carbon Cycling Carbon degradation Hemicellulose Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 2403.4777 371950160 amyA Carbon Cycling Carbon degradation Starch Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 2007.2937 4203.0505 240948642 arsc Metal Homeostasis Arsenic Detoxification Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 8237.9159 374922805 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3603.4334 3009.2431 64197.6264 3427.1384 4624.8707 3679.8947 2969.1905 4743.9282 373908214 arsc Metal Homeostasis Arsenic Detoxification Methanoplanus limicola DSM 2279 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus limicola; 2672.4152 4098.9744 62481.4658 5423.1274 4088.6057 3033.7954 8540.6107 5662.349 5216.3469 4889.3426 3871.8733 2902.2059 7908.0258 5111.8133 5071.1094 3564.6152 4067.2792 5782.4319 119475890 arylest Organic Remediation Aromatics Other aromatics marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4857.5071 2913.4731 5395.7367 2964.5797 6005.5577 4921.8604 2852.1663 2734.5326 6687.6813 380695494 amyA Carbon Cycling Carbon degradation Starch Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 1974.9403 2314.5217 3157.7576 2894.5398 5377.0047 3991.8764 1760.431 2777.3616 3408.1267 115398107 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3208.1248 4588.45 5164.8887 5164.8887 2961.0214 193089854 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 6350.2076 9433.1385 6003.504 1868.5362 118470674 linc Organic Remediation Pesticides related compound NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4053.0112 4252.8085 4730.6046 4615.3832 7170.4797 6042.6291 10478.4122 5230.6711 51639.7252 51639.7252 29902.2792 5818.0924 66868.3735 4539.7916 6542.3263 8696.3061 8030.088 8930.9826 8868.7645 23895.3387 3115.5571 9861.3484 18054.6056 6627.3652 103293.6333 353201272 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 8238.2163 4324.221 4532.3291 3392.002 3718.5869 3485.5821 7519.5517 4019.2885 5089.7208 5011.6083 2564.7095 3622.5419 6825.0459 3684.3018 11133.1503 2332.4288 3551.955 3534.7338 3868.1588 4473.999 302414876 endochitinase Carbon Cycling Carbon degradation Chitin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 2034.7047 323489050 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Planococcus donghaensis MPA1U2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Planococcus;species:Planococcus donghaensis; 4872.8015 262370446 nfsb_2 Organic Remediation Aromatics Nitoaromatics Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 2203.7087 269960782 alginase Carbon Cycling Carbon degradation Alginate Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 5846.8396 190698812 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 2955.4671 350568528 ara Carbon Cycling Carbon degradation Hemicellulose Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 4558.9157 107583.6192 3820.1841 106774701 nifh Nitrogen Nitrogen fixation NA Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 3012.444 64698.2199 9876.8155 6183.1502 5313.8616 5251.3197 2887.5247 3012.8542 3356.2298 4529.9923 70730202 cysI Sulfur Other NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 1877.0867 5331.3191 6421.2475 223985544 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 2050.2596 2620.7119 4321.4464 7838.9951 232396.4488 4927.4661 9306.9606 5199.9478 5361.3552 3782.8875 19237.9644 8359.5448 6351.6312 3536.3822 4291.6714 255031890 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2539.7309 2618.031 122629.0013 4528.9064 4163.7599 3858.6297 2419.7395 2419.7395 3071.8047 5561.5938 4159.7569 10214.6148 10938.8866 7517.8052 3151.7478 3383.8054 6142.3616 2381.2414 8891.6806 6091.02 2413.7238 3024.7724 3191.0432 1939.368 5227.6673 384067808 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 20910.7753 3878.2369 2100.5055 74738.0652 31978.0272 2361.9595 2361.9595 6695.102 20839.839 7028.0461 10759.4041 16371.9784 4400.445 3208.7146 4974.6811 3953.3292 84388052 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 2087.5357 3328.2376 55934.3881 9691.3289 6241.4044 3208.2329 4233.7996 6351.4458 2079.1015 1886.4631 2490.3575 2842.6124 77995432 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 2299.3333 2332.025 2484.255 2484.255 21494.5593 4834.6735 4575.0883 3448.8938 6052.5607 2454.5825 2409.3048 4555.7962 63090.961 254490999 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 7059.8422 7381.2473 6765.0582 223451999 alginase Carbon Cycling Carbon degradation Alginate Pseudoalteromonas sp. CY24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 3045.1078 4068.625 6053.7184 4353.8134 5385.8 3346.0742 35292.6399 6096.0816 3442.4549 4883.2559 3420.8228 6711.3588 3270.0006 5989.0156 62003543 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2992.3606 5420.4231 7617.6993 3639.3137 56679672 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 3330.91 3178.5747 5580.5899 359927.5839 4649.7555 9505.2513 13821.9995 13821.9995 6455.57 8918.3298 1365352.0088 4388.7625 4024.3817 2583.3973 3125.9665 4863.7786 2784.223 2883.0397 5995.1576 35214984 terc Metal Homeostasis Tellurium Detoxification Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 1751.1084 3583.4093 3285.4768 3943.9022 3535.8406 7320.2322 2502.3776 2660.5191 2338.5851 4447.4078 134099922 vgb Virulence Antibiotic resistance Degradation Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 2179.7276 2235.9732 14163.377 3761.61 5746.5901 5061.9227 3071.8814 5376.3457 10046.5614 3046.4133 2953.0419 5317.8715 344201877 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 3665.7701 41058921 chnc Organic Remediation Other Hydrocarbons NA Brachymonas petroleovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Brachymonas; 3967.6143 5334.4778 3626.334 15727.2842 77974412 arsc Metal Homeostasis Arsenic Detoxification Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 3063.0565 3431.0175 5426.8326 13183.2757 13183.2757 8175.38 4256.3738 2090.4111 5288.64 4260.5948 5181.9117 2499.7566 2518.9087 2672.0883 158319459 chitinase Carbon Cycling Carbon degradation Chitin Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 1706.6962 2101.5304 10900.2393 2384.6731 3277.4219 4105522 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 2146.1669 2593.1241 3995.266 4209.6571 7296.179 198283921 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 8538.019 3687.9071 7160915 nirk Nitrogen Denitrification NA uncultured bacterium wB75 superkingdom:Bacteria; 2165.9351 3213.8484 2491.7294 74469.9065 3535.467 5013.1305 3760.6721 13448.0461 261857158 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8261.6616 3742.6387 2863.4234 4614.44 10816.7762 114096.8943 4737.3265 3624.991 38823.8562 38823.8562 3607.7625 7953.9563 5341.8934 4351.8278 5698.6066 6809.2768 2727.6989 3586.0479 6981.5202 3231.7774 14585.15 7607.5392 7245.5318 4326.432 5328.7923 7314.6374 4319.8677 6023.4414 319413993 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 43814.3664 2636.5259 2913.7528 206677299 SoxB Sulfur Sulfur Oxidation NA Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 2081.7591 2606.0193 3737.8885 3737.8885 5544.3738 3278.5417 13748.1583 12807.7353 2137.7098 8160.3097 2063.0022 4122.6257 2035.5538 160420052 amyA Carbon Cycling Carbon degradation Starch Bacillus halodurans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3097.4025 3922.1651 4269.6716 4654.2284 77703.4167 12520.9998 5676.4786 6379.3001 6179.0251 6105.6366 5122.4267 4684.0232 2714.4724 3197.5997 3169.5301 10265.1629 5052.8754 6790.0109 4049.896 4462.8907 5737.7017 378763708 phn Organic Remediation Herbicides related compound NA Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 2577.5368 4263.7985 4145.9949 4054.6381 2658.2651 4160.9341 4356.0332 4472.8869 2638.2796 4183.0599 5185.7085 2143.6297 3552.1335 3496.6264 2894.1484 11125.1993 77378533 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3669.3572 3220.7165 3289.042 3289.042 7189.2463 3025.5756 3358.2167 4281.6396 3682.2658 5203.5233 154151797 tehb Metal Homeostasis Tellurium Detoxification Candidatus Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 4903.2708 2748.4201 4290.1187 2535.7685 81866.9279 4347.2704 4347.2704 7545.117 3212.9966 2257.3804 6758.7321 2423.9605 3008.3063 3147.1593 2225.0366 237785162 ppx Phosphorus Polyphosphate degradation NA Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 3628.9891 3715.2333 6795.2574 3370.0869 101189.6471 5861.7288 5997.8238 2172.5923 2172.5923 13995.9698 9411.8425 5802.885 7787.4616 7331.5583 5310.2635 6062.6097 4091.1031 6743.5698 6558.6508 14300.3324 7157.6509 12140.6382 4086.5713 6315.7944 5875.1547 2847.5419 7502.2635 24421329 nirs Nitrogen Denitrification NA uncultured organism 4817.4832 3870.3256 56848.1978 2577.4892 4158.6669 5752.4119 2278.936 3043.8365 325062241 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 2986.6355 2752.4381 4746.1991 2257.8934 108327.495 4917.537 4142.3707 3652.36 3652.36 4466.5113 9279.4702 6477.5344 5864.967 6549.9904 7226.9431 3152.4569 3466.1111 9041.2935 2448.595 13519.9402 6543.4438 7408.2151 3166.5368 4016.4236 3519.9365 2667.6054 7868.7674 339467730 rgl Carbon Cycling Carbon degradation Pectin Mycosphaerella graminicola IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 2338.7156 3308.1713 4509.8973 6306.7633 3606.7134 3606.7134 6808.5938 5553.7466 5068.7945 21025.3714 17991.9568 6039.6289 3340.1893 118571820 ppx Phosphorus Polyphosphate degradation NA Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 3456.2478 2830.3763 126451.3938 3374.0692 2622.1071 308737191 narg Nitrogen Denitrification NA uncultured prokaryote 2246.7055 3283.8399 3325.625 4566.8311 113590.7587 4433.6759 3802.8081 2269.6629 2269.6629 3171.9694 8632.3833 5064.1314 7669.5495 5449.6003 5174.5698 2475.3577 2384.4217 6094.0982 2767.9927 9730.4544 5785.658 3085.0039 4100.0775 4124.79 2324.281 4482.6073 139002684 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4373.379 4586.4769 7281.6116 3283.3231 4416.8179 242120854 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 2281.1057 398869560 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2627.7457 222544020 soxY Sulfur Sulfur Oxidation NA uncultured sulfur-oxidizing bacterium superkingdom:Bacteria; 2359.4773 2802.9232 2185.107 3110.1824 2034.8921 5096.4592 3672.0552 167759687 b_lactamase Virulence Antibiotic resistance Degradation Clostridium scindens ATCC 35704 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium scindens; 3265.0976 8920.2171 302036206 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 2586.6835 2422.7205 3775.972 21621.3911 111981.3879 4927.1583 4360.3161 2466.6505 2466.6505 21610.6765 6051.0509 4656.2689 4684.5311 4101.4009 3450.4514 5651.8319 3137.5384 111918700 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2287.7268 56861.0696 9694.6415 3721.8601 5820.1806 121495612 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11088.375 12881.0107 3714.4859 4044.9671 3750.28 63301.2141 7891.365 4517.6773 4517.6773 3106.3964 8212.4158 3576.0744 6389.5555 7403.9781 3465.2324 5431.473 2063.8588 9047.8265 4857.1218 5005.3799 1961.4744 5189.0902 3431.5568 10949.188 386745088 chitinase Carbon Cycling Carbon degradation Chitin Providencia stuartii MRSN 2154 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 1960.8658 3843.5959 17570.567 3152.3661 9948.1912 323313413 arsc Metal Homeostasis Arsenic Detoxification Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 10043.5991 3838.2467 3266.0227 7227.6488 4546.3181 4692.5497 6283.8379 3595.3724 383083209 amyA Carbon Cycling Carbon degradation Starch Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 23138.7329 2627.472 15947.9597 6179.7259 2610.7193 6649.7172 2211.5247 10690.6415 379990365 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2069.2087 2780.7081 1886.4738 3236.2778 2478.7009 3349.64 3163.0771 3163.0771 15274.7959 3698.3027 5623.8704 3871.0814 11302.0459 5223.1896 2463.3709 4527.4372 2824.7803 119481555 amyA Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 15488.5158 2863.9002 6373.5662 6373.5662 7720.0755 6240.9186 6895.4279 3899.5018 2664.1601 3280.8473 374814646 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 4337.4665 312443536 ppx Phosphorus Polyphosphate degradation NA Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 2832.9748 3363.2927 8060.2462 2405.7318 75803.5907 3940.7243 5065.3298 1895.7492 1895.7492 10644.3402 11395.0428 6659.3362 2451.0257 4036.2115 5954.8057 2409.1394 9582.0428 3520.9224 6177.9678 2474.9727 4686.9493 3211.8534 20932.319 58261698 phenol_oxidase Carbon Cycling Carbon degradation Lignin Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 8617.2397 3888.3489 308228154 TIM Carbon Cycling Carbon fixation Calvin cycle Oscillochloris trichoides DG6 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Oscillochloridaceae;genus:Oscillochloris;species:Oscillochloris trichoides; 3003.7388 207870.7948 3532.0921 4411.2676 11864.0885 162285256 B_lactamase_A Virulence Antibiotic resistance Degradation Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 1977.6776 4567.491 3546.2073 239626421 amyA Carbon Cycling Carbon degradation Starch Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 1671.5239 77378477 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3280.4626 393401798 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans 0102 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 3561.6599 5451.8215 5629.3396 2504.2788 115951.207 5062.2435 6982.559 6982.559 10100.4607 5481.7858 4156.4823 8789.1353 3296.8042 8991.8139 2441.0118 12406.5754 5657.3284 3468.1342 4274.7255 5062.6643 2953.5328 5013.6485 370793234 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria innocua ATCC 33091 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 3107.7946 4182.7196 12486.5202 2595.0248 3600.2667 398355263 catb Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium fredii USDA 257 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 8516.8475 954430.9661 221725632 pcpe Organic Remediation Herbicides related compound NA Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 15876.7275 3152.8809 3576.3811 4319.2702 6358.3109 4117.1521 2485.0208 7129.0585 2477.8075 8046.3 5634.1552 2058.9066 2918.3514 154089138 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 4152.9452 2992.4906 5157.7242 78441.6001 3927.875 2144.6303 2144.6303 3032.0122 14961.4489 3375.7519 304383812 cda Carbon Cycling Carbon degradation Starch Prevotella marshii DSM 16973 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella marshii; 2036.2519 3682.7474 3335.3738 4994.723 9845.4356 187725341 one_ring_12diox Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 3397.4084 4016.3926 2201.8067 1886.5348 4810.6002 3989.3701 126735630 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2571.7794 5566.8916 4134.2565 4861.3247 2926.7674 5212.7 4306.7084 4167.6286 1906.5612 5305.1231 2737.6007 1966.4553 5482.0305 46307976 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3385.7432 14263.217 5611.7558 2312.5287 2312.5287 3367.7988 5266.5545 3673.6249 3942.0823 5568.7951 5017.1256 4197.1414 119353328 dsrB Sulfur sulfite reduction NA Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 3351.6536 7434.4266 278811.8058 2220.6963 4907.0132 159180313 phn Organic Remediation Herbicides related compound NA alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 2133.531 4393.4521 8167.6562 71861.5762 13020.3862 4093.8092 4093.8092 6222.8973 6516.8571 1682.7342 211905919 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4667.3726 3533.2455 76226.1044 4724.6664 7072.269 4623.5519 6567.5777 126460037 APS_AprB Sulfur adenylylsulfate reductase NA Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 4271.0243 6366.0574 8272.7626 5721.6712 7496.5321 4755.1086 9497.8871 5534.147 5693.7588 5486.196 2826.8852 11768.3805 5909.4286 5412.1325 4245.1225 153832827 nirb Nitrogen Assimilatory N reduction NA Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 7464.6076 383294684 ppx Phosphorus Polyphosphate degradation NA Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 6856.9912 3582.4052 43805.3611 3431.7864 5886.2258 4289.8111 11388.8093 4586.6438 4586.6438 12136.3218 4799.5015 6866.528 5848.0307 4342.0037 3479.0197 6695.4263 1134605.1187 5545.0489 7623.4805 4928.9269 18956.5425 8051.6028 4616.67 5969.9237 78496778 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurimonas denitrificans DSM 1251 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas denitrificans; 2220.7414 89513036 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2346.8822 3793.6192 2030.4415 3777.3926 5614.7172 4040.6932 3714.3775 7545.8063 5925.4958 4196.4539 3812.4592 2734.048 7655.1285 2081.7306 4887.0425 6136.6874 2393.6178 3813.6331 2955.394 3562.4407 6691.1243 78515898 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2820.8421 7185.0852 2991.4722 4953.6442 3672.6276 3618.7925 3390.4859 2993.8119 73669221 arsm Metal Homeostasis Arsenic Detoxification Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 3870.8457 2642.4775 3046.2325 5670.666 83273.4296 3914.2173 5183.7273 2085.3524 2085.3524 5728.977 6117.268 4099.2918 4601.579 6815.5437 3444.1327 6843.2366 2905.7213 2794.5826 3061.4282 4652.4706 99083199 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2437.8304 3516.7961 3818.9314 4606.1557 7171.7929 8993.1768 5004.1661 5159.1783 339018108 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 3111.6817 6852.5609 5621.569 4249.2045 3325.7443 75358.1669 5335.3884 13821.2802 6342.7766 6342.7766 2905.2895 11931.0341 23798.29 21232.873 8098.1167 3306.9573 4612.8074 12477.2121 15578.3995 11550.507 26002.5272 3528.5028 7908.1353 3535.5625 2303.3745 157317242 rd Organic Remediation Chlorinated solvents NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 5165.9149 60861.1715 2831.3302 2831.3302 7244.4084 3843.4755 7814.3526 2890.4047 2543.6452 5668.2311 2572.5977 3413.0871 2789.9629 6993.4769 116610594 pcpe Organic Remediation Herbicides related compound NA Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2612.4818 6917.5992 312883897 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 2157.7546 3361.1255 4139.4632 158309086 FBPase Carbon Cycling Carbon fixation Calvin cycle Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 1967.451 11598.3221 6959.3018 330965831 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas syringae pv. actinidiae str. M302091 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 2688.8786 2841.4497 17037.9415 17037.9415 19996.2882 7441.759 324969498 ppx Phosphorus Polyphosphate degradation NA Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 2960.5429 9225.1654 3082.9851 64420.6521 4678.2046 7173.3915 4943.8095 6740.4591 4613.9084 4276.2838 5882.7454 2932.0284 5181.6194 1957.5049 2785.8484 3750.3229 2754.4309 110286928 tktA Carbon Cycling Carbon fixation Calvin cycle Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 7253.4084 16514.8716 6467.6747 3818131.3734 5294.4408 5249.4593 9956.5005 12631.4355 12631.4355 10365.4922 7482.5621 7557.8795 7173.4445 6412.2821 4337.5098 5306.6145 8910.6493 6554.8198 10420.4653 6673.9624 4988.4962 5160.9374 5587.2321 8922.6671 9219.1935 336398605 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 1965.5059 3483.4256 7410.4681 3319.4015 6023.9975 6823.8056 2446.304 385274953 vgb Virulence Antibiotic resistance Degradation Pseudomonas sp. K-62 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1907.2876 1954.3386 4206.6627 1929.9284 1929.9284 1763.6822 377571629 arsc Metal Homeostasis Arsenic Detoxification Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 4567.9859 6047.351 87879.2808 5080.4783 5455.7613 15908.3706 11156.1944 11156.1944 5950.5483 3828.2196 4127.945 4980.1604 6556.0563 2233.986 8854.2609 5042.8578 6467.1347 3565.6164 3770.5712 2147.4153 4298.1714 333930808 amyA Carbon Cycling Carbon degradation Starch Serratia plymuthica AS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 3026.8938 5846.2426 3572.165 373945221 dsra Sulfur sulfite reduction NA Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 2425.0194 151302189 aps_apra Sulfur adenylylsulfate reductase NA Desulfothermus naphthae superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfothermus; 1804.3237 8332.442 9472.1557 3521.3952 82793.4979 5943.1711 4365.9761 9502.227 9502.227 2481.7812 6859.4126 4423.5313 7110.7224 5071.3034 2725.132 2275.9806 6651.5013 2239.0378 8541.2355 5303.9049 8038.0883 2939.4514 3193.3802 3799.4478 2559.2139 7211.2509 198251292 ppx Phosphorus Polyphosphate degradation NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 2048.3772 4242.927 6212.9283 3484.6194 7438.3352 6036.2595 4358.0001 5708.8914 2000.6239 2000.6239 3727.1341 10088.7258 6545.3486 3833.206 5548.4887 7200.814 3805.1059 3835.6878 10231.4799 4086.7823 13635.0374 5707.5043 7743.7189 3063.0257 5192.6261 6468.0642 2204.9261 5925.2965 383774473 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2638.8618 2453.0794 6352.1743 3694.0323 3632.4485 7991.3774 5469.5572 6178.5506 5236.0294 2495.294 7718.1251 6557.9445 3732.8169 4094.4695 45272465 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4484.3168 2912.6575 4958.0988 2537.0765 11098.0884 2906.4199 3013.5489 11355.346 5255.0145 5798.0023 6207.4156 3448.5809 3411.6252 6912.7933 3038.6662 11583.5441 5598.3877 7450.7635 2916.8956 4558.2221 3472.8248 5270.2785 295057767 pme Carbon Cycling Carbon degradation Pectin Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 4097.193 34751.7802 9449.4707 7163.2559 4988.4339 11405.1842 11405.1842 6548.1309 5792.835 4720.9474 5491.879 15254.4191 3291.7061 3128.922 6071.7578 212711351 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 5948.5795 7179.8412 5362.793 96593.2746 4542.3427 18870.0074 18870.0074 3652.1213 7737.4954 5382.1436 5752.5113 4205.0783 2572.4039 5817.1839 4437.3626 16516.4347 7432.1207 2535.8871 2731.439 4443.1026 4604.1306 6022.601 375143310 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 1923.6722 5443.8673 5443.8673 12709.0624 5066.6641 2469.2244 119862900 amyA Carbon Cycling Carbon degradation Starch Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 4472.5836 8752.6763 5298.5954 212546891 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 7499.3375 2389.2284 79191.996 3744.6905 4558.905 6753.0591 3654.9637 3982.6841 12373.7029 3733.702 2323.8441 1700.382 3568.0187 14798.2768 167668107 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 7775.2952 3712.8423 4042.012 2490.2449 3213.459 334135953 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2445.8358 4882.3736 4583.1165 6234.4908 11243.1691 5529.9293 3989.7397 4548.0804 40050.6962 8260.4655 13031.4367 5353.7663 3670.5871 4964.0374 20257.6571 8444.5928 9641.2234 3823.3989 21041.7394 4798.2491 197789453 ppk Phosphorus Polyphosphate synthesis NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 8980.2428 1834.0416 71735139 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 7211.7209 10222.3335 2933.4975 4212.1088 6548.2304 7232.236 55143.3575 15378.2966 3626.3302 8586.9006 13552.57 13552.57 3716.3338 7938.1216 7132.3911 5223.3382 18246.9015 21954.2555 3044.5184 9950.7024 5665.5401 5832.6707 41853.5418 8123.8175 12334.5502 4940.566 7896.7867 4920.1329 4147.209 169828489 arsc Metal Homeostasis Arsenic Detoxification Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 3696.6965 3122.1094 2907.9896 3468.9249 59822.5469 4857.906 10048.646 6465.5791 3919.9692 6758.4959 4412.133 6341.4583 5426.577 2513.0018 2933.8099 4160.3015 4923.2391 197790853 arsc Metal Homeostasis Arsenic Detoxification Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 3227.2897 3134.5996 4187.2728 6384.3479 2798.2991 115953.5655 7086.906 5892.9263 4586.7599 5065.3075 5065.3075 64015.5712 8876.8063 4567.4651 11002.5842 5903.3738 2758.8492 3244.6116 9117.9859 3578.8381 13812.9026 6697.8189 9008.5286 2140.9603 4466.1147 5422.6066 3369.6427 13709.2978 307588149 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4130.6522 11730.2139 94983097 silicon_transporter Metal Homeostasis Silicon Transport NA 563451.6388 374387881 urec Nitrogen Ammonification NA Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 2698.2954 2668.313 1903.2545 5359.605 95049.9314 4307.7254 3889.2137 4976.6304 2573.4536 2573.4536 2619.1951 6532.4165 6877.8246 4775.5291 4347.5206 8325.8208 3149.2647 4546.6762 5931.4624 1814.3187 3702.2576 3157.6247 2101.6707 119898764 mdld Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 3760.2525 2832.9992 6818.4016 5714.1459 7157.6826 7047.3268 407717156 cdo Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 2398.3674 2386.5771 1953.9403 3290.344 5914.336 72185.8999 4553.5673 8494.8688 5185.9231 6871.2677 4892.9819 3126.6602 8413.7114 6411.035 5277.7987 2696.3868 3636.942 3562.2317 4978.3225 349593605 rgl Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. subtilis RO-NN-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 3915.4084 6664.106 6664.106 2276.6569 312212973 cellobiase Carbon Cycling Carbon degradation Cellulose Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 11661.3327 18444.2198 2668.7853 4046.8281 4046.8281 3620.5082 5285.7109 3293.4631 229829664 amyA Carbon Cycling Carbon degradation Starch Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 2152.1102 4703.4422 323493554 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 3420.9724 6852.9788 4811.0861 10124.9903 25623.8881 3499.3407 399986921 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 19734.9283 3182.4613 4758.402 42311.2313 11605.3191 9695.1221 9695.1221 17016.3962 4693.5181 2492.0938 7416.1974 2812.1375 16090.1559 6746.4462 6720.3856 3031.5053 5930.8094 3332.1559 3205.5192 229610695 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4609.8015 22024.4835 22024.4835 5743.0897 7952.6341 10518.4258 2795.0453 145692872 linc Organic Remediation Pesticides related compound NA Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 14346.9926 4728.4654 4284.4145 4211.3796 4366.2972 4747.3375 6252.5135 8205.6876 3675.803 112462199 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6607.0436 7198.0098 3360.4072 3360.4072 32377.1388 4802.1023 295665133 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 5747.6196 2474.3926 3403.2114 4149.8347 66877.1606 4006.9258 3192.3509 5119.1592 4536.0719 2312.3899 5489.9509 2104.3258 8003.1907 5052.577 2235.7961 2845.7301 2059.8539 6766.0822 76057603 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3185.1408 3569.1474 2535.401 4324.6258 8050.5477 61085.7842 5446.4906 2478.9748 2478.9748 19132.9651 8796.7958 5049.7634 4518.9779 6893.4237 7073.323 2474.8866 7497.8983 3217.2578 8812.4132 5145.5349 6013.1085 4921.5239 4704.4857 5798.1153 4697.797 7425.394 343504580 amyA Carbon Cycling Carbon degradation Starch Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 12206.0461 1725.8422 2921.7987 83701116 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3323.7329 2832.3696 4154.9509 75345.1473 7470.672 4423.6409 4610.4397 3970.266 5517.4206 4475.6369 2382.6161 7360.1544 4089.5173 5603.3906 3505.6896 3215.6095 2735.5228 40783175 phospholipase_B_fungi virulence degradation NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 108249.8843 209542698 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 3418.2347 3923.5574 2169.6298 4815.1282 1680.0935 3766.9602 282951244 xyla Carbon Cycling Carbon degradation Hemicellulose Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 4168.569 291188.9462 26303.3056 4950.215 4950.215 5865.2644 4852.507 15679.1372 388246095 badh Organic Remediation Aromatics Other aromatics Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 2420.2845 22456.5239 6072.0752 29126.5612 5420.1689 5356.1358 7612.5456 3558.1357 2596.9889 71729244 atza Organic Remediation Herbicides related compound NA Xylella fastidiosa Ann-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 5270.7778 70764.9633 4255.7569 5384.3682 1957.5623 18770.5673 160917502 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3326.3135 2487.4205 4174.1826 8087.7883 8914.9685 4478.6127 8520.8472 4502.7865 2856.6488 2597.8154 1959.1185 9823.9046 5511.4579 6297.9454 2362.81 3623.0544 3440.9973 3286.731 4765.3265 365895061 aln Organic Remediation Others NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3231.4915 2455.6394 10771.1854 5566.3009 2802.2418 1292516.5025 24816.2343 2583.7778 2583.7778 7883.2669 7013.315 9023.9729 7237.0014 2758.3406 3440.4954 17797.9118 12054.5018 3859.9984 6677.858 3671.6266 7179.0343 5265.3371 2921.7322 5993.9567 153962712 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 3107.9161 7074.8416 4765.0236 11230.5361 5205.0455 3163.3169 213421.4404 9626.0681 6506.4299 6025.5018 6025.5018 3917.419 10172.352 6077.139 10030.7893 911904.0334 3278.0336 10764.4014 8879.7857 7142.9005 26333.8246 8686.1187 15235.0106 21277.0065 11451.9083 12365.5518 11865.0554 8354.4316 298384189 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 2278.3644 2903.6554 3335.3116 7200.0866 3593.2428 5848.6751 1783.3483 2594.1941 223714378 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4365.4439 2669.6611 4622.8265 6730.1117 4012.407 101457.138 2582.5961 2582.5961 7777.2826 5005.5937 6006.8788 10002.5724 3056.7937 2887.9447 7218.1875 2683.6165 14149.366 4650.4416 7728.1168 2745.592 4031.9818 4039.0447 11657.7849 6115.4092 375146915 RgaE Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 2900.6008 2928.0773 4792.6776 98324.7048 3570.4015 2859.6824 7415.537 4449.7737 4027.7844 4502.6103 11387.5143 2351.6013 6748.4212 2164.9777 8125.7315 3616.5238 6512.7322 1691.016 2831.0087 3812.5019 5007.0709 218440087 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2993.6999 6783.9659 330446230 nirb Nitrogen Assimilatory N reduction NA Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 6850.4906 10316.2169 4910.9716 9809.6035 3628.4727 8185.9632 24000.8751 29267.4459 4938.8585 4938.8585 3738.6086 88354.8601 54889.2306 7910.6357 3383.1779 4945.8609 36805.095 3954.0608 14639.5728 30372.9682 31687.2098 2990.1484 10780.0185 2718.8179 340349807 gdh Nitrogen Ammonification NA Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 2099.1436 2140.9378 3092.4953 331244.0324 5767.8467 83318826 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 82344.0654 26465.9043 9322.464 9322.464 6329.269 5002.0664 13061.4871 171852069 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium urealyticum DSM 7109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium urealyticum; 2572.3045 1954.864 2314.8468 4670.3003 2243.0837 64059.3187 3589.1398 6663.7504 1752.0185 1752.0185 2850.6085 2181.3966 2450.9348 7374.0241 5635.0592 2742.853 3497.4822 3764.8334 3489.3388 4998.2685 189433044 ppx Phosphorus Polyphosphate degradation NA Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 2819.1016 290559634 amyA Carbon Cycling Carbon degradation Starch Candidatus Parvarchaeum acidophilus ARMAN-5 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Parvarchaeum;species:Candidatus Parvarchaeum acidophilus; 3959.9205 2088.1975 4526.2236 6822.8345 151167.4897 5656.9687 2378.8799 2378.8799 3725.5055 7035.9941 5793.7812 6095.8496 5721.0299 6982.0841 3106.8326 9230.3482 2375.8528 10618.009 5210.537 6485.2009 2092.3134 3310.065 3865.5614 2329.6309 10358.7778 103487310 arsc Metal Homeostasis Arsenic Detoxification Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 2670.4804 11218.8756 3990.3468 11428.2395 63623.0467 4256.3229 3077.1452 3077.1452 7975.1333 4871.4843 7468.8462 5462.3438 3571.9269 2560.8955 4213.3966 4195.7293 4547.5944 2832.102 2119.7656 6085.9908 306517668 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2196.6388 30695.9316 4794.1949 6279.4757 6279.4757 228756395 nbac Organic Remediation Aromatics Nitoaromatics Bacillus mycoides Rock1-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mycoides; 2188.864 3575.0183 12075.722 2342.8983 3853.6248 1762.0656 6294.5573 167362109 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 10661.2488 2913.5272 2427.7127 6818.0031 6456.6692 3917.0898 127882.6771 8035.874 5090.2793 6715.6014 3784.0706 3784.0706 5123.2865 24989.0755 12931.4156 6556.6342 24659.6964 3119.8901 5954.3043 22130.0758 9164.2274 45088.2114 8155.5577 16177.6722 5247.9577 8672.3124 14413.8584 4295.2138 281355359 ppx Phosphorus Polyphosphate degradation NA Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 3926.3803 2666.428 2202.7386 64646.8943 3975.326 3562.1157 2907.8898 7682.7434 4157.122 4934.217 4292.3109 2462.7548 5875.4202 2314.0682 6483.3276 2385.8292 2628.1891 4374.678 1944.1935 6575.5244 326412275 tktA Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 2031.3368 5042.9329 4820.3507 5954.6023 6343.1486 14267.3991 7672.063 4705.4194 12896.1439 2930.4611 2930.4611 3028.7751 5653.9115 3461.7961 10332.2475 3587.546 8094.3946 11042.9405 3323.4616 5884.2038 5813.1214 4674.8938 357538235 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus R0011 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 4316.3124 86190.142 3584.3636 5207.0616 5686.4948 5222.7238 338234138 poba Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 5224.7814 309369039 chitinase Carbon Cycling Carbon degradation Chitin Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 2323.0023 3915.6828 6295.074 3069.949 6666.4202 2396.7436 77880.2288 4088.8474 4291.0953 6246.2619 11520.1155 4624.4694 8634.0703 4842.4044 2571.4579 2191.6201 6014.7601 2292.2077 10589.2226 1773.9152 3967.143 3557.8871 3163.7758 4560.5824 402568162 alkk Organic Remediation Others NA Burkholderia cepacia GG4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia cepacia; 4655.8739 5914.9596 2663.1704 76318.3018 3425.9703 2849.3267 2849.3267 4817.7173 6951.6328 5176.7352 10441.382 2398.9152 2765.7711 2277.8782 9949.224 6560.7772 2276.3988 3537.6852 3080.7304 339615424 mer Metal Homeostasis Mercury Detoxification Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 2873.2686 3966.7213 5867.0828 146230647 arra Metal Homeostasis Arsenic Detoxification Bacillus arseniciselenatis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anaerobacillus; 6336.5396 3549.5416 6256.6927 280604.3117 6627.609 4615.4888 4917.792 11463.9064 11463.9064 6892.9656 6425.6703 4535.4418 6576.218 5873.2699 2088.7138 3576.2467 3749.2746 2991.5257 88812484 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 11392.975 3746.4212 4851.6356 4529.5243 1925.2041 1925.2041 4435.1456 2374.2847 7267.1222 8580.8504 7893.4888 2166.1468 311030589 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2244.4034 2487.328 3481.1359 94037.2552 4551.5313 8126.317 4826.2884 4487.3444 6242.4087 4124.6246 6124.5161 8993.8507 3826.8107 6840.5884 2913.2432 5143.4473 3372.0141 1995.3682 6331.0108 254487817 SoxB Sulfur Sulfur Oxidation NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2226.6865 2448.1889 334145627 vana Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 6249.2623 13398.4312 68579.4626 2922103.1137 6490.8541 3953.2847 2612.3364 14637.888 12080.1652 3951.8087 15352.7636 3104.2475 3528.7228 3718.1245 150955273 one_ring_12diox Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 4449.2052 2398.9527 2726.4636 298274296 nrfa Nitrogen Dissimilatory N reduction NA Bacteroidetes oral taxon 274 str. F0058 superkingdom:Bacteria;phylum:Bacteroidetes;species:Bacteroidetes oral taxon 274; 3088.6395 2194.7459 8028.6449 4460.3746 4436.0447 4825.5258 10593.3986 3973.2862 2806.7462 6943.2951 8011.6419 5148.9863 5432.2514 3402.4689 4250.3032 3474.8168 375109857 pula Carbon Cycling Carbon degradation Starch Alishewanella jeotgali KCTC 22429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella jeotgali; 4883.6079 3530.1603 2423.6829 2423.6829 3212.2258 6018.4221 8181.8019 3759.1403 4674.9727 2028.9604 9238.562 4723.7411 10261.5925 11177034 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alteromonas sp. O-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 2631.8671 3317.6248 3186.6118 5020.2585 4521.9057 3199.6055 92870.3839 4801.5478 4202.1893 2078.5555 2078.5555 2670.2862 4974.185 4581.5997 4380.2619 2625.2833 3011.9534 7780.6543 5029.4356 2424.7617 3779.9093 3140.7115 316913915 tehb Metal Homeostasis Tellurium Detoxification Gemella morbillorum M424 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Gemella;species:Gemella morbillorum; 3200.2728 90821462 amyA Carbon Cycling Carbon degradation Starch Lactobacillus salivarius UCC118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 3756.2055 2210.7391 4600.5808 4398.2078 123655.9094 4012.9541 2505.9286 2505.9286 3400.7224 8438.4589 4433.1471 4609.327 4866.6722 5996.6032 2637.504 2699.9277 2155.0508 8821.3007 5739.6727 3075.587 3629.544 3206.5585 4714.3843 372275507 cysJ Sulfur Reduction NA Pantoea sp. SL1_M5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4057.212 4150.0147 284448105 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 3405.7029 4913.2192 388567734 SoxB Sulfur Sulfur Oxidation NA Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 4280.0046 2056.3515 2380.2982 3733.188 2528.5284 104991.523 3746.069 3573.5204 7777.8884 4940.4982 15552.7329 6537.7604 2422.9101 3786.0352 5961.6292 2337.9187 13014.3413 6802.1407 6357.0605 1927.8316 3457.3273 7607.2806 27355843 dehh109 Organic Remediation Chlorinated solvents NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 1966.9084 2629.2343 2869.0176 75631.0049 11288.2547 9681.8842 2477.6253 4628.0485 8661.23 6159.4312 2018.396 6119.3408 123964955 urec Nitrogen Ammonification NA Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 7924.949 2451.9553 4228.3682 4277.8792 6608.2959 51571.668 4225.5215 38618.8317 12604.0694 3690.8939 7242.2958 4493.4785 2193.973 7794.4706 4496.8371 5012.9681 2535.0727 14055.2283 14945.4394 6568.7356 7343.6255 197362907 dmsa Organic Remediation Others NA Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 20686.2031 2107.4134 5459.195 4164.3779 11278.3541 7268.8506 8794.576 2236.3492 12686.8057 13560124 dsra Sulfur sulfite reduction NA Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 4535.2461 2381.2064 88097.1144 3652.7958 3001.7843 7006.7929 5046.4975 4354.6882 2299.5185 6277.9376 10195.0493 3731.2086 6502.2198 2299.3604 2980.9306 3581.9893 2558.617 5904.659 56379084 amyA Carbon Cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 4011.0393 9596.9899 61656.4613 4348.7712 4970.303 4970.303 6448.8069 5323.9237 14322.5442 6650.2537 5956.2838 4056.0099 4403.8959 70986930 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 2454.9083 3474.7406 2118.2753 2118.2753 7738.7715 5213.1956 3409.2207 2354.725 167076659 atzd Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 6475.8214 393249.6633 336428331 ara Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 6681.1658 47233.956 7719.5385 4523.0765 62573.9848 4795.156 3929.244 3929.244 7181.6243 8658.9646 7528.9891 7893.2358 7769.209 3960.3552 6854.7393 3211.6384 17604.0942 6392.4597 5761.2463 3014.3061 4019.1067 4137.5146 3698.2648 10511.044 255292849 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 2220.7671 147677923 amyA Carbon Cycling Carbon degradation Starch Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 18366.7959 2063.455 2063.455 3038.4068 323273828 amyA Carbon Cycling Carbon degradation Starch Microbacterium testaceum StLB037 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium testaceum; 8698.8582 359409511 FBPase Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 12769.2162 4441.6493 7929.9871 2748.383 6271.0479 6271.0479 6669.055 8443.3283 2087.8071 18690.8443 3202.4498 5601.7429 388008409 cmci Organic Remediation Aromatics Other aromatics Pseudomonas synxantha BG33R superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas synxantha; 3532.8517 3324.7851 3386.5703 291543735 amyA Carbon Cycling Carbon degradation Starch Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 3794.845 76224.0867 5390.1538 24946.2573 8529.9458 8529.9458 260606013 amyA Carbon Cycling Carbon degradation Starch Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 3235.9319 3241.7239 4138.5312 6694.7737 2040.9548 2040.9548 2674.1048 6843.7196 4484.938 3831.3938 7524.864 2153.2665 2266.7941 5805.7889 9241.062 4929.9784 7602.8274 1685.689 2888.9433 3994.2458 2737.9635 13495.1622 93353672 FBPase Carbon Cycling Carbon fixation Calvin cycle Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 2501.4524 3342.2926 79891.9557 8510.6749 6011.5533 6258.8586 4713.0776 6686.1945 5163.5587 5188.4576 1858.4243 3560.7485 3495.9359 316948304 cysJ Sulfur Reduction NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4620.4085 4301.3973 3524.3865 3524.3865 20006.2245 6464.0307 2895.2499 2269.7778 6626.9596 3408.066 269979659 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 3966.521 2375.2901 3271.4609 4957.9376 8330.1648 85780.6095 6690.0362 7826.995 5546.7692 3995.2396 3369.9753 35993.0359 3926.1602 7069.858 4025.5599 3659.1216 3998.6424 208605074 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales; 2686.1804 5648.2933 103826.802 25125.0404 3096.8554 30089160 nirk Nitrogen Denitrification NA Haloferax denitrificans superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax; 6956.0819 3815.4508 9902.4366 404252957 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas sp. PAMC 26621 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2074.8447 57581.2128 4186.8985 5139.3382 2666.525 5542.6273 8451.2892 4778.5762 5074.4914 3120.1387 2159.02 372557893 amyA Carbon Cycling Carbon degradation Starch Leuconostoc citreum LBAE C10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7307.3394 73762776 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4732.0908 3741.3414 899515.9057 4414.6961 5774.3306 77161.2493 9151.4593 4809.628 7740.8194 2834.7741 6885.0895 8679.783 12578.1026 5445.7778 3516.6634 3443.9773 121553433 exaa(moxf) Organic Remediation Chlorinated solvents NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 2514.6862 4481.591 3881.5165 4852.1567 4213.0181 30459.4261 5358.7705 2724.3594 2961.9045 5541.3718 300769819 amyA Carbon Cycling Carbon degradation Starch Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 32719.1734 19237.4636 13022.6909 2962.0591 254820633 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 3318.396 4697.2277 2854.7175 6940.1788 11334.2677 3657.8698 12547.9815 2461.813 4749.4272 14775.948 4183.8562 4071.5356 4761.8657 7328.786 344039918 arylest Organic Remediation Aromatics Other aromatics Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 3175.3573 289471189 dsrB Sulfur sulfite reduction NA uncultured prokaryote 6747.4223 329914520 urec Nitrogen Ammonification NA Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 2362.476 15319.5156 16979.7421 112462819 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 48929.4133 3658.9739 7544.0646 3518.8348 323365898 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 1872.2572 70199.4562 3849.5115 5960.0661 3463.4879 3813.0402 2461.4361 347819363 urec Nitrogen Ammonification NA Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 5224.7276 9426.2921 76787.7102 2156.6725 2156.6725 3777.5007 19174.242 3389.1033 10773.0612 10625.4408 2078.8266 5907.8677 24514.0658 226323310 amyA Carbon Cycling Carbon degradation Starch Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 5143.115 5065.7746 7148.3485 16975.2926 68562.8444 5352.645 4055.9464 5527.8355 2328.3509 3178.1269 488343.862 2001.0633 2911.5319 3514.5363 2255.7232 327372605 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 2974.4127 16179.0922 16179.0922 2137.8576 22293764 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 7987.1214 9347.0671 8401.1439 5793.9585 488640.5349 6297.8505 74589.097 73724.3546 43394.7903 10370.0266 5243.3403 306531792 nifh Nitrogen Nitrogen fixation NA Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 19265.165 222442430 cysI Sulfur Other NA Staphylococcus capitis SK14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 3339.8876 6442.8842 2703.8075 307546376 ppx Phosphorus Polyphosphate degradation NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 2321.8653 3477.688 7324.8247 2000.6638 3484.9174 5126.9875 305673034 nasa Nitrogen Assimilatory N reduction NA Bacillus subtilis subsp. spizizenii str. W23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 3566.837 384439702 catechol_b Organic Remediation Aromatics Other aromatics Thermus sp. CCB_US3_UF1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 8181.044 451366.6399 9763.3755 5005.5274 2149.8915 2149.8915 3205.7177 4103.8005 51637.2231 398363819 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 2632.1094 4555.9299 2288.9917 67910.5186 4285.4231 7840.224 3725.4124 22554.3422 2222.8953 5771.1435 13333.8568 4634.5389 5432.67 2245.6493 8866.6258 6051.8696 46127545 phospholipase_B_fungi virulence degradation NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 63664.795 66354.5622 2507.9653 87136607 xylanase Carbon Cycling Carbon degradation Hemicellulose Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 40117.2389 2339.6887 2858.2877 67655.9407 171120.8075 8276.2993 4334.2469 4822.8869 4822.8869 438818.9721 5566.3248 5192.6408 1286733.2666 5817.4837 8792.7492 230669.6093 4972.7554 6106.0519 37831.7137 5953.8183 2911.6953 5228.9203 6963.3349 2473.0979 6116.8728 46122145 mer Metal Homeostasis Mercury Detoxification Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 2207.2982 4625.9131 2595.8161 2595.8161 221069363 ben_bcla virulence NA NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 3217.8357 4467.9417 4738.6231 4799.5433 52017.6377 3601.0998 11259.684 2248.6035 2670.5039 3123319 xylanase Carbon Cycling Carbon degradation Hemicellulose Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 3381.774 2389.0896 2920.126 294982509 cellobiase Carbon Cycling Carbon degradation Cellulose Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 5895.9114 2622.7296 2622.7296 332184521 ppx Phosphorus Polyphosphate degradation NA Francisella cf. novicida 3523 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella novicida; 10070.3308 2377.6499 119693489 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. KMS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 10623.4277 6535.729 8718.042 301635045 amyA Carbon Cycling Carbon degradation Starch Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 2328.3398 18181.746 8588.71 5403.2707 2119.7563 363406972 ara Carbon Cycling Carbon degradation Hemicellulose Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 1994.4913 5476.4377 5215.9399 4649.5904 7254.4054 5472.4474 2220.1003 3795.523 3572.4381 238544296 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 6293.5667 3171.3814 3801.3191 59196.0993 3754.8461 3523.7151 3523.7151 3493.2023 3578.0814 5967.2077 2469.9728 6376.9153 2081.6033 7854.9906 5605.597 3208.4046 4426.0292 2180.2468 5738.4037 302347021 chitinase Carbon Cycling Carbon degradation Chitin Prevotella melaninogenica ATCC 25845 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 2537.7235 3797.0571 2473.5 5303.6663 170181169 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17665.3979 3661.6287 2007.678 332993516 phytase Phosphorus Phytic acid hydrolysis NA Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 3774.1282 4076.4396 399111822 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas pseudoalcaligenes CECT 5344 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 4020.201 76843.2819 5604.7214 70996877 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 22151.6154 4033.3124 25847.9537 9870.7324 8912.4466 4890.827 268615472 cellobiase Carbon Cycling Carbon degradation Cellulose Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 2400.5379 5645.6998 294054466 amyA Carbon Cycling Carbon degradation Starch Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 2465.5217 7795.2881 6011.7275 2490.4548 72879.5326 4183.7779 3975.3065 10319.542 7978.2914 6641.0484 2611.5032 8610.5838 3386.451 2284.8804 46109842 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 4793.3294 3320.1292 3816.9105 2987.8438 83085.4948 5101.6626 4623.4883 5328.4473 4253.9905 4253.9905 6875.746 8606.7907 5767.6425 10242.4991 5832.1825 4766.5403 5086.8514 3201.2356 12050.052 4737.5749 18213.5761 4559.2781 8279.3448 3215.9157 4514.5367 3848.3564 2576.9867 29825.5123 23493163 amyA Carbon Cycling Carbon degradation Starch Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 2270.5207 4584.2072 2575.8207 4203.0161 6438.0021 4983.9529 5006.0321 10471.4163 7501.1185 3694.7747 3689.1353 11899.029 118424451 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1999.6583 347758955 terc Metal Homeostasis Tellurium Detoxification Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 2546.0743 3589.5549 66586.3045 2442.9145 2442.9145 6507.6013 4450.2395 4792.0174 3051.694 5913.9775 8349.1566 5023.2226 2170.0949 3338.272 4873.1971 336120299 narg Nitrogen Denitrification NA Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 22098.1605 18723.5452 390618455 linb Organic Remediation Pesticides related compound NA Mycobacterium chubuense NBB4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium chubuense; 5309.7798 5249.8855 13581.8535 4303.3377 8033.3505 5565.5448 377659993 fccab Sulfur Sulfide Oxidation NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 3731.8435 2621.0758 2621.0758 9243.9376 4295.5552 4585.5908 5692.8021 16361.1023 19068.977 5855.6341 6264.5625 6907.4251 4677.3993 4053.1858 2585.5233 6847.956 63029752 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2511.0006 3187.6244 4024.9906 4384.6246 4384.6246 4220.6792 2828.6109 5030.5028 6927.2074 5980.3244 2045.0336 2541.0379 3545.0244 5165.0605 261855695 rubisco Carbon Cycling Carbon fixation Calvin cycle Halothiobacillus neapolitanus c2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus;species:Halothiobacillus neapolitanus; 8016.9044 1937.3503 187924206 ophc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 235687.175 134784.3877 14891.6655 212556953 amyA Carbon Cycling Carbon degradation Starch Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 2369.5251 4042.8816 325302134 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 3701.474 2452.7865 85074.4474 3844.3215 8103.1746 6140.2795 7336.7076 8444.9223 2633.1027 2702.1104 5531.7921 2490.1745 14268.0949 6849.1952 6433.798 3163.869 3740.6366 7877.4861 337276311 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 2588.909 4148.2562 2885.2822 5563.7556 340617010 chitinase Carbon Cycling Carbon degradation Chitin Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 3323.7733 3126.3841 5889.43 2435.3497 85817.0044 4332.0267 3850.8296 14328.8601 5877.2203 5877.2203 2733.6052 17788.651 3635.797 7251.6293 5058.8729 3087.819 7173.0588 8949.7225 5550.6493 8043.8297 3469.2854 3005.4774 5615.5765 2572.6207 383775092 B_lactamase_A Virulence Antibiotic resistance Degradation Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3560.5076 4368.1217 115449.105 3973.3904 5507.6637 2607.0419 2599.3894 3738.3688 3805.2473 6682.3962 2620.0371 2510.013 358754972 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 3015.1473 3548.789 6619.0199 5712.2338 3363.9546 3363.9546 56370.3604 5855.8883 4973.254 4674.7382 2667.9785 9089.6772 8887.53 5714.3494 9584.3561 2782.6689 8885.6886 160917829 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2219.4386 4710.65 2154.5768 4372.5871 5345.4471 345124455 tktA Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Tevnia jerichonana (vent Tica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Tevnia jerichonana; 6888.5519 3774.0518 2759.7579 6325.1824 5267.0348 5343.1716 2903.5978 2633.9408 255021330 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 2201.3106 3321.4475 83105.293 4102.3092 3908.3364 2821.2805 2821.2805 2708.7033 6689.3708 4985.4797 5131.6324 2726.9544 8121.0491 3854.9033 5018.319 1713.5872 7234.8379 371574648 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4912.1157 3484.8909 218519231 cysJ Sulfur Reduction NA Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 2907.849 5828.5869 9597.6468 12743.3548 4158.5968 23746.2946 3701.6252 10480.6336 5194.3469 3588.1747 7103.7063 4402.323 4854.1989 5145.2544 3825.6867 3426.7711 17674.7558 6039.2655 220935354 dsrB Sulfur sulfite reduction NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 22414.2099 5213.296 628237.4726 7080.5163 7080.5163 2516.7513 3906.8545 4414.713 299132901 mer Metal Homeostasis Mercury Detoxification Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 2504.2536 3437.9198 2891.7641 4365.1137 2738.5233 2738.5233 8040.131 4012.3867 10055.6536 13335.4596 5345.6295 1742.9949 2535.8896 3714.8699 14105.9924 407362559 alkk Organic Remediation Others NA Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 77479.5801 63000.1314 3871.8116 4837.1644 171698501 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4478.0783 386715464 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 2177.6111 8654.2261 6470.3438 36273.0296 151281483 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 2628.3328 7670.134 357059452 nifh Nitrogen Nitrogen fixation NA Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 2611.9539 4878.5275 3446.9482 4004.7798 2162.7059 5046.7286 2965.2115 3043.7088 9193.4228 313150345 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Terrabacter sp. DBF63 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Terrabacter; 3752.2586 3069.0597 4154.5195 65589.6702 7260.1569 2611.2988 6075.8268 5959.2649 4700.2731 5084.2711 2544.5813 2836.2451 7302.6195 1608.0584 5619.1457 3976.3546 4300.4498 343513514 terc Metal Homeostasis Tellurium Detoxification Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 15497.2549 3902.2425 5672.3892 8577.2352 6190.4221 4968.1568 359410138 nifh Nitrogen Nitrogen fixation NA Clostridium sp. DL-VIII superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 3958.4464 6427.3669 3652.8313 111059858 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 2802.8136 4067.678 4309.6401 2144.488 2144.488 6320.044 5677.7644 3634.196 6446.7375 2362.1091 6390.5544 4810.5031 7362.6382 4420.9607 7438.5124 3971.7625 2654.8225 3824.4444 294488859 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2923.5974 3647.6082 2254.0728 2254.0728 76408.4607 4070.3462 5436.7035 2431.8149 7479.8744 2320.2206 25206.0379 4017.1107 6476.6992 3555.7613 2706.2439 12857.6735 119469897 cellobiase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 3789.1106 8495.3526 3431.3753 24496479 cellobiase Carbon Cycling Carbon degradation Cellulose Fervidobacterium sp. YNP superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium; 3651.3816 7215.9639 7693.973 7942.3889 238501288 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 19576.3634 36629.5341 160939871 amyA Carbon Cycling Carbon degradation Starch Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 2619.7916 4552.4913 24137.1903 4566.449 384200530 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 4364.0253 3838.0284 3553.3199 89274.0827 6586.9458 26817.1685 26817.1685 6211.3563 4120.7483 4466.7758 2988.432 2369.6674 4636.9473 2166.5991 3942.7545 6381.8264 227494788 amyA Carbon Cycling Carbon degradation Starch Actinomyces coleocanis DSM 15436 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces coleocanis; 2477.4114 8090.1499 5248.3425 5248.3425 2526.9563 340523689 poba Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 2700.0621 7951.8886 16885.2728 208576.8097 5026.4114 51973.5861 2765.5621 2765.5621 13014.6895 11361.3848 6277.4267 320123250 linb Organic Remediation Pesticides related compound NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 2081.5198 56798383 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 9867.2123 4789.6444 150064.7118 3331.7267 3454.6071 3454.6071 6806.1558 9594.2802 13782.3351 2702.4263 4839.2722 13119.1205 6259.2318 5823.501 4417.4188 3666.9848 7215.9015 2926.8558 5211.4939 387853880 fccab Sulfur Sulfide Oxidation NA Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 4307.7034 166860730 badh Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2295.7032 2788.6863 4323.6299 6412.3979 2496.7453 7265.2397 6964.2141 7440.5533 118424404 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19049.8135 3148.4168 41984.6042 3627.6686 3601.974 3601.974 7170.9613 3644.0088 2242.6065 4900.7166 255275019 urec Nitrogen Ammonification NA Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 2455.3726 2766.7587 9680.654 371449993 nagg Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni ATCC 11996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 2372.2786 33049.5974 4044.2642 4246.4457 119401008 amyA Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 10923.5433 3997.3076 4760.2929 376387720 trze Organic Remediation Herbicides related compound NA Klebsiella oxytoca 10-5245 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 2058.8115 2780.9546 4201.1541 7139.318 335420097 fccab Sulfur Sulfide Oxidation NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 2632.7762 5191.6806 15309.7371 5979.3681 2996.6962 18495819 chna Organic Remediation Other Hydrocarbons NA Xanthobacter flavus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter; 5731.7047 6671.9551 5487.7441 16051.6622 65253.0108 5580.5931 7390.4937 5370.0115 2489.2633 2489.2633 3355.1585 6050.799 4216.8644 11984.4889 11629.0538 3102.4569 2804.3673 8141.4564 5934.7211 18412.886 6577.0022 10276.0488 2545.4848 4407.9064 4116.9075 28362.9433 134142977 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4025.9191 4227.964 2620.5275 2620.5275 13765.4316 3811.8927 4773.2167 4772.8127 3636.2918 2917.4699 7702.6951 4339.5239 13592.7146 4010.2468 6468.7285 1853.9692 8408.4307 3528.3036 4952.7415 355368612 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella histicola F0411 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella histicola; 2188.3323 6373.711 5779.5825 2395.2664 5198.4848 4628.0473 2708.4387 9884.2972 4620.5996 5717.1008 6546.3096 5368.6327 2312.2054 9975.7152 5512.9423 6435.5523 3235.3423 4668.6687 3180.5844 3238.1076 6245.0413 373849320 nrfa Nitrogen Dissimilatory N reduction NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 7700.2482 10938.6319 4401.4116 7000.4649 7000.4649 5205.996 3898.1756 1583.3698 328523436 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 2214.3326 6150.0766 2357.7517 8428.9745 8428.9745 6821.836 3860.5438 3884.6959 3017.9018 10778.7244 2350.6363 3629.4672 4197.3093 2382.5256 11987.6017 50818137 mcra Carbon Cycling Methane Methanogenesis Methanomethylovorans thermophila superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanomethylovorans; 2983.2757 2777.4269 3164.0966 4245.5891 5166.0686 59127.1608 3937.4801 5058.5254 2849.1255 2849.1255 2910.63 6302.6239 3399.2341 3748.9137 4210.2921 9059.4708 1909.0175 8320.0135 4924.2208 6689.8883 3278.6856 2277.6215 3521.0862 8595.7504 307944919 arsc Metal Homeostasis Arsenic Detoxification Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 12005.0131 157804765 APS_AprB Sulfur adenylylsulfate reductase NA Thiothrix nivea superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix; 2452.767 3883.2648 78340.8796 6500.7417 3064.9716 2522.3437 5557.354 257459568 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter gracilis RM3268 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter gracilis; 2133.7853 6436.2297 4172.733 340959126 phenol_oxidase Carbon Cycling Carbon degradation Lignin Chaetomium thermophilum var. thermophilum DSM 1495 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium thermophilum; 4184.5251 8129.0721 4357.7162 222106590 amyA Carbon Cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 2373.3651 5136.0576 3595.8481 3849.3059 8386.1244 2739.2022 27138.4129 20426.6971 5512.6559 8961.7398 294999378 bphd Organic Remediation Aromatics Polycyclic aromatics Bordetella sp. IITR-02 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 2606.2948 9914.0302 9914.0302 2991.8405 4807.0088 226836705 gdh Nitrogen Ammonification NA Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2848.5992 3172.2539 4110.9343 5640.1983 2781.7496 2781.7496 6846.2895 4620.6098 2986.1798 12712.008 5446.9719 5479.5935 3492.1199 6065.3244 169793388 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2343.7706 1910.1815 4074.2107 3504.3145 5673.0348 4585.899 9411.6389 2267.2188 219544500 pcs Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 4764.4468 4158.3065 3600.7856 5259.129 5583.2075 10359.9292 5418.0208 5949.5871 2404.2056 8585.4959 5534.2449 2877.4247 2893.0762 5153.1751 145220525 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 4111.3802 3153.8541 4014.3192 3862.618 4118.7831 6378.6651 5397.1618 8877.9741 6156.379 2722.4682 8037.7694 5878.1998 2393.881 8407.6947 3721.1933 63086958 cutinase Carbon Cycling Carbon degradation Cutin Phytophthora infestans superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 28311.8277 4885.9373 296114907 pgk Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 3091.864 2516.8899 5185.875 4039.556 3269.6226 97819.6611 3202.05 3789.2474 2247.9097 2247.9097 2806.7902 11648.1622 4835.09 3978.2253 8941.6537 11284.1881 3030.7049 14574.5902 8148.79 3540.9199 12336.7254 5224.8374 1750.7171 6646.6273 3403.2803 9705.2096 126734307 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5995.2294 8758.725 11560.1729 5793.763 5417.6529 3543.7091 12413.9821 5983.6197 5101.815 9090.9642 13914.4528 10805.1201 12739.9663 13551.7169 8696.0414 8838.1028 5845.467 6162.2067 4680.9208 6019.4105 239802875 cmci Organic Remediation Aromatics Other aromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 22153.4748 19560.7353 4293.7013 5965.7716 10258.9175 254272009 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 3416.0918 10119.9634 371684.7013 300781189 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium genitalium ATCC 33030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium genitalium; 16804.9827 3420.2836 41549.2063 17454.8975 3328.2724 2770.9085 12906.8436 37900.4016 31332.0603 365182726 cmci Organic Remediation Aromatics Other aromatics Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 2555.903 14584.0829 14584.0829 5983.3105 2287.0822 29815.7343 298551173 amyA Carbon Cycling Carbon degradation Starch Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 9354.4759 37460.6222 3608.5949 26538.5901 311217934 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 2332.8466 16483.0244 5190.6627 3936.191 7093.0575 24239.6073 2377.2317 2377.2317 2819.5371 10593.0793 3946.4862 6197.2666 10618.6327 6566.4668 2789.658 3435.3798 10769.1294 10628.953 3086.7007 5693.9432 7692.1108 2535.5765 4339.3332 870796 GAPDH_Euglenozoa Other Phylogenetic NA Euglena gracilis superkingdom:Eukaryota;phylum:Euglenida;order:Euglenales;family:Euglenaceae;genus:Euglena; 3851.8774 3789.1948 71685.204 5802.8911 2692.1226 2692.1226 7220.017 6100.1631 13338.2404 6546.2374 7073.3725 2472.4184 14118.8599 7355.2211 7675.9644 3267.3961 4745.1766 16525.783 112462209 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2427.3748 3316.4152 66369.321 5776.6612 5667.0209 2240.6188 3346.8306 5389.9746 9451.9579 6130.3237 2247.1034 3545.2923 1995.7507 259346564 xyla Carbon Cycling Carbon degradation Hemicellulose Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4528.232 4350.3897 4513.9353 6771.7322 5191.3145 4969.4691 5457.1685 6731.9161 5776.3966 7317.306 3776.8968 3804.7435 2984.6439 5663.619 126464391 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 3129.5894 3888.1784 12834.1731 6139.6873 68131.5741 10420.4993 6032.8252 7308.3691 3281.2079 3281.2079 7513.9068 5439.4963 5158.709 3302.147 3280.1116 3254.0089 13012.44 5124.5723 4883.4948 3152.3677 3504.981 3557.8626 4909.5394 392947346 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 2430.2474 2604.6546 4164.0586 70436.7273 9478.5006 4221.5272 6202.6655 6175.3528 5544.035 2282.1393 5742.3064 10667.6237 4513.2872 6848.2295 3260.5641 3530.0943 3433.1905 5462.3992 384075829 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 10303.3356 6856.7171 25901.386 2597.7171 281421953 amyA Carbon Cycling Carbon degradation Starch Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 17313.6519 5637.0328 4742.8737 9738.8643 23253.1418 7788.8146 4205.52 390927329 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 4889.702 4522.0561 5981.6384 5901.2069 4446.839 15742.4091 3351.1581 4810.789 4781.4711 90105593 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11075.1196 3518.6342 3657.1082 3757.7358 2133.802 2701.6434 4278.657 1936.3481 3851.9377 2384.8545 258576929 glx Carbon Cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 4271.7448 6321.2492 5488.7321 5316.0243 3036.6495 24174.5304 309245852 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7005.1161 5882.8511 5842.3423 6514.6051 3262.5425 5341.8264 2311.8862 2530.3987 158521015 aps_apra Sulfur adenylylsulfate reductase NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 2121.7975 3357.7933 6293.466 85716.0849 9478.7583 2026.2844 3759.656 14791.9944 183173473 linb Organic Remediation Pesticides related compound NA Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 58168.905 5705.8893 3927.1125 514041.3227 4256.6786 5355.0394 6502.3186 6502.3186 3107.7901 8741.7779 7134.9261 14932.8419 18856.9795 2918.6593 7159.0853 10242.151 5191.5016 6693.9289 5031.7239 3230.1419 10390.4222 148654711 MCM Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 4068.1975 5737.0482 5383.336 2035.7572 5875.994 254822841 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium intracellulare ATCC 13950 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 3718.0435 1855.0742 1855.0742 2573.842 5459.349 109290301 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3720.392 3088.7617 17226.9182 291582265 TIM Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 3152.5117 5245.4083 3344.0305 3344.0305 5713.4258 3437.7189 8118249 sqr Sulfur Sulfide Oxidation NA Oscillatoria limnetica str. 'Solar Lake' superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria;species:Oscillatoria limnetica; 9343.0742 41776.2264 5102.4527 6625.553 2675.1117 2675.1117 3065.4251 9451.624 4275.151 13914.6247 2229.9252 3750.4088 2698.5014 7754.7291 10636.426 6144.6086 388608872 catb Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2881.1416 312214090 glx Carbon Cycling Carbon degradation Lignin Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 11141.771 63793.6177 332307308 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 12545.2603 6103.1498 114832.274 6173.9223 398309614 vgb Virulence Antibiotic resistance Degradation Bacillus mojavensis RO-H-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mojavensis; 4176.6274 1982.8353 10420.0913 2797.9278 59473.8454 5587.3566 3572.2293 3874.7385 8446.3532 4649.4914 46836.1354 9709.906 4484.9189 4505.6821 3194.5755 6256.8811 2664.1734 10944.2545 4346.3392 6182.7148 2505.1008 3038.5398 31292.6097 3030.7576 6346.5501 379738177 narg Nitrogen Denitrification NA Blastococcus saxobsidens DD2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Geodermatophilaceae;genus:Blastococcus;species:Blastococcus saxobsidens; 3834.2148 4173.2376 7796.9829 4507.9621 2536.5126 4264.924 213013102 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8486.5675 3184.1798 3602.9913 5879.972 2446.7815 7346.0756 7763.8735 7480.7719 4402.8883 2476.4417 4330.5973 9474.015 9591.0727 2541.3918 7732.5623 4449.8065 156523838 nifh Nitrogen Nitrogen fixation NA uncultured cyanobacterium superkingdom:Bacteria;phylum:Cyanobacteria; 2851.2074 8305.9431 71733564 nitro Organic Remediation Others NA Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 2726.5997 227496067 terc Metal Homeostasis Tellurium Detoxification Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 8655.3147 36787.813 3538.5241 7933.6751 3920.0711 25706.0057 2260.8313 4523.8713 2647.9738 9126.7866 5398.5098 4615.7315 5867.3172 9520.8487 8689.0289 6589.3214 317124932 amyA Carbon Cycling Carbon degradation Starch Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 2727.1647 5973.3072 5973.3997 4254.8417 5263.6273 3868.9171 13955.315 224520874 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 2114.4867 4294.7187 82459.4358 7129.8451 3838.0967 3048.5946 15828.6493 4956.1156 2633.8476 3944.5241 4355.5049 6509.0871 2680.9034 2932.1967 7396.0635 2663.0809 5244.717 157149189 amyA Carbon Cycling Carbon degradation Starch Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 6293.6433 392408832 badh Organic Remediation Aromatics Other aromatics Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 20955.5081 6964.133 6964.133 7836.5867 7560.105 35921.0003 156110776 alginase Carbon Cycling Carbon degradation Alginate Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 3260.7924 7025.0807 11815.459 331698023 nitrilase Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 2903.8702 5613.9673 4906.9629 4857.335 2492.6384 2492.6384 5969.6241 5069.35 5844.675 3068.003 6348.7733 6817.7146 2871.9476 3550.369 3444.1433 6688.9894 329848900 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 2372.6188 4092.1979 4109.6058 5454.3639 7020.4449 6613.5991 2728.4696 11975.371 4382.8187 3968.2433 4143.9257 3037.2864 371960076 terc Metal Homeostasis Tellurium Detoxification Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 2739.6914 2774.1601 2828.9093 68129.537 4164.3297 2163.3964 2163.3964 6344.6689 4740.5781 5796.7056 4170.9344 6327.6761 2604.9169 15390.4933 4845.1925 5991.5586 3105.6229 2390.5872 311029121 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. m3-13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2892.6641 3789.1037 3480.0269 170016595 ppx Phosphorus Polyphosphate degradation NA Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 2212.8103 68529.4764 395773716 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces acidiscabies 84-104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces acidiscabies; 2612.6649 12853.0888 69174.6502 5852.1004 3927.9022 4282.3155 4282.3155 9161.6805 4710.7174 19709.8205 16850.997 16914.3535 9542.5302 15115.9059 3391.0085 2767.6793 10429.8049 3467.9271 261372847 rgl Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 30306.9064 2960.4047 78358.5589 3809.5403 4005.5984 4005.5984 6662.7987 4386.7758 12303.8922 3216.9851 9365.5363 6403.9676 23082.2295 2293.5101 3328.7252 9564.0261 312898656 ppx Phosphorus Polyphosphate degradation NA Megasphaera micronuciformis F0359 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera micronuciformis; 2609.0797 4837.1457 4109.6443 2676.3916 292674900 nira Nitrogen Assimilatory N reduction NA Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 2782.2373 5123.0587 6361.1508 5382.6191 2430.4963 55429.9203 4006.1532 6841.9658 10132.3871 5262.0467 5262.0467 3836.6945 5652.2194 3236.1883 4475.8309 13997.0739 2292.4292 10727.5158 7979.558 67158.752 3166.4226 3397.1471 3867.7538 2990.9725 124363415 atza Organic Remediation Herbicides related compound NA Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 2558.1417 3730.1193 302684339 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 2829.2933 4219.3714 2949.7039 247537131 trze Organic Remediation Herbicides related compound NA Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 5401.218 2732.6179 170941774 Sir Sulfur sulfite reduction NA Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 3196.7241 3927.3748 78691.805 3603.0266 2027.4006 2027.4006 4779.281 103820.1299 3969.2652 2450.8191 11054.3597 2349.6623 8922.2137 7116.6766 5563.9095 1970.8648 2963.5521 5294.9174 2794.4761 5651.1328 357031418 ppx Phosphorus Polyphosphate degradation NA Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 3027.1859 4705.5974 2484.7107 3151.388 8960.0267 170516856 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4224.2553 2099.3398 3097.6719 5879.0511 4307.5558 7205.3542 3317.2623 6486.521 6468.3868 6124.9175 3555.5043 5398.7027 4047.9543 8995.9301 3386.2598 3750.8696 3782.7134 28807070 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus RIMD 2210633 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 2719.469 3063.9435 2167.5585 11138770 actin_Cryptophyta Other Phylogenetic NA Pyrenomonas helgolandii superkingdom:Eukaryota;class:Cryptophyta;order:Pyrenomonadales;family:Pyrenomonadaceae;genus:Pyrenomonas; 3620.8767 84512.7991 6861.7272 5913.7787 18467.4807 8636.3299 8636.3299 3068.3931 4455.4129 5987.5977 4945.9516 9888.8205 2302.2486 4955.7476 223714296 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4020.5669 3181.1493 3190.7915 3190.7915 2358.0144 5846.1807 2884.2837 3915.5157 3444.9065 5904.384 19072836 inulinase Carbon Cycling Carbon degradation Inulin Paenibacillus polymyxa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 20370.6714 22655.7118 2252.2019 289523715 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 2601.1986 2824.5233 119395291 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 3954.3002 2595.7543 319900132 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 2168.2207 5688873 tfth Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4242.7277 262014326 protease_serine_fungi Carbon Cycling Carbon degradation protein Drechslerella dactyloides superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Drechslerella; 2203.3673 374854896 arsc Metal Homeostasis Arsenic Detoxification uncultured candidate division OP1 bacterium superkingdom:Bacteria; 8411.3325 7866.4627 21574.6214 9373.6203 4643.4854 4971.09 3779.5397 4743.2887 6547.6495 146155276 ara Carbon Cycling Carbon degradation Hemicellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 2328.2301 9595.1178 6674.5729 2695.79 2796.6578 2733.3395 2782.6781 209907326 arsc Metal Homeostasis Arsenic Detoxification Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 4029.9064 3555.4003 5066.5158 3568.9484 16367.7112 2172.522 2172.522 3775.9834 3386.0277 2361.5922 4477.4329 17866.5582 2728.1116 3251.3646 158312905 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3094.9408 74420271 amyA Carbon Cycling Carbon degradation Starch Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 2252.9944 3571.8351 3629.1591 5231.6143 3398.7678 3398.7678 6629.3822 10303.4827 7926.935 1720.8153 2354.5506 91191048 tehb Metal Homeostasis Tellurium Detoxification Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 2294.2493 5729.7035 99919.5218 4897.8657 3322.5587 3322.5587 5517.6137 5013.4191 9415.5968 7665.5484 2832.5223 3671.3305 3097.5504 90332881 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3215.9416 2421.755 4032.0917 4452.1429 3944.1391 6593.9315 3398.1091 7567.3221 4196.0289 2107.1481 10931.3608 1681.1271 19370.4786 2020.7054 145230289 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 7315.7602 7279.3705 2482.2203 4332.4993 2367.9008 218564122 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2830.1699 102766.9087 5843.515 3060.0059 3524.6877 2093.8472 6509.2763 385210410 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6536.8554 219939156 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2477.8848 4010.8379 4728.6404 69122.7064 1892.9062 1892.9062 6238.8251 3696.0493 5077.2236 3441.4805 3755.48 255505896 xylanase Carbon Cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 2887.2782 3453.3722 63066.7379 4464.677 2677.8343 11159.2946 4426.7519 84047.6151 4979.4696 4033.9554 4298.3443 2265.458 5532.1154 8204.971 5170.1081 1922.9639 2832.4957 3003.9058 5296.8342 83835803 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 2475.4075 10708.3291 34795.7596 196228104 RgaE Carbon Cycling Carbon degradation Pectin Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 29273.4591 4465.5105 5513.8572 32188.8352 15277.8159 4162.6199 3428.0026 345892886 dsrB Sulfur sulfite reduction NA Desulfovibrio sp. 6_1_46AFAA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 2097.3276 123984010 phytase Phosphorus Phytic acid hydrolysis NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 2516.4023 3552.7452 3778.1859 3512.2549 5575.0931 66429.2306 7392.4068 9315.7045 6410.0777 13815.714 5036.6492 6618.2189 168970.6826 5348.4086 2131.2867 8443.6706 3610.5337 4679.5787 3151.7734 12503.0484 425464817 narb Nitrogen Assimilatory N reduction NA Microcystis aeruginosa PCC 9809 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 3343.6982 4220.897 4196.2132 88856.5484 4513.8749 8658.2013 5451.86 4117.8641 6909.368 6790.3835 2598.9531 7432.5326 2458.3136 10515.2966 7268.7914 11232.03 2978.3613 3756.2252 4174.3033 3140.2724 8489.9119 291088954 ppx Phosphorus Polyphosphate degradation NA Edwardsiella tarda ATCC 23685 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 7760.8496 5729.8409 6972.1545 13751.5032 3264.8027 3074.139 5049.3086 37778806 exoglucanase Carbon Cycling Carbon degradation Cellulose Fusarium lateritium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 2849.9628 26200.2322 89512454 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 1953.578 315534.965 4731.5961 2273.1184 2273.1184 5628.9393 154250997 amyA Carbon Cycling Carbon degradation Starch Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 6221.4873 7365.3291 3703.1302 148832047 terc Metal Homeostasis Tellurium Detoxification Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 2954.9715 4956.7728 54712.8333 4705.7598 8056.5353 46839.6091 2030.0368 4769.6795 365756007 ppx Phosphorus Polyphosphate degradation NA Elizabethkingia anophelis Ag1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia;species:Elizabethkingia anophelis; 2247.1093 2098.1291 2748.4752 1926921.512 36806.2328 24848.5326 24848.5326 3120.2654 4513.6123 2811.4124 6376.1329 147743496 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5704.017 3166.1779 3166.1779 8420.7439 84494335 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 3175.9828 5300.2158 5552.0311 2239.4539 2264.439 18833.6842 4227.1559 407999834 cmci Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. avellanae str. ISPaVe013 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 3308.7552 3421.0819 51667.7911 5679.403 3559.1249 9646.6326 2180.566 3662.1611 4607.8564 377541008 nrfa Nitrogen Dissimilatory N reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 2576.9063 4368.9089 4147.8354 8669.9487 7127.6303 11036.4747 3436.7336 5833.483 1990.2421 2918.2101 3840.8167 6927.6522 260605921 inulinase Carbon Cycling Carbon degradation Inulin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 2352.848 2477.7588 352100605 cmci Organic Remediation Aromatics Other aromatics Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3750.9243 3922.0687 2486.3627 2486.3627 4644.3982 5397.4289 6881.7577 3147.9181 217413262 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 3025.7153 4947.8609 60869.1406 4737.3742 3283.073 3283.073 2713.8391 6157.4993 5371.7291 4634.0168 5087.7428 2224.2193 4827.7755 7098.0852 3640.7568 19483.7515 4613.4698 2621.3975 2663.9566 3245.1616 2205.711 146409734 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 24585.1891 8949.4247 16743.3691 94304.1879 8123.7085 46916468 nitro Organic Remediation Others NA Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 2618.2324 2182.8015 171911022 cysJ Sulfur Reduction NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 2319.4988 11845.0358 12098.6412 92709.0793 4066.3694 12411.8104 37762.7512 5017.828 5017.828 10354.6486 8799.7962 34502.6585 15314.4572 76192.9347 16414.3195 13273.8356 7346.2104 3428.2547 6867.0287 5014.9507 2629.7156 334888855 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 3471.3194 2698.1882 4490.9783 228726.3813 2606.8668 6900.0273 14429.7312 2958.0879 3113.6466 5925.0667 5242.0099 5671.0005 1833.3209 3552.4936 25947.0151 2464.5428 388002615 linb Organic Remediation Pesticides related compound NA Pseudomonas fluorescens SS101 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3103.7695 3925.9491 5308.8264 4747.648 2321.682 9251.8389 2197.8264 2842.0779 5748.79 11764.091 11493645 nifh Nitrogen Nitrogen fixation NA Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 5403.0933 5664.9467 14024.0282 4235.9998 4235.9998 5151.2675 3913.3072 9663.4379 4441.2654 6935.4499 2563.2557 3131.7844 5421.5528 257076762 fccab Sulfur Sulfide Oxidation NA Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 2478.6923 197631747 amyA Carbon Cycling Carbon degradation Starch Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 3092.3906 4508.9672 3096.7503 4954.9091 333448768 nifh Nitrogen Nitrogen fixation NA Cyanothece sp. LCRNK_21 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 16591.2828 2729.7047 261204131 phospholipase_B_fungi virulence degradation NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 2937.4923 167594267 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2733.2948 3442.9981 310829617 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 9471.3794 5611.3571 6846.2547 299064389 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 2157.0677 3275.8381 2774.359 71382.8272 25445.4557 1984.9668 1984.9668 4237.8428 3607.8193 5516.6024 3276.3422 10367.7101 5396.9702 38801.2998 3265.7869 5231.5991 2228.8336 9976.9422 88862709 ben_bcla virulence NA NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 2797.2748 192897542 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 2925.4073 16174.6774 16174.6774 3160.3059 4642.666 4904.9088 6954.5441 84778323 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3458.0589 4334.6828 4699.4133 15509.5875 3179.7163 2331.9993 5260.0558 4942.8806 5201.9523 77359848 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 2745.4298 4607.9301 4146.3165 102082.2195 7800.5242 5457.8615 7695.9873 7695.9873 5083.0353 12834.1919 4380.1229 8415.3801 7284.1881 3213.0826 8186.4866 2775.5416 42929.9028 6936.2691 7623.209 2338.636 3151.6528 8378.9885 7540.6214 253687101 xylanase Carbon Cycling Carbon degradation Hemicellulose Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 3849.8049 9330.1648 15077475 dsrB Sulfur sulfite reduction NA Desulfovibrio desulfuricans subsp. desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 3182.8991 4655.5556 3237.2024 2218.1018 2395.5654 7618.7743 3397.6705 14730.4958 125861130 amyA Carbon Cycling Carbon degradation Starch Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 3459.2547 74819.7317 11233.8574 5286.4928 10694.48 10694.48 40424.5366 2531.4614 2422.5083 8516.8435 4167.442 1899.6393 292677081 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 2388.7106 3577.3224 4880.4689 5022.1609 4744.2152 5655.2909 8869.0468 3792.622 3920.5344 296446118 dehh109 Organic Remediation Chlorinated solvents NA Methylosinus trichosporium OB3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus;species:Methylosinus trichosporium; 3096.562 27919.5496 167011.0642 5467.2594 4992.2066 9250.578 10132.8386 2845.1891 4213.2363 2538.4937 322719028 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2815.1121 5595.0872 5570.7108 1720.6433 4456.4634 114327490 TIM Carbon Cycling Carbon fixation Calvin cycle Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 3661.7593 2164.3193 3086.9531 1929.1455 1929.1455 8499.3903 3537.4692 5786.1405 8590.2561 3313.1939 4966.9671 3286.1666 9603.6846 3661.8404 3758.2108 3274.2542 4845.5028 255050512 tehb Metal Homeostasis Tellurium Detoxification Neisseria sicca ATCC 29256 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 3325.2117 5151.9676 4320.9059 62711.7046 3753.0114 2700.1432 9015.7025 5028.95 6703.611 6549.4304 2311.2443 3405.969 7217.0835 3366.6052 13450.3917 4575.0195 7238.9176 3843.636 3765.2316 4771.2292 2784.8243 8867.5186 319946549 tehb Metal Homeostasis Tellurium Detoxification Streptococcus australis ATCC 700641 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus australis; 297437.1622 401773912 dehh109 Organic Remediation Chlorinated solvents NA Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 2409.6932 10591.5405 2288.3616 2288.3616 15890.9777 27667.7213 90569466 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2870.0778 2680.6281 3641.0701 8026.1013 4336.9471 5132.7989 1893.4963 5809.7606 151302114 aps_apra Sulfur adenylylsulfate reductase NA Archaeoglobus profundus DSM 5631 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus;species:Archaeoglobus profundus; 17735.6568 7568.0812 6509.0982 156446969 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2893.0055 4020.1836 57171.1039 2653.1873 2653.1873 5808.1831 2158.32 156057639 pme_Cdeg Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 19266.8109 4074.7208 8746.4091 8746.4091 5290.4764 4518.056 18913.9406 6538.329 4414.0231 2470.6352 119353373 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 4171.2119 342354214 chitinase Carbon Cycling Carbon degradation Chitin Cyclobacterium marinum DSM 745 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cyclobacterium;species:Cyclobacterium marinum; 3634.5533 4212.884 5587.2899 11542.8787 1631.8863 295662218 p450aro Organic Remediation Aromatics polycyclic aromatics Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 6756.7507 4043.4827 4755.4263 5497.3291 7367.8172 4033.1964 2810.0722 2772.4005 6246.5839 6293.6592 1843.2872 3452.7817 240167993 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 2288.9259 3134.8122 69328.8675 5320.7629 2906.3176 7142.9359 4817.7648 3352.5826 8843.9422 14216.3855 6416.1565 1929.2488 3295.6731 4428.2192 164455964 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3906.3563 2410.905 5524.9272 66659.7493 20432.9527 35096.6878 12181.6909 6798.1745 223939152 amyA Carbon Cycling Carbon degradation Starch bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 2347.1136 282881738 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 17853.651 3341.7144 3341.7144 3058.4423 2406.8749 302404982 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 19965.2958 17514.4424 86480.2124 6031.4468 307157781 mcra Carbon Cycling Methane Methanogenesis Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 2698.1558 45551.3373 159793518 pcpe Organic Remediation Herbicides related compound NA Pseudomonas sp. PDS-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5670.6219 3423.6873 3607.7493 3088.712 3011.1193 7000.0862 4807.2408 2242.0208 2724.1619 296115942 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter hansenii ATCC 23769 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter hansenii; 2324.4006 4571.4065 4571.4065 169621189 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 9358.7259 4954.0223 7746.5371 2314.2128 441437412 nosz Nitrogen Denitrification NA Fulvivirga imtechensis AK7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Fulvivirga;species:Fulvivirga imtechensis; 9654.9866 62131452 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 2787.7 2731.961 2731.961 4768.9318 71659658 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma cruzi strain CL Brener superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma;species:Trypanosoma cruzi; 2585.9053 3894.6499 2794.8704 6486.6947 5987.3145 3447.9622 4190.9357 82410445 amyA Carbon Cycling Carbon degradation Starch Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 2266.2278 4096.2174 131405.8264 5726.7299 5726.7299 2827.6232 2487.7647 14829.1283 3132.2402 2490.328 313682581 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 3590.6079 59195.4428 6464.0359 2199.579 2199.579 9146.3682 5002.154 13887.5553 10118.8978 3431.236 1884.8021 3626.1583 5056.1579 158336861 terc Metal Homeostasis Tellurium Detoxification Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 2647.3053 4054.5603 9181.0634 4669.7457 4604.1359 5428.9484 11600.8407 6206.6039 2486.1112 4241.1042 114570057 FBPase Carbon Cycling Carbon fixation Calvin cycle Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 3825.0851 262309429 arylest Organic Remediation Aromatics Other aromatics Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 8080.218 4340.5649 4473.398 23768.6674 10269.229 4075.1012 10428.8404 7578.5693 4957.31 6083.167 2404.7849 332377122 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3143.6964 6180.8719 7251.798 2359.2683 2359.2683 7246.0445 3976.6715 2371.9142 4284.4936 3138.0993 61660.1456 227069413 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 8747.1368 3208.8043 6290.3616 7075.7795 312134357 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor owensensis OL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor owensensis; 2436.8106 7177.2383 3016.7673 239587246 nitrate_reductase Nitrogen N Assimilation NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 2396.124 4395.1852 59657.3024 4926.953 6367.5555 6176.9644 4853.3385 2566.8154 6562.8103 4783.2075 8487.9155 2556.9388 6219.893 162135172 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus eryngii var. ferulae superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus;species:Pleurotus eryngii; 2381.8114 5797.9487 3780.7326 4778.262 5056.8715 5050.5253 6155.8412 2165.5118 3349.4462 3431.9749 2534.204 383115490 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3043.9436 220962952 mannanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter crescentus NA1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 2507.4983 3477.9869 13117.3956 156857749 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 5202.3343 4391.6634 113216.0042 58670.9612 30539.0188 24011.405 269960758 alginase Carbon Cycling Carbon degradation Alginate Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 23734.6802 4301.9038 209401852 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22876.4332 2619.8488 3070.4221 2425.6398 302584225 dsra Sulfur sulfite reduction NA uncultured Desulfosporosinus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 1983.3072 5444.1829 5444.1829 3488.3977 7404.9361 4234.5753 9026.0603 378581705 cellobiase Carbon Cycling Carbon degradation Cellulose Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 6209.8207 4985.8665 3994.5015 3743.8133 57560.9832 6056.7386 4639.1646 4918.82 4918.82 5204.6106 11971.6836 4814.4442 5480.4972 5054.3859 2558.7422 6560.3233 6640.3138 6277.2912 11479.3556 4534.8834 9311.7357 4951.9628 5450.3736 5375.3164 2367.3952 10017.442 386361799 bphc Organic Remediation Aromatics Polycyclic aromatics Thermus thermophilus JL-18 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 3282.1021 3801.1308 6336.6691 2499.1164 2499.1164 31925.4431 253580895 amyA Carbon Cycling Carbon degradation Starch Ruminococcus sp. 5_1_39B_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 2838.5875 3649.1533 386272986 arsc Metal Homeostasis Arsenic Detoxification Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 12359.9735 3480.4421 6918.8123 2691.1386 2634.8944 14142.0723 119187549 endochitinase Carbon Cycling Carbon degradation Chitin Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 28248.9954 4542.5638 32455058 protease_serine_fungi Carbon Cycling Carbon degradation protein Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 4777.1505 4108.3658 2616.0492 3013.9599 319952525 nitrilase Organic Remediation Aromatics Other aromatics Cellulophaga algicola DSM 14237 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 3052.489 77267.6766 77267.6766 328522492 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 19950.43705 3964.4866 2738.50345 2738.50345 3900.1489 4388.3705 4951.0852 6280.53325 2195.0599 9658.6881 5353.21615 3912.28625 3749.633 6552.1455 304312509 sqr Sulfur Sulfide Oxidation NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2872.3378 31448.5183 116253905 cellobiase Carbon Cycling Carbon degradation Cellulose Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3338.728 3915.431 3033.3467 8097.8982 4812.1871 7071.9574 5313.3793 6674.0447 2526.6106 6804.6999 8106.7821 3074.9349 4180.9007 6058.953 2833.1006 6738.312 15621947 amyA Carbon Cycling Carbon degradation Starch Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 2559.4915 2856.908 4701.9456 9089.4911 4018.2656 5302.5378 7944.0796 3976.9574 3976.9574 3261.9707 6141.7209 6525.689 4899.9776 6294.1708 2687.1197 2607.9473 13954.8813 12378.0642 6731.312 7303.2828 2487.4556 4228.4898 5001.728 2921.0071 6274.0056 347754104 terc Metal Homeostasis Tellurium Detoxification Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 2542.3006 148236.3517 7171.379 7171.379 4621.8097 5874.4669 33946355 actin_amoebozoa Other Phylogenetic NA Pelomyxa palustris superkingdom:Eukaryota;family:Pelomyxidae;genus:Pelomyxa; 2405.0357 3480.192 4296.3057 3347.5686 3867.0615 6764.9748 4298.1426 8218.015 2156.9372 6640.509 3533.2493 1920.9625 2532.5462 5246.5131 126105501 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2662.0618 5111.5205 378597131 ppx Phosphorus Polyphosphate degradation NA Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 3610.4068 4788.9368 2338.2808 57773.7579 4566.7643 2323.4863 2323.4863 11770.0213 8272.8027 4290.399 2360.1503 3820.0137 4717.639 5941.5068 1899.5196 3669.0002 2586.8716 31338100 rd Organic Remediation Chlorinated solvents NA Dehalobacter restrictus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 2042.1075 2870.4866 12719.9508 18981.8194 6608.2282 6258.8635 19751.8905 7483.0894 8993.6377 2227.2989 4294.3211 5823.0945 2724.2655 3737.4241 3596.0733 101303.5177 332879864 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 3672.4588 310870143 amyA Carbon Cycling Carbon degradation Starch Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 2580.2765 2798.8092 117949580 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 23993.9022 2394.8502 7593.2678 6769.2123 4519.7541 4305.8326 6132.5883 6132.5883 3167.3379 20426.8159 4363.8187 8728.7641 2708.1084 10016.2818 6498.4587 2803.04 39323.6418 7937.235 3077.8843 6001.6879 3908.1825 6331.0482 183601548 pula Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 6062.6627 6511.1343 3851.6827 16418.5007 7317.4407 22367.8584 5982.0462 5226.9909 9236.4204 9236.4204 16541.3925 12469.7262 2779.275 4397.1314 6288.48 5477.6847 11563.3107 4043.9007 11766.5136 11202.9046 3107.4824 4105.0784 28542601 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2508.0073 3965.8805 62106.1868 4541.2972 4482.3546 3128.3777 3128.3777 7209.8976 6173.3987 2878.9473 6518.0053 9871.9723 4685.5254 6685.8838 2206.7939 328844097 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 4579.092 2497.8584 3387.7971 61651.502 4220.9287 4709.9712 2839.3355 2839.3355 3305.5511 5203.9019 187341.3599 4994.0618 4091.136 8105.0701 9449.2182 5322.6863 5516.5095 2865.6642 3991.734 3998.2761 51534863 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2376.6476 2501.4192 124495024 phenol_oxidase Carbon Cycling Carbon degradation Lignin Polyporus brumalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 2480.0982 6010.7259 383106456 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 4737.5356 8237.2433 8696.7396 5212.9532 2573.9565 8946.7352 5109.0125 5992.6949 2693.3188 2711.291 5662.2795 2929.8977 3356.3135 259480340 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2191.105 87537.7134 388473173 b_lactamase Virulence Antibiotic resistance Degradation Bacillus atrophaeus C89 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 2324.0616 3356.8925 20345.5883 135913.3758 5315.0671 4844.6476 5860.8609 3303.8004 8540.4651 5660.2531 12165.914 14291.5951 7805.6101 3998.2019 2696.3984 2991.7117 10425.8319 6280.7135 2292.5581 4223.9733 3615.5089 4996.0484 8969.1444 167463448 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 4467.1617 7426.6036 2599.6635 6437.085 64774.7306 2785.4045 209552099 ara Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3960.7412 5368.3845 225680451 amyA Carbon Cycling Carbon degradation Starch Paracoccidioides brasiliensis Pb03 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 2754.229 7168.9088 34483167 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 2360.9987 10970.9715 5976.3148 13422.2253 91260.5677 5794.5913 1741.8604 5424.6663 2848.4456 260066453 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. LC6B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6473.2392 6662.0226 6300.9965 5147.9565 3400.5353 12964.0316 12964.0316 2871.7088 6056.2803 11659.6225 5114.9268 7072.4189 3663.1636 2929.9858 6779.9905 4571.7308 10864.3183 9107.3835 16764.9514 8041.3702 5767.7703 2293.2151 27657346 tfdb Organic Remediation Aromatics Chlorinated aromatics Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aquamicrobium; 5587.3836 4827.9447 6673.3505 3460.8558 9074.6437 12548.1158 8746.6427 3236.5423 3128.618 3347.5364 9140.8587 5305.9071 5513.5456 82895.767 6241.425 331001837 pula Carbon Cycling Carbon degradation Starch Lachnospiraceae oral taxon 107 str. F0167 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 16403.3341 85823695 one_ring_12diox Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3437.7173 4522.9827 3855.1732 3937.5501 12721.5152 3610.3422 4362.2796 2640.4165 3249.3942 4389.5628 1626.4983 2487.8435 5178.7946 330720013 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3494.7157 2441.7553 10539.41 158338481 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 2935.8576 8753.3759 6587.9154 31592.4836 357554331 amyA Carbon Cycling Carbon degradation Starch Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 2280.1608 4549.714 4414.3042 7586.6737 5597.6712 8281.5112 302408531 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 2352.0009 2531.4169 2369.133 69549.3085 6376.6403 4207.9954 5643.8596 10762.3812 5471.5283 7222.4043 2405.4869 4471.3662 3793.648 2667.3922 5109.7 219858515 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 2866.7488 3338.2033 4671.025 6414.8467 6871.3433 3098.7473 3098.7473 3349.0855 5084.152 6266.1906 3635.2291 8296.804 6330.3859 2431.3627 4425.9681 3577.3583 7591.8057 83972390 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 3291.3863 6031.6605 5799.829 10463.5762 56182.5675 26180.9453 2556.548 2556.548 8673.6604 13588.6432 5323.8229 2482.7461 13925.7459 4621.7323 29883.0863 8967.7017 3495.6654 11176.5104 15288.788 388246029 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 2398.2954 7755.7189 4326.8597 269130513 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 22283.7133 3795.5991 5394.9814 9694.8787 4767.2808 12167.4944 110648681 alkh Organic Remediation Other Hydrocarbons NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 5308.604 355575818 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Olsenella sp. oral taxon 809 str. F0356 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 6075.8404 128916.1022 7160.5586 27308.9585 11379.0788 11379.0788 380683424 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 2473.1308 56567.1574 4979.4868 3278.7967 1832.5368 153798481 terc Metal Homeostasis Tellurium Detoxification Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 4172.3414 5604.9975 258513748 nifh Nitrogen Nitrogen fixation NA Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 8525.3669 7827.8849 260838111 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 20918.7226 85082547 phenol_oxidase Carbon Cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 2569.1668 3033.4818 3033.4818 1595.9644 238020388 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Kingella oralis ATCC 51147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella oralis; 4950.6615 12301.927 101260.6232 9919.3289 4491.4461 4491.4461 7724.7379 4788.3643 9048.2602 14725.1371 3670.7431 4184.1164 21726.5679 4302.1205 322832784 alginase Carbon Cycling Carbon degradation Alginate Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 4872.2893 5155.9363 26461.9969 12596.496 5930.968 363719.9326 3906.2684 18321.1949 12252.3522 12252.3522 8717.193 8674.1349 15233.2253 7464.1799 3997.6162 7321.6652 8249.2903 17425.6142 3620.3592 33145.3866 6420.3013 10871.5866 6352.3419 7924.3774 5414.7824 4919.75 25013.0676 209523428 Sir Sulfur sulfite reduction NA Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 6730.9509 50921.7773 323319521 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2638.5854 3469.7196 13667.9609 30201.325 13480.793 4225.7352 7224.6141 5697.4754 5697.4754 6812.009 3713.4156 13075.4038 42184.2778 3647.8374 6205.3249 23414.5462 13423.1745 9061.5612 7174.9078 4744.5864 5936.3109 3916.3174 223886507 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2518.1323 4979.0365 5968.9586 7571.0157 2860.2489 20582.7381 7951.3251 5479.9696 7750.5841 2173.8656 3107.7272 3923.8513 146421997 protease_serine_fungi Carbon Cycling Carbon degradation protein Meyerozyma guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 6981.8902 254675540 amyA Carbon Cycling Carbon degradation Starch Arthrobacter sp. A3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2266.2392 2373.1764 5220.0087 3228.6372 2166.8708 1732.8467 380683541 nifh Nitrogen Nitrogen fixation NA Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 12284.0612 5312.0171 2597.2258 3328.0512 3922.6515 7386.4158 4092.2995 5888.7204 2916.5394 9535.1968 3736.7342 2958.3254 227351225 ppx Phosphorus Polyphosphate degradation NA Lactobacillus vaginalis ATCC 49540 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus vaginalis; 2598.1996 3189.3602 3189.3602 344924032 b_lactamase Virulence Antibiotic resistance Degradation Candidatus Odyssella thessalonicensis L13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rickettsiales;genus:Candidatus Odyssella;species:Candidatus Odyssella thessalonicensis; 52486.3761 68515834 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 19795.0244 325914835 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 3302.5366 2609.0826 25116.6927 10674.3034 10674.3034 8601.336 6534.375 4243.4304 2489.0065 124555.4511 2273.1828 357039599 ben_bcla virulence NA NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 1988.5619 7648.8977 6206.4356 2975.6103 22702.7372 7999.7833 14179.8869 260861503 amyA Carbon Cycling Carbon degradation Starch Selenomonas sputigena ATCC 35185 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sputigena; 3609.0257 4058.5167 2596.291 8814.4116 9436.566 2666.1276 2621.7305 87285063 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 3830.5646 3406.0808 7142.2159 122392.4808 4260.1135 13462.4944 117092.9508 12481.1045 8010.226 5615.6014 2807.002 5138.0576 6812.8446 2955.6605 16030.5322 8297.0156 8249.7627 2870.5453 6118.4721 5745.889 3553.7621 5685.489 46519991 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2705.3294 29394.4559 245514.6605 4591.3352 8257.5335 2272.1426 2272.1426 5764.4546 5479.9777 10193.2547 5671.8753 3899.5624 2551.0253 2645.6524 3687.6388 5655.4643 3027.2069 115387921 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 36140.1123 3459.5303 25397.035 25397.035 25990800 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4296.7208 4328.8107 4175.512 5004.404 5004.404 5767.4006 61308.2395 8284.1533 1908.7141 3276.9011 115437930 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 2988.5224 2628.4712 27084.5912 188211.5673 1862.8099 1862.8099 20416.6004 213536669 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 155012.0816 5272.475 8293.5955 7807.6204 4183.8952 11495.2632 143464.6718 256375977 pme Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 2710.1932 3406.5263 4332.4721 27269.6897 8477.6583 8477.6583 5898.618 3796.6564 9281.1056 8020.1351 10490.2617 9538.5913 5652.6418 5239.6467 2137.2811 14504.69 4710.6458 112462609 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2606.6935 5961.6137 3928.5389 3011.6076 383463026 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora xinjiangensis XJ-54 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora xinjiangensis; 4809.6055 4039.1288 12512.7173 2172.2108 12022.9003 10365.4862 7739.4812 2269.8337 2711.7348 4021.0969 341821022 terc Metal Homeostasis Tellurium Detoxification Weissella thailandensis fsh4-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella thailandensis; 2821.1466 3867.8606 8867.8132 4562.9708 1714.2767 3728.8513 75993809 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11436.5668 302410083 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 2306.7081 2723.8923 63447.9475 5740.7217 3638.5547 4251.3313 3704.234 7156.3241 4287.8536 2751.2649 254271807 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 5775.4272 2946.0653 4333.7249 5379.945 8432.3552 8949.0497 5450.3479 5380.3165 7369.2985 12439.7672 13759.0665 5150.0794 3269.2678 11824.1903 3052.4818 3041.567 226098161 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 31476.6909 1801.9537 2688.9327 302340639 bphF1 Organic Remediation Aromatics Polycyclic aromatics Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 2986.1649 6453.3136 20092.8856 37932237 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 4207.5079 3884.6009 2198.2354 2198.2354 7071.3671 4923.8176 5781.974 2652.4512 3824.7261 9229.4752 7830.6036 333983984 soxY Sulfur Sulfur Oxidation NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 2612.9049 4416.0666 2661.1876 6853.2875 4827.0492 4827.0492 47394.3587 1165391.1153 189893.5407 5185.6509 5871.176 4638.9226 3891.5474 384919954 amyA Carbon Cycling Carbon degradation Starch Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 2967.7903 2386.3749 2386.3749 4179.8265 7604.8926 2584.7149 13631.2218 254486366 pgk Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2349.4621 2672.6165 4214.1335 5995.3751 5995.3751 3490.0499 13859.2749 4521.1688 4317.9615 5274.3252 5656.7656 3859.9971 5346.4088 2029.3769 95135160 tehb Metal Homeostasis Tellurium Detoxification Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 2491.0635 319757073 ppx Phosphorus Polyphosphate degradation NA Deinococcus maricopensis DSM 21211 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus maricopensis; 2786.5705 82401.4453 21628.3102 21628.3102 4747.9062 10214.5871 5065.9967 7113.8104 6441.2759 147886216 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3110.8876 6117.4797 2445.948 1761.6913 119673097 dsra Sulfur sulfite reduction NA Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 2356.5799 70559.2274 4673.3623 10980.1042 3643.3571 5365.905 7331.5928 6556.1905 5690.6364 2941.8362 5938.3942 271964557 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 2269.5079 64415.8758 20607.8455 7538.7603 4206.4031 4206.4031 9705.5875 6509.3366 10464.2375 2434.3015 6313.4902 27125547 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5221.1003 21661.6293 4560.2835 3043.0859 5672.6126 8652.6323 4493.6576 7902.4082 19203.4841 2566.7953 6065.9983 17769.794 5085.1175 2345.2578 4529.2432 4290.1798 2557.4927 86556084 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2970.8319 3571.5691 3072.304 4152.8838 4314.48 5332.8579 5171.9213 2364.1 154310969 amyA Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 3289.4426 3198.4377 7846.1128 4202.2779 35885.1864 18045.0312 2948.331 2412.6984 5017.7881 10953.9782 94424450 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2252.913 3557.1251 4930.9474 2740.4806 5127.148 4240.8857 21292.2885 6051.6176 2518.9591 5772.8394 5978.7165 3701.5069 3919.2848 15852.5937 395337379 arylest Organic Remediation Aromatics Other aromatics Pseudomonas sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2531.6875 20062.3346 2143.5592 1572591 nifh Nitrogen Nitrogen fixation NA Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 17269.52 3696.1107 4192.6869 2886.6722 3654.4827 7375.6855 4150.4381 3366.1811 5202.431 4664.0636 2535.7268 5896.5636 5470.9854 2318.0243 226092967 nitro Organic Remediation Others NA Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 16321.5558 3405.5236 4114.5903 5125.9552 10768.4912 374665636 mer Metal Homeostasis Mercury Detoxification Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 2586.6635 4808.4077 6404.3338 52397.8543 52397.8543 7559.1356 9891.8754 2641.2028 255263695 urec Nitrogen Ammonification NA Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 3480.5074 7977.5873 6064.2224 6064.2224 6597.5294 6191.0897 4765.6925 3084.1937 5204.7135 3016.2463 10376.9285 295663619 cpnb Organic Remediation Other Hydrocarbons NA Paracoccidioides sp. 'lutzii' Pb01 NA 3739.1544 2136.5315 2136.5315 3230.1414 336282711 mer Metal Homeostasis Mercury Detoxification Idiomarina sp. A28L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina; 4400.7007 2121.118 5505.6075 13292.1177 120345.007 11094.1316 3742.1342 7474.3465 2452.2607 2096.511 4590.7528 4150.8997 2027.7984 284506634 Rubisco_Viridiplantae Carbon Cycling Carbon fixation Calvin cycle Mesotaenium braunii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Streptophyta;class:Zygnemophyceae;order:Zygnematales;family:Mesotaeniaceae;genus:Mesotaenium; 2676.6449 90435338 terc Metal Homeostasis Tellurium Detoxification Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6541.8657 2832.6246 331183.96 4727.6308 3666.4606 3666.4606 38304197 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5614.9229 4638.3345 4307.0537 21879.3022 307565988 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella amnii CRIS 21A-A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella amnii; 2640.9203 5652.3702 5731.9765 255291896 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 4164.6622 3672.1494 6108.2478 146405649 urec Nitrogen Ammonification NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3395.2171 238790089 cellobiase Carbon Cycling Carbon degradation Cellulose Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 3908.1084 297583373 amyA Carbon Cycling Carbon degradation Starch Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 5040.7033 43929.4604 333735728 amyA Carbon Cycling Carbon degradation Starch Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 2074.6651 15999.5667 25374.9103 4830.814 116203865 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 4807.4948 6646.5509 10285.3665 21977.6655 2615.9729 5256.9386 6405.7565 2613.1812 71195.4196 298247196 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 6761.7054 80484.7314 5869.1928 5950.2468 4896.4404 19952.6516 5780.7562 2356.4389 345012078 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 2109.4184 5778.2715 11622.4438 4168.3748 5467.0359 5467.0359 6496.1131 2879.7131 5019.3874 3332.7375 167957581 amyA Carbon Cycling Carbon degradation Starch candidate division TM7 single-cell isolate TM7c superkingdom:Bacteria;phylum:Candidatus Saccharibacteria; 133624.8537 3619.1341 2471.5145 121453.0749 4288.3978 13618.6293 256393151 ophc Organic Remediation Aromatics Aromatic carboxylic acid Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 6089.7443 3438.7852 8220.4202 9283.7503 3922.6766 2166.5673 2166.5673 4396.7963 113959.3312 8632.3239 4468.1513 2917.4205 3347.4029 330958480 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 2352.3158 8826.7769 5092.5273 7055.4115 302525666 bphc Organic Remediation Aromatics Polycyclic aromatics Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 1848.4556 5933.259 169293 mnp Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 4028.5752 4413.9167 332180146 mer Metal Homeostasis Mercury Detoxification Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 3291.1348 2131.0386 3129.9313 9866.1809 40687.2561 14975.236 14975.236 5756.6874 13495.0882 3785.5548 304406854 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 41301.7812 8650.9362 6700.841 6700.841 278478.2808 3407.7048 37059.3322 304405535 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 2529.7673 2254.6632 6029.6618 5685.7066 5372.0128 3226.7141 256423272 tehb Metal Homeostasis Tellurium Detoxification Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 2954.2695 9245.9207 9245.9207 386393706 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio sp. U5L superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 3287.9709 3671.505 5533.5796 3774.2265 14511.6526 2444.6874 238582192 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 2564.4509 374388340 amyA Carbon Cycling Carbon degradation Starch Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 3962.3576 7541.6643 158464.3082 3693.7579 7027.9601 1977.4967 1977.4967 7073.4536 4162.1453 19471.597 13335.9401 5271.862 2155.6762 9887.9816 3638.1458 4438.5836 6504.8111 227199673 narg Nitrogen Denitrification NA Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 2749.6437 124271119 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3023.9185 4305.5938 7358.2207 7611.0103 3617.6924 301067668 amyA Carbon Cycling Carbon degradation Starch Lactobacillus casei str. Zhang superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 3392.0017 4833.2373 4479.0334 8471.781 3586.7558 4845.3843 1869.0553 2791.9638 2249.3146 288928068 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 317 str. F0108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 317; 2484.6873 356608241 pcpe Organic Remediation Herbicides related compound NA Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 4776.7036 343502207 nosz Nitrogen Denitrification NA Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 2707.7709 2495.6519 5163.5462 2514.9624 2514.9624 5330.4014 10434.1243 10040.5066 21685293 pel_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6074.0998 2464.6167 116222548 cmci Organic Remediation Aromatics Other aromatics Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 17772.4293 2752.7197 6810.2659 4366.3402 2886.7722 2886.7722 5695.0963 4858.8806 4881.135 8174.4837 4908.2181 6791.2994 2407.7669 10206.4178 4573.0701 33640414 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 2992.6861 2447.7297 5412.0274 3432.7257 69836.8282 4391.0322 6820.9245 10235.9254 8573.1493 13899.9945 4635.9335 7453.4245 2038.3779 6512.5227 3869.6452 7805.7268 319414010 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 2290.398 2494.1033 2824.5561 192810313 arsc Metal Homeostasis Arsenic Detoxification Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 24758.3569 4190.2679 65862.1186 6073.8533 6073.8533 6894.7419 3631.8814 2734.8184 16714.5968 29652472 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4622.956 22028.6215 7867.2358 4187.2878 2838.6083 2612.7133 2919.6108 5720.1764 302554967 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 3285.1319 2577.2126 1966.5734 1966.5734 3683.3821 2825.4458 4033.6983 1770.7403 46307886 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3823.3327 6307.4854 3784.6 3784.6 6015.9028 4745.291 2314.3631 5999.5595 4628.1821 188572643 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 57366.5403 9276.2654 3361.8475 77111.1326 4438.9618 23403.0926 17860.0551 7609.9893 6164.7644 10083.5998 2733.9983 7829.6561 9103.4388 52296.2054 12054.3048 13169.4282 8157.5488 4122.8997 3575.23 10444.7487 7123.6224 10023.0718 238596433 cellobiase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 24693.5178 10258.5111 7317.6592 87280980 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5260.0692 6662.9524 11499.5369 2309.6849 325168945 arsc Metal Homeostasis Arsenic Detoxification Acidiphilium multivorum AIU301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium multivorum; 3641.0249 6342.0003 14841.026 335881011 tktA Carbon Cycling Carbon fixation Calvin cycle Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 2061.3031 49333363 exoglucanase Carbon Cycling Carbon degradation Cellulose Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 3312.5331 3014.1376 3339.2779 22834.3907 3493.1451 3493.1451 5717.5858 11099.3097 9874.3905 6573.5044 5456.6511 2748.3665 5546.3091 8082.8373 3334.1087 11077.1553 5596.3287 8769.0486 3922.8678 5069.9622 2229.0255 53850902 dsrB Sulfur sulfite reduction NA anaerobic bacterium EtOH8 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae; 4403.8569 4025.6585 197623761 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aciduliprofundum boonei T469 superkingdom:Archaea;phylum:Euryarchaeota;genus:Aciduliprofundum;species:Aciduliprofundum boonei; 10751.8965 2711.5134 5150.7491 5063.7961 37429.6787 4618.3292 3785.4769 2291.1652 7437.0889 3268.1362 3213.3278 124107956 nifh Nitrogen Nitrogen fixation NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 51181.6254 3604.0006 80187.8908 7999.9931 407646237 ben_bcla virulence NA NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 11180.9398 229321226 cysJ Sulfur Reduction NA Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 14973.275 5415.3986 6207.8622 178905.4534 6844.0956 5297.7646 2818.8681 2818.8681 10402.2735 6491.0784 7815.6978 9261.4311 3699.0038 6003.9082 12519.8041 6657.5933 37472.5194 12057.7306 9713.9067 13809.8206 5174.2877 10800.4154 380768869 mannanase Carbon Cycling Carbon degradation Hemicellulose Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 9170.5422 6021.5987 12017.0923 12017.0923 20173.3602 46307880 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2442.3569 258577163 pcpe Organic Remediation Herbicides related compound NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 2387.3952 9252.9574 18135.2937 8714.3564 14564.7222 8596.5144 334823.5345 77361.2732 6284.4826 2910.7467 21163.9994 22077.0544 355672893 alginase Carbon Cycling Carbon degradation Alginate Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 3449.8673 3745.41 9356.5543 2936.975 10840.8925 5155.4734 4085.0433 8638.0703 6252.6605 9631.4586 3751.3617 1889.703 4765.1981 2217.7952 4878.5109 389775230 alkb Organic Remediation Other Hydrocarbons NA Rhodanobacter spathiphylli B39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter spathiphylli; 47400.2765 9041.2319 5687.8323 18175.4483 18175.4483 8841.781 7646.2488 2939.4655 2743.2157 4971.7226 17977.6964 2153.9423 10612.67 4779.0562 69935845 tehb Metal Homeostasis Tellurium Detoxification Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 4057.1297 82926.5016 3640.0027 6441.8112 4300.546 6686.9903 6879.9036 9019.7453 3926.6026 7028.772 2049.6172 3112.4704 2972.5214 2168.8133 67156337 pcag Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 2405.1369 3499.4527 62390.8346 8507.9426 5121.8804 4040.8967 5549.7546 5937.9147 3283.9852 5580.1254 13338.1567 168335410 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 4679.2347 120595995 bphc Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 2943.3982 25530.6337 7110.7647 5054.2419 356690411 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2222.8362 4268.8919 2603.2578 2725.6721 4244.4251 5664.9331 2113.9425 4333.0476 2418.4904 122937809 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4867.604 3212.8766 6461.7416 4712.2014 1996.3649 2363.6479 164455712 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2530.3966 113529.8375 87809.4984 5084.8633 4193.0247 4193.0247 4558.6918 45013.8935 2955.4432 3696.4091 17945.7025 5239.8319 5608.4623 2663.0159 5242.2728 339480050 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium breve UCC2003 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 4669.3503 99617.8026 6163.6098 35040.1007 11367.915 11367.915 334696549 arsc Metal Homeostasis Arsenic Detoxification Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 7407.0016 343095485 rgh Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3725.5534 25812.1414 2343.9781 2343.9781 3880.9955 6337.4836 118759579 bphd Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 2454.5564 2637.2533 3599.8082 20793.3281 33087.616 378072.1715 4295.706 319893666 amyA Carbon Cycling Carbon degradation Starch Staphylococcus pseudintermedius HKU10-03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pseudintermedius; 2213.6806 3762.1496 5952.221 4290.9818 2173.5461 4527.5346 1819.6003 2435.9774 118000784 urec Nitrogen Ammonification NA Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 3470.2813 5616.7182 3022.0632 3022.0632 6186.1442 8283.4076 9442.7847 3159.6591 10865.2853 9873.6434 4396.9866 12087.4078 2085.8084 3297.1281 3549.7235 225194134 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5906.0569 5014.0319 6381.5138 4502.1294 4878.9624 4878.9624 3256.4154 3287.804 6476.0845 5685.8368 6066.1311 4984.9788 2170.2836 5686.102 373849339 cysI Sulfur Other NA Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 6274.7747 1981.5098 4362.2069 6172.4912 3679.6717 5209.6303 2240.5043 13929.0569 6768.8849 2653.3361 16609.7937 3433.6649 189499160 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 3574.5221 3943.1871 2175.3864 2175.3864 3901.2094 5525.965 2254.4885 7431.8796 5350.8134 2638.5181 3387.9772 3634.5433 2177.4328 159044817 FBPase Carbon Cycling Carbon fixation Calvin cycle Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 3949.95 12501.6928 3008.3313 9215.749 5650.3153 7803.569 4679.3776 5306.3947 8455.2153 8455.2153 6970.2879 11130.9368 4589.8703 10729.7473 6068.8502 15363.6874 3679.0818 2983.5209 7143.2472 11350.4933 7131.5543 5896.6458 3239.9482 4343.0493 19914.121 198255066 xyla Carbon Cycling Carbon degradation Hemicellulose Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 2188.7296 40898.079 225942.9088 22388.6317 192358825 TIM Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 2330.0906 2080.0096 5111.6372 86285628 xylanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium; 2326.412 3791.0157 4064.9451 6297.0594 3028.2135 3103.0885 4265.5003 408376666 pcag Organic Remediation Aromatics Other aromatics Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 3021.6131 2293.4452 4970.5523 3445.9373 2081.9865 6345.4817 5325.5227 8747.0135 332306388 linb Organic Remediation Pesticides related compound NA Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 2227.6606 3300.6484 371718776 amyA Carbon Cycling Carbon degradation Starch Caldithrix abyssi DSM 13497 superkingdom:Bacteria;genus:Caldithrix;species:Caldithrix abyssi; 2511.0262 8844.5421 334343332 badh Organic Remediation Aromatics Other aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 2544.686 6029.7306 13758.0365 189467305 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 2803.4552 4090.6249 2822.899 9103.5736 4045.6506 6377.618 2031.6586 16176.0612 3469.873 2655.3007 149191957 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 2020.3285 4829.6323 66254.4618 3985.4488 17520.2973 270155534 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax dieselolei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 2946.741 2835.5052 3676.3044 77568.6981 4043.9508 9723.8054 8570.8762 8268.3738 3731.3428 5087.8504 9413.5795 3562.7965 8251.6073 112463619 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2817.5633 5731.5547 3976.3044 2602.4214 306529620 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 11856.2016 2036.4968 3881.5785 3680.4382 2223.5699 4795.9904 2551.1292 189189404 pec_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 17763.1552 6799.551 388258531 cysI Sulfur Other NA Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 2445.0226 3803.2661 72880.2795 1936.2905 340247127 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 3751.9315 300654630 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhizobium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 2697.3811 54843.8366 5293.075 3762.767 5058.6636 5965.619 2389.0087 2930.2898 7943.3598 10979.729 3935.9958 5830.9527 2298.7866 3545.8611 386851445 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 5714.2876 3594.5617 7435.2495 9567.1109 118168207 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 2384.5334 218323709 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 11323.555 3959.0944 4961.6556 4961.6556 3507.6721 15110.3331 269129871 ppx Phosphorus Polyphosphate degradation NA Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 2792.9462 302413759 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 2953.9524 5252.6227 128804.9225 2901.0971 2901.0971 2501.0136 2178.1328 1796.7144 8967.9416 117346.7736 161384608 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 5816.0868 1698442 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2523.9045 29652418 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2162.1566 6417.7146 31629.5616 3597.729 83853183 TIM Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis sp. HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 5249.2226 2925.2246 2949.3047 40306.0676 2068.7502 11487.8922 4330.7444 151575350 arsc Metal Homeostasis Arsenic Detoxification Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 2480.2673 3689.9113 69337.7126 4616.7756 3145.4371 10483.6986 5506.0102 9245.1679 5153.4047 4907.6055 2738.3867 6916.1678 2394.3522 9285.4701 6663.2723 6910.6441 4101.2362 3502.3938 3838.2495 5290.6193 121307528 amyA Carbon Cycling Carbon degradation Starch Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 3443.9742 8829.291 6515.0412 3800.5103 2603.0934 205374717 terc Metal Homeostasis Tellurium Detoxification Bacillus coahuilensis m4-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coahuilensis; 2689.0145 5712.8686 6540589 fcba Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. DJ-12 superkingdom:Bacteria;phylum:Proteobacteria; 3662.5008 79569.6246 4203.9641 8440.5014 8899.4448 4024.6575 4806.669 4105.2336 72313.0703 2343.3062 398064496 phdk Organic Remediation Polycyclic aromatics NA Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8119.736 72132.8249 6068.4117 3189.1843 3189.1843 3759.6981 8835.7575 7642.9437 10601.0699 4916.5148 4487.6656 3700.8039 5845.7152 103488599 phytase Phosphorus Phytic acid hydrolysis NA Sphingopyxis alaskensis RB2256 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingopyxis;species:Sphingopyxis alaskensis; 2541.4432 10182.8674 4409.9292 4641.846 6984.6035 4172.066 6675.0961 3002.5446 328923072 amyA Carbon Cycling Carbon degradation Starch gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4623.0322 3209.864 5660.3304 4001.3806 3211.9307 219992370 aps_apra Sulfur adenylylsulfate reductase NA Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 7333.2685 2580.6367 34260.0544 4699.4962 4699.4962 1986.4671 8343.7222 8943.8962 237715361 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides sp. D1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 2544.5293 169780532 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 2989.9248 10879.3464 18047.9769 4089.577 4612.2188 4307.8767 2525.515 387889984 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 71477.4987 6885.7893 6885.7893 5191.3903 2640.4545 115391459 axe Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 8115.8016 4250.0418 4749.4844 3961.5764 6010.6643 8669.0322 37925029 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6612.2802 2879.196 3722.9158 6497.9235 5493.4186 10052.1684 2868.0709 3103.7726 7594.2991 5700.3504 9066.2914 4545.7008 7386.6078 2515.9487 3893.03 2362.2376 18159946 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 2538.6313 4050.8625 2061.0947 2061.0947 2770.5625 332297738 chitinase Carbon Cycling Carbon degradation Chitin Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 3125.6316 68073.3902 7208.7994 7576.2991 407276442 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2350.002 3921.4171 70532.6328 4976.4842 2142.8246 2142.8246 2916.2758 3755.3278 4394.4925 6713.0505 4965.1646 3807.4434 2973.1621 3758887 nirs Nitrogen Denitrification NA Roseobacter denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2223.7715 37492.0263 62131478 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 3446.5824 3844.3363 68249.1066 3969.0466 2991.0042 4628.9399 2938.6414 23422.0885 11340.3029 169793358 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2540.7386 6483.3544 6410.884 5066.205 47444.5884 3453.3695 3453.3695 5896.9499 3224.5999 6316.4363 2064.5333 22086.3408 15483.3071 2058.5326 2908.8069 9370.6049 2912.0206 2414562 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium leprae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 2988.3252 7073.829 3087.7077 8796.386 2559.7456 2559.7456 6824.514 16001.9298 289171473 chitinase Carbon Cycling Carbon degradation Chitin Listeria seeligeri serovar 1/2b str. SLCC3954 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria seeligeri; 4035.8712 3348.3234 12676.2359 4778.0331 109290302 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3388.7016 4888.6477 7964.7245 3697.5155 17890.8586 251795804 Sir Sulfur sulfite reduction NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11222.1948 297143837 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 5682.5873 2058.177 25854.3129 13986.8542 18968.6833 2017.4072 2017.4072 4819.4742 7181.0377 4518.4968 5230.0326 7570.2978 4922.9847 4994.8608 14848.4633 2016.221 11955.3585 4592.504 3928.0248 45473.9483 112799404 mer Metal Homeostasis Mercury Detoxification uncultured euryarchaeote ARMAN-2 superkingdom:Archaea;phylum:Euryarchaeota;genus:Candidatus Micrarchaeum;species:Candidatus Micrarchaeum acidiphilum; 5308.0502 13710.1019 4786.3335 4786.3335 247694.9544 29225.5777 8510.1115 26461.6746 15835.5085 377540759 dsra Sulfur sulfite reduction NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 7769.0728 2209.0186 3346.9659 7430.2557 2714.9718 2714.9718 38421.1605 60391.2305 8078.2254 4942.717 5514.9434 9632.7167 5440.6642 2341.1306 4686.6032 118762397 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 4611.7954 7186.2542 13579.244 43746.7359 7656.3635 3926.6922 333936748 ara Carbon Cycling Carbon degradation Hemicellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 19592.4561 3187.8848 4439.9202 3225.0466 4017.3815 68562916 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 2352.7491 4826.7185 3904.7311 2276.5791 331007767 phn Organic Remediation Herbicides related compound NA gamma proteobacterium IMCC1989 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 6458.5591 333383929 xyla Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 8482.6388 9026.3643 4026.2578 5808.5801 3579.09 258576725 sdsa Organic Remediation Others NA Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 2201.5465 55380.5237 4240.7271 6328.4415 3690.8453 4959.0185 5331.393 17141.8451 10001.6334 4608.3857 1792.7431 3168.1732 99030640 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 3045.4342 4113.7439 2060.4727 2269.0001 421953050 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6212.908 261857025 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3405.5745 133778522 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4307.2904 5394.9664 6486.3022 2033.1181 2033.1181 4096.0633 22291.2511 39481.8511 49564.7847 2792.9011 333488129 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 99376.0902 85572.5972 8066.0289 322835348 tehb Metal Homeostasis Tellurium Detoxification Rahnella sp. Y9602 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella; 66610.1309 85789.4406 3300.7358 82835.9277 9893.523 3373.2861 163746722 SoxV Sulfur Sulfur Oxidation NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 8628.472 37496867 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2683.5784 3571.496 126727410 SoxB Sulfur Sulfur Oxidation NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 2367.6788 2086.499 3179.2476 3983.3456 154868.6911 4651.2805 138174.3712 138174.3712 3569.6664 3981.4554 5630.6693 1707.0083 4520.0223 218548065 ppx Phosphorus Polyphosphate degradation NA Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 5967.2448 4540.9969 30736.084 319915743 arsc Metal Homeostasis Arsenic Detoxification mine drainage metagenome 203204.35 88539.1894 3398.6487 4325.8907 94424684 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. SKA58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2490.3442 2160.9007 2975.5524 4119.9906 5216.9797 3460.5095 2884.771 13183747 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9544.9874 7096.1619 5907.1899 8417.9477 2567.1084 2567.1084 343765410 arsc Metal Homeostasis Arsenic Detoxification Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 2156.7356 6217.76 4975.8579 12538.9859 12538.9859 7145.4435 8633.9986 147886074 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 2280.3545 87173.1715 3583.0969 340027051 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 12519.479 2646.0569 13666.9978 7139.9602 37211.6072 336295956 terc Metal Homeostasis Tellurium Detoxification Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8744.8912 2780.3093 2780.3093 164455532 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6211.3679 6567.4843 5394.9271 51869940 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2473.1913 2857.7481 59328.7911 2483.0766 2483.0766 5652.7675 2147.8061 4881.8778 4863.9258 2693.8286 74421044 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 3497.7836 6141.023 4423.2431 5154.3548 59658.8222 59658.8222 18260.822 10172.1342 11496.4934 2504.8063 5349.7012 3648.0065 342316490 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10755.0308 8960.1689 4388.1906 6062.6175 3849.9685 133559.0745 3317.8009 4586.7777 13021.5181 3644.2864 3644.2864 9625.231 10633.7872 4607.5288 41814.2178 5818.744 8748.4388 3459.0663 3503.4136 2672.55 18493.3563 13768.3128 3076.4617 5917.761 3782.9962 3215.9352 7884.2507 2511562 GAPDH_Parabasalia Other Phylogenetic NA Monocercomonas sp. superkingdom:Eukaryota;order:Tritrichomonadida;family:Monocercomonadidae;genus:Monocercomonas; 2585.5967 319782309 vana Carbon Cycling Carbon degradation Vanillin/Lignin Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 2464.9759 334118845 terc Metal Homeostasis Tellurium Detoxification Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 33109.1949 5846.0576 270345153 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 3363.3718 294340651 sqr Sulfur Sulfide Oxidation NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 3050.9701 7962.0183 8250.2386 5601.5929 4891.6072 18564.3925 18564.3925 9166.9367 5936.3385 5310.3586 6956.934 4207.0526 5998.6979 3741.7399 359310194 bphF1 Organic Remediation Aromatics Polycyclic aromatics Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 2613.7172 2418.064 3006.4046 4327.1105 3701.3639 3778.0998 4500.0221 2809.7837 6433.8602 2726.1186 2616.7084 4352.907 3148.4876 3489.8121 145319048 amyA Carbon Cycling Carbon degradation Starch Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 2832.1345 4678.9366 70732700 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3570.5264 329758493 atzd Organic Remediation Herbicides related compound NA Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 15046.5667 112253.6176 6000.1077 187977501 ppx Phosphorus Polyphosphate degradation NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 45992.0589 6121.7656 2252.6846 26278922 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2227.0944 7986.1246 288893593 arsc Metal Homeostasis Arsenic Detoxification Ferroglobus placidus DSM 10642 superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Ferroglobus;species:Ferroglobus placidus; 7390.4276 385886242 arsc Metal Homeostasis Arsenic Detoxification Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 4771.0435 13763.1686 4953.4345 7392.5491 17977.2553 118470813 scnabc Organic Remediation Others NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 2639.2942 3653.2364 522937.6127 3534.38325 7416.4387 3513.5359 5331.3496 2238.7107 2896.738 170078409 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 38416.3385 13174.1799 7967.0013 68952.772 5124.9303 5588.507 7162.326 383754948 nrfa Nitrogen Dissimilatory N reduction NA Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 2518.011 3179.4952 49523994 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptococcus suis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 10650.3877 229793179 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 2580.151 5911.7138 4913.0731 151302266 aps_apra Sulfur adenylylsulfate reductase NA Desulforegula conservatrix superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulforegula; 1976.4539 3905.6332 346992264 nhh Organic Remediation Aromatics Nitoaromatics Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 3113.5382 11739.4943 6450.7109 36783593 pcpe Organic Remediation Herbicides related compound NA Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 5648.0594 3322.5098 6290.6852 6290.6852 4932.2377 5834.4069 13674.2318 3275.6081 4055.426 325073053 nitrate_reductase Nitrogen N Assimilation NA uncultured stramenopile superkingdom:Eukaryota; 2201.688 4460.3954 3040.1883 3502.0301 4094.6873 6692.9891 7530.3094 3037.4261 7858.7776 2153.0986 3932.9471 4818.8603 385817265 amyA Carbon Cycling Carbon degradation Starch Lactobacillus amylovorus GRL1118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylovorus; 92948.5476 11036960 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinus sajor-caju superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 4280.7811 2765.4031 5405.8691 4370.4869 131323.8364 6869.6545 7348.985 9799.7696 4638.3552 4638.3552 3720.756 10943.3191 5261.2289 4830.1114 2967.444 9403.463 17893.4878 5686.0276 23343.1658 8543.2111 30239.9242 2314.5678 26616.9687 12529.4308 328452412 nifh Nitrogen Nitrogen fixation NA Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 4787.2497 4094.2849 3389.6934 3750.3273 15116.3257 4585.3187 323472959 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2210.2041 6547.8079 5503.6533 89205.138 2559.7256 116006.4109 4170.7653 6071.7371 6071.7371 6140.1989 5349.8951 3020.1072 4451.6497 3457.7173 6305.8689 4878.4386 2875.3293 119473537 lactase_fungi Carbon Cycling Carbon degradation Lactose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 3153.7367 10326.8611 6930.6276 378803720 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium intracellulare MOTT-02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 3520.8367 10034.6573 2784.4548 2405.2006 2405.2006 16764.6411 5242.5423 4144.8118 3466.5683 7612.9066 3000.098 254467149 arsc Metal Homeostasis Arsenic Detoxification Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 3267.9698 338212416 xyla Carbon Cycling Carbon degradation Hemicellulose Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 2254.9116 2288.7088 4275.4231 4275.4231 4853.9938 7878.176 2335.0721 3680.9463 2414.895 2974.0905 3140.1573 2714.5516 1054936 ara Carbon Cycling Carbon degradation Hemicellulose Trichoderma koningii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 3763.476 5439.1697 5795.6448 5795.6448 4635.2312 366163785 endoglucanase Carbon Cycling Carbon degradation Cellulose Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 2464.8373 2505.9411 2505.9411 6425.0825 35378.5123 4041.1224 4210.4648 226320122 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 33209.6194 4663.0323 58512.9042 14703.8453 9113.7469 4262.2358 4262.2358 12472.8985 3102.6881 6206.7205 9701.9637 3501.6642 2025.748 7530.7449 5503.8128 2193.2576 6520.3316 5062.6867 2142.0865 19542.0453 164605314 hzo Nitrogen Anammox NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae; 2521.8274 79617.194 2258313 mmox Carbon Cycling Methane Methane oxidation uncultured peat bog bacterium 24 superkingdom:Bacteria; 21119.7886 18053.5512 85847.2597 21673108 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 3027.2775 7098.5197 2821.9475 3572.6936 61333.2632 9484.334 4855.4055 4790.2712 3687.5179 2209.3528 4897.6136 8717.9648 3444.5499 5859.6692 2511.8167 4134.1661 3643.936 2048.1615 171914160 nira Nitrogen Assimilatory N reduction NA Verrucomicrobium spinosum DSM 4136 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Verrucomicrobium;species:Verrucomicrobium spinosum; 5275.3618 4509.6639 3883.1498 520404.8923 5471.3416 2749.2197 2749.2197 7345.8194 5066.6648 4290.5017 185295.1189 3975.0959 8187.0045 3661.0124 6784.1451 8180.3869 2548.3443 3516.1621 3403.7457 4902.5475 52004704 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis DSM 13 = ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 3015.0734 4065.1108 7687.7637 1990.9153 4407.1319 83942233 ppx Phosphorus Polyphosphate degradation NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 13556.8773 3873.8283 15054.7118 4315.2992 5989.7349 4508.1744 2603.0046 257873516 amyA Carbon Cycling Carbon degradation Starch Enterococcus casseliflavus EC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 4380.7054 344176257 vgb Virulence Antibiotic resistance Degradation Ralstonia syzygii R24 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 30743.8742 3105.7722 683670.2757 3386.1445 14204.6942 14204.6942 6057.2265 3600.0677 11389.7151 4194.825 2454.9056 2542.7876 28079.176 62512276 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2977.7568 86001.5678 10212.972 3759.5467 2923.8708 2923.8708 5367.0445 2372.9369 1597.6767 169804745 ppx Phosphorus Polyphosphate degradation NA Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 2566.0855 444097.5478 3701.932 4067.9378 7345.1566 1861.593 6425.2814 300721937 arylest Organic Remediation Aromatics Other aromatics Xenorhabdus nematophila ATCC 19061 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus nematophila; 6326.3586 2524.0996 4721.2462 6654.6768 5217.1771 344261730 ppx Phosphorus Polyphosphate degradation NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 5542.3927 388530103 arsc Metal Homeostasis Arsenic Detoxification Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 2751.1042 6068.0785 4897.4059 7568.8324 7639.323 7639.323 8311.6297 6225.6827 10677.0067 6624.3679 6882.4004 3341.487 4194.016 18873.8242 6334.576 2267.1725 6534.8792 9744.0307 5962.5785 347819390 pgk Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter aporrectodeae subsp. tuberculatae At4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter aporrectodeae; 2911.9189 13201.5331 3020.7521 3159.815 90932.8542 4173.1037 6947.6206 4015.7733 4015.7733 3123.8956 5663.171 4551.8292 5381.7747 10329.1799 2243.1666 5649.4961 2310.4751 10279.5678 5488.6254 6567.8073 3026.5427 5201.4564 4690.0195 5373.7205 6161.2419 89143264 fcbb Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FG1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 262345.1102 4739.824 6810.542 84981.4991 2428.6017 2428.6017 6764.141 5402.2829 2249.5495 27830.2459 5367.8777 1918.1468 62596.3246 5608.8591 5455.0774 219541163 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2244.0832 390522506 amyA Carbon Cycling Carbon degradation Starch Ornithobacterium rhinotracheale DSM 15997 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Ornithobacterium;species:Ornithobacterium rhinotracheale; 15949.3621 2864.7152 16551.8852 10873.1461 17767.6997 296140633 amyA Carbon Cycling Carbon degradation Starch Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 5045.3579 2387.8851 11196.2633 39688.0994 6511.8187 4802.3825 4978.3828 4978.3828 22616.3632 9179.5453 7049.9289 12662.7596 8600.8689 4194.2512 3173.2744 55978077 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4138.867 3787.5717 18695.4364 6250.0528 380735311 dehh109 Organic Remediation Chlorinated solvents NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5614.2949 206050.0256 2562.0203 366165203 pme Carbon Cycling Carbon degradation Pectin Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 2655.3337 65529.3602 5751.0928 3681.3995 6509.8437 1952.0537 3599.1253 355386985 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 3890.3304 3736.1182 6561.3449 254514049 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2464.2128 28387.9406 325264335 cda Carbon Cycling Carbon degradation Starch Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4132.2867 15080893 dsrB Sulfur sulfite reduction NA Desulfotomaculum thermoacetoxidans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 114301.2713 5787.5469 162145633 cox1_Viridiplantae Other Phylogenetic NA Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 4368.2681 95109363 cmci Organic Remediation Aromatics Other aromatics Pseudomonas superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae; 2335.8755 4542.9055 2276.3182 3638.7391 255945173 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 2460.7475 4489.3028 2194.4641 4295.3471 70996801 arsm Metal Homeostasis Arsenic Detoxification Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 4528.6947 7141.5777 11731.8639 6445.1226 2798.8861 157681335 pme Carbon Cycling Carbon degradation Pectin Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 2766.3384 3439.6649 150930.3952 4176.4075 3145.4889 3145.4889 4690.875 4865.8166 10481.8791 6387.9562 4261.673 3145.6929 6447.9482 2782.0661 9417.7447 5483.0146 2720.3475 4460.6021 5801.2506 2480.1444 10180.1832 357019283 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 2925.1471 2558.7633 62235.6863 23683.8647 2513.3599 9163.5946 255269456 ara Carbon Cycling Carbon degradation Hemicellulose Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Marvinbryantia formatexigens; 2220.99 5908.9945 4195.9265 30253.2901 3038.5324 2937.8121 5642.3539 3827.8695 6597.8069 341868979 arra Metal Homeostasis Arsenic Detoxification Geobacter uraniireducens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 2163.2245 83934.3465 37650.1017 3568.3431 3289.1672 2647.0015 1755.8477 2010.5783 298537452 amyA Carbon Cycling Carbon degradation Starch Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 35032.5154 13062.7067 2538.0417 4266.5466 219537021 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2991.6827 5570.5968 4636.0145 124520.5178 4973.7913 4117.9494 3690.7401 9200.4183 6480.8172 7980.2279 5616.2318 2517.3284 6529.9409 13242.3385 7203.0381 8701.4444 1878.1438 4797.483 2778.6668 7129.7504 89335660 dmsa Organic Remediation Others NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5244.8853 4461.2375 2661.1296 365792018 dsra Sulfur sulfite reduction NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 4027.6677 3136.3027 6932.5226 4693.163 4282.05 4943.0518 3793.7211 2916.9231 8613.4344 1778.6658 3172.8598 2461.8826 5100.6367 219939252 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3593.2544 4863.287 388245130 linb Organic Remediation Pesticides related compound NA Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 6883.7316 5443.3667 12258.5392 85524.961 10650.4681 2777.1583 2777.1583 7124.5472 3698.8375 365878583 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2385.8815 3898.8383 4865.0439 5928.1232 2605.1883 2605.1883 6708.1419 4473.2207 308046772 terc Metal Homeostasis Tellurium Detoxification Lactobacillus plantarum subsp. plantarum ST-III superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 6645.6747 5523.1358 3319.5009 3426.3003 5324.9913 344995423 RgaE Carbon Cycling Carbon degradation Pectin Caldicellulosiruptor lactoaceticus 6A superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor lactoaceticus; 8783.0461 32397456 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 13884.922 5506.863 14444.1239 30449.3354 2961.6987 2961.6987 1562.1167 363647008 cysJ Sulfur Reduction NA Citrobacter freundii 4_7_47CFAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter freundii; 4766.2828 4117.2934 2355.4531 86188.3647 6914.4024 5871.008 3918.9803 3918.9803 3790.6395 4417.415 3636.4172 77188.0685 6046.095 6141.9138 6497.8553 392954568 arsc Metal Homeostasis Arsenic Detoxification Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 2173.9616 4364.0334 148502274 nagg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 2324.748 51291709 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4320.1927 2126.6829 5280.9329 5592.8805 132981.0256 7598.6087 4632.8482 2062.22 2062.22 6303.6348 4917.3493 2896.2535 2875.4034 3495.418 4398.3954 1907.042 3948.6117 2223.6372 78189597 rubisco Carbon Cycling Carbon fixation Calvin cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 30559.7722 7811.4411 8707.2348 63444.1905 5358.4859 10864.7998 10864.7998 7115.329 5622.5545 45324.4784 74406.2228 8850.3734 4586.0875 6754.0341 1935.3498 4808.9816 2278.3898 18984.3098 315655436 amyA Carbon Cycling Carbon degradation Starch Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 2884.4348 3776.4272 7455.8764 4157.1179 2296.2282 4575.9505 374368538 amyA Carbon Cycling Carbon degradation Starch Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 4766.012 2440.5698 2440.5698 404496981 pchcf Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 14245.0583 4355.9945 4892.783 1800.4848 2619.0179 270288033 exoglucanase Carbon Cycling Carbon degradation Cellulose Acremonium sp. superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Acremonium; 2388.7071 5553.2184 15157795 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5894.4519 4278.063 6792.4179 60317.5502 3622.8634 3657.3676 3657.3676 7462.4206 3213.9964 4243.5856 4756.503 9358.1245 3188.8364 8327.1779 5129.702 2526.3428 2478.9051 3705.4815 2362.8815 5796.0848 117994857 terc Metal Homeostasis Tellurium Detoxification Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 2624.5552 1890.9605 2714.8485 385867122 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 65008.2644 302651357 gdh Nitrogen Ammonification NA Actinobacillus pleuropneumoniae serovar 6 str. Femo superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 5951.3688 2840.5106 41600.9445 22077.2222 7095.5686 3007.3153 3007.3153 7245.9349 393761491 arylest Organic Remediation Aromatics Other aromatics Alishewanella agri BL06 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella agri; 10372.0377 8734.6803 33535.7544 2498.0331 6542.4049 6766.1387 17321.2968 46093349 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2080.1707 2210.5209 2830.1105 4306.3474 4765.4392 4642.5045 5220.8026 2452.721 157679034 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13981.6632 5725.2267 320106667 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 3263.5452 3279.3908 2306.4489 8397.3433 15825.0264 262395356 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3023.9684 4394.3459 81531.9626 3674.4382 7118.2744 3757.1846 4272.4701 5739.8896 2461.7512 7030.796 8263.5591 2796.4826 3955.2843 238481795 Dyp Organic Remediation halogenated compounds NA Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 3666.0442 201607.1997 239806433 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 2713.6111 13495.8393 282951654 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 9117.8036 5168.2088 161388224 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 2417.3296 118164111 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 6226.235 4377.0046 19672.6863 123978245 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 2448.887 3630.8131 3457.5325 7016.9444 4397.4522 10354.6689 4176.4165 7444.4201 114341342 merb Metal Homeostasis Mercury Detoxification Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 2827.9842 3218.8676 3373.2097 3373.2097 5877.7632 2316.5575 3832.967 289662252 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas campestris pv. vasculorum NCPPB 702 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vasicola; 3711.1601 7726.8655 3861.0546 3861.0546 3261.2165 4608.9075 2768.2247 298379419 ppk Phosphorus Polyphosphate synthesis NA betaproteobacterium AZ(2010) superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 5026.8843 4020.7005 2672.9112 2672.9112 6611.5435 2138.1249 269977690 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 18644.7765 321269700 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 15800.206 12995.2201 7337.2841 76331.3725 9536.0111 2850.5903 4434.6942 9445.9394 2875.6613 4491.5407 2827.1025 2554.0757 6383.6672 37526122 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 9122.3429 6287.8405 20088980 ppk Phosphorus Polyphosphate synthesis NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 2563.885 170122356 dmsa Organic Remediation Others NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 7280.728 2195.7867 3865.7234 3680.7571 10309.4229 3038.9541 209966260 arsc Metal Homeostasis Arsenic Detoxification Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 4226.1554 3174.2604 4400.641 6532.9859 3844.6281 3844.6281 6676.9123 4420.3581 4512.0202 3004.844 32204.2988 8999.6486 18269.056 2958.9489 5297.3443 118472818 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4757.7091 4004.118 4361.9162 375148419 alginase Carbon Cycling Carbon degradation Alginate Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 3169.19 4179.2906 26410.736 5865.7886 6947.3151 149824018 bphF1 Organic Remediation Aromatics Polycyclic aromatics Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 2202.2932 4327.0145 3080.0092 10469.0376 9474.7767 4914.71 31520.5126 2926.8055 14484.0902 421953142 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3699.3725 165229.814 5598.3043 2445.1504 8078.7671 73749203 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 2946.7597 3156.6405 115551.2542 146339487 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3710.6737 1986.3464 3610.798 4316.6858 3904.0386 3734.5004 7595.3309 7752.4845 5753.397 6879.5993 2833.0883 7270.0728 3744.7018 10026.1458 5684.5433 6472.8697 3389.412 4531.6853 4157.4695 9648.736 118567723 soxY Sulfur Sulfur Oxidation NA Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 8524.7724 2306.326 209401784 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12544.9441 5634.2223 11632.926 3037.5404 80016.7993 4793.5256 7997.117 13817.9217 13817.9217 16867.8504 6739.6371 5837.2642 8557.1412 5743.1182 4328.5897 11879.88 8251.3306 15520.8289 3492.5437 4380.2586 4695.7823 5029.1438 111152782 amyA Carbon Cycling Carbon degradation Starch Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 1999.6281 3057.1585 3057.1585 15733.3123 5223.9163 1983.6433 4428.5671 1800.2614 2309.1594 262173915 chitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 2562.7945 308035599 cox1_Viridiplantae Other Phylogenetic NA Crustomastix stigmatica superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Crustomastix; 3287.4883 3889.6305 4739.5839 81295311 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. HTA-462 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 10172.2911 4960.0892 3326.655 2125.9892 3061.1451 77979820 tehb Metal Homeostasis Tellurium Detoxification Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 4540.4472 320539993 amyA Carbon Cycling Carbon degradation Starch Serratia symbiotica str. Tucson superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 19986.7028 3618.4109 9396.2551 3310.8884 4354.2622 39976557 cutinase Carbon Cycling Carbon degradation Cutin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 25077.367 4097.2417 1696.9851 338733465 mer Metal Homeostasis Mercury Detoxification Simkania negevensis Z superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 30491.8219 11384.4657 2678.6032 5516.5297 253573707 fosb Virulence Antibiotic resistance Degradation Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 2720.8092 3380.7227 7421.5104 5841.7229 3418.4315 166215.2043 6281.9405 9178.1737 2229.8742 2229.8742 10805.9547 14295.7113 7731.3731 6532.5443 6480.8368 6095.8047 12775.4969 3301.7471 12064.2947 2306.396 14958.4256 12148.9418 21799.397 3367.9947 4473.6898 4619.6977 2830.0801 6612.5293 85108032 exoglucanase Carbon Cycling Carbon degradation Cellulose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 2616.1059 54757.2127 29540.8248 6032.1564 6032.1564 2793.232 7327.3181 7085.7458 150401690 mcra Carbon Cycling Methane Methanogenesis Methanococcus aeolicus Nankai-3 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus aeolicus; 4109.5739 3577.9873 3436.2821 2328.1682 2328.1682 10761.482 4238.9197 4991.1758 4685.854 2835.1628 6942.8801 9571.7416 5656.2132 6723.7125 2529.9897 3657.6115 3907.2326 5136.2789 121707613 amyA Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3182.3404 5043.6507 2246.4056 2246.4056 2938.9172 4915.1741 2771.4339 6835.3584 2447.0539 27529599 dehh109 Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 4656.3122 51292.7045 104780602 nirb Nitrogen Assimilatory N reduction NA Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 10251.1923 11339.1136 8037.5981 3276.2334 3276.2334 6379.1068 23066.7862 2632.9437 2808.556 4363.2761 16037.2172 2673.0105 18770.1257 281300792 nrfa Nitrogen Dissimilatory N reduction NA Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 2444.2382 6375.7167 4331.3836 4673.0913 4357.1963 4357.1963 7614.0736 4858.3137 6960.1472 6894.518 14603.2405 6831.3138 6389.8999 11900.4347 6277.3215 6507.1901 3037.8589 4029.1059 2787.9595 325539569 cysJ Sulfur Reduction NA Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 4880.7606 3572.5398 5534.1731 2371.2728 4347.0111 323484524 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium symbiosum WAL-14163 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 2463.5725 4001.6524 6006.4465 77419.9511 5422.3669 3895.1461 5083.4449 2689.2546 2689.2546 3514.2785 8401.6541 6587.591 4654.0417 5619.6891 6350.4571 3953.1158 3432.1552 7048.9067 3992.5709 14619.5683 6248.9945 8247.491 4977.0132 5241.3173 3162.3043 7077.5538 156111125 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 2488.5935 12592.8832 3665.3 4691.9438 22027.1984 15330.9491 3678.7359 8834.1415 6783.5082 4315.4307 254517127 alkk Organic Remediation Others NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2440.1789 5270.5067 4923.8089 6361.1699 374855601 sqr Sulfur Sulfide Oxidation NA uncultured candidate division OP1 bacterium superkingdom:Bacteria; 6757.6398 150851613 pec_Cdeg Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 4746.2031 8261.3917 201905.7938 8497.1769 3943.2917 3943.2917 6980.0999 5308.7306 169868332 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 6646.3012 52787189 pme Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 2148.333 4270.2315 4046.1225 3137.2401 84972.1547 5114.4406 4746.6007 23350.1586 23350.1586 3335.8453 9972.2798 5150.4429 4658.2304 7361.1386 3060.0282 2886.6996 2127.745 7871.6917 422314507 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8875.9726 5417.988 4048.3505 3907.7093 65843.3172 25684.5975 2980.2866 9397.2906 53552.8478 5645.2335 6709.6164 5629.9436 5005.6757 6356.501 10853.0978 6209.2518 6178.5019 3614.1184 6468.0843 3922.8407 4443.887 13525.7012 156042520 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 15611.8493 16939.8154 5161.7286 6182.0132 387575512 amyA Carbon Cycling Carbon degradation Starch Streptococcus thermophilus MN-ZLW-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 2513.6391 9448.7058 6237.3508 157804739 aps_apra Sulfur adenylylsulfate reductase NA Thiocystis violascens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis; 6196.1553 4084.642 5982.8957 6953.376 379043293 nbac Organic Remediation Aromatics Nitoaromatics Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 2491.9163 3270.6548 7963.71 7047.2615 10359.1829 7858.628 6691.2324 9919.0341 2855.1217 6353.5268 32871.9366 118571429 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 2774.5572 4438.8622 8419.9581 3352.8698 3352.8698 5135.3112 3933.3966 4136.9557 4634.5855 7432.0081 5798.5988 2894.416 2335.7835 227833335 terc Metal Homeostasis Tellurium Detoxification Corynebacterium aurimucosum ATCC 700975 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium aurimucosum; 1861.359 2037.7375 2242.258 2242.258 6543.6151 4304.962 4123.9599 7351.1499 4609.0344 1793.1237 2645.8406 3592.6488 39030.5578 195974916 gdh Nitrogen Ammonification NA Streptococcus equi subsp. zooepidemicus MGCS10565 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 2617.2863 108771787 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 8056.3468 3839.8803 68057.0079 2669.5658 2669.5658 6225.1896 5577.0195 3037.1868 3158.257 2397.3817 5841.3242 260880311 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus AN-5034 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 3846.0588 111073785 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11717.8865 12010.5817 226280780 amyA Carbon Cycling Carbon degradation Starch Paracoccidioides brasiliensis Pb01 NA 3847.0047 7559.8887 186466867 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 2835.4969 4567.1881 7439.2763 3781.2759 3781.2759 299538737 pcpb Organic Remediation Herbicides related compound NA Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 3594.9521 3547.2222 78210.4912 2002.4521 2002.4521 7957.3944 1738.4027 294984151 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 2126.5731 71331.8897 8610.8466 8610.8466 3769.8563 5306.3477 1777.6869 2984.8802 365423675 ara Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2517.9581 5321.2253 18744.0103 5992.5779 5526.669 6235.97 8643.4377 3502.4995 5471.2448 1760.5247 4350.6725 2683.6307 356479424 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 3231.4141 2185.4515 38504.855 2533.6227 2533.6227 3335.5901 2866.684 5672.6599 2543.3307 10783.8158 2750.8151 4165.9395 4001.1041 2946.0599 4143.5899 297385031 mg_chelatase Secondary metabolism Pigments Chlorophyll Kryptoperidinium foliaceum superkingdom:Eukaryota;class:Dinophyceae;order:Peridiniales;family:Peridiniaceae;genus:Kryptoperidinium; 2358.9521 12838.5306 154687842 narg Nitrogen Denitrification NA Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 2339.6705 70672977 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2203.441 18034326 dsrB Sulfur sulfite reduction NA Desulfotomaculum alkaliphilum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 2343.8484 19683.0675 3662.5078 6202.7305 13228.6397 3064.873 83816541 nosz Nitrogen Denitrification NA Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 3548.5569 13332.7672 6522.7611 2205.9408 2205.9408 4022.2281 5216.6927 3065.9512 85090607 phenol_oxidase Carbon Cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 5763.8809 2626.2881 224348.1267 5048.6175 11894.8884 46454.9349 16504.574 16504.574 11903.7369 9581.724 6950.1258 94967359 ara Carbon Cycling Carbon degradation Hemicellulose Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 2278.6798 5163.0226 4611.6379 11968.9012 78357.3663 6226.0182 10409.0622 5386.8612 7419.0309 7044.5486 6401.11 6446.3052 20551.7021 3684.089 18768.516 4698.1028 13691.9851 8894.2348 6210.007 4096.6319 4972.9091 8599.2657 6842.9353 260611011 chitinase Carbon Cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 2662.3198 48130.8844 224018453 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 2377.4472 9581.0745 2923.0087 329760201 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 16329.2788 4138.0765 5418.0152 40963.4046 5115.8485 6567.041 4655.7609 25698.5431 2698.72 223039292 napa Nitrogen Dissimilatory N reduction NA Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 6223.9211 9137.6257 3756.7629 59100.9111 3366.6894 2836.1241 2836.1241 6596.6553 5942.5192 2331.9579 6545.2419 8048.7289 1790.4461 4970.4228 3011.9029 2182.1316 211905941 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2918.2259 2359.8959 2359.8959 9636.4046 315271263 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 4705.308 3942.5749 16530.3629 58499.3433 4148.5795 6546.4336 5427.4887 2801.3477 5089.4215 3569.5789 4147.6854 229170321 B_lactamase_A Virulence Antibiotic resistance Degradation Bacillus cereus AH621 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 2093.6078 91802556 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 2265.9835 269933901 cda Carbon Cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 15117.2993 2528.0718 115523536 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 7070.0028 6524.7182 6572.0607 3276.1993 3276.1993 3450.4749 22531.0989 4858.6818 29170.0702 5657.3781 331271956 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2285.3307 3702.1966 4350.5112 2936.4922 6308.9688 2809.4934 7838.7143 2362.8747 4608.5394 2342.5364 4125.5722 388586747 phn Organic Remediation Herbicides related compound NA Microvirga sp. WSM3557 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Microvirga; 3313.7288 6725.6229 4379.8268 6730.2003 2182.5172 11378.818 8492.6056 4038.486 2735.3826 4378.3834 325980822 metc Metal Homeostasis Mercury Detoxification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 3232.8452 8927.9272 4856.5234 49068.49 3368.6782 6671.1329 7361.6133 7361.6133 7038.2838 3602.5398 6739.3666 4518.5357 6663.9255 2043.94 8815.0679 4857.3413 3646.8688 3372.2624 26762.093 144905764 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2364.5113 156838920 exoglucanase Carbon Cycling Carbon degradation Cellulose Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 4818.1279 2736.9171 3739.5582 3687.5552 229760961 cellobiase Carbon Cycling Carbon degradation Cellulose Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 2286.259 3314.8294 3457.4654 4233.258 2621.3245 1819.9992 164455882 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 28745.3692 5178.4603 6903.1853 11350.8826 11350.8826 7262.7073 7640.8519 35180.8872 16063.0223 170655499 dehh109 Organic Remediation Chlorinated solvents NA Methylobacterium radiotolerans JCM 2831 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium radiotolerans; 2406.6648 2477.8685 8077.0442 5735.4804 4156.0655 361956190 atza Organic Remediation Herbicides related compound NA Oribacterium sp. ACB1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium; 3662.3087 2166.6534 315181446 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 2961.4253 6695.2708 7464.5965 7696.3509 8779.2709 5613.1984 1816.5245 4946.0967 3637.6046 60593146 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2354.5799 6329.401 6329.401 5135.115 2880.9261 5361.8508 9478.7872 5938.4379 2178.5634 257446984 ppx Phosphorus Polyphosphate degradation NA Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 2640.9174 3404.6319 6761.0866 3890.9209 4564.3994 5154.9786 3537.4577 1855.7887 3191.9595 2085.3789 119499475 badh Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4544.3885 3426.0732 4323.5189 3905.7678 60352.3922 6427.2699 3044.6109 3044.6109 4256.4025 7642.7388 3226.9782 16460.5741 11880.2049 7376.3889 3229.7181 5070.1544 533367 xylanase Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium; 3761.2844 26245.641 300770981 rgl Carbon Cycling Carbon degradation Pectin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 4846.6828 164455278 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2350.9651 85715087 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 6413.195 3966.7213 5689.423 4435.9655 2124.0472 3684.3346 2927.8078 4559.6258 255344153 amyA Carbon Cycling Carbon degradation Starch Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 6767.8164 4614.9174 7255.3989 4510.0627 6177.4952 6345.9993 206677138 dmdA Sulfur DMSP degradation NA Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3720.2779 4218.8354 4600.6941 7170.4957 5835.2429 17995.6757 5344.1754 6874.639 3428.6257 4772.1962 372267087 alginase Carbon Cycling Carbon degradation Alginate Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 2555.1907 3406.2522 4831.0202 10458.2742 71481.5443 7030.0044 5464.7332 3721.4575 8183.0488 5592.4863 6736.7393 5891.5591 3439.8091 3842.1211 8433.9799 2384.0437 12095.4363 5437.2867 10887.1777 4376.817 4268.1663 6743.9319 3731.1082 8669.9917 239991742 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 15273.9767 4865.336 17052.4749 11407.9512 2154.7407 2154.7407 7011.323 4977.2816 2417.9535 7974.7509 5419.9338 5800.9045 2056.9348 3160.7429 2818.1039 7476.9655 189435438 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 2517.8009 3271.4651 3271.4651 126043.7947 41301.2503 219676989 vana Carbon Cycling Carbon degradation Vanillin/Lignin gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7820.5811 118504215 linb Organic Remediation Pesticides related compound NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 2530.0923 6340.3684 3331.7385 4644.6185 7310.1428 2217.7104 2217.7104 9641.4084 5392.2065 2628.5047 26949.689 2412.4546 9329.6026 4372.6653 7088.7643 2603.617 3244.1276 4487.8565 5940.53 162453705 xyla Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 3113.425 93433.462 7733.5648 299782934 xylanase Carbon Cycling Carbon degradation Hemicellulose Lactobacillus fermentum CECT 5716 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 12635.3554 7950.1856 8268.2262 375753186 ppk Phosphorus Polyphosphate synthesis NA Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 4102.5194 13800.9431 169007914 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6764.4504 3267.0358 4942.2948 15140.7687 5415.3003 121300.604 4505.4719 6786.5467 13389.0165 13389.0165 4151.365 12741.7249 8731.0823 47118.1628 2915.053 7024.7383 3806.7431 19366.9328 13845.6913 7873.5083 2548.4109 6149.7536 5844.9851 18248.0134 74038456 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3133.2722 5938.435 4146.6844 3196.6013 291197244 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2641.4552 68135461 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9163.4251 2808.5372 6340.9398 3963.4384 12997.4987 4808.3526 3168.6802 2777.9245 2941.7893 9923.6245 6102.8541 283766106 xylanase Carbon Cycling Carbon degradation Hemicellulose Trichoderma sp. SC9 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 2450.3555 8366.468 5045.7128 80714.9646 3452.227 18955.2468 29455.365 8358.7758 3414.4349 391354013 amyA Carbon Cycling Carbon degradation Starch Desulfosporosinus acidiphilus SJ4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus acidiphilus; 3138.163 12870.7099 77766.2783 4204.3283 14477.4939 5305.9482 5305.9482 118424398 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2385.777 8338.1374 82046.9128 4698.4087 6487.0664 20414.1555 22723.3656 3143.5551 5895.7001 2873.0422 9913.9005 5682.9581 2987.8707 4026.0702 2128.4531 357059015 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 16989.9859 3258.5354 4872.0421 5903.141 17540.7197 9482.3546 386420829 SoxA Sulfur Sulfur Oxidation NA Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 3029.2646 14698.2475 333791928 amyA Carbon Cycling Carbon degradation Starch Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 10719.7475 5727.6866 7507.9134 5184.0517 6068.3603 330963772 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. actinidiae str. M302091 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 2440.4774 4592.564 10145.1046 2810.731 115433835 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 16307.3329 5317.0838 3188.883 4310.4022 146379.0288 10792.8337 4566.0412 6966.1482 3167.8322 7004.1474 6091.6385 12213.2487 5438.058 7162.6446 2957.8921 6626.9537 2929.1905 7660.7697 8809.4813 342802522 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 2297.6977 2127.6976 3230.0478 6724.8356 2005.2005 2005.2005 6686.7661 3937.4394 2084.29 3149.5915 3889.4242 56710254 nitro Organic Remediation Others NA uncultured bacterium superkingdom:Bacteria; 6128.3628 14066.9587 4664.3385 6086.907 4368.8295 97202.8582 6548.3402 4738.5869 15235.7986 2701.3802 4283.5085 4200.3883 38136.7038 330941657 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas syringae pv. pisi str. 1704B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 3337.1407 3135.2919 2780.4385 8505.4633 398206248 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2189.6124 4467.1376 4275.7829 3262.9255 4849.9338 5548.0193 3948.1507 4520.7131 2727.9943 115861.6949 2795.5661 4373.2197 7118.1945 1902.3117 3067.9072 112253.1985 2742.2685 5081.1653 298535556 amyA Carbon Cycling Carbon degradation Starch Deinococcus radiodurans R1 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus radiodurans; 2699.6366 2186.1042 2186.1042 435096.0837 260063925 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7853.9218 298431.4023 3730.5407 6058.5314 2377.0756 3045.9906 1982.6882 338974995 b_lactamase Virulence Antibiotic resistance Degradation Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 2572.4673 113924.4606 114126.7663 5689247 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 10512.9965 7083.3803 2168.1435 2168.1435 3777.8093 2921.6992 154798213 gdh Nitrogen Ammonification NA Babesia bovis superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;family:Babesiidae;genus:Babesia; 7841.6145 19497.4249 4035.9522 6755.4067 88781172 ppx Phosphorus Polyphosphate degradation NA Polaribacter irgensii 23-P superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Polaribacter;species:Polaribacter irgensii; 2027.6153 3127.4685 8129.3488 4422.2114 3919.5106 4988.6862 4059.2614 2118.0389 2581.4745 2486.9431 3190.51 11538.117 6529.7891 104782203 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 2466.3225 5884.1799 332177285 amyA Carbon Cycling Carbon degradation Starch Porphyromonas asaccharolytica DSM 20707 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas asaccharolytica; 3900.7682 3784.9623 8208.594 285397.8963 285397.8963 6961.7129 68156.0828 11806.0768 41954.2881 2418.4695 378401758 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 2541.0025 3530.0654 4928.0444 68237.2048 5477.6084 5767.1887 326768.0471 13524.8838 5285.0238 7919 2427.3344 3812.4114 10198.071 5174.3308 6348.4325 4157.1548 16708.6687 293552.8086 442084.9023 297170446 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured myxobacterium HF0070_11L13 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales; 2205.9632 209960767 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 5333.3733 6162.3154 4555.217 4528.3443 40390.7201 3431.6035 4118.2959 154245465 SoxC Sulfur Sulfur Oxidation NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 3632.6279 14326.0525 11436.8725 3864.268 13426.887 5420.7241 4456.0757 4456.0757 10679.2314 10859.718 4194.1471 5074.3678 8047.7769 10155.1301 8036.0332 6024.5722 109646667 ppx Phosphorus Polyphosphate degradation NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2258.0582 6815.9603 4052.366 5055.7569 11026.9217 2255.7999 3460.1298 2293.2815 356642542 dsrB Sulfur sulfite reduction NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 2297.565 2585.331 8797.2394 4237.8917 4930.4736 5208.5961 5111.0914 3795.6864 2195.1932 2184.881 7557.9871 2092.4584 8313.0897 6934.9872 4348.7424 339468175 axe Carbon Cycling Carbon degradation Cellulose Mycosphaerella graminicola IPO323 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Capnodiales;family:Mycosphaerellaceae;genus:Zymoseptoria;species:Zymoseptoria tritici; 2459.3501 6678.8052 63563.7808 3760.6121 1864.9839 365122057 amyA Carbon Cycling Carbon degradation Starch Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 2392.2522 2911.0512 6004.4195 3041.2657 66797.596 4992.7659 3414.2734 6493.1678 4211.1789 5109.9145 2190.072 5394.9308 5044.2062 2252.2365 3135.3446 2944.3713 2168.4231 6386.2113 28864395 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2469.5226 3603.1274 3710.2788 7149.4124 4980.0125 2409.1337 12200.524 3899.0026 3725.7875 4546.7972 4003.3615 2997.8866 300390366 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 39425.7214 17865.4563 1807.1687 3162.2243 291481304 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5241.7011 262350093 terc Metal Homeostasis Tellurium Detoxification Vibrio sp. RC586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4211.7141 4601.3268 82618.0321 4654.5813 3008.2672 5825.0174 5109.5117 3341.1922 5242.5519 7010.5977 2987.9514 3699.9317 5479.1143 118588350 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 11103.2665 26876.4613 31697.3722 2364.1774 2364.1774 14656.5533 6936.6292 5401.0701 5142.3204 13922.4657 7836.0094 2873.4912 3064.0035 29722.2654 19729.2752 88643278 dsra Sulfur sulfite reduction NA uncultured prokaryote 13568.6997 7887.3455 13560.65 4665.5206 4665.5206 324319642 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 9071.419 288866105 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 2556.1256 3396.3891 386384163 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 5002.6056 2793.4152 53126.1524 3870.7656 3870.7656 2900.5266 2419.0905 183178983 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes hirsuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 2270.8418 9527.629 11455.6036 4082.36 725590.1583 5465.7444 3131.5372 6775.6742 4525.7266 5384.2522 7046.8129 4960.9316 5916.1687 2700.9552 6611.4258 3653.135 4162.75 5261.3715 158251634 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 2208.5424 2650.9286 4757.7602 5224.5948 4656.5509 1913.2036 67154438 proO Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 330072.1401 77820030 nirs Nitrogen Denitrification NA uncultured organism 3617.016 4170.3226 6382.3776 11658.7925 5945.8049 2255.141 2504.738 10257.4995 3952.4592 8874.2798 1735.4986 2351.4008 34017058 mcra Carbon Cycling Methane Methanogenesis Methanocaldococcus infernus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus; 4459.0354 5384.443 214030581 urec Nitrogen Ammonification NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 3641.1801 13965.7513 3504.3451 5759.7632 5365.0279 4022.3867 2413.3307 29076.6233 5573.6464 1929.9996 3815.1368 5923.767 36783554 pula Carbon Cycling Carbon degradation Starch Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 6098.4325 7083.423 187714855 pchcf Organic Remediation Aromatics BTEX and related aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 2841.7785 3666.0815 315279926 pula Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 2099.5305 6524.0155 4699.4408 359726117 b_lactamase Virulence Antibiotic resistance Degradation Leptospira weilii str. 2006001855 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira weilii; 2247.4562 3120.403 5003.756 2936.6219 2936.6219 10390.9095 3976.0914 7345.2254 2416.9887 10669.2308 4480.117 7483.2991 3838.0917 311113532 norb Nitrogen Denitrification NA Rothia dentocariosa ATCC 17931 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia dentocariosa; 3699.3044 18300.5401 333939077 phdci Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5049.9857 7074.6884 205582.9691 4592.0401 7270.0472 5027.0357 4490.5208 24889.8633 3333.0867 2340.3133 2607.8925 6570.6816 6673.4739 4994.7817 182412928 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 3331.6031 4148.2509 16005.2756 8308.1138 31471.9446 5751.9109 14407.807 5609.4395 8909.1668 126387813 pcag Organic Remediation Aromatics Other aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 2526.1038 403200916 catechol_b Organic Remediation Aromatics Other aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 2430.2521 3827.2707 4529.3973 4245.8286 5785.8164 8227.4606 4827.1917 5373.8075 7159.2597 9659.1146 6623.1746 2816.2964 9515.1771 4895.0839 6640.7714 3233.7092 4944.9602 2771.4032 5802.9598 226721678 ppk Phosphorus Polyphosphate synthesis NA Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 11461.6027 8077.7419 6189.1382 8512.1445 4725.0948 6116.2688 374702103 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4946.5788 2642.3476 4846.645 40119.7447 40119.7447 3476.9806 46307952 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3855.7209 14716.1455 2557.4811 373880187 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 3186.7414 101990.3483 5223.8893 170368.3257 4238.7636 2701.6754 10385.4153 5741.4865 2891.5882 2475.7632 5274.6754 133737817 dehh109 Organic Remediation Chlorinated solvents NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9203.8253 48979.0782 68227.474 3583.5144 2640.4503 2640.4503 8431.934 5575.5421 4879.7157 3705.895 3423.3725 8958.0462 8099.3544 2622.5136 70989423 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 2733.6193 13996.8994 2088.2227 2088.2227 6418.591 2306.019 3826.8725 2743.5967 5333.3196 2357.3599 2856.4837 8342.7748 2816.9106 35571.6317 74276799 dmsa Organic Remediation Others NA Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 3068.3118 26391.1523 2709.4116 84378061 alginase Carbon Cycling Carbon degradation Alginate Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 2337.8703 2501.8702 1698444 endochitinase Carbon Cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3723.5726 3248.8244 95845.9189 3288.1655 3288.1655 3296.3211 8094.9234 5230.5373 4733.3053 6106.1207 2386.4119 11931.509 2334.9014 10675.4094 4698.7002 5362.0099 3217.5694 3583.4778 4533.4155 3196.6949 5570.2958 163782521 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 2995.316 8123.3009 2338.6044 64494.6207 5981.8366 17460.7479 4334.03 13072.5541 5102.7662 4710.6617 4125.6538 15304.2607 2973.3357 3194.453 4317.9182 6576.8439 2808.2419 5246.5931 6031.7486 6148.8732 198260474 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 6244.5173 3626.6601 71797.1327 42195.8146 20483.4925 20483.4925 4362.026 10287.1174 8810.4448 6196.3195 8362.6111 32333.799 81675.8602 12889.9286 10955.1117 2854.3012 2352.0402 5671.3323 222475776 mer Metal Homeostasis Mercury Detoxification Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 81732.7864 3812.3847 15625.9675 16239.576 5745.978 4838.2526 4335.3322 84313.7572 5728.804 2988.706 3888.5716 8510.1467 5257.2271 11814.2279 2352.1678 4976.7847 373890834 xylanase Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 8523.9402 5213.0843 5099.757 343962994 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9478.0321 4712.4118 359779794 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 2042.8672 3609.8695 3452.6968 3274.0014 4898.9067 4787.375 87016.1022 2902.4312 5946.1774 5019.8147 2997.1857 3019.0112 2462.8919 389575996 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 3599.6876 36743.5143 22810.2285 6456.1563 6456.1563 8117.7642 4991.9906 5788.7655 4907.1946 6996.5522 2464.8481 306487907 nirs Nitrogen Denitrification NA uncultured organism 4371.0978 2316.3351 5298.9661 61834.3037 4780.269 3558.4995 6444.6211 28482.0998 5851.2431 4123.3157 5836.1256 2268.6604 6850.5326 4641.615 5144.3858 2444.8458 4532.1193 4688.8674 2330.0594 5633.1953 317051295 arylest Organic Remediation Aromatics Other aromatics Desulfurispirillum indicum S5 superkingdom:Bacteria;phylum:Chrysiogenetes;class:Chrysiogenetes;order:Chrysiogenales;family:Chrysiogenaceae;genus:Desulfurispirillum;species:Desulfurispirillum indicum; 17993.3609 12344.5005 10717.0405 7093.7182 22777772 xylanase Carbon Cycling Carbon degradation Hemicellulose Oceanobacillus iheyensis HTE831 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus;species:Oceanobacillus iheyensis; 5189.325 172335.175 14000.1268 219548826 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 3249.0522 105752.1676 4331.0647 12625.0392 6552.6208 6552.6208 288961636 badh Organic Remediation Aromatics Other aromatics Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 2449.7228 5475.1694 69246.6742 6760.1694 9018.8932 9018.8932 7270.2594 7948.8504 116505035 ara Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3475.5748 68836.9516 4951.9449 30872.1724 7369.6297 7369.6297 4242.0135 6179889 exoglucanase Carbon Cycling Carbon degradation Cellulose Alternaria alternata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Alternaria; 2348.3229 4643.6292 4270.9201 4799.3994 153853180 ppk Phosphorus Polyphosphate synthesis NA Dorea longicatena DSM 13814 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea longicatena; 2701.0629 34955.4766 62228.7953 5142.352 9986.0862 4388.8685 2658.175 4338.7756 8107.6119 4107.9163 4851.8591 7909.6516 7029.6027 336398129 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 12332.9639 124549809 arsc Metal Homeostasis Arsenic Detoxification Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 3518.4739 7734.5042 3661.48 2907.9413 5389.4362 3586.4224 25137.3615 4220.8424 128170.402 7399.5653 302877275 pgk Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 3504.5073 62120301 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 2506.7952 3229.3239 2970.2072 394212.7316 5877.2616 11786.5779 1958.3691 1958.3691 5841.6026 5479.3328 4717.9796 2514.923 2772.6937 4279.053 5033.0139 2696.9796 3619.2668 2155.3141 36967.2383 319652350 vgb Virulence Antibiotic resistance Degradation Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2533.1271 4325.4306 3665.1724 6509.112 5402.5709 7005.5599 5128.3383 4545.8595 6856.2032 3695.2033 3310.8826 384084194 SoxA Sulfur Sulfur Oxidation NA Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 2881.2026 2671.173 333807378 cysJ Sulfur Reduction NA Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 3586.6393 2518.7792 7601.6416 9857.8537 4414.0222 8038.5628 5456.815 4777.2895 3334.5528 90107585 sqr Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 17383.0347 41945.8909 6871.9996 2470.1431 195098.9457 37547923 tcpa Organic Remediation Herbicides related compound NA Arthrobacter chlorophenolicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2826.4955 2723.1418 7702.1815 118171253 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 3003.4694 4388.3365 5046.9087 5859.9585 7439.9226 1706.7358 3145.7057 197086215 mer Metal Homeostasis Mercury Detoxification Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 4430.4359 2998.2686 6019.3133 346224311 xylanase Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 3237.0496 5647.6957 70307.8422 261286292 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6096.1526 2679.1805 6540.7267 170936.6206 6305.0525 21492.7947 4013.6445 4013.6445 6194.3766 3585.8013 4799.0955 5909.1801 6428.1088 7437.9599 51315.7312 302675224 pec_Cdeg Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 2783.9491 5055.8698 308048821 amyA Carbon Cycling Carbon degradation Starch Ferrimonas balearica DSM 9799 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Ferrimonadaceae;genus:Ferrimonas;species:Ferrimonas balearica; 3034.9392 1952.5961 21384.6748 16531.5806 370934.2373 5513.0341 2189.3262 2189.3262 9261.6728 3962.0242 8016.8626 5823.8638 2135.1234 9337.1416 2237.5268 3868.2059 4912.2648 2646.501 2878.5642 5099.3636 7972.7852 298550957 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 3163.6377 4257.3329 5410.1238 140963.0645 8791.4973 7104.2131 2472.8727 7560.2629 33243253 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2190.0412 9616.309 6787.4377 4219.3465 7731.8574 3099.1977 298294137 exaa(moxf) Organic Remediation Chlorinated solvents NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 9033.9491 5682.8697 223936637 xyla Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 2342.6049 3529.5456 4728.6092 2841.3179 2841.3179 5869.2394 4083.4299 5426.2495 2405.9283 5607.0664 6092.2344 3331.7419 3556.8963 2864.517 386434265 ppx Phosphorus Polyphosphate degradation NA Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 3729.0731 383630.5984 7287.1721 49993.0348 201905.5987 146188507 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4480.9263 12799.7034 5134.3503 4027.3855 4027.3855 3271.429 2943.2847 2926.299 2723.7384 1895.4109 387847392 linc Organic Remediation Pesticides related compound NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 5030.7326 3392.954 3648.3179 27529.8572 6113.9315 5080.7031 26904.4086 5831.1795 5688.7335 9015.7196 10956.7305 5046.3501 4929.7813 5745.8852 8387.4525 6079.0338 389711063 arylest Organic Remediation Aromatics Other aromatics Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2558.7719 2470.8223 9916.8588 4596.8146 313674846 amyA Carbon Cycling Carbon degradation Starch Marivirga tractuosa DSM 4126 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Marivirga;species:Marivirga tractuosa; 4231.2893 27661.8936 6198.4804 343506851 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 17689.4114 22492.9532 4353.7843 2377.8102 67595.4202 24581.2384 6997.2431 70835.8977 9141.9167 11158.5377 16544.4913 4087.8826 7126.3129 4865.8613 11014.86 363719142 arsc Metal Homeostasis Arsenic Detoxification Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4388.5812 3474.3187 6372.3213 4436.2386 6604.3605 5075.4839 6038.5752 13458.3697 3156.0922 2851.3885 5734.5344 2660.3142 7720.9177 2236.8864 3431.3859 4325.4224 2709.9268 6014.712 88777409 hbh Organic Remediation Aromatics BTEX and related aromatics Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 3513.3475 2645.3231 19259.811 126641402 hbh Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 3705.9584 45386197 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 2513.5012 2982.231 2583.7592 2583.7592 5039.0095 8547.6767 535329.1192 3974.2688 4390.3631 5012.9806 17173.1646 4373.1976 2555.4855 12274.9005 89952845 endochitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 4417.0146 5025.9343 6092.0526 3025.5765 371589167 badh Organic Remediation Aromatics Other aromatics Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 2286.506 4473.0683 56143.1218 13668.5799 3781.3962 3781.3962 11867.1532 7244.4278 3525.7239 5406.9988 2301.833 4839.9467 8495.3714 4818.6757 6396.1482 4002.7192 3944.8267 8542.7346 2730.8016 156934923 arylest Organic Remediation Aromatics Other aromatics Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 15785.9621 2515.7317 2515.7317 2583.1815 8623.1971 3174.444 1991.2663 169605081 protease_serine_fungi Carbon Cycling Carbon degradation protein Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 6684.6506 13860.1635 7082.0273 312196157 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2647.4403 17784.8429 7526.2937 266623081 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 5462.8981 3249.737 3036.0483 4482.8838 229544161 cysJ Sulfur Reduction NA Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 60852.5833 407773608 phn Organic Remediation Herbicides related compound NA Thalassospira profundimaris WP0211 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira profundimaris; 2944.7784 4342.9017 2504.1449 2501.9931 344174824 arsc Metal Homeostasis Arsenic Detoxification Ralstonia syzygii R24 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia syzygii; 2540.3605 3167.6659 128801.9877 10204.4671 6755.0798 4242.2826 2850.4748 83026004 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 2860.3484 9830.7787 6883.8764 117188617 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4939.5406 4966.187 47564283 arylest Organic Remediation Aromatics Other aromatics Bacillus cereus G9241 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 2462.7291 4348.9055 6758.8858 4097.1357 4657.9174 2532.3648 4963.2124 2744.1618 3011.5868 218262438 atza Organic Remediation Herbicides related compound NA Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 5808.3912 4697.5825 1926.9728 306981589 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2628.8419 261857048 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2456.5365 22377.4921 5719.2644 15790.3345 2375.9247 17545.0353 1695.3231 145224318 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 2470.2879 10061.5273 118430.4028 8134.3959 5733.7653 5733.7653 9076.0021 4370.4646 149177368 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 4462.7419 3876.035 18665.1713 6666.7386 3960.6354 4311.0291 6915.1899 4328.1897 5090.0887 5181.0747 4872.9348 6070.4738 2959.88 9742.0595 6242.4713 2308.0191 3515.8436 8161.0164 29466060 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2058.3732 6101.1203 3957.7812 21795.9898 3793.1887 5117.9793 2101.5939 3103.7564 2873.4496 21647053 sqr Sulfur Sulfide Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 4300.5935 5116.3781 3322.0528 380774716 amyA Carbon Cycling Carbon degradation Starch Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 12141.093 5476.8902 2909.926 6057.2822 291069861 bphd Organic Remediation Aromatics Polycyclic aromatics Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 3531.6612 8435.3583 8481.9492 3594.6142 176446.2655 3682.6394 3423.3952 3655.5458 3655.5458 6595.9399 4421.0169 4604.3026 8178.8378 7362.6262 15755.8924 6045.8444 6677.2548 6449.1404 6389.5323 5328.114 5613.9408 5116.9381 21242039 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas axonopodis pv. citri str. 306 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas axonopodis; 4378.1144 2167.0926 74654.1503 3877.2839 12742.0235 2947.3373 2947.3373 3382.9024 9101.8666 5745.5324 6446.8102 9057.9451 3756.9955 3040.3734 6799.63 4780.2677 19919.9475 4419.7634 9092.2346 2447.3877 4031.7309 2248.4016 352104968 arsm Metal Homeostasis Arsenic Detoxification Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 4505.8005 5015.2857 339885187 ppk Phosphorus Polyphosphate synthesis NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 4445.0766 24311.3558 3363.38 336425774 dsra Sulfur sulfite reduction NA Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 9521.2202 2422.0703 9231.1877 6729.6266 14468.3548 3832.268 3086.3652 3964.8907 2068.4818 8516.6244 9428.7638 13694.1247 14707.178 4033.912 2941.8417 4728.6834 4265.9092 110633045 terc Metal Homeostasis Tellurium Detoxification Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 16085.2452 199852.1688 1711.3123 344690004 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 34224.0712 11207.1978 4680.7514 4680.7514 6563.9106 4068.3352 26595.4759 20003.3151 6156.548 356700390 cda Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 2517.7209 37813047 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 6586.872 129105.8595 19817.3895 331002594 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae oral taxon 107 str. F0167 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae oral taxon 107; 3186.6041 2928.118 6307.199 6328.793 3484.2743 2131.6435 8241.4061 54778325 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2823.1902 70983053 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 3027.3425 4992.9015 2682.6372 315126266 arylest Organic Remediation Aromatics Other aromatics Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 2621.8109 2918.3095 5437.2708 2433.0496 2433.0496 11608.229 3458.8202 19951.3427 14011.1006 392978036 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Enterobacter cloacae subsp. dissolvens SDM superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 2048.4738 2913.4468 3100.5109 6633.1265 4126.8133 1926.7877 2655.019 4372.409 323495318 amyA Carbon Cycling Carbon degradation Starch Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 3014.8957 12735.0696 14032.6603 349687512 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 2526.8083 2092.8366 34483866 dmsa Organic Remediation Others NA Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 2499.5135 59389.8504 3646.4315 6806.513 2404.9362 12146.0878 4368.6425 2432.3946 3513.9803 5515.9137 219548071 cysJ Sulfur Reduction NA Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 2264.1717 5260.8585 9660.3439 4121.4703 358004779 poba Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 3080.8623 112463089 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3924.1008 3311.0157 3424.0311 13418.8732 5957.9396 8574.5071 9877.3477 125085.5908 3752.5254 10165.816 4689.0653 21936.9383 3064.285 11121.2747 327441809 xyla Carbon Cycling Carbon degradation Hemicellulose Solibacillus silvestris StLB046 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Solibacillus;species:Solibacillus silvestris; 15700.1979 347758254 pgk Carbon Cycling Carbon fixation Calvin cycle Micavibrio aeruginosavorus ARL-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Micavibrio;species:Micavibrio aeruginosavorus; 7583.0269 2193.2795 2254.8031 2254.8031 2811.7286 5834.0568 105999.5759 3613.3235 47228.5765 3377.352 332992594 atzb Organic Remediation Herbicides related compound NA Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 88471.3583 5051.2695 3587.0426 7618.6004 11369.0657 7760.0526 331023994 pcag Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 11337.1253 9261.7449 4639.8027 71730.8051 7946.9234 4835.4996 11557.2405 5081.6891 5081.6891 9310.8939 5527.0978 4170.3871 11372.1751 7822.8912 3715.4077 3610.9619 3578.1287 20252.8671 4997.981 2397.3345 8250.964 5220.9312 337287522 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermodesulfatator indicus DSM 15286 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 75906.0748 3636.251 379988327 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 519952.3248 5808.2993 9101.143 3199.2526 209401712 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6289.7087 3573.7584 2635.0895 6459.5323 4247.7108 4811.5316 21023.2059 2222.0523 10056.0493 7023.3808 6794.6539 2228.6127 7293.7539 4339.9627 384516004 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 3106.2757 381157751 dsra Sulfur sulfite reduction NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 3205.4633 2108.5297 4028.714 3114.8712 3114.8712 6787.4569 9424.6007 5728.7409 2964.9315 3701.9548 4650.0013 319954424 alginase Carbon Cycling Carbon degradation Alginate Cellulophaga algicola DSM 14237 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 2826.6823 3254.5778 2841.0187 6755.3501 118424530 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 19383.605 12864.3869 6838.7771 3346.7966 2402.7949 2291.6692 342349413 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2494.944 4465.3682 8649.5943 86141495 tehb Metal Homeostasis Tellurium Detoxification Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 6405.2788 2589.503 123880.1586 3780.0113 2933.6989 6784.8313 7961.8089 635500.1059 1778972.7759 283462.9846 58134.1928 9798.8666 29193.7715 5541.6091 221533170 linb Organic Remediation Pesticides related compound NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 7766.9688 9853.862 352095034 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3463.9398 6204.3363 2736.9595 338973618 chnb Organic Remediation Other Hydrocarbons NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 3617.7879 57216.3861 3708.3881 4782.5198 1939.2945 1939.2945 3767.4159 9040.8364 3221.1918 3256.467 7487.8529 5857.9067 5931.0114 2139.5927 13355.025 3221.5351 7246.1866 282899403 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 3041.4896 29293282 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2581.2589 3209.5952 72240.3639 4221.4768 2651.3348 9128.6977 6400.8342 10663.4723 5548.5478 2290.3593 3037.7545 5258.3129 296931337 amyA Carbon Cycling Carbon degradation Starch Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 2688.9733 7216.7977 3909.9687 4478.4797 4674.716 10093.9982 6070.491 2042.2544 3059.8291 3142.1816 169742873 dsra Sulfur sulfite reduction NA uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 2157.2235 5399.5272 4123.2808 2913.929 70948.4567 4126.1522 3422.1153 3422.1153 7290.2255 5467.6412 7099.8051 8077.8657 2125.3148 5208.9182 91227516 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 3370.4724 5495.6941 39959829 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2488.0087 4496.1091 40788173 phenol_oxidase Carbon Cycling Carbon degradation Lignin Melanocarpus albomyces superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;genus:Melanocarpus; 2507.5856 3310.5417 1646.3009 41395431 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 40687.0779 8660.6189 8660.6189 66801901 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 6514.0194 13329.0051 342352453 arsc Metal Homeostasis Arsenic Detoxification Cyclobacterium marinum DSM 745 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cyclobacterium;species:Cyclobacterium marinum; 7564.1244 5790.4341 44014.9494 408782801 linb Organic Remediation Pesticides related compound NA Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 43667.9442 5420.9032 17251.4989 151302224 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacterium sp. PM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 3374.2906 4702.6624 3898.0996 2736.081 7967.4789 2006.2373 7613.2242 197626134 PRI Carbon Cycling Carbon fixation Calvin cycle Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 12416.865 7862.2544 29771.7489 4284.5509 4284.5509 6616.6907 5456.2858 6668.3495 4990.6723 315664136 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 6815.915 29466024 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2263.0395 2757.9872 6983.1984 5322.9126 4465.955 6599.8587 6059.359 2445.8545 4550.0809 7008.2666 78367229 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella sp. PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 3069.6311 86476629 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 2866.7618 14660.3049 5062.0351 5062.0351 16539.2681 393702661 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 2530.5519 6693.3834 4472.7984 8788.4967 98660.0408 15369.8619 6754.5432 3126.6934 17593.1895 4614.7762 7433.1822 2256.0784 4638.59 120431232 phenol_oxidase Carbon Cycling Carbon degradation Lignin Monilinia fructigena superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Monilinia; 3182.1265 347308897 amoa Nitrogen Nitrification NA uncultured ammonia-oxidizing archaeon superkingdom:Archaea; 99780.3971 3737.2273 6563.3171 5187.4186 4626.1996 95000.5406 3823.4402 1612.486 33112.5863 42523723 alkh Organic Remediation Other Hydrocarbons NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 4838.7739 1655.9668 2466.3342 17506.3883 320539565 arsc Metal Homeostasis Arsenic Detoxification Serratia symbiotica str. Tucson superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 2901.0646 9519.312 3237.5264 3938.9092 4873.152 4873.152 4297.0231 7159.2143 4797.3598 2766.7147 3392.3853 1845.0965 4277.5544 2987.3288 281196197 urec Nitrogen Ammonification NA Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 3420.672 7532.341 119951727 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 6530.3589 6081.1168 9025.1998 5884.6986 5841.7375 9624.6823 517137 amyA Carbon Cycling Carbon degradation Starch Natronococcus amylolyticus superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronococcus; 2545.9693 307129496 xylanase Carbon Cycling Carbon degradation Hemicellulose Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 2349.6279 1995.0862 7380.0171 5485.3431 3661.0663 2701.9697 10706.0911 2139.1581 7053.5297 97945.3916 4154.0131 2683.4595 358374480 nitrilase Organic Remediation Aromatics Other aromatics Aspergillus kawachii IFO 4308 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 11996.9435 136015.5446 6302.8511 182415513 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 3338.0508 3563.9571 4667.7275 12466.9832 8791.157 4567.3601 2646.2323 2770.5349 148977391 endoglucanase Carbon Cycling Carbon degradation Cellulose Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 4186.3891 13059.7249 311094834 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus oris PB013-T2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 2159.6871 8745.1346 4962.1181 95025845 pec_Cdeg Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 2736.7005 7101.4065 3379.3004 10509.8685 2839.609 4897.0773 2185.3438 2185.3438 4421.2526 2836.2586 7859.3641 7300.1427 7892.2375 2149.8127 317047233 arylest Organic Remediation Aromatics Other aromatics Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 3584.8422 4150.4851 8492.4994 4009.0706 4009.0706 2019.0827 170123725 ppx Phosphorus Polyphosphate degradation NA Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 4122.4935 354615988 bphF1 Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 48238.8962 5988.6911 4365.7269 6687.0428 308800532 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 10555.2636 9274.9376 10699.2278 45935.691 1987.778 257219380 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9778.7347 3143.6669 5600.6298 110739.0776 116271.1017 116271.1017 3048.5986 7526.83 5785.4157 5433.025 8895.5138 2328.7923 6685.3696 16986.7588 5214.5804 5668.4246 2429.0932 4639.9378 4147.7272 12450.0636 149230359 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 2199.317 10453.9522 196141.3157 2248.5689 2248.5689 7113.7841 7918.2677 4562.7543 2230.1598 5848.6392 156742382 catechol_b Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 2398.5365 2421.7761 79453.4574 9463.0307 16845.6182 6520.2191 8260.2598 1707.0174 338810821 dsra Sulfur sulfite reduction NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 2863.5174 371772230 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 2449.971 4228.9436 2223.8576 2223.8576 3331.2366 6762.9874 4456.2677 11934.9341 8427.7083 4075.8073 5840.1239 2014.7951 254438154 alkb Organic Remediation Other Hydrocarbons NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6449.106 2631.2221 10544.0278 10474.4111 2028.8099 6574.7884 384932851 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. JS superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5109.9848 2645.1426 2248.5905 328940965 pula Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2705.4626 220726562 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 5616.8788 4979.7698 3232.1161 3232.1161 8681.2225 9179.5931 2841.4716 3280.1969 5312.7961 12829.1555 119473327 pec_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 2373.6314 27146.6817 4574.3595 3841.4552 2671.233 6079.5173 4250.1145 5213.905 2583.537 5347.6623 2153.6383 8715.7743 3979.1035 2921.4208 3420.0096 5585.3006 124004000 nitrilase Organic Remediation Aromatics Other aromatics Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 4680.2145 288546251 gdh Nitrogen Ammonification NA Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 6537.5118 10251.9552 398142353 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2608.0372 4526.6102 8406.5511 2868.6633 4281.3114 256370937 rubisco Carbon Cycling Carbon fixation Calvin cycle Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 3018.7937 7150.352 18769.7924 112258.8426 14545.3834 3837.6359 3837.6359 6332.7691 4202.4263 3111.2212 7223.421 3378.6123 30048.2381 5981.0884 7200.7997 2408.0336 3298.5679 5466.996 4038.3336 167037093 cda Carbon Cycling Carbon degradation Starch Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 7066.9329 19792.1851 6699.7583 4164.9982 45001.0489 2075.9152 2075.9152 9106.6268 4495.103 5256.5034 2980.7877 7788.2632 9791.755 6018.4145 9703.825 8726.6725 387968636 limeh Carbon Cycling Carbon degradation Terpenes Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 2878.4736 3715.9574 2333.9585 3296.3193 288817522 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 2315.4141 3282.2658 3357.2234 2350.2894 87035.9621 5317.7015 7812.7373 5493.9275 3655.3491 5551.7929 2714.1455 3073.2747 2500.6401 325126365 amyA Carbon Cycling Carbon degradation Starch Lactobacillus delbrueckii subsp. bulgaricus 2038 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus delbrueckii; 2322.2541 6692.8551 5081.2724 2650.5277 3796.0183 2437.0253 10961.1467 297538557 urec Nitrogen Ammonification NA Methylotenera versatilis 301 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera versatilis; 2268.3167 15757.6141 2778.8056 315646645 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4439.0138 6859.1974 5580.7632 88859843 arsc Metal Homeostasis Arsenic Detoxification Pseudoalteromonas tunicata D2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas tunicata; 6192.7496 24335.9083 2203.9142 2203.9142 3794.045 4267.139 3216.7453 4321.3921 2325.3513 9930.3314 371589428 ppx Phosphorus Polyphosphate degradation NA Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 4446.529 16814.5761 172041825 mnp Carbon Cycling Carbon degradation Lignin Heterobasidion annosum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Bondarzewiaceae;genus:Heterobasidion; 2238.8666 1967.7945 4357.9879 3511.1112 3760.2121 2078.4551 2078.4551 3374.9495 7747.8426 4372.9636 5963.7935 4757.214 5715.6031 2374.175 4643.337 2141.0478 8915.4606 8315.52785 1819.9399 2560.8755 3776.9753 6118.1993 407427308 xylg Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 19735.8115 2352.5805 2849.9161 60505.353 18785.8154 18785.8154 3971.8814 8780.0342 12209.6999 5450.4442 1668.2744 2979.0722 3613.3096 323366252 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2162.1175 6926.2764 2649.6933 2649.6933 5741.8084 3698.4609 4555.0242 5784.1822 1809.7093 3013.3928 3263.5929 261364170 ppk Phosphorus Polyphosphate synthesis NA Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 3143.1097 14390.5737 3904.3592 3904.3592 2218.1464 117164436 linb Organic Remediation Pesticides related compound NA Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 3659.2968 15076.8928 3569.0046 3569.0046 11326.9654 14240.6625 11937.6599 6736.0354 2642.7596 374368672 nhh Organic Remediation Aromatics Nitoaromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 6476.2082 3344.6499 5218.3449 5218.3449 7204.6038 4872.6728 160917593 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9331.2687 12299.2056 3091.8222 4268.5266 389890573 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium bifidum BGN4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium bifidum; 3562.9526 3731.7931 4660.0411 6280.6972 4291.875 7477.5865 2984.2935 3076.9556 7625.5596 302885360 lactase_fungi Carbon Cycling Carbon degradation Lactose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 2324.6219 3977.4782 6083.0362 3600.5805 4378.7965 7800.1839 7800.1839 4340.6913 4395.6219 5165.0686 4227.0878 13848.4326 66551.2432 850265.8318 5259.0283 3490.009 343969.0167 4910.3615 3277.6681 33391397 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2839.8138 4263.5133 4217.1941 4013.6868 5087.525 5434.5266 5434.5266 8622.7679 6536.0269 2767.487 4845.9255 5209.8405 1698.8155 333482002 alkb Organic Remediation Other Hydrocarbons NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 31126.3712 6310.169 10620.5544 12687.5457 2067.3265 2067.3265 4985.8656 7223.7877 3129.9108 2966.9542 6705.3999 10008.3512 6645.8556 9910.4353 288919390 xamo Organic Remediation Other Hydrocarbons NA Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2311.7592 3219.1515 283969675 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma sp. Seputih superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 2295.9063 3776.6109 3705.9397 49124.1914 16671.4314 24061.4348 10509.0606 151122.288 8795.655 35078.1058 24138.9672 29561.6783 45159.1336 12508.9997 19275.7144 9834.2484 158434700 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 2464.5128 3241.8099 7123.3064 2627.2413 97237.9837 3977.8272 3343.6834 3343.6834 9592.6459 5114.6585 7087.2879 2838.6075 3966.4912 5334.7243 4331.5204 319785647 xylanase Carbon Cycling Carbon degradation Hemicellulose Pseudoxanthomonas suwonensis 11-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas suwonensis; 4021.4148 121307589 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 15678.2731 5255.1828 4187.3348 2279.4972 12287.7167 1871.7628 2491.1351 3093.5401 347547606 chitinase Carbon Cycling Carbon degradation Chitin Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 3041.8865 5112.8756 59830.8011 8227.4588 3759.0189 5365.894 2318.512 2890.5927 357427789 cellobiase Carbon Cycling Carbon degradation Cellulose Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 2425.9626 4517.0148 84205.8057 4141.602 5467.2655 6243.1461 7875.0448 4124.8645 3347.3638 3653.0612 4195.4557 2045.5404 75164.4831 4037.123 7439.9132 388262662 xyla Carbon Cycling Carbon degradation Hemicellulose Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 3163.5586 3965.5051 23895.4997 7278.1692 7278.1692 53127.083 5480.5632 3566.0774 2090.1794 341926055 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 4829.1183 345876438 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 4017.2063 3437.2791 5847.9344 60476302 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 147299.0119 6266.9287 55771.8552 1368281.6453 23834.429 436380.4358 304401.1876 396944.4111 254514465 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2356.4405 1956.5417 3697.6139 8046.9165 2853.0601 2646.3057 124515907 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Leptospirillum rubarum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 2783.8579 7156.2508 4484.5293 3035.0591 11784.6587 2690.0604 392384472 amyA Carbon Cycling Carbon degradation Starch Azospirillum brasilense Sp245 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum brasilense; 8338.1248 3377.5735 9166.6536 2895.7377 295697117 bphd Organic Remediation Aromatics Polycyclic aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 4821.2546 6980.1935 5806.4304 2833.2955 2833.2955 2685.3345 4193.8423 6123.6106 5427.3836 7263.4087 7235.9021 4582.2363 5450.0676 2191.5554 5369.8211 4825.1323 50119447 phn Organic Remediation Herbicides related compound NA Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 3121.222 3564.1676 4803.6218 4993.0114 185419.5584 9253.4805 3966.5264 3347.5172 9795.9085 5278.3938 13206.6739 4732.0202 3059.2097 8487.8874 2395.7284 9377.0083 3752.5225 7265.5787 3302.6407 4777.6197 4695.2773 5736.9765 288963245 arylest Organic Remediation Aromatics Other aromatics uncultured sludge bacterium superkingdom:Bacteria; 4170.9008 2235.9884 8099.6751 13127.4203 13129.2217 72487.2931 4406.0598 8808.4363 7338.9031 8844.8299 8844.8299 12908.4885 4823.8806 21728.6152 7689.5681 5377.7406 3635.1826 7676.8318 3589.779 9355.6431 8738.9399 1786.5746 5847.0063 5845.2617 16164.6446 13114.9131 392951498 catechol_b Organic Remediation Aromatics Other aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 3586.5106 7072.8069 82618401 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2555.0516 151281401 SoxB Sulfur Sulfur Oxidation NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 4845.341 3689.8178 1971.9058 1971.9058 12722228 ppx Phosphorus Polyphosphate degradation NA Pasteurella multocida subsp. multocida str. Pm70 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Pasteurella;species:Pasteurella multocida; 6098.8087 4930.9619 2875.0486 71370965 endochitinase Carbon Cycling Carbon degradation Chitin Paracoccidioides brasiliensis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides; 4148.3363 307773211 phn Organic Remediation Herbicides related compound NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 2258.1214 91807158 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 3105.0121 3085.1741 2613.3251 2479.3251 5535.5811 134094424 soxY Sulfur Sulfur Oxidation NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 2150.6155 10985.6104 3443.8242 16211.2647 4828.706 92685.7985 4165.2434 3434.2382 3434.2382 13614.0902 7615.8916 6556.8804 7301.6537 4415.6005 8335.1697 6380.5453 19619.3322 7427.6611 4796.4781 3422.9963 3048.6258 10489.7085 2409.8571 337748709 cda Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 3376.8748 8382.8737 10040.5302 4034.4366 17547874 vgb Virulence Antibiotic resistance Degradation Ralstonia solanacearum GMI1000 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 113345.4603 51057.8074 82182.2004 300715103 terc Metal Homeostasis Tellurium Detoxification Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 2219.836 2700.2638 6920.7199 4994.7957 4709.335 4554.6858 384129821 arsc Metal Homeostasis Arsenic Detoxification Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 31847.8384 4548.8209 8687.4802 6117.4811 375266798 Sir Sulfur sulfite reduction NA Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2384.9439 337291754 urec Nitrogen Ammonification NA Corynebacterium ulcerans BR-AD22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 8851.7312 6953.6886 4785.7814 2210.1091 2210.1091 6835.2229 6833.0236 2387.3539 4615.6764 3302.0012 345020990 chitinase Carbon Cycling Carbon degradation Chitin Ornithinibacillus scapharcae TW25 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Ornithinibacillus;species:Ornithinibacillus scapharcae; 5442.215 7176.9077 399545078 nitrilase Organic Remediation Aromatics Other aromatics Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 2356.6099 255279977 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 4046.294 5255.332 54073.6065 4223.6847 67858.9199 6652.6275 4754.2624 2858.0226 2858.0226 4382.2379 7804.0593 7223.7507 5361.4287 6468.1685 3955.1295 5722.0367 3733.7202 9261.8425 7981.4623 5459.242 4373.527 3622.7212 6159.1633 4677.5592 283379474 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus salmoneostramineus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 2471.2062 6414.8802 5365.726 16009.8795 4760.9344 2468.6127 13446764 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2317.3286 58519.4303 10113.2533 6554.579 2877.8287 322511662 rubisco Carbon Cycling Carbon fixation Calvin cycle delta proteobacterium SCGC AAA007-G21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2073.797 3908.4771 232694.9961 4331.3236 4637.6338 8384.1243 3900.8369 4692.6547 2181.0275 4221.5624 7405.5871 8460.5051 2403.7786 3411.349 3954.1911 5496.3048 401775148 nitro Organic Remediation Others NA Methylocystis sp. SC2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 3030.1743 2994.935 3540.3133 3978.9405 92841.695 4314.3541 9717.8837 2465.4192 2465.4192 7077.0255 3963.21 4338.0867 3217.45 3053.0491 6338.5959 10099.0306 6755.9231 2768.4384 3912.5739 4940.5646 157846392 terc Metal Homeostasis Tellurium Detoxification Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 4392.8602 359759991 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4060.6799 3824.3859 3824.3859 11133.9588 4048.5503 353673738 urec Nitrogen Ammonification NA Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 2972.0129 2013.4291 102905.226 3134.875 5180.5329 2251.7879 6265.4493 3807.2263 4785.4152 2836.4125 3413.6162 292655605 gdh Nitrogen Ammonification NA Haloferax volcanii DS2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax volcanii; 11501.4435 2877.8634 2375.252 2375.252 5713.4392 7074.1891 2290.9763 5309.0711 7922.9631 2863.5169 3086.9827 7432.3572 56908358 alkk Organic Remediation Others NA Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 14529.6767 3131.3223 2824.093 12053.0931 7331.2511 218225820 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 6565.1424 4771.1925 4409.3302 11301.341 6628.2029 83701112 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4498.2188 68608.124 7941.6581 4150.4499 21057.8429 14487.9257 6439.2083 50725019 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Sphingomonas sp. A4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 372011.3167 88866373 dsrB Sulfur sulfite reduction NA bacterium LS1415 superkingdom:Bacteria; 9887.6999 94825.6397 3727.7942 237904399 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 2489.7443 2796.5702 118617205 amyA Carbon Cycling Carbon degradation Starch Mycobacterium ulcerans Agy99 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium ulcerans; 9535.2804 5529.8571 3085.1878 8671012 dsrB Sulfur sulfite reduction NA Desulfobulbus rhabdoformis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 3800.9232 4673.1405 8244.3977 7612.5516 3350.513 5330.8385 5988.5773 9927.9926 227217066 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Anaerococcus tetradius ATCC 35098 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus tetradius; 4715.8876 23606.58 5505.5327 2549.897 269836788 pcpb Organic Remediation Herbicides related compound NA Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 4015.1806 8502.2996 404421665 scnabc Organic Remediation Others NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 2923.4379 5461.6719 359760141 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3908.2128 3729.5146 5565.0964 218759920 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 3524.99 3712.5433 79371.1075 9890.5352 9589.6013 9589.6013 4251.085 12492.7655 7106.273 5508.9283 20299.6923 3198.1205 3294.4631 7499.9888 85670669 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 2228.8772 4174.826 4056.901 8162.709 2358.1982 2358.1982 4415.9445 7556.1637 4641.5514 5363.6757 2626.2126 13310.3751 358752627 ppx Phosphorus Polyphosphate degradation NA Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 13015.1081 294483214 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Simonsiella muelleri ATCC 29453 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Simonsiella;species:Simonsiella muelleri; 2715.1857 3395.5126 4496.192 2685.2258 4612.625 5352.6961 2786.0468 8219.0629 4987.0022 18984.7442 6090.7801 4898.557 2466.5601 4560.243 3641.1338 6620.7129 4380.7236 5885.0807 3287.6416 8080.772 126460263 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 2024.3787 2061.9944 2061.9944 3303.85 262310196 tehb Metal Homeostasis Tellurium Detoxification Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 5782.6449 3715.5422 3109.9972 6869.7262 3692.0269 4785.0955 353201717 pula Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 6565.9266 2225.0975 2225.0975 9749.6714 2966.3847 2996.6932 218716789 badh Organic Remediation Aromatics Other aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 2632.2398 9550.3833 344690062 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2265.8995 119670771 arsc Metal Homeostasis Arsenic Detoxification Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 2320.8491 2348.796 2896.0261 3855.0026 52802.4906 9018.4056 6119.0954 2108.5724 5454.8313 8184.2255 5229.5007 2534.1964 6191.3227 116205756 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 2189.087 3385.3698 2552.9655 7733.2924 6699.3097 5272.7057 2072.2648 3719.5998 7357.6006 13497.96 328837899 amyA Carbon Cycling Carbon degradation Starch Gemella haemolysans M341 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Gemella;species:Gemella haemolysans; 5382.6507 4203.9737 291513742 amyA Carbon Cycling Carbon degradation Starch Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 2527.3688 4631.2779 3820.0975 26390.6647 4901.8537 2598.3298 2598.3298 4058.8508 3975.0742 2509.9783 5056.3859 2078.3528 5621.9041 1690.5975 3003.4073 56556.8545 386388643 nirk Nitrogen Denitrification NA Haemophilus paraphrohaemolyticus HK411 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus paraphrohaemolyticus; 2325.4651 3354.9129 4227.279 73094.2687 12186.4715 17783.4958 8525.0549 3347.9813 12502.6743 3028.0133 336321017 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 3310.0052 9569.2641 4502.587 2757.181 9930.4713 15972.2774 5391.4532 157060173 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21443.6245 3808.7362 4769.4615 3931.0588 3931.0588 3083.9206 5598.4882 3942.6715 2410.0611 2490.3515 5829.9464 5259.3017 10259.465 16331386 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 5277.6146 2558.1928 2558.1928 4953.6654 11482.8059 2314.011 90439572 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 2060.0171 6647.2442 283816721 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 42411.296 18160966 APS_AprB Sulfur adenylylsulfate reductase NA Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 9382.8788 338854791 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Weissella koreensis KACC 15510 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella koreensis; 2843.1394 7973.2999 4362.5542 5585.1119 20129.1881 21524.8927 14630.8443 120902.2935 3464.9719 3343.6627 9722.2282 7008.3787 36305.2976 33281.9867 103484195 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3793.4027 4004.912 2155.9044 2155.9044 7843.9872 4521.7034 11307.2882 2748.3343 12073.985 2569.8451 3412.6203 9056.7727 222112087 phn Organic Remediation Herbicides related compound NA Diaphorobacter sp. TPSY superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax ebreus; 2753.543 73534026 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4071.1592 4915.4429 5927.6183 1476767.3902 4692.4007 45525.9333 4872.3226 4872.3226 6656.565 7846.1181 11369.3217 11293.6416 9812.813 5994.7966 10669.5008 7797.2222 17250.982 3836.5873 4188.6716 3088.5233 17427.6458 373856434 xylg Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3903.4319 77962972 xyla Carbon Cycling Carbon degradation Hemicellulose Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 3820.2182 8601.1676 3355.4554 4876.0913 6071.6356 3079.4294 3079.4294 13913.3644 14835.9542 2811.8597 3162.4166 6909.3298 9982.6145 8191.5965 18343.3988 5968.6555 5160.0041 7349.8867 8564.1002 27381288 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 2054.4726 117648352 amyA Carbon Cycling Carbon degradation Starch Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 2433.7858 5850.5476 7596.0284 7596.0284 2846.2841 10834.8732 4267.7509 41033725 mer Metal Homeostasis Mercury Detoxification Thermoproteus tenax superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus; 2653.5898 8261.8016 2440.1969 2440.1969 8433.8989 3198.366 4176.9405 2804.6656 2195.561 8233.5237 2116.987 7190.1418 6722.4587 6079.9329 2702.0388 3005.9274 4261.7198 4901.7229 226726365 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 4278.7331 2983.9274 2983.9274 7940.6402 2869.1344 2341.8171 14595.1365 6279.231 2771.1108 10376.1037 211905645 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2210.0356 4332.3457 3956.3194 4995.5912 4416.068 212527782 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 2494.8835 2109.2991 3629.2458 5880.8762 4821.6052 2945.0033 2491.5634 2443.5092 150964166 amyA Carbon Cycling Carbon degradation Starch Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 3365.6214 1991.1222 7750.4389 5032.0066 5032.0066 15630.7974 11264.3831 6859.7556 5454.4988 9296.4572 5368.8784 1757.4172 4119.53 2924.485 2094.4549 308433870 amyA Carbon Cycling Carbon degradation Starch Dermacoccus sp. Ellin185 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermacoccaceae;genus:Dermacoccus; 3580.3969 5965.2417 3800.5974 8686.2067 3105.4905 148258671 ben_bcla virulence NA NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2219.5792 100434.7047 4398.5716 4173.1606 3126.3315 75334.9998 15137.3921 1975.6057 5926.1188 164455830 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 31433.0589 3424.0229 4189.1612 5121.8366 13101.7551 32834.6539 4704.7767 298517364 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4514.4544 3158.829 4965.945 2904.6587 5760.9138 6958.1871 4296.6785 380696092 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 2504.4376 9442.764 339504340 amie Organic Remediation Aromatics Other aromatics Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 6542.6373 4493.8098 4801.0043 65133.1365 13283.611 2842.6956 2842.6956 2763.6113 8141.2897 8618.6477 5488.6543 3575.8678 3448.5333 9362.5631 8347.3659 6940.725 5380.0204 2613.4909 4106.5829 3872.4338 3741.0841 5241.655 154295968 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6571.0468 4295.1602 3254.1796 2766.4078 337757890 oxdb Organic Remediation Aromatics Nitoaromatics Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 3269.4864 81558.0661 4075.8993 17651.0637 7439.6426 7439.6426 33415967 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2777.0025 2083.2386 2450.81 68513.2805 5081.6611 7994.5916 7795.237 3066.1666 399539379 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 9607.068 2967.364 5583.4902 9099.4043 225208466 amyA Carbon Cycling Carbon degradation Starch Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 4870.255 6118.9427 296818763 phospholipase_B_fungi virulence degradation NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 2213.5926 6077.6046 3199.0181 3199.0181 18172.8962 37665541 beta_agarase Carbon Cycling Carbon degradation Agar Microbulbifer elongatus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 6032.9581 61266.8374 5062.6914 9034.3039 9034.3039 6780.2623 3214.9658 2471.856 6466835 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pycnoporus cinnabarinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Pycnoporus; 2321.2951 2668.9629 5708.7543 1822.2202 3339.9098 381198830 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 7163.7135 3855.2684 4661.0499 175658.729 8887.9981 6294.6379 24720.9268 5205.1968 6897.7211 13626.9793 3281.233 6497.8372 150036074 soxY Sulfur Sulfur Oxidation NA Leucothrix mucor superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Leucothrix; 2446.5128 2957.3893 319790244 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 7776.7642 4773.9074 261820638 ppx Phosphorus Polyphosphate degradation NA Pectobacterium wasabiae WPP163 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium wasabiae; 2309.0332 1845.9496 3240.4948 3441.9234 3441.9234 4521.9699 2861.0601 4742.5392 3026.2005 5154.9266 399039955 cmci Organic Remediation Aromatics Other aromatics Rhizobium sp. CF122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 2894.4594 5058.7461 3037.6444 4639.8623 2186.6 2186.6 3986.9891 5399.3903 7077.8329 4594.38 7538.6164 2555.4077 2692.8087 4520.9111 2981.0461 4167.1861 223892044 chitinase Carbon Cycling Carbon degradation Chitin bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 2408.5611 6093.2924 82223.0729 3769.5805 23568.8656 3381.6329 3381.6329 6373.6812 7834.3119 4769.7306 1662.4124 2999.7434 3717.05 3508.5955 311284530 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 3054.5902 3934.404 2917.1174 2917.1174 6685.6514 3973.7009 6272.3239 2567.5249 5176.9356 2452.9645 2936.9316 3273.7134 110280967 b_lactamase Virulence Antibiotic resistance Degradation Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 2343.1505 239626947 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 3965.8644 6522.2677 3889.2827 12322.0598 80637.2734 4984.0729 5103.733 5708.6345 8104.0442 8104.0442 2610.2792 5751.7812 3467.5232 2869.3586 5972.2204 10914.6036 10028.4058 5159.512 5215.361 4611.2887 4293.1559 2159.0601 392548504 arsc Metal Homeostasis Arsenic Detoxification Pseudoalteromonas rubra ATCC 29570 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas rubra; 181821.2883 4143.6312 8276.132 61427.0769 4397.3375 6953.0411 17030.291 9183.022 52242.9002 62131446 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 14245.2573 9010.9711 4825.8121 404260657 scnabc Organic Remediation Others NA Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 2665.0134 2580.2807 15076.268 2503.7236 1997.7594 116265013 ppx Phosphorus Polyphosphate degradation NA Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 2613.3466 3299.5215 4632.9269 3235.1216 84363.5778 4829.6436 4790.0981 6338.8443 13320.9949 3996.6082 5388.8612 10328.4791 2262.8119 3791.1005 8600.3384 41803.3663 13369.481 6992.277 8439.9489 2321.7621 16386.1479 5100.8711 4560.1858 302660671 endochitinase Carbon Cycling Carbon degradation Chitin Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 2175.6737 8155.4389 8155.4389 4328.5603 3700.0432 13723.3344 115376492 xyla Carbon Cycling Carbon degradation Hemicellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5564.8296 113398.1102 8264.868 2984.8285 210148991 amyA Carbon Cycling Carbon degradation Starch Clostridium nexile DSM 1787 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium nexile; 2516.3564 6124.1802 4740.5554 3565.2681 2815.9914 12862766 phenol_oxidase Carbon Cycling Carbon degradation Lignin Colletotrichum lagenarium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 2834.1136 6118.7454 169813614 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 2324.7089 333448778 nifh Nitrogen Nitrogen fixation NA Nostoc sp. LCRNK_16 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 87291.7679 144906022 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3812.0643 109452561 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2525.7941 3024.4589 3012.3453 5755.5478 5509.737 2010.4995 3278.0286 8603.1605 10370.4345 5276.7011 8084.4862 1926.9566 3681.0283 3185.5061 387968275 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 4671.6867 5452.3929 5452.3929 14025217 linb Organic Remediation Pesticides related compound NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 2562.664 7487.9687 4915.7049 4915.7049 9277.6922 85830172 pme Carbon Cycling Carbon degradation Pectin Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 95273.8186 29025.9851 3157.0412 4452.2236 2429.696 8454.5607 3136.6477 3946.7732 124111021 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 4157.6178 88936984 amyA Carbon Cycling Carbon degradation Starch Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 5903.0381 5523.3966 24425.2021 6141.0084 2819.7501 218356526 cmci Organic Remediation Aromatics Other aromatics Escherichia fergusonii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 3036.3058 406915765 atza Organic Remediation Herbicides related compound NA uncultured bacterium superkingdom:Bacteria; 2875.4901 4180.2383 169316.2061 4271.0747 2079.0338 6864.9183 5266.5763 2792.0532 87130702 nosz Nitrogen Denitrification NA Pseudomonas grimontii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2240.7632 3512.7252 3512.7252 2355.8971 353210316 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 3631.91 10465.56045 110886.4015 5328.9088 3105.9915 3195.7108 7844.2207 3968.3443 6971.5737 4419.3166 9068.5712 8905.3437 6843.5507 1984.0786 4129.12 3722.4206 4400.9378 7590.2272 302525095 pcag Organic Remediation Aromatics Other aromatics Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2442.2872 3294.3702 12271.2916 5340.1876 4968.6197 6122.7187 376007562 FBPase Carbon Cycling Carbon fixation Calvin cycle Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 3696.1849 125717247 atza Organic Remediation Herbicides related compound NA Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 3278.2718 5719.4323 5230.0572 219996664 dsra Sulfur sulfite reduction NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 20945.8781 7555.0905 652616.1871 6900.3481 6900.3481 6240.2214 2216.7746 2331.3763 3664.6558 1615.3576 5983.3078 46914841 Sir Sulfur sulfite reduction NA Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 2666.1723 383456622 terc Metal Homeostasis Tellurium Detoxification Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 3086.2711 4368.0304 160879970 aps_apra Sulfur adenylylsulfate reductase NA Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 3626.2609 2928.1681 4812.687 10260.7668 2435.731 2435.731 6367.1577 4022.1307 46777.3816 5484.2327 2252.0915 9650.5312 4712.8972 300502671 tehb Metal Homeostasis Tellurium Detoxification Chryseobacterium gleum ATCC 35910 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Chryseobacterium;species:Chryseobacterium gleum; 2317.8595 3853.7649 304438526 mer Metal Homeostasis Mercury Detoxification Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 10187.0402 8692.8562 6064.9791 307742753 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2415.2619 61228.5353 8961.7304 5638.2827 7268.7734 6223.7614 9848.2369 2811.7135 5416.339 7935.0689 9251.1492 4064.1015 5916.2709 2857.0285 4368.079 309397434 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 3904.5796 3094.4206 308213075 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 3505.4591 6288.8683 4746.549 112289.1116 3383.1087 8917.0725 6358.662 6104.9907 3452.2494 7675.3816 3286.3349 6183.8839 7037.5564 2120.1719 3425.4708 4700.5863 7832.7175 329759599 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 13080.8173 146284230 pgk Carbon Cycling Carbon fixation Calvin cycle Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 6107.9168 5311.8267 5821.9647 15574.261 8415.264 467616.9606 15250.0379 5497.758 7697.7353 7697.7353 18943.0509 4628.2349 8605.4861 11234.9259 11078.0816 11956.2946 8614.5868 3837.0477 7656.8381 305658599 cueo Metal Homeostasis Copper Detoxification Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 17342.0635 349688384 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 2458.8275 6645.5134 1929.5558 1929.5558 2261.1992 337268426 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 4721.5297 16193.2376 165376.3276 9371.5615 9371.5615 6407.242 13219.2777 9278.9054 3646.2706 20442.4974 8266.1589 4469.6872 2812.9023 2509.4537 219965742 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 165102.3799 6396.9525 3088.35 2874.8247 2874.8247 9044.9165 3946.6642 15429.5591 4343.4319 170064.0556 344226562 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 42495.2528 268590103 urec Nitrogen Ammonification NA Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 3268.2864 24100.5877 24100.5877 9769.8627 3607.7598 3215.9119 2638.7989 330912533 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 3555.2722 79541.3023 5591.2673 12412.9727 5337.5021 5337.5021 4367.5759 5815.5032 1788.9128 356659618 badi Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 3225.9796 6279.0995 15525.1457 6362.8363 5295.332 8122.3193 41041.277 5665.0781 5665.0781 32659.2299 11015.4611 9006.0405 15003.0959 6404.613 2587.5826 4504.7334 224944207 ppx Phosphorus Polyphosphate degradation NA Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 2949.628 60095.4937 4236.9201 9162.6141 4070.7807 2336.1357 328840475 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 2470.0596 101309.0758 291614149 dsra Sulfur sulfite reduction NA Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 97213.4601 5419.971 11299.241 7583.0893 4533.4683 296416701 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 3313.4349 3229.6225 21852.7836 4899.3627 72008.4048 2165.074 2165.074 2931.5419 10566.3347 4653.7939 5388.83 8928.5186 8353.5829 3312.7598 6665.7053 3683.8555 4547.4361 5349.0135 2209.0827 5032.6453 6605.5341 387132220 amyA Carbon Cycling Carbon degradation Starch Prevotella intermedia 17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella intermedia; 3527.7821 556698.3921 2550.0133 225042798 atza Organic Remediation Herbicides related compound NA Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 6702.9469 4463.0388 17992.7047 17992.7047 10933.2951 6917.4455 4562.3022 5885.8417 3684.0406 115282563 cysI Sulfur Other NA Burkholderia ambifaria AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 3585.8726 147322.7986 5923.3327 7526.8642 3100.0441 5531.5447 5966.9441 2501.5514 3349.4789 19636.8087 6076.8025 121530665 arsc Metal Homeostasis Arsenic Detoxification Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 3503.144 2834.5676 2834.5676 5341.8998 212171534 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 2038.6897 365122022 amyA Carbon Cycling Carbon degradation Starch Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 2330.6192 2262.416 5177.8029 3566.6174 8141.8872 4159.1174 4885.1445 8795.3394 5541.6356 2741.6682 3089.9632 8727.0493 5729.9398 6798.6388 3206.8141 4719.5472 2713.7901 20278799 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4779.7425 12145.4193 2705.5985 4271.8568 4606.3887 8090.3966 8090.3966 5967.9993 4849.6329 5251.8215 4935.0226 6410.5583 10945.652 34003.0241 5136.2073 5648.0414 2289.1955 6176.853 125256.363 35502.1877 302698007 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3414.3733 90186.7954 2075.3895 2075.3895 2225.1819 7773.4254 5177.7033 42547.5671 3371.9442 356663176 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 2423.9236 4077.4606 3810.5151 422314143 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3731.5969 27819.746 64483.48 60568.0736 4001.2962 6451.1953 5852.4666 15363.0515 15363.0515 3609.5715 8268.3096 13897.6851 5638.5479 2373.4191 15348.2609 7714.7767 3405.8621 3442.4178 291556468 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Eubacterium siraeum V10Sc8a superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 3510.2414 320107868 arsc Metal Homeostasis Arsenic Detoxification Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 65574.6231 12361.2594 5366.7649 6060.7284 4021.3836 4021.3836 3091.549 8802.3616 5229.8759 5148.1601 7661.0936 3198.1635 6610.5429 20553.1773 14297.9727 6142.5263 1687.5187 3235.4576 3303.0209 77378453 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6060.35 6617.5966 283830633 alkk Organic Remediation Others NA Candidatus Poribacteria sp. WGA-A3 superkingdom:Bacteria;phylum:Poribacteria; 2886.4797 2987.3911 112464129 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3759.944 16891.3491 21432.9694 10184.2254 2942.3474 8788.5917 4252.6123 3653.4448 10050.3254 149288857 xylanase Carbon Cycling Carbon degradation Hemicellulose Scheffersomyces stipitis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces; 2188.691 3972.6844 3952.0454 6389.4925 5854.4259 5863.0129 2107.3181 3212.4622 21623498 nosz Nitrogen Denitrification NA Pseudomonas sp. MT-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5174.7547 4147.4657 6597.1052 4428.7542 5621.3857 6865.036 4603.2495 5690.8992 2455.4323 2911.1889 4205.3414 118174596 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 16561.4334 1969.5855 60831.327 5354.9382 2530.7199 2530.7199 6296.2004 3454.6034 3770.6874 7114.9499 8425.7999 3134.9247 3082.1329 3424.4029 2613.2025 5849.6295 28542629 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2193.9917 384371758 urec Nitrogen Ammonification NA uncultured bacterium superkingdom:Bacteria; 2377.335 2492.4446 9133.9013 7471.5379 2566.9758 67752.1755 10294.9685 3916.7993 4836.07 2713.4381 2713.4381 6459.1588 5232.2169 9409.1593 4368.7977 3444.9871 4171.455 5710.5544 1996.4117 7877.8205 6651.4723 2111.7162 3812.8325 4504.4366 2392.2888 225045471 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 3078.9228 117511.6562 5883.7195 24012.4746 8050.2725 8050.2725 14560.0812 3865.6087 2453.5973 327372716 SoxC Sulfur Sulfur Oxidation NA Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 3423.8014 4343.003 23916.3226 3666.9451 3955.2195 14265.1622 14265.1622 3856.9038 7740.49 4227.3384 5790.9332 13604.8499 2445.5316 4010.2321 2649.8399 46307988 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 31327.3152 38791.6195 164456114 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6819.4234 24984054 nitro Organic Remediation Others NA Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2357.2833 4661.6972 3762.9703 87074.4303 3070.0622 6170.7461 16602.7947 4569.6856 88703643 vgb Virulence Antibiotic resistance Degradation Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 3207.1792 845405 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Gonyaulax polyedra superkingdom:Eukaryota;class:Dinophyceae;order:Gonyaulacales;genus:Lingulodinium; 3009.225 5030.8614 5837.2438 4428.3593 6001.9939 3011.323 2686.1568 2475.4352 3322.3127 4784.0516 269839378 chrr Metal Homeostasis Chromium Detoxification Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 2644.3782 75155.6428 5180.9685 8628.9656 8628.9656 5793.0699 4957.9228 5529.0412 6594.2749 5319.4258 256420221 terc Metal Homeostasis Tellurium Detoxification Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 4472.523 98750.5241 7380.7863 1908.8775 2578.2383 335350791 amyA Carbon Cycling Carbon degradation Starch Lactobacillus salivarius GJ-24 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 4278.3186 56329.8535 327310314 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 2639.7053 3868.4608 70221.4508 9858.563 1993.5888 1993.5888 15739.3838 6568.8331 4165.2191 5342.0229 6891.3659 1873.1234 2591.8151 2881.4713 2047.4415 4693.9498 221572145 amyA Carbon Cycling Carbon degradation Starch Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 2556.9784 374333037 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 2927.3188 85945.0925 4163.1748 3117.369 3117.369 6689.0684 2580.5949 17305.0502 7458.656 17088.253 1902.6319 3342.0581 260434382 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 8109 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4102.3185 5602.3943 5227.5055 4721.0892 88997.5004 21903.8042 8355.8321 3091.7177 315588888 terc Metal Homeostasis Tellurium Detoxification Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 2082.3766 5190.0055 3034.4097 5186.822 1879.0044 1879.0044 6009.9852 6106.4479 3826.5535 5627.5714 3543.4424 44602.2233 2400.2295 7090.5583 109454353 exaa(moxf) Organic Remediation Chlorinated solvents NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 9604.0923 4636.8468 4636.8468 15444.2752 2371.2018 150385379 ara Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 3760.2301 8584.613 3596.6888 3438.9222 3438.9222 5777.8393 167221 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Cochliobolus carbonum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 4597.305 326906897 cda Carbon Cycling Carbon degradation Starch Streptococcus parauberis NCFD 2020 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parauberis; 2698.8408 307153095 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3040.1884 3300.9936 66090.3742 3823.0248 6055.3178 9840.6916 2138.1018 2138.1018 6847.7134 4268.5604 2856.4374 9470.6228 8590.2355 3533.0638 2591.933 3337.6573 5683.6676 225167756 nrfa Nitrogen Dissimilatory N reduction NA Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 2592.1238 340554237 pgk Carbon Cycling Carbon fixation Calvin cycle Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 2912.092 2060.634 10373.3571 4550.0095 10679.1658 71772.4132 38796.3316 4295.6823 2739.214 3418.2947 14286.0024 5639.5494 1551.1604 3346.9696 9335.705 4856.2179 111918679 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2484.3284 10258.3705 5138.3641 4475.9827 2309.7003 6098.8528 2223.8345 3244.2967 3192.0582 21449824 exoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus barcinonensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2464.3001 3840.1973 6070.6923 2400.9705 91549.4111 4661.4802 6132.3706 4568.4623 9900.4201 7510.3567 5870.1181 6962.2201 10939.2615 3864.6279 9676.6424 2350.131 15722.7137 5019.4647 9459.6236 2256.591 5188.994 4425.8686 8372.1385 296811482 nirk Nitrogen Denitrification NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 2259.8128 9006.0401 354565757 Sir Sulfur sulfite reduction NA Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 4226.1782 323495488 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 17880.5921 8588.1769 8588.1769 4053.1485 5608.2229 422909779 nfsb_2 Organic Remediation Aromatics Nitoaromatics Vibrio cholerae HE-09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 2641.2923 4599.2098 4604.0817 3687.8977 6291.139 5828.448 4177.8228 4800.4525 7148.3727 2869.7412 11698.4821 5222.595 5813.7244 3920.6009 4107.567 4279.192 5333.5889 160347200 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2246.2677 112462919 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5346.5185 4983.9956 10070.8311 6375.3643 2735.7313 10655.125 4571.6835 4458.132 163260440 terc Metal Homeostasis Tellurium Detoxification Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 3711.2396 3266.3107 3068.2892 3295.7584 3270.2217 3270.2217 6691.4949 3607.3033 2703.3154 17611.4939 4130.7644 2531.0133 4524.5267 20803909 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium loti R7A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 3275.9064 4654.9433 3201.2115 75489.4148 8261.7773 6674.8985 5534.7256 5890.3837 5890.3837 9772.429 15514.4789 8638.4134 2906.5694 2956.6899 7424.7672 2882.9528 12874.5479 8146.8951 5687.87 2974.8955 3641.8678 3451.9425 4024.4242 5759.3181 335420057 atzb Organic Remediation Herbicides related compound NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 3300.9492 3414.5435 9483.1469 96143.8368 8446.0335 6233.1775 3094.2575 3094.2575 10753.6052 4817.0627 9762.0195 3198.3391 3316.5351 2223.8791 9738.5299 4491.8747 2118.2311 3930.8691 10493.6249 727418 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 2299.1876 4827.7168 4376.9078 23529.7016 91191918 cda Carbon Cycling Carbon degradation Starch Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 3030.3523 3973.4536 4744.2789 5966.1541 151559423 cysI Sulfur Other NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 3265.776 4051.3661 2416.8007 6815.3126 4431.9267 3277.3614 7026.9737 4871.0254 5446.203 4819.3152 2664.7337 8820.7616 2937.8451 19095.2219 4960.2063 7423.4672 3355.0057 3622.1373 4342.165 6854.7365 160357497 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 2526.7403 2613.6427 6015.056 3322.9313 3869.6744 2400.9382 2667.5241 2236.5791 4936.9806 91697165 catechol Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 2800.0527 2666.3146 60398.1258 5877.5801 3835.1249 3835.1249 4660.7784 5688.8932 8596.2993 2980.9631 229749363 cellobiase Carbon Cycling Carbon degradation Cellulose Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 2412.451 6305.3536 2555.3203 2555.3203 1809.9417 3500.1194 218130315 amyA Carbon Cycling Carbon degradation Starch Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 6354.1429 5361.5315 32260.5902 326695516 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 3153.6372 10597.1557 2052.3268 7316.2281 8373.8726 3077.6048 3613.6136 212539350 tfda Organic Remediation Aromatics Chlorinated aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 5321.3612 14839.1936 56892.3702 1959.1065 1959.1065 6629.1641 4552.7083 5532.9997 4572.6022 9758.0586 4279.7589 3036.3269 5361.3686 3097.4112 4553.5297 296030733 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 2524.6729 3782.784 3072.3004 339624330 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Fructobacillus fructosus KCTC 3544 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Fructobacillus;species:Fructobacillus fructosus; 2225.9482 3932.6272 9425.861 58201092 tdnb Organic Remediation Aromatics Other aromatics Acinetobacter sp. GXA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2101.4974 2723.0224 12440.0061 81801.0026 3502.1855 5545.4014 2463.1071 2463.1071 5874.5524 11799.0429 4310.4596 2992.6879 3272.0306 5019.5868 158333650 sqr Sulfur Sulfide Oxidation NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 2398.3783 4035.7002 3195.8156 62149130 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3639.3872 4892.8816 3382.1151 3424.8991 22294299 amyA Carbon Cycling Carbon degradation Starch Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 2337.5388 12235.664 4354.749 3507.3496 6845.5295 338973674 fccab Sulfur Sulfide Oxidation NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 6388.783 4523.4615 3778.9421 5279.4192 7744.0394 4279.3872 4162.4643 2914.781 1997.1606 5490.0642 340841595 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 10661.7929 5266.705 4291.681 194348561 arsc Metal Homeostasis Arsenic Detoxification Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 4680.0686 5042.2689 3604.4671 123974.0476 4476.1809 5114.8133 10454.7179 8186.3972 6241.0876 6637.5192 11548.5895 3213.398 5579.4447 5242.2234 13367.5971 9477.1438 6187.8209 3309.9398 3825.2909 12829.9955 3312.8228 255021572 sqr Sulfur Sulfide Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 3207.3395 55978098 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3013.417 2943.989 2943.989 34851.0934 11416.7364 14159.852 9074.2251 374324808 pme Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 2934.2312 3214.8876 4325.2691 6851.5878 3445.5819 2116.4832 2827.4944 116254674 lmo Carbon Cycling Carbon degradation Terpenes Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3133.2132 12487.4762 358243614 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia araii NBRC 100433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia araii; 3376.1248 2545.6175 3952.3334 2410.8442 2410.8442 4182.722 50990.8832 4543.6778 6780.9564 3484.9166 9046.9149 7181.0467 38569318 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. FL2 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 18465.9207 3630.8135 3986.9662 4236.7175 16210.3644 3859.7672 3859.7672 3790.1206 5573.4697 12697.1606 17740.5122 9600.9112 1827.5421 3013.0211 5791.1975 113252.0201 67901226 Sir Sulfur sulfite reduction NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 7150.8313 4005.1575 2065.1804 22293934 ppk Phosphorus Polyphosphate synthesis NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 3821.9229 196139.9093 26457.8733 3641.5099 10447.3048 158550.934 7484.8305 6721.0255 261416949 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 2560.2451 79266.6238 5653.2753 1953.5471 399540924 chnb Organic Remediation Other Hydrocarbons NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 15303.327 2325.6695 5002.7387 3273.3868 5772.0373 2420.3622 2420.3622 6724.5684 6525.4998 73282.5246 4148.1417 2846.9765 7852.7885 2096.6023 13310.6918 9638.1483 6801.4637 7431.2842 4707.3601 4649.3866 360584.9147 387878992 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus parasanguinis FW213 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 24106.965 5124.3119 2561.337 8549.7367 4911.9357 4678.4253 4941.572 2296.838 2706.9608 6853.0157 2048.9132 14518.0876 5487.1899 2558.1062 3706.8621 2958.4781 377831015 ppx Phosphorus Polyphosphate degradation NA Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 7191.8776 3137.3346 3993.5678 74879.1701 5086.7252 5016.8342 2967.2984 2455.363 3371.4977 3308.5208 2452.1426 319437705 xylj Organic Remediation Aromatics BTEX and related aromatics Dietzia cinnamea P4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dietziaceae;genus:Dietzia;species:Dietzia cinnamea; 3690.377 3027.4718 4059.6106 8708.0508 2979.5789 45987.6186 8921.979 3942.3335 3644.9533 13371.6575 118072564 arylest Organic Remediation Aromatics Other aromatics Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 6234.9638 3808.9164 37912031 hcab Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. P200 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2892.623 4580.6204 4848.0562 6249.9408 9110.7182 5950.8021 5085.9875 2453.6189 2835.5967 13798.3081 4747.7451 6983.0553 2387.7208 3586.603 8062.3339 256848586 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus coleohominis 101-4-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coleohominis; 3922.0209 3167.3296 3670.4046 3670.4046 5268.3798 365749818 narg Nitrogen Denitrification NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3613.9663 89512828 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6293.8144 7632.6165 3719.792 3010.4406 4454.2023 2268.7798 12043.6376 3617.8997 3717.3665 68164670 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4255.7907 3992.7572 7197.8781 4579.0462 2220.1934 2845.7868 229793172 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 24027.1484 4287.3882 7828.2037 3596.9153 4986.1171 4986.1171 26524.4614 19612.1964 9300.2054 2771.5488 4418.0161 26092.4146 8193.8948 7220.7315 6499.8164 2512.1945 225207847 amyA Carbon Cycling Carbon degradation Starch Coprococcus comes ATCC 27758 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus comes; 3721.7146 11196.5507 3882.5867 115492365 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 2226.4823 3651.8631 4575.1824 2535.2362 2535.2362 2267.0424 5080.3867 5116.5168 5225.964 2261.9343 2310.4583 5845.3141 2220.4437 5747.5431 381179197 mannanase Carbon Cycling Carbon degradation Hemicellulose Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 10573.9341 104207.4673 4608.2116 9439.9624 3793.4828 16209.8585 23791.045 22515.4983 5004.4298 3273.6033 307550684 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 2934.7556 227549495 mer Metal Homeostasis Mercury Detoxification Corynebacterium lipophiloflavum DSM 44291 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium lipophiloflavum; 3652.622 27789.3086 3609.1105 5472.0127 4999.493 4999.493 4656.9238 7127.0978 3873.7515 4764.4041 4761.6918 5629.5474 3938.4334 3825.4844 1715.1942 4814.2746 170724196 ppx Phosphorus Polyphosphate degradation NA Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2262.6182 2430.2171 2430.2171 182625.4134 11219.1256 4119.2669 6510.7105 355535448 cysJ Sulfur Reduction NA Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 14453.676 12439.3144 2715.7759 7483.9928 23205.0853 7644.7751 32189.0296 180613.6392 1747426 catb Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 2223.4243 6591.255 4570.5654 5657.026 2329.8177 2126.3867 3907.376 1628.5766 3787.8767 254039874 TIM Carbon Cycling Carbon fixation Calvin cycle Candidatus Liberibacter asiaticus str. psy62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Candidatus Liberibacter;species:Candidatus Liberibacter asiaticus; 2460.7793 319414016 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3254.1522 6939.5625 8219734.2061 5467.2702 4938.9107 9692.1852 4294.014 12914.6099 5456.865 2832.9004 7474.7798 3170.1402 351592049 pcpe Organic Remediation Herbicides related compound NA Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 2894.8019 3119.1739 5713.6223 6146.3252 3660.8709 4223.5232 6326.771 1977.4789 358754464 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 7186.6191 119499800 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 7083.0457 3401.4614 6384.9241 19138.4381 4209.9353 2092.5643 2092.5643 9095.8968 2392.8594 1921.647 4142.4902 118424352 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14904.2437 3516.3582 2843.8427 2843.8427 7178.5017 3081.92 320530429 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Selenomonas artemidis F0399 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas artemidis; 2324.1171 90416637 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 144822.7255 3057.881 2787.0907 2787.0907 2372.1049 117927811 endochitinase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 2251.0518 21234.3629 4428.2103 2141.9014 2141.9014 3892.6636 6175.3122 6319.4286 5932.3167 4010.3451 6767.5816 7943.2051 25555.9261 5790.0918 7613.8621 89113933 glx Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 4506.4132 5507.8626 43131.6111 43131.6111 5967.7706 82165.1608 7708.8258 9324.7107 2166.2452 7980.3331 5578.1377 169606025 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 3315.9679 89043253 xylanase Carbon Cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 2348.2601 4620.2036 14700.7012 2834.2459 2834.2459 3229.5779 5096.3747 12594.1538 18135.3647 13519.1837 3379.5226 15071.6979 88643171 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2893.1097 9212.4943 17871.4476 4570.5646 7514.4825 187441.5489 10901.6021 15020.2129 2803.3196 2803.3196 5264.5987 8800.9598 4955.403 5601.7108 16062.3015 7948.6001 4433.0541 10900.4048 6770.5064 6490.3328 2239.6398 5383.8759 5297.1758 3271.3602 116072215 nifh Nitrogen Nitrogen fixation NA Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 13349.6709 102763.2628 79778.7628 228271376 nirb Nitrogen Assimilatory N reduction NA Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 3044.0341 196166905 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Acidovorax sp. NA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 7774.5719 70491.3779 107612.7346 2395.2721 4430.8849 1863.3104 4512.4542 94470939 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4500.7387 5212.8175 226517240 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 3635.5098 2489.0504 4654.2473 4827.1618 15646.9749 15131.5075 5878.5236 5878.5236 10431.7646 5943.96 3833.724 12018.344 2286.7314 3338.903 3655.9545 322511778 aps_apra Sulfur adenylylsulfate reductase NA delta proteobacterium SCGC AAA240-N20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2961.2231 4288.5639 4006.5545 13330.3716 2510.2035 2510.2035 8106.9999 7759.9636 3870.7544 3474.9714 323366332 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2379.9827 4985.639 1807.6749 1807.6749 6456.6458 3638.1329 6617.8759 5354.5354 5257.5745 3371.2851 4149.4906 5287.654 47155102 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 4207.1577 3028.2129 50930.8517 3386.2835 6805.9428 6880.2401 9354.6692 2019.9535 374348938 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3425.5095 7580.8714 2997.8308 5865.4098 8620.39 102661.2663 5371.1102 4318.6283 7208.4116 3207.4796 3207.4796 3834.7499 14278.0395 5124.3298 7905.0998 5577.776 6306.242 2686.2056 2714.8614 4439.2938 32287.5489 6118.4311 3337.8009 4477.5045 3039.0339 2771.0131 6985.2785 257149522 ppk Phosphorus Polyphosphate synthesis NA Lactobacillus rhamnosus GG superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 2360.8351 3912.6846 59692.6125 7888.0442 4211.1807 3010.1321 7467.3651 2091.9123 2494.1862 5803.8984 306984663 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6152.9202 7211.1428 3946.4404 3675.8601 10086.4294 10053.8645 7157.5951 3699.7926 7151.6776 3255.7549 11813.3256 5345.7621 2958.8258 4337.588 5939.5547 295412615 chitinase Carbon Cycling Carbon degradation Chitin Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 5495.0121 2671.1287 60864.2185 4889.9991 3005.6731 3005.6731 9461.7149 5912.8707 4354.0985 5800.7649 5843.4629 3071.6965 6992.7112 2054.0116 16017.586 5856.4647 6958.9075 2659.2971 3770.1885 4087.1825 2374.7036 6023.987 414146473 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. ZWL3NT superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2025.557 2140.5822 2950.4536 7436.3373 5055.9191 2324.8367 5300.7159 9129.655 2633.0492 2144.1288 219667303 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 6564.2988 3424.4481 4508.5521 4561.2285 8797.6591 5288.7837 2642.3766 4810.1218 163761225 pcag Organic Remediation Aromatics Other aromatics Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 2748.7097 7425.3044 3961.8177 3587.7014 3745.6809 5266.1983 2506.2609 2506.2609 8072.739 6307.3681 2100.4367 2895.4876 5736.6437 10055.9485 16042.959 2066.3145 4492.3928 6306.1468 32283.9133 71555648 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas savastanoi; 6066.327 385204399 terc Metal Homeostasis Tellurium Detoxification Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23762.4186 8292.1668 3532.5522 11199.4179 95840.4237 18175.6791 18175.6791 5511.3138 2215.7979 5375.9017 5658.9048 6606.7809 3633.6779 4890.9086 298490909 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 46929.8513 10420.8662 37426.6338 324981173 terc Metal Homeostasis Tellurium Detoxification Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 4348.0652 40033.4429 721752.1654 9346.5424 4420.6274 86557695 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5944.5097 13684.6065 159029820 arsc Metal Homeostasis Arsenic Detoxification Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 17010.6718 11216.4189 3533.2297 22585.1671 2057.5876 2057.5876 3567.9981 7161.1999 5737.7659 169006789 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3239.6418 192764508 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3054.4958 404259651 one_ring_12diox Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 2872.1759 2046.0799 2518.7311 2518.7311 2652.6763 7873.8858 12238.1855 239506066 amyA Carbon Cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 2308.0759 3574.7974 4382.128 4236.1239 5161.8871 7647.2151 2347.983 6077.6453 9782.0886 6629.7394 2982.4366 3693.1448 5958.2444 261283565 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 29641.2435 2163.8661 12778.0023 5521.1584 4925.057 81096360 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 2426.5648 3099.0773 78994.661 4647.6047 11282.726 1982.5006 195953639 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 3288.7611 146327856 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 5478.8064 5302.9471 284073132 actin_Viridiplantae Other Phylogenetic NA Boodlea composita superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Ulvophyceae;order:Cladophorales;family:Siphonocladaceae;genus:Boodlea; 57825.7028 10889.1841 10889.1841 6458.6842 4020.7202 5053.9994 392286695 linb Organic Remediation Pesticides related compound NA Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 15053.5221 255263862 TIM Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 4418.0865 7070.0305 1917.9448 1917.9448 12663.4874 8593.5037 2064.9983 2327.1527 2922.186 4494.7653 6047.8721 36109.3446 3328.6536 2500.8877 162449078 mannanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 1980.7626 5993.843 315277972 cda Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 29511.175 99926.7155 302388827 chitinase Carbon Cycling Carbon degradation Chitin Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 3324.6801 4051.101 4737.7602 6689.2838 253780289 amyA Carbon Cycling Carbon degradation Starch Photorhabdus asymbiotica superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus; 285154.0043 6240.2164 39837110 catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2417.3641 2835.1928 2019.9436 2019.9436 5506.9654 27051.706 10138.469 2335.7359 4809.553 5147.2783 2785.4112 5641.3196 308213099 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 11542.3242 10675.5942 87147.9486 315251156 RgaE Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 2722.9108 4875.1573 2152.936 196229926 amyA Carbon Cycling Carbon degradation Starch Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 2958.827 299067540 cysI Sulfur Other NA Ralstonia solanacearum CMR15 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 6005.0535 12565.4932 4510.9981 3853.8749 5409.717 1857.1029 1857.1029 7192.978 3936.7896 17838.8724 3256.4878 2595.7682 8008.202 1846.1377 2912.8253 3344.2484 112462949 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2149.6226 10788.5842 108801214 arsc Metal Homeostasis Arsenic Detoxification Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 4260.1438 2369.7546 5191.6744 13053.9403 212556478 arra Metal Homeostasis Arsenic Detoxification Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 7182.6804 8416.4685 4194.1533 21435824 urec Nitrogen Ammonification NA Streptococcus alactolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 3766.8781 5037.4088 7595.2681 7595.2681 6684.9987 2308.3454 5459.9636 40823.9908 5062.1714 5770.1652 45247.1569 336295939 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 10057.8456 5130.0937 135310.338 4739.3105 84778395 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4479.734 78719.4057 17680.4231 253578436 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Ruminococcus sp. 5_1_39B_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 2221.2101 3396.5584 4882.1602 58166.0046 3570.8984 3474.9183 8247.8184 5890.0642 2992.8774 2630.3106 4771.463 4584.3554 2694.6778 3097.8766 2613.244 5519.408 379648791 arsc Metal Homeostasis Arsenic Detoxification Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 2134.7837 4365.3193 7831.1969 4523.6671 6329.3129 2364.2996 11773.6127 4468.024 2094.2849 3408.0802 3341.9868 8464.7909 89054066 vana Carbon Cycling Carbon degradation Vanillin/Lignin Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 2265.1098 3748.4915 2995.4465 397166954 oxdb Organic Remediation Aromatics Nitoaromatics Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 3284.6942 4150.2747 6967.6951 3564.1473 6590.3224 8652.4124 398308781 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus mojavensis RO-H-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mojavensis; 2115.7885 3627.1778 63603.6521 3506.6419 6371.9208 4419.2543 4995.2687 2689.6019 3353.0529 5833.9048 146188525 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2591.4197 3152.4247 4590.1763 123932.3114 13605.2744 3637.7415 67773582 phenol_oxidase Carbon Cycling Carbon degradation Lignin Hortaea acidophila superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;genus:Hortaea; 5745.0301 4057.2377 20142110 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 1852.9993 3316.9947 59698.9116 6825.5309 5424.5067 5463.7017 6330.9989 8058.7203 2866.0215 5526.0186 10510.876 5278.8834 1927.9752 2537.2397 2659.7007 6353.1733 114538573 amyA Carbon Cycling Carbon degradation Starch Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 4500.1658 11428.6337 21755.6642 4874.2329 3436.6975 9076.9533 6794.4873 3095.1274 30100.3711 154493865 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 2440.812 4282.4607 2516.0106 4159.894 3742.8086 3742.8086 4070.5204 6151.7023 2177.4802 7011.8394 2067.8875 7902.9104 5770.363 6074.4879 2893.4247 2729.9212 383185719 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus oralis SK100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus oralis; 2155.2899 383761029 ppx Phosphorus Polyphosphate degradation NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 15279.3261 160941399 xyla Carbon Cycling Carbon degradation Hemicellulose Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 6881.3864 5869.7923 4323.7546 163755398 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Kordia algicida OT-1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Kordia;species:Kordia algicida; 3055.3083 4023.8096 171691014 nagg Organic Remediation Aromatics Aromatic carboxylic acid Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 2514.9516 6304.4292 5504.2838 2746.428 153643.8075 4845.7684 6252.6799 5425.3578 6223.4768 5506.0427 5312.2143 11278.4874 6648.8482 2738.99 3577.4511 10011.5628 14892.2285 7025.8363 9866.9285 3966.2211 4367.6647 5217.4831 3588.6617 10339.9114 110279662 SoxC Sulfur Sulfur Oxidation NA Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 1952.9682 4967.7528 117993234 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 4729.8991 3619.7592 6758.2704 4681.5423 7372.2697 2963.3871 3062.5242 238015681 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2938.481 304392810 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 4503.9879 6639.9548 5638.1779 2762.2709 13624.978 3965.3363 85722.9755 2124.5171 4983.0035 9478.441 28852779 pcag Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 3228.7665 3954.9984 6639.7462 3007.9613 388456805 alkb Organic Remediation Other Hydrocarbons NA Fluoribacter dumoffii Tex-KL superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter;species:Fluoribacter dumoffii; 4299.3334 2557.9536 6129.5992 3377.8152 2409.8668 291561229 cda Carbon Cycling Carbon degradation Starch butyrate-producing bacterium SS3/4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 5080.821 2226.6045 3892.0864 5095.4344 253996655 arylest Organic Remediation Aromatics Other aromatics Methylotenera mobilis JLW8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera mobilis; 2232.0586 3485.4173 61475.0075 4560.9718 5384.3664 7753.271 4700.4437 3294.5957 37678284 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 9102.9826 40362785 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 4463.8887 6937.7011 2397.1832 27106.8152 2328.4741 7423.9663 7243.7852 3352.142 2471.3779 198251934 pcpe Organic Remediation Herbicides related compound NA Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 5563.9222 8095.4357 225212865 ppx Phosphorus Polyphosphate degradation NA Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 2579.4795 124261352 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 11242.1306 5350.9143 5877.2409 9138.6801 10754.9421 2516.3689 157679427 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2794.0577 10496.4837 9128.5743 3395.0329 2589.9469 2567.1483 384048187 terc Metal Homeostasis Tellurium Detoxification Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 2770.2717 2787.8156 88643438 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2089.5672 2488.5818 256577271 dsrB Sulfur sulfite reduction NA Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 2614.1698 10405.4569 227467166 tktA Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 8075.1977 12659182 nifh Nitrogen Nitrogen fixation NA Spirochaeta zuelzerae superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta; 10047.3344 61837.1131 4547.9296 3328.254 110598912 b_lactamase Virulence Antibiotic resistance Degradation Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 2352.4677 36792.0975 4855.6251 12549.7935 3901.1298 5399.8265 163740615 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 6902.9093 7085.7249 3760.1689 11118.8777 261284027 endochitinase Carbon Cycling Carbon degradation Chitin Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6737.2025 5351.3203 2739.7569 338812462 ppx Phosphorus Polyphosphate degradation NA Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 4911.0012 41616.6249 8920.9945 169837712 amyA Carbon Cycling Carbon degradation Starch candidate division TM7 single-cell isolate TM7a superkingdom:Bacteria;phylum:Candidatus Saccharibacteria; 12664.816 5946.2252 238877314 amyA Carbon Cycling Carbon degradation Starch Eubacterium rectale ATCC 33656 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium rectale; 1994.22 5641.304 293376915 amyA Carbon Cycling Carbon degradation Starch Turicibacter sanguinis PC909 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter;species:Turicibacter sanguinis; 21359.8464 43457.3558 2819.0737 91788120 ppx Phosphorus Polyphosphate degradation NA Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 3185.9849 4022.1572 15932.2847 1906886.0641 7080.2948 192242.7218 5053.5696 3100.2692 4900.2903 9912.1334 7686.8487 5202.8662 4139.1791 20040.937 6511.4268 390622917 rd Organic Remediation Chlorinated solvents NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 7309.8933 3825.4583 13516956 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Bacillus sp. TS-47 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5328.115 6225.8189 156630144 mmox Carbon Cycling Methane Methane oxidation uncultured Methylocella sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella; 1977.7481 10174630 alkj Organic Remediation Other Hydrocarbons NA Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 6579.9639 4548.119 1865.7352 86138011 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3024.2657 2894.4938 4833.0002 3950.8182 5077.8438 5077.8438 5667.758 4259.8681 4156.2302 5597.5421 2798.3276 4421.9976 8764.3985 3835.2127 3270.3285 2498.876 323388200 arsc Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5102.565 4151.925 4151.925 7798.3705 8082.4093 1732.7212 4655.512 91781025 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 2290.969 2015.7585 2015.7585 2550.4452 3448.3251 10274.4292 4057.6413 149358669 B_lactamase_A Virulence Antibiotic resistance Degradation Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 3296.7658 8967.4597 157011586 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 3177.3706 2891.811 2648.3464 255292328 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 3753.0367 12399.2236 70478.9445 7508.9925 3093.3988 5581.555 10098.0485 4049.662 395142059 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Propionibacterium propionicum F0230a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium propionicum; 2626.4245 2672.5024 4457.572 154707352 linb Organic Remediation Pesticides related compound NA Coxiella burnetii Dugway 7E9-12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 10889.0278 3789.9301 58701.9523 2958.4867 339055776 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8586.1778 15579.4158 3461.1114 155675948 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Rhizopus circinans superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Rhizopus; 5713.0921 14420.2742 33520868 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2593.5901 16562.803 5533.1416 5232.1836 6320.8277 1962.5343 4793.0825 3906.6603 2283.2437 121607891 tktA Carbon Cycling Carbon fixation Calvin cycle Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 15697.5853 12618.04 8274.1942 6930.6105 4122.5073 206079.5144 291418817 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 078 str. F0262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 078; 1945.444 6856.31805 15893.25715 10764.39835 6921.9662 6921.9662 4286.0817 5543.224 5010.7524 4583.7092 28682.13765 9507.36265 3101.9584 13348.97705 5562.9215 333367633 pgk Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 32421.3871 5149.3204 3618.8814 3618.8814 62149248 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2807.7034 2239.0129 91793424 chitinase Carbon Cycling Carbon degradation Chitin Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 4205.735 254462773 dmdA Sulfur DMSP degradation NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 2955.3603 2662.6177 9847.8333 220929656 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 2670.1881 5982.6601 6021.1414 324032479 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6589.0736 51255.7203 2910.8353 339291765 amyA Carbon Cycling Carbon degradation Starch Streptococcus salivarius 57.I superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 2416.4202 255322072 nosz Nitrogen Denitrification NA Campylobacter showae RM3277 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 28667.4221 14391.4434 383644421 badh Organic Remediation Aromatics Other aromatics Sphingomonas elodea ATCC 31461 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas elodea; 2339.5331 7729.4616 4042.6534 12428.273 24743.254 4614.1249 17070.003 3042.4307 386820134 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Joostella marina DSM 19592 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Joostella;species:Joostella marina; 1967.9041 118424452 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2564.2686 3740.8134 3715.7614 11936.4164 1625.219 5156.7143 85069184 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4563.4471 5276.2805 4527.4059 85832.5348 4380.2452 2364.1862 2364.1862 3155.4077 6747.2888 4387.5315 13907.1369 6141.9307 10714.2216 2353.1279 7718.1249 2173.9073 12144.2917 6840.0534 6528.4647 2813.1376 2843.2166 3465.8369 2818.0974 7887.9328 77176881 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. KB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 4834.4903 4102.2886 384086094 sqr Sulfur Sulfide Oxidation NA Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 2062.6199 4105.2412 75231.7286 4549.9265 3930.7066 2574.3368 2574.3368 3223.5766 7789.3873 3765.1023 4018.2649 6568.6625 3279.555 2866.2486 9927.9839 6119.2859 1986.9831 3186.3239 4559.8096 2980.9803 6452.851 359833134 chitinase Carbon Cycling Carbon degradation Chitin Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 2155.8373 2364.2042 104551.3348 5284.6163 359787976 cmci Organic Remediation Aromatics Other aromatics Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 5962.5001 345871319 APS_AprB Sulfur adenylylsulfate reductase NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 3338.2166 44437.3159 13170.0106 38194.0239 2682.3487 7506.8676 4695.5988 334271862 nirb Nitrogen Assimilatory N reduction NA Staphylococcus aureus subsp. aureus 21310 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 2368.5582 125861.6255 5320.1963 2456.9423 4690.2838 90023521 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 2689.0668 399520369 aln Organic Remediation Others NA Pseudomonas pseudoalcaligenes CECT 5344 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 2213.8536 67421.679 2569.9108 54526.8792 4617.9934 2532.576 2532.576 3053.8627 6467.7428 5209.6971 6860.9842 3671.0903 2703.7838 9834.2836 4784.335 6437.2288 15650.4761 6387.2162 4049.4199 3593.2924 9232.5727 116734399 nirk Nitrogen Denitrification NA Nitrosospira tenuis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 2133.537 3797.8986 147851373 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2319.1998 4743.7831 101400.7085 5294.4425 2627.561 377564089 terc Metal Homeostasis Tellurium Detoxification Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 2575.9055 64677.9192 3452.3133 2998.5696 7090.8338 7298.0634 2296.5259 4697.0165 4500.8976 189494705 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 4100.6476 3849.7497 3396.6234 79080.9725 3861.2767 6251.8665 5393.3636 4978.4816 3717.5178 2955.7005 2348.9409 11087.0675 4478.9381 6179.5294 1687.7683 3176.1162 4277.2164 239937271 xylg Organic Remediation Aromatics Aromatic carboxylic acid Paenibacillus sp. JJ-1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4727.0448 11183.6119 5497.0286 6372.7245 6372.7245 43774.7337 12501.2869 4366.9555 32307957 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2106.2975 4173.3274 3234.6854 6563.4734 3332.5831 4166.6662 4795.1163 1587.3681 4770.4541 226346722 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3062.8311 13227.2097 130586.3308 7792.3504 3699.4597 4186.6401 4186.6401 121542.3529 9646.2029 284888.8881 7154.9729 4235.6903 10637.5648 67569.1721 9368.1361 4285.5078 5276.8206 1972.6824 3820.126 3664.6135 10952.2112 91683424 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2561.7257 5124.3666 17355.2695 4418.0553 6964.141 11921.9647 8740.9817 6486.4207 3040.0393 5331.0582 38291.7083 6341.1336 13436.0464 2409.8727 5147.2953 11342.2923 407256479 bphd Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 2071.9565 3598.768 54778403 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2483.8296 10787.3129 13584.1094 9774.995 67915005 rubisco Carbon Cycling Carbon fixation Calvin cycle Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 5969.0681 3783.2932 3783.2932 3156.385 13690.6522 3207.1657 118424533 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2554.4492 5282.5575 4487.0075 7689.424 5419.4622 376385956 xylanase Carbon Cycling Carbon degradation Hemicellulose Klebsiella oxytoca 10-5243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 2783.5392 2761.6882 149245016 Sir Sulfur sulfite reduction NA Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 6089.3667 163736117 soxY Sulfur Sulfur Oxidation NA Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 5125.0987 3367.7266 7796.299 4183.38 95356.5959 7472.7073 3952.3219 3952.3219 4566.5155 8906.9524 7335.5464 16534.7952 3969.6254 33156.4948 18384.1516 2664.7171 17818.2768 6143.142 10382.8789 4120.1825 5377.1807 5754.0576 3455.2885 6870.0429 395235689 terc Metal Homeostasis Tellurium Detoxification Enterobacter sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 3963.1979 11632.2873 7049.446 5957.5442 345020808 xyla Carbon Cycling Carbon degradation Hemicellulose Ornithinibacillus scapharcae TW25 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Ornithinibacillus;species:Ornithinibacillus scapharcae; 2222.3409 4584.2431 5941.0226 4742.7686 4594.2573 1742.5403 2842.6154 2277.4197 5775.912 54025831 terc Metal Homeostasis Tellurium Detoxification Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 3059.4682 2622.8066 2622.8066 5090.7057 4466.8335 374609919 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 9431.6802 5069.6913 3441.4608 3384.6797 3078.0816 171688044 endochitinase Carbon Cycling Carbon degradation Chitin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 120375.2948 6597.7814 12667670 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr648-20 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 3823.8686 4919.5582 4887.0134 6948.4478 6948.4478 4613.4071 3833.1484 6911.8681 10632.1782 7507.2785 32209.6086 2659.9594 3799.0115 6913.3358 16960.6968 7679.6085 374587186 rubisco Carbon Cycling Carbon fixation Calvin cycle Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 3496.4239 8546.415 2345.1969 6320.2545 16179.4184 3144.4936 238783400 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 5233.7107 316895707 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 5_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 3090.3302 2604.06 9592.4586 3821.4938 4056.2211 84386990 alginase Carbon Cycling Carbon degradation Alginate Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 3933.9167 387785761 amyA Carbon Cycling Carbon degradation Starch Streptococcus mutans LJ23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 14714.1368 46307840 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 60143.4989 315612443 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis ATCC 49296 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus oralis; 5904.648 27379682 nira Nitrogen Assimilatory N reduction NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 2961.8397 8212.8399 4144.5568 4638.0515 4930.4255 2255.0814 3187.2159 359311053 nirb Nitrogen Assimilatory N reduction NA Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 3716.1919 5392.266 2754.5108 6688.1691 4373.2082 5533.9938 12363.1028 3476.988 6117.0261 15889.1165 5047.9513 8338.4192 3901.2584 2967.0085 357383169 catechol Organic Remediation Aromatics Other aromatics Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 5032.3542 5728.8258 6403.3653 2827.4067 6536.0771 2182.2558 25717.5658 343799306 fccab Sulfur Sulfide Oxidation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 6297.1508 5262.1665 7222.744 3305.4069 3056.544 225593114 ben_bcla virulence NA NA Fischerella sp. MV11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 2426.9746 3190.0876 28297.9928 4919.5352 63727.3577 20532.4485 3859.2889 8948.6896 3227.1714 13996.8755 2767.902 51317.3764 281423916 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 2642.0406 407711375 tmoabe Organic Remediation Aromatics BTEX and related aromatics Burkholderia phenoliruptrix BR3459a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 2157.796 5148.413 151250 dehh109 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria; 2276.6066 2927.7291 18159.0676 5625.6749 81561.2884 8241.25 4260.8963 1538285.1623 13722.637 32457.7212 7119.8274 1873.685 3108.7344 3465.3187 50084965 alkk Organic Remediation Others NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 20302.9164 49531041 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 24167.8419 2940.1494 71906844 ppx Phosphorus Polyphosphate degradation NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1993.5123 4258.8267 66764.1146 4085.4054 3941.6229 3158.7141 3142.9102 3479.6656 4624.2051 2621.7823 3051.4336 126207950 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Actinobacillus pleuropneumoniae L20 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 2651.4072 332653821 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruminococcaceae bacterium D16 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 3048.9914 81429249 terc Metal Homeostasis Tellurium Detoxification Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 2602.635 2221.9009 2852.7529 332286836 nitro Organic Remediation Others NA Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 8690.2173 4298.7071 154638 nifh Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 2924.5185 4116.8046 4116.8046 3873.5841 197087571 amyA Carbon Cycling Carbon degradation Starch Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 2525.9678 5032.7155 10239.5789 6679.9298 78762.2133 6255.5939 4613.3932 5950.5583 5950.5583 20774.8612 15251.0701 3380.6441 5229.9694 10004.1333 2113.361 8009.9043 13962.9263 5069.3388 2588.6296 5506.6208 378568360 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 3643.0782 3866.3583 11162.0903 3082.7045 2856.9472 8406.6609 301107476 xylose_isomerase_Oomycetes Carbon Cycling Carbon degradation Hemicellulose Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 3513.5637 2893.5123 4856.5378 2529.5316 5636.2518 36785326 nitro Organic Remediation Others NA Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 2673.9006 1044518.7065 2911.2385 2911.2385 4628.2347 9561.4209 4888.018 219549629 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3630.174 33862810 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6051.4926 3884.4821 22574.9037 1810.9241 90954629 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3870.7265 6944.3737 218540.1911 2993.7144 2993.7144 5658.3712 3184.2019 3759.5252 23039.9005 6367.323 7123.9455 2353.691 4761.7933 2626.8467 89952279 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 4671.7257 63256821 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 3764.5192 3504.8641 6339.0802 3822.6902 6755.8522 6755.8522 2778.4502 4609.0645 12789.3125 8296.2821 12395.9027 2952.4024 9265.297 4083.8944 5621.5656 2297.2778 5586.8825 126717240 nifh Nitrogen Nitrogen fixation NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8397.7696 157679477 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5063.4715 10471.0156 315600024 dehh Organic Remediation Chlorinated solvents NA Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 68347.7732 5588.7007 5371.4072 89351.4394 5558.3977 124408.9258 124408.9258 3777.3623 3376.8686 2902.0562 9204.3945 2754.2946 11768.6209 7838.2527 5795.6279 3222.8679 3061.4944 7656.7487 2700.9887 14546.6821 247542756 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 7433.6054 5540.8656 15021.5013 3973.3597 14780.1685 7371.5073 145572246 urec Nitrogen Ammonification NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 12421.9259 365846103 ppx Phosphorus Polyphosphate degradation NA Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 7919.6372 218169885 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2188.049 74435.6298 3313.4181 1859.0332 1859.0332 3100.4856 3824.4987 4297.0217 4087.1841 2528.5213 2810.399 3041.8594 5211.3818 2975.5333 3247.5979 319404777 pgk Carbon Cycling Carbon fixation Calvin cycle Bartonella rochalimae ATCC BAA-1498 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella rochalimae; 2286.1204 3159.6504 9837.7441 3726.9852 1785.1652 3216.6893 354956662 cmci Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 3636.7964 8125.8946 5572.6561 4579.2522 158272354 terc Metal Homeostasis Tellurium Detoxification Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 2706.9357 6229.4385 9322.9322 4968.3106 6789.0551 4324.0461 111071938 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 26408.1626 10102.1965 3568.7839 2475.1461 2475.1461 8920.0401 4052.0611 51456.7567 5990.2255 2151.5177 10053.351 5121.9481 1758.9454 3799.2429 5448.9278 13719.5521 257126091 amyA Carbon Cycling Carbon degradation Starch Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 3414.1497 4137.9612 2689.1493 239910301 apu Carbon Cycling Carbon degradation Starch Thermococcus gammatolerans EJ3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus gammatolerans; 3985.0626 7974.6485 95382.1929 268608533 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 8030.4425 356642845 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 3875.2975 4877.009 359777643 catechol_b Organic Remediation Aromatics Other aromatics Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 3413.5924 4309.2115 307605010 amyA Carbon Cycling Carbon degradation Starch Bacillus amyloliquefaciens DSM 7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 7607.6094 6290.0888 5497.6816 78712.2192 1876.603 1876.603 6496.1004 3735.9737 6411.9044 4761.5006 3937.808 7630.4698 2537.3805 3409.1219 46108462 endochitinase Carbon Cycling Carbon degradation Chitin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 2570.0688 4998.6511 1896.6361 1896.6361 2968.4237 6053.0294 2532.201 2701.1149 2092.7058 347754660 linb Organic Remediation Pesticides related compound NA Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 2038.7592 3422.0979 79492.1057 6745.4472 3038.4196 5731.6691 1835.9597 3420.568 238581698 glucoamylase Carbon Cycling Carbon degradation Starch Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 2203.6753 374922757 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3985.0098 219564327 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3311.1379 4081.2041 4311.0937 151937966 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 20939.6119 58169.8014 218157022 cysI Sulfur Other NA Corynebacterium stationis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 16782.5989 2817.8968 3527.3323 9048.2736 3472.1646 3222.6631 5307.3648 154154286 amyA Carbon Cycling Carbon degradation Starch Fervidobacterium nodosum Rt17-B1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Fervidobacterium;species:Fervidobacterium nodosum; 15416.2302 3285.1256 2410.8738 3731.3073 2366.9749 12861.3486 3507.1831 313675198 tehb Metal Homeostasis Tellurium Detoxification Marivirga tractuosa DSM 4126 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Marivirga;species:Marivirga tractuosa; 9433.3095 363413748 ppx Phosphorus Polyphosphate degradation NA Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 3671.7209 3384.52 3649.4694 61670.2228 5454.258 2003.6043 2003.6043 4848.2749 4297.3373 4375.9067 5959.7954 3746.0746 2122.3038 2779.3667 2687.5623 10990.0426 6064.4329 2729.4072 3754.3411 2783.8144 3211.1565 5205.7838 18160630 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 1864.3792 4743.0017 3860037 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Cycloclasticus pugetii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 3379.9915 6140.9277 8265.1309 3431.7533 116748489 APS_AprB Sulfur adenylylsulfate reductase NA Syntrophobacter fumaroxidans MPOB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Syntrophobacter;species:Syntrophobacter fumaroxidans; 2842.5233 3656.1624 6828.6636 68262907 cysI Sulfur Other NA Corynebacterium jeikeium K411 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium jeikeium; 2357.6096 4766.7577 65784.7799 10036.691 6779.7502 4605.2788 7259.5752 11486.5957 2846.6812 142852504 mer Metal Homeostasis Mercury Detoxification Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 2808.9329 6916.8054 4150.9763 332685877 RgaE Carbon Cycling Carbon degradation Pectin Melissococcus plutonius ATCC 35311 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Melissococcus;species:Melissococcus plutonius; 2251.4153 299148417 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 11575.9596 99977.1582 74136897 phdci Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 3027.9071 12149.5809 6016.8264 9102.6099 26278856 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3531.9283 294650768 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter haemolyticus ATCC 19194 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter haemolyticus; 173878.6642 299754595 cellobiase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 2216.5929 3377.2109 4844.8924 5290.733 9311.8684 2944.3142 3594.8531 2502.5811 255269598 amyA Carbon Cycling Carbon degradation Starch Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 2781.4034 3653.9282 3440.7479 181554.7803 4964.6688 3920.8533 2064.4458 2064.4458 7372.2066 4241.7358 3901.2986 6687.2093 2288.8196 2529.2995 7693.9688 2438.914 11349.4743 5881.9186 8732.3361 2971.7913 3529.8102 2740.0448 6528.5945 333734173 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 5489.3074 4085.3473 7385.0402 4272.2603 3790.6259 5188.035 6107.378 4649.4437 1860.0664 91712046 nifh Nitrogen Nitrogen fixation NA Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 3314.3871 19887269 dsra Sulfur sulfite reduction NA Methanopyrus kandleri AV19 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanopyri;order:Methanopyrales;family:Methanopyraceae;genus:Methanopyrus;species:Methanopyrus kandleri; 3406.3103 4954.064 14854.3029 2650.8957 2650.8957 6282.4932 10219.0079 7192.8679 3373.1175 73541204 bphd Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 3634.2766 298541705 pgk Carbon Cycling Carbon fixation Calvin cycle Gloeobacter violaceus superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter; 1926.5673 9363.5115 4244.141 9033.1867 151491.4782 6944.3611 32681.1299 4384.906 4384.906 7119.3084 4385.7135 4021.2215 9665.2356 4273.9209 21066.8655 4507.3904 9884.8023 20337.9353 17217.7374 4534.385 10125.7682 25174.9602 5210.785 5772.7147 253699415 tehb Metal Homeostasis Tellurium Detoxification Geobacter sp. M21 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 2769.4901 5387.265 61761.3087 13021.9504 2855.6701 2855.6701 9348.981 8707.48 19095.6776 4479.3894 6639.7643 3268.4564 260849508 nifh Nitrogen Nitrogen fixation NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 2573.1952 4120.8215 3187.7724 3949.233 4319.7232 2365.9887 3857.9052 3300.8843 241865967 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 2327.1033 3780.4575 5060.6402 3119.6369 3243172 bphc Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2341.245 3327.4292 2011.089 147849437 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3919.5713 3162.8188 2736.3458 124510421 dmsa Organic Remediation Others NA Shewanella putrefaciens 200 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 18385.6225 84684512 nosz Nitrogen Denitrification NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 2404.7814 3187.1278 4095.7819 5176.5883 28907.2693 424781675 nosz Nitrogen Denitrification NA Campylobacter showae CSUNSWCD superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter showae; 7422.7902 5487.0238 2962.359 3893.9995 3912.9138 10758.4145 10758.4145 15429.6833 4301.9848 3896.2665 32916.5789 9490.783 5237.7307 5216.6737 308737199 narg Nitrogen Denitrification NA uncultured prokaryote 2658.2203 7748.3809 4268.3281 8095.7696 4081.9446 22928.8645 2239.7797 5460.6511 4867.84 22307.3161 8184.4042 5332.7285 3166.2144 3872.842 3230.3319 11507.3863 77163812 vgb Virulence Antibiotic resistance Degradation Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 10869.7136 163846783 aoxb Metal Homeostasis Arsenic Detoxification Chloroflexus aurantiacus J-10-fl superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aurantiacus; 4122.7337 1652567 narb Nitrogen Assimilatory N reduction NA Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 2980.7621 114537094 nifh Nitrogen Nitrogen fixation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 2212.8478 3484.6783 5385.2132 6137.5549 6795.2247 2704.6277 2820.8332 6960.4148 385258306 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 3145.2059 46917280 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3217.4114 7252.0996 219965694 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2145.4842 3222.9089 4338.0306 8255.7691 4673.4663 6307.1768 4658.7845 1870.6124 227487199 ppx Phosphorus Polyphosphate degradation NA Corynebacterium glucuronolyticum ATCC 51867 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 20975.1498 3777.7795 169793448 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5027.3682 4539.2813 310799600 rgl Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum;species:Colletotrichum graminicola; 9135.7108 3142.7593 3349.8547 3798.3902 1997.8025 4442.9077 328528058 alginase Carbon Cycling Carbon degradation Alginate Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 4098.3441 2712.6568 8535.6994 14724.0874 57349.7257 3605.441 3605.441 6605.0607 6414.7844 8256.7938 18797.5894 3456.8036 2573.5656 1983.6673 304334976 amyA Carbon Cycling Carbon degradation Starch Prevotella marshii DSM 16973 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella marshii; 3969.8331 82521.1651 6785.4201 192361983 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 5294.4482 6729.5633 118891.5756 3674.1962 5178.7484 283788387 poba Organic Remediation Aromatics Aromatic carboxylic acid Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 88581.6148 3256.4587 407365499 tpha Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 2307.5992 72652.1758 1965.2267 238719045 cueo Metal Homeostasis Copper Detoxification Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 2863.3351 77378549 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2799.7098 135539.5137 3516.0242 2327.2902 389667257 ppx Phosphorus Polyphosphate degradation NA Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 3124.8268 11619.9313 9882.8898 223963942 cellobiase Carbon Cycling Carbon degradation Cellulose Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 3271.9372 70291.0668 5172.4027 6566.0722 6566.0722 2363.0539 17952.2951 3987.8594 1943.1478 126105491 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8530.1211 193160558 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 2149.1646 225698234 phenol_oxidase Carbon Cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 2077.4055 3792.0436 58701844 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas mendocina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3945.6564 2931.3672 146157002 cellobiase Carbon Cycling Carbon degradation Cellulose Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 17539.1789 4360.7471 5006.1582 5532.8578 3958.1589 3958.1589 11854.4963 3878.4285 9344.4517 4066.2232 9944.6875 7189.583 12718.3775 9544.5312 5231.4486 2494.9457 3860041 one_ring_23diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. W superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 2723.3248 5636.4152 3863.2912 6983.63 3336.2329 302413415 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 3458.1504 63038.3968 9361.2356 9361.2356 165877153 urec Nitrogen Ammonification NA Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 5191.1421 2567.8044 302036211 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 50412.5646 3681.3672 4823.0041 3586.311 94779.4299 5778.7477 2755.2904 2755.2904 9229.9062 4403.2727 5192.3348 2858.4719 9553.6777 4409.731 7178.0082 2812.5317 3392.1496 3463.5024 5403.8528 260076071 cox1_ciliophora Other Phylogenetic NA Euplotes minuta superkingdom:Eukaryota;class:Spirotrichea;order:Euplotida;family:Euplotidae;genus:Moneuplotes; 1962.9352 3214.1857 3260.8947 4380.8496 125745171 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 32015.5172 237625016 catechol_b Organic Remediation Aromatics Other aromatics Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 1937.5732 53549.9774 121698952 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 4815.2706 1987.7402 1987.7402 8398.6472 3847.5233 304343043 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 2228.2185 76260.3413 256039522 amyA Carbon Cycling Carbon degradation Starch Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 3381.6762 28974750 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 9097.811 3331.978 3613.0721 58198.8694 4126.6434 1763.9641 1763.9641 6205.8619 3609.4505 5121.8639 6399.2978 3002.6177 2473.4592 7015.6809 2256.7662 7373.0099 5275.0252 5578.0393 2872.3231 3093.9437 167780643 arsc Metal Homeostasis Arsenic Detoxification Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 2595.8001 327181184 mer Metal Homeostasis Mercury Detoxification Hippea maritima DSM 10411 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfurellales;family:Desulfurellaceae;genus:Hippea;species:Hippea maritima; 5605.0507 146217261 mmox Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 3504.8062 11498.8908 3864.346 260940000 endochitinase Carbon Cycling Carbon degradation Chitin Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 6229.6765 9187.5782 9187.5782 20749.1752 91783875 atzb Organic Remediation Herbicides related compound NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 5666.859 8118.4356 6059.9431 4197.5479 291197060 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5639.1647 22394.1434 364505645 hzsa Nitrogen Anammox NA Candidatus Brocadia anammoxidans superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Brocadia; 8374.1414 3637.7888 5729.545 5731.5049 2204.0939 3110.3163 2901.6594 269103584 Sir Sulfur sulfite reduction NA Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 2336.0268 237712551 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides sp. 9_1_42FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3692.8063 87130706 nosz Nitrogen Denitrification NA Sinorhizobium sp. PD 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 2692.9566 343460141 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 5174.8703 19582.0857 19582.0857 83632047 endochitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 6649.5326 8813.4068 7390.0221 28481.3911 2789.9215 2624.4699 16263.7431 261284586 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3061.2007 373551512 scnabc Organic Remediation Others NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 11081.7154 5288.0419 3848.5066 7561.8998 4140.3593 4666.5626 4453.4775 3344.4052 5713.5601 76803723 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6188.921 5749.005 3148.9197 11641.371 5522.9798 8266.2161 10698.1784 58021.8857 7381.7031 4335.8251 4259.6706 3927.2528 4481.2812 112463609 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13234.5266 5695.843 2678.3867 2678.3867 24912.0981 4048.8082 17824.2361 7152.5338 10078.0174 7470.9296 3342.1468 2343.4514 332377296 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6259.7431 8023.0434 5448.3088 162953938 amyA Carbon Cycling Carbon degradation Starch Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 7386.1569 3949.1878 3949.1878 24486.7622 254041784 mer Metal Homeostasis Mercury Detoxification Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 8286.6214 59655.5042 2130.1051 2130.1051 3120.0545 88784597 arsc Metal Homeostasis Arsenic Detoxification Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 4320.1725 2509.5329 2509.5329 22503.9999 4950.5623 32307883 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2879.4407 13529.3914 63247.7276 8230.4614 6313.5149 3340.5295 33162.5216 3290.5601 198253528 amyA Carbon Cycling Carbon degradation Starch Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 3920.0173 4876.5092 10812.6372 302671612 xylanase Carbon Cycling Carbon degradation Hemicellulose Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 4166.5192 126623237 FBPase Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3725.1594 4380.4708 398248242 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2566.2256 3214.9629 6748.9414 3496.5346 52531.0934 3132.688 8716.3747 1614.0812 2696.2691 3744.8669 157804790 aps_apra Sulfur adenylylsulfate reductase NA endosymbiont of Inanidrilus exumae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4827.4235 3611.9474 4865.3545 189439635 ppx Phosphorus Polyphosphate degradation NA Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 3744.2866 7575.339 4570.1499 2073.7603 1676.4548 9673.9022 326196204 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 2833.0275 5107.6413 4857.4194 62632.8133 3624.2661 2270.2301 2270.2301 2951.7838 5391.0432 4666.3132 4924.317 6100.9113 2219.5679 11433.3541 4657.0255 1846.4392 3095.6946 1853.0543 374413667 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2750.9982 80825.0231 2663.0031 2831.458 4872.0697 1999.4612 4772.4999 335436958 amyA Carbon Cycling Carbon degradation Starch Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 2385.0948 6039.7967 2694.9212 2694.9212 5681.5651 65516.7925 2769.2491 5082.1379 3339.7471 384515979 gdh Nitrogen Ammonification NA Corynebacterium ulcerans 809 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ulcerans; 18724.6558 7578.0119 7578.0119 288865602 b_lactamase Virulence Antibiotic resistance Degradation Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 2320.9601 1923.3526 1923.3526 2745.5638 325160922 ppx Phosphorus Polyphosphate degradation NA Haemophilus parainfluenzae ATCC 33392 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 2164.6738 5272.0258 374997587 bphF1 Organic Remediation Aromatics Polycyclic aromatics Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 2792.24 26944.6122 6997.6799 13681.983 11305.6598 126629957 catechol Organic Remediation Aromatics Other aromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 5808.1802 4356.1453 6233.2429 2479.9022 7933.6522 3162.8643 2914.8728 333973895 aps_apra Sulfur adenylylsulfate reductase NA uncultured Desulfoarculaceae bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfoarculaceae; 4294.5273 4120.5139 8877.6446 7393.7235 3481.3453 4807.783 4693.1088 7259.4464 3796.7844 3278.7695 2823.3885 307771077 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 19372.9346 3478.4361 3478.4361 2049.0553 154281185 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 2203.3787 304345336 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 4363.8471 6331.0745 385788350 gdh Nitrogen Ammonification NA Erwinia sp. Ejp617 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 2642.9473 10341.3987 81498.2477 5605.311 3840.0209 5216.0116 3553.4254 3058.0113 9856.5403 2688.8409 2887.832 91418.2574 77816302 nrfa Nitrogen Dissimilatory N reduction NA Shewanella putrefaciens CN-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella putrefaciens; 7431.3431 3604.7566 343918094 amyA Carbon Cycling Carbon degradation Starch Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 5334.6217 111034972 dsra Sulfur sulfite reduction NA Desulfatibacillus olefinivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatiferula; 2587.7384 12290.933 347548395 terc Metal Homeostasis Tellurium Detoxification Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 2079.0346 3654.9937 6474.2495 4444.7173 4022.5958 2297.1352 2164.9967 11871.7695 4828.8583 1843.5928 3214.8711 3086.9619 6105.9544 372267228 chitinase Carbon Cycling Carbon degradation Chitin Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 2479.4621 4242.0897 2588.4136 2694.1244 2694.1244 6118.5117 6456.0157 3123.8399 4300.9405 2524.396 3368.0733 4455.0645 312443156 nifh Nitrogen Nitrogen fixation NA Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 4673.1975 4768.3885 359348613 mer Metal Homeostasis Mercury Detoxification Owenweeksia hongkongensis DSM 17368 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Cryomorphaceae;genus:Owenweeksia;species:Owenweeksia hongkongensis; 7829.5589 89347256 sqr Sulfur Sulfide Oxidation NA Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5391.5908 9138.0535 2953.9121 229380808 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 6085.384 4126.2314 8858.6104 8858.6104 2024.4277 1601.1799 393724661 amyA Carbon Cycling Carbon degradation Starch Sphingomonas sp. PAMC 26605 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2434.0248 39251.5395 40695.5841 315221545 pula Carbon Cycling Carbon degradation Starch Streptococcus anginosus F0211 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus anginosus; 2221.5609 94968530 amyA Carbon Cycling Carbon degradation Starch Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 4044.9944 4012.6423 4012.6423 5127.399 5393.0599 4663.556 163781955 ppx Phosphorus Polyphosphate degradation NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 2656.639 192764334 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2334.2184 4279.5091 2845.8788 13350.2173 14007.9998 5681.8355 5537.1444 2703.6921 6460.0296 2710.3952 5059.457 7227.6733 2518.2172 3632.2077 3784.3661 2568.0729 6349.0692 336011166 ara Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 2361.0601 70324.0619 4689.3113 121710110 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 2115.9182 5236.62 4887.8495 2845.6777 8928.1908 5270.7662 7177.8346 2020.8618 4007.4541 3097.0348 3123.4855 408417614 bbs Organic Remediation Aromatics BTEX and related aromatics Desulfobacula toluolica Tol2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 3954.8012 2267.0876 2267.0876 46115128 pme_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 4096.7119 2423.2085 6006710 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 2145.8882 3110.4638 213951820 ppx Phosphorus Polyphosphate degradation NA Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 18275.6128 3267.5134 16088.8466 13909.9674 294474353 chitinase Carbon Cycling Carbon degradation Chitin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 2596.9993 128168.6496 42416980 phenol_oxidase Carbon Cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 2717.0395 56144.707 3482.443 5664.3532 3127.3537 6456.7289 4131.0564 3919.1885 2633.8497 3139.8682 8886.354 3031.1938 8548.186 22471.1747 4811.1559 91183740 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 6705.9685 260175067 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3970.224 209500592 thl Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2923.9744 7129.3686 2989.2199 542985.1117 8627.1507 5406.4758 14753.8123 54148.939 54148.939 5324.3135 3455.1396 4613.4015 8150.3233 13614.565 4073.5712 8799.0364 6709.2317 31116.2477 6617.1391 6372.157 1976.4574 3558.125 5266.2137 116061980 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11222.4909 14282.723 14282.723 9954.6025 3316.501 10692.53 3257.6338 2373.1454 170295863 glucoamylase Carbon Cycling Carbon degradation Starch Thermomyces lanuginosus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Thermomyces; 5431.6846 258526098 dsra Sulfur sulfite reduction NA Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 3248.2085 2886.2147 6641.1543 3703.9298 2225.458 8881.9684 3046.2381 9970.3071 3335.2593 299756218 RgaE Carbon Cycling Carbon degradation Pectin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 22404.9512 3545.726 3545.726 5113.0474 288315538 Sir Sulfur sulfite reduction NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 5243.3916 83005.4849 4682.9109 4031.4431 6231.4633 3811.0577 4364.4296 5336.1343 7300.2064 1888.0735 2800.2623 262376792 xylg Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 11162.0703 119800.1853 3011.5238 8452.3694 9651051 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 2326.39 114767015 SoxB Sulfur Sulfur Oxidation NA Pelagibaca bermudensis HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 6040.7949 3606.9788 2763.4527 4295.5048 5986.7981 4835.8471 4153.3188 3510.3918 2348.4105 4853.1588 5102.5557 3057.7345 3822.8345 2589.8675 5193.2557 145236419 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 5037.4721 3267.4018 5122.1389 2210.1484 4587.3185 148871091 cellobiase Carbon Cycling Carbon degradation Cellulose Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 2285.1602 3491.6973 112134.2503 3921.8755 3129.7174 73147.2947 73147.2947 6836.5005 2675.4343 1976.6717 5708.8921 350562507 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 2043.6127 332764.0126 6980.7845 2103.2041 2841.9591 11700.693 11586.8804 91780395 chnb Organic Remediation Other Hydrocarbons NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6005.206 6689030 linb Organic Remediation Pesticides related compound NA Pseudomonas pavonaceae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae; 1964.909 2918.731 8377.7847 3106.745 3106.745 2044.3362 149200303 endoglucanase Carbon Cycling Carbon degradation Cellulose Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 156430.8251 2794.3084 347367357 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 2123.37 9019.209 67784232 amyA Carbon Cycling Carbon degradation Starch Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 2164.0699 4739.4867 5759.7035 103718.5882 3279.004 6184.4592 4522.6962 5378.7906 3161.2378 3344.8534 10176.4369 2473.0689 3470.3732 112463831 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6630.1433 4764.1074 17247.6682 7888.708 197782088 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 4153.3229 2506.7 5920.7376 5037.7943 3108.059 209527034 bphF1 Organic Remediation Aromatics Polycyclic aromatics Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 14900.2938 5167.9118 3439.4795 11380.9759 4783.9391 3074.2453 3074.2453 8829.5754 6156.8031 13705.0777 4895.3681 14506.989 4523.1257 5715.3685 2622.1825 5022.8912 4603.5469 5934.9237 302306706 protease_serine_fungi Carbon Cycling Carbon degradation protein Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 3443.7894 302386510 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 5943.7159 12131.9186 13704.1266 307354501 dsra Sulfur sulfite reduction NA Methanoplanus petrolearius DSM 11571 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus petrolearius; 2354.9533 4702.2914 5319.1603 26280977 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas syringae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2704.1918 4198.0806 4382.3157 4253.5591 4253.5591 6489.1844 4110.2858 12469.5492 17943.3285 315649444 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 18129.1586 3685.9806 25748.6022 5894.4526 346917934 chitinase Carbon Cycling Carbon degradation Chitin Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 2775.3479 15623694 dehh109 Organic Remediation Chlorinated solvents NA Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 7939.2738 22323.3275 329889523 alkk Organic Remediation Others NA Brevundimonas diminuta ATCC 11568 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas diminuta; 11667.9754 2930.7978 5649.3197 3177.1139 3177.1139 9632.1136 3298.697 4144.801 12439.2838 3746.175 2774.6807 11476.8245 2982.4439 71383726 nasa Nitrogen Assimilatory N reduction NA Synechococcus sp. UW105 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5144.119 101008.4911 4930.8737 288554888 urec Nitrogen Ammonification NA Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 10602.9763 116125022 ppx Phosphorus Polyphosphate degradation NA Leptospira borgpetersenii serovar Hardjo-bovis JB197 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 2648.0671 162072853 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5730.98 6164963 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces thermocyaneoviolaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 17744.429 8664.2823 8664.2823 3191.6989 6958.4627 3471.1907 4628.2622 2021.8843 3190.785 2382.1439 4850.1872 6836.2073 3763.2442 5025.671 3885.8664 213952711 amyA Carbon Cycling Carbon degradation Starch Corynebacterium amycolatum SK46 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium amycolatum; 2160.5361 4382.7502 57552.757 7630.1339 7163.3965 3066.7174 10508.3778 3942.2782 13723.0684 2068.6114 3346.92 5279.9284 3800.9014 325964816 amyA Carbon Cycling Carbon degradation Starch Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 2320.0667 13590.3078 8968.6305 255930981 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 7558.1109 6105.9529 5444.1143 2414.4076 2414.4076 5592.2103 6071.4134 43624.8784 7807.6337 2423.0116 4056.4479 11520.3208 284447594 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 3860.0997 254487561 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2437.7891 6794.6777 13798.0656 6429.57 168935.9586 6915.6321 5576.7985 284042355 chitinase Carbon Cycling Carbon degradation Chitin Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 2803.7846 6892.1818 2663.6644 123002.0737 3627.1347 6373.7352 7807.8483 5508.8378 4263.984 5511.1166 2063.5182 4217.8301 5298.6936 5889.633 308231057 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2613.9835 356690783 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2955.6528 2452.2681 2367.3002 4341.215 300762612 terc Metal Homeostasis Tellurium Detoxification Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 2073.9205 4349.7537 48056.5702 3145.7651 4905.8378 89369.8847 3327.4786 3440.8567 404401083 pcag Organic Remediation Aromatics Other aromatics Pseudomonas fuscovaginae UPB0736 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fuscovaginae; 3480.8734 3746.9875 3594.6432 3829.2478 323491216 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 7552.3407 5238.4118 197627085 nasa Nitrogen Assimilatory N reduction NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 8733.6191 4308.8397 5122.4662 2215.1995 2215.1995 8123.2652 4791.4672 2697.1796 10889.7309 15403.5392 4441.1177 326575818 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Moraxella catarrhalis CO72 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Moraxella;species:Moraxella catarrhalis; 8021.6689 4730.9981 2287.7625 4599.227 9644.5648 3333.4242 3685.517 6247.0598 2226.4048 4242.0028 3112.02 2280.8876 291538880 xylanase Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis XB6B4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 2780.6584 4397.0138 3700.6793 5499.1949 12436.8315 92109558 arsc Metal Homeostasis Arsenic Detoxification Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 3465.175 300654680 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter vulgaris superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 2464.6394 160917530 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2340.6651 2858.5121 2858.5121 5522.7549 3835.873 2328.078 5526.4071 4933.0365 1826.341 2733.1694 75993815 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 9686.8275 4253.8547 260773864 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 2097.7996 3108.6096 2040.2026 2040.2026 393720357 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingomonas echinoides ATCC 14820 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas echinoides; 3228.761 9060.3121 7724.9633 12781.5089 356690409 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4879.9636 4147.048 4439.6215 21599.2788 3819.5653 1955.6566 2702.6647 283559495 arsm Metal Homeostasis Arsenic Detoxification Rhodomicrobium vannielii ATCC 17100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Rhodomicrobium;species:Rhodomicrobium vannielii; 88611.9568 3680.0615 35322.1719 2881.8953 146307605 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 5067.0704 21258.2065 5162.127 18752.4044 4073.6376 5138.6752 3920.6009 2465.027 17491.1163 125715467 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 8017.6457 2815.8423 3529.2786 9103.9311 4369.485 2204.0318 2204.0318 2794.402 6743.4379 4000.5495 3676.6007 6372.4174 5329.8918 3461.2917 5833.4335 2786.2032 12409.8168 5113.1305 2352.3291 3915.7782 5670.3495 1910.9664 5925.0154 374621033 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4757.4084 258575935 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 2673.0951 3320.7711 5100.0828 3410.483 3394.6116 3394.6116 2779.8226 6834.5503 61697.9645 2867.4485 29018.9471 4138.5748 4697.5293 5062.7633 399769557 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 18856.0179 2531.4503 2531.4503 8143.3911 3537.3306 15326.4619 302527765 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2489.7653 6535.8181 2518.7817 6540.1284 4963.8274 6443.5401 12986.0203 5411.8694 3818.3513 190685171 mannanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 3503.5175 4686.6793 347530540 amyA Carbon Cycling Carbon degradation Starch Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 2427.584 10453.6966 20710.8354 3792.1935 33320459 dsra Sulfur sulfite reduction NA Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 2109.1204 15428.7634 2506.8069 4309.4177 1840.1108 4465.3403 284165186 linb Organic Remediation Pesticides related compound NA Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 2483.4163 126728919 ppx Phosphorus Polyphosphate degradation NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 2283.1264 7594.1499 341641288 cda Carbon Cycling Carbon degradation Starch Vibrio cholerae HE-09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 4579.2127 7923.6543 2272.6348 2272.6348 3871.1309 325155773 B_lactamase_A Virulence Antibiotic resistance Degradation Enterococcus casseliflavus ATCC 12755 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 3355.9476 19570.4711 7047.1155 4764.1653 291200600 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Erwinia amylovora ATCC 49946 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 4385.6567 34335349 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. ND6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15174.0341 27657634 chne Organic Remediation Other Hydrocarbons NA Rhodococcus sp. Phi2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2833.3221 10223.6721 14990.952 229817064 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 33504.3279 5901.2379 6403.4847 4294.6173 24561.3424 12725.0131 5620.4501 5620.4501 3171.2649 4404.9213 10647.2743 3014.6485 2616.8549 87918.9968 47221.6013 5418.0263 7536.6435 3079.0168 8127.2541 381166721 ppx Phosphorus Polyphosphate degradation NA Phaeospirillum molischianum DSM 120 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Phaeospirillum;species:Phaeospirillum molischianum; 2680.5965 21178.9858 4791.55 3782.2337 7706787 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Umbelopsis vinacea superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;genus:Umbelopsis; 20744.8027 4839.8251 336029060 ben_bcla virulence NA NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 3448.981 2284.9349 5259.4766 323344594 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oralis ATCC 33269 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oralis; 3220.4854 2889.6076 33320483 dsra Sulfur sulfite reduction NA Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 3586.4789 349585771 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2756.1287 11480.6981 12224.4131 373856314 arsc Metal Homeostasis Arsenic Detoxification Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2238.4376 288543890 mcra Carbon Cycling Methane Methanogenesis Methanobrevibacter ruminantium M1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobrevibacter;species:Methanobrevibacter ruminantium; 7714.9107 15991078 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Kluyveromyces wickerhamii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces; 3181.2969 358239945 arsc Metal Homeostasis Arsenic Detoxification Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 1990.122 12667618 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr610-29 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2455.696 4934.0795 85322.2693 23022.2376 23022.2376 3957.657 407427914 dehh109 Organic Remediation Chlorinated solvents NA Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 24217.0298 380768662 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 4644.1252 383755568 dsra Sulfur sulfite reduction NA Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 2738.0983 60375.3493 8833.9806 50541829 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5069.1536 7888.6152 16467.9958 9433.385 15854.5253 127688.6416 384214867 xyla Carbon Cycling Carbon degradation Hemicellulose Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 10817.2934 7328.1498 64929.5186 3395.2678 12906.8117 12906.8117 9443.6219 6560.1174 32077.2715 2930.0045 2482.4267 4271.7797 237500028 mer Metal Homeostasis Mercury Detoxification Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 4887.6778 184199397 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 2152.0851 3496.7324 2134.8039 2134.8039 39270.0208 25516.1674 6148.2126 81941.3061 106304.0172 5043.669 2141.209 4265.2751 336392201 atza Organic Remediation Herbicides related compound NA Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 7970.1943 5024.4127 6470.6939 21901.3686 3694.7838 3163.8301 46307906 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6426.7723 6678.6824 1903.5692 371762569 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 4860.2981 192764346 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2177.039 5364.5493 5342.3158 6621.1623 6621.1623 4826.0935 13424.6107 4629.9716 3106.2291 7779.3691 2299.8605 3144.5139 3948.5991 3397.2721 312792424 mannanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor kristjanssonii 177R1B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor kristjanssonii; 2537.9593 193161012 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2490.2644 64879.8687 3902.5807 392843936 pcpe Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 2116.2685 4394.8702 7672.3599 3353.5622 4368.8814 5305.6628 7861.4129 4810.5898 364569746 chitinase Carbon Cycling Carbon degradation Chitin Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 5950.5508 3852.1796 4451.1308 11384.5004 18954.328 49239849 ppk Phosphorus Polyphosphate synthesis NA Bartonella quintana str. Toulouse superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella quintana; 2090.6622 3896.0194 4439.9709 111348.6839 4338.845 5607.1851 3438.1218 7985.552 6692.9523 5169.728 4574.8288 2831.3419 5783.5437 3086.3399 4637.4745 5396.7501 1909.8882 3376.714 3177.7791 2433.4354 94967272 amyA Carbon Cycling Carbon degradation Starch Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 3119.155 4677.8244 2354.3812 2547.8277 16977.9953 392540746 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas piscicida JCM 20779 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas piscicida; 2006.4264 58259349 amyA Carbon Cycling Carbon degradation Starch Cryptococcus neoformans var. neoformans JEC21 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus neoformans; 1925.9816 6663.9343 332336705 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 6950.3764 7292.9741 343497930 terc Metal Homeostasis Tellurium Detoxification Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2334.5643 99083391 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2492.9462 57688.8519 27377920 nasa Nitrogen Assimilatory N reduction NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 14288.4702 9404.7179 3142.097 49684.4689 4389.4409 7319.6254 7319.6254 2778.9532 3660.2004 2772.8696 2307.6652 7124.6663 4590.3444 8690.6648 6813.9842 7275.6777 2061.9318 3735.7826 320451015 amyA Carbon Cycling Carbon degradation Starch Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 5365.7116 67900694 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2076.6464 254262254 amyA Carbon Cycling Carbon degradation Starch Enterobacter helveticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter; 3064.6523 14761.3305 372454497 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5418.2202 44412.8473 68467615 endochitinase Carbon Cycling Carbon degradation Chitin Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 5056.3642 366052469 terc Metal Homeostasis Tellurium Detoxification Lactobacillus suebicus KCTC 3549 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus suebicus; 2065.3537 88656498 mmox Carbon Cycling Methane Methane oxidation Methylosinus sporium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylosinus; 5158.3251 2831.8139 2831.8139 255106984 amyA Carbon Cycling Carbon degradation Starch Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 24910.5983 53804549 mer Metal Homeostasis Mercury Detoxification Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 2277.4253 3949.8876 336008962 ara Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 2881.8573 307770431 ppx Phosphorus Polyphosphate degradation NA Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 2952.7057 340775526 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes SK182B-JCVI superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 2232.6956 6722.1252 3750.5739 291582602 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 11503.9839 78543.4927 12177.5536 12404.3159 8997.7303 3103.6481 381157958 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 14662.6692 3446.2994 4416.3114 2837.8646 2441.1774 5440.351 1952.6248 149749817 nirb Nitrogen Assimilatory N reduction NA Vibrio parahaemolyticus AQ3810 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 152723.8915 2004.7276 1767.0649 2012.8055 6011.9448 169594974 glx Carbon Cycling Carbon degradation Lignin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 2137.6672 284507079 amyA Carbon Cycling Carbon degradation Starch Arthrobacter globiformis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5676.5139 374348792 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21098.9191 291580263 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 4094.4328 4404.7744 355382654 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 11610.193 4501.3532 6548.8555 12068.2169 96237.2292 8071.954 14723.0294 3155.1875 3155.1875 4958.6595 4994.9105 3820.2614 9540.5075 7047.3503 3434.9761 5375.5687 3038.1458 44789.1016 11164.5328 6539.3461 1612.5309 4372.3584 7093.0859 2443.1068 346994042 pgk Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 2868.0867 8600.0535 5571.9174 3476.1871 3728.5072 17923.6183 12005.4095 10944.404 2606.5649 3951.0763 3945.901 5398.8051 82791391 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4851.2273 5700.6294 2166.1799 2166.1799 4959.3613 4200.5574 3800.7875 4116.9839 8268.6676 3905.8805 7900.7484 153007680 urec Nitrogen Ammonification NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 8367.5205 5503.41 3165.1864 2534.022 10902.5646 4358.9276 2186.5113 350531935 cda Carbon Cycling Carbon degradation Starch Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 9891.3625 9852.6791 67493.7295 6362.64875 4905.9548 310794274 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 66766.4752 3163.5706 5663.8696 4943.8721 2846.5698 2846.5698 15429.518 2510.2426 121631.2324 12086.6769 90954655 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4609.0684 20121.7876 20121.7876 7617.7695 8695.0523 212531329 protease_serine_fungi Carbon Cycling Carbon degradation protein Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4751.6854 224026620 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 3490.7428 4412.1428 85690238 linb Organic Remediation Pesticides related compound NA Erythrobacter sp. NAP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 23342.8917 2096.4533 2096.4533 206229.3932 11675.8213 23385.0819 30208.5387 74462.3099 4721.0348 365827776 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 6921.6266 6425.7189 7537.8065 3150.842 3150.842 5026.7735 4730.2064 4300.2715 4431.5046 112462519 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9926.0761 81497.3994 46308010 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2759.4426 11277.5196 340533555 amyA Carbon Cycling Carbon degradation Starch Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 17374.6682 7703.9079 7082.8363 7573.4474 2666.6884 2565.4194 134890.373 4919.7481 1795.6415 2907.8028 5681.9819 330816408 tfth Organic Remediation Aromatics Chlorinated aromatics Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 2431.035 3737.4862 8258.4463 4267.4753 2058.0407 3098.341 19733.0826 300087405 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 5891.0114 3153.4199 14225.5777 2877.2349 323701254 APS_AprB Sulfur adenylylsulfate reductase NA Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 2341.8062 5456.9748 4591.451 4694.2031 2595.7328 4304.3878 6625.1795 213970534 pcag Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 3496.185 4456.276 2887.2142 34017074 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2358.3405 11476.9607 5494.5942 2851.7077 3473.3939 2583.4752 177842265 xylanase Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 4697.897 3636.5363 4748.7788 11703.7581 2850.2683 2850.2683 3395.19 6210.5295 6171.4359 2961.9562 6246.4937 9306.8955 6863.9741 6189.7287 2198.0266 2872.222 3740.1707 3425.7258 4942.1908 390442789 amyA Carbon Cycling Carbon degradation Starch Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 2143.6265 3500.9223 109452465 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2981.3867 7792.1157 2401.1148 2401.1148 4868.7416 13369.9345 4261.694 24421361 nirs Nitrogen Denitrification NA uncultured organism 2804.7251 12057.2342 46202050 arra Metal Homeostasis Arsenic Detoxification Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 3673.6621 4571.8811 4571.8811 17425.8703 392545937 tehb Metal Homeostasis Tellurium Detoxification Pseudoalteromonas rubra ATCC 29570 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas rubra; 2258.9128 2266.4752 225019680 ppx Phosphorus Polyphosphate degradation NA Clostridium methylpentosum DSM 5476 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium methylpentosum; 2553.2207 8243.552 6468.1257 12378.2037 10692.7755 5312.7163 1987.1405 3567.2184 91802026 soxY Sulfur Sulfur Oxidation NA Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 2320.5027 3620.8336 7875.0353 4722.8239 3927.594 5924.8921 6199.3775 3497.3384 5870.789 4276.8824 3697.3677 4522.2608 5901.9911 2184.8047 7758.584 4665.976 1677.6582 4935.8522 4308.2329 2614.8038 329916220 rubisco Carbon Cycling Carbon fixation Calvin cycle Oxalobacteraceae bacterium IMCC9480 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae; 7738.0682 62462.2813 4552.3227 4165.511 6769.7375 6099.9671 2083.1478 3308.6824 337263702 phytase Phosphorus Phytic acid hydrolysis NA Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 8966.2076 5379.8795 5611.9157 52200.1043 2134.2272 3473.5208 4616.6324 407748041 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 2337.5496 5115.8992 2780.975 2780.975 7707.924 76666603 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 69391.4945 4075.4856 9791.6422 7383.5962 5235.5947 13604.4694 2898.0665 3353.3963 118424407 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2138.5987 3202.9539 5161.6881 4595.5356 2936.4782 158313257 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2094.9806 6704.1348 20633.6406 6543.0478 4707.5371 254029700 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 1955.3212 3004.267 3004.267 3222.2291 6538.9167 5051.0483 335999449 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 2159.3726 2903.7606 11641.908 2721.6172 7661.7552 119671177 xylc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 4395.302 6061.8558 5236.32 4615.6882 4615.6882 8266.5295 261352829 pme_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 18101.9148 4638.275 3395.7125 3395.7125 3091.8965 3096.9585 2633.879 3735.3308 4252.7323 30248344 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 2426.4962 4575.9116 6938.3074 5417.5387 2318.9099 8186.9168 4419.0823 3852.4448 2411.7409 6366.2173 126636895 cysI Sulfur Other NA Shewanella loihica PV-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella loihica; 4283.7572 335999382 nbac Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. JS329 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 7094.1266 78189887 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 10507.6559 3049.9436 7902.3593 7850.7694 15835.0882 30134.4067 2400.2376 3466.3469 10714.671 2326.6059 2291.0633 328853083 phenol_oxidase Carbon Cycling Carbon degradation Lignin Melampsora larici-populina 98AG31 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 7021.8097 54231.8209 338823995 catechol Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 4438.9434 1828.5453 1828.5453 357596200 one_ring_12diox Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 2960.5358 2519.0538 2034.0424 2034.0424 8586.1745 2262.361 1727.9392 3298.3736 120326584 chnb Organic Remediation Other Hydrocarbons NA Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 2499.6068 4769.7831 8483.5881 334894377 TIM Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 3236.4967 6764.7613 3633.3701 2071.9992 2071.9992 5800.5618 3464.9599 5533.8614 4873.758 2667.4122 4419.143 67902302 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 6837.125 4871.8852 10677.8433 4036.1958 5242.733 6971.769 6193.9343 2967.0599 5374.508 340356928 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 9413.6669 4324.088 6241.3798 4090.2728 292658045 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2205.9737 7669.7476 3549.8545 6909.0991 84516845 phn Organic Remediation Herbicides related compound NA Loktanella vestfoldensis SKA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Loktanella;species:Loktanella vestfoldensis; 3752.8721 3656.8226 6518.7253 10233.023 28041.1324 1608.2093 3354.9927 32475809 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 2506.3579 3214.253 5944.6638 2791.3837 2967.183 242347882 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. BME-14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3013.6999 5397.3425 5163.0083 4502.6774 6001.9954 5776.4391 2153.1537 2153.1537 225758.5556 11393.3296 19334.5325 5042.6282 26647.3163 3282.2786 10396.7786 19123.8907 22797.2774 4055.0053 37049.6664 374326246 nosz Nitrogen Denitrification NA Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 3070.2328 350269622 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 6856.7346 6884.6952 6701.2896 115520800 amyA Carbon Cycling Carbon degradation Starch Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3908.2238 3975.6314 1940.8439 3015.6607 18313457 dsrB Sulfur sulfite reduction NA Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 5515.947 256423942 mer Metal Homeostasis Mercury Detoxification Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 2212.2571 6611.4815 359779788 nitrilase Organic Remediation Aromatics Other aromatics Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 211836.41 5410.1034 3305.5261 65228.6223 5189.9289 3890.5686 2925.0829 3984.9902 4879.7795 6421.3554 3836.5337 5042.853 3644.8365 7132.2732 237825468 phenol_oxidase Carbon Cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 2219.3103 2781.7458 2781.7458 6643.8421 1704.0603 342822682 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 7750.6214 5942.6645 3428.8466 3428.8466 7313.9871 5854.2475 2493.5123 6258.1012 5256.3397 17385516 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2135.8474 5344.7004 3650.8209 2594.2754 8159.5812 4146.9842 5894.3074 2570.5475 5639.4424 6674.4381 3717.2638 6454.471 2950.9097 3254.264 2176.2418 219542498 mct Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 5788.5862 2800.8464 71227.8435 9699.6139 8458.0419 9757.281 4991.597 5501.8652 4369.8139 116744.4298 3557.0372 68568652 catechol_b Organic Remediation Aromatics Other aromatics Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 2402.5933 3711.3504 60094.824 3602.8292 7027.3021 4230.3611 4974.6126 5376.1018 5824.197 334118639 b_lactamase Virulence Antibiotic resistance Degradation Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 45010.4196 56476514 badi Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 2841.0719 5748.1395 302404074 endochitinase Carbon Cycling Carbon degradation Chitin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 1993.7133 8247215 amyA Carbon Cycling Carbon degradation Starch Halomonas meridiana superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6061.4691 2797.7311 4868.4358 373097298 poba Organic Remediation Aromatics Aromatic carboxylic acid Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 5347.4534 7258.3542 3398.8466 2280.9453 2280.9453 4154.4782 359314685 terc Metal Homeostasis Tellurium Detoxification Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 6656.4143 2497.5274 6159.1338 14842.3073 4517.3095 4517.3095 4734.6248 15367.3547 21693.7793 2689.147 4991.2433 36633.3206 2751.0748 283138030 nirk Nitrogen Denitrification NA Methylomonas sp. 16a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas; 2587.5791 15616245 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 2844.2812 6890.9346 37307.0395 3474.2203 211585112 chnc Organic Remediation Other Hydrocarbons NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 2760.6965 3131.4709 2902.8506 254786957 arsc Metal Homeostasis Arsenic Detoxification Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 6132.9358 298590391 amyA Carbon Cycling Carbon degradation Starch Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 2763.7909 166442.8724 8223.8405 5125.156 5408.0372 6128.0895 15891.2589 146312620 arsc Metal Homeostasis Arsenic Detoxification Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 2538.5734 2568.3276 340362072 nosz Nitrogen Denitrification NA Neisseria macacae ATCC 33926 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria macacae; 2169.4206 3192.1601 6318.4166 2475.09345 151581205 nifh Nitrogen Nitrogen fixation NA Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 212522.6916 383650495 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces chartreusis NRRL 12338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces chartreusis; 5132.2588 3064.2516 349699828 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 3782.4726 2880.3239 3102.6177 350549347 terc Metal Homeostasis Tellurium Detoxification Thermobacillus composti KWC4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Thermobacillus;species:Thermobacillus composti; 3503.1208 56579.0577 3763.6755 7235.4465 12713.2518 126565781 EF1a_Stramenopiles Other Phylogenetic NA Pythium vexans superkingdom:Eukaryota;order:Pythiales;family:Pythiaceae;genus:Pythium; 2868.6469 4753.4161 11441.0425 83361963 urec Nitrogen Ammonification NA Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 2864.2488 7235.8301 13480.8085 14050.5128 14050.5128 5791.6977 5666.9838 5175.3495 4657.7311 7956.0362 3081.3262 6566.7797 5960.0232 3784.2783 3265.3824 11848.6799 2807.5508 387221623 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II 'C75' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 2726.8037 2386.0958 2386.0958 3741.3334 117188659 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 5792.7216 2821.27 70930928 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2591.1329 3725.6947 3131.0458 3131.0458 3350.7442 3121.0612 315665535 nrfa Nitrogen Dissimilatory N reduction NA Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 3881.571 1255496 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 56215.244 61611869 catb Organic Remediation Aromatics BTEX and related aromatics Delftia tsuruhatensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 2651.8794 4821.057 61907.9976 3439.2692 3439.2692 2650.8781 11749.141 3675.1467 12584338 norb Nitrogen Denitrification NA Achromobacter cycloclastes superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter; 2413.4938 3506.8524 3967.8237 2062.5045 378718021 cpna Organic Remediation Other Hydrocarbons NA Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 2849.9995 309391408 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 2565.085 291067759 dehh Organic Remediation Chlorinated solvents NA Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 2528.1653 2541.9461 4674.485 1934.4 1934.4 6456.0016 3897.8252 3696.2209 4500.51 2311.2269 5366.285 5090.0629 1831.9506 2837.0625 2870.9571 6064.5622 116334191 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus brevis ATCC 367 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus brevis; 1996.2279 3881.9668 81197.0553 5984.8531 5823.8385 3388.3004 1853.8896 3853.4245 254784529 endochitinase Carbon Cycling Carbon degradation Chitin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 4606.9525 12574.4582 18032.4813 4514.5362 81428811 amyA Carbon Cycling Carbon degradation Starch Lactobacillus sakei subsp. sakei 23K superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus sakei; 2519.3476 3997.236 6082.845 4336639 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium A47 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 5750.0875 6598.9752 2314.3923 222451426 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 5164.5256 6570.7216 26323.6851 5227.8331 8473.8689 6318.0134 2233.0564 8162.6364 170122209 pme Carbon Cycling Carbon degradation Pectin Escherichia albertii TW07627 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia albertii; 2810.9802 5037.0616 7807.2986 4459.0757 4078.4 20604.78 2231.1204 3056.6911 161380807 FBPase Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 27670.3008 6827.6031 2367.9991 2367.9991 4975.0358 4030.9196 2337.0042 2401.6855 225194112 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2027.5441 4686.7892 3841.5051 116666356 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 2273.3432 5630.7714 9994.6423 12111.8575 4562.5975 350568296 ara Carbon Cycling Carbon degradation Hemicellulose Propionibacterium avidum ATCC 25577 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium avidum; 19584.4815 83931.1434 3681.8619 6627.4123 9687.6767 2284.0489 8960.0205 4638.4212 5639.0813 3733.3887 3695.1388 2691.7833 291197184 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3765.9186 4770.0212 403120723 poba Organic Remediation Aromatics Aromatic carboxylic acid Alicyclobacillus hesperidum URH17-3-68 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus hesperidum; 1971.2183 3035.708 9981.1287 4195.847 6651.1965 9847.3997 4922.338 2678.6 4006.021 5514.4931 1853.4483 3390.5924 2949.8244 389934552 xyla Carbon Cycling Carbon degradation Hemicellulose Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 6930.9667 4273.1569 9508.7345 156534517 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter sakazakii ATCC BAA-894 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter sakazakii; 5335.4433 253999522 arsc Metal Homeostasis Arsenic Detoxification Methylovorus glucosetrophus SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 3642.0312 5046.3427 4459.882 146272622 ppx Phosphorus Polyphosphate degradation NA Pelotomaculum thermopropionicum SI superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum;species:Pelotomaculum thermopropionicum; 3438.4265 6940.9089 1713.552 365824675 amyA Carbon Cycling Carbon degradation Starch Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 2293.4382 13249545 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2759.8685 4523.4779 3504.3394 357937174 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 33372.0334 190685465 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 2271.0579 38201062 chrr Metal Homeostasis Chromium Detoxification Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 2939.9358 16865.522 118165717 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 35592.7685 359427177 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 5644.9061 3479.9836 3841.7225 4237.9564 7945.3542 4612.3429 3144.3178 209517683 mmox Carbon Cycling Methane Methane oxidation Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3148.3048 5292.6849 3118.7528 9459.2523 3248.0595 345860857 nifh Nitrogen Nitrogen fixation NA Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 4328.3936 4098.3136 83316758 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17085.964 6020.6935 5544.5057 4168.9489 4168.9489 292646011 amyA Carbon Cycling Carbon degradation Starch Turicibacter sanguinis PC909 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter;species:Turicibacter sanguinis; 2582.806 3023.5007 3023.5007 5262.8588 77378622 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2536.5145 1865.3232 1865.3232 5687.2566 4621.4723 259446205 ppx Phosphorus Polyphosphate degradation NA Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 2786.9641 15938.3525 3658.1643 72169.8298 1915.0072 1915.0072 5397.5691 3209.446 3845.7236 4860.4419 13751191 rd Organic Remediation Chlorinated solvents NA uncultured microorganism DCP/6-201 superkingdom:Bacteria; 8759.4737 6387.7022 121461.1145 2991.3465 2991.3465 4164.3683 3639.8059 22423.102 3853.4565 114540793 SoxV Sulfur Sulfur Oxidation NA Roseovarius sp. HTCC2601 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pelagibaca;species:Pelagibaca bermudensis; 3694.7544 4873.0778 3216.9714 4713.2085 9916.8346 2934.6895 189464206 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 2464.6097 6394.84 3839.7182 3250.6366 11205.763 10065.772 2198.9293 126716777 mer Metal Homeostasis Mercury Detoxification Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2460.7288 333462156 amyA Carbon Cycling Carbon degradation Starch Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 2473.8643 91782141 urec Nitrogen Ammonification NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 3400.243 9272.0168 163792493 nhh Organic Remediation Aromatics Nitoaromatics alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 2642.6453 4720.3826 4720.3826 4606.7113 16456.3709 2759.418 3396.2209 4471.8404 3971.1898 5106.4667 3572.6025 346918937 FBPase Carbon Cycling Carbon fixation Calvin cycle Azospirillum amazonense Y2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum amazonense; 2011.8717 2917.6118 4231.6749 2590.3533 2590.3533 6956.5025 4817.3348 17321.2594 37695.0126 2574.9576 2769.125 21449.8329 8859.8124 1858.3474 5616.1256 169886108 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2077.387 70962.3762 4898.1909 1888.1268 6579.3088 4859.2044 187923468 nbac Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 14102.3828 3968.9718 157285700 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 21404.601 2190.5532 160867143 amyA Carbon Cycling Carbon degradation Starch Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 3158.6459 3541.3587 4318.4997 340553643 arsc Metal Homeostasis Arsenic Detoxification Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 4630.6475 3235.327 10265.2594 2201.4708 2201.4708 3454.0147 3150.2979 333808936 b_lactamase Virulence Antibiotic resistance Degradation Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 2907.6853 6017.6151 4474.2265 5366.0247 2344.024 121604328 TIM Carbon Cycling Carbon fixation Calvin cycle Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5909.4348 4321.9457 4713.9815 120291.137 5534.0358 2975.391 7142.5484 7142.5484 162047.9204 8490.3772 2502.6508 7275.3106 2292.0881 9485.3611 3773.1915 5725.5678 2995.4581 3000.4426 3009.7949 3398.0586 4402.9278 321163173 ara Carbon Cycling Carbon degradation Hemicellulose Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 9693.7546 74913.0497 6850.4327 4208.3483 21039.4064 8039.7413 6233.1778 3379.1949 4127.5939 5127.587 12212.6706 3784.3924 6420.5546 3818.3883 7605.9092 3839.9653 29545.4713 5700.0958 22252898 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5125.4816 3032.0087 4101.0373 4521.8751 7858.8451 3725.2662 6170.3854 6797.9144 2350.5797 3130.4691 3627.596 1993.6926 294471660 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 3871.2933 4286.1481 3122.7895 5336.5717 6970.0698 4319.158 5352.0947 3714.2763 3753.369 5132.3568 3986.2367 2833.5784 237684436 RgaE Carbon Cycling Carbon degradation Pectin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 2711.5454 4838.85 86277.5823 3634.0073 3939.3438 2529.2947 5256.7948 2214.8556 2990.8781 2224.6807 219549369 arylest Organic Remediation Aromatics Other aromatics Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 5090.3608 256725170 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 2242.577 7541.3633 4385.7099 2712.4403 90335652 amyA Carbon Cycling Carbon degradation Starch Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 3296.6883 111020800 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 8184.6025 1821.4461 1821.4461 5359.0347 8023.1855 353675045 amyA Carbon Cycling Carbon degradation Starch Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 45232.5101 15378.295 2164.4017 89949850 amyA Carbon Cycling Carbon degradation Starch Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 2496.1161 340777511 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acetobacter aceti NBRC 14818 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter aceti; 2934.7563 37667.9881 2293.4455 12604.7263 333991631 alkb Organic Remediation Other Hydrocarbons NA Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 3921.9049 2889.521 2905.9039 17252.8546 18893.2352 2869.6019 157165441 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 7695.4692 3763.7261 3063541.4254 4666.1986 8012.9239 29496.1357 2847.5448 3341.992 15921.6431 299742129 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1876.564 145296816 nfsa_2 Organic Remediation Aromatics Nitoaromatics Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 5305.3549 238602074 cellobiase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 3052.6571 354262.6186 4866.4525 4846.8687 5024.5618 87082461 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 14446.9569 296414267 rgl Carbon Cycling Carbon degradation Pectin Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 899407.2814 379990589 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5308.9344 10907.1355 330974177 amyA Carbon Cycling Carbon degradation Starch Pseudomonas syringae pv. aceris str. M302273 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 3424.6176 6484.0808 4868.525 17040.1694 18160993 dsra Sulfur sulfite reduction NA Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 5565.4186 238719723 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 2424.3139 5484.1929 4317.7245 5158.5117 2875.2203 2619.6996 55301.8115 3012.5719 7420.854 3323.8515 2717.1295 379988857 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4093.3165 6995.1487 67747.3024 2916.5509 5104.399 5231.9263 11050.4481 315280375 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 4331.2586 37546.0052 2826.7824 3322.9398 31559086 fosa Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2120.1489 91795179 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5414.6794 193214903 arsc Metal Homeostasis Arsenic Detoxification Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 6821.9997 6306.5968 7886.4742 9419.8898 6969.3622 3752.423 3752.423 9777.5791 3670.4821 6831.6403 7127.3836 21561.6496 8342.9841 4693.6803 260222048 alkj Organic Remediation Other Hydrocarbons NA Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 5086.1189 23635.1908 58029.5595 3279.5975 85824586 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3957.4679 326542986 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 8032.0991 2570.766 197705180 amyA Carbon Cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 2248.9153 8016.2467 3389.539 3905.6068 1110531.1936 3571.0585 3028.1024 5736.4515 356690804 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4814.5117 71711.5475 283835186 cueo Metal Homeostasis Copper Detoxification Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 6245.2344 312293736 amyA Carbon Cycling Carbon degradation Starch Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 2529.627 3704.6206 803894.5531 3003.7189 256393823 amyA Carbon Cycling Carbon degradation Starch Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 3821.3681 57988.8591 4680.4303 7114.9196 4736.5594 2262.2194 2047.3682 2263.0127 383935562 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 2178.5741 32895204 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3153.1571 4463.8628 9561.5254 297537984 fccab Sulfur Sulfide Oxidation NA Methylotenera sp. 301 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylotenera;species:Methylotenera versatilis; 6756.6683 24780.6104 2937.5328 2552.1681 6986.302 6746.1289 2890.9485 2672.5899 4494.0472 255008414 arsm Metal Homeostasis Arsenic Detoxification Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 2284.1909 9978.6714 4939.0833 7361.7964 5170.4194 307719882 ppx Phosphorus Polyphosphate degradation NA Spirochaeta thermophila DSM 6192 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 3581.1487 4095.2636 5164.7464 99083061 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3908.8476 65830.9832 4250.5775 4821.9038 4821.9038 5167.8617 6847.622 6304.5926 16506180 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 3512.7449 261251754 amyA Carbon Cycling Carbon degradation Starch Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 5034.1111 258593184 pmoa Carbon Cycling Methane Methane oxidation Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 3678.8645 5788.676 35871.9973 5579.6909 6194.1728 3476.394 5569.2461 3869.7918 9771.1793 2390.9188 3597.7419 5390.6194 398051852 trze Organic Remediation Herbicides related compound NA Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3745.2192 8735.036 84043146 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5912.4008 24692.5427 223587962 aromatic_peroxygenase Organic Remediation Aromatics Other Coprinellus radians superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinellus; 19029.3253 3896.1918 12687.486 2722.6418 2373.8429 1792.4779 6392.5601 260461652 ara Carbon Cycling Carbon degradation Hemicellulose Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 13035.0121 242212556 endochitinase Carbon Cycling Carbon degradation Chitin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 2852.3564 4202.5476 299831810 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4272.6654 109455707 hbh Organic Remediation Aromatics BTEX and related aromatics Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 3429.1602 5838.0068 3221.2137 2930.7238 357009916 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 4572.3202 6981.8674 2764.2891 17085.216 3528.8739 5655.223 19079.9608 3118.794 3488.9035 5693.7261 1704.7271 10139.7675 4763.7927 24025.0395 34516.6378 197721741 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 3072.729 82227.1975 1922.4317 1922.4317 6580.6021 3164.87 5651.5816 4964.7063 2285.3539 3625.3481 7216.6853 3786.3989 3901.6536 2933.4601 3458.597 37726813 dsra Sulfur sulfite reduction NA uncultured prokaryote 7574.9831 4418.4856 5669.0228 6751.4277 4045.0182 353200359 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 3463.6109 64818.9702 3457.7417 4016.8706 3603.8068 3518.1314 6708.9278 59956980 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 3413.3491 6537.9627 68164676 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4798.5971 393163011 catechol Organic Remediation Aromatics Other aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 4037.0293 9923.2078 112517.76 10367.7353 4766.304 5068.5269 5068.5269 5001.3812 386273808 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 5707.6268 9718.5515 3767.1119 9409.1866 302698117 RgaE Carbon Cycling Carbon degradation Pectin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4546.6513 88829.9381 6583.9562 5356.6006 5352.6507 7255.5681 2720.6584 4384.067 7215.8913 2287.1362 3194.0416 3809.9106 3306.7397 7367.5894 110678409 arsc Metal Homeostasis Arsenic Detoxification Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 8323.5567 196112202 nitro Organic Remediation Others NA Alteromonas macleodii 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 74439.7765 4970.5396 5630.3504 5084.2881 4132.3667 3114.0765 373958127 amyA Carbon Cycling Carbon degradation Starch Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 3471.1514 2749.7351 345880283 amyA Carbon Cycling Carbon degradation Starch Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 3997.314 3699.4259 3535.5324 2908.7411 5825.0276 299738283 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3277.4219 21446.7643 91793490 chitinase Carbon Cycling Carbon degradation Chitin Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 6358.6552 7056.8727 3959.7062 94470909 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3099.684 4059.4663 4181.1839 2169.8893 1675.7003 3263.1569 187972225 endochitinase Carbon Cycling Carbon degradation Chitin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 4141.5592 4272.0343 3734.8198 5059.6667 4206.0702 5480.034 2817.6034 5590.9249 5222.3247 146304410 acaB_arch Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 5020.4363 9483.1227 2318.9711 8937.7943 410133570 one_ring_12diox Organic Remediation Aromatics Other aromatics Glaciecola agarilytica NO2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola agarilytica; 37175.1491 8376.6384 4377.0933 86566.6962 4264.7297 5270.9543 10148.3891 5557.7754 4131.8038 2280.2007 2620.577 392844318 pcpe Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4011.6656 5091.3966 144905782 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3626.6105 7630.6064 5835.1134 41411249 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio fibrisolvens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio; 3217.5343 67599.4156 3827.6656 5321.1646 4077.8098 5947.6529 5657.5848 2638.6472 6484.9812 2136.3074 10572.6503 4970.5268 5540.7633 1855.0215 3232.0951 3731.1059 5178.4039 307745769 terc Metal Homeostasis Tellurium Detoxification Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 3983.0841 3480.1275 6468.783 2769.896 46190474 xylanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 5263.1465 394757857 B_lactamase_A Virulence Antibiotic resistance Degradation Clostridium sp. MSTE9 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 3962.5555 2235.8893 2235.8893 28588.4343 2906.3965 284181765 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium decumbens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 11125.2138 7294.4905 3995.5693 541309.665 3679.4492 8734.6809 8723.3647 12704.0908 3610.0572 73883.888 304310962 narg Nitrogen Denitrification NA gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3578.5242 6400.1299 4303.347 23494.1657 4141.5938 2437.4148 2902.3554 2845.9929 70522.817 21489735 tcpa Organic Remediation Herbicides related compound NA Ralstonia eutropha superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 3735.1638 53557.1591 8563.6823 6808.5749 14558.971 4310.2534 296818799 phytase Phosphorus Phytic acid hydrolysis NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4696.1045 9859.3252 33863473 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 3972.7071 3794.5431 2372.3623 63482.3058 3663.8737 5226.788 5226.788 2710.0319 13537.005 5014.5609 3539.3322 17557.0531 7943.1039 16131.5041 2666.6679 10209.9153 5830.6484 2609.0525 119467954 lactase_fungi Carbon Cycling Carbon degradation Lactose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4983.7713 20817.591 3008.3264 3008.3264 4379.5023 5945.2281 2745.7216 2500.6397 296242126 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermosphaera aggregans DSM 11486 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Thermosphaera;species:Thermosphaera aggregans; 3543.7788 67902508 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 17524.3008 12345.1742 3113.9513 25705.9161 2504.1724 2504.1724 3948.7813 2390.2396 2434.331 359761367 catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4160.4833 319907544 ppk Phosphorus Polyphosphate synthesis NA mine drainage metagenome 3039.2741 5647.4987 3574.5649 203595.3793 10115.4061 6111.6587 4833.5994 4833.5994 5908.5878 4851.2992 28171.1297 5910.1816 15629.7522 3576.9416 5295.2642 1664.8258 2327.9394 3063.7577 6605.1246 298535576 amyA Carbon Cycling Carbon degradation Starch Thermoplasma acidophilum DSM 1728 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma;species:Thermoplasma acidophilum; 3556.9297 6121.2607 3660.0394 2570.5544 5639.5654 5590.5382 199593991 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3242.0529 9533.2235 2653.2601 9522.6183 9522.6183 2615.7579 2144.8804 2638.6315 77960011 amyA Carbon Cycling Carbon degradation Starch Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 3644.6526 12280.0419 4497.2118 8333.7041 6755.6752 56809523 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3568.9048 69382.8482 6184.5869 3621.8119 6421.2312 8953.132 6982.6369 1789.09 3268.6375 7776.7232 158313329 cysJ Sulfur Reduction NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3560.206 118424367 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8254.7147 4929531 cymc Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 21537.4172 133918739 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium mediterraneum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium; 3152.9471 4191.8784 4663.4444 4106.5844 51242705 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 3009.0734 333461771 ppx Phosphorus Polyphosphate degradation NA Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 4479.6268 1616.6557 393772890 amyA Carbon Cycling Carbon degradation Starch Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 4246.5527 4658.3287 2273.0369 64012.6725 3074.8503 7786.976 3935.8364 6052.7134 15731.6802 3281.0321 3128.2745 3236.1481 9694.4943 6804.9714 2854.3213 5026.4357 3686.2821 2670.9823 5991.28 374413679 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2687.6947 5060.6199 11366.5955 11366.5955 5760.4937 2796.2068 6114.0186 2401.4666 2744.9832 3452.2151 288570203 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 8243.8264 3880.7795 93053.596 8526.8457 4559.1068 7140.7654 2391.6485 2391.6485 3287.1471 8327.9359 12176.2685 4836.8488 7739.498 2865.1557 3894.0345 8585.2038 5668.209 16590.4236 6379.443 12239.9132 3282.081 6982.6114 5542.9084 2683.7695 15068.2847 83645917 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 8442.1325 89804.3774 8380.709 22737.9331 313695154 endoglucanase Carbon Cycling Carbon degradation Cellulose Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3975.264 295699551 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4936.5868 119403967 bph Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3213.6964 4570.3919 6908.2077 9855.1626 7413.841 109457181 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 3607.8812 4526.2351 3156.6501 4475.5466 2280.953 2280.953 24484.7071 5150.8199 7090.6313 4327.5308 3107.1431 4728.7881 51244957 aps_apra Sulfur adenylylsulfate reductase NA Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 2810.8563 198268711 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 8851.3942 3832.1082 42522574 ppx Phosphorus Polyphosphate degradation NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 3117.3765 6811.4441 6253.0392 1776.5384 6413.3926 5223.105 115421956 pgk Carbon Cycling Carbon fixation Calvin cycle Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6598.8863 4626.2675 7023983 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 2979.5011 4057.496 80610.4567 8246.9116 2716.0438 118577309 nrfa Nitrogen Dissimilatory N reduction NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 3601.3604 40888721 protease_serine_fungi Carbon Cycling Carbon degradation protein Beauveria brongniartii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps brongniartii; 8165.6597 3695.1305 4490.7467 55616.6111 7805.1736 4094.8534 14152.1115 4601.5358 4601.5358 41330.973 10477.2621 3608.4713 4532.3193 7067.654 2642.0938 5923.2805 5887.3809 4732.6272 13983.3597 5392.6963 13192.6997 2777.4211 5410.9745 2737.6189 790698 exoglucanase Carbon Cycling Carbon degradation Cellulose superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 5582.1222 8795.9814 3057.7018 103576.1342 6480.1849 11143.5578 11143.5578 7684.471 4676.7473 6914.0734 4797.3296 9114.2843 3169.0889 3579.3321 7625.8155 9046.2667 365886117 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4646.149 4411.431 5045.4176 4049.0542 5615.1269 8571.9093 27937.3476 2495.2423 6942.4417 5542.6331 8161.9333 1795.3862 11606.2215 291448627 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 3491.3182 5866.1484 62275.612 4875.9218 8018.7453 8018.7453 72057.5803 3229.8711 12181.8188 2781.1041 374668309 pgk Carbon Cycling Carbon fixation Calvin cycle Burkholderiales bacterium JOSHI_001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 2911.6418 1975.5022 3444.4842 4601.1334 20516009 arsc Metal Homeostasis Arsenic Detoxification Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Caldanaerobacter;species:Caldanaerobacter subterraneus; 3876.1631 4238.0756 62227.6977 2998.5463 7401.716 3783.4626 5920.6617 5675.6373 2442.5381 9819.5049 2418.0219 2819.7546 6830.8383 386715515 arsc Metal Homeostasis Arsenic Detoxification Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 2946.8918 7410.4937 3684.2303 7161.5164 2014.1338 6651267 pel_Cdeg Carbon Cycling Carbon degradation Pectin Colletotrichum gloeosporioides f. sp. malvae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella cingulata; 3711.3669 5194.9897 5793.4355 6153.6257 5015.8895 7869.3222 5112.8826 1997.8913 24498.2353 149122807 one_ring_12diox Organic Remediation Aromatics Other aromatics Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 8097.45965 154702749 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 10627.822 4397.9251 6914.907 13802.8942 106886878 pula Carbon Cycling Carbon degradation Starch Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 3416.5498 182260.1255 11526.4079 323365726 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 3132.03 68111.954 6394.5248 4825.0874 5394.2301 2698.8471 5556.1638 5998.1541 2145.1543 3822.0254 3386.5793 2082.5242 5663.4304 40744228 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 14363.921 4008.5602 83424.8505 6108.0836 5202.8088 5202.8088 5929.8807 306495454 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3586.2372 81622.8565 3813.2657 2696.0208 4841.8593 7233.7633 5484.013 9071.1343 6076.1917 5962.7646 3815.6749 6990.2069 398151067 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9123.6991 3932.3411 14265.8722 8830.6852 4017.0961 66024.7847 31308.6711 2492.8142 9336.2859 15382.6784 46138849 endochitinase Carbon Cycling Carbon degradation Chitin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 5423.3008 5410.867 12668.7128 11107.5056 40035.2375 6851.4346 7288.2621 2460.4546 2761.9256 7555.0096 870800 GAPDH_Euglenozoa Other Phylogenetic NA Euglena gracilis superkingdom:Eukaryota;phylum:Euglenida;order:Euglenales;family:Euglenaceae;genus:Euglena; 4049.1068 38503493 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 3440.9261 2601.0139 7338.9315 3336.9158 5329.1571 4850.2836 2127.8218 3585.6464 220907794 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3543.5543 73655.5581 9373.3739 5323.2721 6456.8831 2157.2278 4803.2097 7029.5584 1787.3211 3245.1457 4430.5171 6228.0151 349792251 pgk Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 105735.1898 6655.6971 5220.5109 171700646 ccmN Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2873.2113 422314075 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3567.3308 7365.0769 14300.026 357012728 xyla Carbon Cycling Carbon degradation Hemicellulose Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 4885.527 126105509 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2999.7392 299739893 p450aro Organic Remediation Aromatics polycyclic aromatics Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3155.6623 2746.1441 209401644 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3532.6513 332664581 phytase Phosphorus Phytic acid hydrolysis NA Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 9117.8529 373454296 nifh Nitrogen Nitrogen fixation NA Dialister succinatiphilus YIT 11850 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister succinatiphilus; 3150.2446 4554.9503 2633.077 290784610 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Chondrostereum purpureum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Chondrostereum; 7714.4093 3523.939 3523.939 95134298 nifh Nitrogen Nitrogen fixation NA Desulfuromonas acetoxidans DSM 684 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromonas;species:Desulfuromonas acetoxidans; 3750.8792 6599.5978 2412.3423 2412.3423 8220.0085 3819.7591 109452459 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4869.073 8126.167 5639.3151 4801.9544 2501.8598 343922197 ppx Phosphorus Polyphosphate degradation NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 4638.7204 170939221 arsc Metal Homeostasis Arsenic Detoxification Cupriavidus taiwanensis LMG 19424 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus taiwanensis; 3667.7659 9337.0475 2030.4647 2030.4647 4301.2241 3490.2832 3152.7598 307746759 glucoamylase Carbon Cycling Carbon degradation Starch Pichia fabianii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Cyberlindnera; 3195.058 4736.6595 6059.3214 3282.1169 5568.6111 359344105 urec Nitrogen Ammonification NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 2896.1903 2052.4297 148724109 one_ring_23diox Organic Remediation Aromatics Other aromatics bacterium YT01 superkingdom:Bacteria; 3515.8602 70746.6962 307720608 ppx Phosphorus Polyphosphate degradation NA Sulfurimonas autotrophica DSM 16294 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas autotrophica; 161627.3077 304558473 arsc Metal Homeostasis Arsenic Detoxification Edwardsiella tarda FL6-60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella tarda; 6365.4086 4552.6546 20021.4253 3706.1159 209549625 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4808.5173 225081.4345 18969.3592 5406.6878 5406.6878 23389.2028 7670.8732 18102.0861 7190.8553 8061.9752 2008.8585 3218.1296 46308000 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4378.0275 3501.5403 5594.0002 7350.9672 8303.3285 211957928 phn Organic Remediation Herbicides related compound NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 18727.7995 4246.4096 10564.0406 2336.7797 2981.1408 343925545 one_ring_12diox Organic Remediation Aromatics Other aromatics Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 5873.6046 81167976 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 5474.1249 4153.8252 150837975 catechol Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 3499.5054 6995.5793 5391.5414 2523.2872 315444090 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 2990.8155 323702337 xylj Organic Remediation Aromatics BTEX and related aromatics Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 3298.0678 5951.8357 7573.8269 3601.9059 3459.9835 4130.7159 3108.1806 5987.1137 9499.9511 3027.9042 3354.6186 19825.1998 284388651 amyA Carbon Cycling Carbon degradation Starch unidentified 3361.914 10659.122 276929.8492 5073.7459 5464.2836 299539369 ppx Phosphorus Polyphosphate degradation NA Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 6133.9147 238550020 cara Organic Remediation Aromatics Heterocyclic aromatics carbazole-degrading bacterium OC9 superkingdom:Bacteria; 12149.7476 9348.7946 7054.5808 4349.0122 3370.7567 2813.2306 170092709 protease_serine_fungi Carbon Cycling Carbon degradation protein Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 13833.198 288867453 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3227.881 78271.0336 3628.6281 3497.9161 2841.8252 8633.4138 4088.7898 5133.7487 2446.839 2983.4775 2324.7414 77378751 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 60311.6203 6949.5844 297626259 amyA Carbon Cycling Carbon degradation Starch Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 4440.323 4525.2493 2006.0707 4490.1756 113732397 tfda Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 7656.1227 2781.0647 2781.0647 3217.9984 6041.6468 12598.2458 1983.0291 159102469 phenol_oxidase Carbon Cycling Carbon degradation Lignin Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 3539.7934 56754.5475 6105.1395 89512810 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3331.049 61919.0439 7612.2593 4362.0616 2656.697 6982.6256 4372.3946 5517.3377 254438077 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 4108.1812 5813.8277 4187.7725 3931.1912 8119.6264 150031719 arsc Metal Homeostasis Arsenic Detoxification Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 3755.6673 4629.3446 5532.1379 5532.1379 13931.7612 4885.942 7436.6395 9649.5226 9280.0662 5788.1648 2340.2179 3857.3766 2177.1606 209544938 B_lactamase_A Virulence Antibiotic resistance Degradation Gluconacetobacter diazotrophicus PAl 5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter diazotrophicus; 80314.7704 3664.0298 5460.0993 158110914 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 38460.1643 17036.3719 4115.5675 7169.1422 16192.1061 401762668 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Enterobacter cloacae subsp. cloacae ENHKU01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3599.2974 288919864 terc Metal Homeostasis Tellurium Detoxification Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 8316.878 34017212 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4578.1848 91807194 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 6281.3676 6628.7479 10501.9775 5670.1402 5056.9802 2558.5594 323383815 ppx Phosphorus Polyphosphate degradation NA Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 19718.5395 109701235 beta_agarase Carbon Cycling Carbon degradation Agar Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 3200.7049 4412.9995 119511341 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 14327.8048 4793.2771 371950924 amyA Carbon Cycling Carbon degradation Starch Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 3407.6569 66028.9635 6549.7074 5647.7248 4859.6866 30753.5613 4762.2069 309777646 pula Carbon Cycling Carbon degradation Starch Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 6372.9529 2834.5254 150854549 glucoamylase Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 3230.2333 258586669 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus VM573 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 9360.4436 8262.4042 4625.848 4475.1684 15039.2831 3090.6379 10274.0259 25737.2012 304404634 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 8069.1123 8962.5716 357385800 arsc Metal Homeostasis Arsenic Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 3690.9245 66273.0974 42849.7796 46981128 nirs Nitrogen Denitrification NA Pseudomonas sp. NBP39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8463.5588 7950.6059 4172.3348 3339.4106 146338520 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5968.3404 87570.0732 5187.7397 5187.7397 6770.8915 4485.265 5664.0785 6636.2686 5840.4745 5827.4076 2166.7395 4560.6553 365540913 arsc Metal Homeostasis Arsenic Detoxification Vibrio ordalii ATCC 33509 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ordalii; 4255.2047 65561.6157 5794.6654 2354.327 3067.5421 4484.124 209547399 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5351.6031 239992561 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces roseosporus NRRL 11379 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 3015.7497 3660.1228 6572.0043 2519.6316 298503.0428 3786.9278 2748.8015 326547623 catb Organic Remediation Aromatics BTEX and related aromatics Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 5164.3244 398091481 B_lactamase_A Virulence Antibiotic resistance Degradation Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 3046.2492 3861.7306 319409343 tktA Carbon Cycling Carbon fixation Calvin cycle Bartonella schoenbuchensis R1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella schoenbuchensis; 6993.5593 4729.2758 170079290 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 10009.2588 6430.2915 379004954 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 3611.5878 320548537 chitinase Carbon Cycling Carbon degradation Chitin Haladaptatus paucihalophilus DX253 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haladaptatus;species:Haladaptatus paucihalophilus; 2701.367 3323.8658 256725288 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 3262.1348 10745.809 3198.1188 4702.0933 328674666 mer Metal Homeostasis Mercury Detoxification Carnobacterium sp. 17-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 4036.6279 261419701 xylj Organic Remediation Aromatics BTEX and related aromatics Geobacillus sp. Y412MC61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 7649.1161 597525.2358 3930.9721 4633554 nosz Nitrogen Denitrification NA uncultured bacterium ProA superkingdom:Bacteria; 19346.0795 189204980 cpnb Organic Remediation Other Hydrocarbons NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10555.0834 3647.923 3666.6471 4433.1918 6069.3417 4128.3102 4360.4098 5747.2523 5577.408 6082.3314 157420104 endochitinase Carbon Cycling Carbon degradation Chitin Chaetomium cupreum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 27564.2561 6004.5699 2692.67 2692.67 36402.4278 4233.0379 3891.5762 2173.16 2900.6616 116743202 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2962.5977 3886.6034 4027.9795 4660.0953 6621.5018 4243.9068 6330.6586 1884.7078 6867.36 150841067 cysI Sulfur Other NA Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 2742.1109 3823.4863 10437.1208 4462.7118 16801062 endochitinase Carbon Cycling Carbon degradation Chitin Listeria innocua Clip11262 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria innocua; 4100.8747 378747746 aps_apra Sulfur adenylylsulfate reductase NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 2781.4762 4691.6783 3019.6125 8880.9794 2479.2315 2479.2315 12320.9629 5725.3895 2561.809 4031.3019 5758.0103 6412.2906 3128.4803 6721.4349 198273197 rgh Carbon Cycling Carbon degradation Pectin Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 4030.1162 79171.2437 2249.2914 2249.2914 3225.6321 62512275 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 20854.8228 8227.647 33072.3969 33072.3969 3340.1158 8993.4643 296426577 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3700.3602 5002.8818 4130.7667 4130.7667 4469.1928 2177.5558 6279.6202 6542.1384 2997.5378 13898397 dsrB Sulfur sulfite reduction NA sulfate-reducing bacterium AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2986.4702 2040.6113 2040.6113 14771.8449 6155.4336 13167.0927 2919.2308 190343178 ppx Phosphorus Polyphosphate degradation NA Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 4602.8405 10181.9172 116882.9449 5086.793 29591.9076 134266926 xyla Carbon Cycling Carbon degradation Hemicellulose Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 6368.7805 17585.7197 4366.117 6016.6712 119490160 phospholipase_B_fungi virulence degradation NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 3012.8945 8405.6428 1809.7626 15613172 cysJ Sulfur Reduction NA Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 14429.2904 64437.069 8070.9973 186988.2508 5242.3519 132716.7498 7800.159 2655.8705 3978.3948 3197.9209 6574.7024 116643981 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3087.137 85173.5326 23764.8226 6370.0458 4394.4795 2299.9124 6891.0272 2354.9934 5513.613 3392.8382 5107.9559 87281243 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5727.2433 39983297 mer Metal Homeostasis Mercury Detoxification Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 4294.9621 87301512 mer Metal Homeostasis Mercury Detoxification Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5097.0165 7999.8092 6655.7071 3371.7715 8642.8636 16100.1472 1959.0117 3886.2669 239624177 atza Organic Remediation Herbicides related compound NA Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 76278.1899 2175.3375 2175.3375 380450024 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5936.449 67975.1505 7833.4609 27615.6502 5852.1222 3890.7712 6146.6624 1922.3405 2875.3988 397320472 amie Organic Remediation Aromatics Other aromatics Rhizobium sp. CF142 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 118569.3459 4993.6849 6566.482 10491.8576 4254.1125 5219.0495 7201.3281 3266.0999 50120780 amyA Carbon Cycling Carbon degradation Starch Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 21297.7382 363414165 TIM Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 3212.5204 2580.8409 291514142 amyA Carbon Cycling Carbon degradation Starch Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 4090.7254 5594.8227 12365.1693 6979.1515 229557.0403 3617.5664 4924.1812 3832.2368 4084.8714 81300748 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 3584.1187 117559729 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Aeromonas hydrophila subsp. hydrophila ATCC 7966 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 7542.3377 3955.4921 16466.8144 9260.9985 4924.2535 2379.9068 6761.995 28919415 RgaE Carbon Cycling Carbon degradation Pectin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 3601.8081 7642.2725 2414.5165 719844.6022 6050.7456 2467.463 81168276 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 11863.6774 126715813 arsc Metal Homeostasis Arsenic Detoxification Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6859.0456 3027.1857 3027.1857 4971.6507 6299.0553 4148.2191 19733.4237 8579.4681 6591.4989 6151.6425 2764.7985 12386.7422 5996.4035 5447.1333 5413.8771 3528.9021 147851891 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3027.428 4372.3823 6947.1583 8565.0822 3833.6719 5467.0367 219965741 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3116.4642 3702.4273 6527.9788 8451.3533 3886.0152 2991.2229 3185.9447 2722.4432 2365.7723 156043229 glucoamylase Carbon Cycling Carbon degradation Starch Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 10084.3744 2597.9176 63001.0659 4756.3128 8027.3456 15187.9351 119879226 badh Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 3203.9735 3705.6848 4973.5837 5867.5383 2400.8112 4276.2943 121715065 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3604.26985 3955.9541 2590.7516 4669.9768 5746.8255 4158.9056 6345.1449 4838.4833 241363619 badi Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 16712.6349 319414033 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3571.0126 7856.834 193499.294 3496.1331 119562.2082 261414291 msad Organic Remediation Others NA Pseudomonas sp. JS189 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5446.6014 3919.4973 6729.8601 3169.6904 3169.6904 6346.036 3692.1859 5827.0953 10371.94 2560.8616 9593.1615 3818.4754 8049.0151 3207.5222 2863.0583 3933.6167 2586.5105 6561863 amyA Carbon Cycling Carbon degradation Starch Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 3733.3997 4290.6604 13577.2912 4028.9957 6692.4494 3896.3746 2828.7818 5811.9764 10429.019 13872.165 6804.8262 1891.5136 3067.828 4055.3165 2509.0707 4932.7988 156066928 endoglucanase Carbon Cycling Carbon degradation Cellulose Cellulomonas flavigena superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas; 5207.6419 69383.2358 8682.6312 5174.2413 6503.3028 4387.7566 4387.7566 7132.7245 4889.4717 3652.4088 3150.3814 227340232 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5895.5302 15688.4486 2761.1497 3266.729 2924.8854 2924.8854 3739.1506 2323.7373 9260.5972 5913.8916 7456.4448 4348.1109 7853.4035 353201393 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 25259.6439 3117.9064 2001.3358 2001.3358 3168.6163 10517.4647 345852779 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 4460.0205 4142.1064 13343.3647 2601.3449 2601.3449 6248.4745 4610.7193 1755.2265 9057.1858 3858.2482 3516.6737 148569557 fumarase_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 5680.0669 341587772 nifh Nitrogen Nitrogen fixation NA Peptoniphilus sp. oral taxon 375 str. F0436 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus sp. oral taxon 375; 3078.3505 5291.7016 4278.8883 6877.4515 5084.5174 5188.769 7488.5426 4248.5676 3398.5073 3015.0969 6055.2757 2694.7271 12480.5745 5018.2001 6684.9592 2566.3226 5708.7209 3818.7989 5961.9255 354580678 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 108537.8623 3786.8476 2573.0338 5224.3345 379005634 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 16041.2961 3907.8456 21489.5879 52080447 narg Nitrogen Denitrification NA Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 14767.9106 12057.1869 3657.7776 2119.6398 4089.312 33385653 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3376.7353 5211.0535 78031.3307 5463.8332 6332.1809 4989.4176 2580.9626 23708.2682 2575.3738 3277.3814 3500.6007 333026555 phytase Phosphorus Phytic acid hydrolysis NA Streptomyces sp. Tu6071 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 25736.4255 3509.5091 16045.1777 9073.3207 2455.4095 2455.4095 3474.3552 2388.9218 5453.1762 9856.885 7029.9619 2445.4679 8077.3261 3720.0935 2216.3291 177842240 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 3588.3063 3434.3649 4646.9799 4938.8584 9091.4429 7063.3464 4668.5503 2816.6999 9619.396 9469.6282 5941.5053 3599.7479 2753.2253 99082977 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4365.3346 5158.1406 4714.2883 2340.5021 345042593 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 3796.097 3417.815 5633.4828 5034.4152 2937.5419 114539951 ppx Phosphorus Polyphosphate degradation NA Fulvimarina pelagi HTCC2506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Fulvimarina;species:Fulvimarina pelagi; 3056.1691 4431.0246 7620.0412 2704.8538 2713.0383 297665507 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9926.2781 260771665 amyA Carbon Cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 73716.7688 103713.5735 3666.3516 4623.6837 2804.243 269837123 amyA Carbon Cycling Carbon degradation Starch Sphaerobacter thermophilus DSM 20745 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Sphaerobacterales;family:Sphaerobacteraceae;genus:Sphaerobacter;species:Sphaerobacter thermophilus; 3869.7396 357032836 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 4458.4851 254516198 soxY Sulfur Sulfur Oxidation NA gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3441.5512 4594.7628 5754.292 4436.453 4058.0978 2425.9254 6072.7012 2448.1366 4003.0033 6499.9242 1682.2041 2658.3119 3288.2283 218258067 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 4440.1227 24984085 proO Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4600.4863 310870699 urec Nitrogen Ammonification NA Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 5183.9628 4641.3934 79087.8736 5146.8336 12271.886 4747.5588 5378.8856 2178.8101 3119.4525 6510.5483 8746.332 4850.0799 8343.7382 4046.6617 3755.6963 6902.9427 33385649 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3283.0497 3142.4427 3142.4427 3175.9393 319952413 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulophaga algicola DSM 14237 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 4796.0039 4351.4927 5843.4853 4610.7391 139002659 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6949.0758 371765866 urec Nitrogen Ammonification NA Lachnospiraceae bacterium oral taxon 082 str. F0431 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae bacterium oral taxon 082; 14645.9485 194013637 cysJ Sulfur Reduction NA Bacillus pumilus ATCC 7061 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 3241.3106 6859.0607 3407.9776 7272.7819 2571.3572 5558.6456 5110.4783 5679.9745 3924.8284 4131.1637 5002.8746 7925.8374 13195100 dsrB Sulfur sulfite reduction NA Desulfotomaculum nigrificans superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 4123.5192 3715.9135 91647.5687 9424.2218 3849.6523 2160.958 2160.958 3056.0145 8763.621 4375.2728 3538.9208 2594.8746 11610.5362 8982.9043 6917.7462 23053.3618 7442.4936 2586.5656 256363045 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 3391.2657 2172.1815 2172.1815 11077.2497 8045.5013 10370.8791 4231.1221 5515.7999 40486.7627 4237.0089 288338072 amyA Carbon Cycling Carbon degradation Starch Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 3101.9159 3442.85 4982.0378 2796.8606 67904554 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2988.5988 4529.3944 112463779 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4036.7149 3285.1917 3285.1917 7169.4877 4337.6523 2756.4063 10406.8411 3305.475 294980602 b_lactamase Virulence Antibiotic resistance Degradation Zunongwangia profunda SM-A87 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; 4166.8408 158645.8094 392084485 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium abscessus 5S-0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 5462.3676 3632.657 60476357 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3698.1453 295087644 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides xylanisolvens XB1A superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides xylanisolvens; 2951.3523 5227.9719 87239943 cara Organic Remediation Aromatics Heterocyclic aromatics Nocardioides aromaticivorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 24953.6845 4326.0028 251790809 rgl Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 12512.4052 5106.4709 33586.9447 10810.7294 18925.6898 4537.2997 78221882 nifh Nitrogen Nitrogen fixation NA Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 38194.0125 119117007 alpha_tubulin_Oxymonads Other Phylogenetic NA Saccinobaculus environmental sample superkingdom:Eukaryota;order:Oxymonadida;family:Saccinobaculidae;genus:Saccinobaculus; 4140.8515 10881.0812 6962.201 10710.272 294791278 xylanase Carbon Cycling Carbon degradation Hemicellulose Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 3406.0514 5504.1645 3187.6968 258583362 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 3645.8499 4613.2196 2503.7694 5341.9904 2326.8224 139003399 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5350.3519 152069377 aps_apra Sulfur adenylylsulfate reductase NA Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 3394.3142 398104093 pcpe Organic Remediation Herbicides related compound NA Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 5343.3552 1956.4291 299816828 amyA Carbon Cycling Carbon degradation Starch Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 3510.3913 4795.2473 1801.3546 126105533 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9056.3877 5158.5258 4441.4651 15483.8985 2369.1742 2369.1742 3611.1563 11971.9379 196249994 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 3126.7256 332797885 MCM_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Acidianus hospitalis W1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus;species:Acidianus hospitalis; 4858.3634 4223.4219 5315.2983 2097.5697 2670.8026 10548.3723 3423.8315 2987.1776 11558298 alkb Organic Remediation Other Hydrocarbons NA Oleiphilus messinensis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oleiphilaceae;genus:Oleiphilus; 32917.1357 85069244 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3381.9119 28652.6336 62842.8208 7958.7422 3753.3611 3753.3611 4599.5866 7165.6615 22801.7126 48611.534 15036.3327 3800.5008 12311.4699 4772.9308 11234.9064 302342394 dsrB Sulfur sulfite reduction NA Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 4046.1319 16041.7521 3717.8667 4591.7813 2433.9481 355368355 amyA Carbon Cycling Carbon degradation Starch Prevotella histicola F0411 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella histicola; 4186.836 5342.1221 7701.5155 5647.6891 5123.0039 6755.4058 6351.1517 4931.5008 6909.3928 3019.5907 4455.8256 91228674 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 3469.8652 3574.6305 354815247 atza Organic Remediation Herbicides related compound NA Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 3291.6062 4795.5829 4795.5829 6165.2086 4266.4313 6229.2118 5820.2202 4896.1261 5359.9116 881633 actin_amoebozoa Other Phylogenetic NA Acanthamoeba castellanii superkingdom:Eukaryota;genus:Acanthamoeba; 3521.5108 234391.8939 12626.5203 2609.4457 2609.4457 5066.601 60561.7003 2775.104 8975.9288 2812.9767 168830541 EF1a_Jakobida Other Phylogenetic NA Andalucia godoyi superkingdom:Eukaryota;genus:Andalucia; 3502.0588 57866.3824 4157.4944 3805.8429 5146.97 5272.5042 4543.8987 2775.2407 7321.7589 3642.9218 5661.2765 2152.9099 2818.4544 3263.5038 5394.6323 345091296 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 3917.4251 3989.5593 3639.1129 381379418 soxY Sulfur Sulfur Oxidation NA Rubrivivax gelatinosus IL144 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax gelatinosus; 16145.8367 5231.5715 4027.4683 6110.5183 192282905 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4671.2174 12552.2873 4295.7291 65044.6351 7956.3019 4518.5742 5116.3965 8361.8405 5603.4122 1953.2678 3385.8891 6214.9142 6398.9033 164455428 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10667.6467 3361.0332 2376.5008 4035.7362 4178.542 7069.7572 5893.3224 38439.5055 14662.7885 3456.3021 312598747 pcpe Organic Remediation Herbicides related compound NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6044.288 5549.0608 8008.7081 220905976 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3713.3828 3879.4392 1708.7796 291313710 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 14306.1426 13218.7475 2295.8651 2081.6747 7229.7237 3359.1315 13748.8693 1680.005 3004.5709 300354752 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus gasseri JV-V03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 3117.5473 4921.0669 56678478 tktA Carbon Cycling Carbon fixation Calvin cycle Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 11897.7866 3463.8923 15118.4034 8263.7092 4750.1116 2288.0739 3056.1582 8513.4678 196190850 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2753.0738 78535.9633 5877.1711 3693.2363 4529.8737 5828.0967 6922.7822 3742.5804 2845.0263 2389.644 4509.96 49066418 xylanase Carbon Cycling Carbon degradation Hemicellulose Cochliobolus carbonum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Cochliobolus; 8201.2306 383295458 badh Organic Remediation Aromatics Other aromatics Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 3508.6568 2517.9224 227467138 tktA Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3861.3276 6231.354 4321.3078 3634.9717 308068245 inulinase Carbon Cycling Carbon degradation Inulin Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3463.7028 6261.8946 4464.2239 4251.4389 4892.5117 7067.1535 7045.7139 5651.925 2059.9671 4005.018 190687208 norb Nitrogen Denitrification NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 10509.1733 2218.6453 2218.6453 8024.3229 163962142 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. OP5F superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4293.0803 5874.8891 9429.7717 2466.1508 4690.041 23876.8764 325270996 amyA Carbon Cycling Carbon degradation Starch Prevotella multiformis DSM 16608 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multiformis; 11850.6854 3005.199 3005.199 10143.3829 77978604 phn Organic Remediation Herbicides related compound NA Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 15992.5853 10167.6507 6326.9595 10461.7059 15627.7109 4888.828 1629.5023 3930.4207 7915.1945 261205200 mannanase Carbon Cycling Carbon degradation Hemicellulose Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 8216.2473 58674.8235 58674.8235 6697.3046 157285702 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4326.1652 2210.9691 2210.9691 6406.7949 6928.381 3467.4973 5167.8547 214036170 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 16109.4626 3815.2566 4517.7266 3151.6573 9096.4887 316948756 phytase Phosphorus Phytic acid hydrolysis NA Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 3372.8676 4129.031 109678.7591 3683.268 4916.9644 2837.6156 6707.7078 3664.7151 4185.1129 4561.6426 4872.4436 2108.3291 6182.7893 8388.2583 6319.3486 1964.0522 3425.9541 3682.3505 2087.345 6418.4769 251849046 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Ruminococcus sp. 5_1_39BFAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 3316.5331 357919438 cellobiase Carbon Cycling Carbon degradation Cellulose Pseudoalteromonas sp. BSi20652 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 3381.3948 332377132 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 14588.4533 6167.8436 257777832 amyA Carbon Cycling Carbon degradation Starch Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 5715.7449 307947171 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 4178.332 384527090 amyA Carbon Cycling Carbon degradation Starch Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 6298.5623 323495987 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 35651.2861 4594.2869 66788.8114 74835.2551 282898450 PRK Carbon Cycling Carbon fixation Calvin cycle Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 3556.3635 5930.8485 319956120 soxY Sulfur Sulfur Oxidation NA Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 3190.8286 349687723 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 3731.445 4030.4283 5738.5033 10133.5001 5134.5353 3041.8544 11239.6362 9246.9837 5467.1921 6297.1743 2558.8629 255281831 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bryantella formatexigens DSM 14469 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Marvinbryantia;species:Marvinbryantia formatexigens; 8446.6448 4306.4691 11404.5574 5482.5745 12076.9218 8453.1548 1849.9127 3974.1465 2375.9711 9134.4765 323707332 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta moutnovskia 768-28 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 6169.8327 91978714 soxY Sulfur Sulfur Oxidation NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 16233.1155 179349968 arra Metal Homeostasis Arsenic Detoxification Natranaerobius thermophilus JW/NM-WN-LF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Natranaerobiales;family:Natranaerobiaceae;genus:Natranaerobius;species:Natranaerobius thermophilus; 5116.9301 384128472 exaa(moxf) Organic Remediation Chlorinated solvents NA Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 3274.8474 4421.6224 3808.0668 4431.8201 4431.8201 8872.9967 6813.3542 5872.0877 2918.0958 5613.1321 2490.766 8403.5404 6951.5074 7012.2642 3202.0071 2892.2819 4980.9291 60476359 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5509.7403 312883415 amyA Carbon Cycling Carbon degradation Starch Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 8327.6187 5311.6741 4145.5697 3191.7894 7229182 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea autotrophic bacterium ORI-3 superkingdom:Bacteria; 47699.7833 32315.2139 30116.119 77820040 nirs Nitrogen Denitrification NA uncultured organism 3665.5997 3998.2274 6946.3732 4422.1445 5942.8301 4703.6446 5361.2914 4541.9878 6211.5637 2226.2263 6652.3379 315312403 gdh Nitrogen Ammonification NA Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 3049.4066 394230.9088 110588896 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2928.9809 5729.8589 7862.1197 5131.3682 2605.2127 8519.4348 2925.7948 2528.0062 358380384 linb Organic Remediation Pesticides related compound NA Trichoderma virens Gv29-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma virens; 29344.9159 270513439 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 3457.1807 12227.4845 240104942 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 8376.0001 53758136 atza Organic Remediation Herbicides related compound NA Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 3268.6932 11572.267 61213.2448 4375.0165 4375.0165 9809.6283 6047.7285 2733.6338 2510.6855 156527057 arsc Metal Homeostasis Arsenic Detoxification Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 4836.3891 13524.7984 2543.7374 7776.1294 119490654 amyA Carbon Cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 15757.6702 7825.7038 5273.2411 333441052 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6959.0181 299739936 cellobiase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3471.6789 5731.1795 5731.1795 3136.6983 2144.7095 24421471 nirs Nitrogen Denitrification NA uncultured organism 3754.7493 8566.9464 93591.4432 7454.8437 4052.4942 2645.1958 9835.0319 2903.2621 11738.1104 7972.7079 6797.0759 2511.2247 3517.9583 6024.6919 222119686 amyA Carbon Cycling Carbon degradation Starch Macrococcus caseolyticus JCSC5402 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Macrococcus;species:Macrococcus caseolyticus; 6389.1097 2305.2989 2305.2989 269929964 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 3810.3719 67002.2568 256259616 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 3506.0963 5022.1499 5851.66 3383.9648 3917.246 2770.0156 8279.4775 378730715 tfdb Organic Remediation Aromatics Chlorinated aromatics Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 3722.1874 3439.0889 1736.3956 288191098 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5372.3795 2633.8047 2633.8047 237758283 amyA Carbon Cycling Carbon degradation Starch Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 2720.4294 2017.3448 2017.3448 2334.2425 3629.7886 3805.4792 313104758 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4891.9231 30111.6495 3954.798 3922.3043 6264.856 2514.69 8390.0801 2008.2469 4425.9708 21125.1685 138895299 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 2961.4697 64083.0459 6306.5676 8944.4671 6153.7282 11707.5389 144905833 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7349.6907 4696.7478 4712.1986 6134.0191 3875.9553 8644.8269 2074.287 3055.1722 1988.8458 242784327 endochitinase Carbon Cycling Carbon degradation Chitin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 11201.892 8343.3862 12212.5844 7936.9612 17659.3737 6602.7115 6196.049 3157624 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 6555.6087 68402.55 167654233 cda Carbon Cycling Carbon degradation Starch Anaerostipes caccae DSM 14662 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes;species:Anaerostipes caccae; 4551.6509 3790.2309 4350.5316 3918.0814 2314.2117 2314.2117 7673.7978 4478.1368 5667.7552 2377.38 2638.9487 6525.7552 8657.7292 3839.8588 7470.2514 1625.429 3716.6459 3376.3674 289780457 aromatic_peroxygenase Organic Remediation Aromatics Other Agrocybe aegerita superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Bolbitiaceae;genus:Agrocybe; 10280.8899 5951.1245 10692.5882 312168934 pgk Carbon Cycling Carbon fixation Calvin cycle Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 4136.5352 4585.2647 6556.5338 9603.6335 5097.791 5097.791 12858.3439 5610.897 10830.9131 5723.1066 6239.9086 2777.009 158434689 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 3697.7547 5060.4236 4123.3105 4288.2534 7277.3974 6335.2987 46096678 ara Carbon Cycling Carbon degradation Hemicellulose Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 3371.869 322411030 amyA Carbon Cycling Carbon degradation Starch Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 6282.4481 10625.1678 6011.8482 5385.1029 2940.7453 25445.6847 32895054 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2973.4534 3359.4639 5107.2112 4217.2971 60476249 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3225.7396 86860.5953 4624.8569 3410.3909 10468.6026 5430.4124 9575.5378 9419.3805 2469.3927 7169.9438 7033.4116 3319.991 3934.8134 5729.9401 324319267 pme Carbon Cycling Carbon degradation Pectin Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 3266.6702 60032.0117 3626.9865 7944.1134 11051.3688 4117.242 2538.0323 6568.1167 5179.242 1896.0027 2909.3388 3174.7135 2155.8685 51872765 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 17064.8906 312168584 xylj Organic Remediation Aromatics BTEX and related aromatics Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 3689.399 70405.0067 3771.0915 4074.5505 2021.2478 2021.2478 3585.2103 6571.1639 2008.6928 3251.664 7563.5232 3467.1234 2770.2058 3668.7364 330684046 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Staphylococcus epidermidis VCU121 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus warneri; 10176.4831 4848.4605 36750.2119 151302284 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacterium corrodens superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 3234.505 153804544 napa Nitrogen Dissimilatory N reduction NA Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 3580.7256 323471410 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 5249.8205 27380033 phta Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 54832.28675 62089.5525 4604.7477 9735.595 7664.0397 319939610 amyA Carbon Cycling Carbon degradation Starch Streptococcus anginosus 1_2_62CV superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus anginosus; 5243.9082 254271905 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 5236.9278 3333.7109 76926.4063 7076.2464 7675.6223 7148.9795 5113.9799 2662.2711 5795.5372 4652.2531 5282.0702 3728.5652 119477004 arsc Metal Homeostasis Arsenic Detoxification marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2950.2532 242770592 tfda Organic Remediation Aromatics Chlorinated aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3252.3588 3770.3603 3724.6594 125290.7751 3372.491 3372.491 28080.697 5342.052 2170.1707 8182.9294 3048.8476 357018444 linb Organic Remediation Pesticides related compound NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 2961.5146 3876.6989 2238.9988 2641.1124 1714.0331 3035.2307 3476.7579 119490278 RgaE Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4260.8951 4452.5924 4411.8295 4183.6073 3357.9487 315119548 ara Carbon Cycling Carbon degradation Hemicellulose Parascardovia denticolens DSM 10105 = JCM 12538 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 3194.0481 7039.8098 4824.8666 4333.568 20599.0801 5952.2693 2083.3771 4742.8786 2106.6346 37548684 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4025.1071 5843.724 6125.3993 224802186 urec Nitrogen Ammonification NA Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 3264.4794 3642.9945 3746.2843 3746.2843 8412.6943 5199.3402 5411.4992 126035103 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3060.8531 5826.5223 48995925 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 20135.5 170134506 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Burkholderia ambifaria IOP40-10 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 3250.6495 3026.3685 3026.3685 9118.6016 4411.708 4471.9031 12167.0176 5484.3993 328861959 Sir Sulfur sulfite reduction NA Melampsora larici-populina 98AG31 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 3430.693 7213.0654 3783.4173 209536294 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 8615.5552 6307.0845 7926.8123 3936.5689 24872.2477 353193549 one_ring_12diox Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3283.4593 39824.4052 2207.9471 2207.9471 308390247 aoxb Metal Homeostasis Arsenic Detoxification Acidovorax sp. NO-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 3226.1821 4645.8268 3769.1588 365972609 endoglucanase Carbon Cycling Carbon degradation Cellulose Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 10272.6684 3410.3432 126635911 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4361.0457 4244.8936 3895.8068 7329.5573 3028.2853 3028.2853 5784.658 5229.6856 4174.7677 3925.8713 1843.0018 6638.5308 85069138 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9800.3021 8026.8019 2595.2284 2595.2284 6907.4552 10995.5999 3215.3352 14087.937 5168.3027 3343.862 3552.5899 268608710 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 6887.8964 2328.2004 2328.2004 3210.5904 4737.2412 9365.1229 3138.919 4451.0543 2661.7221 5399.5475 238783848 arsc Metal Homeostasis Arsenic Detoxification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 2911.3962 4808.3881 4237.8288 4100.7515 5989.1737 2931.9958 4781.2653 2138.3032 2987.4369 3487.0979 2412.045 6793.2398 146743238 arsc Metal Homeostasis Arsenic Detoxification Leptospirillum ferriphilum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 3702.3034 4561.0278 4581.6543 5653.3571 149905197 RgaE Carbon Cycling Carbon degradation Pectin Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 5639.3643 357940179 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3331.5445 95488.9186 6021.1823 3962.221 2685.4626 343395849 pula Carbon Cycling Carbon degradation Starch Streptococcus constellatus subsp. pharyngis SK1060 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus constellatus; 3298.6747 319413911 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 2971.1105 4560.989 7125.1709 3021.7932 297568804 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfurivibrio alkaliphilus AHT2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfurivibrio;species:Desulfurivibrio alkaliphilus; 3095.3997 40397.7886 13338.5414 4862.2608 4611.8482 4611.8482 4448.7376 3760.263 2382.6961 17350.3044 4713.3926 9631.7236 1682.7599 2649.5531 6462.4692 396086620 arylest Organic Remediation Aromatics Other aromatics Alishewanella aestuarii B11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alishewanella;species:Alishewanella aestuarii; 8601.0425 3788.3861 4235.508 384072996 mer Metal Homeostasis Mercury Detoxification Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 3444.6856 1934.5987 1934.5987 118169099 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 175706.276 7571.3273 44579.9087 17347.1699 4844.3368 4131.4762 2909.6128 115390426 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3729.8734 3776.0305 9947.2932 5173.9641 5433.4547 4472.6955 10086.5106 2257.5504 11116.4003 3647.317 3238.1278 2710.9361 5841.8045 89952512 alginase Carbon Cycling Carbon degradation Alginate Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 3542.0712 5152.6432 1831.9427 1831.9427 3548.4443 5446.0315 1933.6074 365882611 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4149.4614 62710.4003 18678.0763 5579.0075 14269.8292 9717.0958 23591.6019 255007657 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 4875.1488 7487.8551 89241926 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2825.1127 2853.8305 6332.2804 23108.0421 4361.7953 3357.5354 10164.0653 7025.4205 219545715 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanosphaerula palustris E1-9c superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanosphaerula;species:Methanosphaerula palustris; 6619.8681 7227.3958 14316.5796 2229.6116 301795680 arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8714.1505 7094.5597 4440.246 2553.5505 2553.5505 6824.671 4104.0817 4325.8689 2075.8165 4441.2959 3082.1609 88162.1757 238714041 cueo Metal Homeostasis Copper Detoxification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 19627.0705 2921.1524 2921.1524 20614.2599 12167.8941 5506.2242 2926.7522 10309.5932 116753569 arsc Metal Homeostasis Arsenic Detoxification Methanosaeta thermophila PT superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta thermophila; 6078.9238 70728715 nitro Organic Remediation Others NA Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 5120.5165 6696.2519 379989627 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2850.5734 61474.9782 5388.0019 67904116 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2822.6339 68742.7002 3245.6974 3635.8503 5418.9059 6888.072 2683.6203 262014334 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylellina parvicollis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylellina; 3660.6903 4048.283 6300.717 2489.0674 8938.6857 5460.0892 2712.8551 3637.3643 2760.8418 146404996 atzb Organic Remediation Herbicides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 333579.9901 3922.5329 2785.7649 2467.5751 2467.5751 6348.4021 2473.6719 1580818 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 3702.1317 40050.9982 316934467 fccab Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3798.3856 4124.4973 5711.5455 2733.4706 2733.4706 48287.3145 13342.7335 262221252 arylest Organic Remediation Aromatics Other aromatics Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 3813.8235 85211.8129 4057.5186 7235.1566 5432.6419 4403.2266 7423.3053 3423.0151 2476.6065 9414.3846 158449904 bphF1 Organic Remediation Aromatics Polycyclic aromatics Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 3410.2577 64092.6692 3689.6984 5912.9228 5365.9402 7711.6964 2319.8375 8156.822 2166.4854 5063.6065 1745.3604 3144.4441 3098.4558 2306.3849 5930.29255 261191624 protease_serine_fungi Carbon Cycling Carbon degradation protein Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 3190.5899 3475.8745 75965.3805 3649.6865 3449.5319 2915.905 4719.1277 6579.197 6449.0577 4554.4026 7418.5675 1819.3671 3145.8582 2509.0349 4448.3211 157376939 cysJ Sulfur Reduction NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 4631.7586 141034.7098 2880.8325 12942.1673 3270.0157 3321.5531 8079.6998 2535.6121 14543.2151 3738.5131 4697.2298 2330.4053 3032.127 2077.3286 4633570 nosz Nitrogen Denitrification NA uncultured bacterium ProP superkingdom:Bacteria; 39126.901 7315.0897 7315.0897 3742.7203 254414338 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 3436.9998 30259.1824 3909.7384 5028.6186 5834.5133 10404.7854 91807170 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 3245.3874 25275.8687 19048.8753 22496.4503 2701.0019 300332686 Sir Sulfur sulfite reduction NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 28741.4218 4936.2261 8026.8842 2460.34 2460.34 6185.3064 3614.6038 5972.7273 21726.5551 5801.685 2646.9744 3775.0144 324964559 tehb Metal Homeostasis Tellurium Detoxification Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 3942.2085 3673.1781 66044.2436 3943.9957 5030.1295 9968.1052 8026.1175 4791.6727 1804.1201 2543.1897 3116.2891 110634996 ophc Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 5484.7454 110637991 arsc Metal Homeostasis Arsenic Detoxification Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 3738.4805 3880.4137 4396.7557 5941.9829 2202.6542 4094.5697 1848.938 3395.2626 387937039 glucoamylase Carbon Cycling Carbon degradation Starch Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 5163.29 2217.8934 2217.8934 4125.8575 3985.0884 2044.5974 4049.3575 342810420 chitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus ATCC 33789 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 2948.7031 6132.671 2659.2965 7989.4062 5265.6737 13405.8516 4192.2987 13775.9798 9611.6497 4551.5019 5353.4371 3095.1193 3944.5791 384395938 amyA Carbon Cycling Carbon degradation Starch Mycoplasma canis UFG4 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma canis; 8056.6887 4458.1075 5076.5148 14212.2374 3716.7339 383355179 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 306 str. F0472 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 306; 10154.2654 85055.5438 198273196 rgl Carbon Cycling Carbon degradation Pectin Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 6645.3211 262275741 rubisco Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 3837.4322 4735.4778 67918.9105 7077.4873 4159.5685 5576.5913 4424.9613 5940.9695 2047.6404 3097.034 2688.6788 7973.0795 221635744 hcab Organic Remediation Aromatics Aromatic carboxylic acid Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 4555.9082 5082.4409 4643.3268 4928.4752 2047.9618 2776.5932 407257648 one_ring_23diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 4800.5079 78172.2448 10034.4071 4907.6233 2574.0376 2574.0376 3948.1012 6192.443 5064.7676 2740.0514 14355.2077 323365674 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 8444.5858 3839.2248 30307.1026 4182.1566 4182.1566 11379.6067 3040.0777 2734.9443 3600.7258 16557.8051 11980.9862 5573.0334 8038.1769 398033689 B_lactamase_A Virulence Antibiotic resistance Degradation Novosphingobium sp. AP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 5060.2586 6040.6606 43523.7239 11800.5685 6352.7018 359688781 sqr Sulfur Sulfide Oxidation NA Leptospira licerasiae serovar Varillal str. MMD0835 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 4246.4501 3244.1441 390575465 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 5229.5876 17801.8082 22132.6445 3562.1943 5499.1938 84452353 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 3296.0218 5094.2539 3484.414 4449.3302 2648.6273 3001.4481 1985.252 5680.1636 1900.106 2496.356 4068.5046 88807325 endochitinase Carbon Cycling Carbon degradation Chitin Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5167.7961 4709.5218 3524.2611 390434373 B_lactamase_A Virulence Antibiotic resistance Degradation Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 3715.9767 3955.1645 7554.6613 7554.6613 6014.8295 4756.8141 4775.1802 2620.3216 5725.0847 6968.3723 2755.4769 3085.9312 3668.41 5862.6461 99083227 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4614.4516 6585.5151 3110.2891 3110.2891 3780.3457 8601.7575 4508.3487 4756.6251 2537.8874 2547.4968 7138.1756 12698.9696 7874.7679 8359.9928 2260.0897 4290.4359 4833.1843 2098.1207 10036.6229 223886487 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 3265.4298 7215.3645 308231041 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2865.0405 6282630.5532 4404.563 2923.034 8710.1782 7537.0488 4004.1134 5080.0347 6602.0788 2747.5139 2951.9478 6521.2211 9148.3057 3890.0802 5233.078 3326.8168 3707.5924 3386.5961 6189.0662 334104166 tfdb Organic Remediation Aromatics Chlorinated aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 8240.3341 87307270 metc Metal Homeostasis Mercury Detoxification Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 8140.8316 7284.6456 7284.6456 3999.8672 6198.5768 9479.1755 2064.8542 2757.9734 338234128 linb Organic Remediation Pesticides related compound NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 3444.9248 72741.7756 5944.4237 10208.4168 2838.0404 6489.0635 1891.6829 5740.1848 36292.3296 384066113 mer Metal Homeostasis Mercury Detoxification Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 5940.6517 56709183 ben_bcla virulence NA NA Ruegeria pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 6467.4369 5030.0524 4298.332 21227.3884 21227.3884 4247.4465 8556.023 51635.0994 6200.374 2304.2265 2877.5387 8539.2507 5670.1672 6561.9689 13966.2796 8617.2884 5162.8724 198265487 gdh Nitrogen Ammonification NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 3377.1208 4363.4261 4456.5111 2127.2528 1713.2556 2518.3849 363623807 terc Metal Homeostasis Tellurium Detoxification Bacillus smithii 7_3_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus smithii; 3891.9988 5020.9535 85228.5899 4169.6375 3895.9096 3660.3388 3660.3388 8770.0639 12491.6678 4189.2224 5110.2607 10784.6371 2858.2683 3944.9759 14005.0873 5122.1169 8381.0124 3141.2566 3412.6401 4033.8342 2575.1473 158425516 atzd Organic Remediation Herbicides related compound NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 15580.0759 3997.7608 6751.5638 4248.7358 365133825 amyA Carbon Cycling Carbon degradation Starch Subdoligranulum sp. 4_3_54A2FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 25610.8834 3513.8076 3620.6288 3070.2717 35210484 GAPDH_Euglenozoa Other Phylogenetic NA Eutreptiella sp. MBIC11104 superkingdom:Eukaryota;phylum:Euglenida;order:Eutreptiales;genus:Eutreptiella; 4410.238 306867954 cysJ Sulfur Reduction NA Actinobacillus pleuropneumoniae serovar 12 str. 1096 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 3813.3823 66873.1733 6014.5891 2915.8409 374322171 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 3855.4583 3683.0352 75952.6367 4733.1696 5410.9839 5825.2616 4372.1603 7720.8872 3540.3131 13516.3594 5304.258 5143.4925 1967.6926 3564.1572 5742.9717 186686706 chitinase Carbon Cycling Carbon degradation Chitin Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 4378.7215 4750.0953 12438.2195 4296.9165 2370.3231 85826036 alkk Organic Remediation Others NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5495.4619 14257.4301 44589.9472 347580655 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 4625.5623 23116.9366 9954.4474 2267.5595 75303.0568 166366397 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Microcystis aeruginosa NIES-843 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 58650.9322 21744.2604 83571896 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Moorella thermoacetica ATCC 39073 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Moorella;species:Moorella thermoacetica; 10919.8418 4344.0354 3005.7685 16368.5877 1891.3294 6617.768 288914845 endoglucanase Carbon Cycling Carbon degradation Cellulose Azospirillum sp. B510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 14107.2957 17441.3605 2632.7373 2632.7373 324025801 ara Carbon Cycling Carbon degradation Hemicellulose Sphaerochaeta globus str. Buddy superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta globosa; 9462.8447 59747.2693 6904.3432 4112.051 3143.7649 5947.8483 2472.952 14181.254 2722.2445 4494.6728 3952.4723 3281.8634 183217863 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium animalis subsp. lactis HN019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 3521.6078 6402.6992 5367.1914 5572.6245 6010.9708 5393.1696 6565.2624 3817.1456 3943.579 7806.947 67522631 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 3149.4352 2474.0213 6565.7138 5265.2862 9318.829 1736.1497 3539.774 196226211 arsc Metal Homeostasis Arsenic Detoxification Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 3079.4372 69133.2261 4701.4031 4112.297 6011.6405 4296.1866 240277176 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 3636.7681 8877.8635 4323.2194 7366.5834 4472.1424 4342.7458 2972.9641 5318.0582 3482.9617 281487339 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4027.4716 3477.3325 6097.1505 6145.4176 4668.8207 4125.1026 2377.1934 229817842 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 9718.5998 4839.3345 3198.1897 96679.3535 9319.5919 16350.6018 4884.9254 4884.9254 3417.7098 8423.0278 12347.7061 7811.8276 7941.6857 4042.3009 5546.3103 2720.9182 6338.4832 3703.8232 8984.7811 6507.7881 23561.3775 2644.6987 11120.6492 6750.577 2458.6787 8500.8482 282163575 nifh Nitrogen Nitrogen fixation NA Methanocella paludicola SANAE superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanocellales;family:Methanocellaceae;genus:Methanocella;species:Methanocella paludicola; 3474.5583 4810.097 2324.817 7650.9357 3971.9903 317053620 amyA Carbon Cycling Carbon degradation Starch Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 6518.6471 5275.3325 3633.926 7575.8539 7575.8539 8561.8777 17823.1383 10759.4432 3249.7273 6824.2543 11968.6425 6978.4087 119816076 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2968.8692 57877.5926 3621.5571 4751.4253 3293.6232 3222.0944 4565.475 2536.138 5563.456 3595.7674 5553.0616 1822.3371 4032.3748 2303.4279 9710.4138 254390239 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 3578.647 3806.6812 4010.9062 5729.5252 2910.5582 2910.5582 6199.8017 13959.4179 5277.2853 2064.2825 2821.3901 327254663 mhpc Organic Remediation Aromatics Aromatic carboxylic acid Escherichia coli STEC_7v superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 3963.9673 4153.0455 4797.0762 9267.4005 24349.9875 97901.509 2499.6409 4199.7815 59892266 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 7495.3802 398798322 trze Organic Remediation Herbicides related compound NA Pantoea sp. GM01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 18112.2302 5540.5873 4920.8103 23596.3029 2778.7715 2778.7715 3736.0555 3563.0493 8567.6094 4481.4809 3617.0782 5109.4686 3449.0315 46401069 ppx Phosphorus Polyphosphate degradation NA Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 4003.5964 4780.1014 4780.1014 8182.5498 4852.9221 3057.8338 5969.4712 5706.3236 3149.7299 115394402 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 18646.1993 4241.98 2403.4493 3269.1816 3269.1816 6285.4087 4831.5438 2691.8853 3175.7472 9101.4245 3821.542 4439.9072 15552.3957 37548682 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4017.2474 3653.926 6596.2857 11855.0661 13964.2228 116743228 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4481.1294 63979.9108 7019.8059 4601.9206 3307.3033 8231.0807 12212.8637 5270.738 5972.408 2431.8078 3213.5514 3406.729 5566.3179 374631586 mer Metal Homeostasis Mercury Detoxification Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 3129.7062 6192.7498 4889.623 3202.8876 3821.1606 6804.3787 3308.2512 2878.699 144897389 nirs Nitrogen Denitrification NA Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 3011.9366 5608.5251 2216.1441 2216.1441 8958.7764 4248.9587 2468.6228 2439.1742 2054.3792 3722.0031 6325.027 2711.1616 3522.0928 2967.2793 4441.38 46307862 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 13365.4505 6485.5168 5427.8439 6013.9499 3565.8473 2437.9806 5729.7391 4935.6389 18112.2611 49471.1234 2772.1408 2622.7595 140844067 urec Nitrogen Ammonification NA Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 8683.3299 187729571 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 37941.3923 3230.6079 4617.0486 11679.0572 1758.5915 2255.3406 319996026 nirs Nitrogen Denitrification NA Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 3655.7943 845764.5515 4260.334 240281736 phytase Phosphorus Phytic acid hydrolysis NA Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 6062.3748 116251366 ppx Phosphorus Polyphosphate degradation NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3730.0541 3508.4442 6982.9433 5131.0188 4182.3234 1857.4158 6036.5904 365972133 urec Nitrogen Ammonification NA Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 3621.2544 3958.8173 6763.4945 5317.6394 2160.8313 3725.0878 380736236 atzb Organic Remediation Herbicides related compound NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4854.3827 3971.5241 11920.9609 85914.189 4281.6135 2027.7111 2027.7111 5806.7885 4589.2946 8389.0596 5309.361 17129.6125 2298.1704 8898.4765 89893108 nifh Nitrogen Nitrogen fixation NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 3488.7934 4273.8816 7330.2643 7330.2643 6028.7542 4202.1673 2982.4887 9106.9219 9708.4803 5753.8584 1866.698 2744.5876 154278439 dehh109 Organic Remediation Chlorinated solvents NA Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 5143.178 302491092 nifh Nitrogen Nitrogen fixation NA Desulfovibrio fructosovorans JJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio fructosovorans; 3826.8506 7744.1789 3007.2214 254447379 phytase Phosphorus Phytic acid hydrolysis NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5087.846 4503.3849 73593.5164 10977.1113 6691.9131 3022.7143 3022.7143 3570.0027 10622.774 7914.387 8422.7096 2602.9546 4826.4033 2785.2057 9030.7325 5794.1711 1853.89 6424.4209 5822.8552 3991.3902 304399222 cysI Sulfur Other NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 34228.8549 4082.9344 9164.027 5915.1784 4803.3983 4803.3983 3613.6695 106468.5297 11142.8782 29607.8061 6052.5076 5612.7814 4947.4057 11114.6507 144342.9493 5683.0174 4768.4957 3236.6779 4745.6339 18034329 dsrB Sulfur sulfite reduction NA Desulforhopalus singaporensis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulforhopalus; 4087.5458 338764950 urec Nitrogen Ammonification NA Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3488.2429 5161.9023 4946.5546 103946.1272 3212.9013 4040.2283 4603.9032 4603.9032 6668.5249 7794.5831 2232.1038 2749.5211 3909.9115 2295.1703 3629.0018 27421.6862 116743235 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 240212.8639 11864.8738 3303.877 291070610 pme Carbon Cycling Carbon degradation Pectin Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 3523.7346 9036.716 3971.2827 8876.202 10949.1214 2227.5813 2952.739 7406.9961 357008177 glucoamylase Carbon Cycling Carbon degradation Starch Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 7787.9536 2613.2596 2613.2596 46307980 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 16780.3073 4349.4123 9204.4911 4259.4708 2157.6451 9877.5578 3500.0228 3073.2273 8129.7032 6269.6922 401725091 nitrilase Organic Remediation Aromatics Other aromatics Bacillus alcalophilus ATCC 27647 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus alcalophilus; 3250.0194 4009.523 72418.8311 3905.7375 5929.1069 5929.1069 3697.6071 7853.5009 5369.444 3901.5051 2550.5954 41471.8227 5539.9599 6192.0136 2881.688 4103.7603 126140618 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Penicillium expansum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 11354.8938 357056992 xyla Carbon Cycling Carbon degradation Hemicellulose Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 3523.2348 5724.2644 89512984 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 7068.9832 2344.1488 5446.0271 7078.9962 3246.4931 3246.4931 3996.1906 8329.3457 10958.8113 2108.4896 1991.2952 4826.2992 2995.0058 260588896 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hansenii; 3058.9272 5815.9698 3109.7617 3555.4352 4221.7273 5120.6348 6889.32 2049.491 2642.1119 2718.0829 342830785 amyA Carbon Cycling Carbon degradation Starch Streptococcus parasanguinis SK236 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 2856.9897 76058144 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3396.7334 15856.2232 3482.0932 6375.8266 6158.3956 2391.2106 5577.5156 5822.8106 119698451 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5214.544 122090915 amyA Carbon Cycling Carbon degradation Starch Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 4763.1035 3668.368 5023.9464 10726.4325 6779.4577 3589.1317 3657.1491 4132.9123 2153.4668 332377318 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6671.7542 76001.1473 4145.4201 181902.1147 2308.7852 2308.7852 14891.0132 10564.3835 3623.9065 39963215 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6806.3537 76577502 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2971.527 4015.0088 14408.7847 14408.7847 2124.49 2598.0615 2456.4892 34397683 ppx Phosphorus Polyphosphate degradation NA Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 18464.3748 2563.0772 2563.0772 160942077 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 5185.2321 260406928 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter sp. RUH2624 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter nosocomialis; 2788.0131 12292.4354 5459.5679 116804590 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 4301.0005 2852.1588 6437.3726 4723.8048 4095.8515 7133.5501 2255.3709 6981.8537 8479.9688 2457.5287 5834.5272 2089.5659 7437.5097 77378765 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3296.4988 2375.7572 2219.3474 2219.3474 5483.0051 10640.2824 8482.0084 3393.7188 27070.7982 8703.4864 261892135 chitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 17228.5806 5692.386 2654.6284 9313.7539 2980.0621 5611.4354 3470.1493 4044.2483 7083.9353 5958.7575 2748.2228 16565.3097 5496.5098 2238.1828 4318.6902 19739.3844 3161.4693 58448.364 399020318 catb Organic Remediation Aromatics BTEX and related aromatics Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 5657.3591 6984.3219 60524.6178 3740.1943 3740.1943 17897.3769 49613525 nirb Nitrogen Assimilatory N reduction NA Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4908.02 2886.9781 26336.425 271501599 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4710.0795 5971.7083 4251.7623 5958.4028 10204.9808 4130.9877 5592.4888 2179.4741 1255466 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 4521.868 57864.0115 6199.0407 4308.9602 13605.2651 2375.9762 2727.3428 2847.9465 10689.3128 4104.5993 2694.7247 4135.5252 2236.9798 4820.7846 187478460 arylest Organic Remediation Aromatics Other aromatics Bordetella avium 197N superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella avium; 6720.5721 110370.8304 12146.7243 320127784 mer Metal Homeostasis Mercury Detoxification Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 46666.2035 2186.7964 2186.7964 20694.6517 23200.1139 41367182 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 3357.2674 4998.0802 1691433.3553 7804.8079 6220.8346 146282666 trzn Organic Remediation Herbicides related compound NA Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7769.1486 3630.6892 4132.6852 164455728 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 26595.2145 5882.1854 7371.8851 332592233 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4671.8454 261373322 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 2974.9384 365418366 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5167.8379 5336.9904 14877.3631 3012.3885 3012.3885 6433.5698 4067.5082 7695.3246 4218.274 11161.2965 6986.8842 5450.4158 4259.3062 10639283 cda Carbon Cycling Carbon degradation Starch Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 3561.7662 2221.2327 2606.6562 3154.5642 88779691 pgk Carbon Cycling Carbon fixation Calvin cycle Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 3313.6714 2551.8368 5570.1448 5570.1448 5700.6285 4586.4549 7358.2193 12469.449 5902.0017 1877.2753 3514.3151 309777040 amyA Carbon Cycling Carbon degradation Starch Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 27380.8936 111071930 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3401.7587 6001.4315 388065109 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 6119V5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 4041.473 2981.1964 2859.4328 2859.4328 3214.6895 17385544 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2920.8264 2561.0269 58249.7063 4374.1036 7335.8889 4335.3856 5682.0176 5495.0442 9015.1834 5102.7464 7569.7363 2492.2324 3272.4512 2870.7656 5236.5628 149360962 one_ring_12diox Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 4128.6969 4040.5928 3934.0302 5310.8164 6513.5467 5202.9627 3559.7687 2545.8062 6191.8544 316981144 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 5473.8188 5223.9749 8956.8502 5382.2107 7120.8787 163811733 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 350953.0137 3663.6086 397408.7318 7467.5264 2793.0767 5904.8146 312063.5119 134093764 arsc Metal Homeostasis Arsenic Detoxification Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 11210.6225 5677.2862 388538542 terc Metal Homeostasis Tellurium Detoxification Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 3642.0627 339442581 dsra Sulfur sulfite reduction NA Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 3913.0196 4780.9624 4084.869 107785.0278 2215.1716 2215.1716 3950.4171 10797.6543 6603.8246 11610.0536 9604.9672 7038.1695 3005.8584 4187.3047 8789.013 2837.7046 12770.0675 10088.7835 8823.3012 3098.3031 5477.0095 5154.5279 2887.4199 7906.9304 196249101 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4201.0715 9869.4955 1868.9095 5179.5666 167668106 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 32198.1768 298247483 ara Carbon Cycling Carbon degradation Hemicellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 14495.2163 4725.8453 5774.423 497875.2075 6382.2858 5207.7651 3922.6955 2534.928 337752117 pme Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 10110.1919 20190.8975 4190.4922 6881.6305 2008.3353 46307852 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11674.6429 5150.892 24065.0845 3921.1792 2597957 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Kluyveromyces marxianus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces; 4513.5004 2512.306 5945.7139 9292.4569 8605.1821 6331.9088 5029.1907 380311.0412 10820.7736 2340.1802 3441.2386 6301.3469 2375.2031 11004.4569 4791.6203 6320.2786 2077.7133 4277.3577 4806.617 2519.1722 5077.8609 121609874 ophc Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 3497.585 17630.9364 5485.1475 3611.4077 163747541 dehh109 Organic Remediation Chlorinated solvents NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 2793.0024 3371.3415 675330.6347 1998.2834 3855.2676 2514.9049 66801953 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 3238.7697 169863293 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 2841.5218 58650.5232 2250.1908 2250.1908 3777.5087 9194.829 4830.8153 2768.5699 148657248 mer Metal Homeostasis Mercury Detoxification Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 3945.917 4985.093 29293252 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2925.1151 3680.1578 3952.4622 254510196 alkb Organic Remediation Other Hydrocarbons NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3224.3796 13268.2012 4348.0169 20384791 GAPDH_Euglenozoa Other Phylogenetic NA Diplonema sp. ATCC 50225 superkingdom:Eukaryota;order:Diplonemida;genus:Diplonema; 5550.3116 4246.7912 4246.7912 7292.1917 2457.3592 4411.2481 3849.9889 237500428 alginase Carbon Cycling Carbon degradation Alginate Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 3057.4214 7383.2134 8016.5596 3164.5072 398323063 ben_bcla virulence NA NA Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 3899.0138 139003239 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3312.4559 4386.3291 334103608 bphb Organic Remediation Aromatics Polycyclic aromatics Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 5563.2136 3635.2222 16358.4811 227893606 ppx Phosphorus Polyphosphate degradation NA Lactobacillus ultunensis DSM 16047 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ultunensis; 4336.6751 72483.1142 4805.2181 3597.5247 3847.3445 4764.6109 4630.1754 2711.1098 2024.5243 378807243 amyA Carbon Cycling Carbon degradation Starch Mycobacterium intracellulare MOTT-02 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium intracellulare; 3488.5686 4649.9849 9265.246 28938.8083 3053.7589 3210.3619 157804875 aps_apra Sulfur adenylylsulfate reductase NA endosymbiont of Inanidrilus exumae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 240264.4307 2320.4739 134301098 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 5255.7645 5525.9296 377567426 linb Organic Remediation Pesticides related compound NA Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 3917.0393 4839.9146 9163.5919 6279.1664 8968.9366 4522.153 68164616 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14972.6134 4581.6923 2792.0352 2792.0352 5998.9008 2549.7638 2305.3953 8545.6471 4238.0176 2857.4635 3048.7633 320029728 ppx Phosphorus Polyphosphate degradation NA Serratia symbiotica str. Tucson superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 50085.9889 7166.5292 15648.6974 4122.6933 16077767 rgh Carbon Cycling Carbon degradation Pectin Bacillus subtilis subsp. subtilis str. 168 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 154790.5108 34573.1762 11088.1071 11088.1071 218674830 ara Carbon Cycling Carbon degradation Hemicellulose Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 3399.8027 2876.5704 2876.5704 3933.9721 1847.4847 4245.591 218672159 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 3816.5795 7265.4171 2366.2355 63029727 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3486.9338 5575.49 6252.8034 4474.5346 4712.3516 3195.5229 5445.7371 152977999 amyA Carbon Cycling Carbon degradation Starch Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 3775.243 5615.4001 59084.1226 3377.1921 3661.4713 1901.7101 1901.7101 7695.5022 4976.414 4972.2626 6281.2665 5896.5381 2149.4349 7615.4991 4173.3325 5327.3367 1647.1741 2662.331 3530.2321 2337.5911 7414.1163 242805382 nagg Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3181.367 14475.7487 12025.0627 8993.6762 3074.0006 686594.4249 4062.6367 226317802 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 4204.7729 2647.3077 2647.3077 3810.6516 5260.6507 4644.3681 2482.9334 5923.8054 1750.1975 4575.8418 2399.4867 386689541 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 3632.4862 7249.3162 2436.4078 2436.4078 3677.8261 5416.3656 207985.5894 3181.3044 18834.0116 5539.2445 365791987 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3312.1343 442687.8783 1940.8049 1940.8049 4689.5593 2549.1049 6110.9022 7864.7514 374572880 pgk Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8886.1699 4973.3455 3105.5671 5985.2175 5135.9144 7851.754 2309.9757 4642.2734 4603.4891 4118.386 345647590 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4043.6454 6942.2748 3841.3104 340788379 arsc Metal Homeostasis Arsenic Detoxification Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 4015.9003 10893.7567 4081.6831 7775.9242 4983.1129 4983.1129 10103.7432 4149.4097 6015.6682 7967.4749 5208.5215 5228.5826 4752.4772 6705.2428 3973.3399 11702.474 11521.1725 6788.848 5592.181 6459.9502 4506.9953 3804.2941 302418122 cpnb Organic Remediation Other Hydrocarbons NA Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 5124.7683 3763.6743 67898.0963 8823.184 25300.1783 2518.6853 194245747 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. TFD39 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5803.2613 3206.4614 7078.3121 10020.5655 335042269 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 31241.9703 294943956 actin_Perkinsea Other Phylogenetic NA Perkinsus marinus ATCC 50983 superkingdom:Eukaryota;order:Perkinsida;family:Perkinsidae;genus:Perkinsus;species:Perkinsus marinus; 3465.8846 4667.67 5277.7798 7530.2604 7530.2604 4959.3204 104852.9747 2798.3648 4328.0023 7101.3886 356667122 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5439.6067 4256.9898 70600.2869 4455.374 9548.702 13714.5494 13714.5494 3771.3594 8086.143 5008.4555 4406.2024 3971.0077 7010.9664 3090.9474 23051.1744 9589.9438 2963.2323 4232.7429 4222.7158 218322939 nrfa Nitrogen Dissimilatory N reduction NA Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 3606.495 8049.7619 217501675 arsc Metal Homeostasis Arsenic Detoxification Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 4661.4954 3072.5399 65812.1545 10954.4276 11440.4363 11440.4363 2983.4334 3533.4713 7885.4114 10244.5654 2991.0149 4915.944 389806288 arsc Metal Homeostasis Arsenic Detoxification Rhodanobacter thiooxydans LCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter;species:Rhodanobacter thiooxydans; 4161.9546 7185.2487 145225542 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 3468.8061 7796.3396 5434.2682 151352 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 13209.4778 9212.821 18854.9731 2228.6364 3800.131 13432.0951 161382130 vana Carbon Cycling Carbon degradation Vanillin/Lignin Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 6105.8505 2966.2408 2319.5606 4816.7661 383762835 cysI Sulfur Other NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 4081.3618 17715.161 23795.4301 142429.8024 302412066 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5692.6209 2994.1483 157679435 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4347.1329 4170.0413 5968.4494 9455.675 2752.4738 3308.7949 3117.863 299145141 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 11685.2692 17142.4284 153901556 urec Nitrogen Ammonification NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 4057.9134 7513.7953 5287.5007 3179.2411 326796846 one_ring_12diox Organic Remediation Aromatics Other aromatics Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 22005.3952 158335383 nitrilase Organic Remediation Aromatics Other aromatics Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 6439.6808 6167.9722 5326.3247 15817.0705 12940.7957 7514.5568 7320.5497 5746.0333 87239764 nirs Nitrogen Denitrification NA Paracoccus sp. R-24615 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 3622.5616 223586093 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46553.6561 120164.8958 10456.7605 37310.6327 20278807 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3394.1658 12062.3692 3412.6416 56477215 pchcf Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 5261.1638 23304845 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium stercorarium superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae; 4202.1807 22902.1492 6322615 badh Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 3460.9937 2738.9113 3423.9329 29829537 tfda Organic Remediation Aromatics Chlorinated aromatics Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 4224.1739 3386.8134 14163.8617 4601.7114 5002.5586 339608950 chitinase Carbon Cycling Carbon degradation Chitin Prevotella pallens ATCC 700821 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella pallens; 4564.354 20937.0303 7473.9024 15323.4952 5718.9783 343798036 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5146.7931 55235.8328 55235.8328 6337.8511 9745.0504 71000771 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 8125.2822 209499814 vgb Virulence Antibiotic resistance Degradation Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 5906.9794 4927.5013 39935422 nifh Nitrogen Nitrogen fixation NA Rhodopseudomonas palustris CGA009 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 5279.589 268611683 endoglucanase Carbon Cycling Carbon degradation Cellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 3732.5397 3926.96 3399.0549 1613.2526 14994640 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6878.8411 2709.2739 2709.2739 2137.3077 341594408 gdh Nitrogen Ammonification NA Megasphaera sp. UPII 135-E superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 10404.8314 73763130 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6474.8557 3169.7205 3169.7205 5461.219 18313376 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 41289.887 25900706 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5295.3313 33785.4249 6805.6402 7370.1724 3304.3108 318100456 ppk Phosphorus Polyphosphate synthesis NA mine drainage metagenome 3573.678 2927.2038 36092.3406 365177736 mer Metal Homeostasis Mercury Detoxification Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 6230.6933 5969.1598 7040.9741 7040.9741 4445.6895 5102.9327 6413.3082 103484223 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5406.9597 3653.0808 93056.8636 3595.8507 4627.0771 2556.8443 9567.3405 3746.8196 74038384 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3381.9906 3718.3448 359372177 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas psychrotolerans L19 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas psychrotolerans; 4083.182 2989.0485 212009559 amyA Carbon Cycling Carbon degradation Starch Thermococcus onnurineus NA1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus onnurineus; 4168.1658 7121.9111 6052.7483 2504.4864 302434560 bphd Organic Remediation Aromatics Polycyclic aromatics Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9682.0086 3559.6021 1913.0115 1913.0115 9605.2011 9522.0177 6442.6923 9944.5222 4266.4698 5456.2953 4708.6473 2793.0395 3691.5994 99083115 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6170.2613 3166.8258 51869936 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 17695.5588 5068.3863 4158.1632 5009.0105 3157668 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 29471.9685 5714.7483 349573619 gdh Nitrogen Ammonification NA Neisseria shayeganii 871 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria shayeganii; 3932.7426 3635.7262 3635.7262 2456.9405 6533.1977 2951.6173 6766.6609 1937.0071 5344.3371 2401.263 302674158 endochitinase Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 6325.9866 2839.6531 2481.726 324972061 pme Carbon Cycling Carbon degradation Pectin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 9965.9296 6650.5423 5263.5619 217503525 nitrilase Organic Remediation Aromatics Other aromatics Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 5317.0183 4168.8051 2995.5862 5058.2233 157804843 aps_apra Sulfur adenylylsulfate reductase NA Thiorhodovibrio winogradskyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 726486.7645 302507011 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 3456.2538 99037978 ppx Phosphorus Polyphosphate degradation NA Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 10474.325 219864053 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 540740.6427 4578.1077 4578.1077 21521.5835 19497.5118 34826.0489 2795.5491 3359.7658 77378635 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12731.5073 8066.9311 17575.9561 7005.5144 2826.335 5314.1112 113526287 arylest Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5837.7866 4860.4603 4520.1297 4520.1297 58729.5632 4016.3696 7706.1829 2086.3417 1549.5568 254440419 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 5463.5104 4466.3338 16322.8581 5399.6629 1967.3312 8301.6158 354567553 arsc Metal Homeostasis Arsenic Detoxification Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 5608.7112 5402.894 30567.3306 30567.3306 2888.352 10854.7164 5378.5673 7167.2476 7328.637 13053.9931 90200171 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 3990.3138 3013.408 5638.7365 2412.0214 2121.8777 2731.2984 2636.3272 167359267 arsc Metal Homeostasis Arsenic Detoxification Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4975.4368 84694.7674 5363.5148 3251.3228 3251.3228 3402.9541 4651.3257 28613.9689 4502.4514 3059.4228 2871.2026 365418304 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4014.1345 22681.809 7105.2671 4235.9944 8409.6927 1790.4113 302562336 ppx Phosphorus Polyphosphate degradation NA Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 5915.848 9207.3227 9207.3227 3835.1726 4125.0397 5001.559 4314.166 167749742 ara Carbon Cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 6745.0844 89952336 RgaE Carbon Cycling Carbon degradation Pectin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 3330.9417 327836.9079 2583.3518 5642.5406 2607.9672 5752.2578 7636018 ppk Phosphorus Polyphosphate synthesis NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 4358.4196 2878.7975 2564.3618 353676547 arylest Organic Remediation Aromatics Other aromatics Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 3979.8643 9871.6417 15844.2067 342797578 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 89798.6623 21007.7586 62149264 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4858.9033 7164.8498 5584.9767 10939.0233 5616.2209 4637.7518 2427.33 2341.9364 7499.2488 17372.7922 8317.1844 12118.8524 5725.3689 2834.1626 126665515 mer Metal Homeostasis Mercury Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 16784.3745 15074.8692 23172.5083 6870.3946 8671.8292 365902088 badh Organic Remediation Aromatics Other aromatics Lactobacillus malefermentans KCTC 3548 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus malefermentans; 3985.4339 353193793 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 44038.3501 13451.7463 333981954 arsc Metal Homeostasis Arsenic Detoxification Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 6229.5239 11162.9173 11162.9173 4640.2099 262372183 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 7550.401 14646.3194 6064.4935 5796.716 142001069 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5015.6926 83530.6818 256423518 alginase Carbon Cycling Carbon degradation Alginate Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 7594.1816 34494851 urec Nitrogen Ammonification NA Haloarcula aidinensis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 3709.5487 2968.569 3834.4987 62390077 narg Nitrogen Denitrification NA Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 4327.2834 3997.1514 4852.0355 117920777 arsc Metal Homeostasis Arsenic Detoxification Shewanella sp. ANA-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 4760.4089 189172254 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3606.528 1835.0619 152287 nifh Nitrogen Nitrogen fixation NA superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 3413.3888 193876549 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. MB superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides; 5278.7826 2619.0588 3337.4127 3547.1926 3489.6237 7306.4876 5152.2976 3188.1295 3910.0141 213953991 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga sputigena Capno superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sputigena; 7280.3188 7803.4833 11728.623 11728.623 3776.1993 9417.84 5958.7295 1875.0209 3119.6004 10292.7263 18034251 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulforhabdus norvegica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Thermodesulforhabdus; 3657.1169 3157706 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 3296.8272 2342.6258 378549600 poba Organic Remediation Aromatics Aromatic carboxylic acid Citricoccus sp. CH26A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Citricoccus; 4234.7816 4259.9685 159889868 endoglucanase Carbon Cycling Carbon degradation Cellulose Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 4094.2402 8617.2907 219868.9325 12175.0469 182679567 xylanase Carbon Cycling Carbon degradation Hemicellulose Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 4609.1143 196190595 phn Organic Remediation Herbicides related compound NA Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 79160.4349 376243139 gdh Nitrogen Ammonification NA Corynebacterium diphtheriae CDCE 8392 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 4711.5611 389765580 amyA Carbon Cycling Carbon degradation Starch Microcystis aeruginosa PCC 7941 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 6189.1586 3955.9926 3955.9926 3026.2348 11126.4514 8056.5495 1953.4258 5566.9421 338832968 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4925.7787 269925451 amyA Carbon Cycling Carbon degradation Starch Thermobaculum terrenum ATCC BAA-798 superkingdom:Bacteria;genus:Thermobaculum;species:Thermobaculum terrenum; 79038.0652 343095835 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3892.1162 6502.0185 91699462 catb Organic Remediation Aromatics BTEX and related aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 37942.3883 182412691 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 3546.6187 4023.2362 3204.9863 4731.3338 1775.2296 2665.035 398055987 phdk Organic Remediation Polycyclic aromatics NA Rhizobium sp. CF080 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6160.8914 60162.0613 290583068 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4478.9704 5547.0198 4913.7184 2589.9043 2589.9043 3703.8778 13066.9217 3307.1456 4520.0979 2845.3218 4383.1031 294884143 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroB7_4W superkingdom:Bacteria; 4569.0927 10793.2404 2979.9615 6143.7964 4805.0569 5076.4388 10423.4308 2918.1907 13751.5121 2664.2454 3286.4949 2865.1386 78188401 ppx Phosphorus Polyphosphate degradation NA Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 681505.504 7915.3279 12068.1606 327310906 mer Metal Homeostasis Mercury Detoxification Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 4143.1391 89250.9413 3729.7089 4708.0818 2788.3762 7621.3904 4451.7045 4701.3264 5553.6838 8982.8306 2528.6834 3075.7027 6239.6018 2437.6817 9183.9856 6090.7845 3075.4067 3725.0472 3477.7576 2253.0909 8371.3475 295395311 terc Metal Homeostasis Tellurium Detoxification Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 4682.8528 62309.4365 2642.1695 308808432 nitrate_reductase Nitrogen N Assimilation NA Ostreococcus tauri superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Ostreococcus; 7421.0858 156523009 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 5422.9723 4527.6259 11350.2287 14208.8047 4528.3765 7440.7931 2460.6694 11961.2214 5028.3551 2653.373 14278.4884 351717344 soxY Sulfur Sulfur Oxidation NA Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 7459.5325 4036.6259 7126.3049 124389571 nifh Nitrogen Nitrogen fixation NA Halorhodospira halochloris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 9516.6524 76058085 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4974.8838 5930.8466 24185.9508 313135012 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 5312.991 8538.5976 4887.5025 345299625 catechol Organic Remediation Aromatics Other aromatics Enterobacter asburiae LF7a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter asburiae; 6280.9159 3122.1842 72649.9692 6051.3031 2679.5906 7180.8419 4301.9395 2696.6568 3270.3366 10927.7837 334279522 cellobiase Carbon Cycling Carbon degradation Cellulose Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gallolyticus; 4659.362 421953172 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8494.8964 4154.6776 3775.6795 3555.4491 3555.4491 5932.2808 4644.6675 4183.6669 5867.5895 1876.2011 2896.9449 6617.6832 6251.8369 296415287 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 5135.979 6739.2272 2338.8978 2649.9535 2799.1056 112463125 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 82232.9955 392594389 badh Organic Remediation Aromatics Other aromatics Coniophora puteana RWD-64-598 SS2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 13117.1311 2919.0759 5265.9154 4279.0052 5895.5273 6871.2324 2207.7157 2935.3736 62591.7015 152069362 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 5842.2991 5222.0043 261283127 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4127.9789 6056.5299 9469.8648 6127.5119 14639.0007 9162.4449 7945.0659 162453214 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 6103.7172 2328.6769 371486324 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8353.4887 116119805 cysI Sulfur Other NA Leptospira borgpetersenii serovar Hardjo-bovis L550 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira borgpetersenii; 79378.0356 18902.1824 45701.8204 7261.8972 13648.77 2076.6763 48746.761 270298310 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 5842.4497 4593.0901 4593.0901 11861.4205 116619936 chitinase Carbon Cycling Carbon degradation Chitin Candidatus Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 12569.503 3435.9043 3435.9043 15992.6049 2446.7431 325475268 amyA Carbon Cycling Carbon degradation Starch Treponema denticola F0402 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema denticola; 4881.1041 316908513 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides eggerthii 1_2_48FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 4643.4459 7995.0397 5112.595 2083.6034 160879955 chitinase Carbon Cycling Carbon degradation Chitin Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 724434.4437 71383844 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3815.1951 3415.3903 376319108 cellobiase Carbon Cycling Carbon degradation Cellulose Melissococcus plutonius DAT561 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Melissococcus;species:Melissococcus plutonius; 6617.8297 4015.7713 3531.3553 3670.5497 7201.9052 4598.5456 2405.3845 165880081 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6471.7705 26106116 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas resinovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8275.0028 8097.5624 4619.7086 4031.5645 4355.6656 2498.3052 9379.7267 4302.2128 1911.2781 3528.092 2790.4044 2175.8083 4780.9124 366088072 amyA Carbon Cycling Carbon degradation Starch Lactobacillus zeae KCTC 3804 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 4636.6752 5275.1962 5275.1962 2233.9978 187926292 alkb Organic Remediation Other Hydrocarbons NA Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 4123.0058 385193826 nirk Nitrogen Denitrification NA Haemophilus parainfluenzae HK262 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 104066.5451 7665.8803 7665.8803 219965724 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4065.0688 93354864 narg Nitrogen Denitrification NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 311831.1153 197621344 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4482.258 4274.3701 4274.3701 6903.114 291508621 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas alkylphenolia superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3424.1507 6068.6269 6224.2287 5503.6244 5638.1 2813.9539 167519689 mer Metal Homeostasis Mercury Detoxification Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 656477.8521 90954605 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3735.7575 3870.4405 6880.4262 4160.7484 3905.1911 3374.2293 2080.3212 7116.6307 3121.8029 3447.6068 2210.6424 5041.0583 260088754 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 4427.0161 9712.8083 8666.6085 10109.9736 2707.3187 4800.1828 57288.6406 6501.3931 4735.2105 3033.8611 395649338 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 11520.8002 6931.0799 10593.2357 4954.4807 1990.1888 158138848 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3427.0867 169595072 endochitinase Carbon Cycling Carbon degradation Chitin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 28223.8337 7228.1608 12204.3306 38060.8425 3595.0241 4226.3405 5071.1548 44082.9314 335879366 chitinase Carbon Cycling Carbon degradation Chitin Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 31889.5956 24635.4212 9552.9917 384193199 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis BLC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 4239.0894 17984.5979 6892.7932 4700.9924 4240.7049 6787.0123 4117.4929 2588.7842 2245.1349 26082.9474 9234.7049 6545.7967 2328.6496 2716.9397 3174.9052 44559.952 300727663 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 17798.8633 5549.0703 334338986 dsrB Sulfur sulfite reduction NA Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 3884.8282 7599.2872 4055.0303 4333.035 4238.0801 3116.6137 2872.0351 9650.49 4850.5451 4477.8411 3008.2701 3656.1166 4997.407 116061989 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8079.9883 4699.5588 326414055 soxY Sulfur Sulfur Oxidation NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 4653.1676 2519.9068 92525.8161 3708.4685 2206.7116 4565.6089 71914756 exoglucanase Carbon Cycling Carbon degradation Cellulose Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 5773.2751 5789.8355 100987.3124 3592.0801 6622.119 4533.5465 2310.9253 5113.7252 4571.0836 4812.6462 88643188 dsra Sulfur sulfite reduction NA uncultured prokaryote 4762.4797 14518.3473 5640.7837 4534.8023 5358.5359 5898.6658 115371531 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4317.1521 2120.7527 256833098 cellobiase Carbon Cycling Carbon degradation Cellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 3473.5237 8622.4586 197210524 arsc Metal Homeostasis Arsenic Detoxification Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 4236.2022 269096232 ara Carbon Cycling Carbon degradation Hemicellulose Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 6623.6535 52389.1828 11799.4047 6383.9583 384219369 ppx Phosphorus Polyphosphate degradation NA Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4419.2595 3570.6009 2433.3147 256741019 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiomonas intermedia K12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas;species:Thiomonas intermedia; 5134.2511 54400.5658 5730.2115 2247.3136 2247.3136 2937.4127 7922.191 5199.6734 4474.8622 5867.1938 2622.0818 7778.819 7961.8951 60510.7377 5313.4037 2904.161 3499.5759 3231.7239 343497508 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 13426.7718 4800.9415 288940823 fccab Sulfur Sulfide Oxidation NA Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 65002.3817 3194.6388 3194.6388 8577.8756 10365.2734 16457.8692 6173.3119 2379.4494 2721.5781 76667367 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3712.9024 2534.714 3408.2038 8149.8758 8149.8758 75364.2726 9748.6297 6728.9267 26453.3318 157081617 ppx Phosphorus Polyphosphate degradation NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 5984.2753 2658.4311 13625838 gdh Nitrogen Ammonification NA Peptoniphilus asaccharolyticus superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus; 33431.5537 349686268 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 3444.7806 5160.6555 2452.8224 2452.8224 92974.5617 320123527 dsra Sulfur sulfite reduction NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 12560.1245 1878.2576 331698063 one_ring_12diox Organic Remediation Aromatics Other aromatics Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 13854.803 6284.1359 260622386 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 4922.1275 3404.521 4574.2272 4369.9227 7724.8956 4535.8477 2717.5749 5119.3605 90413632 FBPase Carbon Cycling Carbon fixation Calvin cycle Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4748.5103 4537.4698 59685.3037 4252.6031 3353.8635 2124.3727 2124.3727 2592.1498 8250.2994 3494.5469 6081.8074 2550.6085 2648.6387 3232.5709 9420.1608 4146.0998 5672.6967 3302.7034 3274.6419 4743.7914 4689.8623 148474834 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4531.5606 3903.6573 8548.8261 8134.1159 3591.4845 393783980 xyla Carbon Cycling Carbon degradation Hemicellulose Bacteroides salyersiae CL02T12C01 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salyersiae; 5063.4265 4889.5558 3293.5196 3293.5196 4589.6385 7034.2919 2102.6506 226690.7848 3157540 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 311750.7835 102492.3031 4200.7009 111066.1151 6031.672 63364.7874 13956.4891 3836.7904 266675.8514 62421696 nifh Nitrogen Nitrogen fixation NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 3542.6945 3623.7931 3849.0182 3986.8981 2463.053 2543.7026 227075841 gdh Nitrogen Ammonification NA Corynebacterium accolens ATCC 49725 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 60924.6941 65044.3099 3975.178 5913.7054 5913.7054 4084.3087 5839.1868 15992.4242 6128.5825 3759.1856 2677.2734 3527.334 323453014 actin_Stramenopiles Other Phylogenetic NA Aureococcus anophagefferens superkingdom:Eukaryota;class:Pelagophyceae;genus:Aureococcus; 4441.0805 4651.765 28466.9732 5626.9184 2354.2394 5856.043 5063.2205 6464.0194 2515.4656 371761468 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium oral taxon 082 str. F0431 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae bacterium oral taxon 082; 7688.8081 3024.9714 1974.7192 1974.7192 302920452 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4522.1811 117768.8571 5649.5897 2993.4208 6618.0306 4867.5791 4860.2105 3086.4827 6704.7211 2639.7217 9684.9854 6557.6464 1837.6442 3952.5557 4330.0265 2792.6846 358013190 ppx Phosphorus Polyphosphate degradation NA Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 8456.4897 398337567 alkb Organic Remediation Other Hydrocarbons NA Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kmetyi; 37818.8175 77744.307 3804.7931 2712.7826 2712.7826 5270.5932 5333.983 1824.2698 3772.9843 3318.2109 258582030 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio mimicus VM603 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 71373.4081 6074.4006 4451.9557 3588.8999 226241359 cysJ Sulfur Reduction NA Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 6050.3259 59664.6485 8749.3947 8017.7408 8017.7408 3718.4348 6389.4758 4562.4582 8948.0915 14487.4376 10123.5705 4957.4177 5247.1018 2810.0264 4034.2762 2412.4915 302338429 amyA Carbon Cycling Carbon degradation Starch Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 12383.8477 3530.5093 7834.4706 3864.7468 5532.7395 115388195 Sir Sulfur sulfite reduction NA Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9832.3869 3975.6541 71916140 rgl Carbon Cycling Carbon degradation Pectin Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 3839.0146 18447.7443 6118.01885 4136.4767 2619.4395 9726.7901 302419857 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 17562.7084 270346271 cellobiase Carbon Cycling Carbon degradation Cellulose Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5070.8709 1985.6091 1985.6091 8827.7831 4504.9393 3833.65 13358856 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter sp. M-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 12696.2951 119473591 glucoamylase Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 13264.7028 158342673 amyA Carbon Cycling Carbon degradation Starch Deinococcus geothermalis DSM 11300 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus geothermalis; 3654.5987 3825.528 5803.4419 480935.881 2368.6525 2484.3711 4522.4104 4201.6122 2746.2383 5268.6783 340749943 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Fusobacterium mortiferum ATCC 9817 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Fusobacteriaceae;genus:Fusobacterium;species:Fusobacterium mortiferum; 4132.3867 100350.9465 3971.2178 6214.0345 3375.7317 4996.4239 4166.6719 21193.9374 2230.758 5511.6338 3799.6952 3179.0874 5191.3793 46519955 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7819.6862 330466510 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 4544.8029 10782.9381 2338.5089 2203.9609 294791190 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 4792.1282 67097.5551 6537.5961 46716.7853 46716.7853 7778.6905 3772.4798 3280.4637 407281184 pcag Organic Remediation Aromatics Other aromatics Thalassospira profundimaris WP0211 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira profundimaris; 5441.1146 403201656 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 3515.0207 61080.2596 5477.9939 3219.1907 5716.4821 4057.0017 5123.2561 4249.7807 2893.6392 2803.8545 3030.675 4017.9921 2188.2172 333743510 ophc Organic Remediation Aromatics Aromatic carboxylic acid Delftia sp. Cs1-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 4017.959 299126726 dehh109 Organic Remediation Chlorinated solvents NA Halalkalicoccus jeotgali B3 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halalkalicoccus;species:Halalkalicoccus jeotgali; 11130.1924 296921807 terc Metal Homeostasis Tellurium Detoxification Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 10311.537 2001.7163 2941.1413 4638.3296 227347649 gdh Nitrogen Ammonification NA Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 7569.5867 24585.7826 2298.2019 2298.2019 1710.8262 3870.3453 3014.9505 288869986 chitinase Carbon Cycling Carbon degradation Chitin Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3393.1669 2136.1207 5938.9076 2904.6585 270298498 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 12155.4501 288315539 cysJ Sulfur Reduction NA Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 4713.413 1662.2213 33391423 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4164.6381 6821.9879 6821.9879 4082.9298 2133.2439 5275.1291 1817.7695 3618.8592 89113906 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 16177.12 296426441 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4565.5684 149276790 arsc Metal Homeostasis Arsenic Detoxification Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 17737.3311 73660924 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 3801.7841 74606.4737 7144.0442 7595.2795 3192.6341 3192.6341 11417.8909 6530.551 8983.7233 4193.0707 149399.7757 6605.0817 6043.9158 1741.4193 3418.8133 356415203 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 4800.283 24520.416 4633.7022 32398247 amyA Carbon Cycling Carbon degradation Starch Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 12046.2681 10507.5023 254473529 soxY Sulfur Sulfur Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6146.4334 4332.0189 22792.3737 2557.8327 15027.1899 5390.058 5503.2616 407276427 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4061.242 7236.4214 4507.0713 6429.9756 228699051 amyA Carbon Cycling Carbon degradation Starch Bacillus cereus Rock3-44 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 622137.0183 384371756 urec Nitrogen Ammonification NA uncultured bacterium superkingdom:Bacteria; 14610.0061 288927165 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella buccae D17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 7102.4654 13472464 mer Metal Homeostasis Mercury Detoxification Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 7746.2899 5027.1772 13493.8334 4905.4629 3165.2415 3366.8546 88804719 nbac Organic Remediation Aromatics Nitoaromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 4414.1551 806397.4933 26986066 soxY Sulfur Sulfur Oxidation NA Marinobacter sp. HY-106 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 5543.1724 316949763 chrr Metal Homeostasis Chromium Detoxification Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7711.1774 4774.4265 99030541 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 13212.907 2001.3413 2001.3413 13056.0787 4538621 cmua Organic Remediation Chlorinated solvents NA Methylobacterium chloromethanicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 4598.3314 399109800 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas pseudoalcaligenes CECT 5344 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 3652.5781 3597.2632 2926.8718 111024925 cpnc Organic Remediation Other Hydrocarbons NA Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5219.9737 5352.43 5600.2048 5802.2227 2745.5934 5122.5893 209504217 xylanase Carbon Cycling Carbon degradation Hemicellulose Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3872.8081 11007.318 1607.907 347761684 pgk Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 7779.8008 4700.2816 2471.8419 2471.8419 6789.3404 5799.3299 3767.4389 3942.4734 3164.4987 6667.2927 3081.2693 118424328 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7318.9873 1463774.6851 2131.3997 85089935 lactase_fungi Carbon Cycling Carbon degradation Lactose Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 5860.1191 82801435 alkb Organic Remediation Other Hydrocarbons NA bacterium alkW69 superkingdom:Bacteria; 261938.4011 6935.614 386902.0455 12531.8863 11250.444 4233.0169 2462.3675 2462.3675 8897.0338 11051.4799 2632.6273 3197.9636 13458.4897 118171122 ppk Phosphorus Polyphosphate synthesis NA Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 4102.1332 104783.5997 4364.7611 7316.7787 4094.3485 3003.7009 90581477 ppx Phosphorus Polyphosphate degradation NA Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 5903.7206 116048328 nifh Nitrogen Nitrogen fixation NA uncultured soil bacterium superkingdom:Bacteria; 10059.7808 241364704 amie Organic Remediation Aromatics Other aromatics Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 199858.7269 4365.7073 2734.7429 206677665 linc Organic Remediation Pesticides related compound NA Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 19887.7938 3847.8979 3847.8979 109452557 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4491.3597 262276588 ppx Phosphorus Polyphosphate degradation NA Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 9494.9473 295663382 linc Organic Remediation Pesticides related compound NA Paracoccidioides sp. 'lutzii' Pb01 NA 18522.9668 4899.5552 6151.66035 4040.4033 4040.4033 12388.0148 6407.7657 7930.1053 4441.8489 198248723 glucoamylase Carbon Cycling Carbon degradation Starch Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 4805.6134 108616.1671 3763.8617 3892.1284 6468.7485 2428.2036 5752.0565 18452.2841 3617.9167 4509.6219 145240665 protease_serine_fungi Carbon Cycling Carbon degradation protein Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 9663.9223 1639.3981 123400916 gdh Nitrogen Ammonification NA Trichomonas vaginalis G3 superkingdom:Eukaryota;order:Trichomonadida;family:Trichomonadidae;genus:Trichomonas;species:Trichomonas vaginalis; 3795.4786 7713.1526 4326.6172 4709.7333 9455.4225 21221895 beta_agarase Carbon Cycling Carbon degradation Agar Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 669346.6146 385261238 amyA Carbon Cycling Carbon degradation Starch Streptococcus sp. SK140 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 90057.8229 306527544 arsc Metal Homeostasis Arsenic Detoxification Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4155.6092 5036.4829 6767.4238 5124.1665 147886068 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 11802.3435 3904.404 307770626 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 5507.6793 386725030 Sir Sulfur sulfite reduction NA Paenibacillus mucilaginosus K02 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5352.5756 5395.0019 50960.5756 306488217 nirs Nitrogen Denitrification NA uncultured organism 3718.8229 3728.3014 7571.0208 5180.7383 4265.1278 10728.4756 1887.6603 3031.27 302864233 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio sp. 3_1_syn3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 4435.0121 3435.6115 5586.8604 119481985 Sir Sulfur sulfite reduction NA Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5035.8955 3198.151 52245.1178 10154.1001 2364.5025 33316.8595 4331.0977 2400.8969 147744762 nasa Nitrogen Assimilatory N reduction NA Vibrio sp. 'A10 isolate-4' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4135.2805 1922.7295 1922.7295 4000.4883 119774792 glucoamylase Carbon Cycling Carbon degradation Starch Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 3838.5947 91700830 bphF1 Organic Remediation Aromatics Polycyclic aromatics Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 4643.9084 2468.8558 2661.0689 2194.6624 2475.5125 118001963 proO Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 4921.2404 8644.5761 10050.7929 188992543 ara Carbon Cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. B100 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 5507.3449 19289.4512 5436.2139 4859.3697 6092.7736 262166066 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus VM223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 72936.7032 40135.8018 197339167 mannanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces sp. SPB74 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 13587.4912 48608.1788 5533.5929 393791486 atza Organic Remediation Herbicides related compound NA Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 5500.7063 145020773 cellobiase Carbon Cycling Carbon degradation Cellulose Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 4794.8789 56996.6378 33327.3752 2568.119 2568.119 4058.7159 3861.7898 7429.4761 4963.0483 8359.3887 4481.1039 5938.3619 6480.9799 4965.9728 315045798 Sir Sulfur sulfite reduction NA Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 3861.3049 2944.7426 5366.9459 3928.5625 2952.0438 6960.6663 11129.5058 375263183 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3404.2458 295397990 gdh Nitrogen Ammonification NA Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 5089.9775 229785766 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium angulatum DSM 20098 = JCM 7096 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium angulatum; 4175.1192 62003547 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4010.8971 7356.8561 1790.5368 262372750 tktA Carbon Cycling Carbon fixation Calvin cycle Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 4483.4766 121709449 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3578.9662 4260.0035 1755.4302 170026542 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas sp. TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3875.6779 72565.4248 4309.6982 372325543 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oenococcus kitaharae DSM 17330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus kitaharae; 8605.2476 398226059 catechol_b Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. YR681 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8716.7061 4027.9434 78222053 amyA Carbon Cycling Carbon degradation Starch Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 12588.539 5013.3145 2196.7376 2196.7376 9785.9021 11946.8893 2754.9947 3956.5612 9914.604 5496.7584 72383136 nira Nitrogen Assimilatory N reduction NA Prochlorococcus marinus str. NATL2A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 17005.8465 3078.2915 343774587 PRK Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 119746.9053 300123199 hsp90_Stramenopiles Other Phylogenetic NA Blastocystis hominis superkingdom:Eukaryota;genus:Blastocystis; 6211.0092 255106994 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thalassiobium sp. R2A62 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Thalassobium; 4054.403 2912.2019 2912.2019 2543.2808 1805.0659 189189466 lactase_fungi Carbon Cycling Carbon degradation Lactose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 7023.4206 9994.5797 3050.4115 333478273 amyA Carbon Cycling Carbon degradation Starch Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 15874.8879 8642.5378 23082.2353 8148.4123 1689.1116 4780.7645 255692520 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 3947.7274 291245540 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 5154.8643 77160.5207 5082.9853 154287480 amyA Carbon Cycling Carbon degradation Starch Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 11475.1191 3709.8084 300583001 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylovorus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae; 3690.3771 5092.7343 4622.7188 8232.5296 1619.8988 4446.5252 4313.311 220905867 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6211.539 281199443 amyA Carbon Cycling Carbon degradation Starch Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 109952.0156 115256678 cysJ Sulfur Reduction NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 76664.9319 19101.4708 116612694 poba Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 20157.1111 387125973 tehb Metal Homeostasis Tellurium Detoxification Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 4670.3495 2691.3888 373248998 RgaE Carbon Cycling Carbon degradation Pectin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5342.0808 2505.1769 2505.1769 3729.7759 3382.7596 307700856 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris FB024-16 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 62754.2226 26348.9499 5936.1894 10869.7053 89336804 arra Metal Homeostasis Arsenic Detoxification Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 14371.9356 61340.542 5660.8675 3741.3166 3741.3166 5093.4754 3910.8101 2323.3751 3233.281 259506243 narg Nitrogen Denitrification NA Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 33302.5286 6747.3308 6747.3308 41386573 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lactarius blennius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Russulaceae;genus:Lactarius; 33281.915 219057.2697 3196.3077 3196.3077 374365565 B_lactamase_A Virulence Antibiotic resistance Degradation Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 40696.7496 4662.0666 2002.4543 70998408 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5380.1571 17702.5072 10565.7142 2300.8354 5276.543 11863.6602 5335.6647 126619876 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4566.2008 3641.7918 4765.843 258573427 glx Carbon Cycling Carbon degradation Lignin Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 3975.0773 2102.0888 2102.0888 1691.1037 2174.497 209809090 arylest Organic Remediation Aromatics Other aromatics Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 6302.5576 254282050 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 5463.3241 6016.4176 251782818 cellobiase Carbon Cycling Carbon degradation Cellulose Streptococcus dysgalactiae subsp. equisimilis GGS_124 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 4233.9938 326944239 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 8648.8321 1881.6661 1881.6661 34715.6224 90416128 TIM Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4018.5189 4441.6084 7457.2648 3170.8198 6886.4929 7868.7549 3863.15 5158.3146 2903.9134 73534137 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3582.8661 48430964 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Picrophilus torridus DSM 9790 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Picrophilaceae;genus:Picrophilus;species:Picrophilus torridus; 3921.8843 3663.4358 115516397 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 6113.8208 118439399 nhh Organic Remediation Aromatics Nitoaromatics Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 5137.9155 11039.5684 11039.5684 1933.1558 299800793 assa Organic Remediation Other Hydrocarbons NA uncultured prokaryote 3848.0098 4887.8243 4549.1306 4279.2646 4120.0524 11510.881 3837.7434 2177.9968 83363145 linc Organic Remediation Pesticides related compound NA Rhodobacter sphaeroides ATCC 17029 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 4914.1492 2319.5359 2319.5359 7042.1161 309247270 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3598.6278 8481.0542 4148.8314 3784.5142 146419308 phospholipase_B_fungi virulence degradation NA Meyerozyma guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 3873.347 3047.6207 3791.0877 9589.3451 4232.2596 3089.9815 212585.6785 84778367 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 18386.0141 5352.5671 16846.0276 2396.2691 3786.9565 6680.2922 170940400 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 29598.7062 2104.3629 72396933 nifh Nitrogen Nitrogen fixation NA Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 23709.0582 262204139 cutinase Carbon Cycling Carbon degradation Cutin Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 5709.8261 2887.7493 319418635 ppx Phosphorus Polyphosphate degradation NA Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 9553.8145 158079.3514 3685.2678 5417.0068 17721.5998 6779.0103 3730.5624 5596.0479 2753.6137 5391.5347 8275.7294 3772.6386 3100.27 323525891 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3616.719 2899.2379 4223.585 12210.848 3041.1674 2873.0981 8653.8519 3887.0617 4892.6984 1993.8281 3646.8768 169850838 cutinase Carbon Cycling Carbon degradation Cutin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4781.2117 4436.8696 3682.7399 10439.9888 4795.4102 5342.6213 6462.0297 2337.1246 6578.398 2752.4243 12547.9876 4501.0745 10330.2232 4117.6856 4044.8322 4516.0105 8667.3701 157060121 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5235.2115 2533.8543 83252.6988 2053.1287 3310.2498 3849989 nitrate_reductase Nitrogen N Assimilation NA Pichia angusta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; 3767.1725 289503408 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 5861.042 340841349 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 8123.4839 7705.5928 6330.486 3476.425 258645709 ppk Phosphorus Polyphosphate synthesis NA Dialister invisus DSM 15470 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister invisus; 5421.8181 4268.2727 2454.0583 4683.7381 343429745 Sir Sulfur sulfite reduction NA Sporisorium reilianum SRZ2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Sporisorium;species:Sporisorium reilianum; 708892.5061 2321.649 8232.7756 110667993 atza Organic Remediation Herbicides related compound NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 5125.651 5848.9258 342316520 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 8961.441 10091.3984 3428.6929 153962616 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 8939.1025 63029725 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3741.7571 8904.7193 2506.8922 10177.0296 2492.8118 126635907 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3862.9923 24049.296 398091533 arylest Organic Remediation Aromatics Other aromatics Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 21332.0303 13754.745 3710.0032 3710.0032 10043.9988 6605.3685 3775.1077 23149.3027 4072.562 6559.5747 4269.1817 2340.941 383191161 arsc Metal Homeostasis Arsenic Detoxification Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 11857.4475 94983253 silicon_transporter Metal Homeostasis Silicon Transport NA 3473.0196 3691.9985 50727106 endochitinase Carbon Cycling Carbon degradation Chitin Microbulbifer hydrolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer; 3397.138 4280.9977 4280.9977 6152.2277 67085911 terc Metal Homeostasis Tellurium Detoxification Azotobacter vinelandii AvOP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 3872.0877 5420.0215 8299.4621 5826.066 4595.3856 2338.4369 6708.4609 4453.9325 171465284 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3777.889 323525684 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4874.557 3616.8127 126729851 ppx Phosphorus Polyphosphate degradation NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 4014.3848 356460053 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 55150.9142 298544411 PRK Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 5480.8844 288567640 terc Metal Homeostasis Tellurium Detoxification Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 17402.1702 380733414 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Corallococcus coralloides DSM 2259 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Corallococcus;species:Corallococcus coralloides; 5088.485 347549526 cda Carbon Cycling Carbon degradation Starch Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 11784.6018 4194.7633 11902.0318 3242.4902 118445084 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 5947.5315 46196680 terc Metal Homeostasis Tellurium Detoxification Thermus thermophilus HB27 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 5523.4605 3897.2659 4508.3491 2469.1591 2469.1591 2603.4429 4254.8148 197209502 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22459.0662 4412.7657 7884.6849 9996.41 3675.9116 2378.8915 2595.8262 4546.5005 18114.926 8292.8132 315251152 rgl Carbon Cycling Carbon degradation Pectin Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 616791.7764 377555289 amyA Carbon Cycling Carbon degradation Starch Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 23693.0508 89066.6565 3933.4503 3933.4503 219986602 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia pyrrocinia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 23975.4986 310658214 ppx Phosphorus Polyphosphate degradation NA Clostridium sticklandii DSM 519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Clostridium] sticklandii; 382835.7713 269832033 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 5141.4332 7562.6664 7562.6664 10096.848 4108.9716 4445.4053 4651.7421 160900351 ppx Phosphorus Polyphosphate degradation NA Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 6073.0128 6480.5063 4358.8892 238701757 amyA Carbon Cycling Carbon degradation Starch Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 5034.021 5837.6162 2742.685 2868.7755 3092.3606 283833433 nfsb_2 Organic Remediation Aromatics Nitoaromatics Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 4140.3163 6355.491 6355.491 4812.8381 8188.4795 5228.1987 1810.607 2653.3035 3061.8 339411587 amyA Carbon Cycling Carbon degradation Starch Spirochaeta thermophila DSM 6578 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 10579.9272 6538.7623 95750.3428 2571.3199 159186340 glucoamylase Carbon Cycling Carbon degradation Starch Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9382.3004 2868.4272 3192.8901 3192.8901 13629.9588 1633932.0295 3407.2277 4551.7025 76577464 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8102.8855 3649.6247 16959.5803 5239.7958 2700.3123 4570.5466 3495.2862 2661.2907 6891.3237 302327663 mannanase Carbon Cycling Carbon degradation Hemicellulose Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 13193.5777 1970.1563 4279.5479 116062848 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 66903.6965 329895804 PRI Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4681.6144 5059.9454 6117.3703 3974.7595 119458102 amyA Carbon Cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 4317.5736 343517897 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus pittmaniae HK 85 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus pittmaniae; 3659.32 8549.4157 3628.4735 3628.4735 6331.3597 4532.4588 4436.799 8103.2036 3056.7634 15164.095 407008130 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 3881.0421 2417.9759 74127.0994 4035.5138 2008.5144 2008.5144 3852.8293 9703.0153 2249.6129 3180.5657 2184.8409 207088269 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus oceani AFC27 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 4968.9306 3386.5527 2528.4701 2528.4701 62841.5956 387854179 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 7206.2662 217186 xyla Carbon Cycling Carbon degradation Hemicellulose Thermus thermophilus superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 3991.4621 3717.3889 59688.2633 7349.4222 4121.5815 2823.5308 4973.2516 115259176 atza Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4308.552 4759.7709 160882868 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 5569.6812 5882.7761 14939.8065 3179.7424 3179.7424 6554.1808 3490.9533 91774140 dsra Sulfur sulfite reduction NA Methanococcoides burtonii DSM 6242 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanococcoides;species:Methanococcoides burtonii; 9376.9767 94304.1355 3866.8337 3866.8337 4558.3883 320107389 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 5386.5741 9441.3383 49509.7156 358462605 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CN3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 3782.515 57242.2634 16074.1255 14490.2678 560649 xylanase Carbon Cycling Carbon degradation Hemicellulose Neocallimastix patriciarum superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Neocallimastix; 6733.2372 2197.2364 2197.2364 319413901 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 3585.9378 3478.2593 3899.147 4872.3265 1711.016 5821.4481 398337308 bphF1 Organic Remediation Aromatics Polycyclic aromatics Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira kmetyi; 304448.1077 298492592 pgk Carbon Cycling Carbon fixation Calvin cycle 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 3484.9748 1718.2705 404252201 cmci Organic Remediation Aromatics Other aromatics Sphingomonas sp. PAMC 26621 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4688.5565 52426428 xyla Carbon Cycling Carbon degradation Hemicellulose Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 3704.8458 309951502 arsc Metal Homeostasis Arsenic Detoxification Sinorhizobium sp. M14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 6197.7718 837408.8068 5546.9405 3728.4932 2989.8477 2989.8477 4078.3479 7656.6975 7450.1938 8964.6584 8025.6752 7012.1067 35156.4665 11224.6283 6193.5179 18751.9078 7557.0697 9681.6088 9690.3758 2769.4051 9691.3353 339323788 pcpe Organic Remediation Herbicides related compound NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 7484.8139 39449.9957 31199.6483 31199.6483 4583.1097 2208.4836 2862.9 3451.1366 389580662 ppx Phosphorus Polyphosphate degradation NA Desulfobacter postgatei 2ac9 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter;species:Desulfobacter postgatei; 5775.4791 11470.0522 4853.5072 9210.087 2099.6976 78066288 chitinase Carbon Cycling Carbon degradation Chitin Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 8192.3653 9389.585 11120.4002 7201.5784 16293.0792 160864134 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 6787.3799 4704.3543 3917.5413 3917.5413 5912.0107 134094422 SoxA Sulfur Sulfur Oxidation NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 4871.6147 5228.8841 9997.092 258566501 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 19798.67 317121879 chitinase Carbon Cycling Carbon degradation Chitin Thermaerobacter marianensis DSM 12885 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Thermaerobacter;species:Thermaerobacter marianensis; 5318.8897 3118.8726 4561.6235 357428393 nasa Nitrogen Assimilatory N reduction NA Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 5166.0927 85144.1448 32472046 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 10128.8358 5960.1011 8223.086 3169.9454 332172097 one_ring_23diox Organic Remediation Aromatics Other aromatics Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 3548.4299 4249.6335 4862.6899 9712.9992 6201.7502 1842.7442 3009.6626 4929.9296 302198316 amyA Carbon Cycling Carbon degradation Starch Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 4612.1322 8632.8599 318037726 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3527.7518 7609.6394 2443.427 5902.0229 109391490 chitinase Carbon Cycling Carbon degradation Chitin Yersinia sp. MH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia; 4306.8594 304566.5257 5062.723 3672.3159 308213083 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 63839.9086 241763756 PRI Carbon Cycling Carbon fixation Calvin cycle Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 15741.6463 8010.4698 4471.7351 21458.2468 387843986 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 3554.6557 3465.2141 2450.448 56809539 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3311.5365 3373.5184 8207.7634 4112.2997 23013508 FBPase Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 4495.272 7830.0517 3968.4622 11349.5571 4283.7653 4283.7653 10975.1309 6847.2474 3949.1723 4864.6973 9892.3426 4117.7887 6131.0866 3882.8547 19423.2697 66267666 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. K-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5783.0625 2593.8758 2593.8758 10625.1014 14026.9948 10526.6916 5319.0989 11443.9071 7612.258 10173.4342 10820.2889 2593.4408 154778.0706 5142.0144 373553787 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 24276.7922 3670.7732 390957333 amyA Carbon Cycling Carbon degradation Starch Terriglobus roseus DSM 18391 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus roseus; 7585.4582 90265711 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Pichia minuta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; 5186.1631 4203.7143 1690.3718 95025909 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 70470.3134 6201.4306 170142205 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 3412.4501 6416.1283 3289.389 4777.9124 254506599 chitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3418.0576 3869.7902 3869.7902 3838.3259 5900.4542 1857.2117 2954.8327 3520.1066 2760117 amyA Carbon Cycling Carbon degradation Starch Streptococcus bovis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 21011.0577 48963 xylanase Carbon Cycling Carbon degradation Hemicellulose Butyrivibrio fibrisolvens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio; 21021.8092 3784.8695 3784.8695 94501639 linb Organic Remediation Pesticides related compound NA Oceanobacter sp. RED65 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Bermanella; 4203.6878 66334.9886 455735.0556 3053.5056 3053.5056 69342.4412 38322.0046 5103.634 3806.8614 8118.398 2733.1583 4483.8424 3898.7315 31192.1546 388065280 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 6119V5 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 5692.6936 7309.8277 8778.235 8778.235 3421.5884 6147.0316 6752.3386 139002620 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 11250.5196 3069.6868 4622.5573 9280.5227 5281.8632 3444.878 6411.3462 225405354 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 15534.2659 283788025 chitinase Carbon Cycling Carbon degradation Chitin Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7936.9553 8914.369 192360511 chitinase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7123.3963 3579.5457 3579.5457 294973733 amyA Carbon Cycling Carbon degradation Starch Aerococcus viridans ATCC 11563 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus viridans; 3718.4824 4066.9954 2128.8812 3059.897 354585628 amyA Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 17160.539 2324.6347 2324.6347 327197112 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 16690.952 51246894 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotalea psychrophila LSv54 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfotalea;species:Desulfotalea psychrophila; 6277.1527 8378.2506 7477.3417 4913.983 6632.5748 4622.6456 5379.9873 269834651 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 11090.0568 117959724 xylanase Carbon Cycling Carbon degradation Hemicellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 6869.5207 8192.1879 4654.3303 109899702 arsc Metal Homeostasis Arsenic Detoxification Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 101422.7026 239981946 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces albus J1074 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces albus; 4966.9994 5683.6392 3482.4941 3482.4941 3369.6351 5392.071 21534.7615 4105.0552 2439.693 2775.1427 6359.2783 7716.5039 86573765 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 4952.1133 23033.6858 3916.7008 3916.7008 8467.7474 291540922 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia intestinalis XB6B4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia intestinalis; 5272.614 3548.7635 294884129 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA63_4W superkingdom:Bacteria; 4259.5267 5506.0338 6911.3669 6328.3555 8997.3502 88779006 xylanase Carbon Cycling Carbon degradation Hemicellulose Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 23308.0016 4515.9427 296181207 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 3563.4779 5173.4715 4496.1128 2353.4007 4321.9517 1964.2374 145220400 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 28915.3778 210156783 ppx Phosphorus Polyphosphate degradation NA Collinsella intestinalis DSM 13280 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella intestinalis; 22069.0887 9328.2061 6054.996 6054.996 6903.562 80105.0316 3722.7665 148628310 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4434.7149 4729.0019 4870.7589 8189.208 5771.1853 7274.3583 5059.8653 4964.55 284008463 ppx Phosphorus Polyphosphate degradation NA Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 3579.3414 145965193 endochitinase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8871.3578 110841.3311 139478447 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 12802.1853 4729.7842 45594.2777 3967.0506 2164.7922 1713.7854 2115.3816 73992788 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Chondrostereum purpureum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Chondrostereum; 7592.2894 10640818 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermoplasma acidophilum superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Thermoplasmataceae;genus:Thermoplasma; 14958.3677 3654.8694 158336416 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 5035.6223 325282324 gdh Nitrogen Ammonification NA Deinococcus proteolyticus MRP superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus proteolyticus; 5931.6462 6193.3369 7812.4068 34103750 arsc Metal Homeostasis Arsenic Detoxification Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 11545.5872 383781559 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 3288.264 4018.3878 94983133 silicon_transporter Metal Homeostasis Silicon Transport NA 3681.2277 3623.9405 3254.4038 389739310 nagg Organic Remediation Aromatics Aromatic carboxylic acid Stereum hirsutum FP-91666 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Russulales;family:Stereaceae;genus:Stereum;species:Stereum hirsutum; 3748.4885 3494.8468 20552.3691 2201.6376 282951440 nirb Nitrogen Assimilatory N reduction NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 7506.0287 74878.5324 5760.3977 14624.8559 14624.8559 4203.9974 4840.003 6932.1884 5901.666 3119.6921 5497.7118 4898.3215 5083.504 1895.5973 3154.5569 5504.8618 297242623 pula Carbon Cycling Carbon degradation Starch Gardnerella vaginalis AMD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 6549.8638 4446.9306 4561.8597 4077.3881 9563.0455 9563.0455 3482.7594 2401.7534 3885.5377 8367.6327 1567.1812 6291.1432 4240.2483 2159.1228 359462906 amyA Carbon Cycling Carbon degradation Starch Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 4965.865 7034.6487 4179.2103 7625.9888 6238.9461 319413995 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5139.668 3881.6726 11181.3735 2319.2642 5349.9284 7599.2172 7656.6126 8155.1574 3199.5474 20223.1002 374704970 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12905.1253 3645.6997 3299.0411 404435069 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 11786.0614 2801.1322 3933.4362 17576.7946 5406.0394 12318.5925 1783.1347 3353.2255 18232.4895 313149060 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 15396.4224 136946.3151 6915.8509 3973.4076 3973.4076 3488.8748 4069.4907 2343.2795 1935.1961 3662.655 1966.8913 63029742 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3948.5776 6466.7228 2780.8971 2780.8971 218221643 sqr Sulfur Sulfide Oxidation NA Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 11749.3756 320126031 linb Organic Remediation Pesticides related compound NA Geobacter sp. M18 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 4163.4541 64450.3961 3943.4067 163775988 Sir Sulfur sulfite reduction NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 3712.5136 5538.3638 3990.3298 2269.6326 182680297 mmox Carbon Cycling Methane Methane oxidation Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 23702.4825 1697.3554 157406287 nhh Organic Remediation Aromatics Nitoaromatics Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 4954.5166 163744167 phn Organic Remediation Herbicides related compound NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 4432.2759 3156.4275 3812.8676 5797.0515 3502.5918 2935.9415 2725.0198 9425.1232 5713.9035 1777.3966 2429.7094 62084128 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13399.1374 342527.063 12317.455 3147.6561 336325375 amyA Carbon Cycling Carbon degradation Starch Corynebacterium resistens DSM 45100 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium resistens; 7846.2405 5064.8745 357043863 amyA Carbon Cycling Carbon degradation Starch Prevotella histicola F0411 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella histicola; 3962.36 6067.332 366090289 amyA Carbon Cycling Carbon degradation Starch Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 5148.2097 94957822 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4548.5708 4105.5912 32473179 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 20718.1474 4100.6356 1647.2551 353184641 cda Carbon Cycling Carbon degradation Starch Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 43842.7091 4421.7573 4896.0299 4896.0299 13516853 fcbc Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FHP1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3669.6021 3578.8365 3578.8365 385811256 amyA Carbon Cycling Carbon degradation Starch Ignavibacterium album JCM 16511 superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 973926.5347 317034628 rgl Carbon Cycling Carbon degradation Pectin Aspergillus niger CBS 513.88 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 5429.1538 315471958 arsc Metal Homeostasis Arsenic Detoxification Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 5247.8274 11734.4904 407753292 nhh Organic Remediation Aromatics Nitoaromatics Serratia plymuthica A30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 3999.4742 343512267 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 7507.3975 5140.4747 5140.4747 5185.3672 1727.802 3200.8455 309367561 cysJ Sulfur Reduction NA Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 6717.3778 91800536 ppx Phosphorus Polyphosphate degradation NA Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 3648.4697 3737.9863 333897471 chitinase Carbon Cycling Carbon degradation Chitin Thermoanaerobacterium xylanolyticum LX-11 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium xylanolyticum; 4024.1022 70669.0465 4636.1734 8226.3298 2334.1924 212554982 nrfa Nitrogen Dissimilatory N reduction NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 9304.3056 74898.4581 3379.2008 8974.2712 5079.6333 4421.4943 4263.9038 5854.7504 7767.4956 4977.867 5772.5769 2179.5136 5238.0504 2570.4256 197296831 b_lactamase Virulence Antibiotic resistance Degradation uncultured bacterium BLR13 superkingdom:Bacteria; 7000.9738 3307.7892 1769.466 387591517 terc Metal Homeostasis Tellurium Detoxification Bacillus methanolicus MGA3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 4062.7336 3493.7974 3736.0036 2287.7542 4983.2614 2694.1639 3001.1298 3296.4154 294341600 gdh Nitrogen Ammonification NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 3995.8912 4000.0667 9104.462 13191.4628 4209.236 393172383 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2012 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5116.7784 3289.8307 2494.2074 2494.2074 5270.6708 12797.0397 7339.1987 5088.3301 20620.9313 9625.7517 5491.9819 4852.5014 9576.8139 169886295 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 14934.6879 88432.2129 2747.4715 3533.1539 6827.643 313894928 amyA Carbon Cycling Carbon degradation Starch Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 19443.9531 19192.7937 4007.9704 13699.0687 11025.8568 6571.4972 3788.1302 102597.5049 319443032 cysJ Sulfur Reduction NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 5758.3125 5817.9639 7443.8032 3664.8931 4226.3441 2186.3335 2344.2493 2228.2711 24105.9298 4518.5682 2365.657 6198.6555 366160205 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Escherichia sp. TW09308 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 4300.3546 5533.6668 11812.8488 387927430 amyA Carbon Cycling Carbon degradation Starch Bacillus methanolicus PB1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 7141.4729 5103.924 3057.3072 3057.3072 8493.7577 2413.5826 2064.3262 6096.7392 300864129 terc Metal Homeostasis Tellurium Detoxification Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 4671.2591 7050.852 5199.0467 4533.0448 73763116 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6631.9587 51597664 endochitinase Carbon Cycling Carbon degradation Chitin Yersinia pseudotuberculosis IP 32953 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pseudotuberculosis; 3810.6074 165907.0269 32578.0289 103714.1995 386141157 ppx Phosphorus Polyphosphate degradation NA Escherichia coli 1.2741 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 4044.6096 313155557 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 5301.9387 9025.9605 373551198 terc Metal Homeostasis Tellurium Detoxification Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 4119.9341 142617.2901 295680632 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6277.5141 60491352 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 3838.5161 3868.6744 6111.3453 302441138 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 52321.0807 13097.2875 78165828 dsra Sulfur sulfite reduction NA Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 3884.4222 4436.066 5002.4132 22580.2394 2331.1585 5886.6428 2691.6011 283785368 cmci Organic Remediation Aromatics Other aromatics Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 5773.0341 209964607 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 3726.6821 3287.6579 2295.3536 5715.1168 3997.3983 5285.3762 2260.9611 146299168 amyA Carbon Cycling Carbon degradation Starch Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 25031.9365 4200.6567 6121.9268 4646.8742 311103473 terc Metal Homeostasis Tellurium Detoxification Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 22809.4201 5535.9345 5535.9345 5015.9718 3527.6782 5538.1195 2879.8809 3200.4005 247538680 arsc Metal Homeostasis Arsenic Detoxification Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 57594.2938 2712.3112 4401.5881 7168.1267 14730.6895 46520009 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4348.5425 5985.96 284172979 tehb Metal Homeostasis Tellurium Detoxification Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 4011.483 6090.8808 302196832 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 4477.7934 219564316 endochitinase Carbon Cycling Carbon degradation Chitin Ralstonia sp. A-471 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 4234.3039 8522.4534 3005.0314 3005.0314 3301.3744 8169.5207 4633.1377 4115.6673 5969.7467 6266.2249 5811.969 9174.1266 4773.7254 6292.8532 1827.0644 7788.0521 5229.228 4191.1711 14282.7688 328810492 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 6096.7548 4881.3823 5772.4889 15077.9392 2201.5873 2201.5873 15852.4087 5609.0256 2780.7892 4367.6144 10331.1014 197296836 b_lactamase Virulence Antibiotic resistance Degradation uncultured bacterium BLR18 superkingdom:Bacteria; 8140.4585 356667018 xamo Organic Remediation Other Hydrocarbons NA Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5600.5077 7754.4238 6089.9072 352962352 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 5721.2379 82702.0813 2765.3015 37925851 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3716.7069 261345044 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 3880.3043 270159494 alkb Organic Remediation Other Hydrocarbons NA Legionella longbeachae D-4968 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 4851.7987 119449893 chnb Organic Remediation Other Hydrocarbons NA marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5300.7127 2810.0791 2810.0791 73540698 urec Nitrogen Ammonification NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 3705.9674 3153.5816 7182.3547 7182.3547 6722.1921 4934.633 6955.6943 3781.7923 2755.8161 2788.4307 3437.4963 4955.7491 373234011 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 4394.3147 5962.0455 238709013 amyA Carbon Cycling Carbon degradation Starch Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 10005.4496 6804.1978 4057.3895 2793.8993 2793.8993 382949311 amyA Carbon Cycling Carbon degradation Starch Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5956.3119 2674.4693 154322593 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 4491.0357 12432.5008 369844319 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 10039.0213 60005.2314 8538.7037 3525.8767 2666.1446 5183.3315 4379.0606 2754.7538 5217.2535 2093.5945 3289.5872 5019.7911 313682587 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfuricurvum kujiense DSM 16994 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfuricurvum;species:Sulfuricurvum kujiense; 4937.0261 2445.4145 3531.4501 5229.3796 6434.405 7813.3049 7813.3049 2858.3006 9909.9388 3642.8715 3156.6669 8613.8975 3925.1512 10764.1319 4313.6771 2039.5917 367040883 rgl Carbon Cycling Carbon degradation Pectin Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 7992.2039 64329.1917 7193.9226 3878.6833 2010.3205 2333.7731 3046913 catechol_b Organic Remediation Aromatics Other aromatics Geobacillus thermoleovorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 3722.5919 58531.4999 13512.7773 19047.3945 345869757 exaa(moxf) Organic Remediation Chlorinated solvents NA Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 3231.7846 304343088 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 21930.8554 259022391 PRI Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 3544.9082 55111.2084 2838.3394 5455.9801 314971644 chnb Organic Remediation Other Hydrocarbons NA Propionibacterium acnes HL037PA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 7035.2445 3795.4766 380449920 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 3857.9165 157285734 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7693.8418 4580.3717 148474792 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4343.2513 7010.4475 73762944 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6091.1072 3460.7044 164280.1299 4687.9245 7257.1932 4075.975 7209.7705 2506.0399 3227.7104 10329.0412 10667.2926 4784.8755 6108.9536 1927.744 3548.7986 3095.1825 6310.9033 292809528 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 148432.8014 347517145 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio sp. A2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5934.3362 311343442 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 3519.8704 8185.0662 4822.0219 4618.4569 2853.9583 4009.4613 270510505 terc Metal Homeostasis Tellurium Detoxification Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 14160.1279 259487973 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 3427.8493 372267129 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 5450.8584 4550.422 10624.2606 2597.0631 2983893 icd Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 6084.6407 3610.4155 4196.7192 7099.8834 3768.2844 4905.9526 2393.5455 2856.4231 5466.0033 75703627 FBPase Carbon Cycling Carbon fixation Calvin cycle Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 5034.917 148514533 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4206.7917 3194.4632 3521.847 5362.9289 2297.9091 1916.0419 4916.1809 2948.3239 3288.9408 2111.9419 166078307 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6579.61 3762.2286 7056.6367 8222.6777 52207940 badh Organic Remediation Aromatics Other aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5086.1282 3229.056 384145417 chitinase Carbon Cycling Carbon degradation Chitin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 23698.4863 2919.7799 4641.6441 2719.2861 207367224 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Venturia nashicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;family:Venturiaceae;genus:Venturia; 734200.9855 126629427 atzb Organic Remediation Herbicides related compound NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4423.8264 3385.1838 7303.7697 4226.7109 4226.7109 6606.1476 7006.6391 4015.7024 11497.6857 4958.65 6633.7917 2609.0086 6252.8017 5033.965 21811.8508 3908.7737 4169.9853 30230513 mcra Carbon Cycling Methane Methanogenesis Methanosarcina lacustris superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina; 5437.9732 116181638 ara Carbon Cycling Carbon degradation Hemicellulose Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 4809.5312 5666.9326 3883.4996 2179.3 2179.3 2563.0338 5975.9934 3560.8395 4230.3168 18559.0418 13482.7813 5139.4199 5029.9897 2149.3579 2995.4182 4761.8125 301321556 cutinase Carbon Cycling Carbon degradation Cutin Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 9185.5921 4539.734 3513.5807 5005.2519 9854.6657 2401.7039 3259.5611 134263.6602 6088.0036 154253721 FBPase Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 18097.8656 35090.9989 4756.2086 33385603 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5834.5055 15225.2078 3050.3962 3139.1742 5102.1943 7086.6971 3386.5099 2660.0072 7980.3773 3956.8731 2685.0886 2534.6207 2517.9407 167584351 exochitinase Carbon Cycling Carbon degradation Chitin Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 9868.4218 260170751 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4976.3561 7860.2649 407986393 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium hassiacum DSM 44199 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium hassiacum; 3433.5521 3384.0277 311070443 RgaE Carbon Cycling Carbon degradation Pectin Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 4852.6205 3727.5536 154490.0783 5000.634 1959.0751 1959.0751 4328.8652 6552.2893 7803.4031 109452429 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3832.4796 11325.3479 11325.3479 6014.1446 6471.735 2323.6529 9087.9531 5435.8842 3373.4632 315648287 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 10030.0967 3438.7663 2090.9309 2090.9309 197316286 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri MJ11 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5073.6679 3576.7947 6498.2254 116182880 badh Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 3409.6897 5896.7778 3793.512 5435.7612 1941.1183 2668.0035 363805684 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 21176.0184 1395139 tdnb Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3672.4154 3644.3702 11063.6535 7836.1815 218759919 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 4226.8579 10760.9405 5989.0927 5144.0118 2821.5265 6467.8302 4064.6254 151561407 phn Organic Remediation Herbicides related compound NA Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 3715.663 5423.1306 5558.0194 2099.6095 1823.2023 5617.8485 224024800 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 10250.1903 4366.0039 7615.7476 317170908 pcpe Organic Remediation Herbicides related compound NA Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 4075.6709 2359.8003 152968712 cueo Metal Homeostasis Copper Detoxification Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 30136.8283 6264.2066 6689.1884 5752.3243 2872.9567 22772.5638 506919.2719 159892386 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 3441.8458 3572.0838 24413912 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 4580.9021 4703.82 373525630 glucoamylase Carbon Cycling Carbon degradation Starch Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 5165.6687 4968.0215 4968.0215 2996.2784 6195.6373 2897.3949 3226.6316 158523494 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4651.1672 6074.909 4405.3014 21841.1891 6902.4571 4892.525 3790.7282 6639.0835 90954623 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4205.057 7911.7616 2595.0464 3584.4788 386426138 xyla Carbon Cycling Carbon degradation Hemicellulose Joostella marina DSM 19592 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Joostella;species:Joostella marina; 282811.1425 6685.8276 333809833 arsc Metal Homeostasis Arsenic Detoxification Methylomonas methanica MC09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomonas;species:Methylomonas methanica; 7617.4554 14115.1476 20745.7826 99083279 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4355.9118 81430.0582 10938.4961 3706.0325 4956.6595 5202.3728 5648.3815 10199.6139 4566.8869 6011.8179 2012.3365 2776.9052 3140.905 359457841 amyA Carbon Cycling Carbon degradation Starch Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 674514.4647 167461246 arsm Metal Homeostasis Arsenic Detoxification Paenibacillus larvae subsp. larvae BRL-230010 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus larvae; 3386.9321 326692560 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leuconostoc argentinum KCTC 3773 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 5130.6109 2216.0242 2216.0242 1883.5174 4450.0214 383824104 ppx Phosphorus Polyphosphate degradation NA Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 9853.6547 2452.5121 4567.058 4567.058 17767.1275 8118.2759 11298.6687 5333.9472 4365.2293 4349.2711 2787.9535 3091.8087 5533.0139 4304.2715 4002.8089 5057.4332 2016.8228 14669.3626 2212.9576 157285442 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4139.0226 344341045 aoxb Metal Homeostasis Arsenic Detoxification Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 4618.2757 34460.5508 26302.1876 26302.1876 23768.9244 3640.6224 4987.8884 2821.5954 2608.7844 2888.4069 3600.1068 332377276 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3761.368 65560.0967 3634.3428 168934.9794 3616.2377 2653.1193 4736.416 238711180 cueo Metal Homeostasis Copper Detoxification Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 21907.095 2901.9985 6819.4292 5708.6789 5447.9767 3499.684 3499.684 5249.0477 4835.624 145297564 amyA Carbon Cycling Carbon degradation Starch Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 17997.1674 3926.4681 2216.6149 2216.6149 2593.32 351000846 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 3666.587 3031.0626 5841.5252 5674.3592 5405.8717 350528226 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 356134.5576 329851585 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 5702.2885 5650.2078 4348.4665 4103.8695 2874.2354 87281183 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 88943.6596 3405.4441 393177255 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2012 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5815.3095 3964.5007 114320834 soxY Sulfur Sulfur Oxidation NA Alkalilimnicola ehrlichii MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 6359.5019 3313.7199 4118.4321 3575.2973 7624.3492 5580.361 3388.7822 5016.5175 5134.5582 4989.1591 6420.1296 2325.2202 5308.0301 2736.2878 328542636 exaa(moxf) Organic Remediation Chlorinated solvents NA Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 4052.3893 3858.6432 13760.8432 5783.9354 3083.4085 2511.5604 156565864 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Ignicoccus hospitalis KIN4/I superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignicoccus;species:Ignicoccus hospitalis; 6264.1293 10202.6779 5913.2572 2468.6441 4336.3141 11989.5021 46307872 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4265.2187 3290.091 7227.5717 2580.8394 5637.3835 3910.3372 2244.5027 3268.9432 3342.0166 347755993 glucoamylase Carbon Cycling Carbon degradation Starch Candidatus Chloracidobacterium thermophilum B superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Chloracidobacterium;species:Candidatus Chloracidobacterium thermophilum; 12504.1924 3171.5755 11066196 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Aeromonas hydrophila superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 4791.2987 69436.1346 3339.3512 3339.3512 2721.5763 6676.0659 6000.9848 3650.9549 4745.9395 2675.1868 2892.7707 313105056 dsra Sulfur sulfite reduction NA uncultured prokaryote 4271.4707 4415.8097 314929413 amyA Carbon Cycling Carbon degradation Starch Propionibacterium acnes HL044PA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 6240.4437 307141615 invertase_fungi Carbon Cycling Carbon degradation sucrose Schwanniomyces occidentalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Schwanniomyces; 104856.7106 294992299 endochitinase Carbon Cycling Carbon degradation Chitin Trichoderma croceum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9674.6725 5941.052 3852.7839 3852.7839 7067.558 260322.0841 4524.3227 4309.1887 5033.0471 5868.3717 2986.2869 4474.5224 4270.6148 85699467 Sir Sulfur sulfite reduction NA Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 4077.3833 40531.6705 353210128 arsm Metal Homeostasis Arsenic Detoxification Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 6216.3633 332879434 xylanase Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 4900.379 388457105 chitinase Carbon Cycling Carbon degradation Chitin Fluoribacter dumoffii Tex-KL superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Fluoribacter;species:Fluoribacter dumoffii; 32633.741 7825.1117 7784.909 7784.909 6861.1535 283779112 Sir Sulfur sulfite reduction NA Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 3870.7911 3770.2643 2258.9834 3641.9678 239807346 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. WCH70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 9776.6182 7443.34 14496.0778 3438.4802 351729245 endoglucanase Carbon Cycling Carbon degradation Cellulose Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 10022.2298 4978.8997 6646.3146 10889.0875 3687.3011 3687.3011 3128.0366 15232.3019 3510.6937 16969.3499 2474.7751 4421.5606 373952442 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 3278.8602 5395.8368 177839368 ara Carbon Cycling Carbon degradation Hemicellulose Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 6285.6435 14380.2057 3755.5674 3755.5674 2189.3786 4454.7542 262368309 bend Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 25647.5543 162036.8862 29699.5949 29699.5949 5341.2035 6904.418 3306.2747 3236.1408 4765.8601 2954.671 5306.3803 392965575 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 4221.9553 4298.9594 4298.9594 4677.8318 4299.7216 17108.3034 119458505 tfda Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4976.8932 377556606 ppx Phosphorus Polyphosphate degradation NA Lactobacillus gastricus PS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 186248.8263 83755999 mer Metal Homeostasis Mercury Detoxification Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 3683.5857 4607.5884 157285648 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5492.07 3087.248 13482.816 3426.6328 3426.6328 3651.9566 3778.7278 6036.5052 7342.8611 4000.1498 2985.6307 3708.7233 2134.9007 74419659 Sir Sulfur sulfite reduction NA Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 5218.6667 8233.8657 8233.8657 5707.3134 4156.2824 294643529 amyA Carbon Cycling Carbon degradation Starch Bacteroides ovatus SD CC 2a superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides xylanisolvens; 5666.0813 3233.1311 3305.3129 3305.3129 10004.0605 4776.2282 6000.7226 1858.8834 6525.052 4503.9436 18034311 dsrB Sulfur sulfite reduction NA Desulfohalobium retbaense superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfohalobium; 61264.5035 87696.7784 8995.7599 7218.2575 9681.9255 4380.7693 8556.7318 2686.4785 5872.1656 3962.1747 5369.7804 3131.2415 389666526 nitrilase Organic Remediation Aromatics Other aromatics Nitratireductor aquibiodomus RA22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor aquibiodomus; 37374.293 15857.126 7509.6803 296426173 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4577.8726 2849.5859 16260.12 8218.3001 45386209 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 4508.3875 4890.6479 2613.2566 8921.9122 3327.6541 5030.4114 118437425 TIM Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 3463.9694 3996.7548 3996.7548 3916.6353 5281.1878 7387.2631 2196.4859 2953.1117 89953222 chitinase Carbon Cycling Carbon degradation Chitin Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 5910.3134 3543.1856 5960.3641 9809.6418 3545.4366 3545.4366 2523.7833 5203.363 317018202 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5463.8041 60346.1696 12972.3193 4700.7883 4230.9946 4433.4346 5634.7854 5192.6865 4872.8369 2289.9002 25176.3371 292815963 chnd Organic Remediation Other Hydrocarbons NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 13398.5318 4842.2458 124258775 vana Carbon Cycling Carbon degradation Vanillin/Lignin Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 7466.7699 63858.5061 290472015 one_ring_23diox Organic Remediation Aromatics Other aromatics Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 4320.2898 5531.3294 3503.197 3503.197 3805.7007 6125.6785 2832.4641 106243.2063 2780.6342 19077.3373 4315.3233 2670.7356 3517.5904 374082589 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 9029.3658 3566.3301 24673.6306 8031.2593 6849.227 31002.7234 4627.3713 6697.4578 3582.9114 8320.5583 8683.5278 7295.172 14670.7937 6880.9486 373100032 pcpe Organic Remediation Herbicides related compound NA Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 4619.7645 225575292 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 4189.7923 55924.6535 9619.5599 4194.7427 3365.3375 12404.0517 6521.1278 8394.1293 6573.2879 2420.5209 2812.9741 6512.4534 12620331 amoa Nitrogen Nitrification NA Nitrosomonas cryotolerans ATCC 49181 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas cryotolerans; 4605.3627 6216.4827 4902.9383 5150.3565 1925.4328 5253.2001 212686107 cysJ Sulfur Reduction NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 27997.2454 1831.6085 374562894 amyA Carbon Cycling Carbon degradation Starch Dolosigranulum pigrum ATCC 51524 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Dolosigranulum;species:Dolosigranulum pigrum; 21100.343 385888917 dsrB Sulfur sulfite reduction NA uncultured prokaryote 16702.8277 25543.8684 70930911 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9119.922 2386.2299 5473.8541 8815.335 5664.6872 4662.4906 2053.6424 20591.5564 13467.5296 11383.0015 111460.5349 374598011 tehb Metal Homeostasis Tellurium Detoxification Myroides odoratus DSM 2801 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Myroides;species:Myroides odoratus; 4852.7065 4791.3886 5390.5707 9073.9164 6968.1269 1730.9463 2703.0435 2917.0551 383297744 catechol_b Organic Remediation Aromatics Other aromatics Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 3443.2618 7102.3995 153012124 tktA Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 14082.9847 13653.6418 3570.4268 7045.5428 4659.8381 4636.2546 8207.3537 79804.2227 298263684 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 7362.0219 193214783 dehh109 Organic Remediation Chlorinated solvents NA Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 3535.1796 270288706 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium josui superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4428.8767 2465.5529 3595.057 4033.8829 6892.1941 5460.3522 1767.4429 3544.4074 3048.2209 5234.8864 170721789 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 11161.0508 4839.4236 62623.762 2955.9021 2955.9021 3645.3015 32472.9073 2611.7651 6146.3765 10497.0883 4387.8481 3527.2005 367038115 ara Carbon Cycling Carbon degradation Hemicellulose Thielavia terrestris NRRL 8126 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia;species:Thielavia terrestris; 9069.1545 68529.2667 6292.5197 309775927 phn Organic Remediation Herbicides related compound NA Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 23263.6743 9462.7801 165880015 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5428.9051 3884.5827 6215.4534 9858833 gdh Nitrogen Ammonification NA Neurospora intermedia superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 146050.7505 211586052 chnb Organic Remediation Other Hydrocarbons NA Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 6845.1607 3547.2769 157285662 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4403.2941 4162.2017 4368.3097 7160.9647 5452.7233 95025959 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 3585.0255 3979.2015 5541.3505 324321490 nbac Organic Remediation Aromatics Nitoaromatics Cellulophaga lytica DSM 7489 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga lytica; 3472.1106 28070.8693 8010.3205 353674115 ara Carbon Cycling Carbon degradation Hemicellulose Brenneria sp. EniD312 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Brenneria; 3821.982 271964823 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 3415.8892 330962450 cysJ Sulfur Reduction NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 24628.7156 2299.4236 2299.4236 3229.0051 47613.303 299754143 cellobiase Carbon Cycling Carbon degradation Cellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3492.9718 3718.6375 5900.2114 5202.096 325677556 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 57276.748 5200.1406 2304.4265 2743.9976 3797.0596 111919184 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2921.843 375161089 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 4230.1265 4697.8328 182382469 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 94282.6673 6144.8241 6144.8241 5047.1098 3969.1675 2036.2825 7875.1626 2410.0468 4555.332 4832.2824 22199.9869 260838460 arylest Organic Remediation Aromatics Other aromatics Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2667.0638 393703333 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 7835.8996 5654.6625 20172.3057 183981632 cueo Metal Homeostasis Copper Detoxification Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 3366.5757 21647.1872 171782.1091 3999.4874 192764406 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2905.8554 4643.4783 371786306 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2927.4888 544621.1851 4488.4245 4488.4245 6962.4466 3363.8299 5260.6622 4570.3269 2637.8305 11287.6572 5870.1935 3561.8444 2686.8891 4423.0238 5583.8241 254970805 soxY Sulfur Sulfur Oxidation NA Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 9862.755 56677128 phn Organic Remediation Herbicides related compound NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 2374.6888 4145.1912 2476.211 381399991 chne Organic Remediation Other Hydrocarbons NA Microbacterium laevaniformans OR221 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium;species:Microbacterium laevaniformans; 5723.1029 3955.22 16235.3567 8261.8306 5675.2923 7471.4367 2196.4249 2564.8021 297582164 tehb Metal Homeostasis Tellurium Detoxification Vibrio cholerae RC385 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 104778.8258 375262744 catb Organic Remediation Aromatics BTEX and related aromatics Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 14610.5616 208970559 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3478.0616 77862464 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2905.4992 79343.4216 2551.5651 2551.5651 2965.1438 78172156 fccab Sulfur Sulfide Oxidation NA Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 11007.2961 37681713 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Lepidodinium chlorophorum superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Gymnodiniaceae;genus:Lepidodinium; 2794.6623 4913.9546 40744792 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 20504.2037 206686771 alkb Organic Remediation Other Hydrocarbons NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 2415.0587 2210.7206 8978.7558 5049.4871 2121.41 3159.285 148474762 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4646.1692 359791121 catechol_b Organic Remediation Aromatics Other aromatics Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 8328.4031 3836.544 197713857 ppx Phosphorus Polyphosphate degradation NA Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 3047.6244 2652.7209 2652.7209 2304.4702 219946679 pcag Organic Remediation Aromatics Other aromatics Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 2669.7848 3268.9529 1965.5128 23611.7735 374586909 terc Metal Homeostasis Tellurium Detoxification Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 85030.6365 5470.2279 72549722 GAPDH_Euglenozoa Other Phylogenetic NA Leishmania major strain Friedlin superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Leishmania;species:Leishmania major; 9980.8213 4298.7918 2204.1691 294884117 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxheteroA34_4W superkingdom:Bacteria; 4969.111 257633728 ligninase Carbon Cycling Carbon degradation Lignin Dichomitus squalens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus; 2977.9972 2583.0389 7140.0548 226309880 endochitinase Carbon Cycling Carbon degradation Chitin Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 125882.1777 103484169 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 10031.8227 6917.698 3914.8771 256039436 chitinase Carbon Cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 8182.5206 52207945 nagg Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3391.8072 6525.7379 2676.7983 149277365 chitinase Carbon Cycling Carbon degradation Chitin Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 13938.4864 371776265 amyA Carbon Cycling Carbon degradation Starch Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 2220.7849 2420.8967 8252.1052 3566.5493 1969.7828 4898.0927 161385285 B_lactamase_A Virulence Antibiotic resistance Degradation Phaeobacter gallaeciensis 2.10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 8905.6145 2890.5577 3046.3725 358028327 gdh Nitrogen Ammonification NA Pseudoalteromonas sp. BSi20311 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 2702.7996 95025961 pec_Cdeg Carbon Cycling Carbon degradation Pectin Emericella nidulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella; 3651.7325 4147.733 5623.0056 5909.3483 2017.3238 6378.57 238577851 xylanase Carbon Cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 2230.2441 177841043 amyA Carbon Cycling Carbon degradation Starch Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 2827.2728 11664.7986 10174.9504 333759959 amyA Carbon Cycling Carbon degradation Starch Oribacterium sp. oral taxon 108 str. F0425 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Oribacterium;species:Oribacterium sp. oral taxon 108; 4172.8833 99082987 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2397.0299 82170.4556 6301.279 2863.9193 2863.9193 2582.8379 3869.6375 4556.1691 7834.4656 4751.6324 4940.1742 57641765 amyA Carbon Cycling Carbon degradation Starch Thermococcus kodakarensis KOD1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus kodakarensis; 2800.7555 5128.4909 2056.8566 2395.5688 6009.5936 288943678 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalivibrio sp. K90mix superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio; 8597.6588 217900.8653 126035157 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 44059.1164 3631.0858 21619.5459 7369.6991 7369.6991 377567460 mer Metal Homeostasis Mercury Detoxification Gordonia terrae NBRC 100016 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia terrae; 2625.9762 3449.859 1833.148 62131464 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 190815.7497 357598834 terc Metal Homeostasis Tellurium Detoxification Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 6661.6441 2334.9607 15026272 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 49953.831 374391578 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus dendritiformis C454 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus dendritiformis; 2906.779 18628.6053 3340.9895 6635.9781 17966.8086 2876.648 149936153 atza Organic Remediation Herbicides related compound NA Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 2426.2245 2285.0158 303293248 dmdA Sulfur DMSP degradation NA Ahrensia sp. R2A130 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ahrensia; 2599.1289 302877274 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Gallionella capsiferriformans ES-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Gallionella;species:Gallionella capsiferriformans; 2813.8252 10202.406 322396279 nifh Nitrogen Nitrogen fixation NA Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 3810.4167 11962.9939 8319.4026 359779301 cellobiase Carbon Cycling Carbon degradation Cellulose Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 14791.939 3987.2799 3987.2799 17869.0491 2755.9683 5042.8068 4271.3472 3572.2002 315653162 amyx Carbon Cycling Carbon degradation Starch Lactobacillus iners ATCC 55195 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 3635.0155 3657.0478 6034.1246 5390.1405 109898541 trzn Organic Remediation Herbicides related compound NA Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 2770.5712 5669.7004 6076.4605 260938504 chitinase Carbon Cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 2588.7137 21071.552 73749196 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 8292.221 70930919 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 77846.2595 23003.949 8407.4374 2300.2281 3553.9034 119768471 cysJ Sulfur Reduction NA Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 18819.3588 17691.0007 158523836 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2693.1783 5117.021 3788.6348 6536.9558 4696.9772 3743.3951 2184.3908 10365.7378 6176.0421 1712.0903 3630.6242 222147231 phn Organic Remediation Herbicides related compound NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 4339.3101 44523.5518 3569.1346 2092.2002 8215.3904 371587160 trze Organic Remediation Herbicides related compound NA Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 9228.4399 5642.8983 2432.8843 2432.8843 153009381 TIM Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 4382.8851 4158.866 2005.6807 2998.5944 29342010 amyA Carbon Cycling Carbon degradation Starch Bacteroides thetaiotaomicron VPI-5482 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides thetaiotaomicron; 4501.7978 95018.9997 6689.244 4471.4647 327197126 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 4971.9796 16611863 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrosospira sp. AF superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 5990.704 4134.5829 288473.9918 329303643 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces griseoaurantiacus M045 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoaurantiacus; 9668.8613 12067.2515 2038.1008 118749394 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 16733.512 385719694 hzo Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 3479.5897 3425.7721 302670142 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 48883.4943 9668.1635 6672.7664 11056.1733 226424962 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 2598.6005 7127.6326 11176.57 6726.8056 377832426 terc Metal Homeostasis Tellurium Detoxification Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 24737.1496 14850.9669 21757.1771 7059.1802 146450603 phospholipase_B_fungi virulence degradation NA Lodderomyces elongisporus NRRL YB-4239 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Lodderomyces;species:Lodderomyces elongisporus; 2612.1109 149926930 SoxA Sulfur Sulfur Oxidation NA Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 4805.784 6674.0651 46121433 protease_serine_fungi Carbon Cycling Carbon degradation protein Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 3682.1967 110026.5068 3423.7543 4622.1837 5749.5046 2331.9433 5212.6653 1956.3498 2530.8324 3183.4546 18006.1265 371771810 pme Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 2364.8777 3463.3145 10415.8293 5153.5221 359275686 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. PCC-N superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 3727.5229 14209.4395 385258398 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2218.6435 4950.435 10371.307 295431790 aoxb Metal Homeostasis Arsenic Detoxification Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 63698.7901 46307833 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3014.14 8949.3675 2946.1995 11467499 mg_chelatase Secondary metabolism Pigments Chlorophyll Odontella sinensis superkingdom:Eukaryota;phylum:Bacillariophyta;class:Mediophyceae;order:Eupodiscales;family:Eupodiscaceae;genus:Odontella; 24292.1217 13298.1034 1568355 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 15113.4203 14365.6804 85374222 alkk Organic Remediation Others NA Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 32569.9049 329768048 tehb Metal Homeostasis Tellurium Detoxification Gemella haemolysans M341 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Gemella;species:Gemella haemolysans; 18319.0857 261210839 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2639.6148 3154.779 261879074 rgl Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 10632.1656 10597.245 339450231 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Leuconostoc lactis KCTC 3528 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc lactis; 4662.6122 5007.2524 291579992 cysI Sulfur Other NA Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 4698.6799 2357.6599 2357.6599 13557.1171 13612.367 2170.3924 5292.1184 2306.4125 7824.3748 302671087 ppk Phosphorus Polyphosphate synthesis NA Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 118514.6203 2270.1263 13177.3871 295843.4567 119462066 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 2825.2673 289175927 cysJ Sulfur Reduction NA Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 14246.336 12784.0674 248792.639 377526508 amyA Carbon Cycling Carbon degradation Starch Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 8040.9729 4003.9926 2853.2664 7646.6913 2593.8458 3575.99 306529970 cellobiase Carbon Cycling Carbon degradation Cellulose Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 4123.3122 15077483 dsra Sulfur sulfite reduction NA Desulfomonile tiedjei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile; 2758.4661 84780.473 3878.7195 2103.4141 363581623 beta_agarase Carbon Cycling Carbon degradation Agar Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 27468.4026 2538.5951 219994847 APS_AprB Sulfur adenylylsulfate reductase NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 4655.6931 3192.6386 3604.6013 991649.7492 2084.8337 2011.9624 13876.3104 148653392 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 20903.3567 12578.7731 3068.2212 3068.2212 11669.4986 5762.9375 2603.9553 2073.6896 3255.4478 33730.4897 319414976 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 9620.0778 9219.8214 4932.5928 2980.654 85723038 amyA Carbon Cycling Carbon degradation Starch Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 2355.2223 94314033 gdh Nitrogen Ammonification NA Cupriavidus metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 55474.3026 59822.5514 257867277 xyla Carbon Cycling Carbon degradation Hemicellulose Enterococcus casseliflavus EC30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 7723.0713 183981517 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 49429.2829 3437.5439 3437.5439 118926.8927 4716.057 2409.1055 5190.4251 4985.5036 254043706 tktA Carbon Cycling Carbon fixation Calvin cycle Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 9799.9802 83643752 endochitinase Carbon Cycling Carbon degradation Chitin Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 44258.0795 13462.4389 2838.5834 7032.9956 265773.1681 358047398 cellobiase Carbon Cycling Carbon degradation Cellulose Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4080.8586 211565152 ligninase Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 4975.967 4658.8873 328956147 ara Carbon Cycling Carbon degradation Hemicellulose Coriobacterium glomerans PW2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Coriobacterium;species:Coriobacterium glomerans; 4656.9388 4696.2231 241867668 ppk Phosphorus Polyphosphate synthesis NA Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 2854.0504 37954354 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2930.9003 3981.5754 388063303 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 00703Dmash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 2865.1703 110281703 cysI Sulfur Other NA Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 4363.1197 2221.2487 2221.2487 5860.8493 4013.2803 1918.0258 4241.6558 2307.5354 381361630 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3503.9254 2348.6985 5712.1909 150388108 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Alkaliphilus metalliredigens QYMF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus metalliredigens; 4483.4812 359686433 b_lactamase Virulence Antibiotic resistance Degradation Leptospira santarosai str. 2000030832 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 3564.6209 4369.0147 223714342 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2473.9166 22473.8763 7946.1247 24152.595 3349.0198 5120.0803 170690770 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 22833.8247 392516361 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WU95 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3030.7898 4085.493 3161.0056 3161.0056 2388.853 3974.6591 5744.1823 291549028 amyA Carbon Cycling Carbon degradation Starch Ruminococcus torques L2-14 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 3239.2602 270512542 amyA Carbon Cycling Carbon degradation Starch Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 2812.3941 2982.8092 2982.8092 3566.0144 4564.5101 1865.5454 381196178 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii WJ10621 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 14184.7262 288897820 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 4710.4981 5474.0625 48166.6361 12443.5965 5384.1805 4774.7527 335878256 ppx Phosphorus Polyphosphate degradation NA Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 9000.351 316981138 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 7839.2762 296852243 SoxA Sulfur Sulfur Oxidation NA Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 2900.305 6361.9925 7581.0802 4657.5376 4581.0739 2247.6125 3430.4875 6715.9848 78100384 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 116187.0249 2842.7781 2842.7781 5536.6819 795452.043 353190525 linb Organic Remediation Pesticides related compound NA Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 7565.1299 2808.5007 3836.7443 9381.1586 374632528 ben_bcla virulence NA NA Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 7218.379 4492.1946 2947089 metc Metal Homeostasis Mercury Detoxification Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3187.2287 46115002 lactase_fungi Carbon Cycling Carbon degradation Lactose Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 3697.2282 283627.5297 114551130 sqr Sulfur Sulfide Oxidation NA Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 12486.4951 4428.9498 4428.9498 8546.3658 4829.4646 3510.2573 67856894 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 6666.505 2668.059 4811.9281 4256.7268 3041.1763 262093032 cellobiase Carbon Cycling Carbon degradation Cellulose Exiguobacterium sp. A011 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 2198.3512 6825.7908 7338.3418 5688.1982 6038.7335 2350.5147 3116.5239 1650.8232 2700.6589 333393111 pula Carbon Cycling Carbon degradation Starch Gardnerella vaginalis HMP9231 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 5164.3628 56380.233 7690.3151 291197084 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 16810.8426 379705196 amyA Carbon Cycling Carbon degradation Starch Streptococcus infantarius subsp. infantarius CJ18 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantarius; 3925.7726 8098.136 4579.9908 4316.7732 1680.5959 359341895 narg Nitrogen Denitrification NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6576.7902 373849932 ara Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 2898.1924 11771.4604 11771.4604 119537028 bend Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 7202.3624 76058255 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3152.4289 6233.4389 3974.5919 120553185 merb Metal Homeostasis Mercury Detoxification Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 8022.2401 2848.6645 18650.07 4387.9555 328921710 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7440.8481 218734.2347 5753.1043 5108.3982 2066.6586 6689357 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermoascus aurantiacus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Thermoascus; 6256.6458 4078.2893 4078.2893 5643.4297 77387838 mmox Carbon Cycling Methane Methane oxidation Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 4677.4783 83647632 arylest Organic Remediation Aromatics Other aromatics Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 4330.4313 3698.9722 299746168 ppx Phosphorus Polyphosphate degradation NA Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3168.543 7441.8089 2766.9523 16499.4038 1981.1782 300390398 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2298.3355 7080.7566 70930943 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 22178.9708 33030.7083 2833.0289 158969747 protease_serine_fungi Carbon Cycling Carbon degradation protein Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 3042.1703 192764220 nifh Nitrogen Nitrogen fixation NA uncultured prokaryote 3218.6343 6147.0801 5386.1822 5454.0826 11008.8075 10559.568 13696.2448 5770.0768 4468.0999 5214.9082 16265.3505 345881645 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 10087.8807 3398.8799 7699.7274 7862.8428 4594.2156 261891172 chitinase Carbon Cycling Carbon degradation Chitin Vibrio mimicus MB-451 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 56987.3387 2713.4034 2540.027 7619.5842 6626.5911 359765018 catechol Organic Remediation Aromatics Other aromatics Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 32291.1463 361057677 chnc Organic Remediation Other Hydrocarbons NA Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 5253.0101 299076012 nitrilase Organic Remediation Aromatics Other aromatics Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 2927.3686 260608489 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 2998.3486 162568519 aoxb Metal Homeostasis Arsenic Detoxification Acinetobacter sp. 33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3689.4875 6908.6225 2689.0319 49612561 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pectobacterium atrosepticum SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 3874.3496 13547.3399 6774.9921 379988851 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3277.4633 67852.9864 4290.2777 37726837 dsra Sulfur sulfite reduction NA uncultured prokaryote 2432.4502 9577.6068 372266331 phytase Phosphorus Phytic acid hydrolysis NA Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 4980.7529 8998.0999 3654.1522 3654.1522 365838625 amyA Carbon Cycling Carbon degradation Starch Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 9225.261 3092.6777 2649.5884 86138871 ppx Phosphorus Polyphosphate degradation NA Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3665.9478 210154921 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium hiranonis DSM 13275 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;species:[Clostridium] hiranonis; 6104.2734 164455264 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4197.355 18153.7314 15147.1601 10018.7985 4230.9206 4205.2204 8063.4534 225194098 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3639.7832 6596.8352 2489.9323 5911738 xamo Organic Remediation Other Hydrocarbons NA Rhodococcus sp. AD45 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3519.1305 222440675 urec Nitrogen Ammonification NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 3060.8283 75763.8172 206678713 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3346.0146 212528330 p450aro Organic Remediation Aromatics polycyclic aromatics Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 13404.7776 10022.2998 585326.4731 3939.0256 78696302 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 33002.0475 11446.5123 4253.4278 83852318 pgk Carbon Cycling Carbon fixation Calvin cycle Oceanicaulis sp. HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 2751.8482 13988.7284 133986.9255 4885.0539 160917434 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12807.3628 209486774 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7114.5652 438044.3642 326906725 amyA Carbon Cycling Carbon degradation Starch Streptococcus parauberis NCFD 2020 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parauberis; 36495.4779 365850942 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 9178.0727 59682.0729 4460.843 5049.9948 2827.5095 258450273 urec Nitrogen Ammonification NA Staphylococcus aureus A6224 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 9921.1773 315179428 arsc Metal Homeostasis Arsenic Detoxification Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 2388.7762 258510275 chitinase Carbon Cycling Carbon degradation Chitin Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 10359.4588 5291.9588 378575058 chitinase Carbon Cycling Carbon degradation Chitin Saprospira grandis str. Lewin superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Saprospira;species:Saprospira grandis; 2620.7889 332372426 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3554.1722 3713.9686 4665.3177 5065.4989 3702.3861 26541559 vgb Virulence Antibiotic resistance Degradation Streptomyces atroolivaceus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 6215.2616 3904.4751 4919.348 7247.6132 240277525 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus H143 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 4557.4054 81141.1498 3704.6215 3704.6215 5954.9499 2694.6423 6349.6996 383789544 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 14180.1217 3820.1229 2429.5768 4763.9721 4271.1066 15763.1597 1616.5834 2649.8601 5544.9127 153802321 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae MZO-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 3362.602 8498.293 8006.8685 2546.2609 4354.6472 383513888 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3696.308 7661.3712 2908.4617 345285241 amyA Carbon Cycling Carbon degradation Starch Lactobacillus ruminis ATCC 27782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 4128.5299 285026939 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 3573.4438 6416.2381 12975.5253 350559642 fccab Sulfur Sulfide Oxidation NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 16636.6626 8636.4879 7883.2335 2196.2355 3216.4567 119948332 amyA Carbon Cycling Carbon degradation Starch Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 3295.3057 63228.006 4970.7709 8236.8938 366087146 ppx Phosphorus Polyphosphate degradation NA Lactobacillus zeae KCTC 3804 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus zeae; 3109.1427 3479.057 238703518 cysJ Sulfur Reduction NA Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 6740.9864 3567.2418 4418.1209 10112.1563 2746.9882 124389557 rubisco Carbon Cycling Carbon fixation Calvin cycle Halorhodospira abdelmalekii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira; 3395.6111 9687.6966 3119.8769 15833.9146 342814266 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 3978.7049 2247.8638 296921877 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 2843.2714 32647.6688 395211350 linb Organic Remediation Pesticides related compound NA Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 57152.0726 88809574 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3370.4584 61659.4089 3957.5068 7018.3883 2223.2678 2223.2678 5007.6749 2184.4027 4226.1255 19032.2215 5766.8886 2454.4629 336004425 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 18006.325 397086611 badh Organic Remediation Aromatics Other aromatics Chondromyces apiculatus DSM 436 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Chondromyces;species:Chondromyces apiculatus; 3030.9454 20295.0555 3094.4537 3094.4537 171678381 pec_Cdeg Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 3607.1605 334120666 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Microcoleus vaginatus FGP-2 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Microcoleus;species:Microcoleus vaginatus; 3190.6272 677353.4953 182483.2501 3234.8215 5346.7673 7060.6762 6436.1333 2161.23 7150.849 10740.0259 58040689 ppx Phosphorus Polyphosphate degradation NA Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 2261.6659 6967.298 212539472 exoglucanase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 3088.7529 49138.2096 9385.9748 109290261 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2563.8048 8371.2292 43701.9957 5707.2783 3062.8594 377810853 amyA Carbon Cycling Carbon degradation Starch Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4540.0079 85083321 phenol_oxidase Carbon Cycling Carbon degradation Lignin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 3998.7454 167836545 bphd Organic Remediation Aromatics Polycyclic aromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 18008.9753 6250.2497 125620448 amyA Carbon Cycling Carbon degradation Starch Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 51241.5574 323531627 amie Organic Remediation Aromatics Other aromatics Desulfotomaculum nigrificans DSM 574 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum nigrificans; 6580.4143 332377326 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3582.5231 255718581 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 2727.163 8432.7018 4827.8609 3477.8276 4889.0793 4877.5908 122090150 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 5094.3967 9605.4957 6088.0686 5698.2092 3412.0549 3162.0407 149375484 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 77477.5757 3623.2166 3623.2166 13541.525 2346.1116 2233.6109 3148.9876 296128007 endoglucanase Carbon Cycling Carbon degradation Cellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 2641.7648 17149.1813 2666.2422 2666.2422 12813.0487 4220.2755 2989.6449 157679052 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7322.3001 520888 GAPDH_Euglenozoa Other Phylogenetic NA Trypanoplasma borreli superkingdom:Eukaryota;order:Kinetoplastida;family:Bodonidae;genus:Trypanoplasma; 2539.1832 6405.9636 6301.3191 4752.9246 2014.2203 2621.6496 5190.1018 393792765 amyA Carbon Cycling Carbon degradation Starch Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 3380.4332 6215.6703 4516.4975 115376797 xylg Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 9207.0183 18303.0278 10124.3728 5834.6946 2875.6533 12729.9485 268613530 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 5324.5177 293613346 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 10286.8653 4128.196 3830.183 2908.0143 258540870 amyA Carbon Cycling Carbon degradation Starch Lactobacillus rhamnosus Lc 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 9712.6216 35809.4421 4751.8243 9633.0691 68164638 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3218.3292 3743.2777 3991.4952 2963.5412 5193.7042 3637.4762 2868.6308 83310481 FBPase Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum magneticum AMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magneticum; 2881.4179 106594.618 4141.3157 7984.2043 7519.7157 2521.4522 110632256 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2510.7156 2379.2417 4351.3556 8739.8468 358050141 rgh Carbon Cycling Carbon degradation Pectin Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4863.5669 2199.8375 37359391 phenol_oxidase Carbon Cycling Carbon degradation Lignin Rigidoporus microporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Rigidoporus; 3312.2998 33408.438 257336920 FBPase Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 5094.2759 3448.7699 3533.6544 4688.9292 2487.0013 2976.1395 5787.0864 363423138 amyA Carbon Cycling Carbon degradation Starch Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 3159.2895 3384.2455 9544.2753 140713573 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 8648.0142 9344.753 189218233 cysJ Sulfur Reduction NA Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 2488.1702 31336.3315 221134980 arylest Organic Remediation Aromatics Other aromatics Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 6341.9386 372476488 RgaE Carbon Cycling Carbon degradation Pectin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 8614.6389 3651.749 211957241 soxY Sulfur Sulfur Oxidation NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 2548.7463 18527.2854 11002.2838 342349559 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2726.6194 5030.5728 89154648 tehb Metal Homeostasis Tellurium Detoxification Bacillus weihenstephanensis KBAB4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus weihenstephanensis; 63608.0767 372267222 alkb Organic Remediation Other Hydrocarbons NA Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 13040.547 397042.4082 3547.6223 398100412 nfsa_2 Organic Remediation Aromatics Nitoaromatics Pantoea sp. GM01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 105747.4898 614860.6232 2820.5351 90195244 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 6434.4927 148656521 sdhA Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 32546.8344 333788666 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 3063.2917 2983.5742 134133940 pcpe Organic Remediation Herbicides related compound NA Pseudomonas reinekei superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3323.8483 4345.5293 2805.3493 145223482 tehb Metal Homeostasis Tellurium Detoxification Mycobacterium gilvum PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 4024.8084 336234173 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermoglucosidasius C56-YS93 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoglucosidasius; 10615.6189 5155.8043 291613460 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 2929.2367 3567.6255 6088.0256 386383210 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 5695.6809 2588.1854 1971.857 343496959 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 5589.3507 197715713 ara Carbon Cycling Carbon degradation Hemicellulose Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 26684.0449 386402046 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2943.3656 10112.3958 10112.3958 3675.4639 6118533 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. SY5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 2504.1522 2993.6082 3325.7144 15972.2811 7880.1764 2209.9272 5369.9383 2628.6035 3134.9109 283475006 cmci Organic Remediation Aromatics Other aromatics Xanthomonas albilineans GPE PC73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas albilineans; 3499.8002 7103.4422 300113085 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrosococcus watsonii C-113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus watsonii; 3228.6901 3602.5141 3602.5141 50134.335 90336060 tktA Carbon Cycling Carbon fixation Calvin cycle Aurantimonas manganoxydans SI85-9A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Aurantimonadaceae;genus:Aurantimonas;species:Aurantimonas manganoxydans; 7195.737 2109.9434 60475988 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3066.4537 1321879.0675 2397.2201 2397.2201 2798.321 256586441 terc Metal Homeostasis Tellurium Detoxification Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 15671.1628 2612.449 2612.449 5424.6297 32895210 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 22466.0981 108936945 phenol_oxidase Carbon Cycling Carbon degradation Lignin Spongipellis sp. FERM P-18171 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Spongipellis; 12613.9276 343500111 chitinase Carbon Cycling Carbon degradation Chitin Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 6029.2099 6837.8787 3140.73 4790.7798 116494946 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 8782.708 2410.9887 2410.9887 7756.4392 398138443 xylj Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3638.5162 9671.8184 6085.7658 5558.5855 4770.0698 5211.3037 62131468 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4220.6298 296099 nitrate_reductase Nitrogen N Assimilation NA Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 7624.9911 6795.3996 2945.3963 3792.5375 2642.0508 375145160 pme Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 2821.3243 8136.6025 10166.3446 23480.3827 260223599 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4330.0973 12821.6024 28602.9476 227114480 pme Carbon Cycling Carbon degradation Pectin Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 3152.971 17956.1273 218130776 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides eggerthii DSM 20697 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides eggerthii; 12376.5755 219679101 arsc Metal Homeostasis Arsenic Detoxification gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2687.455 3681.5742 10669.0141 5401.8789 7753.1752 3335.8894 118720134 arsc Metal Homeostasis Arsenic Detoxification Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 3161.1173 146348854 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 5060.4844 4161.2334 5126.097 77174013 mer Metal Homeostasis Mercury Detoxification Streptococcus agalactiae H36B superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 3258.4716 5448.633 371492599 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri SR5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 2935.3898 22203366 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7214.0515 126135550 xylanase Carbon Cycling Carbon degradation Hemicellulose Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 2306.8533 227328208 endoglucanase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 4584.6016 2403.2154 2403.2154 3221.4453 219680050 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 8912.6288 3262.6652 3262.6652 2989.9257 30990.2978 3997.7425 3489.9518 4546.0197 8709.0472 157692017 terc Metal Homeostasis Tellurium Detoxification Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 44499.8798 335350707 amyA Carbon Cycling Carbon degradation Starch Lactobacillus salivarius GJ-24 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 7309.1063 126589874 alkk Organic Remediation Others NA Bacillus sp. B14905 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 328497.5233 4919.9769 311339184 cellobiase Carbon Cycling Carbon degradation Cellulose Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 4295.6665 223585844 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15601.2063 39450.8576 2989.6597 21756.2485 219676493 proO Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 12317.5437 345855581 poba Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 13080.3487 226245939 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 3645.1063 5993.8359 4708.8758 2849.7305 2646.0278 9462.9429 291338971 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces ghanaensis ATCC 14672 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ghanaensis; 5461.2689 63631.9643 5630.4496 2447.6971 4274.0325 3111.8202 22203365 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 6902.6693 302680332 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3068.583 298729453 cpna Organic Remediation Other Hydrocarbons NA Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 4515.8047 3423.4241 6165.3306 4177.0114 7580.9986 4324.2225 2380.7667 3049.225 4571.0669 6148.3597 2457.1718 3087.6434 18975.2608 4412.9654 336098135 nasa Nitrogen Assimilatory N reduction NA Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 6462.996 23393005 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4153.633 374372671 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 7459.1163 42494406 cmua Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 3170.3782 121607658 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 2583.8596 261055.2787 4163.9759 1809.6307 50982448 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2926.7706 7238.3827 5716.0911 4639.2403 17158.9197 2026.3433 17772.6263 56809467 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6567.3299 269306147 xylanase Carbon Cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 3926.1317 2172.393 225046613 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 7916.3759 106270.7781 3940.6287 4644.6185 7749.2394 5301.3332 10925.7146 5108.7954 4276.2317 4006.0042 116812205 nifh Nitrogen Nitrogen fixation NA Clostridium sp. MK31 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 3982.9898 65983.4707 4398.2672 1985.7244 1985.7244 7126.9896 6211.9525 321256344 Sir Sulfur sulfite reduction NA Cryptococcus gattii WM276 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus gattii; 2431.9165 4432.2478 3512.9252 300390339 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4579.5051 83312.8143 255279036 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 2211.1585 332682198 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 38689.1886 220936274 amie Organic Remediation Aromatics Other aromatics Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 10516.6715 3863.9746 20624.0742 4859.1648 4162.5592 301167157 ppx Phosphorus Polyphosphate degradation NA Bacteriovorax marinus SJ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bacteriovoracaceae;genus:Bacteriovorax;species:Bacteriovorax marinus; 4084.9973 7441.7999 17368.7952 1985.5543 1985.5543 6017.1837 3748.1598 28340.0596 68135545 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6338.3662 323365932 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 3567.2455 27218.2055 223691491 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 33378.2179 3487.6196 43619.4836 54404.6745 320107052 xylanase Carbon Cycling Carbon degradation Hemicellulose Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 60059.2039 5430.2017 3036.9196 10024.1627 4816.5748 205404.766 4358.1445 2141.1931 225571154 cda Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 15679.1038 5602.5711 3784.2869 3784.2869 3277.9286 6929.8124 5072.1836 2189.2669 4684.0531 3258.0306 5313.666 310829622 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 2988.8299 343394538 amyA Carbon Cycling Carbon degradation Starch Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus constellatus; 12111.143 270276296 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 2409.7063 120435511 alginase Carbon Cycling Carbon degradation Alginate Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 3711.0881 2473.0721 5595.3167 3708.7216 312220306 rgl Carbon Cycling Carbon degradation Pectin Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 2729.1431 170090057 glucoamylase Carbon Cycling Carbon degradation Starch Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 79613.5531 156104288 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2769.736 6770.0967 3313.3444 3313.3444 5194.0117 7153.702 5669.2335 111919180 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2835.4231 351688855 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Natronobacterium gregoryi SP2 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Natronobacterium;species:Natronobacterium gregoryi; 3175.2475 154495785 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 3826.6439 70883475 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma cruzi superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 25472.2674 291533384 amyA Carbon Cycling Carbon degradation Starch Megamonas hypermegale ART12/1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megamonas;species:Megamonas hypermegale; 7444.6577 158310020 nitro Organic Remediation Others NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;genus:Acaryochloris;species:Acaryochloris marina; 2500.1444 11891.8578 11891.8578 13751.2154 115401820 bph Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3453.9779 73534131 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 31691.4661 395652034 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 3222.5259 90975.9479 5555.7476 228471266 gdh Nitrogen Ammonification NA Porphyromonas uenonis 60-3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas uenonis; 3771.4528 77036.1431 376007234 narg Nitrogen Denitrification NA Arthrospira sp. PCC 8005 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira; 13288.6839 291544542 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ruminococcus sp. 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 15010.2783 5029.9703 7074.4289 4364.5262 2101.568 7861.6129 309315693 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 2844.6965 4604.2694 2779.061 2862.9825 24421257 nirs Nitrogen Denitrification NA uncultured organism 9427.8479 4772.0441 2804.6764 6398.5345 3929.7991 4202.7536 114771065 ppx Phosphorus Polyphosphate degradation NA alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 3341.1613 6269.7306 91778045 cellobiase Carbon Cycling Carbon degradation Cellulose Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 5743.5131 7624.3781 26921.9553 56780.5458 339763583 urec Nitrogen Ammonification NA Klebsiella pneumoniae KCTC 2242 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 5173.2571 146405645 amie Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3369.1114 4475.6878 4281.5489 6719.5455 3352.2025 149133248 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia calthae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 3064.4051 79867.6669 10357.2464 10933.1743 79210.0866 14732.3669 30839.5288 8509.9117 340028804 PRK Carbon Cycling Carbon fixation Calvin cycle Paracoccus sp. TRP superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 6407.6476 3214.2623 10593.8691 666867 pula Carbon Cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor; 2423.9857 4274.7895 348601497 amyA Carbon Cycling Carbon degradation Starch Tetragenococcus halophilus NBRC 12172 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Tetragenococcus;species:Tetragenococcus halophilus; 4914.9498 109290299 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3834.8135 4205.3842 9879.7493 299768244 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Chromera velia superkingdom:Eukaryota;phylum:Chromerida;genus:Chromera; 21791.3018 156743788 amyA Carbon Cycling Carbon degradation Starch Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 5316.0634 5135.7489 4258.3441 227438051 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2709.3426 6598.5772 5312.5863 388331419 nagg Organic Remediation Aromatics Aromatic carboxylic acid uncultured Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3062.36 6913.0766 7207.6238 7274.9965 157321230 exochitinase Carbon Cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 9019.1101 3370.0889 325962816 terc Metal Homeostasis Tellurium Detoxification Arthrobacter phenanthrenivorans Sphe3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter phenanthrenivorans; 2513.7403 3339.4616 3339.4616 83404776 nirs Nitrogen Denitrification NA uncultured organism 7044.9795 2551.07 42721544 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 4957.6476 3153.9996 422314105 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3506.456 4749.2336 6716.3719 3005.2609 43636.7379 55978121 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4975.9066 6301.3016 4271.197 8793.9188 7533.0149 115373925 linc Organic Remediation Pesticides related compound NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10057.5517 5342.9195 119491164 cellobiase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 2218.2674 28307.5485 6032.8874 6032.8874 3123.4986 11477.2982 5639.3036 2866.2494 2645.281 10071.4711 8793.424 6585.5776 6136.0414 3910.597 10289.0971 349782096 aps_apra Sulfur adenylylsulfate reductase NA Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 3515.5718 120593542 soxY Sulfur Sulfur Oxidation NA Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5063.9354 2797.2011 208970490 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 43800.091 377821294 ppx Phosphorus Polyphosphate degradation NA Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 7442.6829 357259084 terc Metal Homeostasis Tellurium Detoxification Staphylococcus simiae CCM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus simiae; 3489.6155 9379.8344 5095.1277 5023.0093 85669952 urec Nitrogen Ammonification NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 3544.4646 119392302 protease_serine_fungi Carbon Cycling Carbon degradation protein Monacrosporium coelobrochum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Monacrosporium; 2565.8602 3293.1471 4165.2408 2527.4599 4572.004 1567.6056 4079.7261 112464141 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 27817.2711 385885772 chitinase Carbon Cycling Carbon degradation Chitin Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 2220.2728 3754.9587 7022.2976 10163.657 6297.4562 327395861 xyla Carbon Cycling Carbon degradation Hemicellulose Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 2958.3742 133365.9226 4515.6302 6341.5663 7980.2468 3788.5719 4957.9836 3282.7022 160938706 atza Organic Remediation Herbicides related compound NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 7668.5936 6666.2053 10414.2279 4308.9119 9411.0217 169601064 cutinase Carbon Cycling Carbon degradation Cutin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 7277.0933 11523.4764 5554.1641 51291741 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5544.0437 2644.4694 2644.4694 7318.2743 2940.1978 2677.5678 15520.4664 11125.6381 7418.9934 4436.0693 2230.144 261381726 arsc Metal Homeostasis Arsenic Detoxification Bacillus sp. As3-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4708.9268 121594512 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 17356.3226 59905.6243 4453.8167 3477.183 5518.3731 1962.2041 2966.8723 71000713 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 9552.9464 7922.9642 3012.3717 6286.5922 6161.1284 12563.867 262310075 bphb Organic Remediation Aromatics Polycyclic aromatics Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 7726.7984 11660.2365 256732819 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 2789.6446 254431984 terc Metal Homeostasis Tellurium Detoxification Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 11197.0417 31683.0151 3483.4205 3483.4205 57072.1503 45272.0041 3495.7524 4847.2044 46354.4114 125870.6541 59479018 cysJ Sulfur Reduction NA Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 23682.7896 150864009 phospholipase_B_fungi virulence degradation NA Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 3839.6466 57184.1406 49819.4115 3357.0142 108777177 terc Metal Homeostasis Tellurium Detoxification Yersinia pestis Nepal516 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia pestis; 12711.2959 340535229 nirb Nitrogen Assimilatory N reduction NA Corynebacterium variabile DSM 44702 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium variabile; 45158.4577 343788078 pmoa Carbon Cycling Methane Methane oxidation NC10 bacterium enrichment culture clone 'inoc a Lieshout clone 5' superkingdom:Bacteria; 124351.9 159175973 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8071.4182 116043941 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2601.8175 6463.0633 334564828 urec Nitrogen Ammonification NA Corynebacterium bovis DSM 20582 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium bovis; 2286.3155 5941.1669 237499201 amyA Carbon Cycling Carbon degradation Starch Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 5434.9358 8336.8603 16230.43 13629.2608 8052.6616 14084.7711 329576143 arra Metal Homeostasis Arsenic Detoxification Parasutterella excrementihominis YIT 11859 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Parasutterella;species:Parasutterella excrementihominis; 3081.4696 3900.0478 3900.0478 7508.0517 6444.8491 7893.4383 3475.4091 4727.9178 126202188 mdld Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3616.6443 73720.4519 12499.3143 8211.7054 2806.4926 2796.6035 4172.5413 33551.8776 374386938 amyA Carbon Cycling Carbon degradation Starch Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 8863.7102 307770623 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 5598.048 41133.3182 2724.8208 9037.8289 1974.8438 145965194 endochitinase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 2834.4602 34944.4138 339638305 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus pentosus IG1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 22371.9263 147254.763 359736886 cpnc Organic Remediation Other Hydrocarbons NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 3129.3443 58297.0406 4534.7047 109290285 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6110.9496 10416.0888 5756.0918 9433.2875 3108.6696 281199220 nhh Organic Remediation Aromatics Nitoaromatics Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 4909.3506 16508080 linb Organic Remediation Pesticides related compound NA Mycobacterium smegmatis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 2873.9652 164456186 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 11570.5163 2522.193 4245.6498 9274.2634 212686984 cysJ Sulfur Reduction NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 2773.6468 13591.6581 4150.3187 126387774 catechol Organic Remediation Aromatics Other aromatics Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 6858.6909 322437536 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 45868.1786 4437.1119 9324.2621 154308508 cutinase Carbon Cycling Carbon degradation Cutin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 14974.6156 22372.2301 1109291.8773 51534841 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5251.2824 164455832 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3095.7457 6116.8555 3452.0945 7410.4711 13779.211 312215871 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 88700.6185 10260.3456 157320937 trze Organic Remediation Herbicides related compound NA Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 33552.366 98175.9418 5850.0174 5498.4064 8024.2904 4692.4969 8146.5675 3476.8981 4724.3648 2058.6601 3657.1855 6674.0539 2512.0295 8215.9854 284158778 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 4324.9493 80443.4553 381367818 cellobiase Carbon Cycling Carbon degradation Cellulose Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 2849.8392 3012.0209 254453322 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 10442.9283 39943524 tfth Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2607.034 119715081 catechol Organic Remediation Aromatics Other aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 3135.2275 9040.8004 13648.0799 56708985 hao Nitrogen Nitrification NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 3838.2406 3732.3233 4483.6123 4483.6123 5779.6449 4418.5974 3895.739 6798.7244 2747.0054 76579123 cysI Sulfur Other NA Burkholderia pseudomallei 1710b superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; 10143.7657 123559.4606 162452378 glucoamylase Carbon Cycling Carbon degradation Starch Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 3028.0691 6231.306 18181.9845 4188.5011 8193.8286 2734.8066 2440.1793 3475.254 6006.7331 392437339 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus KCA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 10070.8235 5719.3787 5156.8657 11916.777 213927096 arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 3464.901 3969.5413 3501.788 3501.788 1996.2063 2841.2244 292664554 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 5359.1315 2506.5493 5277.9659 3184.3598 51243029 exoglucanase Carbon Cycling Carbon degradation Cellulose Penicillium occitanis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 7479.8661 87123751 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3117.3395 85115.1768 6075.6959 3372.8586 6649.4158 10364.125 10096.035 9085.5205 9978.8669 10196.947 12796.8595 3672.1375 4511.9262 3291.4398 388610138 ppx Phosphorus Polyphosphate degradation NA Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3706.8584 83434.6163 19527.6531 5592.712 146280018 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 3575.9674 62120311 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 17822.793 20127128 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6551.5952 225155565 nosz Nitrogen Denitrification NA Diplosphaera colitermitum TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 7715.6277 2090.9417 2090.9417 7978.0941 4083.9562 5346.504 3058.5462 77761333 xylanase Carbon Cycling Carbon degradation Hemicellulose Xanthomonas campestris pv. campestris str. 8004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas campestris; 3260.1204 4476.8435 163811637 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 2506.0917 46201792 nosz Nitrogen Denitrification NA Magnetospirillum magnetotacticum MS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum magnetotacticum; 4824.1841 6913.1356 5235.4579 16583.5782 10471.849 10233.8519 6761.6875 228561681 aps_apra Sulfur adenylylsulfate reductase NA Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 6142.7338 27037.5521 386424695 nbac Organic Remediation Aromatics Nitoaromatics Joostella marina DSM 19592 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Joostella;species:Joostella marina; 2961.3843 4038.3712 4439.5595 4797.1544 77996979 dsra Sulfur sulfite reduction NA Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 2998.0322 6763.9322 4304.6377 3886.6773 3886.6773 4158.4802 9210.9 6072.9313 7669.3869 4871.7806 7207.838 3240.9498 4898.8107 14027866 linc Organic Remediation Pesticides related compound NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 15887.8568 55847381 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2498.2619 4793.8917 3277.6844 9519.8319 1817.0604 3241.1206 5847.0177 347954842 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes faecalis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 7741.0969 59305.5037 6834.291 2118.3611 4809.503 55540860 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5201.0911 15126.861 283843001 arsm Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris DX-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2333.1082 7542.7437 7542.7437 5095.9166 7316.826 238033821 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 4008.6834 376386823 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella oxytoca 10-5242 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 2934.2662 10180.8804 334888668 cda Carbon Cycling Carbon degradation Starch Haloplasma contractile SSD-17B superkingdom:Bacteria;order:Haloplasmatales;family:Haloplasmataceae;genus:Haloplasma;species:Haloplasma contractile; 34096.2637 2996.0867 298515491 alginase Carbon Cycling Carbon degradation Alginate Bacteroides sp. 3_1_23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3523.7666 4746.5331 109648132 dmsa Organic Remediation Others NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2359.2388 4584.3606 3700.0278 212710251 nitrilase Organic Remediation Aromatics Other aromatics Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 3515.7167 144906068 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7670.8943 35057.6515 4519.466 4519.466 9777.6903 338763858 ppx Phosphorus Polyphosphate degradation NA Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 2719.4818 60549.0113 4629.9966 4056.9599 3749.5891 3749.5891 8984.793 5899.1963 4278.8984 14118.946 2896.1742 5389.553 3476.555 9912.4383 5277.6355 2036.4777 3776.1241 3926.4712 4243.2477 302388172 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 3727.2057 3181.7198 9951.8325 299815977 terc Metal Homeostasis Tellurium Detoxification Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 7761.5086 393759324 nitrilase Organic Remediation Aromatics Other aromatics Alcaligenes faecalis subsp. faecalis NCIB 8687 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes;species:Alcaligenes faecalis; 3829.0375 3631.0792 4010.7657 4610.8068 4226.2651 82393825 nagg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. KB35B superkingdom:Bacteria;phylum:Proteobacteria; 32456.757 63029730 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4559.9706 2951.4566 2479.8897 5387.9993 112464027 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5992.0729 4352.4202 2925.1787 7965.043 4341.0072 5112.3491 4170.6493 2443.35 4027.8352 27353.5551 2127.7931 6134.1349 292560799 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2631.0011 4709.1986 5370.2539 2110.2807 2110.2807 10207.2195 5469.8091 4096.9921 8555.9938 2655.5386 3714.5032 116255355 cumb Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 2348.6943 3101.4065 9409.5564 2009.1844 80975793 alkb Organic Remediation Other Hydrocarbons NA Nocardia sp. H17-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia; 14156.0649 97217.0684 12538.0049 38925.8554 4108.4685 4108.4685 3696.8703 67518.8699 9366.2187 5767.7462 4358.5542 22628.2984 7572.5969 5202.1199 3210.2412 9034.939 19288.3051 67938737 ppx Phosphorus Polyphosphate degradation NA Chlorobium phaeobacteroides BS1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 3186.9885 3899.8791 2822269 hcab Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4775.522 393179412 amyA Carbon Cycling Carbon degradation Starch Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3153.8651 5436.4551 149913494 phn Organic Remediation Herbicides related compound NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3498.6349 149927706 pgk Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 3302.8628 5542.4031 10976.1264 6525.2836 330446291 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium leiognathi subsp. mandapamensis svers.1.1. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium leiognathi; 6030.5782 4051.603 7912.9377 7912.9377 2723.4321 330444417 amyA Carbon Cycling Carbon degradation Starch Chlamydophila pecorum E58 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia pecorum; 6321.2214 334882982 cellobiase Carbon Cycling Carbon degradation Cellulose Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 5256.1799 118002510 nagg Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 2725.291 3259.5596 113881510 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3605.5821 1917.5506 2688.0788 269962447 ppx Phosphorus Polyphosphate degradation NA Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 2707.2726 219537546 arra Metal Homeostasis Arsenic Detoxification Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2895.4374 17936253 xylanase Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 2242.9585 76859.3203 13960.5088 12667674 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr826-16 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 3644.3688 281421014 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 4269.0849 297555938 phn Organic Remediation Herbicides related compound NA Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 2801.9938 73763102 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4061.7989 158138753 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2492.463 3928.6372 6105.7469 183976704 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6515.7893 5990.9118 15671.4263 15671.4263 8921.6802 55772799 soxY Sulfur Sulfur Oxidation NA Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 11734.0874 2672.2118 22449987 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3376.4076 2073.2963 2073.2963 3235.7327 4937.6215 2137.6944 328448055 amyA Carbon Cycling Carbon degradation Starch Treponema succinifaciens DSM 2489 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 2404.9384 78485186 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 2316.581 148255927 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3292.0379 2398.1664 2398.1664 3520.5045 30981.5017 6502.019 4318.4036 1845.522 2441.2952 1969.3146 375160401 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 3768.2483 7721.5967 7721.5967 4339.5893 238757804 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 2765.477 56204.2414 2721.5626 261285403 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 155631.3713 112463015 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13853.6042 146301984 pme Carbon Cycling Carbon degradation Pectin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 292436.9704 167621568 chnb Organic Remediation Other Hydrocarbons NA Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 22448.2878 4997.1135 3219.4474 73748022 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 3880.1621 64742.2211 4355.7866 4641.5348 3846.0338 5594.9719 4229.0222 4425.5487 11464.4618 13446.7877 2192.3068 5600.9169 5895.0818 1892.7224 2651.1888 6630.8539 147851912 ppk Phosphorus Polyphosphate synthesis NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4469.1692 333476850 pme Carbon Cycling Carbon degradation Pectin Marinomonas posidonica IVIA-Po-181 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas posidonica; 4615.8335 12054.7355 76882662 amyA Carbon Cycling Carbon degradation Starch Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 2819.5665 3776.9089 242349635 amyA Carbon Cycling Carbon degradation Starch Staphylococcus epidermidis M23864:W1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 108722.804 333480061 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 2476.862 63634.8257 3765.0681 5876.6733 2217.9841 4650.6909 2683.2468 2946.4214 85093341 amyA Carbon Cycling Carbon degradation Starch Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 9292.0181 8030.0832 25673.4107 374610841 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 3649.8454 15915.7775 12261.5977 9741.9987 2026.4386 8012.5289 4261.8598 12191.6413 3714.9742 76577570 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3033.709 112849.1573 1928.2101 1928.2101 3289.5174 72005.9238 6708.6995 6474.604 2589.0479 2030.4151 9841.6229 1736.6787 2800.2767 2652.5778 123989817 linb Organic Remediation Pesticides related compound NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 5003.1687 12474.8578 40671.5756 307235.3145 3213.1866 116090714 endochitinase Carbon Cycling Carbon degradation Chitin Bacillus thuringiensis serovar morrisoni superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus thuringiensis; 4340.6945 850050.544 5253.5507 255292673 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4995.1017 4056.4079 3444.2681 77378545 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4382.6729 91807174 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 27024.3678 4476.9054 3119.1082 91187144 amyA Carbon Cycling Carbon degradation Starch Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 5484.1734 18111.5648 71005032 phospholipase_B_fungi virulence degradation NA Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 3486.4607 5394.3896 4120.1984 109452428 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3401.1771 338233795 urec Nitrogen Ammonification NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 2480.5268 6620.6958 18734.9398 6553.491 259348406 PRI Carbon Cycling Carbon fixation Calvin cycle Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 11856.7276 333993065 nifh Nitrogen Nitrogen fixation NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 38443.5451 238609818 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4676.8756 4809.3654 262210837 vana Carbon Cycling Carbon degradation Vanillin/Lignin Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 21988.7026 9987.0077 3506.7691 225038635 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 27692.3608 355539401 ppx Phosphorus Polyphosphate degradation NA Agrobacterium tumefaciens CCNWGS0286 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 3797.6291 342861629 ppx Phosphorus Polyphosphate degradation NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 4086.7392 274916.1952 2469.1777 2469.1777 123007.6652 4073.6506 48742.34 5058.2089 4326.3892 15926.8885 133778540 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2654.7831 128492.0361 299766916 glucoamylase Carbon Cycling Carbon degradation Starch uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 39036.9528 343518991 ppx Phosphorus Polyphosphate degradation NA Haemophilus pittmaniae HK 85 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus pittmaniae; 47986.8387 3757.4468 5903.393 2246.1558 10376.3672 353543023 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 19887.1815 187978938 ligninase Carbon Cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 2709.2502 32329.7334 111026377 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5239.2635 4551.8893 197260976 mannanase Carbon Cycling Carbon degradation Hemicellulose Bispora sp. MEY-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Bispora; 3191.4672 162451576 xylanase Carbon Cycling Carbon degradation Hemicellulose Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 5440.9115 166379.6738 4864.8684 6549.1183 3475.2514 3475.2514 12650.3818 2619.495 3708.6211 3480.9628 294340894 SoxC Sulfur Sulfur Oxidation NA Thiomonas sp. 3As superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 2576.6293 101669.5829 3456.0576 5673.9255 1652.6998 158523666 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4963.6656 116743193 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14983.4053 4643.278 345639621 merb Metal Homeostasis Mercury Detoxification Streptomyces zinciresistens K42 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces zinciresistens; 6458.8547 119988.6678 2428.1269 13264.8208 3430.2321 198266454 ppx Phosphorus Polyphosphate degradation NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 19119.6599 103484189 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4727.3689 16963.1998 325916828 pcag Organic Remediation Aromatics Other aromatics Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 4557.6296 2436.6067 167772377 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anaerotruncus colihominis DSM 17241 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Anaerotruncus;species:Anaerotruncus colihominis; 4012.1416 187108.9765 3583.2086 3583.2086 4851.6101 6595.0593 3460.5365 5224.9027 1678.8983 119946039 amyA Carbon Cycling Carbon degradation Starch Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 5897.0278 7264.1423 332014681 xylanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3740.0445 2814.5244 2814.5244 8144.0456 4218.1538 319913874 cellobiase Carbon Cycling Carbon degradation Cellulose mine drainage metagenome 11931.3049 6258.3073 3265.1057 3265.1057 8915.2466 4522.4773 3944.5712 7746.2692 3529.2037 6139.8501 3590.4014 11595.3678 192293312 fccab Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris TIE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 11185.3839 14079.3057 9070.5306 45774390 urec Nitrogen Ammonification NA Nitrosospira sp. NpAV superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 3031.1542 8523.4616 2591.6077 4810.8129 5984.4974 14186.7447 2150.5742 3332.3725 2915.5317 5681.3621 4451.418 325948509 alkk Organic Remediation Others NA Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 4091.4379 3629.3717 15144.191 3345.7689 284158785 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 3641.5468 6223.2416 6164.061 9193.2071 6593.7117 12137.8733 2323.2662 19448.3157 302423218 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 3536.2934 4162.8236 365791971 dsra Sulfur sulfite reduction NA uncultured Firmicutes bacterium superkingdom:Bacteria;phylum:Firmicutes; 3772.9797 35886.2803 212636690 nrfa Nitrogen Dissimilatory N reduction NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 161939.857 139003434 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2326.3104 8843720 bphc Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. TSN101 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 11030.6426 6317.2914 11713.7769 111918692 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3910.0566 283783732 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 409-05 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 4098.7442 7807.6963 5293.1996 1874.1035 5327.0491 291520673 cellobiase Carbon Cycling Carbon degradation Cellulose Butyrivibrio fibrisolvens 16/4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio fibrisolvens; 28082.1848 118025.3857 338210885 amyA Carbon Cycling Carbon degradation Starch Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 2813.3292 3402.2971 6348.9971 6527.5965 160917577 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5043.1523 78057320 aoxb Metal Homeostasis Arsenic Detoxification Thermus sp. HR13 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus; 2700.4171 322386524 amyx Carbon Cycling Carbon degradation Starch Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 2438.695 5794.0652 5117.8163 4242.3188 255939448 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5418.5449 395761468 nitro Organic Remediation Others NA Janthinobacterium sp. PAMC 25724 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium;species:Janthinobacterium lividum; 7682.199 117648274 endochitinase Carbon Cycling Carbon degradation Chitin Acidothermus cellulolyticus 11B superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Acidothermaceae;genus:Acidothermus;species:Acidothermus cellulolyticus; 2911.8701 3946.004 25888.5178 5245.8463 5756.7436 5756.7436 3160.8447 6966.8774 7302.5383 4765.6234 7874.7677 5291.6946 6443.2747 2578.3983 13853.6472 34121.1769 9239.7277 2851.4439 6072.2385 4319.5282 156044124 pme_Cdeg Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 11041.404 7245.7068 2921430 badh Organic Remediation Aromatics Other aromatics Rhizobium tropici superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 3087.1199 3558.8647 2961.9083 11344.5468 5592.8606 257448046 merb Metal Homeostasis Mercury Detoxification Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 6757.2733 3480.9632 4609.9507 126735577 TIM Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2772.2692 268163483 cysJ Sulfur Reduction NA Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 4154.8066 291197072 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8418.1347 8581.517 4201.5243 154310791 Dyp Organic Remediation halogenated compounds NA Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 2913.2637 5101.364 5302.1913 1804.7326 13898431 dsra Sulfur sulfite reduction NA uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 5365.0351 5684.0462 34494854 urec Nitrogen Ammonification NA Haloarcula argentinensis superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 2748.0607 7412.6256 17391.1114 19404.4495 12266.3729 332592220 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2512.1271 6445.191 30334.6576 3660656 vgb Virulence Antibiotic resistance Degradation Staphylococcus cohnii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6487.3402 224712618 hao Nitrogen Nitrification NA uncultured planctomycete superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales; 3801.2459 260621641 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 5163.3565 25054.0303 2847.5581 3454.8199 307726390 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 10160.5004 66506.0364 7965.8329 3840.0723 3840.0723 6636.3851 4355.0544 2192.0274 2558.0656 237807099 tehb Metal Homeostasis Tellurium Detoxification Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 4055.4281 363579936 beta_agarase Carbon Cycling Carbon degradation Agar Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 7813.2845 5123.3077 110825676 catechol Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 6695.9105 7835.7357 3621.8371 4423.2706 5837.4613 4481.5016 9548.3695 1860.9367 16050.4294 170741906 nira Nitrogen Assimilatory N reduction NA Methylobacterium sp. 4-46 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium; 4567.6679 4904.6637 5538.0036 227545359 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus reuteri CF48-3A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 4181.4358 3128.4321 86146537 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 18253.3771 5776.3616 157679030 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 14775.823 3602.1457 6516.8764 8182.9462 20197.5783 405554714 nbac Organic Remediation Aromatics Nitoaromatics Cecembia lonarensis LW9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cecembia;species:Cecembia lonarensis; 3380.3015 346644297 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7055.9369 57881.2349 335138.8531 4306.1211 329759385 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 10849.0284 146408100 catb Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 2753.3241 2561.7574 2561.7574 6683.5047 42952.6822 6846.0397 4559.9587 339506031 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii GR64 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 2716.9855 3597.0952 1764.0171 1764.0171 90104694 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 3094.645 340359104 nrfa Nitrogen Dissimilatory N reduction NA Actinomyces sp. oral taxon 448 str. F0400 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 448; 3638.7218 143855.9003 3912.1552 3135.4964 307607945 cysI Sulfur Other NA Bacillus amyloliquefaciens DSM 7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 2468.2974 5527.8661 254501522 soxY Sulfur Sulfur Oxidation NA Labrenzia alexandrii DFL-11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia alexandrii; 80447.575 10466.1992 4566.748 4566.748 107687.314 6114.0011 329927815 nirb Nitrogen Assimilatory N reduction NA Paenibacillus sp. HGF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 78712.1164 373461432 amyA Carbon Cycling Carbon degradation Starch Prevotella maculosa OT 289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella maculosa; 70473.0769 167599628 xylanase Carbon Cycling Carbon degradation Hemicellulose Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 72796.1214 11388.6258 6075.6378 149185551 ppx Phosphorus Polyphosphate degradation NA Erythrobacter sp. SD-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter; 67855.3321 4597.3545 2284.6213 2284.6213 5989.464 4138.885 2314.1611 3308.2545 384916616 cysI Sulfur Other NA Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 67596.7675 19328.9384 146188565 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 102319.8773 4933.245 10554.7309 8552.0394 90655623 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments uncultured marine type-A Synechococcus GOM 5D20 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 55574.4719 7329.6589 2775.4665 3456.0004 46519933 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 53663.7213 5461.4779 5462.3953 5067.3441 3916.674 2207.3483 2554.8465 3800.8896 5226.2229 319796807 SoxB Sulfur Sulfur Oxidation NA mine drainage metagenome 144108.4397 292818359 ben_bcla virulence NA NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 60827.8405 37252.9714 220720997 oxdb Organic Remediation Aromatics Nitoaromatics Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 56572.6538 3840.1998 7063.0841 119496563 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 15734038.0565 109457060 urec Nitrogen Ammonification NA Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 76481.4635 7158.0753 5923.0945 3696.7822 73021.5651 3633.3039 1975.2409 292658175 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 72323.5824 2024.8941 2024.8941 58038977 pgk Carbon Cycling Carbon fixation Calvin cycle Gluconobacter oxydans 621H superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter oxydans; 81041.5361 3491.3154 3491.3154 9834.6944 5089.1798 2211.7127 4490.4054 5294.3343 2126.4684 325982630 arsm Metal Homeostasis Arsenic Detoxification Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 78917.0299 2756.6609 4597.501 2881.5353 3808.5837 332337045 phenol_oxidase Carbon Cycling Carbon degradation Lignin Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 76966.4635 6874.2806 4016.798 2803.8632 4609.5719 311907543 amyA Carbon Cycling Carbon degradation Starch Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 84242.4024 4103.4958 4008.8218 2099.0744 2099.0744 2598.1035 7166.6478 3960.576 3619.3086 7984.9843 5204.3904 5353.3064 3264.7304 163750468 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 74437.5475 6148.7383 31159.8203 8688.6881 73539628 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 57116.5153 383780287 amyA Carbon Cycling Carbon degradation Starch Actinoplanes missouriensis 431 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes;species:Actinoplanes missouriensis; 193178.4444 4599.553 3881.8339 2540.5869 7637.6451 126703048 dehh109 Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium HTCC2150 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 61351.3524 2999.2376 164455668 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 71731.4042 3385.0368 222107055 pcag Organic Remediation Aromatics Other aromatics Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 70872.0549 68135589 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 16760968.626 42660.5801 42660.5801 3621.19 99921.9484 4688.8988 224676.5461 97369.1553 11550.3456 4209.3891 15130902 phytase Phosphorus Phytic acid hydrolysis NA Trametes pubescens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 53348.3783 8365.6244 36685.3858 66804.5529 3035.1845 8265.1088 7578.9017 7464.3344 3437.61 163488.878 350600863 arsm Metal Homeostasis Arsenic Detoxification Halomonas sp. HAL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 301471.3455 15425.321 2848.4757 2848.4757 7962.1834 8512.4043 282567678 nitro Organic Remediation Others NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 364554.4645 14703.9863 7252.9642 7252.9642 406041700 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium sp. 16F superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 69369.1337 10151.1258 3036.2831 3761.1188 33633974 terc Metal Homeostasis Tellurium Detoxification Prochlorococcus marinus subsp. pastoris str. CCMP1986 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 70718.728 316945658 arra Metal Homeostasis Arsenic Detoxification Desulfurispirillum indicum S5 superkingdom:Bacteria;phylum:Chrysiogenetes;class:Chrysiogenetes;order:Chrysiogenales;family:Chrysiogenaceae;genus:Desulfurispirillum;species:Desulfurispirillum indicum; 5453.4869 22776.7727 119718255 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 97145.6635 262220790 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 65668.6022 4416.8001 4416.8001 167628363 ppk Phosphorus Polyphosphate synthesis NA Heliobacterium modesticaldum Ice1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Heliobacteriaceae;genus:Heliobacterium;species:Heliobacterium modesticaldum; 54284.8762 2374.1669 2374.1669 7781.0709 4439.3846 2305.9216 2354.4225 2613.9766 2827.3602 332335726 cmci Organic Remediation Aromatics Other aromatics Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 1178566.8057 83026026 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 72171.6582 2165.7876 2165.7876 6302.3326 4108.8637 13323.046 13722.4676 7304.9115 9552.8863 4791.5819 5097.0513 1981.9883 3100.0171 7840.438 384525791 gdh Nitrogen Ammonification NA Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 65757.6981 3452.2096 7660.8928 3472.7206 4862.9778 7298.2186 1907.5564 2781.5789 2897.9935 2267.394 4925.7809 291544198 amyA Carbon Cycling Carbon degradation Starch Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 14713519.4036 5768.4599 5768.4599 119395298 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 60751.8296 148724095 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured soil bacterium superkingdom:Bacteria; 70418.4858 2039.9244 2039.9244 2675.7719 300390355 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 97718.645 2710.7925 373809480 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 58717.81 14806.435 5599.5037 2284.6097 6375.4899 44289.6747 2805.5575 5787.5798 9487.1565 237861573 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinula edodes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Lentinula; 72881.7204 187729502 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 103914.6227 12327.0649 327398644 arsc Metal Homeostasis Arsenic Detoxification Hippea maritima DSM 10411 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfurellales;family:Desulfurellaceae;genus:Hippea;species:Hippea maritima; 15561041.6237 227236491 amyA Carbon Cycling Carbon degradation Starch Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 3431.1406 4922.2354 2530.7718 2599.6416 5021.3101 3108.3981 14009571 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium gp23 superkingdom:Bacteria; 126604.0197 5214.2584 4858.3339 6716.6789 6252.5112 10481.6101 2612.7503 4460.1222 268608498 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 224838.9898 359684226 chitinase Carbon Cycling Carbon degradation Chitin Leptospira santarosai str. 2000030832 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira santarosai; 90319.486 6696.1773 68007700 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 191102.8364 225792396 pme Carbon Cycling Carbon degradation Pectin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 76870.1233 374632037 MCM_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera yellowstonensis MK1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera yellowstonensis; 73619.5201 33238622 PRI Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 164946.6936 304654440 cmci Organic Remediation Aromatics Other aromatics Streptomyces sp. L-49973 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 87790.9947 359835299 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 69531.736 2739.5708 372220797 phytase Phosphorus Phytic acid hydrolysis NA Mesoflavibacter zeaxanthinifaciens S86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Mesoflavibacter;species:Mesoflavibacter zeaxanthinifaciens; 63896.3995 3288.0992 3247.6762 4375.972 352095570 pgk Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 213580.2115 7534.2238 187736343 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 206541.1822 108765846 merb Metal Homeostasis Mercury Detoxification Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 198191.7231 2262.1351 2262.1351 52550403 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos9C4 superkingdom:Archaea; 67122.3583 6841.1407 4254.3421 6246.9509 4146.9794 1985.4851 4432.8117 327197279 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 65466.9389 4316.0209 15153.3995 3961.8831 12221.1768 1829.5005 3218.6756 3658.709 46138357 phospholipase_B_fungi virulence degradation NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 98504.2464 33456989 one_ring_12diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. A5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 62841.32095 5033.6163 8186.4054 4008.2097 5943.9863 2723.1984 2242.455 353180850 mmox Carbon Cycling Methane Methane oxidation Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 83627.6083 633589 cox1_Viridiplantae Other Phylogenetic NA Platymonas subcordiformis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Prasinophyceae;order:Chlorodendrales;family:Chlorodendraceae;genus:Tetraselmis; 66957.4061 5339.7251 163791451 amyA Carbon Cycling Carbon degradation Starch Carnobacterium sp. AT7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 102950.9453 2560.0488 3987.7622 11776.5948 4373.9011 3649.5972 5470.4116 304395465 phytase Phosphorus Phytic acid hydrolysis NA Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 53673.2123 6294.4869 2340.8684 398167786 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 62981.1353 1878.7265 220927477 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium cellulolyticum H10 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulolyticum; 118816.4837 88702667 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 330922.1398 5314.5347 1820.3853 2736.4186 13475801 dmdA Sulfur DMSP degradation NA Mesorhizobium loti MAFF303099 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium loti; 218435.5334 12240.9485 5169.2417 3443.6321 213987327 bend Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii AB307-0294 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 61451.2815 5310.2161 4212.9513 7041.4376 5822.4064 2399.8494 6041.2158 17277.4103 2963.5667 17130.7034 308058259 ppk Phosphorus Polyphosphate synthesis NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 64232.4289 284928960 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle cyanobacterium UCYN-A superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales; 107228.6848 301155718 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Haemophilus parainfluenzae T3T1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus parainfluenzae; 11282473.3254 5445.8169 169758208 cmci Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 62765.3171 1972.8967 2013.6119 3970.4604 2630.4994 59957018 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 66921.1537 5739.1143 4205.1074 1842.001 343798215 aps_apra Sulfur adenylylsulfate reductase NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 367502.5113 5450.9476 3085.274 18232.2266 42541225 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 62017.2676 214045455 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 297096.1164 339835447 PRK Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus sp. GGI-221 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 59911.1583 355369552 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella histicola F0411 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella histicola; 520761.6817 224463162 TIM Carbon Cycling Carbon fixation Calvin cycle Methylophaga thiooxydans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 314564.9244 91693035 chnb Organic Remediation Other Hydrocarbons NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 88037.6334 328542524 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 92778.6253 372486675 phenol_oxidase Carbon Cycling Carbon degradation Lignin Daldinia eschscholzii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Xylariales;family:Xylariaceae;genus:Daldinia; 92512.002 3636.2302 3736.8447 2696.7001 2073.8903 150014856 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 54349.3275 2081.1472 7237.9404 4656.319 1567.2764 4239.3939 3644.4649 2816.5933 7280.6209 375302912 ppx Phosphorus Polyphosphate degradation NA Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 56896.4771 147886028 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 66242.643 156109136 amyA Carbon Cycling Carbon degradation Starch Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 958630.4374 37925021 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 102852.4884 4272.7011 7119.3632 7119.3632 5894.4969 8723.4082 8851.4748 3915.589 2139.2614 5862.9617 373889420 xylanase Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 81021.3763 10172.0665 55978080 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 90133.4907 1968.82 8122.3896 55978310 aoxb Metal Homeostasis Arsenic Detoxification Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 72673.2408 9881.2865 24697.0791 6157.8465 338740385 amie Organic Remediation Aromatics Other aromatics Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 92488.1827 4447.0288 2311.2692 5949.7325 156101948 gdh Nitrogen Ammonification NA Plasmodium vivax SaI-1 superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;order:Haemosporida;genus:Plasmodium;species:Plasmodium vivax; 62365.7032 8706.5919 3848.6681 4323.103 3728.7418 2577.6105 2249.991 7476.7156 6903.406 4370.5853 6287.2108 3440.3069 3476.4109 332011899 metc Metal Homeostasis Mercury Detoxification Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 59515.271 12042.0265 6602.4055 2118.3959 146156380 RgaE Carbon Cycling Carbon degradation Pectin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 2142.4074 5402.0073 3254.9099 6310.8699 9598.3909 139003590 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 83008.9741 9058.3026 9058.3026 9170.652 3020.9189 3713.2251 20003.0766 2170.1104 2656.2802 327405500 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fluviicola taffensis DSM 16823 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Cryomorphaceae;genus:Fluviicola;species:Fluviicola taffensis; 57237.2199 5309.6575 1728.2962 353531878 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus suis R61 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 68262.9826 221157545 hcab Organic Remediation Aromatics Aromatic carboxylic acid Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 70004.2633 4217.9274 4733.7882 5365.6715 5775.1361 1869.5991 6124.3536 351594013 arsc Metal Homeostasis Arsenic Detoxification Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 61663.6145 6108.7462 8963.9589 2560.9443 296426411 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 166227.8072 4052.7696 2226.9082 354815877 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 65824.6995 3668.0495 2900.0167 7308.8255 4460.7004 4382.9763 9295.6265 2321.4051 2506.3561 17976743 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Anabaena sp. superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena; 52047.556 304425840 amyA Carbon Cycling Carbon degradation Starch Streptococcus gallolyticus subsp. gallolyticus TX20005 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gallolyticus; 63327.4475 7416.087 3935.0587 6724.2077 23247.5828 3387.6654 41172.4652 342833856 atza Organic Remediation Herbicides related compound NA Streptococcus cristatus ATCC 51100 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus cristatus; 75568.8623 3831.8184 2781.1605 6305.1535 5955.501 5646.6766 2506.1314 6036.1625 4071.9766 8002.1302 5160.8846 5753.8825 2705.6186 2759.8465 2916.4371 2366.6661 6248.0133 288556385 cysI Sulfur Other NA Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 5296728.7059 119504787 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2080 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 162190.315 168468.8541 371669773 atza Organic Remediation Herbicides related compound NA Lachnospiraceae bacterium 7_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 83170.7381 4993.7937 6435.9437 960296 chitinase Carbon Cycling Carbon degradation Chitin Aeromonas sp. 10S-24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas; 110196.0481 4912.8655 5071.8672 14484955 beta_agarase Carbon Cycling Carbon degradation Agar Microscilla sp. PRE1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla; 100203.9418 332041815 TIM Carbon Cycling Carbon fixation Calvin cycle Hylemonella gracilis ATCC 19624 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hylemonella;species:Hylemonella gracilis; 70563.5086 14473.4653 5501.1205 147847555 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 67749.0309 5660.9919 6369.876 11961.9571 6501.5164 5015.7154 7562.2381 379988505 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 122480.1067 4193.0355 4405.957 4405.957 1974.0355 327394768 arsc Metal Homeostasis Arsenic Detoxification Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 71445.3052 2300.5189 3282.4118 2639.3558 87281195 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 428751.8872 7387.9298 295969308 amyA Carbon Cycling Carbon degradation Starch Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 122719.7909 12383.2824 3620.0593 3620.0593 7739.2624 237004.1053 2167.5072 365925074 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus mali KCTC 3596 = DSM 20444 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mali; 68671.0991 6535.6958 4010.2209 6196.0124 5014.7997 5187.7836 1889.7782 2769.5938 3928.8478 2508.9257 159890847 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 68285.674 3152.9543 3152.9543 134045346 glucoamylase Carbon Cycling Carbon degradation Starch Methanococcus maripaludis C5 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 62921.096 374309429 amyA Carbon Cycling Carbon degradation Starch Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 54715.0142 4511.451 54016746 nitrilase Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 72232.575 26158.2297 10453.4822 20516721 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermoanaerobacter tengcongensis MB4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Caldanaerobacter;species:Caldanaerobacter subterraneus; 232023.7424 4837.6837 321142397 amyA Carbon Cycling Carbon degradation Starch Streptococcus parasanguinis ATCC 903 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 55221.2705 2028.6164 119952636 nhh Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 108756.3522 5465.5917 9034.6087 5108.6227 189186376 pmoa Carbon Cycling Methane Methane oxidation Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 68073.1541 4048.0725 311217014 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 110942.8413 5343.4262 8948.9659 17934087 phn Organic Remediation Herbicides related compound NA Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 69292.8003 144899345 arsc Metal Homeostasis Arsenic Detoxification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 81757.1679 4625.2748 332178859 arsc Metal Homeostasis Arsenic Detoxification Thermodesulfobium narugense DSM 14796 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Thermodesulfobium;species:Thermodesulfobium narugense; 73942.3384 339188925 cox1_Viridiplantae Other Phylogenetic NA Pseudomuriella engadinensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;genus:Pseudomuriella; 69858.972 4806.9654 32308039 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 75960.1247 14189.8347 2624.3827 13946.159 355370073 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Prevotella histicola F0411 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella histicola; 82072.3436 1786.8393 1786.8393 3308.3426 283786117 ppk Phosphorus Polyphosphate synthesis NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 63075.9929 3511.8199 3743.2159 6543.8947 5633.2936 374586166 nosz Nitrogen Denitrification NA Leptonema illini DSM 21528 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptonema;species:Leptonema illini; 63865.9698 358445342 terc Metal Homeostasis Tellurium Detoxification Corynebacterium casei UCMA 3821 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium casei; 82386.9573 146195458 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. ORS 278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 141869.9124 5880.5678 3624.6533 3624.6533 3357.8652 2715.6626 3264.352 190697239 amyA Carbon Cycling Carbon degradation Starch Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 64155.902 378728147 nitrilase Organic Remediation Aromatics Other aromatics Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 86086.9762 2188.317 2188.317 4107.0584 7802.0622 3714.5777 5464.3666 1991.432 319942244 PRI Carbon Cycling Carbon fixation Calvin cycle Sutterella wadsworthensis 3_1_45B superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella wadsworthensis; 79279.0157 3911.6682 5636.7805 3780.5298 3013.421 1840137 cyma Organic Remediation Aromatics Other aromatics Pseudomonas chlororaphis subsp. aureofaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 100137.4196 8608.2051 2403.079 76780419 amyA Carbon Cycling Carbon degradation Starch Roseburia sp. A2-194 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia; 66675.6489 4424.8791 6419.216 4224.3272 2572.7389 4793.3522 3540.1241 5961.8769 5690409 amyA Carbon Cycling Carbon degradation Starch Clostridium acetobutylicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 186576.287 262282042 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus sp. 2_1_36FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 68030.0627 225350525 nifh Nitrogen Nitrogen fixation NA Nodosilinea nodulosa UTEX 2910 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Nodosilinea;species:Nodosilinea nodulosa; 62999.9903 5198.4968 344341898 APS_AprB Sulfur adenylylsulfate reductase NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 57043.9747 7261.2141 3485.2171 7262.0908 4637.7779 5114.9877 2425.2705 5126.4551 2325.1923 2877.2001 3773.4546 2574.7897 5476.1952 219965714 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 166176.5415 9281.3087 3538.2884 3538.2884 221534989 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 214926.0591 55816.6033 148512152 one_ring_23diox Organic Remediation Aromatics Other aromatics Pseudomonas putida F1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 73399.6258 3699.6059 2558.4323 7319.065 3818.2909 5423.5928 365287692 cellobiase Carbon Cycling Carbon degradation Cellulose Bradyrhizobium sp. ORS 375 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 305577.0059 6917.8798 4506.1651 2739.9954 7738.1842 1974.0592 2744.9732 346993277 fosx Virulence Antibiotic resistance Degradation Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 15901614.6489 151357489 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 62577.2733 114332295 hao Nitrogen Nitrification NA Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 63165.6769 94197.6151 3040.4368 359404767 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 117344.4542 334889107 PRK Carbon Cycling Carbon fixation Calvin cycle Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 70799.9609 2565.8723 12736.6359 379653768 ppx Phosphorus Polyphosphate degradation NA Solitalea canadensis DSM 3403 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Solitalea;species:Solitalea canadensis; 139252.2866 299527976 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 9270697.1211 392519725 limeh Carbon Cycling Carbon degradation Terpenes Rhizobium leguminosarum bv. trifolii WU95 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 57369.579 5758.7585 5345.1174 5739.9059 4899.5486 386422597 amyA Carbon Cycling Carbon degradation Starch Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 72881.4668 5159.7343 6074.2446 384261593 ppx Phosphorus Polyphosphate degradation NA Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 192770.5811 17431362 xylg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 77061.4546 386275945 nitro Organic Remediation Others NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 110824.7999 7547.3257 386585735 tehb Metal Homeostasis Tellurium Detoxification Streptococcus suis D12 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 72746.3163 4480.0625 6143.0856 4027.3722 2641.7706 339504682 SoxC Sulfur Sulfur Oxidation NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 61598.556 3548.8965 6078.1411 4303.4542 11567.6843 8405.0828 2813.1219 9853.7281 4294.0257 5819.6694 2695.3162 5885.686 2527.906 350571272 ppx Phosphorus Polyphosphate degradation NA Neisseria wadsworthii 9715 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria wadsworthii; 78738.9508 2746.3229 2163.9092 296920742 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 63523.8288 294053913 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 133346.2556 4610.9007 3854.3102 31144.5192 2179.2414 2807.7928 225376073 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 67451.8381 351595037 xyla Carbon Cycling Carbon degradation Hemicellulose Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 89602.9628 62392076 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 63140.7809 3396.2813 7200.5454 5108.1594 10161.881 3543.0221 4677.0768 190895096 tktA Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 66509.2 238033940 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Pichia pastoris GS115 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia;species:Pichia pastoris; 76261.6281 300767663 ppx Phosphorus Polyphosphate degradation NA Lactobacillus plantarum subsp. plantarum ATCC 14917 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 593043.4362 7420.3322 6223.4674 259482314 badh Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 430425.2096 262308955 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 179728.4671 2273.4826 292663871 pgk Carbon Cycling Carbon fixation Calvin cycle Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 906724.9569 392304412 tehb Metal Homeostasis Tellurium Detoxification Paenibacillus polymyxa M1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 105870.2072 28268547 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinellus congregatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinellus; 69210.8743 23394.4879 9439.6524 5374.921 2821.0208 6199.3267 8467.2206 4382.5988 5329.0239 2014.9299 3318.9299 3434.9404 149128102 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 81290.2036 3770.0304 74053806 one_ring_12diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 76734.8718 364571736 vana Carbon Cycling Carbon degradation Vanillin/Lignin Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 69245.5171 3221.4056 121712291 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 64797.7523 52207946 phdci Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CHY-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 251568.6857 3809.4811 2853.7464 4493.9364 193213599 amyA Carbon Cycling Carbon degradation Starch Chlorobaculum parvum NCIB 8327 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum parvum; 80968.2164 3328.439 5175.22 5344.123 1928.0354 2306.0259 7913.809 112379501 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 86476.9025 229493097 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 66799.7058 4681.1744 334144854 xylanase Carbon Cycling Carbon degradation Hemicellulose Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 111812.6518 9721.0349 9721.0349 11658.7792 9066.1402 3453.5877 2301.9351 3580.6458 20643.9757 357596199 phdci Organic Remediation Aromatics Polycyclic aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 96703.6889 70672941 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 70529.6105 3442.3734 3316.3589 8642.4318 4450.1266 4796.3849 6115.0645 2480.2391 2753.1606 6525.6508 10517.5245 5457.4194 6396.9233 3516.9287 4638.562 2138.4891 6001.0324 169768660 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 541817.5681 227937699 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured Alkaliphilus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus; 2018.7399 4502.047 3452.7415 5209.0872 5437.8791 2502.2559 1954.4739 7361.4879 3756.8872 14632.6017 1945.1445 333917860 linb Organic Remediation Pesticides related compound NA Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 89849.8893 3203.0468 3334.3286 110962351 B_lactamase_A Virulence Antibiotic resistance Degradation Salmonella typhimurium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 124237.2869 37526444 nfsb_2 Organic Remediation Aromatics Nitoaromatics Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 144976.4378 260552284 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus fermentum 28-3-CHN superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus fermentum; 158272.6172 403660208 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 64953.8523 4143.8574 48703.9829 2480.5316 2963.068 392373260 exaa(moxf) Organic Remediation Chlorinated solvents NA Candidatus Methylomirabilis oxyfera superkingdom:Bacteria;genus:Candidatus Methylomirabilis; 76622.0964 56178197 nitro Organic Remediation Others NA Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 62224.9237 300545523 amyA Carbon Cycling Carbon degradation Starch Klebsiella sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; 76961.4682 15524.7843 9164.6088 56962046 B_lactamase_A Virulence Antibiotic resistance Degradation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 188858.8172 330807480 TIM Carbon Cycling Carbon fixation Calvin cycle Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 77974.5071 4572.535 5016.8969 4291.9133 4521.5783 2314.817 4936.7019 3493.5458 395323409 badh Organic Remediation Aromatics Other aromatics Dichomitus squalens LYAD-421 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus;species:Dichomitus squalens; 58250.2843 4439.9433 295441245 limeh Carbon Cycling Carbon degradation Terpenes Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 65363.2142 4607.539 1398974.4517 345015847 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces violaceusniger Tu 4113 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces violaceusniger; 63608.5111 1920.7568 119449774 linb Organic Remediation Pesticides related compound NA marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 92347.9419 18476.4609 18476.4609 3572.7007 160917540 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 58655.5106 375101255 ara Carbon Cycling Carbon degradation Hemicellulose Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 85346.1533 3757.9451 3399.5802 378597503 fccab Sulfur Sulfide Oxidation NA Sutterella parvirubra YIT 11816 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Sutterellaceae;genus:Sutterella;species:Sutterella parvirubra; 84209.9904 3748.8603 90022295 beta_agarase Carbon Cycling Carbon degradation Agar Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 57593.0647 145228397 badh Organic Remediation Aromatics Other aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 199491.9155 124362615 dsra Sulfur sulfite reduction NA Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 68502.8446 222354070 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 309549.4349 347523817 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 64727.7339 7214.3084 56964560 fosb Virulence Antibiotic resistance Degradation Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 142637.3464 8545.9705 336297041 terc Metal Homeostasis Tellurium Detoxification Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 140266.2748 2764.0534 3626.2527 5324.038 1819.832 194277408 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. DK17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 67809.2479 6010.7609 5979.7102 5085.1647 2293.8867 78102459 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 61607.4336 8313.2768 2741.5296 2741.5296 49871.5066 6394.4859 12605.7387 8531.1922 4147.617 14469.9043 212538145 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 98038.9567 119356088 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 16045820.6519 4050.7243 10528.0017 146402525 poba Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 54830.6015 384083943 SoxA Sulfur Sulfur Oxidation NA Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 84648.8851 9939.2979 9939.2979 19269.2063 83773154 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 69838.8525 5541.2064 5541.2064 219849583 pula Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 66818.4197 6371.003 9290.8782 5525.9335 4607.4033 94665.917 2947.5346 4579.2615 5354.8586 158308724 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 65159.7335 2559.043 254477642 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 66762.8816 3938.5374 3374.7557 5611.6033 3316.5193 2318.4035 3026.8951 2743.5328 34017190 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 545013.5765 17299.0808 2594.0479 2266938 ligninase Carbon Cycling Carbon degradation Lignin Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 64539.5816 4113.8921 3098.8688 9702.6349 6098.3564 4232.7445 381160749 amyA Carbon Cycling Carbon degradation Starch Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 461496.9017 157692598 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 79702.431 5677.9408 5910.7765 99037713 nbac Organic Remediation Aromatics Nitoaromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 140566.1591 3296.9325 354565629 amyA Carbon Cycling Carbon degradation Starch Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 61816.5612 5703.9269 3257.0342 6673.1563 151302171 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio sp. La2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 77134.6004 17341.2171 3156.8739 3156.8739 374855677 nosz Nitrogen Denitrification NA uncultured candidate division OP1 bacterium superkingdom:Bacteria; 504878.2467 8554.4345 12400.7732 5311.3162 66635.4855 7825.6204 10296.7972 2977.0147 21743569 bphc Organic Remediation Aromatics Polycyclic aromatics Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 270508.8303 4761.459 9523.2698 239594726 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 55064.8221 315277779 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 78124.2605 219868933 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 54990.3514 4066.2356 2327.0055 2135.6108 75910906 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 66259.2777 356960150 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin gamma proteobacterium SCGC AAA001-B15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 63784.082 112462703 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 89352.6433 119377721 phn Organic Remediation Herbicides related compound NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 66744.1803 3955.8103 6524.3299 3017.9997 9661.5081 4121.5923 281423421 cda Carbon Cycling Carbon degradation Starch Prevotella oris F0302 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 62871.6731 7220.3583 2085.248 2085.248 4360.7377 1752.6797 157679006 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 57382.5252 3308.1759 3164.0715 218722616 nagg Organic Remediation Aromatics Aromatic carboxylic acid Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 58948.2874 7490.3519 4934.2554 2579.2494 13277513 endoglucanase Carbon Cycling Carbon degradation Cellulose Clavibacter michiganensis subsp. sepedonicus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Clavibacter;species:Clavibacter michiganensis; 67132.7553 8422.0896 3221.4705 6281.8423 2515.5373 5931.033 67920647 dehh Organic Remediation Chlorinated solvents NA Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 144275.0364 5085.0191 21646979 soxY Sulfur Sulfur Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 95591.3253 4619.0104 2423.7936 2423.7936 8477.9321 289174400 ppx Phosphorus Polyphosphate degradation NA Xenorhabdus bovienii SS-2004 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Xenorhabdus;species:Xenorhabdus bovienii; 122651.2815 390927327 bphc Organic Remediation Aromatics Polycyclic aromatics Burkholderia thailandensis MSMB43 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia thailandensis; 59418.6468 3883.1355 4831.1982 3421.4394 189207875 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 68751.7286 4015.759 4439.3266 3738.1853 3738.1853 4231.0344 6262.1583 5668.2545 4872.0871 8779.1125 2991.8503 3844.3746 2794.1591 81300234 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 74262.7179 8157.2909 7111.1477 10549.604 342323594 arylest Organic Remediation Aromatics Other aromatics Vibrio mimicus SX-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio mimicus; 57077.4454 4094.9704 2558.693 3572.7132 4807.3517 5836.3296 3409.0003 23305801 phenol_oxidase Carbon Cycling Carbon degradation Lignin Phaeosphaeria spartinicola superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria; 314080.9185 284035540 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 122269.2668 33216.9145 238572985 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 354799.8954 282880592 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 72198.9754 225848745 sqr Sulfur Sulfide Oxidation NA Sulfurihydrogenibium azorense Az-Fu1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium;species:Sulfurihydrogenibium azorense; 73217.1755 7491.0374 6534.4245 4289.1448 4071.8991 6182.867 5728.4707 3436.7961 3304.7916 5617.2699 154316951 amyA Carbon Cycling Carbon degradation Starch Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 100762.6384 75187254 ppx Phosphorus Polyphosphate degradation NA Escherichia coli E24377A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia coli; 285617.9755 17131307 phn Organic Remediation Herbicides related compound NA Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 201185.6229 99083357 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 69945.3893 7761.1248 330965175 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas syringae pv. actinidiae str. M302091 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 161337.3012 3920.9038 5579.5972 4376.5651 343086475 alginase Carbon Cycling Carbon degradation Alginate Cyclobacterium marinum DSM 745 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Cyclobacterium;species:Cyclobacterium marinum; 68145.9549 3704.58 6610.4053 4127.9302 5452.1906 5497.3974 3406.765 229382508 cellobiase Carbon Cycling Carbon degradation Cellulose Coprobacillus sp. D7 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 154047.7468 328522490 pme Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 69908.0107 5181.0685 2826.0325 283797475 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium sp. M62/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 114289.1288 4039.7596 353180178 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 800765.9782 2803.2274 2803.2274 109714295 gdh Nitrogen Ammonification NA Helicobacter acinonychis str. Sheeba superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter acinonychis; 68740.1465 2599.545 5987.7465 3647.5521 5336.6616 1769.4061 333892986 cda Carbon Cycling Carbon degradation Starch Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 15586516.0914 154276082 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 63775.1099 365747691 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 95437.959 3618.7978 4753.783 6259.7228 2254.0894 16506227 nasa Nitrogen Assimilatory N reduction NA Vibrio diazotrophicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 68849.2023 5825.6366 269100062 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 823877.5969 3027.8361 3027.8361 11605.7559 5151.8012 49176897 tfda Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 111254.0594 4895.5782 2897.9238 2622.4298 4996.7998 2485.8842 3112.957 119513724 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 62453.8001 6798.1502 2858.5841 156033342 Dyp Organic Remediation halogenated compounds NA Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 1003638.1233 8845.3327 385246833 amyA Carbon Cycling Carbon degradation Starch Anoxybacillus sp. DT3-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus; 434301.7471 88792058 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 84745.6661 5526.1253 5628.4189 4232.5242 2086.025 2381.0653 109640306 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 71089.5615 10288.2377 7397.9827 4208.2974 2888.346 4332.3501 3100.23 77957751 urec Nitrogen Ammonification NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 68945.3489 9171.1294 340351950 amyA Carbon Cycling Carbon degradation Starch Prevotella pallens ATCC 700821 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella pallens; 206390.19095 317056044 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 66268.4322 68273.2418 4281.3154 4908.8272 149276799 xlnd Organic Remediation Aromatics Other aromatics Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 67634.6917 295658360 mannanase Carbon Cycling Carbon degradation Hemicellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 105295.7842 219850336 glucoamylase Carbon Cycling Carbon degradation Starch Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 602341.8212 86808.2692 6542.4784 3356.5051 3356.5051 4276.9619 5511.9804 8593.8987 83646718 narg Nitrogen Denitrification NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 66728.4761 302887400 p450aro Organic Remediation Aromatics polycyclic aromatics Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 57423.5621 2880.5532 5588.4745 22008.4734 3618.4719 15519.1932 2346.9644 212536646 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 80904.6205 3968.1337 2188.3825 5945.1981 9700.7219 5487.736 239517161 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridiales bacterium 1_7_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 75368.0735 3208.7663 5298.0747 7538.973 1751.0283 2339.4931 163739874 alkb Organic Remediation Other Hydrocarbons NA Phaeobacter gallaeciensis BS107 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Phaeobacter;species:Phaeobacter gallaeciensis; 100637.9334 13874.0965 13874.0965 7338.0328 224536682 amyA Carbon Cycling Carbon degradation Starch Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 56598.6512 5254.3069 3602.554 3958.6008 8640.7573 4872.8975 4344.9166 5568.8121 4285.1892 2614.6411 5193.1362 9085.9898 3576.3956 6008.3733 2855.295 3570.6904 4158.3075 3679.1331 6498.9421 5689248 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 100406.2147 3980.2608 2868.4171 4017.2095 148342404 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 147863.2471 6523.068 148503267 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 82727.0585 3569.5718 5668.4384 3105.8767 3105.8767 7335.0291 4161.0226 2959.7168 8946.7633 4274.9214 5590.8695 6242.6393 3402.2917 121708778 amyA Carbon Cycling Carbon degradation Starch Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 170238.7206 60476235 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 77356.4978 2621.8415 2621.8415 11905.7212 379990691 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 85102.5303 6752.2524 2715.6703 5265.2211 8625.6106 2268.6423 4802.5335 5169.6397 3228.5475 4878.1649 2270.3196 46917286 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5020009.0074 8078.9295 8078.9295 12720.6725 4319.3512 14244.2568 7327.9445 12211.3253 5477.9113 57867797 urec Nitrogen Ammonification NA Staphylococcus epidermidis RP62A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus epidermidis; 59899.1521 345879154 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 237196.2476 6302.7866 6876.855 2432.7344 359788925 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 54992.7961 3238.7802 8614.7058 3938.4246 4833.5685 2123.441 2178.9925 384068154 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 51707.8687 5640.6515 169772145 amyA Carbon Cycling Carbon degradation Starch Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 86688.3303 342825535 amyA Carbon Cycling Carbon degradation Starch Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 126680.0975 322433053 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 64584.7658 2021.7165 2021.7165 2733.3686 5359.4039 2310.1661 3258.4225 242762775 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 52904.356 1854.9656 269096546 amyA Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 90028.9979 4582.6935 4767.6953 153812634 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 90764.3154 112462241 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 63757.6483 46651.1733 332828811 xylanase Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 71248.5165 120324019 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 55835.6363 4597.4142 2488.5081 2736.2541 5678.5758 1652157 mer Metal Homeostasis Mercury Detoxification Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; 501731.1377 15605783 fccab Sulfur Sulfide Oxidation NA Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 78827.359 4329.0889 6491.2716 6254.7583 4548.6646 1988.2392 3724.0338 333605129 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 74568.2609 11070.852 343500539 amyA Carbon Cycling Carbon degradation Starch Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 64426.1879 8515793 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 13443396.7235 7909.4272 60593145 dsra Sulfur sulfite reduction NA uncultured prokaryote 507770.18 145553776 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 61615.2851 90954607 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 221451.8765 5839.9223 3025.3505 154282003 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 60309.4578 5025.6652 3499.3783 2024.8134 5151.6787 3051.5255 4623.2591 421953048 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 66132.0737 4162.5508 5518.6319 350559868 PRK Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio thiocyanoxidans ARh 4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio thiocyanoxidans; 61956.381 4112.5927 52629.8337 148550668 limeh Carbon Cycling Carbon degradation Terpenes Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 73421.652 12300.054 12300.054 3971.2158 1869.5788 3758.1309 2592.6024 4927.1613 34482870 arsc Metal Homeostasis Arsenic Detoxification Wolinella succinogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella; 67643.6462 4872.5754 347011019 badh Organic Remediation Aromatics Other aromatics Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 78954.0753 124025512 FBPase Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. NATL1A superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 49366.3395 383338855 terc Metal Homeostasis Tellurium Detoxification Mycobacterium xenopi RIVM700367 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium xenopi; 68211.3123 88708231 amyA Carbon Cycling Carbon degradation Starch Maribacter sp. HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 64065.0903 88362.6498 5744.3443 227341897 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 77176.7493 4534.0524 10036.248 218144612 tehb Metal Homeostasis Tellurium Detoxification Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 399459.5413 60476058 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 99717.4782 90588147 amyA Carbon Cycling Carbon degradation Starch Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 91929.8951 84778337 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 162756.4054 167594203 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 98914.5256 3855.46 1903.886 3051.3866 83316908 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 67834.8809 2464.179 4777.1783 295094794 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Coprococcus sp. ART55/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus; 213148.4126 6874.3636 9286.5971 2333.9426 308212489 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 71990.3601 3504.1936 2444.1041 5798.3953 1891.2842 2608.5148 353347726 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes indistinctus YIT 12060 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 605430.2009 37357.201 5893.4675 4004.1538 4053.1684 2863.9104 2420.6235 5371.9623 14174.8827 2067.5801 2829.1708 4085.5877 328523991 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 80310.5406 4874.8887 422314205 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 59328.9025 802878.8112 219992371 APS_AprB Sulfur adenylylsulfate reductase NA Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 100989.277 4958.7975 5700.7859 11740.7861 5068.8661 5332.1116 1982.3809 2689.2525 3355.151 222080223 chnd Organic Remediation Other Hydrocarbons NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 135547.4831 5854.3749 5854.3749 6515.0807 13899.6835 5389.2314 5439.3136 88806539 arylest Organic Remediation Aromatics Other aromatics Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 15398124.8761 52064.1531 422313977 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 102366.0806 9238.3749 8908.3481 14939.8495 3921.8848 5178.83 2179.9386 4330.7645 343494903 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 77333.9704 8595.4456 12625.6852 302417031 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 58058.8748 4707.6861 4134.3607 4134.3607 221060364 gdh Nitrogen Ammonification NA Plasmodium knowlesi strain H superkingdom:Eukaryota;phylum:Apicomplexa;class:Aconoidasida;order:Haemosporida;genus:Plasmodium;species:Plasmodium knowlesi; 328570.6046 407308409 cmci Organic Remediation Aromatics Other aromatics Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 66391.3132 3978.4805 4872.7315 4872.7315 3960.9545 2864.97 7261.2047 3532.0917 5341.2579 2926.4832 3749.0041 151302209 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacter sp. DSM 2035 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter; 77982.1323 2181.5994 2181.5994 4812.5628 319926452 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 144231.0877 4096.9334 4838.283 2078.2529 229473049 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 119868.8631 226284014 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Paracoccidioides brasiliensis Pb01 NA 86632.2258 3575.6609 308748256 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Enterobacter cloacae SCF1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter lignolyticus; 101029.4185 5769.6879 206565916 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Klebsiella pneumoniae 342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 57437.9443 90416022 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway marine gamma proteobacterium HTCC2207 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 124627.5696 88866443 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 81627.6604 5528.2929 6735.0069 358010590 nitro Organic Remediation Others NA Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 449855.5483 2826381 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 126721.1383 260891074 amyA Carbon Cycling Carbon degradation Starch Leptotrichia hofstadii F0254 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia hofstadii; 116257.4916 4144.1059 5320.7651 2422.74 6813.6693 3618.1753 4191.0101 5273.6218 3887.2639 3015.128 5919.3333 8005.6843 1848.5971 2879.6761 3658.5845 2224.596 4727.1664 260838316 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 90485.0007 6737.7386 2248.1884 377820664 arylest Organic Remediation Aromatics Other aromatics Burkholderia sp. YI23 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 63421.2143 6987.722 189202078 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 81344.2072 3105.4009 2615.0407 380502239 ppx Phosphorus Polyphosphate degradation NA Flavobacterium indicum GPTSA100-9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium indicum; 135309.0812 169858289 glucoamylase Carbon Cycling Carbon degradation Starch Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 151739.2886 8656.2468 3933.3189 6516.3002 4649.0845 4649.0845 129025.1102 2452.4986 7036.8143 11986.734 5292.9256 2907.6454 309306970 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 3348353.337 160917743 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 108032.1439 4576.3716 3932.8698 3932.8698 9065.439 31335.2924 22823.1895 5188.5437 20925.6091 2250.5906 3012.3605 8573.4316 6522.814 152991895 napa Nitrogen Dissimilatory N reduction NA Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 223192.3146 2161.0504 298592829 mer Metal Homeostasis Mercury Detoxification Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 1068697.5417 9709.9768 316981140 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 60278.7593 4340.5401 7758.2778 4797.2358 3848.7656 2074.1969 3221.4406 110621572 nifh Nitrogen Nitrogen fixation NA uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 108881.037 5137.589 4453.4302 8063.1394 3437.3741 114778200 sqr Sulfur Sulfide Oxidation NA Mariprofundus ferrooxydans PV-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Zetaproteobacteria;order:Mariprofundales;family:Mariprofundaceae;genus:Mariprofundus;species:Mariprofundus ferrooxydans; 73607.3562 54683.3861 146404229 pgk Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 101679.9575 342806915 rd Organic Remediation Chlorinated solvents NA Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 69887.5482 7219.2177 4646.4103 4428.4654 2377.958 9085.5524 4545.8709 2208.034 6683.7667 126105539 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 63825.121 322411029 amyA Carbon Cycling Carbon degradation Starch Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 88263.3428 342872593 badh Organic Remediation Aromatics Other aromatics Fusarium oxysporum Fo5176 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium oxysporum; 83446.0089 5436.5803 93138989 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 132052.6919 4688.8457 4880.5412 4880.5412 149192283 TIM Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 81292.3713 302417540 pel_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 106654.2337 16217.579 2002.0407 379990461 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 397050.7763 6769.8405 16528.1739 4779.7182 2705.1289 12648.0495 5701.5759 2503.0627 139003122 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 69622.3739 3457.7643 1746.8455 3093.0276 319796801 SoxC Sulfur Sulfur Oxidation NA mine drainage metagenome 81439.0127 3606.1354 8045.8375 5238.0119 4834.8969 2699.2998 2199.671 8518.8355 152992791 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurovum sp. NBC37-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 126926.7835 3983.7099 4064.7652 3540.1004 3540.1004 7856.0164 12022.6532 4100.9211 6505.2524 2594.1933 3300.7596 3731.7501 388565265 tpha Organic Remediation Aromatics Aromatic carboxylic acid Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 56604.8483 3487.8415 4505.0076 5908.5735 4242.9693 283481834 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 86718.4234 406038807 nfsb_2 Organic Remediation Aromatics Nitoaromatics Acinetobacter ursingii DSM 16037 = CIP 107286 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter ursingii; 68840.2224 349792252 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 74555.4434 346993895 FBPase Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 61574.3124 4548.0989 2666.5571 3145.658 77958817 phn Organic Remediation Herbicides related compound NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 89732.8085 49838.9407 1319823.4314 3592.0981 372323953 cellobiase Carbon Cycling Carbon degradation Cellulose Oenococcus kitaharae DSM 17330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus kitaharae; 15696901.7711 1599.8631 2840.743 310896317 terc Metal Homeostasis Tellurium Detoxification Lactobacillus crispatus CTV-05 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 434761.8601 4393.4167 221737685 amyA Carbon Cycling Carbon degradation Starch Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 215530.8603 320101998 amyA Carbon Cycling Carbon degradation Starch Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 60979.8343 77740782 arsc Metal Homeostasis Arsenic Detoxification Rhodopseudomonas palustris BisA53 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 103113.6857 4577.1039 5955.7559 6275.2091 18034189 aps_apra Sulfur adenylylsulfate reductase NA Desulfobacula toluolica superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacula;species:Desulfobacula toluolica; 128749.1863 343197803 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3192601.976 6247.7877 6247.7877 7693.6118 3961.5796 17594.6189 7458.7223 8413.2116 3837.605 3476.3054 319414002 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 106097.8013 7009.4973 2496.3419 5909.0004 3596.6998 3587.4446 4055.3791 5298.4041 8945.9822 2092.0992 9993.9718 2803.6345 2020.8868 219053412 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 809214.3892 18703.4375 238751371 amyA Carbon Cycling Carbon degradation Starch Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 90242.0539 5125.192 396771 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 65008.6077 290467755 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 52717.3618 2848.2152 288897508 TIM Carbon Cycling Carbon fixation Calvin cycle Allochromatium vinosum DSM 180 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Allochromatium;species:Allochromatium vinosum; 64643.5937 14073.7335 14073.7335 12173.1547 4293.3194 2757.3856 350275098 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 72797.429 89075180 FBPase Carbon Cycling Carbon fixation Calvin cycle Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 581029.0614 7854.3679 119775970 Sir Sulfur sulfite reduction NA Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 58948.5664 70930908 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 114416.672 156972709 phenol_oxidase Carbon Cycling Carbon degradation Lignin Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 61420.2605 196482346 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 80451.4712 4879.1398 56461438 gdh Nitrogen Ammonification NA Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 56882.188 3777.4678 4056.3781 5526.1125 63029749 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 569780.3335 3737.0964 3533.7202 7457.2049 10847.6358 3165.2774 2906.3021 4221.0615 365258506 amyA Carbon Cycling Carbon degradation Starch Actinomyces graevenitzii C83 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces graevenitzii; 84957.2274 3974.91 325106426 RgaE Carbon Cycling Carbon degradation Pectin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 79064.4143 2511.7202 3431.3493 3763.2112 1738.4659 3223.6522 4966.2485 68164688 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 205494.7889 10703.5231 355575946 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Olsenella sp. oral taxon 809 str. F0356 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Olsenella;species:Olsenella sp. oral taxon 809; 77125.6957 3534.2852 3706.8219 2772.2682 9388.7133 2426.5092 3248.6403 110637666 urec Nitrogen Ammonification NA Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 165787.3126 5175.977 4006.2084 3941.0095 5695.3057 4967.2343 4587.2303 119473371 glucoamylase Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 124281.764 377542750 arsc Metal Homeostasis Arsenic Detoxification Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 63075.5056 6300.0282 261361114 rgh Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 58261.5278 111019506 catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 83256.653 40313560 dsra Sulfur sulfite reduction NA Pelotomaculum sp. MGP superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum; 7415.8702 3794.0685 60493579 ppx Phosphorus Polyphosphate degradation NA Bacteroides fragilis NCTC 9343 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 3705.9172 148842213 nrfa Nitrogen Dissimilatory N reduction NA Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 3473.8526 2594.4093 2594.4093 3524.5059 5787.0455 16680.4181 3438.1162 84696894 nitrilase Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5736.1627 7975.2696 4767.5501 2077.1083 344690078 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 28706.2505 407214939 nitro Organic Remediation Others NA Idiomarina xiamenensis 10-D-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina xiamenensis; 5245.605 162568505 aoxb Metal Homeostasis Arsenic Detoxification Acidovorax sp. 75 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4469.4856 5665.7614 5665.7614 7470.5191 2208.3217 5028.6552 2515.4361 3160.8828 191639526 ppx Phosphorus Polyphosphate degradation NA Lactobacillus casei BL23 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 4252.7624 194537769 ppx Phosphorus Polyphosphate degradation NA Vibrio cholerae V51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 5280.6625 6357.3503 3452.181 4050.456 254431172 urec Nitrogen Ammonification NA Cyanobium sp. PCC 7001 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanobium; 4826.1368 4642.1112 2017.4729 2017.4729 5537.364 5565.6115 2222.7459 3765.9094 2693.1076 126236581 xylj Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 5258.5049 9222.0048 4383.8332 11785.5357 5790.5593 5103.6549 2682.1778 2202.1736 3197.2829 4081.7523 6849.9709 10809.6404 198262985 ppx Phosphorus Polyphosphate degradation NA gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 20923.3704 227164357 xyla Carbon Cycling Carbon degradation Hemicellulose Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 4424.7063 223039298 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 4964.2914 69954064 dsrB Sulfur sulfite reduction NA Desulfovibrio desulfuricans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 56946.3493 304395352 arsc Metal Homeostasis Arsenic Detoxification Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 6159.7526 4988.2447 4622.6081 2345.7983 1721.4255 2794.4774 82452837 endochitinase Carbon Cycling Carbon degradation Chitin Francisella tularensis subsp. novicida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella; 5820.6741 193873617 bphc Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 5087.1527 5567.9035 6144.9946 3320.5705 5009.539 120613304 terc Metal Homeostasis Tellurium Detoxification Acidovorax citrulli AAC00-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax citrulli; 7828.8051 333734376 ara Carbon Cycling Carbon degradation Hemicellulose Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 3506.2086 239517815 ara Carbon Cycling Carbon degradation Hemicellulose Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 5427.0349 2152.8559 2152.8559 189347345 terc Metal Homeostasis Tellurium Detoxification Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 4653.7731 56909275 amyA Carbon Cycling Carbon degradation Starch Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 4871.3051 6117.3712 4495.262 302901099 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 14972.5912 5038.8888 5038.8888 3530.6163 10452.2938 1894.2069 3745.9451 302384012 amyA Carbon Cycling Carbon degradation Starch Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 4348.9968 5130.3654 384431142 catechol_b Organic Remediation Aromatics Other aromatics Thermus thermophilus SG0.5JP17-16 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 4217.9611 2030.3698 2030.3698 4948.8562 6107.2838 295799363 cysJ Sulfur Reduction NA Mannheimia succiniciproducens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia; 3961.4704 2236.675 354613688 dmdA Sulfur DMSP degradation NA Saccharomonospora paurometabolica YIM 90007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora paurometabolica; 8892.358 9507.3891 5778.9044 219950412 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium nodulans ORS 2060 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium nodulans; 33473.6861 2451.0311 2451.0311 11699.5203 3894.8391 7027.6365 5374.7577 6303.3404 358376990 gdh Nitrogen Ammonification NA Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Blattabacteriaceae;genus:Blattabacterium;species:Blattabacterium punctulatus; 15548.7319 90329402 rd Organic Remediation Chlorinated solvents NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4625.6359 5816.8589 239816285 tktA Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 6798.3007 7466.0605 145299277 nrfa Nitrogen Dissimilatory N reduction NA Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 3879.459 4152.5071 5105.998 6934.4914 4527.0882 50084188 nagg Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7758.5423 3275.3195 57242654 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 7351.9255 2376.1615 3474.6095 2840.732 134081093 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3782.2389 4815.3083 2995.8776 4426.2621 21425.2354 3945.445 347813919 arsc Metal Homeostasis Arsenic Detoxification Aggregatibacter aphrophilus ATCC 33389 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter aphrophilus; 4071.7819 16506229 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 4183.0939 4873.7631 66853246 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 15710.1066 5023.9516 527640.6411 297165499 xylanase Carbon Cycling Carbon degradation Hemicellulose Truepera radiovictrix DSM 17093 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Trueperaceae;genus:Truepera;species:Truepera radiovictrix; 4384.8183 2863.9618 5876.3275 4625.3899 3538.9704 73671381 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4587.3998 4000.0021 4336.9975 4162.9645 1785.9785 3455.8524 321163620 arylest Organic Remediation Aromatics Other aromatics Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 4060.6272 312961236 nirb Nitrogen Assimilatory N reduction NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4717.0921 14160.7917 45772.6542 3094.4307 11195.525 22786.8989 156450625 urec Nitrogen Ammonification NA Methylobacterium chloromethanicum CM4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium chloromethanicum; 7123.2026 359452414 phytase Phosphorus Phytic acid hydrolysis NA Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 8163.4307 74038406 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3498.6593 5534.1122 4716.283 19910.5922 208936487 dsrB Sulfur sulfite reduction NA uncultured prokaryote 14691.427 6354.6157 2562.5192 4952.0187 16123.8035 3992.9231 149228546 amyA Carbon Cycling Carbon degradation Starch Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 3575.3354 3825.3942 12827.6315 1819.8656 6253.2762 88814640 arsc Metal Homeostasis Arsenic Detoxification marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; 18665.749 6352.4387 6535.3178 13494.5939 383513918 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7228.5771 2539.9185 2539.9185 4267.0591 77378507 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13675.3495 169852960 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4668.6539 4263.4517 413931729 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4324.7633 2083.9403 2083.9403 4016.1598 2174.2245 5366.7005 2547.473 2032.7462 261360581 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticillium;species:Verticillium alfalfae; 20143.2946 6728.5489 6728.5489 9642.3402 2342.1434 59572.4623 27650.2613 5221.0868 422314409 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4508.2728 37726795 dsrB Sulfur sulfite reduction NA Desulfobacca acetoxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca; 9730.8842 3809.6397 3835.6964 6790.2479 389662938 alkb Organic Remediation Other Hydrocarbons NA Nitritalea halalkaliphila LW7 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Nitritalea;species:Nitritalea halalkaliphila; 3765.5453 2817.5577 359407798 pgk Carbon Cycling Carbon fixation Calvin cycle SAR116 cluster alpha proteobacterium HIMB100 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 10576.8106 3363.2722 295104102 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii SL3/3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 24594.9899 17381.0965 1782.3674 242812473 glx Carbon Cycling Carbon degradation Lignin Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 12718.0183 332377300 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7687.6544 11107.334 9788.5836 6006.1339 8165.4565 338998582 B_lactamase_A Virulence Antibiotic resistance Degradation Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 4796.6622 6787.6223 356478327 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 4810.8684 3340.9441 145218966 fccab Sulfur Sulfide Oxidation NA Chlorobium phaeovibrioides DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 3940.5041 6120.7705 4615.484 4763.9332 3002.2249 2307.0419 4473.3186 325110969 amyA Carbon Cycling Carbon degradation Starch Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 4689.1257 30217.5118 27244.1272 90821784 terc Metal Homeostasis Tellurium Detoxification Lactobacillus salivarius subsp. salivarius UCC118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus salivarius; 22857.9701 119446198 amyA Carbon Cycling Carbon degradation Starch Alteromonadales bacterium TW-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 41720.3532 323494074 atzb Organic Remediation Herbicides related compound NA Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 7743.2859 3596.1756 7991.4902 94471303 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9397.8271 121611870 exaa(moxf) Organic Remediation Chlorinated solvents NA Verminephrobacter eiseniae EF01-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Verminephrobacter;species:Verminephrobacter eiseniae; 5725.1636 3186.3508 281403876 RgaE Carbon Cycling Carbon degradation Pectin Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 6424.1747 209694004 cysI Sulfur Other NA Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8196.136 354565904 xylanase Carbon Cycling Carbon degradation Hemicellulose Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 62120.6353 291381013 cellobiase Carbon Cycling Carbon degradation Cellulose Bifidobacterium breve DSM 20213 = JCM 1192 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 14735.1174 2090.0801 5882.1864 2284.9942 75812768 linb Organic Remediation Pesticides related compound NA Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 5551.2963 4604.8895 3132.0114 10707.1881 4745.8401 119409141 bph Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 3575.3155 3313.176 3762.4359 1662.172 2954.3861 119535317 limeh Carbon Cycling Carbon degradation Terpenes Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 8402.29 7874.7027 6831.7046 6831.7046 3921.2423 11400.101 19944.5922 7312.7227 13533.6313 11547.8911 4785.4648 5475.3346 3120.4202 44243575 catechol_b Organic Remediation Aromatics Other aromatics Sphingomonas sp. A1-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 10233.5808 5805.9996 149928382 arylest Organic Remediation Aromatics Other aromatics Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 4412.5357 3327.1741 7283.6835 11958.33 5392.9136 2263.7234 3063.1864 4129.8853 5462.4184 338974036 phn Organic Remediation Herbicides related compound NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 19632.8521 227114081 Sir Sulfur sulfite reduction NA Pectobacterium carotovorum subsp. brasiliensis PBR1692 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 4606.196 2444.1782 2444.1782 9811.077 383819427 bphd Organic Remediation Aromatics Polycyclic aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 873481.5948 260840386 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3819.2599 2779.6571 269097163 amyA Carbon Cycling Carbon degradation Starch Sanguibacter keddieii DSM 10542 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Sanguibacteraceae;genus:Sanguibacter;species:Sanguibacter keddieii; 24918.4717 7405.9956 10647.608 10647.608 4130.9797 6279.8602 4135.0227 5611.6367 4782.3782 9015.2698 4234.9784 6053.9475 1820.3091 3876.5619 3207.155 2904.3004 156861694 amyA Carbon Cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 4010.3457 5590.6895 5291.1775 5043.4862 4163.922 2261.9909 1968.3238 1860.9065 4338.6449 354824339 nifh Nitrogen Nitrogen fixation NA Methanolinea tarda NOBI-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanolinea;species:Methanolinea tarda; 10775.932 3527.0155 2131.2033 1814.9355 50541845 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6849.5127 3685.0445 1862.6423 1862.6423 3809.2273 4071.9031 3448.6683 2432.7725 14161.5449 2756.1161 3076.0548 332331261 amyA Carbon Cycling Carbon degradation Starch Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 5397.571 375315870 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter bizzozeronii CCUG 35545 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 17175.8935 2306.9667 2306.9667 310826269 amyA Carbon Cycling Carbon degradation Starch Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 3930.8912 260222661 amyA Carbon Cycling Carbon degradation Starch Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 9469.1595 339290981 amyA Carbon Cycling Carbon degradation Starch Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 4103.1235 9814.9893 9454.0772 8467.7834 169640139 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 38445.7173 12895.9674 20904895 nifh Nitrogen Nitrogen fixation NA Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 4852.3945 328525936 amyA Carbon Cycling Carbon degradation Starch Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 3952.0862 6840.9165 5665.6759 4760.4527 6817.5936 5662.2673 363995004 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium massiliense CCUG 48898 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 5460.1959 4324.0214 2095.622 2095.622 3312.0475 6419.794 8753.6062 1979.5998 4319.8264 260574152 aoxb Metal Homeostasis Arsenic Detoxification Rhodobacter sp. SW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; 11663.8523 57864664 actin_Stramenopiles Other Phylogenetic NA Phytophthora palmivora superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 4062.2091 2638.3812 2638.3812 54016075 badh Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 11168.3829 325553952 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 15034.2653 116013370 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3962.6429 49400.2924 49400.2924 158306431 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 4607.5924 255957263 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4869.4191 3693.7261 2699.4964 397335003 chnb Organic Remediation Other Hydrocarbons NA Pseudomonas putida DOT-T1E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 4432.0205 284037766 amyA Carbon Cycling Carbon degradation Starch Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 3453.7418 4374.3591 5305.8679 14038.0889 3956.2081 10177.8913 299795517 vana Carbon Cycling Carbon degradation Vanillin/Lignin Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 44336.148 261857098 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3640.2702 4406.8674 4974.6092 333988259 mcra Carbon Cycling Methane Methanogenesis Methanobacterium sp. SWAN-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 3983.3792 5612.5787 2092.0469 28203340 dsra Sulfur sulfite reduction NA Clostridium tetani E88 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium tetani; 4410.8794 4897.5609 4897.5609 317470729 amyA Carbon Cycling Carbon degradation Starch Anaerostipes sp. 3_2_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Anaerostipes; 3887.6333 262039027 amyA Carbon Cycling Carbon degradation Starch Leptotrichia goodfellowii F0264 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia goodfellowii; 4425.5098 8650.2057 2863.5437 3473.5581 4286.5665 3050.4217 91187134 pula Carbon Cycling Carbon degradation Starch Psychroflexus torquis ATCC 700755 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Psychroflexus;species:Psychroflexus torquis; 7014.8422 5765.986 258520270 gdh Nitrogen Ammonification NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 3625.8988 3908.8818 1734.7867 374662548 ppx Phosphorus Polyphosphate degradation NA Saccharomonospora cyanea NA-134 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora cyanea; 3552.465 303273276 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 9132.0843 3191.9272 3191.9272 3156.9746 5263.9413 4031.5411 3421.6415 6056.2619 5766.4585 2307.6578 8681.3713 5502.9531 2357.7329 2965.1625 6837.3943 60475944 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4287.5163 4377.5785 4255.8266 5924.2457 41350248 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. Y2-1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 12769.1091 6262.7553 13236822 dsra Sulfur sulfite reduction NA Desulfotomaculum putei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 4608.4699 5762.4388 29982.5065 256784623 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces lividans TK24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces lividans; 4621.1569 15705.3948 8986.7042 8986.7042 9865.0185 4714.2631 6368.7298 7815.7907 9010.3663 7895.0115 5006.3115 8473.0082 3949.7958 8732.0746 60476237 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5488.9737 93568.5035 2510.2472 7842.9365 1911.5511 3732.3622 308752407 SoxA Sulfur Sulfur Oxidation NA Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 15942.9531 5071.7358 5605.5476 5605.5476 11727.3329 7114.8695 3727.7284 60476322 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5020.4051 4023.8067 6650.7122 3878.8322 5061.3497 4577.2719 5406.8792 2495.2646 5440.3081 4864.8932 2458.925 3285.4387 3183.1386 4559.7921 343179895 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactococcus garvieae ATCC 49156 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus garvieae; 3653.5364 347751483 amyA Carbon Cycling Carbon degradation Starch Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 6093.435 386714261 amyA Carbon Cycling Carbon degradation Starch Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 5508.8431 178925569 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5545.3243 20384793 GAPDH_Euglenozoa Other Phylogenetic NA Rhynchopus sp. ATCC 50231 superkingdom:Eukaryota;order:Diplonemida;genus:Rhynchopus; 4529.9977 9040.4578 7145.8964 8549.9439 4205.7263 8438.1264 4709.8226 8250.1315 2147.8905 4006.9401 3328.7786 324972276 heparinase Carbon Cycling Carbon degradation Heparin Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 4144.237 3258.2614 3258.2614 6499.7316 3699.5408 7371.4378 5262.9163 9295.4279 3848.4707 5813.1417 2083.2556 146305342 ppx Phosphorus Polyphosphate degradation NA Pseudomonas mendocina ymp superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 3900.4682 1833.3831 399159686 cbaa Organic Remediation Aromatics Chlorinated aromatics Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 6538.5637 145229657 nagg Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 28027.041 5127.4401 2506.2387 2506.2387 3645.9956 9081.5465 332683265 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 12755.5675 6146.4083 6146.4083 4854.2677 134051864 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 23469.9866 7685.852 5929.4533 226836039 gdh Nitrogen Ammonification NA Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 83384.8586 34420136 xylanase Carbon Cycling Carbon degradation Hemicellulose Trichoderma viride superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 3920.564 1756.6912 5705.6816 55978133 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3575.0817 74726.8421 23471.9689 34132.0099 18604.9158 223493.8835 13172.6716 47069.3252 23887.2254 44905.2376 71738.7456 15605.4231 31487.1689 20669.6738 327177914 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4292.5689 5162.7002 2561.6755 5992.8191 3864.273 5698.4125 223041608 napa Nitrogen Dissimilatory N reduction NA Actinobacillus minor 202 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 3531.1862 83316846 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3851.5105 6760.3324 10251.6345 307949836 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4801.9776 358065614 amyA Carbon Cycling Carbon degradation Starch Clostridium hathewayi WAL-18680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3989.0552 4139.245 4679.2924 5369.5523 254451803 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter arcticus; 6173.7578 4672.5262 5563.0511 5036.594 1755.4429 2715.3099 403647740 atzd Organic Remediation Herbicides related compound NA Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 3681.9341 262222143 pgk Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 4477.2684 7599.2459 7599.2459 4226.7191 5716.192 2610.3126 6458.2472 2309.9612 9434.5276 5163.6582 2199.3262 6649.6318 220062011 one_ring_23diox Organic Remediation Aromatics Other aromatics Arthrobacter sp. JDC-9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 34585.3134 66933.1683 381179732 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 3659.655 2952.815 3463.1856 53646.6621 5184.1336 197722611 ppx Phosphorus Polyphosphate degradation NA Streptomyces pristinaespiralis ATCC 25486 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces pristinaespiralis; 3431.9517 2988.9421 1819.4813 29654528 linb Organic Remediation Pesticides related compound NA Coxiella burnetii RSA 493 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Coxiellaceae;genus:Coxiella;species:Coxiella burnetii; 4650.138 2124.2188 2124.2188 7638.3115 12616.6048 3478.8511 257693900 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 72231.6197 374572466 amyA Carbon Cycling Carbon degradation Starch Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 5255.3655 5670.6496 3014.2525 3014.2525 254463365 FBPase Carbon Cycling Carbon fixation Calvin cycle Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3377.3814 226188188 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 3490.4339 5432.0751 2899.9215 291420201 chitinase Carbon Cycling Carbon degradation Chitin Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 5050.3401 126459672 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum calidifontis JCM 11548 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum calidifontis; 9177.9407 8012.8314 679723.2926 157285728 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3723.2587 2650.42 7203.6256 42405869 actin_Rhizaria Other Phylogenetic NA Minchinia chitonis superkingdom:Eukaryota;phylum:Haplosporidia;family:Haplosporidiidae;genus:Minchinia; 6131.5509 162954745 chnb Organic Remediation Other Hydrocarbons NA Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 4382.5698 4871.4844 5398.6319 5801.1713 4845.9308 2566.9309 4676.7687 7024.5596 1998.4401 146156700 chitinase Carbon Cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 6420.8254 7469.2493 331023518 amyA Carbon Cycling Carbon degradation Starch Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 8546.7261 5175.2323 1650.0137 149936622 ara Carbon Cycling Carbon degradation Hemicellulose Parabacteroides distasonis ATCC 8503 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides distasonis; 10048.6208 2522.3317 2522.3317 229468876 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 6442.1998 2659.2319 2659.2319 70930947 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3795.0503 315481477 icd Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 26633.2019 313901049 gdh Nitrogen Ammonification NA Clostridium sp. HGF2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 10565.5636 3359.3822 3359.3822 27657348 pcpe Organic Remediation Herbicides related compound NA Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aquamicrobium; 5929.6136 253986733 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylovorus glucosetrophus SIP3-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus;species:Methylovorus glucosotrophus; 5074.5461 18670.4237 381405933 cysJ Sulfur Reduction NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5549.7673 123967439 one_ring_12diox Organic Remediation Aromatics Other aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 3550.0251 311888698 terc Metal Homeostasis Tellurium Detoxification Rhodococcus equi 103S superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 21929.0995 26288.3385 316981054 nirk Nitrogen Denitrification NA uncultured proteobacterium superkingdom:Bacteria;phylum:Proteobacteria; 4588.9596 111073775 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3955.0404 6877.7966 6877.7966 3218.0615 271499676 arsc Metal Homeostasis Arsenic Detoxification Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 5872.1712 3702.9927 2834.1591 7205.8357 4056.3292 8622.4612 5090.1681 2549.6272 2855.0737 2676.486 383123629 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 4549.7377 7273.404 4972.4907 6236.8479 4449.6124 5289.1207 338756977 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 8302.9493 5783.4654 21821.4532 4455.0762 4455.0762 17296.3564 5819.3721 11657.8388 312134197 xylanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor owensensis OL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor owensensis; 5382.9965 7068.8971 2669.5756 5749.9884 303321428 protease_cysteine_fungi Carbon Cycling Carbon degradation protein Coccidioides posadasii C735 delta SOWgp superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides posadasii; 5053.265 3993.4195 4963.4875 2684.6464 387929238 arsc Metal Homeostasis Arsenic Detoxification Bacillus methanolicus PB1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 4397.1903 7047.6126 4639.1197 304407062 cda Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 10042.1344 45386201 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 3766.1865 12308.2056 3857.7295 3857.7295 9975.328 9289.5906 4991.115 5614.5205 4963.5078 2730.6622 4389.3501 2914.9311 4140.9462 3258.1986 292818024 tpha Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 3821.6297 7814.146 3500.6005 3157632 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 14318.737 302851781 actin_Viridiplantae Other Phylogenetic NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 9243.538 7011.7271 7011.7271 3913.1873 2671.5882 46409951 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19708.2892 3529.7088 1820.4505 1820.4505 73399.0933 4023.544 4348.1679 3453.1861 26567.8963 3957.3685 373477617 cysI Sulfur Other NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 3899.5256 4184.8899 5339.4315 422314157 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5753.0654 254784465 ppk Phosphorus Polyphosphate synthesis NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 4360.2134 2361.2136 373480503 urec Nitrogen Ammonification NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 6994.9878 4731.265 2052.8707 2052.8707 18198.766 33324771 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Prorocentrum minimum superkingdom:Eukaryota;class:Dinophyceae;order:Prorocentrales;family:Prorocentraceae;genus:Prorocentrum; 4499.6576 3771.7462 5562.4589 9725.7185 2186.4535 237809097 cysI Sulfur Other NA Tolumonas auensis DSM 9187 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Tolumonas;species:Tolumonas auensis; 4973.2364 217973286 phytase Phosphorus Phytic acid hydrolysis NA Shewanella baltica OS223 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 9437.3426 3319.0271 3319.0271 170027531 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4948.6527 5204.3628 2540.534 2845.2815 2330.4907 5409.4383 302556924 amyA Carbon Cycling Carbon degradation Starch Streptomyces griseoflavus Tu4000 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseoflavus; 10014.0896 2089.4242 2089.4242 5830.0392 3505.9919 384065483 xyla Carbon Cycling Carbon degradation Hemicellulose Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 3257.598 5538.238 333441058 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3911.4437 4218.7723 4143.7312 2081.0079 4428.6936 10503.5094 1913931 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5751.5688 88177248 rgh Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 4474.7125 2006.3299 2006.3299 7433.5 3950.8101 2526.7326 9610.6211 6218.4999 2280.3533 3591.7929 6247.1062 386347417 xyla Carbon Cycling Carbon degradation Hemicellulose Spirochaeta thermophila DSM 6578 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta thermophila; 3489.8237 4781.1451 8786.7478 4468.6898 2440.4223 6444.2457 13491875 xylanase Carbon Cycling Carbon degradation Hemicellulose Fusarium oxysporum f. sp. lycopersici superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium oxysporum; 3433.3059 327177908 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6269.9756 6174.9681 4677.8462 4818.2445 2630.6849 21217701 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 7035.0447 10537.1775 3653.0067 3653.0067 308070286 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4513.6161 91715426 exochitinase Carbon Cycling Carbon degradation Chitin Shewanella denitrificans OS217 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella denitrificans; 8899.8587 7099.9031 398067098 nitrilase Organic Remediation Aromatics Other aromatics Rhizobium sp. CF122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 4238.7733 2183.5709 2183.5709 4836.3488 3769.0743 3554.2643 5421.1867 5751.3831 8125.7757 3291.2409 5158.2942 2058.9572 3193.7215 3039.0643 2049.3936 5852.9385 194295012 phytase Phosphorus Phytic acid hydrolysis NA Selenomonas lacticifex superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 4317.9048 9358.0509 1948.0247 1948.0247 5060.667 9420.0353 2461.2568 2807.789 304939795 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 3677.8464 2348.1366 2348.1366 4133.0538 5563.6525 353541752 chitinase Carbon Cycling Carbon degradation Chitin Desulfitobacterium metallireducens DSM 15288 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium metallireducens; 38726.3927 389703398 tehb Metal Homeostasis Tellurium Detoxification Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3535.2183 6409.0441 344201376 cda Carbon Cycling Carbon degradation Starch Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 3766.0335 4220.9357 117923602 arsc Metal Homeostasis Arsenic Detoxification Magnetococcus sp. MC-1 superkingdom:Bacteria;phylum:Proteobacteria;genus:Magnetococcus; 4439.74 40313561 dsrB Sulfur sulfite reduction NA Pelotomaculum sp. MGP superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Pelotomaculum; 7214.5979 107856915 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4673.1092 5168.0889 1858.8993 3778.7986 375143674 amyA Carbon Cycling Carbon degradation Starch Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 4137.73 8209.5898 3999.7282 2343.107 118502657 ben_bcla virulence NA NA Pelobacter propionicus DSM 2379 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Pelobacteraceae;genus:Pelobacter;species:Pelobacter propionicus; 8036.3433 5612.9868 295314228 assa Organic Remediation Other Hydrocarbons NA uncultured delta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 61131.3353 11486.0986 15147.8108 3851.7121 237748395 phytase Phosphorus Phytic acid hydrolysis NA Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 6028.3189 339279409 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 6413.7501 1939.2658 1939.2658 3484.833 56424.8248 10089.5804 3950.2412 303231913 ppx Phosphorus Polyphosphate degradation NA Veillonella atypica ACS-049-V-Sch6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella atypica; 5400.9858 4522.9477 4522.9477 390526389 chitinase Carbon Cycling Carbon degradation Chitin Desulfitobacterium dehalogenans ATCC 51507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium dehalogenans; 4179.6868 2649.6194 319902020 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 6541.1487 89317672 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium flavescens PYR-GCK superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 8177.0902 291276579 gdh Nitrogen Ammonification NA Helicobacter mustelae 12198 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter mustelae; 70472.1689 26562.0304 7948.0858 7066.131 366090255 amyA Carbon Cycling Carbon degradation Starch Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 7416.5957 110340408 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 11586.2834 6634.0286 6634.0286 6734.6089 262014356 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylellina haptospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylellina; 4205.2369 295689143 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 6921.795 3866.756 3866.756 298549685 amyA Carbon Cycling Carbon degradation Starch Geobacillus kaustophilus HTA426 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus kaustophilus; 32920.9518 75907649 amyA Carbon Cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 6652.4966 298576150 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 10797.9173 460058.6825 63470.282 124022519 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus str. MIT 9303 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 3602.2598 6921.6951 1676.1174 14830.7389 4295.9666 291311079 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 4769.5618 146302282 endochitinase Carbon Cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 8944.1967 5336.6542 11800.9656 4971.0812 332305993 xylanase Carbon Cycling Carbon degradation Hemicellulose Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 8362.5141 7832.2727 7475.646 7475.646 150956671 arsc Metal Homeostasis Arsenic Detoxification Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 5606.6984 6874.5506 5072.8132 2537.5605 2734.7599 306517760 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15124.5282 218710341 amyA Carbon Cycling Carbon degradation Starch Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 3505.9477 2000.5382 298570495 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Symbiodinium sp. clade B superkingdom:Eukaryota;class:Dinophyceae;order:Suessiales;family:Symbiodiniaceae;genus:Symbiodinium; 3796.4689 227197988 amyA Carbon Cycling Carbon degradation Starch Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 3825.707 2530.3366 3864.6374 2966.3324 2937.8477 12862420 catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. CA10 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5659.7727 17138.6606 390946387 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 15163.7186 7392.8533 10698.5022 318039016 cysJ Sulfur Reduction NA Candidatus Blochmannia vafer str. BVAF superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Blochmannia;species:Candidatus Blochmannia vafer; 73068.9921 6128.7718 365227713 amyA Carbon Cycling Carbon degradation Starch Staphylococcus pettenkoferi VCU012 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pettenkoferi; 4158.2464 16313.7246 84452303 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 12681.4884 109452480 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5209.5624 376260282 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9111.1998 5161.9687 291424268 phn Organic Remediation Herbicides related compound NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 4891.2356 2302.0759 5353.9303 302507294 phospholipase_B_fungi virulence degradation NA Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 6902.4681 9884.9795 260414970 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Silicibacter lacuscaerulensis ITI-1157 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria lacuscaerulensis; 3928.8554 5213.5757 61112.6313 51856.6469 372454112 cysI Sulfur Other NA Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3834.7816 4848.8987 4278.3094 3657.2526 2821.2626 330995022 arsc Metal Homeostasis Arsenic Detoxification Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 3587.3176 6082.8951 6758.9896 2361.8206 4256.1641 151302141 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 5701.5634 238489195 chnc Organic Remediation Other Hydrocarbons NA Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 6783.7982 7542.1502 4435.2021 4105.2732 11493.7769 3194.6453 8026.0556 3578.9075 6694.4306 5873.8073 2895.6931 5542.4472 293394893 xylanase Carbon Cycling Carbon degradation Hemicellulose Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 3387.1815 3064.7658 4770.0865 4205.748 5107.9357 196482300 tfda Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium superkingdom:Bacteria; 13726.1817 422314047 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10351.2698 7429.2527 7429.2527 13454.7213 9776.0796 2081.3657 25903.8392 2788.1016 46917292 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5077.0203 6389.9622 5297.5206 24421465 nirs Nitrogen Denitrification NA uncultured organism 7696.8152 302666070 cellobiase Carbon Cycling Carbon degradation Cellulose Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 4271.2545 2488.1907 2488.1907 86163647 amyA Carbon Cycling Carbon degradation Starch Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 39729.9462 7212.1088 3647.0492 386851.4773 340617231 aln Organic Remediation Others NA Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 3944.0648 3616.4017 3367.0195 10061.1072 3556.7075 1761.1479 3318.106 355335084 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 12081.7545 5401.3943 2329.4744 116181820 glx Carbon Cycling Carbon degradation Lignin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 8088.6636 2595.1501 42014.4771 332683949 rgl Carbon Cycling Carbon degradation Pectin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 5257.3101 5154.9248 5154.9248 8305.5171 7472.8479 3175.7313 2311.3569 380692190 mcra Carbon Cycling Methane Methanogenesis Methanothermobacter wolfeii superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 9344.4459 239626931 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridiales bacterium 1_7_47_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 5062.1453 359761701 narg Nitrogen Denitrification NA Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 4618.1924 119716382 xylj Organic Remediation Aromatics BTEX and related aromatics Nocardioides sp. JS614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Nocardioides; 3699.2914 302412114 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 3565.994 7194.2225 381189017 ppx Phosphorus Polyphosphate degradation NA Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 4565.541 2661.159 2661.159 186467555 mer Metal Homeostasis Mercury Detoxification Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6985.9206 3753.2188 167887781 mer Metal Homeostasis Mercury Detoxification Pseudomonas sp. AW54a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5713.1431 332352096 arsc Metal Homeostasis Arsenic Detoxification Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 3790.7683 5919.476 5919.476 5113.1806 78574.0512 2632.8726 3321.5154 3651.3049 221133994 amyA Carbon Cycling Carbon degradation Starch Glaciecola sp. HTCC2999 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 5800.2139 13576.0646 262273456 FBPase Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 3817.5497 374608689 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 7956.5298 1934.7658 256672287 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 7219.2868 2714.4513 2714.4513 6334.9818 7201.7175 1972158.7821 2421.4566 3692.5588 407288507 phn Organic Remediation Herbicides related compound NA Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 4505.2502 121714897 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7696.6482 3082.0698 281336116 linc Organic Remediation Pesticides related compound NA Staphylococcus sp. 693-7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 42180.9792 290968995 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Megasphaera genomosp. type_1 str. 28L superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 12102.2082 1810.6802 1810.6802 84778391 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3893.1055 85836576 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4382.1427 4609.6786 2361.502 6805.9695 2142.3239 46140095 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 71422.3313 385329762 one_ring_23diox Organic Remediation Aromatics Other aromatics Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 4159.3136 463809.6525 3956.8875 9138.8918 3337.4829 5242.7124 2928.8422 6912.768 4508.6278 343494988 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 4509.1627 2312.2758 5812.5906 3571.482 4153.4209 1954.4771 2674.7974 110819055 alkb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5086.268 46307963 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 27675.4302 10485.3236 10485.3236 299604.8137 101898.031 3670.6785 11521.9147 290467841 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 3799.0683 4711.1407 2643.4308 4935.6015 67920776 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 9525.7583 5661.2252 5661.2252 22658.9384 13537.2941 3133.8362 227356745 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Proteus mirabilis ATCC 29906 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 3887.8015 156108234 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 3966.9904 6571.5928 2894.0165 170725771 xylg Organic Remediation Aromatics Aromatic carboxylic acid Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 12004.9339 10166.7696 10166.7696 3717.8673 223714274 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3819.0462 4503.4623 6540.9886 4697.4657 12739.365 291552072 ppx Phosphorus Polyphosphate degradation NA Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 6590.854 5694.8243 12691.1563 113528285 soxY Sulfur Sulfur Oxidation NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 11750.4147 4368.3981 4368.3981 6411.4617 3908.5667 365851417 terc Metal Homeostasis Tellurium Detoxification Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 4313.0797 27753.02 87198562 one_ring_12diox Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 6291.586 2621.9691 56809441 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3382.4697 2880.9304 7822.3923 6694.6759 332372338 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3816.3669 4168.4095 315449122 pme Carbon Cycling Carbon degradation Pectin Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 4684.4533 3952.2306 403401823 catechol Organic Remediation Aromatics Other aromatics Gordonia namibiensis NBRC 108229 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia namibiensis; 3389.3197 3629.0183 4625.2081 2035.7453 356960670 dmdA Sulfur DMSP degradation NA gamma proteobacterium SCGC AAA001-B15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6502.887 3219.0847 385883151 amyA Carbon Cycling Carbon degradation Starch Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 3845.8908 4443.8295 99083143 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6305.3429 6401.703 2296.9942 2928.9667 295064381 amyA Carbon Cycling Carbon degradation Starch Lactobacillus amylolyticus DSM 11664 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylolyticus; 3516.6056 5428.3551 4969.6403 374996311 rd Organic Remediation Chlorinated solvents NA Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 3599.9107 400333673 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 6736.0247 9056.6605 8946.6257 2608.8117 6835.1692 2589.6536 27150.4716 3584.3509 383821387 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium phlei RIVM601174 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium phlei; 3870.6458 8195.4386 5256.943 2686.5024 5000.0209 375056253 phn Organic Remediation Herbicides related compound NA Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 3447.2688 310798170 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 5152.5482 118765310 pula Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis ATCC 15703 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 24101.9099 359428374 TIM Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. NBRC 100985 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4787.0626 365264699 urec Nitrogen Ammonification NA Actinomyces sp. oral taxon 849 str. F0330 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 849; 5711.314 43030.9107 15614424 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; 7717.9907 6580.6634 299754559 endochitinase Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 4544.3756 4704.473 4704.473 3340.7908 215462767 phenol_oxidase Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 30216.0623 149782951 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3459.3411 62196386 urec Nitrogen Ammonification NA Brucella abortus biovar 1 str. 9-941 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella abortus; 7848.1942 4785.5529 10019.0636 2092.5998 2784.5032 2355.6971 7324.7433 76667520 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 10758.2574 308914306 cellobiase Carbon Cycling Carbon degradation Cellulose Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 4086.4424 7233.0468 2509.7055 2097.7891 4631.5613 5540.0743 1875.7966 319413982 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 15377.0881 7146.0976 4966.1837 2751.5157 13498.9137 4962.8778 5767.6325 5327.2311 3392.7456 5019754 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5538.2647 4460.051 164455834 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 70790.3559 8886.5677 356891711 phenol_oxidase Carbon Cycling Carbon degradation Lignin Eremothecium cymbalariae DBVPG#7215 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium cymbalariae; 5337.7736 76577448 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10054.9822 4030.5347 55275102 mer Metal Homeostasis Mercury Detoxification Pantoea agglomerans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 4543.6154 2722.5191 2303.8455 8783.6764 7455.4757 403068713 B_lactamase_A Virulence Antibiotic resistance Degradation Oceanobacillus sp. Ndiop superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus; 4138.6727 2236.9891 325980903 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 3720.7382 3180.1543 3304.1808 4856.4568 218779418 APS_AprB Sulfur adenylylsulfate reductase NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 3407.2291 6523.7866 261074.6621 386925339 cueo Metal Homeostasis Copper Detoxification Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 3856.3497 21605.4119 6140.7656 7840.6425 62512308 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5274.3719 4914.0821 4914.0821 6106.9376 49610368 tehb Metal Homeostasis Tellurium Detoxification Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 3713.1122 4238.6729 4571.0951 9918.94 2361.6613 5332.2974 261857075 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3249.7752 2475.8766 261407564 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2988.6877 3661.7071 237669490 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium butyricum E4 str. BoNT E BL5262 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium butyricum; 4507.461 260769681 amyA Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 6107.1568 365332661 arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. STM 3809 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 18481.2827 2024.897 2976.7902 10129.9604 149188429 amyA Carbon Cycling Carbon degradation Starch Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 7559.2295 116065271 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6751.6657 159901317 xylanase Carbon Cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 3831.6796 2955.8489 1987.6006 54778261 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5833.3554 109639567 dmsa Organic Remediation Others NA Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 5366.5692 3297.548 2241.8724 2742.2124 333111740 amyA Carbon Cycling Carbon degradation Starch Thermoanaerobacterium xylanolyticum LX-11 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium xylanolyticum; 4504.4674 307700197 amyA Carbon Cycling Carbon degradation Starch Mobiluncus mulieris FB024-16 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 11625.1179 2488.0534 2488.0534 3963.4304 119478299 chnb Organic Remediation Other Hydrocarbons NA marine gamma proteobacterium HTCC2143 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6089.5678 8362.6778 296281056 exoglucanase Carbon Cycling Carbon degradation Cellulose Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 6645.8903 295064316 ppx Phosphorus Polyphosphate degradation NA Lactobacillus amylolyticus DSM 11664 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylolyticus; 3871.4712 384566005 dmdA Sulfur DMSP degradation NA Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 11814.8732 4402.6358 2760.6738 3085.1341 179515.1887 148474842 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5831.8278 6430.462 3048.9925 8355.2395 63833.3115 5005.2627 2970.3334 340841823 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 7693.3413 11085.9485 26494.2135 365425315 fccab Sulfur Sulfide Oxidation NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 15211.2492 5380.8424 5380.8424 26664.746 6863.0537 2755.8137 4390.2331 16042.5148 5033.2632 8559.3891 403657086 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 11790.8247 8109.9981 4327.61 2783.401 2360.6283 7174.7246 158632532 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 33078.4328 312922916 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3411.9989 295799339 cysJ Sulfur Reduction NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 25858.2797 3503.426 5038.2784 319956534 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 4625.1337 3064.028 4864.586 2997.7642 2115.9368 2639.9135 170016433 xyla Carbon Cycling Carbon degradation Hemicellulose Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7421.6019 153813005 ppk Phosphorus Polyphosphate synthesis NA Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 4869.039 154156504 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 5385.8307 121535025 terc Metal Homeostasis Tellurium Detoxification Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 6942.1184 173628.9277 110826492 aps_apra Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8488.2384 5140.9929 160937778 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 3471.829 6965.5822 6125.774 3108.6424 2359.6634 7187.9472 5079.933 193088722 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Chloroherpeton thalassium ATCC 35110 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chloroherpeton;species:Chloroherpeton thalassium; 3548.9232 2092.0604 335357352 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus animalis KCTC 3501 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus animalis; 12489.5489 2553.6696 163760455 nifh Nitrogen Nitrogen fixation NA Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 7315.8655 2075.8947 24060.3667 4104.4321 108756993 exochitinase Carbon Cycling Carbon degradation Chitin Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 9119.4516 11278.1863 5858.6862 4021.6051 31594.4081 3116.9603 8142.5992 5034.2754 7205.9355 10168.5722 3881.622 7487.9395 2371.0323 167656503 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 4269.2139 371651169 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 56400.9011 304312809 FBPase Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5693.5014 32447371 nrfa Nitrogen Dissimilatory N reduction NA Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 21343.4219 3490.2089 325666825 ppx Phosphorus Polyphosphate degradation NA Yersinia enterocolitica subsp. palearctica 105.5R(r) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 5677.4648 298576645 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 18867.2446 10057.9393 2695.2117 2180.5612 4559.0653 2568.2032 2570.8809 157679399 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3422.3063 75825028 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae O395 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 24156.857 13829.4481 7157.1659 323366334 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5710.0769 77540.2032 359309111 cutinase Carbon Cycling Carbon degradation Cutin Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 6049.4853 339610987 RgaE Carbon Cycling Carbon degradation Pectin Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 3561.0574 406866207 pcpe Organic Remediation Herbicides related compound NA Marssonina brunnea f. sp. 'multigermtubi' MB_m1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Dermateaceae;genus:Marssonina;species:Marssonina brunnea; 4712.0154 189092779 lactase_fungi Carbon Cycling Carbon degradation Lactose Penicillium expansum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 3678.2797 1703.6997 124260874 chnb Organic Remediation Other Hydrocarbons NA Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 8678.8773 26311.8274 4158.0014 7834.1715 337750420 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4261.102 29799.9536 2371.8273 8254.8525 32562914 bphb Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. JF8 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5638.6166 283437565 cysI Sulfur Other NA Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 3633.3807 3253.2513 9955.3588 301640410 ppx Phosphorus Polyphosphate degradation NA Desulfarculus baarsii DSM 2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfarculales;family:Desulfarculaceae;genus:Desulfarculus;species:Desulfarculus baarsii; 6719.5881 5057.2275 2640.7817 3549.1704 2385.4849 3044.426 348028835 arylest Organic Remediation Aromatics Other aromatics Glaciecola nitratireducens FR1064 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola nitratireducens; 4171.5865 332377290 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7539.6938 209965110 tktA Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 3408.279 7273.0012 3817.5572 2406.2319 164456022 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6800.9154 5741.3374 3762.026 4414.912 9718.1211 1944.8785 3602.3506 3214.18 2933.3239 209537439 phn Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 5701.0214 16100.4264 16100.4264 6236.8581 336235696 urec Nitrogen Ammonification NA Geobacillus thermoglucosidasius C56-YS93 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoglucosidasius; 5069.3575 145522193 actin_ciliophora Other Phylogenetic NA Paramecium tetraurelia strain d4-2 superkingdom:Eukaryota;class:Oligohymenophorea;order:Peniculida;family:Parameciidae;genus:Paramecium;species:Paramecium tetraurelia; 3620.9214 63029779 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3186.8544 60100841 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3725.0842 146300321 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 4438.2708 2115.0677 2115.0677 2967.6107 2640.4373 6446.3804 338733334 amyA Carbon Cycling Carbon degradation Starch Simkania negevensis Z superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 7125.8927 296014990 ppx Phosphorus Polyphosphate degradation NA Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 3840.8745 238726551 pme Carbon Cycling Carbon degradation Pectin Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 35808.9606 149910017 exochitinase Carbon Cycling Carbon degradation Chitin Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 9875.0716 10654.7686 326329244 chitinase Carbon Cycling Carbon degradation Chitin Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 4298.9173 4612.5424 284051841 tktA Carbon Cycling Carbon fixation Calvin cycle Arthrospira platensis str. Paraca superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 4456.5691 71491384 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 3435.7708 255298420 alkk Organic Remediation Others NA Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 10391.1001 374703264 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 28608.408 398838004 bend Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM102 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7350.9168 4300.2845 2939.8931 261855526 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Halothiobacillus neapolitanus c2 4929.2323 10174.4366 334897697 mer Metal Homeostasis Mercury Detoxification Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 4761.3635 4679.354 14964.6336 5674.2824 2481.5673 2154.7403 86555640 ppk Phosphorus Polyphosphate synthesis NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 954633.7544 300718080 narg Nitrogen Denitrification NA Erwinia billingiae Eb661 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia billingiae; 8375.018 55229415 urec Nitrogen Ammonification NA Haloarcula marismortui ATCC 43049 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula marismortui; 4038.8378 3609.0341 3609.0341 9075.445 6263.4417 3345.8332 119719501 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 3480.2001 2269.7614 1726.2277 2731.2272 409028457 alkb Organic Remediation Other Hydrocarbons NA Simiduia agarivorans SA1 = DSM 21679 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Simiduia;species:Simiduia agarivorans; 3912.4202 6115.3846 7806.4061 4766.4191 5166.7927 5182.8326 3367751 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 4309.6454 4901.3096 3809.3847 6080.4535 17479.745 2168.0795 3760.6636 1962.4725 6899.1771 15796.8472 11226475 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3231.6103 3054.7668 3054.7668 4642.7676 51872759 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 102646.2404 2822.7741 2822.7741 2581.7453 226346738 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3663.3184 126348649 endochitinase Carbon Cycling Carbon degradation Chitin Streptomyces ambofaciens ATCC 23877 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces ambofaciens; 3846.0097 396931190 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3097.7207 2601.8063 5895.2956 3831.2232 5987.2454 2503.3201 2510.1207 2787.7899 10832.0024 2085.8611 2562.7472 3023.6137 2178.8106 13346.3917 144905736 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8546.5372 350275181 dsra Sulfur sulfite reduction NA Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 14450.2425 2378.4752 2378.4752 82194.1325 4312.082 2314.206 343918955 rubisco Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 3331.0022 357015264 inulinase Carbon Cycling Carbon degradation Inulin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 7967.5414 76667545 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4918.7144 3728.82 3728.82 3604.0703 2107.4164 1933.8044 5244.8214 388062146 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis 00703C2mash superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 4377.6944 119524173 amyA Carbon Cycling Carbon degradation Starch Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 5642.7534 5431.3964 2380.9603 2380.9603 8084.467 294497774 dehh109 Organic Remediation Chlorinated solvents NA Bacillus megaterium QM B1551 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 9871.2514 227955558 cox1_ciliophora Other Phylogenetic NA Platyophrya sp. COL-Platyo-spec-01 superkingdom:Eukaryota;class:Colpodea;order:Cyrtolophosidida;family:Platyophryidae;genus:Platyophrya; 3997.8472 73534177 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4853.9384 159900848 amyA Carbon Cycling Carbon degradation Starch Herpetosiphon aurantiacus DSM 785 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 6050.5132 148756056 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6057.074 8168.146 6941.9323 394452805 linb Organic Remediation Pesticides related compound NA Pontibacter sp. BAB1700 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Pontibacter; 3491.2985 4249.4412 8916.8929 1979.6104 209486836 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15277.0554 7079.4812 2941.0086 133912309 mdld Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 9459.7465 238917122 amyA Carbon Cycling Carbon degradation Starch Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 9675.0315 17649.3945 145603811 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6860.1575 44694.0487 44694.0487 6342.5161 2342.9132 5902.1013 2107.6489 225720749 amyA Carbon Cycling Carbon degradation Starch Streptococcus pneumoniae 70585 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 9623.9371 332270601 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3491.9905 2989.5261 10236.2934 1639.2663 2895.7347 328809624 urec Nitrogen Ammonification NA Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 4104.3271 156056282 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 3941.9883 6623.9424 308057778 amyA Carbon Cycling Carbon degradation Starch Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 3947.1798 5403.1755 2064.0996 307153503 nifh Nitrogen Nitrogen fixation NA Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 5624.4832 5683.3254 5683.3254 85695980 ppx Phosphorus Polyphosphate degradation NA Nitrobacter sp. Nb-311A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 4384.6334 3224.7782 6496.9879 1678.8475 261857196 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7272.6635 3735.2692 3735.2692 7287.3764 4213.9385 4834.6837 9447.8543 4549.414 7036.3536 2675.2528 3002.3998 3863.0356 383188625 cysJ Sulfur Reduction NA Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 4225.9216 6400.49 2340.9972 238505306 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 3964.3985 24077.5565 328840799 ppx Phosphorus Polyphosphate degradation NA Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 4270.8527 2078.5576 371935779 atza Organic Remediation Herbicides related compound NA Dialister succinatiphilus YIT 11850 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister succinatiphilus; 19874.6269 5406.3397 5345.9735 196177287 PRI Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 3651.2238 3940.0241 3867.4623 1569.1241 302482926 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella disiens FB035-09AN superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella disiens; 8770.3973 383801592 amyA Carbon Cycling Carbon degradation Starch Ignavibacterium album JCM 16511 superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 4595.2282 59044733 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 8427.4504 4688.5508 3029.4766 385233679 ppx Phosphorus Polyphosphate degradation NA Ketogulonigenium vulgarum WSH-001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ketogulonicigenium;species:Ketogulonicigenium vulgare; 11934.6903 183982390 amyA Carbon Cycling Carbon degradation Starch Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 18568.4783 57788.5686 6539.6876 4278.3538 6892.4363 3095.2048 7505.959 12270.7514 2103.4084 3071.2058 3354.0325 2386.3473 257482963 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. tabaci str. ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 4470.7186 50034.4048 50034.4048 7401.3805 7148.0163 5164.5424 6048.1639 225039946 ppk Phosphorus Polyphosphate synthesis NA Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Blautia;species:Blautia hydrogenotrophica; 6863.9501 171988795 terc Metal Homeostasis Tellurium Detoxification Exiguobacterium sibiricum 255-15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium;species:Exiguobacterium sibiricum; 14477.1467 116181508 glucoamylase Carbon Cycling Carbon degradation Starch Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 5104.4255 359305506 arsc Metal Homeostasis Arsenic Detoxification Arthrobacter globiformis NBRC 12137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter globiformis; 4501.498 2535.1655 115367842 chitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4674.5677 4705.9289 1950.4229 3901.2321 326197649 bphd Organic Remediation Aromatics Polycyclic aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 7464.9193 185327.4307 6019.9533 383620376 nosz Nitrogen Denitrification NA Halobiforma lacisalsi AJ5 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobiforma;species:Halobiforma lacisalsi; 4568.6743 6459.9355 2478.1595 37954338 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 29876.4604 2639.8461 150261190 beta_agarase Carbon Cycling Carbon degradation Agar Janthinobacterium sp. SY12 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 15214.1288 349701600 tktA Carbon Cycling Carbon fixation Calvin cycle Gluconacetobacter europaeus LMG 18494 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter europaeus; 6622.1993 199318.6567 4126.9709 4126.9709 11804.7494 2517.8969 212680082 dmsa Organic Remediation Others NA Providencia rustigianii DSM 4541 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rustigianii; 3604.7629 212704711 APS_AprB Sulfur adenylylsulfate reductase NA Desulfovibrio piger ATCC 29098 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio piger; 5190.2961 160895023 bphF1 Organic Remediation Aromatics Polycyclic aromatics Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 493856.5628 4479.9364 302389129 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 8751.1215 407701181 nitro Organic Remediation Others NA Alteromonas macleodii str. 'Black Sea 11' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 3773.8241 87281137 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 84662.9637 10006.0517 10006.0517 2112.5391 57168491 ppx Phosphorus Polyphosphate degradation NA Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 3580.5738 5734.9533 2709.8361 3879.1509 16262575 gdh Nitrogen Ammonification NA Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 3878.0367 365420181 alkk Organic Remediation Others NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 18230.0662 6420.152 372223844 amyA Carbon Cycling Carbon degradation Starch Mesoflavibacter zeaxanthinifaciens S86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Mesoflavibacter;species:Mesoflavibacter zeaxanthinifaciens; 16862.8311 4044.0508 4043.7943 385654577 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 258422.6297 375255623 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Tannerella forsythia ATCC 43037 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella;species:Tannerella forsythia; 3350.7237 317969807 Sir Sulfur sulfite reduction NA Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5053.8181 8413.6171 359687775 endoglucanase Carbon Cycling Carbon degradation Cellulose Leptospira licerasiae serovar Varillal str. MMD0835 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 4333.0836 46545.1722 78194587 pchcf Organic Remediation Aromatics BTEX and related aromatics Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 5107.0046 4586.4679 5191.55 358238704 cdh Carbon Cycling Carbon degradation Terpenes Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 3981.6529 16309.3751 9708.4811 5474.4456 3766.4816 386275078 phytase Phosphorus Phytic acid hydrolysis NA Methylophaga sp. JAM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 35520.9171 336305313 amyA Carbon Cycling Carbon degradation Starch Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 6158.4486 2436.0899 90440670 xyla Carbon Cycling Carbon degradation Hemicellulose Photobacterium angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 3131.687 2043.6403 2043.6403 409441152 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 4217.3994 7498.4637 374619813 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11944.3841 333480067 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Amycolicicoccus subflavus DQS3-9A1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Amycolicicoccus;species:Amycolicicoccus subflavus; 10866.2236 13170.2202 39573955 amyx Carbon Cycling Carbon degradation Starch Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 3159.5794 4736.829 387928855 chitinase Carbon Cycling Carbon degradation Chitin Bacillus methanolicus PB1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus methanolicus; 3674.2531 5111.9592 322119612 ppx Phosphorus Polyphosphate degradation NA Actinobacillus ureae ATCC 25976 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus ureae; 5425.9335 320105747 glucoamylase Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 101506.5776 46435666 Sir Sulfur sulfite reduction NA Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 31211.2976 296121542 xyla Carbon Cycling Carbon degradation Hemicellulose Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 5440.2038 5241.6828 62426149 pcag Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium linens; 3473.5385 223714358 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4292.936 3699.9954 14782.839 49529989 cysJ Sulfur Reduction NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3318.752 110823845 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 4847.8984 4151.1294 4503.2198 3241.0081 9922.9647 5427.3981 2013.2738 342818259 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 132560.3362 260420900 alkb Organic Remediation Other Hydrocarbons NA Citreicella sp. SE45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 3401.8607 8993.1463 2198.2285 115284366 vana Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 5446.9389 2479.9369 8418.4078 5717.6616 320547304 cpna Organic Remediation Other Hydrocarbons NA Streptococcus equinus ATCC 9812 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 7716.2919 212171472 alkb Organic Remediation Other Hydrocarbons NA Kordiimonas gwangyangensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Kordiimonadales;genus:Kordiimonas; 8522.4605 345111180 amyA Carbon Cycling Carbon degradation Starch Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 4807.1828 159173119 cysJ Sulfur Reduction NA Vibrio sp. AND4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4126.3608 11816.7645 302195920 amyA Carbon Cycling Carbon degradation Starch Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 3847.3273 3692.503 7427.7261 2575.2351 163734819 vana Carbon Cycling Carbon degradation Vanillin/Lignin Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 4152.157 218564194 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8352.1021 2717.3267 2717.3267 8666.9136 7516.6341 12201.2473 14016.8855 57392.7559 3868.9495 15209405 ppk Phosphorus Polyphosphate synthesis NA Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 4083.8939 229793070 atza Organic Remediation Herbicides related compound NA Shuttleworthia satelles DSM 14600 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Shuttleworthia;species:Shuttleworthia satelles; 3293.2171 356578759 mannanase Carbon Cycling Carbon degradation Hemicellulose uncultured microorganism 3104.3696 4853.4451 6127.1477 2881.4648 10633.8382 7107.635 1963.0017 114307743 pula Carbon Cycling Carbon degradation Starch Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 3319.4267 3344.8405 1821.7564 2678.1751 284812481 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7825.5283 3533.0759 16419.4207 153871798 amyA Carbon Cycling Carbon degradation Starch Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 3606.4716 3793.5957 2466.2743 2984.8653 346981053 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria ivanovii subsp. ivanovii PAM 55 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 7315.1875 332377322 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 3198.3677 4589.2364 358003932 ara Carbon Cycling Carbon degradation Hemicellulose Agrobacterium tumefaciens 5A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 6662.6212 169793656 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 62232.0316 260221306 amyA Carbon Cycling Carbon degradation Starch Curvibacter putative symbiont of Hydra magnipapillata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Curvibacter; 5783.1091 2178.6557 88947825 ppx Phosphorus Polyphosphate degradation NA Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 18617.706 26715.0546 310790415 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 3772.2457 3542.8677 3591.2357 3451.64 2731.3726 116092325 ppx Phosphorus Polyphosphate degradation NA Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 5110.0168 374303286 arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 6417.4936 6054.1165 21523.9076 158514506 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3467.9057 3387.6947 13249529 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9449.1164 3294.7003 14669489 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5459.0324 108805950 amyA Carbon Cycling Carbon degradation Starch Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 4746.6871 5285.5585 2825.993 2825.993 22000.7079 7582.7644 13995.0229 381161841 dmdA Sulfur DMSP degradation NA Saccharomonospora azurea NA-128 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora azurea; 57034.4449 7969.5513 55978128 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 27772.4899 8895.2915 261249769 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 25394.6418 5373.4501 5135.159 86605334 narb Nitrogen Assimilatory N reduction NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 7985.2056 5986.9733 4915.8638 9924.9545 6491.7906 7599.615 3155.3476 2340.0925 291514092 chitinase Carbon Cycling Carbon degradation Chitin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 3783.7372 88806170 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 4752.7955 20278751 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3476.0919 83404792 nirs Nitrogen Denitrification NA uncultured organism 4877.6285 3132.6558 3132.6558 6114.379 4174.2232 2335.7583 2753.1294 8335.1822 5666.6494 6410.5474 1665.8901 2518.6957 3597.0593 2301.2254 206890942 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 3537.326 262376352 arsc Metal Homeostasis Arsenic Detoxification Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 56827.3445 10304.713 15606.7673 1354283 xylg Organic Remediation Aromatics Aromatic carboxylic acid superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 4625.4695 5572.8459 27547.2624 5343.7593 2750.3415 2500.4275 353546085 dsrB Sulfur sulfite reduction NA Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 3779.7322 323530592 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3312.1588 7424.7498 2371.9553 5794.9876 74038274 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3190.449 6696.3242 3796.3502 2182.1451 7612.8949 6277.9256 4847.3634 1932.1701 2715.6534 3986.147 1952.7574 5899.902 77378483 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 30824.3119 5134.2248 2378.1609 46409915 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11370.4451 392951302 terc Metal Homeostasis Tellurium Detoxification Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 3413.9056 5159.8928 325060639 cysI Sulfur Other NA Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 3449.9281 17871.7583 2722.7893 16283.6214 98960760 phenol_oxidase Carbon Cycling Carbon degradation Lignin Morchella conica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Morchellaceae;genus:Morchella; 3460.1239 4509.1702 237684114 pme Carbon Cycling Carbon degradation Pectin Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 3659.7396 37360775 endochitinase Carbon Cycling Carbon degradation Chitin Nocardiopsis sp. F96 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis; 23616.4851 336316058 cda Carbon Cycling Carbon degradation Starch Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 5171.8309 12680.9769 26799.0766 3758.1294 14153.9169 222149810 cellobiase Carbon Cycling Carbon degradation Cellulose Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 5401.9217 221562601 ben_bcla virulence NA NA Geobacter daltonii FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter daltonii; 4818.1528 26520.4242 7590.6651 80563490 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5680.9649 59710871 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 5074.1342 331022823 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 3581.1115 3089.0823 11946.5605 3321.5118 91686229 cyma Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 3798.8627 4989.1324 2519.7157 2475.0806 3103.5053 387938115 amyA Carbon Cycling Carbon degradation Starch Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8087.3243 4711.6725 7143.4767 5024.5226 186466601 FBPase Carbon Cycling Carbon fixation Calvin cycle Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 6270.3721 2312374.0016 7107.6249 70726938 terc Metal Homeostasis Tellurium Detoxification Staphylococcus haemolyticus JCSC1435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus haemolyticus; 3108.1669 5037.2153 371926901 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5036.763 14825.1584 112802240 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 3837.2014 315169665 B_lactamase_A Virulence Antibiotic resistance Degradation Enterococcus faecalis TX1342 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecalis; 5879.1485 338734092 cysJ Sulfur Reduction NA Simkania negevensis Z superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Simkaniaceae;genus:Simkania;species:Simkania negevensis; 7878.8387 373480602 urec Nitrogen Ammonification NA Singulisphaera acidiphila DSM 18658 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Singulisphaera;species:Singulisphaera acidiphila; 6223.6328 3985.2839 8560.5803 2185.3168 3667.721 212536853 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 6711.0068 323128113 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 3991.2966 4113.2537 20567.2282 301109683 pectin_lyase_Oomycetes Carbon Cycling Carbon degradation Pectin Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 3231.3355 86146914 amyA Carbon Cycling Carbon degradation Starch Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 54154.9794 4130.6439 326801334 cellobiase Carbon Cycling Carbon degradation Cellulose Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 16302.9518 4423.1383 2040.5918 2040.5918 254489852 ppk Phosphorus Polyphosphate synthesis NA Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 2959.7867 377815371 cysJ Sulfur Reduction NA Pantoea stewartii subsp. stewartii DC283 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea stewartii; 741521.4343 116061978 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7832.1642 5398.2094 192361103 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 3625.9582 5322.045 5200.7181 335437311 xylanase Carbon Cycling Carbon degradation Hemicellulose Halorhabdus tiamatea SARL4B superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorhabdus;species:Halorhabdus tiamatea; 8024.9687 4211.0743 2145.7953 8565.6843 23611.4435 83317124 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6974.4726 8017.8869 3253.3995 37222161 beta_agarase Carbon Cycling Carbon degradation Agar uncultured bacterium superkingdom:Bacteria; 4209.1569 3997.2194 37548696 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13531.6163 3499.7601 6665.4691 329568851 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 3668.713 3678.9951 3678.9951 2798.9971 3024.9233 3516.3495 215459190 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 3313.6574 7647.2813 164456100 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4601.3074 119402999 rgl Carbon Cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 7488.3525 5308.7627 83647422 alkb Organic Remediation Other Hydrocarbons NA Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 11159.5578 398145388 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM33 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5794.2594 5315.1568 9285.4655 3106.0823 171186240 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus neutrophilus V24Sta superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum neutrophilum; 4101.6059 5726.6256 2205.2768 2205.2768 10207.0968 4000.4783 12590.5605 4408.1415 2805.4562 4559.5927 8475.9667 1747.2075 5252.1503 4460.5754 183599410 ppx Phosphorus Polyphosphate degradation NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 35604.2858 291184659 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 4279.3232 398182575 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas sp. GM50 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3928.933 260911675 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 37108.9699 5000.9026 5000.9026 5512.1882 9540.3234 12969.1623 4265.5274 6601.4977 163796514 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid alpha proteobacterium BAL199 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 3498.9012 35211697 gdh Nitrogen Ammonification NA Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 207701.7743 333987083 dsra Sulfur sulfite reduction NA Methanobacterium sp. SWAN-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 3026.5747 238764992 amyA Carbon Cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 4102.6503 291514090 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes shahii WAL 8301 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes shahii; 3845.4444 2899.5565 3023.7482 73762778 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10743.1085 391323966 amyA Carbon Cycling Carbon degradation Starch Shigella flexneri 1235-66 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shigella;species:Shigella flexneri; 8808.6672 90329176 tktA Carbon Cycling Carbon fixation Calvin cycle Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 20040.1005 163759419 FBPase Carbon Cycling Carbon fixation Calvin cycle Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 5625.8834 123228486 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 5455.3692 4425.999 4576.4063 4031.516 2482.5679 3128.6333 307719968 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Sulfurimonas autotrophica DSM 16294 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas autotrophica; 4607.1507 384064754 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4535.9591 3794.5085 255034647 arsc Metal Homeostasis Arsenic Detoxification Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 4374.6563 30013.6421 4147.9367 325980901 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 8171.1735 386137322 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sampsonii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 24353.6505 836398.0856 14134.8452 326548511 amyA Carbon Cycling Carbon degradation Starch Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 6372.7783 373546195 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 6717.9724 2831.1978 2831.1978 7847.304 4707.4354 2798.7578 20208.9118 53728931 dmsa Organic Remediation Others NA Actinobacillus pleuropneumoniae serovar 1 str. 4074 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 6533.2753 255709227 endochitinase Carbon Cycling Carbon degradation Chitin Metarhizium anisopliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 4338.5775 384464070 bphF1 Organic Remediation Aromatics Polycyclic aromatics Citreicella sp. 357 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Citreicella; 6371.3628 4942.1205 138956.7029 149191841 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 5028.4997 7985.2581 164455788 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5456.5655 392968543 linb Organic Remediation Pesticides related compound NA Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 25170.38 3736.2298 2996.0174 156066400 hsp90_Fornicata Other Phylogenetic NA Retortamonas sp. VALE superkingdom:Eukaryota;family:Retortamonadidae;genus:Retortamonas; 4113.6197 60650987 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 16908.1576 2524.7016 148653654 FBPase Carbon Cycling Carbon fixation Calvin cycle Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 3759.627 83840590 sqr Sulfur Sulfide Oxidation NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 5466.6388 6277.9834 6293.0899 5976.1032 3141.3273 2646.7516 241773691 ara Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 24429.7676 156033332 cutinase Carbon Cycling Carbon degradation Cutin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 13517.5556 4648.1752 5613.4859 3136.1634 11009.3381 10793.5561 121716556 Sir Sulfur sulfite reduction NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 5505.3368 357216167 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 6166.0862 297143840 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 5253.934 4028.2248 4909.6088 342812568 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 21982.6629 189916134 dmsa Organic Remediation Others NA Actinobacillus pleuropneumoniae serovar 7 str. AP76 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 6709.87 326551042 RgaE Carbon Cycling Carbon degradation Pectin Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 3363.7646 9745.6905 4769.3132 4048.912 3521.6664 10420.9083 164455346 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5413.3333 3359.9998 3359.9998 21382.1931 33157.2475 3275.9513 2978.7698 302843045 actin_Viridiplantae Other Phylogenetic NA Volvox carteri f. nagariensis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Volvocaceae;genus:Volvox;species:Volvox carteri; 3298.1484 3711.999 6436.9419 4839.0597 4202.8662 4889.9421 5443.8875 10274.3429 4699.945 6602.2023 3986.9456 126621596 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3639.2668 3087.5984 3831.5848 2956.2918 357559821 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 5317.6079 384081701 dmdA Sulfur DMSP degradation NA gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4836.4197 4332.9732 4231.3062 4502.409 3381.6503 219549171 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9779.4609 15644415 xyla Carbon Cycling Carbon degradation Hemicellulose Thermotoga maritima MSB8 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga maritima; 6430.6006 11762.2851 156053812 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 13778.1443 5851.1471 297555321 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 7107.2178 2806.1226 2806.1226 339617805 alkk Organic Remediation Others NA Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 7011.1577 5104.3408 146403703 SoxC Sulfur Sulfur Oxidation NA Acidiphilium cryptum JF-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium;species:Acidiphilium cryptum; 164403.702 356753754 amyA Carbon Cycling Carbon degradation Starch Streptococcus ictaluri 707-05 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus ictaluri; 4830.0045 333991524 cutinase Carbon Cycling Carbon degradation Cutin Mycobacterium sp. JDM601 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 13415.9001 291552951 arylest Organic Remediation Aromatics Other aromatics Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 44109.5233 260615019 pula Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 5071.3001 77362681 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4419.2986 3354.4633 2426.9002 88175409 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 43857.2824 6777.2264 3012.6893 288870030 atza Organic Remediation Herbicides related compound NA Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 5171.6981 1986.1201 1986.1201 2114.7754 21223063 gdh Nitrogen Ammonification NA Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 7309.2402 8029.2369 315500302 xylanase Carbon Cycling Carbon degradation Hemicellulose Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 8815.1123 4806.2197 302899432 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 24264.9438 145241960 amyA Carbon Cycling Carbon degradation Starch Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 8317.5321 71383840 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4818.6443 2912.7531 6078.1422 254445003 cysJ Sulfur Reduction NA Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 391071.7123 305660389 amyA Carbon Cycling Carbon degradation Starch Corynebacterium matruchotii ATCC 14266 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 4595.1355 2074.6472 2074.6472 3176.7555 4281.4168 375150164 cysJ Sulfur Reduction NA Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 4614.8642 9006.6814 334139390 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6264.7809 1994.3295 1994.3295 2077.8254 302672386 phenol_oxidase Carbon Cycling Carbon degradation Lignin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 7350.7982 223714288 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5631.4008 7758.403 4860.4945 2264.9854 22316.5942 4167.119 164456034 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 7053.7012 3901.5246 357383489 amyA Carbon Cycling Carbon degradation Starch Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 15708.7017 13649.4621 13649.4621 27016.4269 5633.8909 2542.4299 3729.9508 326541497 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 35205.9787 190010488 arylest Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia K279a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 4178.0579 13380.7647 145258454 glucoamylase Carbon Cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 11824.1543 2719.782 189201882 ara Carbon Cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 5286.0233 302407490 pec_Cdeg Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 17517.2683 328685111 mer Metal Homeostasis Mercury Detoxification uncultured organism 5285.03 261408908 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9467.5047 301384891 PRI Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. tomato Max13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 5061.0971 384067559 amyA Carbon Cycling Carbon degradation Starch Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 20023.4834 198251224 amyA Carbon Cycling Carbon degradation Starch Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 6375.9629 4348.7705 22057.1755 2516.3877 354565567 urec Nitrogen Ammonification NA Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 5403.1307 288347668 bphd Organic Remediation Aromatics Polycyclic aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4413.3255 2553.5291 2553.5291 9306.5301 5876.6191 3995.879 395647587 pcpe Organic Remediation Herbicides related compound NA Pseudomonas extremaustralis 14-3 substr. 14-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas extremaustralis; 4519.976 10606.7093 385763544 SoxA Sulfur Sulfur Oxidation NA uncultured bacterium ws101A12 superkingdom:Bacteria; 7315.1792 381211248 cysJ Sulfur Reduction NA Lentibacillus sp. Grbi superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lentibacillus; 5792.1061 1663.1481 184196357 amyA Carbon Cycling Carbon degradation Starch Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 7339.8978 10118.6665 11107.6657 161301.475 21631714 bphc Organic Remediation Aromatics Polycyclic aromatics Delftia acidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia; 5257.9334 77969923 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4496.2545 10723.845 6834.2221 1997.0357 3827.3774 16688.8331 357061620 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 302 str. F0323 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella rava; 36688.663 126733216 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3941.262 8843.7803 4736.3698 5606.376 2050.8632 329122162 ppk Phosphorus Polyphosphate synthesis NA Dialister micraerophilus DSM 19965 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister micraerophilus; 11578.5835 284390194 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5922.6214 17129953 nira Nitrogen Assimilatory N reduction NA Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 10321.9182 5596.5166 1985.5732 54778417 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 39198.3571 182413109 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Opitutus terrae PB90-1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Opitutus;species:Opitutus terrae; 6683.6946 3555.8406 363726335 terc Metal Homeostasis Tellurium Detoxification Bacillus amyloliquefaciens IT-45 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 5217.839 66824969 EF1a_amoebozoa Other Phylogenetic NA Dictyostelium discoideum AX4 superkingdom:Eukaryota;order:Dictyosteliida;genus:Dictyostelium;species:Dictyostelium discoideum; 4272.7776 149920361 linb Organic Remediation Pesticides related compound NA Plesiocystis pacifica SIR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Nannocystaceae;genus:Plesiocystis;species:Plesiocystis pacifica; 4891.023 4123.9322 4123.9322 5302.0767 4935.8781 6256.672 6953.5246 10408.5552 8034.849 7017.6997 5110.0415 152146333 mer Metal Homeostasis Mercury Detoxification Beggiatoa sp. SS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 5142.1759 6515.6342 27365252 arsc Metal Homeostasis Arsenic Detoxification Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4323.8791 110679591 poba Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 5010.7312 3383.1559 2243.8729 407749818 arylest Organic Remediation Aromatics Other aromatics Agrobacterium albertimagni AOL15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium albertimagni; 45068.6444 11964.1293 3429.7556 170682.6496 2472.9677 2163.1628 38148.4642 170093245 glx Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 4268.0873 161506727 terc Metal Homeostasis Tellurium Detoxification Lactobacillus helveticus DPC 4571 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus helveticus; 9403.7146 358754999 chitinase Carbon Cycling Carbon degradation Chitin Granulicella mallensis MP5ACTX8 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella mallensis; 46753.0853 302884487 pcpe Organic Remediation Herbicides related compound NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 6361.6583 2832.0699 7315.5576 268316946 mer Metal Homeostasis Mercury Detoxification Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 4727.4549 238727375 xyla Carbon Cycling Carbon degradation Hemicellulose Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 4782.7683 219997364 tktA Carbon Cycling Carbon fixation Calvin cycle Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 16279.515 9930.6469 84393502 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 15896.5387 3099.2397 3099.2397 2484.1312 42522755 amyA Carbon Cycling Carbon degradation Starch Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 5012.969 319944833 amyA Carbon Cycling Carbon degradation Starch Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 6908.4728 95112375 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas entomophila L48 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas entomophila; 4921.2012 211592853 nitrilase Organic Remediation Aromatics Other aromatics Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 5644.7725 45274.0141 13423.5143 19409.2621 8313.1645 129963.7687 8617.2569 23386.8718 12201.6458 26007.825 35614.5622 9215.92 17205.0623 8138.445 317142592 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 5865.985 115379036 cysJ Sulfur Reduction NA Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5826.0727 8285.9634 4785.7394 7295.9478 182438531 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces griseus subsp. griseus NBRC 13350 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus; 5107.7187 2527.3756 2527.3756 117578694 arsc Metal Homeostasis Arsenic Detoxification Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 5299.222 2696017 chitinase Carbon Cycling Carbon degradation Chitin Clostridium paraputrificum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 5185.6649 7304.1783 7304.1783 12247.4073 127168.4309 306835105 ppx Phosphorus Polyphosphate degradation NA Corynebacterium accolens ATCC 49726 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium accolens; 4757.6423 238701294 arsc Metal Homeostasis Arsenic Detoxification Yersinia aldovae ATCC 35236 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia aldovae; 4089.4117 296920728 amoa Nitrogen Nitrification NA uncultured archaeon superkingdom:Archaea; 3975.7601 1898.5359 1898.5359 99038918 arsc Metal Homeostasis Arsenic Detoxification Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 17506.4556 3383.8655 2334.3581 32895118 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7299.0444 22300.9033 249990.815 37401.187 121710016 pcpe Organic Remediation Herbicides related compound NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3830.7519 2576.1786 2576.1786 335048918 mer Metal Homeostasis Mercury Detoxification Megasphaera sp. UPII 199-6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 41669.9553 6620.0653 389934413 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 7982.6034 2572.8457 3758.28 304343534 urec Nitrogen Ammonification NA Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 18479.869 212534216 endochitinase Carbon Cycling Carbon degradation Chitin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10261.9777 318056145 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 20765.255 3157736 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 9978.4548 238597302 phenol_oxidase Carbon Cycling Carbon degradation Lignin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 7179.3128 3824.6203 4400.5558 4937.2685 14219.2954 386391000 dsra Sulfur sulfite reduction NA Desulfovibrio sp. U5L superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 7213.366 128168598 GAPDH_Parabasalia Other Phylogenetic NA Devescovina sp. Nk9 superkingdom:Eukaryota;order:Cristamonadida;family:Lophomonadidae;genus:Devescovina; 8292.703 2548.5031 2548.5031 284448000 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7179.0882 61650.7053 342807508 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 5382.6367 2409.1955 2409.1955 253741517 hsp90_Fornicata Other Phylogenetic NA Giardia intestinalis ATCC 50581 superkingdom:Eukaryota;family:Hexamitidae;genus:Giardia;species:Giardia intestinalis; 11478.8049 254242776 vana Carbon Cycling Carbon degradation Vanillin/Lignin Pseudomonas aeruginosa 2192 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 5419.4791 2472.4699 2472.4699 262199969 linb Organic Remediation Pesticides related compound NA Haliangium ochraceum DSM 14365 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Kofleriaceae;genus:Haliangium;species:Haliangium ochraceum; 15943.1485 36660.8161 3925.2932 4195.5967 158318648 tfda Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5708.9041 118424256 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6250.6457 7307.8968 73539320 xylg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 8108.2025 5401.5837 5820.4907 257458260 amyA Carbon Cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 7065.9322 2304.4368 2304.4368 2706.319 5076.9609 14038.0305 8253.9241 19421902 rd Organic Remediation Chlorinated solvents NA Desulfitobacterium hafniense superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 15411.4467 165880079 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 4059.1711 4337.0121 308752406 SoxA Sulfur Sulfur Oxidation NA Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 8244.0514 23088.4804 12229.8433 77384600 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf0-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 8287.9264 2852.6435 2852.6435 4886556 pcag Organic Remediation Aromatics Other aromatics Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 31528.1869 255532302 heparinase Carbon Cycling Carbon degradation Heparin Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 6574.6956 3915.8043 3915.8043 332592267 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 16295.1598 375752889 cmci Organic Remediation Aromatics Other aromatics Gordonia polyisoprenivorans VH2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 9199.9885 238715098 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 3866.703 6063.5036 149190492 cysJ Sulfur Reduction NA Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6272.4134 10956966 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 4453.9874 2729.2739 2729.2739 4641.4025 2922.1519 2018.9253 22252856 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 17030.343 198251329 mer Metal Homeostasis Mercury Detoxification Octadecabacter antarcticus 307 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 4099.8583 94969694 terc Metal Homeostasis Tellurium Detoxification Acidobacteria bacterium Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 5146.5328 164455574 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 9738.6862 54778365 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5202.9581 288574601 mer Metal Homeostasis Mercury Detoxification Dethiosulfovibrio peptidovorans DSM 11002 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Dethiosulfovibrio;species:Dethiosulfovibrio peptidovorans; 4931.0361 26903.5645 1920.6061 388569788 terc Metal Homeostasis Tellurium Detoxification Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 37149.8779 49176889 pcpe Organic Remediation Herbicides related compound NA Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 14164.8074 91204560 hzo Nitrogen Anammox NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 21785.6111 51652.4687 2260.5457 327371966 oxdb Organic Remediation Aromatics Nitoaromatics Burkholderia gladioli BSR3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia gladioli; 6773.2228 2280.4876 341820562 ppx Phosphorus Polyphosphate degradation NA Weissella thailandensis fsh4-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella thailandensis; 4574.7128 2389.2766 2389.2766 6037.292 197787378 arsc Metal Homeostasis Arsenic Detoxification Oligotropha carboxidovorans OM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Oligotropha;species:Oligotropha carboxidovorans; 4268.0224 4828.1973 4188.3402 327393564 cellobiase Carbon Cycling Carbon degradation Cellulose Pantoea ananatis AJ13355 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 9244.325 3663.7018 18783.3254 2205.6303 357046185 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 9564.5906 355385860 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 4549.6547 3125.2791 7182.7333 6069.1891 5487.5702 227498154 amyA Carbon Cycling Carbon degradation Starch Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7066.0244 5322.6338 148978453 ppx Phosphorus Polyphosphate degradation NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 8252.4857 116743241 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9352.8496 2535.8968 2535.8968 258513443 dsra Sulfur sulfite reduction NA Desulfotomaculum acetoxidans DSM 771 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum acetoxidans; 7783.9983 13648.7501 51224.3228 2611.5071 212533279 ara Carbon Cycling Carbon degradation Hemicellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 5156.0177 3880.7097 4936.0726 5126.9005 374984358 alginase Carbon Cycling Carbon degradation Alginate Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 35493.2869 15613.6439 15613.6439 5354.8867 11524.5924 3853.9339 3188.3859 150036090 SoxB Sulfur Sulfur Oxidation NA Chlorobium limicola superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium; 4266.7423 239506865 amyA Carbon Cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 4663.1185 4192.1432 8273.6442 6612.6657 3662.0223 330428191 arylest Organic Remediation Aromatics Other aromatics Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 7188.7992 2293.5888 6524.4015 2472.4896 302308632 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Ashbya gossypii ATCC 10895 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Eremothecium;species:Eremothecium gossypii; 5426.3144 12158.5985 6503.2362 206601279 B_lactamase_A Virulence Antibiotic resistance Degradation Enterobacter aerogenes superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 4132.9488 3925.0522 3596.187 4835.9496 28974744 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4509.6038 2172.5372 2172.5372 302338628 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 5997.3644 375148826 terc Metal Homeostasis Tellurium Detoxification Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 5926.0791 4639.4948 296813107 nitrate_reductase Nitrogen N Assimilation NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4524.5518 171680536 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Podospora anserina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 5886.2371 3895.5767 315490823 amyA Carbon Cycling Carbon degradation Starch Mobiluncus curtisii ATCC 51333 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 6068.1998 2179.1442 2179.1442 5670.9375 296014341 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Planctomyces limnophilus DSM 3776 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces limnophilus; 4704.4474 2481.8429 2481.8429 6244.2813 89053725 atzb Organic Remediation Herbicides related compound NA Jannaschia sp. CCS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Jannaschia; 12546.3862 5093.0258 391904.2498 251799166 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5287.2726 344690034 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 8639.7009 11996.3847 11996.3847 9425.6054 12458.6818 239909269 B_lactamase_A Virulence Antibiotic resistance Degradation Enterobacter cloacae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 7339.1614 3446.4667 42736.8362 2761.1142 262375451 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acinetobacter lwoffii SH145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter lwoffii; 4537.4881 2576.4452 118681415 terc Metal Homeostasis Tellurium Detoxification Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 5586.6044 6435.3543 7883.8546 381402680 cysJ Sulfur Reduction NA Pantoea sp. Sc1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 9826.9851 7130.0283 4701.2232 2189.4835 14555.3075 2048.1641 4838.2858 71002426 Sir Sulfur sulfite reduction NA Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 5708.3804 2026.9756 2026.9756 160425793 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 20705.8524 7006.4955 312173432 cueo Metal Homeostasis Copper Detoxification Erwinia amylovora ATCC BAA-2158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; 438904.4414 74053780 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 13335.8825 3992.1212 4661.1662 238490206 endochitinase Carbon Cycling Carbon degradation Chitin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 9586.9889 3460.2383 3460.2383 78486426 phn Organic Remediation Herbicides related compound NA Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 138845.4921 317167019 tktA Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 4822.5872 3009.2691 3009.2691 333388241 gdh Nitrogen Ammonification NA Centipeda periodontii DSM 2778 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Centipeda;species:Centipeda periodontii; 6008.6356 406895605 bphF1 Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium superkingdom:Bacteria; 4072.0375 2395.9174 156059056 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 9920.7268 2715.4313 82487.726 113474131 ppx Phosphorus Polyphosphate degradation NA Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 14347.2719 3073.8135 355683164 amyA Carbon Cycling Carbon degradation Starch Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 6055.1706 288922331 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 5886.3351 158332930 chitinase Carbon Cycling Carbon degradation Chitin Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 6014.6982 22402.637 5901.2941 10604.9752 6708.0792 18078.7691 12744250 nosz Nitrogen Denitrification NA uncultured temperate forest soil bacterium CZ0140 superkingdom:Bacteria; 196841.1789 390457162 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 8219.4782 156868639 amyA Carbon Cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 4337.1921 335360212 dsra Sulfur sulfite reduction NA Thermodesulfatator indicus DSM 15286 superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfatator;species:Thermodesulfatator indicus; 22710.6001 158304619 tehb Metal Homeostasis Tellurium Detoxification Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 4728.9915 6690.0527 4466.07 4672.5403 1888.7168 46517947 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 15759.6384 261363857 nosz Nitrogen Denitrification NA Neisseria mucosa ATCC 25996 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria mucosa; 8621.7044 43513.0226 43513.0226 19498.3836 9937.2342 5698.8343 3635.4772 317398439 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11838.2172 4591.2194 84778315 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3998.2271 384059394 ppx Phosphorus Polyphosphate degradation NA Acetobacter pasteurianus IFO 3283-26 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 22595.2436 60749.7415 60749.7415 130124.7542 10858.5749 14639.067 5010.8142 2856.6371 354814058 atza Organic Remediation Herbicides related compound NA Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 9787.6072 206679783 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Rhodobacteraceae bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 5042.8427 4351.0372 2336.0404 45140.8877 149812794 arsc Metal Homeostasis Arsenic Detoxification Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4084.5594 3836.5611 3836.5611 3828.8995 2991.532 389402835 nifh Nitrogen Nitrogen fixation NA Desulfobacter postgatei 2ac9 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter;species:Desulfobacter postgatei; 9224.0274 398342175 b_lactamase Virulence Antibiotic resistance Degradation Leptospira inadai serovar Lyme str. 10 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira inadai; 7818.7099 7207.3501 7207.3501 3404.4769 260596554 cueo Metal Homeostasis Copper Detoxification Cronobacter turicensis z3032 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Cronobacter;species:Cronobacter turicensis; 9281.4119 13369.6267 6114.9988 6104.1153 150866757 glucoamylase Carbon Cycling Carbon degradation Starch Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 95816.6565 17855.0245 17855.0245 2182532 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 5180.8571 393183765 amie Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 9095.96 3104.1332 12169.2242 153008.2269 381386719 urec Nitrogen Ammonification NA Phycisphaera mikurensis NBRC 102666 superkingdom:Bacteria;phylum:Planctomycetes;class:Phycisphaerae;order:Phycisphaerales;family:Phycisphaeraceae;genus:Phycisphaera;species:Phycisphaera mikurensis; 5468.9602 4687.9495 4173.3526 355683209 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 4146.1701 338810677 tehb Metal Homeostasis Tellurium Detoxification Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 223411.4766 238839187 nitrate_reductase Nitrogen N Assimilation NA Microsporum canis CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 4615.8913 10579810 alkk Organic Remediation Others NA Halobacterium sp. NRC-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halobacterium;species:Halobacterium salinarum; 7157.5609 164455280 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8828.4126 4909.5892 2786.52 150863923 lactase_fungi Carbon Cycling Carbon degradation Lactose Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 6059.6431 5909.0703 4297.2973 5979.631 4995.6473 326635678 phytase Phosphorus Phytic acid hydrolysis NA Janthinobacterium sp. TN115 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 8068.6377 260605538 arsc Metal Homeostasis Arsenic Detoxification Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 7812.5489 68164626 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4668.6404 2683.7634 348027370 chitinase Carbon Cycling Carbon degradation Chitin Megasphaera elsdenii DSM 20460 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera elsdenii; 126304.5367 10858.6473 225792025 ara Carbon Cycling Carbon degradation Hemicellulose Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 15295.2942 5230.7287 10067.1619 169606027 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 4217.5225 385680785 ben_bcla virulence NA NA Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 40108.2876 8744.6823 294970985 alkk Organic Remediation Others NA Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 7399.1177 6747.6105 2332.1404 5185.7906 387860834 nahf Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. C6 (2012) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5090.2403 109452389 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4438.5327 4324.892 3058.5488 2980.5942 4230.0055 6140.5062 2263.7679 3316.5669 99083171 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 30335.0305 359329876 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 10191.353 325545032 pme Carbon Cycling Carbon degradation Pectin Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 4525.483 4773.1949 1993.6885 333999023 bphF1 Organic Remediation Aromatics Polycyclic aromatics Treponema primitia ZAS-2 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 5968.027 393792768 amyA Carbon Cycling Carbon degradation Starch Sulfuricella denitrificans skB26 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Sulfuricella;species:Sulfuricella denitrificans; 41623.4568 4823.7856 4958.2018 407717305 xylm Organic Remediation Aromatics BTEX and related aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 6917.4244 2400.3404 151302290 aps_apra Sulfur adenylylsulfate reductase NA Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 12181.4016 3960.8731 3960.8731 37791151 phenol_oxidase Carbon Cycling Carbon degradation Lignin Volvariella volvacea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pluteaceae;genus:Volvariella; 11614.1911 2813.9083 5147.782 225791614 chitinase Carbon Cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 5934.3945 349687474 arsc Metal Homeostasis Arsenic Detoxification Gluconacetobacter oboediens 174Bp2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter oboediens; 12553.0337 4715.236 4715.236 2396.501 16220.6605 4694.5305 347816050 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Candidatus Glomeribacter gigasporarum BEG34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Candidatus Glomeribacter;species:Candidatus Glomeribacter gigasporarum; 6508.9883 5970.8955 3401.4169 2284.9027 260772021 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 5818.7365 20273.6839 1996.5906 146188517 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5111.2582 13249543 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7237.1334 14602032 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 211233.8145 114319987 arsc Metal Homeostasis Arsenic Detoxification Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 6017.4827 3951.3703 336265545 glx Carbon Cycling Carbon degradation Lignin Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 4263.9441 5551.7687 3503.1979 3718.7499 6086.9661 5171.0663 2555.2524 2144.9248 5068.6989 298234710 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 4118.2215 339502075 dehh109 Organic Remediation Chlorinated solvents NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 9098.3021 123992183 amyA Carbon Cycling Carbon degradation Starch Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 9937.6502 5030.7576 5030.7576 221633904 amyA Carbon Cycling Carbon degradation Starch Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 4612.3977 218321786 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7905.6391 4760.218 3464.8198 7160829 nirs Nitrogen Denitrification NA uncultured bacterium pA3 superkingdom:Bacteria; 4977.7046 398174033 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM50 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8201.029 295633757 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Tuber melanosporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber; 8305.0025 2263.2775 212711319 cueo Metal Homeostasis Copper Detoxification Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 4628.3 170027507 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4885.4339 4862.3752 4862.3752 216576.1076 4410.5711 334103619 linb Organic Remediation Pesticides related compound NA Sphingobium chlorophenolicum L-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium chlorophenolicum; 6587.0701 5749.8423 168146 cutinase Carbon Cycling Carbon degradation Cutin Fusarium solani superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 3934.0429 4974.9663 384086372 atzd Organic Remediation Herbicides related compound NA Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 4885.2919 219849782 terc Metal Homeostasis Tellurium Detoxification Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 6393.4596 12392.645 158329955 pcag Organic Remediation Aromatics Other aromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 11046.546 384082307 amyA Carbon Cycling Carbon degradation Starch gamma proteobacterium HIMB30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 15114.1396 358369900 chnb Organic Remediation Other Hydrocarbons NA Aspergillus kawachii IFO 4308 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus kawachii; 5097.0418 11946.9096 183976680 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4923.7399 391859945 xylg Organic Remediation Aromatics Aromatic carboxylic acid Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 10150.6299 3289.346 3289.346 5343.789 3963.2658 148838146 amyA Carbon Cycling Carbon degradation Starch Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 4249.5082 2250.0565 2250.0565 6452.5217 161380814 PRI Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 5575.9845 3711.9614 3186.4949 255079662 mannanase Carbon Cycling Carbon degradation Hemicellulose Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 429057.9487 187984221 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 186742.8478 384522085 bphd Organic Remediation Aromatics Polycyclic aromatics Saccharomonospora glauca K62 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora glauca; 24800.3928 336414745 rgl Carbon Cycling Carbon degradation Pectin Bacteroides ovatus 3_8_47FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 8781.3544 170092649 mannanase Carbon Cycling Carbon degradation Hemicellulose Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9196.5981 338172449 cysI Sulfur Other NA Candidatus Moranella endobia PCIT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Moranella;species:Candidatus Moranella endobia; 19813.4509 337270872 pcpb Organic Remediation Herbicides related compound NA Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 17589.1719 3157692 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 5662.8617 332695470 3HP_CoAs Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Acidianus hospitalis W1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus;species:Acidianus hospitalis; 6610.5118 218723587 axe Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 5238.1685 169803287 xylanase Carbon Cycling Carbon degradation Hemicellulose Leuconostoc citreum KM20 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc citreum; 7902.3508 385277616 urec Nitrogen Ammonification NA gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4585.2963 7018.677 4329.2526 2027.3263 26665347 hao Nitrogen Nitrification NA Nitrosomonas europaea superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 4487.2947 9315.214 118424458 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4402.8079 353544465 amyA Carbon Cycling Carbon degradation Starch Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 45732.437 156446863 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4085.9031 112821608 phdk Organic Remediation Polycyclic aromatics NA Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5509.1491 7251.924 3226.7131 341598059 urec Nitrogen Ammonification NA Staphylococcus capitis VCU116 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus capitis; 5146.656 351000840 phenol_oxidase Carbon Cycling Carbon degradation Lignin Antrodiella faginea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Antrodiella; 15249.2337 7963.8356 2458.2544 6193.9649 380509839 arylest Organic Remediation Aromatics Other aromatics Xanthomonas sacchari NCPPB 4393 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas sacchari; 4958.2883 11919.4487 28542653 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15194.046 4808515 pcag Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6468.4562 2221.4565 2221.4565 48000.1499 3781.1918 4126.0226 32224.7669 14501.0111 24220.6507 5362.4759 4456.3422 408750506 pcpe Organic Remediation Herbicides related compound NA Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 10679.2787 3554.6763 3554.6763 6778.6262 4325.993 2740.5404 2709.5872 7035.9313 115324.1608 256420856 pme Carbon Cycling Carbon degradation Pectin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 3014.8411 3014.8411 24280.5429 365736991 terc Metal Homeostasis Tellurium Detoxification Flavobacterium columnare ATCC 49512 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium columnare; 3713.7323 3713.7323 7868.6975 260087185 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces flavogriseus ATCC 33331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces flavogriseus; 3536.9401 3536.9401 5959.2741 238581958 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 2253.8673 2253.8673 4726.852 9087.3694 2347.4329 254029562 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4527.2961 4527.2961 2056.7036 403763927 linb Organic Remediation Pesticides related compound NA Indibacter alkaliphilus LW1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cyclobacteriaceae;genus:Indibacter;species:Indibacter alkaliphilus; 2321.1821 2321.1821 3092.9278 6661.0704 269216861 nifh Nitrogen Nitrogen fixation NA Slackia exigua ATCC 700122 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia exigua; 8329.5969 8329.5969 127868.8458 337284837 amyA Carbon Cycling Carbon degradation Starch Pyrococcus yayanosii CH1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus yayanosii; 28150.3067 28150.3067 20434.127 33932.6887 21260.151 223982603 gdh Nitrogen Ammonification NA Holdemania filiformis DSM 12042 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Holdemania;species:Holdemania filiformis; 7039.6512 7039.6512 147744754 nasa Nitrogen Assimilatory N reduction NA Halomonas sp. 'A4 isolate-6' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6014.4127 6014.4127 311908635 mannanase Carbon Cycling Carbon degradation Hemicellulose Leadbetterella byssophila DSM 17132 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Leadbetterella;species:Leadbetterella byssophila; 3273.0199 3273.0199 5929.2736 80281.9357 113530712 nirs Nitrogen Denitrification NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5502.8535 5502.8535 4885.1216 7436.9503 4596.5819 94471163 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15364.1421 15364.1421 4613.0168 8591.5738 218224442 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 10530.4059 10530.4059 2898.5694 110932000 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 3539.0789 3539.0789 299743452 glucoamylase Carbon Cycling Carbon degradation Starch Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 27208.4807 27208.4807 11515.6126 113729901 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter sp. K31 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter; 5655.7561 5655.7561 151302257 aps_apra Sulfur adenylylsulfate reductase NA Desulfofrigus sp. HRS-La3x superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfofrigus; 2820.4631 2820.4631 194332864 fccab Sulfur Sulfide Oxidation NA Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 3003.9792 3003.9792 209524662 urec Nitrogen Ammonification NA Arthrospira maxima CS-328 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira maxima; 2518.2197 2518.2197 257457468 amyA Carbon Cycling Carbon degradation Starch Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 20880.5557 20880.5557 257899780 endochitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 3819.22015 3819.22015 122571.08865 1890335 one_ring_23diox Organic Remediation Aromatics Other aromatics Cupriavidus necator superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 26211.5653 26211.5653 99036678 pcag Organic Remediation Aromatics Other aromatics Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 13775.7746 13775.7746 163731551 dehh Organic Remediation Chlorinated solvents NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 5685.2881 5685.2881 332360470 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus sanguinis SK355 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 1998.0901 1998.0901 20087.6077 30656.0874 2685.678 145627973 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus influenzae 22.1-21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus influenzae; 2039.2218 2039.2218 297547915 chitinase Carbon Cycling Carbon degradation Chitin Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 12836.5409 12836.5409 78210749 tphb Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. E6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 38071.0428 38071.0428 5616.9846 313203953 amyA Carbon Cycling Carbon degradation Starch Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 15099.2519 15099.2519 10760.985 229468561 amyA Carbon Cycling Carbon degradation Starch Exiguobacterium sp. AT1b superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;genus:Exiguobacterium; 1835.5344 1835.5344 289616467 amyA Carbon Cycling Carbon degradation Starch Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 6243.5264 6243.5264 398072912 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3303.4997 3303.4997 3067.4187 1953.7988 2495.8984 7397.7816 18100.7432 23867880 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 2751.0751 2751.0751 2830.135 6923.3615 353204496 glucoamylase Carbon Cycling Carbon degradation Starch Mesorhizobium australicum WSM2073 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium australicum; 2999.0387 2999.0387 3805.6868 373107695 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium ACC2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Stomatobaculum; 6590.5284 6590.5284 4467.7523 2676.7704 7677.8825 2043.296 375090191 ppx Phosphorus Polyphosphate degradation NA Facklamia languida CCUG 37842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Facklamia;species:Facklamia languida; 8618.595 8618.595 3250.5038 6264.8781 2887.3438 3650.6777 169886102 nira Nitrogen Assimilatory N reduction NA Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 3042.5743 3042.5743 112462251 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2122.7178 2122.7178 302407103 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 2501.6252 2501.6252 2523.6353 149174031 dehh109 Organic Remediation Chlorinated solvents NA Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 6347.6353 6347.6353 5074.8104 11788.4378 373809758 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2670.8923 2670.8923 15934.2423 4142.5831 11678.6344 2214.973 296119086 urec Nitrogen Ammonification NA Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 5794.9182 5794.9182 291422545 ppx Phosphorus Polyphosphate degradation NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 4795.8893 4795.8893 9231.1845 4800.8832 256685237 xyla Carbon Cycling Carbon degradation Hemicellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 2691.0086 2691.0086 5293.0137 9690.3504 9494.9744 223039173 terc Metal Homeostasis Tellurium Detoxification Campylobacter rectus RM3267 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter rectus; 6718.0769 6718.0769 5432.0383 56181.9467 383761009 atza Organic Remediation Herbicides related compound NA Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 3373.7455 3373.7455 15184.8635 9261.4109 7177.7794 7673.6362 260943926 Sir Sulfur sulfite reduction NA Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 7444.5197 7444.5197 311900274 amyA Carbon Cycling Carbon degradation Starch Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 2001.5167 2001.5167 359255229 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 2577.083 2577.083 4774.3191 3480.1774 iegAssA1 assa Organic Remediation Other Hydrocarbons NA NA 2107.5705 2107.5705 298242341 vgb Virulence Antibiotic resistance Degradation Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 47801.6913 47801.6913 294678078 arsc Metal Homeostasis Arsenic Detoxification Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 11799.0795 11799.0795 22125.4288 322410210 nosz Nitrogen Denitrification NA Bacillus sp. Ult-42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4249.0975 4249.0975 3709.313 106013289 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2547.1296 2547.1296 11121.2097 2413.2576 8833.5749 2478.0261 229377988 PRI Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes HOxBLS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 22769.2158 22769.2158 4525.8978 50954918 amyA Carbon Cycling Carbon degradation Starch Leifsonia xyli subsp. xyli str. CTCB07 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Leifsonia;species:Leifsonia xyli; 2544.2505 2544.2505 6313.989 9240.2163 4288.8826 3281.5786 2498.4633 5497.8117 9304.7398 5529.7537 6153.8825 3135.8105 87301149 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5168.1145 5168.1145 327313023 amyA Carbon Cycling Carbon degradation Starch Prevotella denticola F0289 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella denticola; 5577.1619 5577.1619 225874570 nira Nitrogen Assimilatory N reduction NA Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteria;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 2172.6182 2172.6182 6354.5706 5202.2401 2698.6208 8732.7283 5357.5432 3199.0204 3014.7452 8203.3343 169643675 mnp Carbon Cycling Carbon degradation Lignin Phlebia sp. MG60 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 1839.8651 1839.8651 1770.7426 28542623 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4281.3125 4281.3125 239579683 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 8344.5403 8344.5403 4115.6383 344940361 mer Metal Homeostasis Mercury Detoxification Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 3419.2206 3419.2206 3367.2058 302883482 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 3917.1097 3917.1097 6084.518 38037.2404 4893.0513 209958311 ppk Phosphorus Polyphosphate synthesis NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 2391.7359 2391.7359 169625413 glucoamylase Carbon Cycling Carbon degradation Starch Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 5260.0329 5260.0329 156600930 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2196.5319 2196.5319 262202658 urec Nitrogen Ammonification NA Gordonia bronchialis DSM 43247 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia bronchialis; 2785.6279 2785.6279 11077.8703 219680452 alkk Organic Remediation Others NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 7973.3514 7973.3514 11886.867 10378.1782 5855.152 8871.0919 510420.4821 4903.9571 69175.1033 6284.2748 118431856 AACT_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Aeropyrum pernix K1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Aeropyrum;species:Aeropyrum pernix; 2144.3633 2144.3633 5014.4477 335343780 amyA Carbon Cycling Carbon degradation Starch Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 2371.096 2371.096 156231869 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 9685.246 9685.246 294790751 terc Metal Homeostasis Tellurium Detoxification Scardovia inopinata F0304 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia inopinata; 2869.3576 2869.3576 198248026 CsoSCA Carbon Cycling Carbon fixation Bacterial Microcompartments Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 1869.5121 1869.5121 110598887 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 3354.6904 3354.6904 13446355 rgl Carbon Cycling Carbon degradation Pectin Cellvibrio japonicus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 2129.0884 2129.0884 157679046 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4078.6155 4078.6155 353193312 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3276.822 3276.822 2248.2767 2636.0006 78696397 dmsa Organic Remediation Others NA Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6109.4925 6109.4925 11326.3701 407788352 phn Organic Remediation Herbicides related compound NA Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 2269.0472 2269.0472 3968.834 7266.3761 312963141 gdh Nitrogen Ammonification NA Pseudomonas fluorescens WH6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6359.0843 6359.0843 71846828 nosz Nitrogen Denitrification NA Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 2966.7295 2966.7295 4424.5886 60704.471 9281.2905 3127.6555 8736.5554 4174.1903 3308.4659 41358.6891 349794530 FBPase Carbon Cycling Carbon fixation Calvin cycle Thiorhodospira sibirica ATCC 700588 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thiorhodospira;species:Thiorhodospira sibirica; 5013.8203 5013.8203 189347851 amyA Carbon Cycling Carbon degradation Starch Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 1880.518 1880.518 1914.4436 374295210 dsra Sulfur sulfite reduction NA Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 2018.8629 2018.8629 14495300 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 2649.7601 2649.7601 5396.4659 222354272 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 2413.6101 2413.6101 4646.7588 2034.8209 3647.9748 8925.5909 296270184 atzd Organic Remediation Herbicides related compound NA Thermobispora bispora DSM 43833 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Thermobispora;species:Thermobispora bispora; 2787.4239 2787.4239 7659.8297 7329.4597 2128.0264 2803.771 6024.0554 17132260 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 7434.5571 7434.5571 256419133 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 3420.4251 3420.4251 9063.545 5328.3862 133915613 endochitinase Carbon Cycling Carbon degradation Chitin Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 2061.9629 2061.9629 4637.3525 1809.224 2925.4277 2996.4028 5011.9744 398344725 nosz Nitrogen Denitrification NA Leptospira inadai serovar Lyme str. 10 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira inadai; 2079.4058 2079.4058 193996656 phytase Phosphorus Phytic acid hydrolysis NA uncultured bacterium superkingdom:Bacteria; 4639.5337 4639.5337 323365704 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 28677.7844 28677.7844 325975949 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 2741.2109 2741.2109 3701.3551 90874.2783 37955634 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2333.3672 2333.3672 77996098 napa Nitrogen Dissimilatory N reduction NA Carboxydothermus hydrogenoformans Z-2901 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Carboxydothermus;species:Carboxydothermus hydrogenoformans; 2947.4865 2947.4865 6640.1305 194345582 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. Mg1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2747.2362 2747.2362 2841.0944 7547.2002 2685.4002 110285356 tehb Metal Homeostasis Tellurium Detoxification Chelativorans sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 3439.0452 3439.0452 2557.6693 323316351 nrfa Nitrogen Dissimilatory N reduction NA Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 16403.8373 16403.8373 269127413 urec Nitrogen Ammonification NA Thermomonospora curvata DSM 43183 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Thermomonosporaceae;genus:Thermomonospora;species:Thermomonospora curvata; 3780.7703 3780.7703 6120.3837 3417.0113 308231145 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3638.1536 3638.1536 3389.8183 74057960 PRK Carbon Cycling Carbon fixation Calvin cycle Thiobacillus denitrificans ATCC 25259 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus;species:Thiobacillus denitrificans; 8073.228 8073.228 35307.1464 239579627 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 2760.7612 2760.7612 8797.0578 225164047 alginase Carbon Cycling Carbon degradation Alginate Diplosphaera colitermitum TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae;genus:Diplosphaera;species:Diplosphaera colitermitum; 11092.2086 11092.2086 365924635 ppx Phosphorus Polyphosphate degradation NA Lactobacillus mali KCTC 3596 = DSM 20444 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mali; 1738.1689 1738.1689 2909.6231 5195.3231 1799.9344 145303992 terc Metal Homeostasis Tellurium Detoxification Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 23497.121 23497.121 4978.4447 359297644 dehh109 Organic Remediation Chlorinated solvents NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 5200.604 5200.604 113525880 urec Nitrogen Ammonification NA Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 3307.9633 3307.9633 3810.3429 4476.973 149810857 urec Nitrogen Ammonification NA Roseobacter sp. AzwK-3b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2815.3312 2815.3312 6931.1368 146406440 tfth Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3010.37235 3010.37235 343507044 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 3102.3075 3102.3075 39941244 endochitinase Carbon Cycling Carbon degradation Chitin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 2264.5604 2264.5604 9086.0921 2114.6706 328773382 glx Carbon Cycling Carbon degradation Lignin Batrachochytrium dendrobatidis JAM81 superkingdom:Eukaryota;kingdom:Fungi;phylum:Chytridiomycota;class:Chytridiomycetes;order:Rhizophydiales;genus:Batrachochytrium;species:Batrachochytrium dendrobatidis; 2385.438 2385.438 302422574 glucoamylase Carbon Cycling Carbon degradation Starch Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 3997.6007 3997.6007 259506673 vana Carbon Cycling Carbon degradation Vanillin/Lignin Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 2518.8066 2518.8066 85826951 pcag Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2681.1083 2681.1083 11004.1223 215466282 badh Organic Remediation Aromatics Other aromatics Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 3208.7648 3208.7648 283799627 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 2373.9001 2373.9001 391879461 amyA Carbon Cycling Carbon degradation Starch Parascardovia denticolens IPLA 20019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Parascardovia;species:Parascardovia denticolens; 3845.9094 3845.9094 389683647 xylc Organic Remediation Aromatics BTEX and related aromatics Pseudomonas chlororaphis O6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 6792.966 6792.966 8270.6982 2208.4776 133010.0009 49650361 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia; 2193.8851 2193.8851 4063.6016 7900.9716 4147.6889 3219.0726 2298.2054 259483914 bph Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2120.6747 2120.6747 4107.9232 4160464 catechol_b Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4971.4095 4971.4095 119391519 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3798.4044 3798.4044 3584.3643 54297174 nhh Organic Remediation Aromatics Nitoaromatics Legionella pneumophila str. Paris superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella pneumophila; 13445.0466 13445.0466 5767.6541 4308.6517 219858087 xylanase Carbon Cycling Carbon degradation Hemicellulose Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 4044.7689 4044.7689 6098.8075 91229318 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 2923.045 2923.045 10677.3864 91223446 chitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 2229.0694 2229.0694 3029.2759 4820.5593 112463229 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2109.8016 2109.8016 91775771 amyA Carbon Cycling Carbon degradation Starch Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 9714.8025 9714.8025 270333232 RgaE Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 15542.4164 15542.4164 302680290 nagg Organic Remediation Aromatics Aromatic carboxylic acid Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3840.6047 3840.6047 223019594 catb Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3435.9883 3435.9883 4692.8219 339433871 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Karlodinium veneficum superkingdom:Eukaryota;class:Dinophyceae;order:Gymnodiniales;family:Kareniaceae;genus:Karlodinium; 3767.9583 3767.9583 2071.2223 3651.5903 3814.6644 224945276 gdh Nitrogen Ammonification NA Corynebacterium matruchotii ATCC 33806 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium matruchotii; 2568.076 2568.076 332377328 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4523.8931 4523.8931 5117.376 4972.2746 101904.6337 209486882 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2165.5528 2165.5528 5574.9263 325917695 amyA Carbon Cycling Carbon degradation Starch Xanthomonas vesicatoria ATCC 35937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas vesicatoria; 36179.8353 36179.8353 359401796 one_ring_23diox Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 11235.0229 11235.0229 8313.5138 257700792 bphd Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 2980.3273 2980.3273 262274345 endochitinase Carbon Cycling Carbon degradation Chitin Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;species:Grimontia hollisae; 3775.498 3775.498 7083.81175 4021.3482 7477.6563 124363429 mcra Carbon Cycling Methane Methanogenesis Methanocorpusculum labreanum Z superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanocorpusculaceae;genus:Methanocorpusculum;species:Methanocorpusculum labreanum; 2750.1912 2750.1912 383789362 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 21705.9103 21705.9103 6988.4996 2791.0485 294675316 amyA Carbon Cycling Carbon degradation Starch Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 2047.1967 2047.1967 262337087 exochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Ex25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 3451.0693 3451.0693 148474770 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2467.3514 2467.3514 8400.6834 119500486 glucoamylase Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 3711.852 3711.852 9796014 xylanase Carbon Cycling Carbon degradation Hemicellulose Agaricus bisporus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Agaricus; 15223.9553 15223.9553 6260.955 148555550 bend Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 1899.5924 1899.5924 12517.6953 1644.0331 48995934 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. BAV1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 1947.8962 1947.8962 317396059 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 2224.3579 2224.3579 261338529 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 4090.7302 4090.7302 9570.723 206688090 soxY Sulfur Sulfur Oxidation NA Rhodobacterales bacterium Y4I superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 2488.2981 2488.2981 6247.0726 6262.4782 1928.397 371765212 xyla Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium oral taxon 082 str. F0431 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae bacterium oral taxon 082; 2259.7211 2259.7211 218988996 phenol_oxidase Carbon Cycling Carbon degradation Lignin Inocybe sp. ST-2008 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;genus:Inocybe; 5028.8909 5028.8909 9362.3447 333382508 RgaE Carbon Cycling Carbon degradation Pectin Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 7561.5773 7561.5773 4415.7701 300769894 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 30605.3138 30605.3138 60476340 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 30655.7839 30655.7839 164641276 Sir Sulfur sulfite reduction NA Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 17018.9923 17018.9923 3732.6367 329113528 atzb Organic Remediation Herbicides related compound NA Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 5364.9515 5364.9515 12156.9484 6552.4445 150017245 xyla Carbon Cycling Carbon degradation Hemicellulose Clostridium beijerinckii NCIMB 8052 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium beijerinckii; 3636.9968 3636.9968 83755803 ppx Phosphorus Polyphosphate degradation NA Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 18570.9047 18570.9047 71065172 narg Nitrogen Denitrification NA Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 2770.3299 2770.3299 4957.6889 261252242 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio orientalis CIP 102891 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 15671.8691 15671.8691 4658.0883 88175199 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4249.705 4249.705 8197.3733 4029.402 6063.4394 3206.5355 384478891 chitinase Carbon Cycling Carbon degradation Chitin Providencia stuartii MRSN 2154 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 3060.3127 3060.3127 20501965 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2446.9295 2446.9295 6846.24 113867726 qorl Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4359.9891 4359.9891 19841.9892 4024.5748 63029758 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6730.1694 6730.1694 2747.1717 529424 urec Nitrogen Ammonification NA superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 2834.4685 2834.4685 229495531 gdh Nitrogen Ammonification NA Porphyromonas endodontalis ATCC 35406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas endodontalis; 2454.5548 2454.5548 12748.664 4437.4354 7697.3211 87310914 amyA Carbon Cycling Carbon degradation Starch Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 2118.6752 2118.6752 26941.2437 3185.1851 328670851 pmoa Carbon Cycling Methane Methane oxidation uncultured candidate division NC10 bacterium superkingdom:Bacteria; 4289.5214 4289.5214 7707.2046 3328.5824 296850871 amyA Carbon Cycling Carbon degradation Starch Meiothermus silvanus DSM 9946 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus silvanus; 2654.4834 2654.4834 26419.2056 375267033 ppx Phosphorus Polyphosphate degradation NA Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4381.7121 4381.7121 37125.8541 56201265 protease_serine_fungi Carbon Cycling Carbon degradation protein Fusarium oxysporum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;genus:Fusarium; 3835.8486 3835.8486 398827655 catb Organic Remediation Aromatics BTEX and related aromatics Phyllobacterium sp. YR531 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Phyllobacterium; 2596.617 2596.617 6905.4704 2682.5065 332112583 PRK Carbon Cycling Carbon fixation Calvin cycle Rubrivivax benzoatilyticus JA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 1886.3769 1886.3769 4968.1372 6115.6282 163259434 one_ring_12diox Organic Remediation Aromatics Other aromatics Bordetella petrii superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella; 6076.1305 6076.1305 332667539 amyA Carbon Cycling Carbon degradation Starch Haliscomenobacter hydrossis DSM 1100 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; 5378.5252 5378.5252 5134.4969 8764.6401 3266.3454 3721.9217 148531989 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus reuteri DSM 20016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus reuteri; 5373.6977 5373.6977 363423711 cpnc Organic Remediation Other Hydrocarbons NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 2015.7015 2015.7015 11668.5979 14789.2448 3458.817 373468424 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium oral taxon 082 str. F0431 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;species:Lachnospiraceae bacterium oral taxon 082; 2704.2489 2704.2489 333735084 dsra Sulfur sulfite reduction NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 15709.0199 15709.0199 3241.4239 208970320 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2703.6548 2703.6548 5216.1454 221735168 ppk Phosphorus Polyphosphate synthesis NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 43192.8115 43192.8115 222099377 ara Carbon Cycling Carbon degradation Hemicellulose Thermotoga neapolitana DSM 4359 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga neapolitana; 31863.9124 31863.9124 3820519 one_ring_23diox Organic Remediation Aromatics Other aromatics Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2251.4959 2251.4959 325302138 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 1991.3332 1991.3332 398858993 dehh109 Organic Remediation Chlorinated solvents NA Pseudomonas sp. GM79 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 13528.6163 13528.6163 3433.6726 239835978 aoxb Metal Homeostasis Arsenic Detoxification Sinorhizobium sp. GW3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 2198.0075 2198.0075 9283.8487 10145.2717 8611.2485 12657483 nifh Nitrogen Nitrogen fixation NA Paenibacillus durus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2065.344 2065.344 359350766 amyA Carbon Cycling Carbon degradation Starch Sphaerochaeta pleomorpha str. Grapes superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 2439.3086 2439.3086 4123.2535 7681.1999 378737127 mcra Carbon Cycling Methane Methanogenesis Methanosaeta pelagica superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta; 4940.1932 4940.1932 10799.2552 4598.5577 81300231 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus elongatus PCC 7942 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus;species:Synechococcus elongatus; 4855.0923 4855.0923 29675.937 170139661 ppx Phosphorus Polyphosphate degradation NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 4206.0646 4206.0646 6511.4422 2778.9583 164425151 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 8350.2852 8350.2852 317154368 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Desulfovibrio aespoeensis Aspo-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio aespoeensis; 3331.2121 3331.2121 56858.7851 2247.6083 336391335 terc Metal Homeostasis Tellurium Detoxification Lactobacillus coryniformis subsp. torquens KCTC 3535 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 1906.3678 1906.3678 1687.0342 157404644 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 2012.8775 2012.8775 336281786 arsc Metal Homeostasis Arsenic Detoxification Idiomarina sp. A28L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina; 3590.032 3590.032 345901702 phn Organic Remediation Herbicides related compound NA Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 5656.8455 5656.8455 5205.852 3009.7097 323536638 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12609.6779 12609.6779 4305.5269 333374293 nira Nitrogen Assimilatory N reduction NA Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 4003.569 4003.569 9084.6467 116669483 terc Metal Homeostasis Tellurium Detoxification Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4767.2899 4767.2899 7190.8523 5865.6868 7390.8588 2847.7172 3208.6961 82410435 urec Nitrogen Ammonification NA Nitrosospira multiformis ATCC 25196 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira;species:Nitrosospira multiformis; 2146.1264 2146.1264 18950.4854 358638409 badi Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. KH32C superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 13749.3001 13749.3001 261337340 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 7290.4501 7290.4501 1623.0106 325546356 RgaE Carbon Cycling Carbon degradation Pectin Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 6969.7963 6969.7963 269103948 TIM Carbon Cycling Carbon fixation Calvin cycle Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 3097.1202 3097.1202 389931828 xyll Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 3296.5368 3296.5368 6439.765 3722.0446 238599563 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4335.9353 4335.9353 6989.3607 36092.4266 46120402 RgaE Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 2904.0156 2904.0156 2334.6283 4927.4521 226346652 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8655.13 8655.13 359799482 nosz Nitrogen Denitrification NA Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 2177.4344 2177.4344 4468.2346 6497.2678 327377077 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 1772.2185 1772.2185 87281004 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2526.7799 2526.7799 4164.1793 19986.8375 89512376 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2208.6191 2208.6191 3215.6933 66322.5759 4775.4624 2702.3858 13422273 xylanase Carbon Cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 3710.9003 3710.9003 16325.6362 3879.1763 3739.546 2252.8184 3341.6627 5345.8137 197713143 catechol_b Organic Remediation Aromatics Other aromatics Streptomyces sviceus ATCC 29083 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces sviceus; 12292.6663 12292.6663 160880769 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 2822.8421 2822.8421 6532.1906 332014894 xyla Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3643.5565 3643.5565 8799.1374 4633575 nosz Nitrogen Denitrification NA uncultured bacterium 696T superkingdom:Bacteria; 2507.1425 2507.1425 3825.8797 142509 cda Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5940.0368 5940.0368 47292.3518 7451.2735 407018841 dehh109 Organic Remediation Chlorinated solvents NA Salimicrobium sp. MJ3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Salimicrobium; 2450.1373 2450.1373 77378515 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2918.7819 2918.7819 397167929 trze Organic Remediation Herbicides related compound NA Enterobacter radicincitans DSM 16656 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Kosakonia;species:Kosakonia radicincitans; 5064.1634 5064.1634 380695254 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 2565.9091 2565.9091 290469663 phenol_oxidase Carbon Cycling Carbon degradation Lignin Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 2481.9425 2481.9425 113473705 catb Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. KA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3417.8064 3417.8064 281306308 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 3848.535 3848.535 7143.2071 184193009 tehb Metal Homeostasis Tellurium Detoxification Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 4825.8473 4825.8473 643636 pcpe Organic Remediation Herbicides related compound NA Burkholderia cepacia superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2835.449 2835.449 324098561 urec Nitrogen Ammonification NA Pseudomonas sp. TJI-51 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5246.8341 5246.8341 20333.657 2995.7646 90954625 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2539.3972 2539.3972 4292.5698 28848925 toma Organic Remediation Aromatics BTEX and related aromatics Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 38869.2882 38869.2882 9850.7876 7436.0592 30840.578 14177.0462 145351091 nitrite_reductase_protist Nitrogen Assimilation NA Ostreococcus lucimarinus CCE9901 NA 1898.4099 1898.4099 5587 2356.487 1932.1785 309775100 amyA Carbon Cycling Carbon degradation Starch Erysipelotrichaceae bacterium 3_1_53 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 4738.5443 4738.5443 78185824 urec Nitrogen Ammonification NA Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2028.5024 2028.5024 2856.6651 73670092 dsra Sulfur sulfite reduction NA Methanosarcina barkeri str. Fusaro superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina barkeri; 4333.5716 4333.5716 4252.0481 2056.1147 4868.94 3272.2834 46520035 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8601.6124 8601.6124 2084.4435 323365934 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5104.0283 5104.0283 3358.6369 3923.9671 2613.7822 239579637 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 3180.4289 3180.4289 257386137 amyA Carbon Cycling Carbon degradation Starch Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 2316.9931 2316.9931 4661.2198 5522.4599 5272.1857 254029810 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2794.3962 2794.3962 9449.9773 125863155 dsra Sulfur sulfite reduction NA Methanoculleus marisnigri JR1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoculleus;species:Methanoculleus marisnigri; 5074.0824 5074.0824 4568.0808 3798.7033 4574.1058 351716812 arsc Metal Homeostasis Arsenic Detoxification Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 2184.1694 2184.1694 1877.5934 50542740 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3168.6405 3168.6405 170728661 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Shewanella woodyi ATCC 51908 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella woodyi; 2309.6891 2309.6891 5949.6461 4098.4823 4806.7705 2529.2123 2831.8287 2410.5725 301099321 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 2204.9113 2204.9113 8494.2547 2743.9609 326695099 cpna Organic Remediation Other Hydrocarbons NA Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 193664.9378 193664.9378 327184144 arylest Organic Remediation Aromatics Other aromatics Lactobacillus amylovorus GRL1118 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylovorus; 2618.6687 2618.6687 133778534 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2952.3574 2952.3574 6545.6346 308188224 phn Organic Remediation Herbicides related compound NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 3017.4699 3017.4699 9047.5133 3332.7794 12172.1 5982.2996 5089.2596 189340510 amyA Carbon Cycling Carbon degradation Starch Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 2532.3732 2532.3732 88702781 dextranase_fungi Carbon Cycling Carbon degradation sucrose Penicillium minioluteum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces; 14633.0842 14633.0842 22323646 invertase_fungi Carbon Cycling Carbon degradation sucrose Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 6037.37 6037.37 115401988 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5879.3445 5879.3445 6966.9894 219564813 arylest Organic Remediation Aromatics Other aromatics uncultured marine bacterium superkingdom:Bacteria; 2285.1311 2285.1311 2210.9057 8146.0597 126567220 pmoa Carbon Cycling Methane Methane oxidation uncultured type I methanotroph superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 4140.0284 4140.0284 380694580 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 3153.1768 3153.1768 193160564 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 3437.7932 3437.7932 224025662 ppx Phosphorus Polyphosphate degradation NA Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 3200.2167 3200.2167 254415672 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 25644.9962 25644.9962 1847.216 256744312 xyla Carbon Cycling Carbon degradation Hemicellulose Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 7797.808 7797.808 3756.7307 2218.3233 119962834 hbh Organic Remediation Aromatics BTEX and related aromatics Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 12154.7569 12154.7569 292815353 nitro Organic Remediation Others NA Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 2071.0237 2071.0237 398868482 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. GM78 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 15195.2131 15195.2131 77820038 nirs Nitrogen Denitrification NA uncultured organism 21338.7746 21338.7746 2362.5528 1931.6534 145343562 mg_chelatase Secondary metabolism Pigments Chlorophyll Ostreococcus lucimarinus CCE9901 NA 22699.6725 22699.6725 5270.5674 332798314 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Tepidanaerobacter sp. Re1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Tepidanaerobacter; 2866.48 2866.48 145205124 soxY Sulfur Sulfur Oxidation NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 40324.326 40324.326 217976659 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 12165.9711 12165.9711 333736707 ppx Phosphorus Polyphosphate degradation NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 4319.0564 4319.0564 4222.4717 4587.3506 4841.8174 76477.4239 2568.2672 300102852 phenol_oxidase Carbon Cycling Carbon degradation Lignin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3633.8869 3633.8869 4097.6487 7905.2284 119462149 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 2045.9408 2045.9408 4197.9747 38906705 chnc Organic Remediation Other Hydrocarbons NA Rhodococcus sp. TK6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2532.7425 2532.7425 5406.6756 2133.999 3217.3823 2835.792 99030527 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 2162.1999 2162.1999 218173649 TIM Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3085.0644 3085.0644 147743354 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2351.8926 2351.8926 4884.1915 3381.3063 260161448 arsc Metal Homeostasis Arsenic Detoxification Microbacterium sp. A33 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 2188.4343 2188.4343 256560838 xylanase Carbon Cycling Carbon degradation Hemicellulose Brachybacterium faecium DSM 4810 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Dermabacteraceae;genus:Brachybacterium;species:Brachybacterium faecium; 1870.6758 1870.6758 124488197 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2907.9911 2907.9911 4137.1203 163855706 one_ring_12diox Organic Remediation Aromatics Other aromatics Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 5120.2052 5120.2052 237752116 pchcf Organic Remediation Aromatics BTEX and related aromatics Helicobacter winghamensis ATCC BAA-430 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter winghamensis; 2852.2689 2852.2689 164598130 exoglucanase Carbon Cycling Carbon degradation Cellulose Chlorophyllum molybdites superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Agaricaceae;genus:Chlorophyllum; 2224.4866 2224.4866 3723.0437 4008.829 5054.1725 118405278 nosz Nitrogen Denitrification NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3270.4282 3270.4282 225001284 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7610.7233 7610.7233 2155.1513 326551047 pme Carbon Cycling Carbon degradation Pectin Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 3729.4496 3729.4496 113461649 napa Nitrogen Dissimilatory N reduction NA Haemophilus somnus 129PT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Histophilus;species:Histophilus somni; 3286.0952 3286.0952 10293.954 123967448 bphF1 Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 9073.9424 9073.9424 373947232 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 2307.7491 2307.7491 319418526 SoxA Sulfur Sulfur Oxidation NA Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 2124.6193 2124.6193 6288.5411 372474799 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5965.6254 5965.6254 5846.0261 46517945 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4355.7339 4355.7339 313115345 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium cf. prausnitzii KLE1255 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 2245.0257 2245.0257 4366.3568 301798653 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11541.8255 11541.8255 4755.5477 2739.1617 5309.5397 2225.0249 297585377 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 1856.5132 1856.5132 359761318 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens F113 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 2242.1562 2242.1562 1784.1072 383791521 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 2222.5393 2222.5393 112800901 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter concisus 13826 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter concisus; 17258.4339 17258.4339 9641.5495 154758535 dsra Sulfur sulfite reduction NA uncultured Desulfovibrio sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 12874.3663 12874.3663 5954.1438 4032.4891 12359.4009 4972.66 13503.7477 313628090 fosx Virulence Antibiotic resistance Degradation Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 2178.2158 2178.2158 386376215 nrfa Nitrogen Dissimilatory N reduction NA Prevotella intermedia 17 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella intermedia; 6346.9056 6346.9056 5550.9827 3094.1715 363621018 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus smithii 7_3_47FAA superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus smithii; 2526.5977 2526.5977 325546273 endoglucanase Carbon Cycling Carbon degradation Cellulose Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 3553.8888 3553.8888 4304.258 3043.4499 160916347 cellobiase Carbon Cycling Carbon degradation Cellulose Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichi;order:Erysipelotrichales;family:Erysipelotrichaceae;species:Eubacterium dolichum; 3746.9016 3746.9016 5942.2804 10138.5829 223714262 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2405.9923 2405.9923 2683.0545 3978.7647 304396368 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 56357.8345 56357.8345 100083.631 113904180 amyA Carbon Cycling Carbon degradation Starch Salinispora tropica CNB-440 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Salinispora;species:Salinispora tropica; 5736.2307 5736.2307 218240628 amyA Carbon Cycling Carbon degradation Starch Alicyclobacillus acidocaldarius LAA1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;species:Alicyclobacillus acidocaldarius; 2252.632 2252.632 335365432 amyA Carbon Cycling Carbon degradation Starch Thermotoga thermarum DSM 5069 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga thermarum; 2339.2895 2339.2895 317423319 aoxb Metal Homeostasis Arsenic Detoxification Ensifer adhaerens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Ensifer; 4945.2062 4945.2062 373549457 linb Organic Remediation Pesticides related compound NA Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 2535.518 2535.518 160891972 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 2850.2947 2850.2947 3257353 rubisco Carbon Cycling Carbon fixation Calvin cycle Pyrococcus horikoshii OT3 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Pyrococcus;species:Pyrococcus horikoshii; 2228.8855 2228.8855 1768.5397 317169852 PRK Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium ciceri biovar biserrulae WSM1271 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium ciceri; 1952.622 1952.622 10054.1653 4322.8891 4689.1815 398043285 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3525.9197 3525.9197 1997.677 5565.1552 157362172 exoglucanase Carbon Cycling Carbon degradation Cellulose Polyporus arcularius superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Polyporus; 2117.071 2117.071 288314822 amyA Carbon Cycling Carbon degradation Starch Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 2875.575 2875.575 6393.6056 8978.9882 4221.1226 3534.771 228737063 amyA Carbon Cycling Carbon degradation Starch Bacillus cereus AH1272 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 2457.7502 2457.7502 4328.4013 398347710 linb Organic Remediation Pesticides related compound NA Leptospira broomii str. 5399 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 8879.4368 8879.4368 2555.904 334891383 terc Metal Homeostasis Tellurium Detoxification Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 6697.8327 6697.8327 3368.7117 254480417 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2539.6111 2539.6111 2149.4779 385763545 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium ws101A12 superkingdom:Bacteria; 5508.1884 5508.1884 3066.1415 190333369 ara Carbon Cycling Carbon degradation Hemicellulose Geobacillus stearothermophilus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5630.9498 5630.9498 29461.5158 3276.4671 378747752 aps_apra Sulfur adenylylsulfate reductase NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 1914.5191 1914.5191 4268.6574 407428966 nagg Organic Remediation Aromatics Aromatic carboxylic acid Nitratireductor indicus C115 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Nitratireductor;species:Nitratireductor indicus; 3077.1451 3077.1451 84686595 phdk Organic Remediation Polycyclic aromatics NA Maritimibacter alkaliphilus HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 6829.4425 6829.4425 255509970 chitinase Carbon Cycling Carbon degradation Chitin Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 14984.6936 14984.6936 242220117 phenol_oxidase Carbon Cycling Carbon degradation Lignin Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 2514.1707 2514.1707 374413670 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5268.8933 5268.8933 6099.5859 5648.0936 83634892 cda Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 3276.4053 3276.4053 5557.9955 2913.5391 157151139 amyA Carbon Cycling Carbon degradation Starch Streptococcus gordonii str. Challis substr. CH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus gordonii; 12058.7069 12058.7069 5495.8076 152997165 cysI Sulfur Other NA Marinomonas sp. MWYL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 8557.7538 8557.7538 3012.1957 334731085 ppk Phosphorus Polyphosphate synthesis NA Ramlibacter tataouinensis TTB310 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Ramlibacter;species:Ramlibacter tataouinensis; 5029.1719 5029.1719 6818.9528 296186930 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 2744.5928 2744.5928 259479381 rgl Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2695.8235 2695.8235 13795.1541 1893.3349 355372480 amyA Carbon Cycling Carbon degradation Starch Selenomonas infelix ATCC 43532 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas infelix; 3986.569 3986.569 355543389 glucoamylase Carbon Cycling Carbon degradation Starch Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 2004.344 2004.344 404425024 bphF1 Organic Remediation Aromatics Polycyclic aromatics Mycobacterium fortuitum subsp. fortuitum DSM 46621 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium fortuitum; 3240.8391 3240.8391 4968.9995 5680.1688 4867.1555 5082.4874 399540893 bphd Organic Remediation Aromatics Polycyclic aromatics Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 8547.9915 8547.9915 3693.761 254444859 xylanase Carbon Cycling Carbon degradation Hemicellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 11039.0267 11039.0267 2658.2526 4157.169 4800.542 2756.0245 219862588 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 36214.2589 36214.2589 4642.3457 332592210 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2696.3368 2696.3368 4319.7975 4988.1961 325268132 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Kingella denitrificans ATCC 33394 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella denitrificans; 3146.1896 3146.1896 118170433 cellobiase Carbon Cycling Carbon degradation Cellulose Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 2281.0248 2281.0248 89087992 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 16518.7781 16518.7781 84375761 amyA Carbon Cycling Carbon degradation Starch Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 4184.0599 4184.0599 13911.2635 90312.5221 288924166 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2342.0782 2342.0782 168334722 chitinase Carbon Cycling Carbon degradation Chitin Epulopiscium sp. 'N.t. morphotype B' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Epulopiscium; 25451.6825 25451.6825 8559.0487 22820.246 303278031 terc Metal Homeostasis Tellurium Detoxification Micromonas pusilla CCMP1545 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas;species:Micromonas pusilla; 1986.8168 1986.8168 6655.3995 2619.5413 6044.5683 4609.2797 7913.8643 5371.8762 88643146 dsra Sulfur sulfite reduction NA uncultured prokaryote 5237.9285 5237.9285 8201.5049 2877.6722 15765.6276 4738.1827 2188.5651 2235.4167 238750275 amyA Carbon Cycling Carbon degradation Starch Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 4684.0609 4684.0609 6716.9843 2287.5057 6746.7434 7376.7898 128657.9579 56476744 ebdabc Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 20260.7549 20260.7549 374372638 xyla Carbon Cycling Carbon degradation Hemicellulose Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 2095.0889 2095.0889 4169.5103 3267.6907 6179.8594 1706.7997 2407.9866 3042.3296 383752921 amyA Carbon Cycling Carbon degradation Starch Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 4998.7521 4998.7521 83362844 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodobacter sphaeroides ATCC 17025 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 30367.0994 30367.0994 151357501 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2235.605 2235.605 247542341 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4530.7629 4530.7629 6421.2437 3577.2423 371582057 narg Nitrogen Denitrification NA Corynebacterium diphtheriae INCA 402 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 18729.8868 18729.8868 375081539 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11228.1542 11228.1542 8244.2398 4383.6165 2298.1377 5043.2814 229489948 limeh Carbon Cycling Carbon degradation Terpenes Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 5170.072 5170.072 333978082 xylj Organic Remediation Aromatics BTEX and related aromatics Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 9132.8741 9132.8741 341837053 amoa Nitrogen Nitrification NA uncultured thaumarchaeote superkingdom:Archaea;phylum:Thaumarchaeota; 2149.8862 2149.8862 11011.7041 44785.6896 164456204 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 2594.467 2594.467 6605.207 218675326 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli GR56 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 2140.5396 2140.5396 9518.1023 2229.3821 12059.0609 314971415 mer Metal Homeostasis Mercury Detoxification Propionibacterium acnes HL037PA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 2429.4706 2429.4706 5717.1292 67901610 phospholipase_B_fungi virulence degradation NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2219.8191 2219.8191 188022531 cysJ Sulfur Reduction NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 1958.2303 1958.2303 4562.6089 221736529 urec Nitrogen Ammonification NA Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 2674.6508 2674.6508 6957.3678 12353.7394 4548.8998 1913.9807 89512918 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2204.2588 2204.2588 169618900 pme_Cdeg Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 27824.173 27824.173 1942.7602 124004972 alkh Organic Remediation Other Hydrocarbons NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 2654.9768 2654.9768 149129065 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 2081.1321 2081.1321 154305595 sdsa Organic Remediation Others NA Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 3837.9371 3837.9371 363993704 chnb Organic Remediation Other Hydrocarbons NA Mycobacterium abscessus subsp. bolletii BD superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium abscessus; 3456.6292 3456.6292 118424311 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1840.482 1840.482 154251592 limeh Carbon Cycling Carbon degradation Terpenes Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 2154.5323 2154.5323 5942.6194 2534.626 9539.675 2975.5725 76058244 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4976.2858 4976.2858 339501690 gdh Nitrogen Ammonification NA Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 2020.9664 2020.9664 6962.582 62432965 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2595.1688 2595.1688 4316.5106 28299.8431 906740.8194 8370.9275 5551.8545 142850039 cda Carbon Cycling Carbon degradation Starch Aeromonas salmonicida subsp. salmonicida A449 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas salmonicida; 8440.9668 8440.9668 404632507 nfsa_2 Organic Remediation Aromatics Nitoaromatics Aeromonas hydrophila SSU superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Aeromonadaceae;genus:Aeromonas;species:Aeromonas hydrophila; 2546.7073 2546.7073 4615.8043 357596851 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Novosphingobium pentaromativorans US6-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium pentaromativorans; 11661.4621 11661.4621 6390.6854 302393980 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 15462.9438 15462.9438 329575915 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 4199.4329 4199.4329 4852.4352 5165.9709 4390.1205 5124.6461 2341.642 2739.3812 224367449 gdh Nitrogen Ammonification NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 6005.6771 6005.6771 53804130 pmoa Carbon Cycling Methane Methane oxidation Methylococcus capsulatus str. Bath superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylococcus;species:Methylococcus capsulatus; 7926.398 7926.398 334889835 amyA Carbon Cycling Carbon degradation Starch Haloplasma contractile SSD-17B superkingdom:Bacteria;order:Haloplasmatales;family:Haloplasmataceae;genus:Haloplasma;species:Haloplasma contractile; 4381.1986 4381.1986 165880043 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 10941.7545 10941.7545 2577.0211 5565.1443 345872302 tktA Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 2014.1234 2014.1234 11736.7822 6536.4003 3689.5443 6363.5137 1684.4285 91697012 phtb Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 2354.5617 2354.5617 198256814 Sir Sulfur sulfite reduction NA Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 66639.9723 66639.9723 2907.8219 4938.7569 4747.8813 5009.4711 3093.1108 6549.2586 359767741 ppk Phosphorus Polyphosphate synthesis NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 3603.4794 3603.4794 327197156 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2386.5953 2386.5953 9233.2703 266621103 cda Carbon Cycling Carbon degradation Starch Clostridium hathewayi DSM 13479 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hathewayi; 3138.8557 3138.8557 238761602 cueo Metal Homeostasis Copper Detoxification Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 5542.0596 5542.0596 3467.2978 4379.9967 5023.3145 208010872 tktA Carbon Cycling Carbon fixation Calvin cycle Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 8116.7525 8116.7525 214032626 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. AM4 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 2024.3439 2024.3439 305857276 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4598.229 4598.229 3920.1932 5823.5581 9328.0379 87283547 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6263.2658 6263.2658 5597.4059 227069483 narb Nitrogen Assimilatory N reduction NA uncultured archaeon superkingdom:Archaea; 2783.2796 2783.2796 2612.6202 9658.8265 332141100 phytase Phosphorus Phytic acid hydrolysis NA Alteromonas macleodii str. 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 4163.4152 4163.4152 149279468 amyA Carbon Cycling Carbon degradation Starch Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 2298.5684 2298.5684 3408.6728 5908.5748 5657.1647 4176.6458 2477.8607 6405.8458 320353361 arsm Metal Homeostasis Arsenic Detoxification Desulfobulbus propionicus DSM 2032 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus;species:Desulfobulbus propionicus; 15801.4421 15801.4421 196190760 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2281.2261 2281.2261 8297.3508 108771092 tfda Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 2196.3574 2196.3574 6723.7231 4948.6736 6858.8108 7490.4011 6372.0248 2916.8617 4173.1979 2927.8416 11034.2085 295982804 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 2067.2901 2067.2901 6410.6241 5726.4409 2207.1599 5664.2944 238836974 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 28718.6445 28718.6445 323366070 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 9143.8575 9143.8575 164456110 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3712.9298 3712.9298 291422095 nitro Organic Remediation Others NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 5727.8003 5727.8003 2119.4058 40253061 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3090.373 3090.373 3163.3671 4799.776 2878.1366 2192.8384 323494204 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 5152.6888 5152.6888 146420599 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Meyerozyma guilliermondii ATCC 6260 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Meyerozyma;species:Meyerozyma guilliermondii; 2434.2145 2434.2145 283818173 catechol_b Organic Remediation Aromatics Other aromatics Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 2451.8063 2451.8063 109290316 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2366.2474 2366.2474 254490695 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methylophaga thiooxidans DMS010 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga thiooxydans; 6183.0827 6183.0827 6159.1666 5236.9239 304398913 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Pantoea sp. aB superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 2094.7899 2094.7899 330688072 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2132.7122 2132.7122 373548151 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 3029.2854 3029.2854 3423.1 300789644 endoglucanase Carbon Cycling Carbon degradation Cellulose Amycolatopsis mediterranei U32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 7783.7807 7783.7807 170721161 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 6414.784 6414.784 8644.6064 2107.6758 390521043 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ornithobacterium rhinotracheale DSM 15997 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Ornithobacterium;species:Ornithobacterium rhinotracheale; 4374.7629 4374.7629 6652.4225 109452398 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 1895.4463 1895.4463 20909.3414 225793609 chitinase Carbon Cycling Carbon degradation Chitin Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 2046.747 2046.747 228739106 amyA Carbon Cycling Carbon degradation Starch Bacillus cereus AH1272 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 12928.364 12928.364 144899742 terc Metal Homeostasis Tellurium Detoxification Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 2716.8553 2716.8553 8857.1661 3540.4539 2402.663 384525361 norb Nitrogen Denitrification NA Methylacidiphilum fumariolicum SolV superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum fumariolicum; 1734.6175 1734.6175 37199511 chitinase Carbon Cycling Carbon degradation Chitin Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 8311.2516 8311.2516 189440601 ara Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 5233.8225 5233.8225 93103296 linc Organic Remediation Pesticides related compound NA Sphingomonas sp. BHC-A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2096.0963 2096.0963 2418.327 114308197 cysJ Sulfur Reduction NA Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 3387.3811 3387.3811 2424.0684 270298196 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 3455.341 3455.341 374988278 ppx Phosphorus Polyphosphate degradation NA Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 3832.6404 3832.6404 3924.106 2318.8919 6084.7716 302535228 xylg Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. C superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2220.8757 2220.8757 1871461 cumd Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3984.9013 3984.9013 315638491 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 2205.6646 2205.6646 46358545 p450aro Organic Remediation Aromatics polycyclic aromatics Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 2631.0866 2631.0866 158450464 arsc Metal Homeostasis Arsenic Detoxification Coprococcus eutactus ATCC 27759 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus;species:Coprococcus eutactus; 5715.5068 5715.5068 377540955 amyA Carbon Cycling Carbon degradation Starch Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 7267.276 7267.276 224020156 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides coprophilus DSM 18228 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprophilus; 2939.8416 2939.8416 222353995 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 7921.0875 7921.0875 214031842 dmdA Sulfur DMSP degradation NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4309.4537 4309.4537 3229.1581 3370.0137 4196.3041 15952.5633 11080.7282 27569.5806 5154.8416 4498.7345 46307928 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 30784.8686 30784.8686 17385133 narg Nitrogen Denitrification NA Erwinia sp. Lgg20.9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia; 19818.1969 19818.1969 296426165 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 1953.6911 1953.6911 119116050 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2426.1052 2426.1052 77969957 alkb Organic Remediation Other Hydrocarbons NA Burkholderia sp. 383 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6354.3856 6354.3856 4041.2533 5941.587 1143603 xylanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga neapolitana superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga; 4538.6394 6414.0521 38490397 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 3983.4524 354812553 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium citroniae WAL-17108 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium citroniae; 3012.1901 295441635 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Burkholderia sp. CCGE1002 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13547.2503 19168808 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio harveyi superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 19413.2942 6289.7852 35972.6166 260614134 PRK Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 4102.3913 2174.6486 2008.1087 4656.5514 114341742 amyA Carbon Cycling Carbon degradation Starch Maricaulis maris MCS10 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Maricaulis;species:Maricaulis maris; 4944.9036 2382.9818 1870.2351 88711661 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacteriales bacterium HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 3156.0255 9541.6468 1950.9629 14389247 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3270.4915 2167.2725 4976.0054 309261247 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verrucomicrobiaceae bacterium CNC16 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae; 32648.7472 76875442 chne Organic Remediation Other Hydrocarbons NA Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 2551.5501 5091.4342 8128.5829 10721.7453 380695859 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 28341.5323 388609916 bphF1 Organic Remediation Aromatics Polycyclic aromatics Acinetobacter sp. HA superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 7708.5786 5830.9542 4182.7597 4164.8133 115433526 amyA Carbon Cycling Carbon degradation Starch Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6925.5437 1894.9465 389837817 narb Nitrogen Assimilatory N reduction NA Microcystis sp. T1-4 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis; 38284.4239 22835.8514 377578823 terc Metal Homeostasis Tellurium Detoxification Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 4450.5956 1980.4962 3713.6768 6425.3094 336264045 axe Carbon Cycling Carbon degradation Cellulose Sordaria macrospora k-hell superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria;species:Sordaria macrospora; 2575.7449 2484.9914 296131750 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermincola potens JR superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Thermincola;species:Thermincola potens; 23141.5681 73486699 ara Carbon Cycling Carbon degradation Hemicellulose Arthrobacter aurescens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 19423.0746 7001.3129 154104637 cda Carbon Cycling Carbon degradation Starch uncultured microorganism 2797.4973 7304.0403 1694.0377 119958177 tfdb Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 2879.2127 219676268 vgb Virulence Antibiotic resistance Degradation gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 83314.5117 3038.7454 49188.6324 6230.4232 88643064 dsra Sulfur sulfite reduction NA uncultured prokaryote 41897.8875 64519.9119 270298542 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 2578.7099 2358.533 290470198 cysI Sulfur Other NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 3017.5535 21973.0999 3829.344 2948.3818 71038932 mer Metal Homeostasis Mercury Detoxification Psychrobacter arcticus 273-4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter arcticus; 6603.8202 92064.0762 118592508 FBPase Carbon Cycling Carbon fixation Calvin cycle Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 3013.141 4097.342 5612.5667 2349.9471 118135440 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium novyi NT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium novyi; 5345.5964 4090.9961 161366923 arsc Metal Homeostasis Arsenic Detoxification Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 4817.7075 6505.9935 2486.882 338779575 nitro Organic Remediation Others NA Achromobacter xylosoxidans AXX-A superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 16191.5913 87024.6054 7093.2951 4240.6476 25900704 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2690.8731 330836136 pme Carbon Cycling Carbon degradation Pectin Spirochaeta coccoides DSM 17374 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta coccoides; 3813.7357 7092.9429 2713.6653 118438387 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 44889.2338 325956779 ppx Phosphorus Polyphosphate degradation NA Lactobacillus acidophilus 30SC superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidophilus; 14136.9683 192361555 amyA Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 9668.5728 199594013 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2738.2152 212538147 rgl Carbon Cycling Carbon degradation Pectin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 2522.5294 2996624 xyll Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 4075.6685 4771.1268 3782.1046 6954.0465 6944.2028 4709.9007 6199.1061 3209.0074 5291.8352 367474264 atzd Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS 285 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 79857.1858 3580.9557 43012.7189 5907.4681 210633280 cda Carbon Cycling Carbon degradation Starch Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 3582.0004 3437.8468 375159161 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum oguniense TE7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum oguniense; 3292.6767 219795516 pec_Cdeg Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 19492.9853 15793.2451 46307878 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 42526.3005 3493.3604 269119660 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Sebaldella termitidis ATCC 33386 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Sebaldella;species:Sebaldella termitidis; 3761.939 3481.0699 5215.9963 2894.2005 322411837 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 10134.3225 4460.5974 9315.3704 25872.869 346644377 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3183.5879 2242.1586 322705060 mer Metal Homeostasis Mercury Detoxification Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 11630.9909 141736.9384 410085956 nfsb_2 Organic Remediation Aromatics Nitoaromatics Morganella morganii SC01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Morganella;species:Morganella morganii; 8407.2221 6771.1603 5959.9593 10516.3283 84393726 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 319190.4726 24515.693 3845.1462 4969.4885 34619.8316 6213.6396 299065979 cysI Sulfur Other NA Ralstonia solanacearum CMR15 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 3084.1634 3054.7875 4236.3817 3640.8331 2734.9486 8443.1004 4837.5539 2136.5503 2440.0145 3061.1246 2311.0262 5742.8389 398363825 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 7246.9905 11424.6226 3053.1102 298528250 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 2621.7147 6439.3896 3761.6266 5350.2677 2585.1806 4997.6195 2048.4783 7239.1805 377579101 amyA Carbon Cycling Carbon degradation Starch Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 3464.9543 2766.9558 52425304 cysI Sulfur Other NA Mannheimia succiniciproducens MBEL55E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Basfia;species:Mannheimia succiniciproducens; 5184.2842 8850.5141 110667834 gdh Nitrogen Ammonification NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 67756.7105 19129.7035 27291.745 13342.7152 177102.0483 9918.7694 34578.1551 26782.0995 36317.7681 48004.3002 12397.2711 24333.3928 14095.5338 116200347 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 2757.5379 22796260 nirs Nitrogen Denitrification NA uncultured bacterium wA20 superkingdom:Bacteria; 11213.2541 8362.3074 3146.6773 255938415 RgaE Carbon Cycling Carbon degradation Pectin Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 2833.8683 27571.2036 322118492 Sir Sulfur sulfite reduction NA Actinobacillus ureae ATCC 25976 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus ureae; 4162.8993 4041.7958 2163.8378 2447.9018 2230.2274 4711.2895 9053.2996 2153.6017 2709.042 3976.5503 119397651 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3092.2515 3366.3617 2306.5516 2946.5165 196228649 chitinase Carbon Cycling Carbon degradation Chitin Chthoniobacter flavus Ellin428 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Spartobacteria;genus:Chthoniobacter;species:Chthoniobacter flavus; 3423.0087 3425.0212 9349.3967 169771801 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 16375.3322 6254.4022 6273.2362 3643.0619 48813.5579 2879.3887 13855.6444 8052.6217 9801.7296 12194.1773 3104.0494 7794.2358 3337.583 326548666 RgaE Carbon Cycling Carbon degradation Pectin Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 2905.6856 219669221 amyA Carbon Cycling Carbon degradation Starch Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2802.8877 334687508 catb Organic Remediation Aromatics BTEX and related aromatics Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 3266.5828 46916.7352 55845973 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7850.9639 3437.263 12962.757 82618405 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5674.3938 10665.4149 2106.0637 7594.2821 1997.4321 5286.0751 237756199 aoxb Metal Homeostasis Arsenic Detoxification Sulfurihydrogenibium yellowstonense SS-5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium;species:Sulfurihydrogenibium yellowstonense; 2730.2837 5272.5044 2036.3522 323472701 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4884.369 2216.4306 5864.1001 254283585 SoxC Sulfur Sulfur Oxidation NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Luminiphilus;species:Luminiphilus syltensis; 3955.6217 74421980 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 38561.0288 262273693 PRI Carbon Cycling Carbon fixation Calvin cycle Grimontia hollisae CIP 101886 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Grimontia;species:Grimontia hollisae; 2800.8639 221735753 xylanase Carbon Cycling Carbon degradation Hemicellulose Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 3255.1346 12724358 arsc Metal Homeostasis Arsenic Detoxification Lactococcus lactis subsp. lactis Il1403 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 3219.1615 4786.4295 4469.7793 6177.8908 3403.9538 6309.4972 7000.2502 3862.316 311741363 amie Organic Remediation Aromatics Other aromatics Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 4091.7605 8023.2332 6565.6011 5194.5855 10426.2244 8344.6408 7825.5839 2815.0496 7557.808 3600.0801 3214.2416 8324.4737 325111274 RgaE Carbon Cycling Carbon degradation Pectin Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 2744.2132 11186.9194 13813695 acaB_arch Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 2942.6283 308213027 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 2691.129 4486.0738 340786489 PRI Carbon Cycling Carbon fixation Calvin cycle Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 2641.2171 229544160 cysI Sulfur Other NA Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 4255.9164 308061922 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter pylori Cuz20 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pylori; 2774.8201 160937568 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 68690.3546 6799.8481 124260735 FBPase Carbon Cycling Carbon fixation Calvin cycle Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 74025.7063 2944.5041 220909789 PRK Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4678.8249 62198732 cellobiase Carbon Cycling Carbon degradation Cellulose Pectobacterium carotovorum subsp. carotovorum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 2691.1193 3627.6355 399545600 alkk Organic Remediation Others NA Marinobacter sp. BSs20148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 14715.4905 15308.0464 11699.7519 6446.2243 11620.7708 18090.6133 60476306 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3043.0182 6007.8448 10767.9351 122088458 napa Nitrogen Dissimilatory N reduction NA Yersinia enterocolitica subsp. enterocolitica 8081 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia enterocolitica; 243752.7761 3938.9248 189782.973 2890.4441 393177848 xyla Carbon Cycling Carbon degradation Hemicellulose Rhizobium leguminosarum bv. trifolii WSM2012 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 2475.253 558311 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 35870.6796 186684444 TIM Carbon Cycling Carbon fixation Calvin cycle Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 2728.4256 334135852 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4111.397 312111248 urec Nitrogen Ammonification NA Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 2816.4775 309783457 chnb Organic Remediation Other Hydrocarbons NA Ralstonia sp. 5_7_47FAA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 4305.4263 27804.7958 4336.6043 9055.6198 3157610 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 4006.6268 4243.0742 358029368 cysJ Sulfur Reduction NA Pseudoalteromonas sp. BSi20311 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 16296.807 8924.4886 77378415 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4132.0383 5997.5193 7028.3575 3545.4815 40741660 amyA Carbon Cycling Carbon degradation Starch Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 2842.6778 332968361 ara Carbon Cycling Carbon degradation Hemicellulose Desmospora sp. 8437 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Thermoactinomycetaceae;genus:Desmospora; 2630.9942 213013145 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11982.4239 8701.5723 3334.2004 12587.5394 46389801 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4231.7773 4466.0678 218174561 mer Metal Homeostasis Mercury Detoxification Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4153.7061 3342.8154 364003317 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 3393.0777 5227.1565 2422.3039 2410.8066 10061.3001 212537331 phytase Phosphorus Phytic acid hydrolysis NA Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 14802.0486 2658.0752 147848310 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 334211.8489 6900.3423 5546.4867 278271.0936 334092471 cda Carbon Cycling Carbon degradation Starch Desulfotomaculum ruminis DSM 2154 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum ruminis; 2811.647 5198.3179 304941385 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 18022.6197 387160092 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens A506 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 13623.3848 5446.4165 387129340 phytase Phosphorus Phytic acid hydrolysis NA Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 3185.1553 6106.3911 4206.855 5011.5322 10342.1595 4664.7125 6728.0996 1949.8516 5424.5752 244538474 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3167.7787 2514.0216 2093.671 18627.6788 86568078 mmox Carbon Cycling Methane Methane oxidation Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4874.4215 2772.0044 110638988 amyA Carbon Cycling Carbon degradation Starch Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 2557.6266 3722.488 9046.2199 6082.1729 2235.1293 117188607 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4455.0873 3303.2888 2008848.1238 336020046 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lachnospiraceae bacterium 2_1_58FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 3275.6668 198256396 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 3713.4375 242780701 cellobiase Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 3849.555 120613844 TIM Carbon Cycling Carbon fixation Calvin cycle Bartonella bacilliformis KC583 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella bacilliformis; 2923.6148 8526.3396 7618.8333 6232.882 328921808 SoxB Sulfur Sulfur Oxidation NA gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3604.2371 291449283 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces roseosporus NRRL 15998 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces filamentosus; 3563.3762 56708840 nosz Nitrogen Denitrification NA Silicibacter pomeroyi DSS-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;species:Ruegeria pomeroyi; 2474.4736 3693.291 2100.0413 30017.8141 151281782 arsc Metal Homeostasis Arsenic Detoxification Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 3338.2045 241363953 tktA Carbon Cycling Carbon fixation Calvin cycle Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 3334.4782 332978633 cysI Sulfur Other NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 3519.9228 11751.4752 371771384 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella dentalis DSM 3688 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella dentalis; 2654.207 5034.9595 8471.8885 6679.2625 1882.4283 3927.5889 281304866 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella timonensis CRIS 5C-B1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella timonensis; 2925.6621 2899.7524 311818588 nitrate_reductase Nitrogen N Assimilation NA Phytophthora infestans superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora; 4776.4705 6362.9131 44099.1507 15073911 B_lactamase_A Virulence Antibiotic resistance Degradation Sinorhizobium meliloti 1021 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 2991.4663 14031.3317 4946.8449 83952569 SoxV Sulfur Sulfur Oxidation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 3670.8128 3148.3747 375081319 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4334.405 48810 b_lactamase Virulence Antibiotic resistance Degradation Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 11881.5819 5196.5953 7546.323 38884999 hsp90_Stramenopiles Other Phylogenetic NA Spumella uniguttata superkingdom:Eukaryota;class:Chrysophyceae;order:Chromulinales;family:Chromulinaceae;genus:Spumella; 3725.1666 385675975 nagg Organic Remediation Aromatics Aromatic carboxylic acid Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 2883.6587 3751.1218 2144.0362 227466942 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas fluorescens Pf-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas protegens; 2733.5613 315622057 gdh Nitrogen Ammonification NA Pseudoramibacter alactolyticus ATCC 23263 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Pseudoramibacter;species:Pseudoramibacter alactolyticus; 13974.7025 7897.2788 5760.1161 22295073 nira Nitrogen Assimilatory N reduction NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 3415.7832 46139735 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 20446.6889 2626.3187 22016.9318 35143.1024 5287.714 209869140 dsra Sulfur sulfite reduction NA uncultured marine bacterium superkingdom:Bacteria; 4381.9638 251838824 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5678.3088 332377188 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 30145.8665 11300.2789 90020822 beta_agarase Carbon Cycling Carbon degradation Agar Saccharophagus degradans 2-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Saccharophagus;species:Saccharophagus degradans; 5706.6718 5335.4364 25990736 catb Organic Remediation Aromatics BTEX and related aromatics Streptomyces setonii superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 2514.262 10244.0208 354580474 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 2650.5857 392555340 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas undina NCIMB 2128 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas undina; 3221.6637 169777433 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 4660.7308 4054.9669 2138.5376 340787700 ppk Phosphorus Polyphosphate synthesis NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 5797.977 113476465 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 35212.6046 5639.0185 3862.951 6973.719 7688.3843 6423.4249 3871.6444 6067.1383 5702.6244 3157738 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 11864.6403 238060081 amyA Carbon Cycling Carbon degradation Starch Micromonospora sp. ATCC 39149 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora; 2841.6119 2379.9388 4429.2938 5423.485 73748868 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5370.8858 6306.4017 ieghzo270 hzo Nitrogen Anammox NA NA 2801.0166 5489.9336 5098.1074 3642.4095 113889951 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella sp. MR-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; 98374.9265 214043355 ben_bcla virulence NA NA Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 3756.6434 3050.2479 340939519 rgl Carbon Cycling Carbon degradation Pectin Chaetomium thermophilum var. thermophilum DSM 1495 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium thermophilum; 41621.9167 89094211 soxY Sulfur Sulfur Oxidation NA Oceanospirillum sp. MED92 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Neptuniibacter; 3174.6092 4279.3362 237624361 fccab Sulfur Sulfide Oxidation NA Thauera sp. MZ1T superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Thauera; 2649.4278 311340294 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma gypseum CBS 118893 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma gypseum; 2811.1823 6141.7234 44627.6278 6589.3123 22189.5699 4165.0312 6127.1042 8959.81 311330259 pec_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora teres f. teres 0-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora teres; 2417.8565 1603.2234 5199.7516 315262552 amyA Carbon Cycling Carbon degradation Starch Mycobacterium gilvum Spyr1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium gilvum; 2631.176 10053.7939 4093.5089 6167.7814 126661430 terc Metal Homeostasis Tellurium Detoxification Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4531.4619 33741.1498 4281.5061 4359.1653 10615.6861 4651.2148 5343.9523 4258.184 10893.0016 7637.9345 8012.3485 5298.7034 6718.7927 359424438 narg Nitrogen Denitrification NA Gordonia amarae NBRC 15530 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia amarae; 2765.2347 6949.2255 3962.3144 89895487 dmsa Organic Remediation Others NA Desulfitobacterium hafniense Y51 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 2610.9636 6804.3888 2622.9976 62512329 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 9300.5327 5024.0243 2618.1625 222354276 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 2961.6869 242215305 cellobiase Carbon Cycling Carbon degradation Cellulose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 3919.896 99083389 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 20581.9193 253577255 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 4365.0892 6179.4731 6063.981 14560.8006 40936.4194 4537.3422 13249561 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5049.8499 36805.6142 300245961 bbsg Organic Remediation Aromatics BTEX and related aromatics Clostridia bacterium enrichment culture clone BF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia; 12484.6873 374704139 atzb Organic Remediation Herbicides related compound NA Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 9440.9998 51109.3261 154151719 chitinase Carbon Cycling Carbon degradation Chitin Methanoregula boonei 6A8 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanoregula;species:Methanoregula boonei; 8019.0135 89097816 ppx Phosphorus Polyphosphate degradation NA Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5703.237 56566220 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11152.4011 6796.1977 16767.1818 10056.8281 69150.1563 2387.8297 149278043 ppx Phosphorus Polyphosphate degradation NA Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 8996.0192 4206.2801 238762366 nitrilase Organic Remediation Aromatics Other aromatics Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 6080.0628 5114.9695 5455.3988 5473.6426 3052.3451 110632414 nagg Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 6555.9503 4216.4742 5243.8987 12530.2392 3464.4679 99030480 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4589.1438 4510.006 7474.3769 5307.6789 156112218 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 6628.0042 338766703 dehh109 Organic Remediation Chlorinated solvents NA Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 6003.0257 3285.8969 3493.9417 103484191 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 5871.9056 371940154 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5940.192 12336.4919 6057.0702 2248.5901 3430.3616 9221.1013 134299162 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfotomaculum reducens MI-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum reducens; 26525.584 77360294 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 13349.2861 2912 inulinase Carbon Cycling Carbon degradation Inulin Kluyveromyces marxianus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces; 6689.2414 1771487 napa Nitrogen Dissimilatory N reduction NA Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 21140.8295 211905641 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6935.1566 73412.7846 133919281 B_lactamase_A Virulence Antibiotic resistance Degradation Leminorella grimontii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Leminorella; 6087.6134 4283.8844 3621.8065 2678.6363 324974915 xylanase Carbon Cycling Carbon degradation Hemicellulose Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 5220.8671 5305.0354 3313.8288 329567324 mer Metal Homeostasis Mercury Detoxification Metallosphaera cuprina Ar-4 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera cuprina; 8928.8799 161161022 linb Organic Remediation Pesticides related compound NA Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 103933.0231 9419.2645 3953.0766 373856458 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6611.3398 3786.7559 1937.2877 2243.2902 352682938 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax Kra 1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus tenax; 7575.5957 4868.0647 3797.5533 4758.2225 5302.2657 5467.5795 3219.8212 3165.299 2216.735 254447423 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HTCC5015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 10123.8667 6702.2455 189192456 rgl Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6327.2116 3237.1978 3861.9985 41191.7132 256586644 cutinase Carbon Cycling Carbon degradation Cutin Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 7072.2117 7181.7438 384080537 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 689749.819 48900.9816 89343770 ben_bcla virulence NA NA Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 5622.195 119355951 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 14333.5999 2946.3872 4715.3983 323317782 terc Metal Homeostasis Tellurium Detoxification Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 7019.8178 374743174 aln Organic Remediation Others NA Thermococcus litoralis DSM 5473 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus litoralis; 5650.4525 6428.5711 289547974 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 7184.5987 11246.102 4833.1708 5303.2241 11481.2875 4807.2989 3005.6196 3903.5198 328919375 pcag Organic Remediation Aromatics Other aromatics Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 6800.157 377559833 pcag Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 11904.5129 21839.3778 10135.5888 5364.0549 32721.7622 5349.2333 342808235 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio ichthyoenteri ATCC 700023 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio ichthyoenteri; 5792.8629 19962.4603 5721.0131 86772994 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium pseudolongum superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium; 11222.9888 401801769 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. enrichment culture clone rdhA01 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 9088.6469 398219359 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Phyllobacterium sp. YR531 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Phyllobacterium; 6789.3895 3241.2132 4160.1957 5519.6772 7944.4518 1758.5407 5672.9429 320546684 amyA Carbon Cycling Carbon degradation Starch Streptococcus equinus ATCC 9812 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equinus; 6099.729 7084.7722 2534.4947 2708800 urec Nitrogen Ammonification NA Synechococcus sp. PCC 7002 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8566.6258 85837516 pula Carbon Cycling Carbon degradation Starch Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6805.7123 4405.2192 4711.0073 4678.2877 6474.8021 3157.9109 194719525 exoglucanase Carbon Cycling Carbon degradation Cellulose Hypocrea virens superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 8993.6817 4488.5567 116071883 amyA Carbon Cycling Carbon degradation Starch Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5765.0384 15733.2341 12667616 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr853-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 9508.0042 91690021 pcag Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 14179.6014 30989.2414 3129.1413 5005.67 1913.281 119391491 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7151.0691 3918.3796 6988.717 2420.2539 3958.6178 1708.9559 2391.73 5583.6367 171682918 p450aro Organic Remediation Aromatics polycyclic aromatics Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 6518.5972 13855.4212 298369299 tehb Metal Homeostasis Tellurium Detoxification Neisseria sp. oral taxon 014 str. F0314 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sp. oral taxon 014; 6830.3793 3413.5229 4026.0354 5358.7541 15386.6848 7268.1658 5353.877 4614.0589 116804554 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 6700.5805 6095.5354 4880.7604 150397987 xyla Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium medicae WSM419 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium medicae; 15003.3025 302036508 mer Metal Homeostasis Mercury Detoxification Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 6011.9541 2380.1368 194311474 alginase Carbon Cycling Carbon degradation Alginate Prosthecochloris aestuarii DSM 271 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Prosthecochloris;species:Prosthecochloris aestuarii; 7216.8145 5240.8842 61660053 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7796.8013 262031975 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio cholerae CT 5369-93 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 4953.9484 133754585 phenol_oxidase Carbon Cycling Carbon degradation Lignin Omphalina pyxidata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Omphalina; 7166.568 22142.8502 291615301 PRK Carbon Cycling Carbon fixation Calvin cycle Sideroxydans lithotrophicus ES-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Gallionellales;family:Gallionellaceae;genus:Sideroxydans;species:Sideroxydans lithotrophicus; 5484.0886 3300.7126 2954.86 2259.4537 2689.986 256376686 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Actinosynnema mirum DSM 43827 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Actinosynnema;species:Actinosynnema mirum; 7814.4496 8660.4445 1968.8772 3208.3386 1294828 nifh Nitrogen Nitrogen fixation NA Fischerella sp. UTEX 1931 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 5775.5971 3894.0702 4665.6919 2612.1355 2891.5985 32397416 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Rhodopirellula baltica SH 1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Rhodopirellula;species:Rhodopirellula baltica; 6629.5549 12637.3322 1768.4983 15863.5 348595105 chitinase Carbon Cycling Carbon degradation Chitin Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 11030.1297 89512910 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6703.3717 4070.747 315644667 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 5902.3048 5165.6392 3867.1101 1885.9944 3157590 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 33328.3836 10417.1645 298576649 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 9265.1846 238917176 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Eubacterium eligens ATCC 27750 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium eligens; 5114.0886 1903.8608 340809982 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. 4557 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 7325.1808 9072.4113 21226763 arsm Metal Homeostasis Arsenic Detoxification Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 6545.9981 6430.2582 3787.5469 3417.8727 5047.1261 283468422 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24524.1709 196195270 mer Metal Homeostasis Mercury Detoxification Alcanivorax sp. DG881 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax; 13236.2286 359251466 xylj Organic Remediation Aromatics BTEX and related aromatics Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 6340.5173 257484537 xyla Carbon Cycling Carbon degradation Hemicellulose Pseudomonas syringae pv. tabaci ATCC 11528 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 5607.0906 2309.1223 2016.7094 409758197 phn Organic Remediation Herbicides related compound NA Pseudomonas viridiflava UASWS0038 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas viridiflava; 5516.6681 3627.5164 2550.9437 5713.0428 4463.0077 110648072 gdh Nitrogen Ammonification NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 17308.9044 3056.698 2131.4176 4970.0032 156977126 terc Metal Homeostasis Tellurium Detoxification Vibrio harveyi ATCC BAA-1116 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 16426.1327 353190035 camdcab Carbon Cycling Carbon degradation Camphor Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 6128.6558 11108.6271 9333.5799 372273132 bphc Organic Remediation Aromatics Polycyclic aromatics Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 14390.6484 5719.52 10000.444 3289.3803 62003553 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6377.2943 372006577 amyA Carbon Cycling Carbon degradation Starch Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 6305.5481 160917801 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5688.4608 46307912 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9576.0312 4146.1985 5611.6463 171463524 TIM Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 9551.7784 41396510 linb Organic Remediation Pesticides related compound NA Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 5870.159 5117.4364 2251.9253 392716424 arsc Metal Homeostasis Arsenic Detoxification Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7038.9876 5644.1315 5979.2785 9457.5269 359312989 pcpe Organic Remediation Herbicides related compound NA Gordonia polyisoprenivorans NBRC 16320 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia polyisoprenivorans; 6830.3433 5344.1881 5691.6655 308231291 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 27900.2374 291314638 nitro Organic Remediation Others NA Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 176709.0581 5312.7603 18987.0465 315475396 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 6489.0182 4814.0527 301335079 mer Metal Homeostasis Mercury Detoxification Bacillus samanii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 8816.0343 332886154 chitinase Carbon Cycling Carbon degradation Chitin Dysgonomonas mossii DSM 22836 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas mossii; 5501.7308 4366.8813 2560.8913 2645.0763 302680434 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 5481.8078 151560924 terc Metal Homeostasis Tellurium Detoxification Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 6724.6535 3290.291 149202859 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5773.2051 4489.6942 6040.3318 4585.4636 6386.3186 3385.494 691747 dehh109 Organic Remediation Chlorinated solvents NA Pseudomonas sp. superkingdom:Bacteria;phylum:Proteobacteria; 7728.2418 63020531 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter venetianus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 15420.5777 3686.7209 29093.3905 157318432 dmsa Organic Remediation Others NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 6734.3305 3179.8609 4673.8972 2511.5345 2038.1132 2729.6738 115399806 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 62841.9185 10457.5728 4742.3694 325696677 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK160 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 7358.0882 8077.9141 2494.3616 300869445 ben_bcla virulence NA NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 5159.4068 4529.9157 2275.8028 4608.0225 9178.414 5392.7304 3377.1329 254416717 pgk Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 40517.427 219815973 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium fCS1 superkingdom:Bacteria; 6353.5806 264679340 ppk Phosphorus Polyphosphate synthesis NA Comamonas testosteroni CNB-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6904.4512 9224.6948 5518.0859 187924691 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia phytofirmans PsJN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phytofirmans; 5907.3701 1691.0061 239994310 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 6467.6614 162568523 aoxb Metal Homeostasis Arsenic Detoxification Pseudomonas sp. 46 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7401.3746 3900.711 8600.5584 5434.355 1973.565 212633787 nrfa Nitrogen Dissimilatory N reduction NA Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 5369.8246 2641.3477 109290320 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4919.8074 4847.7413 315604314 amyA Carbon Cycling Carbon degradation Starch Actinomyces sp. oral taxon 180 str. F0310 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 180; 7048.5261 3348.2355 18077870 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7546.8846 5977.3576 406313 inulinase Carbon Cycling Carbon degradation Inulin Paenibacillus polymyxa superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 35389.1185 152982716 SoxA Sulfur Sulfur Oxidation NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 6443.0631 18126.0851 170090199 pme_Cdeg Carbon Cycling Carbon degradation Pectin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 20761.3382 209486986 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7418.732 3993.3923 4115.0939 4936.3025 2583.0194 5052.5459 365815034 catechol Organic Remediation Aromatics Other aromatics Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 7057.1748 3668.3452 5788.0808 81592.4063 94470861 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6262.2621 4686.1126 5818.629 209693950 FBPase Carbon Cycling Carbon fixation Calvin cycle Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 6895.6879 4527.6585 3755.8271 90903271 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6876.7115 3936.0128 3650.8586 291245484 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 6025.4653 192809915 mannanase Carbon Cycling Carbon degradation Hemicellulose Geobacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 6277.4497 335364297 mannanase Carbon Cycling Carbon degradation Hemicellulose Thermotoga thermarum DSM 5069 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermotoga;species:Thermotoga thermarum; 6731.2958 4694.8447 5312.2861 2341.7794 6988.1365 160914154 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Eubacterium dolichum DSM 3991 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;species:[Eubacterium] dolichum; 6172.0449 4269.5438 6827.0898 5782.9122 8174.9935 2887.2811 3041.695 5664.0561 239527572 amyA Carbon Cycling Carbon degradation Starch Lactobacillus paracasei subsp. paracasei 8700:2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 6207.7177 4685.871 5716.4713 2001.2206 5347.8472 373892033 ara Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 10203.7367 238726198 nfsb_2 Organic Remediation Aromatics Nitoaromatics Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 6035.1758 2978.0836 238592310 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 6391.9682 5168.0199 2302.9845 310871458 terc Metal Homeostasis Tellurium Detoxification Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 15941.1314 29293392 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 20618.3799 344198419 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 5944.9384 56566426 gdh Nitrogen Ammonification NA Prototheca wickerhamii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Trebouxiophyceae;order:Chlorellales;family:Chlorellaceae;genus:Prototheca; 12813.7374 5141.9581 4243.256 3999.5736 2116.9197 3027.6055 342316570 aoxb Metal Homeostasis Arsenic Detoxification Agromyces sp. 44AGV superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Agromyces; 6931.137 60593157 dsra Sulfur sulfite reduction NA uncultured prokaryote 7792.9005 3326.2659 91778989 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 6888.9263 88792061 CsoS2 Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 5965.7426 4657.5598 2479.5367 51692.2017 8366.2052 11805.9897 116609820 ppx Phosphorus Polyphosphate degradation NA Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 5999.6422 3587.297 5205.2582 5179.0944 223886621 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 9538.3018 8411.4158 312443443 xylanase Carbon Cycling Carbon degradation Hemicellulose Paludibacter propionicigenes WB4 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Paludibacter;species:Paludibacter propionicigenes; 5429.0557 365791948 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 7089.7294 3984.338 222154060 mnp Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 9451.96535 114308655 pchcf Organic Remediation Aromatics BTEX and related aromatics Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 12623.6306 96261.4001 326384575 bphc Organic Remediation Aromatics Polycyclic aromatics Gordonia neofelifaecis NRRL B-59395 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia neofelifaecis; 5934.563 183983405 nira Nitrogen Assimilatory N reduction NA Mycobacterium marinum M superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium marinum; 6027.5897 5630.6424 3221.0596 9701.3435 5764.2596 269826634 amyA Carbon Cycling Carbon degradation Starch Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 5912.3761 27475.7434 310793011 amyA Carbon Cycling Carbon degradation Starch Glomerella graminicola M1.001 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Glomerella;species:Glomerella graminicola; 9431.8505 269306291 xyla Carbon Cycling Carbon degradation Hemicellulose Xylanimonas cellulosilytica DSM 15894 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Promicromonosporaceae;genus:Xylanimonas;species:Xylanimonas cellulosilytica; 10415.5513 4099.5808 214031706 phn Organic Remediation Herbicides related compound NA Ruegeria sp. R11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6083.6095 385279942 arsc Metal Homeostasis Arsenic Detoxification gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 17002.6244 364569758 nfsb_2 Organic Remediation Aromatics Nitoaromatics Yokenella regensburgei ATCC 43003 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yokenella;species:Yokenella regensburgei; 9043.3089 4266.1273 10261.1653 208007844 FBPase Carbon Cycling Carbon fixation Calvin cycle Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 9294.5787 375053640 poba Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6364.7967 4337.6441 4116.5784 3109.3623 2255.6422 8076.6315 6134.3101 2894.6715 2224.7562 318037774 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6408.058 33862805 PRK Carbon Cycling Carbon fixation Calvin cycle Prochlorococcus marinus str. MIT 9313 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 6496.7604 2364.3152 385697272 nrfa Nitrogen Dissimilatory N reduction NA Haemophilus paraphrohaemolyticus HK411 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus paraphrohaemolyticus; 6735.8784 3622.3752 403205263 xylg Organic Remediation Aromatics Aromatic carboxylic acid Gordonia rhizosphera NBRC 16068 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rhizosphera; 6446.1707 357014207 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 10340.5913 407007684 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5424.6396 3294.447 4181.8935 5222.2263 3098.3446 315481147 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter upsaliensis JV21 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 13741.0433 257693884 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 6290.1833 4729.772 11411.3362 255712879 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Lachancea thermotolerans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Lachancea;species:Lachancea thermotolerans; 14109.4843 256424483 RgaE Carbon Cycling Carbon degradation Pectin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 19521.4995 86139497 pcag Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5737.87 3655.5152 2182.853 11791.8876 4399.76 2587.9308 401239401 vgb Virulence Antibiotic resistance Degradation Bacillus cereus VD107 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 5917.6757 46137167 dehh109 Organic Remediation Chlorinated solvents NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium graminearum; 6981.2542 4319.7205 6396.3169 3176.4404 2775.0461 6745.4615 4790.5779 5376.1045 2937.5948 5504.8167 390945418 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes finegoldii DSM 17242 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes finegoldii; 6274.8237 2456.4756 4514.8035 5279.674 214037062 pgk Carbon Cycling Carbon fixation Calvin cycle marine gamma proteobacterium HTCC2148 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8106.2498 313128042 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter cinaedi CCUG 18818 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cinaedi; 5871.5243 6243.6245 4765.5246 7328.8785 161330716 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 5888.9269 17540.7644 4005.6001 1986.7095 2260.8863 30018653 terc Metal Homeostasis Tellurium Detoxification Bacillus cereus ATCC 14579 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 6227.2937 2250.1772 4490.0155 7051.8183 3318.4272 3321.2676 2274.6394 5750.5628 303391473 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Encephalitozoon intestinalis ATCC 50506 superkingdom:Eukaryota;kingdom:Fungi;phylum:Microsporidia;family:Unikaryonidae;genus:Encephalitozoon;species:Encephalitozoon intestinalis; 5682.9952 4041.1809 6445.4051 10090.7356 2747.5712 4689.3515 46114704 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7624.511 2485.468 163849555 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylobacterium extorquens PA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium extorquens; 5476.8064 148474732 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7053.1132 86609435 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6211.8471 4954.012 3576.3795 379328599 amyA Carbon Cycling Carbon degradation Starch Glaciecola punicea DSM 14233 = ACAM 611 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola punicea; 8262.8775 119719457 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermofilum pendens Hrk 5 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermofilaceae;genus:Thermofilum;species:Thermofilum pendens; 5795.6734 3229.8105 4453.8759 255707390 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8648.0036 4314.4001 1987.8345 59957132 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 10334.8171 384108501 amyA Carbon Cycling Carbon degradation Starch Treponema sp. JC4 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema; 19800.3687 70996356 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 6515.806 387968677 bphc Organic Remediation Aromatics Polycyclic aromatics Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 8800.1113 4438.2992 5007.1738 3382.7494 3056.0533 291069680 ppx Phosphorus Polyphosphate degradation NA Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 6021.5642 3595.745 107015124 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8371.5422 115285885 arylest Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ambifaria; 9254.5571 4728.9534 1928.9171 422314281 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5834.5858 2495.9828 156862451 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 5981.9678 6568.9574 5963.6934 3967.1814 398207699 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 8762.0815 261211175 sqr Sulfur Sulfide Oxidation NA Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 5007.3617 3743.8291 6424.5882 2588.6697 260615472 arylest Organic Remediation Aromatics Other aromatics Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 6619.842 373944274 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium sp. BNL1100 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6179.967 3544.0958 5203.9404 3751.5748 336294320 ppx Phosphorus Polyphosphate degradation NA Zymomonas mobilis subsp. pomaceae ATCC 29192 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Zymomonas;species:Zymomonas mobilis; 5378.3651 186474131 bend Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phymatum; 271466.9607 5040.786 6523.8297 241957810 endochitinase Carbon Cycling Carbon degradation Chitin Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 15514.4242 238721582 nrfa Nitrogen Dissimilatory N reduction NA Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 6058.3106 8172.941 38350517 amyA Carbon Cycling Carbon degradation Starch Metallosphaera hakonensis superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera; 6150.8535 149127893 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 5903.9636 3609.1166 2091.6344 1756.3375 283781050 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 9127.9535 5400.9696 5237.1011 384086660 tktA Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus thiooxidans ATCC 19377 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus thiooxidans; 10439.929 5367.7943 117622264 beta_agarase Carbon Cycling Carbon degradation Agar Agarivorans sp. QM38 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Agarivorans; 6439.4653 270210920 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4825.847 3029.2159 5026.9542 91692605 mdla Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 4916.559 255707024 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6445.2875 4527.0316 2693.8763 110224736 mmox Carbon Cycling Methane Methane oxidation Methylocystis heyeri superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 15316.4962 5522.1167 194474803 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 5651.168 4696.9814 1699.5175 4131.0243 363984534 ppx Phosphorus Polyphosphate degradation NA Thermanaerovibrio velox DSM 12556 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio velox; 8956.8589 90440300 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 6609.2676 4329.4317 6458.6482 332370663 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Melissococcus plutonius ATCC 35311 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Melissococcus;species:Melissococcus plutonius; 5581.3492 302412212 glucoamylase Carbon Cycling Carbon degradation Starch Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 98106.9155 2815.7105 284448047 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 6581.0819 225872500 amyA Carbon Cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 5770.96 2536.9258 295093943 amyA Carbon Cycling Carbon degradation Starch Coprococcus sp. ART55/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Coprococcus; 8570.5537 5115.2681 2483.3551 308177708 terc Metal Homeostasis Tellurium Detoxification Arthrobacter arilaitensis Re117 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter arilaitensis; 6028.8238 3771.8353 4500.3312 2853.2401 6593.824 2619.729 8552.6942 5142.5927 3532.5332 4462.4878 32455996 tktA Carbon Cycling Carbon fixation Calvin cycle Ruegeria sp. PR1b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 6069.2203 9578.2252 38199371 narg Nitrogen Denitrification NA Corynebacterium diphtheriae superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium; 5628.6692 2309.1145 2712.7451 153832975 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio harveyi HY01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 4952.124 3306.4982 6380.8084 2242.218 7409.9267 2147.3415 5708.2742 342349563 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 107442.455 379720768 amyA Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 16150.9801 2391.6894 308067234 cda Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 7425.1246 3577.3342 3061.6796 6878.0965 56809543 protease_serine_fungi Carbon Cycling Carbon degradation protein Zoophthora radicans superkingdom:Eukaryota;kingdom:Fungi;order:Entomophthorales;family:Entomophthoraceae;genus:Zoophthora; 9412.4098 2832.7635 307594823 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 6464.7758 5178.1635 3416.6837 89146668 pmoa Carbon Cycling Methane Methane oxidation Methylobacter sp. clone FIN3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter; 21167.8712 3695.131 170940571 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 6387.4778 385677237 terc Metal Homeostasis Tellurium Detoxification Amycolatopsis sp. ATCC 39116 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis; 4776.0724 4266.0141 3564.9157 8023.1987 5393.9432 152979372 tehb Metal Homeostasis Tellurium Detoxification Actinobacillus succinogenes 130Z superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus succinogenes; 6544.6387 13224.2459 2110.0303 2537.7426 386580275 xyla Carbon Cycling Carbon degradation Hemicellulose Streptococcus suis JS14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 11126.097 109897728 endoglucanase Carbon Cycling Carbon degradation Cellulose Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 6904.744 4749.0406 1980.0412 381188699 arsc Metal Homeostasis Arsenic Detoxification Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 9106.5226 3177.739 2088.7746 1953.348 11643.2009 2984080 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 5455.6839 8162.2883 2982.3665 53518.6065 301798991 tktA Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HdN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 51417.4468 169616296 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 7691.0505 2793.505 298589785 nosz Nitrogen Denitrification NA Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 7341.8703 106613.2772 222475903 mer Metal Homeostasis Mercury Detoxification Halorubrum lacusprofundi ATCC 49239 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halorubrum;species:Halorubrum lacusprofundi; 15266.883 339048629 rubisco Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium IMCC2047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9257.055 314546.2505 2606.0359 310974446 amyA Carbon Cycling Carbon degradation Starch Meiothermus sp. SK3-2 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus; 7909.0197 4200.0037 2635.5564 2783.2335 8562.7406 169627688 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 12187.7463 1931.0166 8476.1636 194290915 atzb Organic Remediation Herbicides related compound NA Cupriavidus taiwanensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus; 8872.8079 225573101 amyA Carbon Cycling Carbon degradation Starch Blautia hydrogenotrophica DSM 10507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hydrogenotrophica; 6221.4184 3989.9062 5610.1017 5197.012 6327.4312 10393.1756 5002.8014 2159.7671 2718.9755 4260.2114 5055.7515 372266271 cda Carbon Cycling Carbon degradation Starch Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 6257.3032 3275.1728 4209.0631 1762.6694 4340.0312 46519975 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5837.7951 332285982 dehh109 Organic Remediation Chlorinated solvents NA Pusillimonas sp. T7-7 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Pusillimonas; 5860.336 4221.5059 4115.2943 5740.1501 50982446 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5836.4643 1945.5202 187975930 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 10223.875 206183.3179 87281205 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6062.1787 294484035 ppx Phosphorus Polyphosphate degradation NA Simonsiella muelleri ATCC 29453 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Simonsiella;species:Simonsiella muelleri; 5367.8317 355396516 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermovirga lienii DSM 17291 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermovirga;species:Thermovirga lienii; 7747.7453 398199085 cmci Organic Remediation Aromatics Other aromatics Pseudomonas sp. GM60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7671.744 10789.0539 5943.9776 345302720 nosz Nitrogen Denitrification NA Rhodothermus marinus SG0.5JP17-172 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 18376.5165 12516.3001 4865.5829 8438.443 4201.5788 5512.7956 4256.6902 11152.366 194546545 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas aeruginosa C3719 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 24589.937 156055520 phenol_oxidase Carbon Cycling Carbon degradation Lignin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 6035.9259 21326995 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. GU5L5 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 6206.9918 3482.7647 3758.6247 28542657 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 19291.6933 298721356 tehb Metal Homeostasis Tellurium Detoxification Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 8848.364 6007.3634 11837.585 10919.0535 5301.0597 5494.7224 410155936 narb Nitrogen Assimilatory N reduction NA Glaciecola pallidula DSM 14239 = ACAM 615 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola pallidula; 6558.9841 5337.9344 1780.1533 387968685 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri TS44 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 7119.2459 3706.9196 2529.0684 310780129 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Ilyobacter polytropus DSM 2926 superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Fusobacteriaceae;genus:Ilyobacter;species:Ilyobacter polytropus; 8827.5 227483291 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio vulnificus YJ016 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 7221.612 2478.547 30306.109 4336.3313 377554006 xyla Carbon Cycling Carbon degradation Hemicellulose Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 6231.5172 332313708 gdh Nitrogen Ammonification NA Streptococcus porcinus str. Jelinkova 176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus porcinus; 5558.3891 365905811 terc Metal Homeostasis Tellurium Detoxification Lactobacillus versmoldensis KCTC 3814 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus versmoldensis; 5286.3369 342817944 terc Metal Homeostasis Tellurium Detoxification Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 5894.4475 2920.9345 2751.1453 3133.2146 371445128 dsrB Sulfur sulfite reduction NA uncultured Desulfobulbus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 7012.4625 3222.8044 3611.3771 31413.5741 15875.9392 3122.9417 8555.0511 79036.4874 145591451 APS_AprB Sulfur adenylylsulfate reductase NA Pyrobaculum arsenaticum DSM 13514 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum arsenaticum; 9798.5151 6154.1461 302188020 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas syringae pv. syringae 642 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 5921.2391 3900.5934 3857.0028 22810.4993 20086.0383 121701423 nitrate_reductase Nitrogen N Assimilation NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 11132.2824 52347036 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus licheniformis DSM 13 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 6227.153 6431.69 226943622 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 7054.2944 296027345 cutinase Carbon Cycling Carbon degradation Cutin Tsukamurella paurometabola DSM 20162 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Tsukamurellaceae;genus:Tsukamurella;species:Tsukamurella paurometabola; 6289.2795 2353.5731 4301.4086 154240600 mcra Carbon Cycling Methane Methanogenesis uncultured euryarchaeote superkingdom:Archaea;phylum:Euryarchaeota; 41988.6783 3288.7327 1705.2772 6917.7214 367030315 rgl Carbon Cycling Carbon degradation Pectin Myceliophthora thermophila ATCC 42464 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Myceliophthora;species:Myceliophthora thermophila; 6388.2815 3773.3545 4386.2783 6762.5001 5090.0069 2733.9593 5332.4122 111073763 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 6187.4354 10617.2781 324993963 cda Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK405 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 6668.61915 385210322 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 46895.4785 119495997 exoglucanase Carbon Cycling Carbon degradation Cellulose Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 11317.0059 302573290 ara Carbon Cycling Carbon degradation Hemicellulose Micromonospora aurantiaca ATCC 27029 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora aurantiaca; 7324.4403 149046.6405 332741059 amyA Carbon Cycling Carbon degradation Starch Bacteroides coprosuis DSM 18011 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprosuis; 6704.3325 310945586 amyA Carbon Cycling Carbon degradation Starch Gardnerella vaginalis ATCC 14019 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Gardnerella;species:Gardnerella vaginalis; 5339.8189 1936.3745 46116138 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 7080.6398 251799506 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 13892.6267 2593.08 2261.0126 32895240 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9236.1276 73534241 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6520.3116 7362.3812 387936843 fosa Virulence Antibiotic resistance Degradation Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 8424.9418 14895.7066 33568.5118 82943636 oxdb Organic Remediation Aromatics Nitoaromatics Gibberella zeae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella; 4782.3104 3300.8582 2728.7252 118424467 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 15044.6528 399021538 linb Organic Remediation Pesticides related compound NA Herbaspirillum sp. CF444 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 5479.3711 4983.134 5690011 xyla Carbon Cycling Carbon degradation Hemicellulose Ruminococcus flavefaciens superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 3303.883 2397.7113 15392.3424 1702.9799 198269699 amyA Carbon Cycling Carbon degradation Starch Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 3524.8593 324966862 amyA Carbon Cycling Carbon degradation Starch Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 3344.84 78485160 TIM Carbon Cycling Carbon fixation Calvin cycle Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 3474.1664 3578.6416 4879.17 269959804 napa Nitrogen Dissimilatory N reduction NA Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 3595.3526 6519.1202 5227.173 306775505 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tuberculosis SUMu001 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 3288.8131 2479.3947 3123.3877 283481897 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 4020.3191 158138911 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5339.0254 2903.823 10909.679 219550169 nrfa Nitrogen Dissimilatory N reduction NA Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 3040.1632 120435084 gdh Nitrogen Ammonification NA Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 5921.9323 375008962 xyla Carbon Cycling Carbon degradation Hemicellulose Geobacillus thermoleovorans CCB_US3_UF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 4379.3372 2855.4616 3839.6641 119486793 nifh Nitrogen Nitrogen fixation NA Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 3793.4974 2255.1607 9594.3384 4020.8975 2897.7737 186972006 terc Metal Homeostasis Tellurium Detoxification Elusimicrobium minutum Pei191 superkingdom:Bacteria;phylum:Elusimicrobia;class:Elusimicrobia;order:Elusimicrobiales;family:Elusimicrobiaceae;genus:Elusimicrobium;species:Elusimicrobium minutum; 4321.422 6802.7646 169666337 protease_serine_fungi Carbon Cycling Carbon degradation protein Olpitrichum tenellum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Olpitrichum; 2917.8779 163639458 GAPDH_Euglenozoa Other Phylogenetic NA Trypanosoma sp. Msubugwe-2006 superkingdom:Eukaryota;order:Kinetoplastida;family:Trypanosomatidae;genus:Trypanosoma; 4013.9035 4028.5381 4815.0355 1897.9888 2939.8043 4372.5627 387846286 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 3216.7272 4484.8461 297572057 ppx Phosphorus Polyphosphate degradation NA Arcanobacterium haemolyticum DSM 20595 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Arcanobacterium;species:Arcanobacterium haemolyticum; 4910.8807 9380.6865 237686991 atza Organic Remediation Herbicides related compound NA Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 7269.4498 99030497 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 7942.2451 35349.7109 3708.1217 10035.23 32895070 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4665.399 4208.6119 67919424 ppx Phosphorus Polyphosphate degradation NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 5109.7945 7358.6342 2677.4456 34557750 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 102821.2099 148371199 phn Organic Remediation Herbicides related compound NA Brucella ovis ATCC 25840 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Brucella;species:Brucella ovis; 3475.2537 1759.4869 259484291 phytase Phosphorus Phytic acid hydrolysis NA Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4108.3843 157804821 APS_AprB Sulfur adenylylsulfate reductase NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 10394.9492 8566.5442 315282901 chitinase Carbon Cycling Carbon degradation Chitin Listeria marthii FSL S4-120 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria marthii; 3354.9207 2862.7204 305667538 sqr Sulfur Sulfide Oxidation NA Maribacter sp. HTCC2170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Maribacter; 3637.926 7318.1047 3990.9939 7935.9144 2487.2732 156719686 mer Metal Homeostasis Mercury Detoxification Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 3594.3872 3585.4854 305860138 arsc Metal Homeostasis Arsenic Detoxification Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4974.8356 4196.381 52002049 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 4660.0769 126642992 vana Carbon Cycling Carbon degradation Vanillin/Lignin Acinetobacter baumannii ATCC 17978 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 4355.4646 11198.3442 315178642 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 17909.3833 4686.0661 4342.2323 5256.1202 160917412 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3168.321 208009913 PRI Carbon Cycling Carbon fixation Calvin cycle Aliivibrio salmonicida LFI1238 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio salmonicida; 4266.602 6784.8935 3858.3545 357417659 glucoamylase Carbon Cycling Carbon degradation Starch Pseudoxanthomonas spadix BD-a59 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Pseudoxanthomonas;species:Pseudoxanthomonas spadix; 4095.7384 5974.7454 8962.6246 4598.0173 5979.1951 3481.2443 380316428 ppx Phosphorus Polyphosphate degradation NA Listeriaceae bacterium TTU M1-001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae; 3154.5265 190685904 phytase Phosphorus Phytic acid hydrolysis NA Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 7015.8364 312623221 amyA Carbon Cycling Carbon degradation Starch Caldicellulosiruptor kronotskyensis 2002 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor kronotskyensis; 3777.72 3518.4771 6136.8577 2417.1604 6037.7629 40253059 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4447.0456 5005.3067 90954639 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 26692.6521 4074.6042 405603193 badh Organic Remediation Aromatics Other aromatics Klebsiella pneumoniae subsp. pneumoniae WGLW2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 5117.5566 336009634 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 5_1_57FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4187.6294 3535.9455 2959.5665 3202.9151 66969608 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 3332.331 338233822 cysI Sulfur Other NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 4224.2831 25028.851 345873382 TIM Carbon Cycling Carbon fixation Calvin cycle Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 19768.3683 261371562 tehb Metal Homeostasis Tellurium Detoxification Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 4466.1135 4032.7801 7171.8071 3652.0088 189438070 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 8097.1063 5949.0727 7935.1024 2471.0451 5787.785 339515138 amyA Carbon Cycling Carbon degradation Starch Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 3505.5741 2030.7007 109700938 beta_agarase Carbon Cycling Carbon degradation Agar Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 25330.0436 3845.0366 77378667 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4169.802 315280479 B_lactamase_A Virulence Antibiotic resistance Degradation Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 7458.8084 67901108 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5616.8555 8112.9709 224956807 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 3419.963 148283178 endochitinase Carbon Cycling Carbon degradation Chitin Lecanicillium psalliotae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Lecanicillium; 12186.2309 6857.7273 8062.4767 26739.7026 83758764 amyA Carbon Cycling Carbon degradation Starch Paenibacillus campinasensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3322.57 108802078 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. MCS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 3814.8965 3819.0793 148838502 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 4172.235 3087.3497 8709.6793 3792.1378 116804638 nasa Nitrogen Assimilatory N reduction NA uncultured prokaryote 11130.6014 2460.9909 5328.4675 342820326 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 4248.204 3839.8433 3590.7843 289523535 ppx Phosphorus Polyphosphate degradation NA Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 4548.2403 5467.5232 91797828 arylest Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 4897.0999 9415.094 119673422 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum islandicum DSM 4184 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 19040.0459 47684.5097 338837993 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida S16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 3248.9364 342826332 phn Organic Remediation Herbicides related compound NA Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 3881.8779 150961434 endochitinase Carbon Cycling Carbon degradation Chitin Pseudomonas aeruginosa PA7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas aeruginosa; 4359.85065 57335429 endochitinase Carbon Cycling Carbon degradation Chitin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3585.3621 346310428 amyA Carbon Cycling Carbon degradation Starch Collinsella tanakaei YIT 12063 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella tanakaei; 4585.7151 2795.568 176203.9494 336125331 cysI Sulfur Other NA Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 5386.2463 6178.7516 309395684 cellobiase Carbon Cycling Carbon degradation Cellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5984.2501 8061.6133 3166.6983 5596.1247 330401981 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 4737.2735 4819.6847 7112.6268 315498400 RgaE Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 3907.5723 3281.3838 2921.1493 33452.431 269961489 cysI Sulfur Other NA Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 4852.6239 271968653 linb Organic Remediation Pesticides related compound NA Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 13755.8866 3645.9127 4828.3974 7085.3946 145322162 nagg Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 3577.8154 384575779 dsrB Sulfur sulfite reduction NA Desulfonatronovibrio magnus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronovibrio; 5472.2589 46913341 endoglucanase Carbon Cycling Carbon degradation Cellulose Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 3618.4373 2158.3382 4183.2686 40253032 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4363.8136 6160.9479 2393.4721 46411150 phytase Phosphorus Phytic acid hydrolysis NA Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 3637.0259 5381.4094 149179130 amyA Carbon Cycling Carbon degradation Starch Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 9476.7174 145690524 amyA Carbon Cycling Carbon degradation Starch Streptococcus suis 05ZYH33 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 4123.3999 5310.3022 13159.503 1769.3761 15623165 suc_CoA_red Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Sulfolobus tokodaii str. 7 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus tokodaii; 3840.5544 304430873 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptococcus pyogenes ATCC 10782 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 3002.4739 358035396 xylanase Carbon Cycling Carbon degradation Hemicellulose Pseudoalteromonas sp. BSi20429 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 9334.1247 26024.5159 9104.5427 157320845 cellobiase Carbon Cycling Carbon degradation Cellulose Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 4102.345 212537099 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 4885.2814 374324217 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 7754.1651 118424430 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4653.4949 9999.1338 5469.8111 4932.1672 2105.4669 3125.9957 300023046 FBPase Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium denitrificans ATCC 51888 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 9885.957 2906.9749 297180004 chnd Organic Remediation Other Hydrocarbons NA uncultured bacterium HF0010_16H03 superkingdom:Bacteria; 31756.9643 158309750 ben_bcla virulence NA NA Acaryochloris marina MBIC11017 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris;species:Acaryochloris marina; 8413.6182 288921731 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4031.7794 379009064 sqr Sulfur Sulfide Oxidation NA Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 6434.5073 3512.2377 9438.6115 302199765 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermosediminibacter oceani DSM 16646 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermosediminibacter;species:Thermosediminibacter oceani; 3198.1511 3012.6725 34017158 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4040.9511 350533153 amyA Carbon Cycling Carbon degradation Starch Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 3990.6684 2027.4607 149771592 ppk Phosphorus Polyphosphate synthesis NA Flavobacterium psychrophilum JIP02/86 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium psychrophilum; 4221.5508 3413.4067 5131.2754 227235681 cda Carbon Cycling Carbon degradation Starch Anaerococcus lactolyticus ATCC 51172 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus lactolyticus; 462072.7226 782225.5874 388425067 badh Organic Remediation Aromatics Other aromatics Bacillus sp. M 2-6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 21250.454 154493428 arsc Metal Homeostasis Arsenic Detoxification Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 23222.8312 294496583 mer Metal Homeostasis Mercury Detoxification Methanohalophilus mahii DSM 5219 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus;species:Methanohalophilus mahii; 32188.5487 338999309 mer Metal Homeostasis Mercury Detoxification Halomonas sp. TD01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3666.9692 162607.2785 238725131 cueo Metal Homeostasis Copper Detoxification Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 4012.78 5553.1544 2252.1753 3979.094 16081.3661 294473281 pme Carbon Cycling Carbon degradation Pectin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 6929.6108 5691.2844 12315.0209 3614.4289 170142654 aln Organic Remediation Others NA Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 11785.5132 6074.4059 293328284 linb Organic Remediation Pesticides related compound NA Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 5744.7625 14276809 dsrB Sulfur sulfite reduction NA Desulfotomaculum putei superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 4360.4717 5570.4439 35535.2931 3924.3349 3284.8351 373485724 thl Organic Remediation Aromatics Aromatic carboxylic acid Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 3724.8656 213536773 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 4129.4966 3437.7814 218780182 dsra Sulfur sulfite reduction NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 4932.1128 5955.3454 12405.1651 5627.8225 160881491 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4338.7816 21565.367 4480.61 2272.9145 14630.3082 4916.8894 206572686 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3791.0468 3915.977 289543661 linb Organic Remediation Pesticides related compound NA Mycobacterium tuberculosis T17 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 4786.4743 3574.0042 6141.9435 2142.754 4312.4837 160892978 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. L2-50 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4835.7668 164456054 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 19973.2842 99083033 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3716.5275 46517937 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3171.9732 2003.2862 1870681 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 3103.7825 46917316 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6870.8746 385183694 pcpe Organic Remediation Herbicides related compound NA Burkholderia sp. Ch1-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 4143.923 5699.018 3751.0594 5210.8092 1921.353 376380529 cysJ Sulfur Reduction NA Klebsiella oxytoca 10-5243 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 5189.6256 4835.819 5343.6285 161017096 ppx Phosphorus Polyphosphate degradation NA Bartonella tribocorum CIP 105476 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella tribocorum; 10461.9971 55975635 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4300.9758 4329.1566 188485515 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 4112.7142 5503.9676 46126347 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 3524.2299 4678.4045 33243185 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4819.92 6388.1794 2577.7563 3319.296 119671539 tktA Carbon Cycling Carbon fixation Calvin cycle Azoarcus sp. BH72 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Azoarcus; 3939.3864 5366.4423 2521.3835 16764.3227 17241.2032 3991.0284 196212226 cysI Sulfur Other NA Geobacillus sp. G11MC16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 5038.1606 308059572 cysJ Sulfur Reduction NA Pantoea vagans C9-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea vagans; 3371.2237 2453.2844 10905.4289 4066.7744 110291942 amyA Carbon Cycling Carbon degradation Starch Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3626.1238 5923.3157 1959.2649 3216.8022 83950247 ben_bcla virulence NA NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 3883.5886 302388333 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 6431.9083 4649.4709 5407.7346 4282.2537 1701.1011 3913.4617 238852856 amyA Carbon Cycling Carbon degradation Starch Lactobacillus gasseri 202-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 148022.0057 342872897 pcpe Organic Remediation Herbicides related compound NA Fusarium oxysporum Fo5176 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium oxysporum; 6813.2514 149375513 xylg Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 9570.6024 295412267 catechol_b Organic Remediation Aromatics Other aromatics Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 3964.6831 4468.5615 5085.4097 3793.7343 5408.701 302691254 glx Carbon Cycling Carbon degradation Lignin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3280.3401 366085211 nfsa_2 Organic Remediation Aromatics Nitoaromatics Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 3712.4077 3301.7599 4478.3689 6262.6777 86358679 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 4735.8205 393185319 limeh Carbon Cycling Carbon degradation Terpenes Rhizobium leguminosarum bv. trifolii WSM2297 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4820.3344 52081512 rgh Carbon Cycling Carbon degradation Pectin Bacillus licheniformis ATCC 14580 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus licheniformis; 5343.1178 222529845 mannanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor bescii DSM 6725 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor bescii; 3596.6547 1707.2417 332173515 beta_agarase Carbon Cycling Carbon degradation Agar Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 4009.9578 344221951 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4673.6916 326203119 chitinase Carbon Cycling Carbon degradation Chitin Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 3434.3799 2952.6901 4999.6281 115386594 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 9124.3804 324310830 amyA Carbon Cycling Carbon degradation Starch Odoribacter splanchnicus DSM 20712 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter splanchnicus; 4123.3788 4353.7487 92115334 mer Metal Homeostasis Mercury Detoxification Chromohalobacter salexigens DSM 3043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Chromohalobacter;species:Chromohalobacter salexigens; 6902.7916 5743.1967 8676.6081 5712.3884 5456.7541 1910.317 357265636 tktA Carbon Cycling Carbon fixation Calvin cycle Crocosphaera watsonii WH 0003 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 3100.7218 6598.8986 294792214 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Veillonella sp. 6_1_27 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella; 5188.3958 387937377 amyA Carbon Cycling Carbon degradation Starch Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 4496.2413 10565.2292 154287478 glucoamylase Carbon Cycling Carbon degradation Starch Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 7450.304 9834.118 408392668 chnd Organic Remediation Other Hydrocarbons NA Fusarium pseudograminearum CS3096 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium pseudograminearum; 4873.0483 356414324 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Gluconobacter morbifer G707 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconobacter;species:Gluconobacter morbifer; 5051.2998 3207.0461 8365.8882 325292112 one_ring_12diox Organic Remediation Aromatics Other aromatics Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 4692.2019 5121.7361 56785438 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. AH28-2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 3833.2468 6437.8618 2728.379 199590694 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus rhamnosus HN001 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus rhamnosus; 5104.8508 86140326 amyA Carbon Cycling Carbon degradation Starch Leeuwenhoekiella blandensis MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 6605.798 36021.4986 12230.1072 298575637 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 8169.2674 505533.3316 4468787 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3837.7433 91692940 nagg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 3507.192 2507.8142 2862.3601 154505198 RgaE Carbon Cycling Carbon degradation Pectin Ruminococcus gnavus ATCC 29149 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] gnavus; 4000.0773 3223.0103 80976981 pula Carbon Cycling Carbon degradation Starch Streptococcus suis 89/1591 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 6634.7132 84494737 amyA Carbon Cycling Carbon degradation Starch Janibacter sp. HTCC2649 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Janibacter; 5195.6584 6166.6478 3477.6141 114797464 soxY Sulfur Sulfur Oxidation NA Hyphomonas neptunium ATCC 15444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hyphomonas;species:Hyphomonas neptunium; 3467.0902 226363860 bphF1 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 5043.4844 5069.1877 2342.7343 9635.2051 15894015 tehb Metal Homeostasis Tellurium Detoxification Clostridium acetobutylicum ATCC 824 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium acetobutylicum; 4727.1816 46881385 endochitinase Carbon Cycling Carbon degradation Chitin Listeria monocytogenes str. 4b F2365 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 6477.1716 870798 GAPDH_Euglenozoa Other Phylogenetic NA Euglena gracilis superkingdom:Eukaryota;phylum:Euglenida;order:Euglenales;family:Euglenaceae;genus:Euglena; 3459.5907 2144.9826 365420743 sqr Sulfur Sulfide Oxidation NA Bradyrhizobium sp. STM 3843 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6100.0751 4713.6766 299143356 nitrilase Organic Remediation Aromatics Other aromatics Peptoniphilus sp. oral taxon 386 str. F0131 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Peptoniphilus;species:Peptoniphilus sp. oral taxon 386; 4503.751 4476.3366 1859.8084 3128.7773 340348747 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 3393.9684 291287585 fccab Sulfur Sulfide Oxidation NA Denitrovibrio acetiphilus DSM 12809 superkingdom:Bacteria;phylum:Deferribacteres;class:Deferribacteres;order:Deferribacterales;family:Deferribacteraceae;genus:Denitrovibrio;species:Denitrovibrio acetiphilus; 4027.0039 2884.0254 160917430 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11154.3406 319423160 glucoamylase Carbon Cycling Carbon degradation Starch Cellulophaga algicola DSM 14237 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga algicola; 6182.232 4611.2471 6257.7258 6577.7858 2441.4024 3941.0006 7160.9671 333367487 gdh Nitrogen Ammonification NA Psychrobacter sp. 1501(2011) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 4064.2883 2701.8055 339503007 TIM Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 3948.371 6020.4844 3565.2527 5967.3895 4163.4598 6546.6236 11765.2254 2686.6537 2264.0555 8628.0284 334143103 fccab Sulfur Sulfide Oxidation NA Thioalkalimicrobium cyclicum ALM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 269412.5707 6868.526 159882287 mer Metal Homeostasis Mercury Detoxification Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 3130.0927 6460.3418 6703.198 123977749 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Hyperthermus butylicus DSM 5456 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Hyperthermus;species:Hyperthermus butylicus; 3918.5369 221532496 rd Organic Remediation Chlorinated solvents NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 3705.1348 134082832 mannanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6815.4779 2522.2662 1822.4096 5134.2468 339017964 arsc Metal Homeostasis Arsenic Detoxification Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 11482.0392 302329284 amyA Carbon Cycling Carbon degradation Starch Acidilobus saccharovorans 345-15 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Acidilobales;family:Acidilobaceae;genus:Acidilobus;species:Acidilobus saccharovorans; 5190.1489 345880951 terc Metal Homeostasis Tellurium Detoxification Prevotella oulorum F0390 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oulorum; 4388.9557 6373.3049 3079.7313 12667648 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr610-9 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 5314.8096 1837.4722 247544646 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4241.928 2690.7587 28623.7821 223029705 hsp90_Stramenopiles Other Phylogenetic NA Thraustochytrium aureum superkingdom:Eukaryota;order:Labyrinthulomycetes;family:Thraustochytriaceae;genus:Thraustochytrium; 5373.2645 6690.3711 2357.3978 304406864 amyA Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 3229.8866 4287.0185 5969.3643 2140.0142 2131.7239 328946983 xylanase Carbon Cycling Carbon degradation Hemicellulose Treponema succinifaciens DSM 2489 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema succinifaciens; 4092.4417 6090320 rgl Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 23304.5421 15161.8982 3921.0169 336300747 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 22404.3132 354825656 dsra Sulfur sulfite reduction NA Methanolinea tarda NOBI-1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanoregulaceae;genus:Methanolinea;species:Methanolinea tarda; 4459.377 160917472 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5455.6262 392287221 amyA Carbon Cycling Carbon degradation Starch Frankia sp. QA3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4399.4596 4367.0404 4359.7338 7666.6033 3057.6988 118166518 cdh Carbon Cycling Carbon degradation Terpenes Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 3374.0605 4038.965 6611.7729 26017.2874 2910.7288 336300754 RgaE Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 8336.6775 21890.9798 2343.3838 384067904 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 18761.7544 8520.1608 9073.9067 5723.5389 2347.7949 260777649 terc Metal Homeostasis Tellurium Detoxification Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 80421.833 224056.1601 297376021 norb Nitrogen Denitrification NA Waddlia chondrophila WSU 86-1044 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Waddliaceae;genus:Waddlia;species:Waddlia chondrophila; 3321.5184 192965.1292 1791.3318 28722.4913 255930229 lactase_fungi Carbon Cycling Carbon degradation Lactose Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 4012.1003 6672.0734 1893.3998 3775.2861 62512281 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3143.2204 1847.6022 323402466 atza Organic Remediation Herbicides related compound NA Clostridium symbiosum WAL-14163 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 4113.0836 353542872 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Desulfitobacterium metallireducens DSM 15288 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium metallireducens; 4569.8185 295696587 arsc Metal Homeostasis Arsenic Detoxification Kyrpidia tusciae DSM 2912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Kyrpidia;species:Kyrpidia tusciae; 4007.0811 5073.114 11634.8208 34017056 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 3966.029 9130.2113 156523553 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 4621.2923 88046.677 9827.2184 3583.7953 2166.6779 4589.9726 1834.1009 3024.392 15168.7285 312134191 xylanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor owensensis OL superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor owensensis; 6316.9718 184555.3688 6511.6571 12476.0823 10305.9919 9612.9168 4928.1954 8443.3389 3080.6058 3115.3565 7474.843 325105682 mannanase Carbon Cycling Carbon degradation Hemicellulose Pedobacter saltans DSM 12145 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter saltans; 3753.9806 160917702 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3443.3576 3779.3247 171697592 nira Nitrogen Assimilatory N reduction NA Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4419.0571 2131.8592 2093.9515 5558.1597 6317.9317 1692.5749 9183.4884 2163.4038 5146.3859 106013321 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5248.9982 29466072 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 258745.6114 355385988 amyA Carbon Cycling Carbon degradation Starch Clostridium clostridioforme 2_1_49FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clostridioforme; 12632.4898 225375377 ppk Phosphorus Polyphosphate synthesis NA Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 3687.988 4615.0682 159046019 poba Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 3929.6176 3813.9777 122726267 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5883.3712 302506415 Sir Sulfur sulfite reduction NA Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 6360.3087 5529.0783 6397.4229 294472061 RgaE Carbon Cycling Carbon degradation Pectin Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 3774.2479 11545461 Rubisco_Alveolata Carbon Cycling Carbon fixation Calvin cycle Symbiodinium sp. superkingdom:Eukaryota;class:Dinophyceae;order:Suessiales;family:Symbiodiniaceae;genus:Symbiodinium; 12597.6115 145317793 pme Carbon Cycling Carbon degradation Pectin Enterobacter sp. 638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 27283.9076 6579.4326 67782665 dsra Sulfur sulfite reduction NA Chlorobium limicola DSM 245 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium limicola; 6174.7224 77378597 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5110.0617 4546.6731 53987086 urec Nitrogen Ammonification NA Bacillus sp. T03-2A superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 5717.444 157845928 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 5834.937 241663454 urec Nitrogen Ammonification NA Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 229350.7978 274046.7076 156112051 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 3864.7177 7640.7272 5610.6307 3237.6299 5632.115 292492950 mer Metal Homeostasis Mercury Detoxification Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 5202.2139 4248.7087 261204309 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 93314.3168 5811.6967 374099813 terc Metal Homeostasis Tellurium Detoxification Streptomyces hygroscopicus subsp. jinggangensis 5008 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces hygroscopicus; 49353.3959 346421700 cmtab Organic Remediation Aromatics Other aromatics Pseudomonas sp. 19-rlim superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 415445.9104 94470781 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7097.6195 118424305 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4892.9267 3889.8768 332308063 xyla Carbon Cycling Carbon degradation Hemicellulose Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 4857.0051 3151.0266 55169.8254 338740783 nasa Nitrogen Assimilatory N reduction NA Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 9280.9384 4392.7458 2135.995 374573065 tktA Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. WSM471 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 18424.4444 161075759 nirb Nitrogen Assimilatory N reduction NA Verrucomicrobiae bacterium V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 55493.9025 154699211 glucoamylase Carbon Cycling Carbon degradation Starch Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 39235.0545 2150.3399 3720.6513 359784630 soxY Sulfur Sulfur Oxidation NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 7526.5935 149823535 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Limnobacter sp. MED105 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Limnobacter; 3784.5284 2256.4135 226092699 catb Organic Remediation Aromatics BTEX and related aromatics Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 8199.3663 226312921 arsc Metal Homeostasis Arsenic Detoxification Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 4089.6219 238753109 ppx Phosphorus Polyphosphate degradation NA Yersinia rohdei ATCC 43380 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia rohdei; 13325.8619 30275.5975 19865.8856 15581.9295 66847502 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 276073.9871 2178.6499 251795355 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4610.5976 194335219 aps_apra Sulfur adenylylsulfate reductase NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 3361.4101 126032287 endochitinase Carbon Cycling Carbon degradation Chitin Hypocrea jecorina superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma; 9715.1909 2439.114 332170272 terc Metal Homeostasis Tellurium Detoxification Krokinobacter sp. 4H-3-7-5 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Krokinobacter; 67626.3185 4147.8794 340527795 pme Carbon Cycling Carbon degradation Pectin Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 4091.4846 73762994 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 828174.6382 254784954 ara Carbon Cycling Carbon degradation Hemicellulose Teredinibacter turnerae T7901 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;genus:Teredinibacter;species:Teredinibacter turnerae; 51143.1997 4081.9824 11271.2487 302336628 amyA Carbon Cycling Carbon degradation Starch Spirochaeta smaragdinae DSM 11293 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta smaragdinae; 3550.1249 5143.5966 8303.9718 2705.5581 2444.4059 2486.0972 6138.3506 2103.3108 3157.2641 3125.1825 4139.9183 15787970 dsrB Sulfur sulfite reduction NA Desulforhabdus amnigena superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 5494.5148 294500334 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus megaterium QM B1551 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 5108.5203 4787.7065 115373383 exochitinase Carbon Cycling Carbon degradation Chitin Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 69580.8102 386007723 terc Metal Homeostasis Tellurium Detoxification Listeria monocytogenes L99 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria monocytogenes; 12722.5245 2267.9651 452453 nirs Nitrogen Denitrification NA Paracoccus denitrificans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 12561.9143 77408306 tehb Metal Homeostasis Tellurium Detoxification Streptococcus agalactiae COH1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus agalactiae; 3630.9639 326947326 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 5426.8027 333789086 B_lactamase_A Virulence Antibiotic resistance Degradation Methylophaga aminisulfidivorans MP superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga;species:Methylophaga aminisulfidivorans; 40130.4512 2817.1234 84787832 linc Organic Remediation Pesticides related compound NA Erythrobacter litoralis HTCC2594 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Erythrobacteraceae;genus:Erythrobacter;species:Erythrobacter litoralis; 4879.6053 157804806 APS_AprB Sulfur adenylylsulfate reductase NA Halochromatium salexigens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Halochromatium; 6897.4561 385888911 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4580.2366 134802465 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8508.9432 371486282 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7059.2433 115433562 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 5635.6363 270210902 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 11204.7232 194335927 SoxA Sulfur Sulfur Oxidation NA Pelodictyon phaeoclathratiforme BU-1 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon phaeoclathratiforme; 4902.1025 381188334 terc Metal Homeostasis Tellurium Detoxification Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 5200.0611 284821861 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3587.8857 67851528 ppx Phosphorus Polyphosphate degradation NA Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 436795.2517 34017194 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3318.6363 184199523 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 4119.9059 302504836 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Arthroderma benhamiae CBS 112371 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma benhamiae; 5369.9418 5961.3351 5434.5256 340804039 catechol_b Organic Remediation Aromatics Other aromatics uncultured Marinobacter sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 42760.1008 8336.5641 333447061 ppx Phosphorus Polyphosphate degradation NA Leuconostoc inhae KCTC 3774 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc inhae; 407277.2776 157845568 tehb Metal Homeostasis Tellurium Detoxification Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 5154.9491 91774903 mauab Organic Remediation Herbicides related compound NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 4612.6466 2029.5269 3420.1103 374324257 amyA Carbon Cycling Carbon degradation Starch Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4882.474 242214006 lactase_fungi Carbon Cycling Carbon degradation Lactose Postia placenta Mad-698-R superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Postia;species:Postia placenta; 12859.8552 2674.5258 372474189 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Opitutaceae bacterium TAV5 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 3612.8179 3193.8011 9225.5951 336430558 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 12278.5296 32265539 IcfA Carbon Cycling Carbon fixation Bacterial Microcompartments Helicobacter hepaticus ATCC 51449 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter hepaticus; 5622.0916 4842.3377 10425.6749 6908.8182 3074.9553 4851.681 359787478 mer Metal Homeostasis Mercury Detoxification Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 3872.942 4318.5996 338801039 mer Metal Homeostasis Mercury Detoxification Pseudomonas stutzeri ATCC 17588 = LMG 11199 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; 3903.5983 7361.6242 116625736 ppx Phosphorus Polyphosphate degradation NA Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 6558.5946 3140.2744 342878070 ara Carbon Cycling Carbon degradation Hemicellulose Fusarium oxysporum Fo5176 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Fusarium oxysporum; 4451.0796 284447392 nitrate_reductase Nitrogen N Assimilation NA Nitzschia cf. pusilla superkingdom:Eukaryota;phylum:Bacillariophyta;class:Bacillariophyceae;family:Bacillariaceae;genus:Nitzschia; 10145.6512 154700840 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 8549.4929 5660.9574 70993186 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 21807.4298 3020.3945 6264.0045 795282.6693 2661.3753 227822911 amyA Carbon Cycling Carbon degradation Starch Sinorhizobium fredii NGR234 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 4347.7076 3976.9839 1951.6068 3291.2802 156115934 phospholipase_B_fungi virulence degradation NA Vanderwaltozyma polyspora DSM 70294 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Vanderwaltozyma;species:Vanderwaltozyma polyspora; 3552.8316 261202240 protease_serine_fungi Carbon Cycling Carbon degradation protein Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 5908.342 5940.7189 4349.9078 49786.7726 8671004 dsrB Sulfur sulfite reduction NA Desulfobacter vibrioformis superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter; 7390.0405 4820.6286 387857069 amyA Carbon Cycling Carbon degradation Starch Emticicia oligotrophica DSM 17448 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; 7421.3226 41406443 linb Organic Remediation Pesticides related compound NA Mycobacterium avium subsp. paratuberculosis K-10 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 7339.6915 15191.5317 422313973 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4526.5561 313679304 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Oceanithermus profundus DSM 14977 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Oceanithermus;species:Oceanithermus profundus; 4801.9881 320103271 terc Metal Homeostasis Tellurium Detoxification Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 3657.0382 149142497 tktA Carbon Cycling Carbon fixation Calvin cycle Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 32814.3483 157369630 amyA Carbon Cycling Carbon degradation Starch Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 5903.3587 2391.3091 357040708 ben_bcla virulence NA NA Desulfotomaculum gibsoniae DSM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum gibsoniae; 3780.6596 74468.8918 392455282 nifh Nitrogen Nitrogen fixation NA Pelosinus fermentans DSM 17108 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Pelosinus;species:Pelosinus fermentans; 4504.5291 2514.9215 291326863 arsc Metal Homeostasis Arsenic Detoxification Providencia rettgeri DSM 1131 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia rettgeri; 6932.4468 364505651 hzsa Nitrogen Anammox NA Candidatus Scalindua sp. enrichment culture clone 15L superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Scalindua; 3935.0591 5758.8684 15839062 atza Organic Remediation Herbicides related compound NA Xylella fastidiosa 9a5c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 9853.8214 5835.7582 192897532 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 4240.1928 3921.3238 39741.2905 2108.309 6620.7188 15899174 MCM_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Sulfolobus solfataricus P2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus solfataricus; 6929.0233 163749605 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Shewanella benthica KT99 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella benthica; 3756.4529 1982.9092 7892.5492 70985811 amyA Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 4169.4124 14090309 dsrB Sulfur sulfite reduction NA Desulfovibrio cuneatus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 8335.2833 319419283 tehb Metal Homeostasis Tellurium Detoxification Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 7813.2042 153874522 sqr Sulfur Sulfide Oxidation NA Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 4284.5357 374386939 amyA Carbon Cycling Carbon degradation Starch Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 5042.3459 304315873 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Thermoanaerobacterium thermosaccharolyticum DSM 571 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium thermosaccharolyticum; 4813.6057 333397306 ppx Phosphorus Polyphosphate degradation NA Leuconostoc gelidum KCTC 3527 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gelidum; 4044.1957 251795520 endochitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 4489.6751 4109.9071 297374674 beta_agarase Carbon Cycling Carbon degradation Agar Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 16972.9829 338784304 cox1_Viridiplantae Other Phylogenetic NA Bracteacoccus giganteus superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Sphaeropleales;genus:Bracteacoccus; 15328.9836 304442663 xylanase Carbon Cycling Carbon degradation Hemicellulose Penicillium oxalicum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 15932.7694 14269.7706 15015.7271 116013368 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 360451.3548 23694.1995 134142937 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4658.6442 48835 xyla Carbon Cycling Carbon degradation Hemicellulose Staphylococcus xylosus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus; 6927.7631 375146903 RgaE Carbon Cycling Carbon degradation Pectin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 6707.4351 4660.7504 389872271 urec Nitrogen Ammonification NA Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 3761.3992 2610.5502 13231.8463 332682685 ara Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 12631.7896 7361.9063 5084.3402 6310.5948 332685989 pme Carbon Cycling Carbon degradation Pectin Melissococcus plutonius ATCC 35311 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Melissococcus;species:Melissococcus plutonius; 3799.4287 4338.7914 5618.0314 12533.7039 3729.9528 385267898 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. A01 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5326.578 146188527 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6093.3342 4179.1342 390567648 nitrilase Organic Remediation Aromatics Other aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 4101.222 5463.8452 3936.0901 2656.0367 9479.4346 357404521 norb Nitrogen Denitrification NA Methylomicrobium alcaliphilum superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylomicrobium; 13730.209 353549089 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 5643.977 3543.8609 17716.4733 139003375 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5183.823 7390.3121 14267.6526 5243.6752 2773.5305 14252.6023 121708758 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 3425.8249 3129.779 342241063 ppx Phosphorus Polyphosphate degradation NA Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 11451.6458 223714280 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 6144.3019 408780493 linb Organic Remediation Pesticides related compound NA Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 16236.343 7799.7495 299767074 axe Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7587.9253 226310791 B_lactamase_A Virulence Antibiotic resistance Degradation Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 7979.0779 296454725 xylanase Carbon Cycling Carbon degradation Hemicellulose Bifidobacterium longum subsp. longum JDM301 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 3871.8376 2898.0966 3135.6711 3661.9151 2554.581 374627960 ppx Phosphorus Polyphosphate degradation NA Methanoplanus limicola DSM 2279 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus limicola; 3724.5716 403068597 catb Organic Remediation Aromatics BTEX and related aromatics Oceanobacillus sp. Ndiop superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Oceanobacillus; 4743.264 142688 chitinase Carbon Cycling Carbon degradation Chitin Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3943.472 4621.8663 2699.9129 4681.0594 365122859 pme Carbon Cycling Carbon degradation Pectin Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 4801.5014 5936.943 328451105 catechol_b Organic Remediation Aromatics Other aromatics Marinithermus hydrothermalis DSM 14884 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Marinithermus;species:Marinithermus hydrothermalis; 7921.586 2204.9281 89473612 aoxb Metal Homeostasis Arsenic Detoxification arsenite-oxidising beta proteobacterium WA19 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 8212.4078 1741.1554 4590.5455 56180266 alkk Organic Remediation Others NA Idiomarina loihiensis L2TR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina loihiensis; 15555.4321 324318380 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 11253.7894 6002.7349 2446.1707 3838.2829 304436907 nifh Nitrogen Nitrogen fixation NA Selenomonas sp. oral taxon 149 str. 67H29BP superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 149; 15588.0407 296131352 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulomonas flavigena DSM 20109 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:Cellulomonas flavigena; 6253.7621 8016.5902 5594.4043 4920.0058 365122099 amyA Carbon Cycling Carbon degradation Starch Tannerella sp. 6_1_58FAA_CT1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Tannerella; 12734.303 34017062 mcra Carbon Cycling Methane Methanogenesis Methanothermococcus okinawensis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanothermococcus; 7782.3049 380879486 b_lactamase Virulence Antibiotic resistance Degradation Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 5051.3576 126737915 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5567.1112 90413464 amyA Carbon Cycling Carbon degradation Starch Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 3695.2215 115367113 pchcf Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 5595.8407 70779193 xylg Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas pseudoalcaligenes KF707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas pseudoalcaligenes; 44657.7019 20555.5028 6502.1943 298554940 amyA Carbon Cycling Carbon degradation Starch Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 18615.549 333448772 nifh Nitrogen Nitrogen fixation NA Leptolyngbya sp. LCRNK_19 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 4647.4977 6306.2556 357974394 mannanase Carbon Cycling Carbon degradation Hemicellulose Sphingomonas sp. KC8 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 8642.4171 3793.646 6184.8465 5005.5706 87123936 nifh Nitrogen Nitrogen fixation NA Synechococcus sp. RS9917 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 49986.2478 307545444 narg Nitrogen Denitrification NA Halomonas elongata DSM 2581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas;species:Halomonas elongata; 4753.356 4976.5381 4818.942 3064.8893 3866.3037 1762.6845 3835.3341 4795.8305 363582301 mannanase Carbon Cycling Carbon degradation Hemicellulose Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 46232.8932 24379928 amyA Carbon Cycling Carbon degradation Starch Streptococcus mutans UA159 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus mutans; 7262.5917 346985949 gdh Nitrogen Ammonification NA Candidatus Arthromitus sp. SFB-rat-Yit superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Candidatus Arthromitus; 6347.0198 152972032 terc Metal Homeostasis Tellurium Detoxification Klebsiella pneumoniae subsp. pneumoniae MGH 78578 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella pneumoniae; 4146.7707 145961412 amyA Carbon Cycling Carbon degradation Starch Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 5994.4748 217336023 chitinase Carbon Cycling Carbon degradation Chitin Dictyoglomus turgidum DSM 6724 superkingdom:Bacteria;phylum:Dictyoglomi;class:Dictyoglomia;order:Dictyoglomales;family:Dictyoglomaceae;genus:Dictyoglomus;species:Dictyoglomus turgidum; 62109.0415 3248.817 332172735 ppx Phosphorus Polyphosphate degradation NA Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 6197.1872 228607983 amyA Carbon Cycling Carbon degradation Starch Bacillus cereus MM3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 7979.1779 189219593 arsc Metal Homeostasis Arsenic Detoxification Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 5594.8059 289548927 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 3558.2554 5541.0463 5022.4592 5810.8287 259485685 pec_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 5268.7827 373495520 atza Organic Remediation Herbicides related compound NA Eubacterium infirmum F0142 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XIII. Incertae Sedis;species:[Eubacterium] infirmum; 3983.2296 119366853 cellobiase Carbon Cycling Carbon degradation Cellulose Rhizoctonia solani superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Cantharellales;family:Ceratobasidiaceae;genus:Thanatephorus;species:Thanatephorus cucumeris; 1380467.0284 220935414 arsc Metal Homeostasis Arsenic Detoxification Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 16508.8218 323281815 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3501.1343 9094.3709 66351662 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 29042.2041 5205.4698 197087974 ppx Phosphorus Polyphosphate degradation NA Geobacter bemidjiensis Bem superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter bemidjiensis; 4032.1903 67925240 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 5241.8954 358401677 pcpe Organic Remediation Herbicides related compound NA Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 3869.9733 2102.6419 10370.5824 88790269 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 19598.6255 379643623 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 32135.7063 10387.6029 150858312 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 84162.8199 29305.9083 163811628 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 600826.2321 4019.3804 374992676 xylanase Carbon Cycling Carbon degradation Hemicellulose Streptomyces bingchenggensis BCW-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces bingchenggensis; 3824.5244 295661326 amyA Carbon Cycling Carbon degradation Starch Paracoccidioides brasiliensis Pb01 NA 11633.4062 381202282 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium yanoikuyae XLDN2-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium yanoikuyae; 4391.3321 1978.5996 18149179 badh Organic Remediation Aromatics Other aromatics Trametes versicolor superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 11689.2482 3821271 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium simplicissimum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 9970.2661 20022.8214 383755626 narg Nitrogen Denitrification NA Selenomonas ruminantium subsp. lactilytica TAM6421 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas ruminantium; 4053.1047 313992.3551 346223599 xyla Carbon Cycling Carbon degradation Hemicellulose Anaerophaga thermohalophila DSM 12881 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga;species:Anaerophaga thermohalophila; 4641.0822 5279.8016 3835.3881 3043.6204 374620853 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3474.621 299771088 urec Nitrogen Ammonification NA Acinetobacter oleivorans DR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter oleivorans; 26597.6402 37485.2755 305856414 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3889.382 2106.4327 4317.6506 6486.5082 2820.0392 3536.8756 299820825 cellobiase Carbon Cycling Carbon degradation Cellulose Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 3434.5651 4440.8864 4531.0783 2469.9909 408781918 phta Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium kansasii ATCC 12478 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii; 5185.6051 11284.2552 12903.638 4508.5323 3090.7649 13165.3476 1732457 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4838.0435 157372233 phenol_oxidase Carbon Cycling Carbon degradation Lignin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 4023.6995 4988.0344 108407.9488 4230.9385 37753.4394 208936496 dsrB Sulfur sulfite reduction NA uncultured prokaryote 60849.4838 8836.9912 4514.6542 374349044 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6779.5446 5225.2936 254041323 phytase Phosphorus Phytic acid hydrolysis NA Hirschia baltica ATCC 49814 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Hirschia;species:Hirschia baltica; 5528.3373 310764157 tktA Carbon Cycling Carbon fixation Calvin cycle Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 12919.9067 4318.0032 5501.1471 308071355 amyA Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 3731.0651 7393.7292 94988217 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptococcus phage 9429.1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pyogenes; 8876.0449 16798095 mcra Carbon Cycling Methane Methanogenesis Methanobacterium formicicum superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium; 10391.8486 46409933 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14001.0758 298553821 PRK Carbon Cycling Carbon fixation Calvin cycle Thermosynechococcus vulcanus superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus; 5637.6964 5725214 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 9474.3589 2659.8202 398309487 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus mojavensis RO-H-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus mojavensis; 70111.8819 9156.3119 76666801 APS_AprB Sulfur adenylylsulfate reductase NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 51730.0684 8368.6066 372266265 amyA Carbon Cycling Carbon degradation Starch Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 4562.3775 310869184 phytase Phosphorus Phytic acid hydrolysis NA Bacillus atrophaeus 1942 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus atrophaeus; 127676.8786 379988733 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 38553.8143 39575102 ppk Phosphorus Polyphosphate synthesis NA Bdellovibrio bacteriovorus HD100 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Bdellovibrionales;family:Bdellovibrionaceae;genus:Bdellovibrio;species:Bdellovibrio bacteriovorus; 3723.7822 114308703 arylest Organic Remediation Aromatics Other aromatics Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 4375.6887 71013753 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 4316.1621 383492889 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechocystis sp. PCC 6803 substr. PCC-N superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 26032.8074 328530313 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 3444.4068 5125.1361 326650773 amyA Carbon Cycling Carbon degradation Starch Aerococcus urinae ACS-120-V-Col10a superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Aerococcus;species:Aerococcus urinae; 5015.9696 330688076 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 11916.1653 352095277 tktA Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 8016 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4195.3163 4031.3426 2538.8828 3657.1977 157320547 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Serratia proteamaculans 568 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia proteamaculans; 3948.414 70988651 badh Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 20623.2203 296921866 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 7158.7131 74602.2107 2897.0237 4078.2014 14441.0259 404435065 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 5512.849 383282920 amyA Carbon Cycling Carbon degradation Starch Streptococcus salivarius PS4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 4361.2036 46121271 ppx Phosphorus Polyphosphate degradation NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 6962.2153 392409165 rd Organic Remediation Chlorinated solvents NA Desulfomonile tiedjei DSM 6799 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile;species:Desulfomonile tiedjei; 12460.5264 225003238 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacteria bacterium MS024-2A superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria; 8013.3277 9630.2737 2792.1309 2493.7379 5220.104 157804760 aps_apra Sulfur adenylylsulfate reductase NA Thiobacillus plumbophilus superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Hydrogenophilales;family:Hydrogenophilaceae;genus:Thiobacillus; 3788.5388 6002.7804 3405.3944 158312048 gdh Nitrogen Ammonification NA Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 4468.7902 253687182 tehb Metal Homeostasis Tellurium Detoxification Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 4225.7185 58732.9062 4998.3032 2138.6685 212539233 nagg Organic Remediation Aromatics Aromatic carboxylic acid Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4993.7785 4377.8549 5410.0085 402816134 bphF1 Organic Remediation Aromatics Polycyclic aromatics Paenibacillus alvei DSM 29 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus alvei; 25056.3717 142435 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4986.8559 90654477 glucoamylase Carbon Cycling Carbon degradation Starch Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 44678.1444 378570218 mannanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 4539.4032 2705.8277 154449709 exoglucanase Carbon Cycling Carbon degradation Cellulose Fusicoccum sp. BCC4124 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Fusicoccum; 4157.7051 220683724 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 1457658.6548 221155779 terc Metal Homeostasis Tellurium Detoxification Thermomicrobium roseum DSM 5159 superkingdom:Bacteria;phylum:Chloroflexi;class:Thermomicrobia;order:Thermomicrobiales;family:Thermomicrobiaceae;genus:Thermomicrobium;species:Thermomicrobium roseum; 28533.2873 16503.6548 6883.622 312884261 ppx Phosphorus Polyphosphate degradation NA Vibrio caribbenthicus ATCC BAA-2122 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio caribbenthicus; 9282.9198 67527724 rgl Carbon Cycling Carbon degradation Pectin Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 4126.7189 301113542 hsp90_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 4590.661 319742309 FBPase Carbon Cycling Carbon fixation Calvin cycle Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 4375.2155 313137071 arsc Metal Homeostasis Arsenic Detoxification Bacteroides fragilis 3_1_12 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fragilis; 120682.5865 89085573 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 17665.6859 9617.0746 88643138 dsra Sulfur sulfite reduction NA uncultured prokaryote 4384.6227 310821421 amyA Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 10027.2589 342796626 ppx Phosphorus Polyphosphate degradation NA Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 8985.5989 5065.1061 2459568 dsra Sulfur sulfite reduction NA Pyrobaculum islandicum superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum islandicum; 6270.4598 6659.1521 254836166 pme Carbon Cycling Carbon degradation Pectin Bacteroides sp. 4_3_47FAA superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 86820.4487 189433030 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides coprocola DSM 17136 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides coprocola; 4860.6518 294884079 aoxb Metal Homeostasis Arsenic Detoxification bacterium enrichment culture clone aoxauto196_4W superkingdom:Bacteria; 1132275.22 11451.3642 144166 xylanase Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio; 3561.6454 121495556 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1581289.8528 7108.7003 213013134 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3794.8029 2989.9009 2618.3659 2405.8153 322718597 phenol_oxidase Carbon Cycling Carbon degradation Lignin Flammulina velutipes superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Physalacriaceae;genus:Flammulina; 4494.2865 307646232 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4007.2395 153956092 apu Carbon Cycling Carbon degradation Starch Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 5628.0664 359454433 beta_agarase Carbon Cycling Carbon degradation Agar Pseudoalteromonas sp. BSi20495 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 5095.5824 307129342 terc Metal Homeostasis Tellurium Detoxification Dickeya dadantii 3937 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 486878.6466 3266.2426 195933364 ccl Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobaculum sp. Y04AAS1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobaculum; 3949.939 1855.8954 6860.9942 323464080 ppx Phosphorus Polyphosphate degradation NA Staphylococcus pseudintermedius ED99 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pseudintermedius; 22907.8213 4465.3237 363580032 amyA Carbon Cycling Carbon degradation Starch Flavobacteriaceae bacterium HQM9 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 4404.5361 4419.3485 307689762 amyA Carbon Cycling Carbon degradation Starch Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 5450.4458 6400.235 4046.734 307770628 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 3493.9038 850646.7043 14315.5324 380692737 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides faecis MAJ27 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides faecis; 7670.0861 2970.003 5740.4252 345899224 chitinase Carbon Cycling Carbon degradation Chitin Dorea formicigenerans 4_6_53AFAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 3979.8314 373488951 terc Metal Homeostasis Tellurium Detoxification Holophaga foetida DSM 6591 superkingdom:Bacteria;phylum:Acidobacteria;class:Holophagae;order:Holophagales;family:Holophagaceae;genus:Holophaga;species:Holophaga foetida; 10410.1521 8608.1577 254425109 Sir Sulfur sulfite reduction NA Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5607.3903 170111292 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 43384.2149 209517856 one_ring_12diox Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 24381.3095 32895202 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8238.2294 1697.292 372266273 amyA Carbon Cycling Carbon degradation Starch Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 3786.3637 126035177 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 28384.1711 217977751 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 166451.7035 385343397 sqr Sulfur Sulfide Oxidation NA Sulfurovum sp. AR superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;genus:Sulfurovum; 9208.2399 254506258 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1227196.6748 374630658 nifh Nitrogen Nitrogen fixation NA Methanoplanus limicola DSM 2279 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales;family:Methanomicrobiaceae;genus:Methanoplanus;species:Methanoplanus limicola; 8682.4934 2342.198 83941449 mer Metal Homeostasis Mercury Detoxification Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 3695.5043 9970.0372 5242.5153 5563.5777 327410225 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 33132.8184 22582.0577 384555936 ppx Phosphorus Polyphosphate degradation NA Helicobacter cetorum MIT 00-7128 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter cetorum; 3952.6394 148257632 FBPase Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4442.26 3011.4889 37548728 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 12575.9602 154488290 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium adolescentis L2-32 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium adolescentis; 7685.3189 87281203 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6386.962 384262483 terc Metal Homeostasis Tellurium Detoxification Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 94320.4167 77820056 nirs Nitrogen Denitrification NA uncultured organism 4543.3253 148834783 ppx Phosphorus Polyphosphate degradation NA Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 65848.5423 15115.0055 5020.4221 48478299 fccab Sulfur Sulfide Oxidation NA Picrophilus torridus DSM 9790 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Picrophilaceae;genus:Picrophilus;species:Picrophilus torridus; 5468.0065 4565.0933 1958.4278 2774.1643 186660321 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4390.2415 111225183 ppk Phosphorus Polyphosphate synthesis NA Frankia alni ACN14a superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia;species:Frankia alni; 223711.7978 290964786 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter mustelae 12198 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter mustelae; 15565.3321 150036100 soxY Sulfur Sulfur Oxidation NA Thiolamprovum pedioforme superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiolamprovum; 9772.667 3516.3226 162568547 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4966.3134 289184004 nifh Nitrogen Nitrogen fixation NA Clostridiales genomosp. BVAB3 str. UPII9-5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;species:Clostridiales genomosp. BVAB3; 5936.5481 3018.6361 6495.3446 5587.5238 3586.1356 3627.4403 5634.6984 289156904 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Peptostreptococcus anaerobius 653-L superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;genus:Peptostreptococcus;species:Peptostreptococcus anaerobius; 8197.383 326797273 xylc Organic Remediation Aromatics BTEX and related aromatics Marinomonas mediterranea MMB-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas;species:Marinomonas mediterranea; 3822.6881 6518.4905 5973.8442 4435.4934 7189203 amyA Carbon Cycling Carbon degradation Starch Chlamydophila pneumoniae AR39 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiia;order:Chlamydiales;family:Chlamydiaceae;genus:Chlamydia;species:Chlamydia pneumoniae; 11738.5577 315001906 aoxb Metal Homeostasis Arsenic Detoxification uncultured beta proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria; 6344.2224 7482.9351 1870.6657 158437029 trzn Organic Remediation Herbicides related compound NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 4311.314 218142839 dsra Sulfur sulfite reduction NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 4030.3931 8770.0936 4994.6954 4006.6374 307590721 glucoamylase Carbon Cycling Carbon degradation Starch Aureobasidium pullulans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Dothideales;family:Dothioraceae;genus:Aureobasidium; 4028.1005 223998706 EF1a_Stramenopiles Other Phylogenetic NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 7346.1534 323366184 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5519.4925 327549840 dehh109 Organic Remediation Chlorinated solvents NA Alteromonas macleodii str. 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 5489.4506 14833.5528 8693.8076 5125.1716 4889.9933 89113927 glx Carbon Cycling Carbon degradation Lignin Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; 7952.4745 5047.6647 4692.6057 4475.2341 1989.2522 91227368 amyA Carbon Cycling Carbon degradation Starch Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 5689.3426 2095.3947 257784425 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Atopobium parvulum DSM 20469 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Atopobium;species:Atopobium parvulum; 4004.5609 254506578 nirb Nitrogen Assimilatory N reduction NA Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 4787.2252 29293186 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9076.9798 4420.675 1797.07 295055487 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 9520.43 5962.0796 25629.7539 391860802 bphb Organic Remediation Aromatics Polycyclic aromatics Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 22436.9922 338171226 alkk Organic Remediation Others NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 4371.2273 126736229 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. CCS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6861.0526 3449.6382 213960738 ara Carbon Cycling Carbon degradation Hemicellulose Propionibacterium acnes SK137 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 5085.4052 3866.729 209546058 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4567.177 239586599 nirk Nitrogen Denitrification NA Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 5026.9681 976370 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Ralstonia eutropha H16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 23291.9733 403657877 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 4448.47 4651.7003 3616.4552 33319.9918 126436645 one_ring_12diox Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 4472.6263 307152738 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6993.3208 333891881 alginase Carbon Cycling Carbon degradation Alginate Alteromonas sp. SN2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas; 4160.826 243083201 pula Carbon Cycling Carbon degradation Starch Clostridium botulinum E1 str. 'BoNT E Beluga' superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium botulinum; 9113.0195 74525.0905 346644293 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4186.4166 5242.7522 4868.6731 3786.0385 32399643 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus sajor-caju superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 47847.8131 359298072 fccab Sulfur Sulfide Oxidation NA Halomonas sp. GFAJ-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8360.2267 2358.113 7437.8287 3872.2183 14765.1345 271963455 chitinase Carbon Cycling Carbon degradation Chitin Streptosporangium roseum DSM 43021 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptosporangiaceae;genus:Streptosporangium;species:Streptosporangium roseum; 20486.2964 199594037 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5046.6865 270298546 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 13659.4206 87283942 urec Nitrogen Ammonification NA Synechococcus sp. WH 5701 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4100.9773 145847619 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Ruminococcus torques ATCC 27756 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] torques; 4962.9373 218223343 amyA Carbon Cycling Carbon degradation Starch Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 4357.1418 2808.0202 15676.8444 338208835 pcpe Organic Remediation Herbicides related compound NA Acidiphilium sp. PM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 49407.5468 18900.3749 253777904 amyA Carbon Cycling Carbon degradation Starch Clostridium perfringens str. 13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 4959.2656 5762.9776 335343329 arylest Organic Remediation Aromatics Other aromatics Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 5528.1246 345528643 nbac Organic Remediation Aromatics Nitoaromatics Flavobacterium branchiophilum FL-15 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium branchiophilum; 4922.1026 4965.9904 4707.8034 2231.213 323460147 dsra Sulfur sulfite reduction NA Desulfovibrio desulfuricans ND132 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 4951.3662 5647.7005 33415451 mcra Carbon Cycling Methane Methanogenesis Methanothermobacter wolfeii superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 5945.646 163839191 amyA Carbon Cycling Carbon degradation Starch Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 11456.5318 3967.7282 145340736 actin_Viridiplantae Other Phylogenetic NA Ostreococcus lucimarinus CCE9901 NA 7049.9523 3178.1895 17385105 narg Nitrogen Denitrification NA Bacillus sp. Lgg10.6 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 36965.1161 163929795 dsra Sulfur sulfite reduction NA Desulfovibrionaceae bacterium MSL79 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 5254.0581 5010.537 223694281 dsra Sulfur sulfite reduction NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 4643.4967 379650246 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 10676.8048 10495.4245 365754698 terc Metal Homeostasis Tellurium Detoxification Elizabethkingia anophelis Ag1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia;species:Elizabethkingia anophelis; 4621.5603 297616984 arsc Metal Homeostasis Arsenic Detoxification Syntrophothermus lipocalidus DSM 12680 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophothermus;species:Syntrophothermus lipocalidus; 4119.4276 118062286 catechol_b Organic Remediation Aromatics Other aromatics Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 32829.1754 2900.8243 25700.9564 6501.7666 3472.5206 300865517 nirb Nitrogen Assimilatory N reduction NA Oscillatoria sp. PCC 6506 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria; 5382.4033 222354244 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 4721.1791 335878918 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Rheinheimera sp. A13L superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera; 5363.0029 299772656 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 4235.9495 32951.5068 2644.9522 3776.7446 363714540 gdh Nitrogen Ammonification NA Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 65454.6637 50120959 narg Nitrogen Denitrification NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 6870.4863 257286422 ligninase Carbon Cycling Carbon degradation Lignin Dichomitus squalens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus; 16517.3365 3428.8218 229380081 pgk Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 6913.9397 241366232 terc Metal Homeostasis Tellurium Detoxification Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 5904.2643 47155116 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 6396.3286 5411.3455 160427888 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4310.1233 2338.1106 198275282 nrfa Nitrogen Dissimilatory N reduction NA Bacteroides plebeius DSM 17135 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides plebeius; 4600.2389 3151.6467 9258.9098 7808.1216 18113.4203 330811553 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 9585.4431 400199526 catb Organic Remediation Aromatics BTEX and related aromatics Achromobacter piechaudii HLE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 5383.4794 118424403 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6944.9849 241366771 ppx Phosphorus Polyphosphate degradation NA Acidovorax delafieldii 2AN superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax delafieldii; 4711.7419 3960.1966 292664058 dmdA Sulfur DMSP degradation NA Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 17978.7272 189199408 mannanase Carbon Cycling Carbon degradation Hemicellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 6977.7208 2011.9846 134055978 xylanase Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 5882.6477 2207.9945 2059.5503 5120.5467 16304109 ppk Phosphorus Polyphosphate synthesis NA Aphanizomenon sp. TR183 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Aphanizomenon;species:Aphanizomenon flos-aquae; 9762.7339 402486530 B_lactamase_A Virulence Antibiotic resistance Degradation Rhizobium sp. CCGE 510 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 6980.515 6189.0247 298234441 ppx Phosphorus Polyphosphate degradation NA 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 13710.8908 15074851 xylanase Carbon Cycling Carbon degradation Hemicellulose Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; 13215.3555 71145613 napa Nitrogen Dissimilatory N reduction NA Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 129452.3658 6683.6499 7743.3368 147886252 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 5708.6218 7991.0531 304368236 ara Carbon Cycling Carbon degradation Hemicellulose Rhodanobacter ginsenosidimutans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Rhodanobacter; 3917.7683 1587.1198 378728948 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Exophiala dermatitidis NIH/UT8656 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Chaetothyriales;family:Herpotrichiellaceae;genus:Exophiala;species:Exophiala dermatitidis; 5048.421 331006622 mer Metal Homeostasis Mercury Detoxification gamma proteobacterium IMCC1989 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales; 5746.1162 118567780 dsrB Sulfur sulfite reduction NA Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 5741.478 17070.2231 148347.4681 326331710 amyA Carbon Cycling Carbon degradation Starch Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 4197.6266 16314.4191 167623082 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella halifaxensis HAW-EB4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella halifaxensis; 7550.6335 299775795 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 4370.9915 198282830 PRK Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus ferrooxidans ATCC 53993 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 6008.4761 4234.3508 5307.5695 371985920 ara Carbon Cycling Carbon degradation Hemicellulose Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 6561.6652 156867136 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 14053.2585 251788857 ppx Phosphorus Polyphosphate degradation NA Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 5335.3294 283818045 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Spirosoma linguale DSM 74 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Spirosoma;species:Spirosoma linguale; 8379.7599 11447.8516 83951907 ppx Phosphorus Polyphosphate degradation NA Roseovarius nubinhibens ISM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius;species:Roseovarius nubinhibens; 22829.2021 7312.8323 3300.7506 29606909 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 5216.1617 6135.5818 7998.9914 372101208 amyA Carbon Cycling Carbon degradation Starch Marinitoga piezophila KA3 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Marinitoga;species:Marinitoga piezophila; 4630.1983 302669699 ara Carbon Cycling Carbon degradation Hemicellulose Butyrivibrio proteoclasticus B316 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio proteoclasticus; 5825.5212 300245965 badh Organic Remediation Aromatics Other aromatics Clostridia bacterium enrichment culture clone BF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia; 10184.7651 302679676 glucoamylase Carbon Cycling Carbon degradation Starch Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4910.5867 212532211 nitrate_reductase Nitrogen N Assimilation NA Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 9049.4028 4461.2842 322411423 amyA Carbon Cycling Carbon degradation Starch Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus dysgalactiae; 84061.069 126659647 cda Carbon Cycling Carbon degradation Starch Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4490.4091 294812281 pula Carbon Cycling Carbon degradation Starch Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 13554.5891 189200274 axe Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 18820.3193 2924.202 338212827 ara Carbon Cycling Carbon degradation Hemicellulose Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 4532.6371 324316965 amyA Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 14316.1962 6255.1212 383842150 cpnc Organic Remediation Other Hydrocarbons NA Rhodococcus imtechensis RKJ300 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus imtechensis; 10860.3565 317970139 terc Metal Homeostasis Tellurium Detoxification Synechococcus sp. CB0205 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 20946.8663 296825182 sdsa Organic Remediation Others NA Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 9059.775 283776066 aoxb Metal Homeostasis Arsenic Detoxification Thiomonas delicata superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Thiomonas; 4778.5291 4097.5873 2617.0272 3809.3559 6902.9765 2040.2688 2911.5857 3960.114 2334.1327 119371708 narg Nitrogen Denitrification NA Desulfuromusa kysingii superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Desulfuromonadaceae;genus:Desulfuromusa; 4131.337 331696085 cdh Carbon Cycling Carbon degradation Terpenes Pseudonocardia dioxanivorans CB1190 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia;species:Pseudonocardia dioxanivorans; 4643.6229 2807.5924 3269.8493 1871132 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Chondrostereum purpureum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Chondrostereum; 7636.0117 2577.1733 115400505 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 17002.5199 5410.9562 89277306 rgh Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4856.9657 9173.3943 151302328 APS_AprB Sulfur adenylylsulfate reductase NA Desulfomonile tiedjei superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfomonile; 18829.1298 407711512 bphF1 Organic Remediation Aromatics Polycyclic aromatics Burkholderia phenoliruptrix BR3459a superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia phenoliruptrix; 8295.8948 1778.2897 197726229 dsrB Sulfur sulfite reduction NA bacterium enrichment culture clone NKeSA1 superkingdom:Bacteria; 8367.6386 32733.6248 4686.3285 389875760 linc Organic Remediation Pesticides related compound NA Tistrella mobilis KA081020-065 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Tistrella;species:Tistrella mobilis; 9356.5496 357384761 poba Organic Remediation Aromatics Aromatic carboxylic acid Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 5913.1464 213014869 amyA Carbon Cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 6281.1606 2659.9839 151357400 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 11163.3412 32431.7265 90579340 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 4372.4317 374813422 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 4626.4323 8311.7355 2215.5094 218260063 ara Carbon Cycling Carbon degradation Hemicellulose Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 6746.3582 3035.8756 332304636 cysJ Sulfur Reduction NA Glaciecola agarilytica 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 7046.7372 5492.2724 291196976 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 4486.9191 151302116 APS_AprB Sulfur adenylylsulfate reductase NA Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 4693.717 8861.545 4640.701 387137745 norb Nitrogen Denitrification NA Corynebacterium pseudotuberculosis CIP 52.97 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 5809.958 5094.1571 226319580 pcag Organic Remediation Aromatics Other aromatics Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 6324.6371 2405.8976 383125367 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides sp. 1_1_6 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 5941.8661 37548710 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9127.0347 302193076 ppx Phosphorus Polyphosphate degradation NA Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 10931.9493 75676878 FBPase Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 10277.0897 12417.3665 1729.1486 357259122 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Staphylococcus simiae CCM 7213 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus simiae; 6371.8155 222354270 hao Nitrogen Nitrification NA uncultured bacterium superkingdom:Bacteria; 278321.0591 257341.75285 284006644 nitrilase Organic Remediation Aromatics Other aromatics Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 4874.2372 189202342 glx Carbon Cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 13071.8995 320536258 chitinase Carbon Cycling Carbon degradation Chitin Treponema phagedenis F0421 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema phagedenis; 8115.4091 237785375 amyA Carbon Cycling Carbon degradation Starch Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 5703.828 6563.2514 4803.7153 126035057 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7679.8259 19870.1794 149375960 alginase Carbon Cycling Carbon degradation Alginate Marinobacter algicola DG893 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter algicola; 5881.674 1761.402 25036.1664 299535006 alkk Organic Remediation Others NA Lysinibacillus fusiformis ZC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus fusiformis; 7308.7844 98506.6364 366164132 amyA Carbon Cycling Carbon degradation Starch Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 5468.4253 7489.9425 58201580 pgk Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. OZK11 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 4651.4339 5552.2466 6003.5937 4124.5343 345043929 pula Carbon Cycling Carbon degradation Starch Prevotella sp. C561 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 14928.7103 154088173 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 7891.1597 6322.4263 7330.7461 5743.8971 7558.4356 6493.6188 221535796 pgk Carbon Cycling Carbon fixation Calvin cycle Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4795.1822 4080.4432 9012.6316 54308915 amyA Carbon Cycling Carbon degradation Starch Photobacterium profundum SS9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 38134.6687 5708.7939 1924.7579 302037728 ppx Phosphorus Polyphosphate degradation NA Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 6021.8418 46981114 nirs Nitrogen Denitrification NA Marinobacter sp. R171 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4217.8664 148474694 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 5335.4246 313105092 dsra Sulfur sulfite reduction NA uncultured prokaryote 7780.8167 302676590 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4566.1117 653123.2313 221535518 alkk Organic Remediation Others NA Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 9816.8356 219679201 cpna Organic Remediation Other Hydrocarbons NA gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4483.2231 3518.2039 2872.2043 8556.0027 2193.3361 2760.7549 422314137 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12032.2905 302404210 cellobiase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 38491.3453 410461233 nosz Nitrogen Denitrification NA Bacillus azotoformans LMG 9581 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus azotoformans; 11687.3175 99083121 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4274.7827 37528.6051 375080063 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 5435.6401 292675431 catechol Organic Remediation Aromatics Other aromatics Sphingobium japonicum UT26S superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium japonicum; 4086.3624 11227.7646 9827.668 2348.4702 4114.1663 313121057 pula Carbon Cycling Carbon degradation Starch Streptococcus pseudoporcinus SPIN 20026 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pseudoporcinus; 5138.3619 209958355 alkj Organic Remediation Other Hydrocarbons NA Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 5170.354 17915.7488 109625897 nira Nitrogen Assimilatory N reduction NA Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 38459.5679 4948.8167 2276.1213 20142095 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7019.5275 4376.4696 4450.2279 22796202 nirs Nitrogen Denitrification NA gamma proteobacterium C10-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 8146.7075 309389387 amyA Carbon Cycling Carbon degradation Starch Halanaerobium praevalens DSM 2228 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halanaerobium;species:Halanaerobium praevalens; 4081.83 5639.1031 73534098 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 7179.9534 290649.7373 4008.9282 90325558 amyA Carbon Cycling Carbon degradation Starch Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4348.9525 326435862 hsp90_Choanoflagellida Other Phylogenetic NA Salpingoeca sp. ATCC 50818 superkingdom:Eukaryota;order:Choanoflagellida;family:Salpingoecidae;genus:Salpingoeca; 9103.3594 4040.3273 7920.6403 325986020 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 36577.3207 333813764 pcpb Organic Remediation Herbicides related compound NA Sinorhizobium meliloti BL225C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium meliloti; 5813.3624 30138948 gdh Nitrogen Ammonification NA Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 5354.1466 476042 catechol_b Organic Remediation Aromatics Other aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 5544.5663 374082593 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 10287.8944 6958.7659 4730.1954 326209150 B_lactamase_A Virulence Antibiotic resistance Degradation Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 251960.4526 2511554 GAPDH_Parabasalia Other Phylogenetic NA Tritrichomonas foetus superkingdom:Eukaryota;order:Tritrichomonadida;family:Tritrichomonadidae;genus:Tritrichomonas; 11569.314 2093.1581 1354284 dxna Organic Remediation Aromatics Heterocyclic aromatics superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 5258.7453 197285963 tehb Metal Homeostasis Tellurium Detoxification Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 4639.5919 163855703 bend Organic Remediation Aromatics Aromatic carboxylic acid Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 5710.1675 2099.7296 398093423 phn Organic Remediation Herbicides related compound NA Pantoea sp. GM01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 7892.4902 340616054 amyA Carbon Cycling Carbon degradation Starch Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 14282.5067 145589271 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 4761.7852 2686.4216 350270160 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 5343.6988 384055921 tktA Carbon Cycling Carbon fixation Calvin cycle Acetobacter pasteurianus IFO 3283-22 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pasteurianus; 12152.8954 10799.6269 152054 nhh Organic Remediation Aromatics Nitoaromatics superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 8469.1907 359342500 SoxC Sulfur Sulfur Oxidation NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 8950.2102 2459.6034 7258.7034 219869690 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio desulfuricans; 87136.6582 40669 endoglucanase Carbon Cycling Carbon degradation Cellulose Clostridium thermocellum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 6047.5148 256419953 b_lactamase Virulence Antibiotic resistance Degradation Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 5006.4794 357018965 ppx Phosphorus Polyphosphate degradation NA Mycobacterium thermoresistibile ATCC 19527 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium thermoresistibile; 9401.7689 156857673 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 45880.3443 3026.5496 4568.2031 148843240 RgaE Carbon Cycling Carbon degradation Pectin Planctomyces maris DSM 8797 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces maris; 5486.7416 88808516 FBPase Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 16426.0862 2171.7562 182678302 inulinase Carbon Cycling Carbon degradation Inulin Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 11759.4733 109290252 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9089.9172 345869869 cellobiase Carbon Cycling Carbon degradation Cellulose Thiorhodococcus drewsii AZ1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodococcus;species:Thiorhodococcus drewsii; 12017.5957 2747.3364 16059.1951 2679.2042 85693769 arsc Metal Homeostasis Arsenic Detoxification Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 242671.1411 301114731 hsp90_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 8673.7695 4266.688 4787.7552 4346.6842 90196661 phn Organic Remediation Herbicides related compound NA Mycobacterium vanbaalenii PYR-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii; 13157.3696 6319.612 12363.4462 186469051 phytase Phosphorus Phytic acid hydrolysis NA Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 5693.0364 332142846 cysJ Sulfur Reduction NA Alteromonas macleodii str. 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 8184.3055 1143162 cox1_Viridiplantae Other Phylogenetic NA Polytomella sp. Pringsheim 198.80 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Polytomella; 5491.0339 87312235 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 10678.1564 5349.5878 145258456 amyA Carbon Cycling Carbon degradation Starch Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 4287.1364 3337.2209 345102974 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle uncultured bacterium superkingdom:Bacteria; 5220.1461 115492149 lactase_fungi Carbon Cycling Carbon degradation Lactose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6061.5413 12667662 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium UMTRAdsr610-13 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 8117.2513 336305587 chitinase Carbon Cycling Carbon degradation Chitin Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 5067.1883 7256.519 319901252 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 9250.8073 76781065 nifh Nitrogen Nitrogen fixation NA Microbacterium sp. Zapt11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 6151.5869 350533135 chitinase Carbon Cycling Carbon degradation Chitin Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 4502.8574 3059202 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 36185.5923 320030250 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Serratia symbiotica str. Tucson superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia symbiotica; 4031.4123 4734.2644 2377.8674 299151803 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6385.5477 153892922 cellobiase Carbon Cycling Carbon degradation Cellulose Opitutaceae bacterium TAV2 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 39955.2815 3073.2365 339503222 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 44383.2422 6054.3821 256420959 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 5511.9313 154148861 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 4292.7582 297561764 amyA Carbon Cycling Carbon degradation Starch Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 5655.6407 5653.7329 4416.0834 5995.4816 379990337 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 5979.3782 394761610 terc Metal Homeostasis Tellurium Detoxification Actinomyces massiliensis F0489 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces massiliensis; 4480.2534 335341302 arsc Metal Homeostasis Arsenic Detoxification Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 39981.0453 422314505 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5862.4808 119947603 terc Metal Homeostasis Tellurium Detoxification Arthrobacter aurescens TC1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter aurescens; 4438.8447 402301521 nfsa_2 Organic Remediation Aromatics Nitoaromatics Bacillus alcalophilus ATCC 27647 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus alcalophilus; 4118.9151 88706355 tktA Carbon Cycling Carbon fixation Calvin cycle Congregibacter litoralis KT71 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Congregibacter;species:Congregibacter litoralis; 3661.1235 319892788 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Staphylococcus pseudintermedius HKU10-03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pseudintermedius; 5996.7151 74136894 bphc Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas;species:Polaromonas naphthalenivorans; 5600.5779 288553493 amyA Carbon Cycling Carbon degradation Starch Bacillus pseudofirmus OF4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pseudofirmus; 5686.322 361054800 PRK Carbon Cycling Carbon fixation Calvin cycle Sulfobacillus acidophilus DSM 10332 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XVII. Incertae Sedis;genus:Sulfobacillus;species:Sulfobacillus acidophilus; 4529.9986 15689.2974 83638360 cmtab Organic Remediation Aromatics Other aromatics Rhodococcus sp. T104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 3841.2212 2062.8589 363538988 terc Metal Homeostasis Tellurium Detoxification Legionella drancourtii LLAP12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii; 66543.7743 261880316 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 14544.3364 28080.3289 1882.0452 190687091 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 6372.7814 5014.4384 2149.3805 2921.7105 5585.0565 317018505 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4180.5407 4756.8387 386405067 amyA Carbon Cycling Carbon degradation Starch planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 3922.7775 375007472 amyA Carbon Cycling Carbon degradation Starch Geobacillus thermoleovorans CCB_US3_UF5 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermoleovorans; 4778.4261 5001.2314 52631734 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4944.43 2753.5873 289182073 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermocrinis albus DSM 14484 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Thermocrinis;species:Thermocrinis albus; 6625.7496 291541755 bphF1 Organic Remediation Aromatics Polycyclic aromatics Ruminococcus bromii L2-63 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus bromii; 5576.1781 374413676 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4048.213 359836553 endoglucanase Carbon Cycling Carbon degradation Cellulose Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 4553.936 165419.0281 3166.3759 2605.1712 154175242 ppx Phosphorus Polyphosphate degradation NA Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 4796.8715 33320442 dsrB Sulfur sulfite reduction NA Archaeoglobus veneficus superkingdom:Archaea;phylum:Euryarchaeota;class:Archaeoglobi;order:Archaeoglobales;family:Archaeoglobaceae;genus:Archaeoglobus; 8264.7327 2622.343 89241994 rubisco Carbon Cycling Carbon fixation Calvin cycle Pseudanabaena sp. PCC 7403 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Pseudanabaena; 3754.1121 126629953 bend Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 4804.6203 357047279 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 5576.8236 270210878 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 4380.7682 88643481 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4868.8215 306979006 soxY Sulfur Sulfur Oxidation NA Sulfurimonas autotrophica DSM 16294 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas autotrophica; 4271.4662 94983091 silicon_transporter Metal Homeostasis Silicon Transport NA 7920.0489 373124901 amyA Carbon Cycling Carbon degradation Starch Erysipelotrichaceae bacterium 21_3 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae; 5092.0458 5248.0174 7651.633 1778.0313 4410.8369 2191.7269 262373125 FBPase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 5712.0553 2526.0114 4798.2246 110823972 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 17222.3805 121595006 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Acidovorax sp. JS42 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 75921.1418 4442.5996 290745594 nosz Nitrogen Denitrification NA Afipia sp. 4LS4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 90285.2486 2183.956 398871307 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM74 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4542.0753 5016.887 328841482 proO Organic Remediation Aromatics Other aromatics Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 15742.9702 9193.0252 341926021 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 4485.5686 142511 amyA Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4939.3014 284927781 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 5106.5561 237846179 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4619.8698 156446887 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6434.9651 1779.3012 379989111 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3895.7164 109702473 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 10882.1715 17101.368 4205.6947 317394002 terc Metal Homeostasis Tellurium Detoxification Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4615.1255 34558214 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Wolinella succinogenes DSM 1740 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Wolinella;species:Wolinella succinogenes; 3943.7281 148975464 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 4115.1327 86553861 urec Nitrogen Ammonification NA Synechococcus sp. JA-3-3Ab superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4235.5964 4753.7069 189353218 B_lactamase_A Virulence Antibiotic resistance Degradation Burkholderia multivorans ATCC 17616 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 9104.0097 2791.2635 5898.4915 9621.2379 300771044 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Sphingobacterium spiritivorum ATCC 33861 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; 6517.8982 28971625 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 789475.3272 4795.7305 4028.1721 381181249 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 8207.5212 357560156 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella stercorea DSM 18206 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella stercorea; 6472.2102 5956.1191 219679356 arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium NOR51-B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4305.1309 2586.865 3325.0388 5330.1582 2221.5909 3927.6824 261253585 nosz Nitrogen Denitrification NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 4853.6319 139003155 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 4894.2273 28779466 EF1a_Oxymonads Other Phylogenetic NA Streblomastix strix superkingdom:Eukaryota;order:Oxymonadida;family:Streblomastigidae;genus:Streblomastix; 4742.9247 2612.4467 4842.6426 282897289 TIM Carbon Cycling Carbon fixation Calvin cycle Raphidiopsis brookii D9 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Raphidiopsis;species:Raphidiopsis brookii; 3684.6901 2920.8051 4128.661 154148764 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter hominis ATCC BAA-381 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter hominis; 4126.6739 7628.3446 171276681 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium dentium ATCC 27678 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium dentium; 4561.2498 260439045 amyA Carbon Cycling Carbon degradation Starch Butyrivibrio crossotus DSM 2876 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Butyrivibrio;species:Butyrivibrio crossotus; 4371.0356 116013274 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4954.1359 242810854 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 4363.4503 4281.8268 392310570 arylest Organic Remediation Aromatics Other aromatics Pseudoalteromonas citrea NCIMB 1889 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas citrea; 24095.8961 119492714 pme_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 5157.5716 339500592 chitinase Carbon Cycling Carbon degradation Chitin Spirochaeta caldaria DSM 7334 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema caldaria; 15067.6683 37548704 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4354.3593 78195281 tehb Metal Homeostasis Tellurium Detoxification Geobacter metallireducens GS-15 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter metallireducens; 3801.831 5235.4137 4903.1799 2469.2774 3754.4506 375301361 nifh Nitrogen Nitrogen fixation NA Acetobacterium woodii DSM 1030 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium;species:Acetobacterium woodii; 5492.0049 344198809 amyA Carbon Cycling Carbon degradation Starch Acidithiobacillus ferrivorans SS3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrivorans; 4750.7176 126668689 mer Metal Homeostasis Mercury Detoxification Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 3663.2907 148474746 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 200520.5172 311740980 ppx Phosphorus Polyphosphate degradation NA Corynebacterium pseudogenitalium ATCC 33035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudogenitalium; 6230.5083 206889584 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulfovibrio yellowstonii DSM 11347 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Thermodesulfovibrio;species:Thermodesulfovibrio yellowstonii; 5404.2449 292670905 atza Organic Remediation Herbicides related compound NA Selenomonas noxia ATCC 43541 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas noxia; 4648.2912 34497352 chitinase Carbon Cycling Carbon degradation Chitin Chromobacterium violaceum ATCC 12472 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chromobacterium;species:Chromobacterium violaceum; 4016.2981 110550155 nifh Nitrogen Nitrogen fixation NA Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 14096.1339 332796713 amyA Carbon Cycling Carbon degradation Starch Acidianus hospitalis W1 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Acidianus;species:Acidianus hospitalis; 27608.7897 456016.3788 407255545 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax dieselolei B5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax dieselolei; 4086.3971 6009.9631 2559.059 260773281 amyA Carbon Cycling Carbon degradation Starch Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 3635.4765 85669608 SoxB Sulfur Sulfur Oxidation NA Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 5601.6039 87281227 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6516.5966 290570607 tehb Metal Homeostasis Tellurium Detoxification Stackebrandtia nassauensis DSM 44728 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Glycomycetaceae;genus:Stackebrandtia;species:Stackebrandtia nassauensis; 24429.9305 294502.8882 99037565 dmdA Sulfur DMSP degradation NA Ruegeria sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 4167.5951 218047574 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 5591.9015 305664233 amyA Carbon Cycling Carbon degradation Starch Ignisphaera aggregans DSM 17230 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Ignisphaera;species:Ignisphaera aggregans; 3874.421 308231059 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6980.1308 394718882 nfsa_2 Organic Remediation Aromatics Nitoaromatics Citrobacter sp. A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; 96769.5462 262316061 alkb Organic Remediation Other Hydrocarbons NA Acinetobacter johnsonii SH046 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter johnsonii; 4637.1941 94676694 cysJ Sulfur Reduction NA Baumannia cicadellinicola str. Hc (Homalodisca coagulata) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Baumannia cicadellinicola; 15758.0757 56236522 endopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 4460.8401 3918.9733 328923265 pme Carbon Cycling Carbon degradation Pectin gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3855.314 359270426 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Synechocystis sp. PCC 6803 substr. GT-I superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis;species:Synechocystis sp. PCC 6803; 5206.7951 206895580 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Coprothermobacter proteolyticus DSM 5265 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermodesulfobiaceae;genus:Coprothermobacter;species:Coprothermobacter proteolyticus; 3973.6699 94983121 silicon_transporter Metal Homeostasis Silicon Transport NA 20646.2798 2163.8812 1689.574 4256.4982 13532.8534 87281020 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4112.5709 3803.8602 2319.3126 356690559 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15874.878 341820623 xyla Carbon Cycling Carbon degradation Hemicellulose Weissella thailandensis fsh4-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella thailandensis; 17548.4208 299075952 aoxb Metal Homeostasis Arsenic Detoxification Ralstonia solanacearum PSI07 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia solanacearum; 4135.8553 343927385 cutinase Carbon Cycling Carbon degradation Cutin Gordonia alkanivorans NBRC 16433 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia alkanivorans; 68544.0811 2607.0891 4015.3506 4962.0557 2248.7003 52548642 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon GZfos18B6 superkingdom:Archaea; 10206.9925 315498126 terc Metal Homeostasis Tellurium Detoxification Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 162877.0122 68556093 nosz Nitrogen Denitrification NA Ralstonia metallidurans CH34 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus metallidurans; 5256.1827 157404605 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 25413.4386 1874.2532 288335046 amyA Carbon Cycling Carbon degradation Starch Prevotella melaninogenica D18 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 16283.7987 109290249 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10605.8474 2397.0081 378763866 tktA Carbon Cycling Carbon fixation Calvin cycle Sinorhizobium fredii HH103 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii; 462378.398 241518273 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. trifolii WSM1325 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4577.6017 302416301 mannanase Carbon Cycling Carbon degradation Hemicellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 5153.4522 331025179 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 12859.5753 363421137 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 4857.062 407256560 bphc Organic Remediation Aromatics Polycyclic aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 8946.4414 324322776 cda Carbon Cycling Carbon degradation Starch Cellulophaga lytica DSM 7489 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Cellulophaga;species:Cellulophaga lytica; 66640.7646 99082959 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4314.7227 9271.0732 8415.9353 3018.0834 227484023 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4730.4571 49612406 nifh Nitrogen Nitrogen fixation NA Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 4457.4339 84666865 phn Organic Remediation Herbicides related compound NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 4982.2897 403189442 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens DSM 6976 = NBRC 102413 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 4608.1931 62906754 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4468.4507 4540.6338 62437.1157 284172547 RgaE Carbon Cycling Carbon degradation Pectin Haloterrigena turkmenica DSM 5511 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloterrigena;species:Haloterrigena turkmenica; 4320.9127 2162.3883 160879768 tehb Metal Homeostasis Tellurium Detoxification Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4041.4398 385867074 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 163917.8749 385262576 amyA Carbon Cycling Carbon degradation Starch Streptococcus sp. SK643 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 3953.0606 284008919 b_lactamase Virulence Antibiotic resistance Degradation Arsenophonus nasoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Arsenophonus; 4079.1501 338208836 tfth Organic Remediation Aromatics Chlorinated aromatics Acidiphilium sp. PM superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acidiphilium; 5252.7536 332881502 ara Carbon Cycling Carbon degradation Hemicellulose Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 4119.324 3087.3638 353182165 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium rhodesiae JS60 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5280.1738 115373281 mannanase Carbon Cycling Carbon degradation Hemicellulose Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 4116.1814 239801559 amyA Carbon Cycling Carbon degradation Starch Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 6616.7497 130750164 protease_serine_fungi Carbon Cycling Carbon degradation protein Paecilomyces lilacinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Ophiocordycipitaceae;genus:Purpureocillium; 11127.7229 6522.4733 6601.6027 76755.1568 302678893 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 4739.9633 390454691 amyA Carbon Cycling Carbon degradation Starch Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 9988.1039 89512890 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 15492.5168 88866370 dsrB Sulfur sulfite reduction NA bacterium AR1201 superkingdom:Bacteria; 4915.155 21632073 alpha_tubulin_ciliophora Other Phylogenetic NA Tokophrya lemnarum superkingdom:Eukaryota;class:Phyllopharyngea;order:Endogenida;family:Tokophryidae;genus:Tokophrya; 5185.6563 4253.2468 292644657 pula Carbon Cycling Carbon degradation Starch Turicibacter sanguinis PC909 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter;species:Turicibacter sanguinis; 2554989.2021 8616.0881 391418260 amyA Carbon Cycling Carbon degradation Starch Streptococcus canis FSL Z3-227 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus canis; 5725.6139 229326210 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus coagulans 36D1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus coagulans; 5973.4269 10416.7746 260617562 pgk Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 4259.0058 6319951 badh Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Saccharomyces; 5108.2754 3275.3309 237846110 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6659.3711 315486179 ppk Phosphorus Polyphosphate synthesis NA Eubacterium saburreum DSM 3986 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Lachnoanaerobaculum;species:Lachnoanaerobaculum saburreum; 5646.1866 217329944 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13585.8994 8632.7715 304413702 ppk Phosphorus Polyphosphate synthesis NA Candidatus Regiella insecticola LSR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Regiella;species:Candidatus Regiella insecticola; 15239.2562 206572834 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4408.4232 50982437 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 14654.79 21325172 catb Organic Remediation Aromatics BTEX and related aromatics Corynebacterium glutamicum ATCC 13032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 3899.0543 2536.1323 66876311 phdk Organic Remediation Polycyclic aromatics NA Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 12592.4606 359838067 amyA Carbon Cycling Carbon degradation Starch Actinoplanes sp. SE50/110 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Actinoplanes; 13692.0079 2537.0388 36723.5372 4349.501 1805.7889 5970.699 57232530 phenol_oxidase Carbon Cycling Carbon degradation Lignin Colletotrichum gloeosporioides superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Glomerellaceae;genus:Colletotrichum; 11804.4753 14199.5211 3219626 amyA Carbon Cycling Carbon degradation Starch Streptomyces lividans superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 15288.6175 5680.8308 82801439 alkb Organic Remediation Other Hydrocarbons NA bacterium alkW87 superkingdom:Bacteria; 3711.6561 349586276 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 8280.5711 187236228 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 6539.4882 339615214 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis ATCC 29667 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 4040.4406 144906122 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5295.497 319414049 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 9683.4451 341925987 chitinase Carbon Cycling Carbon degradation Chitin Chitiniphilus shinanonensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Chitiniphilus; 5155.4285 72122962 nagg Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis; 5177.6021 151561310 PRI Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum anthropi ATCC 49188 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum anthropi; 4219.9531 319414025 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 4545.2352 3329.1849 307095221 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 6019.575 21586607 nifh Nitrogen Nitrogen fixation NA uncultured prokaryote 6608.8528 3962.5436 27657632 chnc Organic Remediation Other Hydrocarbons NA Rhodococcus sp. Phi2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6335.6636 383816477 arsc Metal Homeostasis Arsenic Detoxification Serratia sp. M24T3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 4399.7163 124262285 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Methylibium petroleiphilum PM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Methylibium;species:Methylibium petroleiphilum; 4890.9521 254674400 cellobiase Carbon Cycling Carbon degradation Cellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 4651.0656 7518.1766 383315859 urec Nitrogen Ammonification NA Frateuria aurantia DSM 6220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Frateuria;species:Frateuria aurantia; 4657.7738 2410.8539 4753.581 391223171 xyla Carbon Cycling Carbon degradation Hemicellulose Opitutaceae bacterium TAV1 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;family:Opitutaceae; 5134.7451 71152687 silicon_transporter Metal Homeostasis Silicon Transport NA 4066.5473 313695267 RgaE Carbon Cycling Carbon degradation Pectin Bacteroides sp. D2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides; 3907.5886 5399.5523 23821234 merb Metal Homeostasis Mercury Detoxification Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3776.646 3443.9973 5247.588 315014472 phytase Phosphorus Phytic acid hydrolysis NA Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4120.1104 403188320 catechol Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens DSM 6976 = NBRC 102413 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 4883.5103 291561775 amyA Carbon Cycling Carbon degradation Starch butyrate-producing bacterium SS3/4 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales; 3881.8472 336429649 ara Carbon Cycling Carbon degradation Hemicellulose Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 6702.0147 2389.1516 49036602 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5080.5534 2116.2418 339328393 aln Organic Remediation Others NA Cupriavidus necator N-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator; 5802.5332 297626108 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 5592.4114 297556223 xyla Carbon Cycling Carbon degradation Hemicellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 7791.7078 359821551 amyA Carbon Cycling Carbon degradation Starch Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 17125.7021 12791.6585 2235.2286 342824959 chitinase Carbon Cycling Carbon degradation Chitin Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 4058.7788 154285838 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 19769.4257 34961.1945 3068.0433 154252232 chnb Organic Remediation Other Hydrocarbons NA Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 7519.3718 220977426 actin_Stramenopiles Other Phylogenetic NA Thalassiosira pseudonana CCMP1335 superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira;species:Thalassiosira pseudonana; 11425.5879 116235161 nosz Nitrogen Denitrification NA Aquitalea sp. PGP-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Aquitalea; 4235.9404 18877.6735 50542694 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4960.0401 5761.2324 388540117 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. AV2-9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 10379.9794 3991.9802 1665.8662 2861.0741 2592.4205 116634769 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14662.511 3406.0669 125498964 pula Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK36 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 4014.2392 106895848 ppx Phosphorus Polyphosphate degradation NA Clostridium sp. OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 4207.0813 5565.509 350270157 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 4834.6112 6502.0082 145241524 ara Carbon Cycling Carbon degradation Hemicellulose Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 45288.1742 296416633 amyA Carbon Cycling Carbon degradation Starch Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 4605.1524 2721.1867 4922.3961 219664373 nahc_2 Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. TFB superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 4076.7657 66801943 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 5032.8875 2565.937 422314045 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6158.8952 3948.286 126008915 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Ferroplasma acidarmanus fer1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermoplasmata;order:Thermoplasmatales;family:Ferroplasmaceae;genus:Ferroplasma;species:Ferroplasma acidarmanus; 4319.3145 2414.7405 229582426 dehh109 Organic Remediation Chlorinated solvents NA Sulfolobus islandicus Y.N.15.51 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus islandicus; 5936.6966 148474748 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3694.1944 221735635 TIM Carbon Cycling Carbon fixation Calvin cycle Agrobacterium vitis S4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium vitis; 6996.4924 3066.4015 32895024 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7565.4523 6984.8542 86450284 cox1_Viridiplantae Other Phylogenetic NA Oltmannsiellopsis viridis superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;genus:Oltmannsiellopsis; 10162.3002 56908658 endochitinase Carbon Cycling Carbon degradation Chitin Bacillus clausii KSM-K16 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus clausii; 4764.2513 7574.8161 86159424 amyA Carbon Cycling Carbon degradation Starch Anaeromyxobacter dehalogenans 2CP-C superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Anaeromyxobacter;species:Anaeromyxobacter dehalogenans; 5471.9169 224365207 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 11703.8584 157285395 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 12682.2255 10957.4998 153826368 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio cholerae MZO-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 18799.3384 257197546 amyA Carbon Cycling Carbon degradation Starch Faecalibacterium prausnitzii A2-165 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 5252.6645 133739472 cysI Sulfur Other NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 12216.9374 4245.0122 255070859 nitrite_reductase_protist Nitrogen Assimilation NA Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 9483.8995 110669456 chitinase Carbon Cycling Carbon degradation Chitin Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 4187.8338 2850.8684 33240008 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Prochlorococcus marinus subsp. marinus str. CCMP1375 superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorococcaceae;genus:Prochlorococcus;species:Prochlorococcus marinus; 8188.6447 338742393 amyA Carbon Cycling Carbon degradation Starch Streptococcus salivarius CCHSS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus salivarius; 5284.5567 12498.1977 255303506 FBPase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 12606.874 2408.3181 82527175 silicon_transporter Metal Homeostasis Silicon Transport NA 10364.6204 384072959 ppx Phosphorus Polyphosphate degradation NA Halobacillus halophilus DSM 2266 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Halobacillus;species:Halobacillus halophilus; 4237.1385 221320647 amyA Carbon Cycling Carbon degradation Starch Bacillus subtilis subsp. subtilis str. JH642 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus subtilis; 5132.3009 66946.1719 78168472 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. CC9902 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 61080.531 222087236 arsc Metal Homeostasis Arsenic Detoxification Agrobacterium radiobacter K84 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 5523.6739 5889.9558 67934550 rubisco Carbon Cycling Carbon fixation Calvin cycle Chlorobium phaeobacteroides DSM 266 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeobacteroides; 5183.6708 351731266 TIM Carbon Cycling Carbon fixation Calvin cycle Acidovorax radicis N35 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax;species:Acidovorax radicis; 14566.1354 3280.474 3784.4838 8824.2656 17199.1694 37605066 phytase Phosphorus Phytic acid hydrolysis NA Penicillium sp. superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 15854.5967 4913.1442 329957632 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 4189.508 289596759 rubisco Carbon Cycling Carbon fixation Calvin cycle Aciduliprofundum boonei T469 superkingdom:Archaea;phylum:Euryarchaeota;genus:Aciduliprofundum;species:Aciduliprofundum boonei; 10547.9531 27367177 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 4650.1402 312110872 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Geobacillus sp. Y4.1MC1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 899445.9682 3224.4564 169793524 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4011.8353 110932020 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 11136.0106 27657345 catechol Organic Remediation Aromatics Other aromatics Defluvibacter lusatiensis superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Aquamicrobium; 10204.628 194347604 amyA Carbon Cycling Carbon degradation Starch Stenotrophomonas maltophilia R551-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Stenotrophomonas;species:Stenotrophomonas maltophilia; 4312.7608 4760367 ppx Phosphorus Polyphosphate degradation NA Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5528.7346 384572876 cysJ Sulfur Reduction NA Vibrio tubiashii NCIMB 1337 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 8003.2695 78363473 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Thiomicrospira crunogena XCL-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thiomicrospira;species:Thiomicrospira crunogena; 9784.0815 1806.4502 4146.9431 237748208 B_lactamase_A Virulence Antibiotic resistance Degradation Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8457.6197 27372311 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 4013.1089 11127691 amyA Carbon Cycling Carbon degradation Starch Pseudomonas fluorescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 23224.7317 78102263 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 13877.9666 149209201 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Magnaporthe grisea 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 6284.1449 4721.5232 165976864 napa Nitrogen Dissimilatory N reduction NA Actinobacillus pleuropneumoniae serovar 3 str. JL03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus pleuropneumoniae; 11561.0231 302890786 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 5952.1498 2110.4562 1641.6616 86558028 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 33151.4425 5980.573 5270.8075 343178846 amyA Carbon Cycling Carbon degradation Starch Caloramator australicus RC3 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Caloramator;species:Caloramator australicus; 3747.0942 2733.2758 73749279 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 5578.9401 145322177 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Novosphingobium aromaticivorans DSM 12444 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium aromaticivorans; 10396.5248 24731.1892 44920698 atza Organic Remediation Herbicides related compound NA Methanococcus maripaludis S2 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanococcaceae;genus:Methanococcus;species:Methanococcus maripaludis; 4494.6295 294992291 endochitinase Carbon Cycling Carbon degradation Chitin Hypocrea rufa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 103448.2739 3715.8671 218564218 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 4386.5702 422314035 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3844.3595 306981570 pgk Carbon Cycling Carbon fixation Calvin cycle Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4445.2005 332377366 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 4079.9725 2830.1083 341615954 arsc Metal Homeostasis Arsenic Detoxification Citromicrobium sp. JLT1363 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Citromicrobium; 13516.5515 8386.873 332298186 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Treponema brennaborense DSM 12168 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema brennaborense; 3943.2245 169768195 Dyp Organic Remediation halogenated compounds NA Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 6732.5825 227497116 xyla Carbon Cycling Carbon degradation Hemicellulose Actinomyces urogenitalis DSM 15434 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces urogenitalis; 7636.7853 20536.0808 4678.9167 168991443 tehb Metal Homeostasis Tellurium Detoxification Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 4166.2631 206601959 amyA Carbon Cycling Carbon degradation Starch Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 4350.9822 164510323 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 168087.7749 322433068 amyA Carbon Cycling Carbon degradation Starch Granulicella tundricola MP5ACTX9 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella;species:Granulicella tundricola; 7459.8572 4863.1233 257313894 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 257683.5897 381338094 bphF1 Organic Remediation Aromatics Polycyclic aromatics Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 4589.1063 110632078 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4268.2362 2023.0504 225568840 amyA Carbon Cycling Carbon degradation Starch Clostridium hylemonae DSM 15053 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae; 5909.9321 4684.3344 364005261 urec Nitrogen Ammonification NA Streptomyces sp. W007 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 9936.0974 53862.1796 45839 nirs Nitrogen Denitrification NA Pseudomonas stutzeri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 6046.7266 390951193 terc Metal Homeostasis Tellurium Detoxification Thiocystis violascens DSM 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 24577.2133 374374258 RgaE Carbon Cycling Carbon degradation Pectin Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 569138.8021 298592930 arsc Metal Homeostasis Arsenic Detoxification Afipia sp. 1NLS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Afipia; 5010.7104 156104520 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 26990.2894 365815643 terc Metal Homeostasis Tellurium Detoxification Patulibacter sp. I11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Patulibacteraceae;genus:Patulibacter; 4382.5901 5486.672 5784.4188 315484617 amyA Carbon Cycling Carbon degradation Starch Enterococcus italicus DSM 15952 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus italicus; 12927.8695 109452519 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6058.1884 160881736 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 4329.5727 2653.9972 284447551 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 7940.4695 184199365 nirk Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 10439.9273 332013589 nirb Nitrogen Assimilatory N reduction NA Sphingomonas sp. S17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 583132.5081 83404788 nirs Nitrogen Denitrification NA uncultured organism 4038.5795 154183510 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 28391.2706 381204835 tfda Organic Remediation Aromatics Chlorinated aromatics SAR324 cluster bacterium JCVI-SC AAA005 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 6857.6892 8222.7722 352962470 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 4533.029 407715762 one_ring_12diox Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 4700.136 5558.1386 356609549 cutinase Carbon Cycling Carbon degradation Cutin Rhodococcus fascians D188 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus fascians; 5315.0163 159041501 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 6866.7738 319408342 TIM Carbon Cycling Carbon fixation Calvin cycle Bartonella schoenbuchensis R1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bartonellaceae;genus:Bartonella;species:Bartonella schoenbuchensis; 4029.5596 375088570 amyA Carbon Cycling Carbon degradation Starch Dolosigranulum pigrum ATCC 51524 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Dolosigranulum;species:Dolosigranulum pigrum; 4297.375 51872781 chitinase Carbon Cycling Carbon degradation Chitin uncultured organism 5741.4561 77974342 amyA Carbon Cycling Carbon degradation Starch Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 19781.779 7544050 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces coelicolor A3(2) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicolor; 3889.4371 29466030 norb Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4642.4168 109452396 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 10593.082 228270440 cysJ Sulfur Reduction NA Staphylococcus hominis SK119 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus hominis; 5493.5805 338172450 cysJ Sulfur Reduction NA Candidatus Moranella endobia PCIT superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Candidatus Moranella;species:Candidatus Moranella endobia; 6203.1413 326635606 phytase Phosphorus Phytic acid hydrolysis NA Rheinheimera sp. HJB12 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9765.2153 333980686 nifh Nitrogen Nitrogen fixation NA Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 13621.0133 209401722 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2401.5615 23250.4269 4252.4884 407287972 dehh109 Organic Remediation Chlorinated solvents NA Thalassospira xiamenensis M-5 = DSM 17429 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Thalassospira;species:Thalassospira xiamenensis; 2972.9931 375081605 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3037.1562 320103053 xyla Carbon Cycling Carbon degradation Hemicellulose Isosphaera pallida ATCC 43644 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Isosphaera;species:Isosphaera pallida; 2518.1162 219965709 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3019.5921 2550.5316 11528.8281 2668.5308 9379.9374 325988054 xylanase Carbon Cycling Carbon degradation Hemicellulose Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 3105.4091 3110.8434 148848930 amyA Carbon Cycling Carbon degradation Starch Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9994.1463 31514.4336 310784169 amyA Carbon Cycling Carbon degradation Starch Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 2800.2382 3174.3674 154692592 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Sclerotinia sclerotiorum 1980 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Sclerotinia;species:Sclerotinia sclerotiorum; 2409.9308 194294267 amyA Carbon Cycling Carbon degradation Starch Pseudoalteromonas sp. MY-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4531.7253 323528665 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2219.2294 84181178 ppx Phosphorus Polyphosphate degradation NA Serratia marcescens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 6103.5893 334881298 amyA Carbon Cycling Carbon degradation Starch Lactobacillus pentosus MP-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus pentosus; 4070.9313 319794258 PRK Carbon Cycling Carbon fixation Calvin cycle Variovorax paradoxus EPS superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; 13413.7135 293329151 nitrilase Organic Remediation Aromatics Other aromatics Shewanella violacea DSS12 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella violacea; 6721.6814 315304240 cda Carbon Cycling Carbon degradation Starch Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 3393.123 253580745 nitrilase Organic Remediation Aromatics Other aromatics Ruminococcus sp. 5_1_39B_FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus; 2948.6797 16589040 B_lactamase_A Virulence Antibiotic resistance Degradation Escherichia hermannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 11538.3511 55540858 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 190166.4032 31975.1073 149911477 nrfa Nitrogen Dissimilatory N reduction NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 3405.8273 10140.3428 86148204 Sir Sulfur sulfite reduction NA Vibrio sp. MED222 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2419.0988 84953.3388 170116467 glx Carbon Cycling Carbon degradation Lignin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 2795.9971 349586212 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2340.8402 9139.6913 387887805 terc Metal Homeostasis Tellurium Detoxification Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 2647.6474 212538837 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces marneffei; 3748.7023 302405457 exoglucanase Carbon Cycling Carbon degradation Cellulose Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 3161.0344 158522568 alkk Organic Remediation Others NA Desulfococcus oleovorans Hxd3 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfococcus;species:Desulfococcus oleovorans; 2447.8817 227084748 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus buchneri ATCC 11577 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 5949.1243 2003.7232 336069107 ara Carbon Cycling Carbon degradation Hemicellulose Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 2509.81 6879.0246 118424317 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8791.1655 158138903 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2295.7865 2711.4919 38179.2292 254970196 FBPase Carbon Cycling Carbon fixation Calvin cycle Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 9079.6151 1742.9474 223886553 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 2668.6593 146188542 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9783.1607 39053.5952 390569049 proO Organic Remediation Aromatics Other aromatics Burkholderia terrae BS001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia terrae; 2560.5126 2927.9195 118602358 arsc Metal Homeostasis Arsenic Detoxification Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 4112.7556 400534724 linb Organic Remediation Pesticides related compound NA Mycobacterium colombiense CECT 3035 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium colombiense; 30983.1167 38741.7676 377577325 cysI Sulfur Other NA Escherichia hermannii NBRC 105704 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia hermannii; 2769.683 1785559 dsra Sulfur sulfite reduction NA Desulfovibrio gigas superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio; 2239.0669 71383764 narb Nitrogen Assimilatory N reduction NA Oscillatoria sancta PCC 7515 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Oscillatoria;species:Oscillatoria sancta; 6501.7869 150274800 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides capillosus ATCC 29799 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;genus:Pseudoflavonifractor;species:Pseudoflavonifractor capillosus; 2481.8749 2550.2007 6190.2516 313639023 arsc Metal Homeostasis Arsenic Detoxification Listeria seeligeri FSL S4-171 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria seeligeri; 15512.7849 12001908 nifh Nitrogen Nitrogen fixation NA uncultured bacterium NR1638 superkingdom:Bacteria; 23063.7213 317395033 chitinase Carbon Cycling Carbon degradation Chitin Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3594.6214 145589445 PRI Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 15912.9928 78102085 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 3447.9901 357426639 nagg Organic Remediation Aromatics Aromatic carboxylic acid Azospirillum lipoferum 4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum;species:Azospirillum lipoferum; 6967.6866 225046660 cellobiase Carbon Cycling Carbon degradation Cellulose Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 2691.2313 161986637 mer Metal Homeostasis Mercury Detoxification Salinibacter ruber DSM 13855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Salinibacter;species:Salinibacter ruber; 4936.9072 48527128 mcra Carbon Cycling Methane Methanogenesis uncultured Methanomicrobiales archaeon superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanomicrobiales; 3239.7226 5359.8296 302132912 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas syringae pv. tomato NCPPB 1108 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 2719.4385 27227705 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella bryantii superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella; 4993.749 390455912 amyA Carbon Cycling Carbon degradation Starch Paenibacillus peoriae KCTC 3763 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus peoriae; 5204.3128 255693089 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 14908.3344 148474756 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7390.3249 12495.3099 2996.995 2744.187 4530.0265 406718225 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 2796.8958 260592838 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 4210.777 209518281 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 6724.0623 9690.9993 4480.909 149129832 pme Carbon Cycling Carbon degradation Pectin Bacteroides caccae ATCC 43185 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides caccae; 3458.7924 1911.4732 338814951 cda Carbon Cycling Carbon degradation Starch Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 2250.6834 170027465 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 17076.9285 313627389 amyA Carbon Cycling Carbon degradation Starch Listeria ivanovii FSL F6-596 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria ivanovii; 3517.0167 390630061 amyA Carbon Cycling Carbon degradation Starch Weissella confusa LBAE C39-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella confusa; 15537.5855 2124.3339 5257.572 398053798 dehh109 Organic Remediation Chlorinated solvents NA Burkholderia sp. BT03 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 3755.5891 329760028 tfda Organic Remediation Aromatics Chlorinated aromatics Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 7079.7493 118424400 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2806.2077 1906.9452 75704630 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 14705.4212 257678777 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Pseudonocardia sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 20575.7088 90819624 aln Organic Remediation Others NA Acidovorax facilis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Acidovorax; 4655.9692 376372750 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7514.5156 317504888 amyA Carbon Cycling Carbon degradation Starch Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 18225.5521 147919136 atza Organic Remediation Herbicides related compound NA uncultured methanogenic archaeon RC-I superkingdom:Archaea;phylum:Euryarchaeota; 2556.1767 219667028 tehb Metal Homeostasis Tellurium Detoxification Desulfitobacterium hafniense DCB-2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium hafniense; 18230.451 157804714 APS_AprB Sulfur adenylylsulfate reductase NA Chlorobaculum thiosulfatiphilum superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum; 3361.4192 356600051 arxa Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3140.966 3090.7086 86143553 chna Organic Remediation Other Hydrocarbons NA Flavobacterium sp. MED217 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Leeuwenhoekiella;species:Leeuwenhoekiella blandensis; 80360.8082 343484583 atza Organic Remediation Herbicides related compound NA Candidatus Caldiarchaeum subterraneum superkingdom:Archaea;phylum:Thaumarchaeota;genus:Candidatus Caldiarchaeum; 3744.53845 315606797 nrfa Nitrogen Dissimilatory N reduction NA Prevotella buccae ATCC 33574 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccae; 3867.0101 256792056 amyA Carbon Cycling Carbon degradation Starch Slackia heliotrinireducens DSM 20476 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Slackia;species:Slackia heliotrinireducens; 7450.2767 289600319 phytase Phosphorus Phytic acid hydrolysis NA uncultured microorganism 7140.3007 146327852 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 4947.2431 15566.2046 118475262 ppk Phosphorus Polyphosphate synthesis NA Campylobacter fetus subsp. fetus 82-40 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter fetus; 2172.9477 332350238 terc Metal Homeostasis Tellurium Detoxification Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 2330.7803 88787799 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. WH 7805 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5913.1127 148980113 amyA Carbon Cycling Carbon degradation Starch Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 4680.656 1963.6654 31540489 endochitinase Carbon Cycling Carbon degradation Chitin uncultured Neotyphodium superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae; 12258.2325 5623.3567 8553.5401 294476190 PRK Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 4459.2474 5741.6275 161382541 phn Organic Remediation Herbicides related compound NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 5927.8375 298291035 exaa(moxf) Organic Remediation Chlorinated solvents NA Starkeya novella DSM 506 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Starkeya;species:Starkeya novella; 14091.6272 42475478 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2846.84 116293941 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2714.1524 238715148 arsc Metal Homeostasis Arsenic Detoxification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 2745.0583 220931537 amyA Carbon Cycling Carbon degradation Starch Halothermothrix orenii H 168 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halanaerobiaceae;genus:Halothermothrix;species:Halothermothrix orenii; 36297.9176 12159.2282 407279819 tfdb Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. P14 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 6430.4636 59892060 nifh Nitrogen Nitrogen fixation NA uncultured forest soil bacterium superkingdom:Bacteria; 3547.581 339491240 ppx Phosphorus Polyphosphate degradation NA Leuconostoc sp. C2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc; 6290.7287 21779990 actin_ciliophora Other Phylogenetic NA Uroleptus pisces superkingdom:Eukaryota;class:Spirotrichea;order:Urostylida;family:Urostylidae;genus:Uroleptus; 3866.31 373228643 amyA Carbon Cycling Carbon degradation Starch Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 2495.1649 4469.2628 1707.9508 294677367 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Rhodobacter capsulatus SB 1003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter capsulatus; 3391.1815 171463045 tktA Carbon Cycling Carbon fixation Calvin cycle Polynucleobacter necessarius subsp. necessarius STIR1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Polynucleobacter;species:Polynucleobacter necessarius; 2180.368 119377454 soxY Sulfur Sulfur Oxidation NA Paracoccus denitrificans PD1222 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus;species:Paracoccus denitrificans; 72515.3847 7101.0513 2856.3829 68164720 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 15123.8468 112441448 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2424.79 403652817 nbzb Organic Remediation Aromatics Nitoaromatics Mycobacterium vaccae ATCC 25954 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vaccae; 3792.4108 346991426 bphc Organic Remediation Aromatics Polycyclic aromatics Ruegeria sp. TW15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 5413.8971 330997911 xylanase Carbon Cycling Carbon degradation Hemicellulose Paraprevotella xylaniphila YIT 11841 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella xylaniphila; 2659.9315 193083869 cysJ Sulfur Reduction NA uncultured marine group II euryarchaeote KM3-85-F5 superkingdom:Archaea;phylum:Euryarchaeota; 44322.6406 3996.8344 258520125 nirk Nitrogen Denitrification NA Cardiobacterium hominis ATCC 15826 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Cardiobacteriales;family:Cardiobacteriaceae;genus:Cardiobacterium;species:Cardiobacterium hominis; 2618.15 307945198 cmci Organic Remediation Aromatics Other aromatics Roseibium sp. TrichSKD4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseibium; 2580.596 144401.6114 374386933 cda Carbon Cycling Carbon degradation Starch Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 6680.1134 10690.6138 293189354 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Actinomyces odontolyticus F0309 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; 2421.2583 2999.5434 5189.9822 119497755 pec_Cdeg Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 42788.698 290472307 alkk Organic Remediation Others NA Meiothermus ruber DSM 1279 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Meiothermus;species:Meiothermus ruber; 4578.2477 111919309 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 8648.104 77378479 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9519.1678 154281891 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ajellomyces capsulatus NAm1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces capsulatus; 26298.1116 374609935 amyA Carbon Cycling Carbon degradation Starch Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 5463.9456 2966.9833 372324615 cda Carbon Cycling Carbon degradation Starch Oenococcus kitaharae DSM 17330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus kitaharae; 82495.3735 337270299 poba Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium opportunistum WSM2075 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium opportunistum; 3982.4905 37222165 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 87298.0388 83944694 alkk Organic Remediation Others NA Oceanicaulis alexandrii HTCC2633 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Hyphomonadaceae;genus:Oceanicaulis; 3060.3489 342316544 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4458.1743 381179688 amyA Carbon Cycling Carbon degradation Starch Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 2304.6867 2537.0634 7129.7078 325554673 amyA Carbon Cycling Carbon degradation Starch Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 3529.7681 20405.1369 89242000 rubisco Carbon Cycling Carbon fixation Calvin cycle Tolypothrix sp. CCMP1185 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Microchaetaceae;genus:Tolypothrix; 4413.3683 11963.7121 154686985 ara Carbon Cycling Carbon degradation Hemicellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 5256.1846 295668282 phospholipase_B_fungi virulence degradation NA Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9649.4785 30250220 terc Metal Homeostasis Tellurium Detoxification Nitrosomonas europaea ATCC 19718 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas europaea; 2293.7345 75676918 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi Nb-255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter winogradskyi; 6522.942 15055585 dsrB Sulfur sulfite reduction NA Desulfobacter latus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacter; 5810.4712 2830.7547 1785.6283 4494.7093 71361375 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 9127.7353 224954063 ppk Phosphorus Polyphosphate synthesis NA Eubacterium hallii DSM 3353 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium hallii; 2722.0066 365875190 amyA Carbon Cycling Carbon degradation Starch Elizabethkingia anophelis Ag1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Elizabethkingia;species:Elizabethkingia anophelis; 22855.7287 146188521 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5863.894 170721788 tktA Carbon Cycling Carbon fixation Calvin cycle Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 2378.823 10485.8551 2351.5955 2550.2533 260621404 chitinase Carbon Cycling Carbon degradation Chitin Bacteroides finegoldii DSM 17565 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides finegoldii; 3421.8424 10929.8179 6028.0566 91801885 tktA Carbon Cycling Carbon fixation Calvin cycle Nitrobacter hamburgensis X14 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter;species:Nitrobacter hamburgensis; 3860.7752 190695181 endoglucanase Carbon Cycling Carbon degradation Cellulose Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 6771.0149 18746.1672 7905.6211 325182914 hsp90_Stramenopiles Other Phylogenetic NA Albugo laibachii Nc14 superkingdom:Eukaryota;order:Albuginales;family:Albuginaceae;genus:Albugo;species:Albugo laibachii; 3455.4274 319753598 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Desulfurococcus mucosus DSM 2162 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Desulfurococcaceae;genus:Desulfurococcus;species:Desulfurococcus mucosus; 3082.8232 366054201 ppx Phosphorus Polyphosphate degradation NA Lactobacillus suebicus KCTC 3549 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus suebicus; 4954.4537 13685.8969 315279696 amyA Carbon Cycling Carbon degradation Starch Paenibacillus vortex V453 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus vortex; 2767.3849 410658841 rd Organic Remediation Chlorinated solvents NA Dehalobacter sp. DCA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Dehalobacter; 3513.7311 90310396 arsc Metal Homeostasis Arsenic Detoxification Psychromonas sp. CNPT3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas; 2736.0652 154493947 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 3414.0659 268611682 endoglucanase Carbon Cycling Carbon degradation Cellulose Ruminococcus flavefaciens FD-1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus flavefaciens; 2265.4227 6668.8965 3613.5385 291544512 mannanase Carbon Cycling Carbon degradation Hemicellulose Ruminococcus champanellensis 18P13 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus champanellensis; 2269.1489 399013154 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5867.345 217504881 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylocella silvestris BL2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Methylocella;species:Methylocella silvestris; 37514.9745 317395627 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus sp. 2_A_57_CT2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 6426.5388 2127.8944 7329.7896 332353456 FBPase Carbon Cycling Carbon fixation Calvin cycle Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 2801.5056 8710.4986 5328.0509 3111.9681 3141.8478 5679.373 220914554 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 3491.417 3989.4664 407256190 arylest Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 2577.0888 9378.9874 91204153 hzo Nitrogen Anammox NA Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Kuenenia; 3029.2689 76058121 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13793.3277 238599237 RgaE Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 5520.5059 256828156 mer Metal Homeostasis Mercury Detoxification Desulfomicrobium baculatum DSM 4028 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium;species:Desulfomicrobium baculatum; 2985.5088 7120.2799 156869730 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 4227.9535 254412674 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 18391.5282 20368.146 390426273 amyA Carbon Cycling Carbon degradation Starch Thiocystis violascens DSM 198 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocystis;species:Thiocystis violascens; 3041.5724 224371295 dsrB Sulfur sulfite reduction NA Desulfobacterium autotrophicum HRM2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium;species:Desulfobacterium autotrophicum; 30809.7742 16675.6998 365854080 ppx Phosphorus Polyphosphate degradation NA Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 2104.5117 15787972 dsra Sulfur sulfite reduction NA Desulfobulbus sp. DSM 2058 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobulbaceae;genus:Desulfobulbus; 3886.2515 333823847 terc Metal Homeostasis Tellurium Detoxification Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 2290.7139 171683861 lactase_fungi Carbon Cycling Carbon degradation Lactose Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 43322.6348 385885521 amyA Carbon Cycling Carbon degradation Starch Micromonospora lupini str. Lupac 08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Micromonospora;species:Micromonospora lupini; 19867.2498 353343866 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rothia mucilaginosa M508 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Rothia;species:Rothia mucilaginosa; 6269.6462 374324204 amyA Carbon Cycling Carbon degradation Starch Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 51025.0856 20351.4172 371909451 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 25487.2766 12957.1713 150864452 chnb Organic Remediation Other Hydrocarbons NA Pichia stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 3056.4718 213013462 amyA Carbon Cycling Carbon degradation Starch Thermotogales bacterium TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 5836.3655 121495873 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 5955.1836 4817.5682 91700826 xylg Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 14996.1581 15878.4187 9373.138 312879989 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Aminomonas paucivorans DSM 12260 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Aminomonas;species:Aminomonas paucivorans; 2680.384 148974089 pula Carbon Cycling Carbon degradation Starch Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 3685.5503 332683397 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 5385.16 77378737 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3062.3329 2827.8715 392844010 limeh Carbon Cycling Carbon degradation Terpenes Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4021.4478 77378511 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 11248.983 115803.3838 17806.1587 312213427 axe Carbon Cycling Carbon degradation Cellulose Leptosphaeria maculans JN3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria;species:Leptosphaeria maculans; 40275.1493 30452.5451 373866283 soxY Sulfur Sulfur Oxidation NA Sulfurimonas gotlandica GD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Sulfurimonas;species:Sulfurimonas gotlandica; 5212.2149 6095.2561 99078285 cellobiase Carbon Cycling Carbon degradation Cellulose Silicibacter sp. TM1040 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 2439.1582 15840604 narg Nitrogen Denitrification NA Mycobacterium tuberculosis CDC1551 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tuberculosis; 9002.924 3637.3617 13719.7437 323365028 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 2886.6353 5126.9235 7951.6225 146303421 MCM_3HP4HB Carbon Cycling Carbon fixation 3-hydroxypropionate/4-hydroxybutyrate cycle Metallosphaera sedula DSM 5348 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Metallosphaera;species:Metallosphaera sedula; 3624.2491 50085048 nasa Nitrogen Assimilatory N reduction NA Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 13233.6491 7806.8892 3083.8254 60593158 dsrB Sulfur sulfite reduction NA uncultured prokaryote 2833.6353 5852.6266 5811.8192 1834.3377 4527.2135 5146.5758 407799007 nbac Organic Remediation Aromatics Nitoaromatics Oceaniovalibus guishaninsula JLT2003 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceaniovalibus;species:Oceaniovalibus guishaninsula; 2207.93 393773897 sdsa Organic Remediation Others NA Novosphingobium sp. Rr 2-17 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 3300.8967 6112.716 381337596 mer Metal Homeostasis Mercury Detoxification Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 2214.0003 2441.8118 10954.038 149606 xyla Carbon Cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus; 3253.4582 89097108 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3359.6719 378765687 pcag Organic Remediation Aromatics Other aromatics Pantoea ananatis LMG 5342 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 14134.3046 2984.3625 391875224 dehh109 Organic Remediation Chlorinated solvents NA Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 11160.4335 4590.2135 295894990 amyA Carbon Cycling Carbon degradation Starch Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 2257.4752 3564.5475 325288406 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Syntrophobotulus glycolicus DSM 8271 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Syntrophobotulus;species:Syntrophobotulus glycolicus; 3270.1791 334179919 fosb Virulence Antibiotic resistance Degradation Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 3139.5767 161015613 actin_Stramenopiles Other Phylogenetic NA Spumella-like flagellate Got220 superkingdom:Eukaryota;class:Chrysophyceae;order:Chromulinales;family:Chromulinaceae; 2585.1327 333049.2909 157846485 arylest Organic Remediation Aromatics Other aromatics Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 2596.0509 388537227 terc Metal Homeostasis Tellurium Detoxification Advenella kashmirensis WT001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Advenella;species:Advenella kashmirensis; 3358.768 260613681 cda Carbon Cycling Carbon degradation Starch Vibrio furnissii CIP 102972 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 46166.1689 2908.5527 270298262 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 4028.7256 339612536 nrfa Nitrogen Dissimilatory N reduction NA Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 2657.3598 2406.1171 3799.1809 12764.3871 29832141 cellobiase Carbon Cycling Carbon degradation Cellulose Streptomyces avermitilis MA-4680 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces avermitilis; 3368.0512 334892737 exaa(moxf) Organic Remediation Chlorinated solvents NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 11295.3304 169187451 badh Organic Remediation Aromatics Other aromatics Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3293.0031 397733501 oxdb Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. JVH1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 11921.6391 291070666 tehb Metal Homeostasis Tellurium Detoxification Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 2412.5703 154183531 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6061.934 1915.7817 2974.5179 111019652 badh Organic Remediation Aromatics Other aromatics Rhodococcus jostii RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 2350.7581 4167.209 212635535 arsc Metal Homeostasis Arsenic Detoxification Shewanella piezotolerans WP3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella piezotolerans; 2149.9436 356690969 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2934.3015 3765.8969 238764571 amyA Carbon Cycling Carbon degradation Starch Yersinia kristensenii ATCC 33638 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia kristensenii; 2205.9399 112462285 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9122.0541 17104.1092 410030786 nosz Nitrogen Denitrification NA Marinilabilia sp. AK2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Marinilabilia; 7718.3206 2329.4955 255084517 mg_chelatase Secondary metabolism Pigments Chlorophyll Micromonas sp. RCC299 superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Mamiellophyceae;order:Mamiellales;genus:Micromonas; 4857.1714 189207745 p450aro Organic Remediation Aromatics polycyclic aromatics Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 5276.8968 343402340 gdh Nitrogen Ammonification NA Actinomyces sp. oral taxon 175 str. F0384 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces sp. oral taxon 175; 2238.884 377520663 badh Organic Remediation Aromatics Other aromatics Gordonia otitidis NBRC 100426 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia otitidis; 13676.0395 85704151 arsc Metal Homeostasis Arsenic Detoxification Roseovarius sp. 217 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 2929.0661 70672991 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2813.3467 11823.6676 5998.434 2361.3324 2956.128 50871752 chitinase Carbon Cycling Carbon degradation Chitin Arthrobacter sp. TAD20 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 4741.9057 307596092 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 3396.4933 5900.283 5779.8816 8355.6263 3092.9127 291616864 nfsa_2 Organic Remediation Aromatics Nitoaromatics Pantoea ananatis LMG 20103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea ananatis; 2540.5059 1777.6526 116734405 nirk Nitrogen Denitrification NA Nitrosospira briensis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosospira; 2639.9238 307551635 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 8140.031 113628.6625 13325.7938 238500552 phenol_oxidase Carbon Cycling Carbon degradation Lignin Aspergillus flavus NRRL3357 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus flavus; 14797.6169 295110962 catb Organic Remediation Aromatics BTEX and related aromatics Synergistetes bacterium SGP1 superkingdom:Bacteria;phylum:Synergistetes; 4563.2746 10085.395 85089376 endochitinase Carbon Cycling Carbon degradation Chitin Neurospora crassa OR74A superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;species:Neurospora crassa; 15731.6317 86165871 atzb Organic Remediation Herbicides related compound NA Marinomonas sp. MED121 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Oceanospirillaceae;genus:Marinomonas; 2337.5362 297546493 amyA Carbon Cycling Carbon degradation Starch Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 3062.5244 374326071 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 2673.1983 164456138 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 36095.919 57506066 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter upsaliensis RM3195 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter upsaliensis; 5387.197 307151360 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3159.6697 16871.1412 321163171 ara Carbon Cycling Carbon degradation Hemicellulose Granulicella tundricola superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Granulicella; 3558.4876 59711997 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 6855.9245 365851563 amyA Carbon Cycling Carbon degradation Starch Lactobacillus parafarraginis F0439 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus parafarraginis; 3974.7496 108760724 terc Metal Homeostasis Tellurium Detoxification Myxococcus xanthus DK 1622 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Myxococcaceae;genus:Myxococcus;species:Myxococcus xanthus; 23823.7844 325568740 xylanase Carbon Cycling Carbon degradation Hemicellulose Enterococcus casseliflavus ATCC 12755 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 4097.8995 325063317 amyA Carbon Cycling Carbon degradation Starch Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 3859.9023 54025226 cutinase Carbon Cycling Carbon degradation Cutin Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 5447.8947 46307866 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2996.8311 2336.6867 2975.6468 13911.5267 291581678 vgb Virulence Antibiotic resistance Degradation Nitrosococcus halophilus Nc4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus halophilus; 2604.7766 12005497 protease_serine_fungi Carbon Cycling Carbon degradation protein Penicillium oxalicum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium; 2987.3797 5074.5933 374327358 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum sp. 1860 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum; 9724.4118 375011984 chitinase Carbon Cycling Carbon degradation Chitin Owenweeksia hongkongensis DSM 17368 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Cryomorphaceae;genus:Owenweeksia;species:Owenweeksia hongkongensis; 3535.6628 126737911 tktA Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 2903.4024 7008.4478 389575815 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium cellulosolvens 6 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium cellulosolvens; 2818.9439 1940.8484 310624957 pme Carbon Cycling Carbon degradation Pectin Faecalibacterium cf. prausnitzii KLE1255 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Faecalibacterium;species:Faecalibacterium prausnitzii; 2892.6407 110589380 mdh Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Endoriftia persephone 'Hot96_1+Hot96_2' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Endoriftia;species:Endoriftia persephone; 2180.0589 5826.0368 90441184 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Photobacterium angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 2482.5276 292815518 tfda Organic Remediation Aromatics Chlorinated aromatics Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 3891.6892 350563176 TIM Carbon Cycling Carbon fixation Calvin cycle Thioalkalimicrobium aerophilum AL3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium aerophilum; 2219.7495 85711354 phytase Phosphorus Phytic acid hydrolysis NA Idiomarina baltica OS145 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Idiomarinaceae;genus:Idiomarina;species:Idiomarina baltica; 3557.5142 2267.4068 90569650 norb Nitrogen Denitrification NA Pseudomonas aeruginosa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3358.6856 9861.8269 5037.231 9999.4413 5130.3817 328524677 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 5642.6428 4947.2959 294447319 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacteroides vulgatus PC510 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides vulgatus; 3060.2069 8208.0046 77378541 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4693.8906 119490572 tktA Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 7524.0099 335340953 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 3324.7162 319415147 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides helcogenes P 36-108 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides helcogenes; 6458.4436 307742870 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4441.9016 2472.8684 116252631 arsc Metal Homeostasis Arsenic Detoxification Rhizobium leguminosarum bv. viciae 3841 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3983.5061 3367.5703 83317016 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2676.303 7479.7259 2560.7792 4968.3954 2113.1239 119473113 protease_serine_fungi Carbon Cycling Carbon degradation protein Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 4256.9897 293329755 p450aro Organic Remediation Aromatics polycyclic aromatics Aspergillus oryzae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 12170.4482 6509.2672 55791762 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 5380.7177 2985.9741 1793.2432 2052.4395 328841992 RgaE Carbon Cycling Carbon degradation Pectin Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 7372.3404 13259.2189 4111.9754 3450.9254 336427023 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 5684.6567 1861.8155 150036050 soxY Sulfur Sulfur Oxidation NA Spirochaeta sp. M-6 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta; 9118.4329 4211.7331 310643472 pula Carbon Cycling Carbon degradation Starch Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 12909.1062 73294041 aclb Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Lebetimonas acidiphila superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Nautiliales;family:Nautiliaceae;genus:Lebetimonas; 360810.6608 6119631 alkb Organic Remediation Other Hydrocarbons NA Pseudomonas chlororaphis superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas chlororaphis; 56054.4924 241951616 ppx Phosphorus Polyphosphate degradation NA Candida dubliniensis CD36 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida dubliniensis; 151643.9837 334145017 bphF1 Organic Remediation Aromatics Polycyclic aromatics Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 7292.5752 223585912 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5977.0475 4303.157 55978101 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7984.1082 154309203 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 6643.3958 5353.1301 399909666 tfda Organic Remediation Aromatics Chlorinated aromatics Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 10709.4753 70672935 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6011.4266 2904.8719 119774080 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Shewanella amazonensis SB2B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella amazonensis; 5307.8502 385331125 arylest Organic Remediation Aromatics Other aromatics Marinobacter adhaerens HP15 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter adhaerens; 8184.023 220711726 ophc Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 6448.3444 4432.2306 281195015 Sir Sulfur sulfite reduction NA Cylindrospermopsis raciborskii CS-505 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Cylindrospermopsis;species:Cylindrospermopsis raciborskii; 5415.2688 118434925 pcpe Organic Remediation Herbicides related compound NA Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 7197.1866 25900760 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5807.8343 295895959 alkk Organic Remediation Others NA Mycobacterium parascrofulaceum ATCC BAA-614 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium parascrofulaceum; 6523.2464 315426396 mer Metal Homeostasis Mercury Detoxification Candidatus Caldiarchaeum subterraneum superkingdom:Archaea;phylum:Thaumarchaeota;genus:Candidatus Caldiarchaeum; 15357.2431 325297329 amyA Carbon Cycling Carbon degradation Starch Bacteroides salanitronis DSM 18170 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides salanitronis; 5081.6308 2302.6291 7458.3776 110824846 lmo Carbon Cycling Carbon degradation Terpenes Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 5249.6736 151355 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5232.1108 42220.5038 56785444 phenol_oxidase Carbon Cycling Carbon degradation Lignin Trametes sp. 420 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 5796.4408 3531.3008 72162290 amyA Carbon Cycling Carbon degradation Starch Thermobifida fusca YX superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Thermobifida;species:Thermobifida fusca; 5972.737 2295.4619 242772202 amyA Carbon Cycling Carbon degradation Starch Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 7720.167 331024278 cysJ Sulfur Reduction NA Pseudomonas syringae pv. oryzae str. 1_6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas coronafaciens; 4747.6582 13434.7222 363615098 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Subdoligranulum sp. 4_3_54A2FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 5661.5532 2815.5275 99083189 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 194192.2131 117583156 atzd Organic Remediation Herbicides related compound NA Arthrobacter sp. AD25 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 29459.3791 333734229 nifh Nitrogen Nitrogen fixation NA Treponema azotonutricium ZAS-9 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema azotonutricium; 26058.5661 4693.576 170084809 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 7734.4769 4639.4721 15093.3436 320594283 cpnb Organic Remediation Other Hydrocarbons NA Grosmannia clavigera kw1407 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Ophiostomatales;family:Ophiostomataceae;genus:Grosmannia;species:Grosmannia clavigera; 14334.5569 21611.6437 3950.2476 353210796 exaa(moxf) Organic Remediation Chlorinated solvents NA Hyphomicrobium denitrificans 1NES1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium;species:Hyphomicrobium denitrificans; 59362.1846 260635658 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 472 str. F0295 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 472; 6777.6243 6276.1145 363623239 chitinase Carbon Cycling Carbon degradation Chitin Subdoligranulum sp. 4_3_54A2FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum; 6912.552 220062015 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. JDC-11 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 7315.371 4177.8052 8581.7407 1592313 nifh Nitrogen Nitrogen fixation NA Methanocaldococcus jannaschii DSM 2661 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanocaldococcus;species:Methanocaldococcus jannaschii; 5205.5177 3822.9816 5576.9567 2586.1514 3053.4831 359344662 FBPase Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 6209.0461 148553813 dxna Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas wittichii RW1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas;species:Sphingomonas wittichii; 5334.2953 323498920 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sinaloensis DSM 21326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio sinaloensis; 8286.7891 89346705 nosz Nitrogen Denitrification NA Rhodoferax ferrireducens T118 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Albidiferax;species:Albidiferax ferrireducens; 16375.4135 290958267 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces scabiei 87.22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces scabiei; 11298.9751 70672987 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 6051.113 4713.5135 1804.1018 339481952 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Nitrosomonas sp. Is79A3 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 6322.3693 517424 mcra Carbon Cycling Methane Methanogenesis Methanothermobacter thermautotrophicus superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanothermobacter; 6212.8032 296101523 amyA Carbon Cycling Carbon degradation Starch Enterobacter cloacae subsp. cloacae ATCC 13047 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 14030.51735 340027053 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4976.8059 290968999 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Megasphaera genomosp. type_1 str. 28L superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera;species:Megasphaera genomosp. type_1; 5509.3813 108766100 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin Rubrobacter xylanophilus DSM 9941 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Rubrobacterales;family:Rubrobacteraceae;genus:Rubrobacter;species:Rubrobacter xylanophilus; 6157.6675 345908268 amyA Carbon Cycling Carbon degradation Starch Dorea formicigenerans 4_6_53AFAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 7785.2208 332681867 amyA Carbon Cycling Carbon degradation Starch Capnocytophaga sp. oral taxon 329 str. F0087 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga;species:Capnocytophaga sp. oral taxon 329; 6715.4617 223935749 endoglucanase Carbon Cycling Carbon degradation Cellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 41965.5229 11602.434 89098525 RgaE Carbon Cycling Carbon degradation Pectin Bacillus sp. NRRL B-14911 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 17498.6057 67516765 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; 9001.4659 83943220 tktA Carbon Cycling Carbon fixation Calvin cycle Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 4716.7836 319957050 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Nitratifractor salsuginis DSM 16511 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;genus:Nitratifractor;species:Nitratifractor salsuginis; 5881.83 2713.2685 4552.9154 2897.0215 322707825 bph Organic Remediation Aromatics Aromatic carboxylic acid Metarhizium anisopliae ARSEF 23 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium;species:Metarhizium anisopliae; 5444.0324 373888340 RgaE Carbon Cycling Carbon degradation Pectin Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 10190.5287 227326268 arsc Metal Homeostasis Arsenic Detoxification Pectobacterium carotovorum subsp. carotovorum WPP14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 8621.92 16119768 mer Metal Homeostasis Mercury Detoxification Agrobacterium tumefaciens str. C58 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 9187.5607 325842567 amyA Carbon Cycling Carbon degradation Starch Turicibacter sp. HGF1 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Turicibacter; 6378.8223 3091.6311 1255502 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 10417.0847 41033601 fumarase_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus tenax superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus; 4842.8605 4747.1617 379990729 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7710.9089 260850315 mnp Carbon Cycling Carbon degradation Lignin Hygrophorus agathosmus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Hygrophoraceae;genus:Hygrophorus; 8716.7385 269933555 cda Carbon Cycling Carbon degradation Starch Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 5185.9581 313900889 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. HGF2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 10401.1171 67854894 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Crocosphaera watsonii WH 8501 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Crocosphaera;species:Crocosphaera watsonii; 8308.7691 354605229 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Alistipes indistinctus YIT 12060 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Rikenellaceae;genus:Alistipes;species:Alistipes indistinctus; 5116.105 2047.8598 298719706 ppx Phosphorus Polyphosphate degradation NA Comamonas testosteroni S44 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas;species:Comamonas testosteroni; 60700.2408 341637211 cysJ Sulfur Reduction NA Vibrio cholerae HE-09 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 6673.9011 302413761 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Verticillium albo-atrum VaMs.102 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium;species:Verticillium albo-atrum; 6275.5753 77378697 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 6153.7276 10850.3377 260605792 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 689449.8058 197749341 napa Nitrogen Dissimilatory N reduction NA Mannheimia haemolytica PHL213 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Mannheimia;species:Mannheimia haemolytica; 8296.0896 15487.6525 227088972 amyA Carbon Cycling Carbon degradation Starch Lactobacillus hilgardii ATCC 8290 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus hilgardii; 32005.09 302550630 amyA Carbon Cycling Carbon degradation Starch Streptomyces viridochromogenes DSM 40736 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces viridochromogenes; 5674.1729 260608635 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio coralliilyticus ATCC BAA-450 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio coralliilyticus; 6485.7377 4998.4173 223934795 ara Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 6187.6784 326331705 bphd Organic Remediation Aromatics Polycyclic aromatics Nocardioidaceae bacterium Broad-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae; 5279.2574 218775036 phenol_oxidase Carbon Cycling Carbon degradation Lignin Pleurotus ostreatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Pleurotaceae;genus:Pleurotus; 47532.506 257061937 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 8802 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 22495.9552 317114884 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Thermovibrio ammonificans HB-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Desulfurobacteriaceae;genus:Thermovibrio;species:Thermovibrio ammonificans; 6708.7277 7152.6661 342217957 ppx Phosphorus Polyphosphate degradation NA Megasphaera sp. UPII 135-E superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 17618.0454 312868829 badh Organic Remediation Aromatics Other aromatics Lactobacillus oris PB013-T2-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus oris; 72391.2817 159883979 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Schizosaccharomyces pombe superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Schizosaccharomycetes;order:Schizosaccharomycetales;family:Schizosaccharomycetaceae;genus:Schizosaccharomyces; 8465.818 78171451 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Chlorobium chlorochromatii CaD3 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium chlorochromatii; 8201.8335 4012.8736 218667044 arsc Metal Homeostasis Arsenic Detoxification Acidithiobacillus ferrooxidans ATCC 23270 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus ferrooxidans; 815027.245 119483130 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 6998.382 73544824 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured soil bacterium superkingdom:Bacteria; 7642.338 5024.512 2315.196 227378474 ara Carbon Cycling Carbon degradation Hemicellulose Kribbella flavida DSM 17836 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardioidaceae;genus:Kribbella;species:Kribbella flavida; 5986.7133 186459234 ara Carbon Cycling Carbon degradation Hemicellulose bacterium Ellin514 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobia subdivision 3;genus:Pedosphaera;species:Pedosphaera parvula; 10413.6121 333111936 chitinase Carbon Cycling Carbon degradation Chitin Thermoanaerobacterium xylanolyticum LX-11 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Thermoanaerobacterium;species:Thermoanaerobacterium xylanolyticum; 7081.9633 1869.8858 4560.959 50299538 phytase Phosphorus Phytic acid hydrolysis NA Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 11751.6524 2970.439 218989020 phenol_oxidase Carbon Cycling Carbon degradation Lignin Clitocybe ditopa superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 10764.0737 115432148 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6318.8162 221533152 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Rhodobacteraceae bacterium KLH11 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 2245.6175 372209307 xyla Carbon Cycling Carbon degradation Hemicellulose Flavobacteriaceae bacterium S85 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae; 2571.7138 261212392 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. RC341 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2519.8532 392952249 alkb Organic Remediation Other Hydrocarbons NA Hydrocarboniphaga effusa AP103 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Sinobacteraceae;genus:Hydrocarboniphaga;species:Hydrocarboniphaga effusa; 2944.7962 6061.8367 3541.7354 289164542 b_lactamase Virulence Antibiotic resistance Degradation Legionella longbeachae NSW150 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella longbeachae; 2159.9483 169846933 mannanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 2322.6306 388601671 ppx Phosphorus Polyphosphate degradation NA Vibrio campbellii DS40M4 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio campbellii; 3444.6291 59044725 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin uncultured bacterium superkingdom:Bacteria; 2481.0251 3842.1804 332377166 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 21121.869 253274.7126 73678.6036 169117849 mer Metal Homeostasis Mercury Detoxification uncultured organism 3588.0008 357238266 amyA Carbon Cycling Carbon degradation Starch Streptococcus ictaluri 707-05 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus ictaluri; 4019.224 133915200 ppk Phosphorus Polyphosphate synthesis NA Saccharopolyspora erythraea NRRL 2338 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharopolyspora;species:Saccharopolyspora erythraea; 2054.737 254446357 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 2829.5969 212534926 alpha_galactosidase_fungi Carbon Cycling Carbon degradation Other Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 4011.9026 157317024 linb Organic Remediation Pesticides related compound NA Shewanella sediminis HAW-EB3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella sediminis; 9624.5982 34494863 urec Nitrogen Ammonification NA Haloarcula japonica superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula; 2953.9919 2692.4416 336436763 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 8790.3798 8683.7059 6263.5978 384099120 ppx Phosphorus Polyphosphate degradation NA Imtechella halotolerans K1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Imtechella;species:Imtechella halotolerans; 3195.3998 49072.2928 159882939 SoxB Sulfur Sulfur Oxidation NA Hydrogenivirga sp. 128-5-R1-1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenivirga; 3526.5518 84778377 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6897.6331 295064382 cda Carbon Cycling Carbon degradation Starch Lactobacillus amylolyticus DSM 11664 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus amylolyticus; 2255.0562 308272652 dsra Sulfur sulfite reduction NA uncultured Desulfobacterium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 4022.5354 123505659 cda Carbon Cycling Carbon degradation Starch Trichomonas vaginalis G3 superkingdom:Eukaryota;order:Trichomonadida;family:Trichomonadidae;genus:Trichomonas;species:Trichomonas vaginalis; 4664.811 218081361 xylanase Carbon Cycling Carbon degradation Hemicellulose Epidinium ecaudatum superkingdom:Eukaryota;class:Litostomatea;order:Entodiniomorphida;family:Ophryoscolecidae;genus:Epidinium; 2691.9992 7386.0073 328917286 chnb Organic Remediation Other Hydrocarbons NA Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 2129.4038 1858.9326 269791691 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thermanaerovibrio acidaminovorans DSM 6589 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Thermanaerovibrio;species:Thermanaerovibrio acidaminovorans; 2275.8261 169152404 cmci Organic Remediation Aromatics Other aromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2441.0717 329896386 SoxA Sulfur Sulfur Oxidation NA gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 2425.905 148656906 tehb Metal Homeostasis Tellurium Detoxification Roseiflexus sp. RS-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus; 2900.1406 4871.2488 302880353 lactase_fungi Carbon Cycling Carbon degradation Lactose Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 3670.9848 338824135 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Agrobacterium tumefaciens F2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium;species:Agrobacterium tumefaciens; 2545.4687 308169588 pula Carbon Cycling Carbon degradation Starch Lactobacillus iners SPIN 2503V10-D superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus iners; 3183.3784 378402000 nifh Nitrogen Nitrogen fixation NA Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 2208.351 4860.1106 4784.7086 2977.4117 154245657 tktA Carbon Cycling Carbon fixation Calvin cycle Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 41097.8855 34541491 ppk Phosphorus Polyphosphate synthesis NA Porphyromonas gingivalis W83 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Porphyromonas;species:Porphyromonas gingivalis; 2421.5418 68304957 dsrB Sulfur sulfite reduction NA uncultured bacterium BAC13K9BAC superkingdom:Bacteria; 4235.5164 7266.7448 257453564 TIM Carbon Cycling Carbon fixation Calvin cycle Enhydrobacter aerosaccus SK60 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Enhydrobacter;species:Enhydrobacter aerosaccus; 14464.0083 16058.7832 45934277 actin_Rhizaria Other Phylogenetic NA Collozoum inerme superkingdom:Eukaryota;class:Polycystinea;order:Spumellaria;family:Sphaerozoidae;genus:Collozoum; 28130.9126 295799289 cysJ Sulfur Reduction NA Xylella fastidiosa Temecula1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xylella;species:Xylella fastidiosa; 7340.9886 55773483 aoxb Metal Homeostasis Arsenic Detoxification Thermus thermophilus HB8 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus thermophilus; 2097.6766 31337504 rd Organic Remediation Chlorinated solvents NA Sulfurospirillum multivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Sulfurospirillum; 3195.1208 384066284 chitinase Carbon Cycling Carbon degradation Chitin Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 2432.2075 2370.2104 320161031 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 2461.5482 118589805 amyA Carbon Cycling Carbon degradation Starch Stappia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 9422.3063 225792253 amyA Carbon Cycling Carbon degradation Starch Acidobacterium capsulatum ATCC 51196 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Acidobacterium;species:Acidobacterium capsulatum; 4346.7616 330468772 endoglucanase Carbon Cycling Carbon degradation Cellulose Verrucosispora maris AB-18-032 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micromonosporaceae;genus:Verrucosispora;species:Verrucosispora maris; 8503.9518 87308491 arsc Metal Homeostasis Arsenic Detoxification Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 5178.2378 114190402 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 2295.1412 146154216 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 4409.7567 156081426 alkb Organic Remediation Other Hydrocarbons NA Geobacillus thermoleovorans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 3624.1787 74660.2148 288333438 amyA Carbon Cycling Carbon degradation Starch Prevotella sp. oral taxon 299 str. F0039 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella sp. oral taxon 299; 1904.2994 167957157 arsc Metal Homeostasis Arsenic Detoxification candidate division TM7 single-cell isolate TM7c superkingdom:Bacteria; 3000.3424 330501989 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas mendocina NK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mendocina; 2016.2112 7118.8647 110286970 phn Organic Remediation Herbicides related compound NA Mesorhizobium sp. BNC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Chelativorans; 25400.6267 391216.1606 94516.578 242264839 amyA Carbon Cycling Carbon degradation Starch Thermococcus sibiricus MM 739 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus sibiricus; 4649.9278 499736 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2591.89 3596.5194 270298364 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 71022.0024 343397003 amyA Carbon Cycling Carbon degradation Starch Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus constellatus; 4658.6518 313126896 rubisco Carbon Cycling Carbon fixation Calvin cycle Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 3575.9024 221164464 xlnd Organic Remediation Aromatics Other aromatics Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 13775.6475 398142214 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. GM24 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3627.6794 262014350 protease_serine_fungi Carbon Cycling Carbon degradation protein Dactylellina appendiculata superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Orbiliomycetes;order:Orbiliales;family:Orbiliaceae;genus:Dactylellina; 3646.9895 301058518 rd Organic Remediation Chlorinated solvents NA delta proteobacterium NaphS2 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2277.4619 11496163 chitinase Carbon Cycling Carbon degradation Chitin Vibrio sp. Fi:7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 2911.3075 151248 dehh109 Organic Remediation Chlorinated solvents NA superkingdom:Bacteria;phylum:Proteobacteria; 4610.9656 328958026 amyA Carbon Cycling Carbon degradation Starch Carnobacterium sp. 17-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 2696.9093 111919328 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3445.6393 13281.6308 340553705 tktA Carbon Cycling Carbon fixation Calvin cycle Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 2477.2579 208609104 rd Organic Remediation Chlorinated solvents NA uncultured bacterium superkingdom:Bacteria; 7440.6569 2749.0235 355540759 pcpe Organic Remediation Herbicides related compound NA Mesorhizobium amorphae CCNWGS0123 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium amorphae; 3391.0089 18489.2685 169665519 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 2204.8011 71143908 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 2147.5201 90105985 TIM Carbon Cycling Carbon fixation Calvin cycle Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2907.8708 99083383 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5052.9371 169613627 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Phaeosphaeria;species:Phaeosphaeria nodorum; 3956.3629 6789.7703 117959685 phenol_oxidase Carbon Cycling Carbon degradation Lignin Ganoderma lucidum superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Ganodermataceae;genus:Ganoderma; 8334.8185 340841637 nirs Nitrogen Denitrification NA uncultured denitrifying bacterium superkingdom:Bacteria; 7469.2164 119865642 cysI Sulfur Other NA Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 36110.6123 2879.3916 339619586 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Sporosarcina newyorkensis 2681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Sporosarcina;species:Sporosarcina newyorkensis; 7667.6226 299528176 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 53187.9378 110599.849 5528.2088 1895.2455 6768.6319 113952757 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5982.3848 407788175 poba Organic Remediation Aromatics Aromatic carboxylic acid Celeribacter baekdonensis B30 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Celeribacter;species:Celeribacter baekdonensis; 2591.9756 46139299 protease_serine_fungi Carbon Cycling Carbon degradation protein Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 15537.993 31409.0777 89113916 rgh Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 30476.4541 166408398 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 3840.7658 255302432 PRI Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 3290.8263 324114145 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Escherichia fergusonii B253 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 2122.6744 398998412 tfda Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. GM21 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3182.1666 358010175 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3284.3813 188996746 ppx Phosphorus Polyphosphate degradation NA Sulfurihydrogenibium sp. YO3AOP1 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Hydrogenothermaceae;genus:Sulfurihydrogenibium; 3243.1939 8666.5938 374565717 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Megamonas funiformis YIT 11815 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megamonas;species:Megamonas funiformis; 12513.2616 374413678 dsra Sulfur sulfite reduction NA uncultured prokaryote 2253.7025 10317.7226 312440867 arsc Metal Homeostasis Arsenic Detoxification Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 14368.0899 239821340 mer Metal Homeostasis Mercury Detoxification Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 2090.1643 187735787 cysI Sulfur Other NA Akkermansia muciniphila ATCC BAA-835 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae;genus:Akkermansia;species:Akkermansia muciniphila; 2371.1746 374417621 dsra Sulfur sulfite reduction NA Desulfosporosinus youngiae DSM 17734 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus youngiae; 1926.1937 157285638 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3697.4979 345878672 AcnA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 3139.0539 380879108 dsrB Sulfur sulfite reduction NA Thiorhodovibrio sp. 970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiorhodovibrio; 3364.0781 71006620 ara Carbon Cycling Carbon degradation Hemicellulose Ustilago maydis 521 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Ustilaginomycetes;order:Ustilaginales;family:Ustilaginaceae;genus:Ustilago;species:Ustilago maydis; 3644.1207 73762846 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3315.1923 359351876 pme Carbon Cycling Carbon degradation Pectin Sphaerochaeta pleomorpha str. Grapes superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Sphaerochaeta;species:Sphaerochaeta pleomorpha; 3104 110680085 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter denitrificans OCh 114 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter denitrificans; 35682.8691 157679433 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3370.6615 330958730 phn Organic Remediation Herbicides related compound NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 6894.5276 21091.3834 4486.0168 254514838 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 12443.3193 151302147 aps_apra Sulfur adenylylsulfate reductase NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 3656.2663 328470289 B_lactamase_A Virulence Antibiotic resistance Degradation Vibrio parahaemolyticus 10329 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 6155.3567 8710.5637 3161.902 225175255 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dethiobacter alkaliphilus AHT 1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Dethiobacter;species:Dethiobacter alkaliphilus; 3098.2729 385809432 nosz Nitrogen Denitrification NA Ignavibacterium album JCM 16511 superkingdom:Bacteria;phylum:Ignavibacteriae;class:Ignavibacteria;order:Ignavibacteriales;family:Ignavibacteriaceae;genus:Ignavibacterium;species:Ignavibacterium album; 2549.5883 337746322 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 2507.0424 161380292 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 4627.8286 5302.0362 379052525 pcpb Organic Remediation Herbicides related compound NA Salmonella enterica subsp. houtenae str. ATCC BAA-1581 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 2810.2688 78102267 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2992.0007 242121158 dsrB Sulfur sulfite reduction NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 3059.605 300433312 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coriolopsis rigida superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Coriolopsis; 1988.8213 325059441 cysJ Sulfur Reduction NA Agrobacterium sp. H13-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 6611.6393 109444.4986 10852.2807 63025000 protease_serine_fungi Carbon Cycling Carbon degradation protein Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 28981.5582 156869326 amyA Carbon Cycling Carbon degradation Starch Clostridium leptum DSM 753 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium leptum; 2273.677 2213.252 4974.7854 218172427 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2547.2795 238831917 amyA Carbon Cycling Carbon degradation Starch Lactobacillus jensenii 269-3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus jensenii; 289255.6645 4886.0224 121495572 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3563.3757 315132189 terc Metal Homeostasis Tellurium Detoxification Helicobacter felis ATCC 49179 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter felis; 5265.6765 291245536 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 2372.8396 338974049 phn Organic Remediation Herbicides related compound NA Bradyrhizobiaceae bacterium SG-6C superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae; 7304.4172 157085173 phn Organic Remediation Herbicides related compound NA Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 4695.2901 126618883 nifh Nitrogen Nitrogen fixation NA Cyanothece sp. CCY0110 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 3105.5038 117577916 nosz Nitrogen Denitrification NA Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 12367.37 86609747 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2773.6005 313495562 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Candidatus Liberibacter solanacearum CLso-ZC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Candidatus Liberibacter;species:Candidatus Liberibacter solanacearum; 8362.2821 171684841 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 4745.0214 87288390 xyla Carbon Cycling Carbon degradation Hemicellulose Blastopirellula marina DSM 3645 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;family:Planctomycetaceae;genus:Blastopirellula;species:Blastopirellula marina; 3872.3581 328842343 glucoamylase Carbon Cycling Carbon degradation Starch Asticcacaulis biprosthecum C19 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis biprosthecium; 2649.1878 190696452 ppk Phosphorus Polyphosphate synthesis NA Rhizobium etli CIAT 652 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 3258.4124 5057.2529 3569.1703 116512409 arsc Metal Homeostasis Arsenic Detoxification Lactococcus lactis subsp. cremoris SK11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 7652.8898 340550949 poba Organic Remediation Aromatics Aromatic carboxylic acid Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 3206.1822 309261249 phenol_oxidase Carbon Cycling Carbon degradation Lignin Verrucomicrobiaceae bacterium ONA9 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales;family:Verrucomicrobiaceae; 2332.829 156857755 aps_apra Sulfur adenylylsulfate reductase NA uncultured bacterium superkingdom:Bacteria; 8324.3694 254968981 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus caldus ATCC 51756 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus;species:Acidithiobacillus caldus; 3092.3063 6910.6823 159765 actin_ciliophora Other Phylogenetic NA Sterkiella nova superkingdom:Eukaryota;class:Spirotrichea;order:Sporadotrichida;family:Oxytrichidae;genus:Sterkiella; 2489.9998 153888470 arylest Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12D superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 367682.0704 153002012 tehb Metal Homeostasis Tellurium Detoxification Shewanella baltica OS185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella baltica; 2702.7655 4542.0653 226228172 nirk Nitrogen Denitrification NA Gemmatimonas aurantiaca T-27 superkingdom:Bacteria;phylum:Gemmatimonadetes;class:Gemmatimonadetes;order:Gemmatimonadales;family:Gemmatimonadaceae;genus:Gemmatimonas;species:Gemmatimonas aurantiaca; 3040.3114 299782349 fosa Virulence Antibiotic resistance Degradation Escherichia coli superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia; 2622.6165 323365250 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 3463.13 347531909 ppx Phosphorus Polyphosphate degradation NA Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 15047.556 156861511 amyA Carbon Cycling Carbon degradation Starch Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 2894.6938 66847744 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 2926.4388 308272247 amyA Carbon Cycling Carbon degradation Starch uncultured Desulfobacterium sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfobacterium; 2177.5365 186466559 b_lactamase Virulence Antibiotic resistance Degradation Nostoc punctiforme PCC 73102 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;species:Nostoc punctiforme; 2467.112 5155.2917 288803015 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella melaninogenica D18 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella melaninogenica; 4502.3632 340786749 gdh Nitrogen Ammonification NA Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 2005.8485 4741.1439 255303245 TIM Carbon Cycling Carbon fixation Calvin cycle Acinetobacter radioresistens SK82 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter radioresistens; 4358.6454 333959521 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Serratia sp. AS13 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia; 15715.6318 223587074 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 4248.9085 134266444 cysJ Sulfur Reduction NA Geobacillus thermodenitrificans NG80-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus;species:Geobacillus thermodenitrificans; 4617.852 254462628 xyla Carbon Cycling Carbon degradation Hemicellulose Rhodobacterales bacterium HTCC2083 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae; 4817.3839 315126966 arsc Metal Homeostasis Arsenic Detoxification Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 2345.8061 392519192 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. trifolii WU95 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 2572.6443 11566.7755 145961017 atza Organic Remediation Herbicides related compound NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 3802.949 14276812 dsrB Sulfur sulfite reduction NA Desulfotomaculum aeronauticum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum; 7320.6492 91693574 ben_bcla virulence NA NA Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 4376.9661 3824.9517 164519662 phytase Phosphorus Phytic acid hydrolysis NA Megasphaera elsdenii superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Megasphaera; 2028.8276 374374149 amyA Carbon Cycling Carbon degradation Starch Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 2335.9189 347526579 B_lactamase_A Virulence Antibiotic resistance Degradation Sphingobium sp. SYK-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 3369.4748 2566.0988 86137915 FBPase Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 5073.8185 257126873 cda Carbon Cycling Carbon degradation Starch Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 2215.2724 5107.7699 328670841 pmoa Carbon Cycling Methane Methane oxidation uncultured candidate division NC10 bacterium superkingdom:Bacteria; 60863.8212 359756308 ppx Phosphorus Polyphosphate degradation NA Aggregatibacter actinomycetemcomitans RhAA1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Aggregatibacter;species:Aggregatibacter actinomycetemcomitans; 12216.9692 363419613 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 2763.7745 2675.0632 350530373 chitinase Carbon Cycling Carbon degradation Chitin Vibrio rotiferianus DAT722 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio rotiferianus; 7853.2968 190663721 phenol_oxidase Carbon Cycling Carbon degradation Lignin Clavariopsis aquatica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Microascales;family:Halosphaeriaceae;genus:Clavariopsis; 14511.3498 332363806 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK355 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 4769.9679 157285373 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3293.5898 237735760 cellobiase Carbon Cycling Carbon degradation Cellulose Mollicutes bacterium D7 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 3341.873 260612732 tktA Carbon Cycling Carbon fixation Calvin cycle Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 2721.9619 18123.0705 330958283 phytase Phosphorus Phytic acid hydrolysis NA Pseudomonas syringae pv. maculicola str. ES4326 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae group genomosp. 3; 2302.1714 392529752 msad Organic Remediation Others NA Carnobacterium maltaromaticum ATCC 35586 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium;species:Carnobacterium maltaromaticum; 5098.3565 340912449 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 2629.6597 45386107 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 3289.3712 2536.9072 30315038 exoglucanase Carbon Cycling Carbon degradation Cellulose Piromyces sp. E2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Neocallimastigomycota;class:Neocallimastigomycetes;order:Neocallimastigales;family:Neocallimastigaceae;genus:Piromyces; 3098.9426 146396415 mer Metal Homeostasis Mercury Detoxification Geobacter uraniumreducens Rf4 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter uraniireducens; 3070.4271 386818344 xylj Organic Remediation Aromatics BTEX and related aromatics Thiothrix nivea DSM 5205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Thiothrix;species:Thiothrix nivea; 11461.7565 323365012 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 14635.9661 390433552 ppx Phosphorus Polyphosphate degradation NA Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 17751.1482 32478358 nosz Nitrogen Denitrification NA uncultured soil bacterium superkingdom:Bacteria; 2559.9801 119391549 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3783.3523 86611461 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 3347.3358 337733887 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4416.7073 256728981 endochitinase Carbon Cycling Carbon degradation Chitin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 2687.0764 2647.7069 115373097 pula Carbon Cycling Carbon degradation Starch Stigmatella aurantiaca DW4/3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Stigmatella;species:Stigmatella aurantiaca; 87883.9719 356739945 arsc Metal Homeostasis Arsenic Detoxification Streptococcus pseudoporcinus LQ 940-04 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pseudoporcinus; 4777.3344 28763.0279 164508123 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 3026.3525 398853937 poba Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. GM80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3304.7294 2792.3188 171465246 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 17288.4366 110168354 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Trichodesmium erythraeum IMS101 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Trichodesmium;species:Trichodesmium erythraeum; 3140.7362 3342.4495 161161178 mer Metal Homeostasis Mercury Detoxification Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 4565.5882 118668489 mer Metal Homeostasis Mercury Detoxification Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; 3608.187 6220.0963 315665770 RgaE Carbon Cycling Carbon degradation Pectin Prevotella salivae DSM 15606 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella salivae; 3060.6448 189428392 arsc Metal Homeostasis Arsenic Detoxification Bifidobacterium longum DJO10A superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium longum; 3131.8558 298244524 xylanase Carbon Cycling Carbon degradation Hemicellulose Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 2952.4264 14015.0492 3287.9867 2639.8471 5108.3248 332707859 ppx Phosphorus Polyphosphate degradation NA Moorea producta 3L superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Moorea;species:Moorea producens; 7466.9794 359733662 tfth Organic Remediation Aromatics Chlorinated aromatics Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 2083.8431 1966.5497 373856470 badh Organic Remediation Aromatics Other aromatics Bacillus sp. 1NLA3E superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3947.2475 99030517 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 10274.4928 220906519 ppx Phosphorus Polyphosphate degradation NA Cyanothece sp. PCC 7425 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2723.2636 149832186 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 2241.8412 261857017 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7992.3134 364560202 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 2555.8285 3989.788 225701540 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Streptococcus equi subsp. zooepidemicus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus equi; 2195.8954 359308402 amyA Carbon Cycling Carbon degradation Starch Gordonia effusa NBRC 100432 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia effusa; 2940.2457 302902547 ppx Phosphorus Polyphosphate degradation NA Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 2275.1629 224540054 xylanase Carbon Cycling Carbon degradation Hemicellulose Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 6925.1023 302906453 badh Organic Remediation Aromatics Other aromatics Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 5436.3107 29895.1462 268161953 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 2406.2824 89513004 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2560.0185 336118920 gdh Nitrogen Ammonification NA Microlunatus phosphovorus NM-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Microlunatus;species:Microlunatus phosphovorus; 5542.37 118163681 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Mycobacterium avium 104 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium; 11547.2935 386431656 nitro Organic Remediation Others NA Herbaspirillum sp. GW103 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 2331.9643 147886116 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 51053.7784 187928944 arylest Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia;species:Ralstonia pickettii; 299003.8109 225378143 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Roseburia inulinivorans DSM 16841 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia inulinivorans; 2305.744 345858683 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus sp. OT superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus; 3547.4435 386857301 gdh Nitrogen Ammonification NA Deinococcus gobiensis I-0 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus gobiensis; 8350.5541 2349.4694 2874.335 194684030 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Proteus mirabilis HI4320 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Proteus;species:Proteus mirabilis; 327916.4895 421953186 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7397.6471 339498184 amyA Carbon Cycling Carbon degradation Starch Leuconostoc pseudomesenteroides KCTC 3652 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc pseudomesenteroides; 10309.7984 366984532 amyA Carbon Cycling Carbon degradation Starch Oenococcus kitaharae DSM 17330 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus kitaharae; 7677.0432 1775.8521 90954647 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 9295.687 4121.2573 319943111 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Lautropia mirabilis ATCC 51599 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Lautropia;species:Lautropia mirabilis; 13506.6716 4442.8145 297562915 xylanase Carbon Cycling Carbon degradation Hemicellulose Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiopsaceae;genus:Nocardiopsis;species:Nocardiopsis dassonvillei; 21808.0738 13973.2336 46307884 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8208.7073 374705236 ppx Phosphorus Polyphosphate degradation NA Pseudomonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 10019.9498 256545077 amyA Carbon Cycling Carbon degradation Starch Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 713375.6502 258578225 badh Organic Remediation Aromatics Other aromatics Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 10060.6518 229489260 cmci Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis SK121 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 7756.1356 5216.7314 126740144 ben_bcla virulence NA NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 8489.5799 4396.607 336427022 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lachnospiraceae bacterium 3_1_57FAA_CT1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 9989.0165 2880.1316 3500.018 15606732 sucD Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 7489.5785 271500939 arsc Metal Homeostasis Arsenic Detoxification Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 11694.9669 189466749 cda Carbon Cycling Carbon degradation Starch Bacteroides intestinalis DSM 17393 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides intestinalis; 40124.0586 71280187 amyA Carbon Cycling Carbon degradation Starch Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 8220.8736 115491303 exoglucanase Carbon Cycling Carbon degradation Cellulose Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 19638.5504 19915158 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 21331.0993 37519942 amyA Carbon Cycling Carbon degradation Starch Gloeobacter violaceus PCC 7421 superkingdom:Bacteria;phylum:Cyanobacteria;class:Gloeobacteria;order:Gloeobacterales;genus:Gloeobacter;species:Gloeobacter violaceus; 759920.7022 92858.1138 333790325 cellobiase Carbon Cycling Carbon degradation Cellulose Agrobacterium sp. ATCC 31749 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Agrobacterium; 14355.262 328859965 ara Carbon Cycling Carbon degradation Hemicellulose Melampsora larici-populina 98AG31 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Melampsoraceae;genus:Melampsora;species:Melampsora larici-populina; 12068.7557 259418049 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Silicibacter sp. TrichCH4B superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria; 11887.8063 4335.6553 359798601 FBPase Carbon Cycling Carbon fixation Calvin cycle Achromobacter arsenitoxydans SY8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter arsenitoxydans; 20075.4861 154244928 dehh109 Organic Remediation Chlorinated solvents NA Xanthobacter autotrophicus Py2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Xanthobacter;species:Xanthobacter autotrophicus; 25489.6607 239618369 cda Carbon Cycling Carbon degradation Starch Kosmotoga olearia TBF 19.5.1 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Kosmotoga;species:Kosmotoga olearia; 16752.9352 251789753 rgl Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 72748.4917 238852254 phospholipase_B_fungi virulence degradation NA Clavispora lusitaniae ATCC 42720 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Metschnikowiaceae;genus:Clavispora;species:Clavispora lusitaniae; 8738.2712 359345680 norb Nitrogen Denitrification NA Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 11232.6941 220933499 SoxA Sulfur Sulfur Oxidation NA Thioalkalivibrio sulfidophilus HL-EbGr7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 7735.3333 410622556 alkk Organic Remediation Others NA Glaciecola pallidula DSM 14239 = ACAM 615 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola pallidula; 7656.9384 2854.1949 32480565 gdh Nitrogen Ammonification NA Porphyra yezoensis superkingdom:Eukaryota;class:Bangiophyceae;order:Bangiales;family:Bangiaceae;genus:Pyropia; 94329.2219 85834.6288 312602815 arsc Metal Homeostasis Arsenic Detoxification Burkholderia rhizoxinica HKI 454 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia rhizoxinica; 15757.7795 391875343 terc Metal Homeostasis Tellurium Detoxification Bacillus macauensis ZFHKF-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus macauensis; 12702.6679 110550222 pchcf Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. FRC-32 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter; 41548.9892 6859.2287 212639412 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Anoxybacillus flavithermus WK1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Anoxybacillus;species:Anoxybacillus flavithermus; 13163.8663 280977835 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellulosilyticum ruminicola superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum; 10273.6023 146330532 glucoamylase Carbon Cycling Carbon degradation Starch Thermomyces lanuginosus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;genus:Thermomyces; 11141.7099 126092141 Sir Sulfur sulfite reduction NA Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 16059.4041 328453368 ara Carbon Cycling Carbon degradation Hemicellulose Desulfobacca acetoxidans DSM 11109 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Desulfobacca;species:Desulfobacca acetoxidans; 319141.7584 156563551 chitinase Carbon Cycling Carbon degradation Chitin Vibrio proteolyticus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 9261.9071 404274616 chnd Organic Remediation Other Hydrocarbons NA Leptospira licerasiae str. MMD4847 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 9632.2072 6288.8195 3410.1932 6238.7223 241191022 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium animalis subsp. lactis Bl-04 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium animalis; 7920.2772 9420.7211 5365.3115 46308018 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 25474.7056 3981.6601 117579871 nbac Organic Remediation Aromatics Nitoaromatics Gramella forsetii KT0803 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gramella;species:Gramella forsetii; 7528.2263 126952448 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 7244.1966 293380624 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus crispatus 214-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus crispatus; 333252.6599 255945371 glucoamylase Carbon Cycling Carbon degradation Starch Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 335402.6107 393703432 amyA Carbon Cycling Carbon degradation Starch Scardovia wiggsiae F0424 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Scardovia;species:Scardovia wiggsiae; 11706.791 338211325 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Runella slithyformis DSM 19594 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Runella;species:Runella slithyformis; 8835.4511 4956.8901 340000495 cysI Sulfur Other NA Salmonella bongori NCTC 12419 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella bongori; 9791.9349 256544537 amyA Carbon Cycling Carbon degradation Starch Anaerococcus vaginalis ATCC 51170 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus vaginalis; 230106.2499 211960047 nirs Nitrogen Denitrification NA Pseudovibrio sp. JE062 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 13472.6449 329129304 ppx Phosphorus Polyphosphate degradation NA Lactobacillus buchneri NRRL B-30929 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus buchneri; 17794.4116 336105252 ara Carbon Cycling Carbon degradation Hemicellulose Cellvibrio] gilvus ATCC 13127 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Cellulomonadaceae;genus:Cellulomonas;species:[Cellvibrio] gilvus; 14217.8292 402756578 xylc Organic Remediation Aromatics BTEX and related aromatics Acinetobacter sp. NCTC 7422 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 9566.7981 375055030 pcag Organic Remediation Aromatics Other aromatics Rhizobium sp. PDO1-076 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium; 57612.2712 1255476 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 9691.2438 376168493 ppx Phosphorus Polyphosphate degradation NA Lactobacillus gastricus PS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 7988.226 3708.0129 2140.8057 73660220 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 901748.2983 162283863 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Hoeflea phototrophica DFL-43 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Hoeflea;species:Hoeflea phototrophica; 26548.4579 383936859 TIM Carbon Cycling Carbon fixation Calvin cycle Rheinheimera nanhaiensis E407-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Rheinheimera;species:Rheinheimera nanhaiensis; 30777.8418 261880803 rgl Carbon Cycling Carbon degradation Pectin Prevotella bergensis DSM 17361 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bergensis; 8671.7722 238610938 pec_Cdeg Carbon Cycling Carbon degradation Pectin Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 74448.0352 288921462 bphF1 Organic Remediation Aromatics Polycyclic aromatics Frankia sp. EUN1f superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 16864.713 390421091 ppx Phosphorus Polyphosphate degradation NA Aequorivita sublithincola DSM 14238 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Aequorivita;species:Aequorivita sublithincola; 9932.4866 315447534 nifh Nitrogen Nitrogen fixation NA Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 144265.3944 73659738 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. CBDB1 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;order:Dehalococcoidales;family:Dehalococcoidaceae;genus:Dehalococcoides;species:Dehalococcoides mccartyi; 15362.9395 377556614 badh Organic Remediation Aromatics Other aromatics Lactobacillus gastricus PS3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gastricus; 10716.9289 77463132 exaa(moxf) Organic Remediation Chlorinated solvents NA Rhodobacter sphaeroides 2.4.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides; 126926.0744 299767076 axe Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 7504.6416 283794455 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter jejuni subsp. jejuni 414 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter jejuni; 717562.9391 121702487 dehh109 Organic Remediation Chlorinated solvents NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 10107.8439 392520844 pcpe Organic Remediation Herbicides related compound NA Rhizobium leguminosarum bv. trifolii WU95 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 21602.7605 116225907 ara Carbon Cycling Carbon degradation Hemicellulose Solibacter usitatus Ellin6076 superkingdom:Bacteria;phylum:Acidobacteria;class:Solibacteres;order:Solibacterales;family:Solibacteraceae;genus:Candidatus Solibacter;species:Candidatus Solibacter usitatus; 10155.5346 5672.9141 3398.9672 4651.305 196190304 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Synechococcus sp. PCC 7335 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 8184.4937 187976335 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 14103.499 6330.1723 83953392 phn Organic Remediation Herbicides related compound NA Sulfitobacter sp. NAS-14.1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 7948.6743 5140.3726 332107784 terc Metal Homeostasis Tellurium Detoxification Rubrivivax benzoatilyticus JA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Rubrivivax;species:Rubrivivax benzoatilyticus; 12981.9402 289503398 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Anaerobaculum hydrogeniformans ATCC BAA-1850 superkingdom:Bacteria;phylum:Synergistetes;class:Synergistia;order:Synergistales;family:Synergistaceae;genus:Anaerobaculum;species:Anaerobaculum hydrogeniformans; 12169.0879 3173.2868 149229146 arsc Metal Homeostasis Arsenic Detoxification Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 12986.9446 17933466 nifh Nitrogen Nitrogen fixation NA enrichment culture bacterium 01 superkingdom:Bacteria; 11699.6829 212530388 cellobiase Carbon Cycling Carbon degradation Cellulose Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10298.7031 210065355 glx Carbon Cycling Carbon degradation Lignin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 10163.698 33243147 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 12019.2952 329896681 arylest Organic Remediation Aromatics Other aromatics gamma proteobacterium IMCC3088 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 17442.0496 167588788 catechol Organic Remediation Aromatics Other aromatics Burkholderia ubonensis Bu superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia ubonensis; 16949.0529 340553182 endoglucanase Carbon Cycling Carbon degradation Cellulose Collimonas fungivorans Ter331 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Collimonas;species:Collimonas fungivorans; 17454.4935 12082148 Rubisco_Haptophyceae Carbon Cycling Carbon fixation Calvin cycle Isochrysis galbana superkingdom:Eukaryota;order:Isochrysidales;family:Isochrysidaceae;genus:Isochrysis; 10059.8975 3010.1404 6778970 phytase Phosphorus Phytic acid hydrolysis NA Debaryomyces occidentalis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Schwanniomyces; 10258.4407 146302287 chitinase Carbon Cycling Carbon degradation Chitin Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 46498.9169 146408010 TIM Carbon Cycling Carbon fixation Calvin cycle Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 16319.6484 189219887 nifh Nitrogen Nitrogen fixation NA Methylacidiphilum infernorum V4 superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum;species:Methylacidiphilum infernorum; 28058.8893 238586785 exoglucanase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 769274.0649 333395135 amyA Carbon Cycling Carbon degradation Starch Lactobacillus coryniformis subsp. coryniformis KCTC 3167 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus coryniformis; 14180.5901 347533233 pme Carbon Cycling Carbon degradation Pectin Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 7918.3643 1712.1537 295663326 phenol_oxidase Carbon Cycling Carbon degradation Lignin Paracoccidioides brasiliensis Pb01 NA 10887.9417 124271091 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 60819.2563 16125671 ara Carbon Cycling Carbon degradation Hemicellulose Caulobacter crescentus CB15 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter vibrioides; 8412.3457 291197080 exoglucanase Carbon Cycling Carbon degradation Cellulose uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 145590.6036 359792162 PRI Carbon Cycling Carbon fixation Calvin cycle Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 13274.069 119491607 amyA Carbon Cycling Carbon degradation Starch Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 11194.2886 385693425 terc Metal Homeostasis Tellurium Detoxification Neisseria sicca VK64 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Neisseria;species:Neisseria sicca; 20694.608 150014788 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured gamma proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 11462.2393 169864558 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 10502.8821 316950499 arsc Metal Homeostasis Arsenic Detoxification Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 21734.3337 13166.719 336068599 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella multisaccharivorax DSM 17128 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella multisaccharivorax; 7580.4096 207340122 chitinase Carbon Cycling Carbon degradation Chitin Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 9082.5479 40647174 actin__Cercozoa Other Phylogenetic NA Sorosphaera veronicae superkingdom:Eukaryota;family:Plasmodiophoridae;genus:Sorosphaera; 27100.9905 332377274 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 9065.1554 301108976 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 12636.5181 126035115 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 8531.618 293393862 ppx Phosphorus Polyphosphate degradation NA Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 7638.9986 36784269 cueo Metal Homeostasis Copper Detoxification Photorhabdus luminescens subsp. laumondii TTO1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Photorhabdus;species:Photorhabdus luminescens; 316219.3735 375317500 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Helicobacter bizzozeronii CCUG 35545 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 9492.04 55823453 tehb Metal Homeostasis Tellurium Detoxification Streptococcus thermophilus CNRZ1066 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus thermophilus; 39314.3615 158138884 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9603.0734 119947038 Sir Sulfur sulfite reduction NA Psychromonas ingrahamii 37 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Psychromonadaceae;genus:Psychromonas;species:Psychromonas ingrahamii; 920726.7286 115387769 tannase_Cdeg Carbon Cycling Carbon degradation Tannins Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 14754.6232 49530233 arylest Organic Remediation Aromatics Other aromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3704.6574 385888932 dsrB Sulfur sulfite reduction NA uncultured prokaryote 4749.6727 167766694 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Clostridium sp. SS2/1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 4661.4697 325546872 xylc Organic Remediation Aromatics BTEX and related aromatics Xanthomonas gardneri ATCC 19865 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Xanthomonadales;family:Xanthomonadaceae;genus:Xanthomonas;species:Xanthomonas gardneri; 3377.0666 326389182 merb Metal Homeostasis Mercury Detoxification Novosphingobium nitrogenifigens DSM 19370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium;species:Novosphingobium nitrogenifigens; 10687.8519 255297750 terc Metal Homeostasis Tellurium Detoxification Corynebacterium tuberculostearicum SK141 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium tuberculostearicum; 4061.6871 3130.1157 3119.4304 110048.8487 227289868 amyA Carbon Cycling Carbon degradation Starch Vibrio vulnificus CMCP6 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio vulnificus; 5848.583 152982608 nasa Nitrogen Assimilatory N reduction NA Janthinobacterium sp. Marseille superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Janthinobacterium; 7390.6839 209967297 rubisco Carbon Cycling Carbon fixation Calvin cycle Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 3705.7692 36379.3544 1982.9459 4080.8853 9971.5236 380767315 chitinase Carbon Cycling Carbon degradation Chitin Treponema saccharophilum DSM 2985 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema saccharophilum; 6233.971 66043564 ppx Phosphorus Polyphosphate degradation NA Pseudomonas syringae pv. syringae B728a superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas syringae; 41483.4066 254029632 narb Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 17722.864 377564641 amyA Carbon Cycling Carbon degradation Starch Gordonia sputi NBRC 100414 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia sputi; 4019.8033 254876685 pgk Carbon Cycling Carbon fixation Calvin cycle Francisella philomiragia subsp. philomiragia ATCC 25015 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Francisellaceae;genus:Francisella;species:Francisella philomiragia; 6815.3046 86611471 lina Organic Remediation Sphingomonas sp. BHC-A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 3678.3698 6967.501 49242742 narg Nitrogen Denitrification NA Staphylococcus aureus subsp. aureus MRSA252 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus aureus; 7128.7974 392967895 amyA Carbon Cycling Carbon degradation Starch Fibrisoma limi BUZ 3 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; 5535.692 364284986 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin uncultured bacterium H2_7 superkingdom:Bacteria; 5537.3781 1788.0116 407022059 chnb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 3451.1762 339275449 dxna Organic Remediation Aromatics Heterocyclic aromatics Paenibacillus sp. TSY30 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 13780.6841 156151286 amyA Carbon Cycling Carbon degradation Starch Geobacillus sp. NBRC 15315 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 3314.1492 1774.1828 40253064 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24827.3828 218173995 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 6254.6649 281421954 amyA Carbon Cycling Carbon degradation Starch Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 3742.2568 300828282 p450aro Organic Remediation Aromatics polycyclic aromatics Beauveria bassiana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Cordycipitaceae;genus:Cordyceps;species:Cordyceps bassiana; 4072.6593 2800.5978 139478569 mer Metal Homeostasis Mercury Detoxification uncultured soil bacterium superkingdom:Bacteria; 13054.8472 3251.5987 261857243 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4432.3955 5736.487 2477.9358 255950126 mdlb Organic Remediation Aromatics Aromatic carboxylic acid Penicillium chrysogenum Wisconsin 54-1255 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium chrysogenum; 4318.1866 157780224 hsp90_Choanoflagellida Other Phylogenetic NA Stephanoeca diplocostata superkingdom:Eukaryota;order:Choanoflagellida;family:Stephanoecidae;genus:Stephanoeca; 4059.1872 209401708 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13187.3414 332980789 ara Carbon Cycling Carbon degradation Hemicellulose Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 4030.0455 17933462 nifh Nitrogen Nitrogen fixation NA Desulfomicrobium baculatum superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfomicrobiaceae;genus:Desulfomicrobium; 5928.6699 109452461 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4147.3694 54016797 bphF1 Organic Remediation Aromatics Polycyclic aromatics Nocardia farcinica IFM 10152 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia farcinica; 7939.8517 302203685 amyA Carbon Cycling Carbon degradation Starch Acetohalobium arabaticum DSM 5501 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Halanaerobiales;family:Halobacteroidaceae;genus:Acetohalobium;species:Acetohalobium arabaticum; 3299.9637 387938040 arsc Metal Homeostasis Arsenic Detoxification Cellvibrio sp. BR superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio; 4323.4143 164456082 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 3562.7647 4312.4163 295430610 cellobiase Carbon Cycling Carbon degradation Cellulose Caulobacter segnis ATCC 21756 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;species:Caulobacter segnis; 5719.3416 2781.1386 2950.8456 150036138 soxY Sulfur Sulfur Oxidation NA sulfur-oxidizing bacterium OBII5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3754.4769 240949992 cysJ Sulfur Reduction NA Actinobacillus minor NM305 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Actinobacillus;species:Actinobacillus minor; 6051.1285 295800179 amyA Carbon Cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 16610.2504 169793544 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 4231.5989 321259565 glx Carbon Cycling Carbon degradation Lignin Cryptococcus gattii WM276 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Tremellomycetes;order:Tremellales;family:Tremellaceae;genus:Filobasidiella;species:Cryptococcus gattii; 5592.7827 365970059 chitinase Carbon Cycling Carbon degradation Chitin Enterobacter cloacae EcWSU1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cloacae; 7837.4029 5879.2671 338811777 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Acetonema longum DSM 6540 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Acetonema;species:Acetonema longum; 18413.7205 3333.1463 308231311 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4946.5567 3138.666 3857.466 119462973 amyA Carbon Cycling Carbon degradation Starch Nodularia spumigena CCY9414 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nodularia;species:Nodularia spumigena; 4587.5306 288818725 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Hydrogenobacter thermophilus TK-6 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Hydrogenobacter;species:Hydrogenobacter thermophilus; 3725.4659 374609271 limeh Carbon Cycling Carbon degradation Terpenes Mycobacterium tusciae JS617 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium tusciae; 8119.9301 302310484 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 4215.5752 209548812 tehb Metal Homeostasis Tellurium Detoxification Rhizobium leguminosarum bv. trifolii WSM2304 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 3690.4396 55978151 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3569.301 3479.5031 86609530 ppk Phosphorus Polyphosphate synthesis NA Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5867.2088 159027237 PRK Carbon Cycling Carbon fixation Calvin cycle Microcystis aeruginosa PCC 7806 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Microcystis;species:Microcystis aeruginosa; 36176.7025 212686597 ppx Phosphorus Polyphosphate degradation NA Providencia alcalifaciens DSM 30120 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia alcalifaciens; 7519.4387 345002085 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces sp. SirexAA-E superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 4435.8635 510492 cda Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4712.7297 384040807 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 14559.5527 116235141 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7595.1393 8804.862 259454864 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Botryotinia fuckeliana superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia; 4199.1869 257372914 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 3642.2642 90954549 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 8163.5156 307949826 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3881.239 2723.6754 323365164 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 5284.9168 3185.8786 2687.1284 269148531 SoxA Sulfur Sulfur Oxidation NA uncultured organism 4533.1049 407365434 dehh109 Organic Remediation Chlorinated solvents NA Pseudomonas mandelii JR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas mandelii; 4134.6378 3271.8068 23575.2037 257056648 poba Organic Remediation Aromatics Aromatic carboxylic acid Saccharomonospora viridis DSM 43017 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Saccharomonospora;species:Saccharomonospora viridis; 3443.8853 5616.4099 170144509 PRK Carbon Cycling Carbon fixation Calvin cycle Burkholderia graminis C4D1M superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia graminis; 4848.7819 320108647 amyA Carbon Cycling Carbon degradation Starch Terriglobus saanensis SP1PR4 superkingdom:Bacteria;phylum:Acidobacteria;class:Acidobacteriia;order:Acidobacteriales;family:Acidobacteriaceae;genus:Terriglobus;species:Terriglobus saanensis; 3950.6871 313125144 tehb Metal Homeostasis Tellurium Detoxification Halogeometricum borinquense DSM 11551 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halogeometricum;species:Halogeometricum borinquense; 7061.9187 365857282 ara Carbon Cycling Carbon degradation Hemicellulose Acetobacteraceae bacterium AT-5844 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae; 4525.1761 284046287 terc Metal Homeostasis Tellurium Detoxification Conexibacter woesei DSM 14684 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Solirubrobacterales;family:Conexibacteraceae;genus:Conexibacter;species:Conexibacter woesei; 4562.8232 1877.548 116507436 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 5749.5393 298531186 tehb Metal Homeostasis Tellurium Detoxification Desulfonatronospira thiodismutans ASO3-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfohalobiaceae;genus:Desulfonatronospira;species:Desulfonatronospira thiodismutans; 3443.7939 2615.8057 282205022 tutfdg Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium superkingdom:Bacteria; 4873.6675 389589966 phytase Phosphorus Phytic acid hydrolysis NA Sphingobium indicum B90A superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium;species:Sphingobium indicum; 7807.5263 32895116 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5965.1665 310760324 napa Nitrogen Dissimilatory N reduction NA Achromobacter xylosoxidans A8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter xylosoxidans; 4954.5815 239996490 pula Carbon Cycling Carbon degradation Starch Alteromonas macleodii ATCC 27126 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 10292.924 300726419 nifh Nitrogen Nitrogen fixation NA Prevotella bryantii B14 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella bryantii; 8621.55 390436418 atzb Organic Remediation Herbicides related compound NA Pantoea agglomerans IG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;species:Pantoea agglomerans; 9619.0037 223470355 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4448.4305 289434388 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria seeligeri serovar 1/2b str. SLCC3954 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria seeligeri; 4901.1106 25896717 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acetobacterium psammolithicum superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Acetobacterium; 12778.6319 294970430 ppx Phosphorus Polyphosphate degradation NA Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 3693.7891 146195022 phn Organic Remediation Herbicides related compound NA Bradyrhizobium sp. ORS278 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 3898.6721 1704.1553 294473133 gdh Nitrogen Ammonification NA Prevotella ruminicola 23 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella ruminicola; 5409.0297 2525.3348 3181.5942 90903253 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10829.0381 3481.5104 366089396 ppx Phosphorus Polyphosphate degradation NA Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 3821.0611 371552513 amyA Carbon Cycling Carbon degradation Starch Streptomyces coelicoflavus ZG0656 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces coelicoflavus; 5641.2586 320159916 xyla Carbon Cycling Carbon degradation Hemicellulose Anaerolinea thermophila UNI-1 superkingdom:Bacteria;phylum:Chloroflexi;class:Anaerolineae;order:Anaerolineales;family:Anaerolineaceae;genus:Anaerolinea;species:Anaerolinea thermophila; 4387.7378 371778371 pme Carbon Cycling Carbon degradation Pectin Anaerophaga sp. HS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Marinilabiliaceae;genus:Anaerophaga; 3900.4867 9773.6896 351594312 one_ring_12diox Organic Remediation Aromatics Other aromatics Pelagibacterium halotolerans B2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Pelagibacterium;species:Pelagibacterium halotolerans; 3663.5483 188583429 scnabc Organic Remediation Others NA Methylobacterium populi BJ001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylobacteriaceae;genus:Methylobacterium;species:Methylobacterium populi; 6266.9039 2474.8199 383773155 arsc Metal Homeostasis Arsenic Detoxification Bradyrhizobium sp. S23321 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 4640.7345 4819.3345 372268831 beta_agarase Carbon Cycling Carbon degradation Agar Alteromonas sp. S89 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Microbulbifer;species:Microbulbifer agarilyticus; 7224.6713 374636587 dsra Sulfur sulfite reduction NA Methanotorris formicicus Mc-S-70 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanococci;order:Methanococcales;family:Methanocaldococcaceae;genus:Methanotorris;species:Methanotorris formicicus; 4093.9005 308067107 arylest Organic Remediation Aromatics Other aromatics Paenibacillus polymyxa E681 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 4574.4176 25292.2819 10458.067 326695559 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 6077.3257 218220382 atza Organic Remediation Herbicides related compound NA Mitsuokella multacida DSM 20544 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Mitsuokella;species:Mitsuokella multacida; 5019.4124 88777262 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 3594.3952 226356642 amyA Carbon Cycling Carbon degradation Starch Deinococcus deserti VCD115 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Deinococcales;family:Deinococcaceae;genus:Deinococcus;species:Deinococcus deserti; 3753.2664 384097427 amyA Carbon Cycling Carbon degradation Starch Imtechella halotolerans K1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Imtechella;species:Imtechella halotolerans; 3993.2141 59957060 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured deep-sea archaeon superkingdom:Archaea; 3935.4643 386823201 Sir Sulfur sulfite reduction NA Serratia plymuthica PRI-2C superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia plymuthica; 9207.2027 3359.212 302885472 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Nectria;species:Nectria haematococca; 4523.1543 164456108 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4016.6778 148996463 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptococcus pneumoniae SP11-BS70 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 4271.7483 126627841 alkb Organic Remediation Other Hydrocarbons NA Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 26808.161 378570522 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5180.5666 3635.3819 383107763 amyA Carbon Cycling Carbon degradation Starch Spirochaeta africana DSM 8902 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Spirochaeta;species:Spirochaeta africana; 3762.5246 256731663 pec_Cdeg Carbon Cycling Carbon degradation Pectin Nectria haematococca mpVI 77-13-4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Fusarium;species:Nectria haematococca; 6025.1304 58701.5185 46400596 terc Metal Homeostasis Tellurium Detoxification Candidatus Protochlamydia amoebophila UWE25 superkingdom:Bacteria;phylum:Chlamydiae;class:Chlamydiae;order:Chlamydiales;family:Parachlamydiaceae;genus:Candidatus Protochlamydia;species:Candidatus Protochlamydia amoebophila; 4294.217 144898602 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Magnetospirillum gryphiswaldense MSR-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Magnetospirillum;species:Magnetospirillum gryphiswaldense; 4426.6112 7846.3841 215459625 mannanase Carbon Cycling Carbon degradation Hemicellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 4260.8308 121495554 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 13819.0719 350544325 arsc Metal Homeostasis Arsenic Detoxification Candidatus Burkholderia kirkii UZHbot1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Candidatus Burkholderia kirkii; 4019.318 2781.913 5230815 rubisco Carbon Cycling Carbon fixation Calvin cycle Nitrobacter winogradskyi superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Nitrobacter; 3882.015 403646206 badh Organic Remediation Aromatics Other aromatics Gordonia sp. KTR9 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 4182.3205 140713641 nasa Nitrogen Assimilatory N reduction NA uncultured marine bacterium superkingdom:Bacteria; 11130.448 384040825 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3678.9495 2791.6102 309855 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 18924.9089 89074207 endochitinase Carbon Cycling Carbon degradation Chitin Photobacterium sp. SKA34 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium; 4720.0969 152966487 xylanase Carbon Cycling Carbon degradation Hemicellulose Kineococcus radiotolerans SRS30216 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Kineosporiaceae;genus:Kineococcus;species:Kineococcus radiotolerans; 4253.7787 402759275 cmci Organic Remediation Aromatics Other aromatics Acinetobacter sp. NCTC 7422 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 5266.9742 6896.4908 302668012 glx Carbon Cycling Carbon degradation Lignin Trichophyton verrucosum HKI 0517 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Trichophyton;species:Trichophyton verrucosum; 4579.0721 121707204 phospholipase_B_fungi virulence degradation NA Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 6345.3507 119698575 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6098.5805 306982121 amyA Carbon Cycling Carbon degradation Starch Cyanothece sp. PCC 7822 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 4134.5559 300605824 arsc Metal Homeostasis Arsenic Detoxification Candidatus Nitrospira defluvii superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Nitrospira; 10356.0685 16519.6212 313675196 amyA Carbon Cycling Carbon degradation Starch Marivirga tractuosa DSM 4126 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Marivirga;species:Marivirga tractuosa; 5867.1631 94481136 bphc Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. A4 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 19957.0106 239525817 terc Metal Homeostasis Tellurium Detoxification Lactobacillus paracasei subsp. paracasei 8700:2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus paracasei; 20532.9447 21217681 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 3531.42 371926909 nosz Nitrogen Denitrification NA Geobacillus uzenensis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 4201.3275 2942.3062 68510360 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5198.1624 118435228 nosz Nitrogen Denitrification NA Labrenzia aggregata IAM 12614 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Labrenzia;species:Labrenzia aggregata; 6017.0841 39550.4517 3745.0615 94471275 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5513.0673 359432910 nirb Nitrogen Assimilatory N reduction NA Pseudoalteromonas sp. BSi20652 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 4051.1666 119173504 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 6015.5792 154250760 mer Metal Homeostasis Mercury Detoxification Parvibaculum lavamentivorans DS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhodobiaceae;genus:Parvibaculum;species:Parvibaculum lavamentivorans; 3274.0511 358010003 catechol Organic Remediation Aromatics Other aromatics Acinetobacter sp. P8-3-8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 38058.1694 326801192 amyA Carbon Cycling Carbon degradation Starch Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 4021.7417 40736913 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4110.737 3696.2871 297627511 amyA Carbon Cycling Carbon degradation Starch Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium freudenreichii; 6002.6819 356690446 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5091.6888 90414395 nosz Nitrogen Denitrification NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 5461.5915 302678895 p450aro Organic Remediation Aromatics polycyclic aromatics Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3544.9334 373100244 oxdb Organic Remediation Aromatics Nitoaromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 39410.7185 5668.3092 295799303 cysJ Sulfur Reduction NA Mycobacterium abscessus superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 4919.2653 302194644 glucoamylase Carbon Cycling Carbon degradation Starch Brevundimonas subvibrioides ATCC 15264 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Brevundimonas;species:Brevundimonas subvibrioides; 50475.2394 110341388 ppx Phosphorus Polyphosphate degradation NA Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 7852.2919 323694298 dsra Sulfur sulfite reduction NA Clostridium symbiosum WAL-14673 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium symbiosum; 5139.3631 19915509 nifh Nitrogen Nitrogen fixation NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 6305.2433 375317608 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Helicobacter bizzozeronii CCUG 35545 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter bizzozeronii; 32220.1564 386813807 hao Nitrogen Nitrification NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 6315.9292 302436525 bphF1 Organic Remediation Aromatics Polycyclic aromatics Streptomyces sp. AA4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; 5596.8818 2024.7391 157912302 xyla Carbon Cycling Carbon degradation Hemicellulose Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 18444.1766 149192412 PRI Carbon Cycling Carbon fixation Calvin cycle Vibrio shilonii AK1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio shilonii; 6266.5598 260901408 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus AQ4037 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 5971.1708 4018.2257 112462087 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5460.4972 227541253 xyla Carbon Cycling Carbon degradation Hemicellulose Corynebacterium glucuronolyticum ATCC 51866 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glucuronolyticum; 8051.944 198267900 urec Nitrogen Ammonification NA Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 19454.7977 3268.6713 293606860 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Achromobacter piechaudii ATCC 43553 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Achromobacter;species:Achromobacter piechaudii; 7659.6692 50551019 cellobiase Carbon Cycling Carbon degradation Cellulose Yarrowia lipolytica superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Dipodascaceae;genus:Yarrowia;species:Yarrowia lipolytica; 6135.9073 84105345 hsp90_Fornicata Other Phylogenetic NA Carpediemonas membranifera superkingdom:Eukaryota;genus:Carpediemonas; 5232.3602 229824675 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Abiotrophia defectiva ATCC 49176 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Abiotrophia;species:Abiotrophia defectiva; 5707.8856 325673055 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 4530.1622 407716195 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics Cycloclasticus sp. P1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Cycloclasticus; 46106.4042 90954559 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7892.1873 3114.6548 302326075 RgaE Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 12023.0019 283951841 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Acidaminococcus fermentans DSM 20731 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Acidaminococcaceae;genus:Acidaminococcus;species:Acidaminococcus fermentans; 5447.4047 229380258 TIM Carbon Cycling Carbon fixation Calvin cycle Oxalobacter formigenes OXCC13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Oxalobacter;species:Oxalobacter formigenes; 8107.4209 2003.2314 210065233 atza Organic Remediation Herbicides related compound NA Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 11786.2628 133778532 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 15697.2057 149229388 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 6276.8461 291567161 mer Metal Homeostasis Mercury Detoxification Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 8829.87 167564772 mer Metal Homeostasis Mercury Detoxification Burkholderia oklahomensis EO147 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia oklahomensis; 37916.9794 154353840 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus amyloliquefaciens FZB42 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus amyloliquefaciens; 47384.879 302688119 Glucose_oxidase_fungi Carbon Cycling Carbon degradation glucose Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 5220.6485 113953433 endoglucanase Carbon Cycling Carbon degradation Cellulose Synechococcus sp. CC9311 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 5754.6805 220913361 amyA Carbon Cycling Carbon degradation Starch Arthrobacter chlorophenolicus A6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter;species:Arthrobacter chlorophenolicus; 25829.141 22138845 amyA Carbon Cycling Carbon degradation Starch Streptococcus sobrinus superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 5000.3906 167390353 actin_amoebozoa Other Phylogenetic NA Entamoeba dispar SAW760 superkingdom:Eukaryota;genus:Entamoeba;species:Entamoeba dispar; 17765.8007 329955758 rgl Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 286215.7309 330403889 chitinase Carbon Cycling Carbon degradation Chitin Lachnospiraceae bacterium 6_1_63FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 13713.5686 260589681 hyaluronidase Carbon Cycling Carbon degradation hyaluronic acid Blautia hansenii DSM 20583 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:Blautia hansenii; 4588.0754 304344080 glucoamylase Carbon Cycling Carbon degradation Starch Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 18642.0354 270210924 alkb Organic Remediation Other Hydrocarbons NA uncultured bacterium superkingdom:Bacteria; 6497.0579 261367456 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Subdoligranulum variabile DSM 15176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Subdoligranulum;species:Subdoligranulum variabile; 4853.8475 3894.1884 324993055 amyA Carbon Cycling Carbon degradation Starch Streptococcus sanguinis SK405 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus sanguinis; 6630.2219 126738079 alkb Organic Remediation Other Hydrocarbons NA Roseobacter sp. SK209-2-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 6003.3786 357394398 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Kitasatospora setae KM-6054 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Kitasatospora;species:Kitasatospora setae; 5842.9028 114227200 dsra Sulfur sulfite reduction NA Alkalilimnicola ehrlichei MLHE-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Alkalilimnicola;species:Alkalilimnicola ehrlichii; 546240.7052 21616728 phenol_oxidase Carbon Cycling Carbon degradation Lignin basidiomycete C30 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Trametes; 6612.5519 325673052 bphd Organic Remediation Aromatics Polycyclic aromatics Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 5429.1597 1863.4242 2697.1737 373465074 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Lactobacillus kisonensis F0435 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus kisonensis; 5533.1786 5119.2876 90328842 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 9661.0459 310825995 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Eubacterium limosum KIST612 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium limosum; 7404.2269 169827517 alkk Organic Remediation Others NA Lysinibacillus sphaericus C3-41 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Lysinibacillus;species:Lysinibacillus sphaericus; 5846.8162 354957502 vgb Virulence Antibiotic resistance Degradation Bradyrhizobium japonicum USDA 6 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 4835.5046 2052.1581 347532325 ara Carbon Cycling Carbon degradation Hemicellulose Roseburia hominis A2-183 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Roseburia;species:Roseburia hominis; 4511.3639 91699409 tktA Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 16315.5283 162568511 aoxb Metal Homeostasis Arsenic Detoxification Pseudomonas sp. 73 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 5466.9874 257387542 chitinase Carbon Cycling Carbon degradation Chitin Halomicrobium mukohataei DSM 12286 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halomicrobium;species:Halomicrobium mukohataei; 4968.3541 289615519 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Sordaria macrospora superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Sordaria; 17865.3179 373870940 mer Metal Homeostasis Mercury Detoxification Gillisia limnaea DSM 15749 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Gillisia;species:Gillisia limnaea; 11056.8254 77963308 arsc Metal Homeostasis Arsenic Detoxification Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 5434.136 237758276 amyA Carbon Cycling Carbon degradation Starch Corynebacterium kroppenstedtii DSM 44385 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium kroppenstedtii; 4646.5462 307550419 sucA_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta distributa DSM 14429 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta distributa; 9695.9435 3704.1399 120973.8108 147886168 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured bacterium superkingdom:Bacteria; 7296.8409 3476.3098 157920901 mer Metal Homeostasis Mercury Detoxification Caldivirga maquilingensis IC-167 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Caldivirga;species:Caldivirga maquilingensis; 7263.0366 109290250 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 7656.755 5909.2351 182892416 urec Nitrogen Ammonification NA Thalassiosira pseudonana superkingdom:Eukaryota;phylum:Bacillariophyta;class:Coscinodiscophyceae;family:Thalassiosiraceae;genus:Thalassiosira; 27384.7596 357214322 chitinase Carbon Cycling Carbon degradation Chitin Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 6272.5002 259164417 catechol Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium efficiens; 11456.641 332699782 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 4901.9257 171854207 exochitinase Carbon Cycling Carbon degradation Chitin Moritella marina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 14768.4868 157147768 amyA Carbon Cycling Carbon degradation Starch Citrobacter koseri ATCC BAA-895 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter koseri; 8226.575 330508790 rubisco Carbon Cycling Carbon fixation Calvin cycle Methanosaeta concilii GP6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosaetaceae;genus:Methanosaeta;species:Methanosaeta concilii; 7108.4342 238728738 ppk Phosphorus Polyphosphate synthesis NA Yersinia intermedia ATCC 29909 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia intermedia; 8266.9274 111145985 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. MT1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 188365.2546 188026109 arsc Metal Homeostasis Arsenic Detoxification Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 8985.9542 300390347 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 7277.4767 4609.576 223714376 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 10683.1374 312793780 mannanase Carbon Cycling Carbon degradation Hemicellulose Caldicellulosiruptor kristjanssonii 177R1B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family III. Incertae Sedis;genus:Caldicellulosiruptor;species:Caldicellulosiruptor kristjanssonii; 5814.8181 3013.794 2994.7974 214040586 ara Carbon Cycling Carbon degradation Hemicellulose Marinitoga piezophila KA3 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Marinitoga;species:Marinitoga piezophila; 6064.2677 56609602 amyA Carbon Cycling Carbon degradation Starch Cystobacter fuscus superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Cystobacteraceae;genus:Cystobacter; 5852.1439 1968.4666 3391.4305 4724.9104 91790464 pgk Carbon Cycling Carbon fixation Calvin cycle Polaromonas sp. JS666 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 4914.1424 375080263 narg Nitrogen Denitrification NA Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 16928.6815 269104332 chitinase Carbon Cycling Carbon degradation Chitin Photobacterium damselae subsp. damselae CIP 102761 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium damselae; 14962.6712 353198508 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus lactis 154 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus lactis; 4485.3076 44903457 tfdb Organic Remediation Aromatics Chlorinated aromatics Sphingobium herbicidovorans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingobium; 7797.2802 374814609 catechol_b Organic Remediation Aromatics Other aromatics Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 5327.5919 1769.6762 18620.3442 255722830 endochitinase Carbon Cycling Carbon degradation Chitin Candida tropicalis MYA-3404 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida tropicalis; 9728.9272 385666296 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Streptomyces tsukubaensis NRRL18488 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces tsukubaensis; 20065.109 114150712 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9705.0121 344337440 sqr Sulfur Sulfide Oxidation NA Thiocapsa marina 5811 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa;species:Thiocapsa marina; 5188.4967 3157588 nifh Nitrogen Nitrogen fixation NA unidentified nitrogen-fixing bacteria superkingdom:Bacteria; 37683.6034 283440468 xyla Carbon Cycling Carbon degradation Hemicellulose Pirellula staleyi DSM 6068 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Pirellula;species:Pirellula staleyi; 6957.7901 3334.8487 4328.5719 332592216 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 6740.3758 398114666 bphF1 Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 7004.0303 247542706 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 9689.8199 50084777 nhh Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 15982.3256 5502.5198 330432664 nrfa Nitrogen Dissimilatory N reduction NA Gallibacterium anatis UMN179 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Gallibacterium;species:Gallibacterium anatis; 6626.1584 148474706 nrfa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 7158.261 409188099 poba Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. 7D-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Comamonas; 36772.3936 332174648 vgb Virulence Antibiotic resistance Degradation Glaciecola sp. 4H-3-7+YE-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola; 5457.0559 256684996 rgl Carbon Cycling Carbon degradation Pectin Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 7801.2414 226719236 PRI Carbon Cycling Carbon fixation Calvin cycle Azotobacter vinelandii DJ superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Azotobacter;species:Azotobacter vinelandii; 3565.4562 76058261 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 21314.7942 300390396 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 2747.898 71145773 arylest Organic Remediation Aromatics Other aromatics Colwellia psychrerythraea 34H superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Colwelliaceae;genus:Colwellia;species:Colwellia psychrerythraea; 2358.9378 164598114 exoglucanase Carbon Cycling Carbon degradation Cellulose Clitocybe nuda superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Clitocybe; 1686.8744 149387436 cellobiase Carbon Cycling Carbon degradation Cellulose Scheffersomyces stipitis CBS 6054 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Scheffersomyces;species:Scheffersomyces stipitis; 1983.019 62549369 mannanase Carbon Cycling Carbon degradation Hemicellulose Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 4875.081 56565277 nifh Nitrogen Nitrogen fixation NA Herbaspirillum sp. B501 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herbaspirillum; 2093.8252 2551.2576 2900.1088 377555451 dsrB Sulfur sulfite reduction NA endosymbiont of Bathymodiolus sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 5180.42435 60100877 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1718.3216 1927.0335 257897914 endochitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecium Com15 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 2069.9223 75993829 arra Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 1627.9133 19069938 tfdb Organic Remediation Aromatics Chlorinated aromatics Novosphingobium lentum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 2089.7325 91685163 fccab Sulfur Sulfide Oxidation NA Rhodopseudomonas palustris BisB5 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 1972.0068 355530103 ara Carbon Cycling Carbon degradation Hemicellulose Paraprevotella clara YIT 11840 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Paraprevotella;species:Paraprevotella clara; 3534.2888 294495379 dsra Sulfur sulfite reduction NA Methanohalophilus mahii DSM 5219 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanohalophilus;species:Methanohalophilus mahii; 1662.4282 384371444 mult_ring_12DiOx Organic Remediation Aromatics Other aromatics bacterium enrichment culture clone pahAc6 superkingdom:Bacteria; 1707.2415 57020642 nrfa Nitrogen Dissimilatory N reduction NA Campylobacter coli RM2228 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter coli; 1754.5387 4138.9789 116013362 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1704.9577 119813563 arsc Metal Homeostasis Arsenic Detoxification Pseudomonas putida W619 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 12672.5261 156742881 pcs Carbon Cycling Carbon fixation 3-hydroxypropionate bicycle Roseiflexus castenholzii DSM 13941 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Roseiflexus;species:Roseiflexus castenholzii; 20212.1132 90970275 xylanase Carbon Cycling Carbon degradation Hemicellulose Verticillium dahliae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Glomerellales;family:Plectosphaerellaceae;genus:Verticilium; 2175.0873 238616169 cellobiase Carbon Cycling Carbon degradation Cellulose Moniliophthora perniciosa FA553 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Marasmiaceae;genus:Moniliophthora;species:Moniliophthora perniciosa; 1657.4687 71906540 mhpb Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Dechloromonas;species:Dechloromonas aromatica; 1566.5049 13898425 dsra Sulfur sulfite reduction NA uncultured phenanthrene mineralizing bacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1793.9079 114771181 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway alpha proteobacterium HTCC2255 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales; 1996.1331 354513939 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Lactobacillus curvatus CRL 705 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus curvatus; 1835.3008 374814619 linc Organic Remediation Pesticides related compound NA Treponema primitia ZAS-1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema primitia; 2128.7985 162454108 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Sorangium cellulosum 'So ce 56' superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Myxococcales;family:Polyangiaceae;genus:Sorangium;species:Sorangium cellulosum; 2872.826 2523.9792 86573174 beta_agarase Carbon Cycling Carbon degradation Agar Rhodopseudomonas palustris HaA2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2421.8158 86566918 amyA Carbon Cycling Carbon degradation Starch Frankia sp. CcI3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 1817.4462 346421717 badh Organic Remediation Aromatics Other aromatics Pseudomonas sp. 19-rlim superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 1999.704 328526093 heparinase Carbon Cycling Carbon degradation Heparin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 2027.2046 315590222 dehh109 Organic Remediation Chlorinated solvents NA Intrasporangium calvum DSM 43043 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Intrasporangiaceae;genus:Intrasporangium;species:Intrasporangium calvum; 4107.6389 377832118 ppx Phosphorus Polyphosphate degradation NA Lactobacillus mucosae LM1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus mucosae; 6381.8824 359343480 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 1838.3993 3618279 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 2143.6967 341834350 dsra Sulfur sulfite reduction NA uncultured prokaryote 2486.5239 4803.356 90104805 phn Organic Remediation Herbicides related compound NA Rhodopseudomonas palustris BisB18 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Rhodopseudomonas;species:Rhodopseudomonas palustris; 2099.6151 56475589 pchcf Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Aromatoleum;species:Aromatoleum aromaticum; 3583.5681 384068284 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Fibrella aestuarina BUZ 2 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrella;species:Fibrella aestuarina; 3113.3837 3096.1964 375149828 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Niastella koreensis GR20-10 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niastella;species:Niastella koreensis; 1708.3278 169851372 glx Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 1672.9707 225412295 badh Organic Remediation Aromatics Other aromatics Clostridium asparagiforme DSM 15981 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium asparagiforme; 2136.7187 358394214 linb Organic Remediation Pesticides related compound NA Trichoderma atroviride IMI 206040 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Trichoderma;species:Trichoderma atroviride; 1646.2971 260590925 mannanase Carbon Cycling Carbon degradation Hemicellulose Prevotella veroralis F0319 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella veroralis; 2402.8634 302514297 codh Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Veillonella atypica ACS-049-V-Sch6 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Veillonella;species:Veillonella atypica; 1828.6301 87280998 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2522.3491 83943681 SoxB Sulfur Sulfur Oxidation NA Sulfitobacter sp. EE-36 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sulfitobacter; 2017.1172 150020663 amyA Carbon Cycling Carbon degradation Starch Thermosipho melanesiensis BI429 superkingdom:Bacteria;phylum:Thermotogae;class:Thermotogae;order:Thermotogales;family:Thermotogaceae;genus:Thermosipho;species:Thermosipho melanesiensis; 2251.5189 291565708 amyA Carbon Cycling Carbon degradation Starch Arthrospira platensis NIES-39 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Arthrospira;species:Arthrospira platensis; 1796.6865 342794410 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. N418 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 1833.2385 326799971 mer Metal Homeostasis Mercury Detoxification Sphingobacterium sp. 21 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; 1831.1091 339021293 TIM Carbon Cycling Carbon fixation Calvin cycle Acetobacter tropicalis NBRC 101654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter tropicalis; 1906.6918 307735941 cysI Sulfur Other NA Methylobacter tundripaludum SV96 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae;genus:Methylobacter;species:Methylobacter tundripaludum; 2138.419 68135543 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1745.3442 27376122 SoxA Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium diazoefficiens; 3770.126 109626802 arsc Metal Homeostasis Arsenic Detoxification Haloquadratum walsbyi DSM 16790 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloquadratum;species:Haloquadratum walsbyi; 2518.4141 94983085 silicon_transporter Metal Homeostasis Silicon Transport NA 20013.4459 334132278 mer Metal Homeostasis Mercury Detoxification Methyloversatilis universalis FAM5 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Methyloversatilis;species:Methyloversatilis universalis; 1847.148 256035881 xyla Carbon Cycling Carbon degradation Hemicellulose Chitinophaga pinensis DSM 2588 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga;species:Chitinophaga pinensis; 2032.8182 385739423 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. WSM1253 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 1989.6182 89145108 ppk Phosphorus Polyphosphate synthesis NA Microbacterium terregens superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Microbacteriaceae;genus:Microbacterium; 2008.2561 15130900 phytase Phosphorus Phytic acid hydrolysis NA cf. Ceriporia sp. CBS 100231 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Coriolaceae;genus:Ceriporia; 1653.7898 54649960 alkb Organic Remediation Other Hydrocarbons NA Gordonia sp. TF6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia; 2887.8557 93455778 nifh Nitrogen Nitrogen fixation NA delta proteobacterium MLMS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 1964.1186 291456632 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium breve DSM 20213 = JCM 1192 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium breve; 2125.5653 268315594 mannanase Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 1882.0116 118567081 APS_AprB Sulfur adenylylsulfate reductase NA Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 5952.2899 301121026 actin_Stramenopiles Other Phylogenetic NA Phytophthora infestans T30-4 superkingdom:Eukaryota;order:Peronosporales;genus:Phytophthora;species:Phytophthora infestans; 2491.985 359383263 trza Organic Remediation Herbicides related compound NA Millerozyma farinosa CBS 7064 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Debaryomycetaceae;genus:Millerozyma;species:Millerozyma farinosa; 1993.8523 241870707 cpna Organic Remediation Other Hydrocarbons NA Weissella paramesenteroides ATCC 33313 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Weissella;species:Weissella paramesenteroides; 5864.4773 325983245 pchcf Organic Remediation Aromatics BTEX and related aromatics Nitrosomonas sp. AL212 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas; 2261.9157 192897622 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 2618.5663 210159193 amyA Carbon Cycling Carbon degradation Starch Collinsella stercoris DSM 13279 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Collinsella;species:Collinsella stercoris; 2574.9755 340617616 cda Carbon Cycling Carbon degradation Starch Zobellia galactanivorans superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zobellia; 2429.5749 256395679 endoglucanase Carbon Cycling Carbon degradation Cellulose Catenulispora acidiphila DSM 44928 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Catenulisporaceae;genus:Catenulispora;species:Catenulispora acidiphila; 1983.4569 313895494 gdh Nitrogen Ammonification NA Selenomonas sp. oral taxon 137 str. F0430 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas;species:Selenomonas sp. oral taxon 137; 1618.2425 166026721 cda Carbon Cycling Carbon degradation Starch Dorea formicigenerans ATCC 27755 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Dorea;species:Dorea formicigenerans; 2046.7088 270298368 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 1710.2077 2843.8578 88776291 amyA Carbon Cycling Carbon degradation Starch Reinekea sp. MED297 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;genus:Reinekea;species:Reinekea blandensis; 42175.1427 12919.9762 15558845 mg_chelatase Secondary metabolism Pigments Chlorophyll Chlamydomonas reinhardtii superkingdom:Eukaryota;kingdom:Viridiplantae;phylum:Chlorophyta;class:Chlorophyceae;order:Chlamydomonadales;family:Chlamydomonadaceae;genus:Chlamydomonas; 2428.5999 116013294 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1856.0789 1255516 nifh Nitrogen Nitrogen fixation NA unidentified bacterium superkingdom:Bacteria; 1715.599 383764754 amyA Carbon Cycling Carbon degradation Starch Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 1666.3335 22295079 narb Nitrogen Assimilatory N reduction NA Thermosynechococcus elongatus BP-1 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Thermosynechococcus;species:Thermosynechococcus elongatus; 2190.5135 16580695 mnp Carbon Cycling Carbon degradation Lignin Phlebia radiata superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phlebia; 1783.4685 386594.438 33334341 nifh Nitrogen Nitrogen fixation NA Leptospirillum ferrooxidans superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 16679.234 146327858 phenol_oxidase Carbon Cycling Carbon degradation Lignin Lentinus tigrinus superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Lentinaceae;genus:Lentinus; 2063.3903 253778122 amyA Carbon Cycling Carbon degradation Starch Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 2524.2187 223886627 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured fungus superkingdom:Eukaryota;kingdom:Fungi; 6780.1034 112462513 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 1812.7143 329964928 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides fluxus YIT 12057 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides fluxus; 2141.7646 3628.241 386742275 arsc Metal Homeostasis Arsenic Detoxification Providencia stuartii MRSN 2154 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 9276.8558 151302308 aps_apra Sulfur adenylylsulfate reductase NA sulfate-reducing bacterium QLNR1 superkingdom:Bacteria; 1898.9307 25045822 cpnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. T3G6 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 21836.2481 328542528 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Polymorphum gilvum SL003B-26A1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;species:Polymorphum gilvum; 2126.7964 3425.5579 3865.1742 281298425 ppk Phosphorus Polyphosphate synthesis NA Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 4842.9971 139002666 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2051.3632 296142042 nosz Nitrogen Denitrification NA Alcaligenes sp. enrichment culture clone DBTE superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Alcaligenes; 2034.4792 2700.095 6646.7106 342822194 atzb Organic Remediation Herbicides related compound NA Vibrio tubiashii ATCC 19109 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio tubiashii; 2146.5135 149228937 amyA Carbon Cycling Carbon degradation Starch Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 2180.1329 323494188 ppx Phosphorus Polyphosphate degradation NA Vibrio brasiliensis LMG 20546 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio brasiliensis; 1671.3122 17987.2422 106886138 dsra Sulfur sulfite reduction NA Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 10152.1582 162955540 chnb Organic Remediation Other Hydrocarbons NA Renibacterium salmoninarum ATCC 33209 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Renibacterium;species:Renibacterium salmoninarum; 2700.6615 126732891 exaa(moxf) Organic Remediation Chlorinated solvents NA Sagittula stellata E-37 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Sagittula;species:Sagittula stellata; 2276.5214 40253107 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3003.4802 260851516 amyA Carbon Cycling Carbon degradation Starch Prevotella tannerae ATCC 51259 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella tannerae; 2194.7746 66967807 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 1949.2646 238799046 alginase Carbon Cycling Carbon degradation Alginate Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 1634.3218 373494510 nifh Nitrogen Nitrogen fixation NA Eubacterium infirmum F0142 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XIII. Incertae Sedis;species:[Eubacterium] infirmum; 2134.8193 90414449 cysJ Sulfur Reduction NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 4117.6866 119487901 urec Nitrogen Ammonification NA Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 1543.9102 302371643 amyA Carbon Cycling Carbon degradation Starch Rhizopus oryzae superkingdom:Eukaryota;kingdom:Fungi;order:Mucorales;family:Mucoraceae;genus:Rhizopus; 3934.1576 221213054 poba Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans CGD1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia multivorans; 2020.5865 3234.7899 239833421 TIM Carbon Cycling Carbon fixation Calvin cycle Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 1795.9572 40736909 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3248.5736 384227848 cysI Sulfur Other NA Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; 2093.2768 333376495 terc Metal Homeostasis Tellurium Detoxification Kingella kingae ATCC 23330 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Neisseriales;family:Neisseriaceae;genus:Kingella;species:Kingella kingae; 2112.0269 2154.8646 4781.9901 359251080 arsc Metal Homeostasis Arsenic Detoxification Mesorhizobium alhagi CCNWXJ12-2 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Phyllobacteriaceae;genus:Mesorhizobium;species:Mesorhizobium alhagi; 1601.1121 125975619 RgaE Carbon Cycling Carbon degradation Pectin Clostridium thermocellum ATCC 27405 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 2238.5302 160940390 atza Organic Remediation Herbicides related compound NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 1749.9095 373888563 poba Organic Remediation Aromatics Aromatic carboxylic acid Mucilaginibacter paludis DSM 18603 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; 1909.7067 254393095 chitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 2707.5835 112802744 oorA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 2526.0729 296181332 urec Nitrogen Ammonification NA Segniliparus rotundus DSM 44985 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Segniliparaceae;genus:Segniliparus;species:Segniliparus rotundus; 2017.8047 197298188 ara Carbon Cycling Carbon degradation Hemicellulose Ruminococcus lactaris ATCC 29176 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus lactaris; 2592.5378 315013786 cysJ Sulfur Reduction NA Pseudoalteromonas sp. SM9913 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 1681.8407 386813112 hao Nitrogen Nitrification NA planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 1889.3383 167749152 mannanase Carbon Cycling Carbon degradation Hemicellulose Eubacterium siraeum DSM 15702 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Eubacteriaceae;genus:Eubacterium;species:Eubacterium siraeum; 1766.2849 218676424 aoxb Metal Homeostasis Arsenic Detoxification Vibrio splendidus LGP32 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 1741.8088 375129839 FBPase Carbon Cycling Carbon fixation Calvin cycle Vibrio furnissii NCTC 11218 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio furnissii; 2923.5787 148243588 narb Nitrogen Assimilatory N reduction NA Synechococcus sp. RCC307 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 6166.2155 385702529 amyA Carbon Cycling Carbon degradation Starch Streptococcus infantis ATCC 700779 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus infantis; 2446.7401 392588582 chnb Organic Remediation Other Hydrocarbons NA Coniophora puteana RWD-64-598 SS2 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Boletales;family:Coniophoraceae;genus:Coniophora;species:Coniophora puteana; 1664.8141 2669.3618 148981002 ppx Phosphorus Polyphosphate degradation NA Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 1819.3596 260613131 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio metschnikovii CIP 69.14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio metschnikovii; 2965.155 10441060 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotroph 'type 10' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Methylococcales;family:Methylococcaceae; 2102.7159 307095228 sqr Sulfur Sulfide Oxidation NA uncultured bacterium superkingdom:Bacteria; 12125.4368 1113082 nira Nitrogen Assimilatory N reduction NA Leptolyngbya boryana superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Leptolyngbya; 2313.8911 6048988 xylg Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 1558.4576 157681269 cellobiase Carbon Cycling Carbon degradation Cellulose Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 3747.6471 289627150 proO Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. aesculi str. NCPPB 3681 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 2432.7867 186477878 one_ring_23diox Organic Remediation Aromatics Other aromatics Rhodococcus sp. HA01 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; 2119.3152 332982539 amyA Carbon Cycling Carbon degradation Starch Mahella australiensis 50-1 BON superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacterales Family IV. Incertae Sedis;genus:Mahella;species:Mahella australiensis; 2481.5806 333937501 poba Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium sp. PP1Y superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Novosphingobium; 2991.0322 83631422 amyA Carbon Cycling Carbon degradation Starch Hahella chejuensis KCTC 2396 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Hahellaceae;genus:Hahella;species:Hahella chejuensis; 3732.9161 156081476 alkb Organic Remediation Other Hydrocarbons NA Geobacillus toebii superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Geobacillus; 1952.9706 374620076 TIM Carbon Cycling Carbon fixation Calvin cycle gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 1817.0186 169849562 chitin_deacetylase_fungi Carbon Cycling Carbon degradation Chitin Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 2659.3863 15605773 narb Nitrogen Assimilatory N reduction NA Aquifex aeolicus VF5 superkingdom:Bacteria;phylum:Aquificae;class:Aquificae;order:Aquificales;family:Aquificaceae;genus:Aquifex;species:Aquifex aeolicus; 8829.3081 192361416 pula Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 2053.5391 139003197 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 2118.9215 253689726 cysI Sulfur Other NA Pectobacterium carotovorum subsp. carotovorum PC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium carotovorum; 1880.1617 374708744 ppx Phosphorus Polyphosphate degradation NA Sporolactobacillus inulinus CASD superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Sporolactobacillaceae;genus:Sporolactobacillus;species:Sporolactobacillus inulinus; 3485.7216 3928776 chitinase Carbon Cycling Carbon degradation Chitin Pseudoalteromonas sp. S9 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas; 1658.5626 5229.9934 291423618 xyla Carbon Cycling Carbon degradation Hemicellulose Serratia odorifera DSM 4582 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Serratia;species:Serratia odorifera; 1711.8974 171678058 rgl Carbon Cycling Carbon degradation Pectin Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 1728.9336 75701375 amyA Carbon Cycling Carbon degradation Starch Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 2113.608 383191510 chitinase Carbon Cycling Carbon degradation Chitin Rahnella aquatilis CIP 78.65 = ATCC 33071 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Rahnella;species:Rahnella aquatilis; 2623.7103 27349261 soxY Sulfur Sulfur Oxidation NA Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; 5035.8386 258567470 bph Organic Remediation Aromatics Aromatic carboxylic acid Uncinocarpus reesii 1704 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Onygenaceae;genus:Uncinocarpus;species:Uncinocarpus reesii; 2065.7262 2953.2965 261404155 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus sp. Y412MC10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 1981.1282 329311912 TIM Carbon Cycling Carbon fixation Calvin cycle Alicycliphilus denitrificans K601 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Alicycliphilus;species:Alicycliphilus denitrificans; 2534.5683 10236.7958 269979683 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured rumen bacterium superkingdom:Bacteria; 2917.4182 197706742 exochitinase Carbon Cycling Carbon degradation Chitin Streptomyces clavuligerus ATCC 27064 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces clavuligerus; 1944.625 5902970 nifh Nitrogen Nitrogen fixation NA Vibrio natriegens superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 5914.5467 383765054 catechol_b Organic Remediation Aromatics Other aromatics Caldilinea aerophila DSM 14535 = NBRC 104270 superkingdom:Bacteria;phylum:Chloroflexi;class:Caldilineae;order:Caldilineales;family:Caldilineaceae;genus:Caldilinea;species:Caldilinea aerophila; 3368.35 71481901 soxY Sulfur Sulfur Oxidation NA Prosthecochloris vibrioformis DSM 265 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium phaeovibrioides; 2286.9476 3006.6031 212539289 glx Carbon Cycling Carbon degradation Lignin Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 2984.8111 8629.7159 373233497 nosz Nitrogen Denitrification NA Niabella soli DSM 19437 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;genus:Niabella;species:Niabella soli; 1982.6648 258556572 chitinase Carbon Cycling Carbon degradation Chitin Nakamurella multipartita DSM 44233 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nakamurellaceae;genus:Nakamurella;species:Nakamurella multipartita; 2705.379 315482668 ppk Phosphorus Polyphosphate synthesis NA Enterococcus italicus DSM 15952 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus italicus; 1975.0087 119188993 amyA Carbon Cycling Carbon degradation Starch Coccidioides immitis RS superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Coccidioides;species:Coccidioides immitis; 1920.0841 5188.3149 294083834 xyla Carbon Cycling Carbon degradation Hemicellulose Candidatus Puniceispirillum marinum IMCC1322 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;genus:Candidatus Puniceispirillum;species:Candidatus Puniceispirillum marinum; 2501.474 407307299 atzb Organic Remediation Herbicides related compound NA Nocardia brasiliensis ATCC 700358 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Nocardia;species:Nocardia brasiliensis; 4796.2679 5857.2758 229590540 mhpa Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens SBW25 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 6322.8412 330888376 nitro Organic Remediation Others NA Pseudomonas syringae pv. mori str. 301020 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 1585.8417 34017146 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 3138.2441 109900336 Sir Sulfur sulfite reduction NA Pseudoalteromonas atlantica T6c superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas atlantica; 1866.014 332691555 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2407.6134 7377.0983 407803212 chnb Organic Remediation Other Hydrocarbons NA Alcanivorax sp. W11-5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax pacificus; 2284.8715 261416748 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Fibrobacter succinogenes subsp. succinogenes S85 superkingdom:Bacteria;phylum:Fibrobacteres;class:Fibrobacteria;order:Fibrobacterales;family:Fibrobacteraceae;genus:Fibrobacter;species:Fibrobacter succinogenes; 1842.8915 19915517 amyA Carbon Cycling Carbon degradation Starch Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 4916.7791 37903467 amyA Carbon Cycling Carbon degradation Starch Pantoea dispersa superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 1735.6586 8581.853 242121120 nrfa Nitrogen Dissimilatory N reduction NA Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 1888.4825 2207.2595 348596762 chitinase Carbon Cycling Carbon degradation Chitin Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 1992.7352 188026458 gdh Nitrogen Ammonification NA Providencia stuartii ATCC 25827 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Providencia;species:Providencia stuartii; 1785.7112 91200769 amyA Carbon Cycling Carbon degradation Starch Candidatus Kuenenia stuttgartiensis superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Candidatus Brocadiales;family:Candidatus Brocadiaceae;genus:Candidatus Kuenenia; 1902.5067 33320480 dsra Sulfur sulfite reduction NA sulfate-reducing bacterium oXyS1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 2786.1657 199653538 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2202.7119 110006637 amyA Carbon Cycling Carbon degradation Starch Fusicoccum sp. BCC4124 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Botryosphaeriales;family:Botryosphaeriaceae;genus:Fusicoccum; 1850.3832 158332310 nhh Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; 3216.8983 5007.0938 229381926 cellobiase Carbon Cycling Carbon degradation Cellulose Coprobacillus sp. D7 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Coprobacillus; 5934.2852 371642736 urec Nitrogen Ammonification NA Myroides odoratimimus CCUG 12901 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Myroides;species:Myroides odoratimimus; 2733.0453 294971398 amyA Carbon Cycling Carbon degradation Starch Brevibacterium mcbrellneri ATCC 49030 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Brevibacteriaceae;genus:Brevibacterium;species:Brevibacterium mcbrellneri; 6397.4858 25900678 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured bacterium superkingdom:Bacteria; 5933.578 33567315 hcaacd Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella bronchiseptica; 4128.7818 323342953 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Erysipelothrix rhusiopathiae ATCC 19414 superkingdom:Bacteria;phylum:Firmicutes;class:Erysipelotrichia;order:Erysipelotrichales;family:Erysipelotrichaceae;genus:Erysipelothrix;species:Erysipelothrix rhusiopathiae; 4500.5987 111057902 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Phaeosphaeria nodorum SN15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Phaeosphaeriaceae;genus:Parastagonospora;species:Parastagonospora nodorum; 6353.2424 4454.4887 140845221 pcpe Organic Remediation Herbicides related compound NA Corynebacterium glutamicum R superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium glutamicum; 16842.6471 375309355 xylanase Carbon Cycling Carbon degradation Hemicellulose Paenibacillus sp. Aloe-11 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 2953.016 83318860 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4104.453 75910667 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 2819.6106 148474752 napa Nitrogen Dissimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 3278.5839 171691448 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 3188.9166 29160343 exoglucanase Carbon Cycling Carbon degradation Cellulose Corynascus heterothallicus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Thielavia; 6323.786 167775360 cysJ Sulfur Reduction NA Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira biflexa; 2885.0072 390519511 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. CL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 4139.7412 304327814 cellobiase Carbon Cycling Carbon degradation Cellulose Pediococcus acidilactici DSM 20284 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus acidilactici; 3619.0413 359458002 ccmM Carbon Cycling Carbon fixation Bacterial Microcompartments Acaryochloris sp. CCMEE 5410 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Acaryochloris; 9126.9032 146220121 arylest Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 7318.195 373940783 fccab Sulfur Sulfide Oxidation NA Ectothiorhodospira sp. PHS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Ectothiorhodospira; 3940.6927 156862018 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 4210.5835 299528393 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 2443.5604 4396.448 7197 actin_amoebozoa Other Phylogenetic NA Dictyostelium discoideum superkingdom:Eukaryota;order:Dictyosteliida;genus:Dictyostelium; 4972.6028 119487584 PRI Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 4711.295 3330.2321 60100871 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2723.6873 22596900 ppk Phosphorus Polyphosphate synthesis NA Rhodocyclus tenuis superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Rhodocyclales;family:Rhodocyclaceae;genus:Rhodocyclus; 10536.8964 32327.147 398346616 alkb Organic Remediation Other Hydrocarbons NA Leptospira broomii str. 5399 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira broomii; 3192.2616 381340261 alkj Organic Remediation Other Hydrocarbons NA Marinobacter hydrocarbonoclasticus ATCC 49840 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 6645.8877 327439352 cysJ Sulfur Reduction NA Solibacillus silvestris StLB046 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Planococcaceae;genus:Solibacillus;species:Solibacillus silvestris; 2499.429 333977802 arsc Metal Homeostasis Arsenic Detoxification Desulfotomaculum kuznetsovii DSM 6115 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfotomaculum;species:Desulfotomaculum kuznetsovii; 7470.9732 357586828 tehb Metal Homeostasis Tellurium Detoxification Streptococcus urinalis 2285-97 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus urinalis; 3016.0529 347580878 ppx Phosphorus Polyphosphate degradation NA Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 3328.0016 379649168 amyA Carbon Cycling Carbon degradation Starch Flavobacterium frigoris PS1 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium frigoris; 4904.4401 114308196 cysI Sulfur Other NA Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 2726.7468 4571.775 119395290 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 2926.328 11882.7594 336008337 cda Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 1_4_56FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 3135.6252 334144640 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Thioalkalimicrobium cyclicum ALM1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Thioalkalimicrobium;species:Thioalkalimicrobium cyclicum; 8895.5104 386287407 bphd Organic Remediation Aromatics Polycyclic aromatics gamma proteobacterium BDW918 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 4512.1572 384261543 ben_bcla virulence NA NA Rhodospirillum photometricum DSM 122 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum photometricum; 20294.735 238868536 amyA Carbon Cycling Carbon degradation Starch Edwardsiella ictaluri 93-146 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Edwardsiella;species:Edwardsiella ictaluri; 2433.9726 347523816 4hbcd_dic4hb Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrolobus fumarii 1A superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Desulfurococcales;family:Pyrodictiaceae;genus:Pyrolobus;species:Pyrolobus fumarii; 15078.6741 342813698 ppx Phosphorus Polyphosphate degradation NA Vibrio orientalis CIP 102891 = ATCC 33934 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio orientalis; 3569.8396 116066581 PRI Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 2821.4518 113939708 xylanase Carbon Cycling Carbon degradation Hemicellulose Herpetosiphon aurantiacus ATCC 23779 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Herpetosiphonales;family:Herpetosiphonaceae;genus:Herpetosiphon;species:Herpetosiphon aurantiacus; 2684.4358 169782674 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 2836.1212 299772660 Bacteriorhodopsin Secondary metabolism Pigments Rhodopsin uncultured bacterium superkingdom:Bacteria; 2820.5324 50982435 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 35726.2231 224536266 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides cellulosilyticus DSM 14838 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides cellulosilyticus; 3193.9443 157678996 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 4134.9507 7219.8495 337746268 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus mucilaginosus KNP414 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 5615.379 3263.2304 303303313 pmoa Carbon Cycling Methane Methane oxidation uncultured methanotrophic bacterium superkingdom:Bacteria; 5113.6753 359733175 chnb Organic Remediation Other Hydrocarbons NA Rhodococcus pyridinivorans AK37 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus pyridinivorans; 3625.5655 332830174 amyA Carbon Cycling Carbon degradation Starch Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 3646.512 256372541 amyA Carbon Cycling Carbon degradation Starch Acidimicrobium ferrooxidans DSM 10331 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Acidimicrobiales;family:Acidimicrobiaceae;genus:Acidimicrobium;species:Acidimicrobium ferrooxidans; 16735.6051 90591218 urec Nitrogen Ammonification NA Flavobacterium johnsoniae UW101 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Flavobacterium;species:Flavobacterium johnsoniae; 3040.1978 251770820 glucoamylase Carbon Cycling Carbon degradation Starch Leptospirillum ferrodiazotrophum superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 2728.0484 84377220 chitinase Carbon Cycling Carbon degradation Chitin Vibrio splendidus 12B01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio splendidus; 7831.4099 322372765 amyA Carbon Cycling Carbon degradation Starch Streptococcus sp. C150 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus; 3411.9969 167533800 gdh Nitrogen Ammonification NA Monosiga brevicollis MX1 superkingdom:Eukaryota;order:Choanoflagellida;family:Codonosigidae;genus:Monosiga;species:Monosiga brevicollis; 9209.9667 219939168 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2980.8117 39998044 arsc Metal Homeostasis Arsenic Detoxification Geobacter sulfurreducens PCA superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter sulfurreducens; 3440.596 15722310 merg Metal Homeostasis Mercury Transport Plasmid pSB102 3031.2966 149908488 ppx Phosphorus Polyphosphate degradation NA Moritella sp. PE36 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Moritellaceae;genus:Moritella; 2840.5691 328957524 xylanase Carbon Cycling Carbon degradation Hemicellulose Carnobacterium sp. 17-4 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Carnobacteriaceae;genus:Carnobacterium; 2728.6213 116104636 amyA Carbon Cycling Carbon degradation Starch Lactobacillus casei ATCC 334 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus casei; 4647.4764 156109765 rgl Carbon Cycling Carbon degradation Pectin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 3436.5161 6910981 mnp Carbon Cycling Carbon degradation Lignin Dichomitus squalens superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus; 6782.7311 133737563 gdh Nitrogen Ammonification NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9274.2005 13186.0207 359344865 B_lactamase_A Virulence Antibiotic resistance Degradation Pseudovibrio sp. FO-BEG1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Pseudovibrio; 55035.0036 257067089 amyA Carbon Cycling Carbon degradation Starch Anaerococcus prevotii DSM 20548 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Anaerococcus;species:Anaerococcus prevotii; 4542.6387 393778086 arsc Metal Homeostasis Arsenic Detoxification Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 7063.5665 219762694 bphd Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 3465.7307 157960659 nrfa Nitrogen Dissimilatory N reduction NA Shewanella pealeana ATCC 700345 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella;species:Shewanella pealeana; 3561.7977 37954342 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2502.3593 12539417 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. NK8 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 21563.0612 375139402 bphc Organic Remediation Aromatics Polycyclic aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 3316.853 344212121 alkk Organic Remediation Others NA Haloarcula hispanica ATCC 33960 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloarcula;species:Haloarcula hispanica; 2733.0138 164455782 chitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 4129.4676 344201666 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Muricauda ruestringensis DSM 13258 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Muricauda;species:Muricauda ruestringensis; 8755.5847 50838773 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3325.2545 190687891 xylanase Carbon Cycling Carbon degradation Hemicellulose Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 3703.5929 238787717 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Yersinia frederiksenii ATCC 33641 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia frederiksenii; 4527.061 133738240 ppk Phosphorus Polyphosphate synthesis NA Herminiimonas arsenicoxydans superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Oxalobacteraceae;genus:Herminiimonas; 9940.0048 312196158 amyA Carbon Cycling Carbon degradation Starch Frankia sp. EuI1c superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; 2630.8764 315417176 RgaE Carbon Cycling Carbon degradation Pectin Asticcacaulis excentricus CB 48 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Asticcacaulis;species:Asticcacaulis excentricus; 59216.6752 218761790 hao Nitrogen Nitrification NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 3406.8067 72496231 Sir Sulfur sulfite reduction NA Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus saprophyticus; 31828.9217 337281810 pula Carbon Cycling Carbon degradation Starch Streptococcus parasanguinis ATCC 15912 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus parasanguinis; 5007.8823 124488299 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4219.7531 254486295 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. GAI101 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4292.2207 409392758 scnabc Organic Remediation Others NA Gordonia rubripertincta NBRC 101908 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Gordoniaceae;genus:Gordonia;species:Gordonia rubripertincta; 3403.8304 115399910 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 3931.2318 112462455 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3998.5424 66801851 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 4386.4344 375089573 amyA Carbon Cycling Carbon degradation Starch Facklamia languida CCUG 37842 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Aerococcaceae;genus:Facklamia;species:Facklamia languida; 3141.4425 247543671 rgl Carbon Cycling Carbon degradation Pectin Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 11276.2511 373097586 pcag Organic Remediation Aromatics Other aromatics Cupriavidus basilensis OR16 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus basilensis; 3199.0555 78167440 ppx Phosphorus Polyphosphate degradation NA Pelodictyon luteolum DSM 273 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Pelodictyon;species:Pelodictyon luteolum; 6701.1402 75703982 nifh Nitrogen Nitrogen fixation NA Anabaena variabilis ATCC 29413 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Anabaena;species:Anabaena variabilis; 3433.9625 99030447 ppk Phosphorus Polyphosphate synthesis NA uncultured bacterium superkingdom:Bacteria; 12120.8487 189210423 pme_Cdeg Carbon Cycling Carbon degradation Pectin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 2983.0569 261835924 trze Organic Remediation Herbicides related compound NA Halothiobacillus neapolitanus c2 2808.3106 20905279 glucoamylase Carbon Cycling Carbon degradation Starch Methanosarcina mazei Go1 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina mazei; 4087.4907 211905807 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 5540.4024 295673792 cellobiase Carbon Cycling Carbon degradation Cellulose Paracoccidioides brasiliensis Pb01 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 2972.5208 254351263 protease_serine_fungi Carbon Cycling Carbon degradation protein Metarhizium album superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Metarhizium; 5312.6984 213647136 amyA Carbon Cycling Carbon degradation Starch Salmonella enterica subsp. enterica serovar Typhi str. J185 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Salmonella;species:Salmonella enterica; 4042.5028 158319513 dsra Sulfur sulfite reduction NA Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 5069.5729 308265527 mer Metal Homeostasis Mercury Detoxification Caenorhabditis remanei superkingdom:Eukaryota;kingdom:Metazoa;phylum:Nematoda;class:Chromadorea;order:Rhabditida;family:Rhabditidae;genus:Caenorhabditis; 3366.7796 343496918 FBP_aldolase Carbon Cycling Carbon fixation Calvin cycle Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 2984.6274 343805448 soxY Sulfur Sulfur Oxidation NA Marichromatium purpuratum 984 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Marichromatium;species:Marichromatium purpuratum; 3069.6378 269830472 endochitinase Carbon Cycling Carbon degradation Chitin Vibrio alginolyticus 40B superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 9364.3938 374413721 dsrB Sulfur sulfite reduction NA uncultured prokaryote 5991.8812 392846672 terc Metal Homeostasis Tellurium Detoxification Rhizobium leguminosarum bv. viciae USDA 2370 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium leguminosarum; 4591.7973 328905834 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Propionibacterium humerusii P08 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium humerusii; 10479.9578 70988703 amyA Carbon Cycling Carbon degradation Starch Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 28538.9265 289707365 hzo Nitrogen Anammox NA uncultured anaerobic ammonium-oxidizing bacterium superkingdom:Bacteria; 11104.2663 118567058 tktA Carbon Cycling Carbon fixation Calvin cycle Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:Candidatus Ruthia magnifica; 3654.6105 302685848 Sir Sulfur sulfite reduction NA Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 8777.4154 78102219 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 9765.5863 157682173 rgh Carbon Cycling Carbon degradation Pectin Bacillus pumilus SAFR-032 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus pumilus; 3489.2986 154362254 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway uncultured microorganism 2711.4829 48153 mer Metal Homeostasis Mercury Detoxification Acidithiobacillus ferrooxidans superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Acidithiobacillales;family:Acidithiobacillaceae;genus:Acidithiobacillus; 4962.3607 119455211 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 4448.0791 149182592 pula Carbon Cycling Carbon degradation Starch Bacillus sp. SG-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; 3431.3772 309313377 lactase_fungi Carbon Cycling Carbon degradation Lactose Puccinia graminis f. sp. tritici CRL 75-36-700-3 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Pucciniales;family:Pucciniaceae;genus:Puccinia;species:Puccinia graminis; 3038.4528 323364492 nifh Nitrogen Nitrogen fixation NA uncultured microorganism 21001.388 401169890 xylj Organic Remediation Aromatics BTEX and related aromatics Bacillus cereus HuA4-10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 61028.4046 77378775 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 14641.0164 169186127 linb Organic Remediation Pesticides related compound NA Paenibacillus sp. JDR-2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 3426.7338 111073759 endochitinase Carbon Cycling Carbon degradation Chitin uncultured bacterium superkingdom:Bacteria; 8438.7946 66801895 narg Nitrogen Denitrification NA unidentified bacterium superkingdom:Bacteria; 11579.9147 323464081 ppk Phosphorus Polyphosphate synthesis NA Staphylococcus pseudintermedius ED99 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Staphylococcaceae;genus:Staphylococcus;species:Staphylococcus pseudintermedius; 4066.7493 164662849 phospholipase_D_fungi Carbon Cycling Carbon degradation Phospholipids Malassezia globosa CBS 7966 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Exobasidiomycetes;order:Malasseziales;family:Malasseziaceae;genus:Malassezia;species:Malassezia globosa; 3826.331 334733970 pula Carbon Cycling Carbon degradation Starch Enterobacter aerogenes KCTC 2190 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter aerogenes; 4099.9066 49036626 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4523.5356 46111883 phospholipase_B_fungi virulence degradation NA Gibberella zeae PH-1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Nectriaceae;genus:Gibberella;species:Gibberella zeae; 2825.808 21672958 sqr Sulfur Sulfide Oxidation NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 33119.6615 261857122 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4383.3718 12852.2023 229611219 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3604.0877 269833274 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Vibrio harveyi 1DA3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio harveyi; 35581.6612 218225215 arsc Metal Homeostasis Arsenic Detoxification Parabacteroides johnsonii DSM 18315 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides johnsonii; 3180.7841 219550316 chitinase Carbon Cycling Carbon degradation Chitin Vibrio parahaemolyticus 16 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 16697.7146 325157898 RgaE Carbon Cycling Carbon degradation Pectin Enterococcus casseliflavus ATCC 12755 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus casseliflavus; 4062.8561 297585382 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Bacillus selenitireducens MLS10 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus selenitireducens; 7025.5871 117188503 nitrate_reductase Nitrogen N Assimilation NA uncultured eukaryote superkingdom:Eukaryota; 4256.4779 226837585 cysJ Sulfur Reduction NA Acinetobacter sp. ATCC 27244 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 3600.3166 402833331 bphF1 Organic Remediation Aromatics Polycyclic aromatics Selenomonas sp. CM52 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Selenomonas; 14902.429 91708474 ppx Phosphorus Polyphosphate degradation NA Methylobacillus flagellatus KT superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylobacillus;species:Methylobacillus flagellatus; 3261.7371 68476693 phospholipase_B_fungi virulence degradation NA Candida albicans SC5314 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Candida;species:Candida albicans; 206144.0399 114326976 pgk Carbon Cycling Carbon fixation Calvin cycle Granulibacter bethesdensis CGDNIH1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Granulibacter;species:Granulibacter bethesdensis; 5245.9772 378573301 cda Carbon Cycling Carbon degradation Starch Paenibacillus mucilaginosus 3016 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus mucilaginosus; 2902.1316 106765782 tehb Metal Homeostasis Tellurium Detoxification Clostridium phytofermentans ISDg superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium phytofermentans; 8705.2334 333398529 amyA Carbon Cycling Carbon degradation Starch Leuconostoc gelidum KCTC 3527 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Leuconostoc;species:Leuconostoc gelidum; 3482.4416 116064701 ppx Phosphorus Polyphosphate degradation NA Synechococcus sp. BL107 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 15955.363 289423195 amyA Carbon Cycling Carbon degradation Starch Peptostreptococcus anaerobius 653-L superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptostreptococcaceae;genus:Peptostreptococcus;species:Peptostreptococcus anaerobius; 3666.2932 375082161 amyA Carbon Cycling Carbon degradation Starch Thermococcus litoralis DSM 5473 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus;species:Thermococcus litoralis; 3121.7966 20090069 nifh Nitrogen Nitrogen fixation NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 7492.7242 66964726 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Arthrobacter sp. FB24 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; 3029.7645 149140364 xylanase Carbon Cycling Carbon degradation Hemicellulose Lentisphaera araneosa HTCC2155 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;order:Lentisphaerales;family:Lentisphaeraceae;genus:Lentisphaera;species:Lentisphaera araneosa; 4582.9764 344226355 arsm Metal Homeostasis Arsenic Detoxification endosymbiont of Riftia pachyptila (vent Ph05) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;species:endosymbiont of Riftia pachyptila; 6059.4502 338739321 FBPase Carbon Cycling Carbon fixation Calvin cycle Hyphomicrobium sp. MC1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Hyphomicrobiaceae;genus:Hyphomicrobium; 16026.2773 153793101 frdA_rTCA Carbon Cycling Carbon fixation Reductive tricarboxylic acid cycle Campylobacter curvus 525.92 superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Campylobacteraceae;genus:Campylobacter;species:Campylobacter curvus; 3862.6651 88805610 terc Metal Homeostasis Tellurium Detoxification Robiginitalea biformata HTCC2501 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Robiginitalea;species:Robiginitalea biformata; 6813.9164 306487933 nirs Nitrogen Denitrification NA uncultured organism 83026.0269 387129347 cysI Sulfur Other NA Methylophaga sp. JAM7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Piscirickettsiaceae;genus:Methylophaga; 7649.8012 342316458 aoxb Metal Homeostasis Arsenic Detoxification uncultured bacterium superkingdom:Bacteria; 3755.8663 219994846 aps_apra Sulfur adenylylsulfate reductase NA Thioalkalivibrio sp. HL-EbGR7 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Thioalkalivibrio;species:Thioalkalivibrio sulfidophilus; 8550.3234 254451458 vana Carbon Cycling Carbon degradation Vanillin/Lignin Octadecabacter antarcticus 238 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Octadecabacter;species:Octadecabacter antarcticus; 8005.6585 343392657 nirk Nitrogen Denitrification NA Haemophilus pittmaniae HK 85 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pasteurellales;family:Pasteurellaceae;genus:Haemophilus;species:Haemophilus pittmaniae; 3409.1355 255524319 amyA Carbon Cycling Carbon degradation Starch Clostridium carboxidivorans P7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium carboxidivorans; 8432.8294 94449466 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 17043.7952 145601271 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Magnaporthe oryzae 70-15 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Magnaporthales;family:Magnaporthaceae;genus:Magnaporthe;species:Magnaporthe oryzae; 16917.6807 239797999 mer Metal Homeostasis Mercury Detoxification Desulfovibrio magneticus RS-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio magneticus; 12863.5196 261338726 amyA Carbon Cycling Carbon degradation Starch Bifidobacterium gallicum DSM 20093 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Bifidobacteriales;family:Bifidobacteriaceae;genus:Bifidobacterium;species:Bifidobacterium gallicum; 26575.4713 374325198 endoglucanase Carbon Cycling Carbon degradation Cellulose Paenibacillus terrae HPL-003 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus terrae; 4056.4843 91226172 terc Metal Homeostasis Tellurium Detoxification Vibrio alginolyticus 12G01 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio alginolyticus; 20199.6111 26985958 SoxB Sulfur Sulfur Oxidation NA Halothiobacillus neapolitanus superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Halothiobacillaceae;genus:Halothiobacillus; 40756.1359 332141310 amyA Carbon Cycling Carbon degradation Starch Alteromonas macleodii str. 'Deep ecotype' superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Alteromonas;species:Alteromonas macleodii; 5880.4423 189196400 chnb Organic Remediation Other Hydrocarbons NA Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 15484.3628 156861194 endochitinase Carbon Cycling Carbon degradation Chitin Bacteroides uniformis ATCC 8492 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides uniformis; 3728.3274 152068919 arylest Organic Remediation Aromatics Other aromatics Beggiatoa sp. PS superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Thiotrichales;family:Thiotrichaceae;genus:Beggiatoa; 3546.2469 7483.7707 190687534 glucoamylase Carbon Cycling Carbon degradation Starch Cellvibrio japonicus Ueda107 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Cellvibrio;species:Cellvibrio japonicus; 3055.4472 170093716 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Laccaria bicolor S238N-H82 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Tricholomataceae;genus:Laccaria;species:Laccaria bicolor; 9021.6563 70607472 mdlc Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 3874.1286 145566972 phenol_oxidase Carbon Cycling Carbon degradation Lignin Coprinopsis cinerea superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis; 3450.8566 161380684 atzb Organic Remediation Herbicides related compound NA Oceanibulbus indolifex HEL-45 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanibulbus;species:Oceanibulbus indolifex; 3423.5343 251817062 amyA Carbon Cycling Carbon degradation Starch Streptococcus suis SC84 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus suis; 3516.2974 56809535 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6642.3858 145246644 chnb Organic Remediation Other Hydrocarbons NA Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 3481.3851 18558955 nirk Nitrogen Denitrification NA Azospirillum doebereinerae superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 7051.4072 46307894 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 24248.6902 339441912 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. SY8519 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 3249.6696 298231624 PRK Carbon Cycling Carbon fixation Calvin cycle 'Nostoc azollae' 0708 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Trichormus;species:Trichormus azollae; 17295.5879 110648679 alkb Organic Remediation Other Hydrocarbons NA Alcanivorax borkumensis SK2 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Alcanivoracaceae;genus:Alcanivorax;species:Alcanivorax borkumensis; 3683.5596 209897346 xyla Carbon Cycling Carbon degradation Hemicellulose Enterobacter cancerogenus ATCC 35316 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter cancerogenus; 3183.4234 313891831 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Dialister microaerophilus UPII 345-E superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Dialister;species:Dialister micraerophilus; 6549.205 225590470 cellobiase Carbon Cycling Carbon degradation Cellulose Chaetomium thermophilum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium; 23939.1966 340527758 ara Carbon Cycling Carbon degradation Hemicellulose Amycolatopsis mediterranei S699 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Amycolatopsis;species:Amycolatopsis mediterranei; 170460.8572 7453.3528 60476265 dsrB Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 4552.9685 162072833 dsrB Sulfur sulfite reduction NA Thiocapsa roseopersicina superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Thiocapsa; 6953.9961 2650.2269 47716848 mcra Carbon Cycling Methane Methanogenesis uncultured archaeon superkingdom:Archaea; 18691.019 91720906 ppx Phosphorus Polyphosphate degradation NA Psychrobacter sp. PRwf-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter; 15802.2135 269976746 xyla Carbon Cycling Carbon degradation Hemicellulose Mobiluncus mulieris 28-1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus mulieris; 3012.6347 257892928 chitinase Carbon Cycling Carbon degradation Chitin Enterococcus faecium 1,231,408 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Enterococcaceae;genus:Enterococcus;species:Enterococcus faecium; 6613.5812 149204727 dehh109 Organic Remediation Chlorinated solvents NA Roseovarius sp. TM1035 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseovarius; 3258.4337 258533698 xyla Carbon Cycling Carbon degradation Hemicellulose Pantoea sp. At-9b superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea; 5796.2766 169763624 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 3014.2079 116490817 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Oenococcus oeni PSU-1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Leuconostocaceae;genus:Oenococcus;species:Oenococcus oeni; 7586.0624 309245896 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Paenibacillus polymyxa SC2 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus polymyxa; 5847.0083 110280406 napa Nitrogen Dissimilatory N reduction NA Cytophaga hutchinsonii ATCC 33406 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Cytophaga;species:Cytophaga hutchinsonii; 3200.8769 410152370 alkk Organic Remediation Others NA Glaciecola mesophila KMM 241 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Glaciecola;species:Glaciecola mesophila; 4074.8568 343509896 atza Organic Remediation Herbicides related compound NA Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 3564.1026 3296.6403 326542651 pme Carbon Cycling Carbon degradation Pectin Clostridium lentocellum DSM 5427 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Cellulosilyticum;species:Cellulosilyticum lentocellum; 3524.9011 70673041 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 5221.4286 353544177 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfosporosinus meridiei DSM 13257 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus meridiei; 3981.88 296423030 Sir Sulfur sulfite reduction NA Tuber melanosporum Mel28 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Pezizomycetes;order:Pezizales;family:Tuberaceae;genus:Tuber;species:Tuber melanosporum; 18538.4904 228610682 bphF1 Organic Remediation Aromatics Polycyclic aromatics Bacillus cereus MM3 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cereus; 34742.1049 62512299 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 46475.6882 3599.6931 23392973 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 7948.1745 111034973 dsrB Sulfur sulfite reduction NA Desulfatibacillus olefinivorans superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatiferula; 86713.3752 149276971 chrr Metal Homeostasis Chromium Detoxification Pedobacter sp. BAL39 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter; 10076.0874 334180855 terc Metal Homeostasis Tellurium Detoxification Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 9867.4025 413961005 catechol Organic Remediation Aromatics Other aromatics Burkholderia sp. SJ98 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 40328.2491 257456586 arsm Metal Homeostasis Arsenic Detoxification Treponema vincentii ATCC 35580 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetes;order:Spirochaetales;family:Spirochaetaceae;genus:Treponema;species:Treponema vincentii; 8262.4466 325662562 amyA Carbon Cycling Carbon degradation Starch Lachnospiraceae bacterium 4_1_37FAA superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae; 7588.0182 151302338 aps_apra Sulfur adenylylsulfate reductase NA Desulforhabdus sp. DDT superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophobacteraceae;genus:Desulforhabdus; 11154.9232 386924936 arylest Organic Remediation Aromatics Other aromatics Escherichia blattae DSM 4481 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Shimwellia;species:Shimwellia blattae; 5931.7695 2227.8772 91807186 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 7258.3622 345442277 amyA Carbon Cycling Carbon degradation Starch Bacillus megaterium WSH-002 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus megaterium; 3613.3503 218761596 hao Nitrogen Nitrification NA Desulfatibacillum alkenivorans AK-01 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfobacterales;family:Desulfobacteraceae;genus:Desulfatibacillum;species:Desulfatibacillum alkenivorans; 137200.9609 366090305 amyA Carbon Cycling Carbon degradation Starch Lactobacillus acidipiscis KCTC 13900 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus acidipiscis; 3295.4016 281421072 xylanase Carbon Cycling Carbon degradation Hemicellulose Prevotella copri DSM 18205 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella copri; 10111.2717 238798714 ppk Phosphorus Polyphosphate synthesis NA Yersinia mollaretii ATCC 43969 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia mollaretii; 4181.2598 299821398 gdh Nitrogen Ammonification NA Listeria grayi DSM 20601 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria grayi; 5809.7126 19914262 chna Organic Remediation Other Hydrocarbons NA Methanosarcina acetivorans C2A superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosarcina;species:Methanosarcina acetivorans; 2973.4903 383082933 glucoamylase Carbon Cycling Carbon degradation Starch Leptospirillum ferrooxidans C2-3 superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum;species:Leptospirillum ferrooxidans; 4031.0179 358055986 glx Carbon Cycling Carbon degradation Lignin Mixia osmundae IAM 14324 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;order:Mixiales;family:Mixiaceae;genus:Mixia;species:Mixia osmundae; 3624.5046 226306993 amyA Carbon Cycling Carbon degradation Starch Rhodococcus erythropolis PR4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus erythropolis; 10985.5646 799227 mcra Carbon Cycling Methane Methanogenesis superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales;family:Methanosarcinaceae;genus:Methanosalsum; 13907.4362 56798415 catechol_b Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 3581.3334 34017082 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 3172.0309 18159824 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Pyrobaculum aerophilum str. IM2 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Pyrobaculum;species:Pyrobaculum aerophilum; 2752.5105 343497402 chitinase Carbon Cycling Carbon degradation Chitin Vibrio nigripulchritudo ATCC 27043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio nigripulchritudo; 7876.6988 161391886 xyla Carbon Cycling Carbon degradation Hemicellulose Roseobacter litoralis Och 149 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter;species:Roseobacter litoralis; 47699.5152 256831975 exoglucanase Carbon Cycling Carbon degradation Cellulose Jonesia denitrificans DSM 20603 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Jonesiaceae;genus:Jonesia;species:Jonesia denitrificans; 91355.6843 392394158 amyA Carbon Cycling Carbon degradation Starch Desulfitobacterium dehalogenans ATCC 51507 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfitobacterium;species:Desulfitobacterium dehalogenans; 2969.581 223414530 mer Metal Homeostasis Mercury Detoxification bacterium enrichment culture clone IC10Bj1P3 3007.9706 156446875 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 46334.8525 302198960 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Clostridium saccharolyticum WM1 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium saccharolyticum; 2772.6947 225216107 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brachyspira hyodysenteriae WA1 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira hyodysenteriae; 49216.2408 298682290 catb Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida DOT-T1E superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida; 3440.2473 390518574 amyA Carbon Cycling Carbon degradation Starch Thermococcus sp. CL1 superkingdom:Archaea;phylum:Euryarchaeota;class:Thermococci;order:Thermococcales;family:Thermococcaceae;genus:Thermococcus; 5117.9807 282949471 napa Nitrogen Dissimilatory N reduction NA Citrobacter rodentium ICC168 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter rodentium; 3506.2486 323527759 tktA Carbon Cycling Carbon fixation Calvin cycle Burkholderia sp. CCGE1001 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 2837.7206 218438658 nira Nitrogen Assimilatory N reduction NA Cyanothece sp. PCC 7424 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 2814.7333 294053901 beta_agarase Carbon Cycling Carbon degradation Agar Coraliomargarita akajimensis DSM 45221 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Opitutae;order:Puniceicoccales;family:Puniceicoccaceae;genus:Coraliomargarita;species:Coraliomargarita akajimensis; 4725.003 497878 nifh Nitrogen Nitrogen fixation NA NA superkingdom:Bacteria; 114381.2164 227198985 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Corynebacterium striatum ATCC 6940 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium striatum; 5612.0568 182678542 ppx Phosphorus Polyphosphate degradation NA Beijerinckia indica subsp. indica ATCC 9039 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Beijerinckiaceae;genus:Beijerinckia;species:Beijerinckia indica; 16597.4337 328524694 rgl Carbon Cycling Carbon degradation Pectin Bacteroides clarus YIT 12056 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides clarus; 2718.4598 319946870 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Streptococcus australis ATCC 700641 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus australis; 3049.4024 223585996 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 4164.9941 150850481 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Botryotinia fuckeliana B05.10 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;order:Helotiales;family:Sclerotiniaceae;genus:Botryotinia;species:Botryotinia fuckeliana; 123854.4726 223557983 amyA Carbon Cycling Carbon degradation Starch uncultured bacterium URE4 superkingdom:Bacteria; 3394.5327 410372126 proO Organic Remediation Aromatics Other aromatics Klebsiella oxytoca M5al superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;species:Klebsiella oxytoca; 4649.8395 375140294 one_ring_23diox Organic Remediation Aromatics Other aromatics Mycobacterium rhodesiae NBB3 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium rhodesiae; 5666.3173 300245987 ben_bcla virulence NA NA Clostridia bacterium enrichment culture clone BF superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia; 5162.883 299752600 xylanase Carbon Cycling Carbon degradation Hemicellulose Coprinopsis cinerea okayama7#130 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;species:Coprinopsis cinerea; 3034.2697 208605294 hao Nitrogen Nitrification NA Candidatus Anammoxoglobus sp. enrichment culture clone HZO2 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetacia;order:Planctomycetales;genus:Candidatus Anammoxoglobus; 3966.8892 262374390 urec Nitrogen Ammonification NA Acinetobacter junii SH205 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter junii; 15059.7518 206603320 sqr Sulfur Sulfide Oxidation NA Leptospirillum sp. Group II '5-way CG' superkingdom:Bacteria;phylum:Nitrospirae;class:Nitrospira;order:Nitrospirales;family:Nitrospiraceae;genus:Leptospirillum; 2500.2068 2169.9356 400387622 xylj Organic Remediation Aromatics BTEX and related aromatics Acinetobacter baumannii Naval-18 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter;species:Acinetobacter baumannii; 2554.8764 408888187 linb Organic Remediation Pesticides related compound NA Vibrio cholerae HENC-03 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 4331.5725 255990267 B_lactamase_A Virulence Antibiotic resistance Degradation Clostridium thermocellum DSM 2360 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium thermocellum; 4078.31 374619126 dmdA Sulfur DMSP degradation NA gamma proteobacterium HIMB55 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 3257.855 373501247 amyA Carbon Cycling Carbon degradation Starch Prevotella micans F0438 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella micans; 2726.1061 329758848 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter sp. SXCC-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter; 2475.7677 90018513 catechol Organic Remediation Aromatics Other aromatics Acinetobacter baumannii superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 13294.7529 50657075 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 2249.0563 158439748 trza Organic Remediation Herbicides related compound NA Clostridium bolteae ATCC BAA-613 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium bolteae; 3921.5773 118424370 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2418.7542 70983922 pme_Cdeg Carbon Cycling Carbon degradation Pectin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus fumigatus; 24899.2455 270343214 arylest Organic Remediation Aromatics Other aromatics Dickeya dadantii Ech586 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya dadantii; 13636.7588 325109543 arsc Metal Homeostasis Arsenic Detoxification Planctomyces brasiliensis DSM 5305 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae;genus:Planctomyces;species:Planctomyces brasiliensis; 2742.7246 92435828 amyA Carbon Cycling Carbon degradation Starch Mycobacterium sp. JLS superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium; 2346.8693 302674152 endochitinase Carbon Cycling Carbon degradation Chitin Schizophyllum commune H4-8 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Schizophyllaceae;genus:Schizophyllum;species:Schizophyllum commune; 3014.2343 323707076 por_DiC4HB Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Vulcanisaeta moutnovskia 768-28 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Vulcanisaeta;species:Vulcanisaeta moutnovskia; 2256.6108 315492406 narg Nitrogen Denitrification NA Mobiluncus curtisii subsp. holmesii ATCC 35242 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Mobiluncus;species:Mobiluncus curtisii; 2576.6397 281299949 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella buccalis ATCC 35310 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella buccalis; 2401.8045 158320129 arsm Metal Homeostasis Arsenic Detoxification Alkaliphilus oremlandii OhILAs superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Alkaliphilus;species:Alkaliphilus oremlandii; 4259.5213 226291288 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Paracoccidioides brasiliensis Pb18 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;genus:Paracoccidioides;species:Paracoccidioides brasiliensis; 9506.4675 91807192 nosz Nitrogen Denitrification NA uncultured alpha proteobacterium superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria; 12174.4379 76882723 hao Nitrogen Nitrification NA Nitrosococcus oceani ATCC 19707 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Chromatiaceae;genus:Nitrosococcus;species:Nitrosococcus oceani; 263010.7797 290349616 exaa(moxf) Organic Remediation Chlorinated solvents NA Bradyrhizobium sp. MAFF 211645 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 6193.0396 8978305 bphc Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 2477.5752 404274401 alkb Organic Remediation Other Hydrocarbons NA Leptospira licerasiae str. MMD4847 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Leptospiraceae;genus:Leptospira;species:Leptospira licerasiae; 2992.4142 18542429 protease_serine_fungi Carbon Cycling Carbon degradation protein Tolypocladium inflatum superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Tolypocladium; 6891.4893 283832122 ppx Phosphorus Polyphosphate degradation NA Citrobacter youngae ATCC 29220 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;species:Citrobacter youngae; 28746.1396 149833602 amyA Carbon Cycling Carbon degradation Starch Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus obeum; 11360.9397 11558498 protease_aspartate_fungi Carbon Cycling Carbon degradation protein Hypocrea lixii superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Hypocreaceae;genus:Hypocrea; 3408.0962 381205824 dehh109 Organic Remediation Chlorinated solvents NA SAR324 cluster bacterium JCVI-SC AAA005 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria; 3050.3914 109452558 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 3633.4915 297555715 vgb Virulence Antibiotic resistance Degradation Ktedonobacter racemifer DSM 44963 superkingdom:Bacteria;phylum:Chloroflexi;class:Ktedonobacteria;order:Ktedonobacterales;family:Ktedonobacteraceae;genus:Ktedonobacter;species:Ktedonobacter racemifer; 3835.4702 76667420 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 3497.8629 331014937 chitinase Carbon Cycling Carbon degradation Chitin Pseudomonas syringae pv. lachrymans str. M302278 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas amygdali; 2180.0153 364570584 ppx Phosphorus Polyphosphate degradation NA Hafnia alvei ATCC 51873 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Hafnia;species:Hafnia alvei; 2592.0346 242774699 phospholipase_C_fungi Carbon Cycling Carbon degradation Phospholipids Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 8160.073 110341440 nifh Nitrogen Nitrogen fixation NA Chlorobium ferrooxidans DSM 13031 superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobium;species:Chlorobium ferrooxidans; 81540.0842 46307984 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 2349.8705 388565312 terc Metal Homeostasis Tellurium Detoxification Hydrogenophaga sp. PBC superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Hydrogenophaga; 2697.3142 300353585 terc Metal Homeostasis Tellurium Detoxification Lactobacillus gasseri JV-V03 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gasseri; 3676.187 94470841 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 2290.0206 340350618 amyA Carbon Cycling Carbon degradation Starch Prevotella nigrescens ATCC 33563 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella nigrescens; 17113.7927 94552570 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Candidatus Koribacter versatilis Ellin345 superkingdom:Bacteria;phylum:Acidobacteria;genus:Candidatus Koribacter;species:Candidatus Koribacter versatilis; 2787.0445 329113932 arsc Metal Homeostasis Arsenic Detoxification Acetobacter pomorum DM001 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Acetobacter;species:Acetobacter pomorum; 3351.4929 407069332 atzb Organic Remediation Herbicides related compound NA Vibrio cyclitrophicus ZF14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cyclitrophicus; 191112.4028 332826459 ara Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 8889.0525 50085067 pgk Carbon Cycling Carbon fixation Calvin cycle Acinetobacter sp. ADP1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Acinetobacter; 2069.1685 157404591 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 6632.7192 322395693 hao Nitrogen Nitrification NA Methylocystis sp. ATCC 49242 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Methylocystaceae;genus:Methylocystis; 2797.8225 55978125 dsrB Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 42506.8873 157912581 dmsa Organic Remediation Others NA Dinoroseobacter shibae DFL 12 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Dinoroseobacter;species:Dinoroseobacter shibae; 4886.786 354565627 amyA Carbon Cycling Carbon degradation Starch Fischerella sp. JSC-11 superkingdom:Bacteria;phylum:Cyanobacteria;order:Stigonematales;genus:Fischerella; 6222.8567 10443292 thmAB Organic Remediation Others NA Pseudonocardia sp. K1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Pseudonocardiaceae;genus:Pseudonocardia; 2340.4016 18034161 aps_apra Sulfur adenylylsulfate reductase NA Thermodesulfobacterium commune superkingdom:Bacteria;phylum:Thermodesulfobacteria;class:Thermodesulfobacteria;order:Thermodesulfobacteriales;family:Thermodesulfobacteriaceae;genus:Thermodesulfobacterium;species:Thermodesulfobacterium commune; 29864.4364 73762812 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 35474.3787 218548072 arsc Metal Homeostasis Arsenic Detoxification Escherichia fergusonii ATCC 35469 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;species:Escherichia fergusonii; 2234.6805 320150387 poba Organic Remediation Aromatics Aromatic carboxylic acid Thermus scotoductus SA-01 superkingdom:Bacteria;phylum:Deinococcus-Thermus;class:Deinococci;order:Thermales;family:Thermaceae;genus:Thermus;species:Thermus scotoductus; 4026.149 33385671 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 6944.9526 260876551 amyA Carbon Cycling Carbon degradation Starch Vibrio parahaemolyticus AN-5034 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio parahaemolyticus; 2349.0799 394730931 terc Metal Homeostasis Tellurium Detoxification Enterobacter sp. Ag1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter; 1903.6979 157404625 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 2431.4944 312217489 cellobiase Carbon Cycling Carbon degradation Cellulose Leptosphaeria maculans superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Leptosphaeriaceae;genus:Leptosphaeria; 2923.4541 145231178 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus niger superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus niger; 2078.2783 91687722 ophc Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia xenovorans; 2434.7807 335420386 nira Nitrogen Assimilatory N reduction NA Salinisphaera shabanensis E1L3A superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Salinisphaerales;family:Salinisphaeraceae;genus:Salinisphaera;species:Salinisphaera shabanensis; 4752.7262 372103416 pula Carbon Cycling Carbon degradation Starch Corynebacterium diphtheriae C7 (beta) superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium diphtheriae; 3375.7456 169775587 exopolygalacturonase_fungi Carbon Cycling Carbon degradation Pectin Aspergillus oryzae RIB40 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus oryzae; 2327.6907 26553907 cellobiase Carbon Cycling Carbon degradation Cellulose Mycoplasma penetrans HF-2 superkingdom:Bacteria;phylum:Tenericutes;class:Mollicutes;order:Mycoplasmatales;family:Mycoplasmataceae;genus:Mycoplasma;species:Mycoplasma penetrans; 2277.0651 189193803 cellobiase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 2674.6064 90440191 arylest Organic Remediation Aromatics Other aromatics Vibrio angustum S14 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium angustum; 18403.2814 110612603 nifh Nitrogen Nitrogen fixation NA uncultured nitrogen-fixing bacterium superkingdom:Bacteria; 12639.2776 304407330 ara Carbon Cycling Carbon degradation Hemicellulose Paenibacillus curdlanolyticus YK9 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus curdlanolyticus; 20119.3125 28269853 arsc Metal Homeostasis Arsenic Detoxification Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 25053.5816 255344067 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pedobacter heparinus DSM 2366 superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Pedobacter;species:Pedobacter heparinus; 4017.3426 50842291 terc Metal Homeostasis Tellurium Detoxification Propionibacterium acnes KPA171202 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Propionibacteriaceae;genus:Propionibacterium;species:Propionibacterium acnes; 26007.5036 336253553 pme Carbon Cycling Carbon degradation Pectin Halopiger xanaduensis SH-6 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Halopiger;species:Halopiger xanaduensis; 2873.633 209959021 amyA Carbon Cycling Carbon degradation Starch Rhodospirillum centenum SW superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Rhodospirillum;species:Rhodospirillum centenum; 9988.2097 307689004 ara Carbon Cycling Carbon degradation Hemicellulose Clostridium cellulovorans 743B superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium cellulovorans; 3530.3401 347579367 vana Carbon Cycling Carbon degradation Vanillin/Lignin Gluconacetobacter xylinus NBRC 3288 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Acetobacteraceae;genus:Gluconacetobacter;species:Gluconacetobacter xylinus; 2989.0383 5616133 mcra Carbon Cycling Methane Methanogenesis uncultured methanogen ODP8-ME6 superkingdom:Archaea;phylum:Euryarchaeota;class:Methanomicrobia;order:Methanosarcinales; 8836.9961 163859225 dehh Organic Remediation Chlorinated solvents NA Bordetella petrii DSM 12804 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Alcaligenaceae;genus:Bordetella;species:Bordetella petrii; 5502.5944 357011151 vgb Virulence Antibiotic resistance Degradation Paenibacillus elgii B69 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus elgii; 12421.1797 121534038 bphF1 Organic Remediation Aromatics Polycyclic aromatics Thermosinus carboxydivorans Nor1 superkingdom:Bacteria;phylum:Firmicutes;class:Negativicutes;order:Selenomonadales;family:Veillonellaceae;genus:Thermosinus;species:Thermosinus carboxydivorans; 2181.7928 84664533 dehh109 Organic Remediation Chlorinated solvents NA Rhodobacterales bacterium HTCC2654 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Maritimibacter;species:Maritimibacter alkaliphilus; 6537.1515 119458095 nitro Organic Remediation Others NA Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 3938.5634 390421656 arsc Metal Homeostasis Arsenic Detoxification Aequorivita sublithincola DSM 14238 superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Aequorivita;species:Aequorivita sublithincola; 9095.6529 366166558 arsc Metal Homeostasis Arsenic Detoxification Acetivibrio cellulolyticus CD2 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Acetivibrio;species:Acetivibrio cellulolyticus; 2454.9233 285878263 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 3946.591 120553547 alkb Organic Remediation Other Hydrocarbons NA Marinobacter aquaeolei VT8 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter;species:Marinobacter hydrocarbonoclasticus; 3022.2982 327310435 PEP_synthase Carbon Cycling Carbon fixation Dicarboxylate/4-hydroxybutyrate cycle Thermoproteus uzoniensis 768-20 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Thermoproteales;family:Thermoproteaceae;genus:Thermoproteus;species:Thermoproteus uzoniensis; 3762.1751 335335213 rubisco Carbon Cycling Carbon fixation Calvin cycle Methylacidiphilum fumariolicum superkingdom:Bacteria;phylum:Verrucomicrobia;order:Methylacidiphilales;family:Methylacidiphilaceae;genus:Methylacidiphilum; 2698.1927 385763898 SoxC Sulfur Sulfur Oxidation NA uncultured bacterium ws406H10 superkingdom:Bacteria; 3465.5395 332829764 xylanase Carbon Cycling Carbon degradation Hemicellulose Dysgonomonas gadei ATCC BAA-286 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Dysgonomonas;species:Dysgonomonas gadei; 3979.591 6050.4486 55847393 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 7559.7702 254444236 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Verrucomicrobiae bacterium DG1235 superkingdom:Bacteria;phylum:Verrucomicrobia;class:Verrucomicrobiae;order:Verrucomicrobiales; 3922.1331 339613469 nrfa Nitrogen Dissimilatory N reduction NA Prevotella pallens ATCC 700821 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella pallens; 7128.1976 74038304 nirs Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 2245.8755 357212756 APS_AprB Sulfur adenylylsulfate reductase NA Desulfosporosinus orientis DSM 765 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Peptococcaceae;genus:Desulfosporosinus;species:Desulfosporosinus orientis; 3200.1386 111020236 cpnb Organic Remediation Other Hydrocarbons NA Rhodococcus sp. RHA1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus jostii; 3283.2047 346330961 amyA Carbon Cycling Carbon degradation Starch Lactobacillus ruminis ATCC 25644 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus ruminis; 27676.5463 209501753 pcag Organic Remediation Aromatics Other aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; 13243.5367 318056178 SoxB Sulfur Sulfur Oxidation NA uncultured bacterium superkingdom:Bacteria; 2442.0522 4846.306 268316629 xylanase Carbon Cycling Carbon degradation Hemicellulose Rhodothermus marinus DSM 4252 superkingdom:Bacteria;phylum:Bacteroidetes;order:Bacteroidetes Order II. Incertae sedis;family:Rhodothermaceae;genus:Rhodothermus;species:Rhodothermus marinus; 2149.9894 300088611 rd Organic Remediation Chlorinated solvents NA Dehalogenimonas lykanthroporepellens BL-DC-9 superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidia;genus:Dehalogenimonas;species:Dehalogenimonas lykanthroporepellens; 10376.4646 126626708 amie Organic Remediation Aromatics Other aromatics Marinobacter sp. ELB17 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacter; 29647.817 242790441 protease_serine_fungi Carbon Cycling Carbon degradation protein Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 2995.6328 324032249 amyA Carbon Cycling Carbon degradation Starch Clostridium sp. D5 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium; 21114.4231 386405062 amyA Carbon Cycling Carbon degradation Starch planctomycete KSU-1 superkingdom:Bacteria;phylum:Planctomycetes;class:Planctomycetia;order:Planctomycetales;family:Planctomycetaceae; 8695.5242 342795043 nrfa Nitrogen Dissimilatory N reduction NA Vibrio scophthalmi LMG 19158 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio scophthalmi; 33132.223 21622517 lactase_fungi Carbon Cycling Carbon degradation Lactose Neurospora crassa superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora; 3723.1094 90411477 phn Organic Remediation Herbicides related compound NA Photobacterium profundum 3TCK superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Photobacterium;species:Photobacterium profundum; 2784.3069 119483454 FBPase Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 2895.6242 67633920 nifh Nitrogen Nitrogen fixation NA Lyngbya majuscula CCAP 1446/4 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya;species:Lyngbya majuscula; 7189.2077 219848922 catechol_b Organic Remediation Aromatics Other aromatics Chloroflexus aggregans DSM 9485 superkingdom:Bacteria;phylum:Chloroflexi;class:Chloroflexi;order:Chloroflexales;family:Chloroflexaceae;genus:Chloroflexus;species:Chloroflexus aggregans; 3696.9019 77957181 terc Metal Homeostasis Tellurium Detoxification Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 2060.3462 118168807 badh Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium smegmatis; 57504.2539 177826804 exaa(moxf) Organic Remediation Chlorinated solvents NA Burkholderiales bacterium RZ18-153 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales; 5691.5075 356659140 xylg Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus opacus PD630 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 4375.0459 88791035 PRI Carbon Cycling Carbon fixation Calvin cycle Nitrococcus mobilis Nb-231 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Nitrococcus;species:Nitrococcus mobilis; 7637.3095 325554732 cellobiase Carbon Cycling Carbon degradation Cellulose Rhodococcus equi ATCC 33707 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus equi; 30198.8689 226432217 B_lactamase_A Virulence Antibiotic resistance Degradation Raoultella terrigena superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Raoultella; 3492.5238 189419880 terc Metal Homeostasis Tellurium Detoxification Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; 2532.8859 281315069 xyla Carbon Cycling Carbon degradation Hemicellulose Victivallis vadensis ATCC BAA-548 superkingdom:Bacteria;phylum:Lentisphaerae;class:Lentisphaeria;family:Victivallaceae;genus:Victivallis;species:Victivallis vadensis; 2255.3447 298577513 amyA Carbon Cycling Carbon degradation Starch Prevotella oris C735 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Prevotella;species:Prevotella oris; 2080.1845 326407143 amyA Carbon Cycling Carbon degradation Starch Lactococcus lactis subsp. lactis CV56 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Lactococcus;species:Lactococcus lactis; 5456.5431 334179989 arsc Metal Homeostasis Arsenic Detoxification Caldalkalibacillus thermarum TA2.A1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Caldalkalibacillus;species:Caldalkalibacillus thermarum; 50709.8131 229339945 cda Carbon Cycling Carbon degradation Starch Vibrio cholerae TM 11079-80 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio cholerae; 5049.9392 317127282 xyla Carbon Cycling Carbon degradation Hemicellulose Bacillus cellulosilyticus DSM 2522 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus cellulosilyticus; 10522.3083 238840267 protease_serine_fungi Carbon Cycling Carbon degradation protein Arthroderma otae CBS 113480 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Arthrodermataceae;genus:Arthroderma;species:Arthroderma otae; 14218.0033 397885426 nitro Organic Remediation Others NA Pseudomonas fluorescens Q2-87 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas fluorescens; 20889.7805 558315 rgh Carbon Cycling Carbon degradation Pectin Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 6513.5864 129279092 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 4196.1236 88180274 pec_Cdeg Carbon Cycling Carbon degradation Pectin Chaetomium globosum CBS 148.51 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Chaetomiaceae;genus:Chaetomium;species:Chaetomium globosum; 6065.1073 70607910 Sir Sulfur sulfite reduction NA Sulfolobus acidocaldarius DSM 639 superkingdom:Archaea;phylum:Crenarchaeota;class:Thermoprotei;order:Sulfolobales;family:Sulfolobaceae;genus:Sulfolobus;species:Sulfolobus acidocaldarius; 4474.3789 300685132 ppx Phosphorus Polyphosphate degradation NA Corynebacterium pseudotuberculosis FRC41 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium pseudotuberculosis; 6866.0237 85722388 B_lactamase_A Virulence Antibiotic resistance Degradation Syntrophus aciditrophicus SB superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Syntrophobacterales;family:Syntrophaceae;genus:Syntrophus;species:Syntrophus aciditrophicus; 5913.4716 83316792 nirk Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 10969.9212 146410346 tfda Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; 8215.1417 163811783 rd Organic Remediation Chlorinated solvents NA Dehalococcoides sp. VS superkingdom:Bacteria;phylum:Chloroflexi;class:Dehalococcoidetes;genus:Dehalococcoides; 17790.8454 28272084 amyA Carbon Cycling Carbon degradation Starch Lactobacillus plantarum WCFS1 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus plantarum; 5799.2317 71002188 cutinase Carbon Cycling Carbon degradation Cutin Aspergillus fumigatus Af293 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Aspergillus fumigatus; 22452.6742 375335603 ppx Phosphorus Polyphosphate degradation NA Succinivibrionaceae bacterium WG-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Aeromonadales;family:Succinivibrionaceae; 5026.0261 354722758 chitinase Carbon Cycling Carbon degradation Chitin Enterobacter mori LMG 25706 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Enterobacter;species:Enterobacter mori; 4165.4903 300871303 fthfs Carbon Cycling Carbon fixation Reductive acetyl¨CCoA pathway Brachyspira pilosicoli 95/1000 superkingdom:Bacteria;phylum:Spirochaetes;class:Spirochaetia;order:Spirochaetales;family:Brachyspiraceae;genus:Brachyspira;species:Brachyspira pilosicoli; 4269.5498 115390513 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Aspergillus terreus NIH2624 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus terreus; 6743.3413 166857321 arsc Metal Homeostasis Arsenic Detoxification Thermoanaerobacter pseudethanolicus ATCC 33223 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Thermoanaerobacterales;family:Thermoanaerobacteraceae;genus:Thermoanaerobacter;species:Thermoanaerobacter pseudethanolicus; 14388.2522 14348604 narg Nitrogen Denitrification NA Paracoccus pantotrophus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Paracoccus; 4281.5279 359825660 mannanase Carbon Cycling Carbon degradation Hemicellulose Clostridium clariflavum DSM 19732 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium clariflavum; 5562.5356 156112461 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Bacteroides ovatus ATCC 8483 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides ovatus; 21813.8354 393775232 dehh Organic Remediation Chlorinated solvents NA Ralstonia sp. PBA superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Ralstonia; 117550.508 375262664 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Vibrio sp. EJY3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio; 6492.085 121997966 PRI Carbon Cycling Carbon fixation Calvin cycle Halorhodospira halophila SL1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Chromatiales;family:Ectothiorhodospiraceae;genus:Halorhodospira;species:Halorhodospira halophila; 7132.139 262264575 nirk Nitrogen Denitrification NA Haloferax mediterranei ATCC 33500 superkingdom:Archaea;phylum:Euryarchaeota;class:Halobacteria;order:Halobacteriales;family:Halobacteriaceae;genus:Haloferax;species:Haloferax mediterranei; 4264.0514 212692219 ara Carbon Cycling Carbon degradation Hemicellulose Bacteroides dorei DSM 17855 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Bacteroidaceae;genus:Bacteroides;species:Bacteroides dorei; 5381.4295 261204715 glx Carbon Cycling Carbon degradation Lignin Ajellomyces dermatitidis SLH14081 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Onygenales;family:Ajellomycetaceae;genus:Ajellomyces;species:Ajellomyces dermatitidis; 33662.1817 154086159 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Parabacteroides merdae ATCC 43184 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Parabacteroides;species:Parabacteroides merdae; 4598.6568 86609604 TIM Carbon Cycling Carbon fixation Calvin cycle Synechococcus sp. JA-2-3B'a(2-13) superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechococcus; 4897.5303 361057017 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Pediococcus claussenii ATCC BAA-344 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Pediococcus;species:Pediococcus claussenii; 32669.5666 121703055 vdh Carbon Cycling Carbon degradation Vanillin/Lignin Aspergillus clavatus NRRL 1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus;species:Aspergillus clavatus; 19692.3915 399909737 catechol Organic Remediation Aromatics Other aromatics Halomonas sp. KM-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Oceanospirillales;family:Halomonadaceae;genus:Halomonas; 8503.0682 226094969 gdh Nitrogen Ammonification NA Brevibacillus brevis NBRC 100599 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Brevibacillus;species:Brevibacillus brevis; 5285.4799 212538175 glucoamylase Carbon Cycling Carbon degradation Starch Penicillium marneffei ATCC 18224 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Penicillium;species:Penicillium marneffei; 13393.5885 86284876 TIM Carbon Cycling Carbon fixation Calvin cycle Rhizobium etli CFN 42 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium etli; 403019.4006 395331071 badh Organic Remediation Aromatics Other aromatics Dichomitus squalens LYAD-421 SS1 superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Polyporales;family:Polyporaceae;genus:Dichomitus;species:Dichomitus squalens; 8460.5822 6014526 dsra Sulfur sulfite reduction NA Solar Lake Mat Clone50 superkingdom:Bacteria; 55238.7274 332534532 Sir Sulfur sulfite reduction NA Pseudoalteromonas haloplanktis ANT/505 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; 39545.6967 149830953 ppx Phosphorus Polyphosphate degradation NA Ruminococcus obeum ATCC 29174 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Lachnospiraceae;genus:Blautia;species:[Ruminococcus] obeum; 10489.6184 315281918 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Listeria marthii FSL S4-120 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Listeriaceae;genus:Listeria;species:Listeria marthii; 12061.9333 242806235 nahf Organic Remediation Aromatics Polycyclic aromatics Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 6371.5119 355375179 acetylglucosaminidase Carbon Cycling Carbon degradation Chitin Prevotella sp. oral taxon 302 str. F0323 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Prevotellaceae;genus:Alloprevotella;species:Alloprevotella rava; 5257.7362 114330818 ccmL Carbon Cycling Carbon fixation Bacterial Microcompartments Nitrosomonas eutropha C91 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Nitrosomonadales;family:Nitrosomonadaceae;genus:Nitrosomonas;species:Nitrosomonas eutropha; 5327.7061 242120850 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Desulfovibrio salexigens DSM 2638 superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfovibrionales;family:Desulfovibrionaceae;genus:Desulfovibrio;species:Desulfovibrio salexigens; 4385.2946 21673694 aps_apra Sulfur adenylylsulfate reductase NA Chlorobium tepidum TLS superkingdom:Bacteria;phylum:Chlorobi;class:Chlorobia;order:Chlorobiales;family:Chlorobiaceae;genus:Chlorobaculum;species:Chlorobaculum tepidum; 4753.2639 158138869 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 16428.3603 333607095 amyA Carbon Cycling Carbon degradation Starch Paenibacillus sp. HGF7 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; 13681.1906 332372358 rubisco Carbon Cycling Carbon fixation Calvin cycle uncultured bacterium superkingdom:Bacteria; 11436.3563 110683480 cda Carbon Cycling Carbon degradation Starch Clostridium perfringens SM101 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium perfringens; 5596.1168 110931992 nifh Nitrogen Nitrogen fixation NA uncultured marine bacterium superkingdom:Bacteria; 4257.6385 330810413 alginase Carbon Cycling Carbon degradation Alginate Pseudomonas brassicacearum subsp. brassicacearum NFM421 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas brassicacearum; 4464.4342 242773185 cellobiase Carbon Cycling Carbon degradation Cellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 77648.0105 167594143 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 4503.3191 114566623 mannanase Carbon Cycling Carbon degradation Hemicellulose Syntrophomonas wolfei subsp. wolfei str. Goettingen superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Syntrophomonadaceae;genus:Syntrophomonas;species:Syntrophomonas wolfei; 727406.2586 328455156 ppx Phosphorus Polyphosphate degradation NA Coriobacterium glomerans PW2 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Coriobacteriales;family:Coriobacteriaceae;genus:Coriobacterium;species:Coriobacterium glomerans; 5029.2447 335342477 amyA Carbon Cycling Carbon degradation Starch Vibrio anguillarum 775 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Vibrio;species:Vibrio anguillarum; 11942.0735 226242566 cdh Carbon Cycling Carbon degradation Terpenes Rhodococcus opacus B4 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus;species:Rhodococcus opacus; 1894100.4598 171688650 phospholipase_A2_fungi Carbon Cycling Carbon degradation Phospholipids Podospora anserina S mat+ superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Lasiosphaeriaceae;genus:Podospora;species:Podospora anserina; 4867.4267 85825053 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Roseobacter sp. MED193 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Roseobacter; 4766.5787 19171683 nitrate_reductase Nitrogen N Assimilation NA Aspergillus fumigatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; 21146.6793 119493137 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 6147.4711 189194689 ligninase Carbon Cycling Carbon degradation Lignin Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 9159.8045 41367280 phenol_oxidase Carbon Cycling Carbon degradation Lignin uncultured Basidiomycota superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota; 7560.4972 396162 urec Nitrogen Ammonification NA Helicobacter felis superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter; 5056.9447 373227623 urec Nitrogen Ammonification NA Odoribacter laneus YIT 12061 superkingdom:Bacteria;phylum:Bacteroidetes;class:Bacteroidia;order:Bacteroidales;family:Porphyromonadaceae;genus:Odoribacter;species:Odoribacter laneus; 52016.3955 255035311 RgaE Carbon Cycling Carbon degradation Pectin Dyadobacter fermentans DSM 18053 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Dyadobacter;species:Dyadobacter fermentans; 128336.649 71383870 nasa Nitrogen Assimilatory N reduction NA uncultured bacterium superkingdom:Bacteria; 9656.5995 242773041 mannanase Carbon Cycling Carbon degradation Hemicellulose Talaromyces stipitatus ATCC 10500 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Talaromyces;species:Talaromyces stipitatus; 5213.5471 372269874 urec Nitrogen Ammonification NA Marinobacterium stanieri S30 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Alteromonadaceae;genus:Marinobacterium;species:Marinobacterium stanieri; 5591.7026 157850405 one_ring_23diox Organic Remediation Aromatics Other aromatics uncultured bacterium superkingdom:Bacteria; 12261.7873 317056760 amyA Carbon Cycling Carbon degradation Starch Ruminococcus albus 7 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Ruminococcaceae;genus:Ruminococcus;species:Ruminococcus albus; 5140.6452 189206069 exoglucanase Carbon Cycling Carbon degradation Cellulose Pyrenophora tritici-repentis Pt-1C-BFP superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Pleosporaceae;genus:Pyrenophora;species:Pyrenophora tritici-repentis; 5090.4584 34017156 dsra Sulfur sulfite reduction NA uncultured bacterium superkingdom:Bacteria; 145650.4539 116743256 dsra Sulfur sulfite reduction NA uncultured sulfate-reducing bacterium superkingdom:Bacteria; 6989.2398 289557720 terc Metal Homeostasis Tellurium Detoxification Micrococcus luteus SK58 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Micrococcus;species:Micrococcus luteus; 837837.0785 77958961 ppx Phosphorus Polyphosphate degradation NA Yersinia bercovieri ATCC 43970 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Yersinia;species:Yersinia bercovieri; 1361698.6642 172038093 Sir Sulfur sulfite reduction NA Cyanothece sp. ATCC 51142 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Cyanothece; 7432.7983 51243156 pcpe Organic Remediation Herbicides related compound NA Sphingomonas sp. tfd44 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 4384.9766 93005814 urec Nitrogen Ammonification NA Psychrobacter cryohalolentis K5 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Moraxellaceae;genus:Psychrobacter;species:Psychrobacter cryohalolentis; 7042.6708 119473373 amyA Carbon Cycling Carbon degradation Starch Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; 205148.2747 312441532 exaa(moxf) Organic Remediation Chlorinated solvents NA Methylovorus sp. MP688 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Methylophilales;family:Methylophilaceae;genus:Methylovorus; 4124.0758 379566201 nfsa_2 Organic Remediation Aromatics Nitoaromatics Streptococcus pneumoniae GA17719 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Streptococcaceae;genus:Streptococcus;species:Streptococcus pneumoniae; 5024.0296 160917825 nosz Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 5776.8671 350270151 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Oscillibacter valericigenes Sjm18-20 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Oscillospiraceae;genus:Oscillibacter;species:Oscillibacter valericigenes; 5752.5561 56809505 nifh Nitrogen Nitrogen fixation NA uncultured bacterium superkingdom:Bacteria; 5831.7987 153955664 gdh Nitrogen Ammonification NA Clostridium kluyveri DSM 555 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium kluyveri; 5626.3158 295968433 catb Organic Remediation Aromatics BTEX and related aromatics Corynebacterium ammoniagenes DSM 20306 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Corynebacteriaceae;genus:Corynebacterium;species:Corynebacterium ammoniagenes; 5868.3089 89070365 xyla Carbon Cycling Carbon degradation Hemicellulose Oceanicola granulosus HTCC2516 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola granulosus; 32697.6272 59710918 cysI Sulfur Other NA Vibrio fischeri ES114 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales;family:Vibrionaceae;genus:Aliivibrio;species:Aliivibrio fischeri; 18148.718 49610894 bphF1 Organic Remediation Aromatics Polycyclic aromatics Erwinia carotovora subsp. atroseptica SCRI1043 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pectobacterium;species:Pectobacterium atrosepticum; 5940.3277 247537341 pectinase (pectate_lyase) Carbon Cycling Carbon degradation Pectin Dickeya zeae Ech1591 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Dickeya;species:Dickeya zeae; 34213.6279 148980240 chitinase Carbon Cycling Carbon degradation Chitin Vibrionales bacterium SWAT-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Vibrionales; 4862.2104 17133373 phytase Phosphorus Phytic acid hydrolysis NA Nostoc sp. PCC 7120 superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc; 6028.5989 398803791 amie Organic Remediation Aromatics Other aromatics Polaromonas sp. CF318 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Polaromonas; 4697.3982 408748401 badh Organic Remediation Aromatics Other aromatics Rhizobium mesoamericanum STM3625 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Rhizobium;species:Rhizobium mesoamericanum; 235378.863 94471325 narg Nitrogen Denitrification NA uncultured bacterium superkingdom:Bacteria; 9032.5899 326203038 dsra Sulfur sulfite reduction NA Clostridium papyrosolvens DSM 2782 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium papyrosolvens; 8599.0589 119492218 GAPDH_Calvin Carbon Cycling Carbon fixation Calvin cycle Lyngbya sp. PCC 8106 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Lyngbya; 4305.6904 239833506 terc Metal Homeostasis Tellurium Detoxification Ochrobactrum intermedium LMG 3301 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Brucellaceae;genus:Ochrobactrum;species:Ochrobactrum intermedium; 17475.3139 253577663 chitinase Carbon Cycling Carbon degradation Chitin Paenibacillus sp. oral taxon 786 str. D14 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus;species:Paenibacillus sp. oral taxon 786; 11219.6377 196182968 amyA Carbon Cycling Carbon degradation Starch Microcoleus chthonoplastes PCC 7420 superkingdom:Bacteria;phylum:Cyanobacteria;order:Oscillatoriales;genus:Coleofasciculus;species:Coleofasciculus chthonoplastes; 6599.1243 398184659 quinoline Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. GM49 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas; 4884.5957 261868891 mannanase Carbon Cycling Carbon degradation Hemicellulose Flammeovirga yaeyamensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Flammeovirgaceae;genus:Flammeovirga; 6157.0435 124008343 ppx Phosphorus Polyphosphate degradation NA Microscilla marina ATCC 23134 superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; 5556.8252 157781885 nirk Nitrogen Denitrification NA Azospirillum brasilense superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodospirillales;family:Rhodospirillaceae;genus:Azospirillum; 8627.9947 374561337 amyA Carbon Cycling Carbon degradation Starch Helcococcus kunzii ATCC 51366 superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiales Family XI. Incertae Sedis;genus:Helcococcus;species:Helcococcus kunzii; 6853.0555 257124889 CsoS1_CcmK Carbon Cycling Carbon fixation Bacterial Microcompartments Leptotrichia buccalis C-1013-b superkingdom:Bacteria;phylum:Fusobacteria;class:Fusobacteriia;order:Fusobacteriales;family:Leptotrichiaceae;genus:Leptotrichia;species:Leptotrichia buccalis; 5647.0229 84796642 one_ring_23diox Organic Remediation Aromatics Other aromatics Sphingomonas sp. 1XXyl1b superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Sphingomonadales;family:Sphingomonadaceae;genus:Sphingomonas; 5738.5896 218047572 pmoa Carbon Cycling Methane Methane oxidation uncultured bacterium superkingdom:Bacteria; 153498.0898 395238868 terc Metal Homeostasis Tellurium Detoxification Lactobacillus gigeriorum CRBIP 24.85 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Lactobacillales;family:Lactobacillaceae;genus:Lactobacillus;species:Lactobacillus gigeriorum; 22239.4799 112441874 mcra Carbon Cycling Methane Methanogenesis uncultured methanogenic archaeon superkingdom:Archaea;phylum:Euryarchaeota; 5505.3247 219676579 tfda Organic Remediation Aromatics Chlorinated aromatics gamma proteobacterium NOR5-3 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria; 9502.3294